Psyllid ID: psy14428
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 583 | 2.2.26 [Sep-21-2011] | |||||||
| P05202 | 430 | Aspartate aminotransferas | yes | N/A | 0.596 | 0.809 | 0.466 | 1e-103 | |
| P00507 | 430 | Aspartate aminotransferas | yes | N/A | 0.596 | 0.809 | 0.466 | 1e-103 | |
| Q4R559 | 430 | Aspartate aminotransferas | N/A | N/A | 0.596 | 0.809 | 0.464 | 1e-103 | |
| Q5REB0 | 430 | Aspartate aminotransferas | yes | N/A | 0.596 | 0.809 | 0.464 | 1e-103 | |
| P00505 | 430 | Aspartate aminotransferas | yes | N/A | 0.596 | 0.809 | 0.464 | 1e-102 | |
| Q28F67 | 427 | Aspartate aminotransferas | yes | N/A | 0.596 | 0.814 | 0.464 | 1e-102 | |
| P12344 | 430 | Aspartate aminotransferas | yes | N/A | 0.596 | 0.809 | 0.458 | 1e-101 | |
| P08907 | 401 | Aspartate aminotransferas | yes | N/A | 0.596 | 0.867 | 0.456 | 1e-101 | |
| P00506 | 430 | Aspartate aminotransferas | yes | N/A | 0.596 | 0.809 | 0.448 | 1e-100 | |
| P00508 | 423 | Aspartate aminotransferas | yes | N/A | 0.596 | 0.822 | 0.458 | 3e-98 |
| >sp|P05202|AATM_MOUSE Aspartate aminotransferase, mitochondrial OS=Mus musculus GN=Got2 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 377 bits (968), Expect = e-103, Method: Compositional matrix adjust.
Identities = 182/390 (46%), Positives = 249/390 (63%), Gaps = 42/390 (10%)
Query: 149 PLKQQLKGFNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGD 208
P+ + F +D + KKMNLGVGAYR ++GKPYVLPSV++AE +I KNLD EY IGG
Sbjct: 43 PILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAAKNLDKEYLPIGGL 102
Query: 209 AKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTW 268
A+FCK +A+LA GE+ K R VQ ISG+G+LRVG +FL+RF+ + V+ P P+W
Sbjct: 103 AEFCKASAELALGENNEVLKSGRFVTVQTISGTGALRVGASFLQRFFKFSRDVFLPKPSW 162
Query: 269 NGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLS 328
H D+ + + YRY+D KT G DF+G +EDI +PE+S+L L +HNPTGVD
Sbjct: 163 GNHTPIFRDAGMQLQGYRYYDPKTCGFDFSGALEDISKIPEQSVLLLHACAHNPTGVDPR 222
Query: 329 EDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMG 388
+QW+++A VVK+++L+ FFDMAY G SGD DKDA+++R+F ++ +CL QS++KNMG
Sbjct: 223 PEQWKEIASVVKKKNLFAFFDMAYQGFASGDGDKDAWAVRHFIEQGINVCLCQSYAKNMG 282
Query: 389 LYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDE 448
LYGERVG F+V+ ++E +R+ SQLKILIR YSNPP++GARI IL+ P L
Sbjct: 283 LYGERVGAFTVVCKDAEEAKRVESQLKILIRPLYSNPPLNGARIAATILTSPDL------ 336
Query: 449 TERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKS 508
+ QW +E KGM++RI S+R +L S
Sbjct: 337 ------------------------------------RKQWLQEVKGMADRIISMRTQLVS 360
Query: 509 KILDKGSKKNWDHITNQKGMFCYTGLSASQ 538
+ +GS NW HIT+Q GMFC+TGL Q
Sbjct: 361 NLKKEGSSHNWQHITDQIGMFCFTGLKPEQ 390
|
Plays a key role in amino acid metabolism. Important for metabolite exchange between mitochondria and cytosol. Facilitates cellular uptake of long-chain free fatty acids. Mus musculus (taxid: 10090) EC: 2EC: .EC: 6EC: .EC: 1EC: .EC: 1 |
| >sp|P00507|AATM_RAT Aspartate aminotransferase, mitochondrial OS=Rattus norvegicus GN=Got2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 376 bits (966), Expect = e-103, Method: Compositional matrix adjust.
Identities = 182/390 (46%), Positives = 248/390 (63%), Gaps = 42/390 (10%)
Query: 149 PLKQQLKGFNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGD 208
P+ + F +D + KKMNLGVGAYR ++GKPYVLPSV++AE +I KNLD EY IGG
Sbjct: 43 PILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAGKNLDKEYLPIGGL 102
Query: 209 AKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTW 268
A FCK +A+LA GE+ K R VQ ISG+G+LRVG +FL+RF+ + V+ P P+W
Sbjct: 103 ADFCKASAELALGENSEVLKSGRFVTVQTISGTGALRVGASFLQRFFKFSRDVFLPKPSW 162
Query: 269 NGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLS 328
H D+ + + YRY+D KT G DF+G +EDI +PE+S+L L +HNPTGVD
Sbjct: 163 GNHTPIFRDAGMQLQGYRYYDPKTCGFDFSGALEDISKIPEQSVLLLHACAHNPTGVDPR 222
Query: 329 EDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMG 388
+QW+++A VVK+++L+ FFDMAY G SGD DKDA+++R+F ++ +CL QS++KNMG
Sbjct: 223 PEQWKEMAAVVKKKNLFAFFDMAYQGFASGDGDKDAWAVRHFIEQGINVCLCQSYAKNMG 282
Query: 389 LYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDE 448
LYGERVG F+V+ ++E +R+ SQLKILIR YSNPP++GARI IL+ P L
Sbjct: 283 LYGERVGAFTVVCKDAEEAKRVESQLKILIRPLYSNPPLNGARIAATILTSPDL------ 336
Query: 449 TERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKS 508
+ QW +E KGM++RI S+R +L S
Sbjct: 337 ------------------------------------RKQWLQEVKGMADRIISMRTQLVS 360
Query: 509 KILDKGSKKNWDHITNQKGMFCYTGLSASQ 538
+ +GS NW HIT+Q GMFC+TGL Q
Sbjct: 361 NLKKEGSSHNWQHITDQIGMFCFTGLKPEQ 390
|
Plays a key role in amino acid metabolism. Important for metabolite exchange between mitochondria and cytosol. Facilitates cellular uptake of long-chain free fatty acids. Rattus norvegicus (taxid: 10116) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q4R559|AATM_MACFA Aspartate aminotransferase, mitochondrial OS=Macaca fascicularis GN=GOT2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 375 bits (963), Expect = e-103, Method: Compositional matrix adjust.
Identities = 181/390 (46%), Positives = 247/390 (63%), Gaps = 42/390 (10%)
Query: 149 PLKQQLKGFNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGD 208
P+ + F +D + KKMNLGVGAYR ++GKPYVLPSV++AE +I KNLD EY IGG
Sbjct: 43 PILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAAKNLDKEYLPIGGL 102
Query: 209 AKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTW 268
A+FCK +A+LA GE+ K R VQ ISG+G+LR+G +FL+RF+ + V+ P P+W
Sbjct: 103 AEFCKASAELALGENSEVLKSGRFVTVQTISGTGALRIGASFLQRFFKFSRDVFLPKPSW 162
Query: 269 NGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLS 328
H D+ + + YRY+D KT G DF G +EDI +PE+S+L L +HNPTGVD
Sbjct: 163 GNHTPIFRDAGMQLQGYRYYDPKTCGFDFTGAVEDISKIPEQSVLLLHACAHNPTGVDPR 222
Query: 329 EDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMG 388
+QW+++A VVK+R+L+ FFDMAY G SGD DKDA+++R+F ++ +CL QS++KNMG
Sbjct: 223 PEQWKEIATVVKKRNLFAFFDMAYQGFASGDGDKDAWAVRHFIEQGINVCLCQSYAKNMG 282
Query: 389 LYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDE 448
LYGERVG F+++ +DE +R+ SQLKILIR YSNPP++GARI IL+ P L
Sbjct: 283 LYGERVGAFTMVCKDADEAKRVESQLKILIRPMYSNPPLNGARIAAAILNTPDL------ 336
Query: 449 TERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKS 508
+ QW +E KGM++RI +R +L S
Sbjct: 337 ------------------------------------RKQWLQEVKGMADRIIGMRTQLVS 360
Query: 509 KILDKGSKKNWDHITNQKGMFCYTGLSASQ 538
+ +GS NW HIT+Q GMFC+TGL Q
Sbjct: 361 NLKKEGSTHNWQHITDQIGMFCFTGLKPEQ 390
|
Plays a key role in amino acid metabolism. Important for metabolite exchange between mitochondria and cytosol. Facilitates cellular uptake of long-chain free fatty acids. Macaca fascicularis (taxid: 9541) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q5REB0|AATM_PONAB Aspartate aminotransferase, mitochondrial OS=Pongo abelii GN=GOT2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 375 bits (963), Expect = e-103, Method: Compositional matrix adjust.
Identities = 181/390 (46%), Positives = 247/390 (63%), Gaps = 42/390 (10%)
Query: 149 PLKQQLKGFNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGD 208
P+ + F +D + KKMNLGVGAYR ++GKPYVLPSV++AE +I KNLD EY IGG
Sbjct: 43 PILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAAKNLDKEYLPIGGL 102
Query: 209 AKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTW 268
A+FCK +A+LA GE+ K R VQ ISG+G+LR+G +FL+RF+ + V+ P P+W
Sbjct: 103 AEFCKASAELALGENSEVLKSGRFVTVQTISGTGALRIGASFLQRFFKFSRDVFLPKPSW 162
Query: 269 NGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLS 328
H D+ + + YRY+D KT G DF G +EDI +PE+S+L L +HNPTGVD
Sbjct: 163 GNHTPIFRDAGMQLQGYRYYDPKTCGFDFTGAVEDISKIPEQSVLLLHACAHNPTGVDPR 222
Query: 329 EDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMG 388
+QW+++A VVK+R+L+ FFDMAY G SGD DKDA+++R+F ++ +CL QS++KNMG
Sbjct: 223 PEQWKEIATVVKKRNLFAFFDMAYQGFASGDGDKDAWAVRHFIEQGINVCLCQSYAKNMG 282
Query: 389 LYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDE 448
LYGERVG F+++ +DE +R+ SQLKILIR YSNPP++GARI IL+ P L
Sbjct: 283 LYGERVGAFTMVCKDADEAKRVESQLKILIRPMYSNPPLNGARIAAAILNTPDL------ 336
Query: 449 TERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKS 508
+ QW +E KGM++RI +R +L S
Sbjct: 337 ------------------------------------RKQWLQEVKGMADRIIGMRTQLVS 360
Query: 509 KILDKGSKKNWDHITNQKGMFCYTGLSASQ 538
+ +GS NW HIT+Q GMFC+TGL Q
Sbjct: 361 NLKKEGSTHNWQHITDQIGMFCFTGLKPEQ 390
|
Plays a key role in amino acid metabolism. Important for metabolite exchange between mitochondria and cytosol. Facilitates cellular uptake of long-chain free fatty acids. Pongo abelii (taxid: 9601) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 |
| >sp|P00505|AATM_HUMAN Aspartate aminotransferase, mitochondrial OS=Homo sapiens GN=GOT2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 373 bits (958), Expect = e-102, Method: Compositional matrix adjust.
Identities = 181/390 (46%), Positives = 246/390 (63%), Gaps = 42/390 (10%)
Query: 149 PLKQQLKGFNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGD 208
P+ + F +D + KKMNLGVGAYR ++GKPYVLPSV++AE +I KNLD EY IGG
Sbjct: 43 PILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAAKNLDKEYLPIGGL 102
Query: 209 AKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTW 268
A+FCK +A+LA GE+ K R VQ ISG+G+LR+G +FL+RF+ + V+ P PTW
Sbjct: 103 AEFCKASAELALGENSEVLKSGRFVTVQTISGTGALRIGASFLQRFFKFSRDVFLPKPTW 162
Query: 269 NGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLS 328
H D+ + + YRY+D KT G DF G +EDI +PE+S+L L +HNPTGVD
Sbjct: 163 GNHTPIFRDAGMQLQGYRYYDPKTCGFDFTGAVEDISKIPEQSVLLLHACAHNPTGVDPR 222
Query: 329 EDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMG 388
+QW+++A VVK+R+L+ FFDMAY G SGD DKDA+++R+F ++ +CL QS++KNMG
Sbjct: 223 PEQWKEIATVVKKRNLFAFFDMAYQGFASGDGDKDAWAVRHFIEQGINVCLCQSYAKNMG 282
Query: 389 LYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDE 448
LYGERVG F+++ +DE +R+ SQLKILIR YSNPP++GARI IL+ P L+ Q
Sbjct: 283 LYGERVGAFTMVCKDADEAKRVESQLKILIRPMYSNPPLNGARIAAAILNTPDLRKQ--- 339
Query: 449 TERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKS 508
W +E K M++RI +R +L S
Sbjct: 340 ---------------------------------------WLQEVKVMADRIIGMRTQLVS 360
Query: 509 KILDKGSKKNWDHITNQKGMFCYTGLSASQ 538
+ +GS NW HIT+Q GMFC+TGL Q
Sbjct: 361 NLKKEGSTHNWQHITDQIGMFCFTGLKPEQ 390
|
Plays a key role in amino acid metabolism. Important for metabolite exchange between mitochondria and cytosol. Facilitates cellular uptake of long-chain free fatty acids. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q28F67|AATM_XENTR Aspartate aminotransferase, mitochondrial OS=Xenopus tropicalis GN=got2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 372 bits (955), Expect = e-102, Method: Compositional matrix adjust.
Identities = 181/390 (46%), Positives = 246/390 (63%), Gaps = 42/390 (10%)
Query: 149 PLKQQLKGFNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGD 208
P+ + F +D + KKMNLGVGAYR ++GKPYVL SV++AE ++ KNLD EY IGG
Sbjct: 40 PILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLSSVRKAEAQLASKNLDKEYLPIGGL 99
Query: 209 AKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTW 268
A+F + +AQLA GE+ A + R VQ ISG+GSLRVG FL+RFY + VY P P+W
Sbjct: 100 AEFARASAQLALGENCDAIQSGRFITVQTISGTGSLRVGANFLQRFYKYSRDVYLPKPSW 159
Query: 269 NGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLS 328
H D+ L V YRY+D KT G DF G ++DI +PE+SI+ +HNPTGVD
Sbjct: 160 GNHTPIFRDAGLEVKGYRYYDPKTCGFDFTGALDDISKIPEQSIILFHACAHNPTGVDPK 219
Query: 329 EDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMG 388
++QW++LA ++K R L+PFFDMAY G SGD ++DA+++R+F +E + L+QS++KNMG
Sbjct: 220 QEQWKELAALIKSRRLFPFFDMAYQGFASGDTNRDAWAVRHFIQEGINVVLSQSYAKNMG 279
Query: 389 LYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDE 448
LYGERVG F+V+ ++E +R+ SQLKILIR YSNPP++GARI IL+ P L
Sbjct: 280 LYGERVGAFTVVCSDAEEAKRVESQLKILIRPMYSNPPLNGARIAAAILTQPDL------ 333
Query: 449 TERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKS 508
+ +W +E KGM+NRI S+RE+L S
Sbjct: 334 ------------------------------------RKEWLQEVKGMANRIISMREQLVS 357
Query: 509 KILDKGSKKNWDHITNQKGMFCYTGLSASQ 538
+ +GS NW HI++Q GMFC+TGL Q
Sbjct: 358 NLKKEGSIHNWQHISDQIGMFCFTGLRPEQ 387
|
Plays a key role in amino acid metabolism. Important for metabolite exchange between mitochondria and cytosol. May facilitate cellular uptake of long-chain free fatty acids. Xenopus tropicalis (taxid: 8364) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 |
| >sp|P12344|AATM_BOVIN Aspartate aminotransferase, mitochondrial OS=Bos taurus GN=GOT2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 370 bits (950), Expect = e-101, Method: Compositional matrix adjust.
Identities = 179/390 (45%), Positives = 245/390 (62%), Gaps = 42/390 (10%)
Query: 149 PLKQQLKGFNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGD 208
P+ + F +D + KKMNLGVGAYR ++GKPYVLPSV++AE +I KNLD EY I G
Sbjct: 43 PILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAAKNLDKEYLPIAGL 102
Query: 209 AKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTW 268
A+FCK +A+LA GE+ K R VQ ISG+G+LR+G +FL+RF+ + V+ P PTW
Sbjct: 103 AEFCKASAELALGENNEVLKSGRYVTVQTISGTGALRIGASFLQRFFKFSRDVFLPKPTW 162
Query: 269 NGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLS 328
H D+ + + +YRY+D KT G DF G +EDI +P +S++ L +HNPTGVD
Sbjct: 163 GNHTPIFRDAGMQLQSYRYYDPKTCGFDFTGAIEDISKIPAQSVILLHACAHNPTGVDPR 222
Query: 329 EDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMG 388
+QW+++A VVK+ +L+ FFDMAY G SGD +KDA+++R+F ++ +CL QS++KNMG
Sbjct: 223 PEQWKEMATVVKKNNLFAFFDMAYQGFASGDGNKDAWAVRHFIEQGINVCLCQSYAKNMG 282
Query: 389 LYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDE 448
LYGERVG F+V+ ++E +R+ SQLKILIR YSNPPI+GARI + IL+ P
Sbjct: 283 LYGERVGAFTVVCKDAEEAKRVESQLKILIRPMYSNPPINGARIASTILTSP-------- 334
Query: 449 TERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKS 508
L+ QW E KGM++RI S+R +L S
Sbjct: 335 ----------------------------------DLRKQWLHEVKGMADRIISMRTQLVS 360
Query: 509 KILDKGSKKNWDHITNQKGMFCYTGLSASQ 538
+ +GS NW HI +Q GMFCYTGL Q
Sbjct: 361 NLKKEGSSHNWQHIIDQIGMFCYTGLKPEQ 390
|
Plays a key role in amino acid metabolism. Important for metabolite exchange between mitochondria and cytosol. Facilitates cellular uptake of long-chain free fatty acids. Bos taurus (taxid: 9913) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 |
| >sp|P08907|AATM_HORSE Aspartate aminotransferase, mitochondrial OS=Equus caballus GN=GOT2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 369 bits (948), Expect = e-101, Method: Compositional matrix adjust.
Identities = 178/390 (45%), Positives = 247/390 (63%), Gaps = 42/390 (10%)
Query: 149 PLKQQLKGFNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGD 208
P+ + + +D + KKMNLGVGAYR ++GKPYVLPSV++AE +I KNLD EY IGG
Sbjct: 14 PILGVTEAYKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAAKNLDKEYLPIGGL 73
Query: 209 AKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTW 268
A+FCK +A+LA GE+ A K R VQ ISG+G+LR+G FL+RF+ + V+ P P+W
Sbjct: 74 AEFCKASAELALGENSEALKSGRYVTVQSISGTGALRIGANFLQRFFKFSRDVFLPKPSW 133
Query: 269 NGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLS 328
H D+ L + AYRY+D KT G D G +EDI +P++SI+ L +HNPTGVD
Sbjct: 134 GNHTPIFRDAGLQLHAYRYYDPKTCGFDVTGALEDISKIPQQSIILLHACAHNPTGVDPR 193
Query: 329 EDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMG 388
+QW+++A +VK+ +L+ FFDMAY G SGD +KDA+++RYF ++ +CL QS++KNMG
Sbjct: 194 PEQWKEIATLVKKNNLFAFFDMAYQGFASGDGNKDAWAVRYFIEQGINVCLCQSYAKNMG 253
Query: 389 LYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDE 448
LYGERVG F+++ +DE +R+ SQLKILIR YSNPP++GARI + IL+ P L
Sbjct: 254 LYGERVGAFTMVCKDADEAKRVESQLKILIRPLYSNPPLNGARIASTILTSPDL------ 307
Query: 449 TERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKS 508
+ QW +E KGM++RI S+R +L S
Sbjct: 308 ------------------------------------RKQWLQEVKGMADRIISMRTQLVS 331
Query: 509 KILDKGSKKNWDHITNQKGMFCYTGLSASQ 538
+ +GS +W HI +Q GMFC+TGL Q
Sbjct: 332 NLKKEGSSHSWQHIADQIGMFCFTGLKPEQ 361
|
Plays a key role in amino acid metabolism. Important for metabolite exchange between mitochondria and cytosol. Facilitates cellular uptake of long-chain free fatty acids. Equus caballus (taxid: 9796) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 |
| >sp|P00506|AATM_PIG Aspartate aminotransferase, mitochondrial OS=Sus scrofa GN=GOT2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 367 bits (941), Expect = e-100, Method: Compositional matrix adjust.
Identities = 175/390 (44%), Positives = 246/390 (63%), Gaps = 42/390 (10%)
Query: 149 PLKQQLKGFNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGD 208
P+ + F +D + KKMNLGVGAYR ++GKPYVLPSV++AE +I KNLD EY IGG
Sbjct: 43 PILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAAKNLDKEYLPIGGL 102
Query: 209 AKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTW 268
A+FCK +A+LA GE+ K R VQ ISG+G+LR+G FL+RF+ + V+ P P+W
Sbjct: 103 AEFCKASAELALGENNEVLKSGRYVTVQTISGTGALRIGANFLQRFFKFSRDVFLPKPSW 162
Query: 269 NGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLS 328
H D+ + + +YRY+D KT G DF G +EDI +P +S++ L +HNPTGVD
Sbjct: 163 GNHTPIFRDAGMQLHSYRYYDPKTCGFDFTGALEDISKIPAQSVILLHACAHNPTGVDPR 222
Query: 329 EDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMG 388
+QW+++A +VK+ +L+ FFDMAY G SGD +KDA+++R+F ++ +CL QS++KNMG
Sbjct: 223 PEQWKEMATLVKKNNLFAFFDMAYQGFASGDGNKDAWAVRHFIEQGINVCLCQSYAKNMG 282
Query: 389 LYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDE 448
LYGERVG F+V+ ++E +R+ SQLKILIR YSNPP++GARI + IL+ P L
Sbjct: 283 LYGERVGAFTVVCKDAEEAKRVESQLKILIRPMYSNPPVNGARIASTILTSPDL------ 336
Query: 449 TERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKS 508
+ QW +E KGM++RI S+R +L S
Sbjct: 337 ------------------------------------RQQWLQEVKGMADRIISMRTQLVS 360
Query: 509 KILDKGSKKNWDHITNQKGMFCYTGLSASQ 538
+ +GS NW HI +Q GMFC+TG+ Q
Sbjct: 361 NLKKEGSSHNWQHIVDQIGMFCFTGIKPEQ 390
|
Plays a key role in amino acid metabolism. Important for metabolite exchange between mitochondria and cytosol. Facilitates cellular uptake of long-chain free fatty acids. Sus scrofa (taxid: 9823) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 |
| >sp|P00508|AATM_CHICK Aspartate aminotransferase, mitochondrial OS=Gallus gallus GN=GOT2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 359 bits (922), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 179/390 (45%), Positives = 243/390 (62%), Gaps = 42/390 (10%)
Query: 149 PLKQQLKGFNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGD 208
P+ + F +D + KKMNLGVGAYR ++GK YVL V++AE I K +D EY I G
Sbjct: 36 PILGVTEAFKRDTNSKKMNLGVGAYRDDNGKSYVLNCVRKAEAMIAAKKMDKEYLPIAGL 95
Query: 209 AKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTW 268
A F + +A+LA GE+ AFK R VQGISG+GSLRVG FL+RF+ + VY P P+W
Sbjct: 96 ADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSW 155
Query: 269 NGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLS 328
H D+ L + AYRY+D KT LDF G MEDI +PE+SI+ L +HNPTGVD
Sbjct: 156 GNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPR 215
Query: 329 EDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMG 388
++QW++LA VVK+R+L +FDMAY G SGD ++DA++LR+F ++ + L+QS++KNMG
Sbjct: 216 QEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMG 275
Query: 389 LYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDE 448
LYGER G F+V+ ++E +R+ SQLKILIR YSNPP++GARI + IL+ P
Sbjct: 276 LYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTP-------- 327
Query: 449 TERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKS 508
+L+ +W E KGM++RI S+R +L S
Sbjct: 328 ----------------------------------ELRKEWLVEVKGMADRIISMRTQLVS 353
Query: 509 KILDKGSKKNWDHITNQKGMFCYTGLSASQ 538
+ +GS NW HIT+Q GMFC+TGL Q
Sbjct: 354 NLKKEGSSHNWQHITDQIGMFCFTGLKPEQ 383
|
Plays a key role in amino acid metabolism. Important for metabolite exchange between mitochondria and cytosol. May facilitate cellular uptake of long-chain free fatty acids. Gallus gallus (taxid: 9031) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 583 | ||||||
| 91084123 | 423 | PREDICTED: similar to aspartate aminotra | 0.586 | 0.808 | 0.505 | 1e-110 | |
| 452988474 | 423 | hypothetical protein MYCFIDRAFT_209746 [ | 0.586 | 0.808 | 0.513 | 1e-109 | |
| 332372484 | 424 | unknown [Dendroctonus ponderosae] | 0.586 | 0.806 | 0.486 | 1e-108 | |
| 378733812 | 428 | aspartate aminotransferase [Exophiala de | 0.586 | 0.799 | 0.502 | 1e-108 | |
| 452846713 | 427 | hypothetical protein DOTSEDRAFT_67626 [D | 0.586 | 0.800 | 0.507 | 1e-107 | |
| 170040614 | 429 | aspartate aminotransferase [Culex quinqu | 0.586 | 0.797 | 0.494 | 1e-107 | |
| 453089098 | 429 | aspartate aminotransferase [Mycosphaerel | 0.586 | 0.797 | 0.510 | 1e-107 | |
| 330931763 | 425 | hypothetical protein PTT_15769 [Pyrenoph | 0.586 | 0.804 | 0.5 | 1e-105 | |
| 396464635 | 426 | similar to mitochondrial aspartate amino | 0.586 | 0.802 | 0.497 | 1e-105 | |
| 449300498 | 427 | hypothetical protein BAUCODRAFT_33868 [B | 0.598 | 0.817 | 0.489 | 1e-105 |
| >gi|91084123|ref|XP_967224.1| PREDICTED: similar to aspartate aminotransferase [Tribolium castaneum] gi|270006661|gb|EFA03109.1| hypothetical protein TcasGA2_TC013019 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 194/384 (50%), Positives = 252/384 (65%), Gaps = 42/384 (10%)
Query: 155 KGFNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKL 214
+ F +D +P K+NLGVGAYR ++GKPYVLPSV++AE ++ KNLD EYA I G A+FCK
Sbjct: 42 EAFKRDTNPNKINLGVGAYRDDNGKPYVLPSVRKAEEKLRAKNLDKEYAPISGIAEFCKA 101
Query: 215 AAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRF 274
A +LA G + + A VQGISG+GSLRVG AF FYPG+KTVY P PTW H
Sbjct: 102 AIELALGANSEIVSNGLNATVQGISGTGSLRVGAAFFSNFYPGIKTVYLPKPTWGNHTPI 161
Query: 275 CTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQ 334
+ ++V +Y ++D KT GLDF G ++DI +PERSI+ L +HNPTGVD + DQW +
Sbjct: 162 FKHAGMDVQSYTFYDPKTCGLDFKGALDDINKIPERSIILLHACAHNPTGVDPNLDQWAE 221
Query: 335 LAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERV 394
L+ ++KQR+L+PFFDMAY G SGD D+DA ++R F KE ++ LAQSF+KNMGLYGER
Sbjct: 222 LSSLIKQRNLFPFFDMAYQGFASGDIDRDAQAVRLFIKEGHKIVLAQSFAKNMGLYGERA 281
Query: 395 GTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMS 454
G F+V T + +ET R+MSQLKILIR YSNPPI+GARIV EIL+DP L
Sbjct: 282 GAFTVTTESQEETARVMSQLKILIRALYSNPPINGARIVAEILTDPAL------------ 329
Query: 455 QLKILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKG 514
+A W +E KGM++RI S+R +L+ + +G
Sbjct: 330 ------------------------------RADWLKEVKGMADRIISVRTKLRDNLKKEG 359
Query: 515 SKKNWDHITNQKGMFCYTGLSASQ 538
S KNW HIT+Q GMFCYTG++ Q
Sbjct: 360 STKNWQHITDQIGMFCYTGMTPDQ 383
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|452988474|gb|EME88229.1| hypothetical protein MYCFIDRAFT_209746 [Pseudocercospora fijiensis CIRAD86] | Back alignment and taxonomy information |
|---|
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 197/384 (51%), Positives = 249/384 (64%), Gaps = 42/384 (10%)
Query: 155 KGFNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKL 214
+ F KD + KK+NLGVGAYR + GKPYVLPSVKEAE+++ ++NLD EYA I G F K
Sbjct: 42 EAFKKDSNTKKINLGVGAYRDDKGKPYVLPSVKEAEQKVVQQNLDKEYAGITGVPDFTKA 101
Query: 215 AAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRF 274
AA LAYG D A KD R+AI Q ISG+G+LR+G FL R YPG KT+Y PTP+W H
Sbjct: 102 AALLAYGPDSTAIKDGRVAITQSISGTGALRIGGEFLARHYPGAKTIYIPTPSWANHKAV 161
Query: 275 CTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQ 334
+DS L V +Y+Y++ T GLDF GM+ DIKAMP+ SI+ L +HNPTGVD +E+QWR
Sbjct: 162 FSDSGLEVKSYKYYNKDTIGLDFDGMIADIKAMPKGSIVLLHACAHNPTGVDPTEEQWRA 221
Query: 335 LAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERV 394
++ VK +PFFDMAY G SGD +KDA++LRYF ++ Q CLAQSF+KNMGLYGERV
Sbjct: 222 ISDAVKAGEHFPFFDMAYQGFASGDTNKDAYALRYFIEQGHQPCLAQSFAKNMGLYGERV 281
Query: 395 GTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMS 454
G FS++T +++E R+ SQ+KIL+R YSNPP+HGARI + IL+DP
Sbjct: 282 GAFSIVTASAEEKTRVDSQVKILVRPLYSNPPVHGARIASTILNDP-------------- 327
Query: 455 QLKILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKG 514
L QW E KGM++RI +R LK + G
Sbjct: 328 ----------------------------ALNKQWLGEVKGMADRIIKMRTLLKQNLEKLG 359
Query: 515 SKKNWDHITNQKGMFCYTGLSASQ 538
SK NWDHIT+Q GMF YTGL+ Q
Sbjct: 360 SKHNWDHITSQIGMFAYTGLTPEQ 383
|
Source: Pseudocercospora fijiensis CIRAD86 Species: Pseudocercospora fijiensis Genus: Pseudocercospora Family: Mycosphaerellaceae Order: Capnodiales Class: Dothideomycetes Phylum: Ascomycota Superkingdom: Eukaryota |
| >gi|332372484|gb|AEE61384.1| unknown [Dendroctonus ponderosae] | Back alignment and taxonomy information |
|---|
Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust.
Identities = 187/384 (48%), Positives = 255/384 (66%), Gaps = 42/384 (10%)
Query: 155 KGFNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKL 214
+ F +D +PKK+NLGVGAYR +DGKPYVLP V++AE ++ KNLD EYA IGG A+FCK
Sbjct: 43 EAFRRDTNPKKINLGVGAYRDDDGKPYVLPCVRKAEEKLRAKNLDKEYAPIGGTAEFCKR 102
Query: 215 AAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRF 274
+ +LA GE ++ A +QGISG+GSLRVG A L F+P K VY P+P+W H
Sbjct: 103 SIELALGEGSEVVQNGLNATIQGISGTGSLRVGAALLSNFFPANKVVYLPSPSWGNHTPI 162
Query: 275 CTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQ 334
+ L+V +YRY+D KT GLDFAG +EDI +PE+SI+ L +HNPTGVD S++QW +
Sbjct: 163 FKHAGLDVKSYRYYDPKTCGLDFAGALEDISKIPEKSIILLHACAHNPTGVDPSKEQWAE 222
Query: 335 LAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERV 394
L+ ++K+++L+PFFDMAY G +G D DA+++R F KE + L QS++KNMGLYGER
Sbjct: 223 LSNLIKKKNLFPFFDMAYQGFATGSVDNDAYAVRLFVKEGHLISLCQSYAKNMGLYGERA 282
Query: 395 GTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMS 454
G FS+++ + DE +R+MSQ+KILIR YSNPPI+GARIVTEILSDP
Sbjct: 283 GAFSIISDSKDEADRVMSQIKILIRALYSNPPINGARIVTEILSDP-------------- 328
Query: 455 QLKILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKG 514
+L++ W +E KGM++RI S+R L+ + +G
Sbjct: 329 ----------------------------QLRSDWLKEVKGMADRIISVRTTLRDNLKKEG 360
Query: 515 SKKNWDHITNQKGMFCYTGLSASQ 538
S +NW+HITNQ GMFC+TG++ Q
Sbjct: 361 STRNWEHITNQIGMFCFTGMNPQQ 384
|
Source: Dendroctonus ponderosae Species: Dendroctonus ponderosae Genus: Dendroctonus Family: Curculionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|378733812|gb|EHY60271.1| aspartate aminotransferase [Exophiala dermatitidis NIH/UT8656] | Back alignment and taxonomy information |
|---|
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 193/384 (50%), Positives = 246/384 (64%), Gaps = 42/384 (10%)
Query: 155 KGFNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKL 214
+ + KDP P+K+NLGVGAYR ++GKPYVLPSVK E ++ D EYA I G F K
Sbjct: 47 EAYKKDPFPEKINLGVGAYRDDNGKPYVLPSVKAGEEKVVSSGHDKEYAGITGVPAFIKA 106
Query: 215 AAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRF 274
AA LAYG D K++R+AI Q ISG+G+LR+G AFL+R YPG K +Y PTP+W H
Sbjct: 107 AAVLAYGPDSKPIKEDRIAITQSISGTGALRIGGAFLQRHYPGAKAIYIPTPSWANHKAV 166
Query: 275 CTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQ 334
+DS L V Y+Y++ T GLDF GM+ D+KA PE SI+ L +HNPTG+D + +QWRQ
Sbjct: 167 FSDSGLEVKQYKYYNKNTIGLDFEGMVSDLKAAPEGSIVLLHACAHNPTGIDPTPEQWRQ 226
Query: 335 LAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERV 394
++ VVK++ YPFFDMAY G SGD DKDA+ +R F ++ L LAQSF+KNMGLYGERV
Sbjct: 227 ISDVVKEKGHYPFFDMAYQGFASGDTDKDAYPVRLFVEQGHGLALAQSFAKNMGLYGERV 286
Query: 395 GTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMS 454
G FS++ +++E +R+ SQ+KI++R YSNPPIHGARI TEILSDPK
Sbjct: 287 GAFSIVCESAEEKKRVESQIKIIVRPLYSNPPIHGARIATEILSDPK------------- 333
Query: 455 QLKILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKG 514
L QW E KGM++RI +R LK + + G
Sbjct: 334 -----------------------------LNKQWLGEVKGMADRIIKMRALLKKNLQELG 364
Query: 515 SKKNWDHITNQKGMFCYTGLSASQ 538
SK NWDHITNQ GMF YTGL+ Q
Sbjct: 365 SKHNWDHITNQIGMFAYTGLTPEQ 388
|
Source: Exophiala dermatitidis NIH/UT8656 Species: Exophiala dermatitidis Genus: Exophiala Family: Herpotrichiellaceae Order: Chaetothyriales Class: Eurotiomycetes Phylum: Ascomycota Superkingdom: Eukaryota |
| >gi|452846713|gb|EME48645.1| hypothetical protein DOTSEDRAFT_67626 [Dothistroma septosporum NZE10] | Back alignment and taxonomy information |
|---|
Score = 397 bits (1019), Expect = e-107, Method: Compositional matrix adjust.
Identities = 195/384 (50%), Positives = 245/384 (63%), Gaps = 42/384 (10%)
Query: 155 KGFNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKL 214
+ F KD + KK+NLGVGAYR + GKPYVLPSVK+AE+++ + NLD EYA I G F K
Sbjct: 46 EAFKKDSNSKKINLGVGAYRDDKGKPYVLPSVKQAEQKVVQANLDKEYAGITGVPDFTKA 105
Query: 215 AAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRF 274
AA LAYG D K+ R+ I Q ISG+G+LR+G FL R YP KT+Y PTP+W H
Sbjct: 106 AALLAYGPDSAPLKEGRIVITQSISGTGALRIGGEFLARHYPHAKTIYIPTPSWANHKAV 165
Query: 275 CTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQ 334
DS L V YRY++ T GLDF GM+ DIK+MP+ SI+ L +HNPTGVD +E+QW+
Sbjct: 166 FLDSGLEVKQYRYYNKDTIGLDFDGMVADIKSMPKNSIVLLHACAHNPTGVDPTEEQWKG 225
Query: 335 LAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERV 394
++ VK+ YPFFDMAY G SGD DKDAF+LRYF KE Q CLAQSF+KNMGLYGERV
Sbjct: 226 ISDAVKEGEHYPFFDMAYQGFASGDTDKDAFALRYFLKEGHQPCLAQSFAKNMGLYGERV 285
Query: 395 GTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMS 454
G FS++T +++E R+ SQ+KIL+R YSNPP+HGAR+ + IL+DP
Sbjct: 286 GAFSIVTASTEEKARVDSQVKILVRPLYSNPPVHGARVASTILNDP-------------- 331
Query: 455 QLKILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKG 514
+L QW E KGM++RI +R LK + G
Sbjct: 332 ----------------------------ELNKQWLGEVKGMADRIIKMRALLKDNLSTLG 363
Query: 515 SKKNWDHITNQKGMFCYTGLSASQ 538
SK NWDHIT+Q GMF YTGL+ Q
Sbjct: 364 SKHNWDHITSQIGMFAYTGLTPEQ 387
|
Source: Dothistroma septosporum NZE10 Species: Mycosphaerella pini Genus: Mycosphaerella Family: Mycosphaerellaceae Order: Capnodiales Class: Dothideomycetes Phylum: Ascomycota Superkingdom: Eukaryota |
| >gi|170040614|ref|XP_001848088.1| aspartate aminotransferase [Culex quinquefasciatus] gi|167864227|gb|EDS27610.1| aspartate aminotransferase [Culex quinquefasciatus] | Back alignment and taxonomy information |
|---|
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 190/384 (49%), Positives = 248/384 (64%), Gaps = 42/384 (10%)
Query: 155 KGFNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKL 214
+ + KD +PKK+NLGVGAYR ++GKP+VLPSVK+A +R+ EKNLDHEY+ IGG A+FCK
Sbjct: 48 EAYKKDSNPKKINLGVGAYRDDNGKPFVLPSVKKASQRLVEKNLDHEYSPIGGTAEFCKN 107
Query: 215 AAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRF 274
+ +LA GED A VQ ISG+G+LR+G AFL F+PGVK +Y PTP+W H
Sbjct: 108 SIKLALGEDSQHVAGGANATVQAISGTGALRIGGAFLASFFPGVKDIYLPTPSWGNHGPI 167
Query: 275 CTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQ 334
S LNV AYRY++ T G DF G +ED+ +PERSI+ L +HNPTGVD +QW +
Sbjct: 168 FRHSGLNVKAYRYYEPSTCGFDFKGALEDLSKIPERSIVLLHACAHNPTGVDPKPEQWAE 227
Query: 335 LAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERV 394
++ V+KQR+LYPFFDMAY G SGD +KDA ++R F K+ Q+ LAQSF+KNMGLYGER
Sbjct: 228 MSAVIKQRNLYPFFDMAYQGFASGDVNKDALAVRSFLKDGHQIALAQSFAKNMGLYGERA 287
Query: 395 GTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMS 454
G FS++ DE +R MSQ+KILIR YSNPPIHGAR+V EILSD L+
Sbjct: 288 GAFSLICADKDEADRTMSQIKILIRPMYSNPPIHGARLVAEILSDASLR----------- 336
Query: 455 QLKILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKG 514
+W + K M++RI S+R L++ + G
Sbjct: 337 -------------------------------KEWLADVKLMADRIISVRSTLQNNLKKLG 365
Query: 515 SKKNWDHITNQKGMFCYTGLSASQ 538
S +NW HIT+Q GMFC+TG++ Q
Sbjct: 366 SARNWSHITDQIGMFCFTGMNQQQ 389
|
Source: Culex quinquefasciatus Species: Culex quinquefasciatus Genus: Culex Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|453089098|gb|EMF17138.1| aspartate aminotransferase [Mycosphaerella populorum SO2202] | Back alignment and taxonomy information |
|---|
Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust.
Identities = 196/384 (51%), Positives = 244/384 (63%), Gaps = 42/384 (10%)
Query: 155 KGFNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKL 214
+ F KD + KK+NLGVGAYR + GKPYVLPSVK AE+++ ++NLD EYA I G F K
Sbjct: 48 EAFKKDANTKKINLGVGAYRDDQGKPYVLPSVKTAEQKVIQQNLDKEYAGITGVPDFTKA 107
Query: 215 AAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRF 274
AA LAYG D A K+ R+AI Q ISG+G+LR+G FL R YPG KT+Y PTP+W H
Sbjct: 108 AALLAYGPDSSAIKEGRIAITQSISGTGALRIGGDFLHRHYPGAKTIYIPTPSWANHKAV 167
Query: 275 CTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQ 334
TDS L V YRY++ T GLDF GM+ DIKAMP+ SI+ L +HNPTGVD +++QW+
Sbjct: 168 FTDSGLEVKQYRYYNKDTIGLDFEGMVADIKAMPKGSIVLLHACAHNPTGVDPTQEQWKA 227
Query: 335 LAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERV 394
++ VK+ +PFFDMAY G SGD DKDAF+LRYF ++ CLAQSF+KNMGLYGERV
Sbjct: 228 ISDAVKEGDHFPFFDMAYQGFASGDTDKDAFALRYFIQQGHYPCLAQSFAKNMGLYGERV 287
Query: 395 GTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMS 454
G FS++T + +E R+ SQ+KIL+R YSNPP+HGARI + IL+DP L
Sbjct: 288 GAFSIVTSSPEEKVRVDSQVKILVRPLYSNPPVHGARIASAILNDPAL------------ 335
Query: 455 QLKILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKG 514
QW E K M+ RI +R LKS + G
Sbjct: 336 ------------------------------NKQWLGEVKDMAERIIKMRALLKSNLEKLG 365
Query: 515 SKKNWDHITNQKGMFCYTGLSASQ 538
SK NWDHIT+Q GMF YTGL Q
Sbjct: 366 SKHNWDHITSQIGMFAYTGLKPEQ 389
|
Source: Mycosphaerella populorum SO2202 Species: Sphaerulina musiva Genus: Sphaerulina Family: Mycosphaerellaceae Order: Capnodiales Class: Dothideomycetes Phylum: Ascomycota Superkingdom: Eukaryota |
| >gi|330931763|ref|XP_003303527.1| hypothetical protein PTT_15769 [Pyrenophora teres f. teres 0-1] gi|311320420|gb|EFQ88373.1| hypothetical protein PTT_15769 [Pyrenophora teres f. teres 0-1] | Back alignment and taxonomy information |
|---|
Score = 389 bits (1000), Expect = e-105, Method: Compositional matrix adjust.
Identities = 192/384 (50%), Positives = 247/384 (64%), Gaps = 42/384 (10%)
Query: 155 KGFNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKL 214
+ F D +PKK+NLGVGAYR + GKPYVLPSV++AE++I + +LD EYA I G F K
Sbjct: 44 EAFKADSNPKKINLGVGAYRDDKGKPYVLPSVRQAEKKILDSSLDKEYAGITGVPNFTKA 103
Query: 215 AAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRF 274
A +LAYGED K++ +A+ Q ISG+G+LR+G AFLER YPG KT+Y PTP+W H
Sbjct: 104 ALRLAYGEDSTPLKNDCIAVTQSISGTGALRIGGAFLERHYPGAKTIYIPTPSWANHNAV 163
Query: 275 CTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQ 334
DS L V YRY++ T GLDF GM+ DIKAMP+ SI+ L +HNPTGVD +E+QW +
Sbjct: 164 FKDSGLKVEKYRYYNKDTIGLDFEGMVADIKAMPKNSIVLLHACAHNPTGVDPTEEQWVK 223
Query: 335 LAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERV 394
+A VK +PFFDMAY G SGD KDAF+LR+F KE + LAQSF+KNMGLYGERV
Sbjct: 224 IAEAVKAGDHFPFFDMAYQGFASGDTSKDAFALRHFIKEGLRPVLAQSFAKNMGLYGERV 283
Query: 395 GTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMS 454
G FS++ +++E +R+ SQ+KIL+R YSNPP+HGARI +EIL+D
Sbjct: 284 GAFSIVCESAEEKKRVDSQIKILVRPLYSNPPVHGARIASEILND--------------- 328
Query: 455 QLKILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKG 514
L QW E KGM++RI ++R LK + G
Sbjct: 329 ---------------------------SSLNQQWLGEVKGMADRIITMRALLKENLEKLG 361
Query: 515 SKKNWDHITNQKGMFCYTGLSASQ 538
SK +W HIT+Q GMF YTGL+A Q
Sbjct: 362 SKHDWSHITSQIGMFAYTGLTAEQ 385
|
Source: Pyrenophora teres f. teres 0-1 Species: Pyrenophora teres Genus: Pyrenophora Family: Pleosporaceae Order: Pleosporales Class: Dothideomycetes Phylum: Ascomycota Superkingdom: Eukaryota |
| >gi|396464635|ref|XP_003836928.1| similar to mitochondrial aspartate aminotransferase [Leptosphaeria maculans JN3] gi|312213481|emb|CBX93563.1| similar to mitochondrial aspartate aminotransferase [Leptosphaeria maculans JN3] | Back alignment and taxonomy information |
|---|
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 191/384 (49%), Positives = 246/384 (64%), Gaps = 42/384 (10%)
Query: 155 KGFNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKL 214
+ F D +PKK+NLGVGAYR + GKPYVLPSV+EAE++I E +LD EYA I G KF +
Sbjct: 45 EAFKADSNPKKINLGVGAYRDDKGKPYVLPSVREAEKKIVESSLDKEYAGITGVPKFTEA 104
Query: 215 AAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRF 274
A +LAYG D +NR+A+ Q ISG+G+LR+G AFLER YP KT+Y PTP+W H
Sbjct: 105 ALKLAYGSDSTPLTENRVAVTQTISGTGALRIGGAFLERHYPHAKTIYIPTPSWANHAAV 164
Query: 275 CTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQ 334
DS L V YRY++ T GLDF GM+ DIK MP+ SI+ L +HNPTGVD +E QW +
Sbjct: 165 FKDSGLKVEKYRYYNKDTIGLDFDGMVADIKKMPKNSIILLHACAHNPTGVDPTEQQWLK 224
Query: 335 LAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERV 394
+A VK+ +PFFDMAY G SGD DKDAF+LR+F K+ + LAQSF+KNMGLYGERV
Sbjct: 225 IAEAVKEGGHFPFFDMAYQGFASGDTDKDAFALRHFIKQGLRPVLAQSFAKNMGLYGERV 284
Query: 395 GTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMS 454
G FS++ ++DE +R+ SQ+KIL+R YSNPP+HGARI +EIL++ L
Sbjct: 285 GAFSIVCESADEKKRVDSQIKILVRPLYSNPPVHGARIASEILNNASL------------ 332
Query: 455 QLKILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKG 514
QW E K M++RI ++R LK + G
Sbjct: 333 ------------------------------NKQWLGEVKDMADRIITMRALLKENLEKLG 362
Query: 515 SKKNWDHITNQKGMFCYTGLSASQ 538
SK++W HIT+Q GMF YTGL+A Q
Sbjct: 363 SKQDWSHITSQIGMFAYTGLTAEQ 386
|
Source: Leptosphaeria maculans JN3 Species: Leptosphaeria maculans Genus: Leptosphaeria Family: Leptosphaeriaceae Order: Pleosporales Class: Dothideomycetes Phylum: Ascomycota Superkingdom: Eukaryota |
| >gi|449300498|gb|EMC96510.1| hypothetical protein BAUCODRAFT_33868 [Baudoinia compniacensis UAMH 10762] | Back alignment and taxonomy information |
|---|
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 194/396 (48%), Positives = 247/396 (62%), Gaps = 47/396 (11%)
Query: 155 KGFNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKL 214
+ F KD K+NLGVGAYR + GKPYVLPSVK+AE++I +NLD EYA I G F K
Sbjct: 46 EAFKKDSASNKINLGVGAYRDDKGKPYVLPSVKQAEQKILSQNLDKEYAGITGVPDFTKA 105
Query: 215 AAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRF 274
AA LAYG D K+ R+AI Q ISG+G+LR+G AFL+RFYPG KT+Y PTP+W H
Sbjct: 106 AALLAYGPDSKPLKEGRVAITQTISGTGALRIGGAFLQRFYPGSKTIYIPTPSWANHKAV 165
Query: 275 CTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQ 334
+DS L V YRY++ T GLDF GM+EDIK MP S++ L +HNPTGVD + +QWR
Sbjct: 166 FSDSGLEVKQYRYYNKDTIGLDFDGMVEDIKNMPSGSMVLLHACAHNPTGVDPTHEQWRA 225
Query: 335 LAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERV 394
++ V+ YPFFDMAY G SGD D DA+++RYF ++ CL+QSF+KNMGLYGERV
Sbjct: 226 ISDAVQSGGHYPFFDMAYQGFASGDTDYDAYAVRYFVEQGHTPCLSQSFAKNMGLYGERV 285
Query: 395 GTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMS 454
G FS++T + +E R+ SQ+KIL+R YSNPP+HGARI + IL+DP
Sbjct: 286 GAFSIVTASPEEKARVDSQIKILVRPLYSNPPVHGARIASTILNDP-------------- 331
Query: 455 QLKILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKG 514
L QW E KGM++RI +R LK + G
Sbjct: 332 ----------------------------SLNKQWLGEVKGMADRIIQMRALLKENLEKLG 363
Query: 515 SKKNWDHITNQKGMFCYTGLSASQGMSNRISSIREE 550
SK W+HIT+Q GMF YTGL+A Q +S + EE
Sbjct: 364 SKHQWNHITDQIGMFAYTGLTAEQ-----MSKLAEE 394
|
Source: Baudoinia compniacensis UAMH 10762 Species: Baudoinia compniacensis Genus: Baudoinia Family: Teratosphaeriaceae Order: Capnodiales Class: Dothideomycetes Phylum: Ascomycota Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 583 | ||||||
| MGI|MGI:95792 | 430 | Got2 "glutamate oxaloacetate t | 0.564 | 0.765 | 0.485 | 1.8e-95 | |
| RGD|2722 | 430 | Got2 "glutamic-oxaloacetic tra | 0.564 | 0.765 | 0.485 | 1.8e-95 | |
| ASPGD|ASPL0000046209 | 429 | AN1993 [Emericella nidulans (t | 0.499 | 0.678 | 0.536 | 3e-95 | |
| UNIPROTKB|P00505 | 430 | GOT2 "Aspartate aminotransfera | 0.536 | 0.727 | 0.507 | 3.8e-95 | |
| UNIPROTKB|Q4R559 | 430 | GOT2 "Aspartate aminotransfera | 0.509 | 0.690 | 0.521 | 4.8e-95 | |
| UNIPROTKB|Q5REB0 | 430 | GOT2 "Aspartate aminotransfera | 0.509 | 0.690 | 0.521 | 4.8e-95 | |
| WB|WBGene00015778 | 414 | got-2.2 [Caenorhabditis elegan | 0.524 | 0.739 | 0.521 | 2.1e-94 | |
| UNIPROTKB|Q28F67 | 427 | got2 "Aspartate aminotransfera | 0.564 | 0.770 | 0.479 | 2.6e-94 | |
| UNIPROTKB|P08907 | 401 | GOT2 "Aspartate aminotransfera | 0.509 | 0.740 | 0.515 | 2.3e-93 | |
| UNIPROTKB|P12344 | 430 | GOT2 "Aspartate aminotransfera | 0.509 | 0.690 | 0.511 | 2.3e-93 |
| MGI|MGI:95792 Got2 "glutamate oxaloacetate transaminase 2, mitochondrial" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 836 (299.3 bits), Expect = 1.8e-95, Sum P(2) = 1.8e-95
Identities = 162/334 (48%), Positives = 226/334 (67%)
Query: 149 PLKQQLKGFNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGD 208
P+ + F +D + KKMNLGVGAYR ++GKPYVLPSV++AE +I KNLD EY IGG
Sbjct: 43 PILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAAKNLDKEYLPIGGL 102
Query: 209 AKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTW 268
A+FCK +A+LA GE+ K R VQ ISG+G+LRVG +FL+RF+ + V+ P P+W
Sbjct: 103 AEFCKASAELALGENNEVLKSGRFVTVQTISGTGALRVGASFLQRFFKFSRDVFLPKPSW 162
Query: 269 NGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLS 328
H D+ + + YRY+D KT G DF+G +EDI +PE+S+L L +HNPTGVD
Sbjct: 163 GNHTPIFRDAGMQLQGYRYYDPKTCGFDFSGALEDISKIPEQSVLLLHACAHNPTGVDPR 222
Query: 329 EDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMG 388
+QW+++A VVK+++L+ FFDMAY G SGD DKDA+++R+F ++ +CL QS++KNMG
Sbjct: 223 PEQWKEIASVVKKKNLFAFFDMAYQGFASGDGDKDAWAVRHFIEQGINVCLCQSYAKNMG 282
Query: 389 LYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQ-CD 447
LYGERVG F+V+ ++E +R+ SQLKILIR YSNPP++GARI IL+ P L+ Q
Sbjct: 283 LYGERVGAFTVVCKDAEEAKRVESQLKILIRPLYSNPPLNGARIAATILTSPDLRKQWLQ 342
Query: 448 ET----ERIMSQLKILIRGFYSNPPIHGARIVTE 477
E +RI+S L+ H + +T+
Sbjct: 343 EVKGMADRIISMRTQLVSNLKKEGSSHNWQHITD 376
|
|
| RGD|2722 Got2 "glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 836 (299.3 bits), Expect = 1.8e-95, Sum P(2) = 1.8e-95
Identities = 162/334 (48%), Positives = 225/334 (67%)
Query: 149 PLKQQLKGFNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGD 208
P+ + F +D + KKMNLGVGAYR ++GKPYVLPSV++AE +I KNLD EY IGG
Sbjct: 43 PILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAGKNLDKEYLPIGGL 102
Query: 209 AKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTW 268
A FCK +A+LA GE+ K R VQ ISG+G+LRVG +FL+RF+ + V+ P P+W
Sbjct: 103 ADFCKASAELALGENSEVLKSGRFVTVQTISGTGALRVGASFLQRFFKFSRDVFLPKPSW 162
Query: 269 NGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLS 328
H D+ + + YRY+D KT G DF+G +EDI +PE+S+L L +HNPTGVD
Sbjct: 163 GNHTPIFRDAGMQLQGYRYYDPKTCGFDFSGALEDISKIPEQSVLLLHACAHNPTGVDPR 222
Query: 329 EDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMG 388
+QW+++A VVK+++L+ FFDMAY G SGD DKDA+++R+F ++ +CL QS++KNMG
Sbjct: 223 PEQWKEMAAVVKKKNLFAFFDMAYQGFASGDGDKDAWAVRHFIEQGINVCLCQSYAKNMG 282
Query: 389 LYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQ-CD 447
LYGERVG F+V+ ++E +R+ SQLKILIR YSNPP++GARI IL+ P L+ Q
Sbjct: 283 LYGERVGAFTVVCKDAEEAKRVESQLKILIRPLYSNPPLNGARIAATILTSPDLRKQWLQ 342
Query: 448 ET----ERIMSQLKILIRGFYSNPPIHGARIVTE 477
E +RI+S L+ H + +T+
Sbjct: 343 EVKGMADRIISMRTQLVSNLKKEGSSHNWQHITD 376
|
|
| ASPGD|ASPL0000046209 AN1993 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 847 (303.2 bits), Expect = 3.0e-95, Sum P(2) = 3.0e-95
Identities = 156/291 (53%), Positives = 207/291 (71%)
Query: 155 KGFNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKL 214
+ + D +K+NLGVGAYR + GKPYVLPSV+ AE ++ D EYA I G F K
Sbjct: 48 EAYKADSFKEKINLGVGAYRDDQGKPYVLPSVRAAEDKVVASRFDKEYAGITGIPSFTKA 107
Query: 215 AAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRF 274
AAQLAYG D P K++RL I Q ISG+G+LR+G AFL+RFYPG K +Y PTP+W H
Sbjct: 108 AAQLAYGADSPVLKEDRLVITQSISGTGALRIGGAFLQRFYPGAKKIYLPTPSWANHNAV 167
Query: 275 CTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQ 334
DS L V YRY++ T GLDF G++ED+KA P SI+ L +HNPTGVD ++DQWRQ
Sbjct: 168 FKDSGLEVEKYRYYNKDTIGLDFEGLVEDLKAAPNNSIILLHACAHNPTGVDPTQDQWRQ 227
Query: 335 LAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERV 394
++ V+K++ + FFDMAY G SG+ D DAF+ R+F ++ + L QSF+KNMGLYGERV
Sbjct: 228 ISNVMKEKGHFAFFDMAYQGFASGNADTDAFAPRHFVEQGHNIALCQSFAKNMGLYGERV 287
Query: 395 GTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQ 445
G FS++ +++E +R+ SQ+KILIR FYSNPP+HGAR+ + I++DP L Q
Sbjct: 288 GAFSLVCESAEEKKRVDSQIKILIRPFYSNPPVHGARVASTIMNDPALNKQ 338
|
|
| UNIPROTKB|P00505 GOT2 "Aspartate aminotransferase, mitochondrial" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 846 (302.9 bits), Expect = 3.8e-95, Sum P(2) = 3.8e-95
Identities = 159/313 (50%), Positives = 220/313 (70%)
Query: 149 PLKQQLKGFNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGD 208
P+ + F +D + KKMNLGVGAYR ++GKPYVLPSV++AE +I KNLD EY IGG
Sbjct: 43 PILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAAKNLDKEYLPIGGL 102
Query: 209 AKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTW 268
A+FCK +A+LA GE+ K R VQ ISG+G+LR+G +FL+RF+ + V+ P PTW
Sbjct: 103 AEFCKASAELALGENSEVLKSGRFVTVQTISGTGALRIGASFLQRFFKFSRDVFLPKPTW 162
Query: 269 NGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLS 328
H D+ + + YRY+D KT G DF G +EDI +PE+S+L L +HNPTGVD
Sbjct: 163 GNHTPIFRDAGMQLQGYRYYDPKTCGFDFTGAVEDISKIPEQSVLLLHACAHNPTGVDPR 222
Query: 329 EDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMG 388
+QW+++A VVK+R+L+ FFDMAY G SGD DKDA+++R+F ++ +CL QS++KNMG
Sbjct: 223 PEQWKEIATVVKKRNLFAFFDMAYQGFASGDGDKDAWAVRHFIEQGINVCLCQSYAKNMG 282
Query: 389 LYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDE 448
LYGERVG F+++ +DE +R+ SQLKILIR YSNPP++GARI IL+ P L+ Q +
Sbjct: 283 LYGERVGAFTMVCKDADEAKRVESQLKILIRPMYSNPPLNGARIAAAILNTPDLRKQWLQ 342
Query: 449 TERIMSQLKILIR 461
++M+ I +R
Sbjct: 343 EVKVMADRIIGMR 355
|
|
| UNIPROTKB|Q4R559 GOT2 "Aspartate aminotransferase, mitochondrial" [Macaca fascicularis (taxid:9541)] | Back alignment and assigned GO terms |
|---|
Score = 837 (299.7 bits), Expect = 4.8e-95, Sum P(2) = 4.8e-95
Identities = 155/297 (52%), Positives = 212/297 (71%)
Query: 149 PLKQQLKGFNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGD 208
P+ + F +D + KKMNLGVGAYR ++GKPYVLPSV++AE +I KNLD EY IGG
Sbjct: 43 PILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAAKNLDKEYLPIGGL 102
Query: 209 AKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTW 268
A+FCK +A+LA GE+ K R VQ ISG+G+LR+G +FL+RF+ + V+ P P+W
Sbjct: 103 AEFCKASAELALGENSEVLKSGRFVTVQTISGTGALRIGASFLQRFFKFSRDVFLPKPSW 162
Query: 269 NGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLS 328
H D+ + + YRY+D KT G DF G +EDI +PE+S+L L +HNPTGVD
Sbjct: 163 GNHTPIFRDAGMQLQGYRYYDPKTCGFDFTGAVEDISKIPEQSVLLLHACAHNPTGVDPR 222
Query: 329 EDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMG 388
+QW+++A VVK+R+L+ FFDMAY G SGD DKDA+++R+F ++ +CL QS++KNMG
Sbjct: 223 PEQWKEIATVVKKRNLFAFFDMAYQGFASGDGDKDAWAVRHFIEQGINVCLCQSYAKNMG 282
Query: 389 LYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQ 445
LYGERVG F+++ +DE +R+ SQLKILIR YSNPP++GARI IL+ P L+ Q
Sbjct: 283 LYGERVGAFTMVCKDADEAKRVESQLKILIRPMYSNPPLNGARIAAAILNTPDLRKQ 339
|
|
| UNIPROTKB|Q5REB0 GOT2 "Aspartate aminotransferase, mitochondrial" [Pongo abelii (taxid:9601)] | Back alignment and assigned GO terms |
|---|
Score = 837 (299.7 bits), Expect = 4.8e-95, Sum P(2) = 4.8e-95
Identities = 155/297 (52%), Positives = 212/297 (71%)
Query: 149 PLKQQLKGFNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGD 208
P+ + F +D + KKMNLGVGAYR ++GKPYVLPSV++AE +I KNLD EY IGG
Sbjct: 43 PILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAAKNLDKEYLPIGGL 102
Query: 209 AKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTW 268
A+FCK +A+LA GE+ K R VQ ISG+G+LR+G +FL+RF+ + V+ P P+W
Sbjct: 103 AEFCKASAELALGENSEVLKSGRFVTVQTISGTGALRIGASFLQRFFKFSRDVFLPKPSW 162
Query: 269 NGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLS 328
H D+ + + YRY+D KT G DF G +EDI +PE+S+L L +HNPTGVD
Sbjct: 163 GNHTPIFRDAGMQLQGYRYYDPKTCGFDFTGAVEDISKIPEQSVLLLHACAHNPTGVDPR 222
Query: 329 EDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMG 388
+QW+++A VVK+R+L+ FFDMAY G SGD DKDA+++R+F ++ +CL QS++KNMG
Sbjct: 223 PEQWKEIATVVKKRNLFAFFDMAYQGFASGDGDKDAWAVRHFIEQGINVCLCQSYAKNMG 282
Query: 389 LYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQ 445
LYGERVG F+++ +DE +R+ SQLKILIR YSNPP++GARI IL+ P L+ Q
Sbjct: 283 LYGERVGAFTMVCKDADEAKRVESQLKILIRPMYSNPPLNGARIAAAILNTPDLRKQ 339
|
|
| WB|WBGene00015778 got-2.2 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 830 (297.2 bits), Expect = 2.1e-94, Sum P(2) = 2.1e-94
Identities = 160/307 (52%), Positives = 212/307 (69%)
Query: 155 KGFNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKL 214
+ F D +PKK+NLGVGAYR + GKP+VLPSVKEAER++ NLD EYA I G +F KL
Sbjct: 34 EAFKADSNPKKINLGVGAYRDDQGKPFVLPSVKEAERQVIAANLDKEYAGIVGLPEFTKL 93
Query: 215 AAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRF 274
+AQLA GE+ K+ R+ Q ISG+G+LR+G+ FL + Y K +Y PTPTW HV
Sbjct: 94 SAQLALGENSDVIKNKRIFTTQSISGTGALRIGSEFLSK-YAKTKVIYQPTPTWGNHVPI 152
Query: 275 CTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQ 334
+ ++V YRY+D T G D G + DI +PE S + L +HNPTGVD S DQW++
Sbjct: 153 FKFAGVDVKQYRYYDKSTCGFDETGALADIAQIPEGSTILLHACAHNPTGVDPSRDQWKK 212
Query: 335 LAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERV 394
++ +VK+R+L+ FFDMAY G SGD D DAF++RYF ++ + L+QSF+KNMGLYGERV
Sbjct: 213 ISDIVKKRNLFVFFDMAYQGFASGDVDNDAFAVRYFVEQGHNIVLSQSFAKNMGLYGERV 272
Query: 395 GTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMS 454
G FSV+T +DE R+ SQ+KILIR YSNPP+HGARI + IL+DP L Q ++M+
Sbjct: 273 GAFSVVTSDADEAARVASQVKILIRPLYSNPPVHGARIASRILADPALNKQWLGDVKLMA 332
Query: 455 QLKILIR 461
I +R
Sbjct: 333 DRIITMR 339
|
|
| UNIPROTKB|Q28F67 got2 "Aspartate aminotransferase, mitochondrial" [Xenopus (Silurana) tropicalis (taxid:8364)] | Back alignment and assigned GO terms |
|---|
Score = 822 (294.4 bits), Expect = 2.6e-94, Sum P(2) = 2.6e-94
Identities = 160/334 (47%), Positives = 224/334 (67%)
Query: 149 PLKQQLKGFNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGD 208
P+ + F +D + KKMNLGVGAYR ++GKPYVL SV++AE ++ KNLD EY IGG
Sbjct: 40 PILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLSSVRKAEAQLASKNLDKEYLPIGGL 99
Query: 209 AKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTW 268
A+F + +AQLA GE+ A + R VQ ISG+GSLRVG FL+RFY + VY P P+W
Sbjct: 100 AEFARASAQLALGENCDAIQSGRFITVQTISGTGSLRVGANFLQRFYKYSRDVYLPKPSW 159
Query: 269 NGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLS 328
H D+ L V YRY+D KT G DF G ++DI +PE+SI+ +HNPTGVD
Sbjct: 160 GNHTPIFRDAGLEVKGYRYYDPKTCGFDFTGALDDISKIPEQSIILFHACAHNPTGVDPK 219
Query: 329 EDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMG 388
++QW++LA ++K R L+PFFDMAY G SGD ++DA+++R+F +E + L+QS++KNMG
Sbjct: 220 QEQWKELAALIKSRRLFPFFDMAYQGFASGDTNRDAWAVRHFIQEGINVVLSQSYAKNMG 279
Query: 389 LYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQ-CD 447
LYGERVG F+V+ ++E +R+ SQLKILIR YSNPP++GARI IL+ P L+ +
Sbjct: 280 LYGERVGAFTVVCSDAEEAKRVESQLKILIRPMYSNPPLNGARIAAAILTQPDLRKEWLQ 339
Query: 448 ETE----RIMSQLKILIRGFYSNPPIHGARIVTE 477
E + RI+S + L+ IH + +++
Sbjct: 340 EVKGMANRIISMREQLVSNLKKEGSIHNWQHISD 373
|
|
| UNIPROTKB|P08907 GOT2 "Aspartate aminotransferase, mitochondrial" [Equus caballus (taxid:9796)] | Back alignment and assigned GO terms |
|---|
Score = 826 (295.8 bits), Expect = 2.3e-93, Sum P(2) = 2.3e-93
Identities = 153/297 (51%), Positives = 212/297 (71%)
Query: 149 PLKQQLKGFNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGD 208
P+ + + +D + KKMNLGVGAYR ++GKPYVLPSV++AE +I KNLD EY IGG
Sbjct: 14 PILGVTEAYKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAAKNLDKEYLPIGGL 73
Query: 209 AKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTW 268
A+FCK +A+LA GE+ A K R VQ ISG+G+LR+G FL+RF+ + V+ P P+W
Sbjct: 74 AEFCKASAELALGENSEALKSGRYVTVQSISGTGALRIGANFLQRFFKFSRDVFLPKPSW 133
Query: 269 NGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLS 328
H D+ L + AYRY+D KT G D G +EDI +P++SI+ L +HNPTGVD
Sbjct: 134 GNHTPIFRDAGLQLHAYRYYDPKTCGFDVTGALEDISKIPQQSIILLHACAHNPTGVDPR 193
Query: 329 EDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMG 388
+QW+++A +VK+ +L+ FFDMAY G SGD +KDA+++RYF ++ +CL QS++KNMG
Sbjct: 194 PEQWKEIATLVKKNNLFAFFDMAYQGFASGDGNKDAWAVRYFIEQGINVCLCQSYAKNMG 253
Query: 389 LYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQ 445
LYGERVG F+++ +DE +R+ SQLKILIR YSNPP++GARI + IL+ P L+ Q
Sbjct: 254 LYGERVGAFTMVCKDADEAKRVESQLKILIRPLYSNPPLNGARIASTILTSPDLRKQ 310
|
|
| UNIPROTKB|P12344 GOT2 "Aspartate aminotransferase, mitochondrial" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 819 (293.4 bits), Expect = 2.3e-93, Sum P(2) = 2.3e-93
Identities = 152/297 (51%), Positives = 211/297 (71%)
Query: 149 PLKQQLKGFNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGD 208
P+ + F +D + KKMNLGVGAYR ++GKPYVLPSV++AE +I KNLD EY I G
Sbjct: 43 PILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAAKNLDKEYLPIAGL 102
Query: 209 AKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTW 268
A+FCK +A+LA GE+ K R VQ ISG+G+LR+G +FL+RF+ + V+ P PTW
Sbjct: 103 AEFCKASAELALGENNEVLKSGRYVTVQTISGTGALRIGASFLQRFFKFSRDVFLPKPTW 162
Query: 269 NGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLS 328
H D+ + + +YRY+D KT G DF G +EDI +P +S++ L +HNPTGVD
Sbjct: 163 GNHTPIFRDAGMQLQSYRYYDPKTCGFDFTGAIEDISKIPAQSVILLHACAHNPTGVDPR 222
Query: 329 EDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMG 388
+QW+++A VVK+ +L+ FFDMAY G SGD +KDA+++R+F ++ +CL QS++KNMG
Sbjct: 223 PEQWKEMATVVKKNNLFAFFDMAYQGFASGDGNKDAWAVRHFIEQGINVCLCQSYAKNMG 282
Query: 389 LYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQ 445
LYGERVG F+V+ ++E +R+ SQLKILIR YSNPPI+GARI + IL+ P L+ Q
Sbjct: 283 LYGERVGAFTVVCKDAEEAKRVESQLKILIRPMYSNPPINGARIASTILTSPDLRKQ 339
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| P74861 | TYRB_SALTY | 2, ., 6, ., 1, ., 5, 7 | 0.3172 | 0.6380 | 0.9370 | yes | N/A |
| P44425 | AAT_HAEIN | 2, ., 6, ., 1, ., 1 | 0.3042 | 0.6037 | 0.8888 | yes | N/A |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 583 | |||
| PLN02397 | 423 | PLN02397, PLN02397, aspartate transaminase | 1e-176 | |
| PTZ00376 | 404 | PTZ00376, PTZ00376, aspartate aminotransferase; Pr | 1e-167 | |
| COG1448 | 396 | COG1448, TyrB, Aspartate/tyrosine/aromatic aminotr | 1e-134 | |
| PRK09257 | 396 | PRK09257, PRK09257, aromatic amino acid aminotrans | 1e-130 | |
| pfam00155 | 357 | pfam00155, Aminotran_1_2, Aminotransferase class I | 3e-66 | |
| cd00609 | 350 | cd00609, AAT_like, Aspartate aminotransferase fami | 7e-34 | |
| PLN02397 | 423 | PLN02397, PLN02397, aspartate transaminase | 8e-27 | |
| PLN02397 | 423 | PLN02397, PLN02397, aspartate transaminase | 2e-26 | |
| PTZ00376 | 404 | PTZ00376, PTZ00376, aspartate aminotransferase; Pr | 4e-22 | |
| PTZ00376 | 404 | PTZ00376, PTZ00376, aspartate aminotransferase; Pr | 1e-21 | |
| PRK09257 | 396 | PRK09257, PRK09257, aromatic amino acid aminotrans | 5e-15 | |
| PRK09257 | 396 | PRK09257, PRK09257, aromatic amino acid aminotrans | 5e-15 | |
| COG1448 | 396 | COG1448, TyrB, Aspartate/tyrosine/aromatic aminotr | 9e-15 | |
| COG1448 | 396 | COG1448, TyrB, Aspartate/tyrosine/aromatic aminotr | 9e-15 | |
| COG0436 | 393 | COG0436, COG0436, Aspartate/tyrosine/aromatic amin | 6e-08 | |
| pfam00155 | 357 | pfam00155, Aminotran_1_2, Aminotransferase class I | 2e-07 | |
| pfam00155 | 357 | pfam00155, Aminotran_1_2, Aminotransferase class I | 1e-06 | |
| PRK06836 | 394 | PRK06836, PRK06836, aspartate aminotransferase; Pr | 2e-04 | |
| PRK08960 | 387 | PRK08960, PRK08960, hypothetical protein; Provisio | 5e-04 | |
| PRK07309 | 391 | PRK07309, PRK07309, aromatic amino acid aminotrans | 0.001 | |
| PRK06348 | 384 | PRK06348, PRK06348, aspartate aminotransferase; Pr | 0.003 |
| >gnl|CDD|215222 PLN02397, PLN02397, aspartate transaminase | Back alignment and domain information |
|---|
Score = 504 bits (1300), Expect = e-176
Identities = 177/382 (46%), Positives = 240/382 (62%), Gaps = 43/382 (11%)
Query: 157 FNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAA 216
F DP P K+NLGVGAYR E+GKP VL V++AE+R+ + + EY I G A+F KL+A
Sbjct: 42 FLADPSPVKLNLGVGAYRTEEGKPVVLNVVRKAEQRLLAGSRNKEYLPIEGLAEFNKLSA 101
Query: 217 QLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCT 276
+LAYG D PA K+NR+A VQ +SG+GSLR+G FL RFYPG T+Y P PTW H
Sbjct: 102 KLAYGADSPAIKENRVATVQCLSGTGSLRLGAEFLARFYPG-STIYIPNPTWGNHHNIFR 160
Query: 277 DSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLA 336
D+ + V YRY+D KT GLDF G++ED+KA P+ S + L +HNPTGVD + +QW Q++
Sbjct: 161 DAGVPVRTYRYYDPKTRGLDFDGLLEDLKAAPDGSFVLLHACAHNPTGVDPTPEQWEQIS 220
Query: 337 VVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGT 396
++K ++ PFFD AY G SGD D DA S+R F ++ ++ +AQS++KNMGLYGERVG
Sbjct: 221 DLIKSKNHLPFFDSAYQGFASGDLDADAQSVRMFVEDGHEILVAQSYAKNMGLYGERVGA 280
Query: 397 FSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQL 456
SV+ ++D R+ SQLK++ R P+
Sbjct: 281 LSVVCKSADVAVRVKSQLKLIAR------PM----------------------------- 305
Query: 457 KILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSK 516
YSNPPIHGA IV IL DP+L ++W +E KGM++RI S+R++L + +GS
Sbjct: 306 -------YSNPPIHGASIVATILGDPELFSEWTKELKGMADRIISMRQKLYDALEARGSP 358
Query: 517 KNWDHITNQKGMFCYTGLSASQ 538
+W HIT Q GMF +TGL+ Q
Sbjct: 359 GDWSHITKQIGMFSFTGLNKEQ 380
|
Length = 423 |
| >gnl|CDD|240390 PTZ00376, PTZ00376, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 480 bits (1239), Expect = e-167
Identities = 177/382 (46%), Positives = 238/382 (62%), Gaps = 42/382 (10%)
Query: 157 FNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAA 216
F DP P K+NLG+GAYR E+GKPYVL SV++AE+ I EKNLD EY I G F + A
Sbjct: 23 FKADPSPSKVNLGIGAYRDENGKPYVLESVRKAEKIIAEKNLDKEYLPIEGLQSFIEAAQ 82
Query: 217 QLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCT 276
+L +GE A + R+A VQ +SG+G+LR+G FL+RF P TVY PTW HV
Sbjct: 83 KLLFGEASYALAEKRIATVQALSGTGALRLGFEFLKRFLPAGTTVYVSNPTWPNHVNIFK 142
Query: 277 DSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLA 336
+ LNV YRY+D KT GLDF GM+ED++ P S++ L +HNPTGVD +E+QW+++A
Sbjct: 143 SAGLNVKEYRYYDPKTKGLDFDGMLEDLRTAPNGSVVLLHACAHNPTGVDPTEEQWKEIA 202
Query: 337 VVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGT 396
V+K+++L PFFDMAY G SGD DKDA+++R FA+ + +AQSFSKNMGLYGER+G
Sbjct: 203 DVMKRKNLIPFFDMAYQGFASGDLDKDAYAIRLFAERGVEFLVAQSFSKNMGLYGERIGA 262
Query: 397 FSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQL 456
++ +N +E ++SQL
Sbjct: 263 LHIVC---------------------ANK---------------------EEAANVLSQL 280
Query: 457 KILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSK 516
K++IR YS+PPIHGARI ILSDP+L+A+W E K MS RI ++R+ L ++ GS
Sbjct: 281 KLIIRPMYSSPPIHGARIADRILSDPELRAEWLSELKEMSGRIQNMRQLLYDELKALGSP 340
Query: 517 KNWDHITNQKGMFCYTGLSASQ 538
+W+HI NQ GMF +TGL+ Q
Sbjct: 341 GDWEHIINQIGMFSFTGLTKEQ 362
|
Length = 404 |
| >gnl|CDD|224365 COG1448, TyrB, Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 396 bits (1019), Expect = e-134
Identities = 161/392 (41%), Positives = 227/392 (57%), Gaps = 47/392 (11%)
Query: 147 IKPLKQQLKGFNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIG 206
I LK+ F DP P K+NLG+G Y+ EDGK VL +VK+AE+R+ E+ Y I
Sbjct: 13 ILGLKEA---FKADPRPNKVNLGIGVYKDEDGKTPVLRAVKKAEKRLLEQEKTKNYLPIE 69
Query: 207 GDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTP 266
G +F + +L +G D PA ++R+A VQ + G+G+LRV FL RF+P TV+ P
Sbjct: 70 GLPEFLEAVQKLLFGADSPALAEDRVATVQTLGGTGALRVAADFLARFFPD-ATVWISDP 128
Query: 267 TWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVD 326
TW H + L V Y Y+D +T GLDF GM+ D+K PE S++ L HNPTG+D
Sbjct: 129 TWPNHKAIFEAAGLEVETYPYYDAETKGLDFDGMLADLKTAPEGSVVLLHGCCHNPTGID 188
Query: 327 LSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKN 386
+E+QW++LA ++K+R L PFFD+AY G G ++DA++LR FA+ +L +A SFSKN
Sbjct: 189 PTEEQWQELADLIKERGLIPFFDIAYQGFADG-LEEDAYALRLFAEVGPELLVASSFSKN 247
Query: 387 MGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQC 446
GLYGERVG SV+ ++E A
Sbjct: 248 FGLYGERVGALSVVAEDAEE-------------------------------------AD- 269
Query: 447 DETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREEL 506
R++SQLK +IR YSNPP HGA +V IL++P+L+A+W +E + M RI +R+ L
Sbjct: 270 ----RVLSQLKAIIRTNYSNPPAHGAAVVATILNNPELRAEWEQELEEMRQRILEMRQAL 325
Query: 507 KSKILDKGSKKNWDHITNQKGMFCYTGLSASQ 538
+ G+ +N+D I +Q+GMF YTGLS Q
Sbjct: 326 VDALKALGAPRNFDFIISQRGMFSYTGLSPEQ 357
|
Length = 396 |
| >gnl|CDD|181731 PRK09257, PRK09257, aromatic amino acid aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 387 bits (997), Expect = e-130
Identities = 151/382 (39%), Positives = 207/382 (54%), Gaps = 44/382 (11%)
Query: 157 FNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAA 216
F DP P K+NLGVG Y+ E G+ VL +VK+AE R+ E Y I G A + +
Sbjct: 20 FRADPRPDKVNLGVGVYKDEQGRTPVLRAVKKAEARLLETETTKNYLPIEGLAAYRQAVQ 79
Query: 217 QLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCT 276
+L +G D PA R+A VQ G+G+LRVG FL+R +P V+ PTW H
Sbjct: 80 ELLFGADSPALAAGRVATVQTPGGTGALRVGADFLKRAFPD-AKVWVSDPTWPNHRAIFE 138
Query: 277 DSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLA 336
+ L V Y Y+D T GLDF M+ D+ P ++ L HNPTG DL+ +QW +LA
Sbjct: 139 AAGLEVKTYPYYDAATKGLDFDAMLADLSQAPAGDVVLLHGCCHNPTGADLTPEQWDELA 198
Query: 337 VVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGT 396
++K+R L PF D+AY G G ++DA+ LR FA +L +A SFSKN GLYGERVG
Sbjct: 199 ELLKERGLIPFLDIAYQGFGDG-LEEDAYGLRAFAAAGLELLVASSFSKNFGLYGERVGA 257
Query: 397 FSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQL 456
SV+ ++E +R++SQLK IR +N
Sbjct: 258 LSVVAEDAEEADRVLSQLKATIR---TN-------------------------------- 282
Query: 457 KILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSK 516
YSNPP HGA IV IL+DP+L+A+W E + M RI ++R+ L + KG
Sbjct: 283 -------YSNPPAHGAAIVATILNDPELRAEWEAELEEMRERIKAMRQLLVEALKAKGPS 335
Query: 517 KNWDHITNQKGMFCYTGLSASQ 538
+++D I Q+GMF Y+GL+ Q
Sbjct: 336 RDFDFIARQRGMFSYSGLTPEQ 357
|
Length = 396 |
| >gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II | Back alignment and domain information |
|---|
Score = 219 bits (560), Expect = 3e-66
Identities = 97/375 (25%), Positives = 138/375 (36%), Gaps = 66/375 (17%)
Query: 163 PKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGE 222
K+NLG Y G+ LP+V +AE+ + Y G + + A+
Sbjct: 1 TDKINLGSNEYLGDS---GTLPAVAKAEKDALAGGTRNLYGPTDGLPELREALAKFLGRS 57
Query: 223 DFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNV 282
P K +R A V SG+G+ FL R PG + P PT+ ++R + V
Sbjct: 58 --PVLKLDREAAVVFGSGAGANIEALIFLLRLNPG-DAILVPAPTYPSYIRIFRLAGGEV 114
Query: 283 GAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQR 342
Y + + LDF + +K E + + L TS HNPTG + ++ +L + K+
Sbjct: 115 VRYPLYSSNDFHLDFDALEAALKEATEGNKVVLHTSPHNPTGTVATLEELEKLLDLAKEH 174
Query: 343 HLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTP 402
++ D AY G G DA + R E L + SFSK GL G RVG
Sbjct: 175 NILLLVDEAYAGFVFG--SLDAVATRALLAEGPNLLVVGSFSKAFGLAGWRVGYILG--- 229
Query: 403 TSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRG 462
++SQL+ L R FYS
Sbjct: 230 ----NAAVISQLRKLARPFYS--------------------------------------- 246
Query: 463 FYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHI 522
H LSDP L A EE M RI R+ L+ + G +
Sbjct: 247 -----STHLQAAAAAALSDPLLVASELEE---MRQRIKERRDYLRDGLEAAG----LSVL 294
Query: 523 TNQKGMFCYTGLSAS 537
+Q G F TGL
Sbjct: 295 PSQAGFFLLTGLDPE 309
|
Length = 357 |
| >gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family | Back alignment and domain information |
|---|
Score = 131 bits (332), Expect = 7e-34
Identities = 59/276 (21%), Positives = 98/276 (35%), Gaps = 24/276 (8%)
Query: 166 MNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFP 225
++L +G P V EA + Y G + + A+
Sbjct: 1 IDLSIGEPD-----FPPPPEVLEALAAAALRAGLLGYYPDPGLPELREAIAEWLGRRGGV 55
Query: 226 AFKDNRLAIVQGISGSGSLR-VGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGA 284
IV +L + A L PG V P PT+ G+ + V
Sbjct: 56 DVPPEE--IVVTNGAQEALSLLLRALLN---PG-DEVLVPDPTYPGYEAAARLAGAEVVP 109
Query: 285 YRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHL 344
+ G + + P+ +L+L + +NPTG LSE++ +LA + K+ +
Sbjct: 110 VPLDEE--GGFLLDLELLEAAKTPKTKLLYL-NNPNNPTGAVLSEEELEELAELAKKHGI 166
Query: 345 YPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTS 404
D AY L +D + ++ + +SFSK GL G R+G + + P
Sbjct: 167 LIISDEAYAELV---YDGEPPPALALLDAYERVIVLRSFSKTFGLPGLRIG-YLIAPP-- 220
Query: 405 DETERIMSQLKILIRGFYSNPPIHGARIVTEILSDP 440
E ++ +LK L+ S P L D
Sbjct: 221 ---EELLERLKKLLPYTTSGPSTLSQAAAAAALDDG 253
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. The major groups in this CD corresponds to Aspartate aminotransferase a, b and c, Tyrosine, Alanine, Aromatic-amino-acid, Glutamine phenylpyruvate, 1-Aminocyclopropane-1-carboxylate synthase, Histidinol-phosphate, gene products of malY and cobC, Valine-pyruvate aminotransferase and Rhizopine catabolism regulatory protein. Length = 350 |
| >gnl|CDD|215222 PLN02397, PLN02397, aspartate transaminase | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 8e-27
Identities = 41/75 (54%), Positives = 51/75 (68%), Gaps = 1/75 (1%)
Query: 2 AIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKT 61
A VQ +SG+GSLR+G FL RFYPG T+Y P PTW H D+ + V YRY+D KT
Sbjct: 118 ATVQCLSGTGSLRLGAEFLARFYPG-STIYIPNPTWGNHHNIFRDAGVPVRTYRYYDPKT 176
Query: 62 NGLDFAGMMEDIKLA 76
GLDF G++ED+K A
Sbjct: 177 RGLDFDGLLEDLKAA 191
|
Length = 423 |
| >gnl|CDD|215222 PLN02397, PLN02397, aspartate transaminase | Back alignment and domain information |
|---|
Score = 111 bits (281), Expect = 2e-26
Identities = 40/79 (50%), Positives = 55/79 (69%), Gaps = 1/79 (1%)
Query: 70 MEDIKLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYR 129
+++ ++A VQ +SG+GSLR+G FL RFYPG T+Y P PTW H D+ + V YR
Sbjct: 112 IKENRVATVQCLSGTGSLRLGAEFLARFYPG-STIYIPNPTWGNHHNIFRDAGVPVRTYR 170
Query: 130 YFDNKTNGLDFAGMMEDIK 148
Y+D KT GLDF G++ED+K
Sbjct: 171 YYDPKTRGLDFDGLLEDLK 189
|
Length = 423 |
| >gnl|CDD|240390 PTZ00376, PTZ00376, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 98.5 bits (246), Expect = 4e-22
Identities = 39/79 (49%), Positives = 51/79 (64%)
Query: 74 KLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDN 133
++A VQ +SG+G+LR+G FL+RF P TVY PTW HV + LNV YRY+D
Sbjct: 97 RIATVQALSGTGALRLGFEFLKRFLPAGTTVYVSNPTWPNHVNIFKSAGLNVKEYRYYDP 156
Query: 134 KTNGLDFAGMMEDIKPLKQ 152
KT GLDF GM+ED++
Sbjct: 157 KTKGLDFDGMLEDLRTAPN 175
|
Length = 404 |
| >gnl|CDD|240390 PTZ00376, PTZ00376, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 97.3 bits (243), Expect = 1e-21
Identities = 40/76 (52%), Positives = 51/76 (67%)
Query: 1 LAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNK 60
+A VQ +SG+G+LR+G FL+RF P TVY PTW HV + LNV YRY+D K
Sbjct: 98 IATVQALSGTGALRLGFEFLKRFLPAGTTVYVSNPTWPNHVNIFKSAGLNVKEYRYYDPK 157
Query: 61 TNGLDFAGMMEDIKLA 76
T GLDF GM+ED++ A
Sbjct: 158 TKGLDFDGMLEDLRTA 173
|
Length = 404 |
| >gnl|CDD|181731 PRK09257, PRK09257, aromatic amino acid aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 76.7 bits (190), Expect = 5e-15
Identities = 30/77 (38%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 75 LAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNK 134
+A VQ G+G+LRVG FL+R +P V+ PTW H + L V Y Y+D
Sbjct: 95 VATVQTPGGTGALRVGADFLKRAFPD-AKVWVSDPTWPNHRAIFEAAGLEVKTYPYYDAA 153
Query: 135 TNGLDFAGMMEDIKPLK 151
T GLDF M+ D+
Sbjct: 154 TKGLDFDAMLADLSQAP 170
|
Length = 396 |
| >gnl|CDD|181731 PRK09257, PRK09257, aromatic amino acid aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 76.7 bits (190), Expect = 5e-15
Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 1 LAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNK 60
+A VQ G+G+LRVG FL+R +P V+ PTW H + L V Y Y+D
Sbjct: 95 VATVQTPGGTGALRVGADFLKRAFPD-AKVWVSDPTWPNHRAIFEAAGLEVKTYPYYDAA 153
Query: 61 TNGLDFAGMMEDIK 74
T GLDF M+ D+
Sbjct: 154 TKGLDFDAMLADLS 167
|
Length = 396 |
| >gnl|CDD|224365 COG1448, TyrB, Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 9e-15
Identities = 34/75 (45%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 2 AIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKT 61
A VQ + G+G+LRV FL RF+P TV+ PTW H + L V Y Y+D +T
Sbjct: 96 ATVQTLGGTGALRVAADFLARFFPD-ATVWISDPTWPNHKAIFEAAGLEVETYPYYDAET 154
Query: 62 NGLDFAGMMEDIKLA 76
GLDF GM+ D+K A
Sbjct: 155 KGLDFDGMLADLKTA 169
|
Length = 396 |
| >gnl|CDD|224365 COG1448, TyrB, Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 9e-15
Identities = 33/73 (45%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 76 AIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKT 135
A VQ + G+G+LRV FL RF+P TV+ PTW H + L V Y Y+D +T
Sbjct: 96 ATVQTLGGTGALRVAADFLARFFPD-ATVWISDPTWPNHKAIFEAAGLEVETYPYYDAET 154
Query: 136 NGLDFAGMMEDIK 148
GLDF GM+ D+K
Sbjct: 155 KGLDFDGMLADLK 167
|
Length = 396 |
| >gnl|CDD|223513 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 6e-08
Identities = 35/171 (20%), Positives = 67/171 (39%), Gaps = 12/171 (7%)
Query: 302 EDI-KAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDF 360
ED+ A+ ++ + S +NPTG S+++ + + + ++ + D Y L +
Sbjct: 154 EDLEAAITPKTKAIILNSPNNPTGAVYSKEELKAIVELAREHDIIIISDEIYEELV---Y 210
Query: 361 DKDAF-SLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIR 419
D S+ A + SFSK G+ G R+G + V P E +++ L+ L
Sbjct: 211 DGAEHPSILELAGARDRTITINSFSKTYGMTGWRIG-WVVGPP-----EELIAALRKLKS 264
Query: 420 GFYSNPPIHGARIVTEILSDPKLKAQCDET-ERIMSQLKILIRGFYSNPPI 469
S P L+ P+ +E E + +L+ +
Sbjct: 265 YLTSCAPTPAQYAAIAALNGPQSDEVVEEMREEYRERRDLLVEALNEIGGL 315
|
Length = 393 |
| >gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 2e-07
Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 1/80 (1%)
Query: 78 VQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNG 137
V SG+G+ FL R PG + P PT+ ++R + V Y + +
Sbjct: 68 VVFGSGAGANIEALIFLLRLNPG-DAILVPAPTYPSYIRIFRLAGGEVVRYPLYSSNDFH 126
Query: 138 LDFAGMMEDIKPLKQQLKGF 157
LDF + +K + K
Sbjct: 127 LDFDALEAALKEATEGNKVV 146
|
Length = 357 |
| >gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 1e-06
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Query: 4 VQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNG 63
V SG+G+ FL R PG + P PT+ ++R + V Y + +
Sbjct: 68 VVFGSGAGANIEALIFLLRLNPG-DAILVPAPTYPSYIRIFRLAGGEVVRYPLYSSNDFH 126
Query: 64 LDFAGMMEDIK 74
LDF + +K
Sbjct: 127 LDFDALEAALK 137
|
Length = 357 |
| >gnl|CDD|180720 PRK06836, PRK06836, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 2e-04
Identities = 34/130 (26%), Positives = 64/130 (49%), Gaps = 19/130 (14%)
Query: 318 SSHNPTGVDLSEDQWRQLAVVVKQRH------LYPFFDMAYLGLTSGDFD--KDAFSLRY 369
S +NPTGV SE+ + LA +++++ +Y D Y + +D + + +Y
Sbjct: 176 SPNNPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIV---YDGAEVPYIFKY 232
Query: 370 FAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIR--GFYSNPPI 427
+ + + SFSK++ L GER+G + + P ++ + +++ L R GF N P
Sbjct: 233 YDNSI----VVYSFSKSLSLPGERIG-YIAVNPEMEDADDLVAALVFANRILGF-VNAPA 286
Query: 428 HGARIVTEIL 437
R+V + L
Sbjct: 287 LMQRVVAKCL 296
|
Length = 394 |
| >gnl|CDD|181595 PRK08960, PRK08960, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 5e-04
Identities = 30/94 (31%), Positives = 39/94 (41%), Gaps = 20/94 (21%)
Query: 309 ERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGD-------FD 361
++ L S NPTG LS D+ L+ ++ R + D Y GLT G D
Sbjct: 164 ADTVGALVASPANPTGTLLSRDELAALSQALRARGGHLVVDEIYHGLTYGVDAASVLEVD 223
Query: 362 KDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVG 395
DAF L SFSK G+ G R+G
Sbjct: 224 DDAFVL-------------NSFSKYFGMTGWRLG 244
|
Length = 387 |
| >gnl|CDD|235985 PRK07309, PRK07309, aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.001
Identities = 59/219 (26%), Positives = 88/219 (40%), Gaps = 28/219 (12%)
Query: 186 VKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLA---YGEDFPAFKDNRLAIVQGISG-- 240
VKEA +R + N H Y + G + + AA Y D+ +N + + G +
Sbjct: 48 VKEAAKRAIDANQSH-YTGMAGLLELRQAAADFVKEKYNLDYAP--ENEILVTIGATEAL 104
Query: 241 SGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDF--- 297
S SL TA LE PG V P P + G+ L D N DF
Sbjct: 105 SASL---TAILE---PG-DKVLLPAPAYPGYEPIVN---LVGAEIVEIDTTEN--DFVLT 152
Query: 298 AGMMED-IKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLT 356
M+E I ++ + NPTGV S +Q + LA V+K+ ++ D Y LT
Sbjct: 153 PEMLEKAILEQGDKLKAVILNYPANPTGVTYSREQIKALADVLKKYDIFVISDEVYSELT 212
Query: 357 SGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVG 395
+ S+ + + Q L SK+ + G R+G
Sbjct: 213 YT--GEPHVSIAEYLPD--QTILINGLSKSHAMTGWRIG 247
|
Length = 391 |
| >gnl|CDD|180537 PRK06348, PRK06348, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.003
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 318 SSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQL 377
S +NPTG S++ ++A + + L+ D Y G + F +D + A +
Sbjct: 170 SPNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFS---FYEDFVPMATLAGMPERT 226
Query: 378 CLAQSFSKNMGLYGERVGTFSVLTPT 403
SFSK+ + G R+G V+ P
Sbjct: 227 ITFGSFSKDFAMTGWRIGY--VIAPD 250
|
Length = 384 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 583 | |||
| COG1448 | 396 | TyrB Aspartate/tyrosine/aromatic aminotransferase | 100.0 | |
| PRK09257 | 396 | aromatic amino acid aminotransferase; Provisional | 100.0 | |
| PTZ00376 | 404 | aspartate aminotransferase; Provisional | 100.0 | |
| COG0436 | 393 | Aspartate/tyrosine/aromatic aminotransferase [Amin | 100.0 | |
| PLN02397 | 423 | aspartate transaminase | 100.0 | |
| COG1167 | 459 | ARO8 Transcriptional regulators containing a DNA-b | 100.0 | |
| KOG1411|consensus | 427 | 100.0 | ||
| KOG1412|consensus | 410 | 100.0 | ||
| KOG0257|consensus | 420 | 100.0 | ||
| PLN02368 | 407 | alanine transaminase | 100.0 | |
| PRK06855 | 433 | aminotransferase; Validated | 100.0 | |
| PLN00175 | 413 | aminotransferase family protein; Provisional | 100.0 | |
| PRK07366 | 388 | succinyldiaminopimelate transaminase; Validated | 100.0 | |
| PRK08636 | 403 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK07681 | 399 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK06348 | 384 | aspartate aminotransferase; Provisional | 100.0 | |
| PLN00143 | 409 | tyrosine/nicotianamine aminotransferase; Provision | 100.0 | |
| PRK06207 | 405 | aspartate aminotransferase; Provisional | 100.0 | |
| PLN02187 | 462 | rooty/superroot1 | 100.0 | |
| PRK08068 | 389 | transaminase; Reviewed | 100.0 | |
| PTZ00377 | 481 | alanine aminotransferase; Provisional | 100.0 | |
| PRK09276 | 385 | LL-diaminopimelate aminotransferase; Provisional | 100.0 | |
| PRK06290 | 410 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK09148 | 405 | aminotransferase; Validated | 100.0 | |
| TIGR03540 | 383 | DapC_direct LL-diaminopimelate aminotransferase. T | 100.0 | |
| PRK09147 | 396 | succinyldiaminopimelate transaminase; Provisional | 100.0 | |
| PLN02656 | 409 | tyrosine transaminase | 100.0 | |
| PLN02450 | 468 | 1-aminocyclopropane-1-carboxylate synthase | 100.0 | |
| PRK05942 | 394 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK07682 | 378 | hypothetical protein; Validated | 100.0 | |
| PLN02376 | 496 | 1-aminocyclopropane-1-carboxylate synthase | 100.0 | |
| PLN02231 | 534 | alanine transaminase | 100.0 | |
| PRK08960 | 387 | hypothetical protein; Provisional | 100.0 | |
| PLN00145 | 430 | tyrosine/nicotianamine aminotransferase; Provision | 100.0 | |
| PRK12414 | 384 | putative aminotransferase; Provisional | 100.0 | |
| TIGR01264 | 401 | tyr_amTase_E tyrosine aminotransferase, eukaryotic | 100.0 | |
| PRK15481 | 431 | transcriptional regulatory protein PtsJ; Provision | 100.0 | |
| PRK09082 | 386 | methionine aminotransferase; Validated | 100.0 | |
| PRK07683 | 387 | aminotransferase A; Validated | 100.0 | |
| TIGR03538 | 393 | DapC_gpp succinyldiaminopimelate transaminase. Thi | 100.0 | |
| PRK05839 | 374 | hypothetical protein; Provisional | 100.0 | |
| PTZ00433 | 412 | tyrosine aminotransferase; Provisional | 100.0 | |
| PRK07590 | 409 | L,L-diaminopimelate aminotransferase; Validated | 100.0 | |
| PRK08637 | 388 | hypothetical protein; Provisional | 100.0 | |
| PRK08912 | 387 | hypothetical protein; Provisional | 100.0 | |
| PLN02607 | 447 | 1-aminocyclopropane-1-carboxylate synthase | 100.0 | |
| PRK08175 | 395 | aminotransferase; Validated | 100.0 | |
| PRK13355 | 517 | bifunctional HTH-domain containing protein/aminotr | 100.0 | |
| PRK07337 | 388 | aminotransferase; Validated | 100.0 | |
| PRK05957 | 389 | aspartate aminotransferase; Provisional | 100.0 | |
| TIGR03537 | 350 | DapC succinyldiaminopimelate transaminase. Note: t | 100.0 | |
| PRK07309 | 391 | aromatic amino acid aminotransferase; Validated | 100.0 | |
| PRK06108 | 382 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK08361 | 391 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK06107 | 402 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK07550 | 386 | hypothetical protein; Provisional | 100.0 | |
| PRK07777 | 387 | aminotransferase; Validated | 100.0 | |
| PRK07324 | 373 | transaminase; Validated | 100.0 | |
| PRK02610 | 374 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK09440 | 416 | avtA valine--pyruvate transaminase; Provisional | 100.0 | |
| PRK08363 | 398 | alanine aminotransferase; Validated | 100.0 | |
| TIGR01265 | 403 | tyr_nico_aTase tyrosine/nicotianamine aminotransfe | 100.0 | |
| PRK09265 | 404 | aminotransferase AlaT; Validated | 100.0 | |
| PRK09275 | 527 | aspartate aminotransferase; Provisional | 100.0 | |
| PF00155 | 363 | Aminotran_1_2: Aminotransferase class I and II 1-a | 100.0 | |
| TIGR03542 | 402 | DAPAT_plant LL-diaminopimelate aminotransferase. T | 100.0 | |
| KOG0256|consensus | 471 | 100.0 | ||
| PRK07865 | 364 | N-succinyldiaminopimelate aminotransferase; Review | 100.0 | |
| COG1168 | 388 | MalY Bifunctional PLP-dependent enzyme with beta-c | 100.0 | |
| PRK07568 | 397 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK01533 | 366 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| TIGR03539 | 357 | DapC_actino succinyldiaminopimelate transaminase. | 100.0 | |
| PRK05764 | 393 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK06358 | 354 | threonine-phosphate decarboxylase; Provisional | 100.0 | |
| PRK06836 | 394 | aspartate aminotransferase; Provisional | 100.0 | |
| KOG0259|consensus | 447 | 100.0 | ||
| TIGR03801 | 521 | asp_4_decarbox aspartate 4-decarboxylase. This enz | 100.0 | |
| PRK03317 | 368 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK14809 | 357 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK05166 | 371 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK07392 | 360 | threonine-phosphate decarboxylase; Validated | 100.0 | |
| KOG0634|consensus | 472 | 100.0 | ||
| PRK08153 | 369 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 100.0 | |
| PRK03158 | 359 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PLN03026 | 380 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK09105 | 370 | putative aminotransferase; Provisional | 100.0 | |
| PRK05387 | 353 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK14808 | 335 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK14807 | 351 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK08056 | 356 | threonine-phosphate decarboxylase; Provisional | 100.0 | |
| PRK04870 | 356 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| COG0079 | 356 | HisC Histidinol-phosphate/aromatic aminotransferas | 100.0 | |
| PRK04781 | 364 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK03967 | 337 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK07908 | 349 | hypothetical protein; Provisional | 100.0 | |
| PRK06425 | 332 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| PRK06225 | 380 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK03321 | 352 | putative aminotransferase; Provisional | 100.0 | |
| PRK01688 | 351 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK02731 | 367 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| PRK05664 | 330 | threonine-phosphate decarboxylase; Reviewed | 100.0 | |
| PRK04635 | 354 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| TIGR01141 | 346 | hisC histidinol-phosphate aminotransferase. Histid | 100.0 | |
| PRK08354 | 311 | putative aminotransferase; Provisional | 100.0 | |
| PRK06959 | 339 | putative threonine-phosphate decarboxylase; Provis | 100.0 | |
| PRK00950 | 361 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| TIGR01140 | 330 | L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy | 100.0 | |
| COG1448 | 396 | TyrB Aspartate/tyrosine/aromatic aminotransferase | 99.97 | |
| COG3977 | 417 | Alanine-alpha-ketoisovalerate (or valine-pyruvate) | 99.96 | |
| cd00609 | 350 | AAT_like Aspartate aminotransferase family. This f | 99.95 | |
| KOG0258|consensus | 475 | 99.95 | ||
| PRK13238 | 460 | tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d | 99.95 | |
| KOG0633|consensus | 375 | 99.92 | ||
| cd00617 | 431 | Tnase_like Tryptophanase family (Tnase). This fami | 99.91 | |
| KOG1411|consensus | 427 | 99.91 | ||
| PRK10534 | 333 | L-threonine aldolase; Provisional | 99.9 | |
| PRK07049 | 427 | methionine gamma-lyase; Validated | 99.89 | |
| TIGR03576 | 346 | pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 | 99.88 | |
| TIGR00858 | 360 | bioF 8-amino-7-oxononanoate synthase. This model r | 99.88 | |
| PRK06939 | 397 | 2-amino-3-ketobutyrate coenzyme A ligase; Provisio | 99.88 | |
| PRK02627 | 396 | acetylornithine aminotransferase; Provisional | 99.87 | |
| TIGR01825 | 385 | gly_Cac_T_rel pyridoxal phosphate-dependent acyltr | 99.87 | |
| TIGR00707 | 379 | argD acetylornithine and succinylornithine aminotr | 99.87 | |
| cd06502 | 338 | TA_like Low-specificity threonine aldolase (TA). T | 99.87 | |
| PF12897 | 425 | Aminotran_MocR: Alanine-glyoxylate amino-transfera | 99.86 | |
| PLN02721 | 353 | threonine aldolase | 99.86 | |
| TIGR01822 | 393 | 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig | 99.86 | |
| KOG1412|consensus | 410 | 99.85 | ||
| PLN02242 | 418 | methionine gamma-lyase | 99.85 | |
| PRK05958 | 385 | 8-amino-7-oxononanoate synthase; Reviewed | 99.85 | |
| PRK06234 | 400 | methionine gamma-lyase; Provisional | 99.84 | |
| PRK03244 | 398 | argD acetylornithine aminotransferase; Provisional | 99.82 | |
| cd00378 | 402 | SHMT Serine-glycine hydroxymethyltransferase (SHMT | 99.82 | |
| PLN02822 | 481 | serine palmitoyltransferase | 99.82 | |
| PRK08247 | 366 | cystathionine gamma-synthase; Reviewed | 99.82 | |
| TIGR02539 | 370 | SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation | 99.81 | |
| cd06454 | 349 | KBL_like KBL_like; this family belongs to the pyri | 99.81 | |
| PRK01278 | 389 | argD acetylornithine transaminase protein; Provisi | 99.81 | |
| PRK08088 | 425 | 4-aminobutyrate aminotransferase; Validated | 99.81 | |
| PLN02483 | 489 | serine palmitoyltransferase | 99.81 | |
| TIGR02080 | 382 | O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. | 99.81 | |
| cd00610 | 413 | OAT_like Acetyl ornithine aminotransferase family. | 99.81 | |
| PRK06460 | 376 | hypothetical protein; Provisional | 99.8 | |
| TIGR03392 | 398 | FeS_syn_CsdA cysteine desulfurase, catalytic subun | 99.8 | |
| PRK08133 | 390 | O-succinylhomoserine sulfhydrylase; Validated | 99.8 | |
| PRK13392 | 410 | 5-aminolevulinate synthase; Provisional | 99.79 | |
| PRK08045 | 386 | cystathionine gamma-synthase; Provisional | 99.79 | |
| PRK08249 | 398 | cystathionine gamma-synthase; Provisional | 99.79 | |
| cd06452 | 361 | SepCysS Sep-tRNA:Cys-tRNA synthase. This family be | 99.79 | |
| cd00613 | 398 | GDC-P Glycine cleavage system P-protein, alpha- an | 99.79 | |
| PRK07503 | 403 | methionine gamma-lyase; Provisional | 99.78 | |
| PRK06767 | 386 | methionine gamma-lyase; Provisional | 99.77 | |
| PRK07811 | 388 | cystathionine gamma-synthase; Provisional | 99.77 | |
| PRK10874 | 401 | cysteine sulfinate desulfinase; Provisional | 99.77 | |
| PRK02936 | 377 | argD acetylornithine aminotransferase; Provisional | 99.76 | |
| TIGR00713 | 423 | hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi | 99.76 | |
| PRK07504 | 398 | O-succinylhomoserine sulfhydrylase; Reviewed | 99.76 | |
| TIGR01979 | 403 | sufS cysteine desulfurases, SufS subfamily. This m | 99.76 | |
| PRK08776 | 405 | cystathionine gamma-synthase; Provisional | 99.76 | |
| PRK05093 | 403 | argD bifunctional N-succinyldiaminopimelate-aminot | 99.76 | |
| PRK07050 | 394 | cystathionine beta-lyase; Provisional | 99.76 | |
| TIGR02379 | 376 | ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | 99.75 | |
| cd00614 | 369 | CGS_like CGS_like: Cystathionine gamma-synthase is | 99.75 | |
| TIGR01976 | 397 | am_tr_V_VC1184 cysteine desulfurase family protein | 99.75 | |
| PRK08861 | 388 | cystathionine gamma-synthase; Provisional | 99.75 | |
| PRK02948 | 381 | cysteine desulfurase; Provisional | 99.75 | |
| PRK08574 | 385 | cystathionine gamma-synthase; Provisional | 99.74 | |
| TIGR01326 | 418 | OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d | 99.74 | |
| TIGR01325 | 380 | O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. | 99.74 | |
| PRK07810 | 403 | O-succinylhomoserine sulfhydrylase; Provisional | 99.74 | |
| PRK07582 | 366 | cystathionine gamma-lyase; Validated | 99.74 | |
| PRK07179 | 407 | hypothetical protein; Provisional | 99.74 | |
| TIGR01328 | 391 | met_gam_lyase methionine gamma-lyase. This model d | 99.73 | |
| PRK04073 | 396 | rocD ornithine--oxo-acid transaminase; Provisional | 99.73 | |
| PRK09295 | 406 | bifunctional cysteine desulfurase/selenocysteine l | 99.73 | |
| cd06453 | 373 | SufS_like Cysteine desulfurase (SufS)-like. This f | 99.73 | |
| cd06450 | 345 | DOPA_deC_like DOPA decarboxylase family. This fami | 99.72 | |
| PLN02409 | 401 | serine--glyoxylate aminotransaminase | 99.72 | |
| TIGR03301 | 355 | PhnW-AepZ 2-aminoethylphosphonate aminotransferase | 99.71 | |
| PRK11658 | 379 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin | 99.71 | |
| PRK11706 | 375 | TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio | 99.71 | |
| TIGR01437 | 363 | selA_rel uncharacterized pyridoxal phosphate-depen | 99.71 | |
| PRK09331 | 387 | Sep-tRNA:Cys-tRNA synthetase; Provisional | 99.71 | |
| TIGR03403 | 382 | nifS_epsilon cysteine desulfurase, NifS family, ep | 99.7 | |
| PRK12381 | 406 | bifunctional succinylornithine transaminase/acetyl | 99.7 | |
| cd06451 | 356 | AGAT_like Alanine-glyoxylate aminotransferase (AGA | 99.7 | |
| PLN02855 | 424 | Bifunctional selenocysteine lyase/cysteine desulfu | 99.7 | |
| PRK04260 | 375 | acetylornithine aminotransferase; Provisional | 99.69 | |
| PRK09028 | 394 | cystathionine beta-lyase; Provisional | 99.68 | |
| PRK09064 | 407 | 5-aminolevulinate synthase; Validated | 99.68 | |
| PRK05939 | 397 | hypothetical protein; Provisional | 99.67 | |
| TIGR01821 | 402 | 5aminolev_synth 5-aminolevulinic acid synthase. Th | 99.67 | |
| PRK00011 | 416 | glyA serine hydroxymethyltransferase; Reviewed | 99.67 | |
| PRK07269 | 364 | cystathionine gamma-synthase; Reviewed | 99.67 | |
| cd00615 | 294 | Orn_deC_like Ornithine decarboxylase family. This | 99.67 | |
| PRK13479 | 368 | 2-aminoethylphosphonate--pyruvate transaminase; Pr | 99.66 | |
| PRK08248 | 431 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.66 | |
| TIGR01324 | 377 | cysta_beta_ly_B cystathionine beta-lyase, bacteria | 99.65 | |
| PRK00854 | 401 | rocD ornithine--oxo-acid transaminase; Reviewed | 99.65 | |
| PRK00451 | 447 | glycine dehydrogenase subunit 1; Validated | 99.65 | |
| PRK06702 | 432 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.65 | |
| TIGR01329 | 378 | cysta_beta_ly_E cystathionine beta-lyase, eukaryot | 99.65 | |
| PRK08064 | 390 | cystathionine beta-lyase; Provisional | 99.64 | |
| PRK07671 | 377 | cystathionine beta-lyase; Provisional | 99.64 | |
| PRK09792 | 421 | 4-aminobutyrate transaminase; Provisional | 99.64 | |
| PRK06084 | 425 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.63 | |
| PLN00144 | 382 | acetylornithine transaminase | 99.63 | |
| PLN02509 | 464 | cystathionine beta-lyase | 99.62 | |
| PLN03227 | 392 | serine palmitoyltransferase-like protein; Provisio | 99.61 | |
| TIGR02326 | 363 | transamin_PhnW 2-aminoethylphosphonate--pyruvate t | 99.61 | |
| PRK05968 | 389 | hypothetical protein; Provisional | 99.61 | |
| cd01494 | 170 | AAT_I Aspartate aminotransferase (AAT) superfamily | 99.6 | |
| TIGR03235 | 353 | DNA_S_dndA cysteine desulfurase DndA. This model d | 99.6 | |
| PRK06918 | 451 | 4-aminobutyrate aminotransferase; Reviewed | 99.59 | |
| PTZ00125 | 400 | ornithine aminotransferase-like protein; Provision | 99.59 | |
| PRK05967 | 395 | cystathionine beta-lyase; Provisional | 99.58 | |
| PRK13393 | 406 | 5-aminolevulinate synthase; Provisional | 99.58 | |
| PRK06176 | 380 | cystathionine gamma-synthase/cystathionine beta-ly | 99.58 | |
| PRK07505 | 402 | hypothetical protein; Provisional | 99.58 | |
| TIGR02006 | 402 | IscS cysteine desulfurase IscS. This model represe | 99.57 | |
| TIGR03402 | 379 | FeS_nifS cysteine desulfurase NifS. Members of thi | 99.56 | |
| TIGR03588 | 380 | PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin | 99.56 | |
| TIGR03531 | 444 | selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr | 99.55 | |
| PRK14012 | 404 | cysteine desulfurase; Provisional | 99.55 | |
| TIGR00700 | 420 | GABAtrnsam 4-aminobutyrate aminotransferase, proka | 99.55 | |
| TIGR01977 | 376 | am_tr_V_EF2568 cysteine desulfurase family protein | 99.54 | |
| TIGR03812 | 373 | tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe | 99.54 | |
| PRK13520 | 371 | L-tyrosine decarboxylase; Provisional | 99.54 | |
| PRK08360 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.52 | |
| PRK04366 | 481 | glycine dehydrogenase subunit 2; Validated | 99.51 | |
| PRK04612 | 408 | argD acetylornithine transaminase protein; Provisi | 99.5 | |
| PRK15407 | 438 | lipopolysaccharide biosynthesis protein RfbH; Prov | 99.5 | |
| PRK05994 | 427 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.5 | |
| PLN02624 | 474 | ornithine-delta-aminotransferase | 99.49 | |
| TIGR01885 | 401 | Orn_aminotrans ornithine aminotransferase. This mo | 99.49 | |
| PRK00062 | 426 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.48 | |
| TIGR03246 | 397 | arg_catab_astC succinylornithine transaminase fami | 99.47 | |
| PLN02651 | 364 | cysteine desulfurase | 99.47 | |
| cd00616 | 352 | AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa | 99.47 | |
| PRK07495 | 425 | 4-aminobutyrate aminotransferase; Provisional | 99.44 | |
| PRK06777 | 421 | 4-aminobutyrate aminotransferase; Provisional | 99.41 | |
| PLN02955 | 476 | 8-amino-7-oxononanoate synthase | 99.4 | |
| PRK08134 | 433 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.38 | |
| PRK07812 | 436 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.35 | |
| COG0399 | 374 | WecE Predicted pyridoxal phosphate-dependent enzym | 99.32 | |
| PRK08117 | 433 | 4-aminobutyrate aminotransferase; Provisional | 99.31 | |
| TIGR02618 | 450 | tyr_phenol_ly tyrosine phenol-lyase. This model de | 99.31 | |
| TIGR02407 | 412 | ectoine_ectB diaminobutyrate--2-oxoglutarate amino | 99.31 | |
| PRK08114 | 395 | cystathionine beta-lyase; Provisional | 99.31 | |
| PF01053 | 386 | Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent | 99.29 | |
| PRK05937 | 370 | 8-amino-7-oxononanoate synthase; Provisional | 99.26 | |
| PF01041 | 363 | DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe | 99.25 | |
| COG0156 | 388 | BioF 7-keto-8-aminopelargonate synthetase and rela | 99.25 | |
| PRK09264 | 425 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.25 | |
| COG0520 | 405 | csdA Selenocysteine lyase/Cysteine desulfurase [Po | 99.25 | |
| PRK05613 | 437 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.24 | |
| PRK13237 | 460 | tyrosine phenol-lyase; Provisional | 99.24 | |
| PRK06058 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.24 | |
| PRK04311 | 464 | selenocysteine synthase; Provisional | 99.22 | |
| PRK06434 | 384 | cystathionine gamma-lyase; Validated | 99.17 | |
| TIGR00709 | 442 | dat 2,4-diaminobutyrate 4-transaminases. This fami | 99.12 | |
| PRK08593 | 445 | 4-aminobutyrate aminotransferase; Provisional | 99.11 | |
| KOG0053|consensus | 409 | 99.1 | ||
| COG0626 | 396 | MetC Cystathionine beta-lyases/cystathionine gamma | 99.1 | |
| PRK05964 | 423 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.08 | |
| TIGR00474 | 454 | selA seryl-tRNA(sec) selenium transferase. In bact | 99.06 | |
| PF00266 | 371 | Aminotran_5: Aminotransferase class-V; InterPro: I | 99.03 | |
| PLN02994 | 153 | 1-aminocyclopropane-1-carboxylate synthase | 99.03 | |
| PF01212 | 290 | Beta_elim_lyase: Beta-eliminating lyase; InterPro: | 99.02 | |
| COG2008 | 342 | GLY1 Threonine aldolase [Amino acid transport and | 98.97 | |
| PRK03715 | 395 | argD acetylornithine transaminase protein; Provisi | 98.94 | |
| PRK06541 | 460 | hypothetical protein; Provisional | 98.94 | |
| PRK02769 | 380 | histidine decarboxylase; Provisional | 98.94 | |
| KOG1549|consensus | 428 | 98.94 | ||
| TIGR01814 | 406 | kynureninase kynureninase. This model describes ky | 98.93 | |
| PF01276 | 417 | OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; | 98.88 | |
| COG1104 | 386 | NifS Cysteine sulfinate desulfinase/cysteine desul | 98.87 | |
| COG2873 | 426 | MET17 O-acetylhomoserine sulfhydrylase [Amino acid | 98.86 | |
| PRK13034 | 416 | serine hydroxymethyltransferase; Reviewed | 98.85 | |
| COG0075 | 383 | Serine-pyruvate aminotransferase/archaeal aspartat | 98.82 | |
| PF04864 | 363 | Alliinase_C: Allinase; InterPro: IPR006948 Allicin | 98.81 | |
| PLN03032 | 374 | serine decarboxylase; Provisional | 98.81 | |
| PRK05769 | 441 | 4-aminobutyrate aminotransferase; Provisional | 98.79 | |
| PRK13580 | 493 | serine hydroxymethyltransferase; Provisional | 98.73 | |
| PLN02482 | 474 | glutamate-1-semialdehyde 2,1-aminomutase | 98.72 | |
| TIGR03372 | 442 | putres_am_tran putrescine aminotransferase. Member | 98.72 | |
| KOG1368|consensus | 384 | 98.72 | ||
| PRK12389 | 428 | glutamate-1-semialdehyde aminotransferase; Provisi | 98.66 | |
| COG1103 | 382 | Archaea-specific pyridoxal phosphate-dependent enz | 98.66 | |
| PRK04013 | 364 | argD acetylornithine/acetyl-lysine aminotransferas | 98.63 | |
| COG4992 | 404 | ArgD Ornithine/acetylornithine aminotransferase [A | 98.62 | |
| COG0160 | 447 | GabT 4-aminobutyrate aminotransferase and related | 98.62 | |
| PRK00615 | 433 | glutamate-1-semialdehyde aminotransferase; Provisi | 98.61 | |
| COG0076 | 460 | GadB Glutamate decarboxylase and related PLP-depen | 98.61 | |
| COG0001 | 432 | HemL Glutamate-1-semialdehyde aminotransferase [Co | 98.59 | |
| PRK11522 | 459 | putrescine--2-oxoglutarate aminotransferase; Provi | 98.56 | |
| PRK15029 | 755 | arginine decarboxylase; Provisional | 98.54 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 98.54 | |
| PRK05639 | 457 | 4-aminobutyrate aminotransferase; Provisional | 98.53 | |
| PRK06062 | 451 | hypothetical protein; Provisional | 98.52 | |
| PRK07046 | 453 | aminotransferase; Validated | 98.5 | |
| PRK07986 | 428 | adenosylmethionine--8-amino-7-oxononanoate transam | 98.48 | |
| PTZ00094 | 452 | serine hydroxymethyltransferase; Provisional | 98.48 | |
| cd00611 | 355 | PSAT_like Phosphoserine aminotransferase (PSAT) fa | 98.46 | |
| PRK06943 | 453 | adenosylmethionine--8-amino-7-oxononanoate transam | 98.46 | |
| PRK13360 | 442 | omega amino acid--pyruvate transaminase; Provision | 98.46 | |
| PLN02760 | 504 | 4-aminobutyrate:pyruvate transaminase | 98.45 | |
| PRK05965 | 459 | hypothetical protein; Provisional | 98.45 | |
| PRK06082 | 459 | 4-aminobutyrate aminotransferase; Provisional | 98.45 | |
| PRK07482 | 461 | hypothetical protein; Provisional | 98.45 | |
| PLN02263 | 470 | serine decarboxylase | 98.44 | |
| PRK12403 | 460 | putative aminotransferase; Provisional | 98.42 | |
| PRK07030 | 466 | adenosylmethionine--8-amino-7-oxononanoate transam | 98.41 | |
| TIGR01788 | 431 | Glu-decarb-GAD glutamate decarboxylase. This model | 98.4 | |
| TIGR00508 | 427 | bioA adenosylmethionine-8-amino-7-oxononanoate tra | 98.4 | |
| PF00202 | 339 | Aminotran_3: Aminotransferase class-III; InterPro: | 98.4 | |
| PRK09221 | 445 | beta alanine--pyruvate transaminase; Provisional | 98.37 | |
| PRK06173 | 429 | adenosylmethionine--8-amino-7-oxononanoate transam | 98.37 | |
| PRK06916 | 460 | adenosylmethionine--8-amino-7-oxononanoate transam | 98.36 | |
| TIGR02617 | 467 | tnaA_trp_ase tryptophanase, leader peptide-associa | 98.36 | |
| PF06838 | 403 | Met_gamma_lyase: Methionine gamma-lyase ; InterPro | 98.35 | |
| PRK06105 | 460 | aminotransferase; Provisional | 98.34 | |
| TIGR01364 | 349 | serC_1 phosphoserine aminotransferase. This model | 98.34 | |
| PRK08742 | 472 | adenosylmethionine--8-amino-7-oxononanoate transam | 98.33 | |
| PRK07481 | 449 | hypothetical protein; Provisional | 98.32 | |
| PRK07036 | 466 | hypothetical protein; Provisional | 98.3 | |
| PRK07483 | 443 | hypothetical protein; Provisional | 98.3 | |
| PRK07678 | 451 | aminotransferase; Validated | 98.3 | |
| PRK06938 | 464 | diaminobutyrate--2-oxoglutarate aminotransferase; | 98.29 | |
| PRK15400 | 714 | lysine decarboxylase CadA; Provisional | 98.29 | |
| PRK05630 | 422 | adenosylmethionine--8-amino-7-oxononanoate transam | 98.28 | |
| PLN02880 | 490 | tyrosine decarboxylase | 98.27 | |
| PLN02590 | 539 | probable tyrosine decarboxylase | 98.26 | |
| PRK06917 | 447 | hypothetical protein; Provisional | 98.26 | |
| PRK06209 | 431 | glutamate-1-semialdehyde 2,1-aminomutase; Provisio | 98.26 | |
| PLN03226 | 475 | serine hydroxymethyltransferase; Provisional | 98.25 | |
| PLN02271 | 586 | serine hydroxymethyltransferase | 98.23 | |
| PRK06931 | 459 | diaminobutyrate--2-oxoglutarate aminotransferase; | 98.21 | |
| COG1921 | 395 | SelA Selenocysteine synthase [seryl-tRNASer seleni | 98.21 | |
| PRK07480 | 456 | putative aminotransferase; Validated | 98.19 | |
| PRK15399 | 713 | lysine decarboxylase LdcC; Provisional | 98.16 | |
| KOG1401|consensus | 433 | 98.15 | ||
| PRK05355 | 360 | 3-phosphoserine/phosphohydroxythreonine aminotrans | 98.13 | |
| TIGR03799 | 522 | NOD_PanD_pyr putative pyridoxal-dependent aspartat | 98.12 | |
| PRK06149 | 972 | hypothetical protein; Provisional | 98.11 | |
| PLN02724 | 805 | Molybdenum cofactor sulfurase | 98.1 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 98.1 | |
| PF00464 | 399 | SHMT: Serine hydroxymethyltransferase; InterPro: I | 98.08 | |
| PF00282 | 373 | Pyridoxal_deC: Pyridoxal-dependent decarboxylase c | 98.07 | |
| KOG1359|consensus | 417 | 98.06 | ||
| PRK13578 | 720 | ornithine decarboxylase; Provisional | 98.05 | |
| COG1982 | 557 | LdcC Arginine/lysine/ornithine decarboxylases [Ami | 97.97 | |
| PRK06148 | 1013 | hypothetical protein; Provisional | 97.93 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 97.92 | |
| COG0112 | 413 | GlyA Glycine/serine hydroxymethyltransferase [Amin | 97.91 | |
| KOG1360|consensus | 570 | 97.9 | ||
| PRK03080 | 378 | phosphoserine aminotransferase; Provisional | 97.88 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 97.83 | |
| KOG1404|consensus | 442 | 97.81 | ||
| PRK08297 | 443 | L-lysine aminotransferase; Provisional | 97.79 | |
| TIGR03251 | 431 | LAT_fam L-lysine 6-transaminase. Characterized mem | 97.7 | |
| TIGR00699 | 464 | GABAtrns_euk 4-aminobutyrate aminotransferase, euk | 97.68 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 97.59 | |
| KOG2862|consensus | 385 | 97.59 | ||
| PF03841 | 367 | SelA: L-seryl-tRNA selenium transferase; InterPro: | 97.48 | |
| TIGR03811 | 608 | tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu | 97.44 | |
| TIGR01366 | 361 | serC_3 phosphoserine aminotransferase, putative. T | 97.44 | |
| PLN02452 | 365 | phosphoserine transaminase | 97.39 | |
| PLN02397 | 423 | aspartate transaminase | 97.39 | |
| PLN02974 | 817 | adenosylmethionine-8-amino-7-oxononanoate transami | 97.39 | |
| COG4100 | 416 | Cystathionine beta-lyase family protein involved i | 97.36 | |
| TIGR01365 | 374 | serC_2 phosphoserine aminotransferase, Methanosarc | 97.18 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 97.11 | |
| COG0161 | 449 | BioA Adenosylmethionine-8-amino-7-oxononanoate ami | 97.08 | |
| KOG1357|consensus | 519 | 97.07 | ||
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 96.97 | |
| KOG1383|consensus | 491 | 96.64 | ||
| PTZ00376 | 404 | aspartate aminotransferase; Provisional | 96.58 | |
| COG1003 | 496 | GcvP Glycine cleavage system protein P (pyridoxal- | 96.52 | |
| PF05889 | 389 | SLA_LP_auto_ag: Soluble liver antigen/liver pancre | 96.39 | |
| PRK12462 | 364 | phosphoserine aminotransferase; Provisional | 96.26 | |
| COG3033 | 471 | TnaA Tryptophanase [Amino acid transport and metab | 96.07 | |
| PRK09257 | 396 | aromatic amino acid aminotransferase; Provisional | 95.92 | |
| PF02347 | 429 | GDC-P: Glycine cleavage system P-protein; InterPro | 95.52 | |
| KOG3843|consensus | 432 | 95.02 | ||
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 94.81 | |
| COG0403 | 450 | GcvP Glycine cleavage system protein P (pyridoxal- | 94.3 | |
| PF00155 | 363 | Aminotran_1_2: Aminotransferase class I and II 1-a | 93.91 | |
| KOG1403|consensus | 452 | 93.64 | ||
| KOG1402|consensus | 427 | 93.12 | ||
| KOG1358|consensus | 467 | 92.63 | ||
| KOG0628|consensus | 511 | 92.0 | ||
| KOG0629|consensus | 510 | 91.88 | ||
| COG3844 | 407 | Kynureninase [Amino acid transport and metabolism] | 90.9 | |
| TIGR01264 | 401 | tyr_amTase_E tyrosine aminotransferase, eukaryotic | 90.69 | |
| PLN00145 | 430 | tyrosine/nicotianamine aminotransferase; Provision | 90.03 | |
| PRK08637 | 388 | hypothetical protein; Provisional | 89.92 | |
| PRK07550 | 386 | hypothetical protein; Provisional | 88.53 | |
| KOG0634|consensus | 472 | 88.45 | ||
| PRK08912 | 387 | hypothetical protein; Provisional | 88.42 | |
| KOG1405|consensus | 484 | 86.87 | ||
| PRK09082 | 386 | methionine aminotransferase; Validated | 86.78 | |
| PRK07309 | 391 | aromatic amino acid aminotransferase; Validated | 85.63 | |
| PRK08361 | 391 | aspartate aminotransferase; Provisional | 85.12 | |
| cd01494 | 170 | AAT_I Aspartate aminotransferase (AAT) superfamily | 84.84 | |
| PRK08636 | 403 | aspartate aminotransferase; Provisional | 84.78 | |
| PLN02656 | 409 | tyrosine transaminase | 84.62 | |
| TIGR03540 | 383 | DapC_direct LL-diaminopimelate aminotransferase. T | 84.49 | |
| PRK07337 | 388 | aminotransferase; Validated | 84.08 | |
| COG2102 | 223 | Predicted ATPases of PP-loop superfamily [General | 83.83 | |
| KOG2040|consensus | 1001 | 83.48 | ||
| TIGR01265 | 403 | tyr_nico_aTase tyrosine/nicotianamine aminotransfe | 82.87 | |
| PRK07777 | 387 | aminotransferase; Validated | 82.68 | |
| PRK05957 | 389 | aspartate aminotransferase; Provisional | 82.49 | |
| PTZ00433 | 412 | tyrosine aminotransferase; Provisional | 82.48 | |
| PTZ00377 | 481 | alanine aminotransferase; Provisional | 82.26 | |
| PLN02187 | 462 | rooty/superroot1 | 81.06 | |
| PRK09276 | 385 | LL-diaminopimelate aminotransferase; Provisional | 81.05 | |
| PRK06108 | 382 | aspartate aminotransferase; Provisional | 81.02 |
| >COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-54 Score=426.86 Aligned_cols=376 Identities=44% Similarity=0.804 Sum_probs=345.8
Q ss_pred ccchhhHhhccccccCCCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCC
Q psy14428 145 EDIKPLKQQLKGFNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDF 224 (583)
Q Consensus 145 ~~~~~i~~l~~~~~~~~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g 224 (583)
.+.++|+.+.+.++++.++++|||++|.+.++.|.++..+.|++|.+.+.+......|.|..|.+++++++++.+.....
T Consensus 8 ~p~DpIlgL~e~f~~D~R~~KVNLgIGvY~de~Gk~pvl~aV~~Ae~~l~~~~~~k~Yl~i~G~~~f~~~~~~llFG~d~ 87 (396)
T COG1448 8 APADPILGLKEAFKADPRPNKVNLGIGVYKDEDGKTPVLRAVKKAEKRLLEQEKTKNYLPIEGLPEFLEAVQKLLFGADS 87 (396)
T ss_pred CCCCchhHHHHHHhcCCCcCeeeeeeeeeeCCCCCcchhHHHHHHHHHhhccccccccCCcCCcHHHHHHHHHHhcCCCc
Confidence 36889999999999999999999999999999999989999999999999887788999999999999999999987666
Q ss_pred CCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHH
Q psy14428 225 PAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDI 304 (583)
Q Consensus 225 ~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l 304 (583)
..++.++|.-+||.||++|+.+.+.++..+.+ ..+|++++|+|+++..+|+.+|.++..+|++|.++.++|++.+.+.|
T Consensus 88 ~~l~~~Rv~t~Qt~GGTGAL~~~A~fl~~~~~-~~~vwis~PtW~NH~~If~~aGl~v~~Y~Yyd~~~~~~df~~mla~L 166 (396)
T COG1448 88 PALAEDRVATVQTLGGTGALRVAADFLARFFP-DATVWISDPTWPNHKAIFEAAGLEVETYPYYDAETKGLDFDGMLADL 166 (396)
T ss_pred HHHHhhhHhheecCCcchHHHHHHHHHHHhCC-CceEEeCCCCcHhHHHHHHhcCCceeeeeccccccccccHHHHHHHH
Confidence 66888999999999999999999999988887 67899999999999999999999999999999998999999999999
Q ss_pred HcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCc
Q psy14428 305 KAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFS 384 (583)
Q Consensus 305 ~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~S 384 (583)
++.+++..+++-+++|||||..++.++|++|+++.++++++.+.|-+|++|..+ .+++...++.++.....+++..|||
T Consensus 167 ~~a~~~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r~lip~~D~AYQGF~~G-leeDa~~lR~~a~~~~~~lva~S~S 245 (396)
T COG1448 167 KTAPEGSVVLLHGCCHNPTGIDPTEEQWQELADLIKERGLIPFFDIAYQGFADG-LEEDAYALRLFAEVGPELLVASSFS 245 (396)
T ss_pred HhCCCCCEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCeeeeehhhhhhccc-hHHHHHHHHHHHHhCCcEEEEehhh
Confidence 999999999999999999999999999999999999999999999999999977 4567888888887777799999999
Q ss_pred ccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhcc
Q psy14428 385 KNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFY 464 (583)
Q Consensus 385 K~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~ 464 (583)
|+||+.|.|+|.+.+++++++ ...++.+|++..+|..|
T Consensus 246 KnfgLYgERVGa~~vva~~~~------------------------------------------~a~~v~sqlk~~iR~~y 283 (396)
T COG1448 246 KNFGLYGERVGALSVVAEDAE------------------------------------------EADRVLSQLKAIIRTNY 283 (396)
T ss_pred hhhhhhhhccceeEEEeCCHH------------------------------------------HHHHHHHHHHHHHHhcc
Confidence 999999999999998777643 34466778889999999
Q ss_pred CCCccchhhHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCChhhhhhhhh
Q psy14428 465 SNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSASQGMSNRI 544 (583)
Q Consensus 465 ~~~p~~g~~i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~~~~~~~~~ 544 (583)
++||.+|+.++..+++||++++.|.+++..||+|+.++|..|.+.|++.+.+.+|+++..|.|||+|++++++|+++
T Consensus 284 SnPP~~Ga~vva~IL~~p~Lra~W~~El~~Mr~Ri~~mR~~lv~~L~~~~~~~~f~~i~~Q~GMFsy~Gls~~QV~r--- 360 (396)
T COG1448 284 SNPPAHGAAVVATILNNPELRAEWEQELEEMRQRILEMRQALVDALKALGAPRNFDFIISQRGMFSYTGLSPEQVDR--- 360 (396)
T ss_pred CCCchhhHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchHhhcCceeecCCCCHHHHHH---
Confidence 99999999999999999999999999999999999999999999999998888899999999999999999999877
Q ss_pred hhhHHHHHHHHhhcCCCccccccccCCcceeecCCCCC
Q psy14428 545 SSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSAS 582 (583)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (583)
+++++.+++++ . |++|.+||++.
T Consensus 361 --Lree~~IY~v~------------s-GRi~vaGl~~~ 383 (396)
T COG1448 361 --LREEFGIYLVA------------S-GRINVAGLNTS 383 (396)
T ss_pred --HHHhccEEEec------------C-CeeeeccCChh
Confidence 78888777653 3 68888888764
|
|
| >PRK09257 aromatic amino acid aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-50 Score=426.49 Aligned_cols=370 Identities=42% Similarity=0.731 Sum_probs=285.4
Q ss_pred hhHhhccccccCCCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCC
Q psy14428 149 PLKQQLKGFNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFK 228 (583)
Q Consensus 149 ~i~~l~~~~~~~~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~ 228 (583)
++..+...++....++.|+|+.|.+.++...++..+.+.+++.++.++....+|++..|.++||++|++|+.+.++..++
T Consensus 12 ~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~p~~~~l~~a~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~ 91 (396)
T PRK09257 12 PILGLMEAFRADPRPDKVNLGVGVYKDEQGRTPVLRAVKKAEARLLETETTKNYLPIEGLAAYRQAVQELLFGADSPALA 91 (396)
T ss_pred hHHHHHHHHhhCCCcCcEecceeeEECCCCCEeccHHHHHHHHHhcccccCCCcCCCCCCHHHHHHHHHHhcCCCCcccc
Confidence 44444443333345678999999874332222224788998888775544568999999999999999999887767778
Q ss_pred CCCe--EEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHc
Q psy14428 229 DNRL--AIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKA 306 (583)
Q Consensus 229 ~~~I--~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~ 306 (583)
+++| ++ |+|+++|+.++..++.. +++||+|++++|+|+.|..+++..|++++.+|+.+++++++|++.+++.+.+
T Consensus 92 ~~~i~v~i--T~Ga~~al~~~~~~l~~-~~pGd~Vlv~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~ 168 (396)
T PRK09257 92 AGRVATVQ--TPGGTGALRVGADFLKR-AFPDAKVWVSDPTWPNHRAIFEAAGLEVKTYPYYDAATKGLDFDAMLADLSQ 168 (396)
T ss_pred cCeEEEEe--cCCccHHHHHHHHHHHH-hCCCCeEEECCCCcccHHHHHHHcCCcEEEEeccccccCccCHHHHHHHHHh
Confidence 9988 88 99999999997443322 3569999999999999999999999999999984445589999999998865
Q ss_pred CCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCccc
Q psy14428 307 MPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKN 386 (583)
Q Consensus 307 ~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~ 386 (583)
..++++++++||||||||.++|.+++++|+++|++|+++||+||+|.+|.++.. .+..++.++.+..++||+++||||+
T Consensus 169 ~~~~~~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~-~~~~~~~~~~~~~~~vi~i~SfSK~ 247 (396)
T PRK09257 169 APAGDVVLLHGCCHNPTGADLTPEQWDELAELLKERGLIPFLDIAYQGFGDGLE-EDAYGLRAFAAAGLELLVASSFSKN 247 (396)
T ss_pred CCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccchH-HHHHHHHHHHhcCCcEEEEEEcCCc
Confidence 445678899999999999999999999999999999999999999999987521 2345666655455789999999999
Q ss_pred ccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCC
Q psy14428 387 MGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSN 466 (583)
Q Consensus 387 ~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~ 466 (583)
|++||+|+||+++.+++++....+++++....+..+.+++.+.|.+++++++++.
T Consensus 248 ~~~~GlRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~------------------------- 302 (396)
T PRK09257 248 FGLYGERVGALSVVAEDAEEADRVLSQLKATIRTNYSNPPAHGAAIVATILNDPE------------------------- 302 (396)
T ss_pred CccccccceeEEEEeCCHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHhCCHH-------------------------
Confidence 9999999999985324332222456666666666777788999999999887642
Q ss_pred CccchhhHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCChhhhhhhhhhh
Q psy14428 467 PPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSASQGMSNRISS 546 (583)
Q Consensus 467 ~p~~g~~i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~~~~~~~~~~~ 546 (583)
+.+.|.+++++++++|.++|+.+.+.|++.+.++.+.+..+++|+|.|..++.+..++
T Consensus 303 -----------------~~~~~~~~~~~~r~~~~~rr~~l~~~L~~~~~~~~~~~~~p~gg~~~w~~l~~~~~~~----- 360 (396)
T PRK09257 303 -----------------LRAEWEAELEEMRERIKAMRQLLVEALKAKGPSRDFDFIARQRGMFSYSGLTPEQVDR----- 360 (396)
T ss_pred -----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccceEEEecCCCHHHHHH-----
Confidence 2245777889999999999999999999986544577788999999999997644333
Q ss_pred hHHHHHHHHhhcCCCccccccccCCcceeecCCCCC
Q psy14428 547 IREELKSKILDKGSKKNWDHITNQKGMFCYTGLSAS 582 (583)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (583)
+.++.++.+.+ . |+|+|+.++++
T Consensus 361 l~~~~~V~~~p------------~-~ri~~~~~~~~ 383 (396)
T PRK09257 361 LREEFGVYAVG------------S-GRINVAGLNES 383 (396)
T ss_pred HHHcCCEEEcC------------C-CeEEEeeCCHH
Confidence 33333332221 2 58999887765
|
|
| >PTZ00376 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-50 Score=425.46 Aligned_cols=348 Identities=51% Similarity=0.915 Sum_probs=272.7
Q ss_pred hhhHhhccccccCCCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCC
Q psy14428 148 KPLKQQLKGFNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAF 227 (583)
Q Consensus 148 ~~i~~l~~~~~~~~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~ 227 (583)
+++..+.+.+++..+++.++|+.|++++..++..+.+.+.+++.++.......+|+|+.|.++||+++|+|+.+.++..+
T Consensus 14 ~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~ 93 (404)
T PTZ00376 14 DPILGLAAAFKADPSPSKVNLGIGAYRDENGKPYVLESVRKAEKIIAEKNLDKEYLPIEGLQSFIEAAQKLLFGEASYAL 93 (404)
T ss_pred ChHHHHHHHHhhcCCcccEecccceeECCCCCEehhhHHHHHHHHhccccCCCCCCCCCCCHHHHHHHHHHhcCCCcccc
Confidence 34444444443334578899999997433333444567777776655433458899999999999999999987777778
Q ss_pred CCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcC
Q psy14428 228 KDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAM 307 (583)
Q Consensus 228 ~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~ 307 (583)
++++|++.+|+|+++|+.++..++..++.+||+|++++|+|+.|...++..|++++.+|+.+++++++|++.+++.+++.
T Consensus 94 ~~~~v~~~~t~G~~~al~~~~~~l~~~~~~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~l~~~~~~~~d~~~l~~~~~~~ 173 (404)
T PTZ00376 94 AEKRIATVQALSGTGALRLGFEFLKRFLPAGTTVYVSNPTWPNHVNIFKSAGLNVKEYRYYDPKTKGLDFDGMLEDLRTA 173 (404)
T ss_pred ccCeEEEeeccCcchHHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHcCCceeeccccCcccCCcCHHHHHHHHHhC
Confidence 99999954599999999998665667778899999999999999999999999999999944445899999999988654
Q ss_pred CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccc
Q psy14428 308 PERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNM 387 (583)
Q Consensus 308 ~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~ 387 (583)
.++++++++||||||||.++|.+++++|+++|++|+++||+||+|.+|.+++...+..++..+.+..+++|+++||||+|
T Consensus 174 ~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~ 253 (404)
T PTZ00376 174 PNGSVVLLHACAHNPTGVDPTEEQWKEIADVMKRKNLIPFFDMAYQGFASGDLDKDAYAIRLFAERGVEFLVAQSFSKNM 253 (404)
T ss_pred CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEehhhcCccCCCHHHHHHHHHHHHhcCCcEEEEEeCCCcc
Confidence 45678999999999999999999999999999999999999999999998641112334555544456899999999999
Q ss_pred cccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCC
Q psy14428 388 GLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNP 467 (583)
Q Consensus 388 ~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~ 467 (583)
++||+|+||+++...+++..+.+++.+.+..+..+.+++.++|.++..+++++.
T Consensus 254 ~~~GlRvG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~-------------------------- 307 (404)
T PTZ00376 254 GLYGERIGALHIVCANKEEAANVLSQLKLIIRPMYSSPPIHGARIADRILSDPE-------------------------- 307 (404)
T ss_pred cccccccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHhCCHH--------------------------
Confidence 999999999953112321112344555555566677788899999999887642
Q ss_pred ccchhhHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCChh
Q psy14428 468 PIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSAS 537 (583)
Q Consensus 468 p~~g~~i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~~ 537 (583)
+.+.|.++++++++++.++|+.+.+.|++.+.++.|.+..+++|||.|..++.+
T Consensus 308 ----------------~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~p~gg~f~~~~~~~~ 361 (404)
T PTZ00376 308 ----------------LRAEWLSELKEMSGRIQNMRQLLYDELKALGSPGDWEHIINQIGMFSFTGLTKE 361 (404)
T ss_pred ----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccCceEEEecCCCHH
Confidence 224566678888899999999999999998666567777899999999998754
|
|
| >COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-49 Score=418.41 Aligned_cols=303 Identities=15% Similarity=0.172 Sum_probs=263.9
Q ss_pred CCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCC-eEEEecCCch
Q psy14428 163 PKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNR-LAIVQGISGS 241 (583)
Q Consensus 163 ~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~-I~i~~t~G~~ 241 (583)
.++|+|++|+|+.+ +++.+.+++.+.+.++.. +|++.+|.++||++||+++.+++|+.+++++ |++ |+|++
T Consensus 28 ~~vi~l~iG~Pd~~-----~p~~i~~a~~~a~~~~~~-~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~eiiv--t~Ga~ 99 (393)
T COG0436 28 EDVIDLSIGEPDFP-----TPEHIIEAAIEALEEGGT-HYTPSAGIPELREAIAEKYKRRYGLDVDPEEEIIV--TAGAK 99 (393)
T ss_pred CCEEEeCCCCCCCC-----CCHHHHHHHHHHHhcccC-CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEE--eCCHH
Confidence 58999999999743 567888888887766423 7889999999999999999999999999987 999 99999
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccC-CCCCCChhhHHHHHHcCCCCcEEEEeCCCC
Q psy14428 242 GSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDN-KTNGLDFAGMMEDIKAMPERSILFLQTSSH 320 (583)
Q Consensus 242 ~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~-~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~ 320 (583)
+|+.++ +..+.+|||+|++++|.|+.|...+..+|++++.+++..+ +++.+|++.+++++ +++++++++||||
T Consensus 100 ~al~~~---~~a~~~pGDeVlip~P~Y~~y~~~~~~~gg~~v~v~l~~~~~~f~~d~~~l~~~i---~~ktk~i~ln~P~ 173 (393)
T COG0436 100 EALFLA---FLALLNPGDEVLIPDPGYPSYEAAVKLAGGKPVPVPLDEEENGFKPDLEDLEAAI---TPKTKAIILNSPN 173 (393)
T ss_pred HHHHHH---HHHhcCCCCEEEEeCCCCcCHHHHHHhcCCEEEEEeCCcCccCCcCCHHHHHhhc---CccceEEEEeCCC
Confidence 999985 4556777999999999999999999999999999998322 36899999999988 6689999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEE
Q psy14428 321 NPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVL 400 (583)
Q Consensus 321 NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~ 400 (583)
||||.+++++++++|+++|++|+++||.||+|.+|.|++ ..++++.++.+..+++|+++||||+|+|+|||+||+++
T Consensus 174 NPTGav~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~--~~~~s~~~~~~~~~~~i~i~s~SK~~~mtGwRvG~~v~- 250 (393)
T COG0436 174 NPTGAVYSKEELKAIVELAREHDIIIISDEIYEELVYDG--AEHPSILELAGARDRTITINSFSKTYGMTGWRIGWVVG- 250 (393)
T ss_pred CCcCcCCCHHHHHHHHHHHHHcCeEEEEehhhhhcccCC--CCcCCHhhcCCCcceEEEEecccccccccccceeEeec-
Confidence 999999999999999999999999999999999999997 23556666544457999999999999999999999999
Q ss_pred cCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHhcC
Q psy14428 401 TPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEILS 480 (583)
Q Consensus 401 ~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~l~ 480 (583)
++ +++++.+.+++....+|++.++|.++..+|+.+.-
T Consensus 251 -~~----~~l~~~~~~~~~~~~~~~~~~~Q~aa~~aL~~~~~-------------------------------------- 287 (393)
T COG0436 251 -PP----EELIAALRKLKSYLTSCAPTPAQYAAIAALNGPQS-------------------------------------- 287 (393)
T ss_pred -Ch----HHHHHHHHHHHHhcccCCCHHHHHHHHHHhcCccc--------------------------------------
Confidence 64 47999999999999999999999999999987420
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccc-ccccceeecCCCh
Q psy14428 481 DPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHIT-NQKGMFCYTGLSA 536 (583)
Q Consensus 481 ~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~-~~~g~f~~~~l~~ 536 (583)
...++.+++.|.++|+.+.+.|.+.+ +|.+.. |+|+||.|++++.
T Consensus 288 --------~~~~~~~~~~~~~rrd~l~~~l~~~~---g~~~~~~p~Ga~Y~~~~i~~ 333 (393)
T COG0436 288 --------DEVVEEMREEYRERRDLLVEALNEIG---GLSVVKPPEGAFYLFPKIPE 333 (393)
T ss_pred --------hHHHHHHHHHHHHHHHHHHHHHHhcC---CeeeccCCCeeEEEEeecCC
Confidence 11256677889999999999999864 366777 8899999998876
|
|
| >PLN02397 aspartate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-48 Score=413.32 Aligned_cols=348 Identities=50% Similarity=0.883 Sum_probs=270.0
Q ss_pred chhhHhhccccccCCCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCC
Q psy14428 147 IKPLKQQLKGFNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPA 226 (583)
Q Consensus 147 ~~~i~~l~~~~~~~~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~ 226 (583)
.+++..+...++....+..++++.|.+.++.+.|...+.+.++...+...+...+|++..|.++||+++++|+.+.++..
T Consensus 32 ~~~i~~~~~~~~~~~~~~~l~l~~g~~p~~~~~p~~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~~~~ 111 (423)
T PLN02397 32 PDPILGVTEAFLADPSPVKLNLGVGAYRTEEGKPVVLNVVRKAEQRLLAGSRNKEYLPIEGLAEFNKLSAKLAYGADSPA 111 (423)
T ss_pred CChHHHHHHHHhhCCCcceEecccceeeCCCCCcccchHHHHHHHHhhccCCCCCCCCcCCCHHHHHHHHHHHcCCCCch
Confidence 44556655555555677889999997544445444567888887776543445689999999999999999997766555
Q ss_pred CCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHc
Q psy14428 227 FKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKA 306 (583)
Q Consensus 227 ~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~ 306 (583)
.++++|..+++.+++++..++..++..+. |||+|++++|+|+.|...++..|++++.+|+.+++++++|++.+++.+.+
T Consensus 112 ~~~~~i~~~~i~~g~Ga~~l~~~~~~~~~-pGd~Vlv~~P~y~~y~~~~~~~g~~~~~v~l~~~~~~~~d~~~l~~~l~~ 190 (423)
T PLN02397 112 IKENRVATVQCLSGTGSLRLGAEFLARFY-PGSTIYIPNPTWGNHHNIFRDAGVPVRTYRYYDPKTRGLDFDGLLEDLKA 190 (423)
T ss_pred hhcCeeEeeecccchHHHHHHHHHHHHhC-CCCEEEEeCCCchhHHHHHHHcCCeEEEeecccCcCCccCHHHHHHHHHh
Confidence 55566655556677777665544555444 69999999999999999999999999999984344578999999988865
Q ss_pred CCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCccc
Q psy14428 307 MPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKN 386 (583)
Q Consensus 307 ~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~ 386 (583)
..++++++++||||||||.+++.+++++|+++|++|+++||+||+|.+|.+++...+..++..+....++||+++||||+
T Consensus 191 ~~~~~~~i~~~~P~NPTG~v~s~e~l~~i~~~a~~~~~~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vI~~~SfSK~ 270 (423)
T PLN02397 191 APDGSFVLLHACAHNPTGVDPTPEQWEQISDLIKSKNHLPFFDSAYQGFASGDLDADAQSVRMFVEDGHEILVAQSYAKN 270 (423)
T ss_pred CCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEecccCCccCCchhhhhHHHHHHHhcCCcEEEEEECccc
Confidence 55678999999999999999999999999999999999999999999999864111334555554444689999999999
Q ss_pred ccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCC
Q psy14428 387 MGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSN 466 (583)
Q Consensus 387 ~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~ 466 (583)
|+++|||+||+++..++++..+.+++.+.+..+..+.+++.+.|.+++.+++++.
T Consensus 271 ~~~~G~RvG~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~L~~~~------------------------- 325 (423)
T PLN02397 271 MGLYGERVGALSVVCKSADVAVRVKSQLKLIARPMYSNPPIHGASIVATILGDPE------------------------- 325 (423)
T ss_pred CCCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHH-------------------------
Confidence 9999999999963224432222345556666666777888899998888887632
Q ss_pred CccchhhHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCChh
Q psy14428 467 PPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSAS 537 (583)
Q Consensus 467 ~p~~g~~i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~~ 537 (583)
+...|.++++++++++.++|+.+.+.|++++.++.|.+..|++|||.|.+++.+
T Consensus 326 -----------------~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~~~~~~~~~~~p~gg~fl~~~l~~~ 379 (423)
T PLN02397 326 -----------------LFSEWTKELKGMADRIISMRQKLYDALEARGSPGDWSHITKQIGMFSFTGLNKE 379 (423)
T ss_pred -----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccCCceEEEecCCCHH
Confidence 234566778889999999999999999998766678888899999999998743
|
|
| >COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-47 Score=412.47 Aligned_cols=349 Identities=15% Similarity=0.185 Sum_probs=286.1
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhcc--CC-CCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEec
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEK--NL-DHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQG 237 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~--~~-~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t 237 (583)
..+..++|+.|.++++ .++.+.++++..+..+. .. ...|.+..|.++||++|++++...+|+.+++++|+| |
T Consensus 87 ~~~~~i~f~~g~p~~~---~fp~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~~ia~~l~~~~g~~~~~~~Iii--T 161 (459)
T COG1167 87 DDPSVIDFAGGLPDPS---LFPLEALRRALARVLRNYGASLALQYGPTAGLPELREAIAAYLLARRGISCEPEQIVI--T 161 (459)
T ss_pred CCCceecCCCCCCCcc---cCCHHHHHHHHHHHHhhcchhhhhcCCCCCCcHHHHHHHHHHHHHhcCCccCcCeEEE--e
Confidence 4578899999998653 44667888888887754 22 578899999999999999999988999999999999 9
Q ss_pred CCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeC
Q psy14428 238 ISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQT 317 (583)
Q Consensus 238 ~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~ 317 (583)
+|+++|++++ ++.+++|||+|++++|+|.....+++.+|+++++||+ |+ .|+|++.+++.+++. +...+|++|
T Consensus 162 ~G~q~al~l~---~~~l~~pGd~v~vE~PtY~~~~~~~~~~g~~~~~vp~-d~--~G~~~e~le~~~~~~-~~k~~y~~P 234 (459)
T COG1167 162 SGAQQALDLL---LRLLLDPGDTVLVEDPTYPGALQALEALGARVIPVPV-DE--DGIDPEALEEALAQW-KPKAVYVTP 234 (459)
T ss_pred CCHHHHHHHH---HHHhCCCCCEEEEcCCCcHHHHHHHHHcCCcEEecCC-CC--CCCCHHHHHHHHhhc-CCcEEEECC
Confidence 9999999984 5667888999999999999999999999999999999 64 699999999998654 567789999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEE
Q psy14428 318 SSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTF 397 (583)
Q Consensus 318 ~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~l 397 (583)
+.|||||.+||.+++++|+++|++||++|||||+|++|.|++ .+.++++.+ +..++|||++||||+++ ||+|+||+
T Consensus 235 ~~qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~--~p~~~l~~l-d~~~rViy~gSFSK~l~-PglRlG~v 310 (459)
T COG1167 235 TFQNPTGVTMSLERRKALLALAEKYDVLIIEDDYYGELRYDG--PPPPPLKAL-DAPGRVIYLGSFSKTLA-PGLRLGYV 310 (459)
T ss_pred CCCCCCCCccCHHHHHHHHHHHHHcCCeEEeeCcchhhhcCC--CCCCChHhh-CCCCCEEEEeeehhhcc-cccceeee
Confidence 999999999999999999999999999999999999999997 345567775 55789999999999997 99999999
Q ss_pred EEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHH
Q psy14428 398 SVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTE 477 (583)
Q Consensus 398 v~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~ 477 (583)
++ | +++++++...+...+.++|.+.|.+++.++.++.
T Consensus 311 v~--p-----~~~~~~~~~~k~~~~~~~s~~~Q~~la~~l~~G~------------------------------------ 347 (459)
T COG1167 311 VA--P-----PELIEKLLRLKQAADLGPSSLSQAALAAFLLSGH------------------------------------ 347 (459)
T ss_pred eC--C-----HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC------------------------------------
Confidence 99 8 6899999999999999999999999999887543
Q ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCChhhhhhhhhhhhHHHHHHHHhh
Q psy14428 478 ILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSASQGMSNRISSIREELKSKILD 557 (583)
Q Consensus 478 ~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 557 (583)
|.+|++++|..|.++|+.+.++|++.+ |+......|.+|+|.|..+++. +....+...+.+.+..+.+
T Consensus 348 ----------~~~hl~~lR~~y~~rr~~l~~~L~~~~-~~~~~~~~p~gG~flwl~l~~~-~~~~~l~~~a~~~gv~i~~ 415 (459)
T COG1167 348 ----------YDRHLRRLRREYARRRDALLEALAEYL-PELATWTRPEGGLFLWLELPEG-IDARELLAAALEKGVVVTP 415 (459)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCeeeecCCceEEEEEEcCCC-CCHHHHHHHHHHCCCEEEc
Confidence 456688888999999999999999976 3446678899999999988775 1121221212222222222
Q ss_pred cCCCccccccc--cCCcceeecCCCCC
Q psy14428 558 KGSKKNWDHIT--NQKGMFCYTGLSAS 582 (583)
Q Consensus 558 ~~~~~~~~~~~--~~~~~~~~~~~~~~ 582 (583)
.+..|.... ...-++||+..++|
T Consensus 416 --~g~~f~~~~~~~~~~Rl~~s~~~~e 440 (459)
T COG1167 416 --LGSAFSADGDPRNGLRLSFSSPSEE 440 (459)
T ss_pred --CCccccCCCCCCCeEEEEcCCCCHH
Confidence 133333322 22237899988765
|
|
| >KOG1411|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-47 Score=370.35 Aligned_cols=377 Identities=51% Similarity=0.919 Sum_probs=347.5
Q ss_pred cccchhhHhhccccccCCCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCC
Q psy14428 144 MEDIKPLKQQLKGFNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGED 223 (583)
Q Consensus 144 ~~~~~~i~~l~~~~~~~~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~ 223 (583)
|.|++||+-+...++++.++.+|||+.|.+.++.|.|++++.|++|.+++........|.|..|++++.+..+++.....
T Consensus 33 maPpDpILGVTeAfk~D~n~~KiNLgvGaYRdd~gKp~vL~~VrkAE~ql~~~~ldKEYlpI~Gl~eF~k~sakLa~G~~ 112 (427)
T KOG1411|consen 33 MAPPDPILGVTEAFKKDPNPKKINLGVGAYRDDNGKPYVLPSVRKAEQQLASLSLDKEYLPITGLAEFNKLSAKLALGDN 112 (427)
T ss_pred CCCCCCcccHHHHHhcCCCcceeeecccceecCCCCeeeeHHHHHHHHHHhhhcccchhccccchHHHHHHHHHHhhcCC
Confidence 36899999999999999999999999999999999999999999999998887667899999999999999999999888
Q ss_pred CCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHH
Q psy14428 224 FPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMED 303 (583)
Q Consensus 224 g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~ 303 (583)
...+..++|..+||-.|++|+.+.+.++..+.+ +..|.+|+|+|.++..+++.+|+.+..+.+.|+.+.|+|++.+.++
T Consensus 113 s~~ik~~Ri~tvQ~lSGTGaLriga~Fl~~f~~-~~~I~ip~PTWgNh~~if~~ag~~~~~yrYyd~~t~gld~~g~led 191 (427)
T KOG1411|consen 113 SPVIKEKRIVTVQTLSGTGALRVGAEFLARFYP-SRDIYIPDPTWGNHKNIFKDAGLPVKFYRYYDPKTRGLDFKGMLED 191 (427)
T ss_pred chhhhccceeEEEeccCcchhhHHHHHHHhhcc-ccceeecCCcccccCccccccCcceeeeeeccccccccchHHHHHH
Confidence 888889999999999999999999999999988 8999999999999999999999999999998888999999999999
Q ss_pred HHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecC
Q psy14428 304 IKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSF 383 (583)
Q Consensus 304 l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~ 383 (583)
+.+..++..+++-.+.|||||+..+.|+|++|.++.++.+.+.+.|-+|+.|..++...+..+++.|.+...+++.+.||
T Consensus 192 l~~~p~gs~ilLhaCaHNPTGvDPt~eqw~ki~~~~~~k~~~pffDmAYQGfaSG~~d~DA~avR~F~~~g~~~~laQSy 271 (427)
T KOG1411|consen 192 LGEAPEGSIILLHACAHNPTGVDPTKEQWEKISDLIKEKNLLPFFDMAYQGFASGDLDKDAQAVRLFVEDGHEILLAQSY 271 (427)
T ss_pred HhcCCCCcEEEeehhhcCCCCCCccHHHHHHHHHHhhhccccchhhhhhcccccCCchhhHHHHHHHHHcCCceEeehhh
Confidence 99988899999999999999999999999999999999999999999999999998777888999998888999999999
Q ss_pred cccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhc
Q psy14428 384 SKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGF 463 (583)
Q Consensus 384 SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~ 463 (583)
+|++|+.|-|+|.+-++|.+++ ...++.+|++.++|.+
T Consensus 272 AKNMGLYgERvGa~svvc~~ad------------------------------------------~A~rV~SQlk~liRpm 309 (427)
T KOG1411|consen 272 AKNMGLYGERVGALSVVCKDAD------------------------------------------EAKRVESQLKILIRPM 309 (427)
T ss_pred hhhcchhhhccceeEEEecCHH------------------------------------------HHHHHHHHHHHHhccc
Confidence 9999999999999988777643 4456778899999999
Q ss_pred cCCCccchhhHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCChhhhhhhh
Q psy14428 464 YSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSASQGMSNR 543 (583)
Q Consensus 464 ~~~~p~~g~~i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~~~~~~~~ 543 (583)
|++||.+|+.|+..+++|++++.+|..+++.|..|+..+|+.|.+.|+..+.+++|++++.|-|||+|++++++|.+.
T Consensus 310 YSnPP~hGArIv~~Il~d~~l~~~W~~evk~MadRi~~mR~~L~d~L~~~gs~~~W~hI~~QIGMF~fTgl~peQv~~-- 387 (427)
T KOG1411|consen 310 YSNPPLHGARIVATILSDPDLKNQWLGEVKGMADRIISMRQQLFDALEKEGSPGNWSHITKQIGMFCFTGLNPEQVDW-- 387 (427)
T ss_pred ccCCCccchhhhhhccCChHHHHHHHHHHHHHHHhhhhhHHHHhHHhhcCCCCccHHHHHHhhheeeecCCCHHHHHH--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred hhhhHHHHHHHHhhcCCCccccccccCCcceeecCCCC
Q psy14428 544 ISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSA 581 (583)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (583)
+..+..+++. +. |++|.+|++.
T Consensus 388 ---l~ke~~iYmT------------~d-GRiS~aG~ss 409 (427)
T KOG1411|consen 388 ---LTKEYHIYLT------------KD-GRISMAGLSS 409 (427)
T ss_pred ---HHhhheeeec------------cC-ceEeeccccc
Confidence 5566654442 23 5777777664
|
|
| >KOG1412|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-45 Score=350.67 Aligned_cols=364 Identities=43% Similarity=0.775 Sum_probs=329.8
Q ss_pred cchhhHhhccccccCCCCCccccCCccccCCCCCCCCChHHHHHHHHHhcc-CCCCCCCCCCCCHHHHHHHHHHHhCCCC
Q psy14428 146 DIKPLKQQLKGFNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEK-NLDHEYANIGGDAKFCKLAAQLAYGEDF 224 (583)
Q Consensus 146 ~~~~i~~l~~~~~~~~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~-~~~~~Y~~~~G~~~Lr~aia~~~~~~~g 224 (583)
++..++.+...+.++.+|.+++|++|.+..+.|.||..|.++++...+..+ ...+.|.|..|.+.|+.+.++.+.+...
T Consensus 13 ~p~~vf~~~~~y~~d~~p~KvnL~igAYRtd~g~PWvLPvVk~~e~~i~~d~s~NHEYLpi~Gl~~F~~~A~el~lg~~s 92 (410)
T KOG1412|consen 13 PPIEVFKLNASYGEDLDPVKVNLGIGAYRTDDGKPWVLPVVKKAEKKIANDQSLNHEYLPILGLPTFTKAATELLLGADS 92 (410)
T ss_pred ChHHHHhhHHHhcccCCcceeecccceEEcCCCCeeEehhhhhhhhhccCchhccchhccccCchhhhhhhHHHhcCCCc
Confidence 456667777777788899999999999999999999999999998888766 4578899999999999999999999888
Q ss_pred CCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcC-CeEEEEecccCCCCCCChhhHHHH
Q psy14428 225 PAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSR-LNVGAYRYFDNKTNGLDFAGMMED 303 (583)
Q Consensus 225 ~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G-~~~~~v~~~d~~~~g~d~~~l~~~ 303 (583)
..+..+++.-+|+-+|++|+.+.+.++..+++ ..+|.+.+|+|.++..+++.+| .++..++++|.++-.+|++.+..+
T Consensus 93 ~a~kE~Rv~~vQslsGTGAl~~~A~Fl~~~~~-~~~VY~SnPTW~nH~~if~~aGf~tv~~Y~yWd~~~k~~d~e~~Lsd 171 (410)
T KOG1412|consen 93 PAIKEDRVFGVQSLSGTGALRIAADFLATFYN-KNTVYVSNPTWENHHAIFEKAGFTTVATYPYWDAENKCVDLEGFLSD 171 (410)
T ss_pred hhhhhccccceeeccccchhhhhHHHHHHhcc-cceeEecCCchhHHHHHHHHcCCceeeeeeeecCCCceecHHHHHHH
Confidence 89999999999999999999999999999998 6789999999999999999999 567788998888889999999999
Q ss_pred HHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecC
Q psy14428 304 IKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSF 383 (583)
Q Consensus 304 l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~ 383 (583)
|+.+++...+++-.+.|||||...++|+|++|++..++++++.+.|-+|++|..++.+.+...++.+.+....++++.||
T Consensus 172 l~~APe~si~iLhaCAhNPTGmDPT~EQW~qia~vik~k~lf~fFDiAYQGfASGD~~~DawAiR~fV~~g~e~fv~QSF 251 (410)
T KOG1412|consen 172 LESAPEGSIIILHACAHNPTGMDPTREQWKQIADVIKSKNLFPFFDIAYQGFASGDLDADAWAIRYFVEQGFELFVCQSF 251 (410)
T ss_pred HhhCCCCcEEeeeccccCCCCCCCCHHHHHHHHHHHHhcCceeeeehhhcccccCCccccHHHHHHHHhcCCeEEEEhhh
Confidence 99988888888777889999999999999999999999999999999999999999888899999998888889999999
Q ss_pred cccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhc
Q psy14428 384 SKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGF 463 (583)
Q Consensus 384 SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~ 463 (583)
+|+||+.|-|+|-+..+..++. .+..+.+|+..++|..
T Consensus 252 aKNfGlYneRvGnltvv~~n~a------------------------------------------~i~~v~SQl~lviR~~ 289 (410)
T KOG1412|consen 252 AKNFGLYNERVGNLTVVVNNPA------------------------------------------VIAGVKSQLTLVIRSN 289 (410)
T ss_pred hhhcccccccccceEEEecChh------------------------------------------HHHHHHHHHHHHHhhc
Confidence 9999999999998887544421 2334556777788889
Q ss_pred cCCCccchhhHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCChhhhhhhh
Q psy14428 464 YSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSASQGMSNR 543 (583)
Q Consensus 464 ~~~~p~~g~~i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~~~~~~~~ 543 (583)
+++||..|+.|+.++|+.|++.++|.+.++.|..|+.++|..|.+.|..+++||+|+++..|.|||+|.+|++.+++.
T Consensus 290 ~SNPPAyGArIV~kvL~tP~lre~W~~sik~MssRI~~MR~aLrd~L~aL~TPGtWDHI~~QiGMFSyTGLtp~qV~~-- 367 (410)
T KOG1412|consen 290 WSNPPAYGARIVHKVLSTPELREQWIQSIKTMSSRIKKMRTALRDHLVALKTPGTWDHITQQIGMFSYTGLTPAQVDH-- 367 (410)
T ss_pred cCCCcchhhHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHhhccceeecCCCHHHHHH--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred hhhhHHHHHHHHhh
Q psy14428 544 ISSIREELKSKILD 557 (583)
Q Consensus 544 ~~~~~~~~~~~~~~ 557 (583)
+.+..+.++.+
T Consensus 368 ---li~~h~vyLl~ 378 (410)
T KOG1412|consen 368 ---LIENHKVYLLS 378 (410)
T ss_pred ---HHHhceEEEec
Confidence 56677666654
|
|
| >KOG0257|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-45 Score=369.06 Aligned_cols=302 Identities=15% Similarity=0.121 Sum_probs=263.9
Q ss_pred cCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCC-CeEEEecCCchhHHHH
Q psy14428 168 LGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDN-RLAIVQGISGSGSLRV 246 (583)
Q Consensus 168 l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~-~I~i~~t~G~~~al~l 246 (583)
|+.|.++.+ +|+.+.+++.++..+....+|++..|.++||+++++.++..+|..+.++ +|+| |+|+++++.-
T Consensus 36 LgqGfp~~~-----~P~fv~ea~~~~~~~~~~~qYt~~~G~p~L~~aL~k~~se~~~~~~~~~~eVlV--T~GA~~ai~~ 108 (420)
T KOG0257|consen 36 LGQGFPDFP-----PPKFVTEAAKNAAKEPSTNQYTRGYGLPQLRKALAKAYSEFYGGLLDPDDEVLV--TAGANEAISS 108 (420)
T ss_pred ccCCCCCCC-----CcHHHHHHHHHHhccchhccccccCCchHHHHHHHHHHHHHhccccCCcccEEE--ecCchHHHHH
Confidence 999999744 6789999999998876688999999999999999999999777666655 6999 9999999986
Q ss_pred HHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecc------cCCCCCCChhhHHHHHHcCCCCcEEEEeCCCC
Q psy14428 247 GTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYF------DNKTNGLDFAGMMEDIKAMPERSILFLQTSSH 320 (583)
Q Consensus 247 ~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~------d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~ 320 (583)
. +..++++||+|++.+|.|..|...++++|.+++.+++. ..+++.+|++.++.++ +++++++++||||
T Consensus 109 ~---~~~l~~~GDeVii~eP~fd~Y~~~~~maG~tpv~v~~~~~~g~~~s~~~~~D~~~le~~~---t~kTk~Ii~ntPh 182 (420)
T KOG0257|consen 109 A---LLGLLNPGDEVIVFEPFFDCYIPQVVMAGGTPVFVPLKPKEGNVSSSDWTLDPEELESKI---TEKTKAIILNTPH 182 (420)
T ss_pred H---HHHHcCCCCEEEEecCcchhhhhHHhhcCCcceeeccccccccccCccccCChHHHHhhc---cCCccEEEEeCCC
Confidence 4 45577779999999999999999999999999999984 2456889999999988 8899999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEE
Q psy14428 321 NPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVL 400 (583)
Q Consensus 321 NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~ 400 (583)
||||.++|++++++|+++|++||++||.||+|..+.|++ ..+..+.++++..+++|.++||||+||++|||+||+++
T Consensus 183 NPtGkvfsReeLe~ia~l~~k~~~lvisDevYe~~v~d~--~~h~r~aslPgm~ertitvgS~gKtf~~TGWrlGW~ig- 259 (420)
T KOG0257|consen 183 NPTGKVFSREELERIAELCKKHGLLVISDEVYEWLVYDG--NKHIRIASLPGMYERTITVGSFGKTFGVTGWRLGWAIG- 259 (420)
T ss_pred CCcCcccCHHHHHHHHHHHHHCCEEEEEhhHhHHHhhCC--CcceeeecCCchhheEEEeccccceeeeeeeeeeeeec-
Confidence 999999999999999999999999999999999999998 34677777788889999999999999999999999999
Q ss_pred cCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHhcC
Q psy14428 401 TPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEILS 480 (583)
Q Consensus 401 ~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~l~ 480 (583)
| +.++..+..++++..+.+++..|.+.+..+..++. +...+|.
T Consensus 260 -p-----~~L~~~~~~vh~~~~~~~~Tp~q~A~a~a~~~~~~-----------------------~~~p~~~-------- 302 (420)
T KOG0257|consen 260 -P-----KHLYSALFPVHQNFVFTCPTPIQEASAAAFALELA-----------------------CLQPGGS-------- 302 (420)
T ss_pred -h-----HHhhhhHHHHhhccccccCcHHHHHHHHHHhhhhh-----------------------ccCCcch--------
Confidence 7 68999999999999999999999999998876421 0001111
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCC
Q psy14428 481 DPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLS 535 (583)
Q Consensus 481 ~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~ 535 (583)
.| +.++.+.|+++|+.|.+.|.+++ +....|++++|+|++++
T Consensus 303 ------y~---~~~~~~~y~~krdil~k~L~~lg----~~v~~p~gayyl~adfs 344 (420)
T KOG0257|consen 303 ------YF---ITELVKEYKEKRDILAKALEELG----LKVTGPEGAYYLWADFS 344 (420)
T ss_pred ------hH---HHHHHHHHHHHHHHHHHHHHhcC----CccccCCCceEEEEecc
Confidence 12 45577888999999999999986 56888999999999887
|
|
| >PLN02368 alanine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-44 Score=379.90 Aligned_cols=328 Identities=16% Similarity=0.134 Sum_probs=257.1
Q ss_pred CCCCccccCCccccCC------C--------------CCC-----CCChHHHHHHHHHhcc-CCCCCCCCCCCCHHHHHH
Q psy14428 161 PHPKKMNLGVGAYRGE------D--------------GKP-----YVLPSVKEAERRIYEK-NLDHEYANIGGDAKFCKL 214 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~------~--------------~~p-----~~~~~v~~a~~~~~~~-~~~~~Y~~~~G~~~Lr~a 214 (583)
...++|+|++|+|+.. + +.| ++++.+.++...+... ....+|++..|.++||++
T Consensus 36 ~g~~vi~l~iG~Pd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~~~i~~a~~~l~~~~~~~~~Y~~~~G~~~LR~a 115 (407)
T PLN02368 36 EGKKIIFTNVGNPHALGQKPLTFPRQVVALCQAPFLLDDPNVGLLFPADAIARAKHYLSLTSGGLGAYSDSRGLPGVRKE 115 (407)
T ss_pred HhhhhhcccCCChhHcCCCCchHHHHHHHHhcCchhcCCccccccCCHHHHHHHHHHHhcCCCCCCCCCCCCCCHHHHHH
Confidence 4568899999999621 1 111 2556777776664322 235789999999999999
Q ss_pred HHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhC-CCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCC
Q psy14428 215 AAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFY-PGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTN 293 (583)
Q Consensus 215 ia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~-~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~ 293 (583)
||+|+.+++|+.+++++|++ |+|+++++.++ +..++ ++||+|++++|+|+.|...++..|++++.+++..++++
T Consensus 116 ia~~~~~~~g~~~~~~~I~i--t~Ga~~al~~~---~~~l~~~pGd~Vli~~P~Y~~y~~~~~~~g~~~v~v~~~~~~~~ 190 (407)
T PLN02368 116 VAEFIERRDGYPSDPELIFL--TDGASKGVMQI---LNAVIRGEKDGVLVPVPQYPLYSATISLLGGTLVPYYLEESENW 190 (407)
T ss_pred HHHHHHHhcCCCCChhhEEE--cccHHHHHHHH---HHHHcCCCCCEEEEeCCCCccHHHHHHHcCCEEEEEecccccCC
Confidence 99999988899999999999 99999999985 34444 67999999999999999999999999999999333458
Q ss_pred CCChhhHHHHHHcC---CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHH
Q psy14428 294 GLDFAGMMEDIKAM---PERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYF 370 (583)
Q Consensus 294 g~d~~~l~~~l~~~---~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~ 370 (583)
++|++.+++.+... ..++++++++|||||||.+++.+++++|+++|++|+++||+||+|.++.|++. .++.++.++
T Consensus 191 ~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~~a~~~~~~II~DE~Y~~l~y~~~-~~~~s~~~~ 269 (407)
T PLN02368 191 GLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILKFCYQERLVLLGDEVYQQNIYQDE-RPFISAKKV 269 (407)
T ss_pred CCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccccccccCCC-CCcccHHHH
Confidence 99999999988532 12688999999999999999999999999999999999999999999999752 123344443
Q ss_pred HH-------hcCcEEEEecCcccc-cccCccceEEEEE-cCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChh
Q psy14428 371 AK-------EVGQLCLAQSFSKNM-GLYGERVGTFSVL-TPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPK 441 (583)
Q Consensus 371 ~~-------~~~~vi~i~S~SK~~-~l~GlRiG~lv~~-~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~ 441 (583)
.. ..++||+++||||+| +|||||+||+++. .| +++++++.+... ...+++.++|.++..+++++.
T Consensus 270 ~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~~~~~-----~~li~~~~~~~~-~~~~~~~~~Q~aa~~~l~~~~ 343 (407)
T PLN02368 270 LMDMGPPISKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIP-----PKTVEEIYKVAS-IALSPNVSGQIFMGLMVNPPK 343 (407)
T ss_pred HhhhcccccccceEEEEecCCcccccCCccceEEEEEeCCC-----HHHHHHHHHHhc-ccCCCCcHHHHHHHHHhCCCC
Confidence 21 235899999999999 8999999999941 04 579999998753 456799999999999987531
Q ss_pred hhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc
Q psy14428 442 LKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDH 521 (583)
Q Consensus 442 ~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~ 521 (583)
.. ......|.++++++++.|+++|+.+.+.|++. || +.+
T Consensus 344 ~~--------------------------------------~~~~~~~~~~~~~~~~~~~~rr~~~~~~L~~~--~g-~~~ 382 (407)
T PLN02368 344 PG--------------------------------------DISYDQFVRESKGILESLRRRARMMTDGFNSC--KN-VVC 382 (407)
T ss_pred CC--------------------------------------CccHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CC-eEe
Confidence 00 00012345566778889999999999999986 32 667
Q ss_pred ccccccceeec--CCChhhhhh
Q psy14428 522 ITNQKGMFCYT--GLSASQGMS 541 (583)
Q Consensus 522 ~~~~~g~f~~~--~l~~~~~~~ 541 (583)
..|+||||.|+ .++..-++.
T Consensus 383 ~~P~Gafy~~~~i~lp~~~~~~ 404 (407)
T PLN02368 383 NFTEGAMYSFPQIKLPPKAIEA 404 (407)
T ss_pred CCCCeeeEeccCCCCCHHHHHH
Confidence 88999999996 555555543
|
|
| >PRK06855 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-44 Score=383.01 Aligned_cols=311 Identities=14% Similarity=0.099 Sum_probs=246.6
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
++.+.++++.|+|+.. + ..+++.+.+++.+...+...++|++..|.++||+++|+|+.+++|+.+++++|++ |+|+
T Consensus 30 ~g~~~~~~~~G~p~~~-~-~~~p~~~~~a~~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~I~i--t~G~ 105 (433)
T PRK06855 30 LGVKITWENIGDPIAK-G-EKIPDWMKEIVAELVMDDKSYGYCPTKGVLETREFLAELNNKRGGAQITPDDIIF--FNGL 105 (433)
T ss_pred ccccccccccCCCccc-C-CCCCHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHhccCCCCCHhHEEE--cCcH
Confidence 3457899999998431 1 1256788888887765544678999999999999999999998999999999999 9999
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHH-hhcCCeEEEEecccC-CCCCCChhhHHHHHHcCCCCcEEEEeCC
Q psy14428 241 SGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFC-TDSRLNVGAYRYFDN-KTNGLDFAGMMEDIKAMPERSILFLQTS 318 (583)
Q Consensus 241 ~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~-~~~G~~~~~v~~~d~-~~~g~d~~~l~~~l~~~~~~~~~i~i~~ 318 (583)
++++.++ +. ++.+||.|++++|+|+.|.... ...|++++.+|+ ++ +++++|++.+++.+.. .++++++++||
T Consensus 106 ~~al~~~---~~-l~~~Gd~Vlv~~P~Y~~~~~~~~~~~g~~~v~v~~-~~~~~~~~d~~~l~~~~~~-~~~~~~i~l~~ 179 (433)
T PRK06855 106 GDAIAKI---YG-LLRREARVIGPSPAYSTHSSAEAAHAGYPPVTYRL-DPENNWYPDLDDLENKVKY-NPSIAGILLIN 179 (433)
T ss_pred HHHHHHH---HH-hcCCCCeEEEeCCCCchHHHHHHHhcCCeEEEEec-ccccCCCCCHHHHHHHHhc-CCCceEEEEEC
Confidence 9999885 33 4567999999999999987553 456899999998 53 4578999999988842 24578889999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEE
Q psy14428 319 SHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFS 398 (583)
Q Consensus 319 p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv 398 (583)
||||||.++|.+++++|+++|+++|++||+||+|.+|.|++ .+++++.++.. ..++|+++||||+|++||+|+||++
T Consensus 180 P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~--~~~~sl~~~~~-~~~~I~~~S~SK~~~~pGlRiG~ii 256 (433)
T PRK06855 180 PDNPTGAVYPKEILREIVDIAREYDLFIICDEIYNNIVYNG--KKTVPLSEVIG-DVPGIALKGISKELPWPGSRCGWIE 256 (433)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCC--CCCCCHHHHcC-cCCeEEEecCccccCCCcceEEEEE
Confidence 99999999999999999999999999999999999999875 23456666532 2478999999999999999999999
Q ss_pred EEcCCc---hhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHH
Q psy14428 399 VLTPTS---DETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIV 475 (583)
Q Consensus 399 ~~~p~~---~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~ 475 (583)
+ |++ .....+++.+...+. ...+++.+.|.++.++++++.+
T Consensus 257 ~--p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Q~a~~~~l~~~~~--------------------------------- 300 (433)
T PRK06855 257 V--YNADKDEVFKKYINSILNAKM-IEVCSTTLPQMAIPRIMSHPEY--------------------------------- 300 (433)
T ss_pred E--eCCchhhHHHHHHHHHHHhhc-cccCCChHHHHHHHHhhcCCcH---------------------------------
Confidence 8 531 111234444444433 3456889999999999876432
Q ss_pred HHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCCh
Q psy14428 476 TEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSA 536 (583)
Q Consensus 476 ~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~ 536 (583)
.++++++++.|.++|+.+.+.|++. +| +.+..|++|+|+|..+++
T Consensus 301 -------------~~~~~~~~~~~~~r~~~~~~~L~~~--~~-~~~~~p~gg~~~w~~l~~ 345 (433)
T PRK06855 301 -------------KNYLKERNKRYEKRSNIAYEKLKDV--PG-LKVNRTNGAFYMTVVFED 345 (433)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHhcC--CC-eeccCCCeeEEEeecccc
Confidence 2346667778889999999999764 44 667789999999998875
|
|
| >PLN00175 aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=378.39 Aligned_cols=297 Identities=13% Similarity=0.133 Sum_probs=254.4
Q ss_pred CCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCC-CeEEEecCCc
Q psy14428 162 HPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDN-RLAIVQGISG 240 (583)
Q Consensus 162 ~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~-~I~i~~t~G~ 240 (583)
.++.|+|+.|.|+.+ +++.+.+++.+.+.+. ..+|++..|.++||+++++++++++|+.++++ +|++ |+|+
T Consensus 53 ~~~~i~l~~G~P~~~-----~~~~~~~~~~~~~~~~-~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~v--t~G~ 124 (413)
T PLN00175 53 KHGAINLGQGFPNFD-----GPDFVKEAAIQAIRDG-KNQYARGFGVPELNSAIAERFKKDTGLVVDPEKEVTV--TSGC 124 (413)
T ss_pred cCCeEecCCCCCCCC-----CCHHHHHHHHHHHhcC-CCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEE--eCCH
Confidence 357899999999632 4578888888777653 57899999999999999999998889999998 7999 9999
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCC
Q psy14428 241 SGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSH 320 (583)
Q Consensus 241 ~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~ 320 (583)
++++.++ +..++.+||+|++++|+|+.|...++..|++++.+++ +++++++|++.+++.+ .+++++++++|||
T Consensus 125 ~~al~~~---~~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~-~~~~~~~~~~~l~~~~---~~~~k~i~i~~p~ 197 (413)
T PLN00175 125 TEAIAAT---ILGLINPGDEVILFAPFYDSYEATLSMAGAKIKTVTL-RPPDFAVPEDELKAAF---TSKTRAILINTPH 197 (413)
T ss_pred HHHHHHH---HHHhCCCCCEEEEeCCCchhHHHHHHHcCCEEEEEEC-CcccCCCCHHHHHHhc---CcCceEEEecCCC
Confidence 9999885 4455677999999999999999999999999999999 5555789999998877 4578899999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEE
Q psy14428 321 NPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVL 400 (583)
Q Consensus 321 NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~ 400 (583)
||||.++|.+++++|+++|++++++||+||+|.++.+++ .+.++.++....+++|+++||||+|++||+|+||+++
T Consensus 198 NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~---~~~s~~~~~~~~~~vi~i~SfSK~~~~~G~RiG~~v~- 273 (413)
T PLN00175 198 NPTGKMFTREELELIASLCKENDVLAFTDEVYDKLAFEG---DHISMASLPGMYERTVTMNSLGKTFSLTGWKIGWAIA- 273 (413)
T ss_pred CCCCcCCCHHHHHHHHHHHHHcCcEEEEecccCccccCC---cccChhhCCCCcCcEEEEecchhhccCcchheeeeEe-
Confidence 999999999999999999999999999999999999865 2335555544457999999999999999999999999
Q ss_pred cCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHhcC
Q psy14428 401 TPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEILS 480 (583)
Q Consensus 401 ~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~l~ 480 (583)
| +++++.+.+.+.....++|.+.|.+++.+++++.
T Consensus 274 -~-----~~l~~~l~~~~~~~~~~~s~~~Q~a~~~~l~~~~--------------------------------------- 308 (413)
T PLN00175 274 -P-----PHLTWGVRQAHSFLTFATATPMQWAAVAALRAPE--------------------------------------- 308 (413)
T ss_pred -C-----HHHHHHHHHHHhhccCCCCHHHHHHHHHHHhCCH---------------------------------------
Confidence 7 5899999998888888999999999999986521
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCC
Q psy14428 481 DPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLS 535 (583)
Q Consensus 481 ~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~ 535 (583)
.+++++++.|.++|+.+.+.|++.+ +.+..+++|+|.|.+++
T Consensus 309 ---------~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~p~g~~f~~~~~~ 350 (413)
T PLN00175 309 ---------SYYEELKRDYSAKKDILVEGLKEVG----FKVYPSSGTYFVMVDHT 350 (413)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHCC----CeecCCCeeEEEEEecc
Confidence 1255667778889999999998864 45667899999998874
|
|
| >PRK07366 succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=376.58 Aligned_cols=301 Identities=14% Similarity=0.072 Sum_probs=242.4
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCC-CeEEEecCC
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDN-RLAIVQGIS 239 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~-~I~i~~t~G 239 (583)
.+.+.++|+.|+++.. +++.+.+++.+........+|++..|.++||++||+|+.+.+|+.++++ +|++ |+|
T Consensus 28 ~~~~~i~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~i--t~G 100 (388)
T PRK07366 28 AGKELIDLSLGSSDLP-----APAHALEAIAQSLHDPSTHGYLLFHGTLDFREAAAQWYEQRFGLAVDPETEVLP--LIG 100 (388)
T ss_pred cCCCeEEeCCCCCCCC-----CCHHHHHHHHHHHhCcccCCCCCCCCCHHHHHHHHHHHHHhhCCcCCCcCeEEE--CCC
Confidence 4567899999998522 4577888887766544457899999999999999999998889999998 6999 999
Q ss_pred chhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCC-CCCCChhhHHHHHHcCCCCcEEEEeCC
Q psy14428 240 GSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNK-TNGLDFAGMMEDIKAMPERSILFLQTS 318 (583)
Q Consensus 240 ~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~-~~g~d~~~l~~~l~~~~~~~~~i~i~~ 318 (583)
+++++.++ +..++++||+|++++|+|+.|...++..|++++.+|+ +++ .+.+|++.+++.+ .++++++++||
T Consensus 101 s~~al~~~---~~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~-~~~~~~~~d~~~l~~~~---~~~~k~i~l~~ 173 (388)
T PRK07366 101 SQEGTAHL---PLAVLNPGDFALLLDPGYPSHAGGVYLAGGQIYPMPL-RAENDFLPVFADIPTEV---LAQARLMVLSY 173 (388)
T ss_pred cHHHHHHH---HHHhCCCCCEEEEcCCCCcchHHHHHhcCCEEEEEEC-CCccCCCCCHHHHHHhh---cccceEEEEeC
Confidence 99999985 4557778999999999999999999999999999999 543 3567777777665 45678999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEE
Q psy14428 319 SHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFS 398 (583)
Q Consensus 319 p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv 398 (583)
||||||.++|.+++++|+++|++++++||+||+|.+|.+++. ...+++.++....+++|+++||||+||+||+|+||++
T Consensus 174 p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~-~~~~~~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v 252 (388)
T PRK07366 174 PHNPTTAIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGE-VEPPSILQADPEKSVSIEFFTLSKSYNMGGFRIGFAI 252 (388)
T ss_pred CCCCCCccCCHHHHHHHHHHHHHcCeEEEEecchhhcccCCC-CCCCChhhCCCCcccEEEEeecccccCCcchhheehc
Confidence 999999999999999999999999999999999999998752 1134555543334579999999999999999999999
Q ss_pred EEcCCchhHHHHHHHHHHHHhccccCCChHH-HHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHH
Q psy14428 399 VLTPTSDETERIMSQLKILIRGFYSNPPIHG-ARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTE 477 (583)
Q Consensus 399 ~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~-q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~ 477 (583)
+ + +++++++.+.+.....+.++.. |.+++.+.++
T Consensus 253 ~--~-----~~li~~l~~~~~~~~~~~~~~~~~~a~~~l~~~-------------------------------------- 287 (388)
T PRK07366 253 G--N-----AQLIQALRQVKAVVDFNQYRGILNGAIAALTGP-------------------------------------- 287 (388)
T ss_pred C--C-----HHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCc--------------------------------------
Confidence 8 7 5899999988776655554433 3333332221
Q ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCCh
Q psy14428 478 ILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSA 536 (583)
Q Consensus 478 ~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~ 536 (583)
.++++++++.+.++|+.+.+.|++.+ +.+..|++|+|.|..++.
T Consensus 288 -----------~~~l~~~~~~~~~~r~~l~~~L~~~~----~~~~~p~~g~f~~~~~~~ 331 (388)
T PRK07366 288 -----------QATVQQTVQIFRQRRDAFINALHQIG----WPVPLPEATMYVWAKLPE 331 (388)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHCC----CcccCCCeeEEEEEECCc
Confidence 12366777888899999999998763 555678999999998864
|
|
| >PRK08636 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-43 Score=376.41 Aligned_cols=304 Identities=14% Similarity=0.140 Sum_probs=244.4
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCC-CeEEEecCC
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDN-RLAIVQGIS 239 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~-~I~i~~t~G 239 (583)
.+++.++|+.|.|+.+ +++.+.+++.+........+|++..|.++||+++|+|+.+.+|+.++++ +|++ |+|
T Consensus 31 ~~~~~~~l~~g~p~~~-----~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~~ia~~l~~~~~~~~~~~~~I~i--t~G 103 (403)
T PRK08636 31 AGEDIIDFSMGNPDGP-----TPQHIIDKLCESAQKPKTHGYSVSKGIYKLRLAICNWYKRKYNVDLDPETEVVA--TMG 103 (403)
T ss_pred cCCCEEEcCCcCCCCC-----CCHHHHHHHHHHhcCCccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEE--CCC
Confidence 3467899999988632 2344444444433333367899999999999999999998889999998 7999 999
Q ss_pred chhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccC-CCCCCChhhH----HHHHHcCCCCcEEE
Q psy14428 240 GSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDN-KTNGLDFAGM----MEDIKAMPERSILF 314 (583)
Q Consensus 240 ~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~-~~~g~d~~~l----~~~l~~~~~~~~~i 314 (583)
+++++.++ +..++++||+|++++|+|+.+...++..|++++++|+ +. +++++|++.+ ++.+++...+++++
T Consensus 104 ~~~al~~~---~~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~-~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~i 179 (403)
T PRK08636 104 SKEGYVHL---VQAITNPGDVAIVPDPAYPIHSQAFILAGGNVHKMPL-EYNEDFELDEDQFFENLEKALRESSPKPKYV 179 (403)
T ss_pred hHHHHHHH---HHHhCCCCCEEEEcCCCCcchHHHHHhcCCEEEEEec-cccccCccChhhhhhHHHHHHhhccCCceEE
Confidence 99999985 5567788999999999999999999999999999998 43 3478998765 44443334678999
Q ss_pred EeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccc
Q psy14428 315 LQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERV 394 (583)
Q Consensus 315 ~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRi 394 (583)
+++|||||||.++|.+++++|+++|++|+++||+||+|.+|.+++ ...+++.++....+++|+++||||+||+||+|+
T Consensus 180 ~~~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~--~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRi 257 (403)
T PRK08636 180 VVNFPHNPTTATVEKSFYERLVALAKKERFYIISDIAYADITFDG--YKTPSILEVEGAKDVAVESYTLSKSYNMAGWRV 257 (403)
T ss_pred EEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccchhhccCC--CCCCChhcCCCccccEEEEEecccccCCcccee
Confidence 999999999999999999999999999999999999999999875 234455554333467899999999999999999
Q ss_pred eEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhH
Q psy14428 395 GTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARI 474 (583)
Q Consensus 395 G~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i 474 (583)
||+++ | +++++++.+.+.....+++.+.|.++..++++.
T Consensus 258 G~iv~--~-----~~li~~~~~~~~~~~~~~~~~~q~~~~~~~~~~---------------------------------- 296 (403)
T PRK08636 258 GFVVG--N-----KKLVGALKKIKSWLDYGMFTPIQVAATIALDGD---------------------------------- 296 (403)
T ss_pred eeeeC--C-----HHHHHHHHHHHHHhcccCChHHHHHHHHHHhCc----------------------------------
Confidence 99998 7 589999998877666777888888776555321
Q ss_pred HHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCCh
Q psy14428 475 VTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSA 536 (583)
Q Consensus 475 ~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~ 536 (583)
.++++++++.+.++|+.+.+.|++.+ +.+..+++|+|.|..++.
T Consensus 297 --------------~~~~~~~~~~~~~~~~~l~~~L~~~~----~~~~~p~~g~~~~~~l~~ 340 (403)
T PRK08636 297 --------------QSCVEEIRETYRKRRDVLIESFANAG----WELQKPRASMFVWAKIPE 340 (403)
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHHCC----CcccCCCcceEEEEECCC
Confidence 12356677778889999999998853 556788999999998864
|
|
| >PRK07681 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-43 Score=374.63 Aligned_cols=300 Identities=14% Similarity=0.139 Sum_probs=248.6
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCC-CCeEEEecCC
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKD-NRLAIVQGIS 239 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~-~~I~i~~t~G 239 (583)
..++.++|+.|.++.. +++.+.+++.+........+|+ ..|.++||++||+|+.+++|+.+++ ++|++ |+|
T Consensus 30 ~~~~~i~l~~g~p~~~-----~~~~~~~~~~~~~~~~~~~~y~-~~G~~~lr~aia~~~~~~~g~~~~~~~~I~i--t~G 101 (399)
T PRK07681 30 AGHKMIDLSIGNPDMP-----PADFVREEMVHTANQKESYGYT-LSGIQEFHEAVTEYYNNTHNVILNADKEVLL--LMG 101 (399)
T ss_pred cCCCeEEeCCCCCCCC-----CCHHHHHHHHHHHhccccCCCC-CCCcHHHHHHHHHHHHHHhCCCCCCCCeEEE--CCC
Confidence 3567899999988522 4577888888776543344565 5899999999999999889999998 89999 999
Q ss_pred chhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCC-CCCCChhhHHHHHHcCCCCcEEEEeCC
Q psy14428 240 GSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNK-TNGLDFAGMMEDIKAMPERSILFLQTS 318 (583)
Q Consensus 240 ~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~-~~g~d~~~l~~~l~~~~~~~~~i~i~~ 318 (583)
+++++.++ +..++.+||+|++++|+|+.|...++..|++++.+|+ +++ ++.+|++.+++.+ .+++++++++|
T Consensus 102 ~~~al~~~---~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~-~~~~~~~~d~~~l~~~~---~~~~k~v~l~~ 174 (399)
T PRK07681 102 SQDGLVHL---PMVYANPGDIILVPDPGYTAYETGIQMAGATSYYMPL-KKENDFLPDLELIPEEI---ADKAKMMILNF 174 (399)
T ss_pred cHHHHHHH---HHHhCCCCCEEEECCCCccchHHHHHhcCCEEEEEec-CCCCCCcCCHHHHHHhc---cccceEEEEeC
Confidence 99999985 4456778999999999999999999999999999999 543 4667899888776 45788999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEE
Q psy14428 319 SHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFS 398 (583)
Q Consensus 319 p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv 398 (583)
||||||.+++.+++++|+++|++++++||+||+|.+|.+++ ....++.++....+++|+++||||+||+||+|+||++
T Consensus 175 P~NPTG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~--~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~i 252 (399)
T PRK07681 175 PGNPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDG--NKPISFLSVPGAKEVGVEINSLSKSYSLAGSRIGYMI 252 (399)
T ss_pred CCCCcCcCCCHHHHHHHHHHHHHcCeEEEEeccchhheeCC--CCCCChhhCCCCcccEEEEeecccccCCccceeEEEe
Confidence 99999999999999999999999999999999999999875 2334555543344689999999999999999999999
Q ss_pred EEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHh
Q psy14428 399 VLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEI 478 (583)
Q Consensus 399 ~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~ 478 (583)
+ | +++++++.+.+.....+++.+.|.++..+++++.
T Consensus 253 ~--~-----~~l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~------------------------------------- 288 (399)
T PRK07681 253 G--N-----EEIVRALTQFKSNTDYGVFLPIQKAACAALRNGA------------------------------------- 288 (399)
T ss_pred c--C-----HHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCcH-------------------------------------
Confidence 8 7 5899999988877778899999999999887631
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCCh
Q psy14428 479 LSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSA 536 (583)
Q Consensus 479 l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~ 536 (583)
++++++++.+.++|+.+.+.|++.+ +.+..+++|+|.|..++.
T Consensus 289 -----------~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~p~~g~f~~~~l~~ 331 (399)
T PRK07681 289 -----------AFCEKNRGIYQERRDTLVDGFRTFG----WNVDKPAGSMFVWAEIPK 331 (399)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHCC----CcccCCCeeeEEEEECCC
Confidence 1234455666788888888888753 556678999999998864
|
|
| >PRK06348 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-43 Score=373.97 Aligned_cols=300 Identities=16% Similarity=0.178 Sum_probs=245.1
Q ss_pred CCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCch
Q psy14428 162 HPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGS 241 (583)
Q Consensus 162 ~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~ 241 (583)
.++.++|+.|.++.. +++.+.++..+.... ....|+++.|.++||+++|+|+.+++|+.+++++|++ |+|++
T Consensus 28 ~~~~i~l~~g~p~~~-----~~~~~~~~~~~~~~~-~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~i~i--t~G~~ 99 (384)
T PRK06348 28 FPDIIDLSLGDPDLI-----TDESIINAAFEDAKK-GHTRYTDSGGDVELIEEIIKYYSKNYDLSFKRNEIMA--TVGAC 99 (384)
T ss_pred cCCcEEcCCCCCCCC-----CCHHHHHHHHHHHhc-CCCCCCCCCCcHHHHHHHHHHHHHHhCCCCChhhEEE--cCChH
Confidence 356799999988532 335555543333322 2578999999999999999999988899999999999 99999
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCC
Q psy14428 242 GSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHN 321 (583)
Q Consensus 242 ~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~N 321 (583)
+++.++ +..++++||+|++++|+|..|...++..|++++.+|+.+++++++|++.+++.+ .+++++++++||||
T Consensus 100 ~al~~~---~~~~~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~---~~~~~~v~l~~p~N 173 (384)
T PRK06348 100 HGMYLA---LQSILDPGDEVIIHEPYFTPYKDQIEMVGGKPIILETYEEDGFQINVKKLEALI---TSKTKAIILNSPNN 173 (384)
T ss_pred HHHHHH---HHHhcCCCCEEEEeCCCCcchHHHHHHcCCEEEEecCCcCcCCcCCHHHHHHhh---CcCccEEEEeCCCC
Confidence 999985 445667799999999999999999999999999999843445679999998877 45678888899999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEc
Q psy14428 322 PTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLT 401 (583)
Q Consensus 322 PTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~ 401 (583)
|||.++|.+++++|+++|++++++||+||+|.+|.+++ ...++.++....+++|+++||||++|+||+|+||+++
T Consensus 174 PtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~---~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~v~-- 248 (384)
T PRK06348 174 PTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYE---DFVPMATLAGMPERTITFGSFSKDFAMTGWRIGYVIA-- 248 (384)
T ss_pred CCCcCCCHHHHHHHHHHHHHCCeEEEEecccccceeCC---CccchhhcCCCcCcEEEEecchhccCCccccceeeec--
Confidence 99999999999999999999999999999999999864 2334555433357999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHhcCC
Q psy14428 402 PTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEILSD 481 (583)
Q Consensus 402 p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~l~~ 481 (583)
| +++++.+.+.+.....++|.+.|.++..++.+.
T Consensus 249 ~-----~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~----------------------------------------- 282 (384)
T PRK06348 249 P-----DYIIETAKIINEGICFSAPTISQRAAIYALKHR----------------------------------------- 282 (384)
T ss_pred C-----HHHHHHHHHHHHhccCCCCHHHHHHHHHHHhCc-----------------------------------------
Confidence 7 589999998888777789999999998887541
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCCh
Q psy14428 482 PKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSA 536 (583)
Q Consensus 482 ~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~ 536 (583)
.++++++++.++++++.+.+.|+.. +| +.+..+++|+|.|..++.
T Consensus 283 -------~~~~~~~~~~~~~r~~~~~~~L~~~--~~-~~~~~p~gg~~~~~~~~~ 327 (384)
T PRK06348 283 -------DTIVPLIKEEFQKRLEYAYKRIESI--PN-LSLHPPKGSIYAFINIKK 327 (384)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHhcC--CC-ceeccCCeeEEEEEeccc
Confidence 1124456666778888888888764 33 556778999999987753
|
|
| >PLN00143 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=369.64 Aligned_cols=316 Identities=13% Similarity=0.120 Sum_probs=244.9
Q ss_pred hhHhhccccccCCCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCC
Q psy14428 149 PLKQQLKGFNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFK 228 (583)
Q Consensus 149 ~i~~l~~~~~~~~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~ 228 (583)
++..+...+..+.++++|+|+.|+|+.. +...+++.+.+++.+........+|+|..|.++||++||+|+.+++|+.++
T Consensus 18 ~~~~~~~~~~~~~~~~~i~l~~G~p~~~-~~~~~p~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~ 96 (409)
T PLN00143 18 AVKFLKENFNEDDHRLAISFGFGDPSCF-ECFRTTNIAEDAIVEAVRSAKFNSYAPTGGILPARRAIADYLSNDLPYQLS 96 (409)
T ss_pred HHHHHHHhcccCCCCceeeCCCCCCCCC-CCCCCCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCC
Confidence 3444443444567889999999999621 112256788888887776544567999999999999999999998899999
Q ss_pred CCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCC
Q psy14428 229 DNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMP 308 (583)
Q Consensus 229 ~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~ 308 (583)
+++|++ |+|+++++.++ +..++.+||.|++++|+|+.|...++..|++++.+++.+++++.+|++.+++.+ .
T Consensus 97 ~~~I~i--t~G~~~al~~~---~~~l~~~gd~v~v~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~---~ 168 (409)
T PLN00143 97 PDDVYL--TLGCKHAAEII---IKVLARPEANILLPRPGFPDVETYAIFHHLEIRHFDLLPEKGWEVDLDAVEAIA---D 168 (409)
T ss_pred HhhEEE--ecChHHHHHHH---HHHHcCCCCEEEEcCCCCcCHHHHHHHcCCEEEEEeccCCCCCcCCHHHHHHhc---c
Confidence 999999 99999999995 455677899999999999999999999999999999833345778999998776 4
Q ss_pred CCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCccccc
Q psy14428 309 ERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMG 388 (583)
Q Consensus 309 ~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~ 388 (583)
+++++++++|||||||.+++.+++++|+++|++++++||+||+|.+|.+++ ....++..+ +..++||+++||||+|+
T Consensus 169 ~~~~~~~~~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~--~~~~~~~~~-~~~~~vi~~~SfSK~f~ 245 (409)
T PLN00143 169 ENTIAMVIINPGNPCGSVYSYEHLNKIAETARKLGILVIADEVYGHIVFGS--KPFVPMGLF-ASIVPVITLGSISKRWM 245 (409)
T ss_pred cCCEEEEEECCCCCCCCccCHHHHHHHHHHHHHcCCeEEEEccccccccCC--CCCcchhhh-cccCcEEEEccchhhcC
Confidence 567889999999999999999999999999999999999999999999875 233344444 34568999999999999
Q ss_pred ccCccceEEEEEcCCchhHH---HHHHHHHHHHhccccCCChHHHHHHHHHhCC---hhhhhhhhhHHHHHHHHHHHHhh
Q psy14428 389 LYGERVGTFSVLTPTSDETE---RIMSQLKILIRGFYSNPPIHGARIVTEILSD---PKLKAQCDETERIMSQLKILIRG 462 (583)
Q Consensus 389 l~GlRiG~lv~~~p~~~~~~---~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~---~~~~~~~~~~~~~~~~l~~~~r~ 462 (583)
+||+|+||+++ ++++... .+++.+.+.... ...++.+.|.++..++++ +.++++.+..++.++.+...++.
T Consensus 246 ~pGlRvG~~v~--~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 322 (409)
T PLN00143 246 IPGWGLGWLVT--CDPSGLLQICEIADSIKKALNP-APFPPTFIQAAIPEILEKTTEDFFSKTINILRAALAFCYDKLKE 322 (409)
T ss_pred CCccceEEEEe--eCchhhhhhHHHHHHHHHHHhc-cCCCCchHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999998 6432000 123344433322 334688999999999975 35666666666555555444443
Q ss_pred c--cC--CCccchhhHHHHhc
Q psy14428 463 F--YS--NPPIHGARIVTEIL 479 (583)
Q Consensus 463 ~--~~--~~p~~g~~i~~~~l 479 (583)
. .. ..|.+|+|+|.++.
T Consensus 323 ~~~~~~~~~p~gg~f~w~~l~ 343 (409)
T PLN00143 323 IPCIMCPQKAEGAFFALVKLN 343 (409)
T ss_pred CCCCCCCCCCCeeEEEEEecc
Confidence 2 22 35778999999875
|
|
| >PRK06207 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=370.70 Aligned_cols=297 Identities=18% Similarity=0.170 Sum_probs=240.3
Q ss_pred CCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCC-CCeEEEecCCc
Q psy14428 162 HPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKD-NRLAIVQGISG 240 (583)
Q Consensus 162 ~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~-~~I~i~~t~G~ 240 (583)
..+.++|+.|.++. . .+++.+.+++.+........+|++..|.++||++|++++.+.+|+.+++ ++|++ |+|+
T Consensus 38 ~~~~i~l~~g~~~~-~---~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~l~~~~g~~~~~~~~I~i--t~Ga 111 (405)
T PRK06207 38 PGRPVDFSHGDVDA-H---EPTPGAFELFSAGVERGGVQAYTEYRGDADIRELLAARLAAFTGAPVDAADELII--TPGT 111 (405)
T ss_pred CCCceecCCcCCCC-C---CCCHHHHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEE--eCCc
Confidence 34678999999862 1 2446777776666644335679999999999999999999888988998 99999 9999
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEeccc----CCCCCCChhhHHHHHHcCCCCcEEEEe
Q psy14428 241 SGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFD----NKTNGLDFAGMMEDIKAMPERSILFLQ 316 (583)
Q Consensus 241 ~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d----~~~~g~d~~~l~~~l~~~~~~~~~i~i 316 (583)
++++.++ +..++.+||+|++++|+|+.+...++..|++++.+++ + ++++++|++.+++.+ .++++++++
T Consensus 112 ~~al~~~---~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~g~~v~~v~~-~~~~~~~~~~~d~~~l~~~~---~~~~k~v~l 184 (405)
T PRK06207 112 QGALFLA---VAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQL-DYLSADKRAGLDLDQLEEAF---KAGVRVFLF 184 (405)
T ss_pred HHHHHHH---HHHhcCCCCEEEEeCCCchhHHHHHHHcCCEEEEEec-cccCcccCCCcCHHHHHHhh---hhcCeEEEE
Confidence 9999985 5556778999999999999999999999999999998 4 124789999998887 456789999
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceE
Q psy14428 317 TSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGT 396 (583)
Q Consensus 317 ~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~ 396 (583)
+|||||||.+++.+++++|+++|++++++||+||+|.+|.|++. +.+++.++....+++|+++||||+|++||+|+||
T Consensus 185 ~~P~NPTG~~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~--~~~~~~~~~~~~~~vi~i~SfSK~~~lpGlRiG~ 262 (405)
T PRK06207 185 SNPNNPAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLYDGT--SYTHLRALPIDPENVITIMGPSKTESLSGYRLGV 262 (405)
T ss_pred CCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC--CCCchhcCCCCcCcEEEEecchhhccCcccceEE
Confidence 99999999999999999999999999999999999999998762 3334444323357999999999999999999999
Q ss_pred EEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCC--hhhhhhhhhHHHHHHHHHHHHhh--ccC-CCccch
Q psy14428 397 FSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSD--PKLKAQCDETERIMSQLKILIRG--FYS-NPPIHG 471 (583)
Q Consensus 397 lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~l~~~~r~--~~~-~~p~~g 471 (583)
+++ | +++++++.+.......+.+.+.|.++..++++ ++++++++..++....+...++. .+. .+|.+|
T Consensus 263 ii~--~-----~~l~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~gg 335 (405)
T PRK06207 263 AFG--S-----PAIIDRMEKLQAIVSLRAAGYSQAVLRTWFSEPDGWMKDRIARHQAIRDDLLRVLRGVEGVFVRAPQAG 335 (405)
T ss_pred EEc--C-----HHHHHHHHHHHhHhccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCee
Confidence 998 7 58999999988888888899999999999976 34555554444333333333332 234 457789
Q ss_pred hhHHHHhcC
Q psy14428 472 ARIVTEILS 480 (583)
Q Consensus 472 ~~i~~~~l~ 480 (583)
+|+|+++..
T Consensus 336 ~fl~~~l~~ 344 (405)
T PRK06207 336 SYLFPRLPR 344 (405)
T ss_pred EEEEEeCcc
Confidence 999998753
|
|
| >PLN02187 rooty/superroot1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=373.64 Aligned_cols=313 Identities=13% Similarity=0.116 Sum_probs=250.6
Q ss_pred CCCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCC
Q psy14428 160 DPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGIS 239 (583)
Q Consensus 160 ~~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G 239 (583)
...+++|+|+.|+|+.. +.+.+++.+.+++.+.+..+...+|.+..|.++||++||+|+++++++.+++++|++ |+|
T Consensus 63 ~~~~~vi~l~~Gdp~~~-p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~aiA~~~~~~~~~~~~~~~I~i--t~G 139 (462)
T PLN02187 63 DVNKTILPLGHGDPSVY-PCFRTCIEAEDAVVDVLRSGKGNSYGPGAGILPARRAVADYMNRDLPHKLTPEDIFL--TAG 139 (462)
T ss_pred CCCCCeEECCCCCCCCC-CCCCCCHHHHHHHHHHHhCCCCCCCCCCCChHHHHHHHHHHHHHhcCCCCCcccEEE--eCC
Confidence 45678999999988632 223355678888877776554678999999999999999999988899999999999 999
Q ss_pred chhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCC
Q psy14428 240 GSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSS 319 (583)
Q Consensus 240 ~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p 319 (583)
+++++.++ +..++++||+|++++|+|+.|...++..|++++.+++.+++++++|++.+++.+ .+++++++++||
T Consensus 140 ~~~al~~~---~~~l~~pGd~Vlv~~P~y~~y~~~~~~~g~~~~~~~l~~~~~~~~d~~~l~~~~---~~~~~~v~i~nP 213 (462)
T PLN02187 140 CNQGIEIV---FESLARPNANILLPRPGFPHYDARAAYSGLEVRKFDLLPEKEWEIDLEGIEAIA---DENTVAMVVINP 213 (462)
T ss_pred HHHHHHHH---HHHhcCCCCEEEEeCCCCccHHHHHHHcCCEEEEEeCccccCCccCHHHHHHhc---CCCcEEEEEeCC
Confidence 99999985 455677899999999999999999999999999999843346899999998776 567889999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEE
Q psy14428 320 HNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSV 399 (583)
Q Consensus 320 ~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~ 399 (583)
|||||.+++.+++++|+++|++++++||+||+|.+|.|++ .+..++..+. ...+||+++||||+|++||||+||+++
T Consensus 214 ~NPTG~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~--~~~~s~~~~~-~~~~vi~l~SfSK~f~~pGlRiG~~v~ 290 (462)
T PLN02187 214 NNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGD--NPFVSMGKFA-SIVPVLTLAGISKGWVVPGWKIGWIAL 290 (462)
T ss_pred CCCCCCccCHHHHHHHHHHHHHCCCEEEEeccccccccCC--CCceeHHHhc-cCCcEEEEecchhhcCCccceeEEEEe
Confidence 9999999999999999999999999999999999999975 2334555543 235799999999999999999999998
Q ss_pred EcCCchhHHHHHHHHHHHHhcccc--CCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHH
Q psy14428 400 LTPTSDETERIMSQLKILIRGFYS--NPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTE 477 (583)
Q Consensus 400 ~~p~~~~~~~li~~l~~~~~~~~~--~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~ 477 (583)
++++..-++++.+...+..... +++.+.|.++..++++..
T Consensus 291 --~~p~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~~~~L~~~~------------------------------------ 332 (462)
T PLN02187 291 --NDPEGVFETTKVLQSIKQNLDVTPDPATIIQAALPAILEKAD------------------------------------ 332 (462)
T ss_pred --cCchhHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcCc------------------------------------
Confidence 6542111245577666665544 568999999999886411
Q ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCC
Q psy14428 478 ILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLS 535 (583)
Q Consensus 478 ~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~ 535 (583)
.++++++++.+.++|+.+.+.|++. |+......|++|+|.|..++
T Consensus 333 -----------~~~l~~~~~~l~~~r~~l~~~L~~~--~~~~~~~~P~gg~fl~~~l~ 377 (462)
T PLN02187 333 -----------KNFFAKKNKILKHNVDLVCDRLKDI--PCVVCPKKPESCTYLLTKLE 377 (462)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHhhC--CCCcCCCCCCEeEEEEeecC
Confidence 1235566677788999999999874 32222346899999998765
|
|
| >PRK08068 transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=368.36 Aligned_cols=301 Identities=17% Similarity=0.171 Sum_probs=247.3
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCC-CeEEEecCC
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDN-RLAIVQGIS 239 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~-~I~i~~t~G 239 (583)
..++.++|+.|.|+.+ +++.+.+++.+........+|+|..|.++||+++|+|+.+.+|++++++ +|++ |+|
T Consensus 30 ~~~~~i~l~~~~p~~~-----~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~aia~~~~~~~g~~~~~~~~i~i--t~G 102 (389)
T PRK08068 30 EGHDVINLGQGNPDQP-----TPEHIVEALQEAAENPANHKYSPFRGYPFLKEAAADFYKREYGVTLDPETEVAI--LFG 102 (389)
T ss_pred cCCCeEEecCCCCCCC-----CCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEE--cCC
Confidence 4567899999987532 3466788877766544456899999999999999999988889889998 8999 999
Q ss_pred chhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCC-CCCCChhhHHHHHHcCCCCcEEEEeCC
Q psy14428 240 GSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNK-TNGLDFAGMMEDIKAMPERSILFLQTS 318 (583)
Q Consensus 240 ~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~-~~g~d~~~l~~~l~~~~~~~~~i~i~~ 318 (583)
+++++.++ +..++.+||+|++++|+|+.|...++..|++++.+|+ +++ ++.+|++.+++.+ .+++++++++|
T Consensus 103 ~~~~l~~~---~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~-~~~~~~~~d~~~l~~~~---~~~~~~v~l~~ 175 (389)
T PRK08068 103 GKAGLVEL---PQCLMNPGDTILVPDPGYPDYLSGVALARAQFETMPL-IAENNFLPDYTKIPEEV---AEKAKLMYLNY 175 (389)
T ss_pred cHHHHHHH---HHHhCCCCCEEEEcCCCCcchHHHHHhcCCEEEEeec-ccccCCCCCHHHHHHhc---cccceEEEEEC
Confidence 99999884 4556778999999999999999999999999999999 543 4667888888776 45688999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEE
Q psy14428 319 SHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFS 398 (583)
Q Consensus 319 p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv 398 (583)
||||||.++|.+++++|+++|++++++||+||+|.+|.+++ ..+.++....+..+++|+++||||+||+||+|+||++
T Consensus 176 P~NPTG~~~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~--~~~~s~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~ 253 (389)
T PRK08068 176 PNNPTGAVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDG--QKPVSFLQTPGAKDVGIELYTLSKTFNMAGWRVAFAV 253 (389)
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHcCeEEEEehhhhhhccCC--CCCcChhhCCCccCCEEEEecchhccCCccceeEeEe
Confidence 99999999999999999999999999999999999998864 1233333323345689999999999999999999999
Q ss_pred EEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHh
Q psy14428 399 VLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEI 478 (583)
Q Consensus 399 ~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~ 478 (583)
+ + +++++++.+.......+++.+.|.++..++.++.
T Consensus 254 ~--~-----~~l~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~------------------------------------- 289 (389)
T PRK08068 254 G--N-----ESVIEAINLLQDHLFVSLFGAIQDAAIEALLSDQ------------------------------------- 289 (389)
T ss_pred c--C-----HHHHHHHHHHHhhccCCCChHHHHHHHHHHhCcH-------------------------------------
Confidence 8 6 5899999988777666777778888877775421
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCCh
Q psy14428 479 LSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSA 536 (583)
Q Consensus 479 l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~ 536 (583)
++++++++++.++|+.+.+.|++.+ +.+..+++|+|.|..++.
T Consensus 290 -----------~~~~~~~~~~~~~r~~~~~~L~~~g----~~~~~~~g~~~~~v~~~~ 332 (389)
T PRK08068 290 -----------SCVAELVARYESRRNAFISACREIG----WEVDAPKGSFFAWMPVPK 332 (389)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHCC----CcccCCCeeEEEEEECCC
Confidence 2255667777889999999998864 556678999999988764
|
|
| >PTZ00377 alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-42 Score=376.03 Aligned_cols=298 Identities=16% Similarity=0.135 Sum_probs=237.8
Q ss_pred hHHHHHHHHHhcc--CCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhC-CCCCE
Q psy14428 184 PSVKEAERRIYEK--NLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFY-PGVKT 260 (583)
Q Consensus 184 ~~v~~a~~~~~~~--~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~-~~gd~ 260 (583)
..+.+++.++... .....|++..|.++||++||+|+.+++|+.+++++|++ |+|+++++.++ +..++ ++||.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~i--t~Ga~~al~~~---~~~l~~~~gD~ 165 (481)
T PTZ00377 91 ADVVARAKEYLNAIGGGTGAYTDSAGYPFVRKAVAAFIERRDGVPKDPSDIFL--TDGASSGIKLL---LQLLIGDPSDG 165 (481)
T ss_pred HHHHHHHHHHHHhCCCcccCcCcccCCHHHHHHHHHHHHHhcCCCCChhhEEE--cCCHHHHHHHH---HHHhccCCCCE
Confidence 3445555555443 13467999999999999999999998999999999999 99999999995 44455 67999
Q ss_pred EEEcCCCChhhHHHHhhcCCeEEEEecccC-CCCCCChhhHHHHHHcC---CCCcEEEEeCCCCCCCCCCCCHHHHHHHH
Q psy14428 261 VYFPTPTWNGHVRFCTDSRLNVGAYRYFDN-KTNGLDFAGMMEDIKAM---PERSILFLQTSSHNPTGVDLSEDQWRQLA 336 (583)
Q Consensus 261 Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~-~~~g~d~~~l~~~l~~~---~~~~~~i~i~~p~NPTG~~~s~~~~~~l~ 336 (583)
|++++|+|+.|...++..|++++.+++ ++ +++++|++.+++.+... ..++++++++|||||||.++|.+++++|+
T Consensus 166 Vlv~~P~y~~y~~~~~~~g~~~v~v~~-~~~~~~~~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~~s~e~~~~i~ 244 (481)
T PTZ00377 166 VMIPIPQYPLYSAAITLLGGKQVPYYL-DEEKGWSLDQEELEEAYEQAVRNGITPRALVVINPGNPTGQVLTRDVMEEII 244 (481)
T ss_pred EEECCCCchhHHHHHHHcCCEEEEEEe-ccccCCCCCHHHHHHHHHHHHhcCCCeeEEEEECCCCCCCcCCCHHHHHHHH
Confidence 999999999999999999999999999 54 45789999999988532 12678888899999999999999999999
Q ss_pred HHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHH----Hh---cCcEEEEecCccc-ccccCccceEEEEEc-CCchhH
Q psy14428 337 VVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFA----KE---VGQLCLAQSFSKN-MGLYGERVGTFSVLT-PTSDET 407 (583)
Q Consensus 337 ~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~----~~---~~~vi~i~S~SK~-~~l~GlRiG~lv~~~-p~~~~~ 407 (583)
++|++++++||+||+|.++.|++. .+..++.++. .. ..++|+++||||+ +++||||+||+++.. |
T Consensus 245 ~~a~~~~~~iI~De~Y~~l~~~~~-~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~GlRiG~~~~~~~p----- 318 (481)
T PTZ00377 245 KFCYEKGIVLMADEVYQENIYDGE-KPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIGECGRRGGYFELTNIP----- 318 (481)
T ss_pred HHHHHCCCEEEEehhhHhhccCCC-CCcccHHHHHHhhcccccCCeEEEEEecCCcccccCCcCceEEEEEeCCC-----
Confidence 999999999999999999998531 1333443321 11 1379999999998 599999999999621 3
Q ss_pred HHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHhcCChhHHHH
Q psy14428 408 ERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQ 487 (583)
Q Consensus 408 ~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~l~~~~~~~~ 487 (583)
+++++++.+.+. ...+++.++|.++..+++++... ......
T Consensus 319 ~~li~~l~~~~~-~~~~~~~~~Q~a~~~~l~~~~~~--------------------------------------~~~~~~ 359 (481)
T PTZ00377 319 PEVREQIYKLAS-INLCSNVVGQLMTGLMCNPPREG--------------------------------------DASYPL 359 (481)
T ss_pred HHHHHHHHHHhh-eecCCChHHHHHHHHHhCCCCCC--------------------------------------cccHHH
Confidence 589999998774 45579999999999999753110 001234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCC
Q psy14428 488 WFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLS 535 (583)
Q Consensus 488 ~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~ 535 (583)
|.+++++++.+++++|+.+.+.|++. || +.+..|++|+|.|..++
T Consensus 360 ~~~~~~~~~~~~~~rr~~l~~~L~~~--~g-~~~~~p~gg~fl~~~~~ 404 (481)
T PTZ00377 360 YKRERDAIFTSLKRRAELLTDELNKI--EG-VSCQPVEGAMYAFPRIE 404 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC--CC-cEeecCCeeEEEEeecc
Confidence 56667777888899999999999875 33 67788999999997653
|
|
| >PRK09276 LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-42 Score=364.47 Aligned_cols=302 Identities=15% Similarity=0.085 Sum_probs=247.9
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCC-CeEEEecCC
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDN-RLAIVQGIS 239 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~-~I~i~~t~G 239 (583)
..++.++|+.|+++.. +++.+.+++.+.........|++..|.++||+++++|+++.+|+.++++ +|++ |+|
T Consensus 29 ~~~~~i~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~ii~--t~G 101 (385)
T PRK09276 29 RGVDVISLGIGDPDLP-----TPDHIIEAMCKAVEDPENHQYPSYEGMLEFRKAVADWYKRRFGVELDPETEVIS--LIG 101 (385)
T ss_pred cCCCEEEecCCCCCCC-----CCHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEE--ccC
Confidence 3567899999987522 4578888888776543357899999999999999999998888888887 5888 999
Q ss_pred chhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCC
Q psy14428 240 GSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSS 319 (583)
Q Consensus 240 ~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p 319 (583)
+++++.++ +..++++||+|++++|+|+.|...++..|++++.+|+.+++++.+|++.+++.+ .+++++++++||
T Consensus 102 ~~~~i~~~---~~~~~~~gd~Vl~~~P~y~~~~~~~~~~g~~~~~v~~~~~~g~~~d~~~l~~~~---~~~~~~v~l~~p 175 (385)
T PRK09276 102 SKEGIAHI---PLAFVNPGDVVLVPDPGYPVYKIGTIFAGGEPYFMPLKEENGFLPDLDAIPEDV---AKKAKLMFINYP 175 (385)
T ss_pred cHHHHHHH---HHHhCCCCCEEEEcCCCCcChHHHHHHcCCEEEEEecCCCCCCcCCHHHHHHhc---cccceEEEEeCC
Confidence 99999985 455677899999999999999999999999999999832334557888887766 457889999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEE
Q psy14428 320 HNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSV 399 (583)
Q Consensus 320 ~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~ 399 (583)
|||||.+++.+++++|+++|++++++||+||+|.+|.+++ ...+++.++.+..+++|+++||||.||+||+|+||+++
T Consensus 176 ~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~--~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~i~ 253 (385)
T PRK09276 176 NNPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDG--YKPPSFLEVPGAKDVGIEFHSLSKTYNMTGWRIGFAVG 253 (385)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCcEEEEecchhheecCC--CCCCChhccCCCcCCEEEEecchhhcCCcchhheeeeC
Confidence 9999999999999999999999999999999999999865 23445555433346899999999999999999999998
Q ss_pred EcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHhc
Q psy14428 400 LTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEIL 479 (583)
Q Consensus 400 ~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~l 479 (583)
+ +++++++.+.+.....+++.+.|.++..++++.
T Consensus 254 --~-----~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~--------------------------------------- 287 (385)
T PRK09276 254 --N-----ADLIAGLGKVKSNVDSGVFQAIQEAGIAALNGP--------------------------------------- 287 (385)
T ss_pred --C-----HHHHHHHHHHHhhccCCCCHHHHHHHHHHHcCc---------------------------------------
Confidence 7 589999998877677778888888888887541
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCCh
Q psy14428 480 SDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSA 536 (583)
Q Consensus 480 ~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~ 536 (583)
..+++++++++.++|+.+.+.|++.+ +.+..+++|+|.|..++.
T Consensus 288 ---------~~~~~~~~~~~~~~~~~l~~~L~~~~----~~~~~~~~~~~~~v~~~~ 331 (385)
T PRK09276 288 ---------QEVVEELRKIYQERRDILVEGLRKLG----LEVEPPKATFYVWAPVPK 331 (385)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHhCC----CcccCCCcceEEEEECCC
Confidence 12245667777888999999998753 456678899999998764
|
|
| >PRK06290 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-42 Score=366.39 Aligned_cols=298 Identities=17% Similarity=0.127 Sum_probs=245.4
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCC-CCCC-CeEEEecC
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPA-FKDN-RLAIVQGI 238 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~-~~~~-~I~i~~t~ 238 (583)
++...++|+.|+++.. +++.+.+++.+.........|++ .|.++||+++|+|+.+.+|+. ++++ +|++ |+
T Consensus 42 ~~~~~i~L~~g~p~~~-----~~~~~~~~l~~~~~~~~~~~Y~~-~G~~~lr~aia~~~~~~~g~~~~~~~~~I~i--t~ 113 (410)
T PRK06290 42 PDMELIDMGVGEPDEM-----ADESVVEVLCEEAKKPENRGYAD-NGIQEFKEAAARYMEKVFGVKDIDPVTEVIH--SI 113 (410)
T ss_pred CCCCeEEcCCCCCCCC-----CCHHHHHHHHHHHhCCCCCCCCC-CCcHHHHHHHHHHHHHHcCCCcCCCcceEEE--cc
Confidence 4456899999998632 45677777766554333456864 999999999999999888988 9997 7999 99
Q ss_pred CchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCC-CCCCChhhHHHHHHcCCCCcEEEEeC
Q psy14428 239 SGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNK-TNGLDFAGMMEDIKAMPERSILFLQT 317 (583)
Q Consensus 239 G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~-~~g~d~~~l~~~l~~~~~~~~~i~i~ 317 (583)
|+++++.++ +..++++||+|++++|+|+.|...++..|++++.+|+ +++ ++.+|++.+++.+ ..++++++++
T Consensus 114 Gs~~al~~~---~~~~~~~gd~Vlv~~P~y~~~~~~~~~~g~~v~~v~~-~~~~~~~~d~~~l~~~~---~~~~k~i~l~ 186 (410)
T PRK06290 114 GSKPALAML---PSCFINPGDVTLMTVPGYPVTGTHTKYYGGEVYNLPL-LEENNFLPDLDSIPKDI---KEKAKLLYLN 186 (410)
T ss_pred CHHHHHHHH---HHHhCCCCCEEEEeCCCCccHHHHHHHcCCEEEEEec-CCCcCCcCCHHHHHHhh---cccceEEEEE
Confidence 999999985 4556778999999999999999999999999999999 543 4667888888777 4578899999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEE
Q psy14428 318 SSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTF 397 (583)
Q Consensus 318 ~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~l 397 (583)
|||||||.+++.+++++|+++|++++++||+||+|.++.+++ .+.++.++.+..+++|+++||||.||+||+|+||+
T Consensus 187 nP~NPTG~v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~---~~~s~~~~~~~~~~~I~i~SfSK~~g~~GlRiG~i 263 (410)
T PRK06290 187 YPNNPTGAVATKEFYEEVVDFAKENNIIVVQDAAYAALTFDG---KPLSFLSVPGAKEVGVEIHSLSKAYNMTGWRLAFV 263 (410)
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecchhhceeCC---CCcChhcCCCccccEEEEeechhhcCCchhheEeE
Confidence 999999999999999999999999999999999999998865 22344444333467899999999999999999999
Q ss_pred EEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHH
Q psy14428 398 SVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTE 477 (583)
Q Consensus 398 v~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~ 477 (583)
++ | +++++.+.+.+.....+++.++|.++..+++++.
T Consensus 264 i~--~-----~~l~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~------------------------------------ 300 (410)
T PRK06290 264 VG--N-----ELIVKAFATVKDNNDSGQFIAIQKAGIYALDHPE------------------------------------ 300 (410)
T ss_pred Ee--C-----HHHHHHHHHHHhccccCCcHHHHHHHHHHhhCcH------------------------------------
Confidence 99 7 5899999988887778888899999988887631
Q ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCCh
Q psy14428 478 ILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSA 536 (583)
Q Consensus 478 ~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~ 536 (583)
| ++++++.+.++|+.+.+.|++.+ +.+..+++|+|.|..++.
T Consensus 301 ----------~---~~~~~~~~~~~~~~l~~~L~~~g----~~~~~p~g~f~l~v~lp~ 342 (410)
T PRK06290 301 ----------I---TEKIREKYSRRLDKLVKILNEVG----FKAEMPGGTFYLYVKAPK 342 (410)
T ss_pred ----------H---HHHHHHHHHHHHHHHHHHHHhCC----CeecCCCeeeEEEEECCC
Confidence 1 33455666788888889888764 556678999999988764
|
|
| >PRK09148 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-42 Score=366.33 Aligned_cols=302 Identities=14% Similarity=0.123 Sum_probs=246.6
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCC-CeEEEecCC
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDN-RLAIVQGIS 239 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~-~I~i~~t~G 239 (583)
.+++.++|+.|.++.. +++.+.+++.+........+|+++.|.++||+++|+++++++|+.++++ +|++ |+|
T Consensus 28 ~~~~~i~l~~~~p~~~-----~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~i--t~G 100 (405)
T PRK09148 28 AGADIIDLGMGNPDLP-----TPQHIVDKLCETAQDPRTHRYSASKGIPGLRRAQAAYYARRFGVKLNPDTQVVA--TLG 100 (405)
T ss_pred cCCCeEEcCCCCCCCC-----CCHHHHHHHHHHHcCcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEE--cCC
Confidence 4567899999987521 3566777777666444457899999999999999999998888889998 8999 999
Q ss_pred chhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCC
Q psy14428 240 GSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSS 319 (583)
Q Consensus 240 ~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p 319 (583)
+++++.++ +..++++||+|++++|+|+.|...++..|++++.+|+ +.++ .+++.+++.++...+++++++++||
T Consensus 101 ~~~al~~~---~~~l~~~gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~~-~~~~--~~~~~l~~~~~~~~~~~~~v~l~~P 174 (405)
T PRK09148 101 SKEGFANM---AQAITAPGDVILCPNPSYPIHAFGFIMAGGVIRSVPA-EPDE--EFFPALERAVRHSIPKPIALIVNYP 174 (405)
T ss_pred hHHHHHHH---HHHhcCCCCEEEEcCCCCcccHHHHHhcCCEEEEEeC-CCCC--CCccCHHHHHhhccccceEEEEeCC
Confidence 99999985 4556778999999999999999999999999999998 4432 2345566666544567899999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEE
Q psy14428 320 HNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSV 399 (583)
Q Consensus 320 ~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~ 399 (583)
|||||.++|.+++++|+++|++++++||+||+|.+|.+++ ...+++.++....+++|+++||||+||+||+|+||+++
T Consensus 175 ~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~--~~~~s~~~~~~~~~~~i~~~SfSK~~~~pGlR~G~~v~ 252 (405)
T PRK09148 175 SNPTAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDG--NPPPSVLQVPGAKDVTVEFTSMSKTFSMAGWRMGFAVG 252 (405)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCeEEEEeccchhhhcCC--CCCCChhhCCCccCcEEEEeccccccCCcchheeeeeC
Confidence 9999999999999999999999999999999999999865 23344544432346789999999999999999999998
Q ss_pred EcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHhc
Q psy14428 400 LTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEIL 479 (583)
Q Consensus 400 ~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~l 479 (583)
+ +++++++.+.+.....+++.+.|.++..+++++
T Consensus 253 --~-----~~~i~~l~~~~~~~~~~~~~~~q~~~~~~L~~~--------------------------------------- 286 (405)
T PRK09148 253 --N-----ERLIAALTRVKSYLDYGAFTPIQVAATAALNGP--------------------------------------- 286 (405)
T ss_pred --C-----HHHHHHHHHHHHHhccCCChHHHHHHHHHHhCc---------------------------------------
Confidence 7 689999999887777788999999998888642
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCCh
Q psy14428 480 SDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSA 536 (583)
Q Consensus 480 ~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~ 536 (583)
.++++++++.+.++|+.+.+.|++.+ +.+..+++|+|.|..++.
T Consensus 287 ---------~~~~~~~~~~~~~~r~~l~~~L~~~~----~~~~~p~~g~f~~~~l~~ 330 (405)
T PRK09148 287 ---------QDCIAEMRELYKKRRDVLVESFGRAG----WDIPPPAASMFAWAPIPE 330 (405)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHcC----CccCCCCeeEEEEEECCC
Confidence 11255667777889999999998754 445678999999988764
|
|
| >TIGR03540 DapC_direct LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-42 Score=362.77 Aligned_cols=301 Identities=16% Similarity=0.096 Sum_probs=248.7
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCC-CeEEEecCC
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDN-RLAIVQGIS 239 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~-~I~i~~t~G 239 (583)
.+++.++|+.|+++.. +++.+.+++.+.......++|+++.|.++||+++|+|+.+.+|+.++++ +|++ |+|
T Consensus 27 ~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~vi~--t~G 99 (383)
T TIGR03540 27 EGVDVISLGIGDPDLP-----TPKHIVEALCKAAENPENHRYPSYEGMLAYRQAVADWYKRRFGVELDPETEVLS--LIG 99 (383)
T ss_pred cCCCeEEeCCCCCCCC-----CCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCeEEE--CCC
Confidence 4578899999987522 4577888877766543457899999999999999999998888888887 6999 999
Q ss_pred chhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCC-CCCCChhhHHHHHHcCCCCcEEEEeCC
Q psy14428 240 GSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNK-TNGLDFAGMMEDIKAMPERSILFLQTS 318 (583)
Q Consensus 240 ~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~-~~g~d~~~l~~~l~~~~~~~~~i~i~~ 318 (583)
+++++.++ +..++.+||.|++++|+|+.+...++..|++++.+|+ +++ ++.+|++.+++.+ .+++++++++|
T Consensus 100 ~~~~l~~~---~~~~~~~gd~vlv~~P~y~~~~~~~~~~G~~v~~v~~-~~~~g~~~d~~~l~~~~---~~~~~~v~i~~ 172 (383)
T TIGR03540 100 SKEGIAHI---PLAFVNPGDIVLVPDPGYPVYRIGTLFAGGEPYEMPL-KEENGFLPDFDAIPEDI---AKKAKLMFINY 172 (383)
T ss_pred cHHHHHHH---HHHhCCCCCEEEEeCCCCcchHHHHHhcCCEEEEEec-CcccCCccCHHHHHhhc---cccceEEEEeC
Confidence 99999985 4556778999999999999999999999999999999 543 4567898988776 45788999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEE
Q psy14428 319 SHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFS 398 (583)
Q Consensus 319 p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv 398 (583)
||||||.+++.+++++|+++|++++++||+||+|.++.+++ ...+++.++....+++|+++||||+||+||+|+||++
T Consensus 173 P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~--~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~i 250 (383)
T TIGR03540 173 PNNPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDG--YKAPSFLEVDGAKDVGIEFHSLSKTYNMTGWRIGMAV 250 (383)
T ss_pred CCCCcCccCCHHHHHHHHHHHHHcCEEEEEecchhhhccCC--CCCcCcccCCCcccCEEEEEecccccCCccceeeEEe
Confidence 99999999999999999999999999999999999999865 2334454432234689999999999999999999999
Q ss_pred EEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHh
Q psy14428 399 VLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEI 478 (583)
Q Consensus 399 ~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~ 478 (583)
+ + +++++++.........+++.+.|.++..++++.
T Consensus 251 ~--~-----~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~-------------------------------------- 285 (383)
T TIGR03540 251 G--N-----ADLIAGLGKVKTNVDSGVFQAIQYAAIAALNGP-------------------------------------- 285 (383)
T ss_pred C--C-----HHHHHHHHHHHHhcccCCChHHHHHHHHHHhCC--------------------------------------
Confidence 8 7 589999988877667788889999888887652
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCCh
Q psy14428 479 LSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSA 536 (583)
Q Consensus 479 l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~ 536 (583)
.++++++++++.++|+.+.+.|++.+ +.+..+++|+|.|..++.
T Consensus 286 ----------~~~~~~~~~~~~~~~~~~~~~L~~~~----~~~~~~~~~~~~~~~l~~ 329 (383)
T TIGR03540 286 ----------QDVVKEIRKIYQRRRDLLLEALKKIG----IDVEKPKATFYVWVPVPE 329 (383)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHhCC----CEecCCCcceEEEEECCC
Confidence 11245566777888999999998864 556678899999998864
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation. |
| >PRK09147 succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-42 Score=363.85 Aligned_cols=297 Identities=13% Similarity=0.102 Sum_probs=242.9
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCC-CCCC-CeEEEecC
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPA-FKDN-RLAIVQGI 238 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~-~~~~-~I~i~~t~ 238 (583)
.+.+.++|+.|+++.. +++.+.+++.+.... ..+|++..|.++||++||+|+.+++|+. ++++ +|++ |+
T Consensus 27 ~~~~~i~l~~~~p~~~-----~~~~~~~~~~~~~~~--~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~~i~i--t~ 97 (396)
T PRK09147 27 ADLPPISLSIGEPKHP-----TPAFIKDALAANLDG--LASYPTTAGLPALREAIAAWLERRYGLPALDPATQVLP--VN 97 (396)
T ss_pred cCCCeEecCCCCCCCC-----CCHHHHHHHHHHhhh--hcCCCCCCCCHHHHHHHHHHHHHHhCCCcCCccceEEE--CC
Confidence 4678899999998632 457888887776542 5789999999999999999999888988 8985 9999 99
Q ss_pred CchhHHHHHHHHHHHhCCC---CCEEEEcCCCChhhHHHHhhcCCeEEEEecccC-CCCCCChhhHHHHHHcCCCCcEEE
Q psy14428 239 SGSGSLRVGTAFLERFYPG---VKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDN-KTNGLDFAGMMEDIKAMPERSILF 314 (583)
Q Consensus 239 G~~~al~l~~~~l~~~~~~---gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~-~~~g~d~~~l~~~l~~~~~~~~~i 314 (583)
|+++++.++ +..++.+ ||.|++++|+|+.|...++..|++++.+|+ ++ +++++|++.+++.+ .++++++
T Consensus 98 G~~~al~~~---~~~l~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~vp~-~~~~~~~~d~~~l~~~~---~~~~k~i 170 (396)
T PRK09147 98 GSREALFAF---AQTVIDRDGPGPLVVCPNPFYQIYEGAALLAGAEPYFLNC-DPANNFAPDFDAVPAEV---WARTQLL 170 (396)
T ss_pred ChHHHHHHH---HHHHcCCCCCCCEEEEcCCCccchHHHHHhcCCEEEEecc-CccccCccCHHHHHHHH---hhccEEE
Confidence 999999985 5567777 899999999999999999999999999999 54 35789999998876 3468899
Q ss_pred EeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHH-HHHHH----HhcCcEEEEecCcccccc
Q psy14428 315 LQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFS-LRYFA----KEVGQLCLAQSFSKNMGL 389 (583)
Q Consensus 315 ~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~-~~~~~----~~~~~vi~i~S~SK~~~l 389 (583)
++||||||||.++|.+++++|+++|++++++||+||+|.++.+++. .+..+ +.... +..++||+++||||.|++
T Consensus 171 ~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~ 249 (396)
T PRK09147 171 FVCSPGNPTGAVLPLDDWKKLFALSDRYGFVIASDECYSEIYFDEA-APPLGLLEAAAELGRDDFKRLVVFHSLSKRSNV 249 (396)
T ss_pred EEcCCCCCcCccCCHHHHHHHHHHHHHcCeEEEeeccccccccCCC-CCCchhhhhccccCccccccEEEEeccccccCC
Confidence 9999999999999999999999999999999999999999998752 11212 22211 124799999999999999
Q ss_pred cCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCcc
Q psy14428 390 YGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPI 469 (583)
Q Consensus 390 ~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~ 469 (583)
||+|+||+++ | +++++++.+.......+++.+.|.++...+.+.
T Consensus 250 ~GlRiG~~~~--~-----~~l~~~~~~~~~~~~~~~~~~~q~a~~~~~~~~----------------------------- 293 (396)
T PRK09147 250 PGLRSGFVAG--D-----AALLKKFLLYRTYHGCAMPPAVQAASIAAWNDE----------------------------- 293 (396)
T ss_pred ccceeeeecC--C-----HHHHHHHHHHhhhcccCCCHHHHHHHHHHhcch-----------------------------
Confidence 9999999998 7 589999988776666788889998876665431
Q ss_pred chhhHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCC
Q psy14428 470 HGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLS 535 (583)
Q Consensus 470 ~g~~i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~ 535 (583)
+++++.++.++++|+.+.+.|++. +.+..|++|+|.|..++
T Consensus 294 --------------------~~~~~~~~~~~~~~~~~~~~L~~~-----~~~~~p~~g~f~~~~~~ 334 (396)
T PRK09147 294 --------------------AHVRENRALYREKFDAVTPILAPV-----LDVQLPDAGFYLWAKVP 334 (396)
T ss_pred --------------------hHHHHHHHHHHHHHHHHHHHHHHh-----cCCCCCCeeEEEEEECC
Confidence 124555667778888888888763 23567899999999886
|
|
| >PLN02656 tyrosine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=363.15 Aligned_cols=325 Identities=15% Similarity=0.106 Sum_probs=256.2
Q ss_pred hhhHhhcccc-ccCCCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCC
Q psy14428 148 KPLKQQLKGF-NKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPA 226 (583)
Q Consensus 148 ~~i~~l~~~~-~~~~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~ 226 (583)
+.++.++... .+..+.+.|+|++|+|+.. ....+++.+.+++.+.+......+|+|..|.++||++++++++..+|+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~ 93 (409)
T PLN02656 15 GILSLLMESIDDEENGKRVISLGMGDPTAY-SCFHTTHVAQEAVVDALQSNKFNGYAPTVGLPQARRAIAEYLSRDLPYK 93 (409)
T ss_pred hHHHHHHHhccccccCCeeeecCCCCCCcC-CCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 3445444332 2335678999999999622 1122568888888887765446789999999999999999999888999
Q ss_pred CCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHc
Q psy14428 227 FKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKA 306 (583)
Q Consensus 227 ~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~ 306 (583)
+++++|++ |+|+++++.++ +..++.+||+|++++|+|+.|...++..|++++.+|+.+++++++|++.+++.+
T Consensus 94 ~~~~~i~~--t~G~~~al~~~---~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~-- 166 (409)
T PLN02656 94 LSLDDVFI--TSGCTQAIDVA---LSMLARPGANILLPRPGFPIYELCAAFRHLEVRYVDLLPEKGWEVDLDAVEALA-- 166 (409)
T ss_pred CCcccEEE--eCChHHHHHHH---HHHHhCCCCeEEEeCCCCCcHHHHHHHcCCEEEEEeCCCcCCCCCCHHHHHHHh--
Confidence 99999999 99999999985 344567799999999999999999999999999999832335678999998877
Q ss_pred CCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCccc
Q psy14428 307 MPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKN 386 (583)
Q Consensus 307 ~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~ 386 (583)
.+++++++++|||||||.+++.+++++|+++|++++++||+||+|.+|.|++ ....++.++ +..++||+++||||+
T Consensus 167 -~~~~~~v~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~--~~~~~~~~~-~~~~~vi~~~SfSK~ 242 (409)
T PLN02656 167 -DQNTVALVIINPGNPCGNVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGS--NPFVPMGVF-GSIVPVLTLGSLSKR 242 (409)
T ss_pred -ccCceEEEEECCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCC--CCcccHHHh-cccCcEEEEcccchh
Confidence 4568889999999999999999999999999999999999999999999976 233455554 445689999999999
Q ss_pred ccccCccceEEEEEcCCchh---HHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhc
Q psy14428 387 MGLYGERVGTFSVLTPTSDE---TERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGF 463 (583)
Q Consensus 387 ~~l~GlRiG~lv~~~p~~~~---~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~ 463 (583)
|++||+|+||+++ |+++. -+++++++.+.... ..+++.+.|.++..++++..
T Consensus 243 f~~pGlRiG~~i~--~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~q~a~~~~l~~~~---------------------- 297 (409)
T PLN02656 243 WIVPGWRLGWFVT--TDPSGSFRDPKIVERIKKYFDI-LGGPATFIQAAVPTILEQTD---------------------- 297 (409)
T ss_pred ccCcceeEEEEEE--eCcccccccHHHHHHHHHHHhh-hcCCCHHHHHHHHHHHhcCc----------------------
Confidence 9999999999999 64210 03688888876553 45788999999999986421
Q ss_pred cCCCccchhhHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCCh
Q psy14428 464 YSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSA 536 (583)
Q Consensus 464 ~~~~p~~g~~i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~ 536 (583)
.+.++++++++.++|+.+.+.|++. ++......|++|+|.|..++.
T Consensus 298 -------------------------~~~~~~~~~~~~~~r~~~~~~L~~~--~~~~~~~~p~gg~~~w~~l~~ 343 (409)
T PLN02656 298 -------------------------ESFFKKTINILKQSSDICCDRIKEI--PCITCPHKPEGSMAVMVKLNL 343 (409)
T ss_pred -------------------------HHHHHHHHHHHHHHHHHHHHHHhhC--CCCcCCcCCCeEEEEEEecch
Confidence 0124455666778899999999874 222123568999999998753
|
|
| >PLN02450 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-42 Score=370.70 Aligned_cols=306 Identities=15% Similarity=0.196 Sum_probs=240.3
Q ss_pred CCC-CccccCCccccCCCCCCCCChHHHHHHHHHhcc-----------CCCCCCCCCCCCHHHHHHHHHHHhCCCC--CC
Q psy14428 161 PHP-KKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEK-----------NLDHEYANIGGDAKFCKLAAQLAYGEDF--PA 226 (583)
Q Consensus 161 ~~~-~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~-----------~~~~~Y~~~~G~~~Lr~aia~~~~~~~g--~~ 226 (583)
.+| +.|+|+.+++. .+.+.+.+.+...... .....|++..|.++||++||+|+.+.++ +.
T Consensus 35 ~~p~g~i~L~~~En~------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~ 108 (468)
T PLN02450 35 KNPSGIIQMGLAENQ------LSFDLIESWLAKNPDAAGLKRNGQSIFRELALFQDYHGLPAFKNALAEFMSEIRGNKVT 108 (468)
T ss_pred cCCCeeEEeehhHhH------hhHHHHHHHHHhCchhhhcccccccchhhhhcCCCCCChHHHHHHHHHHHHHhhCCCCC
Confidence 344 67999998873 2335555555443210 1234599999999999999999988766 45
Q ss_pred CCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHh-hcCCeEEEEecccCCCCCCChhhHHHHHH
Q psy14428 227 FKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCT-DSRLNVGAYRYFDNKTNGLDFAGMMEDIK 305 (583)
Q Consensus 227 ~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~-~~G~~~~~v~~~d~~~~g~d~~~l~~~l~ 305 (583)
+++++|++ |+|+++++.++ +..++.+||.|++++|+|+.|...+. ..|++++++|+.+++++.+|++.+++.++
T Consensus 109 v~~~~Iii--t~Ga~~al~~l---~~~l~~pGd~Vlv~~P~Y~~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~le~~~~ 183 (468)
T PLN02450 109 FDPNKLVL--TAGATSANETL---MFCLAEPGDAFLLPTPYYPGFDRDLKWRTGVEIVPIHCSSSNGFQITESALEEAYQ 183 (468)
T ss_pred cChHHeEE--ccChHHHHHHH---HHHhCCCCCEEEECCCCCCchHHHHhhcCCcEEEEEecCCccCCcCCHHHHHHHHH
Confidence 79999999 99999999985 55677889999999999999998888 58999999998324456778888888775
Q ss_pred cC---CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHH--------hc
Q psy14428 306 AM---PERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAK--------EV 374 (583)
Q Consensus 306 ~~---~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~--------~~ 374 (583)
+. ..+++++++||||||||.+++.+++++|+++|++++++||+||+|.++.|++. +..++.+..+ ..
T Consensus 184 ~~~~~~~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~f~~~--~~~s~l~~~~~~~~~~~~~~ 261 (468)
T PLN02450 184 QAQKLNLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSGTVFDSP--GFVSVMEVLKDRKLENTDVS 261 (468)
T ss_pred HHHhcCCCeeEEEEecCCCCCCcccCHHHHHHHHHHHHHCCcEEEEEccccccccCCC--CcccHHHHhhhcccccCCCC
Confidence 42 34788899999999999999999999999999999999999999999988752 3334333221 25
Q ss_pred CcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHH
Q psy14428 375 GQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMS 454 (583)
Q Consensus 375 ~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~ 454 (583)
++|++++||||.|++||+|+||+++ ++ +.+++.+.+.. ...++|.++|.+++.+++++.+.+
T Consensus 262 ~~vi~l~S~SK~~~l~GlRiG~li~--~~----~~l~~~~~~~~--~~~~~s~~~Q~a~~~~L~~~~~~~---------- 323 (468)
T PLN02450 262 NRVHIVYSLSKDLGLPGFRVGAIYS--ND----EMVVSAATKMS--SFGLVSSQTQYLLSALLSDKKFTK---------- 323 (468)
T ss_pred CcEEEEEeccccCCCCCccEEEEEE--CC----HHHHHHHHHHh--hcCCCCHHHHHHHHHHhCCchhHH----------
Confidence 7899999999999999999999999 74 35677666553 334678999999999998743221
Q ss_pred HHHHHHhhccCCCccchhhHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCC
Q psy14428 455 QLKILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGL 534 (583)
Q Consensus 455 ~l~~~~r~~~~~~p~~g~~i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l 534 (583)
.+++++++++.++|+.+.+.|++.+ +.+..+++|+|+|.++
T Consensus 324 -----------------------------------~~l~~~~~~l~~rr~~l~~~L~~~g----i~~~~~~~g~flwi~l 364 (468)
T PLN02450 324 -----------------------------------NYLEENQKRLKQRQKKLVSGLEAAG----IKCLKSNAGLFCWVDM 364 (468)
T ss_pred -----------------------------------HHHHHHHHHHHHHHHHHHHHHHHcC----CcccCCCceEEEEEEc
Confidence 1255667788899999999998874 4567799999999887
Q ss_pred Ch
Q psy14428 535 SA 536 (583)
Q Consensus 535 ~~ 536 (583)
+.
T Consensus 365 ~~ 366 (468)
T PLN02450 365 RH 366 (468)
T ss_pred hH
Confidence 63
|
|
| >PRK05942 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-42 Score=362.89 Aligned_cols=301 Identities=15% Similarity=0.168 Sum_probs=243.6
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCC-eEEEecCC
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNR-LAIVQGIS 239 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~-I~i~~t~G 239 (583)
.+++.++|+.|.|+.+ +++.+.++..+.........|+++.|.++||+++|+|+++++++.+++++ |++ |+|
T Consensus 33 ~g~~~i~l~~g~p~~~-----~p~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~v--t~G 105 (394)
T PRK05942 33 QGLDLIDLGMGNPDGA-----APQPVIEAAIAALADPQNHGYPPFEGTASFRQAITDWYHRRYGVELDPDSEALP--LLG 105 (394)
T ss_pred cCCCeEEcCCCCCCCC-----CCHHHHHHHHHHHhCCCCccCCCCCCCHHHHHHHHHHHHHHHCCCcCCCCeEEE--ccC
Confidence 3456899999987532 33444444443333333578999999999999999999988888899984 999 999
Q ss_pred chhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCC-CCCCChhhHHHHHHcCCCCcEEEEeCC
Q psy14428 240 GSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNK-TNGLDFAGMMEDIKAMPERSILFLQTS 318 (583)
Q Consensus 240 ~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~-~~g~d~~~l~~~l~~~~~~~~~i~i~~ 318 (583)
+++++.++ +..++.+||+|++++|+|+.+...+...|++++.+|+ +++ ++++|++.+++.+ .+++++++++|
T Consensus 106 ~~~al~~~---~~~~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~-~~~~~~~~d~~~l~~~~---~~~~k~i~l~~ 178 (394)
T PRK05942 106 SKEGLTHL---ALAYVNPGDVVLVPSPAYPAHFRGPLIAGAQIYPIIL-KPENDWLIDLSSIPEEV---AQQAKILYFNY 178 (394)
T ss_pred hHHHHHHH---HHHhCCCCCEEEEcCCCCcchHHHHHHcCCEEEEeec-CCccCCccCHHHHHHhc---cccceEEEEcC
Confidence 99999985 4456777999999999999999999999999999999 543 4678999998877 46789999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEE
Q psy14428 319 SHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFS 398 (583)
Q Consensus 319 p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv 398 (583)
||||||.+++.+++++|+++|++++++||+||+|.++.+++. ...++.++.+..+++|+++||||+||+||+|+||++
T Consensus 179 P~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~--~~~~~~~~~~~~~~~i~~~SfSK~~~~~GlRiG~i~ 256 (394)
T PRK05942 179 PSNPTTATAPREFFEEIVAFARKYEIMLVHDLCYAELAFDGY--QPTSLLEIPGAKDIGVEFHTLSKTYNMAGWRVGFVV 256 (394)
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHcCeEEEEeccchhhccCCC--CCCChhhCCCccccEEEEecchhccCChhhheeeee
Confidence 999999999999999999999999999999999999998652 234454443334578999999999999999999999
Q ss_pred EEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHh
Q psy14428 399 VLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEI 478 (583)
Q Consensus 399 ~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~ 478 (583)
+ + ++++++++..+.....+++.++|.++..+++..
T Consensus 257 ~--~-----~~l~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~-------------------------------------- 291 (394)
T PRK05942 257 G--N-----RHIIQGLRTLKTNLDYGIFSALQKAAETALQLP-------------------------------------- 291 (394)
T ss_pred c--C-----HHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCc--------------------------------------
Confidence 8 6 589999998887777788899999888887531
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCCh
Q psy14428 479 LSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSA 536 (583)
Q Consensus 479 l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~ 536 (583)
.++++++++++.++|+.+.+.|++.+ +.+..+++|+|.|..++.
T Consensus 292 ----------~~~~~~~~~~~~~~~~~~~~~L~~~~----~~~~~~~~~~f~~~~~~~ 335 (394)
T PRK05942 292 ----------DSYLQQVQERYRTRRDFLIQGLGELG----WNIPPTKATMYLWVPCPV 335 (394)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHCC----CeecCCCeeeEEEEECCC
Confidence 12345566777888888989887753 456678899999988763
|
|
| >PRK07682 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-42 Score=363.09 Aligned_cols=296 Identities=18% Similarity=0.179 Sum_probs=247.5
Q ss_pred CCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCC-CeEEEecCCch
Q psy14428 163 PKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDN-RLAIVQGISGS 241 (583)
Q Consensus 163 ~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~-~I~i~~t~G~~ 241 (583)
++.|+|+.|+++.. +++.+.+++.+..... ..+|++..|.++||+++|+++.+.+|+.++++ +|++ |+|++
T Consensus 20 ~~~i~l~~~~~~~~-----~~~~~~~~~~~~~~~~-~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~--t~G~~ 91 (378)
T PRK07682 20 EGVISLGVGEPDFV-----TPWNVREASIRSLEQG-YTSYTANAGLLELRQEIAKYLKKRFAVSYDPNDEIIV--TVGAS 91 (378)
T ss_pred CCeEEeCCCCCCCC-----CCHHHHHHHHHHHhcC-CCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEE--eCChH
Confidence 46899999998632 3456777776665432 56799999999999999999998888888886 8999 99999
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccC-CCCCCChhhHHHHHHcCCCCcEEEEeCCCC
Q psy14428 242 GSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDN-KTNGLDFAGMMEDIKAMPERSILFLQTSSH 320 (583)
Q Consensus 242 ~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~-~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~ 320 (583)
+++.++ +..++++||+|++++|+|+.|...++..|++++.+++ +. +++++|++.+++.+ .+++++++++|||
T Consensus 92 ~al~~~---~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~-~~~~~~~~d~~~l~~~~---~~~~~~v~~~~p~ 164 (378)
T PRK07682 92 QALDVA---MRAIINPGDEVLIVEPSFVSYAPLVTLAGGVPVPVAT-TLENEFKVQPAQIEAAI---TAKTKAILLCSPN 164 (378)
T ss_pred HHHHHH---HHHhCCCCCEEEEeCCCchhhHHHHHHcCCEEEEeec-CCccCCCCCHHHHHhhc---CcccEEEEEECCC
Confidence 999985 4556778999999999999999999999999999998 43 35789999998877 4578888899999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEE
Q psy14428 321 NPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVL 400 (583)
Q Consensus 321 NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~ 400 (583)
||||.+++.+++++|+++|++++++||+||+|.++.+++ +..++..+.+..+++|+++||||.|++||+|+||+++
T Consensus 165 NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~---~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~~~- 240 (378)
T PRK07682 165 NPTGAVLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDE---AYTSFASIKGMRERTILISGFSKGFAMTGWRLGFIAA- 240 (378)
T ss_pred CCcCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhcccCC---CCCChhhcccccCCEEEEecCcccccChhhhhhhhhc-
Confidence 999999999999999999999999999999999999875 2334444444457899999999999999999999999
Q ss_pred cCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHhcC
Q psy14428 401 TPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEILS 480 (583)
Q Consensus 401 ~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~l~ 480 (583)
+ +++++++.+.......++|.+.|.++..+++++.
T Consensus 241 -~-----~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~--------------------------------------- 275 (378)
T PRK07682 241 -P-----VYFSEAMLKIHQYSMMCAPTMAQFAALEALRAGN--------------------------------------- 275 (378)
T ss_pred -C-----HHHHHHHHHHHHhhccCCCHHHHHHHHHHHhCCh---------------------------------------
Confidence 7 5899999988777777889999999999887531
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCC
Q psy14428 481 DPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLS 535 (583)
Q Consensus 481 ~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~ 535 (583)
.+++++++.++++|+.+.+.|++.+ +.+..+++|+|.|..++
T Consensus 276 ---------~~~~~~~~~~~~~~~~~~~~L~~~~----~~~~~p~g~~~~~~~~~ 317 (378)
T PRK07682 276 ---------DDVIRMRDSYRKRRNFFVTSFNEIG----LTCHVPGGAFYAFPSIS 317 (378)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHCC----CccCCCCeeEEEEEecc
Confidence 1145566677889999999998864 45667899999998764
|
|
| >PLN02376 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-42 Score=369.95 Aligned_cols=274 Identities=17% Similarity=0.185 Sum_probs=225.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhCCCC--CCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHh
Q psy14428 199 DHEYANIGGDAKFCKLAAQLAYGEDF--PAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCT 276 (583)
Q Consensus 199 ~~~Y~~~~G~~~Lr~aia~~~~~~~g--~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~ 276 (583)
...|.+..|.++||++||+|+.+.+| +.+++++|++ |+|++++++++ +..+++|||.|++++|+|+.|...++
T Consensus 87 ~~~y~~~~G~~~LR~aiA~~l~~~~g~~v~v~pe~Ivi--t~Ga~~al~~l---~~~l~~pGD~Vlv~~P~Y~~~~~~~~ 161 (496)
T PLN02376 87 IANFQDYHGLKKFRQAIAHFMGKARGGKVTFDPERVVM--SGGATGANETI---MFCLADPGDVFLIPSPYYAAFDRDLR 161 (496)
T ss_pred hhccCCCCCcHHHHHHHHHHHHHHhCCCCcCChhhEEE--ccchHHHHHHH---HHHhCCCCCEEEECCCCccchHHHHH
Confidence 35688999999999999999998877 7799999999 99999999985 55677889999999999999999887
Q ss_pred -hcCCeEEEEecccCCCCCCChhhHHHHHHcC---CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccC
Q psy14428 277 -DSRLNVGAYRYFDNKTNGLDFAGMMEDIKAM---PERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAY 352 (583)
Q Consensus 277 -~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~---~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y 352 (583)
..|++++++|+...+++++|++.+++++++. ..++++++++|||||||.+++.+++++|+++|++++++||+||+|
T Consensus 162 ~~~G~~vv~v~~~~~~~~~~~~~~le~a~~~a~~~~~~~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~~i~lI~DEiY 241 (496)
T PLN02376 162 WRTGVEIIPVPCSSSDNFKLTVDAADWAYKKAQESNKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIY 241 (496)
T ss_pred hhCCCEEEEEeCCCCccCcCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCc
Confidence 5899999999932345889999998765432 357888999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCchHHHHHHHHh-------cCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCC
Q psy14428 353 LGLTSGDFDKDAFSLRYFAKE-------VGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNP 425 (583)
Q Consensus 353 ~~l~~~~~~~~~~~~~~~~~~-------~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~ 425 (583)
.++.|++ .++.++.++... .+++++++||||.||+||+|+||+++ ++ +.+++.+++.. ....+
T Consensus 242 ~~~~f~~--~~~~si~~l~~~~~~~~~~~~~v~vv~S~SK~~glpGlRvG~li~--~~----~~l~~~~~~~~--~~~~v 311 (496)
T PLN02376 242 AATVFAG--GDFVSVAEVVNDVDISEVNVDLIHIVYSLSKDMGLPGFRVGIVYS--FN----DSVVSCARKMS--SFGLV 311 (496)
T ss_pred cccccCC--CCcccHHHhhccccccccCCCeEEEEEeccccCCCCcceEEEEEE--CC----HHHHHHHHHHh--hcCCC
Confidence 9999876 245566665321 14678899999999999999999999 75 35666665443 33468
Q ss_pred ChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHH
Q psy14428 426 PIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREE 505 (583)
Q Consensus 426 s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~ 505 (583)
|.+.|.+++.+++++.+. .++++++++++.++|+.
T Consensus 312 s~~~Q~a~~~~L~d~~~~---------------------------------------------~~~l~~~r~~l~~r~~~ 346 (496)
T PLN02376 312 SSQTQLMLASMLSDDQFV---------------------------------------------DNFLMESSRRLGIRHKV 346 (496)
T ss_pred CHHHHHHHHHHhCChhHH---------------------------------------------HHHHHHHHHHHHHHHHH
Confidence 899999999999874320 23466777888899999
Q ss_pred HHHHHHhcCCCCCcccccccccceeecCCCh
Q psy14428 506 LKSKILDKGSKKNWDHITNQKGMFCYTGLSA 536 (583)
Q Consensus 506 l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~ 536 (583)
+.+.|++.+ +.+..+++|+|+|.+++.
T Consensus 347 l~~~L~~~g----i~~~~~~aG~flwi~l~~ 373 (496)
T PLN02376 347 FTTGIKKAD----IACLTSNAGLFAWMDLRH 373 (496)
T ss_pred HHHHHHHCC----CcccCCCceEEEEEEchh
Confidence 999998764 456778999999998864
|
|
| >PLN02231 alanine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-41 Score=368.13 Aligned_cols=316 Identities=16% Similarity=0.155 Sum_probs=249.0
Q ss_pred CCCCCccccCCccccCCCCCCCCChHHHHHHHHHhcc-C-CCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEec
Q psy14428 160 DPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEK-N-LDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQG 237 (583)
Q Consensus 160 ~~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~-~-~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t 237 (583)
+..++.|+++.+.+. +|.+.+.++...+... + ...+|+++.|.++||++||+|+.+++|+++++++|++ |
T Consensus 126 ~~~p~~i~~~~~~~~------fp~~~i~~a~~~l~~~~~~~~~~Y~~s~G~~~lReaIA~~~~~r~g~~~~pe~I~i--T 197 (534)
T PLN02231 126 CDHPSLLDKSETHGL------FSADAIERAWQILDQIPGRATGAYSHSQGIKGLRDAIAAGIEARDGFPADPNDIFL--T 197 (534)
T ss_pred ccCCccCCCCCcccc------CCHHHHHHHHHHHHhcCCccccCcCCCCCcHHHHHHHHHHHHhccCCCCCcccEEE--e
Confidence 456788999865543 2345666665433322 2 3577999999999999999999998999999999999 9
Q ss_pred CCchhHHHHHHHHHHHhC-CCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCC-CCCCChhhHHHHHHcCC---CCcE
Q psy14428 238 ISGSGSLRVGTAFLERFY-PGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNK-TNGLDFAGMMEDIKAMP---ERSI 312 (583)
Q Consensus 238 ~G~~~al~l~~~~l~~~~-~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~-~~g~d~~~l~~~l~~~~---~~~~ 312 (583)
+|+++++.++ +..++ ++||.|++++|+|+.|...++..|++++++++ +++ ++++|++.+++.++... .+++
T Consensus 198 ~Ga~~ai~~~---~~~l~~~~gd~Vli~~P~Y~~y~~~~~~~g~~~v~~~l-~~~~~~~~d~~~Le~~l~~~~~~~~~~k 273 (534)
T PLN02231 198 DGASPAVHMM---MQLLIRSEKDGILCPIPQYPLYSASIALHGGTLVPYYL-DEATGWGLEISELKKQLEDARSKGITVR 273 (534)
T ss_pred CCHHHHHHHH---HHHhccCCCCEEEEeCCCChhHHHHHHHcCCEEEEEec-CcccCCCCCHHHHHHHHHHHhhcCCCeE
Confidence 9999999995 44455 46999999999999999999999999999999 543 58999999999886431 2678
Q ss_pred EEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHH------hcCcEEEEecCccc
Q psy14428 313 LFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAK------EVGQLCLAQSFSKN 386 (583)
Q Consensus 313 ~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~------~~~~vi~i~S~SK~ 386 (583)
+++++|||||||.++|.+++++|+++|++++++||+||+|.++.|++. ..+.++.++.. ...++|+++||||.
T Consensus 274 ~ivl~nP~NPTG~vls~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y~~~-~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~ 352 (534)
T PLN02231 274 ALVVINPGNPTGQVLAEENQRDIVEFCKQEGLVLLADEVYQENVYVPD-KKFHSFKKVARSMGYGEKDISLVSFQSVSKG 352 (534)
T ss_pred EEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCC-CCcccHHHHHhhhccccCCceEEEEeccCcc
Confidence 889999999999999999999999999999999999999999999631 23445655432 12369999999997
Q ss_pred c-cccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccC
Q psy14428 387 M-GLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYS 465 (583)
Q Consensus 387 ~-~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~ 465 (583)
+ |+||+|+||+++ ++.+ +++++++.+.+. ...+++.+.|.++..+++.+..
T Consensus 353 ~~g~pGlRiGy~~~--~~~~--~~l~~~l~k~~~-~~~~s~~~~Q~~~~~~l~~p~~----------------------- 404 (534)
T PLN02231 353 YYGECGKRGGYMEV--TGFT--SDVREQIYKVAS-VNLCSNISGQILASLVMSPPKP----------------------- 404 (534)
T ss_pred cccCCccceEEEEE--ecCC--HHHHHHHHHHHh-hhcCCChHHHHHHHHHhCCCCC-----------------------
Confidence 6 899999999998 4211 578999988765 4567788889888888864210
Q ss_pred CCccchhhHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCC
Q psy14428 466 NPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGL 534 (583)
Q Consensus 466 ~~p~~g~~i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l 534 (583)
.+ .....|.++.+++++.|.++++.+.+.|+++ +| +.+..++||||.|.++
T Consensus 405 --------------~~-~~y~~~~~~~~~i~~~~~~r~~~l~~~L~~~--~g-i~~~~p~Ggfylw~~l 455 (534)
T PLN02231 405 --------------GD-ESYESYMAEKDGILSSLARRAKTLEDALNSL--EG-VTCNKAEGAMYLFPRI 455 (534)
T ss_pred --------------Cc-chHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CC-ceecCCCeeeEEeccc
Confidence 00 0113345556677888899999999999875 33 6778899999999654
|
|
| >PRK08960 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=361.22 Aligned_cols=297 Identities=19% Similarity=0.186 Sum_probs=248.3
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
..++.++|+.|.++.. +++.+.+++.+..... ..+|.+..|.++||+++|+++.+++|+.+++++|++ |+|+
T Consensus 30 ~~~~~i~l~~g~~~~~-----~~~~v~~a~~~~~~~~-~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~i--t~G~ 101 (387)
T PRK08960 30 AGHDVIHLEIGEPDFT-----TAEPIVAAGQAALAAG-HTRYTAARGLPALREAIAGFYAQRYGVDVDPERILV--TPGG 101 (387)
T ss_pred cCCCeEEeCCCCCCCC-----CCHHHHHHHHHHHhcC-CCccCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEE--ccCc
Confidence 4567899999998522 4678888888777543 467999999999999999999988899999999999 9999
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCC-CCCCChhhHHHHHHcCCCCcEEEEeCCC
Q psy14428 241 SGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNK-TNGLDFAGMMEDIKAMPERSILFLQTSS 319 (583)
Q Consensus 241 ~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~-~~g~d~~~l~~~l~~~~~~~~~i~i~~p 319 (583)
++++.++ +..++++||+|++++|+|+.+...++..|.+++.+|+ +++ ++++|++.+++.+ .+++++++++||
T Consensus 102 ~~al~~~---~~~~~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~v~~-~~~~~~~~d~~~l~~~~---~~~~~~i~i~~p 174 (387)
T PRK08960 102 SGALLLA---SSLLVDPGKHWLLADPGYPCNRHFLRLVEGAAQLVPV-GPDSRYQLTPALVERHW---NADTVGALVASP 174 (387)
T ss_pred HHHHHHH---HHHhcCCCCEEEEcCCCCcchHHHHHhcCCeEEEEec-CcccCCCCCHHHHHHHh---CccceEEEEECC
Confidence 9999985 4456677999999999999999999999999999998 543 4678999998876 566788899999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEE
Q psy14428 320 HNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSV 399 (583)
Q Consensus 320 ~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~ 399 (583)
|||||.+++.+++++|+++|++++++||+||+|.++.+++ +..++.. ..+++|+++||||+||+||+|+||+++
T Consensus 175 ~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~---~~~~~~~---~~~~vi~~~S~SK~~g~~GlRiG~~~~ 248 (387)
T PRK08960 175 ANPTGTLLSRDELAALSQALRARGGHLVVDEIYHGLTYGV---DAASVLE---VDDDAFVLNSFSKYFGMTGWRLGWLVA 248 (387)
T ss_pred CCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCC---CCCChhh---ccCCEEEEeecccccCCcccEEEEEEc
Confidence 9999999999999999999999999999999999998864 2223322 346899999999999999999999999
Q ss_pred EcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHhc
Q psy14428 400 LTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEIL 479 (583)
Q Consensus 400 ~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~l 479 (583)
| +++++++.+.......++|.+.|.++..++.+.
T Consensus 249 --~-----~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~--------------------------------------- 282 (387)
T PRK08960 249 --P-----PAAVPELEKLAQNLYISASTPAQHAALACFEPE--------------------------------------- 282 (387)
T ss_pred --C-----HHHHHHHHHHHhhhccCCCHHHHHHHHHHhhcC---------------------------------------
Confidence 7 589999998887778889999999988887541
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc-ccccccceeecCCCh
Q psy14428 480 SDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDH-ITNQKGMFCYTGLSA 536 (583)
Q Consensus 480 ~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~-~~~~~g~f~~~~l~~ 536 (583)
+.++++++++.+.++|+.+.+.|++.+ +.. ..+++|+|.|..++.
T Consensus 283 --------~~~~l~~~~~~~~~~~~~l~~~L~~~~----~~~~~~p~g~~f~~~~~~~ 328 (387)
T PRK08960 283 --------TLAILEARRAEFARRRDFLLPALRELG----FGIAVEPQGAFYLYADISA 328 (387)
T ss_pred --------cHHHHHHHHHHHHHHHHHHHHHHHhcC----CcCCcCCCeeEEEEEeccc
Confidence 112356667777888999999998754 322 468899999988754
|
|
| >PLN00145 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-41 Score=359.96 Aligned_cols=307 Identities=15% Similarity=0.153 Sum_probs=246.0
Q ss_pred CCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCch
Q psy14428 162 HPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGS 241 (583)
Q Consensus 162 ~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~ 241 (583)
+.+.|+|+.|+|+.. +...+++.+.+++.+.+.......|++..|.++||+++|+++..+++..+++++|++ |+|++
T Consensus 51 ~~~~i~l~~G~P~~~-~~~~~~~~~~~a~~~al~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~v~i--t~G~~ 127 (430)
T PLN00145 51 PRPVLPLGHGDPSAF-PCFRTAPEAEDAVAAALRSGKYNSYSTCVGLLPARRAIAEYLSRDLPYELSTDDIYL--TAGCA 127 (430)
T ss_pred CCCeeeCCCCCCCCC-CCCCCCHHHHHHHHHHHHcCcCCCCCCCccCHHHHHHHHHHHhhccCCCCChhhEEE--eCCHH
Confidence 568999999998521 222356788888887776544568999999999999999999998999999999999 99999
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCC
Q psy14428 242 GSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHN 321 (583)
Q Consensus 242 ~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~N 321 (583)
+|+.++ +..+.++||+|++++|+|+.|...+...|++++.+++..++++++|++.+++.+ .+++++++++||||
T Consensus 128 ~al~l~---~~~l~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~---~~~~~~i~i~~P~N 201 (430)
T PLN00145 128 QAIEII---MSVLAQPGANILLPRPGYPLYEARAVFSGLEVRHFDLLPERGWEVDLEGVEALA---DENTVAMVIINPNN 201 (430)
T ss_pred HHHHHH---HHHhcCCCCEEEEcCCCCccHHHHHHHcCCEEEEeeCCcccCCcCCHHHHHHHh---CcCceEEEEeCCCC
Confidence 999985 445667899999999999999999999999999998733345789999998876 56789999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEc
Q psy14428 322 PTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLT 401 (583)
Q Consensus 322 PTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~ 401 (583)
|||.+++.+++++|+++|++++++||+||+|.+|.|++ .+..++..+ +..++||+++||||+|++||||+||+++
T Consensus 202 PtG~v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~--~~~~~~~~~-~~~~~vi~~~S~SK~~~~pG~RlG~iv~-- 276 (430)
T PLN00145 202 PCGSVYSYEHLAKIAETARKLGILVIADEVYDHLTFGS--KPFVPMGVF-GEVAPVLTLGSISKRWVVPGWRLGWIAT-- 276 (430)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCEEEEeccchhhccCC--CCccchhhh-cccCcEEEEeccccccCCCCeeEEEEEE--
Confidence 99999999999999999999999999999999999875 234455554 3357899999999999999999999998
Q ss_pred CCchhHHHHH------HHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHH
Q psy14428 402 PTSDETERIM------SQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIV 475 (583)
Q Consensus 402 p~~~~~~~li------~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~ 475 (583)
+++. .++ +.+.... ....+++.+.|.++..++++..
T Consensus 277 ~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~Q~a~~~~l~~~~---------------------------------- 318 (430)
T PLN00145 277 CDPN---GILKETKVVDSIRNYL-NISTDPATFVQGAIPQIIANTK---------------------------------- 318 (430)
T ss_pred ecch---hhhhhhHHHHHHHHHh-cccCCCCHHHHHHHHHHHhcCH----------------------------------
Confidence 5332 333 3343332 3445678899999988876410
Q ss_pred HHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc-ccccccceeecCCCh
Q psy14428 476 TEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDH-ITNQKGMFCYTGLSA 536 (583)
Q Consensus 476 ~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~-~~~~~g~f~~~~l~~ 536 (583)
.++++++++.++++|+.+.+.|++. +| +.+ ..|++|+|.|+.++.
T Consensus 319 -------------~~~~~~~~~~~~~~~~~~~~~L~~~--~g-~~~~~~P~ga~y~~v~l~~ 364 (430)
T PLN00145 319 -------------EEFFTKTLGLLKETADICYEKIKEI--KC-ITCPHKPEGSMFVMVKLDL 364 (430)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHhcC--CC-CCCCcCCCeeeEEEeccCh
Confidence 1124556667788899999999774 33 333 469999999998864
|
|
| >PRK12414 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=360.39 Aligned_cols=297 Identities=15% Similarity=0.211 Sum_probs=247.3
Q ss_pred CCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCC-CCeEEEecCCc
Q psy14428 162 HPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKD-NRLAIVQGISG 240 (583)
Q Consensus 162 ~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~-~~I~i~~t~G~ 240 (583)
.++.|+|+.|.++. + +++.+.+++.+..... ..+|+|..|.++||+++++++.+.+|+.+++ ++|++ |+|+
T Consensus 28 ~~~~i~l~~g~p~~--~---~~~~~~~~~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~i--t~g~ 99 (384)
T PRK12414 28 QHDALNLSQGAPNF--A---PDPALVEGVARAMRDG-HNQYAPMAGIAALREALAEKTERLYGARYDPASEVTV--IASA 99 (384)
T ss_pred hCCeEEcCCCCCCC--C---CCHHHHHHHHHHHHhC-CCCcCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEE--ECCh
Confidence 45689999999852 1 4678888887766543 4779999999999999999999888888776 68999 9999
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCC
Q psy14428 241 SGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSH 320 (583)
Q Consensus 241 ~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~ 320 (583)
++++.++ +..++.+||+|++++|+|..+...++..|++++.+|+ +++++.+|++.+++.+ .+++++++++|||
T Consensus 100 ~~al~~~---~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~-~~~~~~~d~~~l~~~l---~~~~~~v~i~~p~ 172 (384)
T PRK12414 100 SEGLYAA---ISALVHPGDEVIYFEPSFDSYAPIVRLQGATPVAIKL-SPEDFRVNWDEVAAAI---TPRTRMIIVNTPH 172 (384)
T ss_pred HHHHHHH---HHHhcCCCCEEEEeCCCccchHHHHHHcCCEEEEEec-CccccccCHHHHHhhc---CcccEEEEEcCCC
Confidence 9999985 4456677999999999999999999999999999998 5555789999998877 4578899999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEE
Q psy14428 321 NPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVL 400 (583)
Q Consensus 321 NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~ 400 (583)
||||.++|.+++++|+++|++++++||+||+|.++.|++. ...++.++.+..+++|+++||||.||+||+|+||+++
T Consensus 173 NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~--~~~~~~~~~~~~~~~i~~~SfSK~~~~pGlRiG~~v~- 249 (384)
T PRK12414 173 NPSATVFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGA--RHHSMARHRELAERSVIVSSFGKSYHVTGWRVGYCLA- 249 (384)
T ss_pred CCCCcCCCHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCC--CccCcccCcCccCcEEEEecccccccCccceEEEEec-
Confidence 9999999999999999999999999999999999998752 2334444333356899999999999999999999999
Q ss_pred cCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHhcC
Q psy14428 401 TPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEILS 480 (583)
Q Consensus 401 ~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~l~ 480 (583)
| +++++++.+.+.....++|.+.|.++..+++++..
T Consensus 250 -~-----~~l~~~l~~~~~~~~~~~s~~~q~a~~~~l~~~~~-------------------------------------- 285 (384)
T PRK12414 250 -P-----AELMDEIRKVHQFMVFSADTPMQHAFAEALAEPAS-------------------------------------- 285 (384)
T ss_pred -C-----HHHHHHHHHHHhheecCCCcHHHHHHHHHhcCChH--------------------------------------
Confidence 7 58999999988877889999999999998876321
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCC
Q psy14428 481 DPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLS 535 (583)
Q Consensus 481 ~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~ 535 (583)
| .++++.+.++|+.+.+.|++.+ +.+..+++|+|.|..++
T Consensus 286 -------~----~~~~~~~~~~r~~l~~~L~~~g----~~~~~~~gg~~~~~~~~ 325 (384)
T PRK12414 286 -------Y----LGLGAFYQRKRDLLARELAGSR----FELLPSEGSFFMLARFR 325 (384)
T ss_pred -------H----HHHHHHHHHHHHHHHHHHHhCC----CeecCCCcceEEEEccc
Confidence 1 1234456788888889988753 55667899999998764
|
|
| >TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-41 Score=358.60 Aligned_cols=309 Identities=14% Similarity=0.125 Sum_probs=246.3
Q ss_pred CCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCch
Q psy14428 162 HPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGS 241 (583)
Q Consensus 162 ~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~ 241 (583)
+++.++|+.|+|+.+ +...+++.+.+++.+........+|.|..|.++||+++|+++.+. +..+++++|++ |+|++
T Consensus 30 ~~~~i~l~~g~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~aia~~~~~~-~~~~~~~~i~~--t~G~~ 105 (401)
T TIGR01264 30 EKPMIKLSIGDPTVF-GNLPTDPEVMQAMKDSLDSGKYNGYAPTVGALSAREAIASYYHNP-DGPIEADDVVL--CSGCS 105 (401)
T ss_pred CCCeeecCCCCCCCc-CCCCCCHHHHHHHHHHHhccCCCCCCCCCCCHHHHHHHHHHHhhc-CCCCCHHHEEE--CcChH
Confidence 356799999999632 122356888888887776543567999999999999999999874 56789999999 99999
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCC
Q psy14428 242 GSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHN 321 (583)
Q Consensus 242 ~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~N 321 (583)
+++.++ +..++.+||+|++++|+|..|...++..|++++.+++..++++++|++.+++.+ .+++++++++||||
T Consensus 106 ~al~~~---~~~l~~~gd~v~i~~P~y~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~l~~~~---~~~~~~v~~~~p~N 179 (401)
T TIGR01264 106 HAIEMC---IAALANAGQNILVPRPGFPLYETLAESMGIEVKLYNLLPDKSWEIDLKQLESLI---DEKTAALIVNNPSN 179 (401)
T ss_pred HHHHHH---HHHhCCCCCEEEEeCCCChhHHHHHHHcCCEEEEeecCCccCCCCCHHHHHHHh---ccCceEEEEcCCCC
Confidence 999985 445667799999999999999999999999999999832335789999998877 34678889999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEc
Q psy14428 322 PTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLT 401 (583)
Q Consensus 322 PTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~ 401 (583)
|||.+++.+++++|+++|++++++||+||+|.+|.+++ ....++.++. ...+||+++||||+|++||+|+||+++
T Consensus 180 PtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~--~~~~~~~~~~-~~~~vi~~~SfSK~~~~~GlRiG~iv~-- 254 (401)
T TIGR01264 180 PCGSVFSRQHLEEILAVAERQCLPIIADEIYGDMVFSG--ATFEPLASLS-STVPILSCGGLAKRWLVPGWRLGWIII-- 254 (401)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccCC--cccccHHHcC-CCCcEEEEccCcccCCCccceEEEEEe--
Confidence 99999999999999999999999999999999999875 2344555542 234699999999999999999999999
Q ss_pred CCch-hHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHhcC
Q psy14428 402 PTSD-ETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEILS 480 (583)
Q Consensus 402 p~~~-~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~l~ 480 (583)
++++ ...++++.+.+... ...+++.+.|.++..++++..
T Consensus 255 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~a~~~~l~~~~--------------------------------------- 294 (401)
T TIGR01264 255 HDRRGILRDIRDGLVKLSQ-RILGPCTIVQGALPSILLRTP--------------------------------------- 294 (401)
T ss_pred cCcchhHHHHHHHHHHHhh-ccCCCCcHHHHHHHHHHHhCc---------------------------------------
Confidence 6421 11245555555433 356788999999988886410
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCCh
Q psy14428 481 DPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSA 536 (583)
Q Consensus 481 ~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~ 536 (583)
.++++++++.+.++|+.+.+.|+++ || +.+..|++|+|.|..++.
T Consensus 295 --------~~~l~~~~~~~~~~r~~l~~~L~~~--~~-~~~~~p~~g~f~~~~~~~ 339 (401)
T TIGR01264 295 --------QEYFDGTLSVLESNAMLCYGALAAV--PG-LRPVMPSGAMYMMVGIEM 339 (401)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHhC--CC-CcccCCCeeeEEEEEecc
Confidence 1235566777788999999999885 44 666789999999998753
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs. |
| >PRK15481 transcriptional regulatory protein PtsJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=364.63 Aligned_cols=288 Identities=14% Similarity=0.143 Sum_probs=233.9
Q ss_pred CccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhH
Q psy14428 164 KKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGS 243 (583)
Q Consensus 164 ~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~a 243 (583)
..++|+.|.++.+ +++.+.+++.+.... ...|+++.|.++||+++++|++...+ .+++|++ |+|++++
T Consensus 86 ~~i~L~~g~p~~~-----~~p~~~~~~~~~~~~--~~~Y~~~~g~~~lr~~ia~~~~~~~~---~~~~Iii--t~G~~~a 153 (431)
T PRK15481 86 PLHDLAGGNPDPQ-----RLPDLSRYFARLSRT--PRLYGDAPVSPELHAWAARWLRDDCP---VAFEIDL--TSGAIDA 153 (431)
T ss_pred hhhhhhcCCCChh-----HhHHHHHHHHHhhhh--hhhcCCcCCCHHHHHHHHHHHhhccC---CcCeEEE--ecCcHHH
Confidence 4678988877532 334577776665432 45799999999999999999976432 3579999 9999999
Q ss_pred HHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEe-CCCCCC
Q psy14428 244 LRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQ-TSSHNP 322 (583)
Q Consensus 244 l~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i-~~p~NP 322 (583)
+.++ +..++.+||.|++++|+|+.|...++..|++++.+|+ |+ .++|++.+++.+. ++++++++ ||||||
T Consensus 154 l~~~---~~~l~~pgd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~-~~--~g~~~~~l~~~~~---~~~k~i~~~p~p~NP 224 (431)
T PRK15481 154 IERL---LCAHLLPGDSVAVEDPCFLSSINMLRYAGFSASPVSV-DA--EGMQPEKLERALA---QGARAVILTPRAHNP 224 (431)
T ss_pred HHHH---HHHhCCCCCEEEEeCCCcHHHHHHHHHcCCeEEeecc-CC--CCCCHHHHHHHHh---cCCCEEEECCCCCCC
Confidence 9985 5566778999999999999999999999999999999 54 3789999988874 34555555 599999
Q ss_pred CCCCCCHHHHHHHHHHHHhc-CeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEc
Q psy14428 323 TGVDLSEDQWRQLAVVVKQR-HLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLT 401 (583)
Q Consensus 323 TG~~~s~~~~~~l~~~a~~~-~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~ 401 (583)
||.++|.+++++|+++|+++ +++||+||+|.+|.+++. .+.+ . ...+++|+++||||+|+ ||+|+||+++
T Consensus 225 TG~~~s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~~~---~~~~-~--~~~~~vi~~~SfSK~~~-~GlRiG~~i~-- 295 (431)
T PRK15481 225 TGCSLSARRAAALRNLLARYPQVLVIIDDHFALLSSSPY---HSVI-P--QTTQRWALIRSVSKALG-PDLRLAFVAS-- 295 (431)
T ss_pred CCccCCHHHHHHHHHHHHhcCCceEEecCchhhhccCCC---CCCC-c--CCCCCEEEEeeeccccC-CCceeEEEeC--
Confidence 99999999999999999999 999999999999987531 1111 1 13469999999999999 9999999999
Q ss_pred CCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHhcCC
Q psy14428 402 PTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEILSD 481 (583)
Q Consensus 402 p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~l~~ 481 (583)
| +++++++.+.......++|.+.|.+++.+++++.
T Consensus 296 ~-----~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~---------------------------------------- 330 (431)
T PRK15481 296 D-----SATSARLRLRLNSGTQWVSHLLQDLVYACLTDPE---------------------------------------- 330 (431)
T ss_pred C-----HHHHHHHHHHHhccccCCCHHHHHHHHHHHhCcc----------------------------------------
Confidence 7 5889999876666666789999999999998743
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCCh
Q psy14428 482 PKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSA 536 (583)
Q Consensus 482 ~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~ 536 (583)
|.++++++++.+.++|+.+.+.|++.+ +.+..|++|+|.|..++.
T Consensus 331 ------~~~~l~~~~~~~~~~r~~~~~~L~~~~----~~~~~p~gg~f~~~~l~~ 375 (431)
T PRK15481 331 ------YQARLAQARLFYAQRRQKLARALQQYG----IAIPSPGDGLNLWLPLDT 375 (431)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHcC----CccccCCCeEEEEEECCC
Confidence 334466777888899999999998864 445679999999998864
|
|
| >PRK09082 methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=359.98 Aligned_cols=297 Identities=13% Similarity=0.138 Sum_probs=248.8
Q ss_pred CCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCC-CeEEEecCCch
Q psy14428 163 PKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDN-RLAIVQGISGS 241 (583)
Q Consensus 163 ~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~-~I~i~~t~G~~ 241 (583)
.+.|+|+.|.++.. +++.+.+++.+..... ..+|++..|.++||+++++++.+.+++.++++ +|++ |+|++
T Consensus 30 ~~~i~l~~g~~~~~-----~~~~~~~~~~~~~~~~-~~~Y~~~~G~~~lr~~~a~~l~~~~~~~~~~~~~i~~--t~G~~ 101 (386)
T PRK09082 30 HGAINLSQGFPDFD-----GPPYLVEALAYAMAAG-HNQYPPMTGVAALREAIAAKTARLYGRQYDADSEITV--TAGAT 101 (386)
T ss_pred CCEEEecCCCCCCC-----CCHHHHHHHHHHHHcC-CCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEE--eCCHH
Confidence 46799999988532 3567788877776543 46799999999999999999998888888876 8999 99999
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCC
Q psy14428 242 GSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHN 321 (583)
Q Consensus 242 ~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~N 321 (583)
+++.++ +..++.+||+|++++|+|..+...++..|++++.+++ +++++++|++.+++.+ .++++++++++|||
T Consensus 102 ~al~~~---~~~~~~~gd~Vli~~p~y~~~~~~~~~~g~~~~~~~~-~~~~~~~d~~~l~~~~---~~~~~~v~l~~p~N 174 (386)
T PRK09082 102 EALFAA---ILALVRPGDEVIVFDPSYDSYAPAIELAGGRAVRVAL-QPPDFRVDWQRFAAAI---SPRTRLIILNTPHN 174 (386)
T ss_pred HHHHHH---HHHHcCCCCEEEEeCCCchhhHHHHHHcCCEEEEEec-CcccccCCHHHHHHhc---CccceEEEEeCCCC
Confidence 999985 4445677999999999999999999999999999999 6556889999998887 45788999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEc
Q psy14428 322 PTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLT 401 (583)
Q Consensus 322 PTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~ 401 (583)
|||.+++.+++++|+++|++++++||+||+|.++.+++ ....++.++....+++|+++||||.||+||+|+||+++
T Consensus 175 PtG~~~~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~--~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~iv~-- 250 (386)
T PRK09082 175 PSGTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDG--AGHASVLRHPELRERAFVVSSFGKTYHVTGWKVGYCVA-- 250 (386)
T ss_pred CCCcCCCHHHHHHHHHHHHHCCEEEEEehhhhhhccCC--CCCCChhhCcCccCcEEEEeechhhccchhhhhhhhhC--
Confidence 99999999999999999999999999999999999875 23345555433457999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHhcCC
Q psy14428 402 PTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEILSD 481 (583)
Q Consensus 402 p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~l~~ 481 (583)
| +++++.+++.+.....++|.+.|.+++.++++.
T Consensus 251 ~-----~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~----------------------------------------- 284 (386)
T PRK09082 251 P-----AALSAEFRKVHQYNTFTVNTPAQLALADYLRAE----------------------------------------- 284 (386)
T ss_pred C-----HHHHHHHHHHHhhhcCCCChHHHHHHHHHHhCC-----------------------------------------
Confidence 7 589999999888778889999999998887531
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCC
Q psy14428 482 PKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLS 535 (583)
Q Consensus 482 ~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~ 535 (583)
.++++++++.+.++|+.+.+.|++.+ +.+..+++|+|.|..++
T Consensus 285 -------~~~~~~~~~~~~~~~~~~~~~L~~~~----~~~~~~~g~~~~~~~~~ 327 (386)
T PRK09082 285 -------PEHYLELPAFYQAKRDRFRAALANSR----FKLLPCEGTYFQLVDYS 327 (386)
T ss_pred -------hHHHHHHHHHHHHHHHHHHHHHHhCC----CcccCCCeeEEEEEecc
Confidence 01244556667888888999988753 55677899999998875
|
|
| >PRK07683 aminotransferase A; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-41 Score=355.32 Aligned_cols=298 Identities=17% Similarity=0.221 Sum_probs=247.0
Q ss_pred CCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCC-CeEEEecCCc
Q psy14428 162 HPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDN-RLAIVQGISG 240 (583)
Q Consensus 162 ~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~-~I~i~~t~G~ 240 (583)
.++.++|+.|.+.. .+++.+.+++.+..... ...|++..|.++||+++|+++.+++|+.++++ +|++ |+|+
T Consensus 27 ~~~~i~l~~~~p~~-----~~~~~~~~a~~~~~~~~-~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~~I~~--t~G~ 98 (387)
T PRK07683 27 YDNLISLTIGQPDF-----PTPSHVKEAAKRAITEN-YTSYTHNAGLLELRKAACNFVKDKYDLHYSPESEIIV--TIGA 98 (387)
T ss_pred cCCeEEecCCCCCC-----CCCHHHHHHHHHHHhcC-CCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEE--eCCh
Confidence 45779999998752 14577888888877643 57899999999999999999998888989998 9999 9999
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCC
Q psy14428 241 SGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSH 320 (583)
Q Consensus 241 ~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~ 320 (583)
++|+.++ +..++.+||+|++++|+|..|...++..|++++.+++ +++++.+|.+.+++.+ .+++++++++|||
T Consensus 99 ~~al~~~---~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~l~~~~---~~~~~~i~i~~p~ 171 (387)
T PRK07683 99 SEAIDIA---FRTILEPGTEVILPAPIYPGYEPIIRLCGAKPVFIDT-RSTGFRLTAEALENAI---TEKTRCVVLPYPS 171 (387)
T ss_pred HHHHHHH---HHHhCCCCCEEEEcCCCccchHHHHHHcCCEEEEeec-CcccCCCCHHHHHHhc---CcCceEEEEeCCC
Confidence 9999985 4445667999999999999999999999999999998 5555666778888776 4567899999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEE
Q psy14428 321 NPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVL 400 (583)
Q Consensus 321 NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~ 400 (583)
||||.+++.+++++|+++|++++++||+||+|.++.+++ +..++.++.+..+++|+++||||+||+||+|+||+++
T Consensus 172 NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~---~~~~~~~~~~~~~~vi~~~s~SK~~~~pGlRiG~i~~- 247 (387)
T PRK07683 172 NPTGVTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQ---PHTSIAHFPEMREKTIVINGLSKSHSMTGWRIGFLFA- 247 (387)
T ss_pred CCCCcCCCHHHHHHHHHHHHHcCeEEEEecccccceeCC---CcCChhhccCCcCCeEEEeeccccccCccceeEEEEc-
Confidence 999999999999999999999999999999999998865 2334555434457899999999999999999999999
Q ss_pred cCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHhcC
Q psy14428 401 TPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEILS 480 (583)
Q Consensus 401 ~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~l~ 480 (583)
+ +++++++.+.......+++.+.|.++..++.++.
T Consensus 248 -~-----~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~--------------------------------------- 282 (387)
T PRK07683 248 -P-----SYLAKHILKVHQYNVTCASSISQYAALEALTAGK--------------------------------------- 282 (387)
T ss_pred -C-----HHHHHHHHHHHHhccCCCChHHHHHHHHHHhCCh---------------------------------------
Confidence 7 5899999987766667788899999988886532
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCCh
Q psy14428 481 DPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSA 536 (583)
Q Consensus 481 ~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~ 536 (583)
.+++++++++.++|+.+.+.|.+.+ +.+..+++|+|.|..++.
T Consensus 283 ---------~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~ 325 (387)
T PRK07683 283 ---------DDAKMMRHQYKKRRDYVYNRLISMG----LDVEKPTGAFYLFPSIGH 325 (387)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHcC----CcccCCCeeEEEEEeccc
Confidence 1244556667788888888887753 556678999999987653
|
|
| >TIGR03538 DapC_gpp succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-41 Score=356.00 Aligned_cols=297 Identities=15% Similarity=0.064 Sum_probs=241.0
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCC--CCCC-CeEEEec
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPA--FKDN-RLAIVQG 237 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~--~~~~-~I~i~~t 237 (583)
.+.+.++|+.|+++.. +++.+.+++.+.... ...|+++.|.++||+++|+|+.+.++++ ++++ +|++ |
T Consensus 26 ~~~~~i~l~~~~p~~~-----~~~~~~~a~~~~~~~--~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~~~i~i--t 96 (393)
T TIGR03538 26 ASKPPIALSIGEPKHP-----TPAFVLEALRENLHG--LSTYPTTKGLPELRQAIARWLERRFDLPTGVDPERHVLP--V 96 (393)
T ss_pred cCCCeEEecCCCCCCC-----CCHHHHHHHHHHhhc--cCCCCCCCCCHHHHHHHHHHHHHhhCCcccCCCCceEEE--C
Confidence 4578899999998632 467888888876542 5789999999999999999999888876 7885 8999 9
Q ss_pred CCchhHHHHHHHHHHHhCCCCCE--EEEcCCCChhhHHHHhhcCCeEEEEecccCC-CCCCChhhHHHHHHcCCCCcEEE
Q psy14428 238 ISGSGSLRVGTAFLERFYPGVKT--VYFPTPTWNGHVRFCTDSRLNVGAYRYFDNK-TNGLDFAGMMEDIKAMPERSILF 314 (583)
Q Consensus 238 ~G~~~al~l~~~~l~~~~~~gd~--Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~-~~g~d~~~l~~~l~~~~~~~~~i 314 (583)
+|+++++.++ +..++++||+ |++++|+|+.|...++..|++++.+|+ +++ ++.+|++.+++++ .++++++
T Consensus 97 ~Ga~~al~~~---~~~l~~~gd~~~vlv~~P~y~~~~~~~~~~g~~~~~v~~-~~~~~~~~d~~~l~~~~---~~~~k~i 169 (393)
T TIGR03538 97 NGTREALFAF---AQAVINPGQAPLVVMPNPFYQIYEGAALLAGAEPYFLNC-TAENGFLPDFDAVPESV---WRRCQLL 169 (393)
T ss_pred CCcHHHHHHH---HHHHcCCCCcceEEecCCCCcchHHHHHhcCCeEEEeec-cccCCCCCCHHHHHHHH---hhcceEE
Confidence 9999999985 4556677986 999999999999999999999999999 433 4677888898877 3467888
Q ss_pred EeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHH-HHHHH----HhcCcEEEEecCcccccc
Q psy14428 315 LQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFS-LRYFA----KEVGQLCLAQSFSKNMGL 389 (583)
Q Consensus 315 ~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~-~~~~~----~~~~~vi~i~S~SK~~~l 389 (583)
+++|||||||.+++.+++++|+++|++++++||+||+|.++.+++. ....+ +..+. +..+++|+++||||.|++
T Consensus 170 ~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~-~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~~ 248 (393)
T TIGR03538 170 FVCSPGNPTGAVLSLDTLKKLIELADQYGFIIASDECYSELYFDEG-NPPAGLLQAAAQLGRDDFRRCLVFHSLSKRSNL 248 (393)
T ss_pred EEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEECcchhhcccCCC-CCCcCHHHhcccccccccccEEEEecchhhcCC
Confidence 8999999999999999999999999999999999999999988641 11222 22211 134689999999999999
Q ss_pred cCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCcc
Q psy14428 390 YGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPI 469 (583)
Q Consensus 390 ~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~ 469 (583)
||+|+||+++ | +++++++.+.......+++.+.|.++...+.+.
T Consensus 249 ~GlRvG~~i~--~-----~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~----------------------------- 292 (393)
T TIGR03538 249 PGLRSGFVAG--D-----AEILKAFLRYRTYHGCAMPIPTQLASIAAWNDE----------------------------- 292 (393)
T ss_pred cccceEEEec--C-----HHHHHHHHHHHHhhccCcCHHHHHHHHHHhcCh-----------------------------
Confidence 9999999999 7 579999988877666778889998877666431
Q ss_pred chhhHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCC
Q psy14428 470 HGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLS 535 (583)
Q Consensus 470 ~g~~i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~ 535 (583)
+++++.++.++++|+.+.+.|++.. .+..+++|+|.|..++
T Consensus 293 --------------------~~~~~~~~~~~~~~~~~~~~L~~~~-----~~~~p~gg~f~~~~~~ 333 (393)
T TIGR03538 293 --------------------QHVRENRALYREKFAAVLEILGQVL-----DLELPDAGFYLWPKVP 333 (393)
T ss_pred --------------------HHHHHHHHHHHHHHHHHHHHHHhhC-----cccCCCeeEEEEEECC
Confidence 1245556667788888888887642 2457899999999887
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK05839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-41 Score=354.47 Aligned_cols=298 Identities=16% Similarity=0.129 Sum_probs=227.1
Q ss_pred hhccccccCCCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCC
Q psy14428 152 QQLKGFNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNR 231 (583)
Q Consensus 152 ~l~~~~~~~~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~ 231 (583)
.+...++.....+.++|+.|+|+.+ +++.+.+++.+... ....|+++.|.++||+++|+++++++|+.+++++
T Consensus 13 ~~~~~~~~~~~~~~i~l~~~~p~~~-----~~~~~~~a~~~~~~--~~~~Y~~~~G~~~lr~aia~~l~~~~g~~~~~~~ 85 (374)
T PRK05839 13 ELLKEITPNKEYKGLDLTIGEPQFE-----TPKFIQDALKNNAH--LLNKYPKSAGEESLREAQRGFFKRRFKIELKENE 85 (374)
T ss_pred HHHHHhhhcCCCCeEEcCCCCCCCC-----CCHHHHHHHHHHhh--ccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCcce
Confidence 4444333223458899999998632 34777777766543 2678999999999999999999988899999999
Q ss_pred eEEEecCCchhHHHHHHHHHHHh-CCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCC-CCCCChhhHHHHHHcCCC
Q psy14428 232 LAIVQGISGSGSLRVGTAFLERF-YPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNK-TNGLDFAGMMEDIKAMPE 309 (583)
Q Consensus 232 I~i~~t~G~~~al~l~~~~l~~~-~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~-~~g~d~~~l~~~l~~~~~ 309 (583)
|++ |+|+++++.++..+ .+ .++||.|++++|+|+.|...++..|++++++++ +++ ++.+|+.. ..+ +
T Consensus 86 I~i--t~G~~~al~~~~~~--~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~v~~v~~-~~~~~~~~d~~~--~~~----~ 154 (374)
T PRK05839 86 LIP--TFGTREVLFNFPQF--VLFDKQNPTIAYPNPFYQIYEGAAIASRAKVLLMPL-TKENDFTPSLNE--KEL----Q 154 (374)
T ss_pred EEE--ecCcHHHHHHHHHH--HhcCCCCCEEEECCCCchhhHHHHHhcCCEEEEeec-ccccCCcCCcch--hhh----c
Confidence 999 99999999875222 22 246999999999999999999999999999999 543 34444332 222 3
Q ss_pred CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHH-----HhcCcEEEEecCc
Q psy14428 310 RSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFA-----KEVGQLCLAQSFS 384 (583)
Q Consensus 310 ~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~-----~~~~~vi~i~S~S 384 (583)
+++++++||||||||.+++.+++++|+++|+++|++||+||+|.+|.+++ +.+++.... +..+++|+++|||
T Consensus 155 ~~k~v~i~nP~NPTG~~~s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~~---~~~s~~~~~~~~~~~~~~~vi~~~SfS 231 (374)
T PRK05839 155 EVDLVILNSPNNPTGRTLSLEELIEWVKLALKHDFILINDECYSEIYENT---PPPSLLEASILVGNESFKNVLVINSIS 231 (374)
T ss_pred cccEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCCEEEeccchhhcccCC---CCCCHhhhhcccCccccCcEEEEeccc
Confidence 57888999999999999999999999999999999999999999987653 233333221 1347999999999
Q ss_pred ccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhcc
Q psy14428 385 KNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFY 464 (583)
Q Consensus 385 K~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~ 464 (583)
|+|++||+|+||+++ + +++++++.+.+.....+++.+.|.++...+.+.. ++++.+..++++++.+...+
T Consensus 232 K~~~~~GlRiG~ii~--~-----~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~l 301 (374)
T PRK05839 232 KRSSAPGLRSGFIAG--D-----ASILKKYKAYRTYLGCASPLPLQKAAAVAWLDDE---HAEFFRNIYAKNLKLAREIL 301 (374)
T ss_pred cccCCccceeEEEec--C-----HHHHHHHHHHHhhcCCCCChHHHHHHHHHhccch---HHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999 7 5899999888776677889999999987776532 33333333333333333222
Q ss_pred C-CCccchhhHHHHhcC
Q psy14428 465 S-NPPIHGARIVTEILS 480 (583)
Q Consensus 465 ~-~~p~~g~~i~~~~l~ 480 (583)
. ..|.+|.|+|+++..
T Consensus 302 ~~~~p~gg~fi~~~~~~ 318 (374)
T PRK05839 302 GITIPPATFYVWLPVDN 318 (374)
T ss_pred CCCCCCeeEEEEEeCCC
Confidence 2 278899999988753
|
|
| >PTZ00433 tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-41 Score=357.36 Aligned_cols=311 Identities=14% Similarity=0.138 Sum_probs=249.2
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCC------CCCCCCCCeEE
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGED------FPAFKDNRLAI 234 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~------g~~~~~~~I~i 234 (583)
..++.|+|+.|.|+.+ ....+++.+.+++.+.+......+|+++.|.++||++||+|+++++ +..+++++|++
T Consensus 31 ~~~~~i~l~~g~p~~~-~~~~p~~~~~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~~~~~~~~~~~~~~~i~i 109 (412)
T PTZ00433 31 SPKSIIKLSVGDPTLD-GNLLTPAIQTKALVEAVDSQECNGYPPTVGSPEAREAVATYWRNSFVHKESLKSTIKKDNVVL 109 (412)
T ss_pred CCCCeeecCCcCCCCc-CCCCCCHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHHHHHHhhccccccccCCCChhhEEE
Confidence 5678899999998632 1123568888888887765445789999999999999999998653 57789999999
Q ss_pred EecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEE
Q psy14428 235 VQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILF 314 (583)
Q Consensus 235 ~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i 314 (583)
|+|+++++.++ +..++.+||+|++++|+|..+...++..|++++.+|+..++++++|++.+++.+ .++++++
T Consensus 110 --t~G~~~al~~~---~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~---~~~~~~i 181 (412)
T PTZ00433 110 --CSGVSHAILMA---LTALCDEGDNILVPAPGFPHYETVCKAYGIEMRFYNCRPEKDWEADLDEIRRLV---DDRTKAL 181 (412)
T ss_pred --eCChHHHHHHH---HHHhcCCCCEEEEccCCcccHHHHHHHcCCEEEEEecCccccCcCCHHHHHHHh---ccCceEE
Confidence 99999999985 445667799999999999999999999999999999832335789999998877 4568889
Q ss_pred EeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccc
Q psy14428 315 LQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERV 394 (583)
Q Consensus 315 ~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRi 394 (583)
+++|||||||.+++.+++++|+++|+++|++||+||+|.+|.+++ ...+++..+. ...++|+++||||+||+||+|+
T Consensus 182 ~~~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~--~~~~~~~~~~-~~~~~i~~~SfSK~~~~pGlRl 258 (412)
T PTZ00433 182 IMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNG--ATFTSVADFD-TTVPRVILGGTAKNLVVPGWRL 258 (412)
T ss_pred EEeCCCCCCCcccCHHHHHHHHHHHHHcCCeEEEeccccccccCC--CCccchhhcc-CCCceEEEccchhhcCCCCeeE
Confidence 999999999999999999999999999999999999999999875 2334555542 2346899999999999999999
Q ss_pred eEEEEEcCCch-hHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhh
Q psy14428 395 GTFSVLTPTSD-ETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGAR 473 (583)
Q Consensus 395 G~lv~~~p~~~-~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~ 473 (583)
||+++ +++. ..+++++.+.+... ...+++.+.|.+++.++.+. .
T Consensus 259 G~~i~--~~p~~~~~~~~~~~~~~~~-~~~~~~~~~q~a~~~~l~~~-~------------------------------- 303 (412)
T PTZ00433 259 GWLLL--VDPHGNGGDFLDGMKRLGM-LVCGPCSVVQAALGEALLNT-P------------------------------- 303 (412)
T ss_pred EEEEE--eCCcccHHHHHHHHHHHhh-ccCCCChHHHHHHHHHHhcC-c-------------------------------
Confidence 99997 3321 01357888877543 34578999999998888652 0
Q ss_pred HHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCCh
Q psy14428 474 IVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSA 536 (583)
Q Consensus 474 i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~ 536 (583)
..+++++++++.++|+.+.+.|++.. .+.+..+++|+|.|..++.
T Consensus 304 ---------------~~~~~~~~~~~~~~r~~l~~~L~~~~---~~~~~~p~gg~f~~~~l~~ 348 (412)
T PTZ00433 304 ---------------QEHLEQIVAKLEEGAMVLYNHIGECI---GLSPTMPRGSMFLMSRLDL 348 (412)
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHHhcCC---CCcccCCCeeEEEEEEech
Confidence 11245566677888999999998642 2556789999999988764
|
|
| >PRK07590 L,L-diaminopimelate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-41 Score=357.68 Aligned_cols=295 Identities=15% Similarity=0.136 Sum_probs=231.6
Q ss_pred CCCccccCCccccCCCCCCCCChHHHHHHHHHhcc----CCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEec
Q psy14428 162 HPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEK----NLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQG 237 (583)
Q Consensus 162 ~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~----~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t 237 (583)
.++.++|+.|+++.. +++.+.+++.+...+ ....+|++..|.++||++||+|+.+.+|+.+++++|++ |
T Consensus 33 ~~~~i~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~i--t 105 (409)
T PRK07590 33 EAKIIRLGIGDVTQP-----LPPAVIEAMHKAVDEMGTAETFRGYGPEQGYDFLREKIAENDYQARGCDISADEIFI--S 105 (409)
T ss_pred CCceEEecCcCCCCC-----CCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHHhcCCcCChhhEEE--C
Confidence 567899999998632 456777777766643 13568999999999999999999888899999999999 9
Q ss_pred CCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCe-----------EEEEecccCCCCCCChhhHHHHHHc
Q psy14428 238 ISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLN-----------VGAYRYFDNKTNGLDFAGMMEDIKA 306 (583)
Q Consensus 238 ~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~-----------~~~v~~~d~~~~g~d~~~l~~~l~~ 306 (583)
+|+++++.++ +. ++.+||+|++++|+|+.|...++..|++ ++.+|+ +++ .++.++..
T Consensus 106 ~Ga~~al~~l---~~-~~~~gd~V~v~~P~Y~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~-~~~-~~~~~d~~------ 173 (409)
T PRK07590 106 DGAKCDTGNI---LD-IFGPDNTIAVTDPVYPVYVDTNVMAGRTGEANEDGRYSGIVYLPC-TAE-NNFVPELP------ 173 (409)
T ss_pred CCHHHHHHHH---HH-hcCCCCEEEEeCCCCcchHHHHHHcCCcccccccccccceeEeec-ccc-cCCcccCc------
Confidence 9999999874 33 3457999999999999999999999997 899998 543 23332211
Q ss_pred CCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCccc
Q psy14428 307 MPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKN 386 (583)
Q Consensus 307 ~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~ 386 (583)
.++++++++||||||||.++|.+++++|+++|++++++||+||+|.+|.+++ ..+.++.++....++||+++||||+
T Consensus 174 -~~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~--~~~~~~~~~~~~~~~vi~~~SfSK~ 250 (409)
T PRK07590 174 -EEKVDIIYLCFPNNPTGTVLTKEQLKAWVDYAKENGSLILFDAAYEAFISDP--SLPHSIYEIEGARECAIEFRSFSKT 250 (409)
T ss_pred -ccCceEEEEeCCCCCcCCcCCHHHHHHHHHHHHHcCeEEEEEccchhhccCC--CCCcchhhCCCcccceEEEecCccc
Confidence 2567888899999999999999999999999999999999999999998865 2233455543223579999999999
Q ss_pred ccccCccceEEEEEcCCchhHHHHHHHH------------HHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHH
Q psy14428 387 MGLYGERVGTFSVLTPTSDETERIMSQL------------KILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMS 454 (583)
Q Consensus 387 ~~l~GlRiG~lv~~~p~~~~~~~li~~l------------~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~ 454 (583)
||+||+|+||+++ | +++++.+ .........++|.+.|.++..++++..
T Consensus 251 ~~~pGlRiG~~i~--~-----~~li~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~------------- 310 (409)
T PRK07590 251 AGFTGTRCAYTVV--P-----KELKGKTSDGEGVSLNSLWNRRQSTKFNGVSYIVQRAAEAVYSPEG------------- 310 (409)
T ss_pred cCCcCceeEEEEc--C-----HHHhhhccccchhhhHHHHHHHHhhcccCcCHHHHHHHHHHhcCCc-------------
Confidence 9999999999999 7 4677632 222223345688899999888876421
Q ss_pred HHHHHHhhccCCCccchhhHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCC
Q psy14428 455 QLKILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGL 534 (583)
Q Consensus 455 ~l~~~~r~~~~~~p~~g~~i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l 534 (583)
.++++++++.+.++|+.+.+.|++.+ +.+..+++|+|.|..+
T Consensus 311 ----------------------------------~~~~~~~~~~~~~~r~~l~~~L~~~~----~~~~~~~g~~f~wi~~ 352 (409)
T PRK07590 311 ----------------------------------KAQIKELIDYYMENAKIIREGLESAG----FEVYGGVNAPYIWVKT 352 (409)
T ss_pred ----------------------------------HHHHHHHHHHHHHHHHHHHHHHHhcC----CceecCCcceEEEEEC
Confidence 12355667777888999999998863 4556678999999988
Q ss_pred Ch
Q psy14428 535 SA 536 (583)
Q Consensus 535 ~~ 536 (583)
+.
T Consensus 353 ~~ 354 (409)
T PRK07590 353 PD 354 (409)
T ss_pred CC
Confidence 64
|
|
| >PRK08637 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-40 Score=348.50 Aligned_cols=313 Identities=20% Similarity=0.242 Sum_probs=241.8
Q ss_pred CCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCC---CCCeEEEecCC
Q psy14428 163 PKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFK---DNRLAIVQGIS 239 (583)
Q Consensus 163 ~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~---~~~I~i~~t~G 239 (583)
.++++.++|...++.+ +.+.+.++++..+.. ....++|+++.|.++||+++++++.+.++ .+. .++|++ |+|
T Consensus 3 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~-~~~~~~~~~I~i--t~G 77 (388)
T PRK08637 3 ATKYNATIGMATEKGG-PMYLSSLQDLLNDLT-PDEIFPYAPPQGIPELRDLWQEKMLRENP-SLSGKKMSLPIV--TNA 77 (388)
T ss_pred ccceecceeeEecCCC-cchHHHHHHHHHhhc-cccccCCCCCCCCHHHHHHHHHHHhccCc-cccccccceeeE--ccc
Confidence 4568888888865543 556677777766643 23468899999999999999999987653 333 368899 999
Q ss_pred chhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHh-hcCCeEEEEecccCCCCCCChhhHHHHHHcC-CCCcEEEEeC
Q psy14428 240 GSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCT-DSRLNVGAYRYFDNKTNGLDFAGMMEDIKAM-PERSILFLQT 317 (583)
Q Consensus 240 ~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~-~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~-~~~~~~i~i~ 317 (583)
+++++.++ +..++++||.|++++|+|+.|...+. ..|++++.+|+ +.+++++|++.+++.++.. .+.++++++|
T Consensus 78 ~~~al~~~---~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~g~~vv~v~~-~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~ 153 (388)
T PRK08637 78 LTHGLSLV---ADLFVDQGDTVLLPDHNWGNYKLTFNTRRGAEIVTYPI-FDEDGGFDTDALKEALQAAYNKGKVIVILN 153 (388)
T ss_pred hHHHHHHH---HHHhcCCCCEEEEcCCCCccHHHHHHHhcCCEEEEecc-cCCCCcCCHHHHHHHHHhhccCCCEEEEEe
Confidence 99999985 55577789999999999999998865 68999999998 4344689999999888522 3567789999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHh-----cCeEEEEeccCCCCCCCCCCCchHHH-HHHHHhcCcE--EEEecCcccccc
Q psy14428 318 SSHNPTGVDLSEDQWRQLAVVVKQ-----RHLYPFFDMAYLGLTSGDFDKDAFSL-RYFAKEVGQL--CLAQSFSKNMGL 389 (583)
Q Consensus 318 ~p~NPTG~~~s~~~~~~l~~~a~~-----~~i~iI~De~Y~~l~~~~~~~~~~~~-~~~~~~~~~v--i~i~S~SK~~~l 389 (583)
|||||||.++|.+++++|+++|++ ++++||+||+|.+|.|++. ..+++ ..+.+..+++ ++++||||.|++
T Consensus 154 ~P~NPTG~~~s~~~~~~l~~~~~~~~~~~~~~~iI~De~Y~~l~~~~~--~~~~~~~~~~~~~~~vi~i~~~s~SK~~~~ 231 (388)
T PRK08637 154 FPNNPTGYTPTEKEATAIVEAIKELADAGTKVVAVVDDAYFGLFYEDS--YKESLFAALANLHSNILAVKLDGATKEEFV 231 (388)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEecccchhcccCCc--cchhhHHHhhcccccceEEEeccccccCCC
Confidence 999999999999999999998875 8999999999999998762 33343 3333445675 456699999999
Q ss_pred cCccceEEEEEcCC---chhHHHHHHHHHHH----HhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhh
Q psy14428 390 YGERVGTFSVLTPT---SDETERIMSQLKIL----IRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRG 462 (583)
Q Consensus 390 ~GlRiG~lv~~~p~---~~~~~~li~~l~~~----~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~ 462 (583)
||+|+||+++ ++ .. +++++++.+. .+....++|.+.|.++..+++++.
T Consensus 232 pGlRlG~~~~--~~~~~~~--~~l~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~--------------------- 286 (388)
T PRK08637 232 WGFRVGFITF--GTKAGSS--QTVKEALEKKVKGLIRSNISNGPHPSQSAVLRALNSPE--------------------- 286 (388)
T ss_pred cccceEEEEE--ccccCCc--HHHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHhCCHH---------------------
Confidence 9999999998 52 11 3677777642 223456889999999999998743
Q ss_pred ccCCCccchhhHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCCh
Q psy14428 463 FYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSA 536 (583)
Q Consensus 463 ~~~~~p~~g~~i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~ 536 (583)
|.+++++++..+.++++.+.+.|++.+.++.+.+..+++|+|.|..++.
T Consensus 287 -------------------------~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~l~~ 335 (388)
T PRK08637 287 -------------------------FDKEKQEKFQILKERYEKTKEVLYDGKYDDAWQAYPFNSGYFMCLKLKG 335 (388)
T ss_pred -------------------------HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccccceEEEEecCCh
Confidence 3344555666677888888888877644555777888999999998863
|
|
| >PRK08912 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=353.24 Aligned_cols=299 Identities=15% Similarity=0.136 Sum_probs=243.5
Q ss_pred CCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCC-CeEEEecCCc
Q psy14428 162 HPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDN-RLAIVQGISG 240 (583)
Q Consensus 162 ~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~-~I~i~~t~G~ 240 (583)
.++.++|+.|.|+.. .++.+.+++.+...+. ..+|++..|.++||+++++++++.+|+.++++ +|++ |+|+
T Consensus 25 ~~~~i~l~~g~p~~~-----~p~~~~~~~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~i~~--t~G~ 96 (387)
T PRK08912 25 EHGAINLGQGFPDDP-----GPEDVRRAAADALLDG-SNQYPPMMGLPELRQAVAAHYARFQGLDLDPETEVMV--TSGA 96 (387)
T ss_pred hCCeEEccCCCCCCC-----CCHHHHHHHHHHHhcC-CCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcccEEE--eCCc
Confidence 357899999998632 2345555555544332 56799999999999999999998889999998 9999 9999
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCC
Q psy14428 241 SGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSH 320 (583)
Q Consensus 241 ~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~ 320 (583)
++++.++ +..++.+||+|++++|+|+.+...++..|++++.+++ +++++++|++.+++.+ .+++++++++|||
T Consensus 97 ~~al~~~---~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~l~~~~---~~~~~~v~l~~p~ 169 (387)
T PRK08912 97 TEALAAA---LLALVEPGDEVVLFQPLYDAYLPLIRRAGGVPRLVRL-EPPHWRLPRAALAAAF---SPRTKAVLLNNPL 169 (387)
T ss_pred HHHHHHH---HHHhcCCCCEEEEeCCCchhhHHHHHHcCCEEEEEec-CcccCcCCHHHHHHHh---CccceEEEEeCCC
Confidence 9999875 4455667999999999999999999999999999998 5556889999998877 4577889999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEE
Q psy14428 321 NPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVL 400 (583)
Q Consensus 321 NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~ 400 (583)
||||.+++.+++++|+++|++++++||+||+|.++.+++ ....++.++.+..+++|+++||||.||+||+|+||+++
T Consensus 170 NPtG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~--~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~- 246 (387)
T PRK08912 170 NPAGKVFPREELALLAEFCQRHDAVAICDEVWEHVVFDG--RRHIPLMTLPGMRERTVKIGSAGKIFSLTGWKVGFVCA- 246 (387)
T ss_pred CCcCcccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCC--CCCcChhhCCCccCceEEEeechhhccCcCceeEEEec-
Confidence 999999999999999999999999999999999999875 23334444323347899999999999999999999999
Q ss_pred cCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHhcC
Q psy14428 401 TPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEILS 480 (583)
Q Consensus 401 ~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~l~ 480 (583)
+ +++++.+.+.......+++...|.++...+.+.
T Consensus 247 -~-----~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~---------------------------------------- 280 (387)
T PRK08912 247 -A-----PPLLRVLAKAHQFLTFTTPPNLQAAVAYGLGKP---------------------------------------- 280 (387)
T ss_pred -C-----HHHHHHHHHHHhhccccCChHHHHHHHHHHhCC----------------------------------------
Confidence 7 589999988777666677777788777666421
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCCh
Q psy14428 481 DPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSA 536 (583)
Q Consensus 481 ~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~ 536 (583)
. ++++++++++.++|+.+.+.|++.+ +.+..+++|+|.|..++.
T Consensus 281 -----~---~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~g~~~l~~~l~~ 324 (387)
T PRK08912 281 -----D---DYFEGMRADLARSRDRLAAGLRRIG----FPVLPSQGTYFLTVDLAP 324 (387)
T ss_pred -----H---HHHHHHHHHHHHHHHHHHHHHHhCC----CcccCCCcceEEEecccc
Confidence 0 1234566777889999999998864 456678899999988764
|
|
| >PLN02607 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=356.38 Aligned_cols=306 Identities=15% Similarity=0.211 Sum_probs=239.5
Q ss_pred CCC-CccccCCccccCCCCCCCCChHHHHHHHHHhc----------c-CCCCCCCCCCCCHHHHHHHHHHHhCCCC--CC
Q psy14428 161 PHP-KKMNLGVGAYRGEDGKPYVLPSVKEAERRIYE----------K-NLDHEYANIGGDAKFCKLAAQLAYGEDF--PA 226 (583)
Q Consensus 161 ~~~-~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~----------~-~~~~~Y~~~~G~~~Lr~aia~~~~~~~g--~~ 226 (583)
.+| +.|+|+..+.. ...+.+.+.+++... . .....|.+..|.++||+++|+++.+.++ ..
T Consensus 44 ~np~g~i~l~~aeN~------l~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~aiA~~l~~~~~~~~~ 117 (447)
T PLN02607 44 HNPSGVIQMGLAENQ------VSFDLLEEYLKQHPEASSWGGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGKAR 117 (447)
T ss_pred cCCCceEEEechhhh------hhHHHHHHHHHhCchhhccccccccccchhhccCCCcchHHHHHHHHHHHHHhcCCCCC
Confidence 444 46888887752 123444444443321 0 1134588899999999999999998766 46
Q ss_pred CCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHh-hcCCeEEEEecccCCCCCCChhhHHHHHH
Q psy14428 227 FKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCT-DSRLNVGAYRYFDNKTNGLDFAGMMEDIK 305 (583)
Q Consensus 227 ~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~-~~G~~~~~v~~~d~~~~g~d~~~l~~~l~ 305 (583)
+++++|++ |+|++++++++ +..+++|||.|++++|+|+.+...+. ..|+++++|++...+++.+|++.+++++.
T Consensus 118 v~p~~Ivi--t~G~t~al~~l---~~~l~~pGD~Vlv~~P~Y~~f~~~~~~~~g~~vv~v~~~~~~~f~~~~~~le~a~~ 192 (447)
T PLN02607 118 FDPDRIVL--TAGATAANELL---TFILADPGDALLVPTPYYPGFDRDLRWRTGVKIVPIHCDSSNNFQVTPQALEAAYQ 192 (447)
T ss_pred cCHHHeEE--cCChHHHHHHH---HHHhCCCCCEEEEcCCCCcchHHHHHhcCCcEEEEEeCCCCCCCcCCHHHHHHHHH
Confidence 89999999 99999999985 44567889999999999999998887 57999999998323346789999998886
Q ss_pred cC---CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHh------cCc
Q psy14428 306 AM---PERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKE------VGQ 376 (583)
Q Consensus 306 ~~---~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~------~~~ 376 (583)
+. ..++++++++|||||||.+++++++++|+++|++++++||+||+|.++.|++ .+..++.++.+. .++
T Consensus 193 ~a~~~~~~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~~f~~--~~f~S~~s~~~~~~~~~~~~~ 270 (447)
T PLN02607 193 EAEAANIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGSVFSA--SEFVSVAEIVEARGYKGVAER 270 (447)
T ss_pred HHHHhCCCeeEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCCEEEEeccccccccCC--CCcccHHHHHhhcCCCCCcCc
Confidence 43 3578899999999999999999999999999999999999999999998875 234555554321 468
Q ss_pred EEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHH
Q psy14428 377 LCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQL 456 (583)
Q Consensus 377 vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l 456 (583)
|++++||||.||+||+|+||+++ ++ +.+++.++... .+.++|.++|.+++.+++++.+.
T Consensus 271 v~vi~s~SK~fg~~GlRvG~ivs--~n----~~l~~~~~~~~--~~~~~s~~~q~~~~~~L~d~~~~------------- 329 (447)
T PLN02607 271 VHIVYSLSKDLGLPGFRVGTIYS--YN----DKVVTTARRMS--SFTLVSSQTQHLLASMLSDEEFT------------- 329 (447)
T ss_pred EEEEEcchhcCCCCcceEEEEEE--cC----HHHHHHHHHHh--hcCCCCHHHHHHHHHHhCCchhH-------------
Confidence 99999999999999999999998 64 46777776543 23467889999999999874321
Q ss_pred HHHHhhccCCCccchhhHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCCh
Q psy14428 457 KILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSA 536 (583)
Q Consensus 457 ~~~~r~~~~~~p~~g~~i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~ 536 (583)
.+.+++.++++.++++.+.+.|++.+. .+..+++|+|+|.+++.
T Consensus 330 --------------------------------~~~l~~~r~~l~~~~~~~~~~L~~~gi----~~~~~~ag~fvw~~L~~ 373 (447)
T PLN02607 330 --------------------------------ENYIRTNRERLRKRYEMIVQGLRRAGI----ECLKGNAGLFCWMNLSP 373 (447)
T ss_pred --------------------------------HHHHHHHHHHHHHHHHHHHHHHHhCCC----CcccCCeeEEEEEEchH
Confidence 123566778888999999999998653 46778999999998864
|
|
| >PRK08175 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=353.45 Aligned_cols=302 Identities=13% Similarity=0.130 Sum_probs=245.6
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCC-CeEEEecCC
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDN-RLAIVQGIS 239 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~-~I~i~~t~G 239 (583)
..+..++|+.|.|+.. +++.+.+++.+...+.....|+++.|.++||+++++|+.+.+|+.++++ +|++ |+|
T Consensus 27 ~~~~~i~l~~g~p~~~-----~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~i~~--t~G 99 (395)
T PRK08175 27 RGEDIIDFSMGNPDGP-----TPPHIVEKLCEVAQRPDTHGYSTSRGIPRLRRAISRWYQDRYDVDIDPESEAIV--TIG 99 (395)
T ss_pred cCCCeEEcCCCCCCCC-----CCHHHHHHHHHHHhCCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEE--ccC
Confidence 4577899999988632 3354555555554444467899999999999999999998889999987 8999 999
Q ss_pred chhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCC
Q psy14428 240 GSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSS 319 (583)
Q Consensus 240 ~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p 319 (583)
+++++.++ +..++++||+|++++|+|+.+...++..|++++.+++ +++ +.+++.+++.++...+++++++++||
T Consensus 100 ~~~~l~~~---~~~~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~-~~~--~~~~~~l~~~l~~~~~~~~~v~i~~p 173 (395)
T PRK08175 100 SKEGLAHL---MLATLDHGDTVLVPNPSYPIHIYGAVIAGAQVRSVPL-VEG--VDFFNELERAIRESYPKPKMMILGFP 173 (395)
T ss_pred cHHHHHHH---HHHhCCCCCEEEEcCCCCcchHHHHHHcCCeEEEEec-ccC--CCcHHHHHHHHhhccCCceEEEEeCC
Confidence 99999985 3456677999999999999999999999999999998 543 33577888777554457889999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEE
Q psy14428 320 HNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSV 399 (583)
Q Consensus 320 ~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~ 399 (583)
|||||.+++.+++++|+++|++++++||+||+|.++.+++ ...+++.++....+++|+++||||+||+||+|+||+++
T Consensus 174 ~NPtG~~~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~--~~~~~~~~~~~~~~~~i~~~S~SK~~g~pGlRiG~~~~ 251 (395)
T PRK08175 174 SNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDG--WKAPSIMQVPGAKDVAVEFFTLSKSYNMAGWRIGFMVG 251 (395)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchHhhccCC--CCCcchhcCCCcccCEEEEeeccccccCcchhheeeeC
Confidence 9999999999999999999999999999999999999865 23344444322246899999999999999999999998
Q ss_pred EcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHhc
Q psy14428 400 LTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEIL 479 (583)
Q Consensus 400 ~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~l 479 (583)
+ +++++++.+.+.....+++.+.|.++..++++.
T Consensus 252 --~-----~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~--------------------------------------- 285 (395)
T PRK08175 252 --N-----PELVSALARIKSYHDYGTFTPLQVAAIAALEGD--------------------------------------- 285 (395)
T ss_pred --C-----HHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCc---------------------------------------
Confidence 6 589999998887777788888888887777531
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCCh
Q psy14428 480 SDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSA 536 (583)
Q Consensus 480 ~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~ 536 (583)
.++++++++++.++|+.+.+.|++.+ +.+..+++|+|.|..++.
T Consensus 286 ---------~~~~~~~~~~~~~~~~~~~~~L~~~~----~~~~~p~~g~~i~i~l~~ 329 (395)
T PRK08175 286 ---------QQCVRDIAEQYKRRRDVLVKGLHEAG----WMVEMPKASMYVWAKIPE 329 (395)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHcC----CcccCCCEEEEEEEECCc
Confidence 12356677788889999999998863 555678899999998875
|
|
| >PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=362.62 Aligned_cols=308 Identities=15% Similarity=0.145 Sum_probs=239.8
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
.+.+.|+|+.|++++ .+.+ +++.+.+++.+.... ..+|++..|.++||++||+|+..+++..+++++|++ |+|+
T Consensus 144 ~g~~~i~l~~G~p~~-~~~~-~p~~~~~~~~~~~~~--~~~Y~~~~G~~~lReaia~~~~~~~~~~~~~~~I~i--t~G~ 217 (517)
T PRK13355 144 AGTHILKLNIGNPAP-FGFR-TPDEVVYDMAQQLTD--TEGYSDSKGLFSARKAIMQYAQLKGLPNVDVDDIYT--GNGV 217 (517)
T ss_pred cCCCeEEecCcCCCc-CCCC-CCHHHHHHHHHHhhc--CCCCCCCcChHHHHHHHHHHHHhcCCCCCChhHEEE--eCcH
Confidence 457899999999953 2222 456666666655543 467999999999999999999887777799999999 9999
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCC-CCCCChhhHHHHHHcCCCCcEEEEeCCC
Q psy14428 241 SGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNK-TNGLDFAGMMEDIKAMPERSILFLQTSS 319 (583)
Q Consensus 241 ~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~-~~g~d~~~l~~~l~~~~~~~~~i~i~~p 319 (583)
++++.++ +..++++||+|++++|+|+.|...++..|++++.+++ +++ ++.+|++.+++.+ .+++++++++||
T Consensus 218 ~eal~~~---~~~l~~~Gd~Vli~~P~y~~y~~~~~~~g~~~v~~~~-~~~~~~~~d~~~l~~~~---~~~~k~i~i~nP 290 (517)
T PRK13355 218 SELINLS---MSALLDDGDEVLIPSPDYPLWTACVNLAGGTAVHYRC-DEQSEWYPDIDDIRSKI---TSRTKAIVIINP 290 (517)
T ss_pred HHHHHHH---HHHhCCCCCEEEEcCCCCcCHHHHHHHCCCEEEEeec-CcccCCCCCHHHHHHhc---CcCceEEEEECC
Confidence 9999985 4456778999999999999999999999999999998 543 5789999998877 567899999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEE
Q psy14428 320 HNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSV 399 (583)
Q Consensus 320 ~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~ 399 (583)
|||||.+++.+++++|+++|++|+++||+||+|.+|.|++ ..+.++.++. ....||+++||||+|++||||+||+++
T Consensus 291 ~NPTG~v~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~--~~~~s~~~~~-~~~~vi~~~S~SK~~~~~G~RiG~~i~ 367 (517)
T PRK13355 291 NNPTGALYPREVLQQIVDIAREHQLIIFSDEIYDRLVMDG--LEHTSIASLA-PDLFCVTFSGLSKSHMIAGYRIGWMIL 367 (517)
T ss_pred CCCCCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhhcCCC--CCcccHHHhC-CCCeEEEEecchhhccCcccceEEEEe
Confidence 9999999999999999999999999999999999999976 2344555542 234588899999999999999999997
Q ss_pred EcCCch-hHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHh
Q psy14428 400 LTPTSD-ETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEI 478 (583)
Q Consensus 400 ~~p~~~-~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~ 478 (583)
+.+. ..+.+++.+... .....+++.++|.++..++++...
T Consensus 368 --~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~a~~~aL~~~~~------------------------------------ 408 (517)
T PRK13355 368 --SGNKRIAKDYIEGLNML-ANMRLCSNVPAQSIVQTALGGHQS------------------------------------ 408 (517)
T ss_pred --eCchhhHHHHHHHHHHH-hcCcCCcChHHHHHHHHHhcCCcc------------------------------------
Confidence 4221 112345555433 345567899999999998864210
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCCh
Q psy14428 479 LSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSA 536 (583)
Q Consensus 479 l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~ 536 (583)
+.+++++.+ ++.++|+.+.+.|++. || +.+..|+++||.|+.++.
T Consensus 409 ---------~~~~~~~~~-~~~~~r~~l~~~L~~~--~g-~~~~~p~g~fy~~~~l~~ 453 (517)
T PRK13355 409 ---------VKDYLVPGG-RVYEQRELVYNALNAI--PG-ISAVKPKAAFYIFPKIDV 453 (517)
T ss_pred ---------HHHHHHHHH-HHHHHHHHHHHHHhcC--CC-cccCCCCeeeEEEeecCc
Confidence 011122222 2235678888888875 33 667889999999987753
|
|
| >PRK07337 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=353.63 Aligned_cols=297 Identities=17% Similarity=0.205 Sum_probs=246.3
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
.+++.++|+.|.++.. +++.+.+++.+..... ...|++..|.++||+++|+|+++.+|+.+++++|++ |+|+
T Consensus 28 ~~~~~i~l~~~~~~~~-----~~~~~~~~~~~~~~~~-~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~--t~G~ 99 (388)
T PRK07337 28 AGRDIIHMGIGEPDFT-----APEPVVEAAARALRRG-VTQYTSALGLAPLREAIAAWYARRFGLDVAPERIVV--TAGA 99 (388)
T ss_pred cCCCEEEeCCcCCCCC-----CCHHHHHHHHHHHhcC-CCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHhEEE--ecCc
Confidence 4567899999998532 4567788877766543 567999999999999999999988899999999999 9999
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccC-CCCCCChhhHHHHHHcCCCCcEEEEeCCC
Q psy14428 241 SGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDN-KTNGLDFAGMMEDIKAMPERSILFLQTSS 319 (583)
Q Consensus 241 ~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~-~~~g~d~~~l~~~l~~~~~~~~~i~i~~p 319 (583)
++++.++ +..++.+||+|++++|+|+.+...++..|++++.+|+ ++ +++++|++.+++.+ .+++++++++||
T Consensus 100 ~~al~~~---~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~l~~~~---~~~~~~v~l~~p 172 (388)
T PRK07337 100 SAALLLA---CLALVERGDEVLMPDPSYPCNRHFVAAAEGRPVLVPS-GPAERFQLTAADVEAAW---GERTRGVLLASP 172 (388)
T ss_pred HHHHHHH---HHHhcCCCCEEEEeCCCchhhHHHHHHcCCEEEEeec-CCccCCcCCHHHHHhhc---CccceEEEEECC
Confidence 9999985 4445677999999999999999999999999999999 54 35789999998877 567889999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEE
Q psy14428 320 HNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSV 399 (583)
Q Consensus 320 ~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~ 399 (583)
|||||.+++.+++++|+++|++++++||+||+|.++.+++ ...+... ..+++|+++||||.||+||+|+||+++
T Consensus 173 ~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~---~~~~~~~---~~~~vi~~~S~SK~~~~~G~RiG~~~~ 246 (388)
T PRK07337 173 SNPTGTSIAPDELRRIVEAVRARGGFTIVDEIYQGLSYDA---APVSALS---LGDDVITINSFSKYFNMTGWRLGWLVV 246 (388)
T ss_pred CCCCCcCcCHHHHHHHHHHHHHCCCEEEEeccccccccCC---CCcChhh---ccCCEEEEEechhhcCCchhheeeeec
Confidence 9999999999999999999999999999999999998865 1223222 346899999999999999999999999
Q ss_pred EcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHhc
Q psy14428 400 LTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEIL 479 (583)
Q Consensus 400 ~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~l 479 (583)
+ +++++++.+.......+++.++|.++..++.++.+.
T Consensus 247 --~-----~~l~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~------------------------------------ 283 (388)
T PRK07337 247 --P-----EALVGTFEKLAQNLFICASALAQHAALACFEPDTLA------------------------------------ 283 (388)
T ss_pred --C-----HHHHHHHHHHHHHhccCCChHHHHHHHHHhccCchH------------------------------------
Confidence 7 579999998887777789999999998888653211
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc-ccccccceeecCCCh
Q psy14428 480 SDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDH-ITNQKGMFCYTGLSA 536 (583)
Q Consensus 480 ~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~-~~~~~g~f~~~~l~~ 536 (583)
.++++++.+.++|+.+.+.|++.+ +.. ..|++|+|.|..++.
T Consensus 284 -----------~~~~~~~~~~~~r~~~~~~L~~~~----~~~~~~p~~g~f~~~~~~~ 326 (388)
T PRK07337 284 -----------IYERRRAEFKRRRDFIVPALESLG----FKVPVMPDGAFYVYADCRG 326 (388)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHhcC----CccccCCCeeEEEEEeccc
Confidence 124456667788888988888854 222 468899999998763
|
|
| >PRK05957 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-40 Score=348.96 Aligned_cols=348 Identities=16% Similarity=0.157 Sum_probs=262.3
Q ss_pred CCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCC-CCCeEEEecCCch
Q psy14428 163 PKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFK-DNRLAIVQGISGS 241 (583)
Q Consensus 163 ~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~-~~~I~i~~t~G~~ 241 (583)
++.++|+.|.++.. +++.+.+++.+.........|.+..|.++||+++++++.+..|+.++ +++|++ |+|++
T Consensus 27 ~~~~~l~~g~~~~~-----~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~~~~~~l~~~~g~~~~~~~~i~~--t~G~~ 99 (389)
T PRK05957 27 PGTISLGQGVVSYP-----PPPEAIEALNNFLANPENHKYQAVQGIPPLLEAITQKLQQDNGIELNNEQAIVV--TAGSN 99 (389)
T ss_pred CCeEEccCCCCCCC-----CCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEE--eCChH
Confidence 56799999998622 56788888887765443568999999999999999999888888877 789999 99999
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCC
Q psy14428 242 GSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHN 321 (583)
Q Consensus 242 ~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~N 321 (583)
+++.++ +..++.+||+|++++|+|..+...++..|++++.+|+ + +++++|++.+++.+ .+++++++++||||
T Consensus 100 ~~l~~~---~~~~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~-~-~~~~~d~~~l~~~i---~~~~klv~~~~p~N 171 (389)
T PRK05957 100 MAFMNA---ILAITDPGDEIILNTPYYFNHEMAITMAGCQPILVPT-D-DNYQLQPEAIEQAI---TPKTRAIVTISPNN 171 (389)
T ss_pred HHHHHH---HHHhcCCCCEEEEeCCCCcCHHHHHHhcCCEEEEeec-C-CCCCcCHHHHHHhc---CcCceEEEEeCCCC
Confidence 999875 3445677999999999999999999999999999998 4 34789999999887 45788999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEc
Q psy14428 322 PTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLT 401 (583)
Q Consensus 322 PTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~ 401 (583)
|||.+++.+++++|+++|+++|++||+||+|.+|.+++. +..+...+.+..+++|+++||||.||+||+|+||+++
T Consensus 172 PtG~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~--~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~-- 247 (389)
T PRK05957 172 PTGVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGV--KHFSPGSIPGSGNHTISLYSLSKAYGFASWRIGYMVI-- 247 (389)
T ss_pred CCCcCcCHHHHHHHHHHHHHcCcEEEEeccchhccCCCC--CccChhhCCCccCcEEEEecchhhccCccceeEEEec--
Confidence 999999999999999999999999999999999998752 2223334334557899999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCCh--hhhhhhhhHHHHHHHHHHHHhh--c-cC-CCccchhhHH
Q psy14428 402 PTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDP--KLKAQCDETERIMSQLKILIRG--F-YS-NPPIHGARIV 475 (583)
Q Consensus 402 p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~--~~~~~~~~~~~~~~~l~~~~r~--~-~~-~~p~~g~~i~ 475 (583)
+ +++++++.+.+.....+++.+.|.++..+++++ .++++.+..++.++.+.+.++. . .. .+|.+|.|+|
T Consensus 248 ~-----~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~gg~~~~ 322 (389)
T PRK05957 248 P-----IHLLEAIKKIQDTILICPPVVSQYAALGALQVGKSYCQQHLPEIAQVRQILLKSLGQLQDRCTLHPANGAFYCF 322 (389)
T ss_pred C-----HHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCeeEEEE
Confidence 7 589999999887777888999999999999763 4566555444333333333332 1 23 3566778888
Q ss_pred HHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCCC-cccccccccceeecCCChhhhhhhhhhhhHHHH
Q psy14428 476 TEILSDPKLKAQWFEECKGMSNRISSIREELKSKILD---KGSKKN-WDHITNQKGMFCYTGLSASQGMSNRISSIREEL 551 (583)
Q Consensus 476 ~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~---~~~pg~-~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~ 551 (583)
.++..+.. ..++..+.+++ ...||+ +........++++...+.+++++ .+.++.+.+
T Consensus 323 ~~~~~~~~------------------~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~~l~~-~~~~l~~~~ 383 (389)
T PRK05957 323 LKVNTDLN------------------DFELVKQLIREYRVAVIPGTTFGMKNGCYLRIAYGALQKATAKE-GIERLVQGL 383 (389)
T ss_pred EeCCCCCC------------------hHHHHHHHHHHCCEEEccchhhCCCCCCEEEEEEecCCHHHHHH-HHHHHHHHH
Confidence 87753211 01111111222 234665 32222234677887777776655 555555555
Q ss_pred HH
Q psy14428 552 KS 553 (583)
Q Consensus 552 ~~ 553 (583)
+.
T Consensus 384 ~~ 385 (389)
T PRK05957 384 KT 385 (389)
T ss_pred Hh
Confidence 43
|
|
| >TIGR03537 DapC succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-40 Score=344.88 Aligned_cols=292 Identities=14% Similarity=0.122 Sum_probs=237.2
Q ss_pred ccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCC-CeEEEecCCchhH
Q psy14428 165 KMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDN-RLAIVQGISGSGS 243 (583)
Q Consensus 165 ~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~-~I~i~~t~G~~~a 243 (583)
.++|+.|.|+.. +++.+.+++++.... ..+|+++.|.++||+++++|+.+.+|+.++++ +|++ |+|++++
T Consensus 2 ~~~~~~g~p~~~-----~~~~~~~~~~~~~~~--~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~Iii--t~Gs~~a 72 (350)
T TIGR03537 2 LFDFGTGDPKEP-----TPPFIRKALIDAVPE--VSQYPSALGTKALREAISGWFERRFGVKLDPDAQVLP--SAGSKEA 72 (350)
T ss_pred eEeccCCCCCCC-----CCHHHHHHHHHHHhc--cCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEE--cCChHHH
Confidence 478888887522 467888888876542 67799999999999999999998889999998 9999 9999999
Q ss_pred HHHHHHHHHHhCCCC---CEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCC
Q psy14428 244 LRVGTAFLERFYPGV---KTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSH 320 (583)
Q Consensus 244 l~l~~~~l~~~~~~g---d~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~ 320 (583)
+.++ +..++.+| |+|++++|+|+.|...++..|++++.+++..++++.+|++.+++++ .++++++++++||
T Consensus 73 i~~~---~~~~~~~g~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~---~~~~~~i~i~~p~ 146 (350)
T TIGR03537 73 IFHF---PLVFIDPEEDRRRVIFGTPGYPVYERGALFAGGEPTAVKLKKEDGFLLRLEKVEKSI---LEETKIVWINYPH 146 (350)
T ss_pred HHHH---HHHHcCCCCCCceEEEcCCCCcchHHHHHhcCCEEEEcccCcccCCccCHHHHHHhh---hhccEEEEEeCCC
Confidence 9985 34455556 7999999999999999999999999999932334667999998887 3468899999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEE
Q psy14428 321 NPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVL 400 (583)
Q Consensus 321 NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~ 400 (583)
||||.+++.+++++|+++|++++++||+||+|.++.+++ ...++..+ ..+++|+++||||++|+||+|+||+++
T Consensus 147 NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~---~~~~~~~~--~~~~~i~~~s~SK~~g~~GlRiG~~~~- 220 (350)
T TIGR03537 147 NPTGATAPRSYLKETIAMCREHGIILCSDECYTEIYFGE---PPHSALEV--GIENVLAFHSLSKRSGMTGYRSGFVAG- 220 (350)
T ss_pred CCcCcccCHHHHHHHHHHHHHcCcEEEEeccccccccCC---CCCchhhc--CcCCEEEEeecccccCCccccceeeec-
Confidence 999999999999999999999999999999999988764 23334332 246899999999999999999999998
Q ss_pred cCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHhcC
Q psy14428 401 TPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEILS 480 (583)
Q Consensus 401 ~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~l~ 480 (583)
+ +++++++.........+++.+.|.++...+.+..
T Consensus 221 -~-----~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~--------------------------------------- 255 (350)
T TIGR03537 221 -D-----EKLISFLRKLRANFGVASPDFVQAAAKAAWSDDN--------------------------------------- 255 (350)
T ss_pred -C-----HHHHHHHHHHHHhhccCCCHHHHHHHHHHhCCcH---------------------------------------
Confidence 6 5899999988776666777778888766654311
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCCh
Q psy14428 481 DPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSA 536 (583)
Q Consensus 481 ~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~ 536 (583)
| +++.+.++.++++.+.+.|++.+ +.+..+++|+|.|..++.
T Consensus 256 -------~---~~~~r~~l~~~~~~~~~~l~~~g----~~~~~~~g~~~~~~~~~~ 297 (350)
T TIGR03537 256 -------H---VLERRKIFKRKRDLFIEFFNKVG----LEYLYPDATFYLWVKVPS 297 (350)
T ss_pred -------H---HHHHHHHHHHHHHHHHHHHHHCC----CcccCCCeEEEEEEECCC
Confidence 1 23345566777888888887754 456678899999988764
|
Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. |
| >PRK07309 aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-40 Score=347.64 Aligned_cols=299 Identities=20% Similarity=0.243 Sum_probs=246.3
Q ss_pred CCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCC-CCeEEEecCCch
Q psy14428 163 PKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKD-NRLAIVQGISGS 241 (583)
Q Consensus 163 ~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~-~~I~i~~t~G~~ 241 (583)
++.++|+.|.++.. +++.+.+++.+..... ...|.+..|.++||+++++++...+++.+++ ++|++ |+|++
T Consensus 30 ~~~i~l~~~~~~~~-----~~~~~~~~~~~~~~~~-~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~i--t~G~~ 101 (391)
T PRK07309 30 PGILKLTLGEPDFT-----TPDHVKEAAKRAIDAN-QSHYTGMAGLLELRQAAADFVKEKYNLDYAPENEILV--TIGAT 101 (391)
T ss_pred CCeEEcCCCCCCCC-----CCHHHHHHHHHHHhcC-CCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEE--eCChH
Confidence 57899999998622 4577888887766543 3569999999999999999999888888875 79999 99999
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCC
Q psy14428 242 GSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHN 321 (583)
Q Consensus 242 ~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~N 321 (583)
+++.++ +..++.+||+|++++|+|..+...++..|++++.+++ +++++++|++.+++.+++..+++++++++||||
T Consensus 102 ~al~~~---~~~~~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~-~~~~~~~d~~~l~~~~~~~~~~~~~i~l~~P~N 177 (391)
T PRK07309 102 EALSAS---LTAILEPGDKVLLPAPAYPGYEPIVNLVGAEIVEIDT-TENDFVLTPEMLEKAILEQGDKLKAVILNYPAN 177 (391)
T ss_pred HHHHHH---HHHhcCCCCEEEEeCCCCcchHHHHHHcCCEEEEEec-CCcCCcCCHHHHHHHhhccCCCeEEEEEECCCC
Confidence 999985 4445677999999999999999999999999999998 555578899999988865445688999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEc
Q psy14428 322 PTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLT 401 (583)
Q Consensus 322 PTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~ 401 (583)
|||.+++.+++++|+++|++|+++||+||+|.++.+++ ....++..+ ..+++|+++||||+||+||+|+||+++
T Consensus 178 PtG~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~--~~~~~~~~~--~~~~~i~~~S~SK~~g~~GlRvG~~v~-- 251 (391)
T PRK07309 178 PTGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTG--EPHVSIAEY--LPDQTILINGLSKSHAMTGWRIGLIFA-- 251 (391)
T ss_pred CCCcCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCC--CCCCCHHHh--ccCCEEEEecChhhccCccceeEEEEe--
Confidence 99999999999999999999999999999999999865 233445443 237899999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHhcCC
Q psy14428 402 PTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEILSD 481 (583)
Q Consensus 402 p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~l~~ 481 (583)
+ +++++++.+.......+++.+.|.++.++++++...
T Consensus 252 ~-----~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~-------------------------------------- 288 (391)
T PRK07309 252 P-----AEFTAQLIKSHQYLVTAATTMAQFAAVEALTNGKDD-------------------------------------- 288 (391)
T ss_pred C-----HHHHHHHHHHHhhcccCCChHHHHHHHHHHhCChhH--------------------------------------
Confidence 7 589999998766666788999999999988763211
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCCh
Q psy14428 482 PKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSA 536 (583)
Q Consensus 482 ~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~ 536 (583)
..+++.++.++|+.+.+.|++.+ +.+..+++|+|.|..++.
T Consensus 289 ----------~~~~~~~~~~~~~~~~~~l~~~~----~~~~~p~gg~~~~~~l~~ 329 (391)
T PRK07309 289 ----------ALPMKKEYIKRRDYIIEKMTDLG----FKIIKPDGAFYIFAKIPA 329 (391)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHCC----CeecCCCeeEEEEEECCC
Confidence 12344555677888888887753 556778999999987654
|
|
| >PRK06108 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-40 Score=347.20 Aligned_cols=301 Identities=19% Similarity=0.169 Sum_probs=248.1
Q ss_pred CCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCch
Q psy14428 162 HPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGS 241 (583)
Q Consensus 162 ~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~ 241 (583)
.++.++|+.|+++.+ +++.+.+++.+...+. ...|++..|.++||+++++++.+.+|+.+++++|++ |+|++
T Consensus 23 ~~~~i~l~~g~~~~~-----~~~~~~~~~~~~~~~~-~~~Y~~~~G~~~lr~~la~~~~~~~~~~~~~~~i~~--t~g~~ 94 (382)
T PRK06108 23 REGVLPLWFGESDLP-----TPDFIRDAAAAALADG-ETFYTHNLGIPELREALARYVSRLHGVATPPERIAV--TSSGV 94 (382)
T ss_pred cCCeEEecCCCCCCC-----CCHHHHHHHHHHHhcC-CCCCCCCCCCHHHHHHHHHHHHHHhCCCcCcceEEE--eCChH
Confidence 357899999998522 4578888888777653 456999999999999999999988888899999999 99999
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccC--CCCCCChhhHHHHHHcCCCCcEEEEeCCC
Q psy14428 242 GSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDN--KTNGLDFAGMMEDIKAMPERSILFLQTSS 319 (583)
Q Consensus 242 ~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~--~~~g~d~~~l~~~l~~~~~~~~~i~i~~p 319 (583)
+++.++ +..++.+||+|++++|+|+.+...++..|++++.+|+ +. .++.+|++.+++.+ .++++++++++|
T Consensus 95 ~al~~~---~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~-~~~~~~~~~d~~~l~~~~---~~~~~~i~l~~p 167 (382)
T PRK06108 95 QALMLA---AQALVGPGDEVVAVTPLWPNLVAAPKILGARVVCVPL-DFGGGGWTLDLDRLLAAI---TPRTRALFINSP 167 (382)
T ss_pred HHHHHH---HHHhcCCCCEEEEeCCCccchHHHHHHCCCEEEEeeC-CCCCCCccCCHHHHHHhc---CccceEEEEECC
Confidence 999985 4456677999999999999999999999999999999 43 23568999998877 457888999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEE
Q psy14428 320 HNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSV 399 (583)
Q Consensus 320 ~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~ 399 (583)
|||||.+++.+++++|+++|++++++||+||+|.++.++.. ...+++..+.+..+++++++||||+||++|+|+||+++
T Consensus 168 ~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~-~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~~~~ 246 (382)
T PRK06108 168 NNPTGWTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPG-GRAPSFLDIAEPDDRIIFVNSFSKNWAMTGWRLGWLVA 246 (382)
T ss_pred CCCCCcccCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCC-CCCCCHhhcCCCcCCEEEEeechhhccCcccceeeeeC
Confidence 99999999999999999999999999999999999998621 23334444434457899999999999999999999999
Q ss_pred EcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHhc
Q psy14428 400 LTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEIL 479 (583)
Q Consensus 400 ~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~l 479 (583)
+ +++++++.+.......++|.+.|.++..+++++.
T Consensus 247 --~-----~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~-------------------------------------- 281 (382)
T PRK06108 247 --P-----PALGQVLEKLIEYNTSCVAQFVQRAAVAALDEGE-------------------------------------- 281 (382)
T ss_pred --C-----HHHHHHHHHHHHhcccCCChHHHHHHHHHHhCCh--------------------------------------
Confidence 7 5899999887766677889999999988886521
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCCh
Q psy14428 480 SDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSA 536 (583)
Q Consensus 480 ~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~ 536 (583)
++++++++++.++|+.+.+.|++. +| +.+..+++|+|.|..++.
T Consensus 282 ----------~~~~~~~~~~~~~~~~l~~~L~~~--~~-~~~~~p~~g~~~~~~l~~ 325 (382)
T PRK06108 282 ----------DFVAELVARLRRSRDHLVDALRAL--PG-VEVAKPDGAMYAFFRIPG 325 (382)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHhC--CC-CcccCCCeeEEEEEeCCC
Confidence 124455666778888888888775 33 566778999999988754
|
|
| >PRK08361 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-40 Score=347.30 Aligned_cols=299 Identities=15% Similarity=0.189 Sum_probs=249.3
Q ss_pred CCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchh
Q psy14428 163 PKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSG 242 (583)
Q Consensus 163 ~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~ 242 (583)
++.++|+.|+++.. +++.+.+++.++.... ...|.|..|.++||+++|+++.+.+|+.+++++|++ |+|+++
T Consensus 33 ~~~i~l~~~~~~~~-----~~~~~~~~~~~~~~~~-~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~--t~G~~~ 104 (391)
T PRK08361 33 ENVISLGIGEPDFD-----TPKNIKEAAKRALDEG-WTHYTPNAGIPELREAIAEYYKKFYGVDVDVDNVIV--TAGAYE 104 (391)
T ss_pred cCeEEcCCCCCCCC-----CCHHHHHHHHHHHhcC-CCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEE--eCChHH
Confidence 56899999998632 3578888888776543 467999999999999999999887888899999999 999999
Q ss_pred HHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCC-CCCCChhhHHHHHHcCCCCcEEEEeCCCCC
Q psy14428 243 SLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNK-TNGLDFAGMMEDIKAMPERSILFLQTSSHN 321 (583)
Q Consensus 243 al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~-~~g~d~~~l~~~l~~~~~~~~~i~i~~p~N 321 (583)
++.++ +..++.+||+|++++|+|..+...++..|++++.+|+ +++ ++++|++.+++.+ .+++++++++||||
T Consensus 105 al~~~---~~~l~~~g~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~-~~~~~~~~d~~~l~~~i---~~~~~~v~i~~p~N 177 (391)
T PRK08361 105 ATYLA---FESLLEEGDEVIIPDPAFVCYVEDAKIAEAKPIRIPL-REENEFQPDPDELLELI---TKRTRMIVINYPNN 177 (391)
T ss_pred HHHHH---HHHhcCCCCEEEEcCCCCcccHHHHHHcCCEEEEEec-CCccCCCCCHHHHHHhc---ccccEEEEEeCCCC
Confidence 99985 4456677999999999999999999999999999999 543 4679999998877 45678999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEc
Q psy14428 322 PTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLT 401 (583)
Q Consensus 322 PTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~ 401 (583)
|||.+++.+++++|+++|++++++||+||+|.+|.+++. ...++.++ ..+++|+++||||+||+||+|+||+++
T Consensus 178 PtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~--~~~~~~~~--~~~~~i~~~s~SK~~~~~GlRiG~~~~-- 251 (391)
T PRK08361 178 PTGATLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGA--KHYPMIKY--APDNTILANSFSKTFAMTGWRLGFVIA-- 251 (391)
T ss_pred CCCcCcCHHHHHHHHHHHHHcCeEEEEEcccccceeCCC--CCCCHhhc--CCCCEEEEecCchhcCCcHhhhhhhcc--
Confidence 999999999999999999999999999999999988642 23344433 246899999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHhcCC
Q psy14428 402 PTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEILSD 481 (583)
Q Consensus 402 p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~l~~ 481 (583)
+ +++++++.+.......+++.+.|.++..+++++...
T Consensus 252 ~-----~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~-------------------------------------- 288 (391)
T PRK08361 252 P-----EQVIKDMIKLHAYIIGNVASFVQIAGIEALRSKESW-------------------------------------- 288 (391)
T ss_pred C-----HHHHHHHHHHHhhhccCCChHHHHHHHHHhcCCccc--------------------------------------
Confidence 7 578999888777667788999999999888763211
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCCh
Q psy14428 482 PKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSA 536 (583)
Q Consensus 482 ~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~ 536 (583)
++++++++++.++|+.+.+.|++. || +.+..+++|+|.|..++.
T Consensus 289 --------~~~~~~~~~~~~~~~~~~~~L~~~--~~-~~~~~p~g~~~~~~~l~~ 332 (391)
T PRK08361 289 --------KAVEEMRKEYNERRKLVLKRLKEM--PH-IKVFEPKGAFYVFANIDE 332 (391)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHhC--CC-CeecCCCEEEEEEEECCC
Confidence 235667777788899999999874 33 566778999999987763
|
|
| >PRK06107 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=347.31 Aligned_cols=300 Identities=16% Similarity=0.169 Sum_probs=249.8
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
.+++.++|+.|.++.. +++.+.+++.+.+... ..+|+++.|.++||+++++++.+.+|+.+++++|++ |+|+
T Consensus 31 ~~~~~i~l~~g~p~~~-----~~~~~~~~~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~--t~G~ 102 (402)
T PRK06107 31 AGRSIVDLTVGEPDFD-----TPDHIKQAAVAAIERG-ETKYTLVNGTPALRKAIIAKLERRNGLHYADNEITV--GGGA 102 (402)
T ss_pred ccCCEEEcCCCCCCCC-----CCHHHHHHHHHHHHcC-CCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEE--eCCH
Confidence 4567899999998632 4577888888877543 567999999999999999999988899999999999 9999
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccC-CCCCCChhhHHHHHHcCCCCcEEEEeCCC
Q psy14428 241 SGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDN-KTNGLDFAGMMEDIKAMPERSILFLQTSS 319 (583)
Q Consensus 241 ~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~-~~~g~d~~~l~~~l~~~~~~~~~i~i~~p 319 (583)
++|+.++ +..++.+||+|++++|+|..|...+...|.+++.+++ ++ +++.+|++.+++.+ .+++++++++||
T Consensus 103 ~~al~~~---~~~~~~~gd~vl~~~p~y~~y~~~~~~~~~~~~~v~~-~~~~~~~~~~~~l~~~~---~~~~~~v~l~~p 175 (402)
T PRK06107 103 KQAIFLA---LMATLEAGDEVIIPAPYWVSYPDMVLANDGTPVIVAC-PEEQGFKLTPEALEAAI---TPRTRWLILNAP 175 (402)
T ss_pred HHHHHHH---HHHhcCCCCEEEEecCCCcCHHHHHHHcCCEEEEecC-CcccCCCCCHHHHHhhc---CcCceEEEEECC
Confidence 9999985 3446677999999999999999999999999988988 43 34668888888876 457888889999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhc-CeEEEEeccCCCCCCCCCCCchHHHHHHH-HhcCcEEEEecCcccccccCccceEE
Q psy14428 320 HNPTGVDLSEDQWRQLAVVVKQR-HLYPFFDMAYLGLTSGDFDKDAFSLRYFA-KEVGQLCLAQSFSKNMGLYGERVGTF 397 (583)
Q Consensus 320 ~NPTG~~~s~~~~~~l~~~a~~~-~i~iI~De~Y~~l~~~~~~~~~~~~~~~~-~~~~~vi~i~S~SK~~~l~GlRiG~l 397 (583)
|||||.+++.+++++|+++|+++ +++||+||+|.++.|++ .+.+++.++. +..+++|+++||||+|++||+|+||+
T Consensus 176 ~NPtG~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~--~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~ 253 (402)
T PRK06107 176 SNPTGAVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDD--EPTPHLLAAAPELRDRVLVTNGVSKTYAMTGWRIGYA 253 (402)
T ss_pred CCCCCcCcCHHHHHHHHHHHHHcCCeEEEEehhccccccCC--CCCCCHHHhCcCccCCEEEEeccchhhcCcccceeee
Confidence 99999999999999999999998 99999999999998875 2344555542 23468999999999999999999999
Q ss_pred EEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHH
Q psy14428 398 SVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTE 477 (583)
Q Consensus 398 v~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~ 477 (583)
++ | +++++++.........+++.+.|.++..+++++.
T Consensus 254 ~~--~-----~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~------------------------------------ 290 (402)
T PRK06107 254 AG--P-----ADLIAAINKLQSQSSSCPSSISQAAAAAALNGDQ------------------------------------ 290 (402)
T ss_pred ec--C-----HHHHHHHHHHHHhcccCCChHHHHHHHHHhcCCh------------------------------------
Confidence 99 7 5899999999888888999999999999986421
Q ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCC
Q psy14428 478 ILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLS 535 (583)
Q Consensus 478 ~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~ 535 (583)
+++++.++.+.++|+.+.+.|++. +| +.+..+++|+|.|.+++
T Consensus 291 ------------~~~~~~~~~~~~~~~~~~~~L~~~--~g-~~~~~p~gg~~~~~~~~ 333 (402)
T PRK06107 291 ------------SFVTESVAVYKQRRDYALALLNAI--PG-LSCLVPDGAFYLYVNCA 333 (402)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHhcC--CC-CcccCCCcceEEeeecc
Confidence 114455566788888898988774 33 56678999999998763
|
|
| >PRK07550 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=345.18 Aligned_cols=301 Identities=17% Similarity=0.143 Sum_probs=244.3
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
.+...++|+.|.++.. +++.+.+++.+.........|.+..|.++||+++++++.+.+|+.+++++|++ |+|+
T Consensus 27 ~~~~~i~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~--t~G~ 99 (386)
T PRK07550 27 ADGPLIDLSQAVPGYP-----PPPELLRALAEAAADPAAHLYGPVEGLPELREAYAAHYSRLYGAAISPEQVHI--TSGC 99 (386)
T ss_pred cCCCeEEeCCCCCCCC-----CCHHHHHHHHHHHhCcCCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEE--ecCc
Confidence 4556899999998521 45788888877765444577999999999999999999988899999999999 9999
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccC-CCCCCChhhHHHHHHcCCCCcEEEEeCCC
Q psy14428 241 SGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDN-KTNGLDFAGMMEDIKAMPERSILFLQTSS 319 (583)
Q Consensus 241 ~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~-~~~g~d~~~l~~~l~~~~~~~~~i~i~~p 319 (583)
++++.++ +..++.+||+|++++|+|..+...++..|++++.+++ ++ +++.+|++.+++.+ .++++++++++|
T Consensus 100 ~~al~~~---~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~-~~~~~~~~~~~~l~~~~---~~~~~~v~~~~P 172 (386)
T PRK07550 100 NQAFWAA---MVTLAGAGDEVILPLPWYFNHKMWLDMLGIRPVYLPC-DEGPGLLPDPAAAEALI---TPRTRAIALVTP 172 (386)
T ss_pred HHHHHHH---HHHhcCCCCEEEEcCCCCcchHHHHHhcCCEEEEEec-CCCcCCCCCHHHHHHHh---cccCcEEEEeCC
Confidence 9999885 4456677999999999999999999999999999999 54 34557888898887 346778888899
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEE
Q psy14428 320 HNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSV 399 (583)
Q Consensus 320 ~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~ 399 (583)
|||||.+++.+++++|+++|++++++||+||+|.+|.++.. ...++.+..+..+++++++||||++|+||+|+||+++
T Consensus 173 ~NPtG~~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~--~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~i~~ 250 (386)
T PRK07550 173 NNPTGVVYPPELLHELYDLARRHGIALILDETYRDFDSGGG--APHDLFADPDWDDTLVHLYSFSKSYALTGHRVGAVVA 250 (386)
T ss_pred CCCCCcccCHHHHHHHHHHHHHcCeEEEEeccchhhccCCC--CCcchhhCCCccccEEEEecchhhccCcccceEeeec
Confidence 99999999999999999999999999999999999977531 2222322222356899999999999999999999999
Q ss_pred EcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHhc
Q psy14428 400 LTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEIL 479 (583)
Q Consensus 400 ~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~l 479 (583)
+ +++++++.+.......++|.++|.++..++++ +
T Consensus 251 --~-----~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~--~------------------------------------- 284 (386)
T PRK07550 251 --S-----PARIAEIEKFMDTVAICAPRIGQIAVAWGLPN--L------------------------------------- 284 (386)
T ss_pred --C-----HHHHHHHHHHHhhcccCCCcHHHHHHHHHhcc--H-------------------------------------
Confidence 7 57899999888777888899999999888754 1
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCCh
Q psy14428 480 SDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSA 536 (583)
Q Consensus 480 ~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~ 536 (583)
.++++++++.+.++|+.+.+.|++. + .+. ..+++|+|.|..++.
T Consensus 285 ---------~~~~~~~~~~~~~~~~~l~~~L~~~--~-~~~-~~~~g~~~~~~~~~~ 328 (386)
T PRK07550 285 ---------ADWRAGNRAEIARRRDAFRAVFARL--P-GWE-LLASGAYFAYVRHPF 328 (386)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHhC--C-Cce-eCCCceEEEEecCCC
Confidence 1224455666778888888888875 2 243 246789999987754
|
|
| >PRK07777 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-39 Score=340.57 Aligned_cols=298 Identities=13% Similarity=0.145 Sum_probs=242.7
Q ss_pred CCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCC-CeEEEecCCc
Q psy14428 162 HPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDN-RLAIVQGISG 240 (583)
Q Consensus 162 ~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~-~I~i~~t~G~ 240 (583)
.++.++|+.|.|+.+ .++.+.+++.+..... ..+|++..|.++||+++++++.+.+|+.++++ +|++ |+|+
T Consensus 23 ~~~~i~l~~g~p~~~-----~~~~~~~~~~~~~~~~-~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~--t~G~ 94 (387)
T PRK07777 23 RTGAVNLGQGFPDED-----GPPEMLEAAQEAIAGG-VNQYPPGPGIPELRAAIAAQRRRRYGLEYDPDTEVLV--TVGA 94 (387)
T ss_pred hCCeEEccCCCCCCC-----CCHHHHHHHHHHHhcC-CCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEE--eCCc
Confidence 457899999998743 2244566666555443 46799999999999999999988888888886 7999 9999
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCC--CCCCChhhHHHHHHcCCCCcEEEEeCC
Q psy14428 241 SGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNK--TNGLDFAGMMEDIKAMPERSILFLQTS 318 (583)
Q Consensus 241 ~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~--~~g~d~~~l~~~l~~~~~~~~~i~i~~ 318 (583)
++++.++ +..++.+||+|++++|+|..+...++..|.+++.+++ +++ ++.+|++.+++.+ .+++++++++|
T Consensus 95 ~~al~~~---~~~~~~~gd~vli~~p~y~~~~~~~~~~g~~~~~~~~-~~~~~~~~~d~~~l~~~~---~~~~~~v~l~~ 167 (387)
T PRK07777 95 TEAIAAA---VLGLVEPGDEVLLIEPYYDSYAAVIAMAGAHRVPVPL-VPDGRGFALDLDALRAAV---TPRTRALIVNS 167 (387)
T ss_pred HHHHHHH---HHHhcCCCCEEEEeCCCchhhHHHHHHCCCEEEEeec-CCccCCCcCCHHHHHHhc---CcccEEEEEcC
Confidence 9999885 3455677999999999999999999999999999998 443 4668999998877 45778999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEE
Q psy14428 319 SHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFS 398 (583)
Q Consensus 319 p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv 398 (583)
||||||.+++.+++++|+++|++++++||+||+|.++.+++. ...++.++.+..+++|+++||||+||+||+|+||++
T Consensus 168 p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~--~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~ 245 (387)
T PRK07777 168 PHNPTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGA--RHLPLATLPGMRERTVTISSAAKTFNVTGWKIGWAC 245 (387)
T ss_pred CCCCCCccCCHHHHHHHHHHHHhcCcEEEEeccchhcccCCC--CcccHhhCCCCcCcEEEEeechhhccCcCceeEEEe
Confidence 999999999999999999999999999999999999998652 333454443335689999999999999999999999
Q ss_pred EEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHh
Q psy14428 399 VLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEI 478 (583)
Q Consensus 399 ~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~ 478 (583)
+ + +++++++.+.......+++.+.|.++..++.+..
T Consensus 246 ~--~-----~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~------------------------------------- 281 (387)
T PRK07777 246 G--P-----APLIAAVRAAKQYLTYVGGAPFQPAVAHALDHED------------------------------------- 281 (387)
T ss_pred c--C-----HHHHHHHHHHHhhcccCCCCHHHHHHHHHHhCCc-------------------------------------
Confidence 9 7 5899999888776667778888888877775420
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCC
Q psy14428 479 LSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLS 535 (583)
Q Consensus 479 l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~ 535 (583)
++++++++.+.++|+.+.+.|++.+ +.+..+++|+|.|..++
T Consensus 282 -----------~~~~~~~~~~~~~~~~l~~~L~~~~----~~~~~~~g~~~~~~~~~ 323 (387)
T PRK07777 282 -----------AWVAALRDSLQAKRDRLAAGLAEAG----FEVHDSAGTYFLCADPR 323 (387)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHhCC----CCccCCCcceEEEeccc
Confidence 1244566677888999999998753 55667889999998764
|
|
| >PRK07324 transaminase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-39 Score=340.79 Aligned_cols=291 Identities=14% Similarity=0.082 Sum_probs=237.4
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
...++++|+.|+++.. .++.+ +++.+..... .++|++..|.++||++||+++.. +++++|++ |+|+
T Consensus 24 ~~~~~~~~~~~e~~~~-----~~~~~-~~~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~~~~-----~~~~~vi~--t~G~ 89 (373)
T PRK07324 24 AESCIDSLTLEELLAL-----AGKNP-EAFYQELGQK-KLTYGWIEGSPEFKEAVASLYQN-----VKPENILQ--TNGA 89 (373)
T ss_pred ccCCCCCCcHHHHHhc-----cCcch-HHHHHHHhcC-CccCCCCCCCHHHHHHHHHHhcC-----CChhhEEE--cCCh
Confidence 4668899999999643 23445 5555555442 56899999999999999999863 67899999 9999
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCC-CCCCChhhHHHHHHcCCCCcEEEEeCCC
Q psy14428 241 SGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNK-TNGLDFAGMMEDIKAMPERSILFLQTSS 319 (583)
Q Consensus 241 ~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~-~~g~d~~~l~~~l~~~~~~~~~i~i~~p 319 (583)
++++.++ +..++++||+|+++.|+|..+...++..|++++.+|+ +++ ++.+|++.+++.+ .+++++++++||
T Consensus 90 ~~al~~~---~~~l~~~gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~~-~~~~~~~~d~~~l~~~~---~~~~kli~i~~p 162 (373)
T PRK07324 90 TGANFLV---LYALVEPGDHVISVYPTYQQLYDIPESLGAEVDYWQL-KEENGWLPDLDELRRLV---RPNTKLICINNA 162 (373)
T ss_pred HHHHHHH---HHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEEec-ccccCCCCCHHHHHHhC---CCCCcEEEEeCC
Confidence 9999985 4456778999999999999999999999999999999 443 4567888887766 567889999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEE
Q psy14428 320 HNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSV 399 (583)
Q Consensus 320 ~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~ 399 (583)
|||||.+++.+++++|+++|+++|++||+||+|.++.+++ ..+++.. ..+++|+++||||+||+||+|+||+++
T Consensus 163 ~NPtG~~~~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~---~~~s~~~---~~~~~I~~~s~SK~~~~~G~RiG~i~~ 236 (373)
T PRK07324 163 NNPTGALMDRAYLEEIVEIARSVDAYVLSDEVYRPLDEDG---STPSIAD---LYEKGISTNSMSKTYSLPGIRVGWIAA 236 (373)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCC---CCCChhh---ccCCEEEEecchhhcCCccceeEEEec
Confidence 9999999999999999999999999999999999998864 2334433 356899999999999999999999999
Q ss_pred EcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHhc
Q psy14428 400 LTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEIL 479 (583)
Q Consensus 400 ~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~l 479 (583)
| +++++++.+.+.....+++.++|.++..++++.
T Consensus 237 --~-----~~li~~~~~~~~~~~~~~~~~~q~~a~~~l~~~--------------------------------------- 270 (373)
T PRK07324 237 --N-----EEVIDILRKYRDYTMICAGVFDDMLASLALEHR--------------------------------------- 270 (373)
T ss_pred --C-----HHHHHHHHHHhCcEEecCChHHHHHHHHHHcCH---------------------------------------
Confidence 7 689999999988888889999999888777541
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCCh
Q psy14428 480 SDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSA 536 (583)
Q Consensus 480 ~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~ 536 (583)
.++++++++.+.++|+.+.+.|++. + .+....|++|+|.|..++.
T Consensus 271 ---------~~~l~~~~~~~~~~~~~l~~~l~~~--~-~~~~~~p~gg~~~~i~~~~ 315 (373)
T PRK07324 271 ---------DAILERNRKIVRTNLAILDEWVAKE--P-RVSYVKPKAVSTSFVKLDV 315 (373)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHhcC--C-CceEECCCceEEEEEEeCC
Confidence 1234556667778888888888764 2 2556778999988876653
|
|
| >PRK02610 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-39 Score=337.53 Aligned_cols=286 Identities=14% Similarity=0.182 Sum_probs=221.8
Q ss_pred CCccccCCccccCCCCCCCCChHHHHHHHHHhccCC-CCCCCCCCCCHHHHHHHHHHHhCCC--CCCCCCCCeEEEecCC
Q psy14428 163 PKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNL-DHEYANIGGDAKFCKLAAQLAYGED--FPAFKDNRLAIVQGIS 239 (583)
Q Consensus 163 ~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~-~~~Y~~~~G~~~Lr~aia~~~~~~~--g~~~~~~~I~i~~t~G 239 (583)
+..++|+.|+++.. +++.+.+++.+...... ...|+ ..|.++||++||+|+++++ ++.+++++|++ |+|
T Consensus 28 ~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~Y~-~~G~~~Lr~aia~~~~~~~~~~~~v~~~~I~i--t~G 99 (374)
T PRK02610 28 IQLDRLDTNEFPYD-----LPPDLKQKLAWLYQQGIESNRYP-DGGHEALKQAIAEYVNESAAGSSQITPANISV--GNG 99 (374)
T ss_pred cceeEecCCCCCCC-----CCHHHHHHHHHHHhhcccccCCC-CCchHHHHHHHHHHhCccccccCCCCHHHEEE--cCC
Confidence 35788999988522 55788888877655421 35685 5799999999999998876 57899999999 999
Q ss_pred chhHHHHHHHHHHHhCCCCC-EEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcC-CCCcEEEEeC
Q psy14428 240 GSGSLRVGTAFLERFYPGVK-TVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAM-PERSILFLQT 317 (583)
Q Consensus 240 ~~~al~l~~~~l~~~~~~gd-~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~-~~~~~~i~i~ 317 (583)
+++++.++ ++ .++.+|| .|++++|+|..|...++..|++++.+++ +++++++|++.+++.+.+. ..++++++++
T Consensus 100 a~~al~~~--~~-~~~~~g~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~-~~~~~~~d~~~l~~~~~~~~~~~~k~i~l~ 175 (374)
T PRK02610 100 SDELIRSL--LI-ATCLGGEGSILVAEPTFSMYGILAQTLGIPVVRVGR-DPETFEIDLAAAQSAIEQTQNPPVRVVFVV 175 (374)
T ss_pred hHHHHHHH--HH-HHcCCCCCeEEEcCCChHHHHHHHHHcCCEEEEecC-CcccCCCCHHHHHHHHHhhcCCCceEEEEe
Confidence 99999874 22 3333465 8999999999999999999999999998 6656899999999888532 2578899999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEE
Q psy14428 318 SSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTF 397 (583)
Q Consensus 318 ~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~l 397 (583)
|||||||.+++.+++++|+++| ++++||+||+|.+|.+.. ++..+ ...+++|+++||||+||+||+|+||+
T Consensus 176 ~P~NPTG~~~s~~~l~~l~~~~--~~~~iI~De~Y~~~~~~~------~~~~~-~~~~~~ivi~SfSK~~g~~GlRiG~~ 246 (374)
T PRK02610 176 HPNSPTGNPLTAAELEWLRSLP--EDILVVIDEAYFEFSQTT------LVGEL-AQHPNWVILRTFSKAFRLAAHRVGYA 246 (374)
T ss_pred CCCCCCCCCCCHHHHHHHHhcc--CCcEEEEeccccccCccc------hHHHH-hcCCCEEEEEecchhccCcccceeee
Confidence 9999999999999999999876 489999999999996431 22232 33468999999999999999999999
Q ss_pred EEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHH---Hhh--ccCCCccchh
Q psy14428 398 SVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKIL---IRG--FYSNPPIHGA 472 (583)
Q Consensus 398 v~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~---~r~--~~~~~p~~g~ 472 (583)
++ | +++++++.+.+ ...++|.+.|.++..++++. +.+.+..++.++++..+ ++. .+...|++|+
T Consensus 247 v~--~-----~~l~~~l~~~~--~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~p~~g~ 315 (374)
T PRK02610 247 IG--H-----PELIAVLEKVR--LPYNLPSFSQLAAQLALEHR--QELLAAIPEILQERDRLYQALQELPQLRVWPSAAN 315 (374)
T ss_pred ec--C-----HHHHHHHHHhc--CCCCCCHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHHhCCCcEeCCCcce
Confidence 98 7 58999998865 34567999999999999863 23333333333333322 222 2345688999
Q ss_pred hHHHHhcC
Q psy14428 473 RIVTEILS 480 (583)
Q Consensus 473 ~i~~~~l~ 480 (583)
|+|+++..
T Consensus 316 f~~~~l~~ 323 (374)
T PRK02610 316 FLYLRLSQ 323 (374)
T ss_pred EEEEeCCC
Confidence 99988754
|
|
| >PRK09440 avtA valine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=348.45 Aligned_cols=304 Identities=16% Similarity=0.127 Sum_probs=228.3
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccC----CCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEe
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKN----LDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQ 236 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~----~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~ 236 (583)
.+++.|+|+.|.++. .|++.+.+.+++.+.+... ...+|++..|.++||++||+|+.+.+|+.+++++|++
T Consensus 28 ~~~~~i~l~~g~p~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~v~~~~I~i-- 102 (416)
T PRK09440 28 RTPGAIMLGGGNPAH---IPEMEDYFRDLLADLLASGKLTEALGNYDGPQGKDELIEALAALLNERYGWNISPQNIAL-- 102 (416)
T ss_pred cCCCceeccCCCCCc---cCCHHHHHHHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEE--
Confidence 346789999999852 1323467788877766532 2367999999999999999999988899999999999
Q ss_pred cCCchhHHHHHHHHHHHhCC-----CCCEEEE-cCCCChhhHHHHhhcCC----eEEEEecccCC--CCCCChhhHHHHH
Q psy14428 237 GISGSGSLRVGTAFLERFYP-----GVKTVYF-PTPTWNGHVRFCTDSRL----NVGAYRYFDNK--TNGLDFAGMMEDI 304 (583)
Q Consensus 237 t~G~~~al~l~~~~l~~~~~-----~gd~Vlv-~~P~y~~~~~~~~~~G~----~~~~v~~~d~~--~~g~d~~~l~~~l 304 (583)
|+|+++++.++. ..+++ +||.|++ ++|+|+.|...+...|. .+..+++ +++ .+++|++.++ +
T Consensus 103 t~Ga~~al~~~~---~~l~~~~~~~~gd~v~i~~~P~y~~y~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~l~--~ 176 (416)
T PRK09440 103 TNGSQSAFFYLF---NLFAGRRADGSLKKILFPLAPEYIGYADAGLEEDLFVSYRPNIELL-PEGQFKYHVDFEHLH--I 176 (416)
T ss_pred ccChHHHHHHHH---HHHhccccCCCCCeEEEecCCCchhhHHHhhccCceeecccccccc-cccccccCCCHHHcc--c
Confidence 999999999863 34442 5899999 79999999886554332 1222333 222 3578888775 2
Q ss_pred HcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCc
Q psy14428 305 KAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFS 384 (583)
Q Consensus 305 ~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~S 384 (583)
..+++++++||||||||.++|.+++++|+++|++++++||+||+|.++.... ...+.. ....+++|+++|||
T Consensus 177 ---~~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~---~~~~~~--~~~~~~vI~~~SfS 248 (416)
T PRK09440 177 ---DEDTGAICVSRPTNPTGNVLTDEELEKLDALARQHNIPLLIDNAYGPPFPGI---IFSEAT--PLWNPNIILCMSLS 248 (416)
T ss_pred ---CCCceEEEEecCCCCCCccCCHHHHHHHHHHHHHcCCcEEEeCCccccCCCc---chhhcC--ccccCCeEEEeccc
Confidence 4567899999999999999999999999999999999999999998654221 011110 11247999999999
Q ss_pred ccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhcc
Q psy14428 385 KNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFY 464 (583)
Q Consensus 385 K~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~ 464 (583)
|+ ++||+|+||+++ | +++++++.........++|.+.|.+++.+++++.+.+++.
T Consensus 249 K~-~~pGlRiG~~i~--~-----~~l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~----------------- 303 (416)
T PRK09440 249 KL-GLPGVRCGIVIA--D-----EEIIEALSNMNGIISLAPGRLGPAIAAEMIESGDLLRLSE----------------- 303 (416)
T ss_pred cc-CCCcceEEEEeC--C-----HHHHHHHHHHHHHhccCCCcHHHHHHHHHhccchHHHHHH-----------------
Confidence 96 899999999999 7 5899999998887778899999999999998754333221
Q ss_pred CCCccchhhHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCCh
Q psy14428 465 SNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSA 536 (583)
Q Consensus 465 ~~~p~~g~~i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~ 536 (583)
+.++..|.++++.+.+.|++.....++.+..+++|+|.|..++.
T Consensus 304 ----------------------------~~~~~~~~~r~~~~~~~L~~~l~~~~~~~~~p~gg~fiw~~~~~ 347 (416)
T PRK09440 304 ----------------------------TVIRPFYRQKVQLAIALLRRYLPDEPCLIHKPEGAIFLWLWFKD 347 (416)
T ss_pred ----------------------------HHHHHHHHHHHHHHHHHHHHhcccCCeEEecCCCceEEEEECCC
Confidence 11345556667777777766421112445678999999987764
|
|
| >PRK08363 alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=339.23 Aligned_cols=303 Identities=12% Similarity=0.117 Sum_probs=241.3
Q ss_pred CCCCccccCCccccC-CCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCC
Q psy14428 161 PHPKKMNLGVGAYRG-EDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGIS 239 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~-~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G 239 (583)
.+.+.|+|+.|.|.. +++ +++.+.+++.+.+... ...|++..|.++||+++++|++..+|+.+++++|++ |+|
T Consensus 28 ~~~~~i~l~~g~p~~~~~~---p~~~~~~~~~~~~~~~-~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~i--t~G 101 (398)
T PRK08363 28 KGIKVIRLNIGDPVKFDFQ---PPEHMKEAYCRAIKEG-HNYYGPSEGLPELREAIVKREKRKNGVDITPDDVRV--TAA 101 (398)
T ss_pred cCCCeEEEeCCCCCcCCCC---CCHHHHHHHHHHHHcC-CCCCCCCCCcHHHHHHHHHHHHHhcCCCCChhhEEE--eCC
Confidence 346789999999953 222 4678888888776543 457999999999999999999998899999999999 999
Q ss_pred chhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEE-ecccCCCCCCChhhHHHHHHcCCCCcEEEEeCC
Q psy14428 240 GSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAY-RYFDNKTNGLDFAGMMEDIKAMPERSILFLQTS 318 (583)
Q Consensus 240 ~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v-~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~ 318 (583)
+++++.++ +..++++||+|++++|+|..+...++..|++++.+ ++ +++++.+|++.+++.+ .+++++++++|
T Consensus 102 ~~~al~~~---~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~v~~~~~-~~~~~~~d~~~l~~~~---~~~~~~v~l~~ 174 (398)
T PRK08363 102 VTEALQLI---FGALLDPGDEILIPGPSYPPYTGLVKFYGGVPVEYRTI-EEEGWQPDIDDIRKKI---TEKTKAIAVIN 174 (398)
T ss_pred HHHHHHHH---HHHhCCCCCEEEEcCCCCcchHHHHHHcCCEEEEeccc-cccCCcCCHHHHHhhC---CcceEEEEEEC
Confidence 99999985 44567789999999999999999999999999988 45 5555668888888776 45778899999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEE
Q psy14428 319 SHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFS 398 (583)
Q Consensus 319 p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv 398 (583)
||||||.+++.+++++|+++|++++++||+||+|.++.+++ ...++.++ +...+||+++||||.|++||+|+||++
T Consensus 175 p~NPtG~~~~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~---~~~~~~~~-~~~~~vi~~~SfSK~~~~~GlRiG~~~ 250 (398)
T PRK08363 175 PNNPTGALYEKKTLKEILDIAGEHDLPVISDEIYDLMTYEG---KHVSPGSL-TKDVPVIVMNGLSKVYFATGWRLGYIY 250 (398)
T ss_pred CCCCCCcCcCHHHHHHHHHHHHHcCeEEEEhhhhhhhccCC---cccCHHHc-CcCCcEEEEecchhccCCccceEEEEE
Confidence 99999999999999999999999999999999999998865 23344444 234689999999999999999999999
Q ss_pred EEcCCchhHHHHHHHHHHHHhc---cccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHH
Q psy14428 399 VLTPTSDETERIMSQLKILIRG---FYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIV 475 (583)
Q Consensus 399 ~~~p~~~~~~~li~~l~~~~~~---~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~ 475 (583)
+ +++ +++++.+...... ...++|.+.|.++..++.+.
T Consensus 251 ~--~~~---~~~~~~l~~~~~~~~~~~~~~s~~~q~~~~~~l~~~----------------------------------- 290 (398)
T PRK08363 251 F--VDP---EGKLAEVREAIDKLARIRLCPNTPAQFAAIAGLTGP----------------------------------- 290 (398)
T ss_pred E--eCc---HHHHHHHHHHHHHHhcccccCChHHHHHHHHHHhCC-----------------------------------
Confidence 7 322 3566665544321 23578889999888877541
Q ss_pred HHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCCh
Q psy14428 476 TEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSA 536 (583)
Q Consensus 476 ~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~ 536 (583)
.++++++++++.++|+.+.+.|++. || +.+..+++|+|.|..++.
T Consensus 291 -------------~~~l~~~~~~~~~~~~~l~~~L~~~--~~-~~~~~p~g~~~~~~~l~~ 335 (398)
T PRK08363 291 -------------MDYLEEYMKKLKERRDYIYKRLNEI--PG-ISTTKPQGAFYIFPRIEE 335 (398)
T ss_pred -------------hHHHHHHHHHHHHHHHHHHHHHhcC--CC-CEecCCCeEEEEEEEecc
Confidence 1124455666778888888888774 33 556678999999976653
|
|
| >TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=338.48 Aligned_cols=324 Identities=17% Similarity=0.176 Sum_probs=250.6
Q ss_pred hhhHhhccccccC--CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCC
Q psy14428 148 KPLKQQLKGFNKD--PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFP 225 (583)
Q Consensus 148 ~~i~~l~~~~~~~--~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~ 225 (583)
+++..+...+++. .+.+.++|+.|.|... +...+++.+.+++.+.+.......|.+..|.++||++++++++...++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~-~~~~~~~~~~~~~~~~l~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~ 92 (403)
T TIGR01265 14 NPIRAIVDNLKVKPNPEKPIIPLSHGDPSVF-GNLRTDPEAEEAVKDALRSGKFNGYAPSVGALAAREAVAEYLSSDLPG 92 (403)
T ss_pred HHHHHHHHHHHHHHhcCCCeEEeCCCCCCcc-CCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhhcCC
Confidence 3444444433322 3568899999998521 113356788888887775543467999999999999999999988888
Q ss_pred CCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHH
Q psy14428 226 AFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIK 305 (583)
Q Consensus 226 ~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~ 305 (583)
.+++++|++ |+|+++++.++ +..++.+||+|++++|+|..+...++..|++++.+++..++++++|++.+++.+
T Consensus 93 ~~~~~~ii~--t~G~t~al~~~---~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~- 166 (403)
T TIGR01265 93 KLTADDVVL--TSGCSQAIEIC---IEALANPGANILVPRPGFPLYDTRAAFSGLEVRLYDLLPEKDWEIDLDGLEALA- 166 (403)
T ss_pred CCCHHHEEE--ecChHHHHHHH---HHHhCCCCCEEEEeCCCchhHHHHHHHcCCEEEEecCCcccCCccCHHHHHHHh-
Confidence 899999999 99999999985 444557799999999999999999999999999998832335789999998877
Q ss_pred cCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcc
Q psy14428 306 AMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSK 385 (583)
Q Consensus 306 ~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK 385 (583)
.++++++++++||||||.+++.+++++|+++|+++|++||+||+|.+|.+++ .+..++.++ +...++|+++||||
T Consensus 167 --~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~--~~~~~~~~~-~~~~~vi~~~S~SK 241 (403)
T TIGR01265 167 --DEKTVAIVVINPSNPCGSVFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGD--APFIPMASF-ASIVPVLSLGGISK 241 (403)
T ss_pred --CcCccEEEEecCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCC--CCccchhhh-ccCCcEEEEeeccc
Confidence 4567889999999999999999999999999999999999999999999875 234456665 33457999999999
Q ss_pred cccccCccceEEEEEcCCch-hH-HHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhc
Q psy14428 386 NMGLYGERVGTFSVLTPTSD-ET-ERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGF 463 (583)
Q Consensus 386 ~~~l~GlRiG~lv~~~p~~~-~~-~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~ 463 (583)
+|++||+|+||+++ ++++ .. +++++.+.+... ...+++.+.|.++..++++..
T Consensus 242 ~~~~pGlRiG~~v~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~~~~~l~~~~---------------------- 296 (403)
T TIGR01265 242 RWVVPGWRLGWIII--HDPHGIFRDTVLQGLKNLLQ-RILGPATIVQGALPDILENTP---------------------- 296 (403)
T ss_pred ccCCCcceEEEEEE--eCchhhhHHHHHHHHHHHhh-hhcCCChHHHHHHHHHHHhCh----------------------
Confidence 99999999999999 5431 00 124445554432 245789999999988886410
Q ss_pred cCCCccchhhHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCCh
Q psy14428 464 YSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSA 536 (583)
Q Consensus 464 ~~~~p~~g~~i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~ 536 (583)
..+++++++++.++|+.+.+.|+.. || +.+..|++|+|.|..++.
T Consensus 297 -------------------------~~~~~~~~~~~~~~~~~l~~~L~~~--~~-~~~~~p~~g~f~~~~~~~ 341 (403)
T TIGR01265 297 -------------------------QEFFDGKISVLKSNAELCYEELKDI--PG-LVCPKPEGAMYLMVKLEL 341 (403)
T ss_pred -------------------------HHHHHHHHHHHHHHHHHHHHHHhcC--CC-ceecCCCceeEEEEeccc
Confidence 1224555666677888899988764 33 455678999999998864
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. |
| >PRK09265 aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=337.67 Aligned_cols=308 Identities=15% Similarity=0.139 Sum_probs=234.8
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
.+++.++|+.|.+.. .+.+ +++.+.+++.+.... ...|+++.|.++||+++|+++..+....+++++|++ |+|+
T Consensus 31 ~~~~~i~l~~g~p~~-~~~~-~~~~i~~~~~~~~~~--~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~i~~--t~G~ 104 (404)
T PRK09265 31 EGHKILKLNIGNPAP-FGFE-APDEILRDVIRNLPT--AQGYSDSKGLFSARKAIMQYYQQKGIPDVDVDDIYI--GNGV 104 (404)
T ss_pred cCCCeEEecCCCCCc-CCCC-CCHHHHHHHHHHhhc--CCCCCCCCCcHHHHHHHHHHHhccCCCCCCcccEEE--eCCh
Confidence 456889999998853 2212 345566665544432 567999999999999999999876555789999999 9999
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccC-CCCCCChhhHHHHHHcCCCCcEEEEeCCC
Q psy14428 241 SGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDN-KTNGLDFAGMMEDIKAMPERSILFLQTSS 319 (583)
Q Consensus 241 ~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~-~~~g~d~~~l~~~l~~~~~~~~~i~i~~p 319 (583)
++++.++ +..++.+||+|++++|+|..+...++..|++++.+++ |. +++.+|++.+++.+ .+++++++++||
T Consensus 105 ~~~l~~~---~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~v~~~~-~~~~~~~~d~~~l~~~~---~~~~~~v~l~~P 177 (404)
T PRK09265 105 SELIVMA---MQALLNNGDEVLVPAPDYPLWTAAVSLSGGKPVHYLC-DEEAGWFPDLDDIRSKI---TPRTKAIVIINP 177 (404)
T ss_pred HHHHHHH---HHHhCCCCCEEEEeCCCCcChHHHHHHcCCEEEEEec-ccccCCCCCHHHHHHhc---cccceEEEEECC
Confidence 9999885 4456677999999999999999999999999999987 43 34668999988876 457889999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEE
Q psy14428 320 HNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSV 399 (583)
Q Consensus 320 ~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~ 399 (583)
|||||.+++.+++++|+++|++++++||+||+|.++.+++ ...+++.++. ...++|+++||||+||+||+|+||+++
T Consensus 178 ~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~--~~~~~~~~~~-~~~~vi~~~S~SK~~~~pGlRiG~~v~ 254 (404)
T PRK09265 178 NNPTGAVYSKELLEEIVEIARQHNLIIFADEIYDKILYDG--AVHISIASLA-PDLLCVTFNGLSKAYRVAGFRVGWMVL 254 (404)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhhhccCCC--CCcCCHHHcC-CCceEEEEecchhhccCcccceEEEEE
Confidence 9999999999999999999999999999999999999875 2344555542 334799999999999999999999997
Q ss_pred EcCCch-hHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHh
Q psy14428 400 LTPTSD-ETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEI 478 (583)
Q Consensus 400 ~~p~~~-~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~ 478 (583)
+.+. ..+.+++.+... .....++|.++|.++..++.+....
T Consensus 255 --~~~~~~~~~~~~~~~~~-~~~~~~~~~~~q~~~~~~l~~~~~~----------------------------------- 296 (404)
T PRK09265 255 --SGPKKHAKGYIEGLDML-ASMRLCANVPAQHAIQTALGGYQSI----------------------------------- 296 (404)
T ss_pred --eCchHHHHHHHHHHHHH-hccccCCCcHHHHHHHHHhcCchhH-----------------------------------
Confidence 4221 112355555432 3455688999999999888642100
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCCh
Q psy14428 479 LSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSA 536 (583)
Q Consensus 479 l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~ 536 (583)
++..+.++++.++|+.+.+.|+++ || +.+..+++|+|+|..++.
T Consensus 297 -----------~~~~~~~~~~~~~r~~~~~~L~~~--~~-~~~~~p~~g~~l~~~~~~ 340 (404)
T PRK09265 297 -----------NELILPGGRLYEQRDRAWELLNAI--PG-VSCVKPKGALYAFPKLDP 340 (404)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHhcC--CC-CcccCCCcceEEEEEecc
Confidence 001111123456678888888764 33 667789999999987764
|
|
| >PRK09275 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-39 Score=345.52 Aligned_cols=302 Identities=14% Similarity=0.068 Sum_probs=215.9
Q ss_pred CccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCC-CCCCC-C--CCCeEEEecCC
Q psy14428 164 KKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGE-DFPAF-K--DNRLAIVQGIS 239 (583)
Q Consensus 164 ~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~-~g~~~-~--~~~I~i~~t~G 239 (583)
+.|+|+.|+|+.+ +++.+.++...+.. .+|+++.|.++||++|++++.++ .+... . +++|++ |+|
T Consensus 101 ~~i~l~~g~p~~~-----~~~~v~e~~~~~~~----~~Y~~~~g~~~lreaia~~~~~~~~~~~~~~~~~~~I~v--T~G 169 (527)
T PRK09275 101 DAVSYVRDQLGFD-----ADEFVYELVDGIIG----DNYPVPDRMLKHTEKIVKDYLRQEMCGGRPPKGEFDLFA--VEG 169 (527)
T ss_pred HHHhhcCCCCCCC-----CCHHHHHHHHHHhc----CCCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEE--eCC
Confidence 4589999999743 45677776655532 35999999999999999965443 33222 2 349999 999
Q ss_pred chhHHHHHHHHHH--HhCCCCCEEEEcCCCChhhHHHHhhcC--CeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEE
Q psy14428 240 GSGSLRVGTAFLE--RFYPGVKTVYFPTPTWNGHVRFCTDSR--LNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFL 315 (583)
Q Consensus 240 ~~~al~l~~~~l~--~~~~~gd~Vlv~~P~y~~~~~~~~~~G--~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~ 315 (583)
+++|+..+...+. .+++|||+|++++|+|+.|..+++..| .++++++...++++.+|++.+++.+ .+++++++
T Consensus 170 a~~al~~~~~aL~~~~ll~pGD~Vlv~~P~y~~Y~~~~~l~g~~~~~v~v~~~~~~~f~~d~~~l~~~~---~~~tkai~ 246 (527)
T PRK09275 170 GTAAMCYIFDSLKENGLLKAGDKIALMTPIFTPYLEIPELPRYDLEVVHINADEENEWQYPDSELEKLR---DPSIKALF 246 (527)
T ss_pred HHHHHHHHHHHHhhhhcCCCCCEEEEeCCChHHHHHHHHHcCCCeEEEEeecCcccCCCCCHHHHHhhc---CCCCCEEE
Confidence 9999998643321 367789999999999999999988775 5556666521234788888887765 67889999
Q ss_pred eCCCCCCCCCCCCHHHHHHHHHHHHh--cCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCcc
Q psy14428 316 QTSSHNPTGVDLSEDQWRQLAVVVKQ--RHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGER 393 (583)
Q Consensus 316 i~~p~NPTG~~~s~~~~~~l~~~a~~--~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlR 393 (583)
++|||||||.++|.+++++|+++|++ ++++||+||+|.+|.+. ..++... ..+++|+++||||+|+++|||
T Consensus 247 l~nP~NPTG~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~-----~~s~~~~--~~~~~I~v~SfSK~f~mtG~R 319 (527)
T PRK09275 247 LVNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYGTFVDD-----FRSLFAV--LPYNTILVYSFSKYFGATGWR 319 (527)
T ss_pred EeCCcCCcCCCCCHHHHHHHHHHHHhcCCCcEEEECCCChhhccc-----ccCHHHh--CCCCEEEEeehhhhccCcHhH
Confidence 99999999999999999999999964 59999999999999853 2233332 246999999999999999999
Q ss_pred ceEEEEEcCCchhHHHHHHHH--------------------------------HHHHhccccCCChHHHHHHHHHhCChh
Q psy14428 394 VGTFSVLTPTSDETERIMSQL--------------------------------KILIRGFYSNPPIHGARIVTEILSDPK 441 (583)
Q Consensus 394 iG~lv~~~p~~~~~~~li~~l--------------------------------~~~~~~~~~~~s~~~q~~~~~~l~~~~ 441 (583)
+||+++ |+++.++++++.+ +++..+...++|.+.|.+++.
T Consensus 320 lG~i~~--~~~~v~~~~i~~l~~~~~~~~~~ry~~~~~~p~~~~fidrlvad~~~v~~~~t~~~s~p~Q~a~al------ 391 (527)
T PRK09275 320 LGVIAL--HEDNVFDKLIAKLPEEKKKELDKRYSSLTTDPEKLKFIDRLVADSRQVALNHTAGLSTPQQVQMAL------ 391 (527)
T ss_pred Hhhhhc--CchhHHHHHHHhccHHHHHHHHhhhhhccCCcchhhhHHHHHHHHHHHHHhhccCCCCHHHHHHHH------
Confidence 999999 7543333344444 233344444555555544210
Q ss_pred hhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc
Q psy14428 442 LKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDH 521 (583)
Q Consensus 442 ~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~ 521 (583)
|....++... .+.++++++.++++|+.+.+.| +. .+..
T Consensus 392 -------------------------------~~~~all~~~------~~~~~~~~~~~~~Rr~~l~~~L---g~--~~~~ 429 (527)
T PRK09275 392 -------------------------------FSLFALLDEE------DAYKKAMKDIIRRRYKALYEGL---GL--PEPE 429 (527)
T ss_pred -------------------------------HHHHHHHhCc------hHHHHHHHHHHHHHHHHHHHHc---CC--CCcC
Confidence 0011111110 1236678888899999998887 21 1334
Q ss_pred ccccccceeecCCCh
Q psy14428 522 ITNQKGMFCYTGLSA 536 (583)
Q Consensus 522 ~~~~~g~f~~~~l~~ 536 (583)
..+++++|.|.+++.
T Consensus 430 ~~p~g~fY~~~di~~ 444 (527)
T PRK09275 430 DPNNAAYYTLIDLEE 444 (527)
T ss_pred CCCCeeEEEEEEhHH
Confidence 578999999987753
|
|
| >PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-39 Score=338.69 Aligned_cols=308 Identities=21% Similarity=0.240 Sum_probs=249.1
Q ss_pred CccccCCccccCCCCCCCCChHHHHHHHH-HhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCC-CeEEEecCCch
Q psy14428 164 KKMNLGVGAYRGEDGKPYVLPSVKEAERR-IYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDN-RLAIVQGISGS 241 (583)
Q Consensus 164 ~~i~l~~g~~~~~~~~p~~~~~v~~a~~~-~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~-~I~i~~t~G~~ 241 (583)
+.|+|+.|.+....+.+ +++.+.++..+ .........|++..|.++||+++|+++++..++.++++ +|++ ++|++
T Consensus 2 ~~I~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~~--~~G~~ 78 (363)
T PF00155_consen 2 DVINLGSNAPLLLSQNP-PPPAAIKAAIRGAATSSSFLGYPPPQGYPELREAIADFLGRRYGVPVDPEANILV--TSGAQ 78 (363)
T ss_dssp TEEESSSSSTSSTTSSH-HHHHHHHHHHHHHHHHTGCTSSTCTTHHHHHHHHHHHHHHHHHTHHTTGGEGEEE--ESHHH
T ss_pred CEEEEECCCCCCccccc-chHHHHHHHHHHhhcccccccCCCchhhHHHHHHHHHHhhhccCcccccceEEEE--ecccc
Confidence 57899999997654443 44555555444 33334478999999999999999999998888999999 9999 99999
Q ss_pred hHHHHHHHHHHHh-CCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCC-C--CcEEEEeC
Q psy14428 242 GSLRVGTAFLERF-YPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMP-E--RSILFLQT 317 (583)
Q Consensus 242 ~al~l~~~~l~~~-~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~-~--~~~~i~i~ 317 (583)
+++.++ +..+ ..+||+|++++|+|+.+...++..|++++.+++..++++++|++.+++.+++.. + ++++++++
T Consensus 79 ~~~~~~---~~~~~~~~~~~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~ 155 (363)
T PF00155_consen 79 AALFLL---LRLLKINPGDTVLVPDPCYPSYIEAARLLGAEVIPVPLDSENDFHLDPEALEEALDELPSKGPRPKAVLIC 155 (363)
T ss_dssp HHHHHH---HHHHHSSTTSEEEEEESSSTHHHHHHHHTTSEEEEEEEEETTTTEETHHHHHHHHHTSHTTTETEEEEEEE
T ss_pred cchhhh---hhcccccccccceecCCccccccccccccCceeeeccccccccccccccccccccccccccccccceeeec
Confidence 999885 3445 556999999999999999999999999999998445568899999999997642 1 46899999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEE
Q psy14428 318 SSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTF 397 (583)
Q Consensus 318 ~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~l 397 (583)
|||||||.+++.+++++|+++|++++++||+||+|.++.+++. +..+.....+...++|+++||||+||+||+|+||+
T Consensus 156 ~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~~~~~--~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRvG~i 233 (363)
T PF00155_consen 156 NPNNPTGSVLSLEELRELAELAREYNIIIIVDEAYSDLIFGDP--DFGPIRSLLDEDDNVIVVGSLSKSFGLPGLRVGYI 233 (363)
T ss_dssp SSBTTTTBB--HHHHHHHHHHHHHTTSEEEEEETTTTGBSSSS--HTHHHHGHHTTTSTEEEEEESTTTTTSGGGTEEEE
T ss_pred ccccccccccccccccchhhhhcccccceeeeeceeccccCCC--ccCcccccccccccceeeeeccccccccccccccc
Confidence 9999999999999999999999999999999999999999862 33332333455567999999999999999999999
Q ss_pred EEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHH
Q psy14428 398 SVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTE 477 (583)
Q Consensus 398 v~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~ 477 (583)
++ + +++++.++........ +.+.|.++..++.+..
T Consensus 234 ~~--~-----~~~~~~l~~~~~~~~~--~~~~~~~~~~~l~~~~------------------------------------ 268 (363)
T PF00155_consen 234 VA--P-----PELIERLRRFQRSGLS--SSPMQAAAAAALSDPE------------------------------------ 268 (363)
T ss_dssp EE--E-----HHHHHHHHHHHHHTTS--SHHHHHHHHHHHHHHH------------------------------------
T ss_pred cc--h-----hhhhhhhhhccccccc--cchhhHHHHHhhhccc------------------------------------
Confidence 99 6 5899999887765544 8888888888776532
Q ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCChh
Q psy14428 478 ILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSAS 537 (583)
Q Consensus 478 ~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~~ 537 (583)
...++++++++++.++++.+.+.|++.+ +.+..+++|+|.|..++..
T Consensus 269 ---------~~~~~~~~~~~~l~~~~~~l~~~L~~~~----~~~~~~~~~~~~~~~~~~~ 315 (363)
T PF00155_consen 269 ---------LVEKWLEELRERLRENRDLLREALEEIG----ITVLPPEAGFFLWVRLDPN 315 (363)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHHHHTT----SEEEHHSBSSEEEEEESHH
T ss_pred ---------ccccccccchhhHHHHHHHHHHHHHHhh----hheeeccCccEEEEEcccc
Confidence 1122467788888999999999998874 6677788999999988775
|
On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A .... |
| >TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=335.99 Aligned_cols=288 Identities=17% Similarity=0.133 Sum_probs=211.9
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccC----CCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEe
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKN----LDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQ 236 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~----~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~ 236 (583)
.+++.++|+.|++... +++.+.+++.+.+.+. ...+|.|..|.++||+++|+++.+. .+++++|++
T Consensus 31 ~~~~~i~l~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~Y~p~~g~~~lr~aia~~~~~~---~~~~d~I~i-- 100 (402)
T TIGR03542 31 PSADIIRLGIGDTTQP-----LPASVIEAFHNAVDELASEETFRGYGPEQGYPFLREAIAENDYRG---RIDPEEIFI-- 100 (402)
T ss_pred CCCCeEEcCCCCCCCC-----CCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHhc---CCCHHHEEE--
Confidence 3567899999987532 4577777777666541 2357999999999999999987543 288999999
Q ss_pred cCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCC-----------eEEEEecccCCCCCCChhhHHHHHH
Q psy14428 237 GISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRL-----------NVGAYRYFDNKTNGLDFAGMMEDIK 305 (583)
Q Consensus 237 t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~-----------~~~~v~~~d~~~~g~d~~~l~~~l~ 305 (583)
|+|+++++.++ +..+ .+||+|++++|+|..|..+++..|+ +++.+|+ +++ .+++++. .+
T Consensus 101 t~Ga~~al~~l---~~l~-~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~-~~~-~~~~~~~-~~--- 170 (402)
T TIGR03542 101 SDGAKCDVFRL---QSLF-GSDNTVAVQDPVYPAYVDSNVMAGRAGVLDDDGRYSKITYLPC-TKE-NNFIPDL-PE--- 170 (402)
T ss_pred CCCcHHHHHHH---HHhc-CCCCEEEEeCCCCcchHHHHHHcCCccccccccccceEEEeec-chh-hCCCCCc-cc---
Confidence 99999999874 3333 5699999999999999999999999 9999998 432 1233221 11
Q ss_pred cCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcc
Q psy14428 306 AMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSK 385 (583)
Q Consensus 306 ~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK 385 (583)
..++++++++|||||||.++|.+++++|+++|++++++||+||+|.+|.+++ ..+.++..+....+++|+++||||
T Consensus 171 --~~~~~~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~--~~~~~~~~~~~~~~~vi~~~SfSK 246 (402)
T TIGR03542 171 --EPKIDIIYLCSPNNPTGTVLTKEQLKELVDYANEHGSLILFDAAYSAFISDP--SLPHSIFEIPGAKECAIEFRSFSK 246 (402)
T ss_pred --cCCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEEchhhhhccCC--CCCcchhhCCCCcccEEEEecCcc
Confidence 2467888899999999999999999999999999999999999999998865 122344443222468999999999
Q ss_pred cccccCccceEEEEEcCCchhHHHHH--------HHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHH
Q psy14428 386 NMGLYGERVGTFSVLTPTSDETERIM--------SQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLK 457 (583)
Q Consensus 386 ~~~l~GlRiG~lv~~~p~~~~~~~li--------~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~ 457 (583)
.||+||+|+||+++ | ++++ +.+.+.......++|.++|.++..++.++.++... +.++.+..++
T Consensus 247 ~~g~pGlRiG~~i~--~-----~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~-~~~~~~~~~~ 318 (402)
T TIGR03542 247 TAGFTGVRLGWTVV--P-----KELTYADGHSVIQDWERRQCTKFNGASYPVQRAAEAAYAGEGLQPIL-EAISYYMENA 318 (402)
T ss_pred ccCCCCcceEEEEe--c-----HHHhhcchhhHHHHHHHHhhhcccCCCHHHHHHHHHHHcCcchhHHH-HHHHHHHHHH
Confidence 99999999999999 7 3555 23322233445578999999999999875543222 2222222222
Q ss_pred HH----Hhh-ccC-CCccchhhHHHHhcC
Q psy14428 458 IL----IRG-FYS-NPPIHGARIVTEILS 480 (583)
Q Consensus 458 ~~----~r~-~~~-~~p~~g~~i~~~~l~ 480 (583)
+. ++. .+. ..|.+|+|+|+++..
T Consensus 319 ~~~~~~L~~~~~~~~~~~~~~f~~v~l~~ 347 (402)
T TIGR03542 319 RILRKALEAAGFKVYGGEHAPYLWVKTPE 347 (402)
T ss_pred HHHHHHHHhcCceecCCCceeEEEEECCC
Confidence 22 221 233 345688899998864
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). |
| >KOG0256|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-38 Score=311.16 Aligned_cols=317 Identities=16% Similarity=0.203 Sum_probs=253.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhCCCC--CCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHh
Q psy14428 199 DHEYANIGGDAKFCKLAAQLAYGEDF--PAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCT 276 (583)
Q Consensus 199 ~~~Y~~~~G~~~Lr~aia~~~~~~~g--~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~ 276 (583)
...|.+..|.+.+|+++|+++.+.+| +.++|+++++ |+|++.+.+.+ +-.+++|||..+||.|.|+++..-++
T Consensus 114 la~fqdy~Gl~~frqa~A~Fm~~~r~~~v~fdP~~~Vv--~~G~T~ane~l---~fcLadpgdafLvPtPyY~gfdrdl~ 188 (471)
T KOG0256|consen 114 LAMFQDYHGLPSFRQAVAEFMERARGNRVKFDPERVVV--TNGATSANETL---MFCLADPGDAFLVPTPYYPGFDRDLR 188 (471)
T ss_pred HhhcccccCchHHHHHHHHHHHHHhCCCCccCccceEE--ecccchhhHHH---HHHhcCCCceeeecCCCCCcccccce
Confidence 45688999999999999999987665 6789999999 99999999985 34477789999999999999988777
Q ss_pred h-cCCeEEEEecccCCCCCCChhhHHHHHHcC---CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccC
Q psy14428 277 D-SRLNVGAYRYFDNKTNGLDFAGMMEDIKAM---PERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAY 352 (583)
Q Consensus 277 ~-~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~---~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y 352 (583)
. .|+++++|.+...+++.++.+++|++++++ ..+.+-+++.||+||.|.+++++++..++++|.++++.+|+||+|
T Consensus 189 ~rTgveivpv~c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kniHvI~DEIy 268 (471)
T KOG0256|consen 189 WRTGVEIVPVHCSSSNGFQITVEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRKNIHVISDEIY 268 (471)
T ss_pred eccCceEEEEEeecCCCccccHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhcceEEEeehhh
Confidence 6 489999999955566889999999998765 567889999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCchHHHHHHHH----hcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChH
Q psy14428 353 LGLTSGDFDKDAFSLRYFAK----EVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIH 428 (583)
Q Consensus 353 ~~l~~~~~~~~~~~~~~~~~----~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~ 428 (583)
..-+|+. ....|+.+... ..++|.++.|+||.||+||+|+|.+.. .| +.++.+.++. ..+..+|+.
T Consensus 269 a~sVF~~--~~F~Sv~ev~~~~~~~~~rvHivyslSKD~GlpGfRvGviYS--~n----e~VvsaA~km--ssf~~vSs~ 338 (471)
T KOG0256|consen 269 AGSVFDK--SEFRSVLEVRKDPHLDPDRVHIVYSLSKDFGLPGFRVGVIYS--NN----EDVVSAATKM--SSFGLVSSQ 338 (471)
T ss_pred cccccCc--cCceEHHHHhhccccCCCcEEEEEEeccccCCCceEEEEEEe--cC----hHHHHHHHHH--hhccCCcHH
Confidence 9999987 34555555432 357899999999999999999999998 55 4788877765 346678999
Q ss_pred HHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14428 429 GARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKS 508 (583)
Q Consensus 429 ~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~ 508 (583)
.|..++.+|.|.++.+ +.+++.++|++.+.+.+.+
T Consensus 339 tQ~~la~LLSD~~f~~---------------------------------------------~yl~en~~Rl~~rh~~~~~ 373 (471)
T KOG0256|consen 339 TQYLLASLLSDEEFTR---------------------------------------------EYLRENNKRLRIRHRYIVE 373 (471)
T ss_pred HHHHHHHHhchHHHHH---------------------------------------------HHHHHHHHHHHHHHHHHHh
Confidence 9999999998854322 2266778888999999999
Q ss_pred HHHhcCCCCCcccccccccceeecCCC----hhhhhhhhhhhhHHHHHHHHhhcCCCccccccccCCcce--eecCCCCC
Q psy14428 509 KILDKGSKKNWDHITNQKGMFCYTGLS----ASQGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMF--CYTGLSAS 582 (583)
Q Consensus 509 ~L~~~~~pg~~~~~~~~~g~f~~~~l~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 582 (583)
.|+++++| +...++|+|+|.++. ....+. ...|.+.+-..++-.-|++.-.|+ ++-||| ||+-++++
T Consensus 374 gLk~lgI~----cl~s~AGlF~wvDlr~lL~s~tfe~--El~Lw~~i~~~vklnlSpG~s~~C-~EpGWFRvcFAn~~~~ 446 (471)
T KOG0256|consen 374 GLKALGIP----CLKSNAGLFCWVDLRKLLTSLTFEG--ELELWERILDNVKLNLSPGSSCHC-HEPGWFRVCFANMSEE 446 (471)
T ss_pred hHHhcCCc----eeecCCeeEEEEEhHHhcCcCChHH--HHHHHHHHHHhhccccCCCCccee-cCCCeEEEEeccCCHH
Confidence 99999865 889999999997643 222211 123455555555555566655554 444898 67766654
|
|
| >PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-38 Score=330.49 Aligned_cols=285 Identities=16% Similarity=0.129 Sum_probs=227.2
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCC-CCCCCeEEEecCC
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPA-FKDNRLAIVQGIS 239 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~-~~~~~I~i~~t~G 239 (583)
...+.++|+.|+|..+ +++.+.+++.+... ..+|+++.|.++||+++|+|+.+.+|+. +++++|++ |+|
T Consensus 25 ~~~~~i~l~~~~p~~~-----~~~~~~~~~~~~~~---~~~Y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~~I~i--t~G 94 (364)
T PRK07865 25 HPDGIVDLSVGTPVDP-----VPPVIQEALAAAAD---APGYPTTAGTPELREAIVGWLARRRGVTGLDPAAVLP--VIG 94 (364)
T ss_pred cCCCEEEcCCCCCCCC-----CCHHHHHHHHHHHh---hCCCCCccCCHHHHHHHHHHHHHHcCCCCCCcccEEE--ccC
Confidence 3456899999987521 34677777766542 3579999999999999999999888987 99999999 999
Q ss_pred chhHHHHHHHHHHHh-CCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCC
Q psy14428 240 GSGSLRVGTAFLERF-YPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTS 318 (583)
Q Consensus 240 ~~~al~l~~~~l~~~-~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~ 318 (583)
+++++.++ +..+ +.+||.|++++|+|+.|...++..|++++.++. ++. +. ..++++++++|
T Consensus 95 ~~~~i~~~---~~~l~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~---------~~~----l~--~~~~~~v~~~~ 156 (364)
T PRK07865 95 SKELVAWL---PTLLGLGPGDVVVIPELAYPTYEVGARLAGATVVRADS---------LTE----LG--PQRPALIWLNS 156 (364)
T ss_pred hHHHHHHH---HHHHcCCCCCEEEECCCCcccHHHHHHhcCCEEEecCC---------hhh----CC--cccceEEEEcC
Confidence 99999985 3334 567999999999999999999999999887742 111 11 14678888899
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHH--HHhcCcEEEEecCcccccccCccceE
Q psy14428 319 SHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYF--AKEVGQLCLAQSFSKNMGLYGERVGT 396 (583)
Q Consensus 319 p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~--~~~~~~vi~i~S~SK~~~l~GlRiG~ 396 (583)
||||||.+++.+++++|+++|++++++||+||+|.++.+++. ....+... ....+++|+++||||+|++||+|+||
T Consensus 157 p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~ 234 (364)
T PRK07865 157 PSNPTGRVLGVDHLRKVVAWARERGAVVASDECYLELGWDAE--PVSILDPRVCGGDHTGLLAVHSLSKQSNLAGYRAGF 234 (364)
T ss_pred CCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhhhccCCC--CCccccccccCCccceEEEEeechhccCCCceeeEE
Confidence 999999999999999999999999999999999999988651 11111110 01246899999999999999999999
Q ss_pred EEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHH
Q psy14428 397 FSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVT 476 (583)
Q Consensus 397 lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~ 476 (583)
+++ | +++++++...+.....+++.+.|.++..++++..
T Consensus 235 i~~--~-----~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~----------------------------------- 272 (364)
T PRK07865 235 VAG--D-----PALVAELLEVRKHAGMMVPAPVQAAMVAALGDDA----------------------------------- 272 (364)
T ss_pred Eec--C-----HHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCHH-----------------------------------
Confidence 998 7 5899999988777777889999999988886521
Q ss_pred HhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCC
Q psy14428 477 EILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLS 535 (583)
Q Consensus 477 ~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~ 535 (583)
+++++++.+.++|+.+.+.|++.+ +.+..+++|+|.|..++
T Consensus 273 --------------~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~ 313 (364)
T PRK07865 273 --------------HVREQRERYARRRAVLRPALEAAG----FRVDHSEAGLYLWATRG 313 (364)
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHcC----CcccCCCccEEEEEeCC
Confidence 133445566778888888888753 55667889999998764
|
|
| >COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=307.92 Aligned_cols=306 Identities=14% Similarity=0.118 Sum_probs=254.1
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
.+++++.|++.++|.. .+|.+.+|+++..+.+ .++|+ .+..++-++|++|.+++++..+.++.|++ ++|.
T Consensus 23 g~~DvlPmWVADMDf~-----~pp~i~~Al~~rvdhG-vfGY~--~~~~~~~~ai~~w~~~r~~~~i~~e~i~~--~p~V 92 (388)
T COG1168 23 GNEDVLPMWVADMDFP-----TPPEIIEALRERVDHG-VFGYP--YGSDELYAAIAHWFKQRHQWEIKPEWIVF--VPGV 92 (388)
T ss_pred CCCCcceeeeecccCC-----CCHHHHHHHHHHHhcC-CCCCC--CCCHHHHHHHHHHHHHhcCCCCCcceEEE--cCcc
Confidence 4579999999999854 6689999999988765 67886 78889999999999999999999999999 9999
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCC--CCCChhhHHHHHHcCCCCcEEEEeCC
Q psy14428 241 SGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKT--NGLDFAGMMEDIKAMPERSILFLQTS 318 (583)
Q Consensus 241 ~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~--~g~d~~~l~~~l~~~~~~~~~i~i~~ 318 (583)
..++.+ +++.+.++||.|++.+|.|+++...++..|.+++..|+. +++ +.+|++.+++++. ..+.+++++||
T Consensus 93 Vpgi~~---~I~~~T~~gd~Vvi~tPvY~PF~~~i~~n~R~~i~~pL~-~~~~~y~iD~~~LE~~~~--~~~vkl~iLCn 166 (388)
T COG1168 93 VPGISL---AIRALTKPGDGVVIQTPVYPPFYNAIKLNGRKVIENPLV-EDDGRYEIDFDALEKAFV--DERVKLFILCN 166 (388)
T ss_pred hHhHHH---HHHHhCcCCCeeEecCCCchHHHHHHhhcCcEEEecccc-ccCCcEEecHHHHHHHHh--cCCccEEEEeC
Confidence 999998 567788899999999999999999999999999999995 333 5569999999985 45579999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHH-HhcCcEEEEecCcccccccCccceEE
Q psy14428 319 SHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFA-KEVGQLCLAQSFSKNMGLYGERVGTF 397 (583)
Q Consensus 319 p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~-~~~~~vi~i~S~SK~~~l~GlRiG~l 397 (583)
||||||.++++||+.+|.++|++||+.||+||+++|+.+.+. .+.++.++. .-.+++|.+.|.||+|+++|++++++
T Consensus 167 PHNP~Grvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~--~h~~~a~ls~~~a~~~it~~saSKtFNlaGL~~a~~ 244 (388)
T COG1168 167 PHNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGH--KHIPFASLSERFADNSITLTSASKTFNLAGLKCAYI 244 (388)
T ss_pred CCCCCCccccHHHHHHHHHHHHHcCCEEEeecccccccccCC--CccchhhcChhhhcceEEEeeccccccchhhhheeE
Confidence 999999999999999999999999999999999999999883 444454432 23478999999999999999999999
Q ss_pred EEEcCCchhHHHH-HHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHH
Q psy14428 398 SVLTPTSDETERI-MSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVT 476 (583)
Q Consensus 398 v~~~p~~~~~~~l-i~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~ 476 (583)
+. +|+ ++ .+-++++++....++|.++..|...+++++
T Consensus 245 Ii--~n~----~lr~~~~~~l~~~~~~~~n~lg~~A~~aAY~~G------------------------------------ 282 (388)
T COG1168 245 II--SNR----ELRAKFLKRLKRNGLHGPSALGIIATEAAYNQG------------------------------------ 282 (388)
T ss_pred Ee--cCH----HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhc------------------------------------
Confidence 99 874 44 333334455667788888888887777653
Q ss_pred HhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCChhhhh
Q psy14428 477 EILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSASQGM 540 (583)
Q Consensus 477 ~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~~~~~ 540 (583)
+.| |.++.+-+...|+.+.+.|++.. |+ ..+..|+|.+..|.++.+-.+.
T Consensus 283 ---------~~W---Ld~L~~yl~~N~~~~~~~l~~~~-P~-v~v~~p~gTYL~WLD~r~l~l~ 332 (388)
T COG1168 283 ---------EPW---LDELLEYLKDNRDYVADFLNKHL-PG-VKVTEPQGTYLAWLDCRELGLD 332 (388)
T ss_pred ---------hHH---HHHHHHHHHHHHHHHHHHHHhhC-CC-cEEecCCCceeeeeeccccCCC
Confidence 245 45555666788889999888864 43 5678899999999876554443
|
|
| >PRK07568 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=331.60 Aligned_cols=297 Identities=15% Similarity=0.141 Sum_probs=238.9
Q ss_pred CCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchh
Q psy14428 163 PKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSG 242 (583)
Q Consensus 163 ~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~ 242 (583)
.+.++|+.|.++.+ +++.+.+++.+... ...+|++..|.++||+++++++. .+++.+++++|++ |+|+++
T Consensus 30 ~~~i~l~~~~~~~~-----~~~~~~~a~~~~~~--~~~~Y~~~~g~~~lr~~ia~~~~-~~~~~~~~~~i~~--t~G~~~ 99 (397)
T PRK07568 30 IKVYHLNIGQPDIK-----TPEVFFEAIKNYDE--EVLAYSHSQGIPELREAFAKYYK-KWGIDVEPDEILI--TNGGSE 99 (397)
T ss_pred CCEEEecCCCCCCC-----CCHHHHHHHHHHhc--CCcCcCCCCCCHHHHHHHHHHHH-HhCCCCCcceEEE--cCChHH
Confidence 46789999998532 45788888776553 25789999999999999999998 5788899999999 999999
Q ss_pred HHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCC-CCC-CChhhHHHHHHcCCCCcEEEEeCCCC
Q psy14428 243 SLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNK-TNG-LDFAGMMEDIKAMPERSILFLQTSSH 320 (583)
Q Consensus 243 al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~-~~g-~d~~~l~~~l~~~~~~~~~i~i~~p~ 320 (583)
++.++ +..++.+||+|++++|+|..+...++..|++++.+++ +.+ ++. .+++.+++.+ .+++++++++|||
T Consensus 100 al~~~---~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~-~~~~g~~~~~~~~l~~~~---~~~~~~v~i~~p~ 172 (397)
T PRK07568 100 AILFA---MMAICDPGDEILVPEPFYANYNGFATSAGVKIVPVTT-KIEEGFHLPSKEEIEKLI---TPKTKAILISNPG 172 (397)
T ss_pred HHHHH---HHHhcCCCCEEEEecCCCccHHHHHHHcCCEEEEeec-CcccCCCCCCHHHHHHhc---CccceEEEEECCC
Confidence 99985 3445677999999999999999999999999999998 432 222 2457777766 5678899999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEE
Q psy14428 321 NPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVL 400 (583)
Q Consensus 321 NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~ 400 (583)
||||.+++.+++++|+++|++++++||+||+|.+|.+++ ....++.++.+..+++|+++||||+||+||+|+||+++
T Consensus 173 NPtG~~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~--~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~~~~- 249 (397)
T PRK07568 173 NPTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDG--LKYTSALSLEGLEDRVIIIDSVSKRYSACGARIGCLIS- 249 (397)
T ss_pred CCCCccCCHHHHHHHHHHHHHCCcEEEEeccchhcccCC--CCccChhhcCCCcCCEEEEecchhhccCCCcceEEEec-
Confidence 999999999999999999999999999999999999875 23445555433357999999999999999999999998
Q ss_pred cCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHhcC
Q psy14428 401 TPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEILS 480 (583)
Q Consensus 401 ~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~l~ 480 (583)
++ +++++++.+.... ..++|.+.|.+++.++++..
T Consensus 250 -~~----~~~~~~~~~~~~~-~~~~s~~~q~~~~~~l~~~~--------------------------------------- 284 (397)
T PRK07568 250 -KN----KELIAAAMKLCQA-RLSPPTLEQIGAAALLDTPE--------------------------------------- 284 (397)
T ss_pred -CC----HHHHHHHHHHhhc-cCCCCcHHHHHHHHHhhCCH---------------------------------------
Confidence 65 4688877765443 45789999999988886421
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCCh
Q psy14428 481 DPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSA 536 (583)
Q Consensus 481 ~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~ 536 (583)
.++++++..+.++|+.+.+.|++. +| +.+..+++|+|.|..++.
T Consensus 285 ---------~~~~~~~~~~~~~~~~l~~~L~~~--~~-~~~~~p~g~~~~~~~l~~ 328 (397)
T PRK07568 285 ---------SYFDEVREEYKKRRDILYEELNKI--PG-VVCEKPKGAFYIIAKLPV 328 (397)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHhcC--CC-ceecCCCcceEEEEecCC
Confidence 124556667788899999999775 23 455678999999988764
|
|
| >PRK01533 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-38 Score=330.22 Aligned_cols=280 Identities=13% Similarity=0.108 Sum_probs=220.4
Q ss_pred CCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCch
Q psy14428 162 HPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGS 241 (583)
Q Consensus 162 ~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~ 241 (583)
..+.|+|+.|+++. + +++.+.+++.+.... . .|.|..|.++||++||+|++ +++++|++ |+|++
T Consensus 28 ~~~~i~l~~nen~~--~---~~~~v~~a~~~~~~~--~-~~Yp~~g~~~Lr~aia~~~~------~~~~~I~v--t~Gs~ 91 (366)
T PRK01533 28 DHSFVKLASNENPF--G---CSPRVLDELQKSWLD--H-ALYPDGGATTLRQTIANKLH------VKMEQVLC--GSGLD 91 (366)
T ss_pred CCceEEeCCCCCCC--C---CCHHHHHHHHHHHHh--c-CcCCCCCHHHHHHHHHHHhC------CCcceEEE--CCCHH
Confidence 35679999999752 2 557777777665433 2 34467899999999999983 67899999 99999
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCC
Q psy14428 242 GSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHN 321 (583)
Q Consensus 242 ~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~N 321 (583)
+++.++ +..++.+||+|++++|+|+.|...++..|++++.+|+ +. +++|++.+++.+ .++++++++|||||
T Consensus 92 e~i~~~---~~~l~~~gd~vlv~~P~y~~~~~~~~~~g~~v~~v~~-~~--~~~d~~~l~~~~---~~~~~~v~i~~P~N 162 (366)
T PRK01533 92 EVIQII---SRAVLKAGDNIVTAGATFPQYRHHAIIEGCEVKEVAL-NN--GVYDLDEISSVV---DNDTKIVWICNPNN 162 (366)
T ss_pred HHHHHH---HHHhcCCCCEEEEcCCcHHHHHHHHHHcCCEEEEeec-CC--CCcCHHHHHHHh---CcCCcEEEEeCCCC
Confidence 999985 4456677999999999999999999999999999998 43 579999998877 45678899999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEc
Q psy14428 322 PTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLT 401 (583)
Q Consensus 322 PTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~ 401 (583)
|||.+++.+++++|+++|++++ ++|+||+|.+|.+++. ..+++. ..+..+++|+++||||+||+||+|+||+++
T Consensus 163 PTG~~~~~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~~~--~~~~~~-~~~~~~~vi~~~SfSK~~~l~GlRiG~~i~-- 236 (366)
T PRK01533 163 PTGTYVNDRKLTQFIEGISENT-LIVIDEAYYEYVTAKD--FPETLP-LLEKHKNILVLRTFSKAYGLASFRVGYAVG-- 236 (366)
T ss_pred CCCCCcCHHHHHHHHHhCCCCC-EEEEEccHHHhhcccc--CcchhH-HhccCCCEEEEeCchHHhcChHHHHhHHhC--
Confidence 9999999999999999998876 5667999999987541 122232 234567999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhh-HHHHHHHHHHHHhh-ccCCCccchhhHHHHhc
Q psy14428 402 PTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDE-TERIMSQLKILIRG-FYSNPPIHGARIVTEIL 479 (583)
Q Consensus 402 p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~-~~~~~~~l~~~~r~-~~~~~p~~g~~i~~~~l 479 (583)
+ +++++++.+... ..++|.++|.++..+++++.+.++... .++..+.+...++. .+...|++|+|+|+.+.
T Consensus 237 ~-----~~~~~~l~~~~~--~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~r~~~~~~l~~~g~~~~~~~~nf~~~~~~ 309 (366)
T PRK01533 237 H-----EELIEKLNVVRL--PFNVSSLAQKAATIAFGDDEFIEEIVRVNTEGLRQYESFCKENEIPFYQSQTNFIFLPVE 309 (366)
T ss_pred C-----HHHHHHHHHhcC--CCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCCcCcEEEEeCC
Confidence 7 589999987653 468999999999999998665544433 22223333333332 35566778999999864
|
|
| >TIGR03539 DapC_actino succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=324.94 Aligned_cols=287 Identities=17% Similarity=0.105 Sum_probs=227.9
Q ss_pred CCCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCC-CCCCCeEEEecC
Q psy14428 160 DPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPA-FKDNRLAIVQGI 238 (583)
Q Consensus 160 ~~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~-~~~~~I~i~~t~ 238 (583)
++.+..++|+.|+|..+ +++.+.+++.+... ...|+++.|.++||+++++|+++++|+. +++++|++ |+
T Consensus 18 ~~~~~~i~l~~~~p~~~-----~~~~~~~~~~~~~~---~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~I~i--t~ 87 (357)
T TIGR03539 18 SHPDGIVDLSVGTPVDP-----VPPLIRAALAAAAD---APGYPQTWGTPELREAIVDWLERRRGVPGLDPTAVLP--VI 87 (357)
T ss_pred hCCCCeEEccCCCCCCC-----CCHHHHHHHHHHHh---hCCCCcccCCHHHHHHHHHHHHHhcCCCCCCcCeEEE--cc
Confidence 35567899999987522 35677777766542 4679999999999999999999988987 99999999 99
Q ss_pred CchhHHHHHHHHHHHh-CCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeC
Q psy14428 239 SGSGSLRVGTAFLERF-YPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQT 317 (583)
Q Consensus 239 G~~~al~l~~~~l~~~-~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~ 317 (583)
|+++++.++ +..+ ..+||.|++++|+|+.+...++..|++++.++. ++. +. ..++++++++
T Consensus 88 G~~~~i~~~---~~~l~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~---------~~~----l~--~~~~~~v~~~ 149 (357)
T TIGR03539 88 GTKELVAWL---PTLLGLGPGDTVVIPELAYPTYEVGALLAGATPVAADD---------PTE----LD--PVGPDLIWLN 149 (357)
T ss_pred ChHHHHHHH---HHHHcCCCCCEEEECCCCcHHHHHHHHhcCCEEeccCC---------hhh----cC--ccCccEEEEe
Confidence 999999985 3334 577999999999999999999999998877632 111 11 2467888899
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHH--HHHhcCcEEEEecCcccccccCccce
Q psy14428 318 SSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRY--FAKEVGQLCLAQSFSKNMGLYGERVG 395 (583)
Q Consensus 318 ~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~--~~~~~~~vi~i~S~SK~~~l~GlRiG 395 (583)
|||||||.+++.+++++|+++|+++|++||+||+|.+|.+++. ....+.. .....+++|+++||||.|++||+|+|
T Consensus 150 ~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~--~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G~R~G 227 (357)
T TIGR03539 150 SPGNPTGRVLSVDELRAIVAWARERGAVVASDECYLELGWEGR--PVSILDPRVCGGDHTGLLAVHSLSKRSNLAGYRAG 227 (357)
T ss_pred CCCCCcCccCCHHHHHHHHHHHHHcCeEEEEecchhhhccCCC--CccceecccCCCccccEEEEeccccccCCCceeEE
Confidence 9999999999999999999999999999999999999988651 1111110 01123689999999999999999999
Q ss_pred EEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHH
Q psy14428 396 TFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIV 475 (583)
Q Consensus 396 ~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~ 475 (583)
|+++ | +++++++.+.......+++.+.|.++..++++..
T Consensus 228 ~~i~--~-----~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~---------------------------------- 266 (357)
T TIGR03539 228 FVAG--D-----PALVAELLTVRKHAGLMVPAPVQAAMVAALGDDG---------------------------------- 266 (357)
T ss_pred EEec--C-----HHHHHHHHHHHhhcccCCCHHHHHHHHHHcCCHH----------------------------------
Confidence 9998 7 5899999888777777899999999988886521
Q ss_pred HHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCCh
Q psy14428 476 TEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSA 536 (583)
Q Consensus 476 ~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~ 536 (583)
++++++..+.++|+.+.+.|++.+ +.+..+++|+|.|..++.
T Consensus 267 ---------------~~~~~~~~~~~~~~~~~~~L~~~g----~~~~~p~~~~~~~~~~~~ 308 (357)
T TIGR03539 267 ---------------HVAEQKARYAARRAQLKPALEKAG----FRIDHSEAGLYLWATRGE 308 (357)
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHHcC----CCCcCCCccEEEEEECCC
Confidence 133445566778888888887753 456678899999987743
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK05764 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-37 Score=327.18 Aligned_cols=300 Identities=15% Similarity=0.192 Sum_probs=246.9
Q ss_pred CCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCch
Q psy14428 162 HPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGS 241 (583)
Q Consensus 162 ~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~ 241 (583)
.+..++|+.|.++.+ +++.+.+++.+.+.+. ...|++..|.+.||+++|+++.+.+|..+++++|++ |+|++
T Consensus 30 ~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~-~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~--~~g~~ 101 (393)
T PRK05764 30 GRDVISLGAGEPDFD-----TPEHIKEAAIEALDDG-KTKYTPAAGIPELREAIAAKLKRDNGLDYDPSQVIV--TTGAK 101 (393)
T ss_pred cCCEEEeCCCCCCCC-----CCHHHHHHHHHHHhcC-CCCcCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEE--eCCcH
Confidence 467899999998632 4578888887777543 457999999999999999999888888899999999 99999
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccC-CCCCCChhhHHHHHHcCCCCcEEEEeCCCC
Q psy14428 242 GSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDN-KTNGLDFAGMMEDIKAMPERSILFLQTSSH 320 (583)
Q Consensus 242 ~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~-~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~ 320 (583)
+++.++ +..++.+||.|++++|+|..+..+++..|++++.+++ ++ +++.+|++.+++.+ .+++++++++|||
T Consensus 102 ~a~~~~---~~~~~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~-~~~~~~~~d~~~l~~~l---~~~~~~v~~~~p~ 174 (393)
T PRK05764 102 QALYNA---FMALLDPGDEVIIPAPYWVSYPEMVKLAGGVPVFVPT-GEENGFKLTVEQLEAAI---TPKTKALILNSPS 174 (393)
T ss_pred HHHHHH---HHHhcCCCCEEEecCCCCcchHHHHHHcCCEEEEEec-CcccCCcCCHHHHHHhh---CccceEEEEECCC
Confidence 999885 4455677999999999999999999999999999998 53 34678899998887 4577888999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHH-HHhcCcEEEEecCcccccccCccceEEEE
Q psy14428 321 NPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYF-AKEVGQLCLAQSFSKNMGLYGERVGTFSV 399 (583)
Q Consensus 321 NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~-~~~~~~vi~i~S~SK~~~l~GlRiG~lv~ 399 (583)
||||.+++.+++++|+++|++++++||+||+|.++.+++. ..+++.++ .+..+++|+++||||.+++||+|+||+++
T Consensus 175 NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~--~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~i~~ 252 (393)
T PRK05764 175 NPTGAVYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGA--EFTSIASLSPELRDRTITVNGFSKAYAMTGWRLGYAAG 252 (393)
T ss_pred CCCCcccCHHHHHHHHHHHHHCCcEEEEeccccceeeCCC--CcccHHHcCCCCcCCEEEEecCcccccCccceeEEEec
Confidence 9999999999999999999999999999999999988652 23344444 23457899999999999999999999998
Q ss_pred EcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHhc
Q psy14428 400 LTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEIL 479 (583)
Q Consensus 400 ~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~l 479 (583)
+ +++++++.........+++.+.|.++..++++. .
T Consensus 253 --~-----~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~--~------------------------------------ 287 (393)
T PRK05764 253 --P-----KELIKAMSKLQSHSTSNPTSIAQYAAVAALNGP--Q------------------------------------ 287 (393)
T ss_pred --C-----HHHHHHHHHHHhhcccCCChHHHHHHHHHHcCC--h------------------------------------
Confidence 7 589999998887777889999999988887631 0
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCCh
Q psy14428 480 SDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSA 536 (583)
Q Consensus 480 ~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~ 536 (583)
++++++++.+.++++.+.+.|++. || +.+..+++|+|.|..++.
T Consensus 288 ----------~~~~~~~~~~~~~~~~l~~~L~~~--~g-~~~~~~~g~~~~~~~~~~ 331 (393)
T PRK05764 288 ----------DEVEEMRQAFEERRDLMVDGLNEI--PG-LECPKPEGAFYVFPNVSK 331 (393)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHhhC--CC-CcccCCCcceEEEEeccc
Confidence 123445556677788888888875 33 556678999999987764
|
|
| >PRK06358 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-37 Score=320.87 Aligned_cols=284 Identities=16% Similarity=0.167 Sum_probs=220.4
Q ss_pred CCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchh
Q psy14428 163 PKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSG 242 (583)
Q Consensus 163 ~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~ 242 (583)
++.++|+.+.+.. + +++.+.+++.+.... ..+|++ .|.++||+++|+|+. +++++|++ |+|+++
T Consensus 19 ~~~~~l~~~~~~~--~---~p~~~~~a~~~~~~~--~~~Y~~-~~~~~lr~~ia~~~~------~~~~~i~i--t~Ga~~ 82 (354)
T PRK06358 19 NMILDFSANINPL--G---VPESLKQAITENLDK--LVEYPD-PDYLELRKRIASFEQ------LDLENVIL--GNGATE 82 (354)
T ss_pred cceEEecCCCCCC--C---CCHHHHHHHHHHHHh--hhcCCC-ccHHHHHHHHHHHhC------CChhhEEE--CCCHHH
Confidence 3468999988642 2 357788887776543 566865 578999999999983 78999999 999999
Q ss_pred HHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCC-CCCCChhhHHHHHHcCCCCcEEEEeCCCCC
Q psy14428 243 SLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNK-TNGLDFAGMMEDIKAMPERSILFLQTSSHN 321 (583)
Q Consensus 243 al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~-~~g~d~~~l~~~l~~~~~~~~~i~i~~p~N 321 (583)
++.++ +..+ . +++|++++|+|+.|...++..|++++.+++ +++ ++++| +.+.+.+ .+++++++++||||
T Consensus 83 ~l~~~---~~~~-~-~~~v~i~~P~y~~~~~~~~~~g~~~~~~~~-~~~~~~~~d-~~~~~~~---~~~~~~v~~~~P~N 152 (354)
T PRK06358 83 LIFNI---VKVT-K-PKKVLILAPTFAEYERALKAFDAEIEYAEL-TEETNFAAN-EIVLEEI---KEEIDLVFLCNPNN 152 (354)
T ss_pred HHHHH---HHHh-C-CCcEEEecCChHHHHHHHHHcCCeeEEEeC-ccccCCCcc-HHHHHhh---ccCCCEEEEeCCCC
Confidence 99986 3334 3 368999999999999999999999999998 433 45677 5555555 34678888899999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEc
Q psy14428 322 PTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLT 401 (583)
Q Consensus 322 PTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~ 401 (583)
|||.+++.+++++|+++|++++++||+||+|.+|.+++. ..+++.. .+..++||+++||||+||+||+|+||+++
T Consensus 153 PtG~~~~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~--~~~~~~~-~~~~~~vi~~~S~SK~~gl~G~RiG~lv~-- 227 (354)
T PRK06358 153 PTGQLISKEEMKKILDKCEKRNIYLIIDEAFMDFLEENE--TISMINY-LENFKNLIIIRAFTKFFAIPGLRLGYGLT-- 227 (354)
T ss_pred CCCCccCHHHHHHHHHHHHhcCCEEEEeCcccccCCCcc--chhHHHh-ccCCCCEEEEEechhhccCcchhheeeec--
Confidence 999999999999999999999999999999999998752 2223333 35567999999999999999999999998
Q ss_pred CCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHhcCC
Q psy14428 402 PTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEILSD 481 (583)
Q Consensus 402 p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~l~~ 481 (583)
++ +.+++++.+... ..+++.++|.++..++++..
T Consensus 228 ~~----~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~---------------------------------------- 261 (354)
T PRK06358 228 SN----KNLAEKLLQMRE--PWSINTFADLAGQTLLDDKE---------------------------------------- 261 (354)
T ss_pred CC----HHHHHHHHHhCC--CCcchHHHHHHHHHHhccHH----------------------------------------
Confidence 65 367888887654 45778999999988886521
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCCh
Q psy14428 482 PKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSA 536 (583)
Q Consensus 482 ~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~ 536 (583)
+++++++.+.++|+.+.+.|++. +| +.+..+++ .|.|..++.
T Consensus 262 ---------~~~~~~~~~~~~r~~l~~~L~~~--~~-~~~~~~~g-~f~~~~~~~ 303 (354)
T PRK06358 262 ---------YIKKTIQWIKEEKDFLYNGLSEF--KG-IKVYKPSV-NFIFFKLEK 303 (354)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHhcC--CC-cEEcCCcc-eEEEEEcCc
Confidence 13444555677888888888764 33 44455655 488887764
|
|
| >PRK06836 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-37 Score=324.74 Aligned_cols=257 Identities=21% Similarity=0.249 Sum_probs=207.0
Q ss_pred CCCccccCCccccCCCCCCCCChHHHHHHHHHhccC--CCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCC
Q psy14428 162 HPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKN--LDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGIS 239 (583)
Q Consensus 162 ~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~--~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G 239 (583)
.++.++|+.|.|+. .+++.+.+++.+..... ...+|.+..|.++||+++++++.+.+++.+++++|++ |+|
T Consensus 32 ~~~~~~l~~g~p~~-----~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~--t~G 104 (394)
T PRK06836 32 ADNVFDFSLGNPSV-----PPPAAVKEALRELAEEEDPGLHGYMPNAGYPEVREAIAESLNRRFGTPLTADHIVM--TCG 104 (394)
T ss_pred CCCeEEecCcCCCC-----CCCHHHHHHHHHHHhcCCcCcccCCCCCCCHHHHHHHHHHHHHHhCCCCCcCcEEE--eCC
Confidence 45679999997642 15678888887776542 2577999999999999999999988888999999999 999
Q ss_pred chhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCC
Q psy14428 240 GSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSS 319 (583)
Q Consensus 240 ~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p 319 (583)
+++++.++ +..++.+||.|++++|+|..+...++..|++++.+++ +++++++|++.+++.+ .++++++++++|
T Consensus 105 ~~~al~~~---~~~l~~~gd~Vli~~p~~~~~~~~~~~~g~~v~~v~~-~~~~~~~d~~~l~~~~---~~~~~~v~~~~p 177 (394)
T PRK06836 105 AAGALNVA---LKAILNPGDEVIVFAPYFVEYRFYVDNHGGKLVVVPT-DTDTFQPDLDALEAAI---TPKTKAVIINSP 177 (394)
T ss_pred hHHHHHHH---HHHhcCCCCEEEEcCCCCccHHHHHHHcCCEEEEEec-CCccCcCCHHHHHhhc---CcCceEEEEeCC
Confidence 99999985 4456677999999999999999999999999999999 6655789999998887 457889999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHh------cCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCcc
Q psy14428 320 HNPTGVDLSEDQWRQLAVVVKQ------RHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGER 393 (583)
Q Consensus 320 ~NPTG~~~s~~~~~~l~~~a~~------~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlR 393 (583)
|||||.+++.+++++|+++|++ |+++||+||+|.+|.+++. ..+++. ...+++|+++||||+|++||+|
T Consensus 178 ~NPtG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~--~~~~~~---~~~~~~i~~~S~SK~~~~pGlR 252 (394)
T PRK06836 178 NNPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGA--EVPYIF---KYYDNSIVVYSFSKSLSLPGER 252 (394)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCCC--CCCChH---HccCcEEEEecchhhccCccee
Confidence 9999999999999999999999 8999999999999998752 223332 2356899999999999999999
Q ss_pred ceEEEEEcCCch-hHHHHHHHHHHHHhcc-ccCCChHHHHHHHHHhCC
Q psy14428 394 VGTFSVLTPTSD-ETERIMSQLKILIRGF-YSNPPIHGARIVTEILSD 439 (583)
Q Consensus 394 iG~lv~~~p~~~-~~~~li~~l~~~~~~~-~~~~s~~~q~~~~~~l~~ 439 (583)
+||+++ ++.. ....++..+....+.. ..+++.+.|.++..++++
T Consensus 253 iG~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~ 298 (394)
T PRK06836 253 IGYIAV--NPEMEDADDLVAALVFANRILGFVNAPALMQRVVAKCLDA 298 (394)
T ss_pred eEEEec--CHHHhhhHHHHHHHHHHhhccccccCCHHHHHHHHHHhCC
Confidence 999999 6311 0001122222222222 246788889988888876
|
|
| >KOG0259|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=296.78 Aligned_cols=314 Identities=15% Similarity=0.133 Sum_probs=254.5
Q ss_pred CCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCch
Q psy14428 162 HPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGS 241 (583)
Q Consensus 162 ~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~ 241 (583)
.+.+|.|+.|+|.. ++...+.+...+|+.+.++.+...+|.|..|.+.-|+|+|+|+.+...-.+++++|++ |+|.+
T Consensus 60 ~k~iipl~~GDPsv-~~~~~ts~~a~~Av~~al~Sgk~N~Yaps~G~~~AR~AVAeYl~~~l~~kl~a~DV~l--tsGC~ 136 (447)
T KOG0259|consen 60 KKPILPLGHGDPSV-YPCFRTSQEAEQAVVDALRSGKGNGYAPSVGILPARRAVAEYLNRDLPNKLTADDVVL--TSGCS 136 (447)
T ss_pred CceeccCCCCCCCc-cccccCCHHHHHHHHHHHhcCCCCCcCCccccHHHHHHHHHHhhcCCCCccCcCceEE--eccch
Confidence 34679999999964 4544466788888888888877889999999999999999999888888899999999 99999
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCC
Q psy14428 242 GSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHN 321 (583)
Q Consensus 242 ~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~N 321 (583)
|||+++ +..+.+||..|++|.|+|+.|...+...|.++..+++..+.+|.+|++.+++.+ .++|.++++.||||
T Consensus 137 qAIe~~---i~~LA~p~aNILlPrPGfp~Y~~~a~~~~lEVR~ydlLPe~~weIDL~~veal~---DENT~AivviNP~N 210 (447)
T KOG0259|consen 137 QAIELA---ISSLANPGANILLPRPGFPLYDTRAIYSGLEVRYYDLLPEKDWEIDLDGVEALA---DENTVAIVVINPNN 210 (447)
T ss_pred HHHHHH---HHHhcCCCCceecCCCCCchHHHhhhhcCceeEeecccCcccceechHHHHHhh---ccCeeEEEEeCCCC
Confidence 999995 556677899999999999999999999999999999866678999999998887 78999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEc
Q psy14428 322 PTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLT 401 (583)
Q Consensus 322 PTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~ 401 (583)
|+|.++|.+.+++|++.|+++++.||.||+|.++.|++ .+..++.+|. .--.||.++|+||.|=.||||+||++.
T Consensus 211 PcGnVys~~HL~kiae~A~klgi~vIaDEVY~~~vfg~--~pfvpmg~fs-siVPVitlggisKrW~VPGWRlGWi~~-- 285 (447)
T KOG0259|consen 211 PCGNVYSEDHLKKIAETAKKLGIMVIADEVYGHTVFGD--KPFVPMGKFS-SIVPVITLGGISKRWIVPGWRLGWIAL-- 285 (447)
T ss_pred CCcccccHHHHHHHHHHHHHhCCeEEehhhcceeecCC--CCccchhhcc-ccCceEeecccccccccCCceeeeEEE--
Confidence 99999999999999999999999999999999999998 5677787764 346899999999999999999999999
Q ss_pred CCchh-H--HHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHh
Q psy14428 402 PTSDE-T--ERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEI 478 (583)
Q Consensus 402 p~~~~-~--~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~ 478 (583)
.|+.. + ..+++.+.+..+ ...+++++.|.|+-.+|+.-.
T Consensus 286 hD~~gvf~~~~~~q~~~~~~~-~~~~p~TiiQ~AlP~IL~kTp------------------------------------- 327 (447)
T KOG0259|consen 286 HDPRGVFRDTKVVQGIKNFLD-IIPGPATIIQGALPDILEKTP------------------------------------- 327 (447)
T ss_pred ecccccccchHHHHHHHHHHh-ccCCccHhHHHHhHHHHHhCh-------------------------------------
Confidence 66531 0 123344444432 346788888988888876310
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCChhhh
Q psy14428 479 LSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSASQG 539 (583)
Q Consensus 479 l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~~~~ 539 (583)
+++ .....+-++..-++..+.|++. ||-.-..+|++.||.|..++-+-+
T Consensus 328 -------~ef---F~k~~~~lk~na~l~y~~Lk~I--P~l~cp~kPeg~mylmv~l~~s~~ 376 (447)
T KOG0259|consen 328 -------EEF---FDKKLSFLKSNADLCYSRLKDI--PCLTCPVKPEGCMYLMVKLNLSLF 376 (447)
T ss_pred -------HHH---HHHHHHHHHhhHHHHHHHHhcC--CCcccCcCCCcceEEEeccchhhh
Confidence 000 1112223345666777777763 542226789999999988876644
|
|
| >TIGR03801 asp_4_decarbox aspartate 4-decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-37 Score=327.92 Aligned_cols=356 Identities=13% Similarity=0.048 Sum_probs=239.2
Q ss_pred CccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHH-HHHhCCCCCC-CCCC--CeEEEecCC
Q psy14428 164 KKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAA-QLAYGEDFPA-FKDN--RLAIVQGIS 239 (583)
Q Consensus 164 ~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia-~~~~~~~g~~-~~~~--~I~i~~t~G 239 (583)
+.|+++.|+++.+ +++.+.++...+.. .+|+++.|.+++|++++ +|+.+..+.. .+++ +|++ |+|
T Consensus 95 ~~i~l~~g~p~~~-----~~~~~~~~~~~~~~----~~Y~~p~g~~~~~e~iv~~y~~~~~~~~~~~~~~~~V~i--t~G 163 (521)
T TIGR03801 95 DIISYVIDQLGFD-----PDAFLYEMCDGIIG----DNYPVPDRMLPHSEKIVHQYLIQEMCGNKPPPGEFDLFA--VEG 163 (521)
T ss_pred HHHhhcCCCCCCC-----CCHHHHHHHHHhhc----CCCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEE--eCC
Confidence 4589999999643 33555554444432 25988888888888887 4666554433 3444 8999 999
Q ss_pred chhHHHHHHHHH--HHhCCCCCEEEEcCCCChhhHHHHhhc--CCeEEEEecccCC-C-----CCCChhhHHHHHHcCCC
Q psy14428 240 GSGSLRVGTAFL--ERFYPGVKTVYFPTPTWNGHVRFCTDS--RLNVGAYRYFDNK-T-----NGLDFAGMMEDIKAMPE 309 (583)
Q Consensus 240 ~~~al~l~~~~l--~~~~~~gd~Vlv~~P~y~~~~~~~~~~--G~~~~~v~~~d~~-~-----~g~d~~~l~~~l~~~~~ 309 (583)
+++|+.++...+ ..+++|||+|++++|+|+.|..+++.. |++++.++. +++ + +.+|++.+++.+ .+
T Consensus 164 at~al~~~~~~l~~~~ll~pGD~Vlv~~P~y~~y~~~~~l~~~g~~vv~i~~-~~~~~~g~~~~~~d~~~l~~~~---~~ 239 (521)
T TIGR03801 164 GTAAMCYIFDSLKANELLKKGDKIALMTPIFTPYLEIPELPRYDFEVVRIKA-DEMTEDGTHTWQYPDKELEKLR---DP 239 (521)
T ss_pred HHHHHHHHHHHHhHhhcCCCCCEEEEeCCCcHHHHHHHHHhcCCcEEEEeec-ccccccccccCCCCHHHHHHhc---CC
Confidence 999999864332 126778999999999999999997775 678888887 432 2 668888887654 57
Q ss_pred CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhc--CeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccc
Q psy14428 310 RSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQR--HLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNM 387 (583)
Q Consensus 310 ~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~--~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~ 387 (583)
++++++++|||||||.++|.+++++|+++|++| +++||+||+|.+|.++ ..++.+. ..+++|+++||||+|
T Consensus 240 ~~kai~l~nP~NPTG~vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~-----~~sl~~~--~~~~vI~v~SfSK~f 312 (521)
T TIGR03801 240 SIKALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTDDVYGTFVDD-----FRSLFAE--LPYNTIGVYSFSKYF 312 (521)
T ss_pred CCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEECCCchhhccc-----ccchhhh--CCCCEEEEEcchhhc
Confidence 889999999999999999999999999999986 9999999999999863 2233332 246899999999999
Q ss_pred cccCccceEEEEEcCCchhHHHHHHHH--------------------------------HHHHhccccCCChHHHH----
Q psy14428 388 GLYGERVGTFSVLTPTSDETERIMSQL--------------------------------KILIRGFYSNPPIHGAR---- 431 (583)
Q Consensus 388 ~l~GlRiG~lv~~~p~~~~~~~li~~l--------------------------------~~~~~~~~~~~s~~~q~---- 431 (583)
|+||||+||+++ ++++.++++++.| +++..+...+.|.+.|.
T Consensus 313 g~~G~RlG~i~~--~~~~v~d~li~~lp~~~~~~l~~ry~~~~~~p~~~~fidr~vadsr~v~~~~~~g~s~p~Q~q~al 390 (521)
T TIGR03801 313 GATGWRLGTIAL--HKDNIFDKLIAELPEEKKKELDKRYSSLTTEPRKLKFIDRLVADSRQVALNHTAGLSTPQQVQMAL 390 (521)
T ss_pred cCchhhhhhhhc--CchHHHHHHHHhccHHHHHHHhhhhccccCChhhhhhHHHHHHHHHHHHHhccCCCCcHHHHHHHH
Confidence 999999999999 7543333344322 44566667888898887
Q ss_pred -HHHHHhCChhhhhhhhhHHHHHHHHHHHH-hh-ccC---CCccchhhHHHHhcCChh--HHHHHHHHHHHHHHHHHHHH
Q psy14428 432 -IVTEILSDPKLKAQCDETERIMSQLKILI-RG-FYS---NPPIHGARIVTEILSDPK--LKAQWFEECKGMSNRISSIR 503 (583)
Q Consensus 432 -~~~~~l~~~~~~~~~~~~~~~~~~l~~~~-r~-~~~---~~p~~g~~i~~~~l~~~~--~~~~~~~~l~~~~~~~~~~r 503 (583)
++..+++.+ +...+..++.+.++++.+ +. .+. .+|.+|.|+|..+..-.. ....+.+.+. +.+ ...
T Consensus 391 ~a~~all~~~--~~y~~~~~~~~~~R~~~l~~~Lg~~~~~~~~~g~~Y~~~di~~~~~~~~~~~f~~~l~---~~~-~~~ 464 (521)
T TIGR03801 391 FSLFALMDKE--NAYKAETKDICRRREKLLFRGLGLPLQEDPNDVAYYTLIDLEEWAEKNYGEEFSSYLK---KNY-SPV 464 (521)
T ss_pred HHHHHHhccc--hhHHHHHHHHHHHHHHHHHHhcCCCCcCCCCCeEEEEEeehHHHHHHhcchHHHHHHh---ccC-CHH
Confidence 344555532 223344444455454443 22 122 457778888887653100 0011111111 111 234
Q ss_pred HHHHHHHHhc---CCCCC-cccccccccceeecCCChhhhhhhhhhhhHHHH
Q psy14428 504 EELKSKILDK---GSKKN-WDHITNQKGMFCYTGLSASQGMSNRISSIREEL 551 (583)
Q Consensus 504 ~~l~~~L~~~---~~pg~-~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~ 551 (583)
+++.+.+++. ..||. |. ......+++++.++++++++.. .++++-+
T Consensus 465 ~~~~~L~~e~gV~v~PG~~Fg-~~~~~vRisla~l~~~~~~~~~-~rl~~~~ 514 (521)
T TIGR03801 465 DVLFRLAEETGIVLLPGGGFG-GPEWSVRVSLANLNEYDYAEIG-RAIRKIL 514 (521)
T ss_pred HHHHHHHHhCCEEEeCchhcC-CCCCeEEEEecCCCHHHHHHHH-HHHHHHH
Confidence 4555555552 36876 43 2344688999988888776633 4444444
|
This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1). |
| >PRK03317 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-37 Score=321.48 Aligned_cols=245 Identities=14% Similarity=0.100 Sum_probs=202.6
Q ss_pred CccccCCccccCCCCCCCCChHHHHHHHHHhcc--CCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCch
Q psy14428 164 KKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEK--NLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGS 241 (583)
Q Consensus 164 ~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~--~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~ 241 (583)
..++|+.++++.. +++.+.+++.+.+.. .....|+ ..|.++||++||+|+.+.+|+.+++++|++ |+|++
T Consensus 27 ~~i~l~~~~~~~~-----~~~~~~~al~~~l~~~~~~~~~Y~-~~g~~~lr~aia~~~~~~~~~~~~~~~I~i--t~G~~ 98 (368)
T PRK03317 27 VPVRLNTNENPYP-----PSPALVADIAEAVAEAAAGLNRYP-DRDAVALRADLAAYLTAQTGVGLTVENVWA--ANGSN 98 (368)
T ss_pred ceeEecCCCCCCC-----CCHHHHHHHHHHHhhhhhhhccCC-CCchHHHHHHHHHHhhhhccCCCChhhEEE--CCCHH
Confidence 4588999987532 567888888776543 1245675 468999999999999999899999999999 99999
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCC
Q psy14428 242 GSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHN 321 (583)
Q Consensus 242 ~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~N 321 (583)
+++.++ +..++++||.|++++|+|+.|...++..|.+++.++. + +++++|++.+++++.+ .++++++++||||
T Consensus 99 ~~l~~~---~~~~~~~gd~v~v~~P~y~~~~~~~~~~g~~~~~~~~-~-~~~~~d~~~l~~~~~~--~~~~~i~l~~p~N 171 (368)
T PRK03317 99 EILQQL---LQAFGGPGRTALGFVPSYSMHPIIARGTHTEWVEGPR-A-ADFTLDVDAAVAAIAE--HRPDVVFLTSPNN 171 (368)
T ss_pred HHHHHH---HHHhcCCCCEEEEeCCChHHHHHHHHhcCCeeEEccc-C-CCCCCCHHHHHHHHhc--cCCCEEEEeCCCC
Confidence 999985 5566778999999999999999999999999999887 3 3479999999988852 3567888899999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEc
Q psy14428 322 PTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLT 401 (583)
Q Consensus 322 PTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~ 401 (583)
|||.+++.+++++|+++| +++||+||+|.+|.+++ .. +...+.+..+++|+++||||.||+||+|+||+++
T Consensus 172 PtG~~~~~~~l~~l~~~~---~~~lI~DE~y~~~~~~~---~~-~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~~~-- 242 (368)
T PRK03317 172 PTGTALPLDDVEAILDAA---PGIVVVDEAYAEFRRSG---TP-SALTLLPEYPRLVVSRTMSKAFAFAGGRLGYLAA-- 242 (368)
T ss_pred CCCCCCCHHHHHHHHHHC---CceEEEeCCchhhcccC---Cc-CHHHHHHhCCCEEEEEechhhhccchhhhhhhhC--
Confidence 999999999999998887 68999999999998764 12 2223334456899999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCC
Q psy14428 402 PTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSD 439 (583)
Q Consensus 402 p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~ 439 (583)
+ +++++.+.+.. ...++|.++|.++..++++
T Consensus 243 ~-----~~~~~~l~~~~--~~~~~s~~~~~a~~~~l~~ 273 (368)
T PRK03317 243 A-----PAVVDALRLVR--LPYHLSAVTQAAARAALRH 273 (368)
T ss_pred C-----HHHHHHHHhcC--CCCCCCHHHHHHHHHHhhC
Confidence 7 58899888654 3457889999998888865
|
|
| >PRK14809 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=319.45 Aligned_cols=277 Identities=19% Similarity=0.174 Sum_probs=211.1
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
...+.++|+.|+++.. +++.+.+++.+.... ...|+ ..|.++||++||+++. +++++|++ |+|+
T Consensus 28 ~~~~~i~l~~~~~~~~-----~~~~~~~~~~~~~~~--~~~Y~-~~~~~~lr~~ia~~~~------~~~~~I~i--t~G~ 91 (357)
T PRK14809 28 DPDDLVKLSSNENPHG-----PSPAAVEAIREAAER--VHSYP-KASHADLTAALADRWD------VSPEQVWL--ANGG 91 (357)
T ss_pred CccceeEecCCCCCCC-----CCHHHHHHHHHHHhh--hhcCC-CCCHHHHHHHHHHHhC------CCcceEEE--CCCH
Confidence 3457899999988532 446677777665543 45685 4789999999999983 68999999 9999
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCC
Q psy14428 241 SGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSH 320 (583)
Q Consensus 241 ~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~ 320 (583)
++++.++ +..++++||.|++++|+|..|...++..|++++.+++..++++.++.+.+.+.. +++++++++|||
T Consensus 92 ~~al~~~---~~~~~~~gd~V~v~~P~y~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~----~~~k~i~l~~p~ 164 (357)
T PRK14809 92 DGALDYL---ARAMLDPGDTVLVPDPGFAYYGMSARYHHGEVREYPVSKADDFEQTADTVLDAY----DGERIVYLTSPH 164 (357)
T ss_pred HHHHHHH---HHHhcCCCCEEEEeCCChHHHHHHHHHcCCeEEEEecccCcCCCcCHHHHHHhh----cCCcEEEEeCCC
Confidence 9999985 455677899999999999999999999999999999832233555666555433 356788889999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEE
Q psy14428 321 NPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVL 400 (583)
Q Consensus 321 NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~ 400 (583)
||||.+++.+++++|+++|++ +++||+||+|.+|.+++ . .+.. .+..++||+++||||+||+||+|+||+++
T Consensus 165 NPTG~~~s~~~~~~l~~~~~~-~~~iI~De~y~~~~~~~---~--~~~~-~~~~~~vi~~~SfSK~~~~~GlRiG~~~~- 236 (357)
T PRK14809 165 NPTGSEIPLDEVEALAERTDE-ETLVVVDEAYGEFAERP---S--AVAL-VEERDDVAVLRTFSKAYGLAGLRLGYAVV- 236 (357)
T ss_pred CCCCcCCCHHHHHHHHHhCcc-CcEEEEechhhhccCCc---h--hHHH-HhhCCCEEEEecchhHhcCcchhheeeec-
Confidence 999999999999999999875 78999999999998643 1 2222 34467999999999999999999999999
Q ss_pred cCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhcc--CCCccchhhHHHHh
Q psy14428 401 TPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFY--SNPPIHGARIVTEI 478 (583)
Q Consensus 401 ~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~--~~~p~~g~~i~~~~ 478 (583)
| +++++++.+.. ...+++.++|.++..++.+.. ++++.++.+..+++.+...+ ...|.+|+|+|+++
T Consensus 237 -~-----~~~~~~~~~~~--~~~~~~~~~~~~a~~~l~~~~---~~~~~~~~~~~~r~~l~~~L~~~~~~~~g~f~~~~~ 305 (357)
T PRK14809 237 -P-----EEWADAYARVN--TPFAASELACRAGLAALDDDE---HVERTVETARWAREYIREELDAPTWESAGNFVLAEV 305 (357)
T ss_pred -C-----HHHHHHHHHhC--CCCCCCHHHHHHHHHHhCCHH---HHHHHHHHHHHHHHHHHHHhcCccCCCCCCEEEEEC
Confidence 7 57899888764 346789999999999987633 33333333333333332222 13467899999876
Q ss_pred c
Q psy14428 479 L 479 (583)
Q Consensus 479 l 479 (583)
.
T Consensus 306 ~ 306 (357)
T PRK14809 306 G 306 (357)
T ss_pred C
Confidence 3
|
|
| >PRK05166 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-36 Score=316.01 Aligned_cols=285 Identities=19% Similarity=0.182 Sum_probs=221.8
Q ss_pred CCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCch
Q psy14428 162 HPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGS 241 (583)
Q Consensus 162 ~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~ 241 (583)
.++.++|+.|.+. .+ +++.+.+++.+.... ..+|++..| .+||+++|++++ +++++|++ |+|++
T Consensus 35 ~~~~i~l~~~~~~--~~---~~~~~~~al~~~~~~--~~~Y~~~~g-~~lr~~ia~~~~------~~~~~i~~--t~G~~ 98 (371)
T PRK05166 35 VPRIAKLGSNENP--LG---PSPAVRRAFADIAEL--LRLYPDPQG-RALREAIAARTG------VPADRIIL--GNGSE 98 (371)
T ss_pred CcceEEcCCCCCC--CC---CCHHHHHHHHHHHHH--hhcCCCCcH-HHHHHHHHHHhC------cCHHHEEE--cCCHH
Confidence 4578999999874 22 457788887765432 567999999 499999999873 56899999 99999
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCC
Q psy14428 242 GSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHN 321 (583)
Q Consensus 242 ~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~N 321 (583)
+++.++ +..++.+||.|++++|+|+.+...++..|++++.+++ ++ ++++|++.+++.+ .+++++++++||||
T Consensus 99 ~~l~~~---~~~~~~~gd~vli~~P~y~~~~~~~~~~g~~~~~v~~-~~-~~~~~~~~l~~~~---~~~~~~v~l~~p~N 170 (371)
T PRK05166 99 DLIAVI---CRAVLRPGDRVVTLYPSFPLHEDYPTMMGARVERVTV-TP-DLGFDLDALCAAV---ARAPRMLMFSNPSN 170 (371)
T ss_pred HHHHHH---HHHhcCCCCEEEEcCCChHHHHHHHHHcCCeEEEeec-CC-CCCCCHHHHHHhh---hcCCCEEEEeCCCC
Confidence 999985 4445677999999999999999999999999999998 54 3789999998877 34567888999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEc
Q psy14428 322 PTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLT 401 (583)
Q Consensus 322 PTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~ 401 (583)
|||.+++.+++++|+++|++ +++||+||+|.+|.+++. .+..+..+.+..++||+++||||.||+||+|+||+++
T Consensus 171 PtG~~~~~~~~~~l~~~~~~-~~~ii~De~y~~~~~~~~--~~~~~~~~~~~~~~vi~i~SfSK~~~l~GlRiG~~i~-- 245 (371)
T PRK05166 171 PVGSWLTADQLARVLDATPP-ETLIVVDEAYAEYAAGDD--YPSALTLLKARGLPWIVLRTFSKAYGLAGLRVGYGLV-- 245 (371)
T ss_pred CCCCCCCHHHHHHHHHhCCC-CcEEEEECcHHHhcCCcC--cccHHHHHhhcCCCEEEEeechHhhhcchhheeeeec--
Confidence 99999999999999999875 889999999999996541 1222333323456899999999999999999999887
Q ss_pred CCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHhcCC
Q psy14428 402 PTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEILSD 481 (583)
Q Consensus 402 p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~l~~ 481 (583)
++ +++++.+.+... ..+++.++|.++...+.+..
T Consensus 246 ~~----~~l~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~---------------------------------------- 279 (371)
T PRK05166 246 SD----PELVGLLDRVRT--PFNVNGAAQAAALAALDDEE---------------------------------------- 279 (371)
T ss_pred CC----HHHHHHHHHhcc--CCCCCHHHHHHHHHHhcCHH----------------------------------------
Confidence 54 478888876542 45688999988877776521
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCC
Q psy14428 482 PKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLS 535 (583)
Q Consensus 482 ~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~ 535 (583)
| +++.++.+.++|+.+.+.|++.+ +.. .+.+|+|.|..++
T Consensus 280 ------~---~~~~~~~~~~~r~~l~~~L~~~g----~~~-~p~~g~fl~~~~~ 319 (371)
T PRK05166 280 ------H---LAKGVALALAERERLKKELAEMG----YRI-APSRANFLFFDAR 319 (371)
T ss_pred ------H---HHHHHHHHHHHHHHHHHHHHHCc----Cee-CCCcCCEEEEeCC
Confidence 1 23334455677777888887753 332 4567888898764
|
|
| >PRK07392 threonine-phosphate decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-36 Score=312.89 Aligned_cols=277 Identities=16% Similarity=0.078 Sum_probs=204.5
Q ss_pred CCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCch
Q psy14428 162 HPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGS 241 (583)
Q Consensus 162 ~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~ 241 (583)
..+.++|+.+++. .+ +++.+.+++.+.... ...|+++ +.++||++||+|+ .+++++|++ |+|++
T Consensus 21 ~~~~i~l~~~~n~--~~---~~~~~~~a~~~~~~~--~~~Y~~~-~~~~Lr~aia~~~------~v~~~~I~i--t~G~~ 84 (360)
T PRK07392 21 PDAILDFSASINP--LG---PPESVIAAIQSALSA--LRHYPDP-DYRELRLALAQHH------QLPPEWILP--GNGAA 84 (360)
T ss_pred cccEEEeCCcCCC--CC---CCHHHHHHHHHHHHH--hhcCCCc-CHHHHHHHHHHHh------CcChhhEEE--CCCHH
Confidence 3467999988764 22 457777777765543 5678765 4689999999998 378899999 99999
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCC-C---CCChhhHHHHHHcCCCCcEEEEeC
Q psy14428 242 GSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKT-N---GLDFAGMMEDIKAMPERSILFLQT 317 (583)
Q Consensus 242 ~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~-~---g~d~~~l~~~l~~~~~~~~~i~i~ 317 (583)
+++.++ +..+.+ ||.|++++|+|..|...++..|++++.+|+ +.++ + ..+++.+++. .++++++++|
T Consensus 85 ~~i~~~---~~~l~~-g~~vlv~~P~y~~~~~~~~~~g~~~~~v~~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~ 155 (360)
T PRK07392 85 ELLTWA---GRELAQ-LRAVYLITPAFGDYRRALRAFGATVKELPL-PLDQPSPGLTLRLQTLPPQ----LTPNDGLLLN 155 (360)
T ss_pred HHHHHH---HHHhCC-CCeEEEECCCcHHHHHHHHHcCCeEEEEec-ccccCCcccccCHHHHHHh----ccCCCEEEEe
Confidence 999985 444554 889999999999999999999999999999 4432 1 1234444332 3567899999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEE
Q psy14428 318 SSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTF 397 (583)
Q Consensus 318 ~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~l 397 (583)
|||||||.+++++++.+ +++++++ +|+||+|.+|.+++ ...++....+..+++|+++||||+||+||+|+||+
T Consensus 156 nP~NPTG~~~~~~~l~~---l~~~~~~-~IiDE~y~~~~~~~---~~~s~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~~ 228 (360)
T PRK07392 156 NPHNPTGKLWSREAILP---LLEQFAL-VVVDEAFMDFLPPD---AEQSLIPCLAEYPNLIILRSLTKFYSLPGLRLGYA 228 (360)
T ss_pred CCCCCCCCCcCHHHHHH---HHHHCCE-EEEECchhhhccCc---cccchHHHhhcCCCEEEEEechhhhcCCchheeee
Confidence 99999999999776655 4567776 56699999998865 22233333455679999999999999999999999
Q ss_pred EEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhh-HHHHHHHHHHHHhh--ccCCCccchhhH
Q psy14428 398 SVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDE-TERIMSQLKILIRG--FYSNPPIHGARI 474 (583)
Q Consensus 398 v~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~-~~~~~~~l~~~~r~--~~~~~p~~g~~i 474 (583)
++ | +++++++.+.. ...++|.++|.++..+++++.+.++..+ .+..++.+...++. .+...|++|+|+
T Consensus 229 v~--~-----~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~fl 299 (360)
T PRK07392 229 IA--H-----PDRLQRWQQWR--DPWPVNGLAAAAAIAALADRDFQQQTWAWLPPAREALFQGLASLPGLTPLPSAANFL 299 (360)
T ss_pred eC--C-----HHHHHHHHhhC--CCCCCCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCCcEECCCCCCEE
Confidence 99 7 57888887654 3467899999999999998766654332 22222222222332 344567889999
Q ss_pred HHHhc
Q psy14428 475 VTEIL 479 (583)
Q Consensus 475 ~~~~l 479 (583)
|+++.
T Consensus 300 ~~~~~ 304 (360)
T PRK07392 300 LVQSQ 304 (360)
T ss_pred EEEcC
Confidence 87654
|
|
| >KOG0634|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-36 Score=298.15 Aligned_cols=277 Identities=17% Similarity=0.211 Sum_probs=234.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHh-CCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhh
Q psy14428 199 DHEYANIGGDAKFCKLAAQLAY-GEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTD 277 (583)
Q Consensus 199 ~~~Y~~~~G~~~Lr~aia~~~~-~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~ 277 (583)
.++|++..|.++|+..|.++.. ..+.......+|++ |+|.+.+++. +++.++++||.|+++.++|+......+.
T Consensus 93 alQYg~s~G~peLl~fik~h~~~~ih~p~~~~wdiii--t~G~t~~l~~---~l~~~~N~gd~vlie~~ty~~AL~s~~a 167 (472)
T KOG0634|consen 93 ALQYGQSSGIPELLLFIKDHNRPTIHAPPYKNWDIII--TNGNTDGLFK---VLRTLINRGDHVLIEEYTYPSALQSMEA 167 (472)
T ss_pred hhccccccCcHHHHHHHHHhccccccCCCCCCceEEE--ecCCchHHHH---HHHHhhcCCCceEEecccchHHHHhccc
Confidence 6799999999999999999776 34445556669999 9999999998 5777888899999999999999999999
Q ss_pred cCCeEEEEecccCCCCCCChhhHHHHHHcCC-------CCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEec
Q psy14428 278 SRLNVGAYRYFDNKTNGLDFAGMMEDIKAMP-------ERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDM 350 (583)
Q Consensus 278 ~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~-------~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De 350 (583)
.|+++++|++ |. .|++++.+++.+..+. .+..+|.||+.|||||..+|.+++++|+++|+|||++|||||
T Consensus 168 ~gv~~ipv~m-d~--~Gi~pE~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tls~errk~iy~LArKyDfLIVeDd 244 (472)
T KOG0634|consen 168 LGVKIIPVKM-DQ--DGIDPESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTLSLERRKKIYQLARKYDFLIVEDD 244 (472)
T ss_pred cCceEEeccc-cC--CCCCHHHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCCccCHHHHHHHHHHHHHcCEEEEecC
Confidence 9999999998 54 6999999999998762 256789999999999999999999999999999999999999
Q ss_pred cCCCCCCCCC------CCchHHHHHH----------HHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHH
Q psy14428 351 AYLGLTSGDF------DKDAFSLRYF----------AKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQL 414 (583)
Q Consensus 351 ~Y~~l~~~~~------~~~~~~~~~~----------~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l 414 (583)
+|.-+.++.. +.+..+...+ .|..+|||.+.||||.++ ||+|+||+.+ + ..+++++
T Consensus 245 pYy~Lq~~~y~~~~~~~~p~~s~~~f~k~l~~sflslDtdGrVIr~dSFSKiia-PGlRlG~it~--~-----~~~l~ri 316 (472)
T KOG0634|consen 245 PYYFLQMNTYNPSLELESPAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFSKIIA-PGLRLGWITG--N-----SLFLKRI 316 (472)
T ss_pred ccceeeccccCCCccccCccccHHHHHHhhcCCcccccccccEEeccchhhhhc-CcceeEEeec--C-----HHHHHHH
Confidence 9999988731 1112221122 245689999999999998 9999999999 6 4789999
Q ss_pred HHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHhcCChhHHHHHHHHHHH
Q psy14428 415 KILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKG 494 (583)
Q Consensus 415 ~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~l~~~~~~~~~~~~l~~ 494 (583)
.+.......++|.++|.++.++++... .+-|.+.+.+
T Consensus 317 l~~ae~~t~~pSg~sq~iv~a~l~~wg-------------------------------------------qeG~~~wi~~ 353 (472)
T KOG0634|consen 317 LDLAEVATSGPSGFSQGIVYAMLKRWG-------------------------------------------QEGFLRWIQH 353 (472)
T ss_pred hhhcceeecCcccccHHHHHHHHHHHH-------------------------------------------HHHHHHHHHH
Confidence 999999999999999999998886421 0235556888
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCC-cccccccccceeecCCC
Q psy14428 495 MSNRISSIREELKSKILDKGSKKN-WDHITNQKGMFCYTGLS 535 (583)
Q Consensus 495 ~~~~~~~~r~~l~~~L~~~~~pg~-~~~~~~~~g~f~~~~l~ 535 (583)
++..|..+|+.+..+|.+.. |.. ..+..|.+|||.|+.++
T Consensus 354 l~~~Yt~Rrn~~l~Al~kyl-p~~~~~~~~P~aGmFiwv~i~ 394 (472)
T KOG0634|consen 354 LRSSYTERRNALLSALDKYL-PKSVCEYHPPKAGMFIWVEIP 394 (472)
T ss_pred HHHHHHHHHHHHHHHHHHhC-CCCeeEEecCCcceEEEEEec
Confidence 89999999999999999865 555 66788999999998876
|
|
| >PRK08153 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=312.49 Aligned_cols=239 Identities=15% Similarity=0.137 Sum_probs=195.1
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
+.+..++|+.|++.. + +++.+.+++.+.... ..+|+++ +.++||++||+++. +++++|++ |+|+
T Consensus 30 g~~~~~~l~~~~~~~--~---~~~~~~~a~~~~~~~--~~~Y~~~-~~~~Lr~~ia~~~~------~~~~~I~i--t~G~ 93 (369)
T PRK08153 30 GRPFRARIGANESGF--G---PSPSVIAAMREAAAE--IWKYGDP-ENHDLRHALAAHHG------VAPENIMV--GEGI 93 (369)
T ss_pred CCcceeEecCCCCCC--C---CCHHHHHHHHHHHHH--hhcCCCC-ccHHHHHHHHHHhC------CCHHHEEE--cCCH
Confidence 344557999998752 2 456777777665432 4568776 58999999999983 67899999 9999
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCC
Q psy14428 241 SGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSH 320 (583)
Q Consensus 241 ~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~ 320 (583)
++++.++ +..++.+||.|++++|+|+.+...++..|++++.+|+ +. .++|++.+++.+. ..+++++++||||
T Consensus 94 ~~~l~~~---~~~~~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~vp~-~~--~~~~~~~l~~~~~--~~~~~~i~l~~P~ 165 (369)
T PRK08153 94 DGLLGLI---VRLYVEPGDPVVTSLGAYPTFNYHVAGFGGRLVTVPY-RD--DREDLDALLDAAR--RENAPLVYLANPD 165 (369)
T ss_pred HHHHHHH---HHHhcCCCCEEEECCCcchHHHHHHHHcCCeEEEeeC-CC--CCCCHHHHHHHhc--ccCCcEEEEeCCC
Confidence 9999985 4456677999999999999999999999999999998 44 3678888776553 3567888899999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEE
Q psy14428 321 NPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVL 400 (583)
Q Consensus 321 NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~ 400 (583)
||||.+++.+++++|+++|++ +++||+||+|.+|.+++ ...++. ...+++|+++||||+||+||+|+||+++
T Consensus 166 NPtG~~~~~~~l~~l~~~~~~-~~~lI~DE~y~~~~~~~---~~~~~~---~~~~~~i~~~SfSK~~g~~GlRiG~~v~- 237 (369)
T PRK08153 166 NPMGSWHPAADIVAFIEALPE-TTLLVLDEAYCETAPAG---AAPPID---TDDPNVIRMRTFSKAYGLAGARVGYAIG- 237 (369)
T ss_pred CCCCCCCCHHHHHHHHHhCCC-CcEEEEeCchhhhcCcc---cchhhh---hcCCCEEEEecchHhccCcchheeeeec-
Confidence 999999999999999998874 89999999999998764 222332 2356899999999999999999999999
Q ss_pred cCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCC
Q psy14428 401 TPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSD 439 (583)
Q Consensus 401 ~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~ 439 (583)
| +++++.+.+.+.. .++|.+.|.++..++++
T Consensus 238 -~-----~~~~~~l~~~~~~--~~~s~~~q~~~~~~l~~ 268 (369)
T PRK08153 238 -A-----PGTIKAFDKVRNH--FGMNRIAQAAALAALKD 268 (369)
T ss_pred -C-----HHHHHHHHHhhcC--CCCCHHHHHHHHHHhcC
Confidence 7 5899998876643 57899999999999875
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=334.84 Aligned_cols=304 Identities=13% Similarity=0.094 Sum_probs=231.9
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCC-CCeEEEecCC
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKD-NRLAIVQGIS 239 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~-~~I~i~~t~G 239 (583)
.+++.|+|+.|+++.. +++.+++++.+..... .+ ..|.+++|+++++++.+++|+++++ ++|++ |+|
T Consensus 695 ~g~~vI~LsinE~d~p-----pPp~V~eAi~eal~~~---~~--s~g~pdlr~aLa~~la~~~Gv~~d~~e~IIv--t~G 762 (1082)
T PLN02672 695 QESSLIHMDVDESFLP-----VPSAVKASIFESFVRQ---NI--SESETDPRPSILQFIKSNYGFPTDSCTEFVY--GDT 762 (1082)
T ss_pred CCCCEEEEeCCCCCCC-----CCHHHHHHHHHHHhhc---CC--CCCChHHHHHHHHHHHHHhCcCCCCCCEEEE--eCC
Confidence 4568899999998632 5678888887765331 22 4578899999999999999998875 58999 999
Q ss_pred chhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCC
Q psy14428 240 GSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSS 319 (583)
Q Consensus 240 ~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p 319 (583)
+++++.++ +..++++||.|++++|+|+.|...++..|++++.+|+.+++++.+|++.+++.+.. .++++++++||
T Consensus 763 s~elL~ll---l~aLl~pGD~VLVp~PtY~~Y~~~a~~~Ga~vv~Vpl~~e~gf~lD~d~Le~al~~--~~~~~I~L~nP 837 (1082)
T PLN02672 763 SLALFNKL---VLCCVQEGGTLCFPAGSNGTYVSAAKFLKANFRRIPTKSSDGFKLTAKTLASTLET--VKKPWVYISGP 837 (1082)
T ss_pred HHHHHHHH---HHHHcCCCCEEEEeCCChHHHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHhcc--CCCCEEEEECc
Confidence 99999874 45567789999999999999999999999999999993234577888899888732 13457888999
Q ss_pred C-CCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHH---HHh---cCcEEEEecCcccccccCc
Q psy14428 320 H-NPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYF---AKE---VGQLCLAQSFSKNMGLYGE 392 (583)
Q Consensus 320 ~-NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~---~~~---~~~vi~i~S~SK~~~l~Gl 392 (583)
| ||||.+++.+++++|+++|++|+++||+||+|.++.|++......++.+. .+. ..+||+++||||.|++||+
T Consensus 838 nhNPTG~v~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVIvL~SfSKkf~lpGL 917 (1082)
T PLN02672 838 TINPTGLLYSNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILSRLKSSNPSFAVALLGGLSTELLSGGH 917 (1082)
T ss_pred CCCCcCccCCHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhHHHHhccccCCceEEEEeCcHHhhccHHH
Confidence 6 99999999999999999999999999999999999997521111112211 111 2479999999999999999
Q ss_pred cceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchh
Q psy14428 393 RVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGA 472 (583)
Q Consensus 393 RiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~ 472 (583)
|+||+++ |+ +.+++++.+.... .++....|.++..++.-
T Consensus 918 RIGylIa--p~----~eLi~~l~~~~~~--s~~~~~~q~Aaaaalal--------------------------------- 956 (1082)
T PLN02672 918 EFGFLAL--ND----SVLIDAFHSAPGL--SRPHSTLKYTIKKLLGL--------------------------------- 956 (1082)
T ss_pred HheeEEe--CC----HHHHHHHHHhhhh--cCCCcHHHHHHHHHHHH---------------------------------
Confidence 9999999 75 3588888775432 22333445444433310
Q ss_pred hHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCC
Q psy14428 473 RIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGL 534 (583)
Q Consensus 473 ~i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l 534 (583)
+.+ ....|.++++++++.+.++|+.+.+.|++.+ +.+..|++|+|.|..+
T Consensus 957 ------l~~--~~~~~~~~l~e~r~~Lk~rRd~L~e~L~~~G----i~v~~PeGGFfLwl~l 1006 (1082)
T PLN02672 957 ------KNQ--KSSDLLDGVAEQKKILKSRAERLKETLEACG----WDVLEPQGGISMVAKP 1006 (1082)
T ss_pred ------Hhc--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CeEecCCcEEEEEEEc
Confidence 000 0124667788889999999999999999864 5677899999999865
|
|
| >PRK03158 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=311.37 Aligned_cols=239 Identities=19% Similarity=0.195 Sum_probs=198.3
Q ss_pred CccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhH
Q psy14428 164 KKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGS 243 (583)
Q Consensus 164 ~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~a 243 (583)
+.++|+.+++. .+ +++.+.+++.+.... ..|.|..|.++||+++|+++. +++++|++ |+|++++
T Consensus 30 ~~i~l~~n~~~--~~---~~~~v~~a~~~~~~~---~~~~p~~g~~~lr~~ia~~~~------~~~~~i~~--t~G~~~~ 93 (359)
T PRK03158 30 KIVKLASNENP--YG---PSPKVKEAIAAHLDE---LALYPDGYAPELRTKVAKHLG------VDEEQLLF--GAGLDEV 93 (359)
T ss_pred ceEEecCCCCC--CC---CCHHHHHHHHHHHHH---hhcCCCCcHHHHHHHHHHHhC------CCHHHEEE--CCCHHHH
Confidence 67899998875 23 456788887766542 457788899999999999983 56899999 9999999
Q ss_pred HHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCC
Q psy14428 244 LRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPT 323 (583)
Q Consensus 244 l~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPT 323 (583)
+.++ +..++.+||.|++++|+|+.+...+...|++++.+|+ + ++++|++.+++.+ .+++++++++||||||
T Consensus 94 l~~~---~~~~~~~gd~v~~~~p~y~~~~~~~~~~g~~~~~~~~-~--~~~~d~~~l~~~~---~~~~~~v~i~~p~NPt 164 (359)
T PRK03158 94 IQMI---SRALLNPGTNTVMAEPTFSQYRHNAIIEGAEVREVPL-K--DGGHDLEAMLKAI---DEQTKIVWICNPNNPT 164 (359)
T ss_pred HHHH---HHHHhCCCCEEEEcCCCHHHHHHHHHHcCCeEEEEec-C--CCCcCHHHHHHhc---CCCCCEEEEeCCCCCC
Confidence 9885 4445667999999999999999999999999999999 4 3688999988776 4577888899999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCC
Q psy14428 324 GVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPT 403 (583)
Q Consensus 324 G~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~ 403 (583)
|.+++.+++.++++.|+ ++++||+||+|.+|.+++. ...++.. .+..+++|+++||||+||+||+|+||+++ +
T Consensus 165 G~~~~~~~l~~~~~~~~-~~~~ii~De~y~~~~~~~~--~~~~~~~-~~~~~~vi~~~S~SK~~g~~GlRiG~~v~--~- 237 (359)
T PRK03158 165 GTYVNHEELLSFLESVP-SHVLVVLDEAYYEYVTAED--YPDTLPL-LEKYENLIVLRTFSKAYGLAALRVGYGIA--S- 237 (359)
T ss_pred CCCCCHHHHHHHHHhCC-CCcEEEEECchHhhcCCcc--cccHHHH-HHhcCCEEEEEechHhhcCcchhhehhcC--C-
Confidence 99999999999998874 6999999999999988642 1222333 35567999999999999999999999999 7
Q ss_pred chhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCCh
Q psy14428 404 SDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDP 440 (583)
Q Consensus 404 ~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~ 440 (583)
+++++++.+... ..++|.++|.++..+++++
T Consensus 238 ----~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~ 268 (359)
T PRK03158 238 ----EELIEKLNIARP--PFNTTRIAQYAAIAALEDQ 268 (359)
T ss_pred ----HHHHHHHHHhcC--CCCCCHHHHHHHHHHhcCH
Confidence 588999887654 3578999999999999763
|
|
| >PLN03026 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=310.06 Aligned_cols=279 Identities=18% Similarity=0.216 Sum_probs=220.0
Q ss_pred CCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCch
Q psy14428 162 HPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGS 241 (583)
Q Consensus 162 ~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~ 241 (583)
..+.|+|+.|++.. + +++.+.+++.+.. ....|++ .+.++||++||++++ +++++|++ |+|++
T Consensus 51 ~~~~i~l~~n~~p~--~---~~~~v~~a~~~~~---~~~~Yp~-~~~~~lr~~ia~~~~------~~~~~I~~--t~Ga~ 113 (380)
T PLN03026 51 PEDIVKLDANENPY--G---PPPEVLEALGNMK---FPYVYPD-PESRRLRAALAEDSG------LESENILV--GCGAD 113 (380)
T ss_pred ccceEEccCCCCCC--C---CCHHHHHHHHhhH---hhccCCC-CCHHHHHHHHHHHhC------cChhhEEE--cCCHH
Confidence 45789999998742 2 4466777765421 1234654 578999999999985 67899999 99999
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCC
Q psy14428 242 GSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHN 321 (583)
Q Consensus 242 ~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~N 321 (583)
+++.++ +..++.+||+|++++|+|+.|...++..|++++.+++ ++ ++++|++.+++.+. .+++++++++||||
T Consensus 114 ~~i~~~---~~~~~~~gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~-~~-~~~~d~~~l~~~~~--~~~~~~v~l~~P~N 186 (380)
T PLN03026 114 ELIDLL---MRCVLDPGDKIIDCPPTFGMYVFDAAVNGAEVIKVPR-TP-DFSLDVPRIVEAVE--THKPKLLFLTSPNN 186 (380)
T ss_pred HHHHHH---HHHhcCCCCEEEEcCCChHHHHHHHHHcCCEEEEeec-CC-CCCcCHHHHHHHHh--ccCCcEEEEeCCCC
Confidence 999985 4455677999999999999999999999999999998 43 47899999988773 35678999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEc
Q psy14428 322 PTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLT 401 (583)
Q Consensus 322 PTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~ 401 (583)
|||.+++.+++++|++.+ ++||+||+|.+|.+++ .. . ...+..+++|+++||||.||++|+|+||+++
T Consensus 187 PTG~~~~~~~l~~l~~~~----~~vi~DeaY~~~~~~~---~~--~-~~~~~~~~viv~~SfSK~~glaGlRiGy~~~-- 254 (380)
T PLN03026 187 PDGSIISDDDLLKILELP----ILVVLDEAYIEFSTQE---SR--M-KWVKKYDNLIVLRTFSKRAGLAGLRVGYGAF-- 254 (380)
T ss_pred CCCCCCCHHHHHHHHhcC----CEEEEECcchhhcCCc---ch--H-HHHHhCCCEEEEecchHhhcCccccceeeec--
Confidence 999999999999998753 8999999999998753 11 2 2234568999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHhcCC
Q psy14428 402 PTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEILSD 481 (583)
Q Consensus 402 p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~l~~ 481 (583)
+ +++++++.+.+. ..+++.++|.++..++++..
T Consensus 255 ~-----~~~i~~l~~~~~--~~~~~~~~q~aa~~aL~~~~---------------------------------------- 287 (380)
T PLN03026 255 P-----LSIIEYLWRAKQ--PYNVSVAAEVAACAALSNPK---------------------------------------- 287 (380)
T ss_pred C-----HHHHHHHHHhcC--CCCCCHHHHHHHHHHhhCHH----------------------------------------
Confidence 7 589999887664 35688999999888886521
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCCh
Q psy14428 482 PKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSA 536 (583)
Q Consensus 482 ~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~ 536 (583)
| ++++++.+.++|+.+.+.|++++ .. ...+++|+|.|..++.
T Consensus 288 ------~---~~~~~~~~~~~r~~l~~~L~~~~---~~-~~~p~~~~f~~~~~~~ 329 (380)
T PLN03026 288 ------Y---LEDVKNALVEERERLFGLLKEVP---FL-EPYPSDANFILCRVTS 329 (380)
T ss_pred ------H---HHHHHHHHHHHHHHHHHHHHHCC---CC-eECCCCCeEEEEECCC
Confidence 1 33445566788888989988753 12 2357889999987763
|
|
| >PRK09105 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=309.25 Aligned_cols=276 Identities=17% Similarity=0.186 Sum_probs=214.9
Q ss_pred CCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchh
Q psy14428 163 PKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSG 242 (583)
Q Consensus 163 ~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~ 242 (583)
++.++|+.+++.. + +++.+.+++.+.... ...|++.. .++||++|+++++ +++++|++ |+|+++
T Consensus 43 ~~~i~l~~~~~~~--~---~~~~~~~a~~~~~~~--~~~Y~~~~-~~~Lr~aia~~~~------v~~e~I~i--t~Gs~~ 106 (370)
T PRK09105 43 EGAVFLNANECPL--G---PSPAARDAAARSAAL--SGRYDLEL-EDDLRTLFAAQEG------LPADHVMA--YAGSSE 106 (370)
T ss_pred CCcEEecCCCCCC--C---CCHHHHHHHHHHHHH--hcCCCCch-HHHHHHHHHHHhC------cChhhEEE--cCChHH
Confidence 5678899888642 2 457777777665543 34586654 9999999999873 67899999 999999
Q ss_pred HHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCC
Q psy14428 243 SLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNP 322 (583)
Q Consensus 243 al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NP 322 (583)
++.++ +..++++||+|++++|+|+.|...++..|++++.+|+ ++ ++.+|++.+++. .++++++++||||||
T Consensus 107 ai~~~---~~~l~~~gd~Vli~~P~y~~~~~~~~~~g~~~~~v~~-~~-~~~~d~~~l~~~----~~~~~~v~l~nP~NP 177 (370)
T PRK09105 107 PLNYA---VLAFTSPTAGLVTADPTYEAGWRAADAQGAPVAKVPL-RA-DGAHDVKAMLAA----DPNAGLIYICNPNNP 177 (370)
T ss_pred HHHHH---HHHHcCCCCEEEEeCCChHHHHHHHHHcCCeEEEecC-CC-CCCCCHHHHHhc----CCCCCEEEEeCCCCC
Confidence 99985 4556677999999999999999999999999999998 44 467888888654 346788999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcC
Q psy14428 323 TGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTP 402 (583)
Q Consensus 323 TG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p 402 (583)
||.+++.++++++++.+ +++++||+||+|.+|... ++...+.+..+++|+++||||+||++|+|+||+++ +
T Consensus 178 TG~~~~~~~l~~l~~~~-~~~~~lIvDEaY~~f~~~------~s~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v~--~ 248 (370)
T PRK09105 178 TGTVTPRADIEWLLANK-PAGSVLLVDEAYIHFSDA------PSVVDLVAQRKDLIVLRTFSKLYGMAGMRLGLAAA--R 248 (370)
T ss_pred CCcCcCHHHHHHHHHhC-CCCcEEEEECchHHhccC------cchHHHHhhCCCEEEEecccHhhcCCccceeeeec--C
Confidence 99999999999999975 458999999999887532 13334445568999999999999999999999999 7
Q ss_pred CchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHhcCCh
Q psy14428 403 TSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDP 482 (583)
Q Consensus 403 ~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~l~~~ 482 (583)
+++++++.+. ...+++.+.|.++..++.++.
T Consensus 249 -----~~~i~~l~~~---~~~~~~~~~~~aa~~~L~~~~----------------------------------------- 279 (370)
T PRK09105 249 -----PDLLAKLARF---GHNPLPVPAAAAGLASLRDPK----------------------------------------- 279 (370)
T ss_pred -----HHHHHHHHhc---CCCCcCHHHHHHHHHHHhCHH-----------------------------------------
Confidence 5788888765 244578888888877776521
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCC
Q psy14428 483 KLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGL 534 (583)
Q Consensus 483 ~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l 534 (583)
| ++++++++.++|+.+.+.|++.+ +.+..+++++|. ..+
T Consensus 280 -----~---~~~~~~~~~~~r~~l~~~L~~~g----~~~~~~~~~f~~-~~~ 318 (370)
T PRK09105 280 -----L---VPQRRAENAAVREDTIAWLKKKG----YKCTPSQANCFM-VDV 318 (370)
T ss_pred -----H---HHHHHHHHHHHHHHHHHHHHHCC----CCcCCCCCcEEE-EeC
Confidence 1 34445556778888888888754 445567777764 444
|
|
| >PRK05387 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=308.16 Aligned_cols=276 Identities=16% Similarity=0.194 Sum_probs=215.3
Q ss_pred CCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchh
Q psy14428 163 PKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSG 242 (583)
Q Consensus 163 ~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~ 242 (583)
.+.|+|+.|++.. + +++.+.+++.+...+. ...|++. |.++||++||++++ +++++|++ |+|+++
T Consensus 24 ~~~i~l~~~~~~~--~---~~~~~~~a~~~~~~~~-~~~y~~~-~~~~lr~aia~~~~------~~~~~I~i--t~G~~~ 88 (353)
T PRK05387 24 AKLIKLNTNENPY--P---PSPKVLEAIRAALGDD-LRLYPDP-NADALRQAIAAYYG------LDPEQVFV--GNGSDE 88 (353)
T ss_pred cceeeccCCCCCC--C---CCHHHHHHHHHHhhhh-hhcCCCC-cHHHHHHHHHHHhC------CCHHHEEE--cCCHHH
Confidence 4679999999752 1 4578888887766532 4568655 67999999999984 67899999 999999
Q ss_pred HHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCC
Q psy14428 243 SLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNP 322 (583)
Q Consensus 243 al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NP 322 (583)
++.++ +..++++||.|++++|+|+.|...++..|++++.+|+ ++ ++++|++.+++ .+++++++|||||
T Consensus 89 al~~~---~~~l~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~v~~-~~-~~~~d~~~l~~-------~~~~v~~~~P~NP 156 (353)
T PRK05387 89 VLAHA---FLAFFNHDRPLLFPDITYSFYPVYAGLYGIPYEEIPL-DD-DFSIDVEDYLR-------PNGGIIFPNPNAP 156 (353)
T ss_pred HHHHH---HHHhcCCCCEEEEeCCCHHHHHHHHHHcCCEEEEeec-CC-CCCCCHHHHHh-------cCCEEEEeCCCCC
Confidence 99985 4456677999999999999999999999999999998 44 47889888753 3467889999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcC
Q psy14428 323 TGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTP 402 (583)
Q Consensus 323 TG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p 402 (583)
||.+++.+++++|+++++ +++||+||+|.+|... ...++ .+..+++|+++||||+||+||+|+||+++ +
T Consensus 157 tG~~~~~~~~~~l~~~~~--~~~livDe~y~~~~~~----~~~~~---~~~~~~~i~~~S~SK~~~~~GlR~G~~~~--~ 225 (353)
T PRK05387 157 TGIALPLAEIERILAANP--DSVVVIDEAYVDFGGE----SAIPL---IDRYPNLLVVQTFSKSRSLAGLRVGFAIG--H 225 (353)
T ss_pred CCCCCCHHHHHHHHHhCC--CcEEEEeCcccccCCc----chHHH---HhhCCCEEEEEehhHhhcchhhhceeeec--C
Confidence 999999999999998653 8999999999887421 22222 34457899999999999999999999998 7
Q ss_pred CchhHHHHHHHHHHHHhcc-ccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHhcCC
Q psy14428 403 TSDETERIMSQLKILIRGF-YSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEILSD 481 (583)
Q Consensus 403 ~~~~~~~li~~l~~~~~~~-~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~l~~ 481 (583)
+++++++.+..... ..+++.+.|.++..++.+..
T Consensus 226 -----~~~~~~l~~~~~~~~~~~~~~~~q~~~~~~l~~~~---------------------------------------- 260 (353)
T PRK05387 226 -----PELIEALNRVKNSFNSYPLDRLAQAGAIAAIEDEA---------------------------------------- 260 (353)
T ss_pred -----HHHHHHHHHhhccCCCCCcCHHHHHHHHHHhcCHH----------------------------------------
Confidence 58999988876543 45688999999888876521
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCC
Q psy14428 482 PKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLS 535 (583)
Q Consensus 482 ~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~ 535 (583)
| ++++++++.++|+.+.+.|++.+ +.. .+.+|.|.|..++
T Consensus 261 ------~---~~~~~~~~~~~~~~l~~~L~~~g----~~~-~~~~~~~~~~~~~ 300 (353)
T PRK05387 261 ------Y---FEETRAKVIATRERLVEELEALG----FEV-LPSKANFVFARHP 300 (353)
T ss_pred ------H---HHHHHHHHHHHHHHHHHHHHHCC----CeE-CCCcCcEEEEECC
Confidence 1 22344555677888888887754 332 3566788887765
|
|
| >PRK14808 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=301.33 Aligned_cols=230 Identities=13% Similarity=0.157 Sum_probs=180.9
Q ss_pred CCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCch
Q psy14428 162 HPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGS 241 (583)
Q Consensus 162 ~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~ 241 (583)
+.+.++|+.|+++. + +++.+.+++.+.........|++ .|.++||+++|+|+++.+ +++++|++ |+|++
T Consensus 18 ~~~~i~l~~~~~~~--~---~p~~~~~~~~~~~~~~~~~~Y~~-~~~~~Lr~aia~~~~~~~---~~~~~i~i--t~Ga~ 86 (335)
T PRK14808 18 KRDRTYLALNENPF--P---FPEDLVDEVFRRLNSDTLRIYYD-SPDEELIEKILSYLDTDF---LSKNNVSV--GNGAD 86 (335)
T ss_pred CCceeEecCCCCCC--C---CCHHHHHHHHHHhhhhhhhcCCC-CChHHHHHHHHHHhCCCC---CCcceEEE--cCCHH
Confidence 45789999999853 2 45777777766554332233654 489999999999998753 78999999 99999
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCC
Q psy14428 242 GSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHN 321 (583)
Q Consensus 242 ~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~N 321 (583)
+++.++ +..+ |.|++++|+|+.|...++..|++++.+|+ +++ +.++.. .+ .+++++++|||||
T Consensus 87 ~~i~~~---~~~~----d~v~v~~P~y~~~~~~~~~~g~~~~~v~~-~~~-~~~~~~----~~----~~~~~i~i~nP~N 149 (335)
T PRK14808 87 EIIYVM---MLMF----DRSVFFPPTYSCYRIFAKAVGAKFLEVPL-TKD-LRIPEV----NV----GEGDVVFIPNPNN 149 (335)
T ss_pred HHHHHH---HHHh----CcEEECCCCHHHHHHHHHHcCCeEEEecC-CCc-CCCChh----Hc----cCCCEEEEeCCCC
Confidence 999986 3333 67999999999999999999999999998 543 333321 12 2468899999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEc
Q psy14428 322 PTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLT 401 (583)
Q Consensus 322 PTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~ 401 (583)
|||.+++++++++|+ +++++||+||+|.+|... ...+ .....+++|+++||||+|++||+|+||+++
T Consensus 150 PTG~~~s~~~l~~l~----~~~~~ii~DE~Y~~f~~~----~~~~---~~~~~~~vi~~~S~SK~~~l~GlRvG~~v~-- 216 (335)
T PRK14808 150 PTGHVFEREEIERIL----KTGAFVALDEAYYEFHGE----SYVD---LLKKYENLAVIRTFSKAFSLAAQRIGYVVS-- 216 (335)
T ss_pred CCCCCcCHHHHHHHH----hcCCEEEEECchhhhcCC----chHH---HHHhCCCEEEEEechhhccCcccceEEEEe--
Confidence 999999999998886 479999999999998521 2222 223457999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCC
Q psy14428 402 PTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSD 439 (583)
Q Consensus 402 p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~ 439 (583)
| +++++++.+.+. ..+++.++|.++..++++
T Consensus 217 ~-----~~~~~~l~~~~~--~~~~~~~~q~a~~~~l~~ 247 (335)
T PRK14808 217 S-----EKFIDAYNRVRL--PFNVSYVSQMFAKVALDH 247 (335)
T ss_pred C-----HHHHHHHHHhcC--CCCCCHHHHHHHHHHHhC
Confidence 7 589999987653 367888999988777764
|
|
| >PRK14807 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-35 Score=305.92 Aligned_cols=277 Identities=16% Similarity=0.168 Sum_probs=214.3
Q ss_pred CCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchh
Q psy14428 163 PKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSG 242 (583)
Q Consensus 163 ~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~ 242 (583)
+..++|+.|+++. + +++.+.+++.+.+.......|++. +.++||+++|++++ +++++|++ |+|+++
T Consensus 22 ~~~~~l~~~~~~~--~---~p~~~~~a~~~~~~~~~~~~y~~~-~~~~lr~~ia~~~~------~~~~~i~i--t~G~~~ 87 (351)
T PRK14807 22 PYKYKMDANETPF--E---LPEEVIKNIQEIVKSSQVNIYPDP-TAEKLREELARYCS------VVPTNIFV--GNGSDE 87 (351)
T ss_pred CceeEccCCCCCC--C---CCHHHHHHHHHHhhcCcccCCCCc-cHHHHHHHHHHHhC------CCcccEEE--ecCHHH
Confidence 3558888888742 2 557888887776654335668754 47999999999973 67899999 999999
Q ss_pred HHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCC
Q psy14428 243 SLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNP 322 (583)
Q Consensus 243 al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NP 322 (583)
++.++ +..++++||+|++++|+|..+...++..|++++.+++ ++ ++++|++.+++.+. ..++++++++|||||
T Consensus 88 ~l~~~---~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~-~~-~~~~d~~~l~~~~~--~~~~k~v~l~~p~NP 160 (351)
T PRK14807 88 IIHLI---MLAFINKGDVVIYPHPSFAMYSVYSKIAGAVEIPVKL-KE-DYTYDVGSFIKVIE--KYQPKLVFLCNPNNP 160 (351)
T ss_pred HHHHH---HHHhcCCCCEEEEeCCChHHHHHHHHHcCCeEEEeec-CC-CCCCCHHHHHHHhh--ccCCCEEEEeCCCCC
Confidence 99985 4446677999999999999999999999999999998 53 47899999988874 236788889999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcC
Q psy14428 323 TGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTP 402 (583)
Q Consensus 323 TG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p 402 (583)
||.+++.++++++++ +++.++|+||+|.++. +. ...++ .+..+++|+++||||+||+||+|+||+++ |
T Consensus 161 tG~~~~~~~l~~l~~---~~~~~~ivDe~y~~~~-~~---~~~~~---~~~~~~vi~~~S~SK~~~~~GlRiG~~v~--~ 228 (351)
T PRK14807 161 TGSVIEREDIIKIIE---KSRGIVVVDEAYFEFY-GN---TIVDV---INEFENLIVLRTLSKAFGLAGLRVGYAVA--N 228 (351)
T ss_pred CCCCCCHHHHHHHHH---hCCCEEEEeCcchhhc-cc---chHHH---hhhCCCEEEEecchHhcccchhceeeeec--C
Confidence 999999999887765 4567899999999884 32 22222 24457999999999999999999999999 7
Q ss_pred CchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhh--ccCCCccchhhHHHHhc
Q psy14428 403 TSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRG--FYSNPPIHGARIVTEIL 479 (583)
Q Consensus 403 ~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~--~~~~~p~~g~~i~~~~l 479 (583)
+++++++...+. ..+++.++|.++..+++++.++++++..++....+.+.++. .+...|++|.|+|+++.
T Consensus 229 -----~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~i~~~ 300 (351)
T PRK14807 229 -----ENILKYLNLVKS--PYNINSLSQVIALKVLRTGVLKERVNYILNERERLIKELSKIPGIKVYPSKTNFILVKFK 300 (351)
T ss_pred -----HHHHHHHHHccC--CCCcCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCcEECcCCccEEEEEcC
Confidence 689999987654 35678999999999999877766665544333333333332 34456778889987664
|
|
| >PRK08056 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=302.57 Aligned_cols=283 Identities=11% Similarity=0.109 Sum_probs=214.4
Q ss_pred CCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCch
Q psy14428 162 HPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGS 241 (583)
Q Consensus 162 ~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~ 241 (583)
..+.++|+.|+++ .+ +++.+.+++.+.... ...|++ .+.++||++||+++. +++++|++ |+|++
T Consensus 19 ~~~~i~l~~~~~~--~~---~p~~~~~a~~~~~~~--~~~y~~-~~~~~lr~~ia~~~~------~~~~~i~i--t~Ga~ 82 (356)
T PRK08056 19 PDQLLDFSANINP--LG---MPVSLKRAIIDNLDC--AERYPD-VEYRHLHQALARHHQ------VPASWILA--GNGET 82 (356)
T ss_pred hhhEEEeccccCC--CC---CCHHHHHHHHHHHHh--cccCcC-ccHHHHHHHHHHHhC------cChhhEEE--CCCHH
Confidence 3467999998874 22 557788887765543 335765 579999999999973 67899999 99999
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCC-CCCCChhhHHHHHHcCCCCcEEEEeCCCC
Q psy14428 242 GSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNK-TNGLDFAGMMEDIKAMPERSILFLQTSSH 320 (583)
Q Consensus 242 ~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~-~~g~d~~~l~~~l~~~~~~~~~i~i~~p~ 320 (583)
+++.++ +..+ .+|+ |++++|+|..|...++..|++++.+|+ +++ ++.+| +.+++.+ .+++++++++|||
T Consensus 83 ~~l~~~---~~~l-~~g~-viv~~P~y~~~~~~~~~~g~~~~~v~~-~~~~~~~~~-~~~~~~~---~~~~k~v~l~~p~ 152 (356)
T PRK08056 83 ESIFAV---VSGL-KPRR-AMIVTPGFAEYRRALQQVGCEIRRYSL-READGWQLT-DAILEAL---TPDLDCLFLCTPN 152 (356)
T ss_pred HHHHHH---HHHh-CCCC-EEEeCCCcHHHHHHHHHcCCeEEEEec-ccccCCCcc-HHHHHhc---cCCCCEEEEeCCc
Confidence 999986 3334 3475 788899999999999999999999998 433 33344 2344444 4678899999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEE
Q psy14428 321 NPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVL 400 (583)
Q Consensus 321 NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~ 400 (583)
||||.+++.+++++|+++|++++++||+||+|.+|.+++ ....+ . ....+++|+++||||+||+||+|+||+++
T Consensus 153 NPTG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~--~~~~~--~-~~~~~~~i~~~S~SK~~~~~G~RiG~~v~- 226 (356)
T PRK08056 153 NPTGLLPERQLLQAIAERCKSLNIALILDEAFIDFIPDE--TGFIP--Q-LADNPHLWVLRSLTKFYAIPGLRLGYLVN- 226 (356)
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCEEEEecchhccCCcc--hHHHH--H-hccCCCEEEEEechhhccCcchhheeeec-
Confidence 999999999999999999999999999999999998754 12212 2 23357999999999999999999999998
Q ss_pred cCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHhcC
Q psy14428 401 TPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEILS 480 (583)
Q Consensus 401 ~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~l~ 480 (583)
++ +.+++++.+.. ...+++.++|.++..+++++.
T Consensus 227 -~~----~~~~~~l~~~~--~~~~~~~~~~~~a~~~l~~~~--------------------------------------- 260 (356)
T PRK08056 227 -SD----DAAVARMRRQQ--MPWSINAFAALAGEVILQDRA--------------------------------------- 260 (356)
T ss_pred -CC----HHHHHHHHHhC--CCCchhHHHHHHHHHHhCCHH---------------------------------------
Confidence 64 36777777543 345677888888887776421
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCCh
Q psy14428 481 DPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSA 536 (583)
Q Consensus 481 ~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~ 536 (583)
| ++++++++.++|+.+.+.|+++ +| +.+. +.+|+|.|..++.
T Consensus 261 -------~---~~~~~~~~~~~r~~l~~~L~~~--~~-~~~~-~~~~~~~~~~~~~ 302 (356)
T PRK08056 261 -------Y---QQATWQWLAEEGARFYQALCAL--PL-LTVW-PGRANYLFLRCER 302 (356)
T ss_pred -------H---HHHHHHHHHHHHHHHHHHHhcC--CC-cEEc-CCCCcEEEEEcCC
Confidence 2 3445566678888888888764 23 4333 4568899987753
|
|
| >PRK04870 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=303.02 Aligned_cols=281 Identities=13% Similarity=0.073 Sum_probs=219.3
Q ss_pred CCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCch
Q psy14428 162 HPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGS 241 (583)
Q Consensus 162 ~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~ 241 (583)
.++.++|+.|+++. + +++.+.+++.+.+.......|++ .|.++||+++|++++. . ..++|++ |+|++
T Consensus 25 ~~~~i~l~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~Y~~-~~~~~lr~~ia~~~~~----~-~~~~I~~--t~G~~ 91 (356)
T PRK04870 25 ATGMVKLDAMENPY--R---LPAELRAELGERLAEVALNRYPD-PRAAALKAALRAAMGV----P-AGADVLL--GNGSD 91 (356)
T ss_pred CCCceeCcCCCCCC--C---CCHHHHHHHHHHhhccccccCCC-CCHHHHHHHHHHHhCc----C-CCCcEEE--cCCHH
Confidence 35789999998742 2 56788888887665433567876 6889999999999852 1 2258999 99999
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCC
Q psy14428 242 GSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHN 321 (583)
Q Consensus 242 ~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~N 321 (583)
+++.++ +..++++||+|++++|+|..|...++..|++++.+|+ ++ ++++|++.+++.+. ..++++++++||||
T Consensus 92 ~~i~~~---~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~-~~-~~~~d~~~l~~~~~--~~~~~~v~l~~p~N 164 (356)
T PRK04870 92 ELIQLL---ALACAKPGATVLAPEPGFVMYRMSAKLAGLEFVGVPL-TA-DFTLDLPAMLAAIA--EHRPALVFLAYPNN 164 (356)
T ss_pred HHHHHH---HHHhcCCCCEEEECCCCHHHHHHHHHHcCCEEEEecC-CC-CCCCCHHHHHHHhh--cCCCCEEEEcCCCC
Confidence 999985 4456677999999999999999999999999999999 53 47899999988874 24678888999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEc
Q psy14428 322 PTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLT 401 (583)
Q Consensus 322 PTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~ 401 (583)
|||.+++.+++++|+++| ++++|+||+|.+|.+.. .. .. .+..+++|+++|||| +++||+|+||+++
T Consensus 165 PtG~~~~~~~~~~i~~~~---~~~ii~De~y~~~~~~~----~~--~~-~~~~~~vi~~~S~SK-~~~~GlRiG~~i~-- 231 (356)
T PRK04870 165 PTGNLFDDADVERIIEAA---PGLVVVDEAYQPFAGDS----WL--PR-LARFPNLLVMRTVSK-LGLAGLRLGYLAG-- 231 (356)
T ss_pred CCCCCCCHHHHHHHHHHC---CCEEEEECCchhhcCcc----hH--HH-HhhCCCEEEEecchh-hhhHHHhhhhhhC--
Confidence 999999999999999998 67899999999987532 11 12 244578999999999 8999999999999
Q ss_pred CCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHhcCC
Q psy14428 402 PTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEILSD 481 (583)
Q Consensus 402 p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~l~~ 481 (583)
+ +++++++.+.+ ...+++.++|.++..++++..
T Consensus 232 ~-----~~~i~~~~~~~--~~~~~~~~~q~~a~~~l~~~~---------------------------------------- 264 (356)
T PRK04870 232 H-----PAWIAELDKVR--PPYNVNVLTQATALFALEHVD---------------------------------------- 264 (356)
T ss_pred C-----HHHHHHHHHcc--CCCcCCHHHHHHHHHHHhCHH----------------------------------------
Confidence 7 57889888765 234678888888877776421
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCC
Q psy14428 482 PKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLS 535 (583)
Q Consensus 482 ~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~ 535 (583)
.+++.++++.++|+.+.+.|+++ || +.. .+.+|.|.|..++
T Consensus 265 ---------~~~~~~~~~~~~~~~l~~~L~~~--~~-~~~-~~~~~~~~~~~~~ 305 (356)
T PRK04870 265 ---------VLDAQAAQLRAERTRLAAALAAL--PG-VTV-FPSAANFILVRVP 305 (356)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHhC--CC-cEE-CCCCCeEEEEECC
Confidence 12334445567888888888774 33 433 4567788898876
|
|
| >COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=299.94 Aligned_cols=276 Identities=18% Similarity=0.201 Sum_probs=224.1
Q ss_pred CccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhH
Q psy14428 164 KKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGS 243 (583)
Q Consensus 164 ~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~a 243 (583)
+.++|+.++.. .+ +++.+.+++.+.... ...|+++ ...+|+++++++++. +++++|++ ++|+.+.
T Consensus 23 ~~i~LssNenP--~g---p~~~~~~~~~~~~~~--~~rYPd~-~~~~l~~a~a~~~~~-----~~~~~V~~--gnGsde~ 87 (356)
T COG0079 23 GIIKLSSNENP--YG---PPPKVIEAIRAALDK--LNRYPDP-DYRELRAALAEYYGV-----VDPENVLV--GNGSDEL 87 (356)
T ss_pred cceeecCCCCC--CC---CCHHHHHHHHHHHHh--hccCCCC-cHHHHHHHHHHHhCC-----CCcceEEE--cCChHHH
Confidence 57888877753 23 447777777666542 5667666 789999999999964 67899999 9999999
Q ss_pred HHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCC
Q psy14428 244 LRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPT 323 (583)
Q Consensus 244 l~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPT 323 (583)
|+++ .+.++.+||+|+++.|+|..|...++..|++++.+|. ++ +.+|++.+.+.+ .++++++++|||||||
T Consensus 88 i~~l---~~~~~~~gd~vl~~~Ptf~~Y~~~a~~~g~~~~~v~~-~~--~~~d~~~~~~~~---~~~~~lv~i~nPNNPT 158 (356)
T COG0079 88 IELL---VRAFVEPGDTVLIPEPTFSMYEIAAQLAGAEVVKVPL-KE--FRLDLDAILAAI---RDKTKLVFLCNPNNPT 158 (356)
T ss_pred HHHH---HHHhhcCCCEEEEcCCChHHHHHHHHhcCCeEEEecc-cc--cccCHHHHHHhh---hcCCCEEEEeCCCCCC
Confidence 9994 5667888999999999999999999999999999999 44 788999998887 4478999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCC
Q psy14428 324 GVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPT 403 (583)
Q Consensus 324 G~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~ 403 (583)
|..++.++++++++.+.+ +.+||+||+|.+|... +...+....+|+++++||||.||++|+|+||+++ +
T Consensus 159 G~~~~~~~l~~l~~~~~~-~~~vVvDEAY~eF~~~-------~~~~l~~~~~nlivlRTfSKa~gLAGlRlGy~ia--~- 227 (356)
T COG0079 159 GTLLPREELRALLEALPE-GGLVVIDEAYIEFSPE-------SSLELLKYPPNLIVLRTFSKAFGLAGLRVGYAIA--N- 227 (356)
T ss_pred CCCCCHHHHHHHHHhCCC-CcEEEEeCchhhcCCc-------hhhhhccCCCCEEEEEecHHhhhcchhceeeccC--C-
Confidence 999999999999999988 9999999999999852 1222223567899999999999999999999888 6
Q ss_pred chhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCCh-hhhhhhhhHHHHHHHHHHHHhhc-cC-CCccchhhHHHHhcC
Q psy14428 404 SDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDP-KLKAQCDETERIMSQLKILIRGF-YS-NPPIHGARIVTEILS 480 (583)
Q Consensus 404 ~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~r~~-~~-~~p~~g~~i~~~~l~ 480 (583)
+++++.|.++.. .+++|.++|.++..++++. .+++.+..+....+++...++.. +. +.|+.++|++++...
T Consensus 228 ----~~~i~~l~~vr~--p~~v~~~a~~aa~aal~~~~~~~~~~~~~~~~r~rl~~~l~~~~~~~v~pS~aNFvlv~~~~ 301 (356)
T COG0079 228 ----PELIAALNKVRP--PFNVSSPALAAAIAALRDADYLEESVERIREERERLYAALKALGLFGVFPSQANFVLVRVPD 301 (356)
T ss_pred ----HHHHHHHHHhcC--CCCCCHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecCCCCcEEEEECCC
Confidence 689999998754 3478999999999999976 34444444555555555444432 23 789999999988865
|
|
| >PRK04781 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=302.09 Aligned_cols=257 Identities=15% Similarity=0.165 Sum_probs=201.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCC-CEEEEcCCCChhhHHHHhh
Q psy14428 199 DHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGV-KTVYFPTPTWNGHVRFCTD 277 (583)
Q Consensus 199 ~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~g-d~Vlv~~P~y~~~~~~~~~ 277 (583)
...|+++. .++||++||++++ +++++|++ |+|+++++.++ +..++.+| |.|++++|+|..|...++.
T Consensus 53 ~~~Y~~~~-~~~lr~~ia~~~~------~~~~~I~~--t~G~~~~l~~~---~~~~~~~g~~~vlv~~p~y~~~~~~~~~ 120 (364)
T PRK04781 53 TRRYPDPQ-PPGLRSALAALYG------CAPEQLLI--GRGSDEAIDLL---VRALCVPGRDAVLVTPPVFGMYAVCARL 120 (364)
T ss_pred hccCCCCC-HHHHHHHHHHHhC------cChHHEEE--eCCHHHHHHHH---HHHhcCCCCCeEEEcCCChHHHHHHHHH
Confidence 45687654 6999999999983 67899999 99999999985 44566667 8999999999999999999
Q ss_pred cCCeEEEEecccC-CCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCC
Q psy14428 278 SRLNVGAYRYFDN-KTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLT 356 (583)
Q Consensus 278 ~G~~~~~v~~~d~-~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~ 356 (583)
.|++++.+|+.++ +++.+|++.+++.+. .+++++++++|||||||.+++.+++++|+++|+ ++++||+||+|.+|.
T Consensus 121 ~g~~~~~v~~~~~~~~~~~d~~~l~~~~~--~~~~~lv~l~~p~NPTG~~~~~~~~~~l~~~~~-~~~~iI~Deay~~f~ 197 (364)
T PRK04781 121 QNAPLVEVPLVDGADGFHADVPAIVAAAL--ASNAKLVFLCSPSNPAGSAIALDQIERALQALQ-GKALVVVDEAYGEFS 197 (364)
T ss_pred cCCEEEEEecCCCccCCCcCHHHHHHHHh--ccCCeEEEEcCCCCCCCCCcCHHHHHHHHHhCC-CCcEEEEeCcchhhc
Confidence 9999999998322 234467877765542 457889999999999999999999999999985 478999999999998
Q ss_pred CCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHH
Q psy14428 357 SGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEI 436 (583)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~ 436 (583)
++. +...+.+..++||+++||||+||+||+|+||+++ | +++++.+.+.+. ..+.+.+.|.++..+
T Consensus 198 ~~~------~~~~~~~~~~~vi~~~SfSK~~gl~GlRvGy~v~--~-----~~l~~~l~~~~~--~~~~~~~~~~~a~~~ 262 (364)
T PRK04781 198 DVP------SAVGLLARYDNLAVLRTLSKAHALAAARIGSLIA--N-----AELIAVLRRCQA--PYPVPTPCAALAEQA 262 (364)
T ss_pred CCc------chHHHHhhCCCEEEEecChhhcccccceeeeeeC--C-----HHHHHHHHhccC--CCCCCHHHHHHHHHH
Confidence 642 1222235568999999999999999999999999 7 689999988764 357889999988888
Q ss_pred hCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy14428 437 LSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSK 516 (583)
Q Consensus 437 l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~p 516 (583)
++++.+.. ..+.++.+.++|+.+.+.|+++ |
T Consensus 263 l~~~~~~~-----------------------------------------------~~~~~~~~~~~r~~l~~~L~~~--~ 293 (364)
T PRK04781 263 LSAPALAV-----------------------------------------------TARRVAEVRAERERLHAALAQL--P 293 (364)
T ss_pred HhcccHHH-----------------------------------------------HHHHHHHHHHHHHHHHHHHHhC--C
Confidence 87642211 1112224567888889999775 3
Q ss_pred CCcccccccccceeecCCC
Q psy14428 517 KNWDHITNQKGMFCYTGLS 535 (583)
Q Consensus 517 g~~~~~~~~~g~f~~~~l~ 535 (583)
| +....+.+|.|.|..++
T Consensus 294 ~-~~~~~p~~g~f~~~~~~ 311 (364)
T PRK04781 294 G-VRRVYPSQGNFLLVRFD 311 (364)
T ss_pred C-CCeECCCCCcEEEEEcC
Confidence 3 33346788999998875
|
|
| >PRK03967 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=300.18 Aligned_cols=269 Identities=17% Similarity=0.146 Sum_probs=204.3
Q ss_pred CCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchh
Q psy14428 163 PKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSG 242 (583)
Q Consensus 163 ~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~ 242 (583)
.+.++|+.+.+.. + +++.+.+++.+.........|+ ..|.++||+++|+|++ +++++|++ |+|+++
T Consensus 18 ~~~i~l~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~Y~-~~g~~~lr~~ia~~~~------~~~~~I~~--t~G~~~ 83 (337)
T PRK03967 18 NYRIWLDKNENPF--D---LPEELKEEIFEELKRVPFNRYP-HITSDPLREAIAEFYG------LDAENIAV--GNGSDE 83 (337)
T ss_pred CceEEecCCCCCC--C---CCHHHHHHHHHHhhcCccccCC-CCCHHHHHHHHHHHhC------cCcceEEE--cCCHHH
Confidence 3568899888642 1 4467777776655432245675 5799999999999995 68899999 999999
Q ss_pred HHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCC
Q psy14428 243 SLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNP 322 (583)
Q Consensus 243 al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NP 322 (583)
++.++ +..+ +||+|++++|+|+.|...++..|++++.+++ ++ ++++|++.+++.+ +++++++++|||||
T Consensus 84 ~l~~~---~~~~--~gd~V~v~~P~y~~~~~~~~~~g~~~~~v~~-~~-~~~~d~~~l~~~~----~~~~~v~~~~P~NP 152 (337)
T PRK03967 84 LISYL---VKLF--EGKHIVITPPTFGMYSFYAKLNGIPVIDVPL-KE-DFTIDGERIAEKA----KNASAVFICSPNNP 152 (337)
T ss_pred HHHHH---HHHh--CCCeEEEeCCChHHHHHHHHHcCCeEEEeec-CC-CCCcCHHHHHHhc----cCCCEEEEeCCCCC
Confidence 99875 3334 4999999999999999999999999999998 44 3789998887653 45678888999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcC
Q psy14428 323 TGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTP 402 (583)
Q Consensus 323 TG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p 402 (583)
||.+++.+++.+++ +++++||+||+|.+|... ... .+.+..+++|+++||||+||+||+|+||+++ +
T Consensus 153 tG~~~~~~~l~~i~----~~~~~ii~De~y~~~~~~----~~~---~~~~~~~~vi~l~S~SK~~~l~GlRiG~iv~--~ 219 (337)
T PRK03967 153 TGNLQPEEEILKVL----ETGKPVVLDEAYAEFSGK----SLI---GLIDEYPNLILLRTFSKAFGLAGIRAGYAIA--N 219 (337)
T ss_pred CCCCCCHHHHHHHH----hcCCEEEEECchhhhccc----chH---HHHhhCCCEEEEecchHhhcchhhhheeeec--C
Confidence 99999998877665 469999999999998632 222 2234457899999999999999999999999 7
Q ss_pred CchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccC-CCccchhhHHHHh
Q psy14428 403 TSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYS-NPPIHGARIVTEI 478 (583)
Q Consensus 403 ~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~-~~p~~g~~i~~~~ 478 (583)
+++++++.+.... .+++.++|.++..++++..+ +.+..+...+.+..+.+.+-. ..|++++|+|.++
T Consensus 220 -----~~~i~~~~~~~~~--~~~~~~~q~~~~~~l~~~~~--~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~ 287 (337)
T PRK03967 220 -----EEIIDALYRIKPP--FSLNILTMKIVRLALDHYDL--IEERIDYIIKERERVRRELGEYAYPSDANFLLLKL 287 (337)
T ss_pred -----HHHHHHHHhhcCC--CCCCHHHHHHHHHHHhCHHH--HHHHHHHHHHHHHHHHHHhccCcCCCCCcEEEEhH
Confidence 5899999887643 47789999999999986432 222233333333333322222 4678899998754
|
|
| >PRK07908 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-34 Score=296.58 Aligned_cols=276 Identities=14% Similarity=0.099 Sum_probs=213.1
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
..++.+||+.+++.. .+++.+.+++.+...+ ..+|++..|.++||+++|++++ +++++|++ |+|+
T Consensus 20 ~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~--~~~Y~~~~g~~~lr~aia~~~~------~~~~~I~i--t~Ga 84 (349)
T PRK07908 20 AGPGLLDFAVNVRHD-----TPPEWLRERLAARLGD--LAAYPSTEDERRARAAVAARHG------RTPDEVLL--LAGA 84 (349)
T ss_pred CCCCeEEecCCCCCC-----CCCHHHHHHHHHHhhH--hhcCCCccchHHHHHHHHHHhC------cChhhEEE--CCCH
Confidence 467889999988742 2567788888776643 4679989999999999999973 57899999 9999
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCC
Q psy14428 241 SGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSH 320 (583)
Q Consensus 241 ~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~ 320 (583)
++++.++ +. + .+ +.++++.|+|..+...++..|++++.+|+ +++ +++|++.+ .++++++++||||
T Consensus 85 ~~al~~~---~~-l-~~-~~viv~~P~y~~~~~~~~~~G~~i~~v~~-~~~-~~~d~~~l-------~~~~~~i~l~np~ 149 (349)
T PRK07908 85 AEGFALL---AR-L-RP-RRAAVVHPSFTEPEAALRAAGIPVHRVVL-DPP-FRLDPAAV-------PDDADLVVIGNPT 149 (349)
T ss_pred HHHHHHH---Hh-c-CC-CeEEEeCCCChHHHHHHHHcCCEEEeecc-Ccc-cCcChhHh-------ccCCCEEEEcCCC
Confidence 9999985 33 3 44 46778999999999999999999999999 543 67887643 3467799999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEE
Q psy14428 321 NPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVL 400 (583)
Q Consensus 321 NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~ 400 (583)
||||.+++.+++.++ |+ ++.++|+||+|.++..+. ..++.+. ..+++|+++||||+|++||+|+||+++
T Consensus 150 NPTG~~~~~~~l~~l---~~-~~~~iIvDe~y~~~~~~~----~~~l~~~--~~~~~i~i~S~SK~~~l~GlRiG~~~~- 218 (349)
T PRK07908 150 NPTSVLHPAEQLLAL---RR-PGRILVVDEAFADAVPGE----PESLAGD--DLPGVLVLRSLTKTWSLAGLRVGYALG- 218 (349)
T ss_pred CCCCCCcCHHHHHHH---Hh-cCCEEEEECcchhhccCC----ccccccc--cCCCEEEEeecccccCCccceeeeeec-
Confidence 999999998876554 54 477888899999986432 2344332 346899999999999999999999999
Q ss_pred cCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHhcC
Q psy14428 401 TPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEILS 480 (583)
Q Consensus 401 ~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~l~ 480 (583)
+ +++++++.+.... .+.+.+.|.++..++++..
T Consensus 219 -~-----~~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~--------------------------------------- 251 (349)
T PRK07908 219 -A-----PDVLARLTRGRAH--WPVGTLQLEAIAACCAPRA--------------------------------------- 251 (349)
T ss_pred -C-----HHHHHHHHhcCCC--CCccHHHHHHHHHHhcccc---------------------------------------
Confidence 7 5788888875443 4566677776666655311
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCCh
Q psy14428 481 DPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSA 536 (583)
Q Consensus 481 ~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~ 536 (583)
.++++++++++.++|+.+.+.|++.+ +.+..+++|+|.|..++.
T Consensus 252 --------~~~~~~~~~~~~~~r~~l~~~L~~~~----~~~~~p~~g~~~~~~~~~ 295 (349)
T PRK07908 252 --------VAEAAADAARLAADRAEMVAGLRAVG----ARVVDPAAAPFVLVRVPD 295 (349)
T ss_pred --------hHHHHHHHHHHHHHHHHHHHHHHhCC----cEeccCCCceEEEEECCc
Confidence 12345567777888999999998753 556677899999998874
|
|
| >PRK06425 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-34 Score=296.42 Aligned_cols=246 Identities=12% Similarity=0.090 Sum_probs=186.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcC
Q psy14428 200 HEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSR 279 (583)
Q Consensus 200 ~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G 279 (583)
..|+ ..-..+||+++|+|++ +++++|++ |+|+++++.++. ..+ .+| .|++++|+|+.|...++..|
T Consensus 35 ~~Yp-~~~~~~lr~~ia~~~~------~~~~~I~i--t~Gs~~~l~~~~---~~~-~~~-~vv~~~P~y~~y~~~~~~~G 100 (332)
T PRK06425 35 SIYP-EISYTDIEDQIKIYTQ------GLKIKVLI--GPGLTHFIYRLL---SYI-NVG-NIIIVEPNFNEYKGYAFTHG 100 (332)
T ss_pred ccCc-CcCHHHHHHHHHHHhC------CCcceEEE--CCCHHHHHHHHH---HHh-CCC-cEEEeCCChHHHHHHHHHcC
Confidence 4474 4458999999999986 46899999 999999999863 333 446 47777999999999999999
Q ss_pred CeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCC
Q psy14428 280 LNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGD 359 (583)
Q Consensus 280 ~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~ 359 (583)
++++.+|+ +. .++|.+.++ ..+++++++||||||||.+++.+++++|+++|++++++||+||+|.+|.+++
T Consensus 101 ~~v~~vp~-~~--~~~~~~~l~------~~~~k~v~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~~ 171 (332)
T PRK06425 101 IRISALPF-NL--INNNPEILN------NYNFDLIFIVSPDNPLGNLISRDSLLTISEICRKKGALLFIDEAFIDFVPNR 171 (332)
T ss_pred CeEEEEeC-Cc--ccCcHHHHh------hcCCCEEEEeCCCCCcCCccCHHHHHHHHHHHHHcCCEEEEecchhcccccc
Confidence 99999998 44 345544332 1367788889999999999999999999999999999999999999998754
Q ss_pred CCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCC
Q psy14428 360 FDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSD 439 (583)
Q Consensus 360 ~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~ 439 (583)
..+...+.+..++||+++||||+||+||+|+||+++ | +++++.+.+.... .+.+.+.+ .++..
T Consensus 172 ----~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiGy~v~--~-----~~li~~l~~~~~~--~~~~~~~~----~~l~~ 234 (332)
T PRK06425 172 ----AEEDVLLNRSYGNVIIGRSLTKILGIPSLRIGYIAT--D-----DYNMKISRKITEP--WSVCDPAI----DFIRS 234 (332)
T ss_pred ----chhHHHHhccCCCEEEEeecHHhcCCchhhheeeec--C-----HHHHHHHHHcCCC--CccCHHHH----HHHHH
Confidence 123444445557999999999999999999999999 7 5788888864322 12222211 11111
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Q psy14428 440 PKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNW 519 (583)
Q Consensus 440 ~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~ 519 (583)
..+..+++++++.+.++|+.+.+.|++.+ +
T Consensus 235 ----------------------------------------------~~~~~~~~~~~~~~~~~r~~l~~~L~~~g----~ 264 (332)
T PRK06425 235 ----------------------------------------------IDLDYVAKHSLDIMENERSYLINNLEAMG----F 264 (332)
T ss_pred ----------------------------------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHCC----C
Confidence 01123356677888999999999998864 4
Q ss_pred ccccccccceeecCCC
Q psy14428 520 DHITNQKGMFCYTGLS 535 (583)
Q Consensus 520 ~~~~~~~g~f~~~~l~ 535 (583)
....+.+|.|.|..++
T Consensus 265 ~~~~~~~g~f~~~~~~ 280 (332)
T PRK06425 265 RAAGDPSANFITFMIP 280 (332)
T ss_pred EECCCCCceEEEEEcC
Confidence 4444456788888775
|
|
| >PRK06225 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=297.65 Aligned_cols=244 Identities=16% Similarity=0.177 Sum_probs=199.4
Q ss_pred CCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCch
Q psy14428 162 HPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGS 241 (583)
Q Consensus 162 ~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~ 241 (583)
..+.|+|+.+... ..+++.+.+++.+.........|++..|.++||+++|++++ +++++|++ |+|++
T Consensus 27 ~~~~i~l~~~~~~-----~~~~~~~~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~------~~~~~v~~--~~g~t 93 (380)
T PRK06225 27 DKEMIWMGQNTNH-----LGPHEEVREAMIRCIEEGEYCKYPPPEGFPELRELILKDLG------LDDDEALI--TAGAT 93 (380)
T ss_pred cCCeEEccCCCCC-----CCCCHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHhcC------CCCCcEEE--eCCHH
Confidence 4578999987763 22567888888888765445679999999999999999974 56789999 99999
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccC-CCCCCChhhHHHHHHcCCCCcEEEEeCCCC
Q psy14428 242 GSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDN-KTNGLDFAGMMEDIKAMPERSILFLQTSSH 320 (583)
Q Consensus 242 ~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~-~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~ 320 (583)
+++.++ +..++.+||+|++++|+|..+...++..|++++.+++.++ .++.+|++.+++.+ .+++++++++|||
T Consensus 94 ~al~~~---~~~~~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~---~~~~~~v~l~~p~ 167 (380)
T PRK06225 94 ESLYLV---MRAFLSPGDNAVTPDPGYLIIDNFASRFGAEVIEVPIYSEECNYKLTPELVKENM---DENTRLIYLIDPL 167 (380)
T ss_pred HHHHHH---HHHhcCCCCEEEEcCCCCcchHHHHHHhCceEEeeccccccCCccCCHHHHHhhc---CCCceEEEEeCCC
Confidence 999985 4456677999999999999999999999999999997322 24678999998877 4568888889999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEE
Q psy14428 321 NPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVL 400 (583)
Q Consensus 321 NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~ 400 (583)
||||.+++.+++++|+++|+++|++||+||+|.+|..+. . +...+ ..++++++.||||.+|++|+|+||+++
T Consensus 168 NptG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~---~--~~~~~--~~~~~i~~~s~SK~~g~~G~RiG~i~~- 239 (380)
T PRK06225 168 NPLGSSYTEEEIKEFAEIARDNDAFLLHDCTYRDFAREH---T--LAAEY--APEHTVTSYSFSKIFGMAGLRIGAVVA- 239 (380)
T ss_pred CCCCcCCCHHHHHHHHHHHHHCCcEEEEehhHHHHhccC---C--chhhc--CCCCEEEEeechhhcCCccceeEEEec-
Confidence 999999999999999999999999999999999886542 1 12222 246899999999999999999999999
Q ss_pred cCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCC
Q psy14428 401 TPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSD 439 (583)
Q Consensus 401 ~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~ 439 (583)
+ +++++++..... ...+++.++|.++...++.
T Consensus 240 -~-----~~l~~~~~~~~~-~~~~~~~~~~~~a~~~l~~ 271 (380)
T PRK06225 240 -T-----PDLIEVVKSIVI-NDLGTNVIAQEAAIAGLKV 271 (380)
T ss_pred -C-----HHHHHHHHHHHh-cccCCCHHHHHHHHHHHhc
Confidence 7 578888887643 3466788888888777653
|
|
| >PRK03321 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=299.01 Aligned_cols=280 Identities=17% Similarity=0.179 Sum_probs=215.9
Q ss_pred CCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchh
Q psy14428 163 PKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSG 242 (583)
Q Consensus 163 ~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~ 242 (583)
++.|+|+.+.+.. + +++.+.+++.+.... ...| +..|.++||+++|++++ +++++|++ |+|+++
T Consensus 22 ~~~i~l~~~~~~~--~---~~~~~~~a~~~~~~~--~~~y-~~~g~~~lr~~ia~~~~------~~~~~I~~--~~G~~~ 85 (352)
T PRK03321 22 PGAIKLSSNETPF--G---PLPSVRAAIARAAAG--VNRY-PDMGAVELRAALAEHLG------VPPEHVAV--GCGSVA 85 (352)
T ss_pred ccceeccCCCCCC--C---CCHHHHHHHHHHHHh--cCcC-CCCcHHHHHHHHHHHhC------cCHHHEEE--CCCHHH
Confidence 3578999998752 2 456788887776543 4457 46799999999999985 67889999 999999
Q ss_pred HHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCC
Q psy14428 243 SLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNP 322 (583)
Q Consensus 243 al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NP 322 (583)
++.++ +..++.+||+|+++.|+|..|...++..|++++.+|+ +++ +++|++.+++.+ .+++++++++|||||
T Consensus 86 ~l~~~---~~~~~~~gd~Vli~~p~y~~~~~~~~~~g~~~~~v~~-~~~-~~~~~~~l~~~~---~~~~~~v~l~~p~NP 157 (352)
T PRK03321 86 LCQQL---VQATAGPGDEVIFAWRSFEAYPILVQVAGATPVQVPL-TPD-HTHDLDAMAAAI---TDRTRLIFVCNPNNP 157 (352)
T ss_pred HHHHH---HHHhcCCCCEEEeCCCCHHHHHHHHHHcCCEEEEccC-CCC-CCCCHHHHHHhh---ccCCCEEEEeCCCCC
Confidence 98875 4456677999999999999999999999999999998 543 688999998877 456788888999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcC
Q psy14428 323 TGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTP 402 (583)
Q Consensus 323 TG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p 402 (583)
||.+++.+++.++++.+ +++++||+||+|.+|.+++. ...++..+ +..+++|+++||||.||+||+|+||+++ |
T Consensus 158 tG~~~~~~~l~~l~~~~-~~~~~ii~De~y~~~~~~~~--~~~~~~~~-~~~~~vi~~~S~SK~~g~~GlRiG~~v~--~ 231 (352)
T PRK03321 158 TGTVVTPAELARFLDAV-PADVLVVLDEAYVEYVRDDD--VPDGLELV-RDHPNVVVLRTFSKAYGLAGLRVGYAVG--H 231 (352)
T ss_pred cCCCcCHHHHHHHHHhC-CCCeEEEEechHHHhccCcC--CCcHHHHH-hhCCCEEEEecchHHhhhHHHhhhhhcC--C
Confidence 99999999999998876 57999999999999998752 22334333 4557999999999999999999999999 7
Q ss_pred CchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCC-hhhhhhhhhHHHHHHHHHHHHhh-ccCCCccchhhHHHHhc
Q psy14428 403 TSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSD-PKLKAQCDETERIMSQLKILIRG-FYSNPPIHGARIVTEIL 479 (583)
Q Consensus 403 ~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~l~~~~r~-~~~~~p~~g~~i~~~~l 479 (583)
+++++.+.+. ....++|.++|.++...+.+ +.+.+++++..+....+.+.++. .+..+|.+|.|+|..+.
T Consensus 232 -----~~~~~~~~~~--~~~~~~s~~~q~~a~~~l~~~~~~~~~~~~~~~~r~~~~~~L~~~~~~~~~~~g~~i~i~l~ 303 (352)
T PRK03321 232 -----PEVIAALRKV--AVPFSVNSLAQAAAIASLAAEDELLERVDAVVAERDRVRAALRAAGWTVPPSQANFVWLPLG 303 (352)
T ss_pred -----HHHHHHHHHh--cCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCCCccCCCCCCEEEEeCC
Confidence 5899998875 34568899999988888864 33333333322222222222222 34556678899888763
|
|
| >PRK01688 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-34 Score=296.70 Aligned_cols=247 Identities=16% Similarity=0.167 Sum_probs=193.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCC-CEEEEcCCCChhhHHHHhh
Q psy14428 199 DHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGV-KTVYFPTPTWNGHVRFCTD 277 (583)
Q Consensus 199 ~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~g-d~Vlv~~P~y~~~~~~~~~ 277 (583)
...|++. ...+|+++++++++ +++++|++ |+|+++++.++ +..++.+| |+|++++|+|..|...++.
T Consensus 51 ~~~Yp~~-~~~~l~~~~a~~~g------~~~~~I~~--~~Gs~e~i~~~---~~~~~~~g~~~vli~~P~y~~y~~~~~~ 118 (351)
T PRK01688 51 LNRYPEC-QPKAVIENYAAYAG------VKPEQVLV--SRGADEGIELL---IRAFCEPGKDAILYCPPTYGMYSVSAET 118 (351)
T ss_pred cccCCCC-ChHHHHHHHHHHhC------CCHHHEEE--cCCHHHHHHHH---HHHhcCCCCCEEEEcCCCHHHHHHHHHH
Confidence 4457544 45899999999874 67899999 99999999996 44456666 9999999999999999999
Q ss_pred cCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCC
Q psy14428 278 SRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTS 357 (583)
Q Consensus 278 ~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~ 357 (583)
.|++++.+|+ ++ ++++|++.+++.+ ++++++++||||||||.+++.+++++|++.|++ +.+||+||+|.+|..
T Consensus 119 ~G~~~~~v~~-~~-~~~~d~~~l~~~~----~~~~lv~l~nPnNPTG~~~~~~~l~~l~~~~~~-~~~vivDEay~~f~~ 191 (351)
T PRK01688 119 IGVEIRTVPT-LD-NWQLDLPAIADNL----DGVKVVYVCSPNNPTGNLINPQDLRTLLELTRG-KAIVVADEAYIEFCP 191 (351)
T ss_pred cCCEEEEeec-CC-CCCCCHHHHHHhc----cCCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCC-CcEEEEECchhhcCC
Confidence 9999999998 44 4789999998765 367899999999999999999999999999976 678999999999974
Q ss_pred CCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHh
Q psy14428 358 GDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEIL 437 (583)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l 437 (583)
.. +...+....+++|+++||||.||+||+|+||+++ + +++++.+.+... .++++.+.|.++..++
T Consensus 192 ~~------s~~~~~~~~~n~iv~rSfSK~~glaGlRiGy~i~--~-----~~~i~~l~~~~~--~~~v~~~~~~~a~~~L 256 (351)
T PRK01688 192 QA------SLAGWLAEYPHLVILRTLSKAFALAGLRCGFTLA--N-----EEVINLLLKVIA--PYPLSTPVADIAAQAL 256 (351)
T ss_pred CC------ChHHHHhhCCCEEEEecchHhhcCHHHHHhHHhC--C-----HHHHHHHHhccC--CCCCCHHHHHHHHHHH
Confidence 32 2333345568999999999999999999999998 6 588998887643 3567888899998998
Q ss_pred CCh---hhhhhhhhHHHHHHHHHHHHhh--cc-CCCccchhhHHHHhc
Q psy14428 438 SDP---KLKAQCDETERIMSQLKILIRG--FY-SNPPIHGARIVTEIL 479 (583)
Q Consensus 438 ~~~---~~~~~~~~~~~~~~~l~~~~r~--~~-~~~p~~g~~i~~~~l 479 (583)
++. .++++.+..+...+.+.+.++. .+ ...|++++|+|+++.
T Consensus 257 ~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~ps~~nfi~~~~~ 304 (351)
T PRK01688 257 SPQGIAAMRERVAEINANRQWLIAALKEIPCVEQVFDSETNYILARFT 304 (351)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeECCCCCcEEEEEcC
Confidence 863 3333333333323333333332 23 256889999998764
|
|
| >PRK02731 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=289.92 Aligned_cols=240 Identities=18% Similarity=0.187 Sum_probs=195.2
Q ss_pred CCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCch
Q psy14428 162 HPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGS 241 (583)
Q Consensus 162 ~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~ 241 (583)
..+.++|+.+++. .+ +++.+.+++.+.... ...|++..+ .+||+++|++++ +++++|++ |+|++
T Consensus 31 ~~~~i~l~~~~~~--~~---~~~~~~~a~~~~~~~--~~~y~~~~~-~~lr~~ia~~~~------~~~~~i~~--t~G~~ 94 (367)
T PRK02731 31 IADIIKLASNENP--LG---PSPKAIEAIRAAADE--LHRYPDGSG-FELKAALAEKFG------VDPERIIL--GNGSD 94 (367)
T ss_pred CCceEEecCCCCC--CC---CCHHHHHHHHHHHHh--hcCCCCCcH-HHHHHHHHHHhC------cCHHHEEE--cCCHH
Confidence 4568999999864 23 346788877776543 467876654 799999999983 56889999 99999
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCC
Q psy14428 242 GSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHN 321 (583)
Q Consensus 242 ~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~N 321 (583)
+++.++ +..++++||+|++++|+|..+...++..|++++.+|+ + ++++|++.+++.+ .+++++++++||||
T Consensus 95 ~~l~~~---~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~-~--~~~~~~~~l~~~~---~~~~~~v~l~~p~n 165 (367)
T PRK02731 95 EILELL---ARAYLGPGDEVIYSEHGFAVYPIAAQAVGAKPVEVPA-K--DYGHDLDAMLAAV---TPRTRLVFIANPNN 165 (367)
T ss_pred HHHHHH---HHHhcCCCCEEEEecCCHHHHHHHHHHcCCeEEEecc-c--CCCCCHHHHHHHh---CCCCcEEEEeCCCC
Confidence 999885 3445667999999999999999989999999999988 3 3788999998887 45778888999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEc
Q psy14428 322 PTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLT 401 (583)
Q Consensus 322 PTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~ 401 (583)
|||.+++.+++++|++.|+ ++++||+||+|.++.+++. ...++.. .+..+++|+++||||.||++|+|+||+++
T Consensus 166 ptG~~~~~~~l~~l~~~~~-~~~~li~De~y~~~~~~~~--~~~~~~~-~~~~~~~i~~~S~SK~~g~~G~RiG~l~~-- 239 (367)
T PRK02731 166 PTGTYLPAEEVERFLAGVP-PDVLVVLDEAYAEYVRRKD--YEDGLEL-VAKFPNVVVTRTFSKAYGLAGLRVGYGIA-- 239 (367)
T ss_pred CCCcCCCHHHHHHHHHhCC-CCcEEEEECcHHHhccCcC--cccHHHH-HhhcCCEEEEeeehHhhcCcccceeeeeC--
Confidence 9999999999999999875 6999999999999988642 2233433 34567899999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCC
Q psy14428 402 PTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSD 439 (583)
Q Consensus 402 p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~ 439 (583)
+ +++++++.+... ..+.+.++|.++..++++
T Consensus 240 ~-----~~~~~~l~~~~~--~~~~~~~~~~~a~~~l~~ 270 (367)
T PRK02731 240 P-----PEIIDALNRVRQ--PFNVNSLALAAAVAALDD 270 (367)
T ss_pred C-----HHHHHHHHHccC--CCCCCHHHHHHHHHHhCC
Confidence 7 578888887654 246678999999888865
|
|
| >PRK05664 threonine-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-33 Score=286.55 Aligned_cols=191 Identities=16% Similarity=0.133 Sum_probs=158.2
Q ss_pred CCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCe
Q psy14428 202 YANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLN 281 (583)
Q Consensus 202 Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~ 281 (583)
|+. +..+||++||++++ +++|++ |+|+++++.++ + ...+||+|++++|+|+.|...++..|++
T Consensus 47 yp~--~~~~Lr~~ia~~~~--------~~~I~i--t~Gs~~al~~~--~---~~~~gd~v~v~~P~y~~~~~~~~~~g~~ 109 (330)
T PRK05664 47 LPE--TDDGLEAAARAYYG--------APQLLP--VAGSQAAIQAL--P---RLRAPGRVGVLSPCYAEHAHAWRRAGHQ 109 (330)
T ss_pred CCC--ChHHHHHHHHHHhC--------CCCEEE--CcCHHHHHHHH--H---HccCCCEEEEcCCChHHHHHHHHHcCCe
Confidence 654 34899999999985 379999 99999999985 2 2346999999999999999999999999
Q ss_pred EEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCC
Q psy14428 282 VGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFD 361 (583)
Q Consensus 282 ~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~ 361 (583)
++.+|+ + .+++.+ +++++++++|||||||.+++.+++++|+++|++++++||+||+|.++...
T Consensus 110 ~~~v~~-~---------~~~~~~----~~~~~v~l~nP~NPTG~~~s~~~l~~l~~~~~~~~~~iI~DE~y~~~~~~--- 172 (330)
T PRK05664 110 VRELDE-A---------EVEAAL----DSLDVLVVVNPNNPTGRRFDPARLLAWHARLAARGGWLVVDEAFMDNTPQ--- 172 (330)
T ss_pred EEEech-h---------hHhhhh----cCCCEEEEeCCcCCCCCccCHHHHHHHHHHHHhcCCEEEEECCcccCCCc---
Confidence 999987 2 122333 24567888999999999999999999999999999999999999887521
Q ss_pred CchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCC
Q psy14428 362 KDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSD 439 (583)
Q Consensus 362 ~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~ 439 (583)
+++.++. ..++||+++||||+||+||+|+||+++ | +++++.+.+... ..+.+.+.|.++..++++
T Consensus 173 ---~s~~~~~-~~~~vi~~~SfSK~~gl~GlRiG~~v~--~-----~~l~~~~~~~~~--~~~~~~~~~~~~~~~L~~ 237 (330)
T PRK05664 173 ---HSLAACA-HRPGLIVLRSFGKFFGLAGARLGFVLA--E-----PALLRALAELLG--PWTVSGPTRWLAQAALAD 237 (330)
T ss_pred ---ccccccc-cCCCEEEEeeccccccCCCcceEEEEe--C-----HHHHHHHHHhcC--CCCCCHHHHHHHHHHHhC
Confidence 2344443 457899999999999999999999999 7 589999987644 346788999998888876
|
|
| >PRK04635 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=293.49 Aligned_cols=268 Identities=14% Similarity=0.122 Sum_probs=200.0
Q ss_pred CCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchh
Q psy14428 163 PKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSG 242 (583)
Q Consensus 163 ~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~ 242 (583)
...++|+.+++. .+ +++.+ ... ....|++. +.++||+++|++++ +++++|++ |+|+++
T Consensus 31 ~~~~~l~~ne~~--~~---~~~~~-----~~~---~~~~Yp~~-~~~~Lr~aia~~~~------~~~~~I~i--t~Gs~~ 88 (354)
T PRK04635 31 RGDIWINANESP--FN---NEYKL-----DLA---RLNRYPEC-QPPELINAYSAYAG------VAPEQILT--SRGADE 88 (354)
T ss_pred CCcEEeeCCCCC--CC---CChhh-----hhH---HhccCCCC-CHHHHHHHHHHHhC------cCHHHEEE--eCCHHH
Confidence 345888888874 22 22222 111 14558765 58999999999873 68999999 999999
Q ss_pred HHHHHHHHHHHhCCCC-CEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCC
Q psy14428 243 SLRVGTAFLERFYPGV-KTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHN 321 (583)
Q Consensus 243 al~l~~~~l~~~~~~g-d~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~N 321 (583)
++.++ +..++.+| |+|++++|+|+.|...++..|++++.+|+ ++ ++++|++.++ .+ ++++++++|||||
T Consensus 89 ~i~~~---~~~~~~~g~d~vlv~~P~y~~y~~~~~~~g~~v~~v~~-~~-~~~~~~~~l~-~~----~~~~li~i~nP~N 158 (354)
T PRK04635 89 AIELL---IRAFCEPGQDSIACFGPTYGMYAISAETFNVGVKALPL-TA-DYQLPLDYIE-QL----DGAKLVFICNPNN 158 (354)
T ss_pred HHHHH---HHHhcCCCCCeEEEcCCChHHHHHHHHHcCCEEEEEec-CC-CCCCCHHHHH-hc----cCCCEEEEeCCCC
Confidence 99995 44566667 99999999999999999999999999999 54 3678887775 22 4788999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEc
Q psy14428 322 PTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLT 401 (583)
Q Consensus 322 PTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~ 401 (583)
|||.+++.+++++|+++|++ ++||+||+|.+|.... +...+....+++|+++||||.||+||+|+||+++
T Consensus 159 PTG~~~~~~~l~~l~~~~~~--~~vivDeay~~~~~~~------s~~~~~~~~~~~iv~~S~SK~~~l~GlRlG~~i~-- 228 (354)
T PRK04635 159 PTGTVIDRADIEQLIEMTPD--AIVVVDEAYIEFCPEY------SVADLLASYPNLVVLRTLSKAFALAGARCGFTLA-- 228 (354)
T ss_pred CCCccCCHHHHHHHHHhCCC--cEEEEeCchHhhccCc------chHHHHhhCCCEEEEechHHHhhhhHHHHhhhhC--
Confidence 99999999999999998764 9999999999987432 2333334567999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhh---hhhhhHHHHHHHHHHHHhh--ccCCCccchhhHHH
Q psy14428 402 PTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLK---AQCDETERIMSQLKILIRG--FYSNPPIHGARIVT 476 (583)
Q Consensus 402 p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~---~~~~~~~~~~~~l~~~~r~--~~~~~p~~g~~i~~ 476 (583)
+ +++++.+.+... ..+.+.+.|.++..++++...+ ++.+..+...+.+.+.++. .+...|++|+|+|+
T Consensus 229 ~-----~~~~~~l~~~~~--~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~g~f~~~ 301 (354)
T PRK04635 229 N-----EELIEILMRVIA--PYPVPLPVSEIATQALSEAGLARMKFQVLDLNAQGARLQAALSMYGGAKVLEGNGNYVLA 301 (354)
T ss_pred C-----HHHHHHHHhhcC--CCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCCceECCCCCcEEEE
Confidence 6 578888876433 4577888999999998764332 2222222222223333332 24455667889987
Q ss_pred Hhc
Q psy14428 477 EIL 479 (583)
Q Consensus 477 ~~l 479 (583)
++.
T Consensus 302 ~~~ 304 (354)
T PRK04635 302 KFD 304 (354)
T ss_pred ECC
Confidence 664
|
|
| >TIGR01141 hisC histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-32 Score=283.50 Aligned_cols=282 Identities=19% Similarity=0.200 Sum_probs=219.8
Q ss_pred CCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCch
Q psy14428 162 HPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGS 241 (583)
Q Consensus 162 ~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~ 241 (583)
..+.|+|++|.++. + +++.+.+++.+.... ...|+++.| ++||+++|++++ +++++|++ |+|++
T Consensus 18 ~~~~i~l~~~~~~~--~---~~~~~~~a~~~~~~~--~~~y~~~~~-~~lr~~ia~~~~------~~~~~i~~--~~G~~ 81 (346)
T TIGR01141 18 GKEVIKLNSNENPF--G---PPPKAKEALRAEADK--LHRYPDPDP-AELKQALADYYG------VDPEQILL--GNGSD 81 (346)
T ss_pred CCceEEccCCCCCC--C---CCHHHHHHHHHhHHH--hhcCCCCCH-HHHHHHHHHHhC------cChHHEEE--cCCHH
Confidence 35789999999842 2 456778877766532 467887776 999999999986 56789999 99999
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCC
Q psy14428 242 GSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHN 321 (583)
Q Consensus 242 ~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~N 321 (583)
+++..+ +..+..+||+|++++|+|+.+...++..|++++.+++ +++ +.+|++.+++.+ .++++++++++|||
T Consensus 82 ~~l~~~---~~~l~~~gd~v~~~~p~y~~~~~~~~~~g~~~~~~~~-~~~-~~~d~~~l~~~~---~~~~~~v~l~~p~N 153 (346)
T TIGR01141 82 EIIELL---IRAFLEPGDAVLVPPPTYSMYEISAKIHGAEVVKVPL-DED-GQLDLEDILVAI---DDKPKLVFLCSPNN 153 (346)
T ss_pred HHHHHH---HHHhcCCCCEEEEcCCCHHHHHHHHHHcCCeEEEecc-CCC-CCCCHHHHHHhc---CCCCCEEEEeCCCC
Confidence 999875 3445567999999999999999999999999999998 443 568999998865 56788999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEc
Q psy14428 322 PTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLT 401 (583)
Q Consensus 322 PTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~ 401 (583)
|||.+++.++++++++.|+ +++++|+||+|.++..++ ...+ .....+++|+++||||.+|++|+|+||+++
T Consensus 154 ptG~~~~~~~~~~l~~~~~-~~~~ii~D~~y~~~~~~~---~~~~---~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~-- 224 (346)
T TIGR01141 154 PTGNLLSRSDIEAVLERTP-EDALVVVDEAYGEFSGEP---STLP---LLAEYPNLIVLRTLSKAFGLAGLRIGYAIA-- 224 (346)
T ss_pred CCCCCCCHHHHHHHHHhCC-CCcEEEEECchhhhcCCc---cHHH---HHhhCCCEEEEehhhHhhhchhhhceeeec--
Confidence 9999999999999999987 799999999999887542 1111 123346899999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHhcCC
Q psy14428 402 PTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEILSD 481 (583)
Q Consensus 402 p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~l~~ 481 (583)
+ ++++++++.... ..+.+.++|.++..++++..
T Consensus 225 ~-----~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~---------------------------------------- 257 (346)
T TIGR01141 225 N-----AEIIDALNKVRA--PFNLSRLAQAAAIAALRDDD---------------------------------------- 257 (346)
T ss_pred C-----HHHHHHHHhccC--CCCCCHHHHHHHHHHhCCHH----------------------------------------
Confidence 6 578888876543 35678888988888876521
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCCh
Q psy14428 482 PKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSA 536 (583)
Q Consensus 482 ~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~ 536 (583)
+++++++++.++|+.+.+.|++. || +. ..+.+|.|.|..++.
T Consensus 258 ---------~~~~~~~~~~~~~~~l~~~L~~~--~g-~~-~~~~~g~~~~~~~~~ 299 (346)
T TIGR01141 258 ---------FIEKTVEEINAERERLYDGLKKL--PG-LE-VYPSDANFVLIRFPR 299 (346)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHhc--CC-CE-ECCCcCCEEEEecCC
Confidence 13344555667777888888765 33 44 335567888877753
|
Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme. |
| >PRK08354 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-32 Score=281.28 Aligned_cols=253 Identities=14% Similarity=0.085 Sum_probs=184.9
Q ss_pred CCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchh
Q psy14428 163 PKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSG 242 (583)
Q Consensus 163 ~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~ 242 (583)
.+.++|+.++.. .+++.+.+++.+.... ...|+. ...||+++++++. ++|++ |+|+++
T Consensus 8 ~~~i~l~~~~np------~~p~~~~~a~~~~~~~--~~~yp~---~~~l~~~ia~~~~---------~~I~v--t~G~~~ 65 (311)
T PRK08354 8 EGLIDFSASVNP------YPPEWLDEMFERAKEI--SGRYTY---YEWLEEEFSKLFG---------EPIVI--TAGITE 65 (311)
T ss_pred cceeEecCCCCC------CCCHHHHHHHHHHHHH--hhcCCC---hHHHHHHHHHHHC---------CCEEE--CCCHHH
Confidence 457899988642 2346777777665543 345753 4779999999885 47999 999999
Q ss_pred HHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCC
Q psy14428 243 SLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNP 322 (583)
Q Consensus 243 al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NP 322 (583)
++.++ +..+. +||+|++++|+|+.|...++..|++++.++. |++.+++.++ ++++++++|||||
T Consensus 66 al~~~---~~~~~-~gd~vlv~~P~y~~~~~~~~~~g~~~~~~~~--------d~~~l~~~~~----~~~~vi~~~P~NP 129 (311)
T PRK08354 66 ALYLI---GILAL-RDRKVIIPRHTYGEYERVARFFAARIIKGPN--------DPEKLEELVE----RNSVVFFCNPNNP 129 (311)
T ss_pred HHHHH---HHhhC-CCCeEEEeCCCcHHHHHHHHHcCCEEeecCC--------CHHHHHHhhc----CCCEEEEecCCCC
Confidence 99975 33344 5999999999999999999999999976543 6777776652 4567888999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcC
Q psy14428 323 TGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTP 402 (583)
Q Consensus 323 TG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p 402 (583)
||.+++.+++++|+++|++++++||+||+|.+|.+++. .. ..+++|+++||||+|++||+|+||+++ .
T Consensus 130 TG~~~~~~~l~~l~~~a~~~~~~li~De~y~~f~~~~~---~~-------~~~~vi~~~S~SK~~~l~GlRiG~~v~--~ 197 (311)
T PRK08354 130 DGKFYNFKELKPLLDAVEDRNALLILDEAFIDFVKKPE---SP-------EGENIIKLRTFTKSYGLPGIRVGYVKG--F 197 (311)
T ss_pred CCCccCHHHHHHHHHHhhhcCcEEEEeCcchhcccccc---cc-------CCCcEEEEeccHhhcCCccceeeeeee--h
Confidence 99999999999999999999999999999999998741 11 157899999999999999999999998 3
Q ss_pred CchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHh
Q psy14428 403 TSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEI 478 (583)
Q Consensus 403 ~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~ 478 (583)
++.+++... ....+.+.|.++..++++ .++...+..+...+.++.+ ...... ++.|+|+|+.+
T Consensus 198 --------~~~l~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l-~~~l~~-~~~~~~~~~~~ 260 (311)
T PRK08354 198 --------EEAFRSVRM--PWSIGSTGYAFLEFLIED-DFEHLRKTMPLIWREKERF-EKALYV-KSDANFFIKDV 260 (311)
T ss_pred --------HHHHHHcCC--CccCCHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHH-HHhcCC-CCCCcEEEEEC
Confidence 334444332 335566778888777774 3333222233333333333 222223 44566666543
|
|
| >PRK06959 putative threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-32 Score=281.13 Aligned_cols=222 Identities=15% Similarity=0.124 Sum_probs=171.3
Q ss_pred CCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchh
Q psy14428 163 PKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSG 242 (583)
Q Consensus 163 ~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~ 242 (583)
.+.++|+.++.. .++|. +.+.. .. ...|++.. .+||+++|++++- .++++|++ |+|+++
T Consensus 24 ~~~i~ls~Nenp--~~~~~--~~~~~---~~-----~~~Yp~~~--~~L~~~ia~~~~~-----~~~~~I~i--~~Gs~e 82 (339)
T PRK06959 24 DAWLDLSTGINP--HGYPV--PPVPA---DA-----WRRLPEDD--DGLAACAARYYGA-----PDAAHVLP--VAGSQA 82 (339)
T ss_pred hhhceeccCCCC--CCCCC--CCCCH---HH-----HHhCCCch--HHHHHHHHHHhCC-----CCcccEEE--CcCHHH
Confidence 356888888853 33331 11111 11 23476543 8999999999863 24689999 999999
Q ss_pred HHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCC
Q psy14428 243 SLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNP 322 (583)
Q Consensus 243 al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NP 322 (583)
++.++ .. +.++|| |++++|+|+.|...++..|++++.+++ +. +.+ ....+++++||||||
T Consensus 83 ~i~~l---~~-~~~~g~-v~v~~P~y~~y~~~~~~~g~~~~~v~~-~~-------~~~-------~~~~~~v~l~nPnNP 142 (339)
T PRK06959 83 AIRAL---PA-LLPRGR-VGIAPLAYSEYAPAFARHGHRVVPLDE-AA-------DTL-------PAALTHLIVVNPNNP 142 (339)
T ss_pred HHHHH---HH-hcCCCe-EEEcCCCcHHHHHHHHHCCCEEEeecc-cc-------hhc-------cccCCEEEEeCCCCC
Confidence 99864 33 345576 899999999999999999999999887 32 111 123457889999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcC
Q psy14428 323 TGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTP 402 (583)
Q Consensus 323 TG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p 402 (583)
||.+++.+++++|++.|++++.+||+||+|.+|.+. +++..+. ..+++|+++||||.||+||+|+||+++ |
T Consensus 143 TG~~~s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~------~s~~~~~-~~~~vi~l~SfSK~~gl~GlRiGy~v~--~ 213 (339)
T PRK06959 143 TAERLPAARLLRWHAQLAARGGTLIVDEAFADTLPA------ASLAAHT-DRPGLVVLRSVGKFFGLAGVRAGFVLA--A 213 (339)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEECCCccCCCc------ccchhcc-CCCCEEEEecChhhcCCcchheEEEec--C
Confidence 999999999999999999999999999999998743 1333333 347899999999999999999999999 7
Q ss_pred CchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChh
Q psy14428 403 TSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPK 441 (583)
Q Consensus 403 ~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~ 441 (583)
+++++++.+... ..++|.++|.++..+++++.
T Consensus 214 -----~~li~~l~~~~~--~~~vs~~~q~a~~~~L~~~~ 245 (339)
T PRK06959 214 -----PALLAALRDALG--AWTVSGPARHAVRAAFADAA 245 (339)
T ss_pred -----HHHHHHHHHhcC--CCCCcHHHHHHHHHHhCcHH
Confidence 589999998754 34578999999999998743
|
|
| >PRK00950 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=281.53 Aligned_cols=272 Identities=18% Similarity=0.223 Sum_probs=203.8
Q ss_pred CCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchh
Q psy14428 163 PKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSG 242 (583)
Q Consensus 163 ~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~ 242 (583)
.+.++|+.+++.. + +++.+.+++.+.... ...|+++.+ ++||+++|++++ +++++|++ .|+|+++
T Consensus 34 ~~~i~l~~~~~~~--~---~~~~~~~~~~~~~~~--~~~y~~~~~-~~lr~~ia~~~~------~~~~~i~~-~~~Ga~~ 98 (361)
T PRK00950 34 ESIIKLGSNENPL--G---PSPKAVEAIEKELSK--IHRYPEPDA-PELREALSKYTG------VPVENIIV-GGDGMDE 98 (361)
T ss_pred cceEEccCCCCCC--C---CCHHHHHHHHHHHHh--hcCCCCCCH-HHHHHHHHHHhC------CCHHHEEE-eCCCHHH
Confidence 3779999988642 2 446677776655543 456876655 999999999984 56788877 1378888
Q ss_pred HHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCC
Q psy14428 243 SLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNP 322 (583)
Q Consensus 243 al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NP 322 (583)
++.++ +..++++||.|++++|+|+.+...++..|++++.++. +. ++++|++.+++.+ .++++++++++||||
T Consensus 99 ~i~~~---~~~~~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~~~~-~~-~~~~~~~~l~~~~---~~~~~~v~~~~p~np 170 (361)
T PRK00950 99 VIDTL---MRTFIDPGDEVIIPTPTFSYYEISAKAHGAKPVYAKR-EE-DFSLDVDSVLNAI---TEKTKVIFLCTPNNP 170 (361)
T ss_pred HHHHH---HHHhcCCCCEEEEcCCChHHHHHHHHHcCCEEEEeec-CC-CCCcCHHHHHHHh---ccCCCEEEEeCCCCC
Confidence 88874 4455677999999999999999999999999999986 43 4689999998877 456788888999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcC
Q psy14428 323 TGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTP 402 (583)
Q Consensus 323 TG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p 402 (583)
||.+++.+++.+|+ ++++++||+||+|.+|. +. +..+ +.+..+++++++||||++|+||+|+||+++ |
T Consensus 171 tG~~~~~~~l~~l~---~~~~~~li~De~y~~~~-~~---~~~~---~~~~~~~vi~~~S~SK~~g~~GlRiG~~~~--~ 238 (361)
T PRK00950 171 TGNLIPEEDIRKIL---ESTDALVFVDEAYVEFA-EY---DYTP---LALEYDNLIIGRTFSKVFGLAGLRIGYGFV--P 238 (361)
T ss_pred CCCCcCHHHHHHHH---HHCCcEEEEECchhhhC-cc---chHH---HHHhcCCEEEEEeehHhhcCchhhcchhcC--C
Confidence 99999999887664 56799999999999886 21 2222 234457899999999999999999999999 7
Q ss_pred CchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChh-hhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHh
Q psy14428 403 TSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPK-LKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEI 478 (583)
Q Consensus 403 ~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~ 478 (583)
+++++.+.+.... .+.+.+.|.++..++++.. ++++.+..+.....+.+.++ +...|++|+|+|+.+
T Consensus 239 -----~~~~~~~~~~~~~--~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~l~--~~~~~~~~~~i~~~~ 306 (361)
T PRK00950 239 -----EWLIDYYMRAKTP--FSLTRLSQAAAIAALSDKEYIEKSIEHGIKSREYLYNELP--FKVYPSEANFVLVDV 306 (361)
T ss_pred -----HHHHHHHHHhcCC--CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhcC--eeECCCcceEEEEEC
Confidence 5788888876543 4578899999999988643 44433333322222222222 344577888999877
|
|
| >TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-31 Score=273.83 Aligned_cols=280 Identities=16% Similarity=0.183 Sum_probs=209.7
Q ss_pred hhHhhccccccCCCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCC
Q psy14428 149 PLKQQLKGFNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFK 228 (583)
Q Consensus 149 ~i~~l~~~~~~~~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~ 228 (583)
++.++...+. .+.++.++|+.|.+. .+ ++..... . ....+|+++.| ++||++++++++ ++
T Consensus 4 ~~~~~~~~~~-~~~~~~~~~~~~~~~--~~----~~~~~~~-~-----~~~~~y~~~~~-~~lr~~la~~~~------~~ 63 (330)
T TIGR01140 4 NLRRAAARYG-IPPEDWLDFSTGINP--LG----PPVPPIP-A-----SAWARYPDPEY-DELRAAAAAYYG------LP 63 (330)
T ss_pred cHHHHHHHcC-CChhheeEccccCCC--CC----CChhhcc-h-----HHHhhCCCccH-HHHHHHHHHHhC------CC
Confidence 3444444432 246678999999853 12 1211111 1 12466887776 999999999984 56
Q ss_pred CCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCC
Q psy14428 229 DNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMP 308 (583)
Q Consensus 229 ~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~ 308 (583)
+++|++ |+|+++++.++. ..+ .+| .|++++|+|..+...++..|++++.++ |++.+++.+
T Consensus 64 ~~~i~~--t~G~~~~i~~~~---~~l-~~g-~vl~~~p~y~~~~~~~~~~g~~~~~~~---------d~~~l~~~~---- 123 (330)
T TIGR01140 64 AASVLP--VNGAQEAIYLLP---RLL-APG-RVLVLAPTYSEYARAWRAAGHEVVELP---------DLDRLPAAL---- 123 (330)
T ss_pred hhhEEE--CCCHHHHHHHHH---HHh-CCC-eEEEeCCCcHHHHHHHHHcCCEEEEeC---------CHHHHHhhc----
Confidence 899999 999999999853 333 447 699999999999999999999988775 566776665
Q ss_pred CCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCccccc
Q psy14428 309 ERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMG 388 (583)
Q Consensus 309 ~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~ 388 (583)
++++++++++||||||.+++.+++++|+++|+++|++||+||+|.++.+.. ++..+.+..+++|+++||||+||
T Consensus 124 ~~~~~v~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~------~~~~~~~~~~~~i~~~S~SK~~g 197 (330)
T TIGR01140 124 EELDVLVLCNPNNPTGRLIPPETLLALAARLRARGGWLVVDEAFIDFTPDA------SLAPQAARFPGLVVLRSLTKFFG 197 (330)
T ss_pred ccCCEEEEeCCCCCCCCCCCHHHHHHHHHHhHhcCCEEEEECcccccCCcc------chhhHhccCCCEEEEEecchhhc
Confidence 235688889999999999999999999999999999999999999998642 23333334578999999999999
Q ss_pred ccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCc
Q psy14428 389 LYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPP 468 (583)
Q Consensus 389 l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p 468 (583)
+||+|+||+++ + +++++++..... ..+++.++|.++..+++++.
T Consensus 198 ~~G~R~G~i~~--~-----~~~~~~l~~~~~--~~~~s~~~q~~~~~~l~~~~--------------------------- 241 (330)
T TIGR01140 198 LAGLRLGFVVA--H-----PALLARLREALG--PWTVNGPARAAGRAALADTA--------------------------- 241 (330)
T ss_pred CchhhhhheeC--C-----HHHHHHHHhcCC--CCCchHHHHHHHHHHHhchH---------------------------
Confidence 99999999999 6 578888886543 34678889999988887532
Q ss_pred cchhhHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCCh
Q psy14428 469 IHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSA 536 (583)
Q Consensus 469 ~~g~~i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~ 536 (583)
| .+.+++++..+|+.+.+.|++.+ ... ..+.+|+|.|..++.
T Consensus 242 -------------------~---~~~~~~~~~~~~~~l~~~L~~~~---~~~-~~~~~~~f~~~~~~~ 283 (330)
T TIGR01140 242 -------------------W---QAATRARLAAERARLAALLARLG---GLE-VVGGTALFLLVRTPD 283 (330)
T ss_pred -------------------H---HHHHHHHHHHHHHHHHHHHHhCC---Cce-ECCCCCeEEEEEcCC
Confidence 2 12234566778888888888754 122 245678999987754
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella. |
| >COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-29 Score=250.01 Aligned_cols=143 Identities=29% Similarity=0.486 Sum_probs=130.8
Q ss_pred eEEecCCCCcCchhhhhhcCC-----CceeeeeccCCCCcc--------------------------------------c
Q psy14428 28 KTVYFPTPTWNGHVRFCTDSR-----LNVGAYRYFDNKTNG--------------------------------------L 64 (583)
Q Consensus 28 ~~~~~~~p~w~n~~~~~~~~~-----~~~~~y~~~~~~~~~--------------------------------------~ 64 (583)
-+-+++||+.+....+.+|.+ |.|+.|+.-+++|+. -
T Consensus 5 i~~~p~DpIlgL~e~f~~D~R~~KVNLgIGvY~de~Gk~pvl~aV~~Ae~~l~~~~~~k~Yl~i~G~~~f~~~~~~llFG 84 (396)
T COG1448 5 IEAAPADPILGLKEAFKADPRPNKVNLGIGVYKDEDGKTPVLRAVKKAEKRLLEQEKTKNYLPIEGLPEFLEAVQKLLFG 84 (396)
T ss_pred cccCCCCchhHHHHHHhcCCCcCeeeeeeeeeeCCCCCcchhHHHHHHHHHhhccccccccCCcCCcHHHHHHHHHHhcC
Confidence 346899999999999999987 899999999999998 1
Q ss_pred chhhhHHHHHhhhhhcccccchhhhHHHHHHHhCCCCcEEEeCCCCCCChHhHhhhcCCcccccccccCCCCCccccCcc
Q psy14428 65 DFAGMMEDIKLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMM 144 (583)
Q Consensus 65 d~~~~~~~~~~a~~q~~~gtgal~~~~~~~~~~~~~~~~~~i~~ptw~nh~~if~~~g~~~~~y~Y~~~~~~~~d~~~m~ 144 (583)
+-..++...|.+++||+|||||||+||+|+++++|. .+||||+|||+||+.||+.+|+++.+|||||.+++++||++|+
T Consensus 85 ~d~~~l~~~Rv~t~Qt~GGTGAL~~~A~fl~~~~~~-~~vwis~PtW~NH~~If~~aGl~v~~Y~Yyd~~~~~~df~~ml 163 (396)
T COG1448 85 ADSPALAEDRVATVQTLGGTGALRVAADFLARFFPD-ATVWISDPTWPNHKAIFEAAGLEVETYPYYDAETKGLDFDGML 163 (396)
T ss_pred CCcHHHHhhhHhheecCCcchHHHHHHHHHHHhCCC-ceEEeCCCCcHhHHHHHHhcCCceeeeeccccccccccHHHHH
Confidence 122367889999999999999999999999999997 8999999999999999999999999999999999999999999
Q ss_pred c-----cchhhHhhccccccCCCCCccccCCcccc
Q psy14428 145 E-----DIKPLKQQLKGFNKDPHPKKMNLGVGAYR 174 (583)
Q Consensus 145 ~-----~~~~i~~l~~~~~~~~~~~~i~l~~g~~~ 174 (583)
. +.++++.+|.| ||||+++|++..+|.
T Consensus 164 a~L~~a~~~~vvLLH~C---cHNPTG~D~t~~qW~ 195 (396)
T COG1448 164 ADLKTAPEGSVVLLHGC---CHNPTGIDPTEEQWQ 195 (396)
T ss_pred HHHHhCCCCCEEEEecC---CCCCCCCCCCHHHHH
Confidence 8 47789999999 999999999988873
|
|
| >COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-27 Score=226.26 Aligned_cols=353 Identities=16% Similarity=0.160 Sum_probs=239.4
Q ss_pred hhhHhhcccccc-CCCCCccccCCccccCCCCCCCCChHHHHHHHHHhccC----CCCCCCCCCCCHHHHHHHHHHHhCC
Q psy14428 148 KPLKQQLKGFNK-DPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKN----LDHEYANIGGDAKFCKLAAQLAYGE 222 (583)
Q Consensus 148 ~~i~~l~~~~~~-~~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~----~~~~Y~~~~G~~~Lr~aia~~~~~~ 222 (583)
+.+.+++..... -..++.|.|+.|.|..- |...+.+.+...+++.+. ..-+|..++|...|.++++..++++
T Consensus 14 sGi~~lMdDl~d~Lrt~g~imLggGNPa~i---Pem~~~f~~~~aemla~~~~~e~~cnY~~pQG~~~li~ala~~l~~~ 90 (417)
T COG3977 14 SGITQLMDDLNDGLRTPGAIMLGGGNPARI---PEMDDYFQDLLAEMLASGKATEALCNYDGPQGKAVLIDALAKMLRRE 90 (417)
T ss_pred hhHHHHHHHHHhhccCCCceeeCCCCcccC---hhHHHHHHHHHHHHHhcchHHHHHhcCCCCcchhHHHHHHHHHHHHH
Confidence 345555554331 24667899999998522 222234444444444432 2468999999999999999999999
Q ss_pred CCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCC--EEEEc-CCCChhhHHHHhhcCCeEEE----EecccCC---C
Q psy14428 223 DFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVK--TVYFP-TPTWNGHVRFCTDSRLNVGA----YRYFDNK---T 292 (583)
Q Consensus 223 ~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd--~Vlv~-~P~y~~~~~~~~~~G~~~~~----v~~~d~~---~ 292 (583)
+|++++++||.+ |+|++.+...++.++......|+ .|++| .|.|..|..+--.-.+ .|. +.+ ++. .
T Consensus 91 ygwnit~~NIal--TnGSQs~fFYlfNlF~G~~sdG~~k~illPLaPeYiGY~d~~l~~d~-fVs~kP~iel-~~~g~FK 166 (417)
T COG3977 91 YGWNITAQNIAL--TNGSQSAFFYLFNLFAGRRSDGTEKKILLPLAPEYIGYADAGLEEDL-FVSAKPNIEL-LPAGQFK 166 (417)
T ss_pred hCCCCccceeee--cCCccchHHHHHHHhcCccCCCcceeEeeccChhhccccccccCccc-eeeccCCccc-cccccee
Confidence 999999999999 99999999987766655444453 56655 7889888654322111 111 111 111 1
Q ss_pred CCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHH
Q psy14428 293 NGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAK 372 (583)
Q Consensus 293 ~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~ 372 (583)
+.+|++.+.- .+.+.+++++.|.||||.+++.+|+.+|..+|++||+++|+|.+|+.=..+=...+..+ -
T Consensus 167 Y~vDF~~l~i-----~e~~g~ic~SRPtNPTGNVlTdeE~~kldalA~~~giPliIDnAYg~PFP~iifsd~~~-----~ 236 (417)
T COG3977 167 YHVDFEHLHI-----GESTGAICVSRPTNPTGNVLTDEELAKLDALARQHGIPLIIDNAYGVPFPGIIFSDATP-----L 236 (417)
T ss_pred eccCHHHccc-----ccccceEEecCCCCCCCCcccHHHHHHHHHHhhhcCCcEEEecccCCCCCceecccccc-----c
Confidence 3456666532 57788999999999999999999999999999999999999999964221100001111 1
Q ss_pred hcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHH
Q psy14428 373 EVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERI 452 (583)
Q Consensus 373 ~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~ 452 (583)
-.+|+|.+-|+|| .|+||.|+|.+++ . +++++++...+......++..++.+++++++.+.+.+.-+++
T Consensus 237 w~~NiilC~SLSK-~GLPG~R~GIiIa--n-----e~viqaitnmn~iisLap~~~G~Aia~~mie~gdl~rlseqV--- 305 (417)
T COG3977 237 WNENIILCMSLSK-LGLPGSRCGIIIA--N-----EKVIQAITNMNGIISLAPGRMGPAIAAEMIESGDLLRLSEQV--- 305 (417)
T ss_pred CCCCEEEEeehhh-cCCCCcceeEEEc--c-----HHHHHHHHhccceeeecCCCccHHHHHHHhhcchHHHHHHHh---
Confidence 2579999999999 7899999999999 5 799999999999889999999999999999987654432211
Q ss_pred HHHHHHHHhhccCCCccchhhHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeec
Q psy14428 453 MSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYT 532 (583)
Q Consensus 453 ~~~l~~~~r~~~~~~p~~g~~i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~ 532 (583)
+ |--|+++-+...+.|++....-.|...+|+|..|+|.
T Consensus 306 -------I-----------------------------------rPFY~~~~q~~~~~l~~~lp~~~~~iHkpEGAIFlWL 343 (417)
T COG3977 306 -------I-----------------------------------RPFYRNRVQTTIAILRRYLPEYRCLIHKPEGAIFLWL 343 (417)
T ss_pred -------h-----------------------------------hHHHHHHHHHHHHHHHHhcCccceeeecCCcceeehh
Confidence 1 1122333333344444432222366788999999997
Q ss_pred CCChhhhhhhhhhhhHHHHHHHHhhcC------------CCccccccccCCcceeecC
Q psy14428 533 GLSASQGMSNRISSIREELKSKILDKG------------SKKNWDHITNQKGMFCYTG 578 (583)
Q Consensus 533 ~l~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~ 578 (583)
.+.+--+. -+++++.||+.| -...|.|.-.+. +++|+.
T Consensus 344 Wf~dLPIt-------t~~LYq~LKa~Gvl~VPG~~FFpGl~~ewpH~hqC~-Rmn~~~ 393 (417)
T COG3977 344 WFKDLPIT-------TEELYQRLKARGVLMVPGHYFFPGLDKEWPHTHQCM-RMNYVP 393 (417)
T ss_pred hhccCCCC-------HHHHHHHHHhCeEEEecccccCCCCCCCCCCccceE-EEecCC
Confidence 54332221 244555555554 445788855554 677754
|
|
| >cd00609 AAT_like Aspartate aminotransferase family | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-25 Score=231.74 Aligned_cols=296 Identities=21% Similarity=0.239 Sum_probs=224.3
Q ss_pred cccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHH
Q psy14428 166 MNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLR 245 (583)
Q Consensus 166 i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~ 245 (583)
+||+.|.++.. +.+.+.++..+.........|.+..|..++++++++++...++....++++++ ++|+++++.
T Consensus 1 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~--~~~~t~a~~ 73 (350)
T cd00609 1 IDLSIGEPDFP-----PPPEVLEALAAAALRAGLLGYYPDPGLPELREAIAEWLGRRGGVDVPPEEIVV--TNGAQEALS 73 (350)
T ss_pred CCCCCCCCCCC-----CCHHHHHHHHHHhhccCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcceEEE--ecCcHHHHH
Confidence 46777777532 33444444443222233677999999999999999999988777677889999 999999998
Q ss_pred HHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCCh--hhHHHHHHcCCCCcEEEEeCCCCCCC
Q psy14428 246 VGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDF--AGMMEDIKAMPERSILFLQTSSHNPT 323 (583)
Q Consensus 246 l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~--~~l~~~l~~~~~~~~~i~i~~p~NPT 323 (583)
.+ +..+..+||+|++++|+|..+...++..|.+++.++. +++ ...+. +.++... .++++++++++|+|||
T Consensus 74 ~~---~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~~~i~~-~~~-~~~~~~~~~~~~~~---~~~~~~v~i~~~~~~t 145 (350)
T cd00609 74 LL---LRALLNPGDEVLVPDPTYPGYEAAARLAGAEVVPVPL-DEE-GGFLLDLELLEAAK---TPKTKLLYLNNPNNPT 145 (350)
T ss_pred HH---HHHhCCCCCEEEEcCCCchhHHHHHHHCCCEEEEEec-ccc-cCCccCHHHHHhhc---CccceEEEEECCCCCC
Confidence 85 4455667999999999999999999999999999998 433 33443 3333322 5678888888899999
Q ss_pred CCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCC
Q psy14428 324 GVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPT 403 (583)
Q Consensus 324 G~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~ 403 (583)
|.+++.+++++|+++|+++|+++|+|++|..+.+.+. ....+. ..+..+.+++++|+||.++++|+|+||+++ ++
T Consensus 146 G~~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~--~~~~~~-~~~~~~~~~~~~s~~K~~~~~g~~~G~i~~--~~ 220 (350)
T cd00609 146 GAVLSEEELEELAELAKKHGILIISDEAYAELVYDGE--PPPALA-LLDAYERVIVLRSFSKTFGLPGLRIGYLIA--PP 220 (350)
T ss_pred CcccCHHHHHHHHHHHHhCCeEEEEecchhhceeCCc--cccccc-CcCccCcEEEEeecccccCCcccceEEEec--CH
Confidence 9999999999999999999999999999999887652 111111 124456899999999999999999999999 62
Q ss_pred chhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHhcCChh
Q psy14428 404 SDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPK 483 (583)
Q Consensus 404 ~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~l~~~~ 483 (583)
+++++.+.........+++...|.++..+++...
T Consensus 221 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------------------------------------------ 254 (350)
T cd00609 221 ----EELLERLKKLLPYTTSGPSTLSQAAAAAALDDGE------------------------------------------ 254 (350)
T ss_pred ----HHHHHHHHHHHHhcccCCChHHHHHHHHHHhCcH------------------------------------------
Confidence 2688888887777677888888888777766421
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCCh
Q psy14428 484 LKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSA 536 (583)
Q Consensus 484 ~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~ 536 (583)
+..+++++++.++++.+.+.|++.+. +....+.+|++.|..++.
T Consensus 255 ------~~~~~~~~~~~~~~~~l~~~L~~~~~---~~~~~~~~g~~~~~~~~~ 298 (350)
T cd00609 255 ------EHLEELRERYRRRRDALLEALKELGP---LVVVKPSGGFFLWLDLPE 298 (350)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHhcCC---ccccCCCccEEEEEecCC
Confidence 12455566677888888888887642 111456788999987754
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi |
| >KOG0258|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-25 Score=221.49 Aligned_cols=307 Identities=18% Similarity=0.165 Sum_probs=228.0
Q ss_pred CChHHHHHHHHHhcc--CCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCC
Q psy14428 182 VLPSVKEAERRIYEK--NLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVK 259 (583)
Q Consensus 182 ~~~~v~~a~~~~~~~--~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd 259 (583)
+.+.+++| .+++.. +....|+.++|++-.|+.+|+|+.++.|++.+|++|.+ |.|++.|+..+..++ +..+.+
T Consensus 88 p~Dai~RA-~~~L~~~gGs~GaYS~SqGv~~vR~~VA~~I~rRDG~p~~p~dI~L--T~GAS~ai~~il~l~--~~~~~~ 162 (475)
T KOG0258|consen 88 PTDAIKRA-KRILNDCGGSLGAYSDSQGVPGVRKHVAEFIERRDGIPADPEDIFL--TTGASPAIRSILSLL--IAGKKT 162 (475)
T ss_pred CHHHHHHH-HHHHHhcCCcccccccccCChhHHHHHHHHHHhccCCCCCHHHeee--cCCCcHHHHHHHHHH--hcCCCC
Confidence 33455554 444433 34667999999999999999999999999999999999 999999999864332 334578
Q ss_pred EEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcC--CCCcEEEEeCCCCCCCCCCCCHHHHHHHHH
Q psy14428 260 TVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAM--PERSILFLQTSSHNPTGVDLSEDQWRQLAV 337 (583)
Q Consensus 260 ~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~--~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~ 337 (583)
.|++|-|.|+-|...+..+|...+++-+.++.+|++|.+++++.++++ .-+.+++++-||.||||.++|++.+++|+.
T Consensus 163 GvliPiPQYPLYsAti~l~~~~~v~YyLdEe~~W~ld~~el~~~~~eA~k~i~~r~lvvINPGNPTGqvls~e~ie~i~~ 242 (475)
T KOG0258|consen 163 GVLIPIPQYPLYSATISLLGGTQVPYYLDEESNWSLDVAELERSVDEARKGINPRALVVINPGNPTGQVLSEENIEGIIC 242 (475)
T ss_pred ceEeecCCCchhHHHHHHhCCcccceeeccccCCCCCHHHHHHHHHHHhccCCceEEEEECCCCccchhhcHHHHHHHHH
Confidence 999999999999999999999999998843447999999999988765 346788888999999999999999999999
Q ss_pred HHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHh-------cCcEEEEecCcccc-cccCccceEEEEEcCCchhHHH
Q psy14428 338 VVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKE-------VGQLCLAQSFSKNM-GLYGERVGTFSVLTPTSDETER 409 (583)
Q Consensus 338 ~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~-------~~~vi~i~S~SK~~-~l~GlRiG~lv~~~p~~~~~~~ 409 (583)
+|.+++++++.||+|++-.|.+. ....|++..+.. ...++.++|.||.+ |=.|-|-||+-...-+ ++
T Consensus 243 fa~~~~l~llaDEVYQ~Nvy~~~-skFhSfKKvl~emg~~~~~~v~L~SfhSvSKGy~gECG~RGGYmEv~n~~----pr 317 (475)
T KOG0258|consen 243 FAAEEGLVLLADEVYQDNVYTTG-SKFHSFKKVLHEMGNPYPDNVSLASFHSVSKGYMGECGQRGGYMESLNRD----PR 317 (475)
T ss_pred HHHHcCeEEechHHHHhhccCCC-cchHhHHHHHHHhcCccCCceEEEeeecccccceeeecccCCeeecccCC----hh
Confidence 99999999999999999999752 345566554322 12367888999988 5589999999873332 23
Q ss_pred HHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHhcCChhHHHHHH
Q psy14428 410 IMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQWF 489 (583)
Q Consensus 410 li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~l~~~~~~~~~~ 489 (583)
+.+.+.+... ...+++..+|..+-. ..+||.-|. ..++.|.
T Consensus 318 v~~qi~Kl~s-i~lc~~V~GQ~~vdl----------------------------~VnPP~Pgd----------~Sy~~~~ 358 (475)
T KOG0258|consen 318 VKQQIKKLAS-IKLCPQVSGQKLVDL----------------------------VVNPPKPGD----------PSYDLFS 358 (475)
T ss_pred HHHHHHHHHh-hhhcCCccchhhhce----------------------------ecCCCCCCC----------cchhhhh
Confidence 4444443211 111222222222111 112232221 2456777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCC--Chhhhh
Q psy14428 490 EECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGL--SASQGM 540 (583)
Q Consensus 490 ~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l--~~~~~~ 540 (583)
++-+.+.+.++.+.+++.++++.+. +..+..+||.||+|+.+ +...++
T Consensus 359 ~Ekd~il~~l~~ra~l~~~~~ns~~---gi~cn~~qGAMY~fP~i~lP~kaie 408 (475)
T KOG0258|consen 359 SEKDGILSSLRSRAKLTEDAFNSLE---GISCNPVQGAMYLFPQISLPPKAIE 408 (475)
T ss_pred hhhHhHHHHHHHHhHHHHHHHhhcC---ceeeccCccceeecccccCCHHHHH
Confidence 7788888888999999999998864 36789999999999754 444443
|
|
| >PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.7e-26 Score=242.48 Aligned_cols=295 Identities=10% Similarity=-0.004 Sum_probs=212.7
Q ss_pred CCCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCC
Q psy14428 160 DPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGIS 239 (583)
Q Consensus 160 ~~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G 239 (583)
+.+.+.++|+.|+++.++.+|.....+.++..+.+..+ ..+|++..|.++||++++++++. ++|++ |+|
T Consensus 33 ~~g~~~~~L~~g~p~~D~~tds~t~a~~~a~~~a~~~g-~~~Y~~~~g~~~Lreaia~~~~~--------~~vv~--t~g 101 (460)
T PRK13238 33 EAGYNPFLLKSEDVFIDLLTDSGTGAMSDRQWAAMMRG-DEAYAGSRSYYRLEDAVKDIFGY--------PYTIP--THQ 101 (460)
T ss_pred HcCCCEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHhC-CcccCCCCCHHHHHHHHHHHhCC--------CcEEE--CCC
Confidence 45778999999999544443332235677666666443 46799999999999999999964 46888 999
Q ss_pred chhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccC-------CCC--CCChhhHHHHHHcCC-C
Q psy14428 240 GSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDN-------KTN--GLDFAGMMEDIKAMP-E 309 (583)
Q Consensus 240 ~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~-------~~~--g~d~~~l~~~l~~~~-~ 309 (583)
+++|+.++ +..+++||| |++++|.|..|...++..|++++.+++ ++ +.+ .+|++.+++.+.... +
T Consensus 102 gt~A~~~~---~~all~pGD-Vii~~p~~~~~~~~i~~~G~~~v~v~~-~~~~~~~~~~~f~g~id~e~Le~~i~~~~~~ 176 (460)
T PRK13238 102 GRAAEQIL---FPVLIKKGD-VVPSNYHFDTTRAHIELNGATAVDLVI-DEALDTGSRHPFKGNFDLEKLEALIEEVGAE 176 (460)
T ss_pred HHHHHHHH---HHHhCCCCC-EEccCCcccchHHHHHHcCCEEEEEec-cccccccccccccCCcCHHHHHHHHhhcCCC
Confidence 99999985 445677799 999999999999999999999999998 43 123 399999999985432 4
Q ss_pred CcEEEEeCCCCCCCC-CCCCHHHHHHHHHHHHhcCeEEEEeccC--CCCCCCCC---CCchHHHHHHHHhcCcEEEEecC
Q psy14428 310 RSILFLQTSSHNPTG-VDLSEDQWRQLAVVVKQRHLYPFFDMAY--LGLTSGDF---DKDAFSLRYFAKEVGQLCLAQSF 383 (583)
Q Consensus 310 ~~~~i~i~~p~NPTG-~~~s~~~~~~l~~~a~~~~i~iI~De~Y--~~l~~~~~---~~~~~~~~~~~~~~~~vi~i~S~ 383 (583)
+++++++++|||||| .+++.+++++|.++|++||++||+|+++ ....|... .....++..+ ++.++|+
T Consensus 177 ~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a~f~~~~e~g~~~~si~~i------~~~~~s~ 250 (460)
T PRK13238 177 NVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAENAYFIKQREPGYKDKSIKEI------AREMFSY 250 (460)
T ss_pred ceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhhhhhhhhhccccccCCCHHHH------hhhhccc
Confidence 799999999999998 9999999999999999999999999965 22333210 0012233332 3456899
Q ss_pred cccccccCccc-----eEEEEEcCCchhHHHHHHHHHHHH----hccccCC-ChHHHHHHHHHhCChhhhhhhhhHHHHH
Q psy14428 384 SKNMGLYGERV-----GTFSVLTPTSDETERIMSQLKILI----RGFYSNP-PIHGARIVTEILSDPKLKAQCDETERIM 453 (583)
Q Consensus 384 SK~~~l~GlRi-----G~lv~~~p~~~~~~~li~~l~~~~----~~~~~~~-s~~~q~~~~~~l~~~~~~~~~~~~~~~~ 453 (583)
+|.+.++|+|+ |++++. ++ ++++++++... ....++. +...|.+++..+.+..
T Consensus 251 ~D~~~~Sg~K~g~~~~GG~i~~-~d----~~l~~~~~~~~~~~~g~~t~~g~~~~~~~Ala~~l~e~~------------ 313 (460)
T PRK13238 251 ADGLTMSAKKDAMVNIGGLLCF-RD----EDLFTECRTLCILYEGFPTYGGLAGRDMEALAVGLYEGM------------ 313 (460)
T ss_pred CcEEEEecccCCCCcceeEEEc-Ch----HHHHHHhhhcccccCCcccccCcHHHHHHHHHhhHHHhh------------
Confidence 99999999997 444441 43 47888887763 3323333 5555777776554300
Q ss_pred HHHHHHHhhccCCCccchhhHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecC
Q psy14428 454 SQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTG 533 (583)
Q Consensus 454 ~~l~~~~r~~~~~~p~~g~~i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~ 533 (583)
...+ +..+ .++|+.|.+.|++.+ +.+..|++|+|+|++
T Consensus 314 -------------------------------~~~~---~~~~----~~~~~~l~~~L~~~G----~~~~~p~Gg~~v~~d 351 (460)
T PRK13238 314 -------------------------------DEDY---LAYR----IGQVEYLGEGLEEAG----VPIQTPAGGHAVFVD 351 (460)
T ss_pred -------------------------------ChHH---HHHH----HHHHHHHHHHHHHCC----CCeEccCCceEEEEE
Confidence 0011 1111 235788889998866 557889999999987
Q ss_pred CC
Q psy14428 534 LS 535 (583)
Q Consensus 534 l~ 535 (583)
+.
T Consensus 352 ~~ 353 (460)
T PRK13238 352 AG 353 (460)
T ss_pred ch
Confidence 64
|
|
| >KOG0633|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-24 Score=203.47 Aligned_cols=242 Identities=19% Similarity=0.206 Sum_probs=189.6
Q ss_pred CHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCC-CEEEEcCCCChhhHHHHhhcCCeEEEEe
Q psy14428 208 DAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGV-KTVYFPTPTWNGHVRFCTDSRLNVGAYR 286 (583)
Q Consensus 208 ~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~g-d~Vlv~~P~y~~~~~~~~~~G~~~~~v~ 286 (583)
..+|+.++++- -++++|+|++ ..|+-+.+++ +++..|.|| ++|++-.|+|..|.--+...+++++.+|
T Consensus 71 nk~ls~a~~~d------kpLt~dnic~--GvGsDE~ID~---iiR~~c~PGkeKIl~cPPtysMY~v~A~iNd~eVvkvp 139 (375)
T KOG0633|consen 71 NKRLSDALAQD------KPLTSDNICV--GVGSDELIDL---IIRCVCDPGKEKILDCPPTYSMYVVDAAINDAEVVKVP 139 (375)
T ss_pred cchhhhhcccC------CCCCccceEE--ecCcHHHHHH---HHhheecCCccceeecCCcceeEEEEeecCCceEEEec
Confidence 35555555432 4688999999 9999988888 467788888 8999999999999888888999999999
Q ss_pred cccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHH
Q psy14428 287 YFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFS 366 (583)
Q Consensus 287 ~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~ 366 (583)
+ .+ ++.+|.+.+.+.++. ....+.+++++|+||||..++.+.+++|++.- -|.+||.||+|.+|.-.+ |
T Consensus 140 l-~p-dF~lnvdai~evl~~-ds~iK~~F~tSPgNPtg~~ik~~di~KiLe~p--~nglVVvDEAYidFsg~~------S 208 (375)
T KOG0633|consen 140 L-NP-DFSLNVDAIAEVLEL-DSKIKCIFLTSPGNPTGSIIKEDDILKILEMP--DNGLVVVDEAYIDFSGVE------S 208 (375)
T ss_pred C-CC-CccccHHHHHHHHhc-cccceEEEEcCCCCCCcccccHHHHHHHHhCC--CCcEEEEeeeeEeecccc------c
Confidence 9 44 599999999988864 45788999999999999999999999998743 278999999999998543 2
Q ss_pred HHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhh
Q psy14428 367 LRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQC 446 (583)
Q Consensus 367 ~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~ 446 (583)
-..+...++|++++.+|||+||++|+|+||-.. | ..+++.|...+. .++.|.++..++..++++...++.-
T Consensus 209 ~~~lV~kYpNLivlqTlSKsfGLAGiRvG~~~~--~-----~~ia~iln~~Ka--PYNiS~~~s~~AL~Als~~n~kkme 279 (375)
T KOG0633|consen 209 RMKLVKKYPNLIVLQTLSKSFGLAGIRVGYGAF--P-----LSIAEILNRAKA--PYNISVAGSVAALAALSDSNGKKME 279 (375)
T ss_pred cchHhHhCCceeehhhhhhhcCcceeEeecccc--c-----HHHHHHHHhccC--CccccchhHHHHHHhcCcccchHHH
Confidence 333456789999999999999999999999998 6 467777776654 3577888888888888865554444
Q ss_pred hhHHHHHHHHHHHHhhc-----cC--CCccchhhHHHHhcC
Q psy14428 447 DETERIMSQLKILIRGF-----YS--NPPIHGARIVTEILS 480 (583)
Q Consensus 447 ~~~~~~~~~l~~~~r~~-----~~--~~p~~g~~i~~~~l~ 480 (583)
.....+.+++.+++..+ +. .-++.++||++++..
T Consensus 280 ~~rdaiv~er~RL~keLt~v~~~~~~~gg~daNFiLi~v~~ 320 (375)
T KOG0633|consen 280 DVRDAIVRERERLFKELTEVPFLNDYPGGSDANFILIEVTG 320 (375)
T ss_pred HHHHHHHHHHHHHHHHhhcCccccCCCCcccccEEEEEEcC
Confidence 44444555555554322 22 456778999999874
|
|
| >cd00617 Tnase_like Tryptophanase family (Tnase) | Back alignment and domain information |
|---|
Probab=99.91 E-value=4e-23 Score=218.95 Aligned_cols=227 Identities=11% Similarity=0.039 Sum_probs=169.6
Q ss_pred CCCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCC
Q psy14428 160 DPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGIS 239 (583)
Q Consensus 160 ~~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G 239 (583)
+.+-+.+.|..+++--++.++--...+.++..+.+..+ ...|.+..|.++||++++++++. +++++ |+|
T Consensus 8 ~~g~n~~~l~~~~v~iDlltds~t~ams~~~~~a~~~g-d~~Y~~~~g~~~Leeaia~~~g~--------~~vv~--t~~ 76 (431)
T cd00617 8 EAGYNVFLLRSEDVYIDLLTDSGTGAMSDYQWAAMMLG-DEAYAGSKSFYDLEDAVQDLFGF--------KHIIP--THQ 76 (431)
T ss_pred HcCCCEEeCCCCCcCCCCCCCCCcHHHHHHHHHHHHhC-CCccCCCCCHHHHHHHHHHHHCC--------CeEEE--cCC
Confidence 35667788888888333332211234444444444333 35699999999999999999975 46788 999
Q ss_pred chhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCC---------CCCCChhhHHHHHHcC-CC
Q psy14428 240 GSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNK---------TNGLDFAGMMEDIKAM-PE 309 (583)
Q Consensus 240 ~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~---------~~g~d~~~l~~~l~~~-~~ 309 (583)
|++|+.++ +..+++|||.| +++|+|..+...+...|++++.+++ +++ .+.+|++.+++.+... .+
T Consensus 77 Gt~Al~la---~~al~~pGD~V-~~~~~f~~~~~~i~~~Ga~pv~v~i-~~~~~~~~~~pf~gniD~e~Le~~I~~~~~~ 151 (431)
T cd00617 77 GRGAENIL---FSILLKPGRTV-PSNMHFDTTRGHIEANGAVPVDLVI-DEAHDAQELIPFKGNIDVAKLEKLIDEVGAE 151 (431)
T ss_pred HHHHHHHH---HHHhCCCCCEE-ccCCcccchHHHHHhCCCEeEEEec-ccccccccccCCCCCcCHHHHHHHhCcccCC
Confidence 99999985 44567779987 6999999999999999999999998 432 2348999999998543 23
Q ss_pred CcEEEEeCCCCCCC-CCCCCHHHHHHHHHHHHhcCeEEEEeccCC--CCCC-----CCCCCchHHHHHHHHhcCcEEEEe
Q psy14428 310 RSILFLQTSSHNPT-GVDLSEDQWRQLAVVVKQRHLYPFFDMAYL--GLTS-----GDFDKDAFSLRYFAKEVGQLCLAQ 381 (583)
Q Consensus 310 ~~~~i~i~~p~NPT-G~~~s~~~~~~l~~~a~~~~i~iI~De~Y~--~l~~-----~~~~~~~~~~~~~~~~~~~vi~i~ 381 (583)
+++++++++||||+ |.+++.+++++|.++|++||++||+|++.. ...+ ++. ...++.. .++.+.
T Consensus 152 ~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~DaAr~~~na~~i~~r~~g~--~~~si~e------i~~e~~ 223 (431)
T cd00617 152 NIPYIVLTITNNTAGGQPVSMANLREVRELAHKYGIPVVLDAARFAENAYFIKEREEGY--RDKSIAE------IAREMF 223 (431)
T ss_pred CccEEEEECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhHhhhhhhhcccccc--cCCCHHH------HHHHhh
Confidence 47889999999998 999999999999999999999999999932 1112 111 1123332 245678
Q ss_pred cCcccccccCcc------ceEEEEEcCCchhHHHHHHHHHH
Q psy14428 382 SFSKNMGLYGER------VGTFSVLTPTSDETERIMSQLKI 416 (583)
Q Consensus 382 S~SK~~~l~GlR------iG~lv~~~p~~~~~~~li~~l~~ 416 (583)
|+||.+.|+|+| .||+++ ++ ++++++++.
T Consensus 224 s~sd~~~mS~~K~~~~~~GG~i~~--~d----~~l~~~~~~ 258 (431)
T cd00617 224 SYADGCTMSAKKDGLVNIGGFLAL--RD----DELYEEARQ 258 (431)
T ss_pred ccCCEEEEEeecCCCCccceEEEe--Cc----HHHHHHHHH
Confidence 999999999998 558888 64 368887764
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia. |
| >KOG1411|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.6e-26 Score=219.69 Aligned_cols=141 Identities=36% Similarity=0.650 Sum_probs=122.6
Q ss_pred EEecCCCCcCchhhhhhcCC-----CceeeeeccCCCCcc--------------------------cchh----------
Q psy14428 29 TVYFPTPTWNGHVRFCTDSR-----LNVGAYRYFDNKTNG--------------------------LDFA---------- 67 (583)
Q Consensus 29 ~~~~~~p~w~n~~~~~~~~~-----~~~~~y~~~~~~~~~--------------------------~d~~---------- 67 (583)
+-=+|||++|...++.+|.. |.|+.||+-.++--. ..|.
T Consensus 32 ~maPpDpILGVTeAfk~D~n~~KiNLgvGaYRdd~gKp~vL~~VrkAE~ql~~~~ldKEYlpI~Gl~eF~k~sakLa~G~ 111 (427)
T KOG1411|consen 32 EMAPPDPILGVTEAFKKDPNPKKINLGVGAYRDDNGKPYVLPSVRKAEQQLASLSLDKEYLPITGLAEFNKLSAKLALGD 111 (427)
T ss_pred CCCCCCCcccHHHHHhcCCCcceeeecccceecCCCCeeeeHHHHHHHHHHhhhcccchhccccchHHHHHHHHHHhhcC
Confidence 34689999999999999965 889999986665322 3333
Q ss_pred --hhHHHHHhhhhhcccccchhhhHHHHHHHhCCCCcEEEeCCCCCCChHhHhhhcCCcccccccccCCCCCccccCccc
Q psy14428 68 --GMMEDIKLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMME 145 (583)
Q Consensus 68 --~~~~~~~~a~~q~~~gtgal~~~~~~~~~~~~~~~~~~i~~ptw~nh~~if~~~g~~~~~y~Y~~~~~~~~d~~~m~~ 145 (583)
..|++.|++++||+|||||||+||+||++++|. +.+|||+|||+||..||+.+|++++.|+|||+.++++||++|++
T Consensus 112 ~s~~ik~~Ri~tvQ~lSGTGaLriga~Fl~~f~~~-~~I~ip~PTWgNh~~if~~ag~~~~~yrYyd~~t~gld~~g~le 190 (427)
T KOG1411|consen 112 NSPVIKEKRIVTVQTLSGTGALRVGAEFLARFYPS-RDIYIPDPTWGNHKNIFKDAGLPVKFYRYYDPKTRGLDFKGMLE 190 (427)
T ss_pred CchhhhccceeEEEeccCcchhhHHHHHHHhhccc-cceeecCCcccccCccccccCcceeeeeeccccccccchHHHHH
Confidence 456678999999999999999999999999996 99999999999999999999999999999999999999999998
Q ss_pred c-----chhhHhhccccccCCCCCccccCCccc
Q psy14428 146 D-----IKPLKQQLKGFNKDPHPKKMNLGVGAY 173 (583)
Q Consensus 146 ~-----~~~i~~l~~~~~~~~~~~~i~l~~g~~ 173 (583)
. ++.++.+|.| +|+|+++|.+..+|
T Consensus 191 dl~~~p~gs~ilLhaC---aHNPTGvDPt~eqw 220 (427)
T KOG1411|consen 191 DLGEAPEGSIILLHAC---AHNPTGVDPTKEQW 220 (427)
T ss_pred HHhcCCCCcEEEeehh---hcCCCCCCccHHHH
Confidence 4 7778889988 78999887766555
|
|
| >PRK10534 L-threonine aldolase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.1e-22 Score=208.07 Aligned_cols=271 Identities=13% Similarity=0.029 Sum_probs=174.7
Q ss_pred cccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHH
Q psy14428 166 MNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLR 245 (583)
Q Consensus 166 i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~ 245 (583)
|||+.... |.|++.+.+++.+.... ...|+|..+..+|++++|++++. +.+++ ++|+++++.
T Consensus 2 ~~~~~~~~------~~p~~~~~~a~~~~~~~--~~~Y~~~~~~~~L~~~la~~~g~--------~~~~v--~~~g~~a~~ 63 (333)
T PRK10534 2 IDLRSDTV------TRPSRAMLEAMMAAPVG--DDVYGDDPTVNALQDYAAELSGK--------EAALF--LPTGTQANL 63 (333)
T ss_pred cccccccC------CCCCHHHHHHHHhccCC--CcccCCCHHHHHHHHHHHHHhCC--------CeEEE--eCchHHHHH
Confidence 45665554 23667888887664432 45788888999999999999752 34456 778887776
Q ss_pred HHHHHHHHhCCCCCEEEEcCCCChh-hHHH-HhhcC-CeEEEEecccCCCCCCChhhHHHHHHcC---CCCcEEEEeCCC
Q psy14428 246 VGTAFLERFYPGVKTVYFPTPTWNG-HVRF-CTDSR-LNVGAYRYFDNKTNGLDFAGMMEDIKAM---PERSILFLQTSS 319 (583)
Q Consensus 246 l~~~~l~~~~~~gd~Vlv~~P~y~~-~~~~-~~~~G-~~~~~v~~~d~~~~g~d~~~l~~~l~~~---~~~~~~i~i~~p 319 (583)
+. + ..++.+||+|+++.|+|.. |... ....| ++++.++. + +++.+|++.+++++... ..+++++++|||
T Consensus 64 ~~--l-~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~d~~~l~~~i~~~~~~~~~~~lv~l~np 138 (333)
T PRK10534 64 VA--L-LSHCERGEEYIVGQAAHNYLYEAGGAAVLGSIQPQPIDA-A-ADGTLPLDKVAAKIKPDDIHFARTRLLSLENT 138 (333)
T ss_pred HH--H-HHhcCCCCeeEEechhhhhHhcCCchHHhcCceEEeecC-C-CCCCCCHHHHHHhhcccCcCcccceEEEEecC
Confidence 64 2 2345679999999888753 3221 23333 67888877 4 35788999998877321 015788999976
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccce-EEE
Q psy14428 320 HNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVG-TFS 398 (583)
Q Consensus 320 ~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG-~lv 398 (583)
+ ||.+++.+++++|+++|++++++||+||+|........ . .+...+....++++ .||||.|+++ +| |++
T Consensus 139 ~--~G~v~~~~~l~~i~~~~~~~~~~lvvDEA~~~~~~~~~--~-~~~~~~~~~~~~~~--~s~SK~~~~~---~G~~~~ 208 (333)
T PRK10534 139 H--NGKVLPREYLKQAWEFTRERNLALHVDGARIFNAVVAY--G-CELKEITQYCDSFT--ICLSKGLGTP---VGSLLV 208 (333)
T ss_pred C--CCeecCHHHHHHHHHHHHHcCCeEEeeHHHHHHHHHHc--C-CCHHHHHhcCCEEE--EEeEcCCCCc---ccceEE
Confidence 6 59999999999999999999999999999863211000 0 11222222223444 3899988764 78 577
Q ss_pred EEcCCchhHHHHHHHHHHHHhccccC--CChHHHHHHHHHhCC--hhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhH
Q psy14428 399 VLTPTSDETERIMSQLKILIRGFYSN--PPIHGARIVTEILSD--PKLKAQCDETERIMSQLKILIRGFYSNPPIHGARI 474 (583)
Q Consensus 399 ~~~p~~~~~~~li~~l~~~~~~~~~~--~s~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i 474 (583)
+ + +++++++.+.+.....+ .+.+.|.++...+++ ..+++..+++..+.+.+.+ .++...|++++|+
T Consensus 209 ~--~-----~~~i~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~r~~l~~~L~~---~g~~~~~~~~nfv 278 (333)
T PRK10534 209 G--N-----RDYIKRARRWRKMTGGGMRQAGILAAAGLYALKHNVARLQEDHDNAAWLAEQLRE---AGADVMRQDTNML 278 (333)
T ss_pred c--C-----HHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh---CCCccCCCCceEE
Confidence 6 5 58999998877654323 334667777666654 1222211112122222222 2455666689999
Q ss_pred HHHhc
Q psy14428 475 VTEIL 479 (583)
Q Consensus 475 ~~~~l 479 (583)
|+++.
T Consensus 279 ~~~~~ 283 (333)
T PRK10534 279 FVRVG 283 (333)
T ss_pred EEECC
Confidence 88764
|
|
| >PRK07049 methionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.1e-22 Score=210.43 Aligned_cols=199 Identities=18% Similarity=0.145 Sum_probs=158.5
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHH----hhcC
Q psy14428 204 NIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFC----TDSR 279 (583)
Q Consensus 204 ~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~----~~~G 279 (583)
+..-...|+++||++.+ .+++++ ++||++|+..+ +..++++||.|++++|+|..+...+ +..|
T Consensus 81 ~~Pt~~~Le~~lA~leg--------~~~~iv--~~sG~~Ai~~~---l~al~~~Gd~Vv~~~p~Y~~~~~~~~~~l~~~G 147 (427)
T PRK07049 81 NHPNSEIVEDRLAVYEG--------AESAAL--FSSGMSAIATT---LLAFVRPGDVILHSQPLYGGTETLLAKTFRNFG 147 (427)
T ss_pred CCcCHHHHHHHHHHHhC--------CCcEEE--EccHHHHHHHH---HHHHhCCCCEEEEcCCCcccHHHHHHHHHHhcC
Confidence 34446899999999875 246777 88888898874 4556677999999999999997664 5679
Q ss_pred CeEEEEecccCCCCCCChhhHHHHHHcC--CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHh---cCeEEEEeccCCC
Q psy14428 280 LNVGAYRYFDNKTNGLDFAGMMEDIKAM--PERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQ---RHLYPFFDMAYLG 354 (583)
Q Consensus 280 ~~~~~v~~~d~~~~g~d~~~l~~~l~~~--~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~---~~i~iI~De~Y~~ 354 (583)
++++.++. +.|++.+++.+... .+++++++++||+||||.+++.+++.+|++.|.. ++++||+||+|..
T Consensus 148 i~~v~~~~------~~d~~~l~~~l~~~~~~~~tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDety~~ 221 (427)
T PRK07049 148 VGAVGFAD------GLSEAAIGAAAEAAAAKGRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIACDNTLLG 221 (427)
T ss_pred cEEEEEeC------CCCHHHHHHHHHhhccCCCceEEEEECCCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEECCccc
Confidence 88777753 23677777766432 3578999999999999999999999999998754 6899999999876
Q ss_pred CCCCCCCCchHHHHHHHHhcCcEEEEecCccccc-ccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHH
Q psy14428 355 LTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMG-LYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIV 433 (583)
Q Consensus 355 l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~-l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~ 433 (583)
..... ++ ..+..|++.||||.++ .+|+|+||+++ + +++++++.+.+.....+.+++.|+++
T Consensus 222 ~~~~~------pl-----~~g~divv~S~SK~~gG~~glr~G~vv~--~-----~~l~~~l~~~~~~~g~~ls~~~a~l~ 283 (427)
T PRK07049 222 PVFQK------PL-----EHGADLSVYSLTKYVGGHSDLVAGAVLG--R-----KALIRQVRALRSAIGTQLDPHSCWML 283 (427)
T ss_pred cccCC------cc-----ccCCCEEEEcCceeecCCCCcEEEEEEC--C-----HHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 54321 12 1245788899999998 69999999998 6 57899999888777888999999999
Q ss_pred HHHhCC
Q psy14428 434 TEILSD 439 (583)
Q Consensus 434 ~~~l~~ 439 (583)
...++.
T Consensus 284 ~r~L~t 289 (427)
T PRK07049 284 GRSLET 289 (427)
T ss_pred HcCCCh
Confidence 998874
|
|
| >TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-20 Score=195.62 Aligned_cols=246 Identities=11% Similarity=0.058 Sum_probs=168.9
Q ss_pred hHHHHHHHHHhccCCCCCCC-CCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEE
Q psy14428 184 PSVKEAERRIYEKNLDHEYA-NIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVY 262 (583)
Q Consensus 184 ~~v~~a~~~~~~~~~~~~Y~-~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vl 262 (583)
+.+.++..+..+. |. +..-..+|++++|++++ ++++++++ ++|+.+++..+ +..+.++||.|+
T Consensus 36 ~~~~~~~~~~~~~-----~~g~~~~~~~Le~~lA~~~g------~~~e~ilv--~~gg~~a~~~~---~~al~~~gd~Vl 99 (346)
T TIGR03576 36 FKIDEEDLELLET-----YVGPAIFEEKVQELGREHLG------GPEEKILV--FNRTSSAILAT---ILALEPPGRKVV 99 (346)
T ss_pred hhHHHHHHHHHHH-----hcCCHHHHHHHHHHHHHHcC------CCcceEEE--ECCHHHHHHHH---HHHhCCCCCEEE
Confidence 5666666665543 31 11223455555555553 36789999 99999999884 556777899999
Q ss_pred Ec---CCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHH
Q psy14428 263 FP---TPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVV 339 (583)
Q Consensus 263 v~---~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a 339 (583)
++ .|+|..|...++..|++++.+ . +++.+ +. .++++++++ +++||+|.+++.+++++|+++|
T Consensus 100 i~~~d~p~~~s~~~~~~l~ga~~~~~-----~----~l~~l----~~-~~~~~lIii-tg~s~~G~v~~~~~L~~i~~la 164 (346)
T TIGR03576 100 HYLPEKPAHPSIPRSCKLAGAEYFES-----D----ELSEL----KK-IDGTSLVVI-TGSTMDLKVVSEEDLKRVIKQA 164 (346)
T ss_pred ECCCCCCCchhHHHHHHHcCCEEecc-----C----CHHHH----hh-CcCceEEEE-ECCCCCCcccCHHHHHHHHHHH
Confidence 75 478999999999999876322 1 33332 22 234566666 5679999999999999999999
Q ss_pred HhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHh
Q psy14428 340 KQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIR 419 (583)
Q Consensus 340 ~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~ 419 (583)
++++++||+||+|..+..+..... +...+ . .-+++.|||| +++|+|+||+++ + +++++.+.+..+
T Consensus 165 ~~~~~~livDEAy~~~~~~~~~~~--~~~~~---~-~divv~s~SK--alaG~r~G~v~~--~-----~~li~~l~~~~~ 229 (346)
T TIGR03576 165 KSKEAIVLVDDASGARVRRLYGQP--PALDL---G-ADLVVTSTDK--LMDGPRGGLLAG--R-----KELVDKIKSVGE 229 (346)
T ss_pred HHcCCEEEEECCccccccccCCCC--CHHHc---C-CcEEEeccch--hccccceEEEEe--C-----HHHHHHHHHhhc
Confidence 999999999999998764311011 12221 2 2366779999 579999999999 7 589999999888
Q ss_pred ccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhh---ccCCCccchhhHHHHhc
Q psy14428 420 GFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRG---FYSNPPIHGARIVTEIL 479 (583)
Q Consensus 420 ~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~---~~~~~p~~g~~i~~~~l 479 (583)
...++++++.|.++..+|+.... ...+..+..+..+++. .+...|+.++|+|+++.
T Consensus 230 ~~~~s~~~~~~~aa~~aL~~~~~----~~~~~~l~~r~~~~~~~l~~~~~~~~~~~f~~~~~~ 288 (346)
T TIGR03576 230 QFGLEAQAPLLAAVVRALEEFEL----SRIRDAFKRKEEVYLRLFDKLNVERTPTGFVIKGVE 288 (346)
T ss_pred CcccCccHHHHHHHHHHHhhccH----HHHHHHHHHHHHHHHHHHHhCCCCcCCCeEEEEeCC
Confidence 77777889999999999875321 1223333333333221 24555666778888764
|
Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog. |
| >TIGR00858 bioF 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-20 Score=196.84 Aligned_cols=220 Identities=15% Similarity=0.094 Sum_probs=155.0
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhcc-CC-CCCCCCCCC----CHHHHHHHHHHHhCCCCCCCCCCCeEE
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEK-NL-DHEYANIGG----DAKFCKLAAQLAYGEDFPAFKDNRLAI 234 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~-~~-~~~Y~~~~G----~~~Lr~aia~~~~~~~g~~~~~~~I~i 234 (583)
.+.+.+||+.|.+ .|.+ .++.+.+++.+.+.. +. ...|....| ..+++++++++++ .+++|++
T Consensus 14 ~g~~~id~~~~~~---~g~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~-------~~~~i~~ 82 (360)
T TIGR00858 14 DGRRLLNFSSNDY---LGLA-SHPEVIQAAQQGAEQYGAGSTASRLVSGNSPLHEELEEELAEWKG-------TEAALLF 82 (360)
T ss_pred CCceEEecccCCc---ccCC-CCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhC-------CCCEEEE
Confidence 4567899999843 3322 446777777776654 11 112222234 4558888888875 2467887
Q ss_pred EecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCC-CCcEE
Q psy14428 235 VQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMP-ERSIL 313 (583)
Q Consensus 235 ~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~-~~~~~ 313 (583)
++|+.+.+ .+ +..++.+||+|++++|+|..+...++..|++++.++. +|++.+++.++... .++++
T Consensus 83 --~~G~~~~~-~~---l~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~~~~~~~~~~~~ 149 (360)
T TIGR00858 83 --SSGYLANV-GV---ISALVGKGDLILSDALNHASLIDGCRLSGARVRRYRH-------NDVEHLERLLEKNRGERRKL 149 (360)
T ss_pred --CchHHHHH-HH---HHHhCCCCCEEEEEccccHHHHHHHHhcCCceEEecC-------CCHHHHHHHHHHcccCCCeE
Confidence 88865544 32 3345677999999999999999999999999887754 37888888876432 45789
Q ss_pred EEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCcc
Q psy14428 314 FLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGER 393 (583)
Q Consensus 314 i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlR 393 (583)
+++++++||||...+ +++|.++|++++++||+||+|..+.++.......+...+ +..+++|+++||||+|+++|
T Consensus 150 v~~~~~~~~~G~~~~---~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~-~~~~~~i~i~s~sK~~~~~g-- 223 (360)
T TIGR00858 150 IVTDGVFSMDGDIAP---LPQLVALAERYGAWLMVDDAHGTGVLGEDGRGTLEHFGL-KPEPVDIQVGTLSKALGSYG-- 223 (360)
T ss_pred EEEeCCccCCCCCcC---HHHHHHHHHHcCcEEEEECcccccCcCCCCCchHHhcCC-CccCCcEEEEechhhhhccC--
Confidence 999999999998776 567788899999999999999877665310111111111 22468999999999999777
Q ss_pred ceEEEEEcCCchhHHHHHHHHHHHH
Q psy14428 394 VGTFSVLTPTSDETERIMSQLKILI 418 (583)
Q Consensus 394 iG~lv~~~p~~~~~~~li~~l~~~~ 418 (583)
||+++ + +++++.+....
T Consensus 224 -G~~~~--~-----~~~~~~~~~~~ 240 (360)
T TIGR00858 224 -AYVAG--S-----QALIDYLINRA 240 (360)
T ss_pred -cEEEc--C-----HHHHHHHHHhC
Confidence 99998 6 57888776543
|
This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model. |
| >PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.7e-21 Score=202.35 Aligned_cols=222 Identities=10% Similarity=0.022 Sum_probs=159.7
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCC---CCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEec
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEY---ANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQG 237 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y---~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t 237 (583)
.+.+.|+|+.|.+. +.+ +++.+.++..+.+... ...| ....|.+++|+++++++.+.+|. +++|++ |
T Consensus 40 ~g~~~i~l~~~~~~---~~~-~~~~i~~a~~~~~~~~-~~~~~~~~~~~G~~~l~~~l~~~la~~~g~---~~~i~~--t 109 (397)
T PRK06939 40 DGKEVINFCANNYL---GLA-NHPELIAAAKAALDSH-GFGMASVRFICGTQDLHKELEEKLAKFLGT---EDAILY--S 109 (397)
T ss_pred CCCeEEEeeccCcc---ccC-CCHHHHHHHHHHHHHc-CCCCcccccccCCcHHHHHHHHHHHHHhCC---CcEEEE--c
Confidence 45678999988742 111 4567777777766542 1233 33579999999999999887663 378888 8
Q ss_pred CCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcC---CCCcEEE
Q psy14428 238 ISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAM---PERSILF 314 (583)
Q Consensus 238 ~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~---~~~~~~i 314 (583)
+| ++++..+ +..++++||.|++++|+|+.+...++..|++++.++. .|++.+++.++.. ..+++++
T Consensus 110 sG-~~a~~~~---~~~l~~~gd~vi~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~i~~~~~~~~~~~~v 178 (397)
T PRK06939 110 SC-FDANGGL---FETLLGKEDAIISDALNHASIIDGVRLCKAKRYRYAN-------NDMADLEAQLKEAKEAGARHKLI 178 (397)
T ss_pred Ch-HHHHHHH---HHHhCCCCCEEEEEhhhhHHHHHHHHhcCCceEEeCC-------CCHHHHHHHHHhhhccCCCCeEE
Confidence 88 6677764 4456778999999999999999999999999877754 2778888777542 2367888
Q ss_pred EeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHH-hcCcEEEEecCcccccccCcc
Q psy14428 315 LQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAK-EVGQLCLAQSFSKNMGLYGER 393 (583)
Q Consensus 315 ~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~-~~~~vi~i~S~SK~~~l~GlR 393 (583)
++.+.+||||.. +++++|+++|++++++||+||+|....++.. ....... .+ ..+.+++++||||.++ |+|
T Consensus 179 ~~~~v~~~~G~~---~~~~~l~~la~~~~~~li~De~~~~g~~~~~--~~~~~~~-~~~~~~~~i~~~S~sK~~~--g~r 250 (397)
T PRK06939 179 ATDGVFSMDGDI---APLPEICDLADKYDALVMVDDSHAVGFVGEN--GRGTVEH-FGVMDRVDIITGTLGKALG--GAS 250 (397)
T ss_pred EEecCcCCCCCc---CCHHHHHHHHHHhCCEEEEECcccccCcCCC--CCCHHHH-cCCCCCCcEEEEECHHHhC--ccC
Confidence 888889999974 4578889999999999999999963222210 1111111 11 1235799999999984 669
Q ss_pred ceEEEEEcCCchhHHHHHHHHHHHH
Q psy14428 394 VGTFSVLTPTSDETERIMSQLKILI 418 (583)
Q Consensus 394 iG~lv~~~p~~~~~~~li~~l~~~~ 418 (583)
+||+++ | +++++.+....
T Consensus 251 ~G~v~~--~-----~~~~~~l~~~~ 268 (397)
T PRK06939 251 GGYTAG--R-----KEVIDWLRQRS 268 (397)
T ss_pred ceEEEe--C-----HHHHHHHHHhC
Confidence 999999 7 57888887643
|
|
| >PRK02627 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-20 Score=201.32 Aligned_cols=248 Identities=10% Similarity=0.071 Sum_probs=175.7
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
.+...+|+..|.+....|+. .+.+.+++.+.+... .+....+..++++++++++.+..+ .+++++ |+||
T Consensus 37 dg~~~iD~~~g~~~~~lG~~--~p~v~~a~~~~~~~~---~~~~~~~~~~~~~~la~~l~~~~~----~~~v~~--~~gg 105 (396)
T PRK02627 37 DGKEYLDFLAGIAVNNLGHC--HPKLVEAIQEQAAKL---IHTSNLYYIEPQEELAEKLVELSG----MDKVFF--CNSG 105 (396)
T ss_pred CCCEEEECCccHHhccCCCC--CHHHHHHHHHHHhhc---cccccccCCHHHHHHHHHHHhhcC----CCEEEE--CCCc
Confidence 34567899988887666642 367887777766542 111223346889999999987643 379999 9999
Q ss_pred hhHHHHHHHHHHHhCCC----CCEEEEcCCCChhhHHHHhhcCCeE-EEEecccCCCCCC------ChhhHHHHHHcCCC
Q psy14428 241 SGSLRVGTAFLERFYPG----VKTVYFPTPTWNGHVRFCTDSRLNV-GAYRYFDNKTNGL------DFAGMMEDIKAMPE 309 (583)
Q Consensus 241 ~~al~l~~~~l~~~~~~----gd~Vlv~~P~y~~~~~~~~~~G~~~-~~v~~~d~~~~g~------d~~~l~~~l~~~~~ 309 (583)
++|+.++..++.....+ .++|++.+++|..+.......+... ...+. .+-..++ |++.+++.+ .+
T Consensus 106 ~eA~~~al~~a~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~l~~~i---~~ 181 (396)
T PRK02627 106 AEANEAAIKLARKYGHKKGIEKPEIITAENSFHGRTLATLSATGQPKYQEGF-EPLVEGFIYVPFNDIEALKAAI---TD 181 (396)
T ss_pred HHHHHHHHHHHHHHhcccCCCCCeEEEECCCcCcccHHHHHhcCCccccccC-CCCCCCceEeCCCCHHHHHHhc---CC
Confidence 99999976554433221 1789999999987765544443222 11111 0101133 788888777 46
Q ss_pred CcEEEEeCCCCCCCC-CCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCccccc
Q psy14428 310 RSILFLQTSSHNPTG-VDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMG 388 (583)
Q Consensus 310 ~~~~i~i~~p~NPTG-~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~ 388 (583)
+++++++.++|||+| .+++++.+++|.++|++++++||+||+|.+|.+.+ ...+...+ +..++ +.||||.++
T Consensus 182 ~~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~g---~~~~~~~~-~~~pd---i~t~sK~~~ 254 (396)
T PRK02627 182 KTAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTG---KLFAYQHY-GIEPD---IMTLAKGLG 254 (396)
T ss_pred CeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcCCCccC---ceeeehhc-CCCCC---EEEEcchhh
Confidence 788888888899999 78999999999999999999999999999987654 11122121 21223 347999999
Q ss_pred ccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhC
Q psy14428 389 LYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILS 438 (583)
Q Consensus 389 l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~ 438 (583)
+|+|+||+++ + +++++.+........++.+++.|.++.+.++
T Consensus 255 -~G~rig~~~~--~-----~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~ 296 (396)
T PRK02627 255 -GGVPIGAVLA--K-----EKVADVFTPGDHGSTFGGNPLACAAALAVIE 296 (396)
T ss_pred -CCcccEEEEE--c-----HHHHhccCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 9999999999 7 5788888765555677889999999888886
|
|
| >TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.8e-20 Score=197.32 Aligned_cols=242 Identities=13% Similarity=0.080 Sum_probs=172.1
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhcc-C-CCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecC
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEK-N-LDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGI 238 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~-~-~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~ 238 (583)
.+++.+||+.+.+. +.+ +++.+.++..+...+ . ....|.+..|.+++|+++++++.+..+. ++.|++ |+
T Consensus 31 ~g~~~id~~~~~~~---g~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~l~~~~g~---~~~i~~--~s 101 (385)
T TIGR01825 31 NGKEVINLSSNNYL---GFA-DHPRLKEAAAQAIQQYGVGAGAVRTIAGTLRLHEELEEKLAKFKKT---EAALVF--QS 101 (385)
T ss_pred CCceEEEeeccCcc---CCC-CCHHHHHHHHHHHHHcCCCCCccCcccCCcHHHHHHHHHHHHHhCC---CcEEEE--Cc
Confidence 35678999887531 221 456777777666653 2 2346888899999999999999887663 456888 88
Q ss_pred CchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcC-CCCcEEEEeC
Q psy14428 239 SGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAM-PERSILFLQT 317 (583)
Q Consensus 239 G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~-~~~~~~i~i~ 317 (583)
|+ +++..+ +..++.+||.|++++|+|..+...++..|++++.++ .+|++.+++.+.+. .+++++++++
T Consensus 102 G~-~a~~~a---~~~~~~~gd~vi~~~~~~~~~~~~~~~~g~~~~~~~-------~~d~~~l~~~l~~~~~~~~~~v~~~ 170 (385)
T TIGR01825 102 GF-NTNQGV---LSALLRKGDIVLSDELNHASIIDGLRLTKATKKIYK-------HADMDDLDRVLRENPSYGKKLIVTD 170 (385)
T ss_pred HH-HHHHHH---HHHhCCCCCEEEEEccccHHHHHHHHhcCCceEEeC-------CCCHHHHHHHHHhhccCCCeEEEEe
Confidence 85 455543 344567799999999999999888888888876553 34788888777543 3468899999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEE
Q psy14428 318 SSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTF 397 (583)
Q Consensus 318 ~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~l 397 (583)
+++||||.+.+ +++|.++|++|++++|+||+|..+.++.. .......+.-..+.++++.||||.++++| ||+
T Consensus 171 ~v~~~tG~~~~---~~~i~~l~~~~~~~li~De~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~s~sK~~~~~g---G~~ 242 (385)
T TIGR01825 171 GVFSMDGDVAP---LPEIVELAERYGAVTYVDDAHGSGVMGEA--GRGTVHHFGLEDKVDIQVGTLSKAIGVVG---GYA 242 (385)
T ss_pred cCCcCCCCccC---HHHHHHHHHHhCCEEEEECcccccCcCCC--CCccHhhcCCCcCCcEEEEeccHHhhcCC---CEE
Confidence 99999999887 56789999999999999999988766521 11111111112467999999999998766 999
Q ss_pred EEEcCCchhHHHHHHHHHHHHh-cccc-CCChHHHHHHHHHh
Q psy14428 398 SVLTPTSDETERIMSQLKILIR-GFYS-NPPIHGARIVTEIL 437 (583)
Q Consensus 398 v~~~p~~~~~~~li~~l~~~~~-~~~~-~~s~~~q~~~~~~l 437 (583)
++ + +++++.+..... .... ..+++.|.++...+
T Consensus 243 ~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al 277 (385)
T TIGR01825 243 AG--H-----KELIEYLKNRARPFLFSTAQPPAVVAALAAAV 277 (385)
T ss_pred ec--C-----HHHHHHHHHhCccccccCCCCHHHHHHHHHHH
Confidence 88 6 578888876533 2222 23456666665554
|
This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. |
| >TIGR00707 argD acetylornithine and succinylornithine aminotransferases | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.3e-20 Score=196.32 Aligned_cols=285 Identities=13% Similarity=0.112 Sum_probs=184.8
Q ss_pred CCCccccCCccccCCCCCCCCChHHHHHHHHHhccCC--CCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCC
Q psy14428 162 HPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNL--DHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGIS 239 (583)
Q Consensus 162 ~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~--~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G 239 (583)
+...||+..|.+.+..|. ..+.+.+++.+...+.. ...| + .+.++.+++.+.+.++. +++++ ++|
T Consensus 26 g~~~id~~~~~~~~~lG~--~~p~v~~a~~~~~~~~~~~~~~~-~----~~~~~~l~~~la~~~g~----~~~~~--~~s 92 (379)
T TIGR00707 26 GKEYLDFVAGIAVNSLGH--AHPKLVEALKEQLEKLVHVSNLY-Y----TEPQEELAEKLVEHSGA----DRVFF--CNS 92 (379)
T ss_pred CCEEEEcCcchhhccCCC--CCHHHHHHHHHHHhhcccccccc-C----CHHHHHHHHHHHhhCCC----CEEEE--eCC
Confidence 456789998877666663 34777777776665421 1223 2 23444455555444443 48999 999
Q ss_pred chhHHHHHHHHHHHhCC----CCCEEEEcCCCChhhHHHHhhcCCeEEE----EecccCCCCCC----ChhhHHHHHHcC
Q psy14428 240 GSGSLRVGTAFLERFYP----GVKTVYFPTPTWNGHVRFCTDSRLNVGA----YRYFDNKTNGL----DFAGMMEDIKAM 307 (583)
Q Consensus 240 ~~~al~l~~~~l~~~~~----~gd~Vlv~~P~y~~~~~~~~~~G~~~~~----v~~~d~~~~g~----d~~~l~~~l~~~ 307 (583)
|++++.++..+++.+.. ++|+|++++|+|..+.......+..... .++ ..+ ..+ |++.+++.+
T Consensus 93 g~~a~~~a~~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~d~~~l~~~~--- 167 (379)
T TIGR00707 93 GAEANEAALKLARKYTGDKGKEKKKIIAFENSFHGRTMGALSATGQPKYQKGFEPL-VPG-FSYAPYNDIESLKKAI--- 167 (379)
T ss_pred cHHHHHHHHHHHHHHhhccCCCCCeEEEECCCcCCccHHHHHhcCChhhhccCCCC-CCC-ceeeCCCCHHHHHHHh---
Confidence 99999987555443332 3799999999998887666655554321 222 111 111 778888777
Q ss_pred CCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCccc
Q psy14428 308 PERSILFLQTSSHNPTGVD-LSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKN 386 (583)
Q Consensus 308 ~~~~~~i~i~~p~NPTG~~-~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~ 386 (583)
.+++++++++.++||+|.. ++.+++++|.++|++++++||+||+|.+|.+.+ ...+.... ...++++ +|||.
T Consensus 168 ~~~~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g---~~~~~~~~-~~~~d~~---t~sK~ 240 (379)
T TIGR00707 168 DDETAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTG---KFFAYEHY-GIEPDII---TLAKG 240 (379)
T ss_pred hhCeeEEEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccc---hhhhHHhc-CCCCCEE---EEccc
Confidence 4467788876556666753 799999999999999999999999999887654 11222221 2223433 78999
Q ss_pred ccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhC---ChhhhhhhhhHHHH-HHHHHHHHh-
Q psy14428 387 MGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILS---DPKLKAQCDETERI-MSQLKILIR- 461 (583)
Q Consensus 387 ~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~-~~~l~~~~r- 461 (583)
++ +|+|+||+++ + +++++.+........++.+.+.|.++...++ ++.+.+++.+.++. .+.+.+...
T Consensus 241 ~~-~G~riG~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~aa~aaL~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 312 (379)
T TIGR00707 241 LG-GGVPIGATLA--K-----EEVAEAFTPGDHGSTFGGNPLACAAALAVLEVIEKERLLENVKEKGDYFKERLEELGKN 312 (379)
T ss_pred cc-CCcccEEEEE--c-----HHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 99 9999999999 6 5788888875555566789999999986664 44444554444332 233333322
Q ss_pred hccCCCccchhhHHHHhc
Q psy14428 462 GFYSNPPIHGARIVTEIL 479 (583)
Q Consensus 462 ~~~~~~p~~g~~i~~~~l 479 (583)
..+...+..|.++|..+.
T Consensus 313 ~~~~~~~~~g~~~~~~~~ 330 (379)
T TIGR00707 313 YPNKEVRGKGLMLGIELE 330 (379)
T ss_pred CCCCccccCceEEEEEec
Confidence 122223446777777654
|
Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097) |
| >cd06502 TA_like Low-specificity threonine aldolase (TA) | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-20 Score=194.97 Aligned_cols=264 Identities=13% Similarity=0.032 Sum_probs=179.1
Q ss_pred CChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEE
Q psy14428 182 VLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTV 261 (583)
Q Consensus 182 ~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~V 261 (583)
+++.+.+++.+.... ...|.+..+..+|++.++++++ ++++++ ++||++++.++ +..++++||+|
T Consensus 10 ~~~~v~~a~~~~~~~--~~~~~~~~~~~~l~~~~a~~~g--------~~~~~~--~~~gt~a~~~~---~~~l~~~gd~v 74 (338)
T cd06502 10 PTPEMLEAMAAANVG--DDVYGEDPTTAKLEARAAELFG--------KEAALF--VPSGTAANQLA---LAAHTQPGGSV 74 (338)
T ss_pred CCHHHHHHHHhcccC--CcccCCCHHHHHHHHHHHHHhC--------CCeEEE--ecCchHHHHHH---HHHhcCCCCeE
Confidence 557888887764432 2367777788899999988875 356777 78888888874 45567789999
Q ss_pred EEcCCCChhhHH---HHhhcCCeEEEEecccCCCCCCChhhHHHHHHcC----CCCcEEEEeCCCCCCCCCCCCHHHHHH
Q psy14428 262 YFPTPTWNGHVR---FCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAM----PERSILFLQTSSHNPTGVDLSEDQWRQ 334 (583)
Q Consensus 262 lv~~P~y~~~~~---~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~----~~~~~~i~i~~p~NPTG~~~s~~~~~~ 334 (583)
++++|+|..... .....|++++.++. +. +.+|++.+++.+... .+++++++++||||| |.+++.+++++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~g~~~~~v~~-~~--~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~-g~~~~~~~l~~ 150 (338)
T cd06502 75 ICHETAHIYTDEAGAPEFLSGVKLLPVPG-EN--GKLTPEDLEAAIRPRDDIHFPPPSLVSLENTTEG-GTVYPLDELKA 150 (338)
T ss_pred EEecCcceeeecCCcHHHHcCceEEeecC-CC--CcCCHHHHHHHhhccCCCcCCcceEEEEEeecCC-ccccCHHHHHH
Confidence 999999875432 34557999999987 33 578999999988532 136789999999998 77789999999
Q ss_pred HHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHH
Q psy14428 335 LAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQL 414 (583)
Q Consensus 335 l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l 414 (583)
|+++|++++++||+||+|..+..... .. ++..+. .... +++.|+||.|++|| |++++ .+ +++++++
T Consensus 151 i~~~~~~~~~~livDea~~~~~~~~~--~~-~~~~~~-~~~d-~~~~s~sK~~~~~~---g~~~~--~~----~~~~~~~ 216 (338)
T cd06502 151 ISALAKENGLPLHLDGARLANAAAAL--GV-ALKTYK-SGVD-SVSFCLSKGGGAPV---GAVVV--GN----RDFIARA 216 (338)
T ss_pred HHHHHHHcCCeEeechHHHHHHHHhc--CC-CHHHHH-hcCC-EEEEeccccCCCcc---ceEEE--CC----HHHHHHH
Confidence 99999999999999999864432110 01 222221 2223 45779999999887 65543 22 5788888
Q ss_pred HHHHhcc--ccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhh-ccCCCccchhhHHHHh
Q psy14428 415 KILIRGF--YSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRG-FYSNPPIHGARIVTEI 478 (583)
Q Consensus 415 ~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~-~~~~~p~~g~~i~~~~ 478 (583)
....... ....+.+.|.++...+++..+.+..++.....+.+.+.++. .....|+.++++....
T Consensus 217 ~~~~~~~~~~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~ 283 (338)
T cd06502 217 RRRRKQAGGGMRQSGFLAAAGLAALENDLWLRRLRHDHEMARRLAEALEELGGLESEVQTNIVLLDP 283 (338)
T ss_pred HHHHHHhCCChhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCeEEEec
Confidence 7765332 23456778888888887654444333333333333333322 2334455666665554
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway. |
| >PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.6e-20 Score=184.95 Aligned_cols=303 Identities=16% Similarity=0.170 Sum_probs=191.9
Q ss_pred CCCC-CCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHh-----CC--------CCCEEEEc
Q psy14428 199 DHEY-ANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERF-----YP--------GVKTVYFP 264 (583)
Q Consensus 199 ~~~Y-~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~-----~~--------~gd~Vlv~ 264 (583)
..+| +...|+++.|+-.|+.+. ++++||++ |++.++.+...++... .. +.-+.++|
T Consensus 61 ~RNY~G~l~Gipe~r~l~a~llg------v~~~~viv----~gNSSL~lM~d~i~~a~~~G~~~~~~PW~~~~~vKfLCP 130 (425)
T PF12897_consen 61 CRNYPGGLDGIPEARELFAELLG------VPPENVIV----GGNSSLNLMHDTISRAMLHGVPGSETPWCKEEKVKFLCP 130 (425)
T ss_dssp TTSS-S-SS--HHHHHHHHHHHT------S-GGGEEE-----SS-HHHHHHHHHHHHHHH--TT-SS-GGGSS--EEEEE
T ss_pred ccCCCCccCChHHHHHHHHHHhC------CCHHHEEE----eccchHHHHHHHHHHHHhcCCCCCCCCchhccCceEEec
Confidence 5789 899999999999999996 77899988 7788888765544321 11 12367999
Q ss_pred CCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHH-HHhcC
Q psy14428 265 TPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVV-VKQRH 343 (583)
Q Consensus 265 ~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~-a~~~~ 343 (583)
.|+|..+..+.+..|++.++||+ .+ .|+|.+.+++.+.+....+-+.++|..+||||.++|.|..++|+.+ ....+
T Consensus 131 vPGYDRHFai~E~~Giemi~VpM-~~--dGPDmD~Ve~LV~~D~svKGiWcVP~ySNPtG~tySde~vrrlA~m~~AA~D 207 (425)
T PF12897_consen 131 VPGYDRHFAITEHFGIEMIPVPM-TE--DGPDMDMVEELVAEDPSVKGIWCVPKYSNPTGITYSDEVVRRLAAMKTAAPD 207 (425)
T ss_dssp ES--HHHHHHHHHCT-EEEEEEE-ET--TEE-HHHHHHHTHTSTTEEEEEE-SSS-TTT-----HHHHHHHHHS--SSTT
T ss_pred CCCchHHHHHHHhhCcEEEecCC-CC--CCCCHHHHHHHHhcCCccceEEeCCCccCCCCccCCHHHHHHHhcCCcCCcC
Confidence 99999999999999999999999 44 5899999999886656667788899999999999999999999988 44689
Q ss_pred eEEEEeccCCCCCC-CCCCCch-HHHHHH---HHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHH
Q psy14428 344 LYPFFDMAYLGLTS-GDFDKDA-FSLRYF---AKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILI 418 (583)
Q Consensus 344 i~iI~De~Y~~l~~-~~~~~~~-~~~~~~---~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~ 418 (583)
.-|+-|++|.--.+ ++.+... ..+... ....++++.+.|.||.- .||-.|+++.+ + ++.++.+++..
T Consensus 208 FRI~WDNAY~vHhL~~~~~~~~~~nil~~~~~AGnpdrv~~F~STSKIT-f~GaGva~~aa--S-----~~Nl~~~~~~~ 279 (425)
T PF12897_consen 208 FRIFWDNAYAVHHLYDEEPRDALLNILDACAKAGNPDRVYVFASTSKIT-FPGAGVAFFAA--S-----EANLAWIKKHL 279 (425)
T ss_dssp -EEEEE-TTTT-BSSSSSS------HHHHHHHTT-TTSEEEEEESTTTS--TTSS-EEEEE--------HHHHHHHHHHH
T ss_pred eEEEeecCceEeeccccccchhhhHHHHHHHHcCCCCeEEEEecccccc-cCCcceeeeec--C-----HHHHHHHHHHh
Confidence 99999999975554 2211111 122222 23468999999999977 59999999999 6 57888888887
Q ss_pred hccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHhcCChhHHHHHHHHHHHHHHH
Q psy14428 419 RGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNR 498 (583)
Q Consensus 419 ~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~l~~~~~~~~~~~~l~~~~~~ 498 (583)
.....++..+.|..-++++.+.. +....|+++-++.
T Consensus 280 ~~~tIgpdKvNQLRHvrff~d~~--------------------------------------------gGv~aHM~kHa~i 315 (425)
T PF12897_consen 280 SVQTIGPDKVNQLRHVRFFKDAE--------------------------------------------GGVRAHMRKHAAI 315 (425)
T ss_dssp HHH-S---HHHHHHHHHHHHSHH--------------------------------------------THHHHHHHHHHHH
T ss_pred cCceeCccHHHHHHHHHHhcChh--------------------------------------------hHHHHHHHHHHHH
Confidence 77788888888888888877621 0123345555555
Q ss_pred HHHHHHHHHHHHHh-cC-CCCCcccccccccceeecCCChhhhhhhhhhhhHHHHHHHHhhcCCCccccccc
Q psy14428 499 ISSIREELKSKILD-KG-SKKNWDHITNQKGMFCYTGLSASQGMSNRISSIREELKSKILDKGSKKNWDHIT 568 (583)
Q Consensus 499 ~~~~r~~l~~~L~~-~~-~pg~~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 568 (583)
++-+.+++.+.|++ ++ ..|--....|+||+|+..+..+..- -++.++..+-++.+...|.+.++..+.
T Consensus 316 l~PKF~~V~~~L~~~L~~~~~ia~Wt~P~GGYFIsld~~~G~A--krvV~lakeAGV~LT~AGAtfPyg~DP 385 (425)
T PF12897_consen 316 LRPKFEAVLEILEEELGDGLGIASWTKPKGGYFISLDVLDGTA--KRVVELAKEAGVALTPAGATFPYGKDP 385 (425)
T ss_dssp HHHHHHHHHHHHHHHHGTGGTSEEE---SBSS-EEEEESTT-H--HHHHHHHHHTTEE---TTTTSGGG--T
T ss_pred HhhhHHHHHHHHHHhcCCCCCeeEecCCCCceEEEEecCCChH--HHHHHHHHHhCceeCCCCCCCCCCCCC
Confidence 66667777777765 33 1122356789999998866544322 234457788888888888888776654
|
; PDB: 3D6K_C 3EZ1_A 3PPL_B. |
| >PLN02721 threonine aldolase | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.7e-20 Score=193.11 Aligned_cols=219 Identities=14% Similarity=0.073 Sum_probs=146.4
Q ss_pred CccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhH
Q psy14428 164 KKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGS 243 (583)
Q Consensus 164 ~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~a 243 (583)
.+++|+.+.+. .+.+.+.+++...........|.|. ..+||++++++++.. .+++ +++|+++
T Consensus 6 ~~~~~~~~~~~------~~~~~~~~a~~~~~~~~~~~~~~~~--~~~l~~~la~~~~~~--------~~~~--~~~Gs~a 67 (353)
T PLN02721 6 RVVDLRSDTVT------KPTDAMRAAMANAEVDDDVLGYDPT--ALRLEEEMAKIFGKE--------AALF--VPSGTMG 67 (353)
T ss_pred hhhhhhccccc------CCCHHHHHHHHhccCCCcccCCCHH--HHHHHHHHHHHhCCc--------eeEE--ecCccHH
Confidence 45778877774 2567888887654112123334333 799999999999742 2345 5555555
Q ss_pred HHHHHHHHHHhCC-CCCEEEEcCCCChhhHH---HHhhcCCeEEEEecccCCCCCCChhhHHHHHHcC----CCCcEEEE
Q psy14428 244 LRVGTAFLERFYP-GVKTVYFPTPTWNGHVR---FCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAM----PERSILFL 315 (583)
Q Consensus 244 l~l~~~~l~~~~~-~gd~Vlv~~P~y~~~~~---~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~----~~~~~~i~ 315 (583)
..++ +..++. +||.|++++|+|..... .+...|++++.+|. ++ ++.+|++.+++.+.+. .+++++++
T Consensus 68 ~~~~---l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~-~~-~~~~d~~~l~~~i~~~~~~~~~~~~~v~ 142 (353)
T PLN02721 68 NLIS---VLVHCDVRGSEVILGDNSHIHLYENGGISTLGGVHPRTVKN-NE-DGTMDLDAIEAAIRPKGDDHFPTTRLIC 142 (353)
T ss_pred HHHH---HHHHccCCCCeEEEcCccceehhcccchhhhcCceeEecCC-Cc-CCCcCHHHHHHHHHhccCCCCCcceEEE
Confidence 5443 333444 79999999999753333 56778999999987 43 4678999999988532 14677777
Q ss_pred eCC-CCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCC--CCCCCchHHHHHHHHhcCcEEEEecCcccccccCc
Q psy14428 316 QTS-SHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTS--GDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGE 392 (583)
Q Consensus 316 i~~-p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~--~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~Gl 392 (583)
+++ ||||||.+++.+++++|+++|+++|++||+|++|..... .+ . +...+....+ .++.|+||.++.
T Consensus 143 l~~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~~~~~~~~~--~---~~~~~~~~~d--~~~~s~sK~l~~--- 212 (353)
T PLN02721 143 LENTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARIFNASVALG--V---PVHRLVKAAD--SVSVCLSKGLGA--- 212 (353)
T ss_pred EeccccccCCccccHHHHHHHHHHHHHcCCEEEEEchhhhcchhhhC--C---CHHHHhhhCC--EEEEecccccCC---
Confidence 755 688999999999999999999999999999999753221 11 1 1112222223 334479998863
Q ss_pred cceEEEEEcCCchhHHHHHHHHHHHHhcc
Q psy14428 393 RVGTFSVLTPTSDETERIMSQLKILIRGF 421 (583)
Q Consensus 393 RiG~lv~~~p~~~~~~~li~~l~~~~~~~ 421 (583)
++||++.. + +++++.+...+...
T Consensus 213 ~~G~~~~~-~-----~~~~~~~~~~~~~~ 235 (353)
T PLN02721 213 PVGSVIVG-S-----KSFIRKAKRLRKTL 235 (353)
T ss_pred ceeeEEec-C-----HHHHHhHHHHHHhc
Confidence 47874431 4 47888877665443
|
|
| >TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-19 Score=193.06 Aligned_cols=217 Identities=11% Similarity=0.058 Sum_probs=158.7
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCC---CC----HHHHHHHHHHHhCCCCCCCCCCCeE
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIG---GD----AKFCKLAAQLAYGEDFPAFKDNRLA 233 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~---G~----~~Lr~aia~~~~~~~g~~~~~~~I~ 233 (583)
.+.+.|+|+.+++. +.+ +++.+.++..+...+. ..+|+++. |. .+||+++|++++. ++++
T Consensus 36 ~g~~~i~~~~~~~l---g~~-~~~~v~~~~~~~~~~~-~~~~~~s~~~~G~~~~~~~le~~ia~~~g~--------~~~i 102 (393)
T TIGR01822 36 DGREVLNFCANNYL---GLS-SHPDLIQAAKDALDEH-GFGMSSVRFICGTQDIHKELEAKIAAFLGT--------EDTI 102 (393)
T ss_pred CCceEEEeeCCCcc---ccC-CCHHHHHHHHHHHHHh-CCCCCCcCcccCChHHHHHHHHHHHHHhCC--------CcEE
Confidence 34578999999763 222 3467777776666542 24677777 86 8999999999974 4677
Q ss_pred EEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcC---CCC
Q psy14428 234 IVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAM---PER 310 (583)
Q Consensus 234 i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~---~~~ 310 (583)
+ ++|+++|+..+ +..++.+||.|++++|+|+.+...++..+.+.+.++ ..|++.+++.+... ..+
T Consensus 103 i--~~~~~~a~~~~---~~~l~~~gd~vi~~~~~~~s~~~~~~~~~~~~~~~~-------~~d~~~l~~~i~~~~~~~~~ 170 (393)
T TIGR01822 103 L--YASCFDANGGL---FETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYA-------NNDMADLEAQLKEARAAGAR 170 (393)
T ss_pred E--ECchHHHHHHH---HHHhCCCCCEEEEeccccHHHHHHHHhcCCceEEeC-------CCCHHHHHHHHHhhhhcCCC
Confidence 7 88889998874 444567799999999999999998888887765432 34888898888643 127
Q ss_pred cEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHh-cCcEEEEecCcccccc
Q psy14428 311 SILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKE-VGQLCLAQSFSKNMGL 389 (583)
Q Consensus 311 ~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~-~~~vi~i~S~SK~~~l 389 (583)
++++++++++||||.+.+ +++|+++|++||++||+||+|..-..+. ...+.....+. .+..++++||||.+
T Consensus 171 ~~~v~~~~v~~~tG~~~~---l~~i~~la~~~~~~li~De~~~~g~~~~---~~~~~~~~~~~~~~~di~~~s~sK~l-- 242 (393)
T TIGR01822 171 HRLIATDGVFSMDGVIAP---LDEICDLADKYDALVMVDECHATGFLGP---TGRGSHELCGVMGRVDIITGTLGKAL-- 242 (393)
T ss_pred ceEEEEeCCccCCCCcCC---HHHHHHHHHHcCCEEEEECCccccCcCC---CCCchHHhcCCCCCCeEEEEEChHHh--
Confidence 888999999999999876 6777889999999999999995322221 11111122221 24569999999986
Q ss_pred cCccceEEEEEcCCchhHHHHHHHHHHH
Q psy14428 390 YGERVGTFSVLTPTSDETERIMSQLKIL 417 (583)
Q Consensus 390 ~GlRiG~lv~~~p~~~~~~~li~~l~~~ 417 (583)
+|+|+||+++ + +++++.+...
T Consensus 243 ~g~r~G~~~~--~-----~~~~~~l~~~ 263 (393)
T TIGR01822 243 GGASGGFTTA--R-----KEVVELLRQR 263 (393)
T ss_pred hCCCcEEEEe--C-----HHHHHHHHHh
Confidence 5789999998 7 5788888764
|
This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function. |
| >KOG1412|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.3e-22 Score=192.20 Aligned_cols=76 Identities=34% Similarity=0.702 Sum_probs=72.7
Q ss_pred CcceecccchhHHHHHHHHHHhhcCCCeEEecCCCCcCchhhhhhcCCC-ceeeeeccCCCCcccchhhhHHHHHhhh
Q psy14428 1 LAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRL-NVGAYRYFDNKTNGLDFAGMMEDIKLAI 77 (583)
Q Consensus 1 ~~~~q~~~~tg~~~~~~~~~~~~~~~~~~~~~~~p~w~n~~~~~~~~~~-~~~~y~~~~~~~~~~d~~~~~~~~~~a~ 77 (583)
+.+|||||||||||+||.||++||+. ++||+|+|||.||+.+|+++|+ .|.+|+|||.+++++|+++|+.||+.||
T Consensus 100 v~~vQslsGTGAl~~~A~Fl~~~~~~-~~VY~SnPTW~nH~~if~~aGf~tv~~Y~yWd~~~k~~d~e~~Lsdl~~AP 176 (410)
T KOG1412|consen 100 VFGVQSLSGTGALRIAADFLATFYNK-NTVYVSNPTWENHHAIFEKAGFTTVATYPYWDAENKCVDLEGFLSDLESAP 176 (410)
T ss_pred ccceeeccccchhhhhHHHHHHhccc-ceeEecCCchhHHHHHHHHcCCceeeeeeeecCCCceecHHHHHHHHhhCC
Confidence 47899999999999999999999986 7899999999999999999995 7999999999999999999999999997
|
|
| >PLN02242 methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.85 E-value=1e-19 Score=193.62 Aligned_cols=195 Identities=13% Similarity=0.105 Sum_probs=151.0
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHH-----hhc
Q psy14428 204 NIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFC-----TDS 278 (583)
Q Consensus 204 ~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~-----~~~ 278 (583)
+..-..+|++.+|++.+. +.+++ ++||++|+.++ +..++.+||.|+++.|.|+.+...+ +..
T Consensus 74 ~~Pt~~~LE~~lA~l~g~--------~~~l~--~~sG~~Ai~~a---l~al~~~GD~Vl~~~~~Y~~~~~~~~~~~~~~~ 140 (418)
T PLN02242 74 FNPTVLNLGRQMAALEGT--------EAAYC--TASGMSAISSV---LLQLCSSGGHVVASNTLYGGTHALLAHFLPRKC 140 (418)
T ss_pred CChhHHHHHHHHHHHhCC--------CeEEE--EccHHHHHHHH---HHHHhCCCCEEEEcCCcHHHHHHHHHHhhhhcc
Confidence 355578899999998864 35667 99999999985 4445667999999999999887765 346
Q ss_pred CCeEEEEecccCCCCCCChhhHHHHHHcCCC-CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCC
Q psy14428 279 RLNVGAYRYFDNKTNGLDFAGMMEDIKAMPE-RSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTS 357 (583)
Q Consensus 279 G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~-~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~ 357 (583)
|++++.++. .|++.+++.+ .+ +++++++++|+||||.+.+ +++|+++|++++++||+|++|.++.+
T Consensus 141 G~~~~~~d~-------~d~e~l~~~i---~~~~tklV~lesp~NPtG~v~d---l~~I~~la~~~gi~livDea~~~~~~ 207 (418)
T PLN02242 141 NITTTFVDI-------TDLEAVKKAV---VPGKTKVLYFESISNPTLTVAD---IPELARIAHEKGVTVVVDNTFAPMVL 207 (418)
T ss_pred CceEEEcCC-------CCHHHHHHhc---CcCCCEEEEEecCCCCCCcccC---HHHHHHHHHHhCCEEEEECCCCccCC
Confidence 777766654 1778887777 44 5899999999999999885 67788889999999999999987765
Q ss_pred CCCCCchHHHHHHHHhcCcEEEEecCcccccccCccc-eEEEEEcCCchhHHHHHHHHHHHHh--ccccCCChHHHHHHH
Q psy14428 358 GDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERV-GTFSVLTPTSDETERIMSQLKILIR--GFYSNPPIHGARIVT 434 (583)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRi-G~lv~~~p~~~~~~~li~~l~~~~~--~~~~~~s~~~q~~~~ 434 (583)
+. . ..+..|++.||||.++.+|+|+ ||+++ + +++++++..... ....+++...|.++.
T Consensus 208 ~~-------~-----~~g~divv~S~SK~l~g~g~~~gG~iv~--~-----~~li~~l~~~~~~~~~~~g~~~~~~~A~l 268 (418)
T PLN02242 208 SP-------A-----RLGADVVVHSISKFISGGADIIAGAVCG--P-----AELVNSMMDLHHGALMLLGPTMNPKVAFE 268 (418)
T ss_pred CH-------H-----HcCCcEEEEeCccccCCCCCceEEEEEc--C-----HHHHHHHHHHhhhhhhccCCCCCHHHHHH
Confidence 31 1 1246799999999999899885 88888 6 578888887655 245677777888888
Q ss_pred HHhCChhhh
Q psy14428 435 EILSDPKLK 443 (583)
Q Consensus 435 ~~l~~~~~~ 443 (583)
.+.....+.
T Consensus 269 ~~~~l~tl~ 277 (418)
T PLN02242 269 LSERLPHLS 277 (418)
T ss_pred HHcCCCcHH
Confidence 777654433
|
|
| >PRK05958 8-amino-7-oxononanoate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.3e-19 Score=185.50 Aligned_cols=280 Identities=13% Similarity=0.058 Sum_probs=171.9
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhcc-C-CCCCCCCCCCC----HHHHHHHHHHHhCCCCCCCCCCCeEE
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEK-N-LDHEYANIGGD----AKFCKLAAQLAYGEDFPAFKDNRLAI 234 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~-~-~~~~Y~~~~G~----~~Lr~aia~~~~~~~g~~~~~~~I~i 234 (583)
.+.+.|||+.+.+ .|. .+++.+.+++.+.... . ....|....|. .++++++++++ + .++.|++
T Consensus 37 ~g~~~id~~~~~~---~g~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~----~---~~~~i~~ 105 (385)
T PRK05958 37 DGRRMLNFASNDY---LGL-ARHPRLIAAAQQAARRYGAGSGGSRLVTGNSPAHEALEEELAEWF----G---AERALLF 105 (385)
T ss_pred CCceEEEeeCCCc---ccC-CCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHh----C---CCcEEEE
Confidence 4667889998753 121 1456788877766643 1 01123334454 45555555555 3 2445555
Q ss_pred EecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEE
Q psy14428 235 VQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILF 314 (583)
Q Consensus 235 ~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i 314 (583)
++| ++++..+ +..+..+||.|++++|+|+.+...++..|.+++.++. .|++.+++.++...+.+.++
T Consensus 106 --~~g-~~~~~~~---l~~~~~~gd~V~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~i~~~~~~~~lv 172 (385)
T PRK05958 106 --SSG-YAANLAV---LTALAGKGDLIVSDKLNHASLIDGARLSRARVRRYPH-------NDVDALEALLAKWRAGRALI 172 (385)
T ss_pred --CcH-HHHHHHH---HHHhCCCCCEEEEeCccCHHHHHHHHhcCCceEEeCC-------CCHHHHHHHHHhccCCCeEE
Confidence 554 4555442 3456778999999999999999999999999888765 17788888875433346788
Q ss_pred EeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccc
Q psy14428 315 LQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERV 394 (583)
Q Consensus 315 ~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRi 394 (583)
++++++||||...+ +++|+++|+++|++||+||+|....++........... .+..+++|++.||||.++++|
T Consensus 173 i~~~~~~~~G~~~~---l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~~~~~~-~~~~~~~i~~~s~sK~~~~~G--- 245 (385)
T PRK05958 173 VTESVFSMDGDLAP---LAELVALARRHGAWLLVDEAHGTGVLGPQGRGLAAEAG-LAGEPDVILVGTLGKALGSSG--- 245 (385)
T ss_pred EEEecccCCCCcCC---HHHHHHHHHHhCCEEEEECcccccccCCCCCchHHhhC-CCCCCceEEEEechhhcccCC---
Confidence 88899999997765 67788899999999999999977655421011111111 123468999999999998777
Q ss_pred eEEEEEcCCchhHHHHHHHHHHHHhcc-c-cCCChHHHHHHHHHhCChh-hhhhhhhHHHHHHHHHHHHhh-ccCCCccc
Q psy14428 395 GTFSVLTPTSDETERIMSQLKILIRGF-Y-SNPPIHGARIVTEILSDPK-LKAQCDETERIMSQLKILIRG-FYSNPPIH 470 (583)
Q Consensus 395 G~lv~~~p~~~~~~~li~~l~~~~~~~-~-~~~s~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~l~~~~r~-~~~~~p~~ 470 (583)
||+++ + +++++.+.+..... . .+.+.+.+.++...++... .....++..+..+.+.+.++. .+...+..
T Consensus 246 g~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 318 (385)
T PRK05958 246 AAVLG--S-----ETLIDYLINRARPFIFTTALPPAQAAAARAALRILRREPERRERLAALIARLRAGLRALGFQLMDSQ 318 (385)
T ss_pred cEEEc--C-----HHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcCCCcCCCC
Confidence 99988 6 57787776543222 2 2344444444544443110 111222222222222222322 24444556
Q ss_pred hhhHHHHh
Q psy14428 471 GARIVTEI 478 (583)
Q Consensus 471 g~~i~~~~ 478 (583)
|.++++.+
T Consensus 319 ~~~~~~~~ 326 (385)
T PRK05958 319 SAIQPLIV 326 (385)
T ss_pred CCEEEEEe
Confidence 77666654
|
|
| >PRK06234 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=4e-19 Score=188.66 Aligned_cols=194 Identities=14% Similarity=0.119 Sum_probs=148.4
Q ss_pred CC--CCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHH----H
Q psy14428 202 YA--NIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRF----C 275 (583)
Q Consensus 202 Y~--~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~----~ 275 (583)
|. +..+..+|++++|++++. ++.++ ++||++|+..+ +..++++||+|++++|.|..+... +
T Consensus 58 Y~r~~~p~~~~Le~~iA~~~g~--------~~~l~--~~sG~~Ai~~a---l~~ll~~Gd~Vl~~~~~y~~~~~~~~~~~ 124 (400)
T PRK06234 58 YSRLGNPTSTEVENKLALLEGG--------EAAVV--AASGMGAISSS---LWSALKAGDHVVASDTLYGCTFALLNHGL 124 (400)
T ss_pred ccCCCCccHHHHHHHHHHHhCC--------CcEEE--EcCHHHHHHHH---HHHHhCCCCEEEEecCccchHHHHHHHHH
Confidence 55 778899999999999863 35677 88888998774 344566799999999988776544 4
Q ss_pred hhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhc--CeEEEEeccCC
Q psy14428 276 TDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQR--HLYPFFDMAYL 353 (583)
Q Consensus 276 ~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~--~i~iI~De~Y~ 353 (583)
+..|++++.++.. |++.+++.+ .++++++++++|+||||.+.+ +++|.++|+++ +++||+|++|.
T Consensus 125 ~~~G~~v~~vd~~-------d~e~l~~~i---~~~tklI~iesP~NPtG~v~d---l~~I~~la~~~~~~i~livDea~~ 191 (400)
T PRK06234 125 TRYGVEVTFVDTS-------NLEEVRNAL---KANTKVVYLETPANPTLKVTD---IKAISNIAHENNKECLVFVDNTFC 191 (400)
T ss_pred hhCCeEEEEECCC-------CHHHHHHHh---ccCCeEEEEECCCCCCCCcCC---HHHHHHHHHhcCCCCEEEEECCCC
Confidence 6689999888651 678888877 567899999999999999988 56667778886 99999999998
Q ss_pred CCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccc-eEEEEEcCCchhHHHHHHHHHHH--HhccccCCChHHH
Q psy14428 354 GLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERV-GTFSVLTPTSDETERIMSQLKIL--IRGFYSNPPIHGA 430 (583)
Q Consensus 354 ~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRi-G~lv~~~p~~~~~~~li~~l~~~--~~~~~~~~s~~~q 430 (583)
...+.. ++ + .+..|++.|+||.++.+|+|+ ||+++ + ++++++++.. ......+.+++..
T Consensus 192 ~~~~~~------~l----~-~g~Divv~S~sK~l~g~g~~~gG~v~~--~-----~~~~~~l~~~~~~~~~g~~l~p~~a 253 (400)
T PRK06234 192 TPYIQR------PL----Q-LGADVVVHSATKYLNGHGDVIAGFVVG--K-----EEFINQVKLFGIKDMTGSVIGPFEA 253 (400)
T ss_pred chhcCC------ch----h-hCCcEEEeeccccccCCCCceeEEEEe--c-----HHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 765532 12 1 145699999999999899886 99988 6 4688877653 2233556677777
Q ss_pred HHHHHHhCC
Q psy14428 431 RIVTEILSD 439 (583)
Q Consensus 431 ~~~~~~l~~ 439 (583)
+.+..-++.
T Consensus 254 ~l~~~~l~t 262 (400)
T PRK06234 254 FLIIRGMKT 262 (400)
T ss_pred HHHHhccCc
Confidence 777666664
|
|
| >PRK03244 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.5e-19 Score=186.48 Aligned_cols=279 Identities=12% Similarity=0.078 Sum_probs=181.7
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccC--CCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecC
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKN--LDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGI 238 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~--~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~ 238 (583)
.+...+|+..|.+....|. ..+.+.+++.+.+++. ....|.+..+ .+|.+.++++ .+.. .+++|++ ++
T Consensus 41 dg~~~lD~~s~~~~~~lG~--~~p~v~~ai~~~~~~~~~~~~~~~~~~~-~~la~~l~~~----~~~~-~~~~v~~--~~ 110 (398)
T PRK03244 41 DGKEYLDLLGGIAVNALGH--AHPAVVEAVTRQLATLGHVSNLFATEPQ-IALAERLVEL----LGAP-EGGRVFF--CN 110 (398)
T ss_pred CCCEEEECCcCHhhccCCC--CCHHHHHHHHHHHHhccCccCccCCHHH-HHHHHHHHHh----CCCC-CCCEEEE--eC
Confidence 3556789998887766664 2477888877776541 1234654333 3455555444 3322 4579999 99
Q ss_pred CchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhc-CC------------eEEEEecccCCCCCCChhhHHHHHH
Q psy14428 239 SGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDS-RL------------NVGAYRYFDNKTNGLDFAGMMEDIK 305 (583)
Q Consensus 239 G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~-G~------------~~~~v~~~d~~~~g~d~~~l~~~l~ 305 (583)
|+++|+..+..++.. ...+.|+..+++|..+....... |. ++..+|. .|++.+++.+
T Consensus 111 sgsea~~~al~~~~~--~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~~- 180 (398)
T PRK03244 111 SGAEANEAAFKLARL--TGRTKIVAAEGGFHGRTMGALALTGQPAKRAPFEPLPGGVEHVPY-------GDVDALAAAV- 180 (398)
T ss_pred chHHHHHHHHHHHHH--HCCCeEEEECCCcCCccHHHHhccCCcccccCCCCCCCCceEeCC-------CCHHHHHHhh-
Confidence 999999997554433 22357777788998774433322 21 2222322 1677787766
Q ss_pred cCCCCcEEEEeCCCCCCCCCCCCHHH-HHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCc
Q psy14428 306 AMPERSILFLQTSSHNPTGVDLSEDQ-WRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFS 384 (583)
Q Consensus 306 ~~~~~~~~i~i~~p~NPTG~~~s~~~-~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~S 384 (583)
.++++++++.+++||||.++++++ +++|.++|+++|+++|+||+|.+|...+ ....+.. .+..+++ .+||
T Consensus 181 --~~~~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g---~~~~~~~-~~~~pDi---~t~s 251 (398)
T PRK03244 181 --DDDTAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTG---AWFAHQH-DGVTPDV---VTLA 251 (398)
T ss_pred --cCCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCcccc---hHHhhhh-hCCCCCE---EEEc
Confidence 357788888999999999997766 9999999999999999999999876654 1111111 1222333 4889
Q ss_pred ccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhC---ChhhhhhhhhHHHHHHHHHHHHh
Q psy14428 385 KNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILS---DPKLKAQCDETERIMSQLKILIR 461 (583)
Q Consensus 385 K~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~l~~~~r 461 (583)
|.++ +|+|+||+++ + +++++.+........++.++++|.++...++ ++.+.++..++... +++.++
T Consensus 252 K~l~-~G~~ig~~~~--~-----~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~---l~~~L~ 320 (398)
T PRK03244 252 KGLG-GGLPIGACLA--F-----GPAADLLTPGLHGSTFGGNPVACAAALAVLDTIASEGLLENAERLGEQ---LRAGIE 320 (398)
T ss_pred hhhh-CCcccEEEEE--c-----HHHHhhccCCCCcCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHH---HHHHHH
Confidence 9999 9999999999 7 4788887655455566889999999998865 44444444443322 222222
Q ss_pred hc-c---CCCccchhhHHHHhc
Q psy14428 462 GF-Y---SNPPIHGARIVTEIL 479 (583)
Q Consensus 462 ~~-~---~~~p~~g~~i~~~~l 479 (583)
.. + ......|.+++..+.
T Consensus 321 ~~~~~~~~~v~g~g~~~~i~~~ 342 (398)
T PRK03244 321 ALGHPLVDHVRGRGLLLGIVLT 342 (398)
T ss_pred hcCCCceeeEeeccEEEEEEEe
Confidence 21 2 123345777776653
|
|
| >cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT) | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.9e-18 Score=184.33 Aligned_cols=284 Identities=14% Similarity=0.115 Sum_probs=185.9
Q ss_pred CCccccCCccccCCCCCCCCChHHHHHHHHHhcc------CCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEe
Q psy14428 163 PKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEK------NLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQ 236 (583)
Q Consensus 163 ~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~------~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~ 236 (583)
...++|..+... +++.+++++...+.. .....|....+.+.+++.+++++.+.+|.+ ..+|++
T Consensus 19 ~~~~~~~~~~~~-------~~~~v~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~--~~~v~~-- 87 (402)
T cd00378 19 RETLELIASENF-------TSPAVMEAMGSDLTNKYAEGYPGKRYYGGCEYVDEIEDLAIERAKKLFGAE--YANVQP-- 87 (402)
T ss_pred HhCeeeeccCCc-------CCHHHHHHhcccccccccCCCCCCcccCCchHHHHHHHHHHHHHHHHhCCC--ceeeec--
Confidence 456777665542 457888887654321 113346667777888887776665555543 345555
Q ss_pred cCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHH-----HhhcCCeEEEEecccCC--CCCCChhhHHHHHHcCCC
Q psy14428 237 GISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRF-----CTDSRLNVGAYRYFDNK--TNGLDFAGMMEDIKAMPE 309 (583)
Q Consensus 237 t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~-----~~~~G~~~~~v~~~d~~--~~g~d~~~l~~~l~~~~~ 309 (583)
++ |++|+.++ +..+.++||+|++++|+|+.+... ++..|.+++.+++ +.+ ++.+|++.+++.+.. .
T Consensus 88 ~s-gt~a~~~~---l~~l~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~id~~~l~~~i~~--~ 160 (402)
T cd00378 88 HS-GSQANLAV---YFALLEPGDTIMGLDLSHGGHLTHGSFTKVSASGKLFESVPY-GVDPETGLIDYDALEKMALE--F 160 (402)
T ss_pred CC-cHHHHHHH---HHHhcCCCCEEEEecCccCccccccccccccccceeEEEecC-CcCcccCCcCHHHHHHHHHh--C
Confidence 54 56888874 455667899999999999876543 6667887777776 333 588999999988842 3
Q ss_pred CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccC-CCCCCCCCCCchHHHHHHHHhcCcEEEEecCccccc
Q psy14428 310 RSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAY-LGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMG 388 (583)
Q Consensus 310 ~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y-~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~ 388 (583)
+++++++++|+||+. . ++++|+++|+++|++||+|++| .++.+.+. ...++. ... ++++|+||.+
T Consensus 161 ~~~~v~~~~~~~~~~--~---~~~~I~~l~~~~~~~li~D~a~~~g~~~~g~--~~~~~~-----~~d-v~~~s~sK~l- 226 (402)
T cd00378 161 KPKLIVAGASAYPRP--I---DFKRFREIADEVGAYLLVDMAHVAGLVAGGV--FPNPLP-----GAD-VVTTTTHKTL- 226 (402)
T ss_pred CCCEEEecCcccCCC--c---CHHHHHHHHHhcCCEEEEEccchhhhhhccc--CCCccc-----CCc-EEEeccccCC-
Confidence 577888899998853 2 4778899999999999999994 66655431 111111 123 6899999977
Q ss_pred ccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHH-HHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCC
Q psy14428 389 LYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIV-TEILSDPKLKAQCDETERIMSQLKILIRGFYSNP 467 (583)
Q Consensus 389 l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~-~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~ 467 (583)
+|+|.||+++ ++ +++++++.+.......+.+...+.++ ...+..
T Consensus 227 -~G~~gg~i~~--~~----~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~---------------------------- 271 (402)
T cd00378 227 -RGPRGGLILT--RK----GELAKKINSAVFPGLQGGPHLHVIAAKAVALKE---------------------------- 271 (402)
T ss_pred -CCCCceEEEe--cc----HHHHHHHHHHhCccccCCchHHHHHHHHHHHHH----------------------------
Confidence 8999999999 64 36888877654433333332222111 111100
Q ss_pred ccchhhHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc-cccccceeecCCCh
Q psy14428 468 PIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHI-TNQKGMFCYTGLSA 536 (583)
Q Consensus 468 p~~g~~i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~-~~~~g~f~~~~l~~ 536 (583)
.......+.++++.++++.+.+.|++.+ +... .++++++.|..++.
T Consensus 272 -------------------~~~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~v~v~~~~ 318 (402)
T cd00378 272 -------------------ALEPEFKAYAKQVVENAKALAEALKERG----FKVVSGGTDNHLVLVDLRP 318 (402)
T ss_pred -------------------HhhHHHHHHHHHHHHHHHHHHHHHHhCC----CeEeecCCCCeEEEEeCCc
Confidence 0001234455667788888999988764 3333 35678999988864
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites. |
| >PLN02822 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-18 Score=188.89 Aligned_cols=283 Identities=11% Similarity=0.053 Sum_probs=193.4
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhcc-CC-----CCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEE
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEK-NL-----DHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAI 234 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~-~~-----~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i 234 (583)
.+.+.+||+.+.+..- . .++.+.++..+.+++ +. ...|.+..+..+|+++||+++. .++.|++
T Consensus 107 ~G~~~id~~s~~~lgl---~-~~~~i~ea~~~al~~~G~g~~g~r~~yg~~~~~~~Lee~La~~~~-------~~~~i~~ 175 (481)
T PLN02822 107 NGKDVVNFASANYLGL---I-GNEKIKESCTSALEKYGVGSCGPRGFYGTIDVHLDCETKIAKFLG-------TPDSILY 175 (481)
T ss_pred CCceEEEeECCCcCCC---C-CCHHHHHHHHHHHHHhCCCCcccCccccCHHHHHHHHHHHHHHhC-------CCCEEEE
Confidence 3457799998876422 1 356778777777755 21 1246777779999999999996 2478888
Q ss_pred EecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHc---C---C
Q psy14428 235 VQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKA---M---P 308 (583)
Q Consensus 235 ~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~---~---~ 308 (583)
++|++ ++.. ++..++.+||.|++....+..+...++..|.+++.++.. |.+.++..+++ . .
T Consensus 176 --s~G~~-a~~s---ai~a~~~~gd~Ii~d~~~H~s~~~~~~ls~~~~~~~~~n-------d~~~l~~~l~~~~~~~~~~ 242 (481)
T PLN02822 176 --SYGLS-TIFS---VIPAFCKKGDIIVADEGVHWGIQNGLYLSRSTIVYFKHN-------DMESLRNTLEKLTAENKRK 242 (481)
T ss_pred --CCHHH-HHHH---HHHHhCCCCCEEEEeCCccHHHHHHHHHcCCeEEEECCC-------CHHHHHHHHHHHhhhhccc
Confidence 88877 4443 455677889999988777777777788889999988763 33344443332 1 1
Q ss_pred CCc-EEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHH--hcCcEEEEecCcc
Q psy14428 309 ERS-ILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAK--EVGQLCLAQSFSK 385 (583)
Q Consensus 309 ~~~-~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~--~~~~vi~i~S~SK 385 (583)
+++ +++++..++|+||.+.+ +++|+++|++|++++|.||+|....++..... +....+ ..+..|+++||||
T Consensus 243 ~~~~~~Ivve~i~~~~G~i~~---L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G~G---~~e~~~v~~~~~dii~~s~sK 316 (481)
T PLN02822 243 KKLRRYIVVEAIYQNSGQIAP---LDEIVRLKEKYRFRVLLDESNSFGVLGKSGRG---LSEHFGVPIEKIDIITAAMGH 316 (481)
T ss_pred CCCcEEEEEecCCCCCCCccC---HHHHHHHHHHcCCEEEEECCccccccCCCCCC---hHHHcCCCCCCCeEEEecchh
Confidence 233 78999999999999999 67889999999999999999997766531011 111111 1245689999999
Q ss_pred cccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCC--ChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhc
Q psy14428 386 NMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNP--PIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGF 463 (583)
Q Consensus 386 ~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~--s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~ 463 (583)
.+|++| ||+++ + +++++.++.......++. |+..|.++...++.-
T Consensus 317 alg~~G---G~i~g--~-----~~ii~~~~~~~~~~~fsa~lPp~~~~Aa~~aL~~l----------------------- 363 (481)
T PLN02822 317 ALATEG---GFCTG--S-----ARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVL----------------------- 363 (481)
T ss_pred hhhhCC---eEEEc--C-----HHHHHHHHhcCCceeeccccCHHHHHHHHHHHHHH-----------------------
Confidence 999999 99998 6 578888876544444443 355666665555210
Q ss_pred cCCCccchhhHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCC
Q psy14428 464 YSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLS 535 (583)
Q Consensus 464 ~~~~p~~g~~i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~ 535 (583)
+...+++++++++++.|.+.|++.. | +....+.++.+.+..++
T Consensus 364 --------------------------~~~~~~~~~l~~~~~~l~~~L~~~~--g-~~~~~~~~spi~~l~l~ 406 (481)
T PLN02822 364 --------------------------EDNPSVLAKLKENIALLHKGLSDIP--G-LSIGSNTLSPIVFLHLE 406 (481)
T ss_pred --------------------------HhCHHHHHHHHHHHHHHHHHHHhcC--C-cccCCCCCCCEEEEEeC
Confidence 0012344566778888888887742 2 44555667788777664
|
|
| >PRK08247 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.2e-18 Score=179.92 Aligned_cols=191 Identities=12% Similarity=0.105 Sum_probs=141.2
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhh----HHHHhhcC
Q psy14428 204 NIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGH----VRFCTDSR 279 (583)
Q Consensus 204 ~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~----~~~~~~~G 279 (583)
+..-..+|++++|++.+.. ..++ ++||++++.++ +. +..+||+|++++|+|+.. ...++..|
T Consensus 50 ~~pt~~~le~~la~l~g~~--------~~~~--~~sG~~ai~~~---~~-ll~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G 115 (366)
T PRK08247 50 GNPTRGVLEQAIADLEGGD--------QGFA--CSSGMAAIQLV---MS-LFRSGDELIVSSDLYGGTYRLFEEHWKKWN 115 (366)
T ss_pred CCchHHHHHHHHHHHhCCC--------cEEE--EcCHHHHHHHH---HH-HhCCCCEEEEecCCcCcHHHHHHHHhhccC
Confidence 3345689999999998642 2355 77888898864 33 445699999999999874 34455689
Q ss_pred CeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCC
Q psy14428 280 LNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGD 359 (583)
Q Consensus 280 ~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~ 359 (583)
++++.++. .|++.+++.+ .++++++++++|+|||| +..++++|+++|++++++||+|++|..-....
T Consensus 116 ~~v~~vd~-------~d~~~l~~~i---~~~tklv~le~P~NP~~---~~~dl~~I~~la~~~g~~lIvD~t~~~~~~~~ 182 (366)
T PRK08247 116 VRFVYVNT-------ASLKAIEQAI---TPNTKAIFIETPTNPLM---QETDIAAIAKIAKKHGLLLIVDNTFYTPVLQR 182 (366)
T ss_pred ceEEEECC-------CCHHHHHHhc---ccCceEEEEECCCCCCC---cHHHHHHHHHHHHHcCCEEEEECCCccccccC
Confidence 99888765 1778888777 56789999999999975 67889999999999999999999995332221
Q ss_pred CCCchHHHHHHHHhcCcEEEEecCcccccc-cCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhC
Q psy14428 360 FDKDAFSLRYFAKEVGQLCLAQSFSKNMGL-YGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILS 438 (583)
Q Consensus 360 ~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l-~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~ 438 (583)
++ ..+..|++.|+||.++- ++++.||+++ ++ +++++++...+.....+.+.+.|+++...++
T Consensus 183 ------p~-----~~g~di~i~S~sK~~~g~~d~~~G~iv~--~~----~~l~~~~~~~~~~~g~~~s~~~a~l~~~~l~ 245 (366)
T PRK08247 183 ------PL-----EEGADIVIHSATKYLGGHNDVLAGLVVA--KG----QELCERLAYYQNAAGAVLSPFDSWLLIRGMK 245 (366)
T ss_pred ------ch-----hcCCcEEEeecceeccCCCceeeeEEec--Ch----HHHHHHHHHHHHhcCCCCChHHHHHHHhccC
Confidence 11 12567999999999964 3579999998 64 3677877776666555666666666555443
|
|
| >TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-17 Score=176.55 Aligned_cols=178 Identities=15% Similarity=0.039 Sum_probs=136.0
Q ss_pred CHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEec
Q psy14428 208 DAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRY 287 (583)
Q Consensus 208 ~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~ 287 (583)
...+++++|++++. +.+++ ++|+++++..+ +..+.++||.|+++.+.+......++..|++++.+|.
T Consensus 53 ~~~~~e~lA~~~g~--------~~~~i--~~g~~~a~~~~---~~~l~~~gd~Vl~~~~~h~s~~~~~~~~g~~~~~~~~ 119 (370)
T TIGR02539 53 IHDFLEDLAEFLGM--------DEARV--THGAREGKFAV---MHALCKEGDWVVLDGLAHYTSYVAAERAGLNVKEVPH 119 (370)
T ss_pred HHHHHHHHHHHhCC--------CceEE--ECChHHHHHHH---HHHhhCCCCEEEECCcccHHHHHHHHHcCCEEEEEec
Confidence 46788889998863 35677 89999999885 4456677999999888844444677889999999998
Q ss_pred ccCCCCCCChhhHHHHHHcCC----CCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCc
Q psy14428 288 FDNKTNGLDFAGMMEDIKAMP----ERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKD 363 (583)
Q Consensus 288 ~d~~~~g~d~~~l~~~l~~~~----~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~ 363 (583)
.++.++.+|++.+++.+.+.. ++++++++++|+||||...+ +++|+++|+++++++|+||+|.....+.
T Consensus 120 ~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~---l~~i~~la~~~~~~livDea~~~g~~~~---- 192 (370)
T TIGR02539 120 TGHPEYKVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPD---AGKVAKVCREKGVPLLLNCAYTVGRMPV---- 192 (370)
T ss_pred CCcccCCcCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCccccC---HHHHHHHHHHcCCeEEEECccccCCcCC----
Confidence 322357889999999885421 36789999999999998776 5566788999999999999998753221
Q ss_pred hHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHh
Q psy14428 364 AFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIR 419 (583)
Q Consensus 364 ~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~ 419 (583)
.... .+..++++||||.++ +|.|+||+++ + +++++.+.....
T Consensus 193 --~~~~----~~~di~v~s~sK~~~-~~g~~G~l~~--~-----~~~i~~l~~~~~ 234 (370)
T TIGR02539 193 --SAKE----IGADFIVGSGHKSMA-ASGPCGVLGM--S-----EEWEDIVLRKSR 234 (370)
T ss_pred --CHHH----cCCCEEEeeCccccc-CCCCEEEEEE--C-----HHHHhhhccccc
Confidence 1111 134467799999998 6889999999 6 578888887654
|
Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA. |
| >cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.7e-18 Score=176.05 Aligned_cols=198 Identities=14% Similarity=0.058 Sum_probs=135.5
Q ss_pred hHHHHHHHHHhccCC--CCCCCC----CCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCC
Q psy14428 184 PSVKEAERRIYEKNL--DHEYAN----IGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPG 257 (583)
Q Consensus 184 ~~v~~a~~~~~~~~~--~~~Y~~----~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~ 257 (583)
+.+.+++++.+++.. ...|.. ..-..+++++++++++. ++.| + ++++++++..+ +..++++
T Consensus 18 ~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~-------~~~i-v--~~sg~~a~~~~---~~~~~~~ 84 (349)
T cd06454 18 PEVIEAAKEALDKYGVGAGGSRLISGTSDLHEELEEELAEFHGK-------EAAL-V--FSSGYAANDGV---LSTLAGK 84 (349)
T ss_pred HHHHHHHHHHHHHhCCCCCCcCeecCCchHHHHHHHHHHHHhCC-------CCEE-E--eccHHHHHHHH---HHHhcCC
Confidence 678888877775421 112222 22336677777776642 2344 4 44456676653 3455677
Q ss_pred CCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcC--CCCcEEEEeCCCCCCCCCCCCHHHHHHH
Q psy14428 258 VKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAM--PERSILFLQTSSHNPTGVDLSEDQWRQL 335 (583)
Q Consensus 258 gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~--~~~~~~i~i~~p~NPTG~~~s~~~~~~l 335 (583)
||.|++++|+|+.+...++..|++++.++. +|++.+++.+.+. ..+++++++++++||||...+ +++|
T Consensus 85 gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~-------~~~~~le~~i~~~~~~~~~~~v~~~~~~~~tG~~~~---~~~i 154 (349)
T cd06454 85 GDLIISDSLNHASIIDGIRLSGAKKRIFKH-------NDMEDLEKLLREARRPYGKKLIVTEGVYSMDGDIAP---LPEL 154 (349)
T ss_pred CCEEEEehhhhHHHHHHHHHcCCceEEecC-------CCHHHHHHHHHHhhccCCCeEEEEeccccCCCCccC---HHHH
Confidence 999999999999998888999999887754 2667777777543 256788999999999998766 5777
Q ss_pred HHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHH-HHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHH
Q psy14428 336 AVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYF-AKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQL 414 (583)
Q Consensus 336 ~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~-~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l 414 (583)
+++|+++++++|+|++|....++.. .. .+..+ .+..+.+++++|+||.++++| ||+++ + +++++.+
T Consensus 155 ~~~~~~~~~~livD~a~~~g~~~~~-~~--~~~~~~~~~~~~~i~~~s~sK~~~~~g---G~i~~--~-----~~~~~~~ 221 (349)
T cd06454 155 VDLAKKYGAILFVDEAHSVGVYGPH-GR--GVEEFGGLTDDVDIIMGTLGKAFGAVG---GYIAG--S-----KELIDYL 221 (349)
T ss_pred HHHHHHcCCEEEEEccccccccCCC-CC--ChhhhccccccCcEEEeechhhhcccC---CEEEC--C-----HHHHHHH
Confidence 8899999999999999975333210 01 11111 123467899999999998655 99988 5 4677776
Q ss_pred HHH
Q psy14428 415 KIL 417 (583)
Q Consensus 415 ~~~ 417 (583)
...
T Consensus 222 ~~~ 224 (349)
T cd06454 222 RSY 224 (349)
T ss_pred HHh
Confidence 654
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. |
| >PRK01278 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.8e-18 Score=180.46 Aligned_cols=263 Identities=13% Similarity=0.090 Sum_probs=174.0
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
.+...+|+..|.+....|. -.+.+.+++.+.++.. ..... ....+....+++.+.+.. ..+++++ ++||
T Consensus 29 dG~~~lD~~~g~~~~~lGh--~~p~v~~a~~~~~~~~--~~~~~-~~~~~~~~~la~~l~~~~----~~~~v~~--~~sG 97 (389)
T PRK01278 29 DGERYLDFASGIAVNSLGH--AHPHLVEALKEQAEKL--WHVSN-LYRIPEQERLAERLVENS----FADKVFF--TNSG 97 (389)
T ss_pred CCCEEEECCccHhhccCCC--CCHHHHHHHHHHHHhc--Ccccc-ccCChHHHHHHHHHHhhC----CCCEEEE--cCCc
Confidence 3456788888776655665 3467777777666431 11111 112234445555554422 2468999 9999
Q ss_pred hhHHHHHHHHHHHh-CCCCC----EEEEcCCCChhhHHHHhhcCCeEEEEeccc--CCCCC----CChhhHHHHHHcCCC
Q psy14428 241 SGSLRVGTAFLERF-YPGVK----TVYFPTPTWNGHVRFCTDSRLNVGAYRYFD--NKTNG----LDFAGMMEDIKAMPE 309 (583)
Q Consensus 241 ~~al~l~~~~l~~~-~~~gd----~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d--~~~~g----~d~~~l~~~l~~~~~ 309 (583)
++|++.+..+++.. ..+|| +|++.+++|..+.......+......+... .+++. .|++.+++.+ .+
T Consensus 98 seA~~~al~~ar~~~~~~G~~~r~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l---~~ 174 (389)
T PRK01278 98 AEAVECAIKTARRYHYGKGHPERYRIITFEGAFHGRTLATIAAGGQEKYLEGFGPLVPGFDQVPFGDIEALKAAI---TP 174 (389)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCcHHHHhccCChhhcccCCCCCCCceEeCCCCHHHHHHhh---CC
Confidence 99999875555433 23465 899999999988766655544322211100 01111 3788888777 45
Q ss_pred CcEEEEeCCCCCCCC-CCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCccccc
Q psy14428 310 RSILFLQTSSHNPTG-VDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMG 388 (583)
Q Consensus 310 ~~~~i~i~~p~NPTG-~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~ 388 (583)
+++++++..+|||+| .+++.+.+++|.++|++||+++|+||+|.+|.+.+. ..+...+ +.... +.||||.++
T Consensus 175 ~~~avivep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~---~~~~~~~-~~~pd---i~t~sK~l~ 247 (389)
T PRK01278 175 NTAAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGK---LFAHEWA-GVTPD---IMAVAKGIG 247 (389)
T ss_pred CeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCc---ceeeccc-CCCCC---EEEEehhcc
Confidence 778888888888998 889999999999999999999999999998876541 1111111 11122 458999998
Q ss_pred ccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhC---ChhhhhhhhhHHHH
Q psy14428 389 LYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILS---DPKLKAQCDETERI 452 (583)
Q Consensus 389 l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~ 452 (583)
+|+|+||+++ + +++++.+........++.+++.|.++...++ ++.+.++..+..+.
T Consensus 248 -~G~~ig~~~~--~-----~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~ 306 (389)
T PRK01278 248 -GGFPLGACLA--T-----EEAAKGMTPGTHGSTYGGNPLAMAVGNAVLDVILAPGFLDNVQRMGLY 306 (389)
T ss_pred -CCcceEEEEE--c-----HHHHhccCCCCCCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 9999999999 7 4788888766666677889999998866554 44454544444433
|
|
| >PRK08088 4-aminobutyrate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.1e-18 Score=182.07 Aligned_cols=294 Identities=12% Similarity=0.084 Sum_probs=192.0
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
.+...+|+..|.+....|. ..+.+.+++.+.+++. .+.+.+..+.+.. .++|+++....+.... +++++ +++|
T Consensus 39 dG~~~lD~~~g~~~~~lGh--~~~~i~~a~~~~~~~~-~~~~~~~~~~~~~-~~la~~l~~~~~~~~~-~~~~f--~~sG 111 (425)
T PRK08088 39 EGREYLDFAGGIAVLNTGH--LHPKVVAAVEAQLKKL-SHTCFQVLAYEPY-LELCEKMNQKVPGDFA-KKTLL--VTTG 111 (425)
T ss_pred CCCEEEEcCCchhhcCCCC--CCHHHHHHHHHHHhhC-CCccccccCCHHH-HHHHHHHHHhCCCCCC-CEEEE--eCCc
Confidence 4456788887777655554 3467777777766542 1223233334443 4777777664443332 35555 5555
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEE----------------EEecccCCCCCCC----hhhH
Q psy14428 241 SGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVG----------------AYRYFDNKTNGLD----FAGM 300 (583)
Q Consensus 241 ~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~----------------~v~~~d~~~~g~d----~~~l 300 (583)
++|.+.+..+.+.+.. ...|+..+|+|.+....+...+.... .+|. +. .+.+ ++.+
T Consensus 112 sea~e~Alklar~~~~-r~~iv~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~--~~~~~~~~~~~l 187 (425)
T PRK08088 112 SEAVENAVKIARAATK-RSGVIAFTGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPC-PL--HGVSEDDAIASI 187 (425)
T ss_pred HHHHHHHHHHHHHHhC-CCeEEEECCccCCccHHHHHhhCCCCccccCCCCCCCCcEEcCCCc-cc--cCccHHHHHHHH
Confidence 5777766555555555 45566679999888655555433211 1222 11 1222 4457
Q ss_pred HHHHHc--C-CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcE
Q psy14428 301 MEDIKA--M-PERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQL 377 (583)
Q Consensus 301 ~~~l~~--~-~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~v 377 (583)
++.++. . .....+++-|..+||.....+++.+++|+++|++++++||+||+|.++.+.+ ...++ +..+.+
T Consensus 188 ~~~l~~~~~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~g~g~~g---~~~~~----~~~~~~ 260 (425)
T PRK08088 188 ERIFKNDAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTG---TLFAM----EQMGVA 260 (425)
T ss_pred HHHHHhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCc---chhHH----hhcCCC
Confidence 776642 1 2334556667889998889999999999999999999999999999876544 12122 123456
Q ss_pred EEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHH
Q psy14428 378 CLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLK 457 (583)
Q Consensus 378 i~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~ 457 (583)
..+.||||.++ +|+|+||+++ + +++++.+........++.+++.|.++..+++....++++++++...+.++
T Consensus 261 pdi~s~sK~l~-~G~rig~v~~--~-----~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 332 (425)
T PRK08088 261 ADLTTFAKSIA-GGFPLAGVTG--R-----AEVMDAIAPGGLGGTYAGNPIACAAALAVLKVFEQENLLQKANALGEKLK 332 (425)
T ss_pred CCEEEEecccc-CCCcceeeEe--c-----HHHHhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 67899999998 9999999999 7 58899888777777788999999999999987666667766666555554
Q ss_pred HHHhhcc---C---CCccchhhHHHHhcC
Q psy14428 458 ILIRGFY---S---NPPIHGARIVTEILS 480 (583)
Q Consensus 458 ~~~r~~~---~---~~p~~g~~i~~~~l~ 480 (583)
..++... . .+...|.++|+.+..
T Consensus 333 ~~l~~l~~~~~~~~~v~g~G~~~~l~l~~ 361 (425)
T PRK08088 333 DGLLAIAEKHPEIGDVRGLGAMIAIELFE 361 (425)
T ss_pred HHHHHHHHhCCCeEEEeccceEEEEEEec
Confidence 4443221 1 111227888888754
|
|
| >PLN02483 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.4e-18 Score=184.86 Aligned_cols=223 Identities=14% Similarity=0.141 Sum_probs=151.3
Q ss_pred CCCccccCCccccCCCCC--CCCChHHHHHHHHHhcc--CCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEec
Q psy14428 162 HPKKMNLGVGAYRGEDGK--PYVLPSVKEAERRIYEK--NLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQG 237 (583)
Q Consensus 162 ~~~~i~l~~g~~~~~~~~--p~~~~~v~~a~~~~~~~--~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t 237 (583)
....+||+.-++-. +.. +.+.+.+.+++.+.... .....|+...+..+|++++|++++. ++.|++ +
T Consensus 99 ~~~~~n~~s~~YLg-l~~~~~~~~~~~~~ai~~~g~~~~~sr~~~g~~~~~~ele~~lA~~~g~-------~~ai~~--~ 168 (489)
T PLN02483 99 TRRCLNLGSYNYLG-FAAADEYCTPRVIESLKKYSASTCSSRVDGGTTKLHRELEELVARFVGK-------PAAIVF--G 168 (489)
T ss_pred CceEEEeecCCccC-cCCCCHHHHHHHHHHHHHhCCCCCccccccCCcHHHHHHHHHHHHHhCC-------CcEEEE--C
Confidence 34567877655532 121 22345667766665422 2234588888999999999999973 467887 7
Q ss_pred CCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcC----CCC---
Q psy14428 238 ISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAM----PER--- 310 (583)
Q Consensus 238 ~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~----~~~--- 310 (583)
+|....+ . ++..++.+||.|++++|+|..+...++..|++++.++.. |.+.+++.+++. .++
T Consensus 169 ~G~~an~-~---~i~al~~~Gd~Vi~d~~~h~s~~~~~~~~Ga~v~~~~~~-------d~~~le~~l~~~i~~~~p~t~~ 237 (489)
T PLN02483 169 MGYATNS-T---IIPALIGKGGLIISDSLNHNSIVNGARGSGATIRVFQHN-------TPSHLEEVLREQIAEGQPRTHR 237 (489)
T ss_pred CHHHHHH-H---HHHHhCCCCCEEEEcchhhHHHHHHHHHcCCeEEEEeCC-------CHHHHHHHHHhhhhcccccccc
Confidence 7754433 2 334467779999999999999999999999999998762 445555555421 122
Q ss_pred --cE-EEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccc
Q psy14428 311 --SI-LFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNM 387 (583)
Q Consensus 311 --~~-~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~ 387 (583)
.+ ++++....|++|.+. ++++|+++|++++++||+||+|.....+............ +..+.+|+++||||+|
T Consensus 238 p~~k~livve~v~s~~G~~~---~l~~I~~la~~~~~~livDEa~s~g~~G~~G~g~~~~~~v-~~~~~dI~~~SfSKs~ 313 (489)
T PLN02483 238 PWKKIIVIVEGIYSMEGELC---KLPEIVAVCKKYKAYVYLDEAHSIGAVGKTGRGVCELLGV-DPADVDIMMGTFTKSF 313 (489)
T ss_pred CCceEEEEECCCCCCCCccc---CHHHHHHHHHHcCCEEEEECcCccCccCCCCCchHHhcCC-CcccCcEEEEecchhc
Confidence 24 444444558888776 4777788999999999999999754333110111122111 2245789999999999
Q ss_pred cccCccceEEEEEcCCchhHHHHHHHHHHHHh
Q psy14428 388 GLYGERVGTFSVLTPTSDETERIMSQLKILIR 419 (583)
Q Consensus 388 ~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~ 419 (583)
|++| ||+++ + +++++.+.....
T Consensus 314 g~~G---G~i~~--~-----~~li~~l~~~~~ 335 (489)
T PLN02483 314 GSCG---GYIAG--S-----KELIQYLKRTCP 335 (489)
T ss_pred ccCc---eEEEc--C-----HHHHHHHHHhCc
Confidence 9877 99998 6 589999887643
|
|
| >TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.8e-18 Score=180.89 Aligned_cols=210 Identities=12% Similarity=0.111 Sum_probs=152.6
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhh-c---C
Q psy14428 204 NIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTD-S---R 279 (583)
Q Consensus 204 ~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~-~---G 279 (583)
+..-...|++++|++.+ .+++++ |+|+++|+.++ +..++.+||.|+++.|+|......+.. . |
T Consensus 49 ~~p~~~~le~~lA~l~g--------~~~v~~--~~gg~~Ai~~~---l~all~~GD~Vl~~~p~y~~~~~~~~~~~~~~~ 115 (382)
T TIGR02080 49 GNPTRDLLQQALAELEG--------GAGAVV--TNTGMSAIHLV---TTALLGPDDLLVAPHDCYGGTYRLLNALAKKGC 115 (382)
T ss_pred CCchHHHHHHHHHHHhC--------CCcEEE--EcCHHHHHHHH---HHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhcC
Confidence 44456889999999885 257888 99999999985 444567799999999999975554433 2 3
Q ss_pred CeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCC
Q psy14428 280 LNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGD 359 (583)
Q Consensus 280 ~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~ 359 (583)
+++..+ + ..|++.+++++ .++++++++++|+||||.+++. ++|+++|++++++||+|++|.......
T Consensus 116 ~~v~~~---d----~~d~~~l~~ai---~~~tklV~l~~p~NPtG~~~dl---~~I~~la~~~g~~vvvD~a~~~~~~~~ 182 (382)
T TIGR02080 116 FRVLFV---D----QGDEQALRAAL---AQKPKLVLIETPSNPLLRVVDI---AKICHLAKAVGAVVVVDNTFLSPALQN 182 (382)
T ss_pred eEEEEE---C----CCCHHHHHHhc---CcCceEEEEECCCCCCCEecCH---HHHHHHHHHcCCEEEEECCCcccccCC
Confidence 444333 2 12778888877 5678999999999999999985 466778899999999999997664322
Q ss_pred CCCchHHHHHHHHhcCcEEEEecCccccc-ccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhC
Q psy14428 360 FDKDAFSLRYFAKEVGQLCLAQSFSKNMG-LYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILS 438 (583)
Q Consensus 360 ~~~~~~~~~~~~~~~~~vi~i~S~SK~~~-l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~ 438 (583)
++. + +-.++++|+||.++ .+|+|.|++++ .+ +++++++.........+.+++.++.+..-++
T Consensus 183 ------pl~-~----gaDivv~S~sK~l~G~~~~~~G~i~~--~~----~~~~~~l~~~~~~~g~~~sp~~a~l~lr~l~ 245 (382)
T TIGR02080 183 ------PLA-L----GADLVLHSCTKYLNGHSDVIAGAVIA--KD----PQVAEELAWWANNLGVTGGAFDSYLTLRGLR 245 (382)
T ss_pred ------chh-h----CCCEEEeecceeccCCCCceeEEEEe--CC----HHHHHHHHHHHHccCCCCCHHHHHHHHcccc
Confidence 121 1 22488899999885 57899999988 54 4788888887777788889998888876665
Q ss_pred C--hhhhhhhhhHHHHHHHH
Q psy14428 439 D--PKLKAQCDETERIMSQL 456 (583)
Q Consensus 439 ~--~~~~~~~~~~~~~~~~l 456 (583)
. ..++++.++...+.+.+
T Consensus 246 tl~~R~~~~~~na~~~a~~L 265 (382)
T TIGR02080 246 TLVARMRLQQRNAQAIVEYL 265 (382)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 3 23344443333333333
|
This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine. |
| >cd00610 OAT_like Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.5e-18 Score=182.10 Aligned_cols=294 Identities=14% Similarity=0.088 Sum_probs=184.3
Q ss_pred CCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCch
Q psy14428 162 HPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGS 241 (583)
Q Consensus 162 ~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~ 241 (583)
+...||+..|.+....|. ..+.+.+++.+.+.. ...|....|..++...+++.+.+..+. ..++|++ ++|++
T Consensus 35 G~~~id~~~~~~~~~lG~--~~p~v~~a~~~~~~~--~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~v~~--~~sgs 106 (413)
T cd00610 35 GNRYLDFLSGIGVLNLGH--NHPEVVEALKEQLAK--LTHFSLGFFYNEPAVELAELLLALTPE--GLDKVFF--VNSGT 106 (413)
T ss_pred CCEEEEcCccHHhhccCC--CCHHHHHHHHHHHHh--CcCccCcccCCHHHHHHHHHHHHhCCC--CCCEEEE--cCcHH
Confidence 456788887755444453 346777777666643 234544445566666666666665543 5789999 99999
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhc-------------CCeEEEEecccC-----CCCCCChhhHHHH
Q psy14428 242 GSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDS-------------RLNVGAYRYFDN-----KTNGLDFAGMMED 303 (583)
Q Consensus 242 ~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~-------------G~~~~~v~~~d~-----~~~g~d~~~l~~~ 303 (583)
+|+..+..+++...+ ++.|++.+|+|.......... +.+++.+|. ++ +++..|++.+++.
T Consensus 107 ea~~~al~~~~~~~~-~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~l~~~ 184 (413)
T cd00610 107 EAVEAALKLARAYTG-RKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPY-PYRYRPPAELADDLEALEEA 184 (413)
T ss_pred HHHHHHHHHHHHHcC-CCeEEEECCCcCCccHHHHHhcCCccccccCCCCCCCcEEeCC-CccccchhhHHHHHHHHHHH
Confidence 999987555444444 899999999998865443332 223556665 21 1133478888888
Q ss_pred HHcCCCCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEec
Q psy14428 304 IKAMPERSILFLQTSSHNPTGVDL-SEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQS 382 (583)
Q Consensus 304 l~~~~~~~~~i~i~~p~NPTG~~~-s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S 382 (583)
+++...+.+++++...+|++|.++ +++.+++|.++|+++++++|+||+|.++...+ ....... .+...-+.|
T Consensus 185 l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~~g---~~~~~~~----~~~~~d~~t 257 (413)
T cd00610 185 LEEHPEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTG---KMFAFEH----FGVEPDIVT 257 (413)
T ss_pred HhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCc---chhhHhh----cCCCCCeEE
Confidence 854334556666655666779876 77889999999999999999999999875433 1111111 112223568
Q ss_pred CcccccccCccceEEEEEcCCchhHHHHHHHH--HHHHhccccCCChHHHHHHHHHh---CChhhhhhhhhHHHHHH-HH
Q psy14428 383 FSKNMGLYGERVGTFSVLTPTSDETERIMSQL--KILIRGFYSNPPIHGARIVTEIL---SDPKLKAQCDETERIMS-QL 456 (583)
Q Consensus 383 ~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l--~~~~~~~~~~~s~~~q~~~~~~l---~~~~~~~~~~~~~~~~~-~l 456 (583)
|||.++ .|+|+||+++ + +++++.+ .........+.+++.|.++.+.+ +++.+.+++..+...+. .+
T Consensus 258 ~sK~l~-~g~~~g~~~~--~-----~~~~~~~~~~~~~~~~t~~~~~~~~~a~~a~l~~l~~~~~~~~~~~~~~~l~~~l 329 (413)
T cd00610 258 LGKGLG-GGLPLGAVLG--R-----EEIMDAFPAGPGLHGGTFGGNPLACAAALAVLEVLEEEGLLENAAELGEYLRERL 329 (413)
T ss_pred Eccccc-CccccEEEEE--c-----HHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 999999 5899999998 6 5788886 33333345677888888776555 33344444444333322 22
Q ss_pred HHHHh--hccCCCccchhhHHHHhcC
Q psy14428 457 KILIR--GFYSNPPIHGARIVTEILS 480 (583)
Q Consensus 457 ~~~~r--~~~~~~p~~g~~i~~~~l~ 480 (583)
+.+.. ......+..|.++++.+..
T Consensus 330 ~~~~~~~~~~~~~~~~g~~~~~~~~~ 355 (413)
T cd00610 330 RELAEKHPLVGDVRGRGLMIGIELVK 355 (413)
T ss_pred HHHHhhCCcEEEeecCceEEEEEEec
Confidence 22221 1111223456666665543
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. |
| >PRK06460 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.5e-18 Score=180.00 Aligned_cols=182 Identities=14% Similarity=0.073 Sum_probs=130.4
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCC----ChhhHHHHhhcC
Q psy14428 204 NIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPT----WNGHVRFCTDSR 279 (583)
Q Consensus 204 ~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~----y~~~~~~~~~~G 279 (583)
......+|++++|++.+.. ..+++ ++ |++++..+ +..++++||+|++++|. |..+...++..|
T Consensus 43 ~~p~~~~L~~~lA~l~g~~-------~~v~~--~s-G~~ai~~~---l~al~~~Gd~Vl~~~~~~~~ty~~~~~~~~~~G 109 (376)
T PRK06460 43 ANPTVLELTKKIVELENAE-------MGVAF--SS-GMGAISTT---ALALLKPGNSVLVHRDMFGRSYRFFTDYLKNWG 109 (376)
T ss_pred CCccHHHHHHHHHHHhCCC-------cEEEe--CC-HHHHHHHH---HHHHhCCCCEEEEecCCcCcHHHHHHHHHHhhC
Confidence 3556789999999998642 24444 44 46788774 44566779999999764 555667788889
Q ss_pred CeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCC
Q psy14428 280 LNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGD 359 (583)
Q Consensus 280 ~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~ 359 (583)
+++..++. +. .+.+++.+ .++++++++++||||||.+++.++ |+++|+++|++||+||+|......
T Consensus 110 ~~v~~~~~-~~------~~~l~~~~---~~~tklV~l~sp~NPtG~v~d~~~---I~~la~~~g~~vivDea~~~~~~~- 175 (376)
T PRK06460 110 VNVDASNP-GS------DNIIEKAK---SKRYDVVFVENITNPLLRVVDITE---LSKVCKENGSILIVDATFSTPINQ- 175 (376)
T ss_pred cEEEEECC-CC------HHHHHHhc---CCCceEEEEECCCCCCCcccCHHH---HHHHHHHcCCEEEEECCcCccccC-
Confidence 99888776 22 12233322 467899999999999999999764 678889999999999999754211
Q ss_pred CCCchHHHHHHHHhcCcEEEEecCccccccc-CccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHH
Q psy14428 360 FDKDAFSLRYFAKEVGQLCLAQSFSKNMGLY-GERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHG 429 (583)
Q Consensus 360 ~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~-GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~ 429 (583)
.++ + .+..+++.|+||.++-. |.|+||+++ + +++++++.+.......+.++..
T Consensus 176 -----~~l----~-~~~divv~S~sK~l~G~~~~~~G~~~~--~-----~~l~~~l~~~~~~~g~~~~~~~ 229 (376)
T PRK06460 176 -----KPL----E-LGADIVVHSASKFLAGHNDVIAGLAAG--Y-----GKLLNVIDQMRRTLGTSLDPHA 229 (376)
T ss_pred -----Chh----h-cCCCEEEeecceeccCCCCceEEEEec--C-----HHHHHHHHHHHHhcCCCCCHHH
Confidence 111 1 24579999999998522 368999998 6 5788888877666655555543
|
|
| >TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.8e-18 Score=179.88 Aligned_cols=200 Identities=11% Similarity=0.014 Sum_probs=145.7
Q ss_pred CChHHHHHHHHHhccC-CCCCCCCC-------CCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHH
Q psy14428 182 VLPSVKEAERRIYEKN-LDHEYANI-------GGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLER 253 (583)
Q Consensus 182 ~~~~v~~a~~~~~~~~-~~~~Y~~~-------~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~ 253 (583)
+++.+.+++.+..... ....+.+. ..+.++|++++++++.. ++++|++ |+|+++++.++...+..
T Consensus 28 ~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~-----~~~~i~~--t~g~t~~l~~~~~~~~~ 100 (398)
T TIGR03392 28 KPQAVIDATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFLNAP-----DAENIVW--TRGTTESINLVAQSYAR 100 (398)
T ss_pred CCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCC-----CCCeEEE--eCChHHHHHHHHHHhhh
Confidence 5577888877766431 11112222 23467999999998632 4689999 99999999986433211
Q ss_pred -hCCCCCEEEEcCCCChh----hHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCC
Q psy14428 254 -FYPGVKTVYFPTPTWNG----HVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLS 328 (583)
Q Consensus 254 -~~~~gd~Vlv~~P~y~~----~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s 328 (583)
..++||+|++++|.|+. +...++..|++++.+|+ +. ++.+|++.+++.+ .++++++++++||||||.+++
T Consensus 101 ~~~~~gd~Vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~-~~-~~~~~~~~l~~~i---~~~t~lv~i~~~~n~tG~~~~ 175 (398)
T TIGR03392 101 PRLQPGDEIIVSEAEHHANLIPWLMVAQQTGAKVVKLPI-GA-DLLPDIRQLPELL---TPRTRILALGQMSNVTGGCPD 175 (398)
T ss_pred ccCCCCCEEEECCcchhHHHHHHHHHHHHcCcEEEEEec-CC-CCCcCHHHHHHHh---ccCceEEEEECccccccccCC
Confidence 13569999999999865 45567888999999998 54 3568999998887 567899999999999999987
Q ss_pred HHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHH
Q psy14428 329 EDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETE 408 (583)
Q Consensus 329 ~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~ 408 (583)
. ++|+++|+++|+++|+|++|......- .+.. .+-.+++.|++|.+|.+| +||+++ + +
T Consensus 176 ~---~~i~~~~~~~~~~~ivD~a~~~~~~~~------~~~~----~~~d~~~~s~~K~~gp~G--~G~l~~--~-----~ 233 (398)
T TIGR03392 176 L---ARAITLAHQYGAVVVVDGAQGVVHGPP------DVQA----LDIDFYAFSGHKLYGPTG--IGVLYG--K-----T 233 (398)
T ss_pred H---HHHHHHHHHcCCEEEEEhhhhcCCCCC------Chhh----cCCCEEEEecccccCCCc--eEEEEE--c-----H
Confidence 4 567888999999999999996543321 1221 233467888889998666 899998 6 4
Q ss_pred HHHHHHH
Q psy14428 409 RIMSQLK 415 (583)
Q Consensus 409 ~li~~l~ 415 (583)
++++++.
T Consensus 234 ~~~~~~~ 240 (398)
T TIGR03392 234 ELLEAMP 240 (398)
T ss_pred HHHhhCC
Confidence 6776654
|
Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems. |
| >PRK08133 O-succinylhomoserine sulfhydrylase; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.3e-18 Score=178.95 Aligned_cols=189 Identities=14% Similarity=0.099 Sum_probs=140.8
Q ss_pred CCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHH----HHhhcCCeE
Q psy14428 207 GDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVR----FCTDSRLNV 282 (583)
Q Consensus 207 G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~----~~~~~G~~~ 282 (583)
-..+|++.+|++++. +++++ |+||++|+.++ +..+.++||+|+++++.|..... .++..|+++
T Consensus 62 ~~~~le~~la~l~g~--------~~~v~--~ssG~~Ai~~a---l~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~v 128 (390)
T PRK08133 62 TVTMFQERLAALEGA--------EACVA--TASGMAAILAV---VMALLQAGDHVVSSRSLFGSTVSLFEKIFARFGIET 128 (390)
T ss_pred HHHHHHHHHHHHhCC--------CcEEE--ECCHHHHHHHH---HHHHhCCCCEEEEccCcchhHHHHHHHHHHHcCcEE
Confidence 357888999998753 45777 99999999875 33456679999999998876544 456789999
Q ss_pred EEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCC
Q psy14428 283 GAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDK 362 (583)
Q Consensus 283 ~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~ 362 (583)
+.+++ + |++.+++.+ .++++++++++|+||||.+.+ +++|+++|++++++||+|++|.......
T Consensus 129 ~~vd~-~------d~~~l~~~i---~~~tklV~ie~p~NptG~v~d---l~~I~~la~~~gi~livD~t~~~~~~~~--- 192 (390)
T PRK08133 129 TFVDL-T------DLDAWRAAV---RPNTKLFFLETPSNPLTELAD---IAALAEIAHAAGALLVVDNCFCTPALQQ--- 192 (390)
T ss_pred EEECC-C------CHHHHHHhc---CcCCeEEEEECCCCCCCCcCC---HHHHHHHHHHcCCEEEEECCCcccccCC---
Confidence 98876 2 677787776 568899999999999999986 5677888999999999999986554321
Q ss_pred chHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhC
Q psy14428 363 DAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILS 438 (583)
Q Consensus 363 ~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~ 438 (583)
++ . .+..+++.|+||.++.+|.|+|++++. + +++++++....+......+.+.++++..-++
T Consensus 193 ---pl----~-~g~Divv~S~sK~~~g~g~~~GG~vv~-~-----~~~~~~~~~~~~~~g~~~~~~~a~~~l~gl~ 254 (390)
T PRK08133 193 ---PL----K-LGADVVIHSATKYLDGQGRVLGGAVVG-S-----KELMEEVFGFLRTAGPTLSPFNAWVFLKGLE 254 (390)
T ss_pred ---ch----h-hCCcEEEeecceeecCCcceEeEEEEc-C-----HHHHHHHHHHHHHhCCCCCHHHHHHHHcccc
Confidence 12 1 123578999999999899999554441 4 3667777766666666667776666555444
|
|
| >PRK13392 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.8e-17 Score=174.79 Aligned_cols=238 Identities=13% Similarity=0.078 Sum_probs=154.9
Q ss_pred CccccCCccccCCCCCCCCChHHHHHHHHHhccC-C----C-CCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEec
Q psy14428 164 KKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKN-L----D-HEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQG 237 (583)
Q Consensus 164 ~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~-~----~-~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t 237 (583)
..++++..++. .++ +.+.+.+++.+..... . . ..|....-..+|++++|++++. ++.|++ +
T Consensus 47 ~~~~~~sn~yl-~l~---~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~Le~~la~~~g~-------~~~i~~--~ 113 (410)
T PRK13392 47 RVTIWCSNDYL-GMG---QHPDVIGAMVDALDRYGAGAGGTRNISGTSHPHVLLERELADLHGK-------ESALLF--T 113 (410)
T ss_pred eEEEEECCCcc-CCC---CCHHHHHHHHHHHHHcCCCCchhhhcccChHHHHHHHHHHHHHhCC-------CCEEEE--C
Confidence 45666665442 122 4567787776665431 0 0 1132222467899999998852 467887 8
Q ss_pred CCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcC-CCCcEEEEe
Q psy14428 238 ISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAM-PERSILFLQ 316 (583)
Q Consensus 238 ~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~-~~~~~~i~i 316 (583)
+|+ ++...+...+.. ..+||.|+++.+.+..+...++..|+++..++. . |++.+++.+++. .++++++++
T Consensus 114 sG~-~a~~~~i~~l~~-~~~g~~vi~~~~~h~s~~~~~~~~g~~~~~~~~--~-----d~~~l~~~l~~~~~~~t~~v~i 184 (410)
T PRK13392 114 SGY-VSNDAALSTLGK-LLPGCVILSDALNHASMIEGIRRSGAEKQVFRH--N-----DLADLEEQLASVDPDRPKLIAF 184 (410)
T ss_pred cHH-HHHHHHHHHHhc-CCCCCEEEEehhhhHHHHHHHHHcCCeEEEEeC--C-----CHHHHHHHHHhccCCCCEEEEE
Confidence 775 444432111211 235898888777777777777888988766643 1 555666666543 357899999
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCc-EEEEecCcccccccCccce
Q psy14428 317 TSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQ-LCLAQSFSKNMGLYGERVG 395 (583)
Q Consensus 317 ~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~-vi~i~S~SK~~~l~GlRiG 395 (583)
++|+||||.+++ +++|.++|+++++++|+||+|....++.. . ..+....+..++ .++++||||.||++| |
T Consensus 185 ~~~~n~tG~~~~---l~~i~~l~~~~~~~livDea~~~g~~g~~--g-~g~~~~~~~~~~~div~~tlsK~~g~~G---G 255 (410)
T PRK13392 185 ESVYSMDGDIAP---IEAICDLADRYNALTYVDEVHAVGLYGAR--G-GGIAERDGLMDRIDMIQGTLAKAFGCLG---G 255 (410)
T ss_pred eCCCCCCccccc---HHHHHHHHHHcCCEEEEECCccccCcCCC--C-CchhhhccCCCCCcEEEEEChHhhhccc---c
Confidence 999999999998 66778889999999999999984433321 1 111111121223 388999999999999 9
Q ss_pred EEEEEcCCchhHHHHHHHHHHHHhcc--ccCCChHHHHHHHHHhCC
Q psy14428 396 TFSVLTPTSDETERIMSQLKILIRGF--YSNPPIHGARIVTEILSD 439 (583)
Q Consensus 396 ~lv~~~p~~~~~~~li~~l~~~~~~~--~~~~s~~~q~~~~~~l~~ 439 (583)
|+++ + +++++.+++..... ..+.+++.|.++...++.
T Consensus 256 ~~~~--~-----~~~~~~l~~~~~~~~~s~~~~~~~~~a~~aaL~~ 294 (410)
T PRK13392 256 YIAA--S-----ADLIDFVRSFAPGFIFTTALPPAVAAGATAAIRH 294 (410)
T ss_pred hhhc--C-----HHHHHHHHHhCcchhccCcCCHHHHHHHHHHHHH
Confidence 9988 6 57888888765432 334455778777777753
|
|
| >PRK08045 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1e-17 Score=176.80 Aligned_cols=210 Identities=13% Similarity=0.118 Sum_probs=154.7
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhh----cC
Q psy14428 204 NIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTD----SR 279 (583)
Q Consensus 204 ~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~----~G 279 (583)
+......|++++|++.+. +.+++ ++|+++++.++ +..++.+||+|++++|+|+.....+.. .|
T Consensus 50 ~~pt~~~L~~~lA~l~g~--------~~~i~--~~sg~~Ai~~~---l~~l~~~GD~Vl~~~~~y~~~~~~~~~~~~~~g 116 (386)
T PRK08045 50 GNPTRDVVQRALAELEGG--------AGAVL--TNTGMSAIHLV---TTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGC 116 (386)
T ss_pred CCccHHHHHHHHHHHhCC--------CeEEE--ECCHHHHHHHH---HHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhCC
Confidence 444578999999998752 35888 99999999985 445667799999999999964443332 33
Q ss_pred CeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCC
Q psy14428 280 LNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGD 359 (583)
Q Consensus 280 ~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~ 359 (583)
.++..++ ..|++.+++.+ .++++++++++|+||||.+++. ++|.++|++++++||+|++|.......
T Consensus 117 i~v~~vd-------~~d~e~l~~~l---~~~tklV~l~sP~NPtG~v~di---~~I~~ia~~~g~~vivDeay~~~~~~~ 183 (386)
T PRK08045 117 YRVLFVD-------QGDEQALRAAL---AEKPKLVLVESPSNPLLRVVDI---AKICHLAREAGAVSVVDNTFLSPALQN 183 (386)
T ss_pred eEEEEeC-------CCCHHHHHHhc---ccCCeEEEEECCCCCCCEecCH---HHHHHHHHHcCCEEEEECCCCccccCC
Confidence 4554442 23778887776 5678999999999999999985 566777889999999999997654321
Q ss_pred CCCchHHHHHHHHhcCcEEEEecCccccc-ccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhC
Q psy14428 360 FDKDAFSLRYFAKEVGQLCLAQSFSKNMG-LYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILS 438 (583)
Q Consensus 360 ~~~~~~~~~~~~~~~~~vi~i~S~SK~~~-l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~ 438 (583)
++.. . --+++.|+||.++ .++++.|++++ .+ +++++++.........+.+++.++++...++
T Consensus 184 ------pl~~----g-aDivv~S~tK~l~G~~d~~~G~vi~--~~----~~~~~~l~~~~~~~g~~~~p~~~~l~~rgl~ 246 (386)
T PRK08045 184 ------PLAL----G-ADLVLHSCTKYLNGHSDVVAGVVIA--KD----PDVVTELAWWANNIGVTGGAFDSYLLLRGLR 246 (386)
T ss_pred ------chhh----C-CCEEEeecceeccCCCCceeEEEEe--Cc----HHHHHHHHHHHHhcCCCCCHHHHHHHHhhhc
Confidence 2211 1 2389999999995 56788999987 54 4688888888888888899999999999998
Q ss_pred C--hhhhhhhhhHHHHHHHH
Q psy14428 439 D--PKLKAQCDETERIMSQL 456 (583)
Q Consensus 439 ~--~~~~~~~~~~~~~~~~l 456 (583)
. ..++++.++...+.+.+
T Consensus 247 tl~~R~~~~~~na~~la~~L 266 (386)
T PRK08045 247 TLVPRMELAQRNAQAIVKYL 266 (386)
T ss_pred cHHHHHHHHHHHHHHHHHHH
Confidence 6 23444444444444443
|
|
| >PRK08249 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-17 Score=177.26 Aligned_cols=193 Identities=14% Similarity=0.070 Sum_probs=144.6
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHH----HhhcC
Q psy14428 204 NIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRF----CTDSR 279 (583)
Q Consensus 204 ~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~----~~~~G 279 (583)
+..-...|++.+|++.+. +..++ +++|++|+.++ +..++.+||.|+++.|+|...... ++..|
T Consensus 62 ~~p~~~~le~~lA~l~g~--------~~~i~--~ssG~~Ai~~~---l~all~~GD~Vi~~~~~y~~~~~~~~~~~~~~G 128 (398)
T PRK08249 62 TNPTVQAFEEKVRILEGA--------EAATA--FSTGMAAISNT---LYTFLKPGDRVVSIKDTYGGTNKIFTEFLPRMG 128 (398)
T ss_pred CChHHHHHHHHHHHHhCC--------CeEEE--eCChHHHHHHH---HHHhcCCCCEEEEcCCchHHHHHHHHHHHhhCC
Confidence 445568999999999863 34455 67778888875 334566799999999999976543 45678
Q ss_pred CeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCC
Q psy14428 280 LNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGD 359 (583)
Q Consensus 280 ~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~ 359 (583)
++++.++. .|++.+++.+ .++++++++++|+||||.+++ +++|.++|++++++||+|++|.......
T Consensus 129 i~v~~vd~-------~d~e~l~~~i---~~~tklV~ie~p~NPtg~v~d---l~~I~~la~~~gi~livD~t~a~~~~~~ 195 (398)
T PRK08249 129 VDVTLCET-------GDHEQIEAEI---AKGCDLLYLETPTNPTLKIVD---IERLAAAAKKVGALVVVDNTFATPINQN 195 (398)
T ss_pred eEEEEcCC-------CCHHHHHHhc---CCCCeEEEEECCCCCCCccCC---HHHHHHHHHHcCCEEEEECCcCccccCC
Confidence 88766543 3788888877 567899999999999999998 4557888999999999999998655331
Q ss_pred CCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCC
Q psy14428 360 FDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSD 439 (583)
Q Consensus 360 ~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~ 439 (583)
++.. +.-+++.|+||.++.+|.++|++++ .+ +++++++.........+.+.+.++++..-++.
T Consensus 196 ------~l~~-----~~Divv~S~sK~l~g~~~~~gG~vv--~~----~~l~~~l~~~~~~~g~~~s~~~a~l~l~~l~t 258 (398)
T PRK08249 196 ------PLAL-----GADLVIHSATKFLSGHADALGGVVC--GS----KELMEQVYHYREINGATMDPMSAYLILRGMKT 258 (398)
T ss_pred ------chhh-----CCCEEeccCceecCCCCCceEEEEE--CC----HHHHHHHHHHHHhcCCCCCHHHHHHHHhCcch
Confidence 1211 2237789999999878988855444 22 47889888877777778888888887776663
|
|
| >cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.1e-17 Score=173.84 Aligned_cols=176 Identities=14% Similarity=0.031 Sum_probs=138.4
Q ss_pred CHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEec
Q psy14428 208 DAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRY 287 (583)
Q Consensus 208 ~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~ 287 (583)
..+|++++|++++. +++++ |+|+++++.++ +..++.+||+|+++.|+|......++..|++++.+++
T Consensus 46 ~~~l~~~la~~~g~--------~~i~~--~~g~t~al~~~---l~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~ 112 (361)
T cd06452 46 IKDFHHDLAEFLGM--------DEARV--TPGAREGKFAV---MHSLCEKGDWVVVDGLAHYTSYVAAERAGLNVREVPN 112 (361)
T ss_pred HHHHHHHHHHHcCC--------ceEEE--eCCHHHHHHHH---HHHhcCCCCEEEEcCCcchHHHHHHHhcCCEEEEEec
Confidence 56888999988752 68999 99999999885 4556677999999999876666678889999999998
Q ss_pred ccCC-CCCCChhhHHHHHHcCC----CCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCC
Q psy14428 288 FDNK-TNGLDFAGMMEDIKAMP----ERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDK 362 (583)
Q Consensus 288 ~d~~-~~g~d~~~l~~~l~~~~----~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~ 362 (583)
+.+ ++++|++.+++.+.... ++++++++++|+||||... ++++|+++|++++++||+|++|..-..+
T Consensus 113 -~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~~---~~~~i~~~~~~~~~~vivD~a~~~g~~~---- 184 (361)
T cd06452 113 -TGHPEYHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLH---DAKKIAKVCHEYGVPLLLNGAYTVGRMP---- 184 (361)
T ss_pred -CCCCCcccCHHHHHHHHHHHhhccCCCceEEEEECCCCCCeeec---cHHHHHHHHHHcCCeEEEECCcccCCcC----
Confidence 543 35899999998885321 3678999999999999764 4678888899999999999999742211
Q ss_pred chHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHH
Q psy14428 363 DAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILI 418 (583)
Q Consensus 363 ~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~ 418 (583)
.+.. ..+..++++|+||.++ ++.|+||+++ + +++++++.+..
T Consensus 185 --~~~~----~~~~d~~~~s~~K~l~-~~~~~G~l~~--~-----~~~~~~l~~~~ 226 (361)
T cd06452 185 --VSGK----ELGADFIVGSGHKSMA-ASAPIGVLAT--T-----EEWADIVFRTS 226 (361)
T ss_pred --CCHH----HcCCCEEEecCCcccc-CCCCeEEEEE--C-----HHHHHHHhccc
Confidence 1111 2246789999999998 5669999999 6 47888887654
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface. |
| >cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-17 Score=177.44 Aligned_cols=211 Identities=15% Similarity=0.140 Sum_probs=153.9
Q ss_pred CccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCC-----CCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecC
Q psy14428 164 KKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYAN-----IGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGI 238 (583)
Q Consensus 164 ~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~-----~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~ 238 (583)
.+++++.|.++.. +++.+.++..+. . ....|.+ ..|.+++++++++++.+..|.+ .+++++ ++
T Consensus 21 ~~~~l~~g~~~~~-----~p~~~~~~~~~~-~--~~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g~~--~~~v~~--~~ 88 (398)
T cd00613 21 SMSFLGSGTYKHN-----PPAVIKRNILEN-E--FYTAYTPYQPEISQGRLQALFELQTMLCELTGMD--VANASL--QD 88 (398)
T ss_pred CcccccccccCCc-----CcHHHHHHhccc-c--CcccCCCCChhhhhhHHHHHHHHHHHHHHHHCCC--ccceec--cC
Confidence 4589999998633 456666666555 2 1345666 7999999999999999877653 457777 66
Q ss_pred CchhHHHHHHHHHHHhCCC--CCEEEEcCCCChhhHHHHhhcC----CeEEEEecccCCCCCCChhhHHHHHHcCCCCcE
Q psy14428 239 SGSGSLRVGTAFLERFYPG--VKTVYFPTPTWNGHVRFCTDSR----LNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSI 312 (583)
Q Consensus 239 G~~~al~l~~~~l~~~~~~--gd~Vlv~~P~y~~~~~~~~~~G----~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~ 312 (583)
+++.+...+ ++..+..+ ||+|++++|.|+.+...++..| ++++.+++ ++ ++.+|++.+++.+ .++++
T Consensus 89 ~g~~~~~~~--~~~~~~~~~~gd~Vl~~~~~h~~~~~~~~~~~~~~g~~~~~v~~-~~-~~~~d~~~l~~~i---~~~t~ 161 (398)
T cd00613 89 EATAAAEAA--GLAAIRAYHKRNKVLVPDSAHPTNPAVARTRGEPLGIEVVEVPS-DE-GGTVDLEALKEEV---SEEVA 161 (398)
T ss_pred chHHHHHHH--HHHHHhcccCCCEEEEcCccCcchHHHHHHhcccCCcEEEEecc-CC-CCCcCHHHHHHhc---CCCeE
Confidence 444333332 22223344 9999999999999988888887 89999988 33 3567889888877 56788
Q ss_pred EEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCccccccc--
Q psy14428 313 LFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLY-- 390 (583)
Q Consensus 313 ~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~-- 390 (583)
++++++|+ |||.+. +.+++|.++|+++|+++|+|+++....... . ....+..+++.|++|.+ +|
T Consensus 162 ~viv~~~~-~~G~~~--~~l~~i~~la~~~g~~livD~~~~~~~~~~---~-------~~~~~~d~~~~s~~K~~-~p~g 227 (398)
T cd00613 162 ALMVQYPN-TLGVFE--DLIKEIADIAHSAGALVYVDGDNLNLTGLK---P-------PGEYGADIVVGNLQKTG-VPHG 227 (398)
T ss_pred EEEEECCC-CCceec--chHHHHHHHHHhcCCEEEEEeccccccCCC---C-------hHHcCCCEEEeeccccC-CCCC
Confidence 88888885 999883 457999999999999999999865333111 0 11235679999999998 67
Q ss_pred --CccceEEEEEcCCchhHHHHHHHH
Q psy14428 391 --GERVGTFSVLTPTSDETERIMSQL 414 (583)
Q Consensus 391 --GlRiG~lv~~~p~~~~~~~li~~l 414 (583)
|+|+||+++ + +++++.+
T Consensus 228 ~Ggp~~g~l~~--~-----~~~~~~~ 246 (398)
T cd00613 228 GGGPGAGFFAV--K-----KELVRFL 246 (398)
T ss_pred CCCCceeEEEE--h-----hhhHhhC
Confidence 899999999 6 3555543
|
This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. |
| >PRK07503 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-17 Score=177.36 Aligned_cols=210 Identities=14% Similarity=0.093 Sum_probs=151.4
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhH----HHHhhcC
Q psy14428 204 NIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHV----RFCTDSR 279 (583)
Q Consensus 204 ~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~----~~~~~~G 279 (583)
+..-...|++++|++.+.. ..++ +++|+.|+.++ +..+..+||+|+++.|+|.... ..++..|
T Consensus 63 ~~p~~~~le~~lA~l~g~~--------~~i~--~~sG~~Al~~~---l~~ll~~Gd~Viv~~~~y~~t~~~~~~~~~~~G 129 (403)
T PRK07503 63 SNPTLALLEQRMASLEGGE--------AAVA--LASGMGAITAT---LWTLLRPGDEVIVDQTLYGCTFAFLHHGLGEFG 129 (403)
T ss_pred CCchHHHHHHHHHHHhCCC--------cEEE--EcCHHHHHHHH---HHHHcCCCCEEEEccCccchHHHHHHHHHhhCC
Confidence 3345789999999988632 2344 66777888875 3345677999999999887543 3456689
Q ss_pred CeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCC
Q psy14428 280 LNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGD 359 (583)
Q Consensus 280 ~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~ 359 (583)
++++.+++ + |++.+++.+ .++++++++++|+||||.+.+ +++|.++|+++|++||+|++|.......
T Consensus 130 ~~v~~vd~-~------d~~~l~~~i---~~~tklV~le~p~NPtG~~~d---i~~I~~la~~~gi~lIvD~a~a~~~~~~ 196 (403)
T PRK07503 130 VTVRHVDL-T------DPAALKAAI---SDKTRMVYFETPANPNMRLVD---IAAVAEIAHGAGAKVVVDNTYCTPYLQR 196 (403)
T ss_pred EEEEEeCC-C------CHHHHHHhc---CccCcEEEEeCCCCCCCeeeC---HHHHHHHHHHcCCEEEEECCCcccccCC
Confidence 99888876 2 677887777 567889999999999999887 5677888899999999999998654321
Q ss_pred CCCchHHHHHHHHhcCcEEEEecCcccccccC-ccceEEEEEcCCchhHHHHHHHHHHH--HhccccCCChHHHHHHHHH
Q psy14428 360 FDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYG-ERVGTFSVLTPTSDETERIMSQLKIL--IRGFYSNPPIHGARIVTEI 436 (583)
Q Consensus 360 ~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~G-lRiG~lv~~~p~~~~~~~li~~l~~~--~~~~~~~~s~~~q~~~~~~ 436 (583)
++. .+..+++.|+||.++.+| +|.|+++. + ++++++++.. ......+.+.+.++++..-
T Consensus 197 ------~l~-----~g~Di~v~S~tK~l~g~gd~~gG~v~~--~-----~~l~~~l~~~~~~~~~g~~~s~~~a~l~l~~ 258 (403)
T PRK07503 197 ------PLE-----LGADLVVHSATKYLGGHGDITAGLVVG--G-----KALADRIRLEGLKDMTGAVMSPFDAFLLMRG 258 (403)
T ss_pred ------chh-----hCCCEEEccccccccCCCceeEEEEEc--C-----HHHHHHHHhhhHHhCcCCCCCHHHHHHHHcC
Confidence 121 133589999999999776 77888886 5 4788888743 4445677888888887777
Q ss_pred hCC--hhhhhhhhhHHHHHHHHH
Q psy14428 437 LSD--PKLKAQCDETERIMSQLK 457 (583)
Q Consensus 437 l~~--~~~~~~~~~~~~~~~~l~ 457 (583)
++. ..++++.++...+.+.+.
T Consensus 259 L~tl~~r~~~~~~na~~~a~~L~ 281 (403)
T PRK07503 259 LKTLALRMDRHCASAQAVAEWLA 281 (403)
T ss_pred cchHHHHHHHHHHHHHHHHHHHH
Confidence 764 345555544444444443
|
|
| >PRK06767 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.6e-16 Score=168.21 Aligned_cols=190 Identities=17% Similarity=0.125 Sum_probs=130.0
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhh----cC
Q psy14428 204 NIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTD----SR 279 (583)
Q Consensus 204 ~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~----~G 279 (583)
+..-..+|++.+|++.+. ++.|++ ++|+.|+..+ +..++.+||+|+++.|.|......+.. .|
T Consensus 59 ~~pt~~~Le~~lA~l~G~-------~~al~~---~sG~~Ai~~~---l~al~~~Gd~Vv~~~~~y~~~~~~~~~~~~~~g 125 (386)
T PRK06767 59 GNPTVKLFEERMAVLEGG-------EEALAF---GSGMAAISAT---LIGFLKAGDHIICSNGLYGCTYGFLEVLEEKFM 125 (386)
T ss_pred CCcchHHHHHHHHHHhCC-------CcEEEE---CCHHHHHHHH---HHHHhCCCCEEEEcCCcHHHHHHHHHHHHhhcC
Confidence 445578999999999863 234544 4556677764 344566799999999998876655543 35
Q ss_pred CeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCC
Q psy14428 280 LNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGD 359 (583)
Q Consensus 280 ~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~ 359 (583)
+++..++. .|++.+++++ .++++++++++|+||||.+++. ++|.++|+++++++|+|++|.......
T Consensus 126 i~~~~~~~-------~d~~~l~~~i---~~~tklV~lesp~NptG~v~dl---~~I~~la~~~g~~vivD~a~a~~~~~~ 192 (386)
T PRK06767 126 ITHSFCDM-------ETEADIENKI---RPNTKLIFVETPINPTMKLIDL---KQVIRVAKRNGLLVIVDNTFCSPYLQR 192 (386)
T ss_pred eEEEEeCC-------CCHHHHHHhh---CcCceEEEEeCCCCCCceecCH---HHHHHHHHHcCCEEEEECCCcccccCC
Confidence 54443332 2677887777 5678999999999999999984 666777899999999999996443321
Q ss_pred CCCchHHHHHHHHhcCcEEEEecCcccccccCccc-eEEEEEcCCchhHHHHHHHHHHHH-hccccCCChHHHHHHHHHh
Q psy14428 360 FDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERV-GTFSVLTPTSDETERIMSQLKILI-RGFYSNPPIHGARIVTEIL 437 (583)
Q Consensus 360 ~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRi-G~lv~~~p~~~~~~~li~~l~~~~-~~~~~~~s~~~q~~~~~~l 437 (583)
++ . .+.-+++.|+||.++.+|.|+ ||+++ + +++++++.+.. .......+++.++++...+
T Consensus 193 ------pl----~-~g~Div~~S~sK~l~g~g~~~gG~v~~--~-----~~~i~~~~~~~~~~~g~~~~~~~a~l~~~~L 254 (386)
T PRK06767 193 ------PL----E-LGCDAVVHSATKYIGGHGDVVAGVTIC--K-----TRALAEKIRPMRKDIGGIMAPFDAWLLLRGL 254 (386)
T ss_pred ------ch----h-cCCcEEEecCcceecCCCCceeEEEEe--C-----hHHHHHHHHHHHHHhCCCCCHHHHHHHHcCC
Confidence 11 1 133478889999999899996 88988 6 35666654332 2233344555555444433
|
|
| >PRK07811 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.2e-17 Score=173.45 Aligned_cols=193 Identities=17% Similarity=0.112 Sum_probs=140.4
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHH----hhcC
Q psy14428 204 NIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFC----TDSR 279 (583)
Q Consensus 204 ~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~----~~~G 279 (583)
+.....+|++++|++.+... .++ +++|++|+.++ +..++.+||+|++++|+|......+ +..|
T Consensus 59 ~~p~~~~Le~~lA~~~g~~~-------~i~---~~sG~~Ai~~~---l~all~~Gd~Vl~~~~~y~~t~~~~~~~~~~~g 125 (388)
T PRK07811 59 GNPTRTALEEQLAALEGGAY-------GRA---FSSGMAATDCL---LRAVLRPGDHIVIPNDAYGGTFRLIDKVFTRWG 125 (388)
T ss_pred CCccHHHHHHHHHHHhCCCc-------eEE---eCCHHHHHHHH---HHHHhCCCCEEEEcCCCchHHHHHHHHhCcCCC
Confidence 55678999999999987532 233 45567898885 4445677999999999999654433 3357
Q ss_pred CeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCC
Q psy14428 280 LNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGD 359 (583)
Q Consensus 280 ~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~ 359 (583)
++++.++. .|++.+++.+ .++++++++++|+||||.+. ++++|+++|++++++||+|++|.......
T Consensus 126 i~~~~~d~-------~d~e~l~~~i---~~~tklV~ie~p~NPtg~~~---dl~~I~~la~~~gi~lIvD~a~a~~~~~~ 192 (388)
T PRK07811 126 VEYTPVDL-------SDLDAVRAAI---TPRTKLIWVETPTNPLLSIT---DIAALAELAHDAGAKVVVDNTFASPYLQQ 192 (388)
T ss_pred eEEEEeCC-------CCHHHHHHhc---CcCCeEEEEECCCCCcceec---CHHHHHHHHHHcCCEEEEECCCCccccCC
Confidence 77766654 2788888777 56789999999999999764 56777888999999999999997654321
Q ss_pred CCCchHHHHHHHHhcCcEEEEecCcccccccC-ccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhC
Q psy14428 360 FDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYG-ERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILS 438 (583)
Q Consensus 360 ~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~G-lRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~ 438 (583)
++. .+--+++.|+||.++.+| .+.||+++ ++ +++.+++...........+.+.++++...++
T Consensus 193 ------p~~-----~gaDivv~S~sK~l~g~~~~~gG~vv~--~~----~~l~~~~~~~~~~~g~~~s~~~a~l~~~~L~ 255 (388)
T PRK07811 193 ------PLA-----LGADVVVHSTTKYIGGHSDVVGGALVT--ND----EELDEAFAFLQNGAGAVPGPFDAYLTLRGLK 255 (388)
T ss_pred ------chh-----hCCcEEEecCceeecCCCCcEEEEEEE--CC----HHHHHHHHHHHHhcCCCCCHHHHHHHHhccC
Confidence 121 123489999999998665 57799998 54 3677777766555555666776666666665
Q ss_pred C
Q psy14428 439 D 439 (583)
Q Consensus 439 ~ 439 (583)
.
T Consensus 256 t 256 (388)
T PRK07811 256 T 256 (388)
T ss_pred c
Confidence 4
|
|
| >PRK10874 cysteine sulfinate desulfinase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.6e-17 Score=171.60 Aligned_cols=200 Identities=14% Similarity=0.050 Sum_probs=145.4
Q ss_pred CChHHHHHHHHHhccCC-C-CCCC------CCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHH
Q psy14428 182 VLPSVKEAERRIYEKNL-D-HEYA------NIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLER 253 (583)
Q Consensus 182 ~~~~v~~a~~~~~~~~~-~-~~Y~------~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~ 253 (583)
+++.+.+++.+...+.. . .... -...+.++|+++|++++. .++++|++ |+|+++++.++...+..
T Consensus 31 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~-----~~~~~i~~--~~~~t~~i~~~~~~~~~ 103 (401)
T PRK10874 31 KPQAVIEATQQFYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQLLNA-----PDAKNIVW--TRGTTESINLVAQSYAR 103 (401)
T ss_pred CCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHHcCC-----CCCCEEEE--ECCHHHHHHHHHHHhhh
Confidence 55778888777765310 0 0000 012256888999998853 16789999 99999999986433311
Q ss_pred -hCCCCCEEEEcCCCChh----hHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCC
Q psy14428 254 -FYPGVKTVYFPTPTWNG----HVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLS 328 (583)
Q Consensus 254 -~~~~gd~Vlv~~P~y~~----~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s 328 (583)
..++||+|++++|.|+. +...++..|++++.+++ +. ++.+|++.+++.+ .++++++++++|+||||.+++
T Consensus 104 ~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~-~~-~~~~d~~~l~~~i---~~~t~lv~i~~~~n~tG~~~~ 178 (401)
T PRK10874 104 PRLQPGDEIIVSEAEHHANLVPWLMVAQQTGAKVVKLPL-GA-DRLPDVDLLPELI---TPRTRILALGQMSNVTGGCPD 178 (401)
T ss_pred ccCCCcCEEEECCcchHHHHHHHHHHHHHhCCEEEEEec-CC-CCcCCHHHHHHhc---CcCcEEEEEeCCcccccCcCC
Confidence 13569999999999864 55667888999999998 44 3568899998887 567899999999999999997
Q ss_pred HHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHH
Q psy14428 329 EDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETE 408 (583)
Q Consensus 329 ~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~ 408 (583)
. ++|.++|+++|+++|+|++|....+.- .+.. .+..+++.|++|.+|.+| +||+++ + +
T Consensus 179 ~---~~i~~l~~~~g~~~ivD~a~~~g~~~~------~~~~----~~~d~~~~s~~K~~gp~G--~G~l~~--~-----~ 236 (401)
T PRK10874 179 L---ARAITLAHQAGMVVMVDGAQGAVHFPA------DVQA----LDIDFYAFSGHKLYGPTG--IGVLYG--K-----S 236 (401)
T ss_pred H---HHHHHHHHHcCCEEEEECCcccccccC------Cchh----cCCCEEEEecccccCCCc--cEEEEE--c-----h
Confidence 5 566888899999999999996433221 1211 234578899999998777 599998 6 4
Q ss_pred HHHHHHH
Q psy14428 409 RIMSQLK 415 (583)
Q Consensus 409 ~li~~l~ 415 (583)
++++++.
T Consensus 237 ~~~~~~~ 243 (401)
T PRK10874 237 ELLEAMS 243 (401)
T ss_pred HHHhcCC
Confidence 6777654
|
|
| >PRK02936 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.5e-16 Score=168.36 Aligned_cols=248 Identities=12% Similarity=0.049 Sum_probs=168.6
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
.+...+|+..|.+....|. ..+.+.+++.+.+++. . +.......++++++++++.+..+ .+++++ +++|
T Consensus 27 ~G~~~lD~~s~~~~~~lG~--~~p~v~~a~~~~~~~~--~-~~~~~~~~~~~~~la~~l~~~~~----~~~~~~--~~sG 95 (377)
T PRK02936 27 NGKTYLDFTSGIAVCNLGH--CHPTVTKAVQEQLDDI--W-HVSNLFTNSLQEEVASLLAENSA----GDLVFF--CNSG 95 (377)
T ss_pred CCCEEEECCcchhhccCCC--CCHHHHHHHHHHHHhc--c-ccccccCCHHHHHHHHHHHhcCC----CCEEEE--eCCc
Confidence 3456788888876555564 4577778777776542 1 12234557899999999986543 257888 9999
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHH-HHhhcCCeEE---EEecccCCCC---CCChhhHHHHHHcCCCCcEE
Q psy14428 241 SGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVR-FCTDSRLNVG---AYRYFDNKTN---GLDFAGMMEDIKAMPERSIL 313 (583)
Q Consensus 241 ~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~-~~~~~G~~~~---~v~~~d~~~~---g~d~~~l~~~l~~~~~~~~~ 313 (583)
++|...+..+.+.. ...+.|++.+++|..... .....+.... ..|+ .++.. --|++.+++.+ .+++++
T Consensus 96 ~~a~~~A~~~a~~~-~g~~~vi~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~l~~~~---~~~~~~ 170 (377)
T PRK02936 96 AEANEAALKLARKH-TGKSKIVTFEQSFHGRTFGTMSATGQEKIKEGFGPL-LPGFTHVPFNDIKALKEVM---NEEVAA 170 (377)
T ss_pred HHHHHHHHHHHHHh-cCCCeEEEECCCcCCCcHHhhhccCCccccccCCCC-CCCceEeCCCCHHHHHHhc---cCCeEE
Confidence 99999875433322 324679999999875432 2222221110 0111 00000 01677787766 456889
Q ss_pred EEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCc
Q psy14428 314 FLQTSSHNPTGVD-LSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGE 392 (583)
Q Consensus 314 i~i~~p~NPTG~~-~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~Gl 392 (583)
+++..+++++|.. .+++.+++|.++|++||+++|+||+|.+|.+.+ ...+...+ ...+.+ .+|||.++ +|+
T Consensus 171 ii~e~i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g---~~~~~~~~-~~~~di---~t~sK~l~-~G~ 242 (377)
T PRK02936 171 VMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTG---TLFAYEQF-GLDPDI---VTVAKGLG-NGI 242 (377)
T ss_pred EEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCc---hhhHHHhh-CCCCcE---EEEccccc-CCC
Confidence 9999999999977 589999999999999999999999999887655 12222222 212233 37999999 999
Q ss_pred cceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCC
Q psy14428 393 RVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSD 439 (583)
Q Consensus 393 RiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~ 439 (583)
|+||+++ + +++++.+........++.++++|.++.+.++.
T Consensus 243 ~ig~v~~--~-----~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~ 282 (377)
T PRK02936 243 PVGAMIG--K-----KELGTAFGPGSHGSTFGGNPLAMAAAKEVLQV 282 (377)
T ss_pred ccEEEEE--c-----HHHHhhccCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 9999999 6 57888886554455667899999999888864
|
|
| >TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.3e-17 Score=175.99 Aligned_cols=248 Identities=15% Similarity=0.044 Sum_probs=171.6
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
.+...+|+..|.+....|. .++.+.+++.+.+.+. ...+.+..+..+|+++|++++.. .++|++ ++||
T Consensus 46 dG~~ylD~~~g~~~~~lGh--~~p~v~~ai~~q~~~~-~~~~~~~~~~~~lae~l~~~~~~-------~~~v~~--~~sG 113 (423)
T TIGR00713 46 DGNEYIDYVLSWGPLILGH--AHPRVVEAVKEALERG-TSYGAPTEAEILLAKEIISRVPS-------VEMVRF--VNSG 113 (423)
T ss_pred CCCEEEEccccccccccCC--CCHHHHHHHHHHHHhC-CcCCCCCHHHHHHHHHHHHhCCc-------ccEEEE--eCCH
Confidence 4567899998888766665 3478888887777653 22233667889999999998743 268999 9999
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhh---cCCeEEEEeccc-------CCCC---CCChhhHHHHHHcC
Q psy14428 241 SGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTD---SRLNVGAYRYFD-------NKTN---GLDFAGMMEDIKAM 307 (583)
Q Consensus 241 ~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~---~G~~~~~v~~~d-------~~~~---g~d~~~l~~~l~~~ 307 (583)
++|++.+..+.+.... .++|+..+|+|..+...+.. .|......+... .... --|++.+++.+.+.
T Consensus 114 seA~e~Alk~ar~~~g-r~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~ 192 (423)
T TIGR00713 114 TEATMSAVRLARGYTG-RDKIIKFEGCYHGHHDALLVKAGSGAATLGLPTSPGVPEDFAKLTLVLPYNDLEALEEVFEEY 192 (423)
T ss_pred HHHHHHHHHHHHHhhC-CCEEEEEcCCCCCChhhhhccccCcccccCCCCCCCCCcccccceEEeCCCCHHHHHHHHHHc
Confidence 9999987666555554 68999999999997543322 111111111100 0000 01788888888644
Q ss_pred CCCcEEEEe-CCCCCCCCCCCC-HHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcc
Q psy14428 308 PERSILFLQ-TSSHNPTGVDLS-EDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSK 385 (583)
Q Consensus 308 ~~~~~~i~i-~~p~NPTG~~~s-~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK 385 (583)
..++.++++ |.|+| +|.+.+ ++.+++|.++|++|++++|+||+|.+|.++. .. ....+ +..+. +.+|||
T Consensus 193 ~~~~aavi~ep~~~~-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~r~g~---~~-~~~~~-~~~pD---i~t~sK 263 (423)
T TIGR00713 193 GEEIAGVIVEPVAGN-MGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGFRVAL---GG-AQEYF-GVEPD---LTTLGK 263 (423)
T ss_pred CCcEEEEEEeCCCCC-CCCcCCCHHHHHHHHHHHHHhCCEEEEEccccccccCc---ch-hHHHh-CCCcc---hhhhhh
Confidence 345555555 79999 798887 6899999999999999999999999996642 11 11111 21222 337999
Q ss_pred cccccCccceEEEEEcCCchhHHHHHHHHHHH---HhccccCCChHHHHHHHHHhC
Q psy14428 386 NMGLYGERVGTFSVLTPTSDETERIMSQLKIL---IRGFYSNPPIHGARIVTEILS 438 (583)
Q Consensus 386 ~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~---~~~~~~~~s~~~q~~~~~~l~ 438 (583)
.++ +|+|+||+++ + +++++.+... .....++.++++|.++...++
T Consensus 264 ~l~-~G~pig~v~~--~-----~~i~~~~~~~~~~~~~~T~~~~~~~~aaa~a~l~ 311 (423)
T TIGR00713 264 IIG-GGLPVGAFGG--R-----REIMERLAPEGPVYQAGTLSGNPLAMAAGLATLK 311 (423)
T ss_pred hhc-CCCceeeeeE--H-----HHHHHhhCcCCCeeeccCCCCCHHHHHHHHHHHH
Confidence 999 9999999999 6 5788888632 233456789999998777765
|
This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases. |
| >PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.76 E-value=4e-17 Score=173.16 Aligned_cols=209 Identities=15% Similarity=0.108 Sum_probs=145.6
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHH----hhcCC
Q psy14428 205 IGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFC----TDSRL 280 (583)
Q Consensus 205 ~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~----~~~G~ 280 (583)
..-...|++++|++.+.. ..++ +++|+.++..+ +..++.+||+|++++|.|..+...+ +..|+
T Consensus 64 ~p~~~~Le~~lA~l~G~~--------~~~~--~~sG~~Ai~~~---l~~~l~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~ 130 (398)
T PRK07504 64 NPTVDMFEKRMCALEGAE--------DARA--TASGMAAVTAA---ILCQVKAGDHVVAARALFGSCRYVVETLLPRYGI 130 (398)
T ss_pred CchHHHHHHHHHHHhCCC--------eeeE--ecCHHHHHHHH---HHHHhCCCCEEEEcCCchhHHHHHHHHHHhhcCe
Confidence 344689999999998642 2234 56777788654 3335567999999999999765544 45688
Q ss_pred eEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCC
Q psy14428 281 NVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDF 360 (583)
Q Consensus 281 ~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~ 360 (583)
+++.++ .+|++.+++++ .+++++++++||+||||.+++ +++|.++|+++++++|+|++|....+..
T Consensus 131 ~v~~vd-------~~d~e~l~~ai---~~~tklV~lesp~NptG~v~d---l~~I~~la~~~gi~lvvD~a~a~~~~~~- 196 (398)
T PRK07504 131 ESTLVD-------GLDLDNWEKAV---RPNTKVFFLESPTNPTLEVID---IAAVAKIANQAGAKLVVDNVFATPLFQK- 196 (398)
T ss_pred EEEEEC-------CCCHHHHHHhc---CcCceEEEEECCCCCCcEecC---HHHHHHHHHHcCCEEEEECCccccccCC-
Confidence 877763 24788888877 578999999999999999998 5666778899999999999998654432
Q ss_pred CCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHH-HHHHHHhccccCCChHHHHHHHHHhCC
Q psy14428 361 DKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMS-QLKILIRGFYSNPPIHGARIVTEILSD 439 (583)
Q Consensus 361 ~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~-~l~~~~~~~~~~~s~~~q~~~~~~l~~ 439 (583)
++ + .+..+++.|+||.++.+|+|+|++++ .++ +++. .+....+......+.+.++++..-++.
T Consensus 197 -----~~----~-~gaDivv~S~sK~l~g~g~~~GG~vv--~~~----~~i~~~~~~~~~~~g~~~s~~~A~~~l~~L~t 260 (398)
T PRK07504 197 -----PL----E-LGAHIVVYSATKHIDGQGRCLGGVVL--SDK----AWIEEHLQDYFRHTGPSLSPFNAWTLLKGLET 260 (398)
T ss_pred -----ch----h-hCCCEEEeeccccccCCccceEEEEE--eCc----HHHHHHHHHHHHHhCCCCCHHHHHHHHhccch
Confidence 11 1 14567899999999989999975554 232 3443 455444555566777777777776664
Q ss_pred --hhhhhhhhhHHHHHHHH
Q psy14428 440 --PKLKAQCDETERIMSQL 456 (583)
Q Consensus 440 --~~~~~~~~~~~~~~~~l 456 (583)
..++++.++.+.+.+.+
T Consensus 261 l~~R~~~~~~na~~la~~L 279 (398)
T PRK07504 261 LPVRVRQQTESAAAIADFL 279 (398)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 33444444444443333
|
|
| >TIGR01979 sufS cysteine desulfurases, SufS subfamily | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.5e-16 Score=167.00 Aligned_cols=199 Identities=13% Similarity=0.068 Sum_probs=143.9
Q ss_pred CChHHHHHHHHHhccCC--CC--CCC----CCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHH
Q psy14428 182 VLPSVKEAERRIYEKNL--DH--EYA----NIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLER 253 (583)
Q Consensus 182 ~~~~v~~a~~~~~~~~~--~~--~Y~----~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~ 253 (583)
+++.+.+++.+...... .. .+. ...+.+++|++++++++.. ++++|++ |+|+++++.++...+..
T Consensus 30 ~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~~~~-----~~~~v~~--~~g~t~~l~~~~~~~~~ 102 (403)
T TIGR01979 30 KPQQVIDAVAEYYRNSNANVHRGIHTLSVRATEAYEAVREKVAKFINAA-----SDEEIVF--TRGTTESINLVAYSWGD 102 (403)
T ss_pred CCHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCcC-----CCCeEEE--eCCHHHHHHHHHHHhhh
Confidence 45677777766654310 00 010 1124678999999998632 3679999 99999999886433221
Q ss_pred -hCCCCCEEEEcCCCChh----hHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCC
Q psy14428 254 -FYPGVKTVYFPTPTWNG----HVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLS 328 (583)
Q Consensus 254 -~~~~gd~Vlv~~P~y~~----~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s 328 (583)
..++||+|++++|.|+. +....+..|++++.++. + +++.+|++.+++.+ .++++++++++|+||||..++
T Consensus 103 ~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~~~~v~~-~-~~~~~~~~~l~~~i---~~~~~lv~~~~~~~~tG~~~~ 177 (403)
T TIGR01979 103 SNLKAGDEIVISEMEHHANIVPWQLLAERTGATLKFIPL-D-DDGTLDLDDLEKLL---TEKTKLVAITHVSNVLGTVNP 177 (403)
T ss_pred hcCCCCCEEEECcchhhHHHHHHHHHHHhcCcEEEEEec-C-CCCCCCHHHHHHHh---ccCCeEEEEEcccccccccCC
Confidence 24569999999997665 34556678999999998 5 34678999998887 567899999999999999998
Q ss_pred HHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHH
Q psy14428 329 EDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETE 408 (583)
Q Consensus 329 ~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~ 408 (583)
+++|.++|+++|+++|+|++|...... ..+ ...+..+++.|++|.+|.+| +|++++ + +
T Consensus 178 ---~~~i~~~~~~~~~~~ivD~a~~~g~~~------~~~----~~~~~d~~~~s~~K~~gp~G--~g~l~~--~-----~ 235 (403)
T TIGR01979 178 ---VEEIAKLAHQVGAKVLVDGAQAVPHMP------VDV----QALDCDFYVFSGHKMYGPTG--IGVLYG--K-----E 235 (403)
T ss_pred ---HHHHHHHHHHcCCEEEEEchhhcCccc------cCc----cccCCCEEEEecccccCCCC--ceEEEE--c-----h
Confidence 556788899999999999998643221 111 12245689999999998667 899998 5 3
Q ss_pred HHHHHH
Q psy14428 409 RIMSQL 414 (583)
Q Consensus 409 ~li~~l 414 (583)
++++.+
T Consensus 236 ~~~~~~ 241 (403)
T TIGR01979 236 ELLEQM 241 (403)
T ss_pred HHHhcC
Confidence 565554
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. |
| >PRK08776 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.4e-17 Score=171.68 Aligned_cols=189 Identities=14% Similarity=0.125 Sum_probs=140.1
Q ss_pred CHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChh----hHHHHhhcCCeEE
Q psy14428 208 DAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNG----HVRFCTDSRLNVG 283 (583)
Q Consensus 208 ~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~----~~~~~~~~G~~~~ 283 (583)
...|++.+|++.+. ++.|++ ++|++++.++ +..+..+||.|+++.|+|.. +...++..|.+++
T Consensus 62 ~~~Le~~lA~l~g~-------~~~v~~---~sG~~Ai~~~---l~all~pGD~Vvv~~p~Y~~t~~~~~~~~~~~g~~v~ 128 (405)
T PRK08776 62 RDLLGEALAELEGG-------AGGVIT---ATGMGAINLV---LNALLQPGDTLVVPHDAYGGSWRLFNALAKKGHFALI 128 (405)
T ss_pred HHHHHHHHHHHhCC-------CceEEE---cCHHHHHHHH---HHHHhCCCCEEEEccCCchHHHHHHHHHHHhcCcEEE
Confidence 46788888887642 245554 4457899875 44456679999999999987 4444556688888
Q ss_pred EEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCc
Q psy14428 284 AYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKD 363 (583)
Q Consensus 284 ~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~ 363 (583)
.++. .|++.+++.+ .+++++++++||+||||.+.+ +++|+++|+++|++||+|++|..-...
T Consensus 129 ~v~~-------~d~~~l~~~i---~~~tklV~l~~P~NPtG~v~d---l~~I~~la~~~gi~vIvD~a~a~~~~~----- 190 (405)
T PRK08776 129 TADL-------TDPRSLADAL---AQSPKLVLIETPSNPLLRITD---LRFVIEAAHKVGALTVVDNTFLSPALQ----- 190 (405)
T ss_pred EECC-------CCHHHHHHhc---CcCCeEEEEECCCCCCCccCC---HHHHHHHHHHcCCEEEEECCCcccccC-----
Confidence 7765 1677887776 457899999999999999854 677888899999999999999753211
Q ss_pred hHHHHHHHHhcCcEEEEecCccccccc-CccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCC
Q psy14428 364 AFSLRYFAKEVGQLCLAQSFSKNMGLY-GERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSD 439 (583)
Q Consensus 364 ~~~~~~~~~~~~~vi~i~S~SK~~~l~-GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~ 439 (583)
.++. + +--+++.|.||.++.+ ++..|++++ ++ +++.+++.........+.+++.++++...++.
T Consensus 191 -~pl~-~----gaDivv~S~tK~l~g~~~~~~G~vv~--~~----~~l~~~l~~~~~~~g~~~s~~~a~l~~~gl~t 255 (405)
T PRK08776 191 -KPLE-F----GADLVLHSTTKYINGHSDVVGGAVVA--RD----AELHQQLVWWANALGLTGSPFDAFLTLRGLRT 255 (405)
T ss_pred -Cccc-c----cCCEEEecCceeecCCCCceEEEEEe--CC----HHHHHHHHHHHHhcCCCCCHHHHHHHHhhhCc
Confidence 1221 1 2238899999999766 578999887 55 46888887766666667889998888877663
|
|
| >PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.76 E-value=2e-16 Score=168.74 Aligned_cols=283 Identities=14% Similarity=0.183 Sum_probs=174.2
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
.+...+|+..|.+....|. -.+.+.+++.+.+++. ..+...... +....+++.+....+ .+.+++ +++|
T Consensus 38 dG~~~iD~~~~~~~~~lGh--~~p~v~~a~~~~~~~~--~~~~~~~~~-~~~~~l~~~l~~~~~----~~~~~~--~~sG 106 (403)
T PRK05093 38 QGKEYIDFAGGIAVTALGH--CHPALVKALKEQGEKL--WHISNVFTN-EPALRLAKKLIDATF----AERVFF--ANSG 106 (403)
T ss_pred CCCEEEEcCcCHHhccCCC--CCHHHHHHHHHHHHhc--CcccCccCC-HHHHHHHHHHHhhCC----CCEEEE--eCch
Confidence 3456788887766555664 3467777777666541 111111112 223344444443221 368888 8999
Q ss_pred hhHHHHHHHHHHHhC-----CCCCEEEEcCCCChhhHHHH-hhcC------------CeEEEEecccCCCCCCChhhHHH
Q psy14428 241 SGSLRVGTAFLERFY-----PGVKTVYFPTPTWNGHVRFC-TDSR------------LNVGAYRYFDNKTNGLDFAGMME 302 (583)
Q Consensus 241 ~~al~l~~~~l~~~~-----~~gd~Vlv~~P~y~~~~~~~-~~~G------------~~~~~v~~~d~~~~g~d~~~l~~ 302 (583)
++|...+..+.+... ...+.|+..+-+|....... ...| .+++.+|. + |++.+++
T Consensus 107 seA~e~a~klar~~~~~~~~~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~----d~~~l~~ 179 (403)
T PRK05093 107 AEANEAAFKLARRYACDRHGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGFGPKPADITHVPF---N----DLAAVKA 179 (403)
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCcCCchhhhHhhcCChhhhhcCCCCCCCcEEeCC---C----CHHHHHH
Confidence 999988765554432 22357877777776653221 1111 12333332 1 6778877
Q ss_pred HHHcCCCCcEEEEeCCCCCCCCCCC--CHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEE
Q psy14428 303 DIKAMPERSILFLQTSSHNPTGVDL--SEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLA 380 (583)
Q Consensus 303 ~l~~~~~~~~~i~i~~p~NPTG~~~--s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i 380 (583)
.+ .++++++++. |.||+|.++ +.+.+++|+++|++|++++|+||+|.++.+.+ ...+...+ +.... +
T Consensus 180 ~l---~~~~aaiiie-p~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g---~~~~~~~~-~~~pd---i 248 (403)
T PRK05093 180 VI---DDHTCAVVVE-PIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTG---DLFAYMHY-GVTPD---I 248 (403)
T ss_pred Hh---cCCeEEEEEe-cccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCc---cchhhhhc-CCCCC---E
Confidence 77 4556666665 999999876 89999999999999999999999999987765 12222111 11112 5
Q ss_pred ecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHh---CChhhhhhhhhHHH-HHHHH
Q psy14428 381 QSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEIL---SDPKLKAQCDETER-IMSQL 456 (583)
Q Consensus 381 ~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l---~~~~~~~~~~~~~~-~~~~l 456 (583)
.||||+++ +|+|+||+++ + +++++.+........++.+++.|.++.+.+ .++.+.++...+.+ +.+.+
T Consensus 249 ~s~sK~l~-~G~rig~vv~--~-----~~i~~~l~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~L 320 (403)
T PRK05093 249 LTSAKALG-GGFPIGAMLT--T-----AEIASHFKVGTHGSTYGGNPLACAVAEAVFDIINTPEVLEGVKARRQRFVDGL 320 (403)
T ss_pred EEeccccc-CCcceEEEEE--c-----HHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence 69999999 9999999999 7 578888876555556678999998888844 44444443333332 33333
Q ss_pred HHHHhh--ccCCCccchhhHHHHhcC
Q psy14428 457 KILIRG--FYSNPPIHGARIVTEILS 480 (583)
Q Consensus 457 ~~~~r~--~~~~~p~~g~~i~~~~l~ 480 (583)
+.+... .+..++..|.++|..+..
T Consensus 321 ~~~~~~~~~~~~~~~~G~~~~~~l~~ 346 (403)
T PRK05093 321 QKINQKYGVFSEIRGMGLLIGAELKP 346 (403)
T ss_pred HHHHhhCCCeEeEeeCceEEEEEecC
Confidence 332111 122445567777776643
|
|
| >PRK07050 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-16 Score=169.47 Aligned_cols=208 Identities=13% Similarity=0.074 Sum_probs=153.5
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHH----HHhhcC
Q psy14428 204 NIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVR----FCTDSR 279 (583)
Q Consensus 204 ~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~----~~~~~G 279 (583)
+.....+|+++++++.+ .+++++ ++|+++|+.++ +..++++||+|++++|+|..+.. .+...|
T Consensus 63 ~~pt~~~Le~~lA~l~g--------~~~~l~--~~sgt~Ai~~~---l~al~~~GD~Vl~~~~~y~~~~~~~~~~~~~~G 129 (394)
T PRK07050 63 ATPTSLALAQRLAEIEG--------GRHALL--QPSGLAAISLV---YFGLVKAGDDVLIPDNAYGPNRDHGEWLARDFG 129 (394)
T ss_pred CCHHHHHHHHHHHHHhC--------CCeEEE--eccHHHHHHHH---HHHHhCCCCEEEEecCCcccHHHHHHHHHHhcC
Confidence 44456788888888765 257889 99999999986 33446779999999999998764 456679
Q ss_pred CeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCC
Q psy14428 280 LNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGD 359 (583)
Q Consensus 280 ~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~ 359 (583)
++++.++. + +.+.+++.+ .+++++++++||+|||| +..++++|+++|++++++||+|++|..-..-.
T Consensus 130 i~v~~vd~-~------~~~~l~~~i---~~~tklV~le~p~Np~~---~~~di~~I~~ia~~~gi~livD~a~a~~~~~~ 196 (394)
T PRK07050 130 ITVRFYDP-L------IGAGIADLI---QPNTRLIWLEAPGSVTM---EVPDVPAITAAARARGVVTAIDNTYSAGLAFK 196 (394)
T ss_pred eEEEEECC-C------CHHHHHHhc---CCCCeEEEEECCCCCCc---cHhhHHHHHHHHHHcCCEEEEECCcccccccC
Confidence 98887754 1 335566665 57789999999999996 67789999999999999999999986533211
Q ss_pred CCCchHHHHHHHHhcCcEEEEecCccccc-ccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhC
Q psy14428 360 FDKDAFSLRYFAKEVGQLCLAQSFSKNMG-LYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILS 438 (583)
Q Consensus 360 ~~~~~~~~~~~~~~~~~vi~i~S~SK~~~-l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~ 438 (583)
++ + .+..|++.|+||.++ -.+.+.|++++ .+ ++++++++........+.+++..+.+...++
T Consensus 197 ------~l----~-~GaDi~v~S~tK~~~g~~~~~gG~v~~--~~----~~~~~~~~~~~~~~G~~~~~~~a~l~lr~l~ 259 (394)
T PRK07050 197 ------PF----E-HGVDISVQALTKYQSGGSDVLMGATIT--AD----AELHAKLKLARMRLGIGVSADDCSLVLRGLP 259 (394)
T ss_pred ------HH----H-cCCeEEEEECCceecCCCCeeEEEEEE--CC----HHHHHHHHHHHHhcCCCCCHHHHHHHHcCCC
Confidence 11 1 245699999999996 24567899888 54 4788888877776777888888877777666
Q ss_pred C--hhhhhhhhhHHHHHH
Q psy14428 439 D--PKLKAQCDETERIMS 454 (583)
Q Consensus 439 ~--~~~~~~~~~~~~~~~ 454 (583)
+ ..++++.++..++.+
T Consensus 260 tl~~Rl~~~~~~a~~la~ 277 (394)
T PRK07050 260 SLQVRLAAHDRSALEVAE 277 (394)
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 4 234444444443333
|
|
| >TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.6e-16 Score=167.27 Aligned_cols=192 Identities=14% Similarity=0.133 Sum_probs=142.2
Q ss_pred hHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHh-CCCCCEEE
Q psy14428 184 PSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERF-YPGVKTVY 262 (583)
Q Consensus 184 ~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~-~~~gd~Vl 262 (583)
+...+++.+.+..+. + .|..++++++.+++.+.. ..+++++ |+|+++|+.++ +..+ ..|||+|+
T Consensus 11 ~~e~~a~~~~~~~~~---~---~~~g~~~~~~e~~la~~~----g~~~~v~--~~sgt~aL~~~---l~al~~~pGd~Vi 75 (376)
T TIGR02379 11 GQELEYIAEAISEGK---L---SGDGPFSRRCETWLENRT----GTKKALL--TPSCTAALEMA---ALLLDIQPGDEVI 75 (376)
T ss_pred HHHHHHHHHHHHcCC---c---cCCcHHHHHHHHHHHHHh----CCCeEEE--eCCHHHHHHHH---HHHcCCCCcCEEE
Confidence 445666666654321 1 123456666666665543 3468999 99999999986 2333 56799999
Q ss_pred EcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhc
Q psy14428 263 FPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQR 342 (583)
Q Consensus 263 v~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~ 342 (583)
+++|+|..+...+...|++++.+++ |++++.+|++.+++.+ ++++++++ |+||||...+ +.+|.++|+++
T Consensus 76 v~~~t~~~~~~~~~~~G~~~v~vd~-d~~~~~~d~~~le~~i---~~~tk~Ii---p~~~~G~~~d---~~~I~~la~~~ 145 (376)
T TIGR02379 76 MPSYTFVSTANAFVLRGAKIVFVDI-RPDTMNIDETLIESAI---THRTKAIV---PVHYAGVACD---MDTIMALANKH 145 (376)
T ss_pred ECCCCcHHHHHHHHHcCCEEEEEec-CCCcCCCCHHHHHHhc---CcCceEEE---EeCCCCCccC---HHHHHHHHHHC
Confidence 9999999999999999999999999 6666778999998877 56778775 6789998886 45778889999
Q ss_pred CeEEEEeccCCCCC-CCCCCCchHHHHHHHHhcCcEEEEecCc----ccccccCccceEEEEEcCCchhHHHHHHHHHHH
Q psy14428 343 HLYPFFDMAYLGLT-SGDFDKDAFSLRYFAKEVGQLCLAQSFS----KNMGLYGERVGTFSVLTPTSDETERIMSQLKIL 417 (583)
Q Consensus 343 ~i~iI~De~Y~~l~-~~~~~~~~~~~~~~~~~~~~vi~i~S~S----K~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~ 417 (583)
+++||+|+++.... +++. . + +.+..+.+|| |.+. +|.|.|++++ ++ +++.++++..
T Consensus 146 ~i~vIeDaa~~~g~~~~~~--~---~-------g~~~~~~~fSf~~~K~l~-~g~~gG~v~~--~~----~~~~~~~~~~ 206 (376)
T TIGR02379 146 QLFVIEDAAQGVMSTYKGR--A---L-------GSIGHLGTFSFHETKNYT-SGGEGGALLI--ND----QAFIERAEII 206 (376)
T ss_pred CCEEEEECccccCCccCCc--c---c-------CCCCCEEEEeCCCCCcCc-ccCCceEEEE--CC----HHHHHHHHHH
Confidence 99999999998775 4431 1 1 2333455566 9996 8999999999 65 4788888766
Q ss_pred Hh
Q psy14428 418 IR 419 (583)
Q Consensus 418 ~~ 419 (583)
..
T Consensus 207 ~~ 208 (376)
T TIGR02379 207 RE 208 (376)
T ss_pred HH
Confidence 43
|
This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041). |
| >cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Probab=99.75 E-value=1e-16 Score=168.79 Aligned_cols=210 Identities=16% Similarity=0.114 Sum_probs=155.4
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHH----HhhcC
Q psy14428 204 NIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRF----CTDSR 279 (583)
Q Consensus 204 ~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~----~~~~G 279 (583)
+..-..+|++.++++.+. +..++ +++|++|+..+ +..+..+||+|+++.|.|...... ++..|
T Consensus 38 ~~p~~~~le~~la~l~g~--------~~a~~--~~sG~~Ai~~~---l~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g 104 (369)
T cd00614 38 GNPTVDALEKKLAALEGG--------EAALA--FSSGMAAISTV---LLALLKAGDHVVASDDLYGGTYRLFERLLPKLG 104 (369)
T ss_pred CChhHHHHHHHHHHHHCC--------CCEEE--EcCHHHHHHHH---HHHHcCCCCEEEECCCCcchHHHHHHHHHhhcC
Confidence 555678999999998763 35566 77788999885 444566799999999999886543 44678
Q ss_pred CeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCC
Q psy14428 280 LNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGD 359 (583)
Q Consensus 280 ~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~ 359 (583)
+++..++. + |++.+++.+ .++++++++.+|+||||.+.+ +++|+++|+++|+++|+|++|....+..
T Consensus 105 ~~~~~v~~-~------d~~~l~~~i---~~~~~~v~~e~~~np~g~~~d---l~~i~~la~~~g~~livD~t~~~~~~~~ 171 (369)
T cd00614 105 IEVTFVDP-D------DPEALEAAI---KPETKLVYVESPTNPTLKVVD---IEAIAELAHEHGALLVVDNTFATPYLQR 171 (369)
T ss_pred eEEEEeCC-C------CHHHHHHhc---CCCCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCcchhcCC
Confidence 88887765 1 577777776 457889999999999999987 5677888999999999999997654321
Q ss_pred CCCchHHHHHHHHhcCcEEEEecCcccccccC-ccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhC
Q psy14428 360 FDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYG-ERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILS 438 (583)
Q Consensus 360 ~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~G-lRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~ 438 (583)
++ + .+..+++.|+||.++.+| ++.||+++ ++ ++++++++........+.+++.++++...++
T Consensus 172 ------~~----~-~g~Divv~S~tK~l~g~~~~~gG~v~~--~~----~~l~~~l~~~~~~~g~~~~p~~a~~~l~~l~ 234 (369)
T cd00614 172 ------PL----E-LGADIVVHSATKYIGGHSDVIAGVVVG--SG----EALIQRLRFLRLALGTILSPFDAWLLLRGLK 234 (369)
T ss_pred ------hh----h-hCCcEEEeccceeccCCCCceEEEEEe--Cc----HHHHHHHHHHHHhhCCCCCHHHHHHHHcCCC
Confidence 11 1 245689999999998776 89999999 63 2688888877766677788888888777776
Q ss_pred C--hhhhhhhhhHHHHHHHH
Q psy14428 439 D--PKLKAQCDETERIMSQL 456 (583)
Q Consensus 439 ~--~~~~~~~~~~~~~~~~l 456 (583)
. ..++++.++.+.+.+.+
T Consensus 235 tl~~r~~~~~~na~~la~~L 254 (369)
T cd00614 235 TLPLRMERHSENALKVAEFL 254 (369)
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 4 23344444444443333
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. |
| >TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-16 Score=170.18 Aligned_cols=201 Identities=14% Similarity=0.109 Sum_probs=144.2
Q ss_pred CChHHHHHHHHHhccC---CCCCCCCCCC----CHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHh
Q psy14428 182 VLPSVKEAERRIYEKN---LDHEYANIGG----DAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERF 254 (583)
Q Consensus 182 ~~~~v~~a~~~~~~~~---~~~~Y~~~~G----~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~ 254 (583)
+++.+.+++.+..... ....|....+ ..++|+.++++++. ++++|++ ++|+++++.++...+...
T Consensus 29 ~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ia~~~~~------~~~~v~~--~~~~t~~l~~~~~~~~~~ 100 (397)
T TIGR01976 29 IPQSVADAVSAALTRSNANRGGAYESSRRADQVVDDAREAVADLLNA------DPPEVVF--GANATSLTFLLSRAISRR 100 (397)
T ss_pred CCHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHcCC------CCCeEEE--eCCHHHHHHHHHHHHHhc
Confidence 5678888877766431 1123544444 35888888888753 3457988 999999988754444334
Q ss_pred CCCCCEEEEcCCCChhhH----HHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHH
Q psy14428 255 YPGVKTVYFPTPTWNGHV----RFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSED 330 (583)
Q Consensus 255 ~~~gd~Vlv~~P~y~~~~----~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~ 330 (583)
..+||+|++.+|.|.... ..++..|++++.+++ +++++.+|++.+++.+ .++++++++++|+||||.+++
T Consensus 101 ~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~l~~~i---~~~~~lv~i~~~~n~tG~~~~-- 174 (397)
T TIGR01976 101 WGPGDEVIVTRLDHEANISPWLQAAERAGAKVKWARV-DEATGELHPDDLASLL---SPRTRLVAVTAASNTLGSIVD-- 174 (397)
T ss_pred CCCCCEEEEcCCchHhHHHHHHHHHHhcCCEEEEEec-cccCCCcCHHHHHHhc---CCCceEEEEeCCCCCCCccCC--
Confidence 567999999999876543 456778999999998 5545678999998887 567899999999999999986
Q ss_pred HHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHH
Q psy14428 331 QWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERI 410 (583)
Q Consensus 331 ~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~l 410 (583)
+++|.++|+++|+++|+|+++.. +. ....+ .+ .+.-+++.|++|.+| .|+|++++ + +++
T Consensus 175 -~~~i~~~~~~~~~~~ivD~a~~~---~~---~~~~~---~~-~~~d~~~~s~~K~~g---~~~G~l~~--~-----~~~ 233 (397)
T TIGR01976 175 -LAAITELVHAAGALVVVDAVHYA---PH---GLIDV---QA-TGADFLTCSAYKFFG---PHMGILWG--R-----PEL 233 (397)
T ss_pred -HHHHHHHHHHcCCEEEEehhhhc---cc---cCCCH---HH-cCCCEEEEechhhcC---CceEEEEE--c-----HHH
Confidence 66778889999999999999742 11 11112 12 233456689999874 57999999 6 467
Q ss_pred HHHHHHH
Q psy14428 411 MSQLKIL 417 (583)
Q Consensus 411 i~~l~~~ 417 (583)
++.+...
T Consensus 234 ~~~l~~~ 240 (397)
T TIGR01976 234 LMNLPPY 240 (397)
T ss_pred HhhCCCc
Confidence 7776643
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase. |
| >PRK08861 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-16 Score=168.22 Aligned_cols=212 Identities=12% Similarity=0.118 Sum_probs=160.7
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHH----hhcC
Q psy14428 204 NIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFC----TDSR 279 (583)
Q Consensus 204 ~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~----~~~G 279 (583)
+..-...|++++|++.+ .+++++ |+|+++|+.++ +..++.+||.|+++.|+|......+ ...|
T Consensus 51 ~npt~~~Le~~lA~leg--------~e~ivv--t~gg~~Ai~~~---l~all~~Gd~Il~~~~~y~~~~~~~~~~~~~~g 117 (388)
T PRK08861 51 GNPNRGLLEQTLSELES--------GKGAVV--TNCGTSALNLW---VSALLGPDDLIVAPHDCYGGTYRLFNTRANKGD 117 (388)
T ss_pred CCchHHHHHHHHHHHhC--------CCeEEE--ECCHHHHHHHH---HHHHcCCCCEEEEcCCchHHHHHHHHHHHhcCC
Confidence 44557899999999986 378999 99999999985 3445667999999999998644333 3346
Q ss_pred CeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCC
Q psy14428 280 LNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGD 359 (583)
Q Consensus 280 ~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~ 359 (583)
++++.++. .|++.+++.+ .++++++++++|+||||.+++.+ +|.++|+++++++|+|++|....+..
T Consensus 118 i~v~~vd~-------~d~e~l~~~i---~~~tklV~lesP~NPtG~v~dl~---~I~~la~~~gi~vIvDea~~~~~~~~ 184 (388)
T PRK08861 118 FKVQFVDQ-------SDAAALDAAL---AKKPKLILLETPSNPLVRVVDIA---ELCQKAKAVGALVAVDNTFLTPVLQK 184 (388)
T ss_pred eEEEEECC-------CCHHHHHHhc---CcCCeEEEEECCCCCCCcccCHH---HHHHHHHHcCCEEEEECCccccccCC
Confidence 77766643 2778887776 56789999999999999999955 66778889999999999998654332
Q ss_pred CCCchHHHHHHHHhcCcEEEEecCccccccc-CccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhC
Q psy14428 360 FDKDAFSLRYFAKEVGQLCLAQSFSKNMGLY-GERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILS 438 (583)
Q Consensus 360 ~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~-GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~ 438 (583)
++ + .+--+++.|++|.++-+ +++.|++++ .+ +++.++++........+.+++..+.+..-++
T Consensus 185 ------pl----~-~GaDivv~S~tK~l~G~~d~~gG~i~~--~~----~~~~~~~~~~~~~~G~~~~p~~a~l~~rgl~ 247 (388)
T PRK08861 185 ------PL----E-LGADFVIHSTTKYINGHSDVIGGVLIT--KT----KEHAEELAWWGNCIGATGTPFDSYMTLRGIR 247 (388)
T ss_pred ------Cc----c-cCCCEEEeecceeccCCCcceeEEEEe--cH----HHHHHHHHHHHhccCCCCChHHHHHHHhcCC
Confidence 11 1 12348999999999754 578999988 54 4677888877777788889999998888888
Q ss_pred C--hhhhhhhhhHHHHHHHHHH
Q psy14428 439 D--PKLKAQCDETERIMSQLKI 458 (583)
Q Consensus 439 ~--~~~~~~~~~~~~~~~~l~~ 458 (583)
. -.+++|.++...+.+.++.
T Consensus 248 Tl~lR~~~~~~~a~~~a~~L~~ 269 (388)
T PRK08861 248 TLGARMRVHEESAQQILAYLQT 269 (388)
T ss_pred CHHHHHHHHHHHHHHHHHHHHh
Confidence 5 4567777776666665543
|
|
| >PRK02948 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1e-16 Score=169.78 Aligned_cols=189 Identities=12% Similarity=0.044 Sum_probs=134.5
Q ss_pred CChHHHHHHHHHhccCCCCCCC--C------CCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHH-
Q psy14428 182 VLPSVKEAERRIYEKNLDHEYA--N------IGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLE- 252 (583)
Q Consensus 182 ~~~~v~~a~~~~~~~~~~~~Y~--~------~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~- 252 (583)
+++.+.+++.+..+.. ..++. . ..-..++|+.+|++++ .++++|++ |+|+++++.++...+.
T Consensus 12 ~~~~v~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~la~~~g------~~~~~i~~--~~g~t~a~~~~~~~~~~ 82 (381)
T PRK02948 12 MSKEALQTYQKAASQY-FGNESSLHDIGGTASSLLQVCRKTFAEMIG------GEEQGIYF--TSGGTESNYLAIQSLLN 82 (381)
T ss_pred CCHHHHHHHHHHHHhc-CCCCccccHHHHHHHHHHHHHHHHHHHHhC------CCCCeEEE--eCcHHHHHHHHHHHHHH
Confidence 5677888877666431 11111 0 0114577788888775 35789999 9999999987633331
Q ss_pred HhCCCCCEEEEcCCC---ChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCH
Q psy14428 253 RFYPGVKTVYFPTPT---WNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSE 329 (583)
Q Consensus 253 ~~~~~gd~Vlv~~P~---y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~ 329 (583)
.+..+||.|++..+. |..+...++..|++++.+++ ++ ++.+|++.+++.+ .++++++++++|+||||.+++.
T Consensus 83 ~~~~~g~~vv~~~~~h~s~~~~~~~~~~~g~~v~~v~~-~~-~~~~d~~~l~~~l---~~~~~lv~~~~~~n~tG~~~~~ 157 (381)
T PRK02948 83 ALPQNKKHIITTPMEHASIHSYFQSLESQGYTVTEIPV-DK-SGLIRLVDLERAI---TPDTVLASIQHANSEIGTIQPI 157 (381)
T ss_pred hccCCCCEEEECCcccHHHHHHHHHHHhCCCEEEEEee-CC-CCCCCHHHHHHhc---CCCCEEEEEECCcCCcEeehhH
Confidence 122458999998844 45555567778999999998 53 3568999998877 4578899999999999999885
Q ss_pred HHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEE
Q psy14428 330 DQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSV 399 (583)
Q Consensus 330 ~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~ 399 (583)
++|.++|+++++++|+|++ ..+...+. .+ ...+..+++.|+||.+|.+| +|++++
T Consensus 158 ---~~I~~l~~~~~~~vivD~~-~~~g~~~~-----~~----~~~~~d~~~~s~~K~~gp~G--~G~l~~ 212 (381)
T PRK02948 158 ---AEIGALLKKYNVLFHSDCV-QTFGKLPI-----DV----FEMGIDSLSVSAHKIYGPKG--VGAVYI 212 (381)
T ss_pred ---HHHHHHHHHcCCEEEEECh-hhcccccc-----Cc----ccCCCCEEEecHHhcCCCCc--EEEEEE
Confidence 4678889999999999965 34432210 11 22356778999999999888 799998
|
|
| >PRK08574 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.7e-16 Score=167.56 Aligned_cols=192 Identities=16% Similarity=0.080 Sum_probs=141.0
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHh---hcCC
Q psy14428 204 NIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCT---DSRL 280 (583)
Q Consensus 204 ~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~---~~G~ 280 (583)
......+|++.+|++++. +++++ +++|++|+..+ +..+..+||+|+++.|+|..+...++ ..|+
T Consensus 51 ~np~~~~lE~~lA~l~g~--------~~~l~--~~sG~~Ai~~~---l~~ll~~GD~Vlv~~~~y~~~~~~~~~~~~~g~ 117 (385)
T PRK08574 51 ENPTLRPLEEALAKLEGG--------VDALA--FNSGMAAISTL---FFSLLKAGDRVVLPMEAYGTTLRLLKSLEKFGV 117 (385)
T ss_pred CCccHHHHHHHHHHHhCC--------CcEEE--eCCHHHHHHHH---HHHHhCCCCEEEEcCCCchhHHHHHHHhhccCc
Confidence 344578999999999863 46777 88899999875 33456679999999999998877664 4476
Q ss_pred eEEEEecccCCCCCCChhhHHHHHHcCCC-CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCC
Q psy14428 281 NVGAYRYFDNKTNGLDFAGMMEDIKAMPE-RSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGD 359 (583)
Q Consensus 281 ~~~~v~~~d~~~~g~d~~~l~~~l~~~~~-~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~ 359 (583)
++..+. +|++.+++.+ .+ +++++++++|+||||.+++. ++|+++|+++|++||+|++|..-....
T Consensus 118 ~v~~~~--------~d~~~l~~~i---~~~~tklV~ie~p~NPtG~v~dl---~~I~~la~~~gi~livD~t~a~~~~~~ 183 (385)
T PRK08574 118 KVVLAY--------PSTEDIIEAI---KEGRTKLVFIETMTNPTLKVIDV---PEVAKAAKELGAILVVDNTFATPLLYR 183 (385)
T ss_pred EEEEEC--------CCHHHHHHhc---CccCceEEEEECCCCCCCEecCH---HHHHHHHHHcCCEEEEECCCCccccCC
Confidence 665442 2567777776 44 78899999999999999984 577888999999999999985322111
Q ss_pred CCCchHHHHHHHHhcCcEEEEecCcccccccCccc-eEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhC
Q psy14428 360 FDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERV-GTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILS 438 (583)
Q Consensus 360 ~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRi-G~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~ 438 (583)
++ + .+..+++.|+||.++.+|-++ |++++ .+ +++.++++........+.+++..+.+..-++
T Consensus 184 ------~l----~-~GaDivv~S~sK~l~g~~d~~gG~vi~--~~----~~~~~~~~~~~~~~g~~~~p~~a~l~l~~l~ 246 (385)
T PRK08574 184 ------PL----R-HGADFVVHSLTKYIAGHNDVVGGVAVA--WS----GEFLEELWEWRRRLGTIMQPFEAYLVLRGLK 246 (385)
T ss_pred ------hh----h-hCCcEEEeeCceeecCCCCceeEEEEE--Cc----HHHHHHHHHHHHhcCCCCCHHHHHHHHcccC
Confidence 12 1 245689999999998788775 66666 43 4688888776665566667766666666555
Q ss_pred C
Q psy14428 439 D 439 (583)
Q Consensus 439 ~ 439 (583)
.
T Consensus 247 t 247 (385)
T PRK08574 247 T 247 (385)
T ss_pred c
Confidence 3
|
|
| >TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-16 Score=170.82 Aligned_cols=187 Identities=13% Similarity=0.025 Sum_probs=139.7
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhh----HHHHhhcCC
Q psy14428 205 IGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGH----VRFCTDSRL 280 (583)
Q Consensus 205 ~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~----~~~~~~~G~ 280 (583)
..-..+|++.+|++.+. +..++ +++|+.|+..+ +..++.+||+|++++|.|... ...++..|+
T Consensus 56 ~p~~~~le~~lA~l~g~--------~~~v~--~~sG~~Ai~~a---l~~l~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~ 122 (418)
T TIGR01326 56 NPTTDVLEQRIAALEGG--------VAALA--VASGQAAITYA---ILNLAQAGDNIVSSSYLYGGTYNLFKHTLKRLGI 122 (418)
T ss_pred ChhHHHHHHHHHHHhCC--------CeEEE--EccHHHHHHHH---HHHHhCCCCEEEEECCCcHHHHHHHHHHHHHcCc
Confidence 34468899999999853 34566 88888898875 334456799999999998654 344567899
Q ss_pred eEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCC
Q psy14428 281 NVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDF 360 (583)
Q Consensus 281 ~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~ 360 (583)
+++.++. + |++.+++.+ .++++++++++|+||||.+.+ +++|.++|+++++++|+|++|.......
T Consensus 123 ~v~~v~~-~------d~~~l~~~l---~~~t~~V~le~p~NPtg~v~d---l~~I~~la~~~~i~livD~t~~~~~~~~- 188 (418)
T TIGR01326 123 EVRFVDP-D------DPEEFEKAI---DENTKAVFAETIGNPAINVPD---IEAIAEVAHAHGVPLIVDNTFATPYLCR- 188 (418)
T ss_pred EEEEECC-C------CHHHHHHhc---CcCCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCchhhcCC-
Confidence 9988865 1 778888777 567889999999999999886 5677888999999999999996432111
Q ss_pred CCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHh
Q psy14428 361 DKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEIL 437 (583)
Q Consensus 361 ~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l 437 (583)
++ ..+..|++.|+||.++.+|+|+||+++ +++ .+.... ......+++...|.++...+
T Consensus 189 -----~l-----~~g~Divv~S~sK~l~g~G~~lGg~v~--~~~----~~~~~~---~~~~~~~~~~~~q~a~~~~~ 246 (418)
T TIGR01326 189 -----PI-----DHGADIVVHSATKYIGGHGTAIGGVIV--DGG----KFDWAN---GRFPLFTTPDPSYHGLVFTE 246 (418)
T ss_pred -----ch-----hcCCeEEEECccccccCCccceEEEEE--ecc----cccccc---cccccccCCCCccccchhhh
Confidence 11 135689999999999999999999999 532 222221 23456777888888877665
|
This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities. |
| >TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.74 E-value=2e-16 Score=167.14 Aligned_cols=190 Identities=15% Similarity=0.146 Sum_probs=140.8
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhh----HHHHhhcCC
Q psy14428 205 IGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGH----VRFCTDSRL 280 (583)
Q Consensus 205 ~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~----~~~~~~~G~ 280 (583)
..-..+|++.++++.+. +.+++ +++|+.|+..+ +..++++||+|+++.+.|... ...++..|+
T Consensus 53 ~p~~~~le~~la~l~g~--------~~~~~--~~sG~~Ai~~a---l~al~~~Gd~Vl~~~~~~~~t~~~~~~~~~~~g~ 119 (380)
T TIGR01325 53 NPTVAAFEERIAALEGA--------ERAVA--TATGMSAIQAA---LMTLLQAGDHVVASRSLFGSTVGFISEILPRFGI 119 (380)
T ss_pred CchHHHHHHHHHHHhCC--------CcEEE--ECCHHHHHHHH---HHHHhCCCCEEEEecCCcchHHHHHHHHHHHhCC
Confidence 33468999999998753 35677 88999999885 344566799999999988653 345677899
Q ss_pred eEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCC
Q psy14428 281 NVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDF 360 (583)
Q Consensus 281 ~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~ 360 (583)
+++.+++ + |++.+++.+ .++++++++++|+||+|.+.+ +++|.++|+++|+++|+|++|.......
T Consensus 120 ~v~~v~~-~------d~~~l~~~i---~~~tklV~le~p~np~g~~~d---l~~I~~la~~~gi~livD~a~~~~~~~~- 185 (380)
T TIGR01325 120 EVSFVDP-T------DLNAWEAAV---KPNTKLVFVETPSNPLGELVD---IAALAELAHAIGALLVVDNVFATPVLQQ- 185 (380)
T ss_pred EEEEECC-C------CHHHHHHhc---CCCceEEEEECCCCCCCeeeC---HHHHHHHHHHcCCEEEEECCCcccccCC-
Confidence 9988876 2 677777766 567899999999999999886 5677888899999999999998654332
Q ss_pred CCchHHHHHHHHhcCcEEEEecCcccccccCccc-eEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhC
Q psy14428 361 DKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERV-GTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILS 438 (583)
Q Consensus 361 ~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRi-G~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~ 438 (583)
++ + .+..|++.|+||.++.+|.++ |++++ + +++++.++..........+++..+++..-++
T Consensus 186 -----pl----~-~g~Divv~S~sK~l~g~g~~~gG~vv~--~-----~~~~~~l~~~~~~~g~~~~p~~a~~~l~~l~ 247 (380)
T TIGR01325 186 -----PL----K-LGADVVVYSATKHIDGQGRVMGGVIAG--S-----EELMAEVAVYLRHTGPAMSPFNAWVLLKGLE 247 (380)
T ss_pred -----ch----h-hCCCEEEeeccceecCCCCeEEEEEEe--C-----HHHHHHHHHHHHhhCCCCCHHHHHHHHhccC
Confidence 12 1 134578889999999889988 66666 5 4678888776655555556666555555444
|
This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis. |
| >PRK07810 O-succinylhomoserine sulfhydrylase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.1e-16 Score=167.70 Aligned_cols=210 Identities=11% Similarity=0.033 Sum_probs=152.9
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcC----CCChhhHHHHhhcC
Q psy14428 204 NIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPT----PTWNGHVRFCTDSR 279 (583)
Q Consensus 204 ~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~----P~y~~~~~~~~~~G 279 (583)
+.....+|++.+|++.+. ++.++ +++|+.|+..+ +..+.++||+|+++. |+|..+...++..|
T Consensus 68 ~~p~~~~le~~lA~l~g~--------~~al~--~~sG~~Ai~~~---l~all~~Gd~Vl~~~~~~~~t~~~~~~~~~~~G 134 (403)
T PRK07810 68 GNPTVSMFEERLRLIEGA--------EACFA--TASGMSAVFTA---LGALLGAGDRLVAARSLFGSCFVVCNEILPRWG 134 (403)
T ss_pred CCchHHHHHHHHHHHhCC--------CcEEE--ECChHHHHHHH---HHHHhCCCCEEEEccCCcchHHHHHHHHHHHcC
Confidence 344478999999999863 35566 77888888874 334566799999887 44555666778889
Q ss_pred CeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCC
Q psy14428 280 LNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGD 359 (583)
Q Consensus 280 ~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~ 359 (583)
++++.++. . |++.+++++ .++++++++++|+||||.+.+ +++|.++|+++++++|+|++|....+..
T Consensus 135 ~~v~~vd~---~----d~~~l~~ai---~~~tklV~~esp~Nptg~v~d---l~~I~~la~~~g~~vivD~a~a~~~~~~ 201 (403)
T PRK07810 135 VETVFVDG---E----DLSQWEEAL---SVPTQAVFFETPSNPMQSLVD---IAAVSELAHAAGAKVVLDNVFATPLLQR 201 (403)
T ss_pred cEEEEECC---C----CHHHHHHhc---CcCceEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCCccccCC
Confidence 99988864 1 778888877 567899999999999998886 6677888999999999999997654432
Q ss_pred CCCchHHHHHHHHhcCcEEEEecCcccccccCccc-eEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhC
Q psy14428 360 FDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERV-GTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILS 438 (583)
Q Consensus 360 ~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRi-G~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~ 438 (583)
++ + .+.-+++.|++|.++.+|.++ |++++ ++ +.+-++++...+....+.+.+.++++..-++
T Consensus 202 ------~~----~-~gaDivv~S~tK~l~g~g~~~gG~v~~--~~----~~~~~~l~~~~~~~g~~~s~~~a~l~l~~L~ 264 (403)
T PRK07810 202 ------GL----P-LGADVVVYSGTKHIDGQGRVLGGAILG--DR----EYIDGPVQKLMRHTGPALSAFNAWVLLKGLE 264 (403)
T ss_pred ------hh----h-cCCcEEEccCCceecCCcCceeEEEEe--Ch----HHHHHHHHHHHHHhCCCCCHHHHHHHHhccC
Confidence 11 1 134688999999998899998 77776 52 2233356555556667889999998888887
Q ss_pred C--hhhhhhhhhHHHHHHHH
Q psy14428 439 D--PKLKAQCDETERIMSQL 456 (583)
Q Consensus 439 ~--~~~~~~~~~~~~~~~~l 456 (583)
. ..++++.+...++.+.+
T Consensus 265 tl~~R~~~~~~~a~~~a~~L 284 (403)
T PRK07810 265 TLALRVRHSNASALRIAEFL 284 (403)
T ss_pred cHHHHHHHHHHHHHHHHHHH
Confidence 4 34555555544444444
|
|
| >PRK07582 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.9e-16 Score=166.38 Aligned_cols=208 Identities=15% Similarity=0.059 Sum_probs=148.6
Q ss_pred CCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHH----hhc
Q psy14428 203 ANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFC----TDS 278 (583)
Q Consensus 203 ~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~----~~~ 278 (583)
.+......|++++|++. . ++.|+ +++|+.|+..+ +..++++||+|++++|+|..+...+ +..
T Consensus 48 y~~p~~~~Le~~lA~l~-~-------~~~v~---~~sG~~Ai~~~---l~all~~Gd~Vl~~~~~y~~~~~~~~~~l~~~ 113 (366)
T PRK07582 48 ASNPTWRALEAALGELE-G-------AEALV---FPSGMAAITAV---LRALLRPGDTVVVPADGYYQVRALAREYLAPL 113 (366)
T ss_pred CCCccHHHHHHHHHHHc-C-------CCEEE---ECCHHHHHHHH---HHHhcCCCCEEEEeCCCcHhHHHHHHHHHhcC
Confidence 36677899999999987 1 24444 45556788874 3445677999999999998887654 457
Q ss_pred CCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCC
Q psy14428 279 RLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSG 358 (583)
Q Consensus 279 G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~ 358 (583)
|++++.++. +++ .+ .+ .++++++++++|+||||.+.+ +++|+++|+++++++|+|++|.... +
T Consensus 114 G~~v~~v~~-~~~-----~~----~~---~~~t~lV~le~p~NPtg~v~d---i~~I~~~a~~~g~~lvVD~t~~~~~-~ 176 (366)
T PRK07582 114 GVTVREAPT-AGM-----AE----AA---LAGADLVLAETPSNPGLDVCD---LAALAAAAHAAGALLVVDNTTATPL-G 176 (366)
T ss_pred eEEEEEECC-CCh-----HH----Hh---ccCceEEEEECCCCCCCCccC---HHHHHHHHHHcCCEEEEECCCCCcc-c
Confidence 999998887 321 11 12 357889999999999997765 7778889999999999999996421 1
Q ss_pred CCCCchHHHHHHHHhcCcEEEEecCccccc-ccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHh
Q psy14428 359 DFDKDAFSLRYFAKEVGQLCLAQSFSKNMG-LYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEIL 437 (583)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~-l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l 437 (583)
. . ++ +. +.-++++|+||.++ .+|+|+||+++ ++ +++++++.........+.+++.++.+...+
T Consensus 177 ~---~--p~----~~-g~Divv~S~sK~l~G~~g~~~G~v~~--~~----~~l~~~l~~~~~~~g~~~~~~~a~l~~r~l 240 (366)
T PRK07582 177 Q---R--PL----EL-GADLVVASDTKALTGHSDLLLGYVAG--RD----PELMAAVERWRLLAGAIPGPFEAWLAHRSL 240 (366)
T ss_pred c---C--ch----hc-CCcEEEecccccccCCCCeeEEEEEc--Cc----HHHHHHHHHHHHHhCCCCCHHHHHHHHhcc
Confidence 1 1 12 11 22378899999984 46799999998 54 478888888777777788899999888888
Q ss_pred CCh--hhhhhhhhHHHHHHHHH
Q psy14428 438 SDP--KLKAQCDETERIMSQLK 457 (583)
Q Consensus 438 ~~~--~~~~~~~~~~~~~~~l~ 457 (583)
..- .++++.++...+.+.++
T Consensus 241 ~tl~~R~~~~~~na~~la~~L~ 262 (366)
T PRK07582 241 GTLGLRFARQCANALAVAELLA 262 (366)
T ss_pred ccHHHHHHHHHHHHHHHHHHHH
Confidence 753 33444444444444443
|
|
| >PRK07179 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.5e-15 Score=162.43 Aligned_cols=216 Identities=14% Similarity=0.082 Sum_probs=147.8
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhcc---CC---CCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEE
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEK---NL---DHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAI 234 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~---~~---~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i 234 (583)
.+...++++...+-+- . ..|.+.+++.+.+++ +. ...+....-..+|++.+|++++. +.+++
T Consensus 52 ~g~~~~~~~~~~YL~l-~---~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g~--------~~~~~ 119 (407)
T PRK07179 52 PGPDAIILQSNDYLNL-S---GHPDIIKAQIAALQEEGDSLVMSAVFLHDDSPKPQFEKKLAAFTGF--------ESCLL 119 (407)
T ss_pred CCCcEEEeecCCccCC-C---CCHHHHHHHHHHHHHhCCCCCccccccCCchHHHHHHHHHHHHhCC--------CcEEE
Confidence 3456677766554321 1 235667766665543 11 11112223457888999998752 45677
Q ss_pred EecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEE
Q psy14428 235 VQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILF 314 (583)
Q Consensus 235 ~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i 314 (583)
++||++|...+ +..+..+||.|++..+.+......++..|++++.++. .|++.+++.+.. .+++++
T Consensus 120 --~~sG~~An~~~---l~~l~~~g~~v~~~~~~h~s~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~--~~~~lV 185 (407)
T PRK07179 120 --CQSGWAANVGL---LQTIADPNTPVYIDFFAHMSLWEGVRAAGAQAHPFRH-------NDVDHLRRQIER--HGPGII 185 (407)
T ss_pred --ECCHHHHHHHH---HHHhCCCCCEEEEECCcCHHHHHHHHHCCCeEEEecC-------CCHHHHHHHHHh--cCCeEE
Confidence 89999999874 5556677999999999888887777888888765532 288889888842 246788
Q ss_pred EeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCc-EEEEecCcccccccCcc
Q psy14428 315 LQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQ-LCLAQSFSKNMGLYGER 393 (583)
Q Consensus 315 ~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~-vi~i~S~SK~~~l~GlR 393 (583)
++++++||||.+.+ +++|.++|+++|+++|+||+|....++. .....+..+ +...+ .+++.|+||.+| .|
T Consensus 186 ~v~~v~n~tG~i~p---l~~I~~l~~~~~~~livDea~~~g~~g~--~g~g~~~~~-~~~~~vdi~~~S~sK~~g---~~ 256 (407)
T PRK07179 186 VVDSVYSTTGTIAP---LADIVDIAEEFGCVLVVDESHSLGTHGP--QGAGLVAEL-GLTSRVHFITASLAKAFA---GR 256 (407)
T ss_pred EECCCCCCCCcccc---HHHHHHHHHHcCCEEEEECcccccCcCC--CCCchHHhc-CCCCCCCEEEeechHhhh---cc
Confidence 89999999999999 4677888999999999999997544432 111122222 21123 488999999986 37
Q ss_pred ceEEEEEcCCchhHHHHHHHHHHHH
Q psy14428 394 VGTFSVLTPTSDETERIMSQLKILI 418 (583)
Q Consensus 394 iG~lv~~~p~~~~~~~li~~l~~~~ 418 (583)
+||+++ + +++++.+....
T Consensus 257 ~G~l~~--~-----~~~~~~~~~~~ 274 (407)
T PRK07179 257 AGIITC--P-----RELAEYVPFVS 274 (407)
T ss_pred CeEEEe--C-----HHHHHHHHHhC
Confidence 999998 6 46777776543
|
|
| >TIGR01328 met_gam_lyase methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.9e-16 Score=166.27 Aligned_cols=190 Identities=13% Similarity=0.049 Sum_probs=136.0
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhh----HHHHhhcCCe
Q psy14428 206 GGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGH----VRFCTDSRLN 281 (583)
Q Consensus 206 ~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~----~~~~~~~G~~ 281 (583)
.-...|++++|++.+.. ..++ +++|+.|+.++ +..+..+||.|+++.|.|... ...+...|++
T Consensus 59 p~~~~le~~lA~l~g~~--------~av~--~~sG~~Ai~~~---l~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~ 125 (391)
T TIGR01328 59 PTVSNLEGRIAFLEGTE--------AAVA--TSSGMGAIAAT---LLTILKAGDHLISDECLYGCTFALLEHALTKFGIQ 125 (391)
T ss_pred chHHHHHHHHHHHhCCC--------cEEE--ECCHHHHHHHH---HHHHhCCCCEEEEecCcchHHHHHHHHHHhcCCeE
Confidence 34567999999998742 3455 77778888874 344566799999999987644 3445667988
Q ss_pred EEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCC
Q psy14428 282 VGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFD 361 (583)
Q Consensus 282 ~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~ 361 (583)
++.+++ + |++.+++.+ .++++++++++|+||||.+.+ +++|+++|+++|+++|+|++|.......
T Consensus 126 ~~~vd~-~------d~e~l~~~i---~~~tklV~le~p~Np~G~v~d---l~~I~~la~~~gi~livD~a~a~~~~~~-- 190 (391)
T TIGR01328 126 VDFINM-A------IPEEVKAHI---KDNTKIVYFETPANPTMKLID---MERVCRDAHSQGVKVIVDNTFATPMLTN-- 190 (391)
T ss_pred EEEECC-C------CHHHHHHhh---ccCCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCchhccCC--
Confidence 888876 2 677887777 567899999999999999987 5567888899999999999997654321
Q ss_pred CchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhc--cccCCChHHHHHHHHHhC
Q psy14428 362 KDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRG--FYSNPPIHGARIVTEILS 438 (583)
Q Consensus 362 ~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~--~~~~~s~~~q~~~~~~l~ 438 (583)
++ +. +.-+++.|+||.++.+|.|+|.+++ .+ ++++++++..... .....+.+..+++..-++
T Consensus 191 ----~~----~~-g~Divv~S~sK~lgg~g~~~gG~v~--~~----~~li~~l~~~~~~~~~g~~l~~~~a~l~l~~L~ 254 (391)
T TIGR01328 191 ----PV----AL-GVDVVVHSATKYIGGHGDVVAGLIC--GK----AELLQQIRMVGIKDMTGSVISPFDAWLILRGLK 254 (391)
T ss_pred ----ch----hc-CCCEEEccccccccCCCCceEEEEE--cC----HHHHHHHHHHHHHhCCCCCCCcHHHHHHHhCcC
Confidence 11 11 2348889999999999998654444 23 4788888754322 233456666666655554
|
This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine. |
| >PRK04073 rocD ornithine--oxo-acid transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1e-15 Score=162.89 Aligned_cols=282 Identities=13% Similarity=0.120 Sum_probs=171.5
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCC-CCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCC
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNL-DHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGIS 239 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~-~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G 239 (583)
.+...+|+..|.+....|.- .|.+.+++.+.++... ...+....-..+|.+.++++. + .+++++ +++
T Consensus 38 ~G~~~lD~~~g~~~~~lGh~--~p~v~~ai~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~----~~~~~~--~~S 105 (396)
T PRK04073 38 EGNRYMDMLSAYSAVNQGHR--HPKIIQALKDQADKVTLTSRAFHSDQLGPWYEKVAKLT----G----KDMVLP--MNT 105 (396)
T ss_pred CCCEEEEcCCCHHhccCCCC--CHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHhcC----C----CCeEEE--cCC
Confidence 35567888777665555543 4677777766665411 111111222234444444432 1 368888 999
Q ss_pred chhHHHHHHHHHHHhC-------CCCCEEEEcCCCChhhH-HHHhhcCCe------------EEEEecccCCCCCCChhh
Q psy14428 240 GSGSLRVGTAFLERFY-------PGVKTVYFPTPTWNGHV-RFCTDSRLN------------VGAYRYFDNKTNGLDFAG 299 (583)
Q Consensus 240 ~~~al~l~~~~l~~~~-------~~gd~Vlv~~P~y~~~~-~~~~~~G~~------------~~~v~~~d~~~~g~d~~~ 299 (583)
|++|.+.+..+.+... ...++|+..+-+|.... ......+.. +..+|. + |++.
T Consensus 106 GseA~e~Alk~a~~~~~~~~g~~~~r~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-d~~~ 178 (396)
T PRK04073 106 GAEAVETAIKAARRWAYDVKGVEPNKAEIIACEGNFHGRTMAAVSLSSEEEYKRGFGPMLPGIKKIPY------G-DLEA 178 (396)
T ss_pred hHHHHHHHHHHHHHHhhhccCCCCCCCEEEEECCCcCCCCHHHHhhcCCcccccCCCCCCCCceEeCC------C-CHHH
Confidence 9999998755544331 22367887777766543 222222211 122222 1 6777
Q ss_pred HHHHHHcCCCCcEEEEeCCCCCCCCCCCCHH-HHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEE
Q psy14428 300 MMEDIKAMPERSILFLQTSSHNPTGVDLSED-QWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLC 378 (583)
Q Consensus 300 l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~-~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi 378 (583)
+++.+ .++++++++++++||||.+++++ .+++|.++|+++|+++|.||+|.+|...+ ..... ...+....
T Consensus 179 l~~~i---~~~~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g---~~~~~-~~~~~~pd-- 249 (396)
T PRK04073 179 LKAAI---TPNTAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTG---KLFAC-DWDNVTPD-- 249 (396)
T ss_pred HHHhc---ccCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhCCCcCc---HHHHh-hhcCCCCC--
Confidence 77766 45788999999999999998765 69999999999999999999999986654 11111 11111222
Q ss_pred EEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhC---ChhhhhhhhhHHH-HHH
Q psy14428 379 LAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILS---DPKLKAQCDETER-IMS 454 (583)
Q Consensus 379 ~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~-~~~ 454 (583)
+.+|||.+|++|+|+||+++ + +++++.+........++.+++.|.++.+.|+ +..+.++..+... +.+
T Consensus 250 -i~~~sK~lg~gg~~ig~~~~--~-----~~i~~~~~~~~~~~t~~~~~~~~aaa~aaL~~~~~~~l~~~~~~~~~~l~~ 321 (396)
T PRK04073 250 -MYILGKALGGGVFPISCVAA--N-----RDILGVFTPGSHGSTFGGNPLACAVSIAALEVLEEEKLPERSLELGEYFKE 321 (396)
T ss_pred -EEEecccccCCCCcceEEEE--c-----HHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 44689999988899999999 6 5788888655445566788999998888875 3334333333222 222
Q ss_pred HHHHHHhhccCCCccchhhHHHHh
Q psy14428 455 QLKILIRGFYSNPPIHGARIVTEI 478 (583)
Q Consensus 455 ~l~~~~r~~~~~~p~~g~~i~~~~ 478 (583)
.++.+-...+...+..|.+++..+
T Consensus 322 ~L~~l~~~~i~~~~~~g~~~~~~~ 345 (396)
T PRK04073 322 QLKEIDNPMIKEVRGRGLFIGVEL 345 (396)
T ss_pred HHHhhcCCcccceecceEEEEEEe
Confidence 222221012233345566666554
|
|
| >PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.5e-16 Score=166.34 Aligned_cols=199 Identities=13% Similarity=0.095 Sum_probs=143.5
Q ss_pred CChHHHHHHHHHhccCCCC----CCC----CCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHH-
Q psy14428 182 VLPSVKEAERRIYEKNLDH----EYA----NIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLE- 252 (583)
Q Consensus 182 ~~~~v~~a~~~~~~~~~~~----~Y~----~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~- 252 (583)
+++.+.+++.+........ .|. -..-..++|+++|++++. .++++|++ |+|+++++.++...+.
T Consensus 35 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~-----~~~~~v~~--t~g~t~~l~~~~~~~~~ 107 (406)
T PRK09295 35 KPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKQAALFINA-----RSAEELVF--VRGTTEGINLVANSWGN 107 (406)
T ss_pred CCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHcCc-----CCCCeEEE--eCCHHHHHHHHHHHhhh
Confidence 5677888877666431000 110 011256889999998863 15689999 9999999998643321
Q ss_pred HhCCCCCEEEEcCCCChh----hHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCC
Q psy14428 253 RFYPGVKTVYFPTPTWNG----HVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLS 328 (583)
Q Consensus 253 ~~~~~gd~Vlv~~P~y~~----~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s 328 (583)
.+..+||+|+++++.|+. +...++..|++++.+++ +. ++.+|++.+++.+ .++++++++++|+||||.+++
T Consensus 108 ~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~-~~-~~~~d~~~l~~~i---~~~t~lv~l~~~~n~tG~~~~ 182 (406)
T PRK09295 108 SNVRAGDNIIISEMEHHANIVPWQMLCARVGAELRVIPL-NP-DGTLQLETLPALF---DERTRLLAITHVSNVLGTENP 182 (406)
T ss_pred hcCCCcCEEEECcchhhHHHHHHHHHHHHcCcEEEEEec-CC-CCCCCHHHHHHhc---CCCcEEEEEecchhcccccCC
Confidence 245679999999987653 45566778999999998 43 3568999998877 567899999999999999998
Q ss_pred HHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHH
Q psy14428 329 EDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETE 408 (583)
Q Consensus 329 ~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~ 408 (583)
. ++|.++|+++++++|+|++|...... ..+. ..+..+++.|++|.+|.+| +||+++ + +
T Consensus 183 ~---~~i~~~~~~~~~~vivD~a~~~g~~~------~~~~----~~~~D~~~~s~~K~~gp~G--~G~l~~--~-----~ 240 (406)
T PRK09295 183 L---AEMIALAHQHGAKVLVDGAQAVMHHP------VDVQ----ALDCDFYVFSGHKLYGPTG--IGILYV--K-----E 240 (406)
T ss_pred H---HHHHHHHHHcCCEEEEEcccccCccc------cCch----hcCCCEEEeehhhccCCCC--cEEEEE--c-----h
Confidence 4 56788899999999999998654321 1121 1234588899999888666 799999 6 3
Q ss_pred HHHHHH
Q psy14428 409 RIMSQL 414 (583)
Q Consensus 409 ~li~~l 414 (583)
++++.+
T Consensus 241 ~~~~~~ 246 (406)
T PRK09295 241 ALLQEM 246 (406)
T ss_pred HhHhhC
Confidence 565554
|
|
| >cd06453 SufS_like Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Probab=99.73 E-value=3e-16 Score=165.71 Aligned_cols=200 Identities=13% Similarity=0.099 Sum_probs=143.1
Q ss_pred CCCChHHHHHHHHHhccCCC--C----CCC--CCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHH
Q psy14428 180 PYVLPSVKEAERRIYEKNLD--H----EYA--NIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFL 251 (583)
Q Consensus 180 p~~~~~v~~a~~~~~~~~~~--~----~Y~--~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l 251 (583)
+.+++.+.+++.+.+..... . .+. -..+..++|+.++++++.. ++++|++ |+|+++++.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-----~~~~v~~--~~g~t~a~~~~~--- 78 (373)
T cd06453 9 SQKPQPVIDAIVDYYRHYNANVHRGVHELSARATDAYEAAREKVARFINAP-----SPDEIIF--TRNTTEAINLVA--- 78 (373)
T ss_pred cCCCHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCC-----CCCeEEE--eCCHHHHHHHHH---
Confidence 33567788887666543100 0 000 1133567889999988632 3679999 999999999863
Q ss_pred HHhCC---CCCEEEEcCCCChhh----HHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCC
Q psy14428 252 ERFYP---GVKTVYFPTPTWNGH----VRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTG 324 (583)
Q Consensus 252 ~~~~~---~gd~Vlv~~P~y~~~----~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG 324 (583)
..+.. +||+|++++|+|+.. ....+..|++++.+++ + +++.+|++.+++.+ .++++++++++|+||||
T Consensus 79 ~~l~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~-~-~~~~~d~~~l~~~l---~~~~~~v~~~~~~~~tG 153 (373)
T cd06453 79 YGLGRANKPGDEIVTSVMEHHSNIVPWQQLAERTGAKLKVVPV-D-DDGQLDLEALEKLL---TERTKLVAVTHVSNVLG 153 (373)
T ss_pred HHhhhcCCCCCEEEECcchhHHHHHHHHHHHhhcCcEEEEeec-C-CCCCcCHHHHHHHh---cCCceEEEEeCcccccC
Confidence 33333 699999999998874 3345578999999998 5 34678999999988 45788999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCc
Q psy14428 325 VDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTS 404 (583)
Q Consensus 325 ~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~ 404 (583)
.+.+. ++|+++|++++++|++|++|...... ..+. ..+..+++.|++|.++. .++||+++ +
T Consensus 154 ~~~~~---~~i~~~~~~~~~~li~D~a~~~~~~~------~~~~----~~~~d~~~~s~~K~~~~--~g~g~~~~--~-- 214 (373)
T cd06453 154 TINPV---KEIGEIAHEAGVPVLVDGAQSAGHMP------VDVQ----DLGCDFLAFSGHKMLGP--TGIGVLYG--K-- 214 (373)
T ss_pred CcCCH---HHHHHHHHHcCCEEEEEhhhhcCcee------eecc----ccCCCEEEeccccccCC--CCcEEEEE--c--
Confidence 99985 56788889999999999998633211 0111 11234666788899984 67899998 6
Q ss_pred hhHHHHHHHHHH
Q psy14428 405 DETERIMSQLKI 416 (583)
Q Consensus 405 ~~~~~li~~l~~ 416 (583)
+++++++..
T Consensus 215 ---~~~~~~~~~ 223 (373)
T cd06453 215 ---EELLEEMPP 223 (373)
T ss_pred ---hHHhhcCCC
Confidence 467776664
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. |
| >cd06450 DOPA_deC_like DOPA decarboxylase family | Back alignment and domain information |
|---|
Probab=99.72 E-value=1e-16 Score=167.29 Aligned_cols=239 Identities=12% Similarity=0.006 Sum_probs=172.1
Q ss_pred ChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHH-hCC-----
Q psy14428 183 LPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLER-FYP----- 256 (583)
Q Consensus 183 ~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~-~~~----- 256 (583)
+..+.+.+....... ...|....+..++++++++++.+..|.+.+++++++ |+|+++|+.++...+.. ..+
T Consensus 12 ~~~~~~~~~~~~n~~-~~~y~~~~~~~~le~~~~~~~~~~~g~~~~~~~~~~--t~ggt~a~~~al~~~~~~~~~~~~~~ 88 (345)
T cd06450 12 PALLLEMLTSAKNAI-DFTWDESPAATEMEAEVVNWLAKLFGLPSEDADGVF--TSGGSESNLLALLAARDRARKRLKAG 88 (345)
T ss_pred HHHHHHHHHHhcCCC-CcccccCchhHHHHHHHHHHHHHHhCCCCCCCCEEE--eCChhHHHHHHHHHHHHHhhhhhhcc
Confidence 345555555555433 345888999999999999999888777655678999 99999999987444322 111
Q ss_pred ---C--CCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHc---CCCCcEEEEeCCCCCCCCCCCC
Q psy14428 257 ---G--VKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKA---MPERSILFLQTSSHNPTGVDLS 328 (583)
Q Consensus 257 ---~--gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~---~~~~~~~i~i~~p~NPTG~~~s 328 (583)
+ ++.|++++++|..+...++..|.+++.+|+ +++ +.+|++.+++.+.+ ...+++++++++|+||||.+.
T Consensus 89 ~~~~~~~~~v~~~~~~h~~~~~~~~~~g~~~~~v~~-~~~-~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~- 165 (345)
T cd06450 89 GGRGIDKLVIVCSDQAHVSVEKAAAYLDVKVRLVPV-DED-GRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAID- 165 (345)
T ss_pred cccccCCeEEEEcCcchhHHHHHHHHHhcCeEEeee-CCC-CCcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCC-
Confidence 2 348889999999998888888999999998 554 58899999998854 122678888999999999874
Q ss_pred HHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcE-EEEecCcccccccCccceEEEEEcCCchhH
Q psy14428 329 EDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQL-CLAQSFSKNMGLYGERVGTFSVLTPTSDET 407 (583)
Q Consensus 329 ~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~v-i~i~S~SK~~~l~GlRiG~lv~~~p~~~~~ 407 (583)
++++|+++|+++|+++++|++|..+..... ..... ....+++ .+..|++|.++ ++.++|++++
T Consensus 166 --~~~~i~~~~~~~~~~l~vD~a~~~~~~~~~--~~~~~---~~~~~~~d~~~~s~~K~l~-~p~g~g~~~~-------- 229 (345)
T cd06450 166 --PLEEIADLAEKYDLWLHVDAAYGGFLLPFP--EPRHL---DFGIERVDSISVDPHKYGL-VPLGCSAVLV-------- 229 (345)
T ss_pred --CHHHHHHHHHHhCCeEEEechhhHHHhhCh--hhHHH---hcCccccCEEEEchhHhhC-CCcchHHHHH--------
Confidence 477888999999999999999988775321 11111 1111233 45679999775 7788898776
Q ss_pred HHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHh
Q psy14428 408 ERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIR 461 (583)
Q Consensus 408 ~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r 461 (583)
. .+.++++...+....+++..++..+..+.+.+.++
T Consensus 230 ~------------------~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~ 265 (345)
T cd06450 230 R------------------ALKLWATLRRFGRDGYGEHIDRIVDLAKYLAELIR 265 (345)
T ss_pred H------------------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 55667777777766677666666655555555444
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. |
| >PLN02409 serine--glyoxylate aminotransaminase | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.4e-15 Score=162.12 Aligned_cols=203 Identities=12% Similarity=0.003 Sum_probs=146.1
Q ss_pred CChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEE
Q psy14428 182 VLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTV 261 (583)
Q Consensus 182 ~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~V 261 (583)
.++.+.+++.... .+|. ..+..++++.+.+.+.+.+|.. ..+.+++ ++++++++..+ +..+.++||+|
T Consensus 20 ~~~~V~~a~~~~~-----~~~~-~~~~~~~~~~~~~~l~~~~g~~-~~~~vi~--~~~gt~a~~~a---~~~~~~~Gd~V 87 (401)
T PLN02409 20 IPERVLRAMNRPN-----EDHR-SPAFPALTKELLEDVKYIFKTK-SGTPFIF--PTTGTGAWESA---LTNTLSPGDKV 87 (401)
T ss_pred CCHHHHHHhcCCC-----CCCC-CHHHHHHHHHHHHHHHHHhCCC-CCCEEEE--eCCcHHHHHHH---HHhcCCCCCEE
Confidence 5577777654321 2222 4467888888888887766653 2235666 77889998874 34456679999
Q ss_pred EEcCCCChhh--HHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCC-CCcEEEEeCCCCCCCCCCCCHHHHHHHHHH
Q psy14428 262 YFPTPTWNGH--VRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMP-ERSILFLQTSSHNPTGVDLSEDQWRQLAVV 338 (583)
Q Consensus 262 lv~~P~y~~~--~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~-~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~ 338 (583)
++.+|.|... ...++..|++++.++. +.+ .++|++.+++.+...+ ++++++++++++||||.+++.+++.++++
T Consensus 88 lv~~~~~~~~~~~~~~~~~g~~v~~v~~-~~~-~~~~~~~l~~~l~~~~~~~~k~v~~~~~~~~tG~~~~~~~i~~l~~- 164 (401)
T PLN02409 88 VSFRIGQFSLLWIDQMQRLNFDVDVVES-PWG-QGADLDILKSKLRQDTNHKIKAVCVVHNETSTGVTNDLAGVRKLLD- 164 (401)
T ss_pred EEeCCCchhHHHHHHHHHcCCceEEEEC-CCC-CCCCHHHHHHHHhhCcCCCccEEEEEeecccccccCCHHHHHHHHh-
Confidence 9999988554 5677888999999998 433 4689999999885421 37889999999999999999888888877
Q ss_pred HHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHH
Q psy14428 339 VKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKIL 417 (583)
Q Consensus 339 a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~ 417 (583)
|+++|+++|+|+++.--.. ++. .+..+.-+++.|.+|.++.|. ++||+++ + +++++++...
T Consensus 165 ~~~~g~~~vvD~v~s~g~~--------~id--~~~~~~D~~~~s~~K~l~~P~-G~G~l~~--~-----~~~~~~~~~~ 225 (401)
T PLN02409 165 CAQHPALLLVDGVSSIGAL--------DFR--MDEWGVDVALTGSQKALSLPT-GLGIVCA--S-----PKALEASKTA 225 (401)
T ss_pred hhccCcEEEEEcccccCCc--------ccc--ccccCccEEEEcCccccCcCC-CcceeEE--C-----HHHHHHHhcC
Confidence 9999999999999762111 110 112233467777799997544 7999999 6 5777777653
|
|
| >TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.4e-15 Score=156.36 Aligned_cols=197 Identities=13% Similarity=0.113 Sum_probs=136.7
Q ss_pred CChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEE
Q psy14428 182 VLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTV 261 (583)
Q Consensus 182 ~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~V 261 (583)
+++.+++++....... ...|. .-...+|+.++++++. +-+...|++ +.|+++++..+ +..+.+++|+|
T Consensus 10 ~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~la~~~~~----~~~~~~i~~--~~~gt~~l~~~---~~~~~~~~~~v 77 (355)
T TIGR03301 10 TSATVRDAMLVDWCHW-DSEFN--DVTDQVRDRLLALAGG----DDNHTCVLL--QGSGTFAVEAT---IGSLVPRDGKL 77 (355)
T ss_pred CCHHHHHHhhhhccCC-CHHHH--HHHHHHHHHHHHHhcC----CCCCcEEEE--eCCcHHHHHHH---HHhccCCCCeE
Confidence 5678888876622110 11232 2356778888887753 212236778 99999999985 44555567776
Q ss_pred EEcCC-CChh-hHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHH
Q psy14428 262 YFPTP-TWNG-HVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVV 339 (583)
Q Consensus 262 lv~~P-~y~~-~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a 339 (583)
++.++ .|+. +...++..|.+++.+++ +. ++++|++.+++.+.+ .++.+++++++++||||...+ +++|+++|
T Consensus 78 i~~~~~~~~~~~~~~a~~~g~~~~~i~~-~~-~~~~d~~~l~~~l~~-~~~~~~v~~~~~~~~~G~~~~---~~~i~~l~ 151 (355)
T TIGR03301 78 LVLINGAYGERLAKICEYLGIPHTDLNF-SE-YEPPDLNRIEEALAA-DPDITHVATVHHETTTGILNP---LEAIAKVA 151 (355)
T ss_pred EEECCCchhhHHHHHHHHcCCceEEEec-CC-CCCCCHHHHHHHHHh-CCCceEEEEEecCCcccchhH---HHHHHHHH
Confidence 65555 4554 56677889999999998 43 468899999998854 245677888999999999876 57888999
Q ss_pred HhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccc-cccCccceEEEEEcCCchhHHHHHHHHH
Q psy14428 340 KQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNM-GLYGERVGTFSVLTPTSDETERIMSQLK 415 (583)
Q Consensus 340 ~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~-~l~GlRiG~lv~~~p~~~~~~~li~~l~ 415 (583)
+++++++|+|+++..... +.++. ..+..+++.|+||.+ |++| +||+++ + +++++.+.
T Consensus 152 ~~~~~~livD~~~s~g~~------~~~~~----~~~~d~~~~s~~K~l~~~~G--~g~~~~--~-----~~~~~~~~ 209 (355)
T TIGR03301 152 RSHGAVLIVDAMSSFGAI------PIDIE----ELDVDALIASANKCLEGVPG--FGFVIA--R-----RDLLEASA 209 (355)
T ss_pred HHcCCEEEEEeccccCCc------ccchh----hcCccEEEecCCcccccCCc--eeEEEE--C-----HHHHHHhh
Confidence 999999999987643211 11222 224568899999986 5566 699999 6 46777765
|
This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. |
| >PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.8e-15 Score=159.95 Aligned_cols=191 Identities=12% Similarity=0.041 Sum_probs=142.2
Q ss_pred hHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHh-CCCCCEEE
Q psy14428 184 PSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERF-YPGVKTVY 262 (583)
Q Consensus 184 ~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~-~~~gd~Vl 262 (583)
+.-.+++.+.+..+ .. .+.....+|++++|++++. ++++. ++|+++|+.++ +..+ .++||+|+
T Consensus 14 ~~e~~~~~~~l~~~-~~--~~g~~~~~le~~la~~~g~--------~~~v~--~~sgt~al~la---l~al~~~~Gd~Vi 77 (379)
T PRK11658 14 DEELAAVKEVLRSG-WI--TTGPKNQALEQAFCQLTGN--------QHAIA--VSSATAGMHIT---LMALGIGPGDEVI 77 (379)
T ss_pred HHHHHHHHHHHHcC-Cc--cCCHhHHHHHHHHHHHhCC--------CeEEE--ECCHHHHHHHH---HHHcCCCCCCEEE
Confidence 44455555555442 22 2334579999999999964 34666 89999999985 4445 56799999
Q ss_pred EcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhc
Q psy14428 263 FPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQR 342 (583)
Q Consensus 263 v~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~ 342 (583)
+++|+|..+...+...|++++.+++ |.+++.+|++.+++.+ .+++++++ |+||+|...+ +++|.++|+++
T Consensus 78 v~~~~~~~~~~~~~~~G~~~v~vd~-~~~~~~~d~~~l~~~i---~~~tkav~---~~~~~G~~~d---~~~i~~~a~~~ 147 (379)
T PRK11658 78 TPSLTWVSTLNMIVLLGATPVMVDV-DRDTLMVTPEAIEAAI---TPRTKAII---PVHYAGAPAD---LDAIRAIGERY 147 (379)
T ss_pred ECCCcHHHHHHHHHHcCCEEEEEec-CCCcCCcCHHHHHHhc---ccCCeEEE---EeCCCCCcCC---HHHHHHHHHHc
Confidence 9999999999999999999999998 6666678999998887 56778776 6778998765 56778889999
Q ss_pred CeEEEEeccCCC-CCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHH
Q psy14428 343 HLYPFFDMAYLG-LTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKIL 417 (583)
Q Consensus 343 ~i~iI~De~Y~~-l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~ 417 (583)
|++||+|+++.. ..+.+. . + ...+ +.+.||++...+++.+.|+++. .+ +++.++++..
T Consensus 148 gi~vi~D~a~a~g~~~~~~--~---~----g~~g--~~~~Sf~~~K~l~~g~GG~v~~--~~----~~~~~~~~~~ 206 (379)
T PRK11658 148 GIPVIEDAAHAVGTYYKGR--H---I----GARG--TAIFSFHAIKNITCAEGGLVVT--DD----DELADRLRSL 206 (379)
T ss_pred CCeEEEECCCccCCeECCe--e---c----CCCC--CEEEeCCCCCcCcccCceEEEE--CC----HHHHHHHHHH
Confidence 999999999973 444431 1 1 1122 2567888777778889999888 65 4677777654
|
|
| >PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-15 Score=161.46 Aligned_cols=174 Identities=16% Similarity=0.109 Sum_probs=130.1
Q ss_pred CCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEe
Q psy14428 207 GDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYR 286 (583)
Q Consensus 207 G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~ 286 (583)
|..++++++.+++.+..| .+++++ |+|+++|+.++ +.....++||+|+++.|+|..+...+...|++++.++
T Consensus 28 g~~~~~~~~e~~la~~~g----~~~~v~--~~sgt~al~~~--l~~~~~~~Gd~Viv~~~t~~~~~~~~~~~G~~~v~~d 99 (375)
T PRK11706 28 GDGGFTRRCQQWLEQRFG----SAKVLL--TPSCTAALEMA--ALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVD 99 (375)
T ss_pred CCCHHHHHHHHHHHHHhC----CCeEEE--ECCHHHHHHHH--HHHhCCCCCCEEEECCCCcHHHHHHHHHcCCEEEEEe
Confidence 345677777777765543 368999 99999999885 2223456799999999999999999999999999999
Q ss_pred cccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCC-CCCCCCchH
Q psy14428 287 YFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLT-SGDFDKDAF 365 (583)
Q Consensus 287 ~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~-~~~~~~~~~ 365 (583)
+ |++++.+|++.+++.+ .+++++++++ ||||...+ +++|+++|++++++||+|++|.... +++ .
T Consensus 100 ~-d~~~~~~d~~~le~~i---~~~tk~i~~~---~~~G~~~~---~~~i~~la~~~~i~vIeD~a~a~g~~~~~---~-- 164 (375)
T PRK11706 100 I-RPDTMNIDETLIEAAI---TPKTRAIVPV---HYAGVACE---MDTIMALAKKHNLFVVEDAAQGVMSTYKG---R-- 164 (375)
T ss_pred c-CCCcCCcCHHHHHHhc---CCCCeEEEEe---CCCCCccC---HHHHHHHHHHcCCEEEEECccccccccCC---e--
Confidence 9 6666778999998887 4567877754 57997755 5677888999999999999998876 333 1
Q ss_pred HHHHHHHhcCcEEEEecCc----ccccccCccceEEEEEcCCchhHHHHHHHHHHHH
Q psy14428 366 SLRYFAKEVGQLCLAQSFS----KNMGLYGERVGTFSVLTPTSDETERIMSQLKILI 418 (583)
Q Consensus 366 ~~~~~~~~~~~vi~i~S~S----K~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~ 418 (583)
++.. ...+++|| |.++ +|.+.++++. + +++.++++..+
T Consensus 165 ~~g~-------~~~~~~~Sf~~~K~l~-~g~gG~~~~~--~-----~~~~~~~~~~~ 206 (375)
T PRK11706 165 ALGT-------IGHIGCFSFHETKNYT-AGEGGALLIN--D-----PALIERAEIIR 206 (375)
T ss_pred eeec-------CcCEEEEeCCCCcccc-ccCCeEEEEC--C-----HHHHHHHHHHH
Confidence 1111 11334444 9997 7998777765 4 57887777665
|
|
| >TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.4e-15 Score=159.62 Aligned_cols=193 Identities=17% Similarity=0.076 Sum_probs=145.4
Q ss_pred CCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhC
Q psy14428 176 EDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFY 255 (583)
Q Consensus 176 ~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~ 255 (583)
..|...+++.+.+++.+..++ |. +.+++++++.+++.+.+|. +++++ |+|++.|+.++ +..++
T Consensus 19 ~~g~s~~~~~v~~a~~~~~~~-----~~---~~~~~~~~~~~~~a~~~g~----~~~~~--~~g~t~al~~a---l~al~ 81 (363)
T TIGR01437 19 ILGVSTVSDEVADAQKRGAQN-----YF---EIKELVNKTGEYIANLLGV----EDAVI--VSSASAGIAQS---VAAVI 81 (363)
T ss_pred cCCCCCCCHHHHHHHHHHHhc-----CC---CHHHHHHHHHHHHHHhhCC----CeEEE--EcCHHHHHHHH---HHHHh
Confidence 455555788999998887642 32 4678888888888776653 47888 99999999986 34445
Q ss_pred CCCC---------------EEEEcCCCChhh----HHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEE-
Q psy14428 256 PGVK---------------TVYFPTPTWNGH----VRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFL- 315 (583)
Q Consensus 256 ~~gd---------------~Vlv~~P~y~~~----~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~- 315 (583)
.+|| +|+++.|.|..| ...+...|++++.++. + +.+|++.+++++ ++++++++
T Consensus 82 ~~Gd~~~~~~~~~s~~~~~eVi~~~~~~~~~~~~~~~~~~~~g~~~v~v~~-~---~~~d~~~le~ai---~~~t~ai~~ 154 (363)
T TIGR01437 82 TRGNRYLVENLHDSKIEVNEVVLPKGHNVDYGAPVETMVRLGGGKVVEAGY-A---NECSAEQLEAAI---TEKTAAILY 154 (363)
T ss_pred cCCCcchhhcccccccccceEEEECccchhcCCchHHHHHhcCCeEEEEcC-C---CCCCHHHHHHhc---ChhceEEEE
Confidence 6687 999999888766 5677888999998876 2 468999999988 56667555
Q ss_pred eCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccce
Q psy14428 316 QTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVG 395 (583)
Q Consensus 316 i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG 395 (583)
+++||||+|.+.+.+ +|.++|+++|+++|+|++|.. + .... ... +--+++.|++|.+ +|+|.|
T Consensus 155 v~~~~~~~g~~~~~~---~i~~~a~~~gi~vivD~a~~~----~----~~~~---~~~-g~D~~~~S~~K~l--~gp~~G 217 (363)
T TIGR01437 155 IKSHHCVQKSMLSVE---DAAQVAQEHNLPLIVDAAAEE----D----LQKY---YRL-GADLVIYSGAKAI--EGPTSG 217 (363)
T ss_pred EecCCCCcCCcCCHH---HHHHHHHHcCCeEEEECCCCC----c----hHHH---HHc-CCCEEEEeCCccc--CCCceE
Confidence 688999999999865 568899999999999999961 1 1111 121 3357779999976 688999
Q ss_pred EEEEEcCCchhHHHHHHHHHH
Q psy14428 396 TFSVLTPTSDETERIMSQLKI 416 (583)
Q Consensus 396 ~lv~~~p~~~~~~~li~~l~~ 416 (583)
++++ + +++++.+..
T Consensus 218 ~l~~--~-----~~~i~~~~~ 231 (363)
T TIGR01437 218 LVLG--K-----KKYIEWVKL 231 (363)
T ss_pred EEEE--c-----HHHHHHHHh
Confidence 9998 6 467777643
|
This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. |
| >PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.5e-15 Score=161.08 Aligned_cols=202 Identities=12% Similarity=0.014 Sum_probs=149.7
Q ss_pred CChHHHHHHHHHhccCC-------CCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHh
Q psy14428 182 VLPSVKEAERRIYEKNL-------DHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERF 254 (583)
Q Consensus 182 ~~~~v~~a~~~~~~~~~-------~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~ 254 (583)
+++.+.+++.+...... ...+.......++|+.+|++++. +++++ |+|+++++.++ +..+
T Consensus 32 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lA~~~g~--------~~~~~--~~g~t~a~~~a---l~~l 98 (387)
T PRK09331 32 LTPEARKALIEYGDGYSVCDYCPGRLDQIKKPPIADFHEDLAEFLGM--------DEARV--THGAREGKFAV---MHSL 98 (387)
T ss_pred CCHHHHHHHHHHHhccCCCcccccccccccChHHHHHHHHHHHHhCC--------CcEEE--eCCHHHHHHHH---HHHh
Confidence 45778888777663311 11122233478999999999863 46778 99999999875 4455
Q ss_pred CCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcC----CCCcEEEEeCCCCCCCCCCCCHH
Q psy14428 255 YPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAM----PERSILFLQTSSHNPTGVDLSED 330 (583)
Q Consensus 255 ~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~----~~~~~~i~i~~p~NPTG~~~s~~ 330 (583)
..+||+|+++.++|......++..|++++.++...++++.+|++.+++.+.+. .++++++++++|+||||...+
T Consensus 99 ~~~gd~Vlv~~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~~~tG~~~~-- 176 (387)
T PRK09331 99 CKKGDYVVLDGLAHYTSYVAAERAGLNVREVPKTGYPEYKITPEAYAEKIEEVKEETGKPPALALLTHVDGNYGNLAD-- 176 (387)
T ss_pred cCCCCEEEECCCchHHHHHHHHHcCCEEEEEeCccCcCCCcCHHHHHHHHHHhhhccCCCCEEEEEECCCCCCccccc--
Confidence 67799999999997777777888999999998721234678999999988642 246889999999999997665
Q ss_pred HHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHH
Q psy14428 331 QWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERI 410 (583)
Q Consensus 331 ~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~l 410 (583)
+++|.++|+++|+++|+|++|..-..+ .... ..+..+++.|++|.++ .+.|+||+++ + +++
T Consensus 177 -l~~I~~la~~~g~~livD~a~~~g~~~------~~~~----~~g~D~~~~s~~K~l~-~~~~~G~l~~--~-----~~~ 237 (387)
T PRK09331 177 -AKKVAKVAHEYGIPFLLNGAYTVGRMP------VDGK----KLGADFIVGSGHKSMA-ASAPSGVLAT--T-----EEY 237 (387)
T ss_pred -HHHHHHHHHHcCCEEEEECCcccCCcC------CCHH----HcCCCEEEeeCccccc-CCCCEEEEEE--C-----HHH
Confidence 777788899999999999999742211 1111 1245688999999998 5669999998 6 467
Q ss_pred HHHHHHH
Q psy14428 411 MSQLKIL 417 (583)
Q Consensus 411 i~~l~~~ 417 (583)
++.+.+.
T Consensus 238 i~~~~~~ 244 (387)
T PRK09331 238 ADKVFRT 244 (387)
T ss_pred Hhhcccc
Confidence 7776554
|
|
| >TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.9e-15 Score=160.23 Aligned_cols=195 Identities=15% Similarity=0.096 Sum_probs=138.2
Q ss_pred CCCChHHHHHHHHHhccC-----CCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHH--
Q psy14428 180 PYVLPSVKEAERRIYEKN-----LDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLE-- 252 (583)
Q Consensus 180 p~~~~~v~~a~~~~~~~~-----~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~-- 252 (583)
.++++.+.+++.+...+. ..+.|+ ..+.+.|++++++++... +. .++++|++ |+|+++++.++...+.
T Consensus 9 ~~~~~~v~~~~~~~~~~~~~n~~~~~~~~-~~~~~~l~~a~~~~~~~~-~~-~~~~~i~~--t~g~teal~~~~~~~~~~ 83 (382)
T TIGR03403 9 TMLDPKVKELMDPFFCDIYGNPNSLHQFG-TATHPAIAEALDKLYKGI-NA-RDLDDIII--TSCATESNNWVLKGVYFD 83 (382)
T ss_pred CCCCHHHHHHHHHHHHhcCcCCccccHHH-HHHHHHHHHHHHHHHHHc-Cc-CCCCeEEE--eCCHHHHHHHHHHHHHHh
Confidence 335678888887766531 112232 456789999999998632 21 26789999 9999999998643221
Q ss_pred Hh-CCCCCEEEEcCCCChhh---HHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCC
Q psy14428 253 RF-YPGVKTVYFPTPTWNGH---VRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLS 328 (583)
Q Consensus 253 ~~-~~~gd~Vlv~~P~y~~~---~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s 328 (583)
.+ .+++++|+++.+.|+.+ ...++..|++++.+|+ ++ ++.+|++.+++.+ .++++++++++||||||.+++
T Consensus 84 ~~~~~~~~~vi~~~~e~ps~~~~~~~~~~~G~~v~~v~~-~~-~g~~d~~~l~~~i---~~~t~lv~~~~~~n~tG~~~~ 158 (382)
T TIGR03403 84 EILKGGKNHIITTEVEHPAVRATCAFLESLGVEVTYLPI-NE-QGTITAEQVREAI---TEKTALVSVMWANNETGMIFP 158 (382)
T ss_pred hcccCCCCEEEEcCCccHHHHHHHHHHHHCCCEEEEEec-CC-CCCCCHHHHHHhc---ccCCeEEEEEcccCCCccccC
Confidence 11 23357899887555544 4445678999999998 54 3677899998887 456789999999999999999
Q ss_pred HHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEE
Q psy14428 329 EDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSV 399 (583)
Q Consensus 329 ~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~ 399 (583)
.+ +|.++|+++|+++++|+++..-... ..+ .+ .+--+++.|+.|.+|.+|+ |++++
T Consensus 159 ~~---~I~~la~~~g~~~ivD~a~~~g~~~------~~~---~~-~~~D~~~~s~~K~~gp~G~--g~l~v 214 (382)
T TIGR03403 159 IK---EIGEICKERGVLFHTDAVQAIGKIP------VDV---QK-AGVDFLSFSAHKFHGPKGV--GGLYI 214 (382)
T ss_pred HH---HHHHHHHHcCCEEEEechhhcCCCc------cCc---cc-cCCCEEEEcchhhCCCCce--EEEEE
Confidence 54 6788889999999999996522111 111 11 1223788999998887784 88887
|
Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation. |
| >PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=5e-15 Score=158.07 Aligned_cols=238 Identities=12% Similarity=0.147 Sum_probs=158.1
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccC--CCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecC
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKN--LDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGI 238 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~--~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~ 238 (583)
.+...+|+..|.+....|.- .|.+.+++.+.+... ....|. .....+|.+.+++.. ..+++++ ++
T Consensus 37 dG~~~lD~~~g~~~~~lGh~--~p~v~~A~~~~~~~~~~~~~~~~-~~~~~~la~~l~~~~--------~~~~v~~--~~ 103 (406)
T PRK12381 37 QGKEYIDFAGGIAVNALGHA--HPALREALNEQASKFWHTGNGYT-NEPVLRLAKKLIDAT--------FADRVFF--CN 103 (406)
T ss_pred CCCEEEEcCcCHhhccCCCC--CHHHHHHHHHHHhhcccccCccC-CHHHHHHHHHHHhhC--------CCCeEEE--cC
Confidence 34567888887766566653 467777777666431 111121 111234444444432 1368999 99
Q ss_pred CchhHHHHHHHHHHHhC-----CCCCEEEEcCCCChhhHHHHhhcCCe-------------EEEEecccCCCCCCChhhH
Q psy14428 239 SGSGSLRVGTAFLERFY-----PGVKTVYFPTPTWNGHVRFCTDSRLN-------------VGAYRYFDNKTNGLDFAGM 300 (583)
Q Consensus 239 G~~~al~l~~~~l~~~~-----~~gd~Vlv~~P~y~~~~~~~~~~G~~-------------~~~v~~~d~~~~g~d~~~l 300 (583)
+|++|.+.+..+.+... ++...|+..+.+|..........+.. ++.+|. .|++.+
T Consensus 104 sGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l 176 (406)
T PRK12381 104 SGAEANEAALKLARKYAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPKYSQDFAPLPPDIRHAAY-------NDLNSA 176 (406)
T ss_pred CcHHHHHHHHHHHHHHHhhcCCCCCCeEEEECCCcCCcchhHHhhcCCcccccCCCCCCCCeeEeCC-------CCHHHH
Confidence 99999998766654442 23578999999998875433332221 111111 267778
Q ss_pred HHHHHcCCCCcEEEEeCCCCCCCCCCC--CHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEE
Q psy14428 301 MEDIKAMPERSILFLQTSSHNPTGVDL--SEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLC 378 (583)
Q Consensus 301 ~~~l~~~~~~~~~i~i~~p~NPTG~~~--s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi 378 (583)
++.+ .+++.++++ +|.||+|.++ +.+.+++|.++|++|++++|+||+|.++.+.+ ...+...+ +....
T Consensus 177 ~~~l---~~~~aavii-EPv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~G---~~~~~~~~-~v~pD-- 246 (406)
T PRK12381 177 SALI---DDQTCAVIV-EPIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTG---ELYAYMHY-GVTPD-- 246 (406)
T ss_pred HHhc---cCCeeEEEE-eCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCCc---chhhhHhh-CCCCC--
Confidence 7766 345666665 7999999876 79999999999999999999999998886655 22222221 11122
Q ss_pred EEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHh
Q psy14428 379 LAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEIL 437 (583)
Q Consensus 379 ~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l 437 (583)
+.||||.++ +|+|+||+++ + +++++.+........++.+++.|.++.+.+
T Consensus 247 -i~t~sK~l~-gG~~ig~~~~--~-----~~~~~~~~~~~~~~t~~~~pl~~aaa~a~l 296 (406)
T PRK12381 247 -VLTTAKALG-GGFPIGAMLT--T-----EKCASVMTVGTHGTTYGGNPLASAVAGKVL 296 (406)
T ss_pred -EEEehhhhh-CCCceEEEEE--c-----HHHHhhcCCCCCCCCCCCCHHHHHHHHHHH
Confidence 359999998 9999999999 7 578888876544556678888888888744
|
|
| >cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-15 Score=160.33 Aligned_cols=197 Identities=15% Similarity=0.112 Sum_probs=136.4
Q ss_pred CCCChHHHHHHHHHhccCCCCCCCCCCC--CHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCC
Q psy14428 180 PYVLPSVKEAERRIYEKNLDHEYANIGG--DAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPG 257 (583)
Q Consensus 180 p~~~~~v~~a~~~~~~~~~~~~Y~~~~G--~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~ 257 (583)
+.+++.+.+++.+... ...| +... ..++++.++++++. + .++.+++ |.|+++++.++ +..++.+
T Consensus 8 ~~~~~~v~~a~~~~~~---~~~~-~~~~~~~~~~~~~la~~~g~----~-~~~~~~~--~~~~t~al~~~---~~~~~~~ 73 (356)
T cd06451 8 SNVPPRVLKAMNRPML---GHRS-PEFLALMDEILEGLRYVFQT----E-NGLTFLL--SGSGTGAMEAA---LSNLLEP 73 (356)
T ss_pred cCCCHHHHHHhCCCcc---CCCC-HHHHHHHHHHHHHHHHHhcC----C-CCCEEEE--ecCcHHHHHHH---HHHhCCC
Confidence 3356777777654321 1222 2111 45677777777742 1 2345677 88889999885 4456677
Q ss_pred CCEEEEcCCCChh--hHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHH
Q psy14428 258 VKTVYFPTPTWNG--HVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQL 335 (583)
Q Consensus 258 gd~Vlv~~P~y~~--~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l 335 (583)
||+|++++|+|.. +...++..|++++.+|. ++ ++.+|++.+++.+.. .+++++++++|+||||.+++.+ +|
T Consensus 74 g~~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~-~~-~~~~~~~~l~~~i~~--~~~~~v~i~~~~~~~G~~~~~~---~i 146 (356)
T cd06451 74 GDKVLVGVNGVFGDRWADMAERYGADVDVVEK-PW-GEAVSPEEIAEALEQ--HDIKAVTLTHNETSTGVLNPLE---GI 146 (356)
T ss_pred CCEEEEecCCchhHHHHHHHHHhCCCeEEeec-CC-CCCCCHHHHHHHHhc--cCCCEEEEeccCCCcccccCHH---HH
Confidence 9999999987654 56778889999999998 54 367899999998842 2678899999999999998855 56
Q ss_pred HHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHH
Q psy14428 336 AVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLK 415 (583)
Q Consensus 336 ~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~ 415 (583)
.++|+++|++||+|+++.. +. .+.++. .. +..+++.|.+|.++.| .++||++. + +++++.+.
T Consensus 147 ~~~a~~~~~~li~D~~~~~---g~---~~~~~~---~~-~~d~~~~s~~K~l~~p-~g~G~l~~--~-----~~~~~~~~ 208 (356)
T cd06451 147 GALAKKHDALLIVDAVSSL---GG---EPFRMD---EW-GVDVAYTGSQKALGAP-PGLGPIAF--S-----ERALERIK 208 (356)
T ss_pred HHHHHhcCCEEEEeeehhc---cC---cccccc---cc-CccEEEecCchhccCC-CCcceeEE--C-----HHHHHHHH
Confidence 7788899999999998752 21 011111 11 2235567889999854 46899999 6 46777665
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. |
| >PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.2e-15 Score=161.96 Aligned_cols=200 Identities=12% Similarity=0.047 Sum_probs=142.5
Q ss_pred CChHHHHHHHHHhccC-C-C---CCCCC---CCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHH-
Q psy14428 182 VLPSVKEAERRIYEKN-L-D---HEYAN---IGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLE- 252 (583)
Q Consensus 182 ~~~~v~~a~~~~~~~~-~-~---~~Y~~---~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~- 252 (583)
+++.+.+++.+...+. . . ..|.. .....++|++++++++.. ++++|++ |+|+++++.++...+.
T Consensus 44 ~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~-----~~~~v~~--t~g~t~al~~i~~~~~~ 116 (424)
T PLN02855 44 KPAAVLDALQDYYEEYNSNVHRGIHALSAKATDAYELARKKVAAFINAS-----TSREIVF--TRNATEAINLVAYTWGL 116 (424)
T ss_pred CCHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHcCCC-----CCCEEEE--eCCHHHHHHHHHHHhhh
Confidence 4577778776665431 0 0 11111 122468999999998631 3579999 9999999998643321
Q ss_pred HhCCCCCEEEEcCCCChh----hHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCC
Q psy14428 253 RFYPGVKTVYFPTPTWNG----HVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLS 328 (583)
Q Consensus 253 ~~~~~gd~Vlv~~P~y~~----~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s 328 (583)
...++||+|++++|.|+. +...++..|++++.+++ +.+ ..+|++.+++.+ .++++++++++++||||.+++
T Consensus 117 ~~~~~gd~vl~~~~~~~s~~~~~~~~a~~~g~~v~~v~~-~~~-~~~~~~~l~~~i---~~~t~lv~i~~~~n~tG~~~~ 191 (424)
T PLN02855 117 ANLKPGDEVILSVAEHHSNIVPWQLVAQKTGAVLKFVGL-TPD-EVLDVEQLKELL---SEKTKLVATHHVSNVLGSILP 191 (424)
T ss_pred hcCCCcCEEEECCCccHHHHHHHHHHHHHcCCEEEEEec-CCC-CCcCHHHHHHHh---ccCceEEEEeCccccccccCC
Confidence 134669999999997664 45566778999999998 443 568999998888 567899999999999999998
Q ss_pred HHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHH
Q psy14428 329 EDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETE 408 (583)
Q Consensus 329 ~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~ 408 (583)
.+ +|+++|++++++||+|+++..-.. +..+ ...+..+++.|++|.+|.+| +||+++ + +
T Consensus 192 ~~---~I~~l~~~~g~~vivD~a~~~g~~------~~~~----~~~~~d~~~~s~~K~~gp~G--~G~l~~--~-----~ 249 (424)
T PLN02855 192 VE---DIVHWAHAVGAKVLVDACQSVPHM------PVDV----QTLGADFLVASSHKMCGPTG--IGFLWG--K-----S 249 (424)
T ss_pred HH---HHHHHHHHcCCEEEEEhhhhcCCc------CCCc----hhcCCCEEEeecccccCCCc--cEEEEE--c-----h
Confidence 54 668889999999999999842111 1112 12233577999999887555 899999 6 3
Q ss_pred HHHHHHH
Q psy14428 409 RIMSQLK 415 (583)
Q Consensus 409 ~li~~l~ 415 (583)
++++++.
T Consensus 250 ~~~~~~~ 256 (424)
T PLN02855 250 DLLESMP 256 (424)
T ss_pred hhhhcCC
Confidence 5666653
|
|
| >PRK04260 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=6e-15 Score=155.94 Aligned_cols=281 Identities=11% Similarity=0.036 Sum_probs=180.0
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCC-CeEEEecCC
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDN-RLAIVQGIS 239 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~-~I~i~~t~G 239 (583)
.+...+|+..|......|. .|.+.+++.+.+... ..+ +..-..++++++++.+... ++ .+++ +++
T Consensus 27 dg~~~lD~~s~~~~~~lG~---~p~v~~a~~~~~~~~--~~~-~~~~~~~~~~~la~~l~~~------~~~~~~~--~~S 92 (375)
T PRK04260 27 DGKKYLDFSSGIGVTNLGF---HPQVQQALQKQAGLI--WHS-PNLYLNSLQEEVAQKLIGD------KDYLAFF--CNS 92 (375)
T ss_pred CCCEEEECCCCcccccCCC---CHHHHHHHHHHHHhc--Ccc-cCccCCHHHHHHHHHHhcC------cCCEEEE--cCc
Confidence 3456788877654444453 356888777766531 122 2233467889999887531 23 4577 899
Q ss_pred chhHHHHHHHHHHHhCCCCCEEEEcCCCChhhH-HHHhhcCCe---------EEEEecccCCCCCCChhhHHHHHHcCCC
Q psy14428 240 GSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHV-RFCTDSRLN---------VGAYRYFDNKTNGLDFAGMMEDIKAMPE 309 (583)
Q Consensus 240 ~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~-~~~~~~G~~---------~~~v~~~d~~~~g~d~~~l~~~l~~~~~ 309 (583)
+++|...+..+.+...+ ++.|++.+.+|.... ..+...|.+ +..++.. . -.|++.+++.+ .+
T Consensus 93 GseA~~~Al~~ar~~~~-~~~vv~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~dl~~l~~~l---~~ 164 (375)
T PRK04260 93 GAEANEAAIKIARKATG-KQEIITFQNSFHGRTFGSMSATGQDKIKDGFGDGVPHFSYA-I---FNDLNSVKALV---NK 164 (375)
T ss_pred cHHHHHHHHHHHHHhcC-CCeEEEECCCcCcccHHHHhccCCcccCCCCCCCCCCeEEe-C---CCCHHHHHHhc---CC
Confidence 99999876555544444 678999999988642 222222221 1111110 0 12677777766 45
Q ss_pred CcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCccccc
Q psy14428 310 RSILFLQTSSHNPTGVDL-SEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMG 388 (583)
Q Consensus 310 ~~~~i~i~~p~NPTG~~~-s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~ 388 (583)
+..++++.+++|++|... +.+.++++.++|+++|+++|+||+|.++...+ ...+.... ...+. +.||||.++
T Consensus 165 ~~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g~~g---~~~~~~~~-~~~pd---i~t~sK~l~ 237 (375)
T PRK04260 165 NTAAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTG---KLYAFEHY-GIEPD---IFTLAKGLA 237 (375)
T ss_pred CeEEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccc---chhhhHhh-CCCCC---EEEeccccc
Confidence 678899999999999874 56789999999999999999999999876544 22222121 22233 348999998
Q ss_pred ccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhc-----
Q psy14428 389 LYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGF----- 463 (583)
Q Consensus 389 l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~----- 463 (583)
+|+|+||+++ + +++++.+.........+.+++.|.++.++++....+.+.++.+...+.+++.++..
T Consensus 238 -~G~~ig~~~~--~-----~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 309 (375)
T PRK04260 238 -NGVPVGAMLA--K-----SSLGGAFGYGSHGSTFGGNKLSMAAASATLDIMLTAGFLEQALENGNYLQEQLQKALQDKE 309 (375)
T ss_pred -CCcceEEEEE--c-----HHHHhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 9999999999 7 47788776554555677789999999999865433344444444444443333221
Q ss_pred -cCCCccchhhHHHHh
Q psy14428 464 -YSNPPIHGARIVTEI 478 (583)
Q Consensus 464 -~~~~p~~g~~i~~~~ 478 (583)
+...+..|.++|..+
T Consensus 310 ~~~~~~~~g~~~~~~~ 325 (375)
T PRK04260 310 TVTTVRGLGYMIGIET 325 (375)
T ss_pred CeeEEeccceEEEEEe
Confidence 223344677777765
|
|
| >PRK09028 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.5e-15 Score=158.15 Aligned_cols=214 Identities=14% Similarity=0.120 Sum_probs=156.8
Q ss_pred CCCCC--CCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHH--
Q psy14428 200 HEYAN--IGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFC-- 275 (583)
Q Consensus 200 ~~Y~~--~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~-- 275 (583)
+.|+. ..+...|+++||++.+. +++++ ++|+++|+..+ +..++++||+|++++|.|.++...+
T Consensus 53 ~~Y~r~~npt~~~Le~~iA~le~~--------~~~~~--~~sG~~Ai~~~---l~all~~GD~Vvv~~~~Y~~t~~l~~~ 119 (394)
T PRK09028 53 MFYGRRGTPTHFAFQAAIVELEGG--------AGTAL--YPSGAAAISNA---LLSFLKAGDHLLMVDSCYEPTRDLCDK 119 (394)
T ss_pred ceecCCCCchHHHHHHHHHHHhCC--------CcEEE--ECCHHHHHHHH---HHHHhCCCCEEEEECCCcHHHHHHHHH
Confidence 44665 33457999999998643 36788 99999999985 3345667999999999998887543
Q ss_pred --hhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCC
Q psy14428 276 --TDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYL 353 (583)
Q Consensus 276 --~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~ 353 (583)
+..|+++..++. . +.+.+++.+ .++++++++++|+||||.+ .++++|+++|+++++++|+|++|.
T Consensus 120 ~l~~~Gi~v~~v~~---~----~~e~l~~~l---~~~TklV~lespsNPtg~v---~dl~~I~~la~~~g~~lvvD~t~a 186 (394)
T PRK09028 120 ILKGFGIETTYYDP---M----IGEGIRELI---RPNTKVLFLESPGSITMEV---QDVPTLSRIAHEHDIVVMLDNTWA 186 (394)
T ss_pred hhhhcceEEEEECC---C----CHHHHHHhc---CcCceEEEEECCCCCCCcH---HHHHHHHHHHHHcCCEEEEECCcc
Confidence 456887776643 1 345666665 5789999999999999765 678889999999999999999997
Q ss_pred CCCCCCCCCchHHHHHHHHhcCcEEEEecCcccc-cccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHH
Q psy14428 354 GLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNM-GLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARI 432 (583)
Q Consensus 354 ~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~-~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~ 432 (583)
.-..-. ++ ..+--+++.|.+|.+ |-.++..|+++. . +++.+++.........+.++...+.
T Consensus 187 ~p~~~~------Pl-----~~GaDivv~S~tK~l~Gh~d~~~G~~~~--~-----~~~~~~l~~~~~~~G~~~~p~~a~l 248 (394)
T PRK09028 187 SPINSR------PF-----EMGVDISIQAATKYIVGHSDVMLGTATA--N-----EKHWDQLREHSYLMGQCTSPDDVYL 248 (394)
T ss_pred ccccCC------cc-----ccCceEEEEeCCeEecCCCCEEEEEEEC--C-----HHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 532111 11 234569999999999 444677786654 3 3567777766666778889999888
Q ss_pred HHHHhCC--hhhhhhhhhHHHHHHHHH
Q psy14428 433 VTEILSD--PKLKAQCDETERIMSQLK 457 (583)
Q Consensus 433 ~~~~l~~--~~~~~~~~~~~~~~~~l~ 457 (583)
+..-++. -.+++|.++...+.+.++
T Consensus 249 ~~rgl~TL~lR~~~~~~na~~la~~L~ 275 (394)
T PRK09028 249 AMRGLRTLGVRLAQHEKNALKVANWLA 275 (394)
T ss_pred HHcccCcHHHHHHHHHHHHHHHHHHHh
Confidence 8888885 356666666666555554
|
|
| >PRK09064 5-aminolevulinate synthase; Validated | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.4e-14 Score=154.80 Aligned_cols=237 Identities=14% Similarity=0.050 Sum_probs=147.4
Q ss_pred CCccccCCccccCCCCCCCCChHHHHHHHHHhccC-CC-----CCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEe
Q psy14428 163 PKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKN-LD-----HEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQ 236 (583)
Q Consensus 163 ~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~-~~-----~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~ 236 (583)
.+.++|+..++- |.. +.|.+.+++.+..... .. ..|.+..-..+|++.+|+++.. ++.+++
T Consensus 46 ~~~~~~~s~dyl---gl~-~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~la~~~g~-------~~~~~~-- 112 (407)
T PRK09064 46 REVTVWCSNDYL---GMG-QHPKVIEAMIEALDRCGAGAGGTRNISGTNHYHVELERELADLHGK-------EAALVF-- 112 (407)
T ss_pred ceEEEEECCCCc---CCC-CCHHHHHHHHHHHHHcCCCCCCcCcCccCHHHHHHHHHHHHHHhCC-------CcEEEE--
Confidence 456777766553 322 3467877777665431 11 1233444567788888887741 356666
Q ss_pred cCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCC-CCcEEEE
Q psy14428 237 GISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMP-ERSILFL 315 (583)
Q Consensus 237 t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~-~~~~~i~ 315 (583)
++|. ++...+..++... .+++.|+.....+......++..|+++..++. .|++.+++.++... +++++++
T Consensus 113 ~sG~-~an~~ai~~l~~~-~~~~~i~~~~~~h~s~~~~~~~~~~~~~~~~~-------~d~~~le~~l~~~~~~~~~~v~ 183 (407)
T PRK09064 113 TSGY-VSNDATLSTLAKL-IPDCVIFSDELNHASMIEGIRRSRCEKHIFRH-------NDVAHLEELLAAADPDRPKLIA 183 (407)
T ss_pred CcHH-HHHHHHHHHHhCC-CCCCEEEEeCcchHHHHHHHHHcCCcEEEECC-------CCHHHHHHHHHhccCCCCeEEE
Confidence 6664 3433321121111 24676666665566665666667777655543 16778877775433 4678999
Q ss_pred eCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHh-cCcEEEEecCcccccccCccc
Q psy14428 316 QTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKE-VGQLCLAQSFSKNMGLYGERV 394 (583)
Q Consensus 316 i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~-~~~vi~i~S~SK~~~l~GlRi 394 (583)
+++++||+|.+.+ +++|.++|++++++||+||+|..-.++.. . ..+....+. .+..|+++||||.||++|
T Consensus 184 ~~~v~s~~G~~~~---l~~i~~l~~~~~~~livDEa~~~G~~g~~--g-~g~~~~~~~~~~~div~~t~sKa~g~~G--- 254 (407)
T PRK09064 184 FESVYSMDGDIAP---IAEICDLADKYNALTYLDEVHAVGMYGPR--G-GGIAERDGLMDRIDIIEGTLAKAFGVMG--- 254 (407)
T ss_pred EeCCCCCCccccC---HHHHHHHHHHcCCEEEEECCCcccccCCC--C-CChHHhcCCCCCCeEEEEecchhhhccC---
Confidence 9999999998887 66778889999999999999973333321 1 112222121 234788999999999888
Q ss_pred eEEEEEcCCchhHHHHHHHHHHHHhcc--ccCCChHHHHHHHHHh
Q psy14428 395 GTFSVLTPTSDETERIMSQLKILIRGF--YSNPPIHGARIVTEIL 437 (583)
Q Consensus 395 G~lv~~~p~~~~~~~li~~l~~~~~~~--~~~~s~~~q~~~~~~l 437 (583)
||+++ + +++++.+....... ..+.++..+.++...+
T Consensus 255 G~~~~--~-----~~~~~~l~~~~~~~~~t~~~~~~~~~aa~~al 292 (407)
T PRK09064 255 GYIAG--S-----AALVDAVRSYAPGFIFTTSLPPAIAAAALASI 292 (407)
T ss_pred ceEec--C-----HHHHHHHHHhCccccccCcCCHHHHHHHHHHH
Confidence 99988 6 57888887654332 2234555555554444
|
|
| >PRK05939 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.1e-15 Score=155.69 Aligned_cols=216 Identities=13% Similarity=0.115 Sum_probs=148.5
Q ss_pred CCCCCCCCH---HHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHH---H
Q psy14428 201 EYANIGGDA---KFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVR---F 274 (583)
Q Consensus 201 ~Y~~~~G~~---~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~---~ 274 (583)
.|.- .|.| .|.++++++.+.. ..|++ ++ |+.|+..+ +..+.++||+|+++++.|+.+.. .
T Consensus 40 ~Y~r-~g~p~~~~lE~~la~leg~~-------~~v~~--ss-G~~Ai~~~---l~all~~Gd~Vv~~~~~y~~t~~~~~~ 105 (397)
T PRK05939 40 TYAR-QGTPTTAALEAKITKMEGGV-------GTVCF--AT-GMAAIAAV---FLTLLRAGDHLVSSQFLFGNTNSLFGT 105 (397)
T ss_pred CcCC-CCCHHHHHHHHHHHHHhCCC-------eEEEe--CC-HHHHHHHH---HHHHcCCCCEEEECCCccccHHHHHHH
Confidence 3443 3666 9999999988643 24554 44 57888874 44456779999999999986543 4
Q ss_pred HhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCC
Q psy14428 275 CTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLG 354 (583)
Q Consensus 275 ~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~ 354 (583)
++..|++++.++.. |++.+++.+ .++++++++++|+||||.+ .++++|+++|+++|++||+|++|..
T Consensus 106 l~~~G~~v~~v~~~-------d~e~l~~~l---~~~tklV~vesp~NptG~v---~dl~~I~~la~~~gi~livD~t~a~ 172 (397)
T PRK05939 106 LRGLGVEVTMVDAT-------DVQNVAAAI---RPNTRMVFVETIANPGTQV---ADLAGIGALCRERGLLYVVDNTMTS 172 (397)
T ss_pred HHhcCCEEEEECCC-------CHHHHHHhC---CCCCeEEEEECCCCCCCCH---HhHHHHHHHHHHcCCEEEEECCccc
Confidence 56689999888661 678887777 5788999999999999987 5688899999999999999999853
Q ss_pred C-CCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCch--------hH---------HHHHHHHHH
Q psy14428 355 L-TSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSD--------ET---------ERIMSQLKI 416 (583)
Q Consensus 355 l-~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~--------~~---------~~li~~l~~ 416 (583)
. .++. ...+..+++.|+||.++.+|.++|++++ ++.. .. +..+..+.+
T Consensus 173 ~~~~~~------------~~~gaDivv~S~sK~~~g~g~~igg~v~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (397)
T PRK05939 173 PWLFRP------------KDVGASLVINSLSKYIAGHGNALGGAVT--DTGLFDWSAYPNIFPAYRKGDPQQWGLTQIRK 238 (397)
T ss_pred ccccCc------------cccCCEEEEecCeecccCCCCeEEEEEe--cCcccccccccchhhhhhccchhhHHHHHHHH
Confidence 2 2211 1125679999999999989999999988 4211 00 000122221
Q ss_pred -HHhccccCCChHHHHHHHHHhCC--hhhhhhhhhHHHHHHHHH
Q psy14428 417 -LIRGFYSNPPIHGARIVTEILSD--PKLKAQCDETERIMSQLK 457 (583)
Q Consensus 417 -~~~~~~~~~s~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~l~ 457 (583)
..+......++...+.+..-++. -.++++.++...+.+.++
T Consensus 239 ~~~~~~G~~~~p~~a~l~~rgl~tl~~R~~~~~~na~~la~~L~ 282 (397)
T PRK05939 239 KGLRDMGATLSSEAAHRIAIGAETLALRVDRSCSNALALAQFLE 282 (397)
T ss_pred HHHHhcCCCCCHHHHHHHHcCcCcHHHHHHHHHHHHHHHHHHHH
Confidence 22344556677777766666664 345566555555544443
|
|
| >TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.6e-14 Score=154.28 Aligned_cols=236 Identities=12% Similarity=0.051 Sum_probs=148.9
Q ss_pred CCccccCCccccCCCCCCCCChHHHHHHHHHhcc-CCC-----CCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEe
Q psy14428 163 PKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEK-NLD-----HEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQ 236 (583)
Q Consensus 163 ~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~-~~~-----~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~ 236 (583)
.+.++|+..++- |.. ..|.+.+++.+..+. +.. ..|....-..+|++++|++++. ++.+++
T Consensus 45 ~~~~~~~sn~yl---gl~-~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~Le~~la~~~g~-------~~~l~~-- 111 (402)
T TIGR01821 45 KDVTVWCSNDYL---GMG-QHPEVLQAMHETLDKYGAGAGGTRNISGTNIPHVELEAELADLHGK-------ESALVF-- 111 (402)
T ss_pred eeEEEeEccCcC---CCC-CCHHHHHHHHHHHHHcCCCCcchhhhhCCcHHHHHHHHHHHHHhCC-------CeEEEE--
Confidence 346777766653 222 456777777666654 111 0122233357788888888752 234554
Q ss_pred cCCchhHHHHHHHHHHHhC--CCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCC-CCcEE
Q psy14428 237 GISGSGSLRVGTAFLERFY--PGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMP-ERSIL 313 (583)
Q Consensus 237 t~G~~~al~l~~~~l~~~~--~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~-~~~~~ 313 (583)
++| ++|...+ +..+. .+++.|+.....+......++..|+++..++. .|++.+++.++... +++++
T Consensus 112 ~sG-~~an~~a---i~~l~~~~~~~~v~~~~~~h~s~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~~ 180 (402)
T TIGR01821 112 TSG-YVANDAT---LATLAKIIPGCVIFSDELNHASMIEGIRHSGAEKFIFRH-------NDVAHLEKLLQSVDPNRPKI 180 (402)
T ss_pred Cch-HHHHHHH---HHHhhCCCCCCEEEEcchHhHHHHHHHHHcCCeEEEECC-------CCHHHHHHHHHhccCCCCeE
Confidence 554 6666553 22222 24777766655666666667777877655543 16677777775443 35789
Q ss_pred EEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHh-cCcEEEEecCcccccccCc
Q psy14428 314 FLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKE-VGQLCLAQSFSKNMGLYGE 392 (583)
Q Consensus 314 i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~-~~~vi~i~S~SK~~~l~Gl 392 (583)
+++++|+||||.+.+ +++|.++|+++++++|+||+|..-.++.. .. .+....+. .+..|+++||||.||++|
T Consensus 181 v~~e~~~~~~G~~~~---l~~i~~l~~~~~~~livDea~~~G~~g~~--g~-g~~~~~~~~~~~div~~t~sKa~g~~G- 253 (402)
T TIGR01821 181 IAFESVYSMDGDIAP---IEEICDLADKYGALTYLDEVHAVGLYGPR--GG-GIAERDGLMHRIDIIEGTLAKAFGVVG- 253 (402)
T ss_pred EEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEeCcccccccCCC--CC-ccchhccCCCCCeEEEEechhhhccCC-
Confidence 999999999999987 66778889999999999999983333321 01 11111111 123688999999999989
Q ss_pred cceEEEEEcCCchhHHHHHHHHHHHHhcc--ccCCChHHHHHHHHHhC
Q psy14428 393 RVGTFSVLTPTSDETERIMSQLKILIRGF--YSNPPIHGARIVTEILS 438 (583)
Q Consensus 393 RiG~lv~~~p~~~~~~~li~~l~~~~~~~--~~~~s~~~q~~~~~~l~ 438 (583)
||+++ + +++++.+....... ..+.++..+.++.+.++
T Consensus 254 --G~i~~--~-----~~~~~~l~~~~~~~~~t~~~~~~~~aaa~aaL~ 292 (402)
T TIGR01821 254 --GYIAA--S-----RKLIDAIRSYAPGFIFTTSLPPAIAAGATASIR 292 (402)
T ss_pred --ceeec--C-----HHHHHHHHHhCcCceecCcCCHHHHHHHHHHHH
Confidence 99988 6 57888887654432 23456666776666554
|
This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives. |
| >PRK00011 glyA serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.8e-15 Score=157.76 Aligned_cols=215 Identities=16% Similarity=0.187 Sum_probs=135.0
Q ss_pred CCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCC---CCC---CHHH----HHHHHHHHhCCCCCCCCCCC
Q psy14428 162 HPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYAN---IGG---DAKF----CKLAAQLAYGEDFPAFKDNR 231 (583)
Q Consensus 162 ~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~---~~G---~~~L----r~aia~~~~~~~g~~~~~~~ 231 (583)
+.+.++|..++.. +++.+.+++..........+++. ..| ...+ |+.++++++ . +..+
T Consensus 24 ~~~~~~l~~~~n~-------~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g----~--~~~~ 90 (416)
T PRK00011 24 QEEHIELIASENF-------VSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFG----A--EYAN 90 (416)
T ss_pred HhcCeeeecccCc-------CCHHHHHHHhchhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhC----C--Ccee
Confidence 4566888776642 45778887655432110001110 012 1222 224455543 2 3455
Q ss_pred eEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHH-----HHhhcCCeEEEEecccCCCCCCChhhHHHHHHc
Q psy14428 232 LAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVR-----FCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKA 306 (583)
Q Consensus 232 I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~-----~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~ 306 (583)
|++ ++| ++|+..+ +..+..+||+|++++|+|..+.. .+...|++++.+++ +++++.+|++.+++.+..
T Consensus 91 i~~--~sg-t~al~~~---l~~l~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~d~~~l~~~i~~ 163 (416)
T PRK00011 91 VQP--HSG-SQANAAV---YFALLKPGDTILGMDLAHGGHLTHGSPVNFSGKLYNVVSYGV-DEETGLIDYDEVEKLALE 163 (416)
T ss_pred eec--CCc-hHHHHHH---HHHhcCCCCEEEEeccccCCccccccccccccceeeEeecCc-CcccCCcCHHHHHHHHHh
Confidence 665 665 6688764 44556779999999999976432 22345678888888 544578999999998842
Q ss_pred CCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCC-CCCCCCCCCchHHHHHHHHhcCcEEEEecCcc
Q psy14428 307 MPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYL-GLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSK 385 (583)
Q Consensus 307 ~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~-~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK 385 (583)
.+++++++++++||+ .. .+++|.++|+++|++||+|++|. ++.+.+. .+..+ + ...+++.||||
T Consensus 164 --~~~k~v~~~~~~~~~--~~---~~~~I~~la~~~~~~livD~a~~~g~~~~g~--~~~~~----~--~~di~~~S~~K 228 (416)
T PRK00011 164 --HKPKLIIAGASAYSR--PI---DFKRFREIADEVGAYLMVDMAHIAGLVAAGV--HPSPV----P--HADVVTTTTHK 228 (416)
T ss_pred --cCCCEEEECCCcCCC--cc---CHHHHHHHHHHcCCEEEEECcchhcccccCc--cCCCC----C--CCcEEEecCCc
Confidence 256777777666653 33 36788999999999999999974 3332221 01111 1 22477999999
Q ss_pred cccccCccceEEEEEcCCchhHHHHHHHHHHHHh
Q psy14428 386 NMGLYGERVGTFSVLTPTSDETERIMSQLKILIR 419 (583)
Q Consensus 386 ~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~ 419 (583)
.+ +|.|.||+++ ++ +++++++.+...
T Consensus 229 ~l--~g~~gg~i~~--~~----~~~~~~l~~~~~ 254 (416)
T PRK00011 229 TL--RGPRGGLILT--ND----EELAKKINSAVF 254 (416)
T ss_pred CC--CCCCceEEEe--CC----HHHHHHHHHHhC
Confidence 76 7999999999 64 367777776543
|
|
| >PRK07269 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.3e-15 Score=153.88 Aligned_cols=192 Identities=12% Similarity=0.122 Sum_probs=130.5
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEE
Q psy14428 204 NIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVG 283 (583)
Q Consensus 204 ~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~ 283 (583)
+.....+|++++|++.+ .+++++ ++|+++|+.++ +. ++++||+|+++.+.|......+.....+-
T Consensus 52 ~~p~~~~le~~lA~leg--------~~~~v~--~~sG~aAi~~~---l~-~l~~GD~VI~~~~~yg~~~~~~~~~~~~~- 116 (364)
T PRK07269 52 KNPTRAKLEETLAAIES--------ADYALA--TSSGMSAIVLA---FS-VFPVGSKVVAVRDLYGGSFRWFNQQEKEG- 116 (364)
T ss_pred CCccHHHHHHHHHHHhC--------CCeEEE--eCCHHHHHHHH---HH-HhCCCCEEEEecCCcCchHHHHHHHHhcC-
Confidence 44567899999999985 357888 99999999985 33 34669999999999987665544321110
Q ss_pred EEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCc
Q psy14428 284 AYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKD 363 (583)
Q Consensus 284 ~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~ 363 (583)
.+.. ++..|++.+++.+ .++++++++++|+||||.+. ++++|+++|+++++++|+|++|..-.+..
T Consensus 117 ~~~~----~~~~d~~~l~~~i---~~~TklV~lesP~NPtg~~~---di~~I~~la~~~gi~vvvD~t~~~~~~~~---- 182 (364)
T PRK07269 117 RFHF----TYANTEEELIAAI---EEDTDIVYIETPTNPLMVEF---DIEKVAKLAHAKGAKVIVDNTFYSPIYQR---- 182 (364)
T ss_pred cEEE----EecCCHHHHHHhc---CcCceEEEEECCCCCCCeee---CHHHHHHHHHHcCCEEEEECCCcccccCC----
Confidence 1111 1234788888877 56889999999999999877 56777888999999999999975432221
Q ss_pred hHHHHHHHHhcCcEEEEecCcccccccCc-cceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHh
Q psy14428 364 AFSLRYFAKEVGQLCLAQSFSKNMGLYGE-RVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEIL 437 (583)
Q Consensus 364 ~~~~~~~~~~~~~vi~i~S~SK~~~l~Gl-RiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l 437 (583)
++.. +--|++.|++|.++-+|- =.|++++ .+ +++.+++.........+.+++..+.+..-|
T Consensus 183 --pl~~-----gaDivv~S~tK~l~g~~d~~gG~v~~--~~----~~l~~~~~~~~~~~G~~~s~~~a~l~~~~L 244 (364)
T PRK07269 183 --PIEL-----GADIVLHSATKYLSGHNDVLAGVVVT--ND----LELYEKLFYNLNTTGAVLSPFDSYLLMRGL 244 (364)
T ss_pred --chhh-----CCcEEEecCceeccCCCcccceEEEe--Cc----HHHHHHHHHHHHHhCCCCCHHHHHHHHcCC
Confidence 2211 234899999999974443 4577776 54 356776664443333344554444444333
|
|
| >cd00615 Orn_deC_like Ornithine decarboxylase family | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.8e-15 Score=154.53 Aligned_cols=170 Identities=12% Similarity=0.004 Sum_probs=129.2
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEE
Q psy14428 204 NIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVG 283 (583)
Q Consensus 204 ~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~ 283 (583)
|..-+.++++.+|++++. .+-+++ |+|+++++..+ +..++.+||+|+++.|+|......+...|++++
T Consensus 57 ~~g~i~~~~~~~A~~~ga-------~~~~~~--~~Gst~a~~~~---l~al~~~gd~Vlv~~~~h~s~~~~~~~~g~~~~ 124 (294)
T cd00615 57 PTGPIKEAQELAARAFGA-------KHTFFL--VNGTSSSNKAV---ILAVCGPGDKILIDRNCHKSVINGLVLSGAVPV 124 (294)
T ss_pred CChHHHHHHHHHHHHhCC-------CCEEEE--cCcHHHHHHHH---HHHcCCCCCEEEEeCCchHHHHHHHHHCCCEEE
Confidence 333367888999998863 234556 89999998874 445667799999999999999999999999999
Q ss_pred EEecccCCC-----CCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCC-CCC
Q psy14428 284 AYRYFDNKT-----NGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLG-LTS 357 (583)
Q Consensus 284 ~v~~~d~~~-----~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~-l~~ 357 (583)
.++. +.+. .++|++.+++.+++ .++++++++++| ||||.+++ +++|+++|++++++||+||+|.. +.+
T Consensus 125 ~v~~-~~~~~~~~~~~i~~~~l~~~l~~-~~~~k~v~l~~p-~~~G~~~d---l~~I~~~~~~~g~~livDeA~~~~~~~ 198 (294)
T cd00615 125 YLKP-ERNPYYGIAGGIPPETFKKALIE-HPDAKAAVITNP-TYYGICYN---LRKIVEEAHHRGLPVLVDEAHGAHFRF 198 (294)
T ss_pred EecC-ccCcccCcCCCCCHHHHHHHHHh-CCCceEEEEECC-CCCCEecC---HHHHHHHHHhcCCeEEEECcchhhhcc
Confidence 8876 3221 37899999998854 246788888898 79999997 56788999999999999999974 444
Q ss_pred CCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEE
Q psy14428 358 GDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSV 399 (583)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~ 399 (583)
.+. . +.. ....+..+++.|++|++ +|+|.|+++.
T Consensus 199 ~~~---~-~~~--~~~~~~div~~S~hK~l--~g~~~~~~l~ 232 (294)
T cd00615 199 HPI---L-PSS--AAMAGADIVVQSTHKTL--PALTQGSMIH 232 (294)
T ss_pred Ccc---c-Ccc--hhhcCCcEEEEchhccc--chHhHHHHHH
Confidence 331 1 111 12246789999999975 8999866654
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. |
| >PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.1e-14 Score=151.47 Aligned_cols=177 Identities=16% Similarity=0.088 Sum_probs=128.6
Q ss_pred CCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhh--HHHHhhcCCeEEE
Q psy14428 207 GDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGH--VRFCTDSRLNVGA 284 (583)
Q Consensus 207 G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~--~~~~~~~G~~~~~ 284 (583)
-..++|+.++++++. +-.++.|++ |.++++++..+ +..+..+||.|++++++|... ...++..|++++.
T Consensus 38 ~~~~~~~~l~~l~~~----~~~~~~i~~--~~~gt~~l~~~---~~~l~~~~~~vlv~~~~~~~~~~~~~~~~~g~~~~~ 108 (368)
T PRK13479 38 LTASVRAKLVAIATG----EEGYTCVPL--QGSGTFSVEAA---IGSLVPRDGKVLVPDNGAYGARIAQIAEYLGIAHVV 108 (368)
T ss_pred HHHHHHHHHHHHhCC----CCCceEEEE--cCCcHHHHHHH---HHhccCCCCeEEEEeCCchHHHHHHHHHHcCCcEEE
Confidence 457788888887752 112356888 99999999985 344455689999998887655 4777889999999
Q ss_pred EecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCch
Q psy14428 285 YRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDA 364 (583)
Q Consensus 285 v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~ 364 (583)
+++ ++ ++++|++.+++.+.. .++.+++++++|+||||...+. ++|.++|++++++||+|+ |..+... +
T Consensus 109 i~~-~~-~~~~d~~~l~~~l~~-~~~~~~v~~~~~~~~tG~~~~~---~~i~~l~~~~~~~livDa-~~~~g~~-----~ 176 (368)
T PRK13479 109 LDT-GE-DEPPDAAEVEAALAA-DPRITHVALVHCETTTGILNPL---DEIAAVAKRHGKRLIVDA-MSSFGAI-----P 176 (368)
T ss_pred EEC-CC-CCCCCHHHHHHHHHh-CCCCcEEEEEcccCccccccCH---HHHHHHHHHcCCEEEEEc-ccccCCc-----c
Confidence 998 43 357899999988854 2356788899999999999884 567888899999999995 4444321 1
Q ss_pred HHHHHHHHhcCcEEEEecCcccc-cccCccceEEEEEcCCchhHHHHHHHHHHH
Q psy14428 365 FSLRYFAKEVGQLCLAQSFSKNM-GLYGERVGTFSVLTPTSDETERIMSQLKIL 417 (583)
Q Consensus 365 ~~~~~~~~~~~~vi~i~S~SK~~-~l~GlRiG~lv~~~p~~~~~~~li~~l~~~ 417 (583)
..+.. .+.-+++.|++|.+ |.+| +||+++ + +++++++...
T Consensus 177 ~~~~~----~~~d~~v~s~~K~l~g~~G--~G~l~~--~-----~~~~~~~~~~ 217 (368)
T PRK13479 177 IDIAE----LGIDALISSANKCIEGVPG--FGFVIA--R-----RSELEACKGN 217 (368)
T ss_pred ccccc----cCceEEEecCccccccCCC--ceEEEE--C-----HHHHHHhhcC
Confidence 12221 12236678999965 6778 599999 6 5677776653
|
|
| >PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-14 Score=155.58 Aligned_cols=215 Identities=14% Similarity=0.124 Sum_probs=148.4
Q ss_pred CCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhh----HHHHhhcCCeE
Q psy14428 207 GDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGH----VRFCTDSRLNV 282 (583)
Q Consensus 207 G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~----~~~~~~~G~~~ 282 (583)
-...|.+.+|++.+. +..++ +++|++|+..+ +..+..+||+|++++|.|+.. ...++..|+++
T Consensus 65 ~~~~Le~~lA~leg~--------~~al~--~~sG~~Ai~~a---l~~ll~~GD~Vlv~~~~y~~t~~~~~~~~~~~Gv~v 131 (431)
T PRK08248 65 TTDVFEKRIAALEGG--------IGALA--VSSGQAAITYS---ILNIASAGDEIVSSSSLYGGTYNLFAHTLPKLGITV 131 (431)
T ss_pred hHHHHHHHHHHHhCC--------CcEEE--ECCHHHHHHHH---HHHHhCCCCEEEEccCchhhHHHHHHHHHHhCCEEE
Confidence 357888899998853 34566 88899999885 334456799999999988654 34456789999
Q ss_pred EEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCC
Q psy14428 283 GAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDK 362 (583)
Q Consensus 283 ~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~ 362 (583)
+.++. + |++.+++.+ .++++++++++|+||||.+++. ++|+++|++++++||+|++|..- +.
T Consensus 132 ~~vd~-~------d~e~l~~ai---~~~tklV~l~sp~NPtG~v~di---~~I~~la~~~gi~vIvD~t~a~~-~~---- 193 (431)
T PRK08248 132 KFVDP-S------DPENFEAAI---TDKTKALFAETIGNPKGDVLDI---EAVAAIAHEHGIPLIVDNTFASP-YL---- 193 (431)
T ss_pred EEECC-C------CHHHHHHhc---CCCCeEEEEECCCCCCCcccCH---HHHHHHHHHcCCEEEEeCCCCcc-cc----
Confidence 88876 1 778888777 5678899999999999999985 46788899999999999998621 11
Q ss_pred chHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhH---------------------H-----H-HHHHHH
Q psy14428 363 DAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDET---------------------E-----R-IMSQLK 415 (583)
Q Consensus 363 ~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~---------------------~-----~-li~~l~ 415 (583)
..++ ..+..+++.|++|.+|.+|.++|++++........ + . +.+...
T Consensus 194 -~~pl-----~~gaDivv~S~tK~lgg~g~~~Gg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (431)
T PRK08248 194 -LRPI-----EHGADIVVHSATKFIGGHGTSIGGVIVDSGKFDWKGSGKFPGLTEPDPSYHGLVYTDAVGEAAYITKARV 267 (431)
T ss_pred -CChh-----HcCCCEEEEcCccccCCCCCceEEEEEeCCccccccccccccccCCccccccchhhhhhchhhHHHHHHH
Confidence 1122 23567889999999999999999988832210000 0 0 011122
Q ss_pred HHHhccccCCChHHHHHHHHHhCC--hhhhhhhhhHHHHHHHHHH
Q psy14428 416 ILIRGFYSNPPIHGARIVTEILSD--PKLKAQCDETERIMSQLKI 458 (583)
Q Consensus 416 ~~~~~~~~~~s~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~l~~ 458 (583)
..........++...+.+.+-++. -.+++|.++..++.+.++.
T Consensus 268 ~~~~~~G~~l~p~~a~l~~rgl~tl~~R~~~~~~nA~~la~~L~~ 312 (431)
T PRK08248 268 QLLRDLGAALSPFNSFLLLQGLETLHLRMERHSENALAVAKFLEE 312 (431)
T ss_pred HHHHhcCCCCCHHHHHHHhcCcCcHHHHHHHHHHHHHHHHHHHHh
Confidence 233344566677777777776764 4566666666655555543
|
|
| >TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial | Back alignment and domain information |
|---|
Probab=99.65 E-value=2e-14 Score=151.16 Aligned_cols=212 Identities=14% Similarity=0.042 Sum_probs=150.3
Q ss_pred CCCCCCCCC---HHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHH--
Q psy14428 200 HEYANIGGD---AKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRF-- 274 (583)
Q Consensus 200 ~~Y~~~~G~---~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~-- 274 (583)
+.|+. .|. ..|++++|++.+. +++++ ++|+++|+..+ +..+..+||.|++++|.|......
T Consensus 42 ~~Y~r-~gnPt~~~lE~~lA~l~g~--------~~~~~--~~sG~~Ai~~a---l~all~~GD~Vl~~~~~y~~t~~~~~ 107 (377)
T TIGR01324 42 LTYGR-RGTLTHFALQDAMCELEGG--------AGCYL--YPSGLAAVTNS---ILAFVKAGDHVLMVDSAYEPTRYFCD 107 (377)
T ss_pred CcccC-CCCccHHHHHHHHHHHhCC--------CcEEE--ECcHHHHHHHH---HHHhcCCCCEEEEcCCCcHHHHHHHH
Confidence 44663 555 5999999998753 57888 99999999985 344567799999999999877653
Q ss_pred --HhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccC
Q psy14428 275 --CTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAY 352 (583)
Q Consensus 275 --~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y 352 (583)
++..|+++..++. . +.+.+++.+ .++++++++.+|+||||.+ .++++|+++|+++++++|+|++|
T Consensus 108 ~~~~~~gi~v~~~d~---~----~~e~l~~~i---~~~tklV~lesp~Np~g~~---~dl~~I~~la~~~g~~livD~t~ 174 (377)
T TIGR01324 108 IVLKRMGVDITYYDP---L----IGEDIATLI---QPNTKVLFLEAPSSITFEI---QDIPAIAKAARNPGIVIMIDNTW 174 (377)
T ss_pred HHHHhcCcEEEEECC---C----CHHHHHHhc---CCCceEEEEECCCCCCCcH---HHHHHHHHHHHHcCCEEEEECCC
Confidence 3556887766643 1 225566655 6789999999999999754 67888899999999999999999
Q ss_pred CCCCCCCCCCchHHHHHHHHhcCcEEEEecCccccccc-CccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHH
Q psy14428 353 LGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLY-GERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGAR 431 (583)
Q Consensus 353 ~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~-GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~ 431 (583)
..-.... ++ ..+--|++.|++|.++-+ +...|++++ . +++++++.........+.++...+
T Consensus 175 a~g~~~~------pl-----~~gaDivv~S~tK~l~G~~d~~gG~v~~--~-----~~~~~~l~~~~~~~G~~l~p~~a~ 236 (377)
T TIGR01324 175 AAGLLFK------PL-----EHGVDISIQAGTKYLVGHSDIMIGTVVA--N-----ARTWDQLREHSYLMGQMVDADDAY 236 (377)
T ss_pred ccccccC------cc-----ccCceEEEecCceeccCCCCceEEEEEe--C-----HHHHHHHHHHHHHhCCCCCHHHHH
Confidence 7533221 11 234568999999999644 478898887 5 356676665545555666777777
Q ss_pred HHHHHhCC--hhhhhhhhhHHHHHHHH
Q psy14428 432 IVTEILSD--PKLKAQCDETERIMSQL 456 (583)
Q Consensus 432 ~~~~~l~~--~~~~~~~~~~~~~~~~l 456 (583)
.+...++. -.++++..+..++.+.+
T Consensus 237 ~~~rgl~tl~~R~~~~~~~a~~la~~L 263 (377)
T TIGR01324 237 TTLRGLRTLGVRLKQHQESSLAIAKWL 263 (377)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 67666664 24555555544444444
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.3e-14 Score=151.73 Aligned_cols=241 Identities=11% Similarity=0.060 Sum_probs=154.7
Q ss_pred CCCccccCCccccCCCCCCCCChHHHHHHHHHhccC-CCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 162 HPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKN-LDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 162 ~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~-~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
+...+|+..|.+....|. -.+.+.+++.+.++.. ....+....-..+|.+.++++.. .+++++ +++|
T Consensus 40 g~~~lD~~~~~~~~~~Gh--~~~~i~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--------~~~~~~--~~SG 107 (401)
T PRK00854 40 GNRYLDCLSAYSAVNQGH--CHPKILAAMVEQAGRLTLTSRAFRNDQLAPLYEELAALTG--------SHKVLP--MNSG 107 (401)
T ss_pred CCEEEEcCcchhhccCCC--CCHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHhhCC--------CCEEEE--eCCc
Confidence 445677776665544443 2366777776666542 11111223334556666665532 257888 9999
Q ss_pred hhHHHHHHHHHHHh-----C-CCC-CEEEEcCCCChhhHHHHhhcCC-------------eEEEEecccCCCCCCChhhH
Q psy14428 241 SGSLRVGTAFLERF-----Y-PGV-KTVYFPTPTWNGHVRFCTDSRL-------------NVGAYRYFDNKTNGLDFAGM 300 (583)
Q Consensus 241 ~~al~l~~~~l~~~-----~-~~g-d~Vlv~~P~y~~~~~~~~~~G~-------------~~~~v~~~d~~~~g~d~~~l 300 (583)
++|++.+..+++.. . ++| ++|++.+-+|......+...+. .+..+|. .|++.+
T Consensus 108 s~A~e~al~~a~~~~~~~~g~~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l 180 (401)
T PRK00854 108 AEAVETAIKAVRKWGYEVKGVPEGQAEIIVCADNFHGRTLSIVGFSTDPDARGGFGPFTPGFRVVPF-------GDAEAL 180 (401)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCCceEEEECCCcCCccHHHHhccCCccccccCCCCCCCeEEeCC-------CCHHHH
Confidence 99999875555432 0 123 6788887777664333222221 2222322 277888
Q ss_pred HHHHHcCCCCcEEEEeCCCCCCCCCCCCH-HHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEE
Q psy14428 301 MEDIKAMPERSILFLQTSSHNPTGVDLSE-DQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCL 379 (583)
Q Consensus 301 ~~~l~~~~~~~~~i~i~~p~NPTG~~~s~-~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~ 379 (583)
++.+ .++++++++++|+||||.++++ +.+++|.++|++||+++|+||+|.++.+.+ ..... ...+....+++
T Consensus 181 e~~i---~~~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~g~~g---~~~~~-~~~g~~~D~~~ 253 (401)
T PRK00854 181 EAAI---TPNTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTG---KLLAE-EHEGIEADVTL 253 (401)
T ss_pred HHHh---CCCeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCc---hHhHH-hhcCCCCCEEE
Confidence 8877 5678999999999999999985 469999999999999999999998876654 11111 11111222333
Q ss_pred EecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhC
Q psy14428 380 AQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILS 438 (583)
Q Consensus 380 i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~ 438 (583)
+||.++...+|+||+++ + +++++.+........++.+++.|.++...|+
T Consensus 254 ---~~K~l~gg~~~ig~v~~--~-----~~~~~~l~~~~~~~t~~~~~~~~aa~~a~L~ 302 (401)
T PRK00854 254 ---IGKALSGGFYPVSAVLS--N-----SEVLGVLKPGQHGSTFGGNPLACAVARAALK 302 (401)
T ss_pred ---ecccccCCccCeEEEEE--c-----HHHHhcccCCCCCCCCCcCHHHHHHHHHHHH
Confidence 47999743479999999 6 5788877654444556779999998888775
|
|
| >PRK00451 glycine dehydrogenase subunit 1; Validated | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.1e-15 Score=160.18 Aligned_cols=208 Identities=13% Similarity=0.105 Sum_probs=140.9
Q ss_pred CccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCC--CCHHHHHHHHHHH---hCCCCCCCCCCCeEEEecC
Q psy14428 164 KKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIG--GDAKFCKLAAQLA---YGEDFPAFKDNRLAIVQGI 238 (583)
Q Consensus 164 ~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~--G~~~Lr~aia~~~---~~~~g~~~~~~~I~i~~t~ 238 (583)
....++.|.++.. .+..+..+.... + ....|.+.+ -...++++++++. .+..|. +++++.+ |+
T Consensus 69 ~~~~lg~g~~~~~-----~p~~~~~~~~~~--~-~~~~y~~~~~~~~~g~~~~~~e~~~~la~l~g~--~~~~v~~--~~ 136 (447)
T PRK00451 69 YPSFLGAGAYDHY-----IPAVVDHIISRS--E-FYTAYTPYQPEISQGTLQAIFEYQTMICELTGM--DVANASM--YD 136 (447)
T ss_pred CcccCcccccCCc-----CcHHHHHHHhch--h-HHHhcCCCCCccchHHHHHHHHHHHHHHHHhCC--CcceEEe--cC
Confidence 5667888887532 344555443222 1 123465511 1234666666433 555554 4568999 99
Q ss_pred CchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhh----cCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEE
Q psy14428 239 SGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTD----SRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILF 314 (583)
Q Consensus 239 G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~----~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i 314 (583)
|+++++..+ ++.....+||+|++++|.|+.+...++. .|++++.+|+ ++ + .+|++.+++.+ .++++++
T Consensus 137 g~t~~~~~~--~~a~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~G~~~~~v~~-~~-~-~~d~~~l~~~i---~~~t~~v 208 (447)
T PRK00451 137 GATALAEAA--LMAVRITKRKKVLVSGAVHPEYREVLKTYLKGQGIEVVEVPY-ED-G-VTDLEALEAAV---DDDTAAV 208 (447)
T ss_pred cHHHHHHHH--HHHHHhcCCCEEEEeCccCHHHHHHHHHHHHhCCcEEEEecC-CC-C-CCCHHHHHHhc---CCCeEEE
Confidence 999998875 3222234599999999999988877665 6999999998 54 3 78999998887 5678999
Q ss_pred EeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEE--eccCCCCCCCCCCCchHHHHHHHHhcCcEEEEe---cCcccccc
Q psy14428 315 LQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFF--DMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQ---SFSKNMGL 389 (583)
Q Consensus 315 ~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~--De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~---S~SK~~~l 389 (583)
++++| ||||.+.+ +++|.++|+++|+++|+ |.+...+.. . ....+..+++. +|||.+++
T Consensus 209 ~l~~p-n~tG~v~~---l~~I~~~a~~~~~~~iv~~d~~~~g~~~------~------~~~~~~D~~~~s~~k~~~~~~~ 272 (447)
T PRK00451 209 VVQYP-NFFGVIED---LEEIAEIAHAGGALFIVGVDPVSLGLLK------P------PGEYGADIVVGEGQPLGIPLSF 272 (447)
T ss_pred EEECC-CCCCeeCC---HHHHHHHHHHCCCEEEEEcChHHhccCC------C------cccCCCCEEEECCCcCCCCCCC
Confidence 99999 99999864 77778899999999888 433211110 0 01123334444 79999999
Q ss_pred cCccceEEEEEcCCchhHHHHHHHH
Q psy14428 390 YGERVGTFSVLTPTSDETERIMSQL 414 (583)
Q Consensus 390 ~GlRiG~lv~~~p~~~~~~~li~~l 414 (583)
.|+|+||+++ + +++++.+
T Consensus 273 ~Gpg~G~l~~--~-----~~~~~~~ 290 (447)
T PRK00451 273 GGPYLGFFAT--R-----KKLVRQM 290 (447)
T ss_pred CCCCchHHHh--h-----HHHHhhC
Confidence 9999999998 6 4677763
|
|
| >PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.8e-15 Score=156.77 Aligned_cols=209 Identities=15% Similarity=0.120 Sum_probs=152.1
Q ss_pred CCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHH----HhhcCCeE
Q psy14428 207 GDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRF----CTDSRLNV 282 (583)
Q Consensus 207 G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~----~~~~G~~~ 282 (583)
-...|.+.+|++.+.. ..++ +++|+.|+.++ +..++++||+|+++.++|...... +...|+++
T Consensus 62 tv~~lE~~la~leg~~--------~av~--~~SG~aAi~~a---l~all~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~v 128 (432)
T PRK06702 62 TLAAFEQKLAELEGGV--------GAVA--TASGQAAIMLA---VLNICSSGDHLLCSSTVYGGTFNLFGVSLRKLGIDV 128 (432)
T ss_pred HHHHHHHHHHHHhCCC--------cEEE--ECCHHHHHHHH---HHHhcCCCCEEEECCCchHHHHHHHHHHHHHCCCEE
Confidence 3678899999988653 3566 99999999985 334467799999999999877665 67789998
Q ss_pred EEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCC
Q psy14428 283 GAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDK 362 (583)
Q Consensus 283 ~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~ 362 (583)
..++. .+|++.+++++ ++++++|++.+|+|||+.+.+ +++|+++|+++|+++|+|++|.-
T Consensus 129 ~~vd~------~~d~~~l~~~I---~~~Tk~I~~e~pgnP~~~v~D---i~~I~~iA~~~gi~livD~T~~t-------- 188 (432)
T PRK06702 129 TFFNP------NLTADEIVALA---NDKTKLVYAESLGNPAMNVLN---FKEFSDAAKELEVPFIVDNTLAT-------- 188 (432)
T ss_pred EEECC------CCCHHHHHHhC---CcCCeEEEEEcCCCccccccC---HHHHHHHHHHcCCEEEEECCCCc--------
Confidence 88754 24888888887 678899999999999999998 77778889999999999999831
Q ss_pred chHHHHHHHHhcCcEEEEecCcc-----cccccCccc-----eEEEEEcCCchhHHHHHH--------------------
Q psy14428 363 DAFSLRYFAKEVGQLCLAQSFSK-----NMGLYGERV-----GTFSVLTPTSDETERIMS-------------------- 412 (583)
Q Consensus 363 ~~~~~~~~~~~~~~vi~i~S~SK-----~~~l~GlRi-----G~lv~~~p~~~~~~~li~-------------------- 412 (583)
+.+.. +-..+--|++.|+|| ..++.|+++ +|..+ ++. ++++
T Consensus 189 --P~~~~-pl~~GADIvv~S~TKy~~Ghsd~l~G~v~~~~~~~w~~~--~~~----~l~~~~~~~~~~~~~~~~~~~~~~ 259 (432)
T PRK06702 189 --PYLCQ-AFEHGANIIVHSTTKYIDGHASSLGGIVIDGGNFDWTNG--KYP----ELVEPDPSYHGVSYVQNFGAAAYI 259 (432)
T ss_pred --hhhCC-hhhcCCCEEEEccccccCCCcceeceEEEeCCCcccccc--ccc----ccccccccccccchhhccchhhHH
Confidence 11111 112344599999999 888999998 67765 432 2221
Q ss_pred --HHHHHHhccccCCChHHHHHHHHHhCC--hhhhhhhhhHHHHHHHHH
Q psy14428 413 --QLKILIRGFYSNPPIHGARIVTEILSD--PKLKAQCDETERIMSQLK 457 (583)
Q Consensus 413 --~l~~~~~~~~~~~s~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~l~ 457 (583)
......+....+.+++..+.+...|+. ..++++.++...+.+.++
T Consensus 260 ~~~~~~~~~~~g~~~sp~~a~l~~rgL~Tl~lR~~r~~~Na~~la~~L~ 308 (432)
T PRK06702 260 VKARVQLLRDYGNCMSPFNAYISNIGLETLHLRMERHSENALAVAKWLA 308 (432)
T ss_pred HHHHHHHHHHccCCCCHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHH
Confidence 111233445668899999999988885 345555555555544444
|
|
| >TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.7e-14 Score=152.17 Aligned_cols=213 Identities=16% Similarity=0.144 Sum_probs=146.5
Q ss_pred CCCCCCC--CCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHH---
Q psy14428 200 HEYANIG--GDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRF--- 274 (583)
Q Consensus 200 ~~Y~~~~--G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~--- 274 (583)
+.|.... -..+|++.++++++. +++++ +++++.++.++ +. ++.+||+|++++|.|..+...
T Consensus 39 ~~Y~r~~~p~~~~le~~la~l~g~--------~~~l~--~~sG~~al~~~---l~-ll~~Gd~Vl~~~~~y~~~~~~~~~ 104 (378)
T TIGR01329 39 YDYTRSGNPTRTALESLLAKLDKA--------DRAFA--FSSGMAALDVI---TR-LLNNGDEIIAGDDLYGGTDRLLTQ 104 (378)
T ss_pred CccCCCCChHHHHHHHHHHHHhCC--------CcEEE--ECCHHHHHHHH---HH-HhCCCCEEEEcCCCchHHHHHHHH
Confidence 4465432 145677777776642 45566 66667788764 33 456799999999999887654
Q ss_pred -HhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCC
Q psy14428 275 -CTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYL 353 (583)
Q Consensus 275 -~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~ 353 (583)
++..|++++.+++ + |++.+++.+ .++++++++++|+||||.+.+ +++|+++|+++++++|+|+++.
T Consensus 105 ~~~~~G~~v~~vd~-~------d~~~le~~i---~~~tklv~le~psnptg~v~d---l~~I~~la~~~g~~vivD~a~~ 171 (378)
T TIGR01329 105 VVPRSGVVVVHVDT-T------DLDKVKAAL---GPKTKLVLLESPTNPLQKIVD---IRKISEMAHAQNALVVVDNTMM 171 (378)
T ss_pred HHHHcCcEEEEeCC-C------CHHHHHHhc---CcCceEEEEECCCCCCCeeec---HHHHHHHHHHcCCEEEEECCCc
Confidence 4557999998876 1 678888777 578899999999999999886 7777889999999999999974
Q ss_pred CCCCCCCCCchHHHHHHHHhcCcEEEEecCccccccc-CccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHH
Q psy14428 354 GLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLY-GERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARI 432 (583)
Q Consensus 354 ~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~-GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~ 432 (583)
.-... .++. .+--+++.|++|.++-+ +++.|++++ .+ +.+.+++.........+.++...+.
T Consensus 172 ~~~~~------~~l~-----~g~Di~v~S~tK~l~G~~~~~~G~v~~--~~----~~~~~~~~~~~~~~G~~~~~~~a~l 234 (378)
T TIGR01329 172 SPLLC------NPLE-----LGADIVYHSATKFLAGHSDVMAGVLAV--KG----EEIAKKVYFLQNSTGSGLAPFDCWL 234 (378)
T ss_pred ccccC------Chhh-----cCCcEEEEecceeccCCccceeEEEEe--Cc----HHHHHHHHHHHHhcCCcCCHHHHHH
Confidence 32211 1221 13358999999988643 588999998 54 3566777766655556666666655
Q ss_pred HHHHhCC--hhhhhhhhhHHHHHHHH
Q psy14428 433 VTEILSD--PKLKAQCDETERIMSQL 456 (583)
Q Consensus 433 ~~~~l~~--~~~~~~~~~~~~~~~~l 456 (583)
+..-++. ..++++..+...+.+.+
T Consensus 235 ~~~~l~tl~~R~e~~~~na~~la~~L 260 (378)
T TIGR01329 235 LLRGIKTLAIRIEKQQENARAIAMFL 260 (378)
T ss_pred HHccCCCHHHHHHHHHHHHHHHHHHH
Confidence 5555543 23444444444444443
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK08064 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.7e-14 Score=152.90 Aligned_cols=201 Identities=15% Similarity=0.172 Sum_probs=139.0
Q ss_pred CHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhH----HHHhhcCCeEE
Q psy14428 208 DAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHV----RFCTDSRLNVG 283 (583)
Q Consensus 208 ~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~----~~~~~~G~~~~ 283 (583)
...|++.+|++.+.. +.+++ ++| +.++.++ +. +..+||+|++++|.|+... ..++..|++++
T Consensus 56 ~~~le~~lA~l~g~~-------~~v~~--~sG-~~ai~~~---l~-~l~~Gd~Vlv~~~~y~~~~~~~~~~~~~~G~~v~ 121 (390)
T PRK08064 56 REALEDIIAELEGGT-------KGFAF--ASG-MAAISTA---FL-LLSKGDHVLISEDVYGGTYRMITEVLSRFGIEHT 121 (390)
T ss_pred HHHHHHHHHHHhCCC-------CeEEE--CCH-HHHHHHH---HH-HhCCCCEEEEccCccchHHHHHHHHHHHcCCEEE
Confidence 578999999998632 34665 665 5577764 33 4456999999999987433 45566899999
Q ss_pred EEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCc
Q psy14428 284 AYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKD 363 (583)
Q Consensus 284 ~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~ 363 (583)
.+++ + |++.+++.+ .++++++++++|+||||.+.+ +++|.++|+++++++|+|++|.......
T Consensus 122 ~v~~-~------d~~~l~~~l---~~~tklV~l~~p~NptG~~~d---l~~I~~la~~~g~~vvvD~a~~~~~~~~---- 184 (390)
T PRK08064 122 FVDM-T------NLEEVAQNI---KPNTKLFYVETPSNPLLKVTD---IRGVVKLAKAIGCLTFVDNTFLTPLLQK---- 184 (390)
T ss_pred EECC-C------CHHHHHHhc---CCCceEEEEECCCCCCcEecc---HHHHHHHHHHcCCEEEEECCCCcccccC----
Confidence 8876 1 677777766 567899999999999999986 5566788899999999999997654321
Q ss_pred hHHHHHHHHhcCcEEEEecCcccccc-cCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCC--h
Q psy14428 364 AFSLRYFAKEVGQLCLAQSFSKNMGL-YGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSD--P 440 (583)
Q Consensus 364 ~~~~~~~~~~~~~vi~i~S~SK~~~l-~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~--~ 440 (583)
++ . .+..+++.|+||.++- +|...|++++ .+ +++++++...........++...+.+..-+++ .
T Consensus 185 --~~-~----~g~Divv~S~tK~~~G~~~~laG~~v~--~~----~~~~~~l~~~~~~~g~~~~~~~a~l~~~gl~tl~~ 251 (390)
T PRK08064 185 --PL-D----LGADVVLHSATKFLAGHSDVLAGLAVV--KD----EELAQKLYFLQNSFGAVLGVQDCWLVLRGLKTLHV 251 (390)
T ss_pred --ch-h----hCCcEEEeecceeccCCccceeEEEEe--CC----HHHHHHHHHHHHhcCCCCCHHHHHHHHcccCcHHH
Confidence 11 1 2356889999999853 4467788777 44 47888888776655555555555554444442 2
Q ss_pred hhhhhhhhHHHH
Q psy14428 441 KLKAQCDETERI 452 (583)
Q Consensus 441 ~~~~~~~~~~~~ 452 (583)
.++++..+...+
T Consensus 252 R~~~~~~~a~~l 263 (390)
T PRK08064 252 RLEHSSETANKI 263 (390)
T ss_pred HHHHHHHHHHHH
Confidence 334443333333
|
|
| >PRK07671 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.7e-14 Score=150.46 Aligned_cols=188 Identities=13% Similarity=0.145 Sum_probs=134.3
Q ss_pred CCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHH----HHhhcCCeE
Q psy14428 207 GDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVR----FCTDSRLNV 282 (583)
Q Consensus 207 G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~----~~~~~G~~~ 282 (583)
-...|++.+|++.+.. ..+++ .+| +.++..+ +. ++.+||+|++++|+|+.... .++..|+++
T Consensus 51 ~~~~Le~~lA~l~g~~-------~~~~~--~sG-~aai~~~---~~-~l~~Gd~Viv~~~~y~~~~~~~~~~~~~~G~~v 116 (377)
T PRK07671 51 TRAALEELIAVLEGGH-------AGFAF--GSG-MAAITAV---MM-LFSSGDHVILTDDVYGGTYRVMTKVLNRFGIEH 116 (377)
T ss_pred HHHHHHHHHHHHhCCC-------ceEEe--CCH-HHHHHHH---HH-HhCCCCEEEECCCccchHHHHHHHHHhcCCeEE
Confidence 3678999999988632 34555 555 5576653 33 45669999999999984432 345578988
Q ss_pred EEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCC
Q psy14428 283 GAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDK 362 (583)
Q Consensus 283 ~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~ 362 (583)
+.++. .|++.+++++ .+++++++++||+||||.+.+ +++|.++|+++++++|+|++|....+..
T Consensus 117 ~~v~~-------~d~~~l~~ai---~~~tklV~le~P~NPtg~~~d---l~~I~~la~~~g~~lvvD~a~~~~~~~~--- 180 (377)
T PRK07671 117 TFVDT-------SNLEEVEEAI---RPNTKAIYVETPTNPLLKITD---IKKISTIAKEKGLLTIVDNTFMTPYWQS--- 180 (377)
T ss_pred EEECC-------CCHHHHHHhc---CCCCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCCccccCC---
Confidence 88764 1778888777 567899999999999998865 6666778899999999999997543321
Q ss_pred chHHHHHHHHhcCcEEEEecCcccccccC-ccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhC
Q psy14428 363 DAFSLRYFAKEVGQLCLAQSFSKNMGLYG-ERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILS 438 (583)
Q Consensus 363 ~~~~~~~~~~~~~~vi~i~S~SK~~~l~G-lRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~ 438 (583)
++ + .+..|++.|+||.++-++ .-.|++++ .+ +++++++...+.......+....+.+..-+.
T Consensus 181 ---p~----~-~g~Divv~S~sK~l~G~~~~~~G~~v~--~~----~~l~~~~~~~~~~~g~~~~~~~a~l~~~~l~ 243 (377)
T PRK07671 181 ---PI----S-LGADIVLHSATKYLGGHSDVVAGLVVV--NS----PELAEDLHFVQNSTGGILGPQDSWLLLRGLK 243 (377)
T ss_pred ---hh----h-hCCeEEEecCcccccCCccceeEEEEe--Cc----HHHHHHHHHHHHhhcCCCCHHHHHHHHcCcC
Confidence 11 1 134699999999997554 35566766 44 4688888877766666667776666665544
|
|
| >PRK09792 4-aminobutyrate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1e-13 Score=148.33 Aligned_cols=296 Identities=10% Similarity=0.054 Sum_probs=175.1
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
.+...+|+..|.+....|.- .|.+.+++.+.++......+ ..-..+....+|+.+...... ...+++.+ +++|
T Consensus 38 dG~~ylD~~~g~~~~~lGh~--~p~v~~ai~~ql~~~~~~~~--~~~~~~~~~~la~~l~~~~p~-~~~~~~~f--~~sG 110 (421)
T PRK09792 38 EGNEYIDFAAGIAVLNTGHR--HPDLVAAVEQQLQQFTHTAY--QIVPYESYVTLAEKINALAPV-SGQAKTAF--FTTG 110 (421)
T ss_pred CCCEEEEccCchhhhcCCCC--CHHHHHHHHHHHHhccCccc--CccCCHHHHHHHHHHHHhCCC-CCCceEEE--eCCh
Confidence 34566888777766656643 46777777666654211111 111223334455555432110 11257888 8899
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHH-hhcCC-------------eEEEEecccCCCCCCC----hhhHHH
Q psy14428 241 SGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFC-TDSRL-------------NVGAYRYFDNKTNGLD----FAGMME 302 (583)
Q Consensus 241 ~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~-~~~G~-------------~~~~v~~~d~~~~g~d----~~~l~~ 302 (583)
++|.+.+..+.+.... ..+|+...-+|.+..... ...|. .++.+|+.+.. .+++ ++.+++
T Consensus 111 seA~e~AlklAr~~tg-r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~v~~p~~~-~~~~~~~~~~~l~~ 188 (421)
T PRK09792 111 AEAVENAVKIARAHTG-RPGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGPFPGSVYHVPYPSDL-HGISTQDSLDAIER 188 (421)
T ss_pred HHHHHHHHHHHHHhcC-CCeEEEECCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCccc-ccccHHHHHHHHHH
Confidence 9999987666655533 467888888877653211 11110 12333331111 2232 356666
Q ss_pred HHHcC--CCCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEE
Q psy14428 303 DIKAM--PERSILFLQTSSHNPTGVDL-SEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCL 379 (583)
Q Consensus 303 ~l~~~--~~~~~~i~i~~p~NPTG~~~-s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~ 379 (583)
.+++. .++..++++..-++|+|..+ +++.+++|.++|+++++++|+||++.+|.+.+ ...+...+....+
T Consensus 189 ~~~~~~~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G---~~~a~~~~~~~pD---- 261 (421)
T PRK09792 189 LFKSDIEAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTG---KLFAMDHYADKPD---- 261 (421)
T ss_pred HHHhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCC---chhHHHhcCCCCc----
Confidence 66531 23445555544599999876 99999999999999999999999999997765 2334444322222
Q ss_pred EecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHH---HHHHHhCChhhhhhhhhHHHHHH-H
Q psy14428 380 AQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGAR---IVTEILSDPKLKAQCDETERIMS-Q 455 (583)
Q Consensus 380 i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~---~~~~~l~~~~~~~~~~~~~~~~~-~ 455 (583)
+.+|||.++ +|+|+||+++ + +++++.+........++.++++|. ++.++++++.+.++.++....+. .
T Consensus 262 i~t~gK~l~-~G~pigav~~--~-----~~i~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~ 333 (421)
T PRK09792 262 LMTMAKSLA-GGMPLSGVVG--N-----ANIMDAPAPGGLGGTYAGNPLAVAAAHAVLNIIDKESLCERANQLGQRLKNT 333 (421)
T ss_pred EEEeehhhc-CCCceEEEEE--c-----HHHHhccCCCCcCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 689999998 9999999999 6 578877765444456678888998 44555555544443333222222 2
Q ss_pred HHHHHhhc-cCCCccc-hhhHHHHhcC
Q psy14428 456 LKILIRGF-YSNPPIH-GARIVTEILS 480 (583)
Q Consensus 456 l~~~~r~~-~~~~p~~-g~~i~~~~l~ 480 (583)
++.+.+.. ....+.+ |.++|..+..
T Consensus 334 l~~l~~~~p~v~~vrG~Gl~~~ie~~~ 360 (421)
T PRK09792 334 LIDAKESVPAIAAVRGLGSMIAAEFND 360 (421)
T ss_pred HHHHHHhCCCcceecccceEEEEEecC
Confidence 22222111 1123444 8888887754
|
|
| >PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.1e-14 Score=153.36 Aligned_cols=157 Identities=17% Similarity=0.137 Sum_probs=118.4
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhh----cCCe
Q psy14428 206 GGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTD----SRLN 281 (583)
Q Consensus 206 ~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~----~G~~ 281 (583)
.-...|++++|++.+. +..++ +++|++|+.++ +..+..+||+|+++.|.|......+.. .|++
T Consensus 58 pt~~~Le~~lA~l~g~--------~~~l~--~ssG~~Ai~~a---l~al~~~Gd~Vl~~~~~Y~~t~~~~~~~l~~~gi~ 124 (425)
T PRK06084 58 PTNDVLEQRVAALEGG--------VGALA--VASGMAAITYA---IQTIAEAGDNIVSVAKLYGGTYNLLAHTLPRIGIE 124 (425)
T ss_pred chHHHHHHHHHHHhCC--------CceeE--ehhHHHHHHHH---HHHHhCCCCEEEEeCCCcchHHHHHHHhcccceeE
Confidence 3457899999998753 23445 77778999885 444556799999999999865554433 4555
Q ss_pred EEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCC
Q psy14428 282 VGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFD 361 (583)
Q Consensus 282 ~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~ 361 (583)
+..++. .|++.+++.+ .++++++++++|+||||.+++ +++|.++|++++++||+|++|.......
T Consensus 125 v~~~d~-------~d~e~le~ai---~~~tklV~lesp~NPtG~v~d---l~~I~~la~~~~i~vVvD~a~a~~~~~~-- 189 (425)
T PRK06084 125 TRFAAH-------DDIAALEALI---DERTKAVFCESIGNPAGNIID---IQALADAAHRHGVPLIVDNTVATPVLCR-- 189 (425)
T ss_pred EEEECC-------CCHHHHHHHh---ccCCcEEEEeCCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCcccccCC--
Confidence 555433 2788888887 457889999999999999998 5777888999999999999997433211
Q ss_pred CchHHHHHHHHhcCcEEEEecCcccccccCccceEEEE
Q psy14428 362 KDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSV 399 (583)
Q Consensus 362 ~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~ 399 (583)
++ ..+--|++.|+||.++.+|.++|.+++
T Consensus 190 ----p~-----~~gaDivv~S~tK~l~G~g~~~gG~v~ 218 (425)
T PRK06084 190 ----PF-----EHGADIVVHSLTKYIGGHGTSIGGIVV 218 (425)
T ss_pred ----hh-----hcCCCEEEECchhcccccccceeEEEE
Confidence 11 123459999999999999999999888
|
|
| >PLN00144 acetylornithine transaminase | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.3e-14 Score=148.72 Aligned_cols=282 Identities=12% Similarity=0.069 Sum_probs=176.8
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
.+...+|+..|.+....|.- .|.+.+++.+.+... .+.......+....+|+.+.+.. ..+++.. +++|
T Consensus 13 dG~~ylD~~~g~~~~~lGh~--~p~v~~ai~~q~~~~---~~~~~~~~~~~~~~la~~l~~~~----~~~~v~f--~~sG 81 (382)
T PLN00144 13 EGKEYLDMAAGIAVNALGHG--DPDWVKAVAEQAGTL---AHVSNVYHTIPQVELAKRLVASS----FADRVFF--CNSG 81 (382)
T ss_pred CCCEEEECCcCHHhccCCCC--CHHHHHHHHHHHHhc---CCccccccCHHHHHHHHHHHhcC----CCCeEEE--eCCc
Confidence 34566788777665555543 367777776666541 11111111234455555554322 2368999 9999
Q ss_pred hhHHHHHHHHHHHhCCC------------CCEEEEcCCCChhhHHHHhhcCCe-------------EEEEecccCCCCCC
Q psy14428 241 SGSLRVGTAFLERFYPG------------VKTVYFPTPTWNGHVRFCTDSRLN-------------VGAYRYFDNKTNGL 295 (583)
Q Consensus 241 ~~al~l~~~~l~~~~~~------------gd~Vlv~~P~y~~~~~~~~~~G~~-------------~~~v~~~d~~~~g~ 295 (583)
++|.+.+..+.+..... ..+|+...-+|.+........... ++.+|. -
T Consensus 82 seA~e~AlklAr~~~~~~~~~~~~~~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~-------~ 154 (382)
T PLN00144 82 TEANEAAIKFARKYQRVRAPDKKDPAASSATEFVSFSNSFHGRTLGALALTSKEQYRTPFEPLMPGVTFVEY-------G 154 (382)
T ss_pred HHHHHHHHHHHHHHHhccCCCCccccccccceEEEECCCcccccHHHHhcCCCccccccCCCCCCCeEEeCC-------C
Confidence 99999876655544210 246888888887654332222111 122222 1
Q ss_pred ChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHH--HHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHh
Q psy14428 296 DFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQ--WRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKE 373 (583)
Q Consensus 296 d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~--~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~ 373 (583)
|++.+++.+.. .+...+|+-|. ||| |.+++.+. +++|.++|++||+++|+||+|.+|...+ ...+...+ ..
T Consensus 155 d~~~l~~~~~~-~~~aavi~eP~-q~~-gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~gr~g---~~~~~~~~-~~ 227 (382)
T PLN00144 155 NLEAARKLIQK-GKTAAVFVEPV-QGE-GGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTG---YLWAHEAY-GV 227 (382)
T ss_pred CHHHHHHhcCC-CCeEEEEEccc-cCC-CCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccc---hHhhhhhc-CC
Confidence 67778776632 23344555566 999 66666555 9999999999999999999999987665 12221111 11
Q ss_pred cCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHH---HHhCChhhhhhhhhHH
Q psy14428 374 VGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVT---EILSDPKLKAQCDETE 450 (583)
Q Consensus 374 ~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~---~~l~~~~~~~~~~~~~ 450 (583)
.+. +.||||.++ +|+|+||+++ + +++++.+........++.+++.+.++. .+++++.+.++.+...
T Consensus 228 ~PD---i~t~sK~l~-~G~pig~v~~--~-----~~~~~~~~~~~~~~T~~~~pl~~aaa~a~l~~i~~~~~~~~~~~~g 296 (382)
T PLN00144 228 EPD---IMTLAKPLA-GGLPIGAVLV--T-----EKVASAINPGDHGSTFAGGPLVCNAALAVLDKISKPGFLASVAKKG 296 (382)
T ss_pred CCC---EEEeccccc-CCcceEEEEE--c-----HHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 122 888999998 9999999999 7 578888765445556788999999888 7777878877777766
Q ss_pred HHHHH-HHHHHhhc--cCCCccchhhHHHHh
Q psy14428 451 RIMSQ-LKILIRGF--YSNPPIHGARIVTEI 478 (583)
Q Consensus 451 ~~~~~-l~~~~r~~--~~~~p~~g~~i~~~~ 478 (583)
+.+.+ ++.++... ....-..|.++|..+
T Consensus 297 ~~l~~~l~~~~~~~~~~~~vrg~G~~~~l~l 327 (382)
T PLN00144 297 EYLRELLRRKLGGNPHVKEVRGVGLLVGIQL 327 (382)
T ss_pred HHHHHHHHHHHhhCCCceeeecCceEEEEEe
Confidence 55433 33333322 112223677777766
|
|
| >PLN02509 cystathionine beta-lyase | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.8e-14 Score=150.47 Aligned_cols=217 Identities=15% Similarity=0.141 Sum_probs=146.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHH----
Q psy14428 199 DHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRF---- 274 (583)
Q Consensus 199 ~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~---- 274 (583)
.+.|+.. |.+ .++++.+++.+..+ .++.++ ++++++++.++ +. +.++||+|++++|.|..+...
T Consensus 124 ~~~Y~r~-gnp-t~~aLE~~lA~leg----~e~ai~--~~SG~aAi~~i---l~-ll~~GD~VI~~~~~y~~t~~ll~~~ 191 (464)
T PLN02509 124 PYDYTRS-GNP-TRDALESLLAKLDK----ADRAFC--FTSGMAALSAV---TH-LIKNGEEIVAGDDVYGGSDRLLSQV 191 (464)
T ss_pred CCccCCC-CCH-HHHHHHHHHHHHhC----CCEEEE--eCcHHHHHHHH---HH-HhCCCCEEEEcCCchhhHHHHHHHH
Confidence 4567665 765 57777777766432 456666 77778887653 33 456699999999999988644
Q ss_pred HhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCC
Q psy14428 275 CTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLG 354 (583)
Q Consensus 275 ~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~ 354 (583)
+...|++++.++. .|++.+++.+ .++++++++++|+||||.+ .++++|+++|+++|+++|+|++|..
T Consensus 192 l~~~G~~v~~vd~-------~d~e~l~~ai---~~~TklV~lesPsNPtG~i---~Dl~~I~~lAk~~g~~lIVD~A~a~ 258 (464)
T PLN02509 192 VPRSGVVVKRVNT-------TNLDEVAAAI---GPQTKLVWLESPTNPRQQI---SDIRKIAEMAHAQGALVLVDNSIMS 258 (464)
T ss_pred HHHCCeEEEEeCC-------CCHHHHHHhC---CcCCeEEEEECCCCCCCCH---HHHHHHHHHHHHcCCEEEEECCccc
Confidence 4567988887754 1677777776 5678999999999999975 6788889999999999999999854
Q ss_pred CCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCc-cceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHH
Q psy14428 355 LTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGE-RVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIV 433 (583)
Q Consensus 355 l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~Gl-RiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~ 433 (583)
-.... ++ + .+-.+++.|++|.++-+|- =.|.+++ .+ +.+.+++...+.......++...+++
T Consensus 259 ~~~~~------pl----~-~gaDivv~S~tK~l~G~gdv~gG~v~~--~~----~~l~~~~~~~~~~~g~~l~p~~A~l~ 321 (464)
T PLN02509 259 PVLSR------PL----E-LGADIVMHSATKFIAGHSDVMAGVLAV--KG----EKLAKEVYFLQNSEGSGLAPFDCWLC 321 (464)
T ss_pred cccCC------hh----h-cCCcEEEecCcccccCCCccceeEEEe--cc----HHHHHHHHHHHHhcCCCcCHHHHHHH
Confidence 43221 11 1 2345889999999875443 4567765 33 35566655444444444566666666
Q ss_pred HHHhCC--hhhhhhhhhHHHHHHHHH
Q psy14428 434 TEILSD--PKLKAQCDETERIMSQLK 457 (583)
Q Consensus 434 ~~~l~~--~~~~~~~~~~~~~~~~l~ 457 (583)
..-++. ..++++.++...+.+.++
T Consensus 322 lr~L~tL~~R~~r~~~nA~~la~~L~ 347 (464)
T PLN02509 322 LRGIKTMALRIEKQQENARKIAMYLS 347 (464)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 665553 344555555545544443
|
|
| >PLN03227 serine palmitoyltransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=8.4e-14 Score=147.72 Aligned_cols=222 Identities=14% Similarity=0.126 Sum_probs=147.4
Q ss_pred hHHHHHHHHHhcc------CCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCC
Q psy14428 184 PSVKEAERRIYEK------NLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPG 257 (583)
Q Consensus 184 ~~v~~a~~~~~~~------~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~ 257 (583)
+.++++..+..++ .....|+...+..+|++++|++++. ++.+++ ++|.+..... +..+..+
T Consensus 15 ~~~~~~~~~a~~~~g~~~~~sr~~yg~~~~~~~LE~~lA~~~g~-------e~al~~--~sG~~a~~~~----i~~l~~~ 81 (392)
T PLN03227 15 PTLRQTALESLSHYGCGSCGPRGFYGTIDAHLELEQCMAEFLGT-------ESAILY--SDGASTTSST----VAAFAKR 81 (392)
T ss_pred HHHHHHHHHHHHHhCCCCcccccccCChHHHHHHHHHHHHHhCC-------CcEEEe--cCcHHHHHHH----HHHhCCC
Confidence 5666666555543 1123377777899999999999974 367777 8877766643 3346777
Q ss_pred CCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcC--------CCCcEEEEeCCCCCCCCCCCCH
Q psy14428 258 VKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAM--------PERSILFLQTSSHNPTGVDLSE 329 (583)
Q Consensus 258 gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~--------~~~~~~i~i~~p~NPTG~~~s~ 329 (583)
||.|+++++.|..+...+...+++++.++..|.+ +++.+.+.+... .++++++++.+++||+|.+.+
T Consensus 82 GD~Vl~~~~~h~s~~~~~~l~~~~~~~~~~~d~~----~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v~~~~G~i~~- 156 (392)
T PLN03227 82 GDLLVVDRGVNEALLVGVSLSRANVRWFRHNDMK----DLRRVLEQVRAQDVALKRKPTDQRRFLVVEGLYKNTGTLAP- 156 (392)
T ss_pred CCEEEEeccccHHHHHHHHHcCCeEEEeCCCCHH----HHHHHHHHhhhhccccccccCCCcEEEEEcCCcCCCCcccC-
Confidence 9999999999999988877788887777652111 334443344311 246789999999999999999
Q ss_pred HHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHH--HHhcCcEEEEecCcccccccCccceEEEEEcCCchhH
Q psy14428 330 DQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYF--AKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDET 407 (583)
Q Consensus 330 ~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~--~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~ 407 (583)
+++|.++|+++|+++|.||+|. +..-+. ........+ ....+..|++.|+||.+| .+.|++++ +
T Consensus 157 --l~~i~~l~~~~g~~livDe~~~-~g~~g~-~G~g~~~~~g~~p~~~~Div~~slsk~~g---~~gg~v~~--~----- 222 (392)
T PLN03227 157 --LKELVALKEEFHYRLILDESFS-FGTLGK-SGRGSLEHAGLKPMVHAEIVTFSLENAFG---SVGGMTVG--S----- 222 (392)
T ss_pred --HHHHHHHHHHcCCEEEEECccc-ccccCC-CCCcHHHHcCCCCCCCceEEEeechhhhh---ccCcEEec--C-----
Confidence 5677899999999999999997 443221 001111111 001234788899999664 66799887 5
Q ss_pred HHHHHHHHHHHhccccCC--ChHHHHHHHHHh
Q psy14428 408 ERIMSQLKILIRGFYSNP--PIHGARIVTEIL 437 (583)
Q Consensus 408 ~~li~~l~~~~~~~~~~~--s~~~q~~~~~~l 437 (583)
+++++.++.......++. +++.+.++...+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~p~~~~aa~~al 254 (392)
T PLN03227 223 EEVVDHQRLSGSGYCFSASAPPFLAKADATAT 254 (392)
T ss_pred HHHHHHHHHhCcCccccCCCCHHHHHHHHHHH
Confidence 577777765433333333 355565555443
|
|
| >TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.9e-13 Score=143.80 Aligned_cols=173 Identities=12% Similarity=0.029 Sum_probs=123.9
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhh--HHHHhhcCCeEEEEe
Q psy14428 209 AKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGH--VRFCTDSRLNVGAYR 286 (583)
Q Consensus 209 ~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~--~~~~~~~G~~~~~v~ 286 (583)
.++|+.++++++. +-.++.|++ |+|+++++..+ +..+..+||.|++..+++... ...++..|++++.++
T Consensus 38 ~~~r~~la~l~~~----~~~~~~i~~--t~~~t~al~~~---~~~l~~~~~~vlv~~~~~~~~~~~~~a~~~g~~~~~v~ 108 (363)
T TIGR02326 38 EQIRQQLLALATA----EEGYTSVLL--QGSGTFAVEAV---IGSAVPKDGKLLVVINGAYGARIVQIAEYLGIPHHVVD 108 (363)
T ss_pred HHHHHHHHHHhCC----CCCceEEEE--cCCCHHHHHHH---HHhcCCCCCeEEEEeCChhhHHHHHHHHHcCCceEEEe
Confidence 4567777777642 111247999 99999999985 334445578877776665444 466788999999999
Q ss_pred cccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHH
Q psy14428 287 YFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFS 366 (583)
Q Consensus 287 ~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~ 366 (583)
+ ++ +..+|++.+++.+.+. ++.+++.+++++||||..++. ++|.++|+++++++|+|+++. ++. .+..
T Consensus 109 ~-~~-~~~~d~~~l~~~l~~~-~~~~~v~~~~~~~~tG~~~~i---~~I~~l~~~~g~~livD~~~~---~g~---~~~~ 176 (363)
T TIGR02326 109 T-GE-VEPPDVVEVEAILAAD-PAITHIALVHCETTTGILNPI---EAVAKLAHRHGKVTIVDAMSS---FGG---IPID 176 (363)
T ss_pred C-CC-CCCCCHHHHHHHHhhC-CCccEEEEEeecCCccccCcH---HHHHHHHHHcCCEEEEEcccc---ccC---cccc
Confidence 8 43 4678999999988642 345678889999999999984 678899999999999998764 222 1122
Q ss_pred HHHHHHhcCcEEEEecCcccc-cccCccceEEEEEcCCchhHHHHHHHHH
Q psy14428 367 LRYFAKEVGQLCLAQSFSKNM-GLYGERVGTFSVLTPTSDETERIMSQLK 415 (583)
Q Consensus 367 ~~~~~~~~~~vi~i~S~SK~~-~l~GlRiG~lv~~~p~~~~~~~li~~l~ 415 (583)
+.. .+--+++.|++|.+ |.+| +||+++ + +++++++.
T Consensus 177 ~~~----~~~D~~~~s~~K~l~~p~G--~G~l~~--~-----~~~~~~~~ 213 (363)
T TIGR02326 177 IAE----LHIDYLISSANKCIQGVPG--FGFVIA--R-----QAELAACK 213 (363)
T ss_pred hhh----cCccEEEecCccccccCCc--ceEEEE--C-----HHHHHHhh
Confidence 322 23347889999987 4456 699999 6 45666543
|
Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli. |
| >PRK05968 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.4e-14 Score=147.89 Aligned_cols=205 Identities=14% Similarity=0.080 Sum_probs=143.2
Q ss_pred CHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhh----HHHHhhcCCeEE
Q psy14428 208 DAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGH----VRFCTDSRLNVG 283 (583)
Q Consensus 208 ~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~----~~~~~~~G~~~~ 283 (583)
..+|++++|++.+.. ..+ + +++|+.|+.++ +..++.+||+|+++.|+|... ...++..|++++
T Consensus 65 ~~~le~~lA~l~g~~-------~av-~--~~sG~~Ai~~a---l~al~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~ 131 (389)
T PRK05968 65 VRAFEEMLAKLEGAE-------DAR-G--FASGMAAISST---VLSFVEPGDRIVAVRHVYPDAFRLFETILKRMGVEVD 131 (389)
T ss_pred HHHHHHHHHHHhCCC-------cEE-E--ECCHHHHHHHH---HHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCceEE
Confidence 578999999998642 234 4 45556788775 334566799999999999864 345666799988
Q ss_pred EEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCc
Q psy14428 284 AYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKD 363 (583)
Q Consensus 284 ~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~ 363 (583)
.++. + |++.+++.+ +++++++++||.|| +++..++++|+++|++++++||+|++|....+..
T Consensus 132 ~vd~-~------d~~~l~~~i----~~tklV~ie~pt~~---~~~~~dl~~i~~la~~~gi~vivD~a~a~~~~~~---- 193 (389)
T PRK05968 132 YVDG-R------DEEAVAKAL----PGAKLLYLESPTSW---VFELQDVAALAALAKRHGVVTMIDNSWASPVFQR---- 193 (389)
T ss_pred EeCC-C------CHHHHHHhc----ccCCEEEEECCCCC---CCcHHHHHHHHHHHHHcCCEEEEECCCcchhccC----
Confidence 8765 1 677777665 35678888765554 5677899999999999999999999997665432
Q ss_pred hHHHHHHHHhcCcEEEEecCcccccccC-ccceEEEEEcCCchhHHHHHHHHHHHHh-ccccCCChHHHHHHHHHhCC--
Q psy14428 364 AFSLRYFAKEVGQLCLAQSFSKNMGLYG-ERVGTFSVLTPTSDETERIMSQLKILIR-GFYSNPPIHGARIVTEILSD-- 439 (583)
Q Consensus 364 ~~~~~~~~~~~~~vi~i~S~SK~~~l~G-lRiG~lv~~~p~~~~~~~li~~l~~~~~-~~~~~~s~~~q~~~~~~l~~-- 439 (583)
++. .+-.+++.|+||.++.+| ++.|++++ + ++++++++.... ......+.+.++++...++.
T Consensus 194 --p~~-----~g~Divv~S~tK~l~g~~~~~gG~i~~--~-----~~~~~~l~~~~~~~~g~~~~~~~A~~~l~~L~tl~ 259 (389)
T PRK05968 194 --PIT-----LGVDLVIHSASKYLGGHSDTVAGVVAG--S-----KEHIARINAEAYPYLGAKLSPFEAWLLLRGLRTLP 259 (389)
T ss_pred --chh-----cCCcEEEeeccccccCCCCeEEEEEEE--C-----HHHHHHHHHHHHHhCCCCCChHHHHHHHcccCcHH
Confidence 111 123478889999998765 58898887 5 478888776543 34456777778877777764
Q ss_pred hhhhhhhhhHHHHHHHHH
Q psy14428 440 PKLKAQCDETERIMSQLK 457 (583)
Q Consensus 440 ~~~~~~~~~~~~~~~~l~ 457 (583)
..++++.+..+++.+.++
T Consensus 260 ~r~~~~~~~a~~la~~L~ 277 (389)
T PRK05968 260 LRMKAHEASALEIARRLK 277 (389)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344454444444444443
|
|
| >cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.1e-14 Score=133.24 Aligned_cols=165 Identities=19% Similarity=0.126 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhH-HHHhhcCCeEEEEec
Q psy14428 209 AKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHV-RFCTDSRLNVGAYRY 287 (583)
Q Consensus 209 ~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~-~~~~~~G~~~~~v~~ 287 (583)
.++++.++++++ ..++++++ ++|+++|+.++ +..+.+++++|++++|+|.... ..++..|++++.++.
T Consensus 3 ~~~~~~l~~~~~------~~~~~~~~--~~~~t~a~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~v~~ 71 (170)
T cd01494 3 EELEEKLARLLQ------PGNDKAVF--VPSGTGANEAA---LLALLGPGDEVIVDANGHGSRYWVAAELAGAKPVPVPV 71 (170)
T ss_pred HHHHHHHHHHcC------CCCCcEEE--eCCcHHHHHHH---HHHhCCCCCEEEEeecccceehhhHHHhcCCEEEEecc
Confidence 578899999884 45678999 89999999985 4445566899999999999888 888999999999988
Q ss_pred ccCCC-CCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHH
Q psy14428 288 FDNKT-NGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFS 366 (583)
Q Consensus 288 ~d~~~-~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~ 366 (583)
+... ...+.+.+++.. ..++++++++++++||+|...+. ++|.++|+++++++|+|++|..+..... .
T Consensus 72 -~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~g~~~~~---~~l~~~~~~~~~~li~D~a~~~~~~~~~--~--- 140 (170)
T cd01494 72 -DDAGYGGLDVAILEELK--AKPNVALIVITPNTTSGGVLVPL---KEIRKIAKEYGILLLVDAASAGGASPAP--G--- 140 (170)
T ss_pred -CCCCccchhhhhhhhcc--ccCceEEEEEecCcCCCCeEcCH---HHHHHHHHHcCCEEEEeccccccccccc--c---
Confidence 4322 111222333322 25678999999999999999876 6778888999999999999998887531 1
Q ss_pred HHHHHHhcCcEEEEecCcccccccCccceEEEE
Q psy14428 367 LRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSV 399 (583)
Q Consensus 367 ~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~ 399 (583)
.. ....+..+++.|++|.++. .|+|++++
T Consensus 141 -~~-~~~~~~d~~~~s~~K~~~~--~~~G~l~~ 169 (170)
T cd01494 141 -VL-IPEGGADVVTFSLHKNLGG--EGGGVVIV 169 (170)
T ss_pred -cc-cccccCCEEEEEcccccCC--CceEEEEe
Confidence 01 1123456888999999973 89999986
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis |
| >TIGR03235 DNA_S_dndA cysteine desulfurase DndA | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.2e-14 Score=145.68 Aligned_cols=190 Identities=16% Similarity=0.096 Sum_probs=131.3
Q ss_pred CChHHHHHHHHHhccCC--CCCCCCCCC------CHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHH
Q psy14428 182 VLPSVKEAERRIYEKNL--DHEYANIGG------DAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLER 253 (583)
Q Consensus 182 ~~~~v~~a~~~~~~~~~--~~~Y~~~~G------~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~ 253 (583)
+++.+.+++.+...... ........+ ..++|+.++++++ +++++|++ |+|+++++.++...+..
T Consensus 10 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g------~~~~~v~~--~~g~t~a~~~~l~~l~~ 81 (353)
T TIGR03235 10 IDPAVAEAMLPWLLEEFGNPSSRTHEFGHNAKKAVERARKQVAEALG------ADTEEVIF--TSGATESNNLAILGLAR 81 (353)
T ss_pred CCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhC------CCCCeEEE--eCCHHHHHHHHHHHHHH
Confidence 56788888877663310 111111112 4678888888875 45789999 99999999886433321
Q ss_pred h-CCCC-CEEEEcCCCChhh---HHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCC
Q psy14428 254 F-YPGV-KTVYFPTPTWNGH---VRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLS 328 (583)
Q Consensus 254 ~-~~~g-d~Vlv~~P~y~~~---~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s 328 (583)
. ..+| +.|++....++.+ ...++..|++++.+++ ++ ++.+|++.+++.+ .++++++++++++||||.+++
T Consensus 82 ~~~~~g~~~vi~~~~~~~s~~~~~~~~~~~G~~v~~v~~-~~-~~~~d~~~l~~~l---~~~~~lv~~~~~~n~tG~~~~ 156 (353)
T TIGR03235 82 AGEQKGKKHIITSAIEHPAVLEPIRALERNGFTVTYLPV-DE-SGRIDVDELADAI---RPDTLLVSIMHVNNETGSIQP 156 (353)
T ss_pred hcccCCCCeeeEcccccHHHHHHHHHHHhcCCEEEEEcc-CC-CCcCCHHHHHHhC---CCCCEEEEEEcccCCceeccC
Confidence 1 1245 7788876555543 4445667999999998 43 4678999998877 457899999999999999998
Q ss_pred HHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEE
Q psy14428 329 EDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSV 399 (583)
Q Consensus 329 ~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~ 399 (583)
+++|.++|+++++++|+|+++.--...- .+ +..+--+++.|..|.+|.+| +|++++
T Consensus 157 ---~~~I~~l~~~~~~~~ivD~a~~~g~~~~------~~----~~~~~D~~~~s~~K~~gp~g--~g~l~~ 212 (353)
T TIGR03235 157 ---IREIAEVLEAHEAFFHVDAAQVVGKITV------DL----SADRIDLISCSGHKIYGPKG--IGALVI 212 (353)
T ss_pred ---HHHHHHHHHHcCCEEEEEchhhcCCccc------cc----cccCCCEEEeehhhcCCCCc--eEEEEE
Confidence 5777888999999999999965322110 11 11233466778899887566 799998
|
This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase. |
| >PRK06918 4-aminobutyrate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.5e-13 Score=143.56 Aligned_cols=271 Identities=12% Similarity=0.070 Sum_probs=163.4
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
.+...+|+..|.+....|.- .|.+.+++.+.++..... ....-..+.+..+|+.+....... ..+++.. +++|
T Consensus 52 dG~~ylD~~~g~~~~~lGh~--~p~v~~ai~~q~~~~~~~--~~~~~~~~~~~~la~~L~~~~p~~-~~~~v~f--~~sG 124 (451)
T PRK06918 52 DGNQYIDFAGAIGTINVGHS--HPKVKEALHKQVDQYIHT--GFNVMMYEPYIELAEKLAALAPGS-FDKKVLF--LNSG 124 (451)
T ss_pred CCCEEEEcCCchhhcCCCCC--CHHHHHHHHHHHHhccCc--cccccccHHHHHHHHHHHHhCCCC-CCCEEEE--cCCc
Confidence 34566888877776666643 467777777766542111 111112244455555554322110 1158999 9999
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhc-CC-------------eEEEEecccCC--CCCCC--------
Q psy14428 241 SGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDS-RL-------------NVGAYRYFDNK--TNGLD-------- 296 (583)
Q Consensus 241 ~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~-G~-------------~~~~v~~~d~~--~~g~d-------- 296 (583)
++|.+.+..+.+.... ...|+...-+|.+........ |. .+..+|..+.. ..++.
T Consensus 125 seA~e~AlklAr~~tg-r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (451)
T PRK06918 125 AEAVENAVKIARKYTK-RQGIISFSRGFHGRTLMTMTMTSKVKPYKFGFGPFAPEVYKAPFPYEYRRPEGLTEEQYDDFM 203 (451)
T ss_pred HHHHHHHHHHHHHHhC-CCcEEEECCCcCccchhhhhhcCCCccccccCCCCCCCcEEcCCCccccccccCchHHHHHHH
Confidence 9999988766665543 467888888887664332221 10 12223321100 01111
Q ss_pred hhhHHHHHHc-CCCCcEEEEeCCCCCCC-CCCC-CHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHh
Q psy14428 297 FAGMMEDIKA-MPERSILFLQTSSHNPT-GVDL-SEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKE 373 (583)
Q Consensus 297 ~~~l~~~l~~-~~~~~~~i~i~~p~NPT-G~~~-s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~ 373 (583)
.+.+++.++. ......+.++..|-+.. |.++ +.+.+++|.++|++||+++|+||+|.+|.+.+ ...++..+ +.
T Consensus 204 ~~~~~~~~~~~~~~~~iAavi~EPi~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~tg~gr~g---~~~a~~~~-~v 279 (451)
T PRK06918 204 IEEFKNFFISEVAPETIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFARTG---KYFAIEHF-DV 279 (451)
T ss_pred HHHHHHHHHhhcCCCceEEEEECcccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCcCccC---ceehhHhc-CC
Confidence 1123332321 12344555566777777 4434 55669999999999999999999999997765 22333333 21
Q ss_pred cCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHH---hCChhhhhhhhhHH
Q psy14428 374 VGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEI---LSDPKLKAQCDETE 450 (583)
Q Consensus 374 ~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~---l~~~~~~~~~~~~~ 450 (583)
... +.||||.++ +|+|+||+++ + +++++.+........++.++++|.++... ++++.+.++.+...
T Consensus 280 ~pD---i~t~sK~l~-~G~pig~v~~--~-----~~i~~~~~~~~~~~T~~g~~l~~aaa~a~l~~i~~~~~~~~~~~~g 348 (451)
T PRK06918 280 VPD---LITVSKSLG-AGVPISGVIG--R-----KEIMDESAPGELGGTYAGSPLGCAAALAVLDIIEKENLNDRAIELG 348 (451)
T ss_pred CCC---EEeeehhhc-CCCccEEEEE--c-----HHHHhccCCCCcCcCCCcCHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 122 558999999 9999999999 7 57888876555556778899999995554 44666666666555
Q ss_pred HHHH
Q psy14428 451 RIMS 454 (583)
Q Consensus 451 ~~~~ 454 (583)
..+.
T Consensus 349 ~~l~ 352 (451)
T PRK06918 349 KVVM 352 (451)
T ss_pred HHHH
Confidence 4433
|
|
| >PTZ00125 ornithine aminotransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.1e-13 Score=141.44 Aligned_cols=254 Identities=12% Similarity=0.052 Sum_probs=155.0
Q ss_pred CCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCch
Q psy14428 162 HPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGS 241 (583)
Q Consensus 162 ~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~ 241 (583)
+...+|+..|.+....|. ..|.+.+++.+.++.. .+.. ... ..+..+.+.+.+....+ .+.+++ +++|+
T Consensus 30 g~~~lD~~~~~~~~~~Gh--~~p~v~~a~~~~~~~~-~~~~-~~~-~~~~~~~~~~~l~~~~~----~~~~~~--~~SGs 98 (400)
T PTZ00125 30 GKKYYDFLSAYSAVNQGH--CHPKILAALINQAQKL-TLTS-RAF-YNDVLGLAEKYITDLFG----YDKVLP--MNSGA 98 (400)
T ss_pred CCEEEEcccCHhhccCCc--CCHHHHHHHHHHHHhc-cccc-ccc-cCHHHHHHHHHHHhCCC----CCEEEE--eCCcH
Confidence 456788877766544443 2467777777665431 1111 100 11233334444433222 257888 88889
Q ss_pred hHHHHHHHHHHHh------C-CCCCEEEEcCCCChhhHHHH-hhcCCe------------EEEEecccCCCCCCChhhHH
Q psy14428 242 GSLRVGTAFLERF------Y-PGVKTVYFPTPTWNGHVRFC-TDSRLN------------VGAYRYFDNKTNGLDFAGMM 301 (583)
Q Consensus 242 ~al~l~~~~l~~~------~-~~gd~Vlv~~P~y~~~~~~~-~~~G~~------------~~~v~~~d~~~~g~d~~~l~ 301 (583)
+|.+.+..+.+.. . ..++.|++.+-+|....... ...+.. +..++. .|++.++
T Consensus 99 ~A~e~al~~~~~~~~~~~~~~~~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~le 171 (400)
T PTZ00125 99 EAGETALKFARKWGYEVKGIPENQAKIIFCNGNFSGRTIGACSASTDPKCYNNFGPFVPGFELVDY-------NDVEALE 171 (400)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCCeEEEECCCcCCccHHHHhhcCCcchhccCCCCCCCceEeCC-------CCHHHHH
Confidence 9988865444321 1 12467888887776654332 222211 111111 2788888
Q ss_pred HHHHcCCCCcEEEEeCCCCCCCCCCCC-HHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEE
Q psy14428 302 EDIKAMPERSILFLQTSSHNPTGVDLS-EDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLA 380 (583)
Q Consensus 302 ~~l~~~~~~~~~i~i~~p~NPTG~~~s-~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i 380 (583)
+.++ .++++++++.+++||||.+++ .+.+++|.++|++||+++|+||+|.++...+ ..... ........+
T Consensus 172 ~~l~--~~~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G---~~~~~-~~~~~~pd~--- 242 (400)
T PTZ00125 172 KLLQ--DPNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTG---KLLAH-DHEGVKPDI--- 242 (400)
T ss_pred HHhC--CCCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccc---hhhHH-HhcCCCCCE---
Confidence 8874 356888888889999999996 5569999999999999999999998886654 11111 111111223
Q ss_pred ecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhC---ChhhhhhhhhH
Q psy14428 381 QSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILS---DPKLKAQCDET 449 (583)
Q Consensus 381 ~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~ 449 (583)
.+|||.++..++|+||+++ + +++++.+........++.+++.|.++.+.++ ++.+.++..++
T Consensus 243 ~~~sK~l~~g~~~ig~v~~--~-----~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~i~~~~~~~~~~~~ 307 (400)
T PTZ00125 243 VLLGKALSGGLYPISAVLA--N-----DDVMLVIKPGEHGSTYGGNPLACAVAVEALEVLKEEKLAENAQRL 307 (400)
T ss_pred EEEcccccCCCcCcEEEEE--c-----HHHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 3478999844459999999 7 5788887665555566778888888866543 33444444433
|
|
| >PRK05967 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.8e-13 Score=143.89 Aligned_cols=214 Identities=13% Similarity=0.060 Sum_probs=149.8
Q ss_pred CCCCCCCCCH---HHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHH---
Q psy14428 200 HEYANIGGDA---KFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVR--- 273 (583)
Q Consensus 200 ~~Y~~~~G~~---~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~--- 273 (583)
+.|+ -.|.| .|++.++.... .++.|++ ++ |++|+..+ +..+.++||.|++++|.|.++..
T Consensus 56 y~Ys-R~gnPt~~~Le~~la~le~-------~~~~v~~--sS-G~aAi~~~---l~all~~GD~Vlv~~~~Y~~~~~l~~ 121 (395)
T PRK05967 56 YTYG-TRGTPTTDALCKAIDALEG-------SAGTILV--PS-GLAAVTVP---FLGFLSPGDHALIVDSVYYPTRHFCD 121 (395)
T ss_pred CccC-CCCChHHHHHHHHHHHHhC-------CCCEEEE--Cc-HHHHHHHH---HHHhcCCCCEEEEccCCcHHHHHHHH
Confidence 4454 34444 46666655432 2345555 54 67898875 34456779999999999999875
Q ss_pred -HHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccC
Q psy14428 274 -FCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAY 352 (583)
Q Consensus 274 -~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y 352 (583)
.++..|+++..++. + +.+.+++++ .++++++++.+|+||++ +..++++|+++|+++|+++|+|++|
T Consensus 122 ~~l~~~Gi~v~~vd~---~----~~e~l~~al---~~~TklV~lesPsNP~l---~v~dl~~I~~la~~~g~~vvVD~t~ 188 (395)
T PRK05967 122 TMLKRLGVEVEYYDP---E----IGAGIAKLM---RPNTKVVHTEAPGSNTF---EMQDIPAIAEAAHRHGAIVMMDNTW 188 (395)
T ss_pred HHHHhcCeEEEEeCC---C----CHHHHHHhc---CcCceEEEEECCCCCCC---cHHHHHHHHHHHHHhCCEEEEECCc
Confidence 45778998888754 1 345666666 56799999999999974 7778999999999999999999999
Q ss_pred CCCCCCCCCCchHHHHHHHHhcCcEEEEecCccccc-ccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHH
Q psy14428 353 LGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMG-LYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGAR 431 (583)
Q Consensus 353 ~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~-l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~ 431 (583)
....+-. ++ ..+--|++.|.+|.++ -.++..|+++. . +++.+++.........+.++...+
T Consensus 189 a~p~~~~------pl-----~~GaDivv~S~tKy~~Gh~d~~~G~v~~--~-----~~~~~~l~~~~~~~G~~~~p~da~ 250 (395)
T PRK05967 189 ATPLYFR------PL-----DFGVDISIHAATKYPSGHSDILLGTVSA--N-----EKCWPQLLEAHGTLGLCAGPDDTY 250 (395)
T ss_pred cCceecC------hh-----HcCCCEEEEecccccCCCCCeeEEEEEc--C-----HHHHHHHHHHHHHcCCCCCHHHHH
Confidence 7543321 12 2345699999999874 24577786665 3 356677766666667778888888
Q ss_pred HHHHHhCC--hhhhhhhhhHHHHHHHHHH
Q psy14428 432 IVTEILSD--PKLKAQCDETERIMSQLKI 458 (583)
Q Consensus 432 ~~~~~l~~--~~~~~~~~~~~~~~~~l~~ 458 (583)
.+..-++. -.+++|.++...+.+.++.
T Consensus 251 l~~rgl~Tl~lR~~~~~~na~~lA~~L~~ 279 (395)
T PRK05967 251 QILRGLRTMGIRLEHHRKSALEIARWLEG 279 (395)
T ss_pred HHHcCcccHHHHHHHHHHHHHHHHHHHHh
Confidence 77777775 3566666666666555543
|
|
| >PRK13393 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.5e-13 Score=141.06 Aligned_cols=238 Identities=13% Similarity=0.028 Sum_probs=148.1
Q ss_pred CCccccCCccccCCCCCCCCChHHHHHHHHHhcc-CCC-----CCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEe
Q psy14428 163 PKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEK-NLD-----HEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQ 236 (583)
Q Consensus 163 ~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~-~~~-----~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~ 236 (583)
.+.++|+...+- |.. ..+.+.+++.+..+. +.. ..+....-..+|.+.+|+++.. +.-+++
T Consensus 45 ~~~~~~~sn~yl---gl~-~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g~-------~~~~~~-- 111 (406)
T PRK13393 45 REVTVWCSNDYL---GMG-QHPAVLAAMHEALDTCGAGAGGTRNISGTNHYHVLLEAELADLHGK-------EAALLF-- 111 (406)
T ss_pred ccEEEeeccccc---CCC-CCHHHHHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHhCC-------CcEEEe--
Confidence 346677665542 221 346677777766654 110 0111111246778888887742 234555
Q ss_pred cCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCC-CCcEEEE
Q psy14428 237 GISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMP-ERSILFL 315 (583)
Q Consensus 237 t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~-~~~~~i~ 315 (583)
++|. .|...+...+.. ..+||.|+.....+......++..|.+++.++.. |++.+++.++... +++++++
T Consensus 112 ~SG~-~An~~ai~~l~~-~~~g~~I~~~~~~H~s~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~~~~~v~ 182 (406)
T PRK13393 112 TSGY-VSNWAALSTLGS-RLPGCVILSDELNHASMIEGIRHSRAEKRIFRHN-------DPADLERKLSDLDPHRPKLVA 182 (406)
T ss_pred CCcH-HHHHHHHHHhhc-CCCCCEEEEccchhHHHHHHHHHcCCeEEEeCCC-------CHHHHHHHHHhccCCCCEEEE
Confidence 5554 566654222211 1247877777777777777777788877666541 6677777665432 3678899
Q ss_pred eCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHh-cCcEEEEecCcccccccCccc
Q psy14428 316 QTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKE-VGQLCLAQSFSKNMGLYGERV 394 (583)
Q Consensus 316 i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~-~~~vi~i~S~SK~~~l~GlRi 394 (583)
+++++||+|.+.+ +++|.++|+++++++|+||+|..-.++.. .. .+....+. .+..|+++||||.+|++|
T Consensus 183 ~~~v~~~~G~~~~---l~~i~~l~~~~~~~livDea~~~g~~g~~--G~-g~~~~~~~~~~~~i~~~tlsKa~g~~G--- 253 (406)
T PRK13393 183 FESVYSMDGDIAP---IAEICDVAEKHGAMTYLDEVHAVGLYGPR--GG-GIAEREGLADRLTIIEGTLAKAFGVMG--- 253 (406)
T ss_pred EcCCCCCCCchhC---HHHHHHHHHHcCCEEEEECCccccccCCC--CC-chhhhcCCCCCCeEEEEeCchhhcccC---
Confidence 9999999999998 66778889999999999999973333321 11 11111111 224688899999999888
Q ss_pred eEEEEEcCCchhHHHHHHHHHHHHhcc--ccCCChHHHHHHHHHhC
Q psy14428 395 GTFSVLTPTSDETERIMSQLKILIRGF--YSNPPIHGARIVTEILS 438 (583)
Q Consensus 395 G~lv~~~p~~~~~~~li~~l~~~~~~~--~~~~s~~~q~~~~~~l~ 438 (583)
||+++ + +++++.+....... ..+.++..+.++...++
T Consensus 254 G~~~~--~-----~~~~~~l~~~~~~~~~t~~~~p~~~aa~~aaL~ 292 (406)
T PRK13393 254 GYITG--S-----AALCDFIRSFASGFIFTTSLPPAVAAGALASVR 292 (406)
T ss_pred ceeeC--C-----HHHHHHHHHhCcCceecCccCHHHHHHHHHHHH
Confidence 99987 6 57888887655432 23455566666666554
|
|
| >PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.7e-13 Score=144.60 Aligned_cols=187 Identities=14% Similarity=0.150 Sum_probs=131.7
Q ss_pred CHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHH----HHhhcCCeEE
Q psy14428 208 DAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVR----FCTDSRLNVG 283 (583)
Q Consensus 208 ~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~----~~~~~G~~~~ 283 (583)
...|++++|++.+.. ..+++ ++| +.|+.++ +. ++.+||+|++++|.|+.... .++..|++++
T Consensus 52 ~~~Le~~la~l~g~~-------~al~~--~SG-~~Al~~~---l~-~l~pGd~Vi~~~~~y~~t~~~~~~~~~~~gi~v~ 117 (380)
T PRK06176 52 RFALEELIADLEGGV-------KGFAF--ASG-LAGIHAV---FS-LFQSGDHVLLGDDVYGGTFRLFDKVLVKNGLSCT 117 (380)
T ss_pred HHHHHHHHHHHhCCC-------CEEEE--CCH-HHHHHHH---HH-HcCCCCEEEEcCCChhHHHHHHHHHHHhcCeEEE
Confidence 678999999987632 23555 555 5588753 33 44679999999999986643 4455788877
Q ss_pred EEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCc
Q psy14428 284 AYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKD 363 (583)
Q Consensus 284 ~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~ 363 (583)
.++. .|++.+++.+ .++++++++.+|+||||.+.+ +++|.++|++++++||+|++|....+..
T Consensus 118 ~vd~-------~d~e~l~~ai---~~~t~lV~lesP~Nptg~~~d---i~~I~~la~~~gi~vivD~t~a~~~~~~---- 180 (380)
T PRK06176 118 IIDT-------SDLSQIKKAI---KPNTKALYLETPSNPLLKITD---LAQCASVAKDHGLLTIVDNTFATPYYQN---- 180 (380)
T ss_pred EcCC-------CCHHHHHHhc---CcCceEEEEECCCCCCceecC---HHHHHHHHHHcCCEEEEECCccccccCC----
Confidence 7654 1778887776 567899999999999999987 5577888999999999999998654332
Q ss_pred hHHHHHHHHhcCcEEEEecCcccccccCc-cceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhC
Q psy14428 364 AFSLRYFAKEVGQLCLAQSFSKNMGLYGE-RVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILS 438 (583)
Q Consensus 364 ~~~~~~~~~~~~~vi~i~S~SK~~~l~Gl-RiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~ 438 (583)
++ + .+--+++.|++|.++.+|- -.|++++ .+ +++.+++...+.......++...+.+..-++
T Consensus 181 --p~----~-~gaDivv~S~tK~l~g~~d~~gG~vv~--~~----~~~~~~~~~~~~~~G~~~~~~~~~l~~~gl~ 243 (380)
T PRK06176 181 --PL----L-LGADIVVHSGTKYLGGHSDVVAGLVTT--NN----EALAQEIAFFQNAIGGVLGPQDSWLLQRGIK 243 (380)
T ss_pred --cc----c-cCCCEEEecCceeccCCccceeeEEEe--cH----HHHHHHHHHHHHHhcCCCCHHHHHHHHhccC
Confidence 11 1 1335899999999976764 4555665 33 3677777766655555556665555555444
|
|
| >PRK07505 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.7e-13 Score=143.70 Aligned_cols=240 Identities=10% Similarity=0.003 Sum_probs=141.2
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCC------CCCCCHHHHHHHHHHHhCCCCCCCCCCCeEE
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYA------NIGGDAKFCKLAAQLAYGEDFPAFKDNRLAI 234 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~------~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i 234 (583)
.+...+|++...+ .|. ...+.+.+++.+.+.......+. ...-..+|++.+++++. . +.++.
T Consensus 44 ~g~~~ld~~s~~~---lgl-~~~p~v~~A~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~la~~~~----~----~~~~~ 111 (402)
T PRK07505 44 DGHTFVNFVSCSY---LGL-DTHPAIIEGAVDALKRTGSLHLSSSRTRVRSQILKDLEEALSELFG----A----SVLTF 111 (402)
T ss_pred CCceEEEeecCCc---cCC-CCCHHHHHHHHHHHHHhCCCCCCccchhhhhHHHHHHHHHHHHHhC----C----CEEEE
Confidence 3556678865332 221 23467777776666431001111 12234567777776653 1 44555
Q ss_pred EecCCchhHHHHHHHHHHH-hCCCCC-EEEEcCCCChhhHH---HHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCC
Q psy14428 235 VQGISGSGSLRVGTAFLER-FYPGVK-TVYFPTPTWNGHVR---FCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPE 309 (583)
Q Consensus 235 ~~t~G~~~al~l~~~~l~~-~~~~gd-~Vlv~~P~y~~~~~---~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~ 309 (583)
++|+ +|...+..++.. +..+|+ .|++.+..|..... .....+.+++.+|.. |++.+++.+ .+
T Consensus 112 --~sG~-~a~~~ai~~~~~~~~~~~~~~vi~~~~~~H~s~~~~~~~~~~~~~v~~~~~~-------d~~~l~~~~---~~ 178 (402)
T PRK07505 112 --TSCS-AAHLGILPLLASGHLTGGVPPHMVFDKNAHASLNILKGICADETEVETIDHN-------DLDALEDIC---KT 178 (402)
T ss_pred --CChH-HHHHHHHHHHHhcccCCCCCCEEEEchhhhHhHHhhhhhhhcCCeEEEeCCC-------CHHHHHHHH---hc
Confidence 6655 455543222221 223233 36677766544321 122235567777651 788888877 34
Q ss_pred CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHH-hcCcEEEEecCccccc
Q psy14428 310 RSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAK-EVGQLCLAQSFSKNMG 388 (583)
Q Consensus 310 ~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~-~~~~vi~i~S~SK~~~ 388 (583)
+++++++++|+||||.+++ +++|.++|+++++++|+||+|....++.. ........+.. ..+++|+++||||.++
T Consensus 179 ~~~~~vl~~p~~~~G~~~~---~~~i~~l~~~~~~~li~DEa~~~~~~g~~-g~~~~~~~~~~~~~d~~i~~~s~sK~~~ 254 (402)
T PRK07505 179 NKTVAYVADGVYSMGGIAP---VKELLRLQEKYGLFLYIDDAHGLSIYGKN-GEGYVRSELDYRLNERTIIAASLGKAFG 254 (402)
T ss_pred CCCEEEEEecccccCCcCC---HHHHHHHHHHcCCEEEEECcccccCcCCC-CCchHHHHcCCCCCCCeEEEEechhhhh
Confidence 5678889999999999998 56677889999999999999866544421 11112222222 3578999999999999
Q ss_pred ccCccceEEEEEcCCchhHHHHHHHHHHHHhcccc--CCChHHHHHHHHHhC
Q psy14428 389 LYGERVGTFSVLTPTSDETERIMSQLKILIRGFYS--NPPIHGARIVTEILS 438 (583)
Q Consensus 389 l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~--~~s~~~q~~~~~~l~ 438 (583)
++| ||+++ ++ +++++.+........+ +++.++..++...++
T Consensus 255 ~~G---g~~~~--~~----~~~~~~~~~~~~~~t~~~~~~~~a~aa~~a~l~ 297 (402)
T PRK07505 255 ASG---GVIML--GD----AEQIELILRYAGPLAFSQSLNVAALGAILASAE 297 (402)
T ss_pred ccC---eEEEe--CC----HHHHHHHHHhCCCceeCCCCCHHHHHHHHHHHH
Confidence 776 88876 44 4788888765433322 334456665555443
|
|
| >TIGR02006 IscS cysteine desulfurase IscS | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.9e-13 Score=143.47 Aligned_cols=190 Identities=14% Similarity=0.127 Sum_probs=134.7
Q ss_pred CChHHHHHHHHHhccCC--CCC------CCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHH
Q psy14428 182 VLPSVKEAERRIYEKNL--DHE------YANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLER 253 (583)
Q Consensus 182 ~~~~v~~a~~~~~~~~~--~~~------Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~ 253 (583)
+++.+.+++.+.+.... ... +.......++|+.++++++ +++++|++ |+|+++++.++...+..
T Consensus 15 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g------~~~~~v~~--~~g~t~a~~~~l~~l~~ 86 (402)
T TIGR02006 15 VDPRVAEKMMPYLTEKFGNPASRSHSFGWEAEEAVENARNQVAELIG------ADSREIVF--TSGATESNNLAIKGIAH 86 (402)
T ss_pred CCHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHHHHHhC------CCCCeEEE--eCCHHHHHHHHHHHHHH
Confidence 45777777766553210 010 0111245677888888874 45789999 99999999986433322
Q ss_pred -hCCCCCEEEEcCCCChhhHHHH---hhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCH
Q psy14428 254 -FYPGVKTVYFPTPTWNGHVRFC---TDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSE 329 (583)
Q Consensus 254 -~~~~gd~Vlv~~P~y~~~~~~~---~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~ 329 (583)
+.++||+|++..++|+.+...+ +..|++++.+++ ++ ++.+|++.+++.+ .++++++++++++||||.+.+
T Consensus 87 ~~~~~g~~Vi~~~~~h~s~~~~~~~~~~~g~~v~~v~~-~~-~~~~d~~~l~~~l---~~~~~lv~v~~~~n~tG~~~~- 160 (402)
T TIGR02006 87 FYKSKGNHIITSKTEHKAVLDTCRYLEREGFEVTYLPP-KS-NGLIDLEELKAAI---RDDTILVSIMHVNNEIGVIQD- 160 (402)
T ss_pred hhcCCCCEEEECCCccHHHHHHHHHHHhcCCEEEEEcc-CC-CCcCCHHHHHHhc---CCCCEEEEEECCCcCceeccc-
Confidence 3456999999999998765443 456999999998 43 4568999998877 456889999999999999987
Q ss_pred HHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEE
Q psy14428 330 DQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSV 399 (583)
Q Consensus 330 ~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~ 399 (583)
+++|.++|+++|+++++|+++.--... ..+ ...+--+++.|..|.+|.+| +|++++
T Consensus 161 --~~~I~~l~~~~g~~livD~a~a~g~~~------~~~----~~~~~D~~~~s~~K~~gp~G--~G~l~~ 216 (402)
T TIGR02006 161 --IAAIGEICRERKVFFHVDAAQSVGKIP------INV----NELKVDLMSISGHKIYGPKG--IGALYV 216 (402)
T ss_pred --HHHHHHHHHHcCCEEEEEcchhcCCcc------cCc----cccCCCEEEEehhhhcCCCc--eEEEEE
Confidence 557788899999999999997532211 011 11233467778889887446 899988
|
This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors. |
| >TIGR03402 FeS_nifS cysteine desulfurase NifS | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.3e-13 Score=144.09 Aligned_cols=188 Identities=17% Similarity=0.114 Sum_probs=131.8
Q ss_pred CChHHHHHHHHHhccCCCCCCCCC---------CCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHH
Q psy14428 182 VLPSVKEAERRIYEKNLDHEYANI---------GGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLE 252 (583)
Q Consensus 182 ~~~~v~~a~~~~~~~~~~~~Y~~~---------~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~ 252 (583)
+++.+.+++.+.... ...++.. .-..++|+.++++++ +++++|++ |+|+++++.++...+.
T Consensus 11 ~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g------~~~~~i~~--t~~~t~a~~~al~~~~ 80 (379)
T TIGR03402 11 VDPEVLEAMLPYFTE--YFGNPSSMHSFGGEVGKAVEEAREQVAKLLG------AEPDEIIF--TSGGTESDNTAIKSAL 80 (379)
T ss_pred CCHHHHHHHHHHHHh--cCCCCCcccHHHHHHHHHHHHHHHHHHHHhC------CCCCeEEE--eCcHHHHHHHHHHHHH
Confidence 567788887766543 1122211 114567777777775 35789999 9999999988643322
Q ss_pred HhCCCCCEEEEcCCCChhhHH---HHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCH
Q psy14428 253 RFYPGVKTVYFPTPTWNGHVR---FCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSE 329 (583)
Q Consensus 253 ~~~~~gd~Vlv~~P~y~~~~~---~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~ 329 (583)
...++||.|++....|+.+.. .++..|++++.+|+ +. ++.+|++.+++.+ .++++++++++++||||.+++.
T Consensus 81 ~~~~~~~~vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~-~~-~g~~~~~~l~~~i---~~~~~lv~i~~~~n~tG~~~~~ 155 (379)
T TIGR03402 81 AAQPEKRHIITTAVEHPAVLSLCQHLEKQGYKVTYLPV-DE-EGRLDLEELRAAI---TDDTALVSVMWANNETGTIFPI 155 (379)
T ss_pred HhcCCCCeEEEcccccHHHHHHHHHHHHcCCEEEEEcc-CC-CCcCCHHHHHHhc---CCCcEEEEEEcccCCeeecccH
Confidence 223457899999888876644 34456999999998 43 3568999998887 5678999999999999999996
Q ss_pred HHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEE
Q psy14428 330 DQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSV 399 (583)
Q Consensus 330 ~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~ 399 (583)
+ +|.++|+++|+++++|+++..-.. +..+ ...+--+++.|..|.+|.+| +|++++
T Consensus 156 ~---~I~~l~~~~g~~vivD~~~~~g~~------~~~~----~~~~~D~~~~s~~K~~gp~G--~g~l~v 210 (379)
T TIGR03402 156 E---EIGEIAKERGALFHTDAVQAVGKI------PIDL----KEMNIDMLSLSGHKLHGPKG--VGALYI 210 (379)
T ss_pred H---HHHHHHHHcCCEEEEECccccccc------ccCc----ccCCCCEEEEcHHHcCCCCc--eEEEEE
Confidence 5 678889999999999999863111 1111 11123466677779777566 788888
|
Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. |
| >TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.5e-12 Score=138.04 Aligned_cols=195 Identities=12% Similarity=0.064 Sum_probs=137.1
Q ss_pred hHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHh-CCCCCEEE
Q psy14428 184 PSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERF-YPGVKTVY 262 (583)
Q Consensus 184 ~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~-~~~gd~Vl 262 (583)
+.-.+++.+.+..+ .|....+..+||++++++++.+ +.++ ++|+++|+.++ +..+ .++||+|+
T Consensus 10 ~~~~~~v~~~~~~~---~~~~g~~~~~le~~la~~~g~~--------~~v~--~~sgt~al~~~---l~al~~~~Gd~Vi 73 (380)
T TIGR03588 10 QDDIDAVVEVLKSD---FLTQGPTVPAFEEALAEYVGAK--------YAVA--FNSATSALHIA---CLALGVGPGDRVW 73 (380)
T ss_pred HHHHHHHHHHHhcC---CccCChhHHHHHHHHHHHHCCC--------eEEE--EcCHHHHHHHH---HHHcCCCCCCEEE
Confidence 44455555555432 2444556799999999999753 3445 66789999985 4444 56799999
Q ss_pred EcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcC-CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHh
Q psy14428 263 FPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAM-PERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQ 341 (583)
Q Consensus 263 v~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~-~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~ 341 (583)
+++|+|..+...++..|++++.+++ +++++.+|++.+++.+.+. .++++++++ .||+|...+ +++|.++|++
T Consensus 74 v~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~d~~~l~~~i~~~~~~~t~~v~~---~~~~G~~~~---~~~i~~l~~~ 146 (380)
T TIGR03588 74 TTPITFVATANCALYCGAKVDFVDI-DPDTGNIDEDALEKKLAAAKGKLPKAIVP---VDFAGKSVD---MQAIAALAKK 146 (380)
T ss_pred eCCcchHHHHHHHHHcCCEEEEEec-CCCcCCcCHHHHHHHhhcccCCCceEEEE---eCCCCccCC---HHHHHHHHHH
Confidence 9999999999999999999999999 6666789999999988421 146777764 457897654 6777888999
Q ss_pred cCeEEEEeccCCCCC-CCCCCCchHHHHHHHHhcCcEEEEecCc--ccccccCccceEEEEEcCCchhHHHHHHHHHHH
Q psy14428 342 RHLYPFFDMAYLGLT-SGDFDKDAFSLRYFAKEVGQLCLAQSFS--KNMGLYGERVGTFSVLTPTSDETERIMSQLKIL 417 (583)
Q Consensus 342 ~~i~iI~De~Y~~l~-~~~~~~~~~~~~~~~~~~~~vi~i~S~S--K~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~ 417 (583)
++++||+|+++.... +++. + +... +. --+.+.||+ |.++. | .-|+++. .+ +++.++++..
T Consensus 147 ~~~~lI~D~a~a~g~~~~~~--~---~g~~-~~--~d~~~~S~~~~K~~~~-~-~GG~v~~--~~----~~~~~~~~~~ 209 (380)
T TIGR03588 147 HGLKIIEDASHALGAEYGGK--P---VGNC-RY--ADATVFSFHPVKIITT-A-EGGAVTT--ND----EELAERMRLL 209 (380)
T ss_pred cCCEEEEECCCcccCccCCE--e---CCCc-cc--cceEEEecCCCCcccc-c-CceEEEE--CC----HHHHHHHHHH
Confidence 999999999997643 3331 1 1110 11 135555654 88863 3 5788887 55 4677776654
|
This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species. |
| >TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.8e-13 Score=140.86 Aligned_cols=200 Identities=15% Similarity=0.157 Sum_probs=140.6
Q ss_pred CCeEEEecCCchh-HHHHHHHHHHHhC---CCCCEEEEcCCCChhhHHHHhhcCCeEEEEec-ccCCCCCCChhhHHHHH
Q psy14428 230 NRLAIVQGISGSG-SLRVGTAFLERFY---PGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRY-FDNKTNGLDFAGMMEDI 304 (583)
Q Consensus 230 ~~I~i~~t~G~~~-al~l~~~~l~~~~---~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~-~d~~~~g~d~~~l~~~l 304 (583)
+..++ ++|+++ ++.++ +..+. ++||.|+++.-++......+...|++++.++. .+++++.+|++.+++++
T Consensus 124 ~~a~~--v~~~Tg~al~la---L~alr~~~~~gd~VI~p~~th~S~~kAi~~~G~~pv~Vd~~~d~~~~~iD~e~Le~aI 198 (444)
T TIGR03531 124 KSAFV--VPLATGMSLSLC---LSALRHKRPKAKYVIWPRIDQKSCIKAISTAGFEPRVIETVLDGDELTTDVEDIERAI 198 (444)
T ss_pred CEEEE--ECCHHHHHHHHH---HHHcCCcCCCCCEEEEECcChHHHHHHHHHcCCeEEEeeeeecCcCCCcCHHHHHHHH
Confidence 35667 888884 66664 33333 25899999999999999999999999999994 25667899999999999
Q ss_pred HcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHH---hcCc-EEEE
Q psy14428 305 KAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAK---EVGQ-LCLA 380 (583)
Q Consensus 305 ~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~---~~~~-vi~i 380 (583)
.....+.+++++.+|+ |+...+.+++++|.++|++|++++|+|++|+.... ....+.. ..++ .+++
T Consensus 199 t~~~~kai~~Vv~Tp~--t~~~g~~ddL~eIa~la~k~gI~lIvDaAyg~~~~--------~~~~~~~~g~~~Grad~vv 268 (444)
T TIGR03531 199 EEIGPDNILCVLSTTS--CFAPRSPDDIEEIAKICANYDIPHIVNNAYGLQSN--------KYMELINKAIKVGRVDAVV 268 (444)
T ss_pred HhccCCCEEEEEEcCC--cCCCcchhCHHHHHHHHHHcCCEEEEECcCcCcCh--------hhhhhhhccccccCCCeEE
Confidence 6443366777777776 77777899999999999999999999999985321 1111111 1122 5667
Q ss_pred ecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhC--ChhhhhhhhhHHHHH
Q psy14428 381 QSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILS--DPKLKAQCDETERIM 453 (583)
Q Consensus 381 ~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~--~~~~~~~~~~~~~~~ 453 (583)
.|++|++.+||. |+++.. .+ +++++++...... ...+...|.+...++. ...+++.+++..+..
T Consensus 269 ~s~hK~l~~pg~--Gg~I~~-~d----~el~~~i~~~y~g--~~~~s~~~~~~~~ll~~G~~g~~~li~~~~~~a 334 (444)
T TIGR03531 269 SSTDKNFMVPVG--GAIIYS-FD----ENFIQEISKSYPG--RASASPSLDVLITLLSLGSKGYLELLKERKEMY 334 (444)
T ss_pred EeCccCCCCCCC--EEEEEE-CC----HHHHHHHHHhccC--CCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 899999998888 777642 44 4778877764322 2344567776666654 345555544444333
|
In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein. |
| >PRK14012 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.3e-13 Score=145.38 Aligned_cols=190 Identities=13% Similarity=0.081 Sum_probs=135.1
Q ss_pred CChHHHHHHHHHhc--cCC--CCC------CCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHH
Q psy14428 182 VLPSVKEAERRIYE--KNL--DHE------YANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFL 251 (583)
Q Consensus 182 ~~~~v~~a~~~~~~--~~~--~~~------Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l 251 (583)
+++.+.+++.+... ... ... +.......++|+.++++++ .++++|++ |+|+++++.++...+
T Consensus 15 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~g------~~~~~v~~--~~g~t~al~~~l~~l 86 (404)
T PRK14012 15 VDPRVAEKMMPYLTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLIG------ADPREIVF--TSGATESDNLAIKGA 86 (404)
T ss_pred CCHHHHHHHHHHHHhcccCcCCCchhhHHHHHHHHHHHHHHHHHHHHcC------cCcCeEEE--eCCHHHHHHHHHHHH
Confidence 55777887766553 110 010 1111235677888888874 45678999 999999999864333
Q ss_pred HH-hCCCCCEEEEcCCCChhhHHHH---hhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCC
Q psy14428 252 ER-FYPGVKTVYFPTPTWNGHVRFC---TDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDL 327 (583)
Q Consensus 252 ~~-~~~~gd~Vlv~~P~y~~~~~~~---~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~ 327 (583)
.. ..++||+|++++++|+.....+ +..|++++.+++ |+ ++.+|++.+++.+ .++++++++++++||||.++
T Consensus 87 ~~~~~~~gd~Vi~~~~~~~s~~~~~~~~~~~g~~~~~v~~-~~-~g~~d~~~l~~~i---~~~t~lv~~~~~~n~tG~~~ 161 (404)
T PRK14012 87 AHFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLDP-QS-NGIIDLEKLEAAM---RDDTILVSIMHVNNEIGVIQ 161 (404)
T ss_pred HHhhcCCCCEEEEecCccHHHHHHHHHHHhCCCEEEEEcc-CC-CCcCCHHHHHHhc---CCCCEEEEEECcCCCccchh
Confidence 22 2466999999999998775544 345999999988 54 4668999999888 56788999999999999988
Q ss_pred CHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEE
Q psy14428 328 SEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSV 399 (583)
Q Consensus 328 s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~ 399 (583)
+ +++|.++|++++++||+|+++.--... ..+. ..+--+++.|+.|.+| |+ ++|++++
T Consensus 162 ~---~~~I~~la~~~g~~vivD~a~~~g~~~------~~~~----~~~~D~~~~s~~K~~g-p~-g~G~l~~ 218 (404)
T PRK14012 162 D---IAAIGEICRERGIIFHVDAAQSVGKVP------IDLS----KLKVDLMSFSAHKIYG-PK-GIGALYV 218 (404)
T ss_pred h---HHHHHHHHHHcCCEEEEEcchhcCCcc------cCcc----cCCCCEEEEehhhccC-CC-ceEEEEE
Confidence 7 567788899999999999998532111 0111 1123356679999887 65 7999998
|
|
| >TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.2e-12 Score=138.31 Aligned_cols=296 Identities=11% Similarity=0.006 Sum_probs=172.3
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
.+...+|+..|.+....|.- .+.+.+++.+.+++.....+. ....+.+..+|+.+..... .-..+++.. +++|
T Consensus 31 dG~~ylD~~~g~~~~~lGh~--~p~v~~a~~~ql~~~~~~~~~--~~~~~~~~~la~~l~~~~p-~~~~~~v~f--~~sG 103 (420)
T TIGR00700 31 DGNRLIDFASGIAVLNIGHS--HPRVVDAVRTQVAEFTHTCFM--VTPYEGYVALAEKLNRIAP-GSGPKKSVF--FNSG 103 (420)
T ss_pred CCCEEEECccCHHhccCCCC--CHHHHHHHHHHHHhccCcccc--ccCChHHHHHHHHHHHhCC-CCCCCEEEE--eCCc
Confidence 34566888888776656643 367777777766542111111 1111223344444433211 011257888 8999
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhc-C--------C-----eEEEEecccCCCC-----CC----Ch
Q psy14428 241 SGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDS-R--------L-----NVGAYRYFDNKTN-----GL----DF 297 (583)
Q Consensus 241 ~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~-G--------~-----~~~~v~~~d~~~~-----g~----d~ 297 (583)
++|.+.+..+.+.... ..+|+...-+|.+........ | . .+..+|..+.... .. ++
T Consensus 104 seA~e~AlklAr~~tg-r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (420)
T TIGR00700 104 AEAVENAVKIARSYTG-RPGVVAFDHGFHGRTNMTMALTAKVMPYKSGFGPFAPEVYRAPLPYPYRDGLLDKQLSTDGEL 182 (420)
T ss_pred HHHHHHHHHHHHHhcC-CCcEEEECCCcCCCcHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccchhHHHHH
Confidence 9999988666655543 467888888886653322221 1 0 1222332110000 00 13
Q ss_pred hhHHHHHH--cCCCCcEEEEeCCCCCCCCCCCCHH-HHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhc
Q psy14428 298 AGMMEDIK--AMPERSILFLQTSSHNPTGVDLSED-QWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEV 374 (583)
Q Consensus 298 ~~l~~~l~--~~~~~~~~i~i~~p~NPTG~~~s~~-~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~ 374 (583)
+.+++.+. ...+...++++-.-+.-+|.+++.+ .+++|.++|++|++++|+||+|.+|.+.+ ...+... .
T Consensus 183 ~~~~~~~~~~~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~gr~g---~~~a~~~----~ 255 (420)
T TIGR00700 183 AAARAIFVIDVGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTG---AMFACEH----E 255 (420)
T ss_pred HHHHHHHHhhcCCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCCcccc---hhHHHhh----c
Confidence 44555543 1234555566544455577766544 59999999999999999999999997765 2222222 2
Q ss_pred CcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHH---hCChhhhhhhhhHHH
Q psy14428 375 GQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEI---LSDPKLKAQCDETER 451 (583)
Q Consensus 375 ~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~---l~~~~~~~~~~~~~~ 451 (583)
+.+..+.+|||.++ +|+|+||+++ + +++++.+........++.++++|.++.+. ++++.+.++......
T Consensus 256 ~~~pDi~~lsK~l~-~G~pig~v~~--~-----~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~~~~~~~~~~g~ 327 (420)
T TIGR00700 256 GPEPDLITTAKSLA-DGLPLSGVTG--R-----AEIMDAPAPGGLGGTYAGNPLACAAALAVLAIIESEGLIERARQIGR 327 (420)
T ss_pred CCCCCEEEeecccc-CCcceEEEEe--c-----HHHHhhcCCCCcCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 33444567999999 9999999999 7 57888886555556678889999888544 455555555555443
Q ss_pred HH-HHHHHHHhh--ccCCCccchhhHHHHhc
Q psy14428 452 IM-SQLKILIRG--FYSNPPIHGARIVTEIL 479 (583)
Q Consensus 452 ~~-~~l~~~~r~--~~~~~p~~g~~i~~~~l 479 (583)
.+ +.++.+... .+......|.++++.+.
T Consensus 328 ~l~~~L~~l~~~~~~~~~vrg~G~~~~i~~~ 358 (420)
T TIGR00700 328 LVTDRLTTLKAVDPRIGDVRGLGAMIAVELV 358 (420)
T ss_pred HHHHHHHHHHhhCCCEEEeeccceEEEEEEe
Confidence 33 333333221 12223334777777664
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein | Back alignment and domain information |
|---|
Probab=99.54 E-value=4e-13 Score=142.02 Aligned_cols=189 Identities=15% Similarity=0.113 Sum_probs=137.5
Q ss_pred CChHHHHHHHHHhccCC-CC---CCCC----CCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHH
Q psy14428 182 VLPSVKEAERRIYEKNL-DH---EYAN----IGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLER 253 (583)
Q Consensus 182 ~~~~v~~a~~~~~~~~~-~~---~Y~~----~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~ 253 (583)
+++.+.+++.+...... .. .|.. ..+..++|+.++++++.. .+++|++ |+|+++++.++ +..
T Consensus 12 ~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-----~~~~v~~--~~g~t~al~~~---~~~ 81 (376)
T TIGR01977 12 KPDEVYEAMADFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLFNAP-----SSAHVVF--TNNATTALNIA---LKG 81 (376)
T ss_pred CCHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHHHHHHHHHHhCcC-----CCCeEEE--eCCHHHHHHHH---HHh
Confidence 45678878776665421 11 2332 256778999999998631 3458999 99999999985 444
Q ss_pred hCCCCCEEEEcCCCChhhHH----HHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCH
Q psy14428 254 FYPGVKTVYFPTPTWNGHVR----FCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSE 329 (583)
Q Consensus 254 ~~~~gd~Vlv~~P~y~~~~~----~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~ 329 (583)
+..+||+|++++++|..+.. +.+..|.+++.++. +. ++.+|++.+++.+ .++++++++++||||||.+++.
T Consensus 82 ~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~-~~-~~~~d~~~l~~~~---~~~~~~v~~~~~~n~tG~~~~~ 156 (376)
T TIGR01977 82 LLKEGDHVITTPMEHNSVARPLECLKEQIGVEITIVKC-DN-EGLISPERIKRAI---KTNTKLIVVSHASNVTGTILPI 156 (376)
T ss_pred ccCCCCEEEECcchhhHHHHHHHHHHHHcCcEEEEEec-CC-CCCcCHHHHHHhc---CCCCeEEEEECCCCCccccCCH
Confidence 66779999999999877643 44556999999988 43 4568999998887 4578899999999999999985
Q ss_pred HHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEE
Q psy14428 330 DQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSV 399 (583)
Q Consensus 330 ~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~ 399 (583)
+ +|.++|+++++++|+|+++..-...- .+ ...+--+++.|+.|.++.|. -+|.+++
T Consensus 157 ~---~i~~l~~~~~~~livD~a~~~g~~~~------~~----~~~~~D~~~~s~~K~l~~p~-g~g~l~~ 212 (376)
T TIGR01977 157 E---EIGELAQENGIFFILDAAQTAGVIPI------DM----TELAIDMLAFTGHKGLLGPQ-GTGGLYI 212 (376)
T ss_pred H---HHHHHHHHcCCEEEEEhhhccCccCC------Cc----hhcCCCEEEecccccccCCC-CceEEEE
Confidence 4 56888999999999999986433210 11 11234578889999886443 3677777
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown. |
| >TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA | Back alignment and domain information |
|---|
Probab=99.54 E-value=9.6e-13 Score=138.95 Aligned_cols=182 Identities=13% Similarity=0.101 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHh---CCCCCEEEEcCCCChhhHHHHhhcCCeEEEE
Q psy14428 209 AKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERF---YPGVKTVYFPTPTWNGHVRFCTDSRLNVGAY 285 (583)
Q Consensus 209 ~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~---~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v 285 (583)
.++|+.+|++++ ++++++++ ++|+++++.++...+..+ ..+||+|++++|+|..+...++..|++++.+
T Consensus 62 ~~~~~~la~~~g------~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~g~~vl~~~~~h~~~~~~~~~~G~~~~~v 133 (373)
T TIGR03812 62 EEVVGSLGNLLH------LPDAYGYI--VSGGTEANIQAVRAAKNLAREEKRTPNIIVPESAHFSFEKAAEMLGLELRYA 133 (373)
T ss_pred HHHHHHHHHHhC------CCCCCeEE--eccHHHHHHHHHHHHHHHHhccCCCcEEEECCcchHHHHHHHHHcCCeEEEE
Confidence 456666666664 34578888 999999987753333222 1357999999999999999999999999999
Q ss_pred ecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCC--CCc
Q psy14428 286 RYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDF--DKD 363 (583)
Q Consensus 286 ~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~--~~~ 363 (583)
+. ++ ++.+|++.+++.+. +++..++..+|+||||.+.+ +++|.++|+++++++|+|++|..+...-. ...
T Consensus 134 ~~-~~-~~~~d~~~l~~~l~---~~~~~vv~~~~~~~tG~~~~---~~~i~~l~~~~~~~livD~a~~~~~~~~~~~~~~ 205 (373)
T TIGR03812 134 PL-DE-DYTVDVKDVEDLID---DNTIGIVGIAGTTELGQIDD---IEELSKIALENGIYLHVDAAFGGFVIPFLKKGYN 205 (373)
T ss_pred ee-CC-CCCcCHHHHHHHHh---hCcEEEEEECCCCCCCccCC---HHHHHHHHHHcCCeEEEEcCchhHHHHHHhcCCC
Confidence 98 43 46789999998884 34443444458999999876 55667788899999999999975532100 000
Q ss_pred hHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHH
Q psy14428 364 AFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLK 415 (583)
Q Consensus 364 ~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~ 415 (583)
...+ .+ ...+--.+..|..| +++++.|+|+++. .+ +++++.+.
T Consensus 206 ~~~~-d~-~~~~~d~~~~s~~K-~~~~~~~~G~~~~--~~----~~~~~~l~ 248 (373)
T TIGR03812 206 PPPF-DF-SLPGVQSITIDPHK-MGLSPIPAGGILF--RS----KSYLKYLS 248 (373)
T ss_pred CCCc-cc-cCCCCCEEEECccc-cCCCcCCceEEEE--eC----HHHHhhhc
Confidence 0000 00 00011123345669 7778899997776 23 36776664
|
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions. |
| >PRK13520 L-tyrosine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-12 Score=138.41 Aligned_cols=206 Identities=16% Similarity=0.154 Sum_probs=135.6
Q ss_pred CChHHHHHHHHHhccCC-CCCCCCCCCCH----HHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhC-
Q psy14428 182 VLPSVKEAERRIYEKNL-DHEYANIGGDA----KFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFY- 255 (583)
Q Consensus 182 ~~~~v~~a~~~~~~~~~-~~~Y~~~~G~~----~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~- 255 (583)
+.+.+.+++.+...... ...+ ..|.. ++++.++++++ .+++++++ ++|+++++..+...+....
T Consensus 32 ~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~la~~~g------~~~~~~~~--~~ggt~a~~~a~~~~~~~~~ 101 (371)
T PRK13520 32 PHPIARKAHEMFLETNLGDPGL--FPGTAKLEEEAVEMLGELLH------LPDAYGYI--TSGGTEANIQAVRAARNLAK 101 (371)
T ss_pred chHHHHHHHHHHHhcCCCCccc--CccHHHHHHHHHHHHHHHhC------CCCCCeEE--ecCcHHHHHHHHHHHHhhcc
Confidence 44666677666554311 1111 12333 45666666553 33567888 9999999887533332221
Q ss_pred CCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHH
Q psy14428 256 PGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQL 335 (583)
Q Consensus 256 ~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l 335 (583)
.++|+|++.++.+..+...++..|++++.+|. ++ ++.+|++.+++.+. +++++++++.++||||.+.+ +++|
T Consensus 102 ~~~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~-~~-~~~~d~~~l~~~i~---~~~~~vi~~~~~~~tG~~~~---l~~I 173 (371)
T PRK13520 102 AEKPNIVVPESAHFSFDKAADMLGVELRRAPL-DD-DYRVDVKAVEDLID---DNTIGIVGIAGTTELGQVDP---IPEL 173 (371)
T ss_pred CCCceEEecCcchHHHHHHHHHcCceEEEecC-CC-CCcCCHHHHHHHHh---hCCEEEEEEcCCcCCcccCC---HHHH
Confidence 24789999999999999888999999999998 43 35789999999883 45666677788999999987 6677
Q ss_pred HHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHH
Q psy14428 336 AVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLK 415 (583)
Q Consensus 336 ~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~ 415 (583)
.++|+++|+++++|++|..+..+-. .....+ .+ ...+-..+..|..| ++++|.++|++++ .+ +++++.+.
T Consensus 174 ~~l~~~~g~~livD~a~~~~~~~~~-~~~~~~-~~-~~~~vd~~~~s~~K-~~~a~~~~G~~~~--~~----~~~~~~l~ 243 (371)
T PRK13520 174 SKIALENGIFLHVDAAFGGFVIPFL-DDPPNF-DF-SLPGVDSITIDPHK-MGLAPIPAGGILF--RD----ESYLDALA 243 (371)
T ss_pred HHHHHHcCCCEEEEecchhHHHHhh-cCCCCc-cc-cCCCCceEEECCcc-ccCccCCceEEEE--cC----HHHHHhhc
Confidence 8889999999999999986642110 000000 00 01111223345667 6678899999997 43 35666654
|
|
| >PRK08360 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.7e-12 Score=138.04 Aligned_cols=254 Identities=16% Similarity=0.150 Sum_probs=159.1
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
.+...+|+..|.+....|.- .+.+.+++.+.+... ..+.......+.+..+|+.+..... ..-+++.+ +++|
T Consensus 39 dG~~ylD~~~g~~~~~lGh~--~p~v~~Ai~~ql~~~--~~~~~~~~~~~~~~~la~~L~~~~p--~~~~~v~f--~~sG 110 (443)
T PRK08360 39 EGNEYIDFLSDAAVQNVGHN--NPRVVKAIKEQTDKL--IHYTPIYGFPVEPLLLAEKLIEIAP--GDNPKVSF--GLSG 110 (443)
T ss_pred CCCEEEEccccHhhcccCCC--CHHHHHHHHHHHHhc--cCccccccCcHHHHHHHHHHHHhCC--CCCCEEEE--cCCH
Confidence 35567888888776666653 467777777766541 1122222223445556666654321 11258999 9999
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEcCCCChhhH-HHHhhcCC------------eEEEEecccCCC--CC--------CCh
Q psy14428 241 SGSLRVGTAFLERFYPGVKTVYFPTPTWNGHV-RFCTDSRL------------NVGAYRYFDNKT--NG--------LDF 297 (583)
Q Consensus 241 ~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~-~~~~~~G~------------~~~~v~~~d~~~--~g--------~d~ 297 (583)
++|.+.+..+.+.... ...|+.-.-+|.+.. ......|. .+..+|..+... ++ -++
T Consensus 111 sEAve~AlklAr~~tg-r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (443)
T PRK08360 111 SDANDGAIKFARAYTK-RRKILSYLRSYYGSTYGAMSLTGLDFPVRALVGELSDVHYIPYPDCYRCPFGKEPGSCKMECV 189 (443)
T ss_pred HHHHHHHHHHHHHhcC-CCeEEEEeCCcCCcCHHHHHhcCCCcccccCCCCCCCcEEEeCCccccccccCchhhhHHHHH
Confidence 9999988766655543 467777776665542 11111111 123333311100 00 123
Q ss_pred hhHHHHHHcC--CCCcEEEEeCCCCCCCCCCCC-HHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhc
Q psy14428 298 AGMMEDIKAM--PERSILFLQTSSHNPTGVDLS-EDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEV 374 (583)
Q Consensus 298 ~~l~~~l~~~--~~~~~~i~i~~p~NPTG~~~s-~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~ 374 (583)
+.+++.+++. .++..++++..-+||+|.+++ .+.+++|.++|++||+++|+||+|.+|...+ ...+...+ +..
T Consensus 190 ~~~~~~l~~~~~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~G---~~~a~~~~-~~~ 265 (443)
T PRK08360 190 EYIKEKFEGEVYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTG---KWFAIEHF-GVE 265 (443)
T ss_pred HHHHHHHHhccCCCCeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCc---cchhhhhc-CCC
Confidence 3455556432 245667766656799999887 5579999999999999999999999987654 22222222 223
Q ss_pred CcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhC
Q psy14428 375 GQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILS 438 (583)
Q Consensus 375 ~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~ 438 (583)
+.++ +|||.++ +|+|+||+++ + +++++.+.........+.+++.|.++...++
T Consensus 266 pDii---tlsK~l~-~G~pigav~~--~-----~~i~~~~~~~~~~~T~~~~p~~~aaa~a~l~ 318 (443)
T PRK08360 266 PDII---TLGKPLG-GGLPISATIG--R-----AEIMDSLPPLAHAFTLSGNPVASAAALAVIE 318 (443)
T ss_pred CCEE---Eeccccc-CCceeEEEEE--c-----HHHHhhhcCCCCCCCCCcCHHHHHHHHHHHH
Confidence 3444 6799999 9999999999 6 5788888655444566678888888877765
|
|
| >PRK04366 glycine dehydrogenase subunit 2; Validated | Back alignment and domain information |
|---|
Probab=99.51 E-value=7e-13 Score=144.20 Aligned_cols=206 Identities=14% Similarity=0.114 Sum_probs=146.2
Q ss_pred cCCccccCCCCCCCCChHHHHHHHHHhccCCCCCC---CCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHH
Q psy14428 168 LGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEY---ANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSL 244 (583)
Q Consensus 168 l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y---~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al 244 (583)
++.|.++.. .++.+.+++.+.......+.| +..+|..+++.++.+++.+..|.+ ...+.. ++|+.+.+
T Consensus 73 ~g~G~~~~~-----~~p~i~~~~~~~~~~~~~tpYq~e~~sqG~lel~~~~~~~la~l~G~~--~~~l~~--~~GA~a~~ 143 (481)
T PRK04366 73 YPLGSCTMK-----YNPKINEKVARLPGFAELHPLQPEETVQGALELMYELQEWLKEITGMD--AVTLQP--AAGAHGEL 143 (481)
T ss_pred ecCcccCCC-----CCHHHHHHHHhCcchhcCCCCCChhhhhHHHHHHHHHHHHHHHHhCCC--ceEEEe--CcHHHHHH
Confidence 666766532 446676666554222224567 467899999999999999888764 334443 77777666
Q ss_pred HHHHHHHHHhCCCCC----EEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCC
Q psy14428 245 RVGTAFLERFYPGVK----TVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSH 320 (583)
Q Consensus 245 ~l~~~~l~~~~~~gd----~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~ 320 (583)
..+..+...+.++|| +|++++|.|+.+...++..|++++.+|+ ++ ++.+|++.+++.+ .++++++++++||
T Consensus 144 ~~l~~~r~~~~~~Gd~~~~~Vlv~~~~hp~~~~~~~~~G~~vv~v~~-~~-~~~~D~e~L~~~i---~~~t~~V~v~~Pn 218 (481)
T PRK04366 144 TGLLMIRAYHEARGDTKRTEVIVPDSAHGTNPASAAMAGFKVVEIPS-NE-DGLVDLEALKAAV---GEDTAALMLTNPN 218 (481)
T ss_pred HHHHHHHHHhhccCcCCCCEEEEcCCccHhHHHHHHHcCCEEEEeec-CC-CCCcCHHHHHhhc---ccCCeEEEEeCCC
Confidence 543211112344466 9999999999999999999999999998 53 4678999998877 5678888899988
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCccccccc----CccceE
Q psy14428 321 NPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLY----GERVGT 396 (583)
Q Consensus 321 NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~----GlRiG~ 396 (583)
|||.. .+++++|+++|+++++++++|.++..-..+- . . +...+--++++|..|.++.| |--+|+
T Consensus 219 -~tG~~--~~dl~eI~~~a~~~gal~iVD~a~~~~~~g~----~-~----~~~~GaD~~~~~~hK~l~~P~g~Ggp~~G~ 286 (481)
T PRK04366 219 -TLGLF--ERNILEIAEIVHEAGGLLYYDGANLNAILGK----A-R----PGDMGFDVVHLNLHKTFSTPHGGGGPGSGP 286 (481)
T ss_pred -Ccccc--chHHHHHHHHHHHcCCEEEEEecChhhhccc----C-C----ccccCCCEEEEechhhcCCCCCCCCCCeee
Confidence 99954 4579999999999999999999973211110 0 0 11234567888888998755 456788
Q ss_pred EEE
Q psy14428 397 FSV 399 (583)
Q Consensus 397 lv~ 399 (583)
+.+
T Consensus 287 l~~ 289 (481)
T PRK04366 287 VGV 289 (481)
T ss_pred eee
Confidence 887
|
|
| >PRK04612 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.9e-12 Score=136.40 Aligned_cols=249 Identities=9% Similarity=0.014 Sum_probs=161.6
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
.+...+|+..|.+....|.- .|.+.+++.+.++.. ..+.+.. ..+....+++.+..... ..+++.+ +++|
T Consensus 38 dG~~ylD~~~g~~~~~lGh~--~p~v~~ai~~q~~~~--~~~~~~~-~~~~~~~la~~L~~~~~---~~~~v~f--~~sG 107 (408)
T PRK04612 38 QGREYLDLAAGIAVCGLGHN--DPDLVAALTEQAGKL--WHTSNVF-YSAPPLKLAEELVTASR---FAEKVFL--CNSG 107 (408)
T ss_pred CCCEEEEcCccHhhccCCCC--CHHHHHHHHHHHHhc--ccccccc-CCHHHHHHHHHHHhhCC---CCCEEEE--cCch
Confidence 45667898888776666643 467777777666531 1111111 12334455666543221 1268999 9999
Q ss_pred hhHHHHHHHHHHHhC--C---C-CCEEEEcCCCChhhHHHHh-hcCCeEEE---EecccC---CCCCCChhhHHHHHHcC
Q psy14428 241 SGSLRVGTAFLERFY--P---G-VKTVYFPTPTWNGHVRFCT-DSRLNVGA---YRYFDN---KTNGLDFAGMMEDIKAM 307 (583)
Q Consensus 241 ~~al~l~~~~l~~~~--~---~-gd~Vlv~~P~y~~~~~~~~-~~G~~~~~---v~~~d~---~~~g~d~~~l~~~l~~~ 307 (583)
++|.+.+..+.+... . + ..+|+...-+|.+...... ..|..... -|+.+. -.+ .|++.+++.++
T Consensus 108 seA~e~AlklAr~~~~~~g~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~-~d~~~l~~~~~-- 184 (408)
T PRK04612 108 TEANEAAIKLVRKWASSQGRPADKRVIVTFRGSFHGRTLAAVTATAQPKYQEGYEPLPGGFRYVDF-NDVEALEAAMA-- 184 (408)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCCcEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCCceEcCC-CCHHHHHHhhC--
Confidence 999998766655542 1 1 2468888888876543222 22211100 011000 001 16677777662
Q ss_pred CCCcEEEEeCCCCCCCCCCCC--HHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcc
Q psy14428 308 PERSILFLQTSSHNPTGVDLS--EDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSK 385 (583)
Q Consensus 308 ~~~~~~i~i~~p~NPTG~~~s--~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK 385 (583)
......++..|.+++|.+++ ++.+++|.++|+++++++|+||+|..|...+ .. ... ...+.+..+.+|||
T Consensus 185 -~~~~aavi~eP~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G---~~--~a~--~~~~~~pdi~t~~K 256 (408)
T PRK04612 185 -GGDVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTG---TL--FAH--WQEQVTPDIVTLAK 256 (408)
T ss_pred -CCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCC---ch--hhh--hhcCCCCCEEEEcc
Confidence 34566777889999998877 6789999999999999999999999887654 11 211 12356778999999
Q ss_pred cccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhC
Q psy14428 386 NMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILS 438 (583)
Q Consensus 386 ~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~ 438 (583)
.++ +|+|+||+++ + +++++.+........++.+++.+.++.+.++
T Consensus 257 ~l~-~G~piga~~~--~-----~~~~~~~~~~~~~~t~~~~p~~~aaa~a~L~ 301 (408)
T PRK04612 257 ALG-GGFPIGAMLA--G-----PKVAETMQFGAHGTTFGGNPLAAAVARVALR 301 (408)
T ss_pred hhc-CCCceEEEEE--C-----HHHHhhhcCCCcCCCCCCCHHHHHHHHHHHH
Confidence 999 9999999998 6 4677777654444556788999998888775
|
|
| >PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.3e-12 Score=134.89 Aligned_cols=172 Identities=13% Similarity=0.044 Sum_probs=124.5
Q ss_pred CHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHH------HhCCCCCEEEEcCCCChhhHHHHhhcCCe
Q psy14428 208 DAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLE------RFYPGVKTVYFPTPTWNGHVRFCTDSRLN 281 (583)
Q Consensus 208 ~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~------~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~ 281 (583)
..+|++++|++++. +++++ ++++++|+.++...+. ....+||+|++++|+|..+...+...|++
T Consensus 65 ~~~fe~~lA~~~g~--------~~~v~--~~sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~~v~~~G~~ 134 (438)
T PRK15407 65 NDAFEKKLAEFLGV--------RYALL--VNSGSSANLLAFSALTSPKLGDRALKPGDEVITVAAGFPTTVNPIIQNGLV 134 (438)
T ss_pred HHHHHHHHHHHhCC--------CeEEE--ECCHHHHHHHHHHHHhhccccccCCCCCCEEEECCCCcHHHHHHHHHcCCE
Confidence 48899999999864 35777 8889999988633221 02366999999999999999999999999
Q ss_pred EEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCC-CCCC
Q psy14428 282 VGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLT-SGDF 360 (583)
Q Consensus 282 ~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~-~~~~ 360 (583)
++.+++ +.+++++|++.+++.+ .+++++++++++ +|.. ..+++|.++|++++++||+|+++..-. +++
T Consensus 135 pv~vdv-d~~~~~id~~~le~~i---~~~tkaVi~~~~---~G~p---~dl~~I~~la~~~gi~vIeDaa~a~G~~~~g- 203 (438)
T PRK15407 135 PVFVDV-ELPTYNIDASLLEAAV---SPKTKAIMIAHT---LGNP---FDLAAVKAFCDKHNLWLIEDNCDALGSTYDG- 203 (438)
T ss_pred EEEEec-CCCcCCcCHHHHHHHc---CcCCeEEEEeCC---CCCh---hhHHHHHHHHHHCCCEEEEECccchhhhcCC-
Confidence 999998 6666889999998887 567788777653 4432 367888999999999999999996543 222
Q ss_pred CCchHHHHHHHHhcCcEEEEecC--cccccccCccceEEEEEcCCchhHHHHHHHHHHH
Q psy14428 361 DKDAFSLRYFAKEVGQLCLAQSF--SKNMGLYGERVGTFSVLTPTSDETERIMSQLKIL 417 (583)
Q Consensus 361 ~~~~~~~~~~~~~~~~vi~i~S~--SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~ 417 (583)
. .+.+ .+ .+.+.|| +|.+. .|- -|+++. .+ +++.++++..
T Consensus 204 -~---~~G~----~g-d~~~fSf~~~k~~~-~ge-GG~l~t--~d----~~l~~~~~~~ 245 (438)
T PRK15407 204 -R---MTGT----FG-DIATLSFYPAHHIT-MGE-GGAVFT--ND----PLLKKIIESF 245 (438)
T ss_pred -e---eeec----cC-ceEEEeCCCCCCcc-ccC-ceEEEE--CC----HHHHHHHHHH
Confidence 1 1111 12 2445666 46664 344 589998 65 3565555544
|
|
| >PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.4e-12 Score=137.79 Aligned_cols=155 Identities=18% Similarity=0.129 Sum_probs=118.4
Q ss_pred CHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhH----HHHhhcCCeEE
Q psy14428 208 DAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHV----RFCTDSRLNVG 283 (583)
Q Consensus 208 ~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~----~~~~~~G~~~~ 283 (583)
...|.+.+|++.+.. ..++ +++|++|+.++ +..+..+||+|+++.++|.... ..++..|++++
T Consensus 65 ~~~le~~lA~l~g~~--------~al~--~~SG~~Ai~~a---l~all~pGd~VIv~~~~y~~t~~~~~~~~~~~G~~v~ 131 (427)
T PRK05994 65 NAVLEERVAALEGGT--------AALA--VASGHAAQFLV---FHTLLQPGDEFIAARKLYGGSINQFGHAFKSFGWQVR 131 (427)
T ss_pred HHHHHHHHHHHhCCC--------cEEE--EcCHHHHHHHH---HHHHhCCCCEEEEecCcchhHHHHHHHHHHhcCcEEE
Confidence 477889999888542 3455 78888898875 4445667999999999998644 34667899998
Q ss_pred EEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCc
Q psy14428 284 AYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKD 363 (583)
Q Consensus 284 ~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~ 363 (583)
.++. + |++.+++.+ .++++++++++|+||||.+++ +++|.++|+++++++|+|+++..-....
T Consensus 132 ~vd~-~------d~~~l~~ai---~~~tklV~vesp~NptG~v~d---l~~I~~la~~~gi~livD~a~a~~~~~~---- 194 (427)
T PRK05994 132 WADA-D------DPASFERAI---TPRTKAIFIESIANPGGTVTD---IAAIAEVAHRAGLPLIVDNTLASPYLIR---- 194 (427)
T ss_pred EECC-C------CHHHHHHhc---CcCCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCccccccCC----
Confidence 8765 1 677887777 567899999999999999997 5677888999999999999986322111
Q ss_pred hHHHHHHHHhcCcEEEEecCcccccccCccceEEEE
Q psy14428 364 AFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSV 399 (583)
Q Consensus 364 ~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~ 399 (583)
++ + .+--+++.|++|.+|-+|-.+|.+++
T Consensus 195 --pl----~-~gaDivv~S~tK~lgg~~~~~gG~v~ 223 (427)
T PRK05994 195 --PI----E-HGADIVVHSLTKFLGGHGNSMGGIIV 223 (427)
T ss_pred --cc----c-cCCcEEEEcCccccCCCCCcEEEEEE
Confidence 11 1 23448899999999878888887776
|
|
| >PLN02624 ornithine-delta-aminotransferase | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.1e-12 Score=135.57 Aligned_cols=245 Identities=12% Similarity=0.070 Sum_probs=157.4
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccC-CCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCC
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKN-LDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGIS 239 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~-~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G 239 (583)
.+...+|+..|......|. ..|.+.+++.+.++.. ....+.......+|.+.++++. + .+++++ +++
T Consensus 73 dG~~ylD~~sg~~~~~~Gh--~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~la~~L~~~~----~----~~~~~f--~~S 140 (474)
T PLN02624 73 EGKKYLDFLSAYSAVNQGH--CHPKIIKALTEQAEKLTLSSRAFYNDKFPEFAEYLTSMF----G----YDMVLP--MNT 140 (474)
T ss_pred CCCEEEEcccchhcccCCC--CCHHHHHHHHHHHHhcCCcccccCCHHHHHHHHHHHhhc----C----CCeEEE--eCC
Confidence 4556788888776655554 2467777777666541 1111122333455666666653 2 257888 888
Q ss_pred chhHHHHHHHHHHHhC------CCCC-EEEEcCCCChhhHHHHhhc-CC------------eEEEEecccCCCCCCChhh
Q psy14428 240 GSGSLRVGTAFLERFY------PGVK-TVYFPTPTWNGHVRFCTDS-RL------------NVGAYRYFDNKTNGLDFAG 299 (583)
Q Consensus 240 ~~~al~l~~~~l~~~~------~~gd-~Vlv~~P~y~~~~~~~~~~-G~------------~~~~v~~~d~~~~g~d~~~ 299 (583)
|++|.+.+..+.+... ++++ .|+...-+|.......... +- .+..+|. + |++.
T Consensus 141 GseA~e~AlklAr~~~~~~~g~~~~~~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~------~-d~~~ 213 (474)
T PLN02624 141 GAEGVETAIKLARKWGYEKKGIPKNEAIIVSCCGCFHGRTLAAISMSCDNEATRGFGPLLPGHLKVDF------G-DLDA 213 (474)
T ss_pred hHHHHHHHHHHHHHHHHhhcCCCCCCcEEEEECCCcCCCCHHHhhcCCCccccccCCCCCCCceEeCC------C-CHHH
Confidence 9999998755544321 1133 5666666666542221111 10 1122222 1 6788
Q ss_pred HHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHH-HHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEE
Q psy14428 300 MMEDIKAMPERSILFLQTSSHNPTGVDLSEDQ-WRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLC 378 (583)
Q Consensus 300 l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~-~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi 378 (583)
+++.++....+..++++..++||+|.++++++ +++|.++|++||+++|.||+|.+|...+ ..... ...+....
T Consensus 214 l~~~l~~~~~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~tG~GrtG---~~~a~-~~~~i~pD-- 287 (474)
T PLN02624 214 LEKIFEEDGDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLARTG---KMLAC-DWEEVRPD-- 287 (474)
T ss_pred HHHHHHhCCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcCcCc---chhhH-HhcCCCCC--
Confidence 88888655567889999999999999988775 9999999999999999999999876554 11111 11111222
Q ss_pred EEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhC
Q psy14428 379 LAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILS 438 (583)
Q Consensus 379 ~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~ 438 (583)
+-+|||.+|..++++|++++ + +++++.+........++.+++.+.++...++
T Consensus 288 -iv~lsK~lggG~~pigav~~--~-----~~i~~~~~~~~~~~T~~g~pl~~aaa~aaLe 339 (474)
T PLN02624 288 -VVILGKALGGGVIPVSAVLA--D-----KDVMLCIKPGEHGSTFGGNPLASAVAMAALQ 339 (474)
T ss_pred -EEEecccccCCCCcceeeee--c-----HHHHhHhccCCcCCCCCCCHHHHHHHHHHHH
Confidence 33469999977799999999 6 4677776654444455678888888877764
|
|
| >TIGR01885 Orn_aminotrans ornithine aminotransferase | Back alignment and domain information |
|---|
Probab=99.49 E-value=9.3e-12 Score=132.85 Aligned_cols=245 Identities=10% Similarity=0.083 Sum_probs=153.3
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccC-CCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCC
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKN-LDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGIS 239 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~-~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G 239 (583)
.+...+|+..+.+....|. ..|.+.+++.+.++.. .........-..+|.+.+++++ + .+.+++ +++
T Consensus 35 ~g~~~lD~~s~~~~~~~Gh--~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~----~~~~~~--~~S 102 (401)
T TIGR01885 35 EGKRYLDFLSAYSAVNQGH--CHPKIVKALTEQAQKLTLSSRAFYNDVFGEFAEYVTKLF----G----YDKVLP--MNT 102 (401)
T ss_pred CCCEEEEcccCHhhccCCC--CCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHhhc----C----CCEEEE--eCc
Confidence 3456678877765444432 2467777776665431 1111101222345555555543 2 257888 899
Q ss_pred chhHHHHHHHHHHHh-------CCCCCEEEEcCCCChhh-HHHHhhcC------------CeEEEEecccCCCCCCChhh
Q psy14428 240 GSGSLRVGTAFLERF-------YPGVKTVYFPTPTWNGH-VRFCTDSR------------LNVGAYRYFDNKTNGLDFAG 299 (583)
Q Consensus 240 ~~~al~l~~~~l~~~-------~~~gd~Vlv~~P~y~~~-~~~~~~~G------------~~~~~v~~~d~~~~g~d~~~ 299 (583)
|++|.+.+..+++.. ....+.|+..+-+|... ...+...| ..++.++. + |++.
T Consensus 103 Gs~A~e~ai~~a~~~~~~~~~~~~~~~~i~~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-d~~~ 175 (401)
T TIGR01885 103 GAEAVETAIKLARKWGYKVKGIPENQAIIVSAKGNFHGRTLGAISMSTDPDSRTNFGPYVPGFKKIPY------N-NLEA 175 (401)
T ss_pred cHHHHHHHHHHHHHHhhhhcCCCCCCCEEEEECCCcCcccHHHHhCcCCcccccccCCCCCCceEeCC------C-CHHH
Confidence 999998875554332 12235677777777653 23333222 11233332 1 6788
Q ss_pred HHHHHHcCCCCcEEEEeCCCCCCCCCCCCH-HHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEE
Q psy14428 300 MMEDIKAMPERSILFLQTSSHNPTGVDLSE-DQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLC 378 (583)
Q Consensus 300 l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~-~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi 378 (583)
+++.+++..++..++++...++++|.+.++ +.+++|.++|++|++++|.||+|..+.+.+ ...+. ...+..+.++
T Consensus 176 le~~l~~~~~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~g~~G---~~~~~-~~~~~~~di~ 251 (401)
T TIGR01885 176 LEEALEDHGPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTG---KLLCV-DHENVKPDIV 251 (401)
T ss_pred HHHHHHhcCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccc---hhhHH-hhcCCCCCEE
Confidence 888886545567788888899999998864 469999999999999999999998876554 12122 1112223344
Q ss_pred EEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhC
Q psy14428 379 LAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILS 438 (583)
Q Consensus 379 ~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~ 438 (583)
+|||.++..|+|+|++++ + +++++.+........++.+++.|.++.+.++
T Consensus 252 ---~~gK~l~~g~~~ig~v~~--~-----~~i~~~~~~~~~~~t~~~~p~~~~aa~a~L~ 301 (401)
T TIGR01885 252 ---LLGKALSGGVYPVSAVLA--D-----DDVMLTIKPGEHGSTYGGNPLACAVAVAALE 301 (401)
T ss_pred ---EeeccccCCCCCcEEEEE--c-----HHHHhhccCCCCCCCCCCCHHHHHHHHHHHH
Confidence 468999866699999999 6 5788877653333345667888888777765
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis. |
| >PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.6e-12 Score=137.94 Aligned_cols=243 Identities=15% Similarity=0.045 Sum_probs=162.8
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
.+...+|+..|.+....|. ..+.+.+++.+.+.+. ...|.+..+..+|.+.+++... ..+++++ +++|
T Consensus 48 dG~~~lD~~~g~~~~~lGh--~~p~i~~a~~~~~~~~-~~~~~~~~~~~~la~~L~~~~~-------~~~~v~~--~~sG 115 (426)
T PRK00062 48 DGNEYIDYVGSWGPMILGH--AHPEVVEAVIEAAEKG-LSFGAPTELEVELAELVIELVP-------SIEMVRM--VNSG 115 (426)
T ss_pred CCCEEEEcccchhhhhcCC--CCHHHHHHHHHHHHhC-CcCCCCCHHHHHHHHHHHHhCC-------CCCEEEE--ecCH
Confidence 4567889988877655564 3477878777777653 3345566666777777776641 2468999 9999
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhc-C------------CeEE-----EEecccCCCCCCChhhHHH
Q psy14428 241 SGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDS-R------------LNVG-----AYRYFDNKTNGLDFAGMME 302 (583)
Q Consensus 241 ~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~-G------------~~~~-----~v~~~d~~~~g~d~~~l~~ 302 (583)
++|.+.+..+...... ++.|+..+++|.++...+... | ...+ .+.+ +. -|++.+++
T Consensus 116 seA~e~Aik~a~~~~g-~~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~d~~~l~~ 189 (426)
T PRK00062 116 TEATMSAIRLARGYTG-RDKIIKFEGCYHGHADSLLVKAGSGAATLGLPDSPGVPEDFAKHTLTA--PY---NDLEAVEE 189 (426)
T ss_pred HHHHHHHHHHHHHHhC-CCeEEEEcCccCCchhhhhhccCccccccCCCCCCCCCcccccceEEc--CC---CCHHHHHH
Confidence 9999987665554433 689999999999975332221 1 1000 0111 10 16788888
Q ss_pred HHHcCCCCcEEEEeC-CCCCCCCCCCC-HHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEE
Q psy14428 303 DIKAMPERSILFLQT-SSHNPTGVDLS-EDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLA 380 (583)
Q Consensus 303 ~l~~~~~~~~~i~i~-~p~NPTG~~~s-~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i 380 (583)
.+++...+..++++. -+.| +|.+.+ .+.+++|.++|++|++++|.||+|..+..+. ......+ +..+. +
T Consensus 190 ~i~~~~~~~aaiivEpv~~~-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~G~r~g~----~~~~~~~-~~~pD---i 260 (426)
T PRK00062 190 LFEEYGDEIAAVIVEPVAGN-MGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGFRVAL----GGAQGYY-GVTPD---L 260 (426)
T ss_pred HHHhCCCcEEEEEEeCCcCC-CCCcCCCHHHHHHHHHHHHHcCCEEEEeechhccccCC----ccHHHHh-CCCcc---h
Confidence 776544455555554 6666 787775 8889999999999999999999999885542 1111111 11112 4
Q ss_pred ecCcccccccCccceEEEEEcCCchhHHHHHHHHHHH---HhccccCCChHHHHHHHHHhC
Q psy14428 381 QSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKIL---IRGFYSNPPIHGARIVTEILS 438 (583)
Q Consensus 381 ~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~---~~~~~~~~s~~~q~~~~~~l~ 438 (583)
.+|||.++ .|+++|++++ + +++++.+... .....++.+++.+.++...++
T Consensus 261 ~~~gK~l~-~G~p~ga~~~--~-----~~i~~~~~~~~~~~~~~T~~~~p~~~aaa~a~L~ 313 (426)
T PRK00062 261 TTLGKIIG-GGLPVGAFGG--R-----REIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLK 313 (426)
T ss_pred HhhhhHhh-CCCcceeeeE--H-----HHHHHhhccCCCceecccCcCCHHHHHHHHHHHH
Confidence 68999999 9999999988 6 5788888532 222345678888888777664
|
|
| >TIGR03246 arg_catab_astC succinylornithine transaminase family | Back alignment and domain information |
|---|
Probab=99.47 E-value=7e-12 Score=133.49 Aligned_cols=241 Identities=13% Similarity=0.142 Sum_probs=150.7
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
.+...+|+..|.+....|.- .|.+.+++.+.+++. ..... ....+....+++.+.+..+ .+++++ +++|
T Consensus 33 dG~~ylD~~~g~~~~~lGh~--~p~v~~a~~~~~~~~--~~~~~-~~~~~~~~~la~~L~~~~~----~~~~~f--~~SG 101 (397)
T TIGR03246 33 QGKEYIDFAGGIAVNALGHA--HPELVKALIEQADKL--WHIGN-GYTNEPVLRLAKKLVDATF----ADKVFF--CNSG 101 (397)
T ss_pred CCCEEEECCcCHhhccCCCC--CHHHHHHHHHHHHhc--ccccC-ccCCHHHHHHHHHHHhhCC----CCEEEE--eCCc
Confidence 35567888887766666653 477777777666541 11111 1112333444444443221 368899 9999
Q ss_pred hhHHHHHHHHHHHhC-----CCCCEEEEcCCCChhhHH-HHhhcCC------------eEEEEecccCCCCCCChhhHHH
Q psy14428 241 SGSLRVGTAFLERFY-----PGVKTVYFPTPTWNGHVR-FCTDSRL------------NVGAYRYFDNKTNGLDFAGMME 302 (583)
Q Consensus 241 ~~al~l~~~~l~~~~-----~~gd~Vlv~~P~y~~~~~-~~~~~G~------------~~~~v~~~d~~~~g~d~~~l~~ 302 (583)
++|.+.+..+.+... ...+.|+..+-+|..... .+...+. .+..+|. .|++.+++
T Consensus 102 seA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~ 174 (397)
T TIGR03246 102 AEANEAALKLARRYALDKHGADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQGFAPLPGGIKHAPY-------NDLAAAKA 174 (397)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCceEEeCC-------CCHHHHHH
Confidence 999998766554442 224567777777766532 2222221 1222222 16788887
Q ss_pred HHHcCCCCcEEEEeCCCCCCCCCCC--CHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEE
Q psy14428 303 DIKAMPERSILFLQTSSHNPTGVDL--SEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLA 380 (583)
Q Consensus 303 ~l~~~~~~~~~i~i~~p~NPTG~~~--s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i 380 (583)
.+ .+++.++++. |.|++|.+. +.+.+++|.++|++||+++|.||+|..+...+ .......+ +-..-+
T Consensus 175 ~l---~~~~aavi~E-pi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~G---~~~a~~~~----gv~pDi 243 (397)
T TIGR03246 175 LI---SDKTCAVIVE-PIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTG---ELYAYMHY----GVTPDI 243 (397)
T ss_pred Hh---ccCeEEEEEe-cccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCccc---cchhhhhc----CCCCCE
Confidence 77 3456677666 555555443 89999999999999999999999998885544 11121111 111223
Q ss_pred ecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhC
Q psy14428 381 QSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILS 438 (583)
Q Consensus 381 ~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~ 438 (583)
-+|||.++ .|+|+||+++ + +++++.+........++.+++++.++...++
T Consensus 244 ~t~~K~lg-gG~pigav~~--~-----~~i~~~~~~~~~~~t~~~~p~~~aaa~a~l~ 293 (397)
T TIGR03246 244 LTSAKALG-GGFPIGAMLT--T-----TEIAAHLKVGTHGTTYGGNPLACAVAGKVLD 293 (397)
T ss_pred EEeehhhh-CCcceeEEEE--c-----HHHHHhccCCCcCCCCCCCHHHHHHHHHHHH
Confidence 48999998 8999999999 6 5788887654333455677788887777664
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason. |
| >PLN02651 cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.47 E-value=6e-12 Score=132.58 Aligned_cols=190 Identities=14% Similarity=0.073 Sum_probs=130.4
Q ss_pred CChHHHHHHHHHhccCCCCC----C--CC--CCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHH-H
Q psy14428 182 VLPSVKEAERRIYEKNLDHE----Y--AN--IGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFL-E 252 (583)
Q Consensus 182 ~~~~v~~a~~~~~~~~~~~~----Y--~~--~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l-~ 252 (583)
+++.+.+++.+......... + .. ..=..++|+.++++++ .++++|++ |+|+++++.++...+ .
T Consensus 11 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g------~~~~~v~~--t~~~t~a~~~~l~~~~~ 82 (364)
T PLN02651 11 IDPRVLDAMLPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALIG------ADPKEIIF--TSGATESNNLAIKGVMH 82 (364)
T ss_pred CCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHHHHHHHHHHHHHhC------CCCCeEEE--eCCHHHHHHHHHHHHHH
Confidence 56778888766653210000 0 00 0114566777777764 35689999 999999988764333 2
Q ss_pred HhCCCCCEEEEcCCCChhhH---HHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCH
Q psy14428 253 RFYPGVKTVYFPTPTWNGHV---RFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSE 329 (583)
Q Consensus 253 ~~~~~gd~Vlv~~P~y~~~~---~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~ 329 (583)
.+.++||+|++.+-.|+.+. ..++..|++++.+++ ++ ++.+|++.+++.+ .++++++++++++||||.+.+
T Consensus 83 ~~~~~g~~vl~~~~~h~s~~~~~~~~~~~g~~v~~v~~-~~-~~~~d~~~l~~~i---~~~t~lv~v~~~~n~tG~~~~- 156 (364)
T PLN02651 83 FYKDKKKHVITTQTEHKCVLDSCRHLQQEGFEVTYLPV-KS-DGLVDLDELAAAI---RPDTALVSVMAVNNEIGVIQP- 156 (364)
T ss_pred hccCCCCEEEEcccccHHHHHHHHHHHhcCCEEEEEcc-CC-CCcCCHHHHHHhc---CCCcEEEEEECCCCCceeccc-
Confidence 23466999999886665543 334457999999988 43 3568999999888 567899999999999999987
Q ss_pred HHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEE
Q psy14428 330 DQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSV 399 (583)
Q Consensus 330 ~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~ 399 (583)
+++|.++|+++|+++++|.++.--... ..+ +..+--+++.|..|.+| | .-+|++++
T Consensus 157 --l~~I~~~~~~~g~~~~vD~a~~~g~~~------~~~----~~~~~D~~~~s~hK~~g-p-~G~g~l~v 212 (364)
T PLN02651 157 --VEEIGELCREKKVLFHTDAAQAVGKIP------VDV----DDLGVDLMSISGHKIYG-P-KGVGALYV 212 (364)
T ss_pred --HHHHHHHHHHcCCEEEEEcchhhCCcc------cCc----ccCCCCEEEechhhhCC-C-CceEEEEE
Confidence 557788899999999999998632211 011 22234577888889543 2 44799998
|
|
| >cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn) | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.9e-12 Score=130.09 Aligned_cols=176 Identities=16% Similarity=0.050 Sum_probs=128.8
Q ss_pred CCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHh-CCCCCEEEEcCCCChhhHHHHhhcCC
Q psy14428 202 YANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERF-YPGVKTVYFPTPTWNGHVRFCTDSRL 280 (583)
Q Consensus 202 Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~-~~~gd~Vlv~~P~y~~~~~~~~~~G~ 280 (583)
|.......+|+++++++++. +++++ ++++++|+.++ +..+ ..+||+|+++.|+|..+...+...|+
T Consensus 14 ~~~~~~~~~~~~~la~~~~~--------~~~~~--~~sgt~al~~~---l~~l~~~~gd~vl~~~~~~~~~~~~~~~~g~ 80 (352)
T cd00616 14 LTLGPKVREFEKAFAEYLGV--------KYAVA--VSSGTAALHLA---LRALGIGPGDEVIVPSFTFVATANAILLLGA 80 (352)
T ss_pred ccCCHHHHHHHHHHHHHhCC--------CeEEE--ECCHHHHHHHH---HHHcCCCCCCEEEeCCcchHHHHHHHHHcCC
Confidence 33345678999999999862 45777 78889999885 3344 46799999999999999999999999
Q ss_pred eEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCC
Q psy14428 281 NVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDF 360 (583)
Q Consensus 281 ~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~ 360 (583)
+++.+++ +++++.+|++.+++.+ .+++++++++ ||+|...+ +++|.++|++++++||+|+++.......
T Consensus 81 ~~~~~~~-~~~~~~~d~~~l~~~i---~~~~~~v~~~---~~~G~~~~---~~~i~~l~~~~~i~li~D~a~~~g~~~~- 149 (352)
T cd00616 81 TPVFVDI-DPDTYNIDPELIEAAI---TPRTKAIIPV---HLYGNPAD---MDAIMAIAKRHGLPVIEDAAQALGATYK- 149 (352)
T ss_pred eEEEEec-CCCcCCcCHHHHHHhc---CcCCeEEEEE---CCCCCcCC---HHHHHHHHHHcCCeEEEECCCCCCCeEC-
Confidence 9999998 5545788999998877 4567877765 57998776 5666788999999999999987432211
Q ss_pred CCchHHHHHHHHhcCcEEEEecCc--ccccccCccceEEEEEcCCchhHHHHHHHHHHH
Q psy14428 361 DKDAFSLRYFAKEVGQLCLAQSFS--KNMGLYGERVGTFSVLTPTSDETERIMSQLKIL 417 (583)
Q Consensus 361 ~~~~~~~~~~~~~~~~vi~i~S~S--K~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~ 417 (583)
.. .+ +.. ..+.+.||+ |.+ ++-+.|+++. ++ ++++++++..
T Consensus 150 --~~-~~----~~~-~d~~~~S~~~~K~~--~~~~gg~~~~--~~----~~~~~~~~~~ 192 (352)
T cd00616 150 --GR-KV----GTF-GDAGAFSFHPTKNL--TTGEGGAVVT--ND----EELAERARLL 192 (352)
T ss_pred --CE-Ec----ccC-cceeEEcCCCCCCC--cccCceEEEE--CC----HHHHHHHHHH
Confidence 00 11 111 135667766 877 4556788888 64 3677776654
|
AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein |
| >PRK07495 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=9.8e-12 Score=133.06 Aligned_cols=295 Identities=11% Similarity=0.045 Sum_probs=176.8
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
.+...+|+..|.+....|.- .|.+.+++.+.++.. . .+.......+.+..+++.+....... ..+++.. +++|
T Consensus 38 dG~~ylD~~~g~~~~~lGh~--~p~v~~ai~~ql~~l-~-~~~~~~~~~~~~~~la~~l~~~~p~~-~~~~v~f--~~SG 110 (425)
T PRK07495 38 EGRRYIDFAAGIAVVNTGHR--HPRVIAAVKAQLDRF-T-HTCHQVVPYENYVRLAERLNALVPGD-FAKKTIF--VTTG 110 (425)
T ss_pred CCCEEEEccccHHhhccCCC--CHHHHHHHHHHHhhc-c-CcccCccCCHHHHHHHHHHHHhCCCC-CCCEEEE--CCch
Confidence 45567888888776656643 467777777766541 1 11111111233444555554322100 1258999 9999
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhh-cC-------------CeEEEEecccCCCCCCC----hhhHHH
Q psy14428 241 SGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTD-SR-------------LNVGAYRYFDNKTNGLD----FAGMME 302 (583)
Q Consensus 241 ~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~-~G-------------~~~~~v~~~d~~~~g~d----~~~l~~ 302 (583)
++|.+.+..+.+.... ..+|+...-+|.+....... .| ..++.+|+.+ ...+.+ ++.+++
T Consensus 111 seA~e~AlklAr~~tg-r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~l~~ 188 (425)
T PRK07495 111 AEAVENAVKIARAATG-RSAVIAFGGGFHGRTFMGMSLTGKVVPYKVGFGAMMPDVYHVPFPV-ELHGVSVEQSLAALDK 188 (425)
T ss_pred HHHHHHHHHHHHHhhC-CCeEEEECCCcCCccHHHhhhcCCCcccccCCCCCCCCeEEecCCc-ccccccHHHHHHHHHH
Confidence 9999987666555533 46788888777665322111 01 1233444421 112333 333455
Q ss_pred HHHc--C-CCCcEEEEeCCCCCCCC-CCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEE
Q psy14428 303 DIKA--M-PERSILFLQTSSHNPTG-VDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLC 378 (583)
Q Consensus 303 ~l~~--~-~~~~~~i~i~~p~NPTG-~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi 378 (583)
.+++ . .+...+|+-|..+| +| ..++++.+++|.++|++||+++|+||+|.+|...+ ..... +..+.+.
T Consensus 189 ~~~~~~~~~~iaavi~EPv~g~-~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G---~~~a~----~~~gv~p 260 (425)
T PRK07495 189 LFKADVDPQRVAAIIIEPVQGE-GGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTG---KLFAM----EHHEVAA 260 (425)
T ss_pred HHHhccCCCceEEEEECCccCC-CCCccCCHHHHHHHHHHHHHcCCEEEEechhhcCCcCC---Cceee----cccCCCC
Confidence 5542 1 22345555677788 78 56899999999999999999999999999886554 11111 2234566
Q ss_pred EEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHH---HHHHHhCChhhhhhhhhHHHHHHH
Q psy14428 379 LAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGAR---IVTEILSDPKLKAQCDETERIMSQ 455 (583)
Q Consensus 379 ~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~---~~~~~l~~~~~~~~~~~~~~~~~~ 455 (583)
.+.+|||.++ .|+|+|++++ + +++++.+........++.+++++. ++.++++++.+.++.+.....+.+
T Consensus 261 Di~tlsK~l~-~G~pigav~~--~-----~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~ 332 (425)
T PRK07495 261 DLTTMAKGLA-GGFPLAAVTG--R-----AEIMDAPGPGGLGGTYGGNPLGIAAAHAVLDVIEEEDLCERANQLGNRLKQ 332 (425)
T ss_pred CEEeehhhhc-CCccceEEEE--c-----HHHHhccCCCCcCCCCCCCHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence 7899999998 9999999999 7 578877765444456678888888 444555566666666555544333
Q ss_pred -HHHHHhhc--cCCCccchhhHHHHhcC
Q psy14428 456 -LKILIRGF--YSNPPIHGARIVTEILS 480 (583)
Q Consensus 456 -l~~~~r~~--~~~~p~~g~~i~~~~l~ 480 (583)
++.+.... +...-..|.++|..+..
T Consensus 333 ~L~~l~~~~~~i~~vrG~Gl~~~iel~~ 360 (425)
T PRK07495 333 RLASLRETVPEIADIRGPGFMNAVEFND 360 (425)
T ss_pred HHHHHHhhCCCeeeeecCceEEEEEEec
Confidence 33332211 11122346777776643
|
|
| >PRK06777 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.9e-11 Score=128.55 Aligned_cols=254 Identities=12% Similarity=0.093 Sum_probs=158.5
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
.+...+|+..|.+....|.- .|.+.+++.+.+++.....+. ....+.+..+|+.+...... -..+++.+ +++|
T Consensus 38 dG~~ylD~~~g~~~~~lGh~--~p~v~~ai~~ql~~~~~~~~~--~~~~~~~~~la~~l~~~~p~-~~~~~~~f--~~sG 110 (421)
T PRK06777 38 EGREYIDFAAGIAVLNTGHR--HPKVVAAVRQQLDQFTHTAYQ--IVPYASYVTLAERINALAPI-DGPAKTAF--FTTG 110 (421)
T ss_pred CCCEEEEcccCHHhhccCCC--CHHHHHHHHHHHhhccccccc--ccCChHHHHHHHHHHHhCCC-CCCceEEE--eCCc
Confidence 34566888777765555543 366777777766542111111 11122334444554432110 11358888 8899
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhh-cCC-------------eEEEEecccCCCCCC----ChhhHHH
Q psy14428 241 SGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTD-SRL-------------NVGAYRYFDNKTNGL----DFAGMME 302 (583)
Q Consensus 241 ~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~-~G~-------------~~~~v~~~d~~~~g~----d~~~l~~ 302 (583)
++|.+.+..+.+.... ..+|+..+-+|.+....... .|. .+..++..+. ..+. +++.+++
T Consensus 111 seA~e~AlklAr~~tg-r~~ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~l~~ 188 (421)
T PRK06777 111 AEAVENAVKIARAYTG-RPGVIAFGGAFHGRTLLTMALTGKVAPYKVGFGPFPGSIFHALYPNE-LHGVSVEEALSSVER 188 (421)
T ss_pred HHHHHHHHHHHHHhhC-CCeEEEEcCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCcc-ccCcCHHHHHHHHHH
Confidence 9999988666655543 46788888887766433322 121 1122222111 1111 2455666
Q ss_pred HHHc--CCCCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEE
Q psy14428 303 DIKA--MPERSILFLQTSSHNPTGV-DLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCL 379 (583)
Q Consensus 303 ~l~~--~~~~~~~i~i~~p~NPTG~-~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~ 379 (583)
.+++ ..++..++++-.-++..|. +.+++.+++|.++|+++|+++|.||+|.+|.+.+ ...+...+ +..+.++
T Consensus 189 ~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~g---~~~~~~~~-~~~pDiv- 263 (421)
T PRK06777 189 LFKADIAPDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTG---KLFAMEYY-DVKPDLI- 263 (421)
T ss_pred HHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCccCC---chhhhhhc-CCCCCEE-
Confidence 6643 2344556666556777885 6899999999999999999999999999987654 22233322 2222333
Q ss_pred EecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhC
Q psy14428 380 AQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILS 438 (583)
Q Consensus 380 i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~ 438 (583)
+|||.++ +|+|+||+++ + +++++.+........++.++++|.++.+.|+
T Consensus 264 --~~sK~l~-~G~pigav~~--~-----~~i~~~~~~~~~~~T~~~~p~~~aaa~a~L~ 312 (421)
T PRK06777 264 --TMAKSLG-GGMPISAVVG--R-----AEVMDAPAPGGLGGTYAGNPLAVAAALAVLD 312 (421)
T ss_pred --eeehhhc-CCCceEEEEE--c-----HHHHhccCCCCCCCCCCcCHHHHHHHHHHHH
Confidence 7999999 9999999999 6 5788887765555567789999999988885
|
|
| >PLN02955 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.3e-10 Score=121.77 Aligned_cols=223 Identities=14% Similarity=0.086 Sum_probs=139.6
Q ss_pred CCccccCCccccCCCCCCCCChHHHHHHHHHhcc-CCCC-CCCCCCCC----HHHHHHHHHHHhCCCCCCCCCCCeEEEe
Q psy14428 163 PKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEK-NLDH-EYANIGGD----AKFCKLAAQLAYGEDFPAFKDNRLAIVQ 236 (583)
Q Consensus 163 ~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~-~~~~-~Y~~~~G~----~~Lr~aia~~~~~~~g~~~~~~~I~i~~ 236 (583)
.+.++|+..++- |.. ..+.++++..+..++ +... +=.-..|. .+|.+++|++++.. +-+++
T Consensus 102 r~~l~FsSndYL---GL~-~~p~v~~a~~~ai~~yG~g~~gSrl~~G~~~~h~~LE~~LA~f~g~e-------~all~-- 168 (476)
T PLN02955 102 KKLLLFSGNDYL---GLS-SHPTISNAAANAAKEYGMGPKGSALICGYTTYHRLLESSLADLKKKE-------DCLVC-- 168 (476)
T ss_pred ceEEEeeccCcc---CCC-CCHHHHHHHHHHHHHcCCCCCCcCccccChHHHHHHHHHHHHHHCCC-------cEEEE--
Confidence 356888877663 222 345677776666654 1110 00012344 78999999999642 33444
Q ss_pred cCCchhHHHHHHHHHHH-----------hCCCCCEEEEcCCCChhhHHHHhhc----CCeEEEEecccCCCCCCChhhHH
Q psy14428 237 GISGSGSLRVGTAFLER-----------FYPGVKTVYFPTPTWNGHVRFCTDS----RLNVGAYRYFDNKTNGLDFAGMM 301 (583)
Q Consensus 237 t~G~~~al~l~~~~l~~-----------~~~~gd~Vlv~~P~y~~~~~~~~~~----G~~~~~v~~~d~~~~g~d~~~l~ 301 (583)
.+|-...+.++. .+.. ...++|.|+...-.......-++.. +++++.++- . |++.++
T Consensus 169 sSGy~AN~~~i~-aL~~~~~~~~~~~~~~~~~~d~i~~D~~~HaSI~dG~~ls~~~~~a~~~~f~H---N----D~~~Le 240 (476)
T PLN02955 169 PTGFAANMAAMV-AIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGVRLAERQGNVEVFVYRH---C----DMYHLN 240 (476)
T ss_pred CChHHHHHHHHH-HHhhccccccccccccCCCCcEEEEeccchHHHHHHHHhccccCCceEEEeCC---C----CHHHHH
Confidence 555444343322 2210 0233556666555566666666655 466666543 1 889999
Q ss_pred HHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEe
Q psy14428 302 EDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQ 381 (583)
Q Consensus 302 ~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~ 381 (583)
+.+++...+.++|++-.--++.|.+.+ +.+|.++|++|++++|+||++..+.++.. ..-....+.-..+..|+++
T Consensus 241 ~~L~~~~~~~~~Vv~EgV~SmdGdiap---L~eL~~L~~~~ga~LiVDEAH~~Gv~G~~--G~G~~e~~g~~~di~ii~~ 315 (476)
T PLN02955 241 SLLSSCKMKRKVVVTDSLFSMDGDFAP---MEELSQLRKKYGFLLVIDDAHGTFVCGEN--GGGVAEEFNCEADVDLCVG 315 (476)
T ss_pred HHHHhCCCCceEEEEeCCCCCCCCcCC---HHHHHHHHHHcCcEEEEcccccCceecCC--CCcHHHHhCCCCCCcEEEE
Confidence 988776555566666666788898888 66667778899999999999998887641 1112222211246789999
Q ss_pred cCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhcc
Q psy14428 382 SFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGF 421 (583)
Q Consensus 382 S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~ 421 (583)
||||.+|..| |++++ + +++++.++...+..
T Consensus 316 TLsKA~G~~G---Gfi~g--s-----~~~~~~l~~~~~~~ 345 (476)
T PLN02955 316 TLSKAAGCHG---GFIAC--S-----KKWKQLIQSRGRSF 345 (476)
T ss_pred eCccchhccC---ceeec--H-----HHHHHHHHHhCCCC
Confidence 9999876555 99998 6 57888888765554
|
|
| >PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.8e-11 Score=127.72 Aligned_cols=155 Identities=16% Similarity=0.136 Sum_probs=120.1
Q ss_pred CHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHH----hhcCCeEE
Q psy14428 208 DAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFC----TDSRLNVG 283 (583)
Q Consensus 208 ~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~----~~~G~~~~ 283 (583)
..+|++.+|++.+.. ..++ |++++.|+.++. ..+..+||+|+++...|......+ +..|++++
T Consensus 66 ~~~le~~lA~l~g~~--------~av~--~sSGt~Al~~al---~~ll~~Gd~Vi~~~~~y~~t~~~~~~~l~~~Gi~v~ 132 (433)
T PRK08134 66 VAVLEERVAALEGGV--------GAIA--TASGQAALHLAI---ATLMGAGSHIVASSALYGGSHNLLHYTLRRFGIETT 132 (433)
T ss_pred HHHHHHHHHHHhCCC--------cEEE--eCCHHHHHHHHH---HHHhCCCCEEEEeCCccHHHHHHHHHHHhhCCeEEE
Confidence 688999999998642 3466 899999999863 233556999999999998765544 45799998
Q ss_pred EEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCc
Q psy14428 284 AYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKD 363 (583)
Q Consensus 284 ~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~ 363 (583)
.++. + |++.+++.+ .++++++++.+|+||||.+.+ +++|.++|+++++++|+|.++.--....
T Consensus 133 ~vd~-~------d~~~l~~~i---~~~TklV~~e~~~np~g~v~D---i~~I~~la~~~gi~livD~t~a~~~~~~---- 195 (433)
T PRK08134 133 FVKP-G------DIDGWRAAI---RPNTRLLFGETLGNPGLEVLD---IPTVAAIAHEAGVPLLVDSTFTTPYLLR---- 195 (433)
T ss_pred EECC-C------CHHHHHHhc---CCCCeEEEEECCCcccCcccC---HHHHHHHHHHcCCEEEEECCCcccccCC----
Confidence 8876 2 678888877 678899999999999999998 5666888899999999999975322211
Q ss_pred hHHHHHHHHhcCcEEEEecCcccccccCccceEEEE
Q psy14428 364 AFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSV 399 (583)
Q Consensus 364 ~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~ 399 (583)
++ ..+--+++.|.+|.++-+|..+|.+++
T Consensus 196 --pl-----~~GaD~vv~S~tK~l~g~g~~~gG~v~ 224 (433)
T PRK08134 196 --PF-----EHGADLVYHSATKFLGGHGTAIGGVLV 224 (433)
T ss_pred --ch-----hcCCCEEEeccccccCCCCCceEEEEE
Confidence 11 124468899999999888888888776
|
|
| >PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.4e-11 Score=125.75 Aligned_cols=213 Identities=14% Similarity=0.102 Sum_probs=140.9
Q ss_pred CHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHH----HhhcCCeEE
Q psy14428 208 DAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRF----CTDSRLNVG 283 (583)
Q Consensus 208 ~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~----~~~~G~~~~ 283 (583)
...|++.+|++.+.. ..++ +++|+.|+..+ +..++.+||.|++....|...... +...|++++
T Consensus 71 ~~~Le~~lA~l~g~~--------~av~--~sSG~aAi~~a---l~all~~Gd~Vv~~~~~y~~t~~~~~~~l~~~Gi~v~ 137 (436)
T PRK07812 71 QDVVEQRIAALEGGV--------AALL--LASGQAAETFA---ILNLAGAGDHIVSSPRLYGGTYNLFHYTLPKLGIEVS 137 (436)
T ss_pred HHHHHHHHHHHhCCC--------eEEE--EccHHHHHHHH---HHHHhCCCCEEEEeCCcchHHHHHHHHHhhcCeEEEE
Confidence 468888998887642 3455 67778888875 344566799999999888776543 344677777
Q ss_pred EEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCc
Q psy14428 284 AYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKD 363 (583)
Q Consensus 284 ~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~ 363 (583)
.++ +. .|++.+++.+ .++++++++.+|+||+|.+.+. ++|.++|+++|+++|+|+++..-....
T Consensus 138 ~vd--d~----~d~e~l~~ai---~~~tklV~ie~~sNp~G~v~Dl---~~I~~la~~~gi~liVD~t~a~~~~~~---- 201 (436)
T PRK07812 138 FVE--DP----DDLDAWRAAV---RPNTKAFFAETISNPQIDVLDI---PGVAEVAHEAGVPLIVDNTIATPYLIR---- 201 (436)
T ss_pred EEC--CC----CCHHHHHHhC---CCCCeEEEEECCCCCCCeecCH---HHHHHHHHHcCCEEEEECCCcccccCC----
Confidence 663 12 1778887766 5778999999999999999985 556778889999999999875321111
Q ss_pred hHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCch-h-------------------------HHHHH-HHHHH
Q psy14428 364 AFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSD-E-------------------------TERIM-SQLKI 416 (583)
Q Consensus 364 ~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~-~-------------------------~~~li-~~l~~ 416 (583)
++ + .+--+++.|++|.+|-.|--+|.+++ .+.. . .+.++ +....
T Consensus 202 --pl----~-~GaDivv~S~tK~lgg~G~~i~G~vv--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (436)
T PRK07812 202 --PL----E-HGADIVVHSATKYLGGHGTAIAGVIV--DGGTFDWTQGRFPGFTTPDPSYHGVVFAELGPPAYALKARVQ 272 (436)
T ss_pred --ch----h-cCCCEEEEecccccCCCCCeEEEEEE--cCCccccccccccccccCCcccccchhhhcchhHHHHHHHHH
Confidence 11 1 23346679999999888877888887 3210 0 00111 11112
Q ss_pred HHhccccCCChHHHHHHHHHhCC--hhhhhhhhhHHHHHHHHHH
Q psy14428 417 LIRGFYSNPPIHGARIVTEILSD--PKLKAQCDETERIMSQLKI 458 (583)
Q Consensus 417 ~~~~~~~~~s~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~l~~ 458 (583)
..+......++...+.+..-+++ -.++++.++..++.+.++.
T Consensus 273 ~~~~~G~~l~p~~a~l~~rgl~tL~~R~~~~~~nA~~la~~L~~ 316 (436)
T PRK07812 273 LLRDLGSAISPFNAFLIAQGLETLSLRIERHVANAQRVAEFLEA 316 (436)
T ss_pred HHHhcCCCCCHHHHHHHhcCcCcHHHHHHHHHHHHHHHHHHHHh
Confidence 33445667777777777666664 3456666565555555543
|
|
| >COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.7e-10 Score=119.07 Aligned_cols=192 Identities=16% Similarity=0.041 Sum_probs=138.7
Q ss_pred hHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEE
Q psy14428 184 PSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYF 263 (583)
Q Consensus 184 ~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv 263 (583)
+...+++.+.+..+ .+....-..+|.+++++|++.++ .+. ++.++.|++++...+. ..|||+|++
T Consensus 15 ~~e~~~v~~vl~sg---~i~~G~~v~~FE~~~ae~~G~k~--------ava--~~sgT~AL~laL~al~--ig~GDeVI~ 79 (374)
T COG0399 15 EEELAAVQEVLKSG---WLTGGPFVRRFEQAFAEYLGVKY--------AVA--VSSGTAALHLALLALA--IGPGDEVIV 79 (374)
T ss_pred hHHHHHHHHHHHcC---CeecChHHHHHHHHHHHHhCCCe--------EEE--ecChHHHHHHHHHhcC--CCCCCEEEe
Confidence 45566666666543 12233335899999999998654 444 8889999999633222 466999999
Q ss_pred cCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcC
Q psy14428 264 PTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRH 343 (583)
Q Consensus 264 ~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~ 343 (583)
++-+|....+.+...|++++.+++ |++++.+|++.++++| ++++++|+..+- -|..- ++++|.++|++||
T Consensus 80 ps~TfvATan~i~~~Ga~PVFvDi-d~~T~nid~~~ie~aI---t~~tKAIipVhl---~G~~~---dm~~i~~la~~~~ 149 (374)
T COG0399 80 PSFTFVATANAVLLVGAKPVFVDI-DPDTLNIDPDLIEAAI---TPRTKAIIPVHL---AGQPC---DMDAIMALAKRHG 149 (374)
T ss_pred cCCchHHHHHHHHHcCCeEEEEec-CCcccCCCHHHHHHHc---ccCCeEEEEehh---ccCCC---CHHHHHHHHHHcC
Confidence 999999999999999999999999 8888999999999999 677888874322 23333 5777888899999
Q ss_pred eEEEEeccCCCCC-CCCCCCchHHHHHHHHhcCcEEEEecC--cccccccCccceEEEEEcCCchhHHHHHHHHHHHH
Q psy14428 344 LYPFFDMAYLGLT-SGDFDKDAFSLRYFAKEVGQLCLAQSF--SKNMGLYGERVGTFSVLTPTSDETERIMSQLKILI 418 (583)
Q Consensus 344 i~iI~De~Y~~l~-~~~~~~~~~~~~~~~~~~~~vi~i~S~--SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~ 418 (583)
++||||.+.+.-. |.+. .+-++ -.+.+.|| +|.+. +| --|.++. .| +++.++++...
T Consensus 150 l~vIEDaAqa~Ga~y~gk-----~vGt~-----Gd~~~fSF~~~K~it-tg-EGGav~t--nd----~ela~k~~~lr 209 (374)
T COG0399 150 LPVIEDAAQAHGATYKGK-----KVGSF-----GDIGAFSFHATKNLT-TG-EGGAVVT--ND----EELAEKARSLR 209 (374)
T ss_pred CeEEEEcchhccCeecCc-----ccccc-----cceEEEEecCCCCcc-cc-CceEEEe--CC----HHHHHHHHHHH
Confidence 9999999975432 3321 11111 23555665 78887 66 6788888 55 47777777653
|
|
| >PRK08117 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.2e-10 Score=120.53 Aligned_cols=252 Identities=12% Similarity=0.060 Sum_probs=149.4
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCC--CCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecC
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDH--EYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGI 238 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~--~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~ 238 (583)
.+...+|+..|.+....|. -.+.+.+++.+.++..... .........+|-+.+++... -..+.+++ ++
T Consensus 41 dG~~ylD~~~g~~~~~lGh--~~p~v~~a~~~q~~~~~~~~~~~~~~~~~~~la~~L~~~~~------~~~~~v~f--~~ 110 (433)
T PRK08117 41 DGKEYLDFTSGIAVANVGH--RHPKVVQAIKEQADKLMHGPSGVIYYESILKLAEELAEITP------GGLDCFFF--SN 110 (433)
T ss_pred CCCEEEECCcchhhccCCC--CCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCC------CCCCEEEE--eC
Confidence 3456788888876555664 3467777777766541111 11112223344444444331 11357888 89
Q ss_pred CchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHh-hcC-------------CeEEEEecccCCC--CC--------
Q psy14428 239 SGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCT-DSR-------------LNVGAYRYFDNKT--NG-------- 294 (583)
Q Consensus 239 G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~-~~G-------------~~~~~v~~~d~~~--~g-------- 294 (583)
+|++|.+.+..+.+.... ...|+..+-+|........ ..+ ..+..+|..+... .+
T Consensus 111 SGseA~e~AlklAr~~tg-r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (433)
T PRK08117 111 SGAEAIEGALKLAKHVTK-RPYIISFTGCFHGRTLGALSVTTSKSKYRKYYQPLLGSVYQAPYPYCDRCPKGEDPEVCFL 189 (433)
T ss_pred cHHHHHHHHHHHHHHhcC-CCeEEEECCCcCCcCHHHHhhcCCCccccccCCCCCCCcEEeCCCccccccccCchhHHHH
Confidence 999999987665444433 4678887777766432211 111 0122333311100 01
Q ss_pred CChhhHHHHHHcC--CCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHH
Q psy14428 295 LDFAGMMEDIKAM--PERSILFLQTSSHNPTGVD-LSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFA 371 (583)
Q Consensus 295 ~d~~~l~~~l~~~--~~~~~~i~i~~p~NPTG~~-~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~ 371 (583)
-+++.+++.+++. ..+..++++-.-+.-.|.+ .+++.+++|.++|++||+++|.||+|.+|...+. ......
T Consensus 190 ~~~~~l~~~~~~~~~~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~gr~G~---~~~~~~-- 264 (433)
T PRK08117 190 ECLRDLESLFKHQVTPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTGE---WFAAQT-- 264 (433)
T ss_pred HHHHHHHHHHHhccCCCcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhccCcccc---chhHhh--
Confidence 0345566655431 2334444443333334554 5899999999999999999999999999866541 111111
Q ss_pred HhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhC
Q psy14428 372 KEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILS 438 (583)
Q Consensus 372 ~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~ 438 (583)
.+...-+.+|||.++ +|+++|++++ + +++++.+........++.+++++.++...++
T Consensus 265 --~gv~pDi~t~sK~lg-~G~pigav~~--~-----~~i~~~~~~~~~~~T~~~np~~~aaa~a~L~ 321 (433)
T PRK08117 265 --FGVVPDIMTIAKGIA-SGLPLSAVVA--S-----KELMEQWPLGSHGTTFGGNPVACAAALATLE 321 (433)
T ss_pred --cCCCCCEeehhhhcc-CCCcceeEEE--c-----HHHHhhccCCCCCCCCCcCHHHHHHHHHHHH
Confidence 222233579999999 9999999999 6 5788777544444455678888888887775
|
|
| >TIGR02618 tyr_phenol_ly tyrosine phenol-lyase | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.1e-10 Score=119.20 Aligned_cols=191 Identities=12% Similarity=0.026 Sum_probs=134.5
Q ss_pred CCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhh-HHHHhhcC
Q psy14428 201 EYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGH-VRFCTDSR 279 (583)
Q Consensus 201 ~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~-~~~~~~~G 279 (583)
.|..+....+|.++++++++. +.++. |++|+.|+.++ ....++|||.| ++++|... ...++..|
T Consensus 66 ~yag~~s~~~lE~~va~~~G~--------~~av~--v~sGT~Al~ll---~~l~l~pGDeV--psn~~f~Tt~ahIe~~G 130 (450)
T TIGR02618 66 AYAGSRNFYHLERTVRELYGF--------KYVVP--THQGRGAENLL---SQIAIKPGDYV--PGNMYFTTTRYHQEKNG 130 (450)
T ss_pred hhcCCCcHHHHHHHHHHHHCC--------CeEEE--cCCHHHHHHHH---HHhCCCCcCEE--CCceeHHHHHHHHHhCC
Confidence 588888899999999999975 35666 99999999975 34566779977 77877444 44478889
Q ss_pred CeEEEEecc--------cCCCCCCChhhHHHHHHcCC-CCcEEEEeCCCCCC-CCCCCCHHHHHHHHHHHHhcCeEEEEe
Q psy14428 280 LNVGAYRYF--------DNKTNGLDFAGMMEDIKAMP-ERSILFLQTSSHNP-TGVDLSEDQWRQLAVVVKQRHLYPFFD 349 (583)
Q Consensus 280 ~~~~~v~~~--------d~~~~g~d~~~l~~~l~~~~-~~~~~i~i~~p~NP-TG~~~s~~~~~~l~~~a~~~~i~iI~D 349 (583)
+..+.++.. ++.++.+|++.+++.+.... .++.++.+.+++|- .|.++|.++++++.++|++||+.||+|
T Consensus 131 av~vDi~~dea~~~~~~~p~~GniD~~~Le~aI~~~~~~~~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~Gl~vi~D 210 (450)
T TIGR02618 131 ATFVDIIIDEAHDAQLNIPFKGNVDLKKLQKLIDEVGADKIPYICLAVTVNLAGGQPVSMANMREVRELCEAHGIKVFYD 210 (450)
T ss_pred eEEEeeecccccccccCCCCCCCcCHHHHHHHhccccCcccCceEEEEecccCCCeeCCHHHHHHHHHHHHHcCCEEEEE
Confidence 977777541 13347789999999986432 24556777788885 589999999999999999999999999
Q ss_pred ccCCC----CC------CCCCCCchH-HHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHH
Q psy14428 350 MAYLG----LT------SGDFDKDAF-SLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILI 418 (583)
Q Consensus 350 e~Y~~----l~------~~~~~~~~~-~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~ 418 (583)
-+-.. |. +.+ .+.. -.+.+....| .+..|..|+++.|- -|+++. .+ ++++++++...
T Consensus 211 aAR~~gNA~~I~~re~g~~~--~~i~ei~~e~~~~aD--~~~~S~~Kd~~~~~--GG~l~~--~d----~~l~~k~r~~~ 278 (450)
T TIGR02618 211 ATRCVENAYFIKEREQGYED--KSIAEILKEMMSYAD--GCTMSGKKDCLVNI--GGFLCM--ND----DEMFQSAKELV 278 (450)
T ss_pred ccchhhChhhhhcccccccC--CCHHHHHHHHhccCc--EEEEeeccCCCCCC--ceEEEe--CC----HHHHHHHHHHh
Confidence 98643 21 222 1111 1123222222 27788889876551 155554 44 58888888764
|
This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212) |
| >TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase | Back alignment and domain information |
|---|
Probab=99.31 E-value=9.6e-10 Score=117.49 Aligned_cols=297 Identities=11% Similarity=0.034 Sum_probs=168.0
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCC--CCCCCCCCeEEEecC
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGED--FPAFKDNRLAIVQGI 238 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~--g~~~~~~~I~i~~t~ 238 (583)
.+...+|+..|.+....|.- .+.+.+++.+.++.. .... ......+.+..+++.+.+.. +... .+++.+ -++
T Consensus 33 dG~~ylD~~~g~~~~~lGh~--~p~v~~ai~~ql~~~-~~~~-~~~~~~~~~~~lae~l~~~~~~~~~~-~~~~~f-~~~ 106 (412)
T TIGR02407 33 DGKEYIDFFAGAGALNYGHN--NPKLKQALIDYLADD-GIIH-SLDMATEAKREFLETFNEIILKPRGL-DYKVQF-PGP 106 (412)
T ss_pred CCCEEEEcccchhhccCCCC--CHHHHHHHHHHHhhc-ccee-ccccCcHHHHHHHHHHHHhccCccCC-CceEEE-eCC
Confidence 45567888888776666643 477777777766431 0101 11112344455555554321 0001 124544 147
Q ss_pred CchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhh-cC------------CeEEEEecccCCCCC-CChhhHHHHH
Q psy14428 239 SGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTD-SR------------LNVGAYRYFDNKTNG-LDFAGMMEDI 304 (583)
Q Consensus 239 G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~-~G------------~~~~~v~~~d~~~~g-~d~~~l~~~l 304 (583)
+|++|.+.+..+.+.... ..+|+..+-+|.+....... .| ..++.+|..+..... -+++.+++.+
T Consensus 107 sGseA~e~AlklAr~~tg-r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~ 185 (412)
T TIGR02407 107 TGTNAVESALKLARKVTG-RSNVVSFTNAFHGMTLGSLSVTGNRFKRQGAGVPLSNVSRMPYDGYLGGDVDTIAYFEKLL 185 (412)
T ss_pred CchHHHHHHHHHHhhhcC-CCeEEEECCCcCCchHHHHHhcCCcccccCCCCCCCCeEECCCCCccccchhHHHHHHHHH
Confidence 899999987666555433 46788888888766433221 11 122334431100000 1355677766
Q ss_pred HcCC---CCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEE
Q psy14428 305 KAMP---ERSILFLQTSSHNPTGV-DLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLA 380 (583)
Q Consensus 305 ~~~~---~~~~~i~i~~p~NPTG~-~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i 380 (583)
++.. ++..++++..-+++.|. ..+++.+++|.++|+++|+++|+||++..|..-+ .......+ +..+. +
T Consensus 186 ~~~~~~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG---~~~a~~~~-~v~PD---i 258 (412)
T TIGR02407 186 EDSSSGVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTG---TFFSFEPA-GIEPD---I 258 (412)
T ss_pred HhccCCCCceEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccc---hhHHhccc-CCCCC---E
Confidence 5322 34567777777888998 6799999999999999999999999998775433 11111111 11223 3
Q ss_pred ecCccccccc-CccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHH---HHHHH-HhCChhhhhhhhhHHHHHHH
Q psy14428 381 QSFSKNMGLY-GERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGA---RIVTE-ILSDPKLKAQCDETERIMSQ 455 (583)
Q Consensus 381 ~S~SK~~~l~-GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q---~~~~~-~l~~~~~~~~~~~~~~~~~~ 455 (583)
.+|||.++ + |+|+|++++ + +++ +.+........++.++++. .++.+ +++++.+.++..+....+.+
T Consensus 259 ~~~~K~lg-~~G~pigav~~--~-----~~~-~~~~~~~~~~T~~gnpl~~aaa~a~l~~~i~~~~l~~~~~~~g~~l~~ 329 (412)
T TIGR02407 259 VCLSKSIS-GYGLPLALTLI--K-----PEL-DVWKPGEHNGTFRGNNLAFVTATAALEYYWSDDAFEKAVQRKSEIIQE 329 (412)
T ss_pred EEechhcc-CCccceeEEEE--c-----hhh-hccCCCccCCCCCccHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 36899998 7 999999999 6 343 4443222233444555532 33444 47777777776665554443
Q ss_pred H-HHHHhhc---cCCCccchhhHHHHhcC
Q psy14428 456 L-KILIRGF---YSNPPIHGARIVTEILS 480 (583)
Q Consensus 456 l-~~~~r~~---~~~~p~~g~~i~~~~l~ 480 (583)
+ +.+.... ....+..|.++|..+..
T Consensus 330 ~l~~l~~~~~~~~~~vrg~Gl~~~l~l~~ 358 (412)
T TIGR02407 330 RLDRIVAEYPELIKQVRGRGLMQGIECGD 358 (412)
T ss_pred HHHHHHhhCCCceEeeecceeEEEEEecC
Confidence 3 3332211 22345567777776644
|
Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance. |
| >PRK08114 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.4e-10 Score=120.28 Aligned_cols=208 Identities=13% Similarity=0.048 Sum_probs=149.9
Q ss_pred CCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHH----hhcCCeE
Q psy14428 207 GDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFC----TDSRLNV 282 (583)
Q Consensus 207 G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~----~~~G~~~ 282 (583)
-...|.+.+|+.-+. +..++ +++|+.|+..+ + ..++.+||.|++++..|.+....+ +..|+++
T Consensus 63 t~~~le~~la~LEg~--------~~a~~--~~SGmaAi~~~--~-~~ll~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi~v 129 (395)
T PRK08114 63 THFSLQEAMCELEGG--------AGCAL--YPCGAAAVANA--I-LAFVEQGDHVLMTGTAYEPTQDFCSKILSKLGVTT 129 (395)
T ss_pred hHHHHHHHHHHHhCC--------CeEEE--EhHHHHHHHHH--H-HHHcCCCCEEEEeCCCcHHHHHHHHHHHHhcCcEE
Confidence 346778888886543 35556 77799999975 3 334567999999998997776654 5679988
Q ss_pred EEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhc--CeEEEEeccCCCCCCCCC
Q psy14428 283 GAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQR--HLYPFFDMAYLGLTSGDF 360 (583)
Q Consensus 283 ~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~--~i~iI~De~Y~~l~~~~~ 360 (583)
..++. .|.+.+++.+ .++++++++.+|.||||.+.+ +++|+++|+++ ++++|+|.++.--..-.
T Consensus 130 ~~vd~-------~d~~~l~~~l---~~~TrlV~~EtpsNp~~~v~D---I~~Ia~ia~~~g~g~~lvVDnT~a~p~~~~- 195 (395)
T PRK08114 130 TWFDP-------LIGADIAKLI---QPNTKVVFLESPGSITMEVHD---VPAIVAAVRSVNPDAVIMIDNTWAAGVLFK- 195 (395)
T ss_pred EEECC-------CCHHHHHHhc---CCCceEEEEECCCCCCCEeec---HHHHHHHHHHhCCCCEEEEECCCccccccC-
Confidence 87754 1667777777 567899999999999999887 55667778887 59999999985422111
Q ss_pred CCchHHHHHHHHhcCcEEEEecCcccccccC-ccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCC
Q psy14428 361 DKDAFSLRYFAKEVGQLCLAQSFSKNMGLYG-ERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSD 439 (583)
Q Consensus 361 ~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~G-lRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~ 439 (583)
+...+--|++.|.+|.++-+| +-.|.++. . +++.+.+.........+.++...+.+.+-++.
T Consensus 196 ----------pl~~GaDivv~S~tKyl~Ghsdv~~G~v~~--~-----~~~~~~l~~~~~~~G~~~~p~~a~l~~rgl~T 258 (395)
T PRK08114 196 ----------ALDFGIDISIQAGTKYLVGHSDAMIGTAVA--N-----ARCWEQLRENSYLMGQMVDADTAYMTSRGLRT 258 (395)
T ss_pred ----------HHHcCCcEEEEcCcccccCCCcceeEEEEc--C-----HHHHHHHHHHHHhccCCCCHHHHHHHHcCCCc
Confidence 122356699999999887666 56665554 3 35666676666667778888888888888875
Q ss_pred --hhhhhhhhhHHHHHHHHHH
Q psy14428 440 --PKLKAQCDETERIMSQLKI 458 (583)
Q Consensus 440 --~~~~~~~~~~~~~~~~l~~ 458 (583)
-.+++|.++...+.+.++.
T Consensus 259 L~lR~~~~~~na~~va~~L~~ 279 (395)
T PRK08114 259 LGVRLRQHEESSLKVAEWLAE 279 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 4567777776666666543
|
|
| >PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.2e-10 Score=118.19 Aligned_cols=209 Identities=16% Similarity=0.149 Sum_probs=149.2
Q ss_pred CHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhh----cCCeEE
Q psy14428 208 DAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTD----SRLNVG 283 (583)
Q Consensus 208 ~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~----~G~~~~ 283 (583)
...|.+.+++..+. +..++ ++.|..|+..+ +..++++||.|+++...|......++. .|+++.
T Consensus 57 ~~~le~~la~Le~g--------~~a~~--~~SGmaAi~~~---l~~ll~~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv~v~ 123 (386)
T PF01053_consen 57 VRALEQRLAALEGG--------EDALL--FSSGMAAISAA---LLALLKPGDHIVASDDLYGGTYRLLEELLPRFGVEVT 123 (386)
T ss_dssp HHHHHHHHHHHHT---------SEEEE--ESSHHHHHHHH---HHHHS-TTBEEEEESSSSHHHHHHHHHCHHHTTSEEE
T ss_pred HHHHHHHHHHhhcc--------cceee--ccchHHHHHHH---HHhhcccCCceEecCCccCcchhhhhhhhcccCcEEE
Confidence 36688888887753 56777 88899999875 445567799999999999998776654 588887
Q ss_pred EEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcC-eEEEEeccCCCCCCCCCCC
Q psy14428 284 AYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRH-LYPFFDMAYLGLTSGDFDK 362 (583)
Q Consensus 284 ~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~-i~iI~De~Y~~l~~~~~~~ 362 (583)
.++. . |++.+++++ .++++++++-+|.||+..+.+ +++|+++|+++| +++|+|+.+.....-.
T Consensus 124 ~~d~---~----d~~~l~~~l---~~~t~~v~~EspsNP~l~v~D---l~~i~~~a~~~g~~~~vVDnT~atp~~~~--- 187 (386)
T PF01053_consen 124 FVDP---T----DLEALEAAL---RPNTKLVFLESPSNPTLEVPD---LEAIAKLAKEHGDILVVVDNTFATPYNQN--- 187 (386)
T ss_dssp EEST---T----SHHHHHHHH---CTTEEEEEEESSBTTTTB------HHHHHHHHHHTTT-EEEEECTTTHTTTC----
T ss_pred EeCc---h----hHHHHHhhc---cccceEEEEEcCCCccccccc---HHHHHHHHHHhCCceEEeeccccceeeec---
Confidence 7744 2 788999988 679999999999999966664 677788899998 9999999986543221
Q ss_pred chHHHHHHHHhcCcEEEEecCcccccccCcc-ceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCC--
Q psy14428 363 DAFSLRYFAKEVGQLCLAQSFSKNMGLYGER-VGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSD-- 439 (583)
Q Consensus 363 ~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlR-iG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~-- 439 (583)
++ ..+--|++.|.+|.++-.|-- .|.+++ .+. +++.++++..........++...+.+.+-+.+
T Consensus 188 ---pL-----~~GaDivv~S~TKyl~Ghsdv~~G~vv~--~~~---~~~~~~l~~~~~~~G~~~~p~da~ll~rgl~Tl~ 254 (386)
T PF01053_consen 188 ---PL-----ELGADIVVHSATKYLSGHSDVMGGAVVV--NGS---SELYDRLREFRRLLGATLSPFDAWLLLRGLRTLP 254 (386)
T ss_dssp ---GG-----GGT-SEEEEETTTTTTTSSSE-EEEEEE--SSH---HHHHHHHHHHHHHHT-B--HHHHHHHHHHHTTHH
T ss_pred ---cC-----cCCceEEEeeccccccCCcceeeEEEEE--Cch---hhhhhhhcchhhhcCccchHHHHHHHhcCCCcHH
Confidence 11 124468899999998644433 566666 432 47888888888888888899999988888886
Q ss_pred hhhhhhhhhHHHHHHHHHH
Q psy14428 440 PKLKAQCDETERIMSQLKI 458 (583)
Q Consensus 440 ~~~~~~~~~~~~~~~~l~~ 458 (583)
-.++++.++.+++.+.++.
T Consensus 255 ~R~~~~~~nA~~lA~~L~~ 273 (386)
T PF01053_consen 255 LRMERQNENAEALAEFLEE 273 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3466666666666655543
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B .... |
| >PRK05937 8-amino-7-oxononanoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.9e-10 Score=116.71 Aligned_cols=204 Identities=11% Similarity=-0.012 Sum_probs=120.4
Q ss_pred CccccCCccccCCCCCCCCChHHHHHHHHHhccC-----CCCCCC----CCCCCHHHHHHHHHHHhCCCCCCCCCCCeEE
Q psy14428 164 KKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKN-----LDHEYA----NIGGDAKFCKLAAQLAYGEDFPAFKDNRLAI 234 (583)
Q Consensus 164 ~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~-----~~~~Y~----~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i 234 (583)
..++|+..++-+-...|.+.+.+.+++.+...+. ...+.. ...-..++|+.+|++++.. +-++.
T Consensus 5 ~~~~~~s~~YL~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~~~-------~~l~~ 77 (370)
T PRK05937 5 LSIDFVTNDFLGFSRSDTLVHEVEKRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHFHGAP-------EAFIV 77 (370)
T ss_pred ceEEeECCCccCCCCCHHHHHHHHHHHHHhccccCCCCCCCCCcCcccCChHHHHHHHHHHHHHhCCC-------eEEEE
Confidence 4677776666433333333445555554442110 011111 2233578899999988642 23666
Q ss_pred EecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCC---CCc
Q psy14428 235 VQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMP---ERS 311 (583)
Q Consensus 235 ~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~---~~~ 311 (583)
++|....+. ++..+..+||.|++..-.+......++......+.++. .|++.+++.++... +.+
T Consensus 78 --~sG~~a~~~----~~~~~~~~~d~ii~d~~~H~sv~~~~~~~~~~~~~~~~-------~d~~~l~~~l~~~~~~~~~~ 144 (370)
T PRK05937 78 --PSGYMANLG----LCAHLSSVTDYVLWDEQVHISVVYSLSVISGWHQSFRH-------NDLDHLESLLESCRQRSFGR 144 (370)
T ss_pred --CChHHHHHH----HHHHhCCCCCEEEEEhhhhHHHHHHHHHcCCceEEecC-------CCHHHHHHHHHhhhccCCCc
Confidence 777743332 23344555777776555565555555554433333322 37888888886432 346
Q ss_pred EEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccC
Q psy14428 312 ILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYG 391 (583)
Q Consensus 312 ~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~G 391 (583)
+++++++++|+||.+.+ +++|.++|+++++++++||++..-.++.. .......+ ...+..+.+.||||.+|..|
T Consensus 145 ~~v~v~~v~s~~G~i~p---l~eI~~l~~~~~~~livDea~~~G~~g~~--g~g~~~~~-~~~~~~~~~~tlsK~~g~~G 218 (370)
T PRK05937 145 IFIFVCSVYSFKGTLAP---LEQIIALSKKYHAHLIVDEAHAMGIFGDD--GKGFCHSL-GYENFYAVLVTYSKALGSMG 218 (370)
T ss_pred EEEEEecCCCCCCCccC---HHHHHHHHHHcCCEEEEECCccccccCCC--CCchHHhh-CCCCCcEEEEechhhhhcCc
Confidence 67788999999999998 55667888999999999999986433310 00011111 11122367899999999777
Q ss_pred cc
Q psy14428 392 ER 393 (583)
Q Consensus 392 lR 393 (583)
.+
T Consensus 219 ~~ 220 (370)
T PRK05937 219 AA 220 (370)
T ss_pred eE
Confidence 43
|
|
| >PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.4e-10 Score=118.30 Aligned_cols=191 Identities=12% Similarity=0.002 Sum_probs=127.8
Q ss_pred HHHHHHHHHhccCCCCCCCC-CCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEE
Q psy14428 185 SVKEAERRIYEKNLDHEYAN-IGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYF 263 (583)
Q Consensus 185 ~v~~a~~~~~~~~~~~~Y~~-~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv 263 (583)
.-.+++.++++.+ .++. ..-..+|.+++++|++. ++.+. ++.|+.|+.++... .-.++||+|++
T Consensus 6 e~~~~v~~~l~s~---~~~~~g~~~~~fE~~~a~~~g~--------~~~~~--~~sgt~Al~~al~~--l~~~~gdeVi~ 70 (363)
T PF01041_consen 6 EEIDAVLEVLRSG---WLSTYGPYVEEFEKEFAEYFGV--------KYAVA--VSSGTSALHLALRA--LGLGPGDEVIV 70 (363)
T ss_dssp HHHHHHHHHHHHT---CCSSSSHHHHHHHHHHHHHHTS--------SEEEE--ESSHHHHHHHHHHH--TTGGTTSEEEE
T ss_pred HHHHHHHHHHHhC---CccCCCHHHHHHHHHHHHHhCC--------CeEEE--eCChhHHHHHHHHh--cCCCcCceEec
Confidence 3445555555543 2222 33468999999999975 45666 88899999996322 22256999999
Q ss_pred cCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcC
Q psy14428 264 PTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRH 343 (583)
Q Consensus 264 ~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~ 343 (583)
|.-+|......+...|++++.+++ |++++.+|++.+++.+ +++++++++.+. -| ...++.+|.++|+++|
T Consensus 71 p~~t~~~~~~ai~~~G~~pv~~Di-~~~~~~id~~~~~~~i---~~~t~ai~~~h~---~G---~~~d~~~i~~~~~~~~ 140 (363)
T PF01041_consen 71 PAYTFPATASAILWAGAEPVFVDI-DPETLNIDPEALEKAI---TPKTKAILVVHL---FG---NPADMDAIRAIARKHG 140 (363)
T ss_dssp ESSS-THHHHHHHHTT-EEEEE-B-ETTTSSB-HHHHHHHH---HTTEEEEEEE-G---GG---B---HHHHHHHHHHTT
T ss_pred CCCcchHHHHHHHHhccEEEEEec-cCCcCCcCHHHHHHHh---ccCccEEEEecC---CC---CcccHHHHHHHHHHcC
Confidence 999999999999999999999999 7888999999999998 566777775332 23 2236888999999999
Q ss_pred eEEEEeccCCCCCC-CCCCCchHHHHHHHHhcCcEEEEecC--cccccccCccceEEEEEcCCchhHHHHHHHHHHHH
Q psy14428 344 LYPFFDMAYLGLTS-GDFDKDAFSLRYFAKEVGQLCLAQSF--SKNMGLYGERVGTFSVLTPTSDETERIMSQLKILI 418 (583)
Q Consensus 344 i~iI~De~Y~~l~~-~~~~~~~~~~~~~~~~~~~vi~i~S~--SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~ 418 (583)
++||||.+...... .+ . .+ ... ..+.+.|| +|.+. .---|.++. .+ +++.++++.+.
T Consensus 141 i~lIeD~a~a~g~~~~g--~---~~----G~~-gd~~~fSf~~~K~i~--~geGG~v~~--~~----~~~~~~~~~~~ 200 (363)
T PF01041_consen 141 IPLIEDAAQAFGARYKG--R---PV----GSF-GDIAIFSFHPTKIIT--TGEGGAVVT--ND----PELAERARALR 200 (363)
T ss_dssp -EEEEE-TTTTT-EETT--E---ET----TSS-SSEEEEESSTTSSS---SSS-EEEEE--ST----HHHHHHHHHHT
T ss_pred CcEEEccccccCceeCC--E---ec----cCC-CCceEecCCCCCCCc--CCCCeeEEe--cH----HHHHHHhhhhh
Confidence 99999999876442 22 0 01 111 24566666 68773 444588888 65 46777777653
|
The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A .... |
| >COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.5e-09 Score=111.36 Aligned_cols=217 Identities=15% Similarity=0.096 Sum_probs=147.0
Q ss_pred CCCccccCCccccCCCCCCCCChHHHHHHHHHhcc-C-----CCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEE
Q psy14428 162 HPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEK-N-----LDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIV 235 (583)
Q Consensus 162 ~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~-~-----~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~ 235 (583)
....+||+..++- |.. ..+.+.++..+.++. + .-+-++...=..+|.+.+|+|++.. +-++.
T Consensus 38 ~~~~~nf~SNdYL---GLa-~~~~~~~a~~~~~~~~g~g~~gsR~i~G~~~~h~~LE~~lA~f~g~e-------~al~f- 105 (388)
T COG0156 38 GRKVLNFCSNDYL---GLA-SHPELIEAAKAAIRRYGVGAGGSRLISGTSDLHVELEEELADFLGAE-------AALLF- 105 (388)
T ss_pred CceeEeeeccCcc---ccc-CCHHHHHHHHHHHHHhCCCCCCcCcccCCcHHHHHHHHHHHHHhCCC-------cEEEE-
Confidence 4567888887763 322 234566666655544 1 1122333444578999999999753 44555
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCC-C--CcE
Q psy14428 236 QGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMP-E--RSI 312 (583)
Q Consensus 236 ~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~-~--~~~ 312 (583)
++|=..-+. ++..++.++|.|+...-.......-++..+++++.+.- -|++.+++.+++.. . +.+
T Consensus 106 -~SGy~AN~~----~i~~l~~~~dli~~D~lnHASiidG~rls~a~~~~f~H-------nD~~~Le~~l~~~~~~~~~~~ 173 (388)
T COG0156 106 -SSGFVANLG----LLSALLKKGDLIFSDELNHASIIDGIRLSRAEVRRFKH-------NDLDHLEALLEEARENGARRK 173 (388)
T ss_pred -cccchhHHH----HHHHhcCCCcEEEEechhhhhHHHHHHhCCCcEEEecC-------CCHHHHHHHHHhhhccCCCce
Confidence 555544443 35567777999998888888888888888998877643 18899999987631 1 345
Q ss_pred EEEeCCCCCCCCCCCC----HHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHH-HhcCcEEEEecCcccc
Q psy14428 313 LFLQTSSHNPTGVDLS----EDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFA-KEVGQLCLAQSFSKNM 387 (583)
Q Consensus 313 ~i~i~~p~NPTG~~~s----~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~-~~~~~vi~i~S~SK~~ 387 (583)
+|+ |-.++| ...+.+|++++++|+.++++||+|+--.+++. ..-....+. ...+..|.++||||.|
T Consensus 174 ~Iv-------tegVfSMdGdiApL~~l~~L~~ky~a~L~VDEAHa~Gv~G~~--GrG~~e~~g~~~~~vdi~~gTlsKAl 244 (388)
T COG0156 174 LIV-------TEGVFSMDGDIAPLPELVELAEKYGALLYVDEAHAVGVLGPN--GRGLAEHFGLEPEEVDIIVGTLGKAL 244 (388)
T ss_pred EEE-------EeccccCCCCcCCHHHHHHHHHHhCcEEEEEccccccccCCC--CccHHHHhCCCCccceEEEEEchhhh
Confidence 555 333333 34688889999999999999999998777742 111222321 1234589999999999
Q ss_pred cccCccceEEEEEcCCchhHHHHHHHHHHHHhcc
Q psy14428 388 GLYGERVGTFSVLTPTSDETERIMSQLKILIRGF 421 (583)
Q Consensus 388 ~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~ 421 (583)
|..| ||+.+ + ..+++.+....+..
T Consensus 245 Gs~G---g~v~g--~-----~~~~d~L~~~ar~~ 268 (388)
T COG0156 245 GSSG---GYIAG--S-----AALIDYLRNRARPF 268 (388)
T ss_pred cccC---ceeeC--c-----HHHHHHHHHhCCce
Confidence 9888 89998 6 68999998875555
|
|
| >PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.6e-09 Score=112.12 Aligned_cols=271 Identities=12% Similarity=0.070 Sum_probs=149.2
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhcc-CCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCC-CCCeEEEecC
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEK-NLDHEYANIGGDAKFCKLAAQLAYGEDFPAFK-DNRLAIVQGI 238 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~-~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~-~~~I~i~~t~ 238 (583)
.+...+|+..|.+....|.- .|.+.+++.+.+.. ..... ..-..+.+..+++.+.+....+-. .+++.+ -++
T Consensus 37 dG~~ylD~~~g~~~~~lGh~--~p~v~~ai~~ql~~~~~~~~---~~~~~~~~~~lae~l~~~~~~~~~~~~~~~f-~~~ 110 (425)
T PRK09264 37 DGKEYIDFFAGAGALNYGHN--NPVLKQALIDYLQRDGITHG---LDMHTTAKREFLETFEETILKPRGLDYKVQF-TGP 110 (425)
T ss_pred CCCEeeecccchhhccCCCC--CHHHHHHHHHHHHhcccccc---cccCcHHHHHHHHHHHHhhcCCcCCCceEEE-eCC
Confidence 45567888888776666653 46777777665543 11111 111123444455554432100001 124544 147
Q ss_pred CchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhc----------C---CeEEEEecccCCCCC-CChhhHHHHH
Q psy14428 239 SGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDS----------R---LNVGAYRYFDNKTNG-LDFAGMMEDI 304 (583)
Q Consensus 239 G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~----------G---~~~~~v~~~d~~~~g-~d~~~l~~~l 304 (583)
+|++|.+.+..+.+.... ..+|+...-+|.+.....-.. + ..+..+|..+..... -|++.+++.+
T Consensus 111 sGseA~e~AlklAr~~tg-r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l 189 (425)
T PRK09264 111 TGTNAVEAALKLARKVTG-RTNIVAFTNGFHGMTLGSLAVTGNSHKRQGAGVPLNNVTRMPYDGYFGGDVDTLAYLEKLL 189 (425)
T ss_pred CHHHHHHHHHHHHHHhcC-CCeEEEECCccCCccHHHHHhcCCcccccCCCCCCCCeEEeCCCCccccchhHHHHHHHHH
Confidence 899999988666655533 467888888877653321111 1 123444441110000 1566777777
Q ss_pred HcCC---CCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEE
Q psy14428 305 KAMP---ERSILFLQTSSHNPTGV-DLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLA 380 (583)
Q Consensus 305 ~~~~---~~~~~i~i~~p~NPTG~-~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i 380 (583)
++.. +...++++-.-+.-.|. +++++.+++|.++|++||+++|+||++.+|...+ .......+ +..+. +
T Consensus 190 ~~~~~~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG---~~~~~~~~-~v~PD---i 262 (425)
T PRK09264 190 EDSSSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTG---TFFSFERA-GITPD---I 262 (425)
T ss_pred HhccCCCCceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCCcccc---HHHHHhhc-CCCCC---E
Confidence 5432 23445554333444564 6789999999999999999999999998875443 11122221 11223 3
Q ss_pred ecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHH----HHhCChhhhhhhhhHHHHH
Q psy14428 381 QSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVT----EILSDPKLKAQCDETERIM 453 (583)
Q Consensus 381 ~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~----~~l~~~~~~~~~~~~~~~~ 453 (583)
-+|||.++..|+++|++++ + +++ ..+........++.++++..++. .+++++.+.++.+.....+
T Consensus 263 ~t~~K~l~~~G~pigav~~--~-----~~i-~~~~~~~~~~T~~gnp~~~aaa~a~l~~~~~~~~l~~~~~~~g~~l 331 (425)
T PRK09264 263 VTLSKSISGYGLPMALVLI--K-----PEL-DVWKPGEHNGTFRGNNLAFVTATAALEEYWSDDAFEKEVKAKGELV 331 (425)
T ss_pred EEeccccCCCccceEEEEE--c-----hhh-hccCCCccCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4779999944999999999 6 244 33332222223444445544443 3345555555555554433
|
|
| >COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.25 E-value=7.6e-10 Score=117.12 Aligned_cols=173 Identities=16% Similarity=0.134 Sum_probs=133.8
Q ss_pred CCHHHHHHHHHHHhCCCCCCCC-CCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCCh----hhHHHHhhcCCe
Q psy14428 207 GDAKFCKLAAQLAYGEDFPAFK-DNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWN----GHVRFCTDSRLN 281 (583)
Q Consensus 207 G~~~Lr~aia~~~~~~~g~~~~-~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~----~~~~~~~~~G~~ 281 (583)
-+++.|+.+|++++. + .++|++ |.|+++++.+++..+.....+||+|++.+-.++ ++....+..|++
T Consensus 67 ~~e~aRe~va~~~~a------~~~~eIvf--t~~tT~aln~va~~l~~~~~~gdeIv~s~~EH~sn~~pw~~~~~~~Ga~ 138 (405)
T COG0520 67 LYEAAREAVARFLNA------DSSDEIVF--TRGTTEALNLVARGLGRSLKPGDEIVVSDLEHHSNIVPWQELAKRTGAK 138 (405)
T ss_pred HHHHHHHHHHHHhCC------CCCCeEEE--eCChhHHHHHHHHHhhhhhcCCCEEEEccCcchhhHHHHHHHHHhcCcE
Confidence 357889999999863 4 489999 999999999976554332566999999887654 345566667999
Q ss_pred EEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCC
Q psy14428 282 VGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFD 361 (583)
Q Consensus 282 ~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~ 361 (583)
++.+|+ + ++..++.+.++..+ +++++++.++.-+|-||.+.+ +++|+++|+++|+++++|-+.+-=...
T Consensus 139 v~~i~~-~-~~g~~~~~~~~~~i---~~~Tklvais~vSn~tG~~~p---v~~I~~la~~~ga~v~VDaaq~~~h~~--- 207 (405)
T COG0520 139 VRVIPL-D-DDGLLDLDALEKLI---TPKTKLVALSHVSNVTGTVNP---VKEIAELAHEHGALVLVDAAQAAGHLP--- 207 (405)
T ss_pred EEEEec-C-CCCCcCHHHHHHhc---CCCceEEEEECccccccccch---HHHHHHHHHHcCCEEEEECccccCccC---
Confidence 999999 5 45788999998866 789999999999999999987 667799999999999999985322211
Q ss_pred CchHHHHHHHHhcCcEEEEecCcc-cccccCccceEEEEEcCCchhHHHHHHHH
Q psy14428 362 KDAFSLRYFAKEVGQLCLAQSFSK-NMGLYGERVGTFSVLTPTSDETERIMSQL 414 (583)
Q Consensus 362 ~~~~~~~~~~~~~~~vi~i~S~SK-~~~l~GlRiG~lv~~~p~~~~~~~li~~l 414 (583)
..+ +..+.-++..|--| .+|-.| +|.+.+ . +++++.+
T Consensus 208 ---idv----~~l~~Df~afsgHKwl~gP~G--iGvLy~--r-----~~~l~~l 245 (405)
T COG0520 208 ---IDV----QELGCDFLAFSGHKWLLGPTG--IGVLYV--R-----KELLEEL 245 (405)
T ss_pred ---CCc----hhcCCCEEEEcccccccCCCc--eEEEEE--c-----hHHHhhc
Confidence 112 22356788999999 666336 699999 6 5788777
|
|
| >PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.6e-09 Score=115.94 Aligned_cols=215 Identities=13% Similarity=0.066 Sum_probs=143.0
Q ss_pred CHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhH----HHHhhcCCeEE
Q psy14428 208 DAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHV----RFCTDSRLNVG 283 (583)
Q Consensus 208 ~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~----~~~~~~G~~~~ 283 (583)
...|++.+|++.+. .+.|++ ++|. .|+.++ +..+.++||+|++++..|.... ..++..|++++
T Consensus 71 ~~~le~~la~l~g~-------~~~v~f--sSG~-~Ai~~a---l~~ll~~Gd~VI~~~~~y~~t~~~~~~~l~~~Gi~v~ 137 (437)
T PRK05613 71 VEALENRIASLEGG-------VHAVAF--ASGQ-AAETAA---ILNLAGAGDHIVTSPRLYGGTETLFLVTLNRLGIEVT 137 (437)
T ss_pred HHHHHHHHHHHhCC-------CeEEEe--CCHH-HHHHHH---HHHhcCCCCEEEECCCccHHHHHHHHHHHHhcCeEEE
Confidence 47788888888753 245555 5555 777654 3344577999999999998874 34577899998
Q ss_pred EEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCc
Q psy14428 284 AYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKD 363 (583)
Q Consensus 284 ~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~ 363 (583)
.++. +. |++.+++.+ +++++++++.++.||+|.+.+ +++|.++|+++|+++|+|.++..-..-.
T Consensus 138 ~vd~--~~----d~e~l~~~l---~~~tk~V~~e~~~Np~~~v~d---i~~I~~la~~~gi~livD~t~a~g~~~~---- 201 (437)
T PRK05613 138 FVEN--PD----DPESWQAAV---QPNTKAFFGETFANPQADVLD---IPAVAEVAHRNQVPLIVDNTIATAALVR---- 201 (437)
T ss_pred EECC--CC----CHHHHHHhC---CccCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCeEEEECCCccccccC----
Confidence 8862 21 778888777 567888888999999998877 5566778889999999999974422111
Q ss_pred hHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCch--------------------h---------HHHHH-HH
Q psy14428 364 AFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSD--------------------E---------TERIM-SQ 413 (583)
Q Consensus 364 ~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~--------------------~---------~~~li-~~ 413 (583)
++ ..+--+++.|++|.++-.|.-+|-+++..++-+ . .+.++ +.
T Consensus 202 --p~-----~~GaDivv~S~~K~l~G~gd~~gG~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (437)
T PRK05613 202 --PL-----ELGADVVVASLTKFYTGNGSGLGGVLIDGGKFDWTVERDGKPVFPYFVTPDPAYHGLKYADLGAPAFGLKA 274 (437)
T ss_pred --hH-----HhCCCEEEeeccceecCCCcceeEEEEecCcccccccccccccCCCCCCCccccccccccccchHHHHHHH
Confidence 11 124568899999999866776666555211100 0 00111 11
Q ss_pred HHHHHhccccCCChHHHHHHHHHhCC--hhhhhhhhhHHHHHHHHHH
Q psy14428 414 LKILIRGFYSNPPIHGARIVTEILSD--PKLKAQCDETERIMSQLKI 458 (583)
Q Consensus 414 l~~~~~~~~~~~s~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~l~~ 458 (583)
..........+.+++..+.+.+-++. -.++++.++..++.+.++.
T Consensus 275 ~~~~~~~~G~~~~p~~a~l~~rgl~TL~lR~~~~~~nA~~lA~~L~~ 321 (437)
T PRK05613 275 RAGLLRDTGATLSPFNAWVTAQGLDTLSLRLERHNENAIKVAEFLNN 321 (437)
T ss_pred HHHHHHhcCCCCCHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHc
Confidence 22334455677788888888887775 3566776666666665543
|
|
| >PRK13237 tyrosine phenol-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.9e-09 Score=112.29 Aligned_cols=191 Identities=13% Similarity=0.005 Sum_probs=130.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCCh-hhHHHHhhc
Q psy14428 200 HEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWN-GHVRFCTDS 278 (583)
Q Consensus 200 ~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~-~~~~~~~~~ 278 (583)
-.|.......+|.++++++++.+ .++. |+.|+.|++++ +...+++||.| +..++. .....+...
T Consensus 72 d~Yagd~s~~~LE~~vAe~lG~e--------~aV~--v~sGTaAl~ll---~~l~v~pGd~V--p~n~~f~Tt~ahI~~~ 136 (460)
T PRK13237 72 EAYAGSRNFYHLEETVQEYYGFK--------HVVP--THQGRGAENLL---SRIAIKPGQYV--PGNMYFTTTRYHQELN 136 (460)
T ss_pred hhhcCCCcHHHHHHHHHHHHCCC--------eEEE--eCCHHHHHHHH---HHhCCCCcCEE--CCccchHhhHHHHHhC
Confidence 45888888999999999999764 3555 88999999984 33456679965 444343 334437778
Q ss_pred CCeEEEEec--------ccCCCCCCChhhHHHHHHcC-CCCcEEEEeCCCCCCC-CCCCCHHHHHHHHHHHHhcCeEEEE
Q psy14428 279 RLNVGAYRY--------FDNKTNGLDFAGMMEDIKAM-PERSILFLQTSSHNPT-GVDLSEDQWRQLAVVVKQRHLYPFF 348 (583)
Q Consensus 279 G~~~~~v~~--------~d~~~~g~d~~~l~~~l~~~-~~~~~~i~i~~p~NPT-G~~~s~~~~~~l~~~a~~~~i~iI~ 348 (583)
|+..+.+.. .++.++.+|++.+++.+... .+++.++.+.+++|-. |...|.++++++.++|+++|+.||+
T Consensus 137 Ga~fvDi~~d~a~~~~~~~p~tgnlD~d~Le~~I~~~~~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~Vi~ 216 (460)
T PRK13237 137 GGIFVDIIIDEAHDAQSDHPFKGNVDLDKLQALIDEVGAENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKVFF 216 (460)
T ss_pred CcEEEeeecccccccccCCCCCCCcCHHHHHHHhccccCCccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEEEE
Confidence 886655532 02445789999999999643 2345566677788998 6899999999999999999999999
Q ss_pred eccCC-C---CC------CCCCCCchH-HHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHH
Q psy14428 349 DMAYL-G---LT------SGDFDKDAF-SLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKIL 417 (583)
Q Consensus 349 De~Y~-~---l~------~~~~~~~~~-~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~ 417 (583)
|-+.. + |. |.+ .+.. -.+.+.. . --+...|++|+++.+- -|+++. .+ +++.++++..
T Consensus 217 DaAra~gna~fI~~re~~y~~--~~i~ei~~e~~s-~-aD~~t~S~~K~~~~~~--GG~i~t--~D----~eL~~~~r~~ 284 (460)
T PRK13237 217 DATRCVENAYFIKEREEGYQD--KSIKEIVHEMFS-Y-ADGCTMSGKKDCLVNI--GGFLAM--ND----EELFDEAKEL 284 (460)
T ss_pred ECcchhcChhhhcccccccCC--CcHhHHhhhccC-c-CcEEEEeCCCCCCCCC--ceEEEE--CC----HHHHHHHHHh
Confidence 99864 2 11 222 1110 0111111 1 2345667999987432 377777 55 5788888765
|
|
| >PRK06058 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.9e-09 Score=116.27 Aligned_cols=255 Identities=13% Similarity=0.028 Sum_probs=155.9
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
.+...+|+..|.+....|.- .+.+.+++.+.+++. ..+....+..+.+..+|+.+....... ..+++.+ +++|
T Consensus 54 dG~~ylD~~~g~~~~~lGh~--~p~v~~ai~~q~~~~--~~~~~~~~~~~~~~~la~~l~~~~p~~-~~~~v~f--~~sG 126 (443)
T PRK06058 54 DGNRLIDLGSGIAVTSVGNS--APRVVEAVREQVARF--THTCFMVTPYEGYVAVAEQLNRLTPGD-HEKRSAL--FNSG 126 (443)
T ss_pred CCCEEEEcCcchhhhccCCC--CHHHHHHHHHHHHhc--cCccccccCCHHHHHHHHHHHHhCCCC-CCCEEEE--eCCc
Confidence 45567888888776666643 467777777766542 122222234466666777775433211 1247787 8888
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhc-C--------C-----eEEEEecccCCCC----CCCh-hh--
Q psy14428 241 SGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDS-R--------L-----NVGAYRYFDNKTN----GLDF-AG-- 299 (583)
Q Consensus 241 ~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~-G--------~-----~~~~v~~~d~~~~----g~d~-~~-- 299 (583)
++|.+.+..+.+.... .++|+..+++|.+........ + . .+..+|.....+. ..+. +.
T Consensus 127 seA~e~AlklAr~~tg-r~~ii~~~~~yHG~t~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (443)
T PRK06058 127 AEAVENAVKIARSYTG-RQAVVVFDHAYHGRTNLTMALTAKSMPYKSGFGPFAPEVYRAPMSYPYRDPKGLATDGEEAAA 205 (443)
T ss_pred HHHHHHHHHHHHHhhC-CCeEEEECCCcCcChHHHHhhcCCCcccccccCCCCCCceEcCCCcccccccccccchHHHHH
Confidence 9999987666555544 578999999998875433221 1 0 1222222111000 0000 11
Q ss_pred -HHHHHHcC-CCCcEEEEeCCCCCCCCCCC--CHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcC
Q psy14428 300 -MMEDIKAM-PERSILFLQTSSHNPTGVDL--SEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVG 375 (583)
Q Consensus 300 -l~~~l~~~-~~~~~~i~i~~p~NPTG~~~--s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~ 375 (583)
..+.+++. .......++..|-++.|.+. +++-+++|.++|++||+++|.||++.+|...+ ....... .+-.+
T Consensus 206 ~~~~~l~~~~~~~~iAavi~EPi~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfgRtG---~~fa~~~-~gv~P 281 (443)
T PRK06058 206 RAITVIEKQVGADNLAAVIIEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTG---AWFACEH-EGIVP 281 (443)
T ss_pred HHHHHHHHhhCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCh---hhhHHHh-cCCCC
Confidence 11222221 22334445568888887544 58899999999999999999999999886544 1111211 12223
Q ss_pred cEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhC
Q psy14428 376 QLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILS 438 (583)
Q Consensus 376 ~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~ 438 (583)
.++ +++|.++ .|+++|++++ + +++++.+........++.+++++.++.+.++
T Consensus 282 Div---~~gK~l~-~G~Pi~av~~--~-----~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~ 333 (443)
T PRK06058 282 DLI---TTAKGIA-GGLPLSAVTG--R-----AEIMDAPHPGGLGGTYGGNPVACAAALAAIE 333 (443)
T ss_pred CEE---EEccccc-CCCccEEEEE--c-----HHHHhhccCCCCCCCCCCCHHHHHHHHHHHH
Confidence 344 4489999 9999999999 6 5788877654444566788999888888764
|
|
| >PRK04311 selenocysteine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.7e-09 Score=114.65 Aligned_cols=219 Identities=16% Similarity=0.129 Sum_probs=142.0
Q ss_pred CccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCC---CC--CHHHHHHHHHHHhCCCCCCCCCCCeEEEecC
Q psy14428 164 KKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANI---GG--DAKFCKLAAQLAYGEDFPAFKDNRLAIVQGI 238 (583)
Q Consensus 164 ~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~---~G--~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~ 238 (583)
..||.+.-....+.+.+..++.+.+++.+.........|.-. .| +..+++.+|++.+. +..++ ++
T Consensus 80 ~vinatg~v~~tNlg~s~l~~~v~eav~~~~~~~~~le~~l~~g~~g~r~~~~e~~lA~l~Ga--------e~a~v--v~ 149 (464)
T PRK04311 80 PVINATGVVLHTNLGRALLSEAAIEAVTEAARGYSNLEYDLATGKRGSRDRALAALLCALTGA--------EDALV--VN 149 (464)
T ss_pred ceecCCccEEeccCCCCCCCHHHHHHHHHHHhcccccccchhhcccchHHHHHHHHHHHHhCC--------CeEEE--EC
Confidence 345544333333445555678888888777754322233221 12 36788889888753 34566 77
Q ss_pred CchhHHHHHHHHHHHhCCCCCEEEEcCCCChh------hHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcE
Q psy14428 239 SGSGSLRVGTAFLERFYPGVKTVYFPTPTWNG------HVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSI 312 (583)
Q Consensus 239 G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~------~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~ 312 (583)
+++.|+.++ +..+ .+||+|++++..+.. ....++..|++++.++. +. ..+++++++++ +++++
T Consensus 150 sgtaAl~l~---l~~l-~~GdeVIvs~~e~~~~ggs~~i~~~~~~~G~~l~~v~~-~~---~t~~~dle~aI---~~~Tk 218 (464)
T PRK04311 150 NNAAAVLLA---LNAL-AAGKEVIVSRGELVEIGGAFRIPDVMRQAGARLVEVGT-TN---RTHLRDYEQAI---NENTA 218 (464)
T ss_pred CHHHHHHHH---HHHh-CCCCEEEEcchhhhhcCcchhhHHHHHHCCcEEEEECC-CC---CCCHHHHHHhc---CccCe
Confidence 778898875 3444 559999998764321 23456778999998876 22 23678888877 67789
Q ss_pred EEEeCCCCCCC--CCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCC----CCCCCCchHHHHHHHHhcCcEEEEecCccc
Q psy14428 313 LFLQTSSHNPT--GVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLT----SGDFDKDAFSLRYFAKEVGQLCLAQSFSKN 386 (583)
Q Consensus 313 ~i~i~~p~NPT--G~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~----~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~ 386 (583)
++++.+++||+ |.. ..-.+++|+++|+++|+++|+|...+-+. ++-. ..+.+....+ .+--+++.|..|.
T Consensus 219 lV~~vh~sN~~i~G~~-~~~dl~eI~~lak~~gi~vivD~gsG~l~~~~~~gl~--~~p~~~~~l~-~GaDiv~fSg~K~ 294 (464)
T PRK04311 219 LLLKVHTSNYRIEGFT-KEVSLAELAALGKEHGLPVVYDLGSGSLVDLSQYGLP--DEPTVQELLA-AGVDLVTFSGDKL 294 (464)
T ss_pred EEEEEcCCCccccccC-CcCCHHHHHHHHHHcCCeEEEECCCcccccchhccCC--CCCchhhHHh-cCCcEEEecCccc
Confidence 99999999994 421 22347788999999999999999643331 2100 0112222222 3456899999999
Q ss_pred ccccCccceEEEEEcCCchhHHHHHHHHHH
Q psy14428 387 MGLYGERVGTFSVLTPTSDETERIMSQLKI 416 (583)
Q Consensus 387 ~~l~GlRiG~lv~~~p~~~~~~~li~~l~~ 416 (583)
+|-| ..|++++ . +++++++++
T Consensus 295 LgGp--~~G~i~g--~-----~~li~~l~~ 315 (464)
T PRK04311 295 LGGP--QAGIIVG--K-----KELIARLKK 315 (464)
T ss_pred ccCC--ceEEEEE--c-----HHHHHHHhh
Confidence 8644 5899998 5 578887774
|
|
| >PRK06434 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.3e-09 Score=112.92 Aligned_cols=205 Identities=16% Similarity=0.123 Sum_probs=130.9
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhH----HHHhhcCCe
Q psy14428 206 GGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHV----RFCTDSRLN 281 (583)
Q Consensus 206 ~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~----~~~~~~G~~ 281 (583)
+-..+|.+.++++.+. +..++ +++|+.|+.++ +..+..+||+|+++.+.|.... ..+...|++
T Consensus 64 P~~~~lE~~la~leg~--------~~av~--~sSG~aAi~~a---l~all~~GD~Vl~~~~~yg~t~~~~~~~~~~~Gi~ 130 (384)
T PRK06434 64 PTVQAFEEKYAVLENA--------EHALS--FSSGMGAITSA---ILSLIKKGKRILSISDLYGQTFYFFNKVLKTLGIH 130 (384)
T ss_pred hhHHHHHHHHHHHhCC--------CcEEE--eCCHHHHHHHH---HHHHhCCCCEEEEecCccchHHHHHHHHHHhcCcE
Confidence 3357788888888764 34555 77888999986 3344667999999987655544 566778999
Q ss_pred EEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCC
Q psy14428 282 VGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFD 361 (583)
Q Consensus 282 ~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~ 361 (583)
++.+++ ++. ..++ + ..++++++++.+|.|||+.+. ++++|.++|++++ +++|.++..-....
T Consensus 131 v~fvd~-~~~-~~~~-------l--~~~~tklv~~e~~snpt~~v~---Di~~I~~la~~~~--lvVD~t~~s~~~~~-- 192 (384)
T PRK06434 131 VDYIDT-DRL-NSLD-------F--DPSNYDLIYAESITNPTLKVP---DIKNVSSFCHEND--VIVDATFASPYNQN-- 192 (384)
T ss_pred EEEECC-CCh-hhee-------e--cCCCeeEEEEEcCCCCCceee---cHHHHHHHHHHcC--eEEECCCCCcccCC--
Confidence 999987 321 1111 1 124688999999999999875 5677788888888 45599964221111
Q ss_pred CchHHHHHHHHhcCcEEEEecCcccccccC-ccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCC-
Q psy14428 362 KDAFSLRYFAKEVGQLCLAQSFSKNMGLYG-ERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSD- 439 (583)
Q Consensus 362 ~~~~~~~~~~~~~~~vi~i~S~SK~~~l~G-lRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~- 439 (583)
++ + .+--+++.|.+|.++-+| .=.|.++. .+ +++.++++..........+.+..+.+..-|+.
T Consensus 193 ----pl----~-~gaDivv~S~tK~i~G~~d~~gG~vv~--~~----~~~~~~~~~~~~~~G~~~~~~~A~l~~~gL~tL 257 (384)
T PRK06434 193 ----PL----D-LGADVVIHSATKYISGHSDVVMGVAGT--NN----KSIFNNLVERRKTLGSNPDPIQAYLALRGLKTL 257 (384)
T ss_pred ----ch----h-cCCCEEEeecccccCCCCCceEEEEec--Cc----HHHHHHHHHHHHhcCCCCCHHHHHHHHhCCCcH
Confidence 22 1 234678888999997555 44566655 43 36777776554445555666665655555553
Q ss_pred -hhhhhhhhhHHHHHHHH
Q psy14428 440 -PKLKAQCDETERIMSQL 456 (583)
Q Consensus 440 -~~~~~~~~~~~~~~~~l 456 (583)
..++++.+....+.+.+
T Consensus 258 ~~R~~r~~~~a~~~a~~L 275 (384)
T PRK06434 258 GLRMEKHNKNGMELARFL 275 (384)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 33444444444443333
|
|
| >TIGR00709 dat 2,4-diaminobutyrate 4-transaminases | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.4e-08 Score=109.61 Aligned_cols=265 Identities=12% Similarity=0.052 Sum_probs=153.4
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCC-CC-CCCCCCCCHHHHHHHHHHHhCCCCCCCCCCC-eEEEec
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNL-DH-EYANIGGDAKFCKLAAQLAYGEDFPAFKDNR-LAIVQG 237 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~-~~-~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~-I~i~~t 237 (583)
.+...+|+..|.+....|.- .+.+.+++.+.+.... .. .|.+ .+.+..+|+.+...........+ ++. +
T Consensus 37 dG~~ylD~~~g~~~~~lGh~--~p~i~~ai~~q~~~~~~~~~~~~~----~~~~~~lae~L~~~~p~~~~~~~~~f~--~ 108 (442)
T TIGR00709 37 EGKEYLDFLAGAGTLALGHN--HPNMKQKILDYLQSGLPLHTLDLT----TPLKDAFIEALLNIIPKRKMDYKLQFP--G 108 (442)
T ss_pred CCCEEEEccccHhhhcCCCC--CHHHHHHHHHHHHhccCccccccC----cHHHHHHHHHHHHhCCCcCCCccEEEe--C
Confidence 45567899888877666653 4677777776665421 11 1112 24455555555443211101123 444 6
Q ss_pred CCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhc-C------------CeEEEEecccCCC--CCC----Chh
Q psy14428 238 ISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDS-R------------LNVGAYRYFDNKT--NGL----DFA 298 (583)
Q Consensus 238 ~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~-G------------~~~~~v~~~d~~~--~g~----d~~ 298 (583)
++|++|.+.+..+.+.... ..+|+...-+|.......... | ..+..+|..+... ++. +.+
T Consensus 109 ~sGsEA~e~AlklAr~~tg-r~~Ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (442)
T TIGR00709 109 PSGADAVEAAIKLAKTYTG-RTNVISFSGGFHGMTIGALAVTGNLFAKNAVGMLMPGVQFMPYPHEYRCPFGIGGEAGSN 187 (442)
T ss_pred CCHHHHHHHHHHHHHHhcC-CCeEEEEcCCcCCchHHHHhhcCChhhhccCCCCCCCcEEeCCCccccccccCCchhHHH
Confidence 8899999988666655533 467888888887765433322 1 0123333311100 000 111
Q ss_pred ----hHHHHHHc---C-CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHH
Q psy14428 299 ----GMMEDIKA---M-PERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYF 370 (583)
Q Consensus 299 ----~l~~~l~~---~-~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~ 370 (583)
.+++.++. . .+...+++-|.++|+.....+++.+++|.++|++||+++|.||++.+|...+ .......+
T Consensus 188 ~~~~~~~~~~~~~~~~~~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG---~~~a~~~~ 264 (442)
T TIGR00709 188 ASIEYFENFIEDVESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSG---TMFAFEHA 264 (442)
T ss_pred HHHHHHHHHHHhhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCC---chhHHHHc
Confidence 12333321 1 2334555556666665566899999999999999999999999999997654 23333332
Q ss_pred HHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhC---Chhhhhhhh
Q psy14428 371 AKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILS---DPKLKAQCD 447 (583)
Q Consensus 371 ~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~---~~~~~~~~~ 447 (583)
+-.+.+++ +||.++. |+++|++++ + ++ ++.+........++.+++++.++.+.|+ ++.+..+.+
T Consensus 265 -gv~PDiv~---~gK~l~~-G~Pigav~~--~-----~~-~~~~~~~~~~~T~~gnpla~aaa~a~L~~i~~~~l~~~~~ 331 (442)
T TIGR00709 265 -GIEPDFVV---MSKAVGG-GLPLAVLLI--A-----PE-FDAWQPAGHTGTFRGNQLAMVTGTEALNYWKDDNLAQNAQ 331 (442)
T ss_pred -CCCCcEEE---EcccccC-CcccEEEEE--c-----hH-HhccCCCcCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 22233444 7999994 999999999 6 34 3433222223456778888888877764 334444444
Q ss_pred hHH
Q psy14428 448 ETE 450 (583)
Q Consensus 448 ~~~ 450 (583)
++.
T Consensus 332 ~~g 334 (442)
T TIGR00709 332 ERG 334 (442)
T ss_pred HHH
Confidence 333
|
This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase. |
| >PRK08593 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.1e-08 Score=104.06 Aligned_cols=255 Identities=15% Similarity=0.071 Sum_probs=148.0
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
.+...+|+..|.+....|.- .|.+.+++.+.++... .+.......+....+++.+...... -..++|.+ +++|
T Consensus 40 dG~~ylD~~~g~~~~~lGH~--~p~v~~Ai~~ql~~~~--~~~~~~~~~~~~~~lae~L~~~~p~-~~~~~v~f--~~SG 112 (445)
T PRK08593 40 DGKTYIDLLASASSQNVGHA--PPRVVEAIKAQADKFI--HYTPAYMYHEPLVRLAKKLCELAPG-DFEKRVTF--GLSG 112 (445)
T ss_pred CCCEEEECCccHHhhcCCCC--CHHHHHHHHHHHHhcc--CccccccCCHHHHHHHHHHHHhCCC-CCCCEEEE--CCch
Confidence 34566888777766556643 4677777776665421 1111111123334444444332110 01258899 9999
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHH-hhcC-------------CeEEEEecccCCC--CC-CC-------
Q psy14428 241 SGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFC-TDSR-------------LNVGAYRYFDNKT--NG-LD------- 296 (583)
Q Consensus 241 ~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~-~~~G-------------~~~~~v~~~d~~~--~g-~d------- 296 (583)
++|.+.+..+.+.... ...|+..+-+|.+..... ...+ ..++.+|..+... ++ .+
T Consensus 113 seA~e~AiklAr~~tg-r~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 191 (445)
T PRK08593 113 SDANDGIIKFARAYTG-RPYIISFTNAYHGSTYGSLSMSGISLNMRRKYGPLLPGFVHIPFPDKYRGMYEEPDANFVEEY 191 (445)
T ss_pred HHHHHHHHHHHHHhhC-CCeEEEECCCcCCCcHHHHhhcCCCcccccCCCCCCCCcEEeCCCccccccccCCcHHHHHHH
Confidence 9999987666555543 456887777777653222 1111 1123344311100 00 01
Q ss_pred hhhHHHHHHcC--CCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHh
Q psy14428 297 FAGMMEDIKAM--PERSILFLQTSSHNPTGVD-LSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKE 373 (583)
Q Consensus 297 ~~~l~~~l~~~--~~~~~~i~i~~p~NPTG~~-~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~ 373 (583)
++.+++.+++. .++..++++-..+...|.. .+++-+++|.++|++||+++|.||++..|...+ .......+ +-
T Consensus 192 ~~~~~~~~~~~~~~~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tg~GrtG---~~~a~~~~-gv 267 (445)
T PRK08593 192 LAPLKEMFEKYLPADEVACIVIETIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTG---KWSSISHF-NI 267 (445)
T ss_pred HHHHHHHHHhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCc---hHHHHHhc-CC
Confidence 12333333321 2456666666667777776 789999999999999999999999998885443 11122221 11
Q ss_pred cCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhC
Q psy14428 374 VGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILS 438 (583)
Q Consensus 374 ~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~ 438 (583)
.+. +-+|||.++ .|+++|++++ + +++++.+........++.+++++.++...++
T Consensus 268 ~pD---i~t~gK~l~-~G~p~gav~~--~-----~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~ 321 (445)
T PRK08593 268 TPD---LMSFGKSLA-GGMPMSAIVG--R-----KEIMESLEAPAHLFTTGANPVSCAAALATID 321 (445)
T ss_pred CCC---Eeeeccccc-CCcccEEEEE--c-----HHHHhhhccCCCCCCCCCCHHHHHHHHHHHH
Confidence 222 347899998 8999999999 6 5788877533223355567777776655553
|
|
| >KOG0053|consensus | Back alignment and domain information |
|---|
Probab=99.10 E-value=1e-08 Score=105.35 Aligned_cols=206 Identities=17% Similarity=0.143 Sum_probs=146.4
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhh----cCCeEEE
Q psy14428 209 AKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTD----SRLNVGA 284 (583)
Q Consensus 209 ~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~----~G~~~~~ 284 (583)
..|.+.+++..+. .+.++ .+.|..|+.. .+..++++|+.|+..+..|.....+++. .|++...
T Consensus 80 ~~le~~iaal~ga--------~~~l~--fsSGmaA~~~---al~~L~~~g~~iV~~~~~Y~gT~~~l~~~~~~~gie~~~ 146 (409)
T KOG0053|consen 80 DVLESGIAALEGA--------AHALL--FSSGMAAITV---ALLHLLPAGDHIVATGDVYGGTLRILRKFLPKFGGEGDF 146 (409)
T ss_pred HHHHHHHHHHhCC--------ceEEE--ecccHHHHHH---HHHHhcCCCCcEEEeCCCcccHHHHHHHHHHHhCceeee
Confidence 4566666666543 23666 7777778777 4566788899999999999998777654 4676666
Q ss_pred EecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCch
Q psy14428 285 YRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDA 364 (583)
Q Consensus 285 v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~ 364 (583)
+++. +++.+++++ .++++++++-+|.||+..+.+. ++|.++|++++++||+|+.+....+-+
T Consensus 147 vd~~-------~~~~~~~~i---~~~t~~V~~ESPsNPll~v~DI---~~l~~la~~~g~~vvVDnTf~~p~~~~----- 208 (409)
T KOG0053|consen 147 VDVD-------DLKKILKAI---KENTKAVFLESPSNPLLKVPDI---EKLARLAHKYGFLVVVDNTFGSPYNQD----- 208 (409)
T ss_pred echh-------hHHHHHHhh---ccCceEEEEECCCCCccccccH---HHHHHHHhhCCCEEEEeCCcCcccccC-----
Confidence 6541 566777776 5689999999999999988875 455666779999999999998775432
Q ss_pred HHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCCh--hh
Q psy14428 365 FSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDP--KL 442 (583)
Q Consensus 365 ~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~--~~ 442 (583)
++ ..+--|++.|.+|.+|-.+-=+|=+++. .. +++.++++..+.....+.+++..+...+-+..- .+
T Consensus 209 -pL-----~lGADIV~hSaTKyi~Ghsdvi~G~iv~-n~----~~~~~~l~~~~~~lg~~~~p~~~~ll~Rglktl~lRi 277 (409)
T KOG0053|consen 209 -PL-----PLGADIVVHSATKYIGGHSDVIGGSVVL-NS----EELASRLKFLQEDLGWCEDPFDLFLLSRGLKTLHLRI 277 (409)
T ss_pred -hh-----hcCCCEEEEeeeeeecCCcceeeeEEec-Cc----HHHHHHHHHHHHHhcCCCCHHHHHHHhcCcchhhhhH
Confidence 11 1245689999999996555445544441 22 589999999998888899998888777777643 34
Q ss_pred hhhhhhHHHHHHHH
Q psy14428 443 KAQCDETERIMSQL 456 (583)
Q Consensus 443 ~~~~~~~~~~~~~l 456 (583)
+++.++...+...+
T Consensus 278 ~~~~ena~~~A~~L 291 (409)
T KOG0053|consen 278 NKHSENALKIALLL 291 (409)
T ss_pred HHHHHHHHHHHHHh
Confidence 44444443333333
|
|
| >COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.10 E-value=8.4e-09 Score=107.31 Aligned_cols=213 Identities=16% Similarity=0.126 Sum_probs=151.0
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHH----HhhcCC
Q psy14428 205 IGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRF----CTDSRL 280 (583)
Q Consensus 205 ~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~----~~~~G~ 280 (583)
..-...|.++++.+-+. ++.+. ++.|..|+..+ +..+.++||.|++++..|...... ++..|+
T Consensus 62 nPT~~~lE~~~a~LEg~--------~~~~a--fsSGmaAI~~~---~l~ll~~GD~vl~~~~~YG~t~~~~~~~l~~~gi 128 (396)
T COG0626 62 NPTRDALEEALAELEGG--------EDAFA--FSSGMAAISTA---LLALLKAGDHVLLPDDLYGGTYRLFEKILQKFGV 128 (396)
T ss_pred CccHHHHHHHHHHhhCC--------CcEEE--ecCcHHHHHHH---HHHhcCCCCEEEecCCccchHHHHHHHHHHhcCe
Confidence 34457888888887754 34555 88889999885 445666799999999988876554 456688
Q ss_pred eEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCC
Q psy14428 281 NVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDF 360 (583)
Q Consensus 281 ~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~ 360 (583)
++..++. . +.+..++++. .++++++++-+|.|||-.+.+ +.+|+++|+++++.+|+|+.|..-.+..
T Consensus 129 ~~~~~d~---~----~~~~~~~~~~--~~~tk~v~lEtPsNP~l~v~D---I~~i~~~A~~~g~~vvVDNTfatP~~q~- 195 (396)
T COG0626 129 EVTFVDP---G----DDEALEAAIK--EPNTKLVFLETPSNPLLEVPD---IPAIARLAKAYGALVVVDNTFATPVLQR- 195 (396)
T ss_pred EEEEECC---C----ChHHHHHHhc--ccCceEEEEeCCCCccccccc---HHHHHHHHHhcCCEEEEECCcccccccC-
Confidence 8877643 1 3445555552 258999999999999976665 6777888999999999999997655432
Q ss_pred CCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHh-ccccCCChHHHHHHHHHhCC
Q psy14428 361 DKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIR-GFYSNPPIHGARIVTEILSD 439 (583)
Q Consensus 361 ~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~-~~~~~~s~~~q~~~~~~l~~ 439 (583)
++ ..+--|++.|.+|.++-.+-=+|=+++. ++ +.+.+.+....+ .+....++...+.+.+-++.
T Consensus 196 -----PL-----~~GaDIVvhSaTKyl~GHsDvl~G~v~~-~~----~~~~~~~~~~~~~~~G~~l~p~dA~l~lRGlkT 260 (396)
T COG0626 196 -----PL-----ELGADIVVHSATKYLGGHSDVLGGVVLT-PN----EELYELLFFAQRANTGAVLSPFDAWLLLRGLRT 260 (396)
T ss_pred -----hh-----hcCCCEEEEeccccccCCcceeeeEEec-Ch----HHHHHHHHHHHHhhcCCCCCHHHHHHHHhccch
Confidence 11 2356799999999997655555544441 43 467777655554 47788899999999988885
Q ss_pred --hhhhhhhhhHHHHHHHHHH
Q psy14428 440 --PKLKAQCDETERIMSQLKI 458 (583)
Q Consensus 440 --~~~~~~~~~~~~~~~~l~~ 458 (583)
-.+++|.++...+.+.+..
T Consensus 261 L~~Rm~~~~~nA~~IA~~L~~ 281 (396)
T COG0626 261 LALRMERHNENALKIAEFLAD 281 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 4567777776666655544
|
|
| >PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.9e-08 Score=106.64 Aligned_cols=256 Identities=11% Similarity=0.041 Sum_probs=150.4
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
.+...+|+..|.+....|.- .|.+.+++.+.++......+. .-..+.+..+|+.+.+... -..+++.+ +++|
T Consensus 40 dG~~ylD~~~g~~~~~lGh~--~p~v~~ai~~q~~~~~~~~~~--~~~~~~~~~la~~l~~~~p--~~~~~v~f--~~sG 111 (423)
T PRK05964 40 DGRELIDAISSWWVATHGHN--HPYIDQAIREQLDRLDHVIFA--GFTHEPAERLAQRLVALTP--GGLDHVFF--SDSG 111 (423)
T ss_pred CCCEEEEcchhHHhccCCCC--CHHHHHHHHHHHhhCCCcccc--ccCCHHHHHHHHHHHHhCC--CCCCEEEE--eCCc
Confidence 45677899888777666653 467777777766542111100 0012344555555544321 12368999 9999
Q ss_pred hhHHHHHHHHHHHhC-----CCCCEEEEcCCCChhhHHHHhhc-C------------CeEEEEecccCCCCCCChhhHHH
Q psy14428 241 SGSLRVGTAFLERFY-----PGVKTVYFPTPTWNGHVRFCTDS-R------------LNVGAYRYFDNKTNGLDFAGMME 302 (583)
Q Consensus 241 ~~al~l~~~~l~~~~-----~~gd~Vlv~~P~y~~~~~~~~~~-G------------~~~~~v~~~d~~~~g~d~~~l~~ 302 (583)
++|.+.+..+.+... ....+|+..+-+|.+........ + ..+..+++.+.+....+++.+++
T Consensus 112 seA~e~A~klar~~~~~~~~~~r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~ 191 (423)
T PRK05964 112 SVAVEVALKMALQYWRNRGEPGRSRFLSLRGGYHGDTIGTMSVGDRGGMHALYTPLLFEQVTAPFPPDGYEQATLDALEA 191 (423)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHHHHhcCCCccccccccCcCCCCEEeCCCcchhHHHHHHHHHH
Confidence 999998766655441 22357888888887643322211 1 01223333111000012667777
Q ss_pred HHHcCCCCcEEEEeCC-CCCCCCCCC-CHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEE
Q psy14428 303 DIKAMPERSILFLQTS-SHNPTGVDL-SEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLA 380 (583)
Q Consensus 303 ~l~~~~~~~~~i~i~~-p~NPTG~~~-s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i 380 (583)
.+.+..++..++++-. .+...|... +.+.+++|.++|++||+++|.||++.+|...+ ....... .+...-+
T Consensus 192 ~l~~~~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G---~~~a~~~----~~v~pDi 264 (423)
T PRK05964 192 LLEKHAGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTG---TLFACEQ----AGVSPDI 264 (423)
T ss_pred HHHhCCCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCc---chhHHHh----cCCCCCe
Confidence 7754444444554432 477788665 89999999999999999999999998885543 1111111 1222223
Q ss_pred ecCcccccccCccceEEEEEcCCchhHHHHHHHHHHH------HhccccCCChHHHHHHHHHhC
Q psy14428 381 QSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKIL------IRGFYSNPPIHGARIVTEILS 438 (583)
Q Consensus 381 ~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~------~~~~~~~~s~~~q~~~~~~l~ 438 (583)
-++||.++..++++|++++ . +++++.+... .....++.++++..++.+.++
T Consensus 265 ~~~~K~l~gG~~p~~av~~--~-----~~i~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~ 321 (423)
T PRK05964 265 MCLSKGLTGGYLPLAATLC--T-----AEIFEAFYSDDRAKAFMHSPSYTANPLACAAANASLD 321 (423)
T ss_pred eeeehhhhcCcccceEEEE--c-----HHHHHhhhcCCcccccccCCCCCcCHHHHHHHHHHHH
Confidence 4789999844489999888 5 5788877532 111223456777666655554
|
|
| >TIGR00474 selA seryl-tRNA(sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.7e-08 Score=106.68 Aligned_cols=206 Identities=16% Similarity=0.119 Sum_probs=132.4
Q ss_pred CCCCCCCChHHHHHHHHHhccCCCCCCCCC---CC--CHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHH
Q psy14428 176 EDGKPYVLPSVKEAERRIYEKNLDHEYANI---GG--DAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAF 250 (583)
Q Consensus 176 ~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~---~G--~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~ 250 (583)
+.+.+..++.+.+++.+.........|.-. .| +..+++.+|++.+.. ..++ +++++.|+.++
T Consensus 87 Nlg~s~l~~~vieAv~~~~~~y~~l~~~l~~g~~g~r~~~le~~lA~l~gae--------~alv--v~sg~aAi~l~--- 153 (454)
T TIGR00474 87 NLGRAPLAEEAIEAVTDAARGYSNLEYDLETGKRGSRYSHVEGLLCELTGAE--------DALV--VNNNAAAVLLA--- 153 (454)
T ss_pred cCCCCCCCHHHHHHHHHHHhcccchhccccccccchHHHHHHHHHHHHhCCC--------cEEE--ECCHHHHHHHH---
Confidence 344444668888888777754222223211 11 378889999988642 2345 66677788764
Q ss_pred HHHhCCCCCEEEEcCCCChh------hHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCC-
Q psy14428 251 LERFYPGVKTVYFPTPTWNG------HVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPT- 323 (583)
Q Consensus 251 l~~~~~~gd~Vlv~~P~y~~------~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPT- 323 (583)
+..+ .+||+|++.+-.+.. ....++..|++++.++. +. ..+++++++++ .++++++++.+++||+
T Consensus 154 l~~l-~~GdeVIvs~~e~v~~ggs~~i~~~~~~~G~~~~~v~~-~~---~~~l~dle~aI---~~~T~lv~~~h~sN~~~ 225 (454)
T TIGR00474 154 LNTL-AKGKEVIVSRGELVEIGGSFRIPDVMEQSGAKLVEVGT-TN---RTHLKDYEDAI---TENTALLLKVHTSNYRI 225 (454)
T ss_pred HHHh-CCcCEEEECCChhhhhcchhhHHHHHHHcCCEEEEeCC-CC---CCCHHHHHHhc---CcCCEEEEEEccCcccc
Confidence 3444 459999999865322 23456778999998876 22 23788888877 6789999999999996
Q ss_pred -CC--CCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCC---CCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEE
Q psy14428 324 -GV--DLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSG---DFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTF 397 (583)
Q Consensus 324 -G~--~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~---~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~l 397 (583)
|. ..+ +++|+++|+++|+++|+|...+-+... +. ...+.+....+ .+--+++.|.+|.++-| ..|++
T Consensus 226 ~G~~~~~d---l~~I~~la~~~g~~vivD~~sG~l~~~~~~gl-~~~p~~~~~~~-~GaDiv~fSg~K~LgGp--~~G~i 298 (454)
T TIGR00474 226 VGFTEEVS---IAELVALGREHGLPVMEDLGSGSLVDLSRYGL-PDEPTVQEVIA-AGVDLVTFSGDKLLGGP--QAGII 298 (454)
T ss_pred cCCCCCCC---HHHHHHHHHHcCCeEEEECCCcccccchhccC-CCCcccccHhH-cCCCEEEecCccccCCC--eEEEE
Confidence 52 344 677799999999999999864333110 00 00111222222 23458899999998645 58999
Q ss_pred EEEcCCchhHHHHHHHHHH
Q psy14428 398 SVLTPTSDETERIMSQLKI 416 (583)
Q Consensus 398 v~~~p~~~~~~~li~~l~~ 416 (583)
++ . +++++++.+
T Consensus 299 ~g--~-----~~~i~~l~~ 310 (454)
T TIGR00474 299 VG--K-----KELIERLKK 310 (454)
T ss_pred EE--C-----HHHHHhhhh
Confidence 98 6 467766553
|
In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on. |
| >PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.1e-08 Score=104.60 Aligned_cols=200 Identities=17% Similarity=0.079 Sum_probs=140.1
Q ss_pred CChHHHHHHHHHhccCCC----CCCCC----CCCCHHHHHHHHHHHhCCCCCCCCC-CCeEEEecCCchhHHHHHHHHHH
Q psy14428 182 VLPSVKEAERRIYEKNLD----HEYAN----IGGDAKFCKLAAQLAYGEDFPAFKD-NRLAIVQGISGSGSLRVGTAFLE 252 (583)
Q Consensus 182 ~~~~v~~a~~~~~~~~~~----~~Y~~----~~G~~~Lr~aia~~~~~~~g~~~~~-~~I~i~~t~G~~~al~l~~~~l~ 252 (583)
.|+.+.+++.+...+... ..+.. ..-..+.|+.++++++ .++ ++|++ ++|++.++..+...+.
T Consensus 11 ~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~lg------~~~~~~v~~--~~~~t~a~~~~~~~l~ 82 (371)
T PF00266_consen 11 MPKSVLEAISDYLRNFYANPHSGVSHRSREFAEILEEAREALAKLLG------APPDEEVVF--TSNGTEALNAVASSLL 82 (371)
T ss_dssp -BHHHHHHHHHHHHHSGSSTSTSSSTTSHHHHHHHHHHHHHHHHHHT------SSTTEEEEE--ESSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhhcCcccccchhhhhhHHHHHHHHHHHHhcC------Ccccccccc--ccccchhhhhhhhccc
Confidence 567788877776543111 11111 1223578888999886 345 78999 9999999998643332
Q ss_pred HhCCCCCEEEEcCCCChhhH----HHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCC
Q psy14428 253 RFYPGVKTVYFPTPTWNGHV----RFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLS 328 (583)
Q Consensus 253 ~~~~~gd~Vlv~~P~y~~~~----~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s 328 (583)
.-.++||+|++.+-.|+... .+.+..|+++..++. +. +..+|++.+++.+ .+++++++++.-+|-||...+
T Consensus 83 ~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~v~~i~~-~~-~~~~~~~~~~~~l---~~~~~lv~~~~~~~~tG~~~p 157 (371)
T PF00266_consen 83 NPLKPGDEVLVTSNEHPSNRYPWEEIAKRKGAEVRVIPA-DP-GGSLDLEDLEEAL---NPDTRLVSISHVENSTGVRNP 157 (371)
T ss_dssp HHGTTTCEEEEEESSHHHHHHHHHHHHHHTTEEEEEEEE-GT-TSSCSHHHHHHHH---HTTESEEEEESBETTTTBBSS
T ss_pred cccccccccccccccccccccccccccccchhhhccccc-cc-cchhhhhhhhhhh---ccccceEEeecccccccEEee
Confidence 21456999999988877665 344467999999988 44 3578999999999 578999999999999999988
Q ss_pred HHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHH
Q psy14428 329 EDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETE 408 (583)
Q Consensus 329 ~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~ 408 (583)
+++|.++|++++++++.|-+.+--..+ +. .+..+--+++.|.-|.+|-+| +|++++ . +
T Consensus 158 ---i~~I~~~~~~~~~~~~vD~~~~~g~~~--------id--~~~~~~D~~~~s~~Kl~gp~G--~g~l~v--~-----~ 215 (371)
T PF00266_consen 158 ---IEEIAKLAHEYGALLVVDAAQSAGCVP--------ID--LDELGADFLVFSSHKLGGPPG--LGFLYV--R-----P 215 (371)
T ss_dssp ---HHHHHHHHHHTTSEEEEE-TTTTTTSS------------TTTTTESEEEEESTSTTSSST--EEEEEE--E-----H
T ss_pred ---eceehhhhhccCCceeEechhcccccc--------cc--ccccccceeeecccccCCCCc--hhhhee--h-----h
Confidence 556688899999999999997643321 10 122233478889999555555 699999 5 5
Q ss_pred HHHHHHHH
Q psy14428 409 RIMSQLKI 416 (583)
Q Consensus 409 ~li~~l~~ 416 (583)
++++++..
T Consensus 216 ~~~~~~~p 223 (371)
T PF00266_consen 216 EAIERLRP 223 (371)
T ss_dssp HHHHHHHT
T ss_pred hhhhcccc
Confidence 67777743
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B .... |
| >PLN02994 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.4e-10 Score=102.29 Aligned_cols=65 Identities=14% Similarity=0.166 Sum_probs=58.6
Q ss_pred CCCCCCCCHHHHHHHHHHHhCCCC--CCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChh
Q psy14428 201 EYANIGGDAKFCKLAAQLAYGEDF--PAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNG 270 (583)
Q Consensus 201 ~Y~~~~G~~~Lr~aia~~~~~~~g--~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~ 270 (583)
.|.+..|.++||+++|+|+.+.+| +.+++++|++ |+|++++++++ +..++++||.|++++|+|+.
T Consensus 87 ~Y~~~~G~~~lR~AiA~~l~~~~g~~v~~~pd~Ivv--t~Ga~~al~~l---~~~l~dpGD~VlVp~P~Y~~ 153 (153)
T PLN02994 87 LFQDYHGLANFRKAIANFMAEARGGRVKFDADMIVL--SAGATAANEII---MFCIADPGDAFLVPTPYYAA 153 (153)
T ss_pred cCCCCCCcHHHHHHHHHHHHHHhCCCCccchhheEE--cCCHHHHHHHH---HHHHcCCCCEEEEeCCCCCC
Confidence 399999999999999999999888 7789999999 99999999985 55677889999999999973
|
|
| >PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.6e-09 Score=109.49 Aligned_cols=191 Identities=16% Similarity=0.079 Sum_probs=129.8
Q ss_pred hHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEE
Q psy14428 184 PSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYF 263 (583)
Q Consensus 184 ~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv 263 (583)
+.+.+++.+.... ...|....-..+|.+.+++.++. +..++ +++|+.|-.++ ++.++.|++.|++
T Consensus 9 ~~m~~a~~~a~~g--d~~Yg~D~~~~~l~~~i~~l~g~--------e~a~f--~~sGT~An~~a---l~~~~~~~~~vi~ 73 (290)
T PF01212_consen 9 PAMLEAMAAANVG--DDAYGEDPTTARLEERIAELFGK--------EAALF--VPSGTMANQLA---LRAHLRPGESVIC 73 (290)
T ss_dssp HHEEHHHHHTTSB---CCTTSSHHHHHHHHHHHHHHTS--------SEEEE--ESSHHHHHHHH---HHHHHHTTEEEEE
T ss_pred HHHHHHHHccccC--CcccCCChhHHHHHHHHHHHcCC--------CEEEE--eCCCChHHHHH---HHHHHhcCCceec
Confidence 5666666444332 22688888889999999999875 34456 78899898885 4445567999999
Q ss_pred cCCCChh---hHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcC---CCCcEEEEeCCCCCCC-CCCCCHHHHHHHH
Q psy14428 264 PTPTWNG---HVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAM---PERSILFLQTSSHNPT-GVDLSEDQWRQLA 336 (583)
Q Consensus 264 ~~P~y~~---~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~---~~~~~~i~i~~p~NPT-G~~~s~~~~~~l~ 336 (583)
..++... ........|+++++++. + ++..++++.+++.++.. ..+++++.+.+|+|-. |.++|.+++++|.
T Consensus 74 ~~~aHi~~~E~ga~~~~~G~~~~~l~~-~-~~G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~ 151 (290)
T PF01212_consen 74 ADTAHIHFDETGAIEELSGAKLIPLPS-D-DDGKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAIS 151 (290)
T ss_dssp ETTEHHHHSSTTHHHHHTTCEEEEEBE-C-TGTBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHH
T ss_pred cccceeeeeccchhhHhcCcEEEECCC-c-ccCCCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHH
Confidence 9997432 22333558999999987 2 22678999999999763 3578999999999986 7899999999999
Q ss_pred HHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEE
Q psy14428 337 VVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSV 399 (583)
Q Consensus 337 ~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~ 399 (583)
++|+++|+.+..|-+-..-.-. ....+++.+.. . --++.-|+||..++++ |.+++
T Consensus 152 ~~a~~~gl~lhmDGARl~~a~~---~~~~~~~e~~~-~-~D~v~~~~tK~~g~~~---Gavl~ 206 (290)
T PF01212_consen 152 ELAREHGLPLHMDGARLANAAA---ALGVSLAEIAA-G-ADSVSFGGTKNGGAPG---GAVLA 206 (290)
T ss_dssp HHHHHHT-EEEEEETTHHHHHC---HHHHHHHHHHT-T-SSEEEEETTSTT-SSS---EEEEE
T ss_pred HHHHhCceEEEEehhhHHHhhh---cccccHHHHhh-h-CCEEEEEEEccccccc---ceEEE
Confidence 9999999999999983211100 01123444332 2 2244557999987666 76666
|
It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B .... |
| >COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.5e-08 Score=98.44 Aligned_cols=268 Identities=12% Similarity=-0.004 Sum_probs=161.0
Q ss_pred CChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEE
Q psy14428 182 VLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTV 261 (583)
Q Consensus 182 ~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~V 261 (583)
+-+.+.+++.+... ...+..|..+.-+++.+++.+..+. +.+++ +++||++-.++ ++..+.||+.|
T Consensus 12 ~~~~m~eam~~a~~-----~~~~~YG~D~~~~~~e~~~ae~~g~----~a~~F--v~sGT~aN~la---l~~~~~~~~~v 77 (342)
T COG2008 12 PTPEMREALAAANA-----VGDDVYGEDPTTNALEQRIAELFGK----EAALF--VPSGTQANQLA---LAAHCQPGESV 77 (342)
T ss_pred CCHHHHHHHHhccc-----cCCCCCCCCHHHHHHHHHHHHHhCC----ceEEE--ecCccHHHHHH---HHHhcCCCCeE
Confidence 45778888766542 2233445555566665555554332 67888 88999999884 56677889999
Q ss_pred EEcCCCChhhHH--HHhhcCCeEEEEecccCCCCCCChhhHHHHHHcC---CCCcEEEEeCCCCCCCCCCCCHHHHHHHH
Q psy14428 262 YFPTPTWNGHVR--FCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAM---PERSILFLQTSSHNPTGVDLSEDQWRQLA 336 (583)
Q Consensus 262 lv~~P~y~~~~~--~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~---~~~~~~i~i~~p~NPTG~~~s~~~~~~l~ 336 (583)
++..-+...... ..+..+ .+.+++..+..+..++++.++..+... ..++.++++-|.+|--|+++|.+++++|.
T Consensus 78 i~~~~aHi~~~E~Ga~~~~~-~~~~~~~~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~~~te~GtVy~l~el~~i~ 156 (342)
T COG2008 78 ICHETAHIYTDECGAPEFFG-GGQKLPIVPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTATEGGTVYPLDELEAIS 156 (342)
T ss_pred EEeccccceecccCcHHHHc-CCceeccCCCCCCCcCHHHHHHhhcCCCcccCCCceEEEeeccCCCceecCHHHHHHHH
Confidence 988766332211 122222 122333323345789999999988642 23444555555555779999999999999
Q ss_pred HHHHhcCeEEEEeccCC--CCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHH
Q psy14428 337 VVVKQRHLYPFFDMAYL--GLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQL 414 (583)
Q Consensus 337 ~~a~~~~i~iI~De~Y~--~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l 414 (583)
++|+++++.|-.|-+-. -+...+ ++...+.. +-.++ .-++||..+.|+ |.+++ -| .++++++
T Consensus 157 ~~~k~~~l~LHmDGAR~~nA~valg-----~~~~~~~~-~~D~v-~~~~tK~g~~~~---gAiv~--gn----~~~~~~a 220 (342)
T COG2008 157 AVCKEHGLPLHMDGARLANALVALG-----VALKTIKS-YVDSV-SFCLTKGGGAPV---GAIVF--GN----RDFAKRA 220 (342)
T ss_pred HHHHHhCCceeechHHHHHHHHHcC-----CCHHHHHh-hCCEE-EEecccCCccee---eeEEE--cC----HHHHHHH
Confidence 99999999999998731 222222 12333322 22233 445799887655 88888 55 4788888
Q ss_pred HHHHhccccCC--ChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHh--hccC-CCccchhhHHHHhcC
Q psy14428 415 KILIRGFYSNP--PIHGARIVTEILSDPKLKAQCDETERIMSQLKILIR--GFYS-NPPIHGARIVTEILS 480 (583)
Q Consensus 415 ~~~~~~~~~~~--s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r--~~~~-~~p~~g~~i~~~~l~ 480 (583)
...+.+..... +.+.......+|+++-+...-.........+.+.++ .+++ .+|...+.+++.+.+
T Consensus 221 ~~~rK~~Ggl~~k~r~laA~~~~~l~~~~~~~~~~Han~mA~~La~~~~~~~G~~~~~~~~tN~vf~~l~~ 291 (342)
T COG2008 221 RRWRKRAGGLMRKARFLAAQGLYALEDDVWRLAADHANAMAARLAEGLEAKPGVKLAFPVETNMVFVRLPE 291 (342)
T ss_pred HHHHHHhcccHhhhhHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhhhhcCCceeccCCcccEEEEECCh
Confidence 87765554333 344444455567766443333333333334444444 2344 455677766665544
|
|
| >PRK03715 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.2e-07 Score=100.66 Aligned_cols=217 Identities=13% Similarity=0.037 Sum_probs=133.4
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
.+...+|+..|.+....|.- .|.+.+++.+.++.. ...+ .....++...+|+.+.+.. ..+++++ +++|
T Consensus 34 dG~~~lD~~sg~~~~~lGh~--~p~v~~a~~~q~~~~-~~~~--~~~~~~~~~~la~~l~~~~----~~~~v~f--~~SG 102 (395)
T PRK03715 34 NGKRYLDFIQGWAVNCLGHC--NPGMVEALAAQAEKL-INPS--PAFYNEPMAKLAGLLTQHS----CFDKVFF--ANSG 102 (395)
T ss_pred CCCEEEECCcChhhccCCCC--CHHHHHHHHHHHHhc-cccc--ccccCHHHHHHHHHHhhcc----CCCEEEE--eCCc
Confidence 35677899887776666654 367777777666431 1111 1233567788888887542 2368999 9999
Q ss_pred hhHHHHHHHHHHHhC---CCC-CEEEEcCCCChhhHH-HHhhcCCeEEE---EecccC-C-CCCCChhhHHHHHHcCCCC
Q psy14428 241 SGSLRVGTAFLERFY---PGV-KTVYFPTPTWNGHVR-FCTDSRLNVGA---YRYFDN-K-TNGLDFAGMMEDIKAMPER 310 (583)
Q Consensus 241 ~~al~l~~~~l~~~~---~~g-d~Vlv~~P~y~~~~~-~~~~~G~~~~~---v~~~d~-~-~~g~d~~~l~~~l~~~~~~ 310 (583)
++|.+.+..+.+... .+| +.|+..+.+|..... .+...|..... .|.... . ..--|++.+++.+ .++
T Consensus 103 seA~e~Aik~ar~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l---~~~ 179 (395)
T PRK03715 103 AEANEGAIKLARKWGRKHKNGAYEIITFDHSFHGRTLATMSASGKPGWDTIFAPQVPGFPKAELNDIASVEKLI---TDK 179 (395)
T ss_pred HHHHHHHHHHHHHHhhccCCCCcEEEEECCCcCCChHHHHhhcCCcccccCCCCCCCCceeeCCchHHHHHHHc---CCC
Confidence 999998766655431 112 578888888876543 22323322111 111000 0 0012567777766 345
Q ss_pred cEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccc
Q psy14428 311 SILFLQTSSHNPTGVD-LSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGL 389 (583)
Q Consensus 311 ~~~i~i~~p~NPTG~~-~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l 389 (583)
+.++++...++..|.. .+++.+++|.++|+++|+++|.||++..|...+ .......+ +-... +.+|||.++
T Consensus 180 ~aavi~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~GRtG---~~~a~~~~-gv~PD---i~t~gK~lg- 251 (395)
T PRK03715 180 TVAVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTG---TLFAYELS-GIEPD---IMTLGKGIG- 251 (395)
T ss_pred ceEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCc---chhhHhhc-CCCCc---eeeehhhhh-
Confidence 5566555444444544 378999999999999999999999999874433 11111221 11122 457899998
Q ss_pred cCccceEEEE
Q psy14428 390 YGERVGTFSV 399 (583)
Q Consensus 390 ~GlRiG~lv~ 399 (583)
.|+-+|.+++
T Consensus 252 ~G~p~~av~~ 261 (395)
T PRK03715 252 GGVPLAALLA 261 (395)
T ss_pred CCcceEEEEE
Confidence 7899999988
|
|
| >PRK06541 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.3e-07 Score=99.24 Aligned_cols=254 Identities=12% Similarity=0.045 Sum_probs=144.9
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
.+...+|+..|.+....|.- .|.+.+++.+.+.... .+.......+.+..+|+.+.+... -..+++.. +++|
T Consensus 50 dG~~ylD~~~g~~~~~lGh~--~p~v~~Av~~q~~~~~--~~~~~~~~~~~~~~la~~l~~~~p--~~~~~v~f--~~sG 121 (460)
T PRK06541 50 RGKRYLDGLAGLFVVQVGHG--RAELAEAAAKQAGTLA--FFPLWSYAHPPAIELAERLAALAP--GDLNRVFF--TTGG 121 (460)
T ss_pred CCCEEEECCccHHhccCCCC--CHHHHHHHHHHHhhCc--CccccccCCHHHHHHHHHHHHhCC--CCcCEEEE--cCCc
Confidence 45667898888776666653 4677777777665411 011111112333445555443211 12368999 9999
Q ss_pred hhHHHHHHHHHHHh---C--CCCCEEEEcCCCChhhHHHHhh-cC------------CeEEEEecccCCC---CCCC---
Q psy14428 241 SGSLRVGTAFLERF---Y--PGVKTVYFPTPTWNGHVRFCTD-SR------------LNVGAYRYFDNKT---NGLD--- 296 (583)
Q Consensus 241 ~~al~l~~~~l~~~---~--~~gd~Vlv~~P~y~~~~~~~~~-~G------------~~~~~v~~~d~~~---~g~d--- 296 (583)
++|.+.+..+.+.. . +...+|+...-+|.+....... .| ..+..+|..+... ++-+
T Consensus 122 seAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 201 (460)
T PRK06541 122 SEAVESAWKLAKQYFKLTGKPGKHKVISRAIAYHGTTQGALAITGLPAFKAPFEPLVPGGFRVPNTNFYRAPELGDDPEA 201 (460)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCccEEEEEcCcccCcchhhhcCcCChhhccccCCCCCCcEEeCCCccccccccCCCHHH
Confidence 99999876655543 1 1135777777776655322111 11 0122233211000 1112
Q ss_pred -----hhhHHHHHHcCCCCcEEEEeCCC-CCCCCCCCC-HHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHH
Q psy14428 297 -----FAGMMEDIKAMPERSILFLQTSS-HNPTGVDLS-EDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRY 369 (583)
Q Consensus 297 -----~~~l~~~l~~~~~~~~~i~i~~p-~NPTG~~~s-~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~ 369 (583)
++.+++.+.+..++..+.++..| +++.|.+.. .+-+++|.++|+++|+++|.||++..|.--+ .......
T Consensus 202 ~~~~~~~~l~~~l~~~~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tGfGR~G---~~~a~~~ 278 (460)
T PRK06541 202 FGRWAADRIEEAIEFEGPDTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRLG---EMFGCER 278 (460)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCc---hhhhhhh
Confidence 24566666433234455555566 999998765 8889999999999999999999998874222 1111111
Q ss_pred HHHhcCcEEEEecCcccccccCc-cceEEEEEcCCchhHHHHHHHHHHHHh----ccccCCChHHHHHHHHHh
Q psy14428 370 FAKEVGQLCLAQSFSKNMGLYGE-RVGTFSVLTPTSDETERIMSQLKILIR----GFYSNPPIHGARIVTEIL 437 (583)
Q Consensus 370 ~~~~~~~vi~i~S~SK~~~l~Gl-RiG~lv~~~p~~~~~~~li~~l~~~~~----~~~~~~s~~~q~~~~~~l 437 (583)
+ +-.+.++ +|||.++ .|+ ++|++++ + +++++.+..... ...++.++++..++.+.+
T Consensus 279 ~-gv~PDiv---t~gK~l~-~G~~pigav~~--~-----~~i~~~~~~~~~~~~~~~T~~gnp~~~aaala~l 339 (460)
T PRK06541 279 F-GYVPDII---TCAKGIT-SGYSPLGAMIA--S-----DRLFEPFLDGPTMFLHGYTFGGHPVSAAVALANL 339 (460)
T ss_pred c-CCCCCEE---Eeccccc-CCccceeEEEE--c-----HHHHHHhhcCCCccccCCCCCCCHHHHHHHHHHH
Confidence 1 1122333 5899998 897 9999999 6 577777754221 123344556655554443
|
|
| >PRK02769 histidine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.7e-07 Score=98.75 Aligned_cols=232 Identities=13% Similarity=0.095 Sum_probs=148.4
Q ss_pred CHHHHHHHHHHHhCCCCCCCCCCCe--EEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEE
Q psy14428 208 DAKFCKLAAQLAYGEDFPAFKDNRL--AIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAY 285 (583)
Q Consensus 208 ~~~Lr~aia~~~~~~~g~~~~~~~I--~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v 285 (583)
..++.+.+.+++.+..|. +++++ .+ |+||+++...+....+.+.+ +++|++++-........++..|.+...|
T Consensus 63 ~~~~e~~~~~~~a~l~g~--~~~~~~G~~--TsGgTean~~a~~~ar~~~~-~~~ii~s~~~H~Sv~ka~~~lg~~~~~V 137 (380)
T PRK02769 63 SFDFERDVMNFFAELFKI--PFNESWGYI--TNGGTEGNLYGCYLARELFP-DGTLYYSKDTHYSVSKIARLLRIKSRVI 137 (380)
T ss_pred hHHHHHHHHHHHHHHhCC--CCCCCCEEE--ecChHHHHHHHHHHHHHhCC-CcEEEeCCCceehHHHHHHHcCCCCcee
Confidence 344544444444443333 34444 77 99999997654222233334 7899999888888888889999998889
Q ss_pred ecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcC---eEEEEeccCCCCCCCCCCC
Q psy14428 286 RYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRH---LYPFFDMAYLGLTSGDFDK 362 (583)
Q Consensus 286 ~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~---i~iI~De~Y~~l~~~~~~~ 362 (583)
+. ++ ++.+|++.+++.+.....++.+++++..+|+||.+-+.++ |.++|++++ +++.+|-+++.+...-. .
T Consensus 138 ~~-~~-~g~id~~~L~~~i~~~~~~t~lvv~t~gtt~tG~idpi~~---I~~i~~~~g~~~~~lHVDaA~gg~~~p~~-~ 211 (380)
T PRK02769 138 TS-LP-NGEIDYDDLISKIKENKNQPPIIFANIGTTMTGAIDNIKE---IQEILKKIGIDDYYIHADAALSGMILPFV-N 211 (380)
T ss_pred cc-CC-CCcCcHHHHHHHHHhCCCCcEEEEEEeCCCCCcccCCHHH---HHHHHHHhCCCceEEEEEecccceeeccc-C
Confidence 88 54 4679999999999765556889999999999999988554 567788887 79999999987654311 0
Q ss_pred chHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHh---ccc-------cCCChHHHHH
Q psy14428 363 DAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIR---GFY-------SNPPIHGARI 432 (583)
Q Consensus 363 ~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~---~~~-------~~~s~~~q~~ 432 (583)
..+.+ .+ .. +--.+..|.-|.++ .-.-+|.++. .+ +.++.+..... ... .+.+.+..++
T Consensus 212 ~~~~~-d~-~~-~vDsis~s~HK~~~-~P~g~G~l~~--r~-----~~~~~~~~~~~yl~~~d~t~~GSR~g~~~l~lw~ 280 (380)
T PRK02769 212 NPPPF-SF-AD-GIDSIAISGHKFIG-SPMPCGIVLA--KK-----KYVERISVDVDYIGSRDQTISGSRNGHTALLLWA 280 (380)
T ss_pred ccccC-Cc-cC-CCCEEEECCcccCC-CCCCcEEEEE--eh-----hhhhhcccCccccCCCCCCccCCCCcHHHHHHHH
Confidence 10011 11 11 22345677889776 3456899988 52 34444421111 000 1223566667
Q ss_pred HHHHhCChhhhhhhhhHHHHHHHHHHHHh
Q psy14428 433 VTEILSDPKLKAQCDETERIMSQLKILIR 461 (583)
Q Consensus 433 ~~~~l~~~~~~~~~~~~~~~~~~l~~~~r 461 (583)
+...+....+++..++..+..+.+.+.++
T Consensus 281 aL~~lg~~G~~~~~~~~~~la~~l~~~L~ 309 (380)
T PRK02769 281 AIRSLGSKGLRQRVQHCLDMAQYAVDRLQ 309 (380)
T ss_pred HHHHHCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777776777666666555555544443
|
|
| >KOG1549|consensus | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.2e-08 Score=101.18 Aligned_cols=188 Identities=13% Similarity=0.040 Sum_probs=135.0
Q ss_pred CChHHHHHHHHHhcc----CCC--CCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhC
Q psy14428 182 VLPSVKEAERRIYEK----NLD--HEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFY 255 (583)
Q Consensus 182 ~~~~v~~a~~~~~~~----~~~--~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~ 255 (583)
.++.|.+++...... +.. ..+....+.+.-|+.+|++++ .++.+|++ |+|+|+++.++..-. -.
T Consensus 55 ~~~~Vldam~~~~~~~~~nPh~~~y~w~~~~~~E~aR~~VAklIn------Ad~~dIiF--ts~ATEs~Nlvl~~v--~~ 124 (428)
T KOG1549|consen 55 MDPRVLDAMLPYLLEYLGNPHSRSYGWKAEDAVEAAREQVAKLIN------ADPSDIVF--TSGATESNNLVLKGV--AR 124 (428)
T ss_pred CCHHHHHHHHHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhC------CCCCcEEE--eCCchHHHHHHHHHh--hc
Confidence 446777776655543 211 122334457889999999987 45677999 999999999963322 22
Q ss_pred CCCC----EEEEcCCCChhh---HHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCC
Q psy14428 256 PGVK----TVYFPTPTWNGH---VRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLS 328 (583)
Q Consensus 256 ~~gd----~Vlv~~P~y~~~---~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s 328 (583)
..+| .|++..-.|+.. ....+..|++++.+|+ + ++.-+|.+.+++.+ .++++++.+-.-+|=+|++++
T Consensus 125 ~~~~~~~k~iitl~~eH~~v~~s~~~l~~~g~~Vt~lpv-~-~~~~~d~~~~~~~i---~~~T~lv~I~~Vnn~~gv~~P 199 (428)
T KOG1549|consen 125 FFGDKTKKHIITLQTEHPCVLDSCRALQEEGLEVTYLPV-E-DSGLVDISKLREAI---RSKTRLVSIMHVNNEIGVLQP 199 (428)
T ss_pred cccccccceEEEecccCcchhHHHHHHHhcCeEEEEecc-C-ccccccHHHHHHhc---CCCceEEEEEecccCcccccc
Confidence 2355 777766555554 4556677999999999 4 44667899998888 789999999999999999998
Q ss_pred HHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEE
Q psy14428 329 EDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSV 399 (583)
Q Consensus 329 ~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~ 399 (583)
+++|.++|+++++.++.|-+.+-=. -+.-++. -+--++.-|.-|.||.|| +|++.+
T Consensus 200 ---v~EI~~icr~~~v~v~~DaAQavG~------i~vDV~e----ln~D~~s~s~HK~ygp~~--iGaLYv 255 (428)
T KOG1549|consen 200 ---VKEIVKICREEGVQVHVDAAQAVGK------IPVDVQE----LNADFLSISAHKIYGPPG--IGALYV 255 (428)
T ss_pred ---HHHHHHHhCcCCcEEEeehhhhcCC------ccccHHH----cCchheeeecccccCCCc--ceEEEE
Confidence 5566889999999999999863211 1112222 233456677889999999 999999
|
|
| >TIGR01814 kynureninase kynureninase | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.6e-07 Score=100.42 Aligned_cols=146 Identities=12% Similarity=0.079 Sum_probs=104.4
Q ss_pred CCCCCCeEEEecCCchhHHHHHHHHHHHhCCCC---CEEEEcCCCChhhHH----HHhhcCCeE----EEEecccCCCCC
Q psy14428 226 AFKDNRLAIVQGISGSGSLRVGTAFLERFYPGV---KTVYFPTPTWNGHVR----FCTDSRLNV----GAYRYFDNKTNG 294 (583)
Q Consensus 226 ~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~g---d~Vlv~~P~y~~~~~----~~~~~G~~~----~~v~~~d~~~~g 294 (583)
..++++|++ |+|+++++.++. ..+..++ +.|++.+..|+.-.. .++..|+++ +.++. + +++.
T Consensus 83 g~~~~~v~~--~~~~t~~l~~~~---~~~~~~~~~~~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~-~-~~g~ 155 (406)
T TIGR01814 83 GAKEDEVVV--MNTLTINLHLLL---ASFYKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLTVEESMVQIEP-R-EEET 155 (406)
T ss_pred CCCCCcEEE--eCCchHHHHHHH---HHhcCCcCCccEEEecCCCCChHHHHHHHHHHhcCCCcccceEEecc-C-CCCc
Confidence 357899999 999999999853 3333333 368888888887332 345668887 45554 2 2356
Q ss_pred CChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhc
Q psy14428 295 LDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEV 374 (583)
Q Consensus 295 ~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~ 374 (583)
++++.+++.++...+++++++++.++|.||..++ +++|.++|+++|+++++|++..--..+ ..+ +..
T Consensus 156 ~~~~~l~~~~~~~~~~t~lv~~~~v~~~tG~~~~---~~~i~~~~~~~g~~~~vD~aq~~G~~~------id~----~~~ 222 (406)
T TIGR01814 156 LRLEDILDTIEKNGDDIAVILLSGVQYYTGQLFD---MAAITRAAHAKGALVGFDLAHAVGNVP------LDL----HDW 222 (406)
T ss_pred cCHHHHHHHHHhcCCCeEEEEEeccccccceecC---HHHHHHHHHHcCCEEEEEcccccCCcc------ccc----ccC
Confidence 7888888888655678999999999999999997 666688899999999999997542211 011 123
Q ss_pred CcEEEEecCcccc-cccC
Q psy14428 375 GQLCLAQSFSKNM-GLYG 391 (583)
Q Consensus 375 ~~vi~i~S~SK~~-~l~G 391 (583)
+--+++.|..|.+ |-||
T Consensus 223 gvD~~~~s~hK~l~g~pG 240 (406)
T TIGR01814 223 GVDFACWCTYKYLNAGPG 240 (406)
T ss_pred CCCEEEEcCccccCCCCC
Confidence 4568889999976 3356
|
This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen. |
| >PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates [] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.5e-08 Score=106.38 Aligned_cols=176 Identities=14% Similarity=0.037 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecc
Q psy14428 209 AKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYF 288 (583)
Q Consensus 209 ~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~ 288 (583)
.+-.+.+|+.++.. .-.++ |+|++.++..+ +..++.+||.|+++.-+.-.....+...|+++++++..
T Consensus 69 ~eAe~~aA~~fGAd-------~t~fl--vnGsT~g~~a~---i~a~~~~gd~VLv~RN~HkSv~~alil~ga~Pvyi~p~ 136 (417)
T PF01276_consen 69 KEAEELAARAFGAD-------KTFFL--VNGSTSGNQAM---IMALCRPGDKVLVDRNCHKSVYNALILSGAIPVYIPPE 136 (417)
T ss_dssp HHHHHHHHHHHTES-------EEEEE--SSHHHHHHHHH---HHHHTTTTCEEEEETT--HHHHHHHHHHTEEEEEEEEE
T ss_pred HHHHHHHHHhcCCC-------eEEEE--ecCchHHHHHH---HHHhcCCCCEEEEcCCcHHHHHHHHHHcCCeEEEecCC
Confidence 55556666666542 35667 99999999884 45567779999999999998888999999999998774
Q ss_pred cCCC---CCCCh-----hhHHHHHHcCCCCc--EEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCC-CCC
Q psy14428 289 DNKT---NGLDF-----AGMMEDIKAMPERS--ILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLG-LTS 357 (583)
Q Consensus 289 d~~~---~g~d~-----~~l~~~l~~~~~~~--~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~-l~~ 357 (583)
+++. .++++ +.+++++++.+... +++++.+|.- -|.+.+ +++|+++|.++++.|++||||+. |.|
T Consensus 137 ~~~~gi~~~i~~~~~~~~~i~~~l~~~p~~k~~~~vvlt~PTY-~Gv~~d---i~~I~~~~h~~~~~llvDEAhGah~~F 212 (417)
T PF01276_consen 137 DNEYGIIGGISPDEFNEEDIEEALKEHPDAKAPRLVVLTSPTY-YGVCYD---IKEIAEICHKHGIPLLVDEAHGAHFGF 212 (417)
T ss_dssp E-TTS-BEEB-GGGGSHHHHHHHHHHCTTCHCESEEEEESS-T-TSEEE----HHHHHHHHCCTECEEEEE-TT-TTGGC
T ss_pred ccccCCccCCChhhhhHHHHHHHHHhCccccCceEEEEeCCCC-CeEEEC---HHHHHHHhcccCCEEEEEccccccccC
Confidence 3321 23556 88888888764332 2355555433 388886 56668889999999999999864 334
Q ss_pred CCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcC
Q psy14428 358 GDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTP 402 (583)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p 402 (583)
.+...+...+..-......++++.|.-|++ |++.=+.++-+..
T Consensus 213 ~~lp~~a~~~gad~~~~~~~~vvqS~HKtL--~altQts~lh~~~ 255 (417)
T PF01276_consen 213 HPLPRSALALGADRPNDPGIIVVQSTHKTL--PALTQTSMLHVKG 255 (417)
T ss_dssp SGGGTTCSSTTSS-CTSBEEEEEEEHHHHS--SS-TT-EEEEEET
T ss_pred CCCccchhhccCccccccceeeeechhhcc--cccccceEEEecC
Confidence 321111101100011234689999999997 6777775554333
|
One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D. |
| >COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.7e-07 Score=94.86 Aligned_cols=191 Identities=18% Similarity=0.132 Sum_probs=132.3
Q ss_pred CCChHHHHHHHHHhccC-----CCCCCC--CCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHH
Q psy14428 181 YVLPSVKEAERRIYEKN-----LDHEYA--NIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLER 253 (583)
Q Consensus 181 ~~~~~v~~a~~~~~~~~-----~~~~Y~--~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~ 253 (583)
++.+.+.+++...+... ..+.|+ ......+-|+.||+.++ +++++|++ |+|++++..++..-...
T Consensus 12 p~~~~v~~~m~~~~~~~fgNPsS~H~~G~~A~~~ve~AR~~iA~llg------a~~~eIiF--TSG~TEsnNlaI~g~~~ 83 (386)
T COG1104 12 PVDPEVLEAMLPYLTEVFGNPSSLHSFGREARKAVEEAREQIAKLLG------ADPEEIIF--TSGATESNNLAIKGAAL 83 (386)
T ss_pred CCCHHHHHHHHHHHHhhcCCccchhHhHHHHHHHHHHHHHHHHHHhC------CCCCeEEE--ecCCcHHHHHHHHhhHH
Confidence 35677777776666431 122232 12335778888888886 56799999 99999999986322111
Q ss_pred hC---CCCCEEEEcCCCChhhHHHHhhc---CCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCC
Q psy14428 254 FY---PGVKTVYFPTPTWNGHVRFCTDS---RLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDL 327 (583)
Q Consensus 254 ~~---~~gd~Vlv~~P~y~~~~~~~~~~---G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~ 327 (583)
.. +.|..|++..-..+...+.++.. |.+|.++|+ |. ++-+|++.++++| ++++.++-+-.-||=||++.
T Consensus 84 a~~~~~~~~HIIts~iEH~aVl~~~~~Le~~g~~Vtyl~V-~~-~G~v~~e~L~~al---~~~T~LVSim~aNnE~G~IQ 158 (386)
T COG1104 84 AYRNAQKGKHIITSAIEHPAVLNTCRYLERQGFEVTYLPV-DS-NGLVDLEQLEEAL---RPDTILVSIMHANNETGTIQ 158 (386)
T ss_pred hhhcccCCCeEEEcccccHHHHHHHHHHHhcCCeEEEeCC-CC-CCeEcHHHHHHhc---CCCceEEEEEecccCeeecc
Confidence 11 24778888877777777766665 999999999 55 4678999999998 68899999999999999988
Q ss_pred CHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEE
Q psy14428 328 SEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSV 399 (583)
Q Consensus 328 s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~ 399 (583)
+. ++|.++|+++++++.+|-+-.- +. -+..+ +..+--+..-|--|..|.-| +|.++.
T Consensus 159 pI---~ei~~i~k~~~i~fHvDAvQa~---Gk---ipi~~----~~~~vD~ls~SaHK~~GpkG--iGaLyv 215 (386)
T COG1104 159 PI---AEIGEICKERGILFHVDAVQAV---GK---IPIDL----EELGVDLLSFSAHKFGGPKG--IGALYV 215 (386)
T ss_pred cH---HHHHHHHHHcCCeEEEehhhhc---Cc---eeccc----cccCcceEEeehhhccCCCc--eEEEEE
Confidence 85 5558889999999999987421 11 00011 11111233345569888777 588887
|
|
| >COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.4e-07 Score=91.85 Aligned_cols=217 Identities=15% Similarity=0.109 Sum_probs=151.8
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhh----HHHHhhcCCe
Q psy14428 206 GGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGH----VRFCTDSRLN 281 (583)
Q Consensus 206 ~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~----~~~~~~~G~~ 281 (583)
+-...|.+.||..-+....+. ++.|+.|+.++ +..+..+||.|+-.+--|.+. ...++..|++
T Consensus 62 PT~~vlE~RiAaLEGG~aa~a----------~aSG~AA~~~a---i~~la~aGD~iVss~~LYGGT~~lf~~tl~~~Gi~ 128 (426)
T COG2873 62 PTTDVLEERIAALEGGVAALA----------VASGQAAITYA---ILNLAGAGDNIVSSSKLYGGTYNLFSHTLKRLGIE 128 (426)
T ss_pred chHHHHHHHHHHhhcchhhhh----------hccchHHHHHH---HHHhccCCCeeEeeccccCchHHHHHHHHHhcCcE
Confidence 345778888888776543332 77788888875 344566699998887766655 4456778999
Q ss_pred EEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCC
Q psy14428 282 VGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFD 361 (583)
Q Consensus 282 ~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~ 361 (583)
+..++- + |++.+++++ .+++|++++-+-.||-+.+.+ +++|.++|+++++++|+|..+..-.
T Consensus 129 v~fvd~---~----d~~~~~~aI---~~nTkavf~EtigNP~~~v~D---ie~ia~iAh~~gvpliVDNT~atpy----- 190 (426)
T COG2873 129 VRFVDP---D----DPENFEAAI---DENTKAVFAETIGNPGLDVLD---IEAIAEIAHRHGVPLIVDNTFATPY----- 190 (426)
T ss_pred EEEeCC---C----CHHHHHHHh---CcccceEEEEeccCCCccccC---HHHHHHHHHHcCCcEEEecCCCcce-----
Confidence 988843 2 788999988 789999999999999999887 5667888999999999999875422
Q ss_pred CchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhH-----H---------------------HH-HHHH
Q psy14428 362 KDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDET-----E---------------------RI-MSQL 414 (583)
Q Consensus 362 ~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~-----~---------------------~l-i~~l 414 (583)
-++.+ +.+--|++.|.||.+|-.|--+|=+++-+.+-++. + .+ ++.-
T Consensus 191 ----l~rP~--~hGADIVvHS~TK~igGhGt~iGG~iVD~G~FDw~~~~rfP~~~~p~p~YhGl~~~~~~g~~af~~~~r 264 (426)
T COG2873 191 ----LCRPI--EHGADIVVHSATKYIGGHGTAIGGVIVDGGKFDWTANGRFPEFTTPDPSYHGLVYTETFGNAAFIIKAR 264 (426)
T ss_pred ----ecchh--hcCCCEEEEeecccccCCccccceEEEeCCccccccCCCCcccCCCCccccceehhhhcccHHHHHHHH
Confidence 12221 24567899999999998999999887732211100 0 01 1111
Q ss_pred HHHHhccccCCChHHHHHHHHHhCC--hhhhhhhhhHHHHHHHHHHH
Q psy14428 415 KILIRGFYSNPPIHGARIVTEILSD--PKLKAQCDETERIMSQLKIL 459 (583)
Q Consensus 415 ~~~~~~~~~~~s~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~l~~~ 459 (583)
....+....+.+++..+.+.+-++. -.+++|.++..++.+.+.+-
T Consensus 265 ~~~lRDlGa~lsPfnAfl~lqGlETL~LRmerH~~NA~~vA~~L~~H 311 (426)
T COG2873 265 VQLLRDLGATLSPFNAFLLLQGLETLSLRMERHCENALKVAEFLENH 311 (426)
T ss_pred HHHHHhcccccCcHHHHHHHhchhhhHHHHHHHHHhHHHHHHHHhcC
Confidence 1223455566677777777777764 46788888888777766543
|
|
| >PRK13034 serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.5e-07 Score=99.12 Aligned_cols=215 Identities=15% Similarity=0.032 Sum_probs=122.7
Q ss_pred hhhHhhccccccCCCCCccccCCccccCCCCCCCCChHHHHHHHHHh-cc-CCCCCCCC----CCCCHHHHH----HHHH
Q psy14428 148 KPLKQQLKGFNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIY-EK-NLDHEYAN----IGGDAKFCK----LAAQ 217 (583)
Q Consensus 148 ~~i~~l~~~~~~~~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~-~~-~~~~~Y~~----~~G~~~Lr~----aia~ 217 (583)
..++.++..-. ......++|-..+.. ..|.+++++.... .. +....+.. ..-..+|.+ .+++
T Consensus 14 ~~~~~~~~~~~-~~~~~~~~l~~sen~-------~~p~v~~a~~~~~~~~~~~g~~gsr~~~G~~~~~~lE~~~~~~la~ 85 (416)
T PRK13034 14 DEVFAAINKEL-ERQQDHLELIASENF-------TSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEFVDEVEALAIERAKQ 85 (416)
T ss_pred HHHHHHHHHHH-HHHhcCeeecccccC-------CCHHHHHHhcchhhcCCCCCCCCCcccCCChHHHHHHHHHHHHHHH
Confidence 34555544211 123455666544432 4578888877664 22 11111111 233566666 7777
Q ss_pred HHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhh-HHHHhh--cCCeE--EEEecccCCC
Q psy14428 218 LAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGH-VRFCTD--SRLNV--GAYRYFDNKT 292 (583)
Q Consensus 218 ~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~-~~~~~~--~G~~~--~~v~~~d~~~ 292 (583)
+++.+ ..++ .+++|+.|+..+ +..++++||+|+++..+|... ..-++. .+... +.++. +..+
T Consensus 86 l~g~~--------~alv-~~~SG~~A~~~~---l~al~~~GD~Vl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~ 152 (416)
T PRK13034 86 LFGCD--------YANV-QPHSGSQANGAV---YLALLKPGDTILGMSLSHGGHLTHGAKVSLSGKWYNAVQYGV-DRLT 152 (416)
T ss_pred HhCCC--------ceEE-ecCCcHHHHHHH---HHHhcCCCCEEEEcCccceeeeecCCcceeccceeeeEEccc-cccc
Confidence 77542 3322 156778888874 445677899999999988652 111111 12111 34444 3445
Q ss_pred CCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHH
Q psy14428 293 NGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAK 372 (583)
Q Consensus 293 ~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~ 372 (583)
..+|++.+++.++. .+++++++..+.+ |... ++.+|.++|+++|+++|+|++..--.+... ....+
T Consensus 153 ~~~d~~~le~~l~~--~~~klVi~~~~~~--g~~~---dl~~l~~la~~~g~~livD~Aha~G~~~~g-~~~~~------ 218 (416)
T PRK13034 153 GLIDYDEVEELAKE--HKPKLIIAGFSAY--PREL---DFARFREIADEVGALLMVDMAHIAGLVAAG-EHPNP------ 218 (416)
T ss_pred CCcCHHHHHHHHhh--cCCeEEEECCCcc--cccc---CHHHHHHHHHHcCCEEEEeCcccccCcccC-CCCCC------
Confidence 66899999888753 2467777766554 4444 456667789999999999999654332210 00001
Q ss_pred hcCcEEEEecCcccccccCccceEEEE
Q psy14428 373 EVGQLCLAQSFSKNMGLYGERVGTFSV 399 (583)
Q Consensus 373 ~~~~vi~i~S~SK~~~l~GlRiG~lv~ 399 (583)
...--+++.|++|.++.+ .-|++++
T Consensus 219 ~~~~Di~~~s~~K~l~g~--~GG~v~~ 243 (416)
T PRK13034 219 FPHAHVVTTTTHKTLRGP--RGGMILT 243 (416)
T ss_pred CCCceEEEEeCcccCCCC--CCeEEEE
Confidence 112358899999998423 2477776
|
|
| >COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.5e-06 Score=88.43 Aligned_cols=227 Identities=15% Similarity=0.119 Sum_probs=144.2
Q ss_pred CeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChh--hHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCC
Q psy14428 231 RLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNG--HVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMP 308 (583)
Q Consensus 231 ~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~--~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~ 308 (583)
.++++ +.+|+.+++. .+..+.+|||+|++..-+... +..+++.+|++++.+.. + ....++++++++.|++ .
T Consensus 57 ~~~ll-~gsGt~amEA---av~sl~~pgdkVLv~~nG~FG~R~~~ia~~~g~~v~~~~~-~-wg~~v~p~~v~~~L~~-~ 129 (383)
T COG0075 57 DVVLL-SGSGTLAMEA---AVASLVEPGDKVLVVVNGKFGERFAEIAERYGAEVVVLEV-E-WGEAVDPEEVEEALDK-D 129 (383)
T ss_pred cEEEE-cCCcHHHHHH---HHHhccCCCCeEEEEeCChHHHHHHHHHHHhCCceEEEeC-C-CCCCCCHHHHHHHHhc-C
Confidence 44442 5667778887 456677789999998877433 47789999999999987 3 3467899999999974 4
Q ss_pred CCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCccccc
Q psy14428 309 ERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMG 388 (583)
Q Consensus 309 ~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~ 388 (583)
+..+++.+++.--+||+..+ +++|.++|++|+.++|+|-+=+ +++. .+. .+..+--+++.+--|.++
T Consensus 130 ~~~~~V~~vH~ETSTGvlnp---l~~I~~~~k~~g~l~iVDaVsS---~Gg~-----~~~--vd~wgiDv~itgSQK~l~ 196 (383)
T COG0075 130 PDIKAVAVVHNETSTGVLNP---LKEIAKAAKEHGALLIVDAVSS---LGGE-----PLK--VDEWGIDVAITGSQKALG 196 (383)
T ss_pred CCccEEEEEeccCcccccCc---HHHHHHHHHHcCCEEEEEeccc---CCCc-----ccc--hhhcCccEEEecCchhcc
Confidence 56677878888889998875 6677888999999999999853 2221 111 244455677888889986
Q ss_pred c-cCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCC
Q psy14428 389 L-YGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNP 467 (583)
Q Consensus 389 l-~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~ 467 (583)
. ||+ |.+.+ + ++..+++.......+ . + .++...+..++. ......|
T Consensus 197 ~PPGl--a~v~~--S-----~~a~e~~~~~~~~~~----y---------l----------DL~~~~~~~~~~-~~~p~Tp 243 (383)
T COG0075 197 APPGL--AFVAV--S-----ERALEAIEERKHPSF----Y---------L----------DLKKWLKYMEKK-GSTPYTP 243 (383)
T ss_pred CCCcc--ceeEE--C-----HHHHHHHhcCCCCce----e---------e----------cHHHHHHHHhhc-CCCCCCC
Confidence 5 674 77777 5 456666664432200 0 0 011111111110 1122355
Q ss_pred ccchhhHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy14428 468 PIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGS 515 (583)
Q Consensus 468 p~~g~~i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~ 515 (583)
|.+..|-+-..+. ..-.+-++...+|.+...+.+.+.++.+|.
T Consensus 244 pv~~i~aL~~al~-----~i~~EGle~r~~RH~~~~~a~r~~~~alGl 286 (383)
T COG0075 244 PVNLIYALREALD-----LILEEGLEARIARHRRLAEALRAGLEALGL 286 (383)
T ss_pred CHHHHHHHHHHHH-----HHHHhhHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 6555544443332 122233455566777888888888888763
|
|
| >PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.7e-08 Score=99.29 Aligned_cols=194 Identities=13% Similarity=0.043 Sum_probs=115.6
Q ss_pred CHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHh--CC-CCCEEEEcCCCChhhHHHHhhcCCeEEE
Q psy14428 208 DAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERF--YP-GVKTVYFPTPTWNGHVRFCTDSRLNVGA 284 (583)
Q Consensus 208 ~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~--~~-~gd~Vlv~~P~y~~~~~~~~~~G~~~~~ 284 (583)
.++|.+.|.+....-.+...+-..|++ .+|++|.+..+.-.|... .. +--.|+...|.|+.|...-....-....
T Consensus 45 s~eL~~~Ir~LH~~VGNAvt~gr~IV~--GtGsTQL~~AalyALSp~~~~~~~p~~VVa~aPYY~~Y~~qt~~f~s~~y~ 122 (363)
T PF04864_consen 45 SPELERQIRRLHRVVGNAVTDGRYIVF--GTGSTQLFNAALYALSPNASPSSSPASVVAAAPYYSSYPEQTDFFDSRLYK 122 (363)
T ss_dssp -HHHHHHHHHHHHHH-SB--TTSEEEE--ECHHHHHHHHHHHHHCHHT-TTSSSEEEEE-SS--CHHHHHCCCT-BTTEE
T ss_pred cHHHHHHHHHHHHHhccccccCcEEEE--cCCHHHHHHHHHHhcCCCCCCCCCCceeEecCCCccchHHHHHhccccCcc
Confidence 378888888877665444455557888 899999888753333222 11 1137999999999999876554433322
Q ss_pred EecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCch
Q psy14428 285 YRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDA 364 (583)
Q Consensus 285 v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~ 364 (583)
..= |...+ . .......-+=++++||||.|.. ++.++ +.-+..+|-|-+|.-=.|..
T Consensus 123 w~G-da~~~----~------~~~~~~~~IElVTSPNNPDG~l-----r~~V~---~g~~~k~I~D~AYYWPhyTp----- 178 (363)
T PF04864_consen 123 WAG-DASNF----K------NSDNPSPYIELVTSPNNPDGQL-----REAVL---NGSSGKVIHDLAYYWPHYTP----- 178 (363)
T ss_dssp EEE-ECCCG----T------T-S-CCGEEEEEESS-TTT-----------SS---TTTEEEEEEE-TT-STTTS------
T ss_pred ccc-cHHhh----c------cCCCCCCeEEEEeCCCCCcccc-----cchhc---CCCCcceeeeeeeecccccc-----
Confidence 222 22211 1 1113456777889999999964 23333 45566789999996555542
Q ss_pred HHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhC
Q psy14428 365 FSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILS 438 (583)
Q Consensus 365 ~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~ 438 (583)
+.+ ..+.-|-+.|+||.=|=+|-|+||+++ .| +++.++|.+.......++|.=+|.=++.+|+
T Consensus 179 --I~~---~aD~DiMLFT~SK~TGHAGSR~GWAlV--KD----~~Va~kM~~y~~lnTiGvS~dsQLRa~kiLk 241 (363)
T PF04864_consen 179 --ITA---PADHDIMLFTLSKLTGHAGSRFGWALV--KD----EEVAKKMTKYMELNTIGVSRDSQLRALKILK 241 (363)
T ss_dssp ----S----B--SEEEEEHHHHCS-GGG-EEEEEE--S-----HHHHHHHHHHHHHHCSS--HHHHHHHHHHHH
T ss_pred --cCC---CCCCceEEEEEecccCccccccceeee--cC----HHHHHHHHHHHHHhcccCcHHHHHHHHHHHH
Confidence 222 234568899999999999999999999 76 6899999999888889999888887766654
|
Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B. |
| >PLN03032 serine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.4e-07 Score=97.06 Aligned_cols=233 Identities=11% Similarity=0.027 Sum_probs=144.8
Q ss_pred CCHHHHHHHHHHHhCCCCCCCCCCCe--EEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEE
Q psy14428 207 GDAKFCKLAAQLAYGEDFPAFKDNRL--AIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGA 284 (583)
Q Consensus 207 G~~~Lr~aia~~~~~~~g~~~~~~~I--~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~ 284 (583)
...++.+.+.+++.+..| .+++++ ++ |+|||+|..++....+...+ +..|+++.-........++..|.++..
T Consensus 63 ~a~~~e~~v~~~ia~llg--~~~~~~~G~f--TsGGTEaNl~al~~ar~~~~-~~~vi~s~~~H~Sv~kaa~~lg~~~~~ 137 (374)
T PLN03032 63 HSRQFEVGVLDWFARLWE--LEKDEYWGYI--TTCGTEGNLHGILVGREVFP-DGILYASRESHYSVFKAARMYRMEAVK 137 (374)
T ss_pred cHHHHHHHHHHHHHHHhC--CCCccCCEEE--eCchHHHHHHHHHHHHHhCC-CcEEEeCCCceeHHHHHHHHcCCCCeE
Confidence 345666666666655444 356666 88 99999999776333232233 457777777777777888889999989
Q ss_pred EecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcC-----eEEEEeccCCCCCCCC
Q psy14428 285 YRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRH-----LYPFFDMAYLGLTSGD 359 (583)
Q Consensus 285 v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~-----i~iI~De~Y~~l~~~~ 359 (583)
||+ |+ ++.+|++.+++.+++...++.+++++-.+|+||.+-+ +++|.++|++++ +++.+|-+++.....-
T Consensus 138 V~~-d~-~g~id~~~L~~~i~~~~~~~~lvv~tagtt~tG~idp---i~eI~~i~~~~g~~~~~~~lHvDaA~gg~~~p~ 212 (374)
T PLN03032 138 VPT-LP-SGEIDYDDLERALAKNRDKPAILNVNIGTTVKGAVDD---LDRILRILKELGYTEDRFYIHCDGALFGLMMPF 212 (374)
T ss_pred eee-CC-CCcCcHHHHHHHHHHcCCCCEEEEEEecCcCCccCCC---HHHHHHHHHHhCCCCCCeeEEEEccchhhhhhc
Confidence 998 55 4689999999999754446778888889999999866 556677788885 5899999987643210
Q ss_pred CCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhcc-----cc-----CCChHH
Q psy14428 360 FDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGF-----YS-----NPPIHG 429 (583)
Q Consensus 360 ~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~-----~~-----~~s~~~ 429 (583)
. ...+.+ .+. . +---..-|..|..+ .-.-+|.++. .+ ..++.+....... .. +.+.+.
T Consensus 213 ~-~~~~~~-~~~-~-~vDSis~s~HK~~g-~P~g~G~ll~--r~-----~~~~~~~~~~~Yl~~~d~ti~gSR~g~~~l~ 280 (374)
T PLN03032 213 V-SRAPEV-TFR-K-PIGSVSVSGHKFLG-CPMPCGVALT--RK-----KHVKALSQNVEYLNSRDATIMGSRNGHAPLY 280 (374)
T ss_pred c-CCCccc-CCC-c-CCcEEEECcccccC-CCcCeEEEEE--Ec-----hhhHhhccCCcccCCCCCcccCCCchHHHHH
Confidence 0 000000 111 1 11235567889776 4455788888 52 3444443211111 01 123455
Q ss_pred HHHHHHHhCChhhhhhhhhHHHHHHHHHHHHh
Q psy14428 430 ARIVTEILSDPKLKAQCDETERIMSQLKILIR 461 (583)
Q Consensus 430 q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r 461 (583)
.++....+..+.+.+..++..+....+.+.++
T Consensus 281 ~w~~l~~~G~~g~~~~~~~~~~~a~~l~~~l~ 312 (374)
T PLN03032 281 LWYTLRRKGYRGIKRDVQHCMRNAHYLKDRLT 312 (374)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666555555444444443
|
|
| >PRK05769 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=1e-06 Score=95.00 Aligned_cols=254 Identities=13% Similarity=0.050 Sum_probs=142.7
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
.+...+|+..|.+....|.- .+.+.+++.+.+.... + +....-..+....+|+.+...... -..+++.+ +++|
T Consensus 52 dG~~ylD~~~g~~~~~lGh~--~p~v~~Ai~~ql~~~~-~-~~~~~~~~~~~~~lAe~L~~~~p~-~~~~~v~f--~~SG 124 (441)
T PRK05769 52 DGNVYLDFNAGIAVTNVGHA--HPKVVKAVKEQAEKFL-H-YSLTDFYYEPAVELAERLVEIAPG-GFEKKVFF--TNSG 124 (441)
T ss_pred CCCEEEECCCchhhcccCCC--CHHHHHHHHHHHHhcc-C-ccCcccCCHHHHHHHHHHHHhCCC-CCCCEEEE--CCch
Confidence 45567898888776666653 3677777776665421 1 111000123445556655432210 01268999 9999
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhh-cCC-------------eEEEEecccCCC--CC-CC-------
Q psy14428 241 SGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTD-SRL-------------NVGAYRYFDNKT--NG-LD------- 296 (583)
Q Consensus 241 ~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~-~G~-------------~~~~v~~~d~~~--~g-~d------- 296 (583)
++|.+.+..+.+.... .++|+...-+|.+....... .|. .+..+|..+... ++ -+
T Consensus 125 sEA~e~AlklAr~~tg-r~~Ii~~~~~yHG~t~~~ls~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (441)
T PRK05769 125 TESNEAAIKIARYHTG-RKYIIAFLGAFHGRTYGSLSLTASKPVQRKGFFPLMPGVIHVPYPNPYRNPWGIENPEECGNA 203 (441)
T ss_pred HHHHHHHHHHHHHHhC-CCeEEEECCCcCCccHHHHHhcCCCcccccCCCCCCCCeEEeCCCccccccccCCchHHHHHH
Confidence 9999988766665543 46788877777765432221 111 123333311000 00 01
Q ss_pred -hhhHHHHH-Hc--CCCCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHH
Q psy14428 297 -FAGMMEDI-KA--MPERSILFLQTSSHNPTGV-DLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFA 371 (583)
Q Consensus 297 -~~~l~~~l-~~--~~~~~~~i~i~~p~NPTG~-~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~ 371 (583)
++.+++.+ ++ ......++++-.-+.-.|. ..+++.+++|.++|+++|+++|.||++..|...+ .......+
T Consensus 204 ~~~~le~~~~~~~~~~~~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~tG~gr~G---~~~a~~~~- 279 (441)
T PRK05769 204 VLDFIEDYLFKKLVPPEEVAAIIVEPIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRTG---KMFAIEHF- 279 (441)
T ss_pred HHHHHHHHHHhhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccc---ceehhhcc-
Confidence 12244322 21 1233444444322333454 3568889999999999999999999999875443 11122222
Q ss_pred HhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhC
Q psy14428 372 KEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILS 438 (583)
Q Consensus 372 ~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~ 438 (583)
+..+.++ +|||.++ .|+++|++++ + +++++.+...... .++.+++++.++.+.++
T Consensus 280 gv~pDiv---t~~K~l~-~G~p~gav~~--~-----~~i~~~~~~~~~~-T~~g~p~~~aaa~a~L~ 334 (441)
T PRK05769 280 GVEPDII---TLAKAIA-GGLPLGAVIG--R-----AELMFLPPGSHAN-TFGGNPVAAAAALATLE 334 (441)
T ss_pred CCCCCEE---EEccccc-CCcccEEEEE--e-----hhhhhcCCCCCCC-CCCcCHHHHHHHHHHHH
Confidence 2122343 5899999 8999999998 5 3565433222223 33457788777776664
|
|
| >PRK13580 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.4e-07 Score=97.93 Aligned_cols=220 Identities=13% Similarity=0.005 Sum_probs=127.6
Q ss_pred CCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCC------CCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEe
Q psy14428 163 PKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHE------YANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQ 236 (583)
Q Consensus 163 ~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~------Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~ 236 (583)
...|+|=..+.. ..+.+.+++...+.+....+ |.......++.....+..++-++... -+|-.
T Consensus 49 ~~~l~LiasEN~-------~s~~v~~a~~s~l~nkyaeg~pg~ryy~g~~~~d~ie~l~~~ra~~lf~a~~--anvqp-- 117 (493)
T PRK13580 49 RSSLKLIASENY-------SSLAVQLAMGNLLTDKYAEGTPGHRFYAGCQNVDTVEWEAAEHAKELFGAEH--AYVQP-- 117 (493)
T ss_pred hcCceEeccccc-------CCHHHHHHhcccccccCcCCCCCccccCCCchHHHHHHHHHHHHHHHhCCCc--ccccC--
Confidence 455666544432 45778888766665422222 33344455555555555555444332 34443
Q ss_pred cCCchhHHHHHHHHHHHhCCC-------------------------------CCEEEEcCCCChhhHH-----HHhhcCC
Q psy14428 237 GISGSGSLRVGTAFLERFYPG-------------------------------VKTVYFPTPTWNGHVR-----FCTDSRL 280 (583)
Q Consensus 237 t~G~~~al~l~~~~l~~~~~~-------------------------------gd~Vlv~~P~y~~~~~-----~~~~~G~ 280 (583)
-+ |++|...+ +..++.| ||+|+..++.-..+.. .+.....
T Consensus 118 ~S-g~~An~~v---~~all~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~gd~i~~l~l~~GGHlthg~~~n~~~~~~ 193 (493)
T PRK13580 118 HS-GADANLVA---FWAILAHKVESPALEKLGAKTVNDLTEEDWEALRAELGNQRLLGMSLDSGGHLTHGFRPNISGKMF 193 (493)
T ss_pred CC-cHHHHHHH---HHHHhcccccCcchhccccccccccchhhhhhhhccCCCCEEEeecCCCCCeeecCcccchhhhee
Confidence 44 44454443 2233332 7999988776544422 1222235
Q ss_pred eEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCC
Q psy14428 281 NVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDF 360 (583)
Q Consensus 281 ~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~ 360 (583)
+.+.+++ |+++..+|++.+++.+. +.+..++++...|= |...+ +++|.++|+++|+++++|+++.--..++.
T Consensus 194 ~~~~y~v-d~~~g~iD~d~l~~~~~---~~~plvii~g~S~~-~~~~d---l~~i~eia~~~gA~L~VD~AH~~Gligg~ 265 (493)
T PRK13580 194 HQRSYGV-DPDTGLLDYDEIAALAR---EFKPLILVAGYSAY-PRRVN---FAKLREIADEVGAVLMVDMAHFAGLVAGK 265 (493)
T ss_pred eeEeccc-CcccCccCHHHHHHHHh---hcCCEEEEeCcccc-CCCcC---HHHHHHHHHHcCCEEEEECchhhceeccc
Confidence 6777777 55567899999999884 44445555555555 33555 66667778999999999999865443321
Q ss_pred CCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHH
Q psy14428 361 DKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILI 418 (583)
Q Consensus 361 ~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~ 418 (583)
... ..+....+--|+++|++|++ .|-|.|++++ + +++++.+.+..
T Consensus 266 --~~~--~~~~~~~~~D~vtgT~hKaL--~GP~GG~I~~--~-----~~l~~~L~~a~ 310 (493)
T PRK13580 266 --VFT--GDEDPVPHADIVTTTTHKTL--RGPRGGLVLA--K-----KEYADAVDKGC 310 (493)
T ss_pred --cch--hhcCCCCCCcEEEeCChhhc--cCCCeEEEEe--c-----HHHHHHHhhCC
Confidence 100 00000112347899999988 3555689888 5 47888875443
|
|
| >PLN02482 glutamate-1-semialdehyde 2,1-aminomutase | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.9e-06 Score=91.97 Aligned_cols=241 Identities=12% Similarity=0.046 Sum_probs=146.5
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
.+...||+..|......|.- .+.+.+++.+.++... .+.. ..++...+|+.+..... ..+++.+ +++|
T Consensus 97 dG~~yiD~~~g~g~~~lGh~--~p~v~~av~~ql~~~~--~~~~---~~~~~~~lAe~l~~~~p---~~~~v~f--~~SG 164 (474)
T PLN02482 97 DGNEYIDYVGSWGPAIIGHA--DDEVLAALAETMKKGT--SFGA---PCLLENVLAEMVIDAVP---SVEMVRF--VNSG 164 (474)
T ss_pred CCCEEEEecccccccccCCC--CHHHHHHHHHHHhhCC--CCCC---CCHHHHHHHHHHHHhCC---CCCEEEE--eCCh
Confidence 45667888777665555643 3677777777766532 2211 12455556666654321 1378999 9999
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHh-h-------------cCC------eEEEEecccCCCCCCChhhH
Q psy14428 241 SGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCT-D-------------SRL------NVGAYRYFDNKTNGLDFAGM 300 (583)
Q Consensus 241 ~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~-~-------------~G~------~~~~v~~~d~~~~g~d~~~l 300 (583)
++|.+.+..+.+.... .++|+...-+|.+....+. . .|. .++.+|. + |++.+
T Consensus 165 sEA~e~AlklAR~~tg-r~~Ii~~~g~YHG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~------n-d~~~l 236 (474)
T PLN02482 165 TEACMGVLRLARAYTG-REKIIKFEGCYHGHADSFLVKAGSGVATLGLPDSPGVPKAATSATLTAPY------N-DLEAV 236 (474)
T ss_pred HHHHHHHHHHHHHhcC-CCEEEEECCccCCCcchhhhhcCCCccccCCCCCCCCCCCCCCCeEEecC------C-ChHHH
Confidence 9999988776666544 4678887777877542211 0 011 1111221 1 67888
Q ss_pred HHHHHcCCCCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEE
Q psy14428 301 MEDIKAMPERSILFLQTSSHNPTGVDL-SEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCL 379 (583)
Q Consensus 301 ~~~l~~~~~~~~~i~i~~p~NPTG~~~-s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~ 379 (583)
++.+++......++++-.-+.-.|.+. +++-+++|.++|++||+++|.||+...|..+. ......+ +-.+.
T Consensus 237 ~~~l~~~~~~iAavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~tGfR~g~----~ga~~~~-gv~PD--- 308 (474)
T PLN02482 237 KKLFEANKGEIAAVILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMTGFRIAY----GGAQEYF-GITPD--- 308 (474)
T ss_pred HHHHHhCCCceEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCeecCc----chHhHHh-CCCCC---
Confidence 888865444455555543344456554 57889999999999999999999998774331 1111111 21223
Q ss_pred EecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHH---hccccCCChHHHHHHHHHh
Q psy14428 380 AQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILI---RGFYSNPPIHGARIVTEIL 437 (583)
Q Consensus 380 i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~---~~~~~~~s~~~q~~~~~~l 437 (583)
+-+|+|.+| .|+-+|.+++ . +++++.+.... ....++.++++..++.+.|
T Consensus 309 i~t~gK~lg-gG~Pigav~g--~-----~ei~~~~~~~~~~~~~~T~~gnpl~~aAala~L 361 (474)
T PLN02482 309 LTTLGKVIG-GGLPVGAYGG--R-----REIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTL 361 (474)
T ss_pred EEEecchhh-CCCceEEEEE--c-----HHHHHhhccCCCcccccCcchhHHHHHHHHHHH
Confidence 347899998 8999999988 5 57888775321 1123334566655554443
|
|
| >TIGR03372 putres_am_tran putrescine aminotransferase | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.5e-06 Score=91.63 Aligned_cols=245 Identities=13% Similarity=0.041 Sum_probs=141.5
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhcc-CCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCC
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEK-NLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGIS 239 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~-~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G 239 (583)
.+...+|+..|.+....|. ..|.+.+++.+.+.. .....|... +.+..+|+.+...... ..+++++ +++
T Consensus 73 dG~~ylD~~~g~~~~~lGh--~hp~v~~Av~~ql~~l~~~~~~~~~----~~~~~lAe~L~~~~p~--~~~~v~f--~~S 142 (442)
T TIGR03372 73 QGNEFIDCLGGFGIFNVGH--RNPNVIAAVENQLAKQPLHSQELLD----PLRALLAKTLAALTPG--KLKYSFF--CNS 142 (442)
T ss_pred CCCEEEECCccHHhhhcCC--CCHHHHHHHHHHHHhCCCcccccCC----HHHHHHHHHHHHhCCC--CcCEEEE--eCC
Confidence 4556788877766555554 346677777666644 212223322 3444455544432211 1257888 999
Q ss_pred chhHHHHHHHHHHHhC--CCCCEEEEcCCCChhhHHHHhhc-CC------------eEEEEecccCCCCCCChhhHHHHH
Q psy14428 240 GSGSLRVGTAFLERFY--PGVKTVYFPTPTWNGHVRFCTDS-RL------------NVGAYRYFDNKTNGLDFAGMMEDI 304 (583)
Q Consensus 240 ~~~al~l~~~~l~~~~--~~gd~Vlv~~P~y~~~~~~~~~~-G~------------~~~~v~~~d~~~~g~d~~~l~~~l 304 (583)
|++|.+.+..+.+... .....|+..+-+|.+........ |- .+..+|. -|.+.+++.+
T Consensus 143 GsEA~e~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~t~~~~~~~~~~p~~~~~~~~p~-------~d~~~~~~~l 215 (442)
T TIGR03372 143 GTESVEAALKLAKAYQSPRGKFTFIAASGAFHGKSLGALSATAKPAFRKPFMPLLPGFHHVAF-------GDIEAMLKAL 215 (442)
T ss_pred chHHHHHHHHHHHHHHhhcCCcEEEEECCCccCCCHHHhhccCCcccCCCCCCCCCCCEEeCC-------CCHHHHHHHH
Confidence 9999999876665543 22457888888877654322222 11 1222332 1556666666
Q ss_pred Hc---CCCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEE
Q psy14428 305 KA---MPERSILFLQTSSHNPTGVD-LSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLA 380 (583)
Q Consensus 305 ~~---~~~~~~~i~i~~p~NPTG~~-~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i 380 (583)
+. ...+..++++-.-+---|.. .+++-++++.++|+++|+++|.||+...|.-.+ .......+ +-.+.++
T Consensus 216 ~~~~~~~~~vAavIvEpv~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG---~~~a~e~~-gv~PDiv-- 289 (442)
T TIGR03372 216 NECKKTGDDVAAIILEPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTG---KMFACEHE-GVQPDIL-- 289 (442)
T ss_pred HHHhcCCCcEEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecccCCCccc---cchhhhhc-CCCCCee--
Confidence 43 22344455543333334544 468889999999999999999999998774333 12122222 2122333
Q ss_pred ecCcccccccC-ccceEEEEEcCCchhHHHHHHHHHHH--HhccccCCChHHHHHHHHHh
Q psy14428 381 QSFSKNMGLYG-ERVGTFSVLTPTSDETERIMSQLKIL--IRGFYSNPPIHGARIVTEIL 437 (583)
Q Consensus 381 ~S~SK~~~l~G-lRiG~lv~~~p~~~~~~~li~~l~~~--~~~~~~~~s~~~q~~~~~~l 437 (583)
++||.+| .| +-+|.+++ . +++++.+... .-...++.++++..++.+.|
T Consensus 290 -t~gK~lg-~G~~Pigavv~--~-----~~i~~~~~~~~~~~~~T~~gnp~~~Aaa~a~L 340 (442)
T TIGR03372 290 -CLAKALG-GGVMPIGATIA--T-----EAVFSVLFDNPFLHTTTFGGNPLACAAALATI 340 (442)
T ss_pred -eehhhhc-CCcccceEEEe--c-----HHHHHhhhccCccccCCCCCCHHHHHHHHHHH
Confidence 4899998 78 68999998 5 4777777421 11223444666666555544
|
Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine. |
| >KOG1368|consensus | Back alignment and domain information |
|---|
Probab=98.72 E-value=6.9e-07 Score=86.92 Aligned_cols=226 Identities=12% Similarity=0.109 Sum_probs=150.5
Q ss_pred CChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEE
Q psy14428 182 VLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTV 261 (583)
Q Consensus 182 ~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~V 261 (583)
|...+++++.++.-.+.. |....-.-.|.+.+|+..+++-| +++ ++|..+-+-. ++..+..+|.+|
T Consensus 34 PTdeMr~am~eA~vgDdV--yGeD~tt~rLE~~vA~l~GKEAg-------LFv--~SGTmgNlla---Im~Hc~~rg~ei 99 (384)
T KOG1368|consen 34 PTDEMRRAMAEASVGDDV--YGEDPTTNRLEQRVAELFGKEAG-------LFV--PSGTMGNLLA---IMVHCHQRGSEI 99 (384)
T ss_pred ChHHHHHHHhhcccCccc--ccCCccHHHHHHHHHHHhCccce-------eee--cccccccHHH---HHHHhcCCCceE
Confidence 456788877766544323 55555568999999999987543 445 7776665543 456677679999
Q ss_pred EEcCCCChh-h--HHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcC-----CCCcEEEEeCCCCCCCC-CCCCHHHH
Q psy14428 262 YFPTPTWNG-H--VRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAM-----PERSILFLQTSSHNPTG-VDLSEDQW 332 (583)
Q Consensus 262 lv~~P~y~~-~--~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~-----~~~~~~i~i~~p~NPTG-~~~s~~~~ 332 (583)
++.+-+... | -.+....|+.+.++.- +++..+++++++.++.-. .+.+++|.+-|-||-+| .+++.|++
T Consensus 100 i~gd~~HI~~~E~gg~s~l~gv~~~tv~~--e~dgtm~ledIe~~ir~~~GD~H~p~T~LIclENT~~~~Gg~vlPle~~ 177 (384)
T KOG1368|consen 100 IVGDRAHIHRYEQGGISQLAGVHVRTVKN--ENDGTMDLEDIEAAIRVPKGDCHMPPTKLICLENTHNNCGGKVLPLEEL 177 (384)
T ss_pred EeccchheeehhccChhhhccceeEeeee--CCCCeeeHHHHHHhhcCCCCCccCCCceEEEeeccccccCceEeeHHHH
Confidence 998876221 1 1234556777777654 455788999999998632 46789999998888887 99999999
Q ss_pred HHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHH
Q psy14428 333 RQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMS 412 (583)
Q Consensus 333 ~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~ 412 (583)
.++.++|+++++-+-.|-+-..-.-- ..-.+++.+....|.|=.+ |||.+|.| +|-+++ .+ .++|+
T Consensus 178 ~~v~~lak~~glkLH~DGARi~NAav---asgV~vk~i~~~fDSVsiC--LSKglgAP---VGSViV--G~----k~FI~ 243 (384)
T KOG1368|consen 178 DRVKALAKRHGLKLHMDGARIFNAAV---ASGVPVKKICSAFDSVSIC--LSKGLGAP---VGSVIV--GS----KDFID 243 (384)
T ss_pred HHHHHHHhccCCeeecchhhhhhHHH---HcCCCHHHHHHhhhhhhhh--hhccCCCC---cccEEE--cc----HHHHH
Confidence 99999999999999999874211100 0112344443334444332 79987644 787777 44 57898
Q ss_pred HHHHHHhccccCCChHHHHHHHHHh
Q psy14428 413 QLKILIRGFYSNPPIHGARIVTEIL 437 (583)
Q Consensus 413 ~l~~~~~~~~~~~s~~~q~~~~~~l 437 (583)
+.+........+.-..+..+++.+.
T Consensus 244 kA~~~RKalGGGmRQsGvLaaaaLv 268 (384)
T KOG1368|consen 244 KARHFRKALGGGMRQSGVLAAAALV 268 (384)
T ss_pred HHHHHHHHhcCchhHHHHHHHHHHH
Confidence 8887766665555444444444443
|
|
| >PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=5.5e-06 Score=89.10 Aligned_cols=241 Identities=11% Similarity=0.030 Sum_probs=145.0
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
.+...+|+..|.+....|.- .|.+.+++.+.++......+ +. +.+..+++.+..... ..+++.+ +++|
T Consensus 51 dG~~ylD~~~g~~~~~lGh~--~p~v~~ai~~q~~~~~~~~~-~~----~~~~~la~~l~~~~p---~~~~v~f--~~sG 118 (428)
T PRK12389 51 DGNKYIDYLAAYGPIITGHA--HPHITKAITEAAENGVLYGT-PT----ELEIEFAKMLKEAIP---SLEKVRF--VNSG 118 (428)
T ss_pred CCCEEEEccccccccccCCC--CHHHHHHHHHHHHhCCccCC-CC----HHHHHHHHHHHHhCC---CCcEEEE--eCCH
Confidence 45567888877776555643 36777777776654222222 22 333445555433221 2368999 9999
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHH-hhcCCe-------------------EEEEecccCCCCCCChhhH
Q psy14428 241 SGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFC-TDSRLN-------------------VGAYRYFDNKTNGLDFAGM 300 (583)
Q Consensus 241 ~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~-~~~G~~-------------------~~~v~~~d~~~~g~d~~~l 300 (583)
++|.+.+..+.+.... ...|+...-+|....... ...|.. +..+|. -|++.+
T Consensus 119 seA~e~AlklAr~~tg-r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l 190 (428)
T PRK12389 119 TEAVMTTIRVARAYTG-RTKIIKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPKSIAQEVITVPF-------NDIEAL 190 (428)
T ss_pred HHHHHHHHHHHHHhhC-CCEEEEECCCcCCChHHHHHhcCCcccccCCCCCCCCCCcccCceEEcCC-------CCHHHH
Confidence 9999988766665543 467887777777654322 211211 111111 167888
Q ss_pred HHHHHcCCCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEE
Q psy14428 301 MEDIKAMPERSILFLQTSSHNPTGVD-LSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCL 379 (583)
Q Consensus 301 ~~~l~~~~~~~~~i~i~~p~NPTG~~-~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~ 379 (583)
++.+++......++++-.-+.-.|.+ .+++-+++|.++|+++|+++|.||+...|.... . ......+-.+.+
T Consensus 191 ~~~l~~~~~~vaavi~EPv~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~Rt~~----~-~a~~~~gv~PDi-- 263 (428)
T PRK12389 191 KEALDKWGDEVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAFRFMY----G-GAQDLLGVEPDL-- 263 (428)
T ss_pred HHHHHhcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccccccccCc----c-hhhHHhCCCCCe--
Confidence 88786544445555554444445654 478889999999999999999999998884321 1 111111222233
Q ss_pred EecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHH---hccccCCChHHHHHHHHHh
Q psy14428 380 AQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILI---RGFYSNPPIHGARIVTEIL 437 (583)
Q Consensus 380 i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~---~~~~~~~s~~~q~~~~~~l 437 (583)
-+++|.++ .|+-+|.+++ + +++++.+.... ....++.++++..++.+.|
T Consensus 264 -vt~gK~lg-gG~Pi~av~~--~-----~~i~~~~~~~~~~~~~~T~~gnpl~~Aaala~L 315 (428)
T PRK12389 264 -TALGKIIG-GGLPIGAYGG--R-----KDIMEQVAPLGPAYQAGTMAGNPASMAAGIACL 315 (428)
T ss_pred -eeechhhc-CCCceeEEeE--H-----HHHHhhhccCCCcccccCCccCHHHHHHHHHHH
Confidence 37899998 8999999988 5 57887775211 1123345666655555444
|
|
| >COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.8e-06 Score=80.76 Aligned_cols=174 Identities=14% Similarity=0.092 Sum_probs=127.4
Q ss_pred CHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCC-ChhhHHHHhhcCCeEEEEe
Q psy14428 208 DAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPT-WNGHVRFCTDSRLNVGAYR 286 (583)
Q Consensus 208 ~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~-y~~~~~~~~~~G~~~~~v~ 286 (583)
+..|.+.+++|++- |.+-+ |+|+.++-+. .+..++.+||.|++..-. |..| -+++.+|.++..||
T Consensus 63 I~~F~~dlaeFlg~--------D~~R~--t~GARe~Kfa---vMhal~~~gd~vV~D~~aHYtty-vAAEragl~v~eVp 128 (382)
T COG1103 63 IKDFLEDLAEFLGM--------DEVRV--TAGAREAKFA---VMHALCKEGDWVVVDSLAHYTTY-VAAERAGLNVAEVP 128 (382)
T ss_pred HHHHHHHHHHHhCC--------ceeee--cccchhhHHH---HHHHhccCCCEEEEcCcchHHHH-HHHHhcCCeEEecC
Confidence 45677788888863 55667 9999999887 567788889999988776 6655 46788999999999
Q ss_pred cccCCCCCCChhhHHHHHHcC----CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCC
Q psy14428 287 YFDNKTNGLDFAGMMEDIKAM----PERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDK 362 (583)
Q Consensus 287 ~~d~~~~g~d~~~l~~~l~~~----~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~ 362 (583)
-.+..++.++++...+.+++. .....+.+++.+.---| +..+-++++++|++++++++...+|.-=..+
T Consensus 129 ~tg~Pey~i~~e~y~~viee~~~~~g~~~~lallTh~Dg~YG---Nl~Dakkva~ic~e~gvPlllN~AYt~Grmp---- 201 (382)
T COG1103 129 NTGYPEYKITPEGYAEVIEEVKDEGGDPPALALLTHVDGEYG---NLADAKKVAKICREYGVPLLLNCAYTVGRMP---- 201 (382)
T ss_pred CCCCCceEecHHHHHHHHHHHHhccCCCceEEEEeccCCCcC---CchhhHHHHHHHHHcCCceEeecceeecccc----
Confidence 654455788888877777653 24467777776655455 5566788999999999999999999543221
Q ss_pred chHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHH
Q psy14428 363 DAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKI 416 (583)
Q Consensus 363 ~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~ 416 (583)
.+.+ +-+--+.++|=-|+++ +.--+|.+.. . +++.+.+.+
T Consensus 202 --vs~k----e~g~DFiVgSGHKsmA-As~PiGvl~~--~-----eE~ae~V~r 241 (382)
T COG1103 202 --VSGK----EIGADFIVGSGHKSMA-ASAPIGVLAM--S-----EEWAEIVLR 241 (382)
T ss_pred --cccc----ccCCCEEEecCccchh-ccCCeeEEee--h-----hHHHHHHHh
Confidence 1222 2345678899999998 6668999888 5 355555444
|
|
| >PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.3e-06 Score=89.66 Aligned_cols=234 Identities=14% Similarity=0.153 Sum_probs=141.2
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCC--CCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecC
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNL--DHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGI 238 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~--~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~ 238 (583)
.+...+|+..|.+....|.- .|.+.+++.+.+++.. ...|. .....+|-+.++++. ..++++. ++
T Consensus 22 dG~~ylD~~~g~~~~~lGh~--~p~v~~ai~~ql~~~~~~~~~~~-~~~~~~la~~l~~~~--------~~~~v~~--~~ 88 (364)
T PRK04013 22 QGRRYLDLIAGIGVNVLGHN--HPEWVEEMSEQLEKLVVAGPMFE-HEEKEEMLEELSKWV--------NYEYVYM--GN 88 (364)
T ss_pred CCCEEEEcccChhhccCCCC--CHHHHHHHHHHHHhcCCccCCcC-CHHHHHHHHHHHhhc--------CCCEEEE--eC
Confidence 45567888877766666643 3566677776665411 11122 222344555555443 1358888 99
Q ss_pred CchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhc--------CCe-----EEEEecccCCCCCCChhhHHHHHH
Q psy14428 239 SGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDS--------RLN-----VGAYRYFDNKTNGLDFAGMMEDIK 305 (583)
Q Consensus 239 G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~--------G~~-----~~~v~~~d~~~~g~d~~~l~~~l~ 305 (583)
++++|++.+..+.+.. .+.++|+..+-+|.......-.. +.. +..+|+ . |.+.+++.+
T Consensus 89 SGseA~e~Alklar~~-~gr~~Ii~~~~syHG~t~~~ls~~~~~~~~~~~~p~~~~~~~~~~------~-d~~~l~~~i- 159 (364)
T PRK04013 89 SGTEAVEAALKFARLY-TGRKEIIAMTNAFHGRTMGALSATWKPKYREDFEPLVPGFKHIPF------N-DVEAAKEAI- 159 (364)
T ss_pred chHHHHHHHHHHHHHH-hCCCEEEEECCccccCchhhccCCCCcccccCCCCCCCCcEEecC------C-CHHHHHHHh-
Confidence 9999999986665554 32488999998887764332221 111 122222 1 567777766
Q ss_pred cCCCCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCc
Q psy14428 306 AMPERSILFLQTSSHNPTGV-DLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFS 384 (583)
Q Consensus 306 ~~~~~~~~i~i~~p~NPTG~-~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~S 384 (583)
.++..++++..-+.-.|. ..+++-+++|.++|+++|+++|+||+...+..+. ......+ +-.+.++ +++
T Consensus 160 --~~~~aAvivEpi~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~tG~RtG~----~~a~~~~-gv~PDiv---~~g 229 (364)
T PRK04013 160 --TKETAAVIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGLRTGK----FLAIEHY-KVEPDIV---TMG 229 (364)
T ss_pred --cCCcEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCCCc----hhHHHhc-CCCCCEE---Eec
Confidence 345666666555544444 4567889999999999999999999999884432 2222222 2233444 459
Q ss_pred ccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhC
Q psy14428 385 KNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILS 438 (583)
Q Consensus 385 K~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~ 438 (583)
|.++ .|+-+|.++. .. ++ . .......++.++++..++.+.++
T Consensus 230 K~lg-gG~P~~a~~~--~~-----~~-~---~~~~~~T~~gnp~~~aaa~a~l~ 271 (364)
T PRK04013 230 KGIG-NGVPVSLTLT--NF-----DV-E---RGKHGSTFGGNPLACKAVAVTLR 271 (364)
T ss_pred cccc-CCceeEEEEe--cc-----cc-c---CCCcCCCCCcCHHHHHHHHHHHH
Confidence 9998 7999999998 52 22 1 11122345566676666655543
|
|
| >COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.62 E-value=5.1e-06 Score=85.50 Aligned_cols=262 Identities=13% Similarity=0.109 Sum_probs=161.5
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhcc-C-CCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecC
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEK-N-LDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGI 238 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~-~-~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~ 238 (583)
.+..-|||..|.-....|+- .|.+.+++.+..+. . ....|. .+.+.++++.+.+..+ ..++|++ ++
T Consensus 40 ~G~~YlDf~~Giav~~lGH~--hP~iv~al~~Q~~kl~h~sn~~~-----~~~~~~la~~L~~~s~---~~d~vff--~N 107 (404)
T COG4992 40 QGREYLDFAAGIAVNNLGHC--HPALVEALKEQAEKLWHVSNLFY-----NEPQAELAEKLVELSP---FADRVFF--CN 107 (404)
T ss_pred CCCEeeeeccceeeeccCCC--CHHHHHHHHHHHHHhhhcccccC-----ChHHHHHHHHHHhhCc---cccEEEE--cC
Confidence 45677898887776667753 47777777765543 1 112232 2455666666654321 3689999 99
Q ss_pred CchhHHHHHHHHHHHhCC-C-CCEEEEcCCCChh-------------hHHHHhhcCCeEEEEecccCCCCCCChhhHHHH
Q psy14428 239 SGSGSLRVGTAFLERFYP-G-VKTVYFPTPTWNG-------------HVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMED 303 (583)
Q Consensus 239 G~~~al~l~~~~l~~~~~-~-gd~Vlv~~P~y~~-------------~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~ 303 (583)
+|++|.+.+..+.+.... + ..+|+...-+|.. |...|...=-.+..+|+. |++.++++
T Consensus 108 SGaEA~EaAiKlARk~~~~~~k~~Iia~~nsFHGRT~galS~t~~~ky~~~F~Pl~~g~~~vpfn-------Di~al~~a 180 (404)
T COG4992 108 SGAEANEAALKLARKYTGDPEKSKIIAFENSFHGRTLGALSATGQPKYRKGFGPLLPGFRHVPFN-------DIEALEAA 180 (404)
T ss_pred CcHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcCCccceeeeccCChhhccCCCCCCCCceecCCC-------CHHHHHHH
Confidence 999999998766665543 1 2356655555543 222222111123444441 78899888
Q ss_pred HHcCCCCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEec
Q psy14428 304 IKAMPERSILFLQTSSHNPTGVDL-SEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQS 382 (583)
Q Consensus 304 l~~~~~~~~~i~i~~p~NPTG~~~-s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S 382 (583)
+ .+.+.++++-.=|==-|+.. +++-++++.++|.+||+++|.||+--.+...+ .......+ .-.+. |-+
T Consensus 181 i---~~~taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRTG---k~fA~e~~-gV~PD---I~t 250 (404)
T COG4992 181 I---DEDTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTG---KLFAYEHY-GVEPD---ILT 250 (404)
T ss_pred h---ccCeEEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCccc---hHHHHHHh-CCCCC---EEE
Confidence 8 55788888766666667554 56678999999999999999999998887665 22222221 11223 345
Q ss_pred CcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHh---CChhhhhhhhhHH-HHHHHHHH
Q psy14428 383 FSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEIL---SDPKLKAQCDETE-RIMSQLKI 458 (583)
Q Consensus 383 ~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l---~~~~~~~~~~~~~-~~~~~l~~ 458 (583)
+.|.+| -|+-||.+++ . +.+.+.+..-.--..++-++++..++...+ .++.+....++.- .+++.++.
T Consensus 251 laK~Lg-GG~PigA~la--~-----~~~~~~~~~G~HgSTfGGNpLacAv~~a~l~~l~~e~ll~~v~~~g~~~~~~L~~ 322 (404)
T COG4992 251 LAKALG-GGFPIGAMLA--T-----EEIASAFTPGDHGSTFGGNPLACAVALAVLEVLLEEGLLENVREKGEYLLQRLRE 322 (404)
T ss_pred eecccc-CCccceeeEE--c-----hhhhhcCCCCcccCCCCcCHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHH
Confidence 689999 8999999999 4 234444444333456677777777665554 4555444433332 33444444
Q ss_pred H
Q psy14428 459 L 459 (583)
Q Consensus 459 ~ 459 (583)
+
T Consensus 323 l 323 (404)
T COG4992 323 L 323 (404)
T ss_pred H
Confidence 4
|
|
| >COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.62 E-value=8.5e-06 Score=86.19 Aligned_cols=295 Identities=14% Similarity=0.093 Sum_probs=166.5
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhcc-C-CCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecC
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEK-N-LDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGI 238 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~-~-~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~ 238 (583)
.+...|||..|.-....|. ..|.|.+++++.++. . ....|... +-..++|+.+...... -..+.+++ ++
T Consensus 54 dG~~ylDf~sgi~v~~~GH--~hP~Vv~Av~~q~~~~~h~~~~~~~~----e~~v~~ae~L~~~~p~-~~~~~~~f--~~ 124 (447)
T COG0160 54 DGNEYLDFLSGIAVLNLGH--NHPRVVEAVKRQLAKLNHTHTRDLYY----EPYVELAEKLTALAPG-SGLKKVFF--GN 124 (447)
T ss_pred CCCEEEEcccCcchhccCC--CCHHHHHHHHHHHHHhhcccCCcccc----hhHHHHHHHHHHhCCc-ccCCeEEe--cC
Confidence 4556788888665555554 346777777765554 1 22333333 3334444444332111 03467888 99
Q ss_pred CchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHH-HHhhc-------------CCeEEEEecccCCC--CCCC------
Q psy14428 239 SGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVR-FCTDS-------------RLNVGAYRYFDNKT--NGLD------ 296 (583)
Q Consensus 239 G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~-~~~~~-------------G~~~~~v~~~d~~~--~g~d------ 296 (583)
+|++|.+.+..+.+.... ...|+...-+|..-.. .+... ...++.+|+.+... ++.+
T Consensus 125 sGaeA~E~AiKiAr~~Tg-r~~viaf~~afHG~T~galslT~~~~~~~~~~~~~~~~v~~~Pyp~~yr~p~~~~~~~~~~ 203 (447)
T COG0160 125 SGAEAVEAAIKIARAYTG-RPGVIAFDGAFHGRTLGALSLTGSKPPYKAGFGPLPPGVYHVPYPNPYRCPFGIGGEECGD 203 (447)
T ss_pred CcHHHHHHHHHHHHHHhC-CCcEEEECCcccccchhhHHhccCccccccCCCCCCCCeEEecCCccccCcccCchhhhhH
Confidence 999999998777666655 5678887777754322 21111 12256666632211 1111
Q ss_pred --hhhHHHHHHcC---CCCcEEEEeCCCCCCCC-CCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHH
Q psy14428 297 --FAGMMEDIKAM---PERSILFLQTSSHNPTG-VDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYF 370 (583)
Q Consensus 297 --~~~l~~~l~~~---~~~~~~i~i~~p~NPTG-~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~ 370 (583)
.+.++..+... ..+..++++-.-+.=-| .+.+++-++++.++|++||+++|.||+-..|...+ ....+..+
T Consensus 204 ~~~~~~e~~i~~~~~~~~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQtG~GRTG---~~fa~E~~ 280 (447)
T COG0160 204 DALEYIERALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGRTG---KMFAFEHF 280 (447)
T ss_pred HHHHHHHHHHHhhcCCCCceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCccc---cchhhhhc
Confidence 22233323222 33455566555566566 45677788999999999999999999999988765 23333332
Q ss_pred HHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhC---Chhhhhhhh
Q psy14428 371 AKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILS---DPKLKAQCD 447 (583)
Q Consensus 371 ~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~---~~~~~~~~~ 447 (583)
+-.+.+ -++||.+| .|+-+|.++. . +++.+..-.....+ ++-++++..++...|+ ++.+.++..
T Consensus 281 -gv~PDi---vt~aK~ig-~G~Pl~avv~--r-----~ei~~~~~g~~~~T-f~GNpva~Aaa~AvL~vie~e~L~~~a~ 347 (447)
T COG0160 281 -GVEPDI---VTLAKSLG-GGLPLSAVVG--R-----AEIMDWPPGGHGGT-FGGNPVACAAALAVLDVIEEENLLERAA 347 (447)
T ss_pred -CCCCCE---EEeccccc-CCCceeEEec--c-----HHhcccCCcccCCC-CCcCHHHHHHHHHHHHHHHHccHHHHHH
Confidence 112233 35799999 6999999999 5 46666333333333 5666666666665554 444444444
Q ss_pred hHHH-HHHHHHHHHhhc--cCCCccchhhHHHHhcCC
Q psy14428 448 ETER-IMSQLKILIRGF--YSNPPIHGARIVTEILSD 481 (583)
Q Consensus 448 ~~~~-~~~~l~~~~r~~--~~~~p~~g~~i~~~~l~~ 481 (583)
++-. +.+.+.++.... +...-..|.++-+++..+
T Consensus 348 ~~G~~l~~~L~~l~~~~~~IgdVRG~Glm~giE~v~d 384 (447)
T COG0160 348 ELGEYLRDRLEELQEKHPLIGDVRGLGLMIGVELVKD 384 (447)
T ss_pred HHHHHHHHHHHHHHhhcCceecccccceEEEEEEecC
Confidence 3332 333333332211 222233456666666543
|
|
| >PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=5.1e-06 Score=89.20 Aligned_cols=248 Identities=10% Similarity=0.006 Sum_probs=140.9
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
.+...||+..|.+....|.- .+.+.+++.+.+.......+ +. +.+..+|+.+....+ ...+++.. +++|
T Consensus 51 dG~~yiD~~~g~~~~~lGh~--~p~v~~ai~~q~~~~~~~~~-~~----~~~~~la~~L~~~~~--~~~~~v~f--~~SG 119 (433)
T PRK00615 51 LGKTFIDFCGSWGSLIHGHS--HPKICDAIQQGAERGTSYGL-TS----EQEILFAEELFSYLG--LEDHKIRF--VSSG 119 (433)
T ss_pred CCCEEEEcccchhccccCCC--CHHHHHHHHHHHHhCCCCCC-CC----HHHHHHHHHHHHhCC--CCcCEEEE--eCch
Confidence 45567888887776556643 46777777776654221111 22 233444544443221 11258899 9999
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHH----HhhcCCe------EEEEecccCC----CCCCChhhHHHHHHc
Q psy14428 241 SGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRF----CTDSRLN------VGAYRYFDNK----TNGLDFAGMMEDIKA 306 (583)
Q Consensus 241 ~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~----~~~~G~~------~~~v~~~d~~----~~g~d~~~l~~~l~~ 306 (583)
++|.+.+..+.+.... ...|+...-+|.+.... ....+.. ....+..... .+ -|.+.+++.+++
T Consensus 120 sEA~e~AiklAr~~tg-r~~ii~~~~~yHG~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~l~~~l~~ 197 (433)
T PRK00615 120 TEATMTAVRLARGITG-RSIIIKFLGCYHGHADTLLQGISFSETSLDTLTHLVDTDLAHPLTLSLPY-NDFQIFQTVMNS 197 (433)
T ss_pred HHHHHHHHHHHHHhhC-CCEEEEEcCccCCCCcccCcccccCCCCcCcCCCCCCCCCCCCCeEeCCC-CCHHHHHHHHHh
Confidence 9999988666555433 46788777777774311 1111100 0000000000 01 167788888865
Q ss_pred CCCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcc
Q psy14428 307 MPERSILFLQTSSHNPTGVD-LSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSK 385 (583)
Q Consensus 307 ~~~~~~~i~i~~p~NPTG~~-~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK 385 (583)
...+..++++-.-+.-.|.. .+++-+++|.++|++||+++|.||+...|..+. ......+ +-.+.++ +|||
T Consensus 198 ~~~~~aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~R~G~----~ga~~~~-gv~PDi~---~~gK 269 (433)
T PRK00615 198 LGHRVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVTGFRVAQ----GGAAAIY-HVKPDIT---VYGK 269 (433)
T ss_pred cCCceEEEEECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccccccccH----hHHHHhc-CCCCCeE---EEcc
Confidence 44444455443333333543 467889999999999999999999998774331 1111111 2122333 4899
Q ss_pred cccccCccceEEEEEcCCchhHHHHHHHHHHHH---hccccCCChHHHHHHHHHh
Q psy14428 386 NMGLYGERVGTFSVLTPTSDETERIMSQLKILI---RGFYSNPPIHGARIVTEIL 437 (583)
Q Consensus 386 ~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~---~~~~~~~s~~~q~~~~~~l 437 (583)
.+| .|+-+|++++ + +++++.+.... ....++.+++...++.+.+
T Consensus 270 ~lg-gG~p~~av~~--~-----~~i~~~~~~~~~~~~~~T~~g~p~~~aa~la~L 316 (433)
T PRK00615 270 ILG-GGLPAAAVVA--H-----KSIMDHLAPEGTIFQAGTLSGNPLAMAAGKASI 316 (433)
T ss_pred ccc-CCcceeeeee--c-----HHHHhhhcCCCCcccCCCCcccHHHHHHHHHHH
Confidence 998 7888999999 6 57888775321 1123334566655555544
|
|
| >COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.61 E-value=4.6e-06 Score=89.67 Aligned_cols=262 Identities=12% Similarity=0.046 Sum_probs=168.5
Q ss_pred CCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCC--C-
Q psy14428 181 YVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYP--G- 257 (583)
Q Consensus 181 ~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~--~- 257 (583)
.+++...+++...+..+. ..-.-..+..++.+.+..++.+-.+.+ ..-.=.+ |+||++|..++..+.+.... .
T Consensus 73 ~~~~~a~~~~~~~~~~nl-~d~~~~p~a~~~E~~~v~~l~~l~~~~-~~~~G~~--t~GgTean~lal~aar~~~~~~~~ 148 (460)
T COG0076 73 RVPPVAAELLVSALNKNL-GDPDESPAAAELEERVVNMLSDLLGAP-EEASGTF--TSGGTEANLLALLAARERWRKRAL 148 (460)
T ss_pred CCHHHHHHHHHHHHhhcC-CCcccChhHHHHHHHHHHHHHHHhCCC-CCCceEE--EcChHHHHHHHHHHHHHHHHHHhh
Confidence 355667777666665421 111112377899999999998876655 2223455 99999999877544433221 0
Q ss_pred --------CCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCH
Q psy14428 258 --------VKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSE 329 (583)
Q Consensus 258 --------gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~ 329 (583)
..+|+++.-....+...+...|+.+..+++ ++.+..+|++++++.+.+.+... +++-.-+.-||| +.
T Consensus 149 ~~~~~~~~~P~ii~s~~aH~s~~Kaa~~lG~~~~~v~~-~~~~~~id~~~l~~~i~~~t~~g-~vV~~aGtT~~G---~i 223 (460)
T COG0076 149 AESGKPGGKPNIVCSETAHFSFEKAARYLGLGLRRVPT-VPTDYRIDVDALEEAIDENTIGG-VVVGTAGTTDTG---SI 223 (460)
T ss_pred hcccccCCCCeEEecCcchhHHHHHHHHhCCCceeEEe-ccCccccCHHHHHHHHHhhccCc-eEEEEecCCCCC---cc
Confidence 126888887888888899999999999999 55468999999999996553322 366667777888 45
Q ss_pred HHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEE-EEecCcccccccCccceEEEEEcCCchhHH
Q psy14428 330 DQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLC-LAQSFSKNMGLYGERVGTFSVLTPTSDETE 408 (583)
Q Consensus 330 ~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi-~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~ 408 (583)
|.+++|.++|+++++++.+|-+|+.+...-.+... .+...-+.|. +.-|+-|.. +.=.-+||++. .+++
T Consensus 224 Ddi~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~~----~~~f~l~~vdSIt~d~HK~g-~aP~~~G~il~--rd~e--- 293 (460)
T COG0076 224 DDIEELADIAEEYGIWLHVDAAFGGFLLPFLEPDG----RWDFGLEGVDSITVDGHKYG-LAPIGCGVVLF--RDEE--- 293 (460)
T ss_pred CCHHHHHHHHHHcCCcEEEEccccceeecccCccc----hhhcCCCCceEEEECccccc-CCCCCceEEEE--ECHH---
Confidence 67888899999999999999999988753110111 1111223443 444788955 57788999999 7642
Q ss_pred HHHHHHHHHH---h-----ccc-----cCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHh
Q psy14428 409 RIMSQLKILI---R-----GFY-----SNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIR 461 (583)
Q Consensus 409 ~li~~l~~~~---~-----~~~-----~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r 461 (583)
.+.+.+.... . +.. .+...+.|++....+..+.+.+..++..+....+.+.++
T Consensus 294 ~l~~~~~~~~~yl~~~~~~~~ti~~sr~~~~~~~~~~~l~~lG~eGy~~l~~~~~~~a~~la~~l~ 359 (460)
T COG0076 294 ALRRILIFADYYLPGGGIPNFTILGSRPGRQALALYANLRRLGREGYRKLLDRTLELARYLAEELE 359 (460)
T ss_pred HhhhhhhcccccCCCCCcCceeEeeccchHHHHHHHHHHHHhCHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4554444221 1 111 111345566666777766777766665555555544443
|
|
| >COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.5e-05 Score=83.07 Aligned_cols=241 Identities=15% Similarity=0.097 Sum_probs=156.7
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
.+..-||+..+.=..-+|.. .|.|.+++++.++++ ..|..+ .++.-.+|+.+.+.. -..|.|-+ ++.+
T Consensus 51 DGn~YIDy~~~~Gp~ilGH~--~p~V~~Av~~~l~~G--~~fg~P---te~Ei~~Aell~~~~---p~~e~vrf--vnSG 118 (432)
T COG0001 51 DGNEYIDYVLGWGPLILGHA--HPAVVEAVQEQLERG--LSFGAP---TELEVELAELLIERV---PSIEKVRF--VNSG 118 (432)
T ss_pred CCCEeeehhccCcccccCCC--CHHHHHHHHHHHHhc--CCCCCC---CHHHHHHHHHHHHhc---CcccEEEE--ecch
Confidence 34455666544433334543 367889988888774 445433 244555556555432 12378999 9999
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhh-cC-------------C------eEEEEecccCCCCCCChhhH
Q psy14428 241 SGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTD-SR-------------L------NVGAYRYFDNKTNGLDFAGM 300 (583)
Q Consensus 241 ~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~-~G-------------~------~~~~v~~~d~~~~g~d~~~l 300 (583)
++|...+.++.+.+.. -|.|+..+=+|......+.. .| . .++.+|+. |++.+
T Consensus 119 TEAtmsAiRlARa~Tg-R~kIikF~G~YHG~~D~~lv~agsg~~t~g~p~s~Gvp~~~a~~ti~~~yN-------D~~al 190 (432)
T COG0001 119 TEATMSAIRLARAYTG-RDKIIKFEGCYHGHSDSLLVKAGSGAATLGSPSSPGVPADVAKHTLVLPYN-------DLEAL 190 (432)
T ss_pred hHHHHHHHHHHHHhhC-CCeEEEEcCCCCCCccHHHhhcCcCcccCCCCCCCCCChhhhccEEEecCC-------CHHHH
Confidence 9999888777777776 68999998888877554432 22 1 23344441 88999
Q ss_pred HHHHHcCCCC-cEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEE
Q psy14428 301 MEDIKAMPER-SILFLQTSSHNPTGV-DLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLC 378 (583)
Q Consensus 301 ~~~l~~~~~~-~~~i~i~~p~NPTG~-~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi 378 (583)
++.+++.... ..+|+=|-+.|= |. .-.++-++.|.++|+++++++|.||+--.|...- .. .+.+ ++-.=
T Consensus 191 ~~~~~~~g~~IAaVIvEPv~gn~-g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViTGFR~~~--gG---aq~~---~gi~P 261 (432)
T COG0001 191 EEAFEEYGDDIAAVIVEPVAGNM-GVVPPEPGFLEGLRELTEEHGALLIFDEVITGFRVAL--GG---AQGY---YGVEP 261 (432)
T ss_pred HHHHHHcCCcEEEEEeccccCCC-CCCCCCHHHHHHHHHHHHHcCcEEEEecchhhcccCC--cc---cccc---cCcCc
Confidence 9999877444 444444667773 44 3466778999999999999999999988877541 01 1111 11111
Q ss_pred EEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHH---hccccCCChHHHHHHHHHhC
Q psy14428 379 LAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILI---RGFYSNPPIHGARIVTEILS 438 (583)
Q Consensus 379 ~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~---~~~~~~~s~~~q~~~~~~l~ 438 (583)
=+-+|.|.+| -|+-+|.+.+ . .++++.+.... +.-..+-++++..+....++
T Consensus 262 DlttlGKiIG-GGlP~ga~gG--r-----~eiM~~~~p~g~vyqaGT~sgnplamaAG~atl~ 316 (432)
T COG0001 262 DLTTLGKIIG-GGLPIGAFGG--R-----AEIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLE 316 (432)
T ss_pred chhhhhhhhc-CCcceeeecc--H-----HHHHhhhCCCCCccccCCCCCcHHHHHHHHHHHH
Confidence 2456899999 9999999998 5 58888777543 22345566777666555543
|
|
| >PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=8.2e-06 Score=88.27 Aligned_cols=256 Identities=13% Similarity=0.047 Sum_probs=144.2
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccC-CCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCC
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKN-LDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGIS 239 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~-~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G 239 (583)
.+...+|+..|.+....|. ..+.+.+++.+.++.. ....|.. .+.+..+|+.+..... -..+++.+ +++
T Consensus 80 dG~~ylD~~~g~~~~~lGH--~~p~v~~Ai~~ql~~l~~~~~~~~----~~~~~~lae~L~~~~p--~~~~~v~f--~~S 149 (459)
T PRK11522 80 QGQEFIDCLGGFGIFNVGH--RNPVVVSAVQNQLAKQPLHSQELL----DPLRAMLAKTLAALTP--GKLKYSFF--CNS 149 (459)
T ss_pred CCCEEEECCcCHHhhhcCC--CCHHHHHHHHHHHhhCcccccccC----CHHHHHHHHHHHHhCC--CCCCEEEE--eCC
Confidence 3556788877766655664 3467777777766541 1122222 3444455555543221 11257888 999
Q ss_pred chhHHHHHHHHHHHhCC-C-CCEEEEcCCCChhhHHHHh-hcCCe------------EEEEecccCCCCCCChhhHHHHH
Q psy14428 240 GSGSLRVGTAFLERFYP-G-VKTVYFPTPTWNGHVRFCT-DSRLN------------VGAYRYFDNKTNGLDFAGMMEDI 304 (583)
Q Consensus 240 ~~~al~l~~~~l~~~~~-~-gd~Vlv~~P~y~~~~~~~~-~~G~~------------~~~v~~~d~~~~g~d~~~l~~~l 304 (583)
|++|.+.+..+.+.... . ...|+...-+|.+...... ..|-. +..+|+ -|.+.+++.+
T Consensus 150 GsEAve~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~l 222 (459)
T PRK11522 150 GTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVPF-------GNIEAMRTAL 222 (459)
T ss_pred chHHHHHHHHHHHHHhccCCCcEEEEecCCCCCCcHHHhhhcCCcccccCCCCCCCCCcccCC-------CCHHHHHHHH
Confidence 99999988766655542 1 2367777777776543222 22211 111221 1566777776
Q ss_pred HcC---CCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEE
Q psy14428 305 KAM---PERSILFLQTSSHNPTGVD-LSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLA 380 (583)
Q Consensus 305 ~~~---~~~~~~i~i~~p~NPTG~~-~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i 380 (583)
+.. ..+..++++-.-+-=.|.. .+++-++++.++|++||+++|.||+...|...+ .......+ +-.+.++
T Consensus 223 ~~~~~~~~~iAavIvEpv~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG---~~~a~e~~-gv~PDiv-- 296 (459)
T PRK11522 223 SECKKTGDDVAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTG---KMFACEHE-NVQPDIL-- 296 (459)
T ss_pred HHhhccCCcEEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEeccceecCCccc---hhhhhhcc-CCCCCEE--
Confidence 532 2333444443333334553 567789999999999999999999997764333 11122211 1122333
Q ss_pred ecCcccccccC-ccceEEEEEcCCchhHHHHHHHHHHH--HhccccCCChHHHHHHHH---HhCChhhhhhhhh
Q psy14428 381 QSFSKNMGLYG-ERVGTFSVLTPTSDETERIMSQLKIL--IRGFYSNPPIHGARIVTE---ILSDPKLKAQCDE 448 (583)
Q Consensus 381 ~S~SK~~~l~G-lRiG~lv~~~p~~~~~~~li~~l~~~--~~~~~~~~s~~~q~~~~~---~l~~~~~~~~~~~ 448 (583)
+|+|.+| .| +-+|.+++ . +++++.+... .-...++.++++..++.+ .++++.+..+..+
T Consensus 297 -t~gK~lg-gG~~Pigav~~--~-----~~i~~~~~~~~~~~~~T~~gnp~~~Aaala~L~~i~~~~l~~~~~~ 361 (459)
T PRK11522 297 -CLAKALG-GGVMPIGATIA--T-----EEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQ 361 (459)
T ss_pred -Eechhhh-CCCccceeEEE--c-----HHHHHHhccCCcccCCCCCCCHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 7899998 77 68999999 5 4677665421 112233445655555444 4444444444333
|
|
| >PRK15029 arginine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.7e-06 Score=94.73 Aligned_cols=177 Identities=12% Similarity=0.067 Sum_probs=118.5
Q ss_pred CCCC-CHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeE
Q psy14428 204 NIGG-DAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNV 282 (583)
Q Consensus 204 ~~~G-~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~ 282 (583)
.+.| +.+-.+..|+.++.. .-.++ ++|++.++.. ++..++.+||.|+++.-+.-.....+...|+++
T Consensus 202 ~p~G~I~eAq~~aA~~fgA~-------~t~Fl--vNGST~gn~a---~i~a~~~~gd~Vlv~RN~HKSv~~al~L~ga~P 269 (755)
T PRK15029 202 DHTGAFGESEKYAARVFGAD-------RSWSV--VVGTSGSNRT---IMQACMTDNDVVVVDRNCHKSIEQGLILTGAKP 269 (755)
T ss_pred CCCcHHHHHHHHHHHHhCCC-------cEEEE--eCChhHHHHH---HHHHhcCCCCEEEeecccHHHHHHHHHHcCCeE
Confidence 3444 456666666666542 35666 9999999986 455577779999999999999989999999999
Q ss_pred EEEecccCCCC----CCC-----hhhHHHHHHcCCC-------CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEE
Q psy14428 283 GAYRYFDNKTN----GLD-----FAGMMEDIKAMPE-------RSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYP 346 (583)
Q Consensus 283 ~~v~~~d~~~~----g~d-----~~~l~~~l~~~~~-------~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~i 346 (583)
++++. .-+.+ +++ ++.+++++++.+. +.+++++++|.- -|.+.+. ++|++.|.+++++|
T Consensus 270 vyl~P-~~~~~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PTY-~Gv~~di---~~I~~~~h~~~~~l 344 (755)
T PRK15029 270 VYMVP-SRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTY-DGVCYNA---KEAQDLLEKTSDRL 344 (755)
T ss_pred EEecc-cccccCCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECCCC-cceeeCH---HHHHHHHHhcCCeE
Confidence 99854 21222 334 7888888866422 223666655533 4888874 56688899999999
Q ss_pred EEeccCCC-CCCCCCCCchHHHHHHH-H-hcCcEEEEecCcccccccCccceEEEE
Q psy14428 347 FFDMAYLG-LTSGDFDKDAFSLRYFA-K-EVGQLCLAQSFSKNMGLYGERVGTFSV 399 (583)
Q Consensus 347 I~De~Y~~-l~~~~~~~~~~~~~~~~-~-~~~~vi~i~S~SK~~~l~GlRiG~lv~ 399 (583)
++||||+. |.|.+......++..-. . .+..++++.|.-|++ |++.-|.++-
T Consensus 345 lvDEAhGah~~F~~~~p~~sa~~~~~~~~~Gad~~vvqStHKtL--~alTQaS~LH 398 (755)
T PRK15029 345 HFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLL--NALSQASYIH 398 (755)
T ss_pred EEECccccccccCccccccccccccccccCCCceEEEEchhhcc--cchhhhhhhe
Confidence 99999864 44543111011110000 1 223469999999997 6787775544
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.7e-06 Score=98.54 Aligned_cols=164 Identities=8% Similarity=0.080 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCeEEEecCCch----hHHHHHHHHHHHhC-CCCC----EEEEcCCCChhhHHHHhhcC
Q psy14428 209 AKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGS----GSLRVGTAFLERFY-PGVK----TVYFPTPTWNGHVRFCTDSR 279 (583)
Q Consensus 209 ~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~----~al~l~~~~l~~~~-~~gd----~Vlv~~P~y~~~~~~~~~~G 279 (583)
.++|+.++++.+ . ++|.+ +++++ .++.++ ++.+. ++|| .|+++..........+...|
T Consensus 571 ~~~r~~la~i~g----~----~~v~f--~pnaga~ge~a~~~v---i~~~~~~~Gd~~r~~vli~~~aH~sn~a~a~~~G 637 (993)
T PLN02414 571 EDLGDLLCEITG----F----DSFSL--QPNAGAAGEYAGLMV---IRAYHLSRGDHHRNVCIIPVSAHGTNPASAAMCG 637 (993)
T ss_pred HHHHHHHHHHhC----C----CeEEE--cCCCcHHHHHHHHHH---HHHHHhccCCCCCCEEEeCCCcCccCHHHHHHCC
Confidence 356666666653 2 78988 77777 566664 33344 4477 89999888777777888899
Q ss_pred CeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCC
Q psy14428 280 LNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGD 359 (583)
Q Consensus 280 ~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~ 359 (583)
++++.+|+ |+ ++.+|++++++.+...+++++++++.+|+|-+|...+ +++|.++|+++|++++.|-+..--...-
T Consensus 638 ~~vv~v~~-d~-~G~vDle~L~~~i~~~~~~ta~V~vt~pSn~gg~e~~---I~eI~~iah~~Galv~vDgAq~~a~~~l 712 (993)
T PLN02414 638 MKIVVVGT-DA-KGNINIEELRKAAEAHKDNLAALMVTYPSTHGVYEEG---IDEICDIIHDNGGQVYMDGANMNAQVGL 712 (993)
T ss_pred CEEEEecc-CC-CCCcCHHHHHHHHhccCCCeEEEEEECCCccccccch---HHHHHHHHHHcCCEEEEEecCHHhccCc
Confidence 99999999 54 4689999999999654467899999999999987754 6777888999999999999972211000
Q ss_pred CCCchHHHHHHHHhcCcEEEEecCcccccc----cCccceEEEE
Q psy14428 360 FDKDAFSLRYFAKEVGQLCLAQSFSKNMGL----YGERVGTFSV 399 (583)
Q Consensus 360 ~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l----~GlRiG~lv~ 399 (583)
.. +...+--++..|.-|+|+. -|=-+|.+.+
T Consensus 713 --------~~-p~~~GaD~~~~s~HK~f~~P~G~GGPg~G~l~~ 747 (993)
T PLN02414 713 --------TS-PGFIGADVCHLNLHKTFCIPHGGGGPGMGPIGV 747 (993)
T ss_pred --------CC-ccccCCCEEEecCCccCCcCcccCCCCeeeEEE
Confidence 00 1123445777788897752 2344788877
|
|
| >PRK05639 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=2e-05 Score=85.25 Aligned_cols=250 Identities=12% Similarity=0.089 Sum_probs=139.7
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCC--CCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecC
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNL--DHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGI 238 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~--~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~ 238 (583)
.+...+|+..|.+....|.- .+.+.+++.+.+++.. ...|... +.+..+++.+..... ...+++.+ ++
T Consensus 51 dG~~ylD~~~g~~~~~lGh~--~p~i~~Ai~~ql~~~~~~~~~~~~~----~~~~~lae~L~~~~p--~~~~~v~f--~~ 120 (457)
T PRK05639 51 DGNVFIDFLAGAAAASTGYS--HPKLVKAVQEQVALIQHSMIGYTHS----ERAIRVAEKLAEISP--IENPKVLF--GL 120 (457)
T ss_pred CCCEEEECCcCHHhhccCCC--CHHHHHHHHHHHHhccccccCccCC----HHHHHHHHHHHhhCC--CCcCEEEE--eC
Confidence 45567888888766666653 4677777776665411 1122222 333344444443221 12258999 99
Q ss_pred CchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHH-HhhcC--------C-----eEEEEecccCCC--CC----CChh
Q psy14428 239 SGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRF-CTDSR--------L-----NVGAYRYFDNKT--NG----LDFA 298 (583)
Q Consensus 239 G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~-~~~~G--------~-----~~~~v~~~d~~~--~g----~d~~ 298 (583)
+|++|.+.+..+.+.... ...|+...-+|.+.... ....| . .++.+|..+... ++ -+.+
T Consensus 121 SGsEA~e~AlklAr~~tg-r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 199 (457)
T PRK05639 121 SGSDAVDMAIKVSKFSTR-RPWILAFIGAYHGQTLGATSVAAFQSSQKRGFSPLMPNVVWIPYPNPYRNPWGINGYEEPD 199 (457)
T ss_pred chHHHHHHHHHHHHHhcC-CCeEEEECCCcCCccHHHHHHcCCCcccccCCCCCCCCceEeCCCccccccccccccCCHH
Confidence 999999988666655543 56788888887764322 11111 0 133444421100 00 0122
Q ss_pred --------hHHHHHHc---CCCCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHH
Q psy14428 299 --------GMMEDIKA---MPERSILFLQTSSHNPTGV-DLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFS 366 (583)
Q Consensus 299 --------~l~~~l~~---~~~~~~~i~i~~p~NPTG~-~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~ 366 (583)
.+++.+.. ...+..++++---+--.|. ..+++-+++|.++|+++++++|.||+...|...+ ....
T Consensus 200 ~~~~~~~~~le~~l~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG---~~~a 276 (457)
T PRK05639 200 ELINRFLDYLENYVFSHVVPPDEVAALFAEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQTGIGRTG---KWFA 276 (457)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCcCc---hHHH
Confidence 23333221 1334555555444444565 4578899999999999999999999998874433 1112
Q ss_pred HHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHh
Q psy14428 367 LRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEIL 437 (583)
Q Consensus 367 ~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l 437 (583)
...+ +-.+.+++ |+|.++ .|+-+|.+++ . +++++..... ....++.++++..++.+.+
T Consensus 277 ~~~~-gv~PDiv~---~gK~l~-gG~pi~av~~--~-----~~i~~~~~~~-~~~T~~g~p~~~aaa~a~l 334 (457)
T PRK05639 277 SEWF-EVKPDLII---FGKGVA-SGMGLSGVIG--R-----KELMDLTSGS-ALLTPAANPVISAAAEATL 334 (457)
T ss_pred HHhc-CCCCCEEE---echhhc-CCCcceeEEe--h-----HHHHhhcCCC-cccCCCcCHHHHHHHHHHH
Confidence 2211 22233444 799998 7899999999 5 4677622111 1123445555555554444
|
|
| >PRK06062 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.3e-05 Score=84.73 Aligned_cols=264 Identities=11% Similarity=0.036 Sum_probs=147.4
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
.+...+|+..|.+....|.- .|.+.+++.+.++.. ..+.+.. ..+.+..+|+.+..... -..+++.+ +++|
T Consensus 51 dG~~ylD~~~g~~~~~lGh~--~p~v~~Ai~~q~~~~--~~~~~~~-~~~~~~~lae~L~~~~p--~~~~~v~f--~~SG 121 (451)
T PRK06062 51 EGRRYLDFSSQLVNTNIGHQ--HPKVVAAIQEQAARL--CTVAPAH-ANDARSEAARLIAERAP--GDLSKVFF--TNGG 121 (451)
T ss_pred CCCEEEEcccCHHhhcCCCC--CHHHHHHHHHHHHhc--CCcCCcc-CCHHHHHHHHHHHHhCC--CCCCEEEE--cCCh
Confidence 45677898888776666653 366777776666541 1111111 22344455555543211 11368999 9999
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhh-cCC-----------eEEEEecccCCC--CC--CC-------h
Q psy14428 241 SGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTD-SRL-----------NVGAYRYFDNKT--NG--LD-------F 297 (583)
Q Consensus 241 ~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~-~G~-----------~~~~v~~~d~~~--~g--~d-------~ 297 (583)
++|.+.+..+.+.... ..+|+...-+|......... .|. .+..++..+... ++ -| +
T Consensus 122 sEAve~AlklAr~~tg-r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 200 (451)
T PRK06062 122 ADANEHAVRMARLHTG-RPKVLSAYRSYHGGTGSAINLTGDPRRWPNDTGRAGVVHFFGPFLYRSEFHATTEEEECERAL 200 (451)
T ss_pred HHHHHHHHHHHHHhhC-CceEEEEeCCCCCCCHHHHhhcCCcccccCCCCCCCCEEeCCCCccccccCCCChHHHHHHHH
Confidence 9999988666555433 46788887777665332221 111 112222110000 00 01 4
Q ss_pred hhHHHHHHcCC-CCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcC
Q psy14428 298 AGMMEDIKAMP-ERSILFLQTSSHNPTGVD-LSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVG 375 (583)
Q Consensus 298 ~~l~~~l~~~~-~~~~~i~i~~p~NPTG~~-~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~ 375 (583)
+.+++.++... .+..++++-.-+.--|.+ .+++-+++|.++|+++|+++|.||+...|...+ .......+ +-.+
T Consensus 201 ~~le~~l~~~~~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG---~~~a~~~~-gv~P 276 (451)
T PRK06062 201 AHLERVIELEGPSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTG---KWFAIEHF-GVVP 276 (451)
T ss_pred HHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeeccccCCCcCc---HHHHHHhc-CCCC
Confidence 56666665332 333444443223223544 578899999999999999999999998874333 11122221 2122
Q ss_pred cEEEEecCcccccccCc-cceEEEEEcCCchhHHHHHHHHHHH--HhccccCCChHHHHHHHHHh---CChhhhhhhhhH
Q psy14428 376 QLCLAQSFSKNMGLYGE-RVGTFSVLTPTSDETERIMSQLKIL--IRGFYSNPPIHGARIVTEIL---SDPKLKAQCDET 449 (583)
Q Consensus 376 ~vi~i~S~SK~~~l~Gl-RiG~lv~~~p~~~~~~~li~~l~~~--~~~~~~~~s~~~q~~~~~~l---~~~~~~~~~~~~ 449 (583)
. +-+|+|.++ .|+ -+|.+++ . +++++.+... .....++.++++..++.+.| +++.+.++..+.
T Consensus 277 D---i~t~gK~lg-gG~~Pigav~~--~-----~~i~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~l~~~~l~~~~~~~ 345 (451)
T PRK06062 277 D---LITFAKGVN-SGYVPLGGVAI--S-----EAIAATFADRPYPGGLTYSGHPLACAAAVATINAMEEEGIVENAARI 345 (451)
T ss_pred C---eeeechhhh-cCCcCcEEEEE--c-----HHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 3 446899998 784 8999998 6 4777777532 12224455566666555544 344444444443
|
|
| >PRK07046 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.00011 Score=79.44 Aligned_cols=238 Identities=9% Similarity=0.007 Sum_probs=141.0
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
.+...||+..|......|.- .|.+.+++.+.++......+ +. +....+|+.+.+.. ..+++.+ +++|
T Consensus 73 DG~~yiD~~~g~g~~~lGh~--~p~i~~Av~~q~~~~~~~~~-~~----~~~~~lAe~l~~~~----~~~~v~F--~nSG 139 (453)
T PRK07046 73 DGHRYDDFCLGDTGAMFGHS--PAPVARALAEQARRGLTTML-PS----EDAAWVGEELARRF----GLPYWQV--ATTA 139 (453)
T ss_pred CCCEEEEecccccccccCCC--CHHHHHHHHHHHHhCCCCCC-CC----HHHHHHHHHHHHHh----CCCEEEE--ECCH
Confidence 45567888777665555543 36777777777765322222 22 34444555554332 2478999 9999
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHH--Hhh-c----------CC------eEEEEecccCCCCCCChhhHH
Q psy14428 241 SGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRF--CTD-S----------RL------NVGAYRYFDNKTNGLDFAGMM 301 (583)
Q Consensus 241 ~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~--~~~-~----------G~------~~~~v~~~d~~~~g~d~~~l~ 301 (583)
++|.+.+..+.+.... .+.|+..+-+|.+.... ... . |. .+..+|+ + |++.++
T Consensus 140 tEA~e~AlrlAR~~TG-r~~ii~~~g~YHG~~d~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~------n-d~~~l~ 211 (453)
T PRK07046 140 TDANRFVLRWARAVTG-RPKILVFNGCYHGTVDDVFVDLVDGRPVQRPGLLGQVHDLTATTRVVEF------N-DLAALE 211 (453)
T ss_pred HHHHHHHHHHHHHhhC-CCEEEEECCCCCCCcHHhHhhccCCCCCCCCCCCCCCccccCceEeeCC------C-CHHHHH
Confidence 9999988777666544 57788888778775321 110 0 10 1111221 1 678888
Q ss_pred HHHHcCCCCcEEEEe-CCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEE
Q psy14428 302 EDIKAMPERSILFLQ-TSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLA 380 (583)
Q Consensus 302 ~~l~~~~~~~~~i~i-~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i 380 (583)
+.+. ..+..++++ |-..|---...+++-++++.++|+++|+++|.||+.. |..+- .. .....+-.+.++
T Consensus 212 ~~l~--~~~vAavi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV~t-fr~g~--Gg---~~~~~gv~PDi~-- 281 (453)
T PRK07046 212 AALA--DGDVAAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHT-ISSGP--GG---YTRAHGLEPDFL-- 281 (453)
T ss_pred HHhC--CCCeEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEcccc-CccCC--cc---hhHHhCCCccce--
Confidence 7773 233444444 3333322244567889999999999999999999976 54321 01 111112222333
Q ss_pred ecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHH---------hccccCCChHHHHHHHHHhC
Q psy14428 381 QSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILI---------RGFYSNPPIHGARIVTEILS 438 (583)
Q Consensus 381 ~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~---------~~~~~~~s~~~q~~~~~~l~ 438 (583)
+|+|.+| .|+-+|.+++ . +++++.+.... ....++.++++..++...|+
T Consensus 282 -t~gK~lg-gG~Pi~av~g--~-----~~i~~~~~~~~~~~~~~~~~~~~T~~gnpl~~aa~~a~L~ 339 (453)
T PRK07046 282 -VVGKPIA-GGVPCAVYGF--S-----AELAERAQAAKASAPPGHSGIGTTLSANALAMAAMRATLA 339 (453)
T ss_pred -eehhhhc-CCCcceeeee--h-----HHHHHHHhhccccCCCCCceeCCCCcccHHHHHHHHHHHH
Confidence 5799998 8999999998 5 57887775321 11234556677666555543
|
|
| >PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.3e-05 Score=86.01 Aligned_cols=254 Identities=9% Similarity=-0.007 Sum_probs=144.5
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCC-CHHHHHHHHHHHhCCCCCCCCCCCeEEEecCC
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGG-DAKFCKLAAQLAYGEDFPAFKDNRLAIVQGIS 239 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G-~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G 239 (583)
.+...+|+..|.+....|.- .|.+.+++.+.+++. .|....+ ..+.+..+|+.+.+... -..+++.. +++
T Consensus 41 dG~~ylD~~~g~~~~~lGh~--~p~i~~Ai~~q~~~~---~~~~~~~~~~~~~~~la~~L~~~~p--~~~~~v~f--~~S 111 (428)
T PRK07986 41 DGRRLVDGMSSWWAAIHGYN--HPQLNAAMKSQIDAM---SHVMFGGITHPPAIELCRKLVAMTP--QPLECVFL--ADS 111 (428)
T ss_pred CCCEEEEcchhHHhhcCCCC--CHHHHHHHHHHHhhc---CCccccccCCHHHHHHHHHHHhhCC--CCcCEEEE--eCC
Confidence 45677899888877666653 377888877766541 1111111 22345555666654321 12368999 999
Q ss_pred chhHHHHHHHHHHHhC----CCCCEEEEcCCCChhhHHH-HhhcCC-------------eEEEEecccCCC---C-CCCh
Q psy14428 240 GSGSLRVGTAFLERFY----PGVKTVYFPTPTWNGHVRF-CTDSRL-------------NVGAYRYFDNKT---N-GLDF 297 (583)
Q Consensus 240 ~~~al~l~~~~l~~~~----~~gd~Vlv~~P~y~~~~~~-~~~~G~-------------~~~~v~~~d~~~---~-g~d~ 297 (583)
|++|.+.+..+.+... .+..+|+...-+|.+.... +...+. .++.+|..+... + .-|+
T Consensus 112 GsEAve~AlklAr~~~~~~g~~r~kii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~d~ 191 (428)
T PRK07986 112 GSVAVEVAMKMALQYWQAKGEPRQRFLTLRHGYHGDTFGAMSVCDPDNSMHSLYKGYLPENLFAPAPQSRFDGEWDERDI 191 (428)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCcCCCcHhhhcccCCchhhhhccCCCCCCCEEECCCCcccchhhHHHHH
Confidence 9999998766655441 2236788888888764321 111111 112222210000 0 0145
Q ss_pred hhHHHHHHcCCCCcEEEEeCC-CCCCCCC-CCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcC
Q psy14428 298 AGMMEDIKAMPERSILFLQTS-SHNPTGV-DLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVG 375 (583)
Q Consensus 298 ~~l~~~l~~~~~~~~~i~i~~-p~NPTG~-~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~ 375 (583)
+.+++.++...++..++++-. .+.-.|. ..+++-+++|.++|+++++++|.||+...|...+ .......+ +-.+
T Consensus 192 ~~l~~~l~~~~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~tG~GrtG---~~fa~~~~-gv~P 267 (428)
T PRK07986 192 APFARLMAAHRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTG---KLFACEHA-GIAP 267 (428)
T ss_pred HHHHHHHHhCCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCC---Ceeeeccc-CCCC
Confidence 667777754434444555433 2444454 4567899999999999999999999997774333 11111111 1122
Q ss_pred cEEEEecCcccccccC-ccceEEEEEcCCchhHHHHHHHHHHHH-----hccccCCChHHHHHHHHHhC
Q psy14428 376 QLCLAQSFSKNMGLYG-ERVGTFSVLTPTSDETERIMSQLKILI-----RGFYSNPPIHGARIVTEILS 438 (583)
Q Consensus 376 ~vi~i~S~SK~~~l~G-lRiG~lv~~~p~~~~~~~li~~l~~~~-----~~~~~~~s~~~q~~~~~~l~ 438 (583)
.++ +|+|.++ .| +-+|.+++ + +++++.+.... ....++.++++..++.+.++
T Consensus 268 Di~---t~gK~l~-gG~~p~~av~~--~-----~~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~L~ 325 (428)
T PRK07986 268 DIL---CLGKALT-GGTMTLSATLT--T-----REVAETISNGEAGCFMHGPTFMGNPLACAVANASLS 325 (428)
T ss_pred CEE---Eechhhh-CCcccCcchhc--h-----HHHHHHhhcCCCCccccCCCCCcCHHHHHHHHHHHH
Confidence 333 5899997 78 58888888 5 57888776421 12233456666666555443
|
|
| >PTZ00094 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.3e-05 Score=87.06 Aligned_cols=204 Identities=15% Similarity=0.084 Sum_probs=118.2
Q ss_pred CCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCC---CCC---CHH----HHHHHHHHHhCCCCCCCCCCC
Q psy14428 162 HPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYAN---IGG---DAK----FCKLAAQLAYGEDFPAFKDNR 231 (583)
Q Consensus 162 ~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~---~~G---~~~----Lr~aia~~~~~~~g~~~~~~~ 231 (583)
....++|-..+.. .++.+.+++...+.+....+|+. ..| ... .|+.++++++ .++++
T Consensus 33 ~~~~l~l~~sen~-------~s~~v~~~~~~~l~~~y~~g~p~s~~~~g~~~~~~iE~~ar~~~a~lf~------a~~~~ 99 (452)
T PTZ00094 33 QIEGLELIASENF-------TSRAVLECLGSCFTNKYAEGLPGNRYYGGNEVVDKIENLCQKRALEAFG------LDPEE 99 (452)
T ss_pred HHcCeeEeccccc-------CCHHHHHHhcchhhccccCCCCCccccccchHHHHHHHHHHHHHHHHhC------CCccc
Confidence 3456777666643 45778888776664321112221 122 122 3456666664 24566
Q ss_pred eEE-EecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhh----------cCCeEEEEecccCCCCCCChhhH
Q psy14428 232 LAI-VQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTD----------SRLNVGAYRYFDNKTNGLDFAGM 300 (583)
Q Consensus 232 I~i-~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~----------~G~~~~~v~~~d~~~~g~d~~~l 300 (583)
+.+ ++.++++++...+ +..+..+||.|++....+......... .+.+++.++. +.+ +.+|++.+
T Consensus 100 ~~~~~~~~sgt~an~~v---~~al~~~gd~Ii~~~~ehg~~l~~~~~l~~~~~~~~~~~~~~~~~~~-~~~-g~id~~~L 174 (452)
T PTZ00094 100 WGVNVQPYSGSPANFAV---YTALLQPHDRIMGLDLPSGGHLTHGFYTAKKKVSATSIYFESLPYQV-NEK-GLIDYDKL 174 (452)
T ss_pred ceeecCCCchHHHHHHH---HHHhcCCCCEEEecccccCCcccccccccccccccceeeeeeeeccc-CCC-CCcCHHHH
Confidence 544 1126788887774 344566799999976665544332211 1133445555 433 68899999
Q ss_pred HHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEE
Q psy14428 301 MEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLA 380 (583)
Q Consensus 301 ~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i 380 (583)
++.++.. +++++++. ++.+|...+.++ |.++|+++|+++++|++..--..... ....++ .+--+++
T Consensus 175 ~~~l~~~--~~~lvi~~--~s~~g~~~di~~---I~~i~~~~ga~l~vDaaq~~G~i~~~-~~~~~~------~~~D~l~ 240 (452)
T PTZ00094 175 EELAKAF--RPKLIIAG--ASAYPRDIDYKR---FREICDSVGAYLMADIAHTSGLVAAG-VLPSPF------PYADVVT 240 (452)
T ss_pred HHHHHHh--CCCEEEEe--CCCCCCccCHHH---HHHHHHHcCCEEEEeccchhccccCC-CCCCCC------CCCcEEE
Confidence 9988542 34455543 334898887554 46778899999999999754332210 000011 1234789
Q ss_pred ecCcccccccCccceEEEE
Q psy14428 381 QSFSKNMGLYGERVGTFSV 399 (583)
Q Consensus 381 ~S~SK~~~l~GlRiG~lv~ 399 (583)
.|..|++ .|-+-|++++
T Consensus 241 ~S~hK~l--~GP~Gg~l~~ 257 (452)
T PTZ00094 241 TTTHKSL--RGPRSGLIFY 257 (452)
T ss_pred cCCccCC--CCCCceEEEE
Confidence 9999987 3444588887
|
|
| >cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.2e-06 Score=87.85 Aligned_cols=191 Identities=11% Similarity=-0.010 Sum_probs=117.6
Q ss_pred CCCChHHHHHHHHHhccC---CCCCCCCC-------CCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCC-chhHHHHHH
Q psy14428 180 PYVLPSVKEAERRIYEKN---LDHEYANI-------GGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGIS-GSGSLRVGT 248 (583)
Q Consensus 180 p~~~~~v~~a~~~~~~~~---~~~~Y~~~-------~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G-~~~al~l~~ 248 (583)
...++.|.+++.+.+.+. ....|... .-+.+.|+.++++++. -++++|++ |+| ++++++.++
T Consensus 8 ~~~p~~V~~a~~~~~~~~~~~~rg~~~~~~r~~~~~~~~~~~r~~l~~l~~~-----~~~~~vvf--~~gs~T~a~~~~~ 80 (355)
T cd00611 8 AALPEEVLEQAQKELLDFNGLGMSVMEMSHRSKDFEAIVNEAESDLRELLNI-----PDNYKVLF--LQGGATGQFAAVP 80 (355)
T ss_pred CCCCHHHHHHHHHHHhhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCC-----CCCceEEE--EcCCchHHHHHHH
Confidence 336788888887765320 01112222 2246778888888852 13578999 988 999999963
Q ss_pred HHHHHhCC---CCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCC-ChhhHH-HHHHcCCCCcEEEEeCCCCCCC
Q psy14428 249 AFLERFYP---GVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGL-DFAGMM-EDIKAMPERSILFLQTSSHNPT 323 (583)
Q Consensus 249 ~~l~~~~~---~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~-d~~~l~-~~l~~~~~~~~~i~i~~p~NPT 323 (583)
..+.. +||.|++ .|.......+++..|++++.++. ++. .+. +...++ ..+ .++++++.++...|.|
T Consensus 81 ---~~l~~~~~~~~~i~~-g~~~~~~~~~a~~~g~~~~~~~~-~~~-g~~~~~~~~~~~~~---~~~~~lV~~~h~~t~t 151 (355)
T cd00611 81 ---LNLLGDKGTADYVVT-GAWSAKAAKEAKRYGGVVVIVAA-KEE-GKYTKIPDVETWDL---APDAAYVHYCSNETIH 151 (355)
T ss_pred ---HhcCCCCCeEEEEEC-CHHHHHHHHHHHhcCCCcEEEec-ccc-cCCCCCCCHhhcCC---CCCCCEEEEeCCcccc
Confidence 33343 3555543 33333344477888999998887 432 112 322222 222 5678899999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCC
Q psy14428 324 GVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPT 403 (583)
Q Consensus 324 G~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~ 403 (583)
|..+. ++++.+|+++++|-+-.--... ..+.. .+ +.+.|--|.+|.+| +|.+++ .
T Consensus 152 G~~~~--------~i~~~~g~~~~VDa~qs~g~~~------idv~~----~~--~~~ss~~K~lGP~G--~g~l~~--~- 206 (355)
T cd00611 152 GVEFD--------EVPDTGGVPLVADMSSNILSRP------IDVSK----FG--VIYAGAQKNLGPAG--VTVVIV--R- 206 (355)
T ss_pred cEEcc--------eecccCCCeEEEEccccccCCC------CCHHH----hC--EEEeecccccCCCc--eEEEEE--C-
Confidence 99743 3445599999999985433221 11222 22 35566789998776 588888 5
Q ss_pred chhHHHHHHHHH
Q psy14428 404 SDETERIMSQLK 415 (583)
Q Consensus 404 ~~~~~~li~~l~ 415 (583)
+++++++.
T Consensus 207 ----~~~~~~~~ 214 (355)
T cd00611 207 ----KDLLGKAR 214 (355)
T ss_pred ----HHHHhhcc
Confidence 45665544
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine. |
| >PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=5.6e-05 Score=81.78 Aligned_cols=254 Identities=9% Similarity=0.009 Sum_probs=144.8
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCC-CCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCC
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANI-GGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGIS 239 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~-~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G 239 (583)
.+...+|+..|.+....|.- .+.+.+++.+.+++. .|... .-..+.+..+|+.+.+..+. .-+++.+ +++
T Consensus 52 dG~~ylD~~~g~~~~~lGh~--~p~v~~Ai~~ql~~~---~~~~~~~~~~~~~~~lAe~L~~~~p~--~~~~v~f--~~s 122 (453)
T PRK06943 52 DGRRYLDAISSWWVNLFGHA--NPRINAALKDQLDTL---EHAMLAGCTHEPAIELAERLAALTGG--TLGHAFF--ASD 122 (453)
T ss_pred CCCEEEEcchHHHHhcCCCC--CHHHHHHHHHHHHhc---CCccccccCCHHHHHHHHHHHHhCCC--CCCEEEE--eCC
Confidence 45677899888776666653 367777777666541 11111 01123444555555432211 1258899 999
Q ss_pred chhHHHHHHHHHHHh-----CCCCCEEEEcCCCChhhHH-HHhhcCC------------eEEEEecccCCC--CCC----
Q psy14428 240 GSGSLRVGTAFLERF-----YPGVKTVYFPTPTWNGHVR-FCTDSRL------------NVGAYRYFDNKT--NGL---- 295 (583)
Q Consensus 240 ~~~al~l~~~~l~~~-----~~~gd~Vlv~~P~y~~~~~-~~~~~G~------------~~~~v~~~d~~~--~g~---- 295 (583)
|++|.+.+..+.+.. .....+|+...-+|..... .+...|. .+..+|..+... .+.
T Consensus 123 GseAve~AlKlA~~~~~~rg~~~r~~Ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 202 (453)
T PRK06943 123 GASAVEIALKMSFHAWRNRGRGDKREFVCLANGYHGETIGALGVTDVALFKDAYDPLIRHAHVVASPDARGARPGETAAD 202 (453)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcCCCcHHhhcccCChhhhcccccCCCCCEEECCCCccccccCCCHHH
Confidence 999999875554322 1223678888888876532 1111110 122233211100 000
Q ss_pred ----ChhhHHHHHHcCCCCcEEEEeCC-CCCCCCC-CCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHH
Q psy14428 296 ----DFAGMMEDIKAMPERSILFLQTS-SHNPTGV-DLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRY 369 (583)
Q Consensus 296 ----d~~~l~~~l~~~~~~~~~i~i~~-p~NPTG~-~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~ 369 (583)
+++.+++.++....+..++++-. .+.-.|. ..+++-+++|.++|++||+++|.||+...|..-+ .......
T Consensus 203 ~~~~~~~~l~~~l~~~~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~TG~GRtG---~~fa~~~ 279 (453)
T PRK06943 203 VAARALADVRRLFAERAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTG---TFFACEQ 279 (453)
T ss_pred HHHHHHHHHHHHHHhCCCceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCCCc---chhHHHh
Confidence 23556666654334445555433 2555565 5689999999999999999999999998885433 1222222
Q ss_pred HHHhcCcEEEEecCcccccccC-ccceEEEEEcCCchhHHHHHHHHHHH------HhccccCCChHHHHHHHHHhC
Q psy14428 370 FAKEVGQLCLAQSFSKNMGLYG-ERVGTFSVLTPTSDETERIMSQLKIL------IRGFYSNPPIHGARIVTEILS 438 (583)
Q Consensus 370 ~~~~~~~vi~i~S~SK~~~l~G-lRiG~lv~~~p~~~~~~~li~~l~~~------~~~~~~~~s~~~q~~~~~~l~ 438 (583)
+ +-.+.+++ ++|.++ .| +-+|.+++ . +++.+.+..- .....++.++++..++.+.|+
T Consensus 280 ~-gv~PDivt---~gKgl~-gG~~Pi~av~~--~-----~ei~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~ 343 (453)
T PRK06943 280 A-GVWPDFLC---LSKGIS-GGYLPLSLVLS--R-----DAIFAAFYDDDVTRGFLHSHSYTGNPLACRAALATLD 343 (453)
T ss_pred C-CCCCCeEe---eehhhc-cCcccceEEEE--c-----HHHHHhhcccCccCCccCCCCCCCCHHHHHHHHHHHH
Confidence 2 22334444 489998 78 58999999 6 4777776531 112234456666666555543
|
|
| >PRK13360 omega amino acid--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.3e-05 Score=83.30 Aligned_cols=253 Identities=13% Similarity=0.045 Sum_probs=140.1
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCC-CCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCC
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANI-GGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGIS 239 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~-~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G 239 (583)
.+...+|+..|.+....|.- .|.+.+++.+.+++- .|.+. .-..+.+..+|+.+.+... -..+++.. +++
T Consensus 44 dG~~ylD~~~g~~~~~lGh~--~p~v~~ai~~ql~~l---~~~~~~~~~~~~~~~la~~l~~~~p--~~~~~v~f--~~s 114 (442)
T PRK13360 44 DGRRVLDGTAGLWCVNAGHG--RPEIVEAVRAQAGEL---DYAPAFQMGHPKAFELANRIAEIAP--GGLNHVFF--TNS 114 (442)
T ss_pred CCCEEEECchhHHHhccCCC--CHHHHHHHHHHHHhC---CCcccCCcCCHHHHHHHHHHHHhCC--CCCCEEEE--eCC
Confidence 45677898888776556643 467777777666531 11111 1112334455555543211 11358899 999
Q ss_pred chhHHHHHHHHHHHhC-----CCCCEEEEcCCCChhhHHH-HhhcC------------CeEEEEecc-cCCC--CCC---
Q psy14428 240 GSGSLRVGTAFLERFY-----PGVKTVYFPTPTWNGHVRF-CTDSR------------LNVGAYRYF-DNKT--NGL--- 295 (583)
Q Consensus 240 ~~~al~l~~~~l~~~~-----~~gd~Vlv~~P~y~~~~~~-~~~~G------------~~~~~v~~~-d~~~--~g~--- 295 (583)
|++|.+.+..+.+... +...+|+...-+|.+...- +...| ..+..+|.. +... ++.
T Consensus 115 GseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~tg~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 194 (442)
T PRK13360 115 GSESVDTALKIALAYHRARGEGSRTRLIGRERGYHGVGFGGISVGGIVPNRKAFGALLPGVDHLPHTLDLARNAFSKGQP 194 (442)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHhhhhccCChhhhhccCCCCCCCEEeCCCchhhccccCCChH
Confidence 9999998766555442 1135788888887765321 11111 112223331 0000 111
Q ss_pred -----ChhhHHHHHHcCC-CCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHH
Q psy14428 296 -----DFAGMMEDIKAMP-ERSILFLQTSSHNPTGVD-LSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLR 368 (583)
Q Consensus 296 -----d~~~l~~~l~~~~-~~~~~i~i~~p~NPTG~~-~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~ 368 (583)
..+.+++.++... ++..++++-.-+--.|.. .+++-+++|.++|+++|+++|.||+...|..-+ ......
T Consensus 195 ~~~~~~~~~le~~l~~~~~~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~GrtG---~~~a~~ 271 (442)
T PRK13360 195 EHGAELADELERLVTLHDASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLG---APFAAQ 271 (442)
T ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCc---cchhhh
Confidence 1345666665332 334444443333333543 578889999999999999999999998774333 111121
Q ss_pred HHHHhcCcEEEEecCcccccccC-ccceEEEEEcCCchhHHHHHHHHHHH-------HhccccCCChHHHHHHHHHh
Q psy14428 369 YFAKEVGQLCLAQSFSKNMGLYG-ERVGTFSVLTPTSDETERIMSQLKIL-------IRGFYSNPPIHGARIVTEIL 437 (583)
Q Consensus 369 ~~~~~~~~vi~i~S~SK~~~l~G-lRiG~lv~~~p~~~~~~~li~~l~~~-------~~~~~~~~s~~~q~~~~~~l 437 (583)
.+ +-.+. +-+|||.++ .| +-+|.+++ + +++++.+... .....++.++++..++.+.+
T Consensus 272 ~~-gv~PD---ivt~gK~l~-gG~~P~gav~~--~-----~~i~~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~L 336 (442)
T PRK13360 272 YF-GVTPD---LLTCAKGLT-NGAIPMGAVFV--S-----SEIHDAFMQGPEAGIEFFHGYTYSGHPLACAAALATL 336 (442)
T ss_pred hc-CCCCc---eeeeeeccc-cCccceEEEEE--c-----HHHHHHhhcCCccccccccCCCCCCCHHHHHHHHHHH
Confidence 11 11122 237899997 56 78999888 6 5777776531 11223445666655555544
|
|
| >PLN02760 4-aminobutyrate:pyruvate transaminase | Back alignment and domain information |
|---|
Probab=98.45 E-value=4.3e-05 Score=83.65 Aligned_cols=256 Identities=15% Similarity=0.087 Sum_probs=144.2
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCC-CCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCC
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANI-GGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGIS 239 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~-~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G 239 (583)
.+...+|+..|.+....|. -.|.+.+++.+.++.. .. +... .+..+....+++.+..... ....+++.+ +++
T Consensus 87 dG~~ylD~~sg~~~~~lGh--~hp~v~~Av~~ql~~~-~~-~~~~~~~~~~~~~~lae~L~~~~~-~~~~~~v~f--~~S 159 (504)
T PLN02760 87 NGKKYLDALAGLWCTALGG--SEPRLVAAATEQLNKL-PF-YHSFWNRTTKPSLDLAKELLEMFT-ARKMGKVFF--TNS 159 (504)
T ss_pred CCCEEEEcCcCHHhcccCC--CCHHHHHHHHHHHhhc-cc-eecccccCcHHHHHHHHHHHhhcC-CCCCCEEEE--eCC
Confidence 4667899998887777774 3477778777766541 11 1111 2334555666666544321 112257888 899
Q ss_pred chhHHHHHHHHHHHh----C-CCCCEEEEcCCCChhhHHHH-hhcCCe------------EEEEecccCCCCCC---C--
Q psy14428 240 GSGSLRVGTAFLERF----Y-PGVKTVYFPTPTWNGHVRFC-TDSRLN------------VGAYRYFDNKTNGL---D-- 296 (583)
Q Consensus 240 ~~~al~l~~~~l~~~----~-~~gd~Vlv~~P~y~~~~~~~-~~~G~~------------~~~v~~~d~~~~g~---d-- 296 (583)
|++|.+.+..+.+.. . +..+.|+..+-+|....... ...|.. +..++..+....++ +
T Consensus 160 GsEA~e~AlKlAr~~~~~~g~~~r~~iI~~~~~yHG~t~~a~slsg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 239 (504)
T PLN02760 160 GSEANDTQVKLVWYYNNALGRPNKKKFIARSKSYHGSTLISASLSGLPALHQKFDLPAPFVLHTDCPHYWRFHLPGETEE 239 (504)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCccCChHhhhhccCChhhccCCCCCCCCcEEeCCCcccccCCCCCcHH
Confidence 999999876555432 1 11357888888887764322 212211 11222100000000 1
Q ss_pred ------hhhHHHHHHcCC-CCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHH
Q psy14428 297 ------FAGMMEDIKAMP-ERSILFLQTSSHNPTGV-DLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLR 368 (583)
Q Consensus 297 ------~~~l~~~l~~~~-~~~~~i~i~~p~NPTG~-~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~ 368 (583)
.+.+++.+.+.. ....++++-.-+.--|. ..+++-+++|.++|++||+++|.||+.-.|..-+ ......
T Consensus 240 ~~~~~~~~~le~~l~~~~~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfGRtG---~~~a~e 316 (504)
T PLN02760 240 EFSTRLADNLENLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLG---TMFGCD 316 (504)
T ss_pred HHHHHHHHHHHHHHHhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCcccc---hhhHHH
Confidence 134555554322 33444544333333354 3578899999999999999999999998884333 111211
Q ss_pred HHHHhcCcEEEEecCcccccccC-ccceEEEEEcCCchhHHHHHHHHHHH-------HhccccCCChHHHHHHHHHhC
Q psy14428 369 YFAKEVGQLCLAQSFSKNMGLYG-ERVGTFSVLTPTSDETERIMSQLKIL-------IRGFYSNPPIHGARIVTEILS 438 (583)
Q Consensus 369 ~~~~~~~~vi~i~S~SK~~~l~G-lRiG~lv~~~p~~~~~~~li~~l~~~-------~~~~~~~~s~~~q~~~~~~l~ 438 (583)
.+ +-.+. +-+|+|.+| .| +-+|.+++ + +++++.+... .....++.++++..++.+.|+
T Consensus 317 ~~-gv~PD---ivtlgK~lg-gG~~PigAv~~--~-----~~i~d~~~~~~~~~~~~~h~~T~~gnPl~~Aaala~Le 382 (504)
T PLN02760 317 KY-NIKPD---LVSLAKALS-SAYMPIGAVLV--S-----PEISDVIHSQSNKLGSFAHGFTYSGHPVSCAVALEALK 382 (504)
T ss_pred hc-CCCCc---EEEeccccc-CCccccceEee--c-----HHHHhhhhcccccccCcccCCCCCCCHHHHHHHHHHHH
Confidence 11 11122 567899997 67 48999888 5 4788777531 112244556666666655553
|
|
| >PRK05965 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=6.4e-05 Score=81.55 Aligned_cols=265 Identities=13% Similarity=0.074 Sum_probs=149.9
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCC-CCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCC
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANI-GGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGIS 239 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~-~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G 239 (583)
.+...+|+..|.+....|.- .+.+.+++.+.+++. .+ .... .-..+.+..+|+.+.+... -..+++.. +++
T Consensus 44 dG~~ylD~~~g~~~~~lGh~--~p~i~~Ai~~q~~~~-~~-~~~~~~~~~~~~~~lae~L~~~~p--~~~~~v~f--~~s 115 (459)
T PRK05965 44 SGHQLLDAFAGLWCVNVGYG--QESIVEAAAEQMREL-PY-ATGYFHFGSEPAIRLAAKLAERAP--GSLNHVYF--TLG 115 (459)
T ss_pred CCCEEEECcccHHhccCCCC--CHHHHHHHHHHHHhc-CC-cccccccCCHHHHHHHHHHHhhCC--CCcCEEEE--eCC
Confidence 45577898888776666653 367777777766541 11 1110 0112333445555543221 12368899 999
Q ss_pred chhHHHHHHHHHHHhC-----CCCCEEEEcCCCChhhHHHH-hhcCC------------eEEEEecccCC--CCCCCh--
Q psy14428 240 GSGSLRVGTAFLERFY-----PGVKTVYFPTPTWNGHVRFC-TDSRL------------NVGAYRYFDNK--TNGLDF-- 297 (583)
Q Consensus 240 ~~~al~l~~~~l~~~~-----~~gd~Vlv~~P~y~~~~~~~-~~~G~------------~~~~v~~~d~~--~~g~d~-- 297 (583)
|++|.+.+..+.+... +...+|+..+-+|.+..... ...|. .+..+|..... ..+-|.
T Consensus 116 GSEAve~AlKlAr~~~~~~g~~~r~kii~~~~~YHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (459)
T PRK05965 116 GSDAVDSAVRFIRHYWNATGRPSKKQFISLERGYHGSSSVGAGLTALPAFHRGFDLPLPWQHKIPSPYPYRNPVGDDPQA 195 (459)
T ss_pred hhHHHHHHHHHHHHHHHhcCCCCccEEEEecCCcCcccHHHHHhcCCchhhcccCCCCCCCEEcCCCcccccccCCChHH
Confidence 9999998876655441 21357888888887764211 11110 11222221000 011122
Q ss_pred ------hhHHHHHHcCC-CCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHH
Q psy14428 298 ------AGMMEDIKAMP-ERSILFLQTSSHNPTGV-DLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRY 369 (583)
Q Consensus 298 ------~~l~~~l~~~~-~~~~~i~i~~p~NPTG~-~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~ 369 (583)
+.+++.++... +...++++-.-+.-.|. +.+++-+++|.++|++||+++|.||+...|..-+ .......
T Consensus 196 ~~~~~~~~l~~~i~~~~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfGRtG---~~~a~~~ 272 (459)
T PRK05965 196 IIAASVAALRAKVAELGADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVITGFGRTG---PLFACEA 272 (459)
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEechhccCccCc---hhhhHhh
Confidence 45666665433 34455555444555565 5688899999999999999999999999885433 1222222
Q ss_pred HHHhcCcEEEEecCcccccccC-ccceEEEEEcCCchhHHHHHHHHHHH-------HhccccCCChHHHHHHHHHh---C
Q psy14428 370 FAKEVGQLCLAQSFSKNMGLYG-ERVGTFSVLTPTSDETERIMSQLKIL-------IRGFYSNPPIHGARIVTEIL---S 438 (583)
Q Consensus 370 ~~~~~~~vi~i~S~SK~~~l~G-lRiG~lv~~~p~~~~~~~li~~l~~~-------~~~~~~~~s~~~q~~~~~~l---~ 438 (583)
+ +-.+.+++ ++|.++ .| +-+|.+++ . +++++.+..- .....++.++++..++.+.| +
T Consensus 273 ~-gv~PDiv~---~gKgl~-gG~~Pi~av~~--~-----~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~l~ 340 (459)
T PRK05965 273 E-GVVPDLMT---VAKGLT-SGYVPMGAVLM--S-----DHVYQGIADGAGAAAPVGHGYTYSAHPVSAAVGLEVLRLYH 340 (459)
T ss_pred c-CCCCCeEE---echhhc-cCCcceeEEEE--c-----HHHHHHHhccccccccccccCCCCCCHHHHHHHHHHHHHHH
Confidence 2 22234443 589998 79 49999999 6 5787776531 11224455666665555444 4
Q ss_pred Chhhhhhhhh
Q psy14428 439 DPKLKAQCDE 448 (583)
Q Consensus 439 ~~~~~~~~~~ 448 (583)
++.+..+...
T Consensus 341 ~~~l~~~~~~ 350 (459)
T PRK05965 341 EGGLLANGQK 350 (459)
T ss_pred hccHHHHHHH
Confidence 5444444333
|
|
| >PRK06082 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=5.2e-05 Score=82.21 Aligned_cols=249 Identities=12% Similarity=0.051 Sum_probs=135.5
Q ss_pred CCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCch
Q psy14428 162 HPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGS 241 (583)
Q Consensus 162 ~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~ 241 (583)
+...+|+. |.+....|. -.|.+.+++.+.++.. .+....-..+.+..+++.+....+ -..+++.+ +++++
T Consensus 71 G~~ylD~~-g~~~~~lGh--~~p~v~~Ai~~ql~~~---~~~~~~~~~~~~~~lae~L~~~~p--~~~~~v~f--~~sGs 140 (459)
T PRK06082 71 GKKYMDFH-GNNVHQLGY--GHPHVIEKVKEQMAKL---PFSPRRFTNETAIECAEKLTEIAG--GELNRVLF--APGGT 140 (459)
T ss_pred CCEEEEcc-cHhhcccCC--CCHHHHHHHHHHHHhC---CCccCccCCHHHHHHHHHHHHhCC--CCCCEEEE--CCCcH
Confidence 44567775 434434453 2366777776666531 111111112344455555543321 11368999 99999
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEcCCCChhhHH-HHhhcCC------------eEEEEecccCCC--CC-CC------hhh
Q psy14428 242 GSLRVGTAFLERFYPGVKTVYFPTPTWNGHVR-FCTDSRL------------NVGAYRYFDNKT--NG-LD------FAG 299 (583)
Q Consensus 242 ~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~-~~~~~G~------------~~~~v~~~d~~~--~g-~d------~~~ 299 (583)
+|.+.+..+.+.... ..+|+...-+|..... .+...|. .+..+|..+... +. .+ ++.
T Consensus 141 eAve~AlklAr~~tg-r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (459)
T PRK06082 141 SAIGMALKLARHITG-NFKVVSLWDSFHGASLDAISVGGEACFRQGMGPLMAGVERIPPAVSYRGAFPDADGSDVHYADY 219 (459)
T ss_pred HHHHHHHHHHHHhcC-CCEEEEEeCCCcCccHHHHhhcCCcccccCCCCCCCCCEEeCCCcccccccCChhHHHHHHHHH
Confidence 999988666555533 4678888888776532 2222221 122232210000 00 01 234
Q ss_pred HHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEE
Q psy14428 300 MMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCL 379 (583)
Q Consensus 300 l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~ 379 (583)
+++.+++. ....++++-.-++--+...+++-+++|.++|++||+++|.||+...|...+ .......+ +-.+.+++
T Consensus 220 l~~~i~~~-~~vAavIvEPv~g~g~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG---~~fa~e~~-gv~PDiv~ 294 (459)
T PRK06082 220 LEYVIEKE-GGIGAFIAEAVRNTDVQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRTG---EWFTHQAY-GIEPDILC 294 (459)
T ss_pred HHHHHhcC-CCEEEEEECCccCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccc---hhhHhHhh-CCCCCEEE
Confidence 55655432 344455543334433456788899999999999999999999998874433 11122222 22233443
Q ss_pred EecCcccccccC-ccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHh
Q psy14428 380 AQSFSKNMGLYG-ERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEIL 437 (583)
Q Consensus 380 i~S~SK~~~l~G-lRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l 437 (583)
|+|.++ .| +-+|.+++ . +++.+..........++.++++..++.+.+
T Consensus 295 ---~gKgl~-gG~~P~~av~~--~-----~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L 342 (459)
T PRK06082 295 ---IGKGLG-GGLVPIAAMIT--K-----DKYNTAAQISLGHYTHEKSPLGCAAALATI 342 (459)
T ss_pred ---eccccc-CCCCcceEEEE--c-----HHHHhhccCCCCCCCCCcCHHHHHHHHHHH
Confidence 899998 67 58999998 5 345433321111134456666665555544
|
|
| >PRK07482 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=5.7e-05 Score=81.96 Aligned_cols=254 Identities=15% Similarity=0.096 Sum_probs=145.9
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCC-C-CCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecC
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYAN-I-GGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGI 238 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~-~-~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~ 238 (583)
.+...+|+..|.+....|.- .+.+.+++.+.++.. .|.. . .-..+.+..+|+.+.+.. +-.-+++.+ ++
T Consensus 48 dG~~ylD~~sg~~~~~lGh~--~p~v~~Av~~q~~~~---~~~~~~~~~~~~~~~~lAe~L~~~~--p~~~~~v~f--~~ 118 (461)
T PRK07482 48 QGRRYIDAFAGLYCVNVGYG--RTEVAEAIAEQAKEL---AYYHTYVGHGTEASITLSKRIIDRA--PAGMSKVYY--GL 118 (461)
T ss_pred CCCEEEEcccchhhhcCCCC--CHHHHHHHHHHHHhc---CccccccccCCHHHHHHHHHHHHhC--CCCcCEEEE--eC
Confidence 45677999988887766653 467777777766542 1111 1 112344555666654422 112368999 99
Q ss_pred CchhHHHHHHHHHHHhC-----CCCCEEEEcCCCChhhHHHHhh-cC------------CeEEEEecccCCC---CCC--
Q psy14428 239 SGSGSLRVGTAFLERFY-----PGVKTVYFPTPTWNGHVRFCTD-SR------------LNVGAYRYFDNKT---NGL-- 295 (583)
Q Consensus 239 G~~~al~l~~~~l~~~~-----~~gd~Vlv~~P~y~~~~~~~~~-~G------------~~~~~v~~~d~~~---~g~-- 295 (583)
+|++|.+.+..+.+... ....+|+...-+|.+....... .| ..+..++...... .+.
T Consensus 119 sGSEAve~AlKlAr~~~~~~g~~~r~~Ii~~~~~YHG~t~ga~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 198 (461)
T PRK07482 119 SGSDANETQIKLVWYYNNVLGRPEKKKIISRWRGYHGSGVVTGSLTGLSLFHQHFDLPIARVLHTEAPHYYRRADAGMSE 198 (461)
T ss_pred chHHHHHHHHHHHHHHHHhcCCCCCceEEEecCccCCccHhhhhccCCchhhhccCCCCCCCEEcCCCccccccccCCCH
Confidence 99999998766654331 1135788888888775321111 11 0112222100000 010
Q ss_pred ------ChhhHHHHHHcC-CCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHH
Q psy14428 296 ------DFAGMMEDIKAM-PERSILFLQTSSHNPTGVD-LSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSL 367 (583)
Q Consensus 296 ------d~~~l~~~l~~~-~~~~~~i~i~~p~NPTG~~-~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~ 367 (583)
+++.+++.+.+. .+...++++-.-+.-.|.. .+++-+++|.++|++||+++|.||+...|..-+ .....
T Consensus 199 ~~~~~~~~~~l~~~~~~~~~~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG---~~~a~ 275 (461)
T PRK07482 199 EQFSAYCADELEELILAEGPDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTGFGRLG---SMFGS 275 (461)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCc---chhhH
Confidence 245566666432 2344555543334444655 578899999999999999999999999884333 11122
Q ss_pred HHHHHhcCcEEEEecCcccccccCc-cceEEEEEcCCchhHHHHHHHHHHH-------HhccccCCChHHHHHHHHHhC
Q psy14428 368 RYFAKEVGQLCLAQSFSKNMGLYGE-RVGTFSVLTPTSDETERIMSQLKIL-------IRGFYSNPPIHGARIVTEILS 438 (583)
Q Consensus 368 ~~~~~~~~~vi~i~S~SK~~~l~Gl-RiG~lv~~~p~~~~~~~li~~l~~~-------~~~~~~~~s~~~q~~~~~~l~ 438 (583)
..+ +-.+.+++ ++|.++ .|+ -+|.+++ . +++.+.+... .....++.++++..++.+.++
T Consensus 276 ~~~-gv~PDiv~---~gKgl~-gG~~Pi~av~~--~-----~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~ 342 (461)
T PRK07482 276 DHY-GIEPDLIT---VAKGLT-SAYAPLSGSIV--G-----EKVWDVLEQGSDEHGAIGHGWTYSGHPICAAAALANLD 342 (461)
T ss_pred Hhc-CCCCCEEE---Eccccc-cCccccceeee--c-----HHHHHHHhcccccCCccccCCCCCcCHHHHHHHHHHHH
Confidence 222 22334444 589997 785 8999888 5 4677766521 111244567777666665553
|
|
| >PLN02263 serine decarboxylase | Back alignment and domain information |
|---|
Probab=98.44 E-value=2e-05 Score=84.21 Aligned_cols=235 Identities=13% Similarity=0.009 Sum_probs=151.0
Q ss_pred CCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEe
Q psy14428 207 GDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYR 286 (583)
Q Consensus 207 G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~ 286 (583)
+..++.+.+.+|+.+..|.+-..-.=.+ |+||++|.-.+....+...+ ...|++++-+.......++.+|++++.||
T Consensus 130 ~s~~~E~~Vi~wla~L~g~p~~~~~G~v--tsGGTEaNL~Al~aARe~~~-~~vvy~S~~aH~Sv~KAa~llgi~~~~Vp 206 (470)
T PLN02263 130 HSRQFEVGVLDWFARLWEIEKNEYWGYI--TNCGTEGNLHGILVGREVFP-DGILYASRESHYSVFKAARMYRMECVKVD 206 (470)
T ss_pred hHHHHHHHHHHHHHHHhCCCCCCCeEEE--eCcHHHHHHHHHHHHHhhcC-CcEEEEcCCccHHHHHHHHhcCCcceEec
Confidence 6788999999999877765321223467 99999998776444444433 34788888888888899999999999999
Q ss_pred cccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCe-----EEEEeccCCCCCCCCCC
Q psy14428 287 YFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHL-----YPFFDMAYLGLTSGDFD 361 (583)
Q Consensus 287 ~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i-----~iI~De~Y~~l~~~~~~ 361 (583)
. |+ ++.+|++.|++++.+...++.+++.+-+.-+||.+ |.+++|.++|+++|+ |+-+|-+|+.+...-.
T Consensus 207 ~-d~-~g~mD~~aL~~aI~~d~~~P~iVvataGTT~~GAi---Dpi~eIa~i~~~~g~~~~~iwlHVDAA~GG~~lPf~- 280 (470)
T PLN02263 207 T-LV-SGEIDCADFKAKLLANKDKPAIINVNIGTTVKGAV---DDLDLVIKTLEECGFSQDRFYIHCDGALFGLMMPFV- 280 (470)
T ss_pred c-CC-CCcCcHHHHHHHHHhCCCCcEEEEEEecCCCCcCC---CCHHHHHHHHHHcCCccCCeeEEEeccchhhHhhhc-
Confidence 8 54 47899999999997655456667677778888866 456677888888886 9999999988754211
Q ss_pred CchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHH---H---hccc--c--CCChHHHH
Q psy14428 362 KDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKIL---I---RGFY--S--NPPIHGAR 431 (583)
Q Consensus 362 ~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~---~---~~~~--~--~~s~~~q~ 431 (583)
+..+.+ .+.. .--=+.-+.-|.++ .-.-.|.++. .+ ..++.+... . .... + +...+..+
T Consensus 281 ~~~~~~-df~~--~vDSIsvD~HK~l~-~P~~cgvll~--R~-----~~~~~~~~~~~Yl~~~d~ti~gSR~g~~al~lW 349 (470)
T PLN02263 281 KRAPKV-TFKK--PIGSVSVSGHKFVG-CPMPCGVQIT--RM-----EHINVLSSNVEYLASRDATIMGSRNGHAPIFLW 349 (470)
T ss_pred cccccc-CCCc--CccEEEECCccccC-CCcCEEEEEE--eh-----hhHhhhccChHhhCCCCCCcCCCCCcHHHHHHH
Confidence 011011 1110 10113345678775 7778898888 52 233333221 0 0011 1 11245556
Q ss_pred HHHHHhCChhhhhhhhhHHHHHHHHHHHHh
Q psy14428 432 IVTEILSDPKLKAQCDETERIMSQLKILIR 461 (583)
Q Consensus 432 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r 461 (583)
++...+....+.+..++..+..+.+.+.++
T Consensus 350 ~~L~~~G~~G~~~~i~~~~~~A~~l~~~l~ 379 (470)
T PLN02263 350 YTLNRKGYRGFQKEVQKCLRNAHYLKDRLR 379 (470)
T ss_pred HHHHHhCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666677666665555555544443
|
|
| >PRK12403 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=8.7e-05 Score=80.52 Aligned_cols=254 Identities=15% Similarity=0.066 Sum_probs=138.5
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCC-CCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCC
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANI-GGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGIS 239 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~-~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G 239 (583)
.+...+|+..|.+....|.- .|.+.+++.+.++.. .. +... .+..+....+++.+....+ -.-+++++ +++
T Consensus 52 dG~~ylD~~~g~~~~~lGh~--hp~v~~A~~~q~~~~-~~-~~~~~~~~~~~~~~lae~L~~~~p--~~~~~v~f--~~S 123 (460)
T PRK12403 52 DGKRYLDGMSGLWCTNLGYG--RKDLAAAAARQMEQL-PY-YNMFFHTTHPAVIELSELLFSLLP--GHYSHAIY--TNS 123 (460)
T ss_pred CCCEEEECchhHHhhcCCCC--CHHHHHHHHHHHHhC-CC-eecccccCCHHHHHHHHHHHHhCC--CCcCEEEE--eCC
Confidence 45678999888776667753 377777777766541 11 1111 1233444455555543221 11268899 999
Q ss_pred chhHHHHHHHHHHHh----CCCCC-EEEEcCCCChhhHH-HHhhcCCe-----------EEEEecccC--CCCCCC----
Q psy14428 240 GSGSLRVGTAFLERF----YPGVK-TVYFPTPTWNGHVR-FCTDSRLN-----------VGAYRYFDN--KTNGLD---- 296 (583)
Q Consensus 240 ~~~al~l~~~~l~~~----~~~gd-~Vlv~~P~y~~~~~-~~~~~G~~-----------~~~v~~~d~--~~~g~d---- 296 (583)
|++|.+.+..+.+.. ..+++ .|+...-+|..... .....|.+ +..+|.... ..+++.
T Consensus 124 GseA~e~AiklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~~~s~s~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 203 (460)
T PRK12403 124 GSEANEVLIRTVRRYWQVLGKPQKKIMIGRWNGYHGSTLAATALGGMKFMHEMGGLIPDVAHIDEPYWYANGGELTPAEF 203 (460)
T ss_pred cHHHHHHHHHHHHHHHHhhCCCCCcEEEEECCCcCcccHhhhhcCCCccccccCCCCCCCEEeCCCcccccccCCChHHH
Confidence 999999876666544 12233 34454556665422 22222211 222322000 000111
Q ss_pred ----hhhHHHHHHcCC-CCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHH
Q psy14428 297 ----FAGMMEDIKAMP-ERSILFLQTSSHNPTGV-DLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYF 370 (583)
Q Consensus 297 ----~~~l~~~l~~~~-~~~~~i~i~~p~NPTG~-~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~ 370 (583)
.+.+++.+.+.. +...++++-.-+.--|. ..+++-+++|.++|++||+++|.||+...|.--+ .......+
T Consensus 204 ~~~~~~~le~~~~~~~~~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG---~~~a~e~~ 280 (460)
T PRK12403 204 GRRAALQLEEKILELGAENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRTG---EWFAHEHF 280 (460)
T ss_pred HHHHHHHHHHHHHHhCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCc---hhhhhhhc
Confidence 234545553322 33344444322333354 4577889999999999999999999998774433 11121221
Q ss_pred HHhcCcEEEEecCcccccccCc-cceEEEEEcCCchhHHHHHHHHHHHH----hccccCCChHHHHHHHHHh
Q psy14428 371 AKEVGQLCLAQSFSKNMGLYGE-RVGTFSVLTPTSDETERIMSQLKILI----RGFYSNPPIHGARIVTEIL 437 (583)
Q Consensus 371 ~~~~~~vi~i~S~SK~~~l~Gl-RiG~lv~~~p~~~~~~~li~~l~~~~----~~~~~~~s~~~q~~~~~~l 437 (583)
+-.+.++ +|+|.++ .|. -+|.+++ . +++++.+.... ....++.++++..++.+.|
T Consensus 281 -gv~PDiv---~~gK~lg-gG~~Piga~v~--~-----~~i~~~~~~~~~~~~~~~T~~gnPl~~Aaala~L 340 (460)
T PRK12403 281 -GFEPDTL---SIAKGLT-SGYVPMGGLVL--S-----KRIAEALVEQGGVFAHGLTYSGHPVAAAVAIANL 340 (460)
T ss_pred -CCCCCeE---EEccccc-ccccceEEEEE--C-----HHHHHHHhcCCCccccCCCCCCCHHHHHHHHHHH
Confidence 2223344 3899998 785 8999998 5 46777765311 1123445666666555544
|
|
| >PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=9.1e-05 Score=80.42 Aligned_cols=253 Identities=10% Similarity=0.039 Sum_probs=144.3
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCC-CCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCC
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANI-GGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGIS 239 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~-~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G 239 (583)
.+...+|+..|.+....|.- .+.+.+++.+.++.. .|... .-..+.+..+|+.+.... +-..+++.. +++
T Consensus 45 dG~~ylD~~~g~~~~~lGh~--~p~v~~Ai~~ql~~l---~~~~~~~~~~~~~~~lae~L~~~~--p~~~~~v~f--~~s 115 (466)
T PRK07030 45 EGKRYLDAVSSWWVNVFGHA--NPRINQRIKDQVDQL---EHVILAGFSHEPVIELSERLVKIT--PPGLSRCFY--ADN 115 (466)
T ss_pred CCCEEEEcchhHHhhcCCCC--CHHHHHHHHHHHHhc---CCccccccCCHHHHHHHHHHHHhC--CCCcCEEEE--eCC
Confidence 45677899888776666653 367777777666541 11111 111244455555554321 112358999 999
Q ss_pred chhHHHHHHHHHHHh----C-CCCCEEEEcCCCChhhHHHHhh-cCC------------eEEEEecccCC--CCCC----
Q psy14428 240 GSGSLRVGTAFLERF----Y-PGVKTVYFPTPTWNGHVRFCTD-SRL------------NVGAYRYFDNK--TNGL---- 295 (583)
Q Consensus 240 ~~~al~l~~~~l~~~----~-~~gd~Vlv~~P~y~~~~~~~~~-~G~------------~~~~v~~~d~~--~~g~---- 295 (583)
|++|.+.+..+.+.. . ....+|+...-+|......... .|. .+..+|..+.. ..+.
T Consensus 116 GsEAve~AlKlAr~~~~~~g~t~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~ 195 (466)
T PRK07030 116 GSSAIEVALKMSFHYWRNRGKPRKKRFVTLTNSYHGETLAAMSVGDVALFTETYKPLLLDTIKVPSPDCYLRPEGMSWEE 195 (466)
T ss_pred cHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCcccHHHHhccCCccccccCCccCCCCEEcCCCCccccccCCCHHH
Confidence 999999876555443 1 2235788888888765322221 111 12223321100 0111
Q ss_pred ----ChhhHHHHHHcCCCCcEEEEeCCC--CCCCCC-CCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHH
Q psy14428 296 ----DFAGMMEDIKAMPERSILFLQTSS--HNPTGV-DLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLR 368 (583)
Q Consensus 296 ----d~~~l~~~l~~~~~~~~~i~i~~p--~NPTG~-~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~ 368 (583)
+++.+++.+.+...+..++++ -| +.-.|. ..+++-+++|.++|+++|+++|.||+...|..-+ ......
T Consensus 196 ~~~~~l~~le~~~~~~~~~iAAvi~-EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~TGfGRtG---~~~a~~ 271 (466)
T PRK07030 196 HSRRMFAHMEQTLAEHHDEIAAVIV-EPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTG---TMFACE 271 (466)
T ss_pred HHHHHHHHHHHHHHhCCCceEEEEE-ecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCccc---cchHHH
Confidence 134456666543344444444 44 444455 5677899999999999999999999998885433 122222
Q ss_pred HHHHhcCcEEEEecCcccccccC-ccceEEEEEcCCchhHHHHHHHHHHH-------HhccccCCChHHHHHHHHHhC
Q psy14428 369 YFAKEVGQLCLAQSFSKNMGLYG-ERVGTFSVLTPTSDETERIMSQLKIL-------IRGFYSNPPIHGARIVTEILS 438 (583)
Q Consensus 369 ~~~~~~~~vi~i~S~SK~~~l~G-lRiG~lv~~~p~~~~~~~li~~l~~~-------~~~~~~~~s~~~q~~~~~~l~ 438 (583)
.+ +-.+.+++ |+|.++ .| +-+|.+++ . +++.+.+..- .....++.++++..++.+.++
T Consensus 272 ~~-gv~PDiv~---~gKgl~-gG~~Pi~av~~--~-----~ei~~~~~~~~~~~~~~~h~~T~~gnpla~aaa~a~L~ 337 (466)
T PRK07030 272 QA-GIRPDFLC---LSKALT-GGYLPLAAVLT--T-----DTVYQAFYDDYPTLRAFLHSHSYTGNPLACAAALATLD 337 (466)
T ss_pred hc-CCCCCEEe---eehhcc-CCcccceEEEe--c-----HHHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHH
Confidence 22 22334444 499998 79 49999999 6 5777776421 112344556777666655543
|
|
| >TIGR01788 Glu-decarb-GAD glutamate decarboxylase | Back alignment and domain information |
|---|
Probab=98.40 E-value=6.8e-06 Score=88.00 Aligned_cols=202 Identities=14% Similarity=0.035 Sum_probs=128.8
Q ss_pred CChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHh-----CC
Q psy14428 182 VLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERF-----YP 256 (583)
Q Consensus 182 ~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~-----~~ 256 (583)
+.+.+.+++...+... ..++.......++.+.+.+++.+..|.+-..+++...-|+|+++|..++....+.. ..
T Consensus 53 ~~p~~~~~~~~~l~~~-~~np~s~~~~~~le~~~~~~la~llg~~~~~~~~~g~~TsGgTEAn~~al~~ar~~~~~~~~~ 131 (431)
T TIGR01788 53 MEPEARKLMDETINKN-MIDKDEYPQTAEIENRCVNMLADLWHAPAKDAEAVGTSTIGSSEAIMLGGLAMKWRWRKRMEA 131 (431)
T ss_pred CCHHHHHHHHHHHhcC-CCCcccCccHHHHHHHHHHHHHHHhCCCCCCCCCeEEEechHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456777776666432 12222233334666666666665555431113443312799999998763222211 01
Q ss_pred C-----CCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHH
Q psy14428 257 G-----VKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQ 331 (583)
Q Consensus 257 ~-----gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~ 331 (583)
. ...|++.+-........++..|+++..+|+ |++++.+|++.+++.+ .+++.++++.-.+|.||.+-+.++
T Consensus 132 ~g~~~~~~~ii~s~~~H~sv~ka~~~lg~~v~~i~~-d~~~~~vd~~~L~~~i---~~~t~lV~~t~g~t~tG~idpi~~ 207 (431)
T TIGR01788 132 AGKPTDKPNLVMGSNVQVCWEKFARYFDVELREVPM-DPGRYVIDPEQVVEAV---DENTIGVVCILGTTYTGEYEDVKA 207 (431)
T ss_pred cCCCCCCcEEEEcCcchHHHHHHHHHcCceeEEEec-CCCceeeCHHHHHHHH---hhCCeEEEEEeCCCCCcccCCHHH
Confidence 1 136888888888888888889999999999 6533468999999998 456789999999999999988555
Q ss_pred HHHHHHHHHhc------CeEEEEeccCCCCC----CCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEE
Q psy14428 332 WRQLAVVVKQR------HLYPFFDMAYLGLT----SGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSV 399 (583)
Q Consensus 332 ~~~l~~~a~~~------~i~iI~De~Y~~l~----~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~ 399 (583)
|.++|+++ ++++.+|-+|+.+. .+. .... + ...+---..-|.-|.+ +.-.-+|.+++
T Consensus 208 ---I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~---~~~~---~-~~~~~DSis~s~HK~~-~~P~g~G~l~~ 274 (431)
T TIGR01788 208 ---LNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPD---LEWD---F-RLPRVKSINVSGHKYG-LVYPGVGWVIW 274 (431)
T ss_pred ---HHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCC---chhh---c-CCCCceEEEECchhcc-CCCCCcEEEEE
Confidence 56777788 89999999998543 111 0101 1 1111223566788965 13344799998
|
This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA). |
| >TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.9e-05 Score=82.53 Aligned_cols=252 Identities=8% Similarity=0.027 Sum_probs=138.6
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCC--CCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecC
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNL--DHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGI 238 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~--~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~ 238 (583)
.+...+|+..|.+....|. -.+.+.+++.+.++... ...+.......+|-+.+++... -.-+++.. ++
T Consensus 43 dG~~ylD~~~g~~~~~lGh--~~p~v~~ai~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~------~~~~~v~f--~~ 112 (427)
T TIGR00508 43 DGRRLIDGMSSWWAAIHGY--NHPRLNAAAQKQIDKMSHVMFGGFTHKPAIELCQKLVKMTP------NALDCVFL--AD 112 (427)
T ss_pred CCCEEEEccchHHHhcCCC--CCHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHhhCC------CCCCEEEE--eC
Confidence 3456788888776555563 34677777776665411 1111122223444444444321 11268888 99
Q ss_pred CchhHHHHHHHHHHHhC-----CCCCEEEEcCCCChhhHHHHhh-cCCe-------------EEEEecccCCCCC-----
Q psy14428 239 SGSGSLRVGTAFLERFY-----PGVKTVYFPTPTWNGHVRFCTD-SRLN-------------VGAYRYFDNKTNG----- 294 (583)
Q Consensus 239 G~~~al~l~~~~l~~~~-----~~gd~Vlv~~P~y~~~~~~~~~-~G~~-------------~~~v~~~d~~~~g----- 294 (583)
+|++|.+.+..+.+... +...+|+..+-+|......+.. .|.. ...++.. ...+.
T Consensus 113 sGseA~e~AlklAr~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~ 191 (427)
T TIGR00508 113 SGSVAVEVALKMALQYWQAKGEKNRQKFLTIRSGYHGDTFGAMSVCDPENSMHSLYKGYLPEQIFAPAP-QNRFDEEWNE 191 (427)
T ss_pred CcHHHHHHHHHHHHHHHHhhCCCCccEEEEEcCCcCCccHhhhcccCCcccccccccccCCCCeEcCCC-CccccchhHH
Confidence 99999988755544331 1135788888888765322221 1210 1112110 00011
Q ss_pred CChhhHHHHHHcCCCCcEEEEeCC-CCCCCCC-CCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHH
Q psy14428 295 LDFAGMMEDIKAMPERSILFLQTS-SHNPTGV-DLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAK 372 (583)
Q Consensus 295 ~d~~~l~~~l~~~~~~~~~i~i~~-p~NPTG~-~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~ 372 (583)
-|++.+++.+.+...+..++++-. .++--|. ..+.+.+++|.++|+++++++|.||++.++...+ .......+ +
T Consensus 192 ~~~~~l~~~l~~~~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~Gr~G---~~~~~~~~-~ 267 (427)
T TIGR00508 192 EAITPLAKLMELHSDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIATGFGRTG---KLFACEHA-G 267 (427)
T ss_pred HHHHHHHHHHHhcCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCC---ccchhhhc-C
Confidence 134566666654333444444432 2555454 5579999999999999999999999997775443 11112111 2
Q ss_pred hcCcEEEEecCcccccccCc-cceEEEEEcCCchhHHHHHHHHHHHH-----hccccCCChHHHHHHHHHhC
Q psy14428 373 EVGQLCLAQSFSKNMGLYGE-RVGTFSVLTPTSDETERIMSQLKILI-----RGFYSNPPIHGARIVTEILS 438 (583)
Q Consensus 373 ~~~~vi~i~S~SK~~~l~Gl-RiG~lv~~~p~~~~~~~li~~l~~~~-----~~~~~~~s~~~q~~~~~~l~ 438 (583)
....++ ++||.++ .|+ -++.+++ . +++++.+.... ....+..++++..++.+.++
T Consensus 268 v~pDi~---~~gK~l~-gG~~p~~a~~~--~-----~~~~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~ 328 (427)
T TIGR00508 268 VVPDIL---CVGKALT-GGYMTLSATVT--T-----DKVAQTISSGEAGCFMHGPTFMGNPLACAVAEASLA 328 (427)
T ss_pred CCCCEE---Eechhhh-cCcccceEEEE--c-----HHHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHH
Confidence 222333 3799996 785 5777777 5 57777776321 11223346666665555543
|
All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae. |
| >PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=98.40 E-value=4.4e-06 Score=86.98 Aligned_cols=254 Identities=14% Similarity=0.083 Sum_probs=143.9
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCC-CCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCC
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYAN-IGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGIS 239 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~-~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G 239 (583)
.+...+|+..|.+....|.- .|.+.+++.+..... .|.. ..-..+.+.++++.+.+..+. ..+++.+ +++
T Consensus 14 dG~~~lD~~~~~~~~~lGh~--~p~i~~ai~~~~~~~---~~~~~~~~~~~~~~~la~~L~~~~p~--~~~~v~f--~~s 84 (339)
T PF00202_consen 14 DGREYLDFMSGYGSVNLGHN--HPEIAEAIAEQANKL---NYVSFSGFTHPEAAELAEKLAELFPG--GLDRVFF--ANS 84 (339)
T ss_dssp TSEEEEESSHHHHTTTT-BT---HHHHHHHHHHHHHC---SSCSTTTSEEHHHHHHHHHHHHHSST--TEEEEEE--ESS
T ss_pred CCCEEEECCCCccceecCCC--ccccchhHHHHhhhc---ccccccceeccchhhhhhhhhhcccc--ccceeee--ccC
Confidence 34567888877776666643 467777777766542 2222 333345566666666543311 3468999 999
Q ss_pred chhHHHHHHHHHHH-----hCCCCCEEEEcCCCChhhHHHHhh-------------cCCeEEEEecccCCC---CCCChh
Q psy14428 240 GSGSLRVGTAFLER-----FYPGVKTVYFPTPTWNGHVRFCTD-------------SRLNVGAYRYFDNKT---NGLDFA 298 (583)
Q Consensus 240 ~~~al~l~~~~l~~-----~~~~gd~Vlv~~P~y~~~~~~~~~-------------~G~~~~~v~~~d~~~---~g~d~~ 298 (583)
|++|++.+..+.+. ..+.-..|+...-+|......... ....+..+|..+... ..-...
T Consensus 85 GseAve~Alkla~~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 164 (339)
T PF00202_consen 85 GSEAVEAALKLARQYHNKRAYTGRRKILAFEGSYHGRTLGALSLTGNPPYRKGFGPLYPGVVFVPFPDPAADEEEQACLN 164 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHTTTEEEEETTTB-TSSHHHHHHSSSTHHHTTTCSSSTTEEEEETTCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHhhcccccccccCCceEEEeeeeeeccCcccccccCCccccccccccccccccccCCccchhhhHHHHHH
Confidence 99999998666550 122246888888888754321111 112345566521100 000011
Q ss_pred hHHHHHHcC-CCCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCc
Q psy14428 299 GMMEDIKAM-PERSILFLQTSSHNPTGV-DLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQ 376 (583)
Q Consensus 299 ~l~~~l~~~-~~~~~~i~i~~p~NPTG~-~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~ 376 (583)
.+++.+.+. .+...++++-.-+--.|. ..+++-+++|.++|+++|+++|.||+...|..-+ .......+ +..+.
T Consensus 165 ~~~~~~~~~~~~~iaavivEPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRtG---~~~a~~~~-gv~PD 240 (339)
T PF00202_consen 165 ALEELIAALNADEIAAVIVEPIQGEGGMIPPPPEYLRELRELCREHGILLIADEVQTGFGRTG---KFFASEHY-GVDPD 240 (339)
T ss_dssp HHHHHHHHHHGGGEEEEEEESSBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTTS---SSSGHHHH-TSSSS
T ss_pred HHHHHHHhhcCCcEEEEEEeccccccCccccccchhhehcccccccccceecccccccccccC---Cccceecc-cccCc
Confidence 122222222 233334443222333454 4567788999999999999999999999995544 12223332 33445
Q ss_pred EEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhC
Q psy14428 377 LCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILS 438 (583)
Q Consensus 377 vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~ 438 (583)
++++ +|.++ .|+-+|.+++ . +++.+.+........++.++++..++.+.|+
T Consensus 241 iv~~---gK~l~-gG~p~sav~~--~-----~~i~~~~~~~~~~~T~~g~p~~~aaa~~~l~ 291 (339)
T PF00202_consen 241 IVTF---GKGLG-GGLPISAVLG--S-----EEIMEAFQPGSHGSTFGGNPLSCAAALATLE 291 (339)
T ss_dssp EEEE---EGGGG-TTSSEEEEEE--E-----HHHHTTSCTTSSTCTTTT-HHHHHHHHHHHH
T ss_pred cccc---ccchh-hhhhcccccc--c-----chhhccccccccccccccchHhhhhhhhHHH
Confidence 5544 69998 7899999999 5 5677766444333455566777776666554
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C .... |
| >PRK09221 beta alanine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=7.3e-05 Score=80.75 Aligned_cols=253 Identities=13% Similarity=0.031 Sum_probs=139.3
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCC-CCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCC
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIG-GDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGIS 239 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~-G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G 239 (583)
.+...+|+..|.+....|.- .|.+.+++.+.++.- .|.+.. -..+....+|+.+.+... -..+++.. +++
T Consensus 47 dG~~ylD~~~g~~~~~lGh~--~p~v~~ai~~ql~~l---~~~~~~~~~~~~~~~la~~L~~~~p--~~~~~v~f--~~s 117 (445)
T PRK09221 47 DGRKILDGTAGLWCCNAGHG--RPEIVEAVARQAATL---DYAPAFQMGHPLAFELAERLAELAP--GGLDHVFF--TNS 117 (445)
T ss_pred CCCEEEEccccHhhccCCCC--CHHHHHHHHHHHHhc---cCccccccCCHHHHHHHHHHHHhCC--CCCCEEEE--eCC
Confidence 45577899888776666643 467777776666531 111111 112333445555543221 11368999 999
Q ss_pred chhHHHHHHHHHHHhC-----CCCCEEEEcCCCChhhHHHHhh-cC------------CeEEEEeccc-CC--CCCC---
Q psy14428 240 GSGSLRVGTAFLERFY-----PGVKTVYFPTPTWNGHVRFCTD-SR------------LNVGAYRYFD-NK--TNGL--- 295 (583)
Q Consensus 240 ~~~al~l~~~~l~~~~-----~~gd~Vlv~~P~y~~~~~~~~~-~G------------~~~~~v~~~d-~~--~~g~--- 295 (583)
|++|.+.+..+.+... +...+|+...-+|.+.....-. .| ..+..+|... .. .++.
T Consensus 118 GseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (445)
T PRK09221 118 GSESVDTALKIALAYHRARGQGTRTRLIGRERGYHGVGFGGISVGGIVNNRKMFGGLLPGVDHLPHTLDLPENAFSKGQP 197 (445)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCccchhhhccCCChhhhhccCCCCCCCeEeCCCccccccccCCChH
Confidence 9999998766555442 1135788888787665321111 11 1122233210 00 0111
Q ss_pred -----ChhhHHHHHHcCC-CCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHH
Q psy14428 296 -----DFAGMMEDIKAMP-ERSILFLQTSSHNPTGVD-LSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLR 368 (583)
Q Consensus 296 -----d~~~l~~~l~~~~-~~~~~i~i~~p~NPTG~~-~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~ 368 (583)
..+.+++.++... ++..++++-.-+.-.|.. .+++-+++|.++|+++|+++|.||+...|..-+ ......
T Consensus 198 ~~~~~~~~~l~~~i~~~~~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG---~~~~~~ 274 (445)
T PRK09221 198 EHGAELADDLERLVALHDASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFGRLG---AAFAAE 274 (445)
T ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCCcCc---hhhHHH
Confidence 1245566665432 344455544344444653 467789999999999999999999998774333 111222
Q ss_pred HHHHhcCcEEEEecCcccccccC-ccceEEEEEcCCchhHHHHHHHHHHH-------HhccccCCChHHHHHHHHHh
Q psy14428 369 YFAKEVGQLCLAQSFSKNMGLYG-ERVGTFSVLTPTSDETERIMSQLKIL-------IRGFYSNPPIHGARIVTEIL 437 (583)
Q Consensus 369 ~~~~~~~~vi~i~S~SK~~~l~G-lRiG~lv~~~p~~~~~~~li~~l~~~-------~~~~~~~~s~~~q~~~~~~l 437 (583)
.+ +-.+. +-++||.++ .| +-+|.+++ + +++++.+..- .....++.++++..++.+.+
T Consensus 275 ~~-gv~PD---i~~~gK~l~-gG~~Pi~av~~--~-----~~i~~~~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~L 339 (445)
T PRK09221 275 RF-GVTPD---IITFAKGLT-NGAIPMGAVIA--S-----DEIYDAFMQGPEYAIEFFHGYTYSAHPVACAAGLATL 339 (445)
T ss_pred hc-CCCCC---EEEeccccc-cCcccceeeEE--c-----HHHHHhhccCcccccccccccCCCcCHHHHHHHHHHH
Confidence 21 11122 347899997 56 67999888 5 4777776431 11223445666655555444
|
|
| >PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=6e-05 Score=80.96 Aligned_cols=251 Identities=11% Similarity=0.026 Sum_probs=139.3
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCC--CCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecC
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLD--HEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGI 238 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~--~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~ 238 (583)
.+...+|+..|.+....|.- .|.+.+++.+.+.+... ..+.......+|-+.+++.. +-..+++.+ ++
T Consensus 42 dG~~ylD~~~g~~~~~lGh~--~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~------p~~~~~v~f--~~ 111 (429)
T PRK06173 42 DGRRLIDGMSSWWAALHGYN--HPRLNAAATNQLAKMSHIMFGGFTHEPAVELAQKLLEIL------PPSLNKIFF--AD 111 (429)
T ss_pred CCCEEEEccchHHhccCCCC--CHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHhhC------CCCcCEEEE--eC
Confidence 45667888888766665643 36777777666654111 11112222233444444332 112368999 99
Q ss_pred CchhHHHHHHHHHHHhC-----CCCCEEEEcCCCChhhHH-HHhhcCC-------------eEEEEecccCCCCC-----
Q psy14428 239 SGSGSLRVGTAFLERFY-----PGVKTVYFPTPTWNGHVR-FCTDSRL-------------NVGAYRYFDNKTNG----- 294 (583)
Q Consensus 239 G~~~al~l~~~~l~~~~-----~~gd~Vlv~~P~y~~~~~-~~~~~G~-------------~~~~v~~~d~~~~g----- 294 (583)
+|++|.+.+..+.+... +...+|+...-+|.+... .+...|. .+..+|..+. .++
T Consensus 112 sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~ 190 (429)
T PRK06173 112 SGSVAVEVAMKMALQYQQAKGEVQRTKFATIRSGYHGDTWHAMSVCDPVTGMHGLFNHSLPVQYFLPQPSI-KFGEEWND 190 (429)
T ss_pred CchHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCCcchhhhccCCCchhhhhcccccCCCCeEeCCCCc-ccchhHHH
Confidence 99999998766555441 223578888888876421 1111110 1122322100 011
Q ss_pred CChhhHHHHHHcCCCCcEEEEeCCC-CCCCCCC-CCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHH
Q psy14428 295 LDFAGMMEDIKAMPERSILFLQTSS-HNPTGVD-LSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAK 372 (583)
Q Consensus 295 ~d~~~l~~~l~~~~~~~~~i~i~~p-~NPTG~~-~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~ 372 (583)
-+++.+++.++....+..++++--- +.-.|.. .+++-+++|.++|++||+++|.||+...|...+ .......+ +
T Consensus 191 ~~l~~l~~~i~~~~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG---~~~a~~~~-g 266 (429)
T PRK06173 191 EAIEPLQDLLEQKGDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATGFGRTG---KLFALEHA-G 266 (429)
T ss_pred HHHHHHHHHHHhCCCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchhcCCCcCC---cchHHHhc-C
Confidence 0245566666543344555554431 5555655 789999999999999999999999997764333 11112221 2
Q ss_pred hcCcEEEEecCcccccccCc-cceEEEEEcCCchhHHHHHHHHHHH-----HhccccCCChHHHHHHHHHh
Q psy14428 373 EVGQLCLAQSFSKNMGLYGE-RVGTFSVLTPTSDETERIMSQLKIL-----IRGFYSNPPIHGARIVTEIL 437 (583)
Q Consensus 373 ~~~~vi~i~S~SK~~~l~Gl-RiG~lv~~~p~~~~~~~li~~l~~~-----~~~~~~~~s~~~q~~~~~~l 437 (583)
-.+.++ +|+|.++ .|+ -+|.+++ . +++++.+..- .-...++.++++..++.+.+
T Consensus 267 v~PDiv---~~gK~l~-gG~~p~~a~~~--~-----~~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l 326 (429)
T PRK06173 267 VVPDIM---CIGKALT-GGYLTLSATIT--T-----EAIAQTICSGEAKCFMHGPTFMANPLACAIAAESI 326 (429)
T ss_pred CCCCEE---Eeehhhh-CCccccceEEe--c-----HHHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHH
Confidence 122333 3899997 784 6888887 5 4777776421 11112344566665555544
|
|
| >PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00014 Score=79.00 Aligned_cols=253 Identities=11% Similarity=0.071 Sum_probs=142.1
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCC-CHHHHHHHHHHHhCCCCCCCCCCCeEEEecCC
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGG-DAKFCKLAAQLAYGEDFPAFKDNRLAIVQGIS 239 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G-~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G 239 (583)
.+...+|+..|.+....|.- .|.+.+++.+.++.- .+....+ ..+.+..+|+.+..... -..+++.. +++
T Consensus 54 dG~~ylD~~~g~~~~~lGh~--~p~v~~Ai~~ql~~l---~~~~~~~~~~~~~~~lae~L~~~~p--~~~~~v~f--~~S 124 (460)
T PRK06916 54 NGNEYYDGVSSIWLNVHGHQ--VPELDEAIREQLNKI---AHSTLLGLANVPSILLAEKLIEVVP--EGLKKVFY--SDS 124 (460)
T ss_pred CCCEEEEcchhHHHhhcCCC--CHHHHHHHHHHHHhC---CCccccccCCHHHHHHHHHHHHhCC--CCCCEEEE--eCC
Confidence 45667888877765555543 467777776666541 1111101 12233445555443221 11258889 999
Q ss_pred chhHHHHHHHHHHHh-----CCCCCEEEEcCCCChhhHHHHhh-cCC------------eEEEEecccCC--CCC-----
Q psy14428 240 GSGSLRVGTAFLERF-----YPGVKTVYFPTPTWNGHVRFCTD-SRL------------NVGAYRYFDNK--TNG----- 294 (583)
Q Consensus 240 ~~~al~l~~~~l~~~-----~~~gd~Vlv~~P~y~~~~~~~~~-~G~------------~~~~v~~~d~~--~~g----- 294 (583)
|++|.+.+..+.+.. ..+..+|+...-+|.+....... .|. .+..+|..+.. ..+
T Consensus 125 GseAve~AlklAr~~~~~~g~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~ 204 (460)
T PRK06916 125 GATAVEIAIKMAFQYWQNKGKPKKQRFVTLKNAYHGDTIGAVSVGAIDLFHQVYSSLLFEAIKMPYPYTYRSPYGNDKAE 204 (460)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCcCCcccHHhHhccCCcccccccCCCCCCCEEeCCCcccccccCCChHH
Confidence 999999876655543 12246788888888775322211 111 12223321000 001
Q ss_pred ---CChhhHHHHHHcCCCCcEEEEeCC-CCCCCCCC-CCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHH
Q psy14428 295 ---LDFAGMMEDIKAMPERSILFLQTS-SHNPTGVD-LSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRY 369 (583)
Q Consensus 295 ---~d~~~l~~~l~~~~~~~~~i~i~~-p~NPTG~~-~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~ 369 (583)
-+++.+++.++....+..++++-. .+.-.|.. .+++-+++|.++|+++|+++|.||+.-.|...+ .......
T Consensus 205 ~~~~~~~~l~~~l~~~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~TG~GRtG---~~~a~~~ 281 (460)
T PRK06916 205 IVKKHLEELEELLKEKHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTG---KMFACEH 281 (460)
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCcCc---hhhHHHh
Confidence 124455666654334444444432 25555654 589999999999999999999999998874333 1212222
Q ss_pred HHHhcCcEEEEecCcccccccC-ccceEEEEEcCCchhHHHHHHHHHHH-------HhccccCCChHHHHHHHHHh
Q psy14428 370 FAKEVGQLCLAQSFSKNMGLYG-ERVGTFSVLTPTSDETERIMSQLKIL-------IRGFYSNPPIHGARIVTEIL 437 (583)
Q Consensus 370 ~~~~~~~vi~i~S~SK~~~l~G-lRiG~lv~~~p~~~~~~~li~~l~~~-------~~~~~~~~s~~~q~~~~~~l 437 (583)
+ +-.+.++ +++|.++ .| +-+|.+++ . +++++.+..- .....++.++++..++...+
T Consensus 282 ~-gv~PDiv---~~gK~l~-gG~~Pi~av~~--~-----~ei~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l 345 (460)
T PRK06916 282 E-NVTPDIM---TAGKGLT-GGYLPIAITVT--T-----DEIYNAFYGDYEEQKTFFHGHSYTGNPLGCAVALANL 345 (460)
T ss_pred c-CCCCCee---eeehhhh-cCccccceeee--c-----HHHHHHhhccccccCccccCCCCCCCHHHHHHHHHHH
Confidence 1 2223343 5699998 78 58999999 6 4677766421 11223445666666555554
|
|
| >TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.0001 Score=77.45 Aligned_cols=229 Identities=13% Similarity=0.093 Sum_probs=136.0
Q ss_pred CChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCC-CCCE
Q psy14428 182 VLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYP-GVKT 260 (583)
Q Consensus 182 ~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~-~gd~ 260 (583)
|.+...+++.. . .-.|..+.....|.+.+++.++..+ ++. |..+.++-.++ +..+++ +||+
T Consensus 55 pS~~m~aAM~~--G---DD~Y~gdpSv~~Lee~vael~G~E~--------alp--thqGRgaE~Il---~~~~~~~~g~e 116 (467)
T TIGR02617 55 VTQSMQAAMMR--G---DEAYSGSRSYYALAESVKNIFGYQY--------TIP--THQGRGAEQIY---IPVLIKKREQE 116 (467)
T ss_pred CCHHHHHHHHc--C---CcccccCchHHHHHHHHHHHhCCce--------EEE--CCCCchHHHHH---HHhhccccccc
Confidence 34566666553 1 3458888888999999999998653 455 77777777664 444554 6888
Q ss_pred EEEcCC-----C---ChhhHHHHhhcCCeEEEEecc--------cCCCCCCChhhHHHHHHcCC-CCcEEEEeCCCCCCC
Q psy14428 261 VYFPTP-----T---WNGHVRFCTDSRLNVGAYRYF--------DNKTNGLDFAGMMEDIKAMP-ERSILFLQTSSHNPT 323 (583)
Q Consensus 261 Vlv~~P-----~---y~~~~~~~~~~G~~~~~v~~~--------d~~~~g~d~~~l~~~l~~~~-~~~~~i~i~~p~NPT 323 (583)
+.+..+ . |......+...|+.++.++.. .+....+|++.+++.++... .+.-.+.+.--||-.
T Consensus 117 ~g~~~~~~~v~hn~~fett~g~a~l~G~~~~~l~~~ea~~~~~~~~fkG~~dl~~le~~I~~~g~~~i~~v~~tlt~N~~ 196 (467)
T TIGR02617 117 KGLDRSKMVAFSNYFFDTTQGHSQINGCTARNVYTKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITCNSA 196 (467)
T ss_pred ccccccccccceEEEEecchHHHHHcCceeecccchhhcccccCCCCCCCcCHHHHHHHHhhcCCCCceeeeeeEEEecC
Confidence 876554 2 333345677889888776431 11235789999999997532 111111111112433
Q ss_pred -CCCCCHHHHHHHHHHHHhcCeEEEEeccCC----------CCCCCCCCCchHHHHHHH----HhcCcEEEEecCccccc
Q psy14428 324 -GVDLSEDQWRQLAVVVKQRHLYPFFDMAYL----------GLTSGDFDKDAFSLRYFA----KEVGQLCLAQSFSKNMG 388 (583)
Q Consensus 324 -G~~~s~~~~~~l~~~a~~~~i~iI~De~Y~----------~l~~~~~~~~~~~~~~~~----~~~~~vi~i~S~SK~~~ 388 (583)
|.++|.+.++++.++|++||+.++.|-+-. +-.+.+ .+++.+. +..| .+.-|+||.++
T Consensus 197 GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~-----~si~eI~rE~~~~aD--svt~slsKglg 269 (467)
T TIGR02617 197 GGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKN-----WSIEQITRETYKYAD--MLAMSAKKDAM 269 (467)
T ss_pred CCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcC-----CCHHHHHHHhhccCC--EEEEEcCCCCC
Confidence 679999999999999999999999997521 112222 1333322 2222 45668999775
Q ss_pred ccCccceEEEEEcCCchhHHHHHHHHHHHH-----hccccCCChHHHHHHHHHhCCh
Q psy14428 389 LYGERVGTFSVLTPTSDETERIMSQLKILI-----RGFYSNPPIHGARIVTEILSDP 440 (583)
Q Consensus 389 l~GlRiG~lv~~~p~~~~~~~li~~l~~~~-----~~~~~~~s~~~q~~~~~~l~~~ 440 (583)
. .+|-+++. ++ +...++.++++... -.++.+.+.--..+++.-|.+.
T Consensus 270 A---pvGg~Lag-~d-~~~~~l~~~~~~~~i~~EGf~tYGGlagrd~ea~a~Gl~e~ 321 (467)
T TIGR02617 270 V---PMGGLLCF-KD-DSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDG 321 (467)
T ss_pred C---cccceEEe-cc-hhHHHHHHHHHhhcccccCCcCcCchhHHHHHHHHhhhhhc
Confidence 4 45544441 43 20004444444321 1223455666667776656543
|
Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream. |
| >PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [] | Back alignment and domain information |
|---|
Probab=98.35 E-value=4.2e-05 Score=77.36 Aligned_cols=182 Identities=16% Similarity=0.162 Sum_probs=111.6
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcC-CCChhhHHHH--------
Q psy14428 205 IGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPT-PTWNGHVRFC-------- 275 (583)
Q Consensus 205 ~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~-P~y~~~~~~~-------- 275 (583)
..|-..|.+..|+.++.+... + .-+ -..||+||.++ |..++.|||+.+..+ .-|.....++
T Consensus 53 D~GRd~le~iyA~vfgaE~AL-V-Rpq-----~vSGTHAi~~~---Lfg~LrpGD~ll~~tG~PYDTL~~VIG~~g~~~G 122 (403)
T PF06838_consen 53 DIGRDKLERIYADVFGAEDAL-V-RPQ-----FVSGTHAIALA---LFGVLRPGDELLSITGKPYDTLEEVIGIRGNGPG 122 (403)
T ss_dssp -HHHHHHHHHHHHHCT-SEEE-E-ETT-----S-SHHHHHHHH---HHHH--TT-EEEESSSS--CCHHHHHTSSSSSSS
T ss_pred CccHHHHHHHHHHHhCchhhh-h-ccc-----ccchHHHHHHH---HHhcCCCCCeEEEcCCCchhhHHHHhCCCCCCCC
Confidence 346666666666666543210 1 113 33488999885 445566699988543 3477666665
Q ss_pred --hhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEe-CCCCCCCCCCCCHHHHHHHHHHHHh--cCeEEEEec
Q psy14428 276 --TDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQ-TSSHNPTGVDLSEDQWRQLAVVVKQ--RHLYPFFDM 350 (583)
Q Consensus 276 --~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i-~~p~NPTG~~~s~~~~~~l~~~a~~--~~i~iI~De 350 (583)
+..|++...+|+. + +..+|++.++++++ ++++++++ =+..--+=..++.++++++++++++ .++++++|.
T Consensus 123 SL~e~Gi~Y~~v~L~-~-dg~~D~~~i~~~~~---~~tk~v~IQRSrGYs~R~sl~i~~I~~~i~~vk~~~p~~iifVDN 197 (403)
T PF06838_consen 123 SLKEFGIKYREVPLT-E-DGTIDWEAIKKALK---PNTKMVLIQRSRGYSWRPSLTIEEIKEIIKFVKEINPDVIIFVDN 197 (403)
T ss_dssp STGGGT-EEEE--B--T-TSSB-HHHHHHHHH---TTEEEEEEE-S-TTSSS----HHHHHHHHHHHHHH-TTSEEEEE-
T ss_pred ChHHhCceeEEEeec-C-CCCcCHHHHHHhhc---cCceEEEEecCCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEEEeC
Confidence 5567889999994 3 47899999999994 56666665 3444444456899999999999986 589999999
Q ss_pred cCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCcc--ceEEEEEcCCchhHHHHHHHHHHHHh
Q psy14428 351 AYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGER--VGTFSVLTPTSDETERIMSQLKILIR 419 (583)
Q Consensus 351 ~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlR--iG~lv~~~p~~~~~~~li~~l~~~~~ 419 (583)
+|++|+-.. .+. .-+--+..+|+=|+-| -|+= -||+++ . ++++++......
T Consensus 198 CYGEFvE~~---EP~-------~vGADl~aGSLIKNpG-GgiAptGGYIaG--r-----~~lVe~~a~RLT 250 (403)
T PF06838_consen 198 CYGEFVETQ---EPT-------EVGADLMAGSLIKNPG-GGIAPTGGYIAG--R-----KDLVERAAYRLT 250 (403)
T ss_dssp TTTTTTSSS----GG-------GGT-SEEEEETTSGGG-TTT-SS-EEEEE--S-----HHHHHHHHHHHS
T ss_pred Ccceecccc---Ccc-------ccchhheeccceeCCC-CCccCcCCEEec--h-----HHHHHHHHhhhc
Confidence 999998653 121 2244588999999987 5542 379999 6 689998886543
|
; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F. |
| >PRK06105 aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.0001 Score=80.02 Aligned_cols=265 Identities=14% Similarity=0.099 Sum_probs=146.5
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCC-CCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCC
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNL-DHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGIS 239 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~-~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G 239 (583)
.+...+|+..|.+....|.- .+.+.+++.+.+++.. .... .....+.+..+++.+.+... -.-+++.+ +++
T Consensus 46 dG~~ylD~~~g~~~~~lGh~--~p~i~~Ai~~q~~~~~~~~~~--~~~~~~~~~~lae~L~~~~p--~~~~~v~f--~~S 117 (460)
T PRK06105 46 AGKRYIEGMAGLWSVALGFS--EQRLVEAAARQMKKLPFYHTF--SHKSHGPVIDLAEKLVAMAP--VPMSKVFF--TNS 117 (460)
T ss_pred CCCEEEEcchhHHhccCCCC--CHHHHHHHHHHHHhCCCeecc--cccCCHHHHHHHHHHHHhCC--CCCCEEEE--eCC
Confidence 45678999888776666653 4677777777665411 0111 11123344445555543321 12368898 999
Q ss_pred chhHHHHHHHHHHHhC-----CCCCEEEEcCCCChhhHHHH-hhcCC------------eEEEEecccCCCCC-------
Q psy14428 240 GSGSLRVGTAFLERFY-----PGVKTVYFPTPTWNGHVRFC-TDSRL------------NVGAYRYFDNKTNG------- 294 (583)
Q Consensus 240 ~~~al~l~~~~l~~~~-----~~gd~Vlv~~P~y~~~~~~~-~~~G~------------~~~~v~~~d~~~~g------- 294 (583)
|++|.+.+..+.+... ....+|+...-+|....... ...|. .+..+|..+....+
T Consensus 118 GseAve~AlKlar~~~~~~g~t~r~~il~~~~~yHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 197 (460)
T PRK06105 118 GSEANDTVVKLVWYYNNALGRPEKKKIISRQRGYHGVTIASASLTGLPNNHRSFDLPLDRILHTGCPHYYRFGLPGESEE 197 (460)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCccCCcchhheeccCCcccccccCCCCCCCEEcCCCcccccccCCCChH
Confidence 9999998765543321 11357787777776653221 11111 11222221100000
Q ss_pred ----CChhhHHHHHHcC-CCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHH
Q psy14428 295 ----LDFAGMMEDIKAM-PERSILFLQTSSHNPTGVD-LSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLR 368 (583)
Q Consensus 295 ----~d~~~l~~~l~~~-~~~~~~i~i~~p~NPTG~~-~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~ 368 (583)
...+.+++.+... ..+..++++-.-+.--|.. .+++-+++|.++|++||+++|.||+...|..-+ ......
T Consensus 198 ~~~~~~~~~le~~~~~~~~~~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~~~~~llI~DEv~tG~GRtG---~~f~~~ 274 (460)
T PRK06105 198 AFATRLANELEALILAEGPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTG---NMFGCE 274 (460)
T ss_pred HHHHHHHHHHHHHHHHcCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCeEEEeccccCCCcCc---hhhhHH
Confidence 0124556666432 2344455543334444554 588999999999999999999999998874333 121222
Q ss_pred HHHHhcCcEEEEecCcccccccC-ccceEEEEEcCCchhHHHHHHHHHHHH-------hccccCCChHHHHHHHHH---h
Q psy14428 369 YFAKEVGQLCLAQSFSKNMGLYG-ERVGTFSVLTPTSDETERIMSQLKILI-------RGFYSNPPIHGARIVTEI---L 437 (583)
Q Consensus 369 ~~~~~~~~vi~i~S~SK~~~l~G-lRiG~lv~~~p~~~~~~~li~~l~~~~-------~~~~~~~s~~~q~~~~~~---l 437 (583)
.+ +-.+. +-+|||.++ .| +-+|.+++ + +++++.+.... ....++.++++..++.+. +
T Consensus 275 ~~-~v~PD---i~~~gK~lg-gG~~P~~av~~--~-----~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~i 342 (460)
T PRK06105 275 TF-GIKPD---ILVMSKQLS-SSYQPLSAVLM--N-----EKVYDPIADESGKIGTFGHGFTASGHPVAAAVALENLAII 342 (460)
T ss_pred hc-CCCCC---eeeeecccc-cCcccceEEEE--c-----HHHHHHHhcccccCcccccCCCCCCCHHHHHHHHHHHHHH
Confidence 21 21222 347799998 66 58999999 6 57777765321 122445666666655444 4
Q ss_pred CChhhhhhhhh
Q psy14428 438 SDPKLKAQCDE 448 (583)
Q Consensus 438 ~~~~~~~~~~~ 448 (583)
+++.+.++.++
T Consensus 343 ~~~~l~~~v~~ 353 (460)
T PRK06105 343 EERDLVGNAAE 353 (460)
T ss_pred HhccHHHHHHH
Confidence 44444444433
|
|
| >TIGR01364 serC_1 phosphoserine aminotransferase | Back alignment and domain information |
|---|
Probab=98.34 E-value=7.3e-05 Score=78.18 Aligned_cols=237 Identities=12% Similarity=0.064 Sum_probs=135.1
Q ss_pred ChHHHHHHHHHhcc---CCCCCCCCCCCCH---HHHHHHHHHHhCCCCCCCCCCCeEEEecCC-chhHHHHHHHHHHHhC
Q psy14428 183 LPSVKEAERRIYEK---NLDHEYANIGGDA---KFCKLAAQLAYGEDFPAFKDNRLAIVQGIS-GSGSLRVGTAFLERFY 255 (583)
Q Consensus 183 ~~~v~~a~~~~~~~---~~~~~Y~~~~G~~---~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G-~~~al~l~~~~l~~~~ 255 (583)
|..+.+++.+...+ .....|....-.+ ++-+.+.+.++.-.+. -+.++|++ ++| +++|++.+ +..+.
T Consensus 4 p~~v~~~~~~~~~~~~~~~~~~~~~~hr~~~f~~~~~~~~~~l~~l~~~-~~~~~v~~--~~gsgT~a~ea~---~~nl~ 77 (349)
T TIGR01364 4 PEEVLEQAQKELLNFNGTGMSVMEISHRSKEFEAVANEAESDLRELLNI-PDNYEVLF--LQGGATGQFAAV---PLNLL 77 (349)
T ss_pred CHHHHHHHHHHHhCccCCCccccccCCCchHHHHHHHHHHHHHHHHhCC-CCCceEEE--EcCCchHHHHHH---HHhcC
Confidence 35566665555542 1122233333344 3323333333333332 12346888 777 99999985 44455
Q ss_pred CCCCEEEEcCCC-Chh-hHHHHhhcCCeEEEEecccCC---CCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHH
Q psy14428 256 PGVKTVYFPTPT-WNG-HVRFCTDSRLNVGAYRYFDNK---TNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSED 330 (583)
Q Consensus 256 ~~gd~Vlv~~P~-y~~-~~~~~~~~G~~~~~v~~~d~~---~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~ 330 (583)
++||+|++..-+ |.. +..+++..|+ +..+.. ++. ...++++.++. .++.+++.++...|.||+..+
T Consensus 78 ~~~~~~l~i~~G~fg~r~~~~a~~~g~-~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~v~~th~ETstGv~~~-- 148 (349)
T TIGR01364 78 AEGKVADYIVTGAWSKKAAKEAKKYGV-VNVVAS-GKEGNYTKIPDPSTWEI-----SEDAAYVHYCANETIHGVEFR-- 148 (349)
T ss_pred CCCCeEEEEECCHHHHHHHHHHHHhCC-cEEEec-cccCCCCCCCCHHhcCC-----CCCCCEEEEcCCCCcccEecc--
Confidence 568988877655 332 3567788898 766665 221 12344443321 357889999999999999765
Q ss_pred HHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHH
Q psy14428 331 QWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERI 410 (583)
Q Consensus 331 ~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~l 410 (583)
++++.+++++|+|-+-.--... ..+. ..+ +++.|.-|.+|.|| +|.+++ + +++
T Consensus 149 ------~l~~~~~~l~iVDavss~g~~~------id~~----~~d--~~~~ssqK~lgP~G--lg~l~~--s-----~~~ 201 (349)
T TIGR01364 149 ------ELPDVKNAPLVADMSSNILSRP------IDVS----KFG--LIYAGAQKNIGPAG--LTVVIV--R-----KDL 201 (349)
T ss_pred ------eecccCCCeEEEEccccccCcc------CCHH----Hcc--EEEEecccccCCCc--eEEEEE--C-----HHH
Confidence 4566689999999985433221 1122 223 88888899999787 699988 6 466
Q ss_pred HHHHHHH----------H--hccccCCChHHHHHHHHHhC---Ch-hhhhhhhhHHHHHHHHHHHHh
Q psy14428 411 MSQLKIL----------I--RGFYSNPPIHGARIVTEILS---DP-KLKAQCDETERIMSQLKILIR 461 (583)
Q Consensus 411 i~~l~~~----------~--~~~~~~~s~~~q~~~~~~l~---~~-~~~~~~~~~~~~~~~l~~~~r 461 (583)
++++... . .....+++...-.++.+.++ +. .++...++.++..+.+.+.++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~ 268 (349)
T TIGR01364 202 LGRASRITPSMLNYKIHAENDSMYNTPPTFAIYVSGLVFKWLKEQGGVKAIEKRNQAKAQLLYDTID 268 (349)
T ss_pred HhhcccCCCCcchHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 6554221 1 12223445544444444433 33 466655555555555544443
|
This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266). |
| >PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00018 Score=78.13 Aligned_cols=264 Identities=9% Similarity=0.013 Sum_probs=149.8
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhcc-CCC--CCCCCCCCCHHHHHHHHHHHhCCCCCC---CCCCCeEE
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEK-NLD--HEYANIGGDAKFCKLAAQLAYGEDFPA---FKDNRLAI 234 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~-~~~--~~Y~~~~G~~~Lr~aia~~~~~~~g~~---~~~~~I~i 234 (583)
.+...+|+..|.+....|.- .+.+.+++.+.++. ... ..+. .+.+..+++.+....... -.-+++..
T Consensus 62 dG~~ylD~~~g~~~~~lGh~--~p~i~~Ai~~q~~~l~~~~~~~~~-----~~~~~~lae~L~~~~p~~~~~~~~~~v~f 134 (472)
T PRK08742 62 DGRRYLDAVSSWWTNLFGHA--EPRIGAAIAAQAGELEQVMLAGFT-----HEPAVQLAEQLLAIAPRQDGRAPLSKVFY 134 (472)
T ss_pred CCCEEEEcCccHHhccCCCC--CHHHHHHHHHHHHhCCCccccccC-----CHHHHHHHHHHHHhCCCcccCCCCCEEEE
Confidence 45678999888877666653 36777777666543 101 1121 233455555554322110 12358999
Q ss_pred EecCCchhHHHHHHHHHHHhC-----CCCCEEEEcCCCChhhHHHHhhc-CC------------eEEEEecccCC--CCC
Q psy14428 235 VQGISGSGSLRVGTAFLERFY-----PGVKTVYFPTPTWNGHVRFCTDS-RL------------NVGAYRYFDNK--TNG 294 (583)
Q Consensus 235 ~~t~G~~~al~l~~~~l~~~~-----~~gd~Vlv~~P~y~~~~~~~~~~-G~------------~~~~v~~~d~~--~~g 294 (583)
+++|++|.+.+..+.+... ....+|+...-+|.+........ |. .+..+|..+.. ..+
T Consensus 135 --~~sGSEAvE~AlKlAr~~~~~~g~~~r~~ii~~~~syHG~t~gals~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~ 212 (472)
T PRK08742 135 --ADNGSAGVEVALKMAFHYFHNRGEHRRTRFIALENGYHGETIGALAVGDIPLYRRVYAPLLLESLFAPSPDAYLAEPG 212 (472)
T ss_pred --eCCchHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCchhhhhccCCcccccccCCCCCCCEEeCCCCccccccC
Confidence 9999999998866655542 21357888888877654322221 11 12223321110 011
Q ss_pred C--------ChhhHHHHHHcCCCCcEEEEeCCC--CCCCCC-CCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCc
Q psy14428 295 L--------DFAGMMEDIKAMPERSILFLQTSS--HNPTGV-DLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKD 363 (583)
Q Consensus 295 ~--------d~~~l~~~l~~~~~~~~~i~i~~p--~NPTG~-~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~ 363 (583)
. +++.+++.++.......++++ -| +.-.|. ..+++-++++.++|+++|+++|.||+.-.|..-+ .
T Consensus 213 ~~~~~~~~~~~~~l~~~~~~~~~~iAAvI~-EPviqg~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~TGfGRtG---~ 288 (472)
T PRK08742 213 QSAEDYALQAADALQALFEQSPGEICALIL-EPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGFGRTG---T 288 (472)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCceEEEEE-ccccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCc---c
Confidence 1 234555666433344444444 44 555565 5688999999999999999999999998886543 1
Q ss_pred hHHHHHHHHhcCcEEEEecCcccccccCc-cceEEEEEcCCchhHHHHHHHHHHH------HhccccCCChHHHHHHHHH
Q psy14428 364 AFSLRYFAKEVGQLCLAQSFSKNMGLYGE-RVGTFSVLTPTSDETERIMSQLKIL------IRGFYSNPPIHGARIVTEI 436 (583)
Q Consensus 364 ~~~~~~~~~~~~~vi~i~S~SK~~~l~Gl-RiG~lv~~~p~~~~~~~li~~l~~~------~~~~~~~~s~~~q~~~~~~ 436 (583)
......+ +-.+.+++ ++|.++ .|+ -+|.+++ . +++++.+... .....++.++++..++.+.
T Consensus 289 ~~a~e~~-gv~PDiv~---~gKgl~-gG~~Plaav~~--~-----~ei~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~ 356 (472)
T PRK08742 289 LFACEQA-GVMPDLLC---LSKGLT-GGFLPLSAVLA--T-----QQLYDAFLDDSRERAFLHSHSYTGNPLACAAALAT 356 (472)
T ss_pred chHHHhc-CCCCCEEE---Eccccc-CCCCCcceeec--c-----HHHHHHhhccCccCccCcCCCCCccHHHHHHHHHH
Confidence 2222222 22334444 499998 784 8999998 5 5777766421 1122345566666655554
Q ss_pred h---CChhhhhhhhhH
Q psy14428 437 L---SDPKLKAQCDET 449 (583)
Q Consensus 437 l---~~~~~~~~~~~~ 449 (583)
+ +++.+..+..+.
T Consensus 357 L~~i~~~~l~~~~~~~ 372 (472)
T PRK08742 357 LDIFADDDVIARNQPT 372 (472)
T ss_pred HHHHHHCCHHHHHHHH
Confidence 4 344444443333
|
|
| >PRK07481 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00017 Score=78.05 Aligned_cols=255 Identities=14% Similarity=0.090 Sum_probs=140.1
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCC-CCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCC
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANI-GGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGIS 239 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~-~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G 239 (583)
.+...+|+..|.+....|.- .+.+.+++.+.++.... +... .-..+.+..+|+.+....+ +-..+++.+ +++
T Consensus 40 dG~~ylD~~~g~~~~~lGh~--~p~v~~Ai~~ql~~~~~--~~~~~~~~~~~~~~lae~L~~~~~-~~~~~~v~f--~~s 112 (449)
T PRK07481 40 DGKKLLDGVGGLWNVNVGHN--REEVKEAIVRQLDELEY--YSTFDGTTHPRAIELSYELIDMFA-PEGMRRVFF--SSG 112 (449)
T ss_pred CCCEEEECchhHHhhcCCCC--CHHHHHHHHHHHHhccc--eecccccCCHHHHHHHHHHHHhcC-CCCCCEEEE--cCc
Confidence 45567888887776666653 36777777766654111 1110 0112344555555544321 112358899 999
Q ss_pred chhHHHHHHHHHHHhC-----CCCCEEEEcCCCChhhHHHHhhc-C------------CeEEEEecccCC--CCC-CChh
Q psy14428 240 GSGSLRVGTAFLERFY-----PGVKTVYFPTPTWNGHVRFCTDS-R------------LNVGAYRYFDNK--TNG-LDFA 298 (583)
Q Consensus 240 ~~~al~l~~~~l~~~~-----~~gd~Vlv~~P~y~~~~~~~~~~-G------------~~~~~v~~~d~~--~~g-~d~~ 298 (583)
|++|.+.+..+.+... +...+|+...-+|.+...-.... | ..+..++..+.. .++ -|++
T Consensus 113 GsEAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~ 192 (449)
T PRK07481 113 GSDSVETALKLARQYWKVRGQPERTKFISLKQGYHGTHFGGASVNGNTVFRRNYEPLLPGCFHVETPWLYRNPFTEQDPE 192 (449)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhccCCCcccccccCCCCCCCEEeCCCcccccccCCCCHH
Confidence 9999998866665542 11357888887777643211111 1 012222220000 011 1333
Q ss_pred hH--------HHHHHcC-CCCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHH
Q psy14428 299 GM--------MEDIKAM-PERSILFLQTSSHNPTGV-DLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLR 368 (583)
Q Consensus 299 ~l--------~~~l~~~-~~~~~~i~i~~p~NPTG~-~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~ 368 (583)
.+ ++.+... .++..++++-.-+.-.|. ..+++-+++|.++|+++|+++|.||+...|..-+ ......
T Consensus 193 ~~~~~~~~~le~~i~~~~~~~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG---~~~a~~ 269 (449)
T PRK07481 193 ELARICARLLEREIAFQGPDTIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFGRTG---SWFGSR 269 (449)
T ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCcCCccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcCc---hhhHhh
Confidence 32 3333212 234444544333433455 4578889999999999999999999998885433 111122
Q ss_pred HHHHhcCcEEEEecCcccccccC-ccceEEEEEcCCchhHHHHHHHHHHH-------HhccccCCChHHHHHHHHHh
Q psy14428 369 YFAKEVGQLCLAQSFSKNMGLYG-ERVGTFSVLTPTSDETERIMSQLKIL-------IRGFYSNPPIHGARIVTEIL 437 (583)
Q Consensus 369 ~~~~~~~~vi~i~S~SK~~~l~G-lRiG~lv~~~p~~~~~~~li~~l~~~-------~~~~~~~~s~~~q~~~~~~l 437 (583)
.+ +-.+.++ +++|.++ .| +-+|.+++ . +++++.+... .....++.++++..++.+.+
T Consensus 270 ~~-gv~PDiv---~~gKgl~-gG~~Pi~av~~--~-----~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L 334 (449)
T PRK07481 270 GW-GVKPDIM---CLAKGIT-SGYVPLGATMV--N-----ARIADAFEANADFGGAIMHGYTYSGHPVACAAALATL 334 (449)
T ss_pred hc-CCCCCEE---EEeeccc-CCCcCceEEEE--c-----HHHHHHHhccCccccccccCCCCCCCHHHHHHHHHHH
Confidence 21 2223344 3499998 78 58999999 6 5777777531 11224455666666555544
|
|
| >PRK07036 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00026 Score=76.94 Aligned_cols=255 Identities=11% Similarity=0.095 Sum_probs=141.2
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCC--CCHHHHHHHHHHHhCCCCCCCCCCCeEEEecC
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIG--GDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGI 238 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~--G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~ 238 (583)
.+...+|+..|.+....|.- .|.+.+++.+.+... .|.... -..+.+..+|+.+.... +-.-+++.+ ++
T Consensus 49 dG~~ylD~~~g~~~~~lGh~--~p~v~~Ai~~q~~~~---~~~~~~~~~~~~~~~~lae~L~~~~--p~~~~~v~f--~~ 119 (466)
T PRK07036 49 DGRRYLDGIGGMWCVNVGYG--REEMADAIADQARRL---PYYTPFGDMTNAPAAELAAKLAELA--PGDLNHVFL--TT 119 (466)
T ss_pred CCCEEEECcccHHhhcCCCC--CHHHHHHHHHHHHhC---cccccccccCCHHHHHHHHHHHHhC--CCCcCEEEE--eC
Confidence 35567888777766555543 467777776665431 111111 12244555666554322 112358899 99
Q ss_pred CchhHHHHHHHHHHHhC-----CCCCEEEEcCCCChhhHHHHhhc-CC------------eEEEEecccCC--CCCCC--
Q psy14428 239 SGSGSLRVGTAFLERFY-----PGVKTVYFPTPTWNGHVRFCTDS-RL------------NVGAYRYFDNK--TNGLD-- 296 (583)
Q Consensus 239 G~~~al~l~~~~l~~~~-----~~gd~Vlv~~P~y~~~~~~~~~~-G~------------~~~~v~~~d~~--~~g~d-- 296 (583)
+|++|.+.+..+.+... ....+|+...-+|.......... |. .+..+|..+.. ..+..
T Consensus 120 sGseAve~AlklAr~~~~~~g~t~r~~Ii~~~~~YHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 199 (466)
T PRK07036 120 GGSTAVDSALRFVHYYFNVRGRPAKKHIITRGDAYHGSTYLTASLTGKAADRTEFDYASDLVHHLSSPNPYRRPAGMSEA 199 (466)
T ss_pred CchHHHHHHHHHHHHHHHhcCCCCccEEEEEcCccCCccHhhhcccCCCcccccccCCCCCcEEecCCcccccccCCChH
Confidence 99999998766654441 11257888777777654222111 11 12223321110 01211
Q ss_pred ------hhhHHHHHHcC-CCCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHH
Q psy14428 297 ------FAGMMEDIKAM-PERSILFLQTSSHNPTGV-DLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLR 368 (583)
Q Consensus 297 ------~~~l~~~l~~~-~~~~~~i~i~~p~NPTG~-~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~ 368 (583)
.+.+++.+... .+...++++-.-+.-.|. ..+++-+++|.++|++||+++|.||+...|.--+ ......
T Consensus 200 ~~~~~~~~~~~~~i~~~~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG---~~~~~~ 276 (466)
T PRK07036 200 AFCDFLVDEFEDKILSLGADNIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGRLG---HFFASE 276 (466)
T ss_pred HHHHHHHHHHHHHHHHcCCCceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcCc---hhhhhh
Confidence 12344444332 234444444333444455 4578899999999999999999999998884332 111222
Q ss_pred HHHHhcCcEEEEecCcccccccC-ccceEEEEEcCCchhHHHHHHHHHHH-------HhccccCCChHHHHHHHHHhC
Q psy14428 369 YFAKEVGQLCLAQSFSKNMGLYG-ERVGTFSVLTPTSDETERIMSQLKIL-------IRGFYSNPPIHGARIVTEILS 438 (583)
Q Consensus 369 ~~~~~~~~vi~i~S~SK~~~l~G-lRiG~lv~~~p~~~~~~~li~~l~~~-------~~~~~~~~s~~~q~~~~~~l~ 438 (583)
...+-.+.+ -+++|.++ .| +-+|.+++ . +++++.+... .....++.++++..++.+.++
T Consensus 277 ~~~gv~PDi---vt~gK~l~-gG~~Pi~av~~--~-----~~i~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~Le 343 (466)
T PRK07036 277 AVFGIQPDI---ITFAKGLT-SGYQPLGAVII--S-----ERLLDVISGPNAKGNVFTHGFTYSGHPVACAAALKNIE 343 (466)
T ss_pred hhcCCCCCE---EEEccccc-cCccccEEEEE--c-----HHHHHHHhcccCcCcccccCCCCCCCHHHHHHHHHHHH
Confidence 111212233 35699998 78 48999999 6 5787776531 111244556777666665543
|
|
| >PRK07483 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00019 Score=77.60 Aligned_cols=264 Identities=13% Similarity=0.113 Sum_probs=146.2
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCC-CCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCC
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANI-GGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGIS 239 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~-~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G 239 (583)
.+...+|+..|.+....|.- .|.+.+++.+.++.. .|... .-..+....+|+.+..... -..+++.. +++
T Consensus 28 dG~~ylD~~~g~~~~~lGh~--~p~v~~av~~ql~~~---~~~~~~~~~~~~~~~lae~L~~~~p--~~~~~v~f--~~s 98 (443)
T PRK07483 28 TGKRYLDASGGAAVSCLGHS--HPRVIAAIHAQIDRL---AYAHTSFFTTEPAEALADRLVAAAP--AGLEHVYF--VSG 98 (443)
T ss_pred CCCEEEEcCccHhhhccCCC--CHHHHHHHHHHHHhc---cCccccccCCHHHHHHHHHHHHhCC--CCCCEEEE--cCC
Confidence 45677899888777666653 467777777766542 11111 0112344556666543221 12368999 999
Q ss_pred chhHHHHHHHHHHHhC-----CCCCEEEEcCCCChhhHHH-HhhcCC------------eEEEEecccCCCC---CCC--
Q psy14428 240 GSGSLRVGTAFLERFY-----PGVKTVYFPTPTWNGHVRF-CTDSRL------------NVGAYRYFDNKTN---GLD-- 296 (583)
Q Consensus 240 ~~~al~l~~~~l~~~~-----~~gd~Vlv~~P~y~~~~~~-~~~~G~------------~~~~v~~~d~~~~---g~d-- 296 (583)
|++|.+.+..+.+... +...+|+...-+|...... ....|. .+..++....... ..+
T Consensus 99 GsEAve~AlklAr~~~~~~g~~~r~~Ii~~~~~YHG~t~~a~s~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 178 (443)
T PRK07483 99 GSEAVEAALKLARQYFVEIGQPQRRHFIARRQSYHGNTLGALAIGGNAWRREPFAPLLIEAHHVSPCYAYREQRAGESDE 178 (443)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcCHHHhhhcCCcccccccCCCCCCCEEeCCCccccccccCCCHH
Confidence 9999998866655541 2135688777777665321 111110 1122221000000 000
Q ss_pred ------hhhHHHHHHcC-CCCcEEEEeCCCCC-CCC-CCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHH
Q psy14428 297 ------FAGMMEDIKAM-PERSILFLQTSSHN-PTG-VDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSL 367 (583)
Q Consensus 297 ------~~~l~~~l~~~-~~~~~~i~i~~p~N-PTG-~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~ 367 (583)
++.+++.+... .+...++++-.-+- --| ...+++-+++|.++|++||+++|.||+...|..-+ .....
T Consensus 179 ~~~~~~~~~l~~~~~~~~~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG---~~~a~ 255 (443)
T PRK07483 179 AYGQRLADELEAKILELGPDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMCGMGRTG---TLFAC 255 (443)
T ss_pred HHHHHHHHHHHHHHHhcCCCceEEEEEeCcccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEecceeCcccCc---HHHHH
Confidence 13455545432 23444444432231 124 45678899999999999999999999998885433 12222
Q ss_pred HHHHHhcCcEEEEecCcccccccCc-cceEEEEEcCCchhHHHHHHHHHHHH----hccccCCChHHHHHHHHHh---CC
Q psy14428 368 RYFAKEVGQLCLAQSFSKNMGLYGE-RVGTFSVLTPTSDETERIMSQLKILI----RGFYSNPPIHGARIVTEIL---SD 439 (583)
Q Consensus 368 ~~~~~~~~~vi~i~S~SK~~~l~Gl-RiG~lv~~~p~~~~~~~li~~l~~~~----~~~~~~~s~~~q~~~~~~l---~~ 439 (583)
..+ +-.+.++ +++|.++ .|+ -+|.+++ . +++.+.+.... ....++.++++..++.+.+ ++
T Consensus 256 ~~~-gv~PDiv---~~gK~l~-gG~~Pi~av~~--~-----~~i~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~l~~i~~ 323 (443)
T PRK07483 256 EED-GVAPDLV---TIAKGLG-AGYQPIGAVLA--S-----DRIYDAIADGSGFFQHGHTYLGHATACAAALAVQRVIAE 323 (443)
T ss_pred hhc-CCCCCee---eehhhhc-cCccccEEEEE--c-----HHHHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHHh
Confidence 222 2223344 3599998 786 9999999 6 47777775321 1124455666666555554 34
Q ss_pred hhhhhhhhh
Q psy14428 440 PKLKAQCDE 448 (583)
Q Consensus 440 ~~~~~~~~~ 448 (583)
+.+..+..+
T Consensus 324 ~~l~~~~~~ 332 (443)
T PRK07483 324 DGLLANVRA 332 (443)
T ss_pred cCHHHHHHH
Confidence 444444333
|
|
| >PRK07678 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00018 Score=77.90 Aligned_cols=253 Identities=10% Similarity=-0.024 Sum_probs=140.5
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
.+...+|+..|.+....|.- .+.+.+++.+.++.... +...... +....+|+.+....+. .+++.+ +++|
T Consensus 45 dG~~ylD~~~g~~~~~lGh~--~p~v~~ai~~q~~~~~~--~~~~~~~-~~~~~lae~l~~~~~~---~~~v~f--~~sG 114 (451)
T PRK07678 45 QGNRYLDGMSGLWCVNVGYG--RKELAEAAYEQLKTLSY--FPLTQSH-EPAIKLAEKLNEWLGG---EYVIFF--SNSG 114 (451)
T ss_pred CCCEEEEccccHHhhcCCCC--CHHHHHHHHHHHHhcCc--cccccCC-HHHHHHHHHHHHhCCC---CCEEEE--eCCc
Confidence 45667888887776666643 36777777666654111 1111122 2233444444332211 257888 9999
Q ss_pred hhHHHHHHHHHHHhC-----CCCCEEEEcCCCChhhHHHHhh-cCC------------eEEEEecccCCC--CCC-----
Q psy14428 241 SGSLRVGTAFLERFY-----PGVKTVYFPTPTWNGHVRFCTD-SRL------------NVGAYRYFDNKT--NGL----- 295 (583)
Q Consensus 241 ~~al~l~~~~l~~~~-----~~gd~Vlv~~P~y~~~~~~~~~-~G~------------~~~~v~~~d~~~--~g~----- 295 (583)
++|.+.+..+.+... +...+|+...-+|.+....... .|. .+..+|..+... ++.
T Consensus 115 seA~e~AlklAr~~t~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (451)
T PRK07678 115 SEANETAFKIARQYHAQKGEPHRYKFISRYRAYHGNSMGALAATGQAQRKYKYEPLAPGFLHVPPPDCYRMPGIESEDIY 194 (451)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhhcCCCcccccccCCCCCCCEEeCCCccccccccCChHHH
Confidence 999998766655542 1125788888777765432221 111 122233211100 000
Q ss_pred C---hhhHHHHHHcC-CCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHH
Q psy14428 296 D---FAGMMEDIKAM-PERSILFLQTSSHNPTGVD-LSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYF 370 (583)
Q Consensus 296 d---~~~l~~~l~~~-~~~~~~i~i~~p~NPTG~~-~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~ 370 (583)
+ .+.+++.++.. .++..++++-.-+.--|.+ .+++-++++.++|++||+++|.||+.-.|..-+ .......+
T Consensus 195 ~~~~~~~l~~~~~~~~~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG---~~~~~~~~ 271 (451)
T PRK07678 195 DLECVKEIDRVMTWELSETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTG---KAFGFMNY 271 (451)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhcCCcCc---hhHHHHhc
Confidence 1 12244445422 3344555543333334544 578899999999999999999999998885433 12222222
Q ss_pred HHhcCcEEEEecCcccccccC-ccceEEEEEcCCchhHHHHHHHHHHH------HhccccCCChHHHHHHHHHhC
Q psy14428 371 AKEVGQLCLAQSFSKNMGLYG-ERVGTFSVLTPTSDETERIMSQLKIL------IRGFYSNPPIHGARIVTEILS 438 (583)
Q Consensus 371 ~~~~~~vi~i~S~SK~~~l~G-lRiG~lv~~~p~~~~~~~li~~l~~~------~~~~~~~~s~~~q~~~~~~l~ 438 (583)
+-.+.++ +|+|.++ .| +-+|.+++ . +++++.+..- ....+++.++++..++.+.|+
T Consensus 272 -gv~PDiv---t~gK~lg-gG~~Pi~av~~--~-----~~i~~~~~~~~~~~~~~h~~T~~gnp~~~aaa~a~l~ 334 (451)
T PRK07678 272 -GVKPDII---TMAKGIT-SAYLPLSATAV--K-----KEIYEAFKGKGEYEHFRHVNTFGGNPAACALALKNLE 334 (451)
T ss_pred -CCCCCEE---Eeecccc-cCCcceeEEEE--c-----HHHHHHHhccCcccccccCCCCCcCHHHHHHHHHHHH
Confidence 2223333 6799998 67 69999999 6 5787777531 112344556666666555543
|
|
| >PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00018 Score=78.09 Aligned_cols=266 Identities=12% Similarity=0.061 Sum_probs=142.4
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCC-CCeEEEecCC
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKD-NRLAIVQGIS 239 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~-~~I~i~~t~G 239 (583)
.+...+|+..|.+....|.- .+.+.+++.+.+++..... ...-..+.+..+|+.+.......... +++.+ -+++
T Consensus 61 dG~~ylD~~~g~~~~~lGh~--~p~v~~Ai~~ql~~~~~~~--~~~~~~~~~~~la~~L~~~~p~~~~~~~~v~f-~~~S 135 (464)
T PRK06938 61 EGRQFIDCLAGAGTLALGHN--HPVVIEAIQQVLADELPLH--TLDLTTPVKDQFVQDLFASLPEAFAREAKIQF-CGPT 135 (464)
T ss_pred CCCEEEEccCCccccccCCC--CHHHHHHHHHHHHhhhccc--ccccCCHHHHHHHHHHHHhCcccccccceEEE-eCCC
Confidence 45677898888776666653 4677777776664321111 10011233444444443321111111 25544 1468
Q ss_pred chhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhh-cC------------CeEEEEecccCC--CCC--------CC
Q psy14428 240 GSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTD-SR------------LNVGAYRYFDNK--TNG--------LD 296 (583)
Q Consensus 240 ~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~-~G------------~~~~~v~~~d~~--~~g--------~d 296 (583)
|++|.+.+..+.+.... ..+|+...-+|.+....... .| -.+..+|..+.. .++ .+
T Consensus 136 GSEAve~AlklAr~~tg-r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 214 (464)
T PRK06938 136 GTDAVEAALKLVKTATG-RSTVLSFQGGYHGMSQGALSLMGNLGPKKPLGALLPGVQFLPYPYDYRCPFGLGGEAGVRAN 214 (464)
T ss_pred cHHHHHHHHHHHHHhhC-CCeEEEECCccCCccHHHHhhcCCccccccCCCCCCCcEEeCCCccccccccCchhhHHHHH
Confidence 89999987666555433 46788877777765332221 11 012333331110 001 12
Q ss_pred hhhHHHHHHcCC---CCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHH
Q psy14428 297 FAGMMEDIKAMP---ERSILFLQTSSHNPTGV-DLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAK 372 (583)
Q Consensus 297 ~~~l~~~l~~~~---~~~~~i~i~~p~NPTG~-~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~ 372 (583)
.+.+++.+++.. ....++++-.-+---|. ..+++-++++.++|+++|+++|.||+...|.--+ .......+ +
T Consensus 215 ~~~l~~~i~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG---~~~a~e~~-g 290 (464)
T PRK06938 215 LHYLENLLDDPESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTG---KMFAFEHA-G 290 (464)
T ss_pred HHHHHHHHHhhccCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCc---HHHHHHhc-C
Confidence 455666664321 13344444222222354 3569999999999999999999999999885433 11122221 2
Q ss_pred hcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhC---Chhhhhhhhh
Q psy14428 373 EVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILS---DPKLKAQCDE 448 (583)
Q Consensus 373 ~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~---~~~~~~~~~~ 448 (583)
-.+.+++ ++|.++ .|+-+|.+++ . ++ ++.+........++.++++..++.+.++ ++.+..+.++
T Consensus 291 v~PDiv~---~gKglg-gG~PlsAv~~--~-----~~-~~~~~~~~~~~T~~gnpla~Aaa~a~L~~l~~~~l~~~~~~ 357 (464)
T PRK06938 291 IIPDVVV---LSKAIG-GSLPLAVVVY--R-----EW-LDTWQPGAHAGTFRGNQMAMAAGSATLRYIKEHRLAEHAAA 357 (464)
T ss_pred CCCCEEE---eecccc-CCCceEEEee--h-----hH-hhccCCCCCCCCCCcCHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 2234444 489998 7999999998 5 23 3433221122344556666666655543 4444444333
|
|
| >PRK15400 lysine decarboxylase CadA; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.2e-05 Score=87.74 Aligned_cols=172 Identities=13% Similarity=0.072 Sum_probs=112.1
Q ss_pred CCCCC-HHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeE
Q psy14428 204 NIGGD-AKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNV 282 (583)
Q Consensus 204 ~~~G~-~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~ 282 (583)
.+.|. .+-.+.+|+.++.. .-.++ |+|++.++..+ +..++.+||.|++..-+.-.....+.+.|+++
T Consensus 192 ~~~G~i~eAe~~AA~~fgAd-------~tyfv--vNGTS~~n~av---~~a~~~~Gd~VLvdRN~HKSv~haLilsga~P 259 (714)
T PRK15400 192 DHSGPHKEAEEYIARVFNAD-------RSYMV--TNGTSTANKIV---GMYSAPAGSTVLIDRNCHKSLTHLMMMSDVTP 259 (714)
T ss_pred CCChHHHHHHHHHHHHhCCC-------cEEEE--eCchHHHHHHH---HHHhcCCCCEEEeecccHHHHHHHHHHcCCeE
Confidence 34454 55555666666532 34566 99999998874 44566779999999999888888899999999
Q ss_pred EEEecccCCCC----CCC-----hhhHHHHHHcCCC--CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEecc
Q psy14428 283 GAYRYFDNKTN----GLD-----FAGMMEDIKAMPE--RSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMA 351 (583)
Q Consensus 283 ~~v~~~d~~~~----g~d-----~~~l~~~l~~~~~--~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~ 351 (583)
++++. +-+.+ +++ .+.+++++++... +++.+++.+| +=-|.+++.+++ ++.|..++ |++|||
T Consensus 260 VYl~P-~rn~~Gi~g~I~~~~~~~e~i~~~i~~~p~ak~p~~~vit~p-TYdG~~yd~~~I---~~~~~~~~--ilvDEA 332 (714)
T PRK15400 260 IYFRP-TRNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYNTDFI---KKTLDVKS--IHFDSA 332 (714)
T ss_pred EEecc-cccccCCccCCCccccCHHHHHHHHHhCccccCccEEEEECC-CCccEecCHHHH---HHHhCCCC--EEEEcc
Confidence 99865 22223 334 7888888876532 2225666555 335999987555 55555666 689999
Q ss_pred CCCC-CCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceE
Q psy14428 352 YLGL-TSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGT 396 (583)
Q Consensus 352 Y~~l-~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~ 396 (583)
|... .|.+...+..++....+..+.++++.|.-|++ +|+.-+.
T Consensus 333 wgah~~F~p~~~~~sam~~ga~~~~~i~vtQStHKtL--~alTQaS 376 (714)
T PRK15400 333 WVPYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLL--AAFSQAS 376 (714)
T ss_pred chhhhccCcccCCcChhhcCCCCCCceEEEEchhhcc--cchhHHh
Confidence 8754 34331111223322122235679999999997 5665553
|
|
| >PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.0001 Score=79.12 Aligned_cols=252 Identities=9% Similarity=0.026 Sum_probs=137.7
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
.+...+|+..|.+....|.- .+.+.+++.+.+++.....+. .. ..+....+|+.+..... -.-+++.+ +++|
T Consensus 38 dG~~ylD~~~g~~~~~lGh~--~p~i~~ai~~q~~~~~~~~~~-~~-~~~~~~~lae~L~~~~p--~~~~~v~f--~~SG 109 (422)
T PRK05630 38 DGSTVIDAMSSWWSAAHGHG--HPRLKAAAHKQIDTMSHVMFG-GL-THEPAIKLTRKLLNLTD--NGLDHVFY--SDSG 109 (422)
T ss_pred CCCEEEEcchhHHHhcCCCC--CHHHHHHHHHHHHhCCCcccC-Cc-CCHHHHHHHHHHHhhCC--CCcCEEEE--eCCc
Confidence 45677899888877666653 467777777666542111110 00 11223444444433211 11368999 9999
Q ss_pred hhHHHHHHHHHHHhC-----CCCCEEEEcCCCChhhHHHHhh-cCC-------------eEEEEecccCCCCCCChhhH-
Q psy14428 241 SGSLRVGTAFLERFY-----PGVKTVYFPTPTWNGHVRFCTD-SRL-------------NVGAYRYFDNKTNGLDFAGM- 300 (583)
Q Consensus 241 ~~al~l~~~~l~~~~-----~~gd~Vlv~~P~y~~~~~~~~~-~G~-------------~~~~v~~~d~~~~g~d~~~l- 300 (583)
++|.+.+..+.+... +...+|+...-+|......... .+- ....+|.. . ..+.+.+..
T Consensus 110 seA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~-~-~~~~~~~~~~ 187 (422)
T PRK05630 110 SVSVEVAIKMALQYSKGQGHPERTRLLTWRSGYHGDTFAAMSVCDPEGGMHSLWKGTLPEQIFAPAP-P-VRGSSPQEIS 187 (422)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhccCCCcccccccccccCCCCeEcCCC-c-ccCCChHHHH
Confidence 999998766555442 1135788888888764322211 110 12223321 0 011122111
Q ss_pred --HHHHHcC-CCCcEEEEeCC-CCCCCCC-CCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcC
Q psy14428 301 --MEDIKAM-PERSILFLQTS-SHNPTGV-DLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVG 375 (583)
Q Consensus 301 --~~~l~~~-~~~~~~i~i~~-p~NPTG~-~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~ 375 (583)
.+.+++. ..+..++++-. .+.-.|. ..+.+-+++|.++|++|++++|.||+.-.|...+ ....... .+-.+
T Consensus 188 ~~~~~~~~~~~~~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~tG~GrtG---~~~a~~~-~gv~P 263 (422)
T PRK05630 188 EYLRSLELLIDETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTG---ELFATLA-AGVTP 263 (422)
T ss_pred HHHHHHHHHHhhceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecceeCCCcCc---hhhHHHh-cCCCC
Confidence 1222211 23444454433 2555676 4577899999999999999999999997774433 1112211 12122
Q ss_pred cEEEEecCcccccccC-ccceEEEEEcCCchhHHHHHHHHHHH------HhccccCCChHHHHHHHHHh
Q psy14428 376 QLCLAQSFSKNMGLYG-ERVGTFSVLTPTSDETERIMSQLKIL------IRGFYSNPPIHGARIVTEIL 437 (583)
Q Consensus 376 ~vi~i~S~SK~~~l~G-lRiG~lv~~~p~~~~~~~li~~l~~~------~~~~~~~~s~~~q~~~~~~l 437 (583)
.++ +|+|.++ .| .-+|++++ + +++.+.+... .-...++.++++..++.+.+
T Consensus 264 Di~---t~gK~l~-gG~~p~~av~~--~-----~~i~~~~~~~~~~~~~~h~~T~~g~Pla~aaa~aaL 321 (422)
T PRK05630 264 DIM---CVGKALT-GGFMSFAATLC--T-----DKVAQLISTPNGGGALMHGPTFMANPLACAVAHASL 321 (422)
T ss_pred Cee---eeechhh-cCccccceeec--c-----HHHHHHHhccCCCCccccCCCCcCCHHHHHHHHHHH
Confidence 333 7899886 67 48899998 6 4777776531 11223455666655555444
|
|
| >PLN02880 tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00022 Score=77.88 Aligned_cols=260 Identities=10% Similarity=-0.001 Sum_probs=158.9
Q ss_pred hHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCC-----CCCeEEEecCCchhHHHHHHHHHHH-hCC-
Q psy14428 184 PSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFK-----DNRLAIVQGISGSGSLRVGTAFLER-FYP- 256 (583)
Q Consensus 184 ~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~-----~~~I~i~~t~G~~~al~l~~~~l~~-~~~- 256 (583)
..+.+.+...... ....|....+..++.+.+.+|+.+..|.+-. ...-++ |+||++|...+..+.+. ..+
T Consensus 97 ~~lad~l~~~~n~-~~~~~~~sp~~~~lE~~vi~wl~~l~g~p~~~~~~~~~gG~~--tsggs~anl~al~~AR~~~~~~ 173 (490)
T PLN02880 97 GFLGEMLSAGLNI-VGFSWITSPAATELEMIVLDWLAKLLNLPEQFLSTGNGGGVI--QGTASEAVLVVLLAARDRVLRK 173 (490)
T ss_pred HHHHHHHHHhhcc-CCcccccCcccHHHHHHHHHHHHHHhCCCchhhcCCCCceEE--cCccHHHHHHHHHHHHHHHHHH
Confidence 4455555544432 2344656667889999999999887765421 123567 89999987654323222 110
Q ss_pred ------CCCEEEEcCCCChhhHHHHhhcCCe---EEEEecccC-CCCCCChhhHHHHHHcC---CCCcEEEEeCCCCCCC
Q psy14428 257 ------GVKTVYFPTPTWNGHVRFCTDSRLN---VGAYRYFDN-KTNGLDFAGMMEDIKAM---PERSILFLQTSSHNPT 323 (583)
Q Consensus 257 ------~gd~Vlv~~P~y~~~~~~~~~~G~~---~~~v~~~d~-~~~g~d~~~l~~~l~~~---~~~~~~i~i~~p~NPT 323 (583)
+.-.|++.+-+.......+..+|+. ++.||. |. +++.+|++.|++.+++. ...+.+++-+-..-+|
T Consensus 174 ~g~~~~~~~vv~~S~~aH~Sv~Kaa~~lGlg~~~v~~Vp~-d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~ 252 (490)
T PLN02880 174 VGKNALEKLVVYASDQTHSALQKACQIAGIHPENCRLLKT-DSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSS 252 (490)
T ss_pred hcccccCCeEEEEcCCchHHHHHHHHHcCCCHHHEEEeec-CCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcC
Confidence 1124556776777778888889984 788888 54 34689999999999653 3345666666677788
Q ss_pred CCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHh-cCcEEEEecCcccccccCccceEEEEEcC
Q psy14428 324 GVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKE-VGQLCLAQSFSKNMGLYGERVGTFSVLTP 402 (583)
Q Consensus 324 G~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~-~~~vi~i~S~SK~~~l~GlRiG~lv~~~p 402 (583)
|.+-+ +++|.++|+++|+|+.+|-+|+.+.... +..+...+. ..---+..++-|.+. .-.-+|.+++ .
T Consensus 253 GaiDp---l~eI~~i~~~~~iwlHVDaA~gg~~~~~-----~~~~~~l~gie~aDSit~d~HKwl~-~P~~~g~llv--r 321 (490)
T PLN02880 253 TAVDP---LLELGKIAKSNGMWFHVDAAYAGSACIC-----PEYRHYIDGVEEADSFNMNAHKWFL-TNFDCSLLWV--K 321 (490)
T ss_pred cccCc---HHHHHHHHHHcCCEEEEehhhHHHHHhC-----HHHHHHhcCchhcCEEEECchhhcC-CCccEEEEEE--e
Confidence 87766 5666888999999999999998875421 112221111 111246678899885 7788899998 5
Q ss_pred CchhHHHHHHHHHHHHhcccc-----------------C---CChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHh
Q psy14428 403 TSDETERIMSQLKILIRGFYS-----------------N---PPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIR 461 (583)
Q Consensus 403 ~~~~~~~li~~l~~~~~~~~~-----------------~---~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r 461 (583)
+. ..+++.+..-...... . ...+.-++..+.+..+.+.+++++..+....+.+.++
T Consensus 322 ~~---~~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~~i~~~rr~~alklw~~l~~~G~~g~~~~i~~~~~lA~~~~~~l~ 397 (490)
T PLN02880 322 DR---NALIQSLSTNPEFLKNKASQANSVVDYKDWQIPLGRRFRSLKLWMVLRLYGVENLQSYIRNHIKLAKEFEQLVA 397 (490)
T ss_pred CH---HHHHHHHccCHHHhcCccccccCCCChhccCcCCCCcccHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 43 2444444321111000 0 0133344445556666677776655555555555554
|
|
| >PLN02590 probable tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00018 Score=78.83 Aligned_cols=260 Identities=11% Similarity=0.035 Sum_probs=163.2
Q ss_pred hHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCC-----CCCeEEEecCCchhHHHHHHHHHHHh-C--
Q psy14428 184 PSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFK-----DNRLAIVQGISGSGSLRVGTAFLERF-Y-- 255 (583)
Q Consensus 184 ~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~-----~~~I~i~~t~G~~~al~l~~~~l~~~-~-- 255 (583)
..+-+.+...... ....|....+..++.+.+.+|+.+..|.+-. ...=++ |+|+++|...+..+.+.. .
T Consensus 145 ~~lgd~l~sa~n~-~~~~~~~sPa~t~lE~~vi~wl~~l~glp~~~~~~~~~gG~~--~sGgSeAnl~al~aAR~~~~~~ 221 (539)
T PLN02590 145 GFLGEMLNAGLSV-VGFTWLTSPAATELEIIVLDWLAKLLQLPDHFLSTGNGGGVI--QGTGCEAVLVVVLAARDRILKK 221 (539)
T ss_pred HHHHHHHHHhccc-ccCCcccCchhHHHHHHHHHHHHHHhCCCcccccCCCCceEE--cCchHHHHHHHHHHHHHHHHhh
Confidence 4455555554432 2456777788899999999999988776521 123566 899998876542222221 0
Q ss_pred -----CCCCEEEEcCCCChhhHHHHhhcCC---eEEEEecccC-CCCCCChhhHHHHHHcC---CCCcEEEEeCCCCCCC
Q psy14428 256 -----PGVKTVYFPTPTWNGHVRFCTDSRL---NVGAYRYFDN-KTNGLDFAGMMEDIKAM---PERSILFLQTSSHNPT 323 (583)
Q Consensus 256 -----~~gd~Vlv~~P~y~~~~~~~~~~G~---~~~~v~~~d~-~~~g~d~~~l~~~l~~~---~~~~~~i~i~~p~NPT 323 (583)
.+.-.|++.+-+.......+..+|+ +++.||+ |. +++.+|++.|+++|++. ...+.+++-+-..-+|
T Consensus 222 ~g~~~~~~~vvy~S~~aH~Sv~KAa~ilGlg~~~vr~Vp~-d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~t 300 (539)
T PLN02590 222 VGKTLLPQLVVYGSDQTHSSFRKACLIGGIHEENIRLLKT-DSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSS 300 (539)
T ss_pred hcccCCCCEEEEecCCchHHHHHHHHHcCCCcccEEEEeC-CCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCC
Confidence 1122555667676778888898888 5888998 54 34789999999999653 2344555555555667
Q ss_pred CCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCc-EEEEecCcccccccCccceEEEEEcC
Q psy14428 324 GVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQ-LCLAQSFSKNMGLYGERVGTFSVLTP 402 (583)
Q Consensus 324 G~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~-vi~i~S~SK~~~l~GlRiG~lv~~~p 402 (583)
|. -|.+.+|.++|+++++|+-+|-+|+.+..-. +..+.+.+.-++ -=+..++-|.+. ...-+|.+++ .
T Consensus 301 Ga---iDpl~~Ia~i~~~~g~WlHVDaA~GG~al~~-----~~~r~~~~Gie~ADSit~D~HK~l~-~p~~cg~llv--r 369 (539)
T PLN02590 301 AA---VDPLVPLGNIAKKYGIWLHVDAAYAGNACIC-----PEYRKFIDGIENADSFNMNAHKWLF-ANQTCSPLWV--K 369 (539)
T ss_pred cc---cCCHHHHHHHHHHhCCeEEEecchhhhhhcC-----hhhHHHhcCCccCCEEEECchhhcC-cCcCEEEEEe--c
Confidence 64 4567888999999999999999999876432 122222221111 123446789775 7778898888 6
Q ss_pred CchhHHHHHHHHHHHHhcc--------------------ccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHh
Q psy14428 403 TSDETERIMSQLKILIRGF--------------------YSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIR 461 (583)
Q Consensus 403 ~~~~~~~li~~l~~~~~~~--------------------~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r 461 (583)
++. .+++.+....... .-....+--+++.+.+..+.+.+++++..+..+.+.+.++
T Consensus 370 ~~~---~l~~a~~~~~~YL~~~~~~~~~~~d~~d~~i~lsRr~raLklW~~lr~~G~~G~~~~i~~~~~lA~~~~~~l~ 445 (539)
T PLN02590 370 DRY---SLIDALKTNPEYLEFKVSKKDTVVNYKDWQISLSRRFRSLKLWMVLRLYGSENLRNFIRDHVNLAKHFEDYVA 445 (539)
T ss_pred CHH---HHHHHhhcCHHHhCCcccccccCCCccccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 532 4544443211111 0011344455666666667777777776666666666654
|
|
| >PRK06917 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00027 Score=76.42 Aligned_cols=255 Identities=12% Similarity=0.052 Sum_probs=140.7
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
.+...+|+..|.+....|.- .|.+.+++.+.+... .+.+.... ..+.+..+|+.+.... +-..+++.+ +++|
T Consensus 29 dG~~ylD~~~g~~~~~lGh~--hp~v~~Ai~~ql~~~-~~~~~~~~-~~~~~~~lae~L~~~~--p~~~~~v~f--~~sG 100 (447)
T PRK06917 29 NGNKYFDGSSGAVTAGIGHG--VKEIADAIKEQAEEV-SFVYRSQF-TSEPAEKLAKKLSDLS--PGDLNWSFF--VNSG 100 (447)
T ss_pred CCCEEEECchhHHhccCCCC--CHHHHHHHHHHHhhC-cCcccccc-CCHHHHHHHHHHHHhC--CCCCCEEEE--eCCh
Confidence 45567888877776556643 467777777666542 11111101 1234445555554322 111257888 9999
Q ss_pred hhHHHHHHHHHHHh---C--CCCCEEEEcCCCChhhHHHHhh-cCC------------eEEEEecccCCC--CCC-----
Q psy14428 241 SGSLRVGTAFLERF---Y--PGVKTVYFPTPTWNGHVRFCTD-SRL------------NVGAYRYFDNKT--NGL----- 295 (583)
Q Consensus 241 ~~al~l~~~~l~~~---~--~~gd~Vlv~~P~y~~~~~~~~~-~G~------------~~~~v~~~d~~~--~g~----- 295 (583)
++|.+.+..+.+.. . ....+|+...-+|......... .|. .+..+|...... .+-
T Consensus 101 sEAve~AlklAr~~~~~rg~t~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 180 (447)
T PRK06917 101 SEANETAMKIAIQHFQERGIQGKHKILSRWMSYHGITMGALSMSGHPLRRQRFVSLLEDYPTISAPYCYRCPVQKVYPTC 180 (447)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCCCeEeCCCcccccccCCChHHH
Confidence 99999875554332 1 2236788888887765432221 111 111122100000 000
Q ss_pred ---ChhhHHHHHHcCC-CCcEEEEeC-CCCCCCCC-CCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHH
Q psy14428 296 ---DFAGMMEDIKAMP-ERSILFLQT-SSHNPTGV-DLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRY 369 (583)
Q Consensus 296 ---d~~~l~~~l~~~~-~~~~~i~i~-~p~NPTG~-~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~ 369 (583)
+.+.+++.+++.. +...++++- -..|--|. ..+++-+++|.++|+++|+++|.||+...|.--+ .......
T Consensus 181 ~~~~~~~le~~i~~~~~~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~tGfGRtG---~~~a~~~ 257 (447)
T PRK06917 181 QLACATELETAIERIGAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLGRTG---AMFAMEH 257 (447)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEEeccccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhhCcCccc---chhhHHh
Confidence 1345556665432 234444432 22233333 5679999999999999999999999998874332 1111222
Q ss_pred HHHhcCcEEEEecCcccccccCc-cceEEEEEcCCchhHHHHHHHHHHHH----hccccCCChHHHHHHHHHhC
Q psy14428 370 FAKEVGQLCLAQSFSKNMGLYGE-RVGTFSVLTPTSDETERIMSQLKILI----RGFYSNPPIHGARIVTEILS 438 (583)
Q Consensus 370 ~~~~~~~vi~i~S~SK~~~l~Gl-RiG~lv~~~p~~~~~~~li~~l~~~~----~~~~~~~s~~~q~~~~~~l~ 438 (583)
+ +-.+.+ -+|+|.++ .|+ -+|.+++ . +++++.+.... ....++.++++..++.+.++
T Consensus 258 ~-gv~PDi---~~~gK~l~-~G~~Pi~a~~~--~-----~~i~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~ 319 (447)
T PRK06917 258 W-GVEPDI---MTLGKGLG-AGYTPIAATVV--S-----DRVMEPILRGSRSIMSGHTLSANPLSAATALAVLE 319 (447)
T ss_pred c-CCCCCE---EEeeehhc-cCCcceEEEEE--c-----HHHHHHHhccCcccccccCCCCCHHHHHHHHHHHH
Confidence 1 222333 46699998 785 8999999 6 57777765321 11244566777666665554
|
|
| >PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=8.3e-05 Score=80.09 Aligned_cols=215 Identities=12% Similarity=0.104 Sum_probs=124.1
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCC-CCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCC
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYA-NIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGIS 239 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~-~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G 239 (583)
.+...||+..|.+....|.- .|.+.+++.+.++... .+. +.....+|-+.+++... ..+++.+ +++
T Consensus 46 dG~~ylD~~~g~~~~~lGh~--~p~v~~Ai~~q~~~~~--~~~~~~~~~~~la~~l~~~~p-------~~~~v~f--~~s 112 (431)
T PRK06209 46 DGNEYIEYGMGLRAVGLGHA--YPPVVEAVREALQDGC--NFTRPSAIELDAAESFLELID-------GADMVKF--CKN 112 (431)
T ss_pred CCCEEEEccccccchhcCCC--CHHHHHHHHHHHHhCc--CCCCCCHHHHHHHHHHHHhCC-------ccceEEE--ecC
Confidence 45667888888776666653 3677877777765522 222 22111234444444331 1258888 999
Q ss_pred chhHHHHHHHHHHHhCCCCCEEEEc-CCCChhhHHHH-----hhcCCe----EEEEecccCCCCCCChhhHHHHHHcCCC
Q psy14428 240 GSGSLRVGTAFLERFYPGVKTVYFP-TPTWNGHVRFC-----TDSRLN----VGAYRYFDNKTNGLDFAGMMEDIKAMPE 309 (583)
Q Consensus 240 ~~~al~l~~~~l~~~~~~gd~Vlv~-~P~y~~~~~~~-----~~~G~~----~~~v~~~d~~~~g~d~~~l~~~l~~~~~ 309 (583)
|++|.+.+..+.+.... ...|+.. .-+|....... ...|.. ...+.+ . .+ |++.+++.+++...
T Consensus 113 GseA~e~AlklAr~~tg-r~~i~~~~~~~~h~~~~~~~g~~~~~~~~~~~~~~~~~~~-~-~~---d~~~l~~~l~~~~~ 186 (431)
T PRK06209 113 GSDATSAAVRLARAYTG-RDLVARCADHPFFSTDDWFIGTTPMSAGIPASVSALTVTF-R-YN---DIASLEALFEDHPG 186 (431)
T ss_pred HHHHHHHHHHHHHHHhC-CCeEEEeccCccccccccccccCCCCCCCChhHhcccccc-C-CC---CHHHHHHHHHhCCC
Confidence 99999988766555533 2445443 12221110000 001110 001111 1 11 68888888864333
Q ss_pred CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccc
Q psy14428 310 RSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGL 389 (583)
Q Consensus 310 ~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l 389 (583)
+..++++ -|- .|...+.+.+++|.++|++|++++|.||+...+.... .......+..+. +.++||.+|
T Consensus 187 ~~aavi~-Epv--~g~~~~~~~l~~l~~lc~~~g~lLI~DEv~tG~~~~~-----~g~~~~~gv~PD---i~t~gK~lg- 254 (431)
T PRK06209 187 RIACVIL-EPA--TADEPQDGFLHEVRRLCHENGALFILDEMITGFRWHM-----RGAQKLYGIVPD---LSCFGKALG- 254 (431)
T ss_pred CEEEEEE-ccc--cCCCCCHHHHHHHHHHHHHcCCEEEEEcccccCCcCc-----chhhHHhCCCcc---eeeehhhhc-
Confidence 3444443 442 3557788999999999999999999999987764321 112211111122 467899998
Q ss_pred cCccceEEEEEcCCchhHHHHHHH
Q psy14428 390 YGERVGTFSVLTPTSDETERIMSQ 413 (583)
Q Consensus 390 ~GlRiG~lv~~~p~~~~~~~li~~ 413 (583)
.|+-+|++++ + +++++.
T Consensus 255 gG~p~~av~~--~-----~~i~~~ 271 (431)
T PRK06209 255 NGFAVSALAG--K-----REYMEL 271 (431)
T ss_pred CCcccEEEEE--H-----HHHHhh
Confidence 7899999999 6 467765
|
|
| >PLN03226 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00023 Score=77.37 Aligned_cols=208 Identities=14% Similarity=0.056 Sum_probs=109.2
Q ss_pred CCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCC------CCCCCCHHHHHHHHHHHhCCCCCCCCCCCe-EEE
Q psy14428 163 PKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEY------ANIGGDAKFCKLAAQLAYGEDFPAFKDNRL-AIV 235 (583)
Q Consensus 163 ~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y------~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I-~i~ 235 (583)
...|+|=..+.. ..+.+.+++...+.+....+| +...-..++.+...+...+.++ ...+.+ +-+
T Consensus 34 ~~~l~liasen~-------~s~~v~~a~~s~~~~ky~~G~~g~r~~~G~~~~d~lE~~~~~~~~~~f~--~~~~~~~~nv 104 (475)
T PLN03226 34 WKGLELIASENF-------TSRAVMEALGSCLTNKYSEGLPGARYYGGNEYIDQIETLCQKRALEAFR--LDPEKWGVNV 104 (475)
T ss_pred HcCeeEecCCcc-------CCHHHHHHHhhHHhccccCCCCCCcCcCCChhHHHHHHHHHHHHHHHhC--CCcceeEEec
Confidence 355666544432 457888888777733112222 2222233443311112222221 122333 223
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCCEEEEcCC-C--ChhhHHHHhh---cCCe----EEEEecccCCCCCCChhhHHHHHH
Q psy14428 236 QGISGSGSLRVGTAFLERFYPGVKTVYFPTP-T--WNGHVRFCTD---SRLN----VGAYRYFDNKTNGLDFAGMMEDIK 305 (583)
Q Consensus 236 ~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P-~--y~~~~~~~~~---~G~~----~~~v~~~d~~~~g~d~~~l~~~l~ 305 (583)
+...|+.|... ++..+++|||+|+..+. . +..+...... .+.. ++++.. +++++.+|++.+++.+.
T Consensus 105 ~~~SG~~AN~a---v~~aL~~pgD~Il~~d~~~gGhl~H~~~~~g~~~s~~~~~~~~~~y~~-~~~~g~iD~d~Le~~l~ 180 (475)
T PLN03226 105 QPLSGSPANFA---VYTALLQPHDRIMGLDLPHGGHLSHGYQTDGKKISATSIYFESMPYRL-DESTGLIDYDKLEKKAM 180 (475)
T ss_pred CcCchHHHHHH---HHHHhCCCCCEEEECCCCcCcchhhhhhhcccccccceEEEEeeeeee-cCCCCCcCHHHHHHHHh
Confidence 33445556554 34556778999998553 2 2322222111 1111 224444 44567899999999885
Q ss_pred cCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcc
Q psy14428 306 AMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSK 385 (583)
Q Consensus 306 ~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK 385 (583)
+. +++++++ ..++ +|...+.+ +|.++|+++|++++.|++..-=..... ....++ + .--+++.|++|
T Consensus 181 ~~--~pklIv~-~~S~-~s~~~D~a---~i~~ia~~~ga~LlvD~AH~~Gli~~~-~~~~p~----~--~~Div~~t~hK 246 (475)
T PLN03226 181 LF--RPKLIIA-GASA-YPRDWDYA---RMRKIADKVGALLMCDMAHISGLVAAQ-EAASPF----E--YCDVVTTTTHK 246 (475)
T ss_pred hc--CCeEEEE-ecCc-CCCccCHH---HHHHHHHHcCCEEEEEchhhhCcccCC-CCCCCC----C--CCeEEEecCcc
Confidence 43 3455544 2333 56666544 667889999999999998653222110 000111 1 23478999999
Q ss_pred cccccCccceEEEE
Q psy14428 386 NMGLYGERVGTFSV 399 (583)
Q Consensus 386 ~~~l~GlRiG~lv~ 399 (583)
++ .|-|-|++++
T Consensus 247 ~L--~GP~Gg~I~~ 258 (475)
T PLN03226 247 SL--RGPRGGMIFF 258 (475)
T ss_pred cc--cCCCceEEEE
Confidence 98 3455588887
|
|
| >PLN02271 serine hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00025 Score=76.74 Aligned_cols=206 Identities=12% Similarity=0.028 Sum_probs=125.0
Q ss_pred CCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCC------CCCCCHHHHHHHHHHHhCCCCCCCCC--CCeEE
Q psy14428 163 PKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYA------NIGGDAKFCKLAAQLAYGEDFPAFKD--NRLAI 234 (583)
Q Consensus 163 ~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~------~~~G~~~Lr~aia~~~~~~~g~~~~~--~~I~i 234 (583)
...|+|=..+.- ..+.+.+++...+.+....+|+ ......++.....+...+.++.+... -||-.
T Consensus 148 ~~~l~LIASEN~-------~S~av~~algS~ltnkYaEG~pG~Ryy~G~~~iD~iE~la~era~~lF~~~~~~~gaNVQp 220 (586)
T PLN02271 148 FKGIELIASENF-------VCRAVMEALGSHLTNKYSEGMPGARYYTGNQYIDQIERLCCERALAAFGLDSEKWGVNVQP 220 (586)
T ss_pred hcCeeecccccc-------CCHHHHHHhcCcccccCCCCCCCCcCCCCChhHHHHHHHHHHHHHHHhCCcccccccceee
Confidence 455666544432 4578888877666553233333 22333455444444444444433211 24444
Q ss_pred EecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHH---------hhcCC--eEEEEecccCCCCCCChhhHHHH
Q psy14428 235 VQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFC---------TDSRL--NVGAYRYFDNKTNGLDFAGMMED 303 (583)
Q Consensus 235 ~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~---------~~~G~--~~~~v~~~d~~~~g~d~~~l~~~ 303 (583)
-+ |+.|...+ +..++.|||+|+..+..+.++.... ...|. +++++++ |++++.+|.+.+++.
T Consensus 221 --~S-Gs~AN~aV---~~ALl~PGD~IL~ldl~~GGHlshg~~~~~g~~vs~sG~~~~~vpY~~-d~~~g~IDyd~lek~ 293 (586)
T PLN02271 221 --YS-CTSANFAV---YTGLLLPGDRIMGLDSPSGGHMSHGYYTPGGKKVSGASIFFESLPYKV-NPQTGYIDYDKLEEK 293 (586)
T ss_pred --cc-HHHHHHHH---HHHhcCCCCEEEEecCCCCCchhcccccccccccccccceEEEEEccc-ccccCccCHHHHHHH
Confidence 44 44455553 4455778999999988888775532 23454 4445556 556678999999885
Q ss_pred HHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCC-CCCCCCCCchHHHHHHHHhcCcEEEEec
Q psy14428 304 IKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLG-LTSGDFDKDAFSLRYFAKEVGQLCLAQS 382 (583)
Q Consensus 304 l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~-l~~~~~~~~~~~~~~~~~~~~~vi~i~S 382 (583)
+. ..+++++++..-.|| ..++. +++.++|.+++++++.|.+..- +.-.+. -+.++ ..--++..|
T Consensus 294 a~--~~rPKLII~g~Sayp--r~~D~---~~i~eIAdevGA~LmvD~AH~aGLIa~g~--~~sP~------~~aDvvt~T 358 (586)
T PLN02271 294 AL--DFRPKILICGGSSYP--REWDY---ARFRQIADKCGAVLMCDMAHISGLVAAKE--CVNPF------DYCDIVTST 358 (586)
T ss_pred hh--hcCCeEEEECchhcc--CcCCH---HHHHHHHHHcCCEEEEECcccccccccCc--CCCCC------cCCcEEEeC
Confidence 43 567888888666777 44554 4557778899999999999753 332221 00111 123478899
Q ss_pred CcccccccCccceEEEE
Q psy14428 383 FSKNMGLYGERVGTFSV 399 (583)
Q Consensus 383 ~SK~~~l~GlRiG~lv~ 399 (583)
..|++ .|=|-|.++.
T Consensus 359 THKtL--rGPrGG~I~~ 373 (586)
T PLN02271 359 THKSL--RGPRGGIIFY 373 (586)
T ss_pred CcccC--CCCCceEEEe
Confidence 99997 6778788888
|
|
| >PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00046 Score=74.85 Aligned_cols=254 Identities=11% Similarity=0.032 Sum_probs=138.0
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCC-CCeEEEecCC
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKD-NRLAIVQGIS 239 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~-~~I~i~~t~G 239 (583)
.+...+|+..|.+....|.- .|.+.+++.+.+........ ..-..+.+..+|+.+.......... ..++. +++
T Consensus 56 dG~~ylD~~~g~~~~~lGH~--~p~v~~Ai~~q~~~~~~~~~--~~~~~~~~~~lAe~L~~~~p~~~~~~~~~f~--~~S 129 (459)
T PRK06931 56 EGNQYLDCLAGAGTLALGHN--HPDVLQSIQDVLTSGLPLHT--LDLTTPLKDAFSEYLLSLLPGQGKEYCLQFT--GPS 129 (459)
T ss_pred CCCEEEEcccchhhccCCCC--CHHHHHHHHHHHhhhccccc--cccCCHHHHHHHHHHHHhCCCccccceEEEe--CCC
Confidence 45567888888776666643 36777777766643211111 1112345555666664432111001 12344 688
Q ss_pred chhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhc-C------------CeEEEEecccCCC--CC----CChhhH
Q psy14428 240 GSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDS-R------------LNVGAYRYFDNKT--NG----LDFAGM 300 (583)
Q Consensus 240 ~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~-G------------~~~~~v~~~d~~~--~g----~d~~~l 300 (583)
|++|.+.+..+.+.... .+.|+...-+|.+........ | ..+..+|..+... ++ -+.+.+
T Consensus 130 GsEAve~AlklAr~~tg-r~~Ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (459)
T PRK06931 130 GADAVEAAIKLAKTYTG-RSNVISFSGGYHGMTHGALAVTGNLSPKNAVNGLMPGVQFMPYPHEYRCPLGIGGEAGVKAL 208 (459)
T ss_pred cHHHHHHHHHHHHHhcC-CCeEEEECCCcCCccHHHHhhcCCcccccCCCCCCCCcEEeCCCccccccccCCchhHHHHH
Confidence 99999988666665543 567888888887664433321 1 1123333311100 00 012222
Q ss_pred ----HHHHHc---CCCCcEEEEe-CCCCCCCCC-CCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHH
Q psy14428 301 ----MEDIKA---MPERSILFLQ-TSSHNPTGV-DLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFA 371 (583)
Q Consensus 301 ----~~~l~~---~~~~~~~i~i-~~p~NPTG~-~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~ 371 (583)
++.++. ..++..++++ |-..+ .|. ..+++-+++|.++|+++|+++|.||+...|.--+ .......+
T Consensus 209 ~~~~~~~~~~~~~~~~~iAAvI~EPiqg~-gG~~~~~~~yl~~lr~lc~~~g~LlI~DEV~tGfGRtG---~~~a~~~~- 283 (459)
T PRK06931 209 TYYFENFIEDVESGVRKPAAVILEAIQGE-GGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFARTG---KMFAFEHA- 283 (459)
T ss_pred HHHHHHHHHhhhcCCCceEEEEEccccCC-CCCcCCCHHHHHHHHHHHHHcCCEEEEecchhcCCcCc---hHHHhhhc-
Confidence 222221 1223444444 33333 354 4678999999999999999999999998885333 12222221
Q ss_pred HhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhC
Q psy14428 372 KEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILS 438 (583)
Q Consensus 372 ~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~ 438 (583)
+-.+.++ +++|.++ .|+-+|.+++ . ++ ++.+........++.++++..++.+.|+
T Consensus 284 gv~PDiv---t~gK~l~-gG~Pi~av~~--~-----~~-~~~~~~~~~~~T~~gnpla~aaala~L~ 338 (459)
T PRK06931 284 GIEPDII---VMSKAVG-GGLPLAVLGI--K-----KE-FDAWQPGGHTGTFRGNQLAMATGLTTLK 338 (459)
T ss_pred CCCCCEE---Eeccccc-CCcceeeeee--H-----HH-HhhccCCCCCCCCCCCHHHHHHHHHHHH
Confidence 2223344 4599998 7999998777 4 23 3444322222344567777666665553
|
|
| >COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00022 Score=73.66 Aligned_cols=217 Identities=18% Similarity=0.069 Sum_probs=138.7
Q ss_pred ccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHH-HHHHHHhCCCCCCCCCCCeEEEecCCchhH
Q psy14428 165 KMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCK-LAAQLAYGEDFPAFKDNRLAIVQGISGSGS 243 (583)
Q Consensus 165 ~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~-aia~~~~~~~g~~~~~~~I~i~~t~G~~~a 243 (583)
+||.+.-......|.....+...+++..+.+....+.|.-..|...-|- .+++.+.. . ...+.+++ ++..+.|
T Consensus 22 viN~~G~v~~t~lG~s~~~~e~iea~~~~~~~~v~Le~~l~~g~~~~R~~~~~~~~~~---~-~~aea~~i--vnnn~aA 95 (395)
T COG1921 22 VINAIGTVLMTNLGRSLYSPEAIEAMKEAMRAPVELETDLKTGKRGARLTELAELLCG---L-TGAEAAAI--VNNNAAA 95 (395)
T ss_pred hhhhhhhheeccCCCccCCHHHHHHHHHHhcccceeeeecccchhhHHHHHHHHHHhc---c-cchhheee--ECCcHHH
Confidence 4444443344445555566788888888887654456655445433332 33333322 1 23577888 7888888
Q ss_pred HHHHHHHHHHhCCCCCEEE------EcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEE-e
Q psy14428 244 LRVGTAFLERFYPGVKTVY------FPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFL-Q 316 (583)
Q Consensus 244 l~l~~~~l~~~~~~gd~Vl------v~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~-i 316 (583)
+.++ +..+.. +.+|+ |+ +.-+....+++..|++++.+-.. . .-...+++.++ .+++.+++ +
T Consensus 96 Vll~---~~al~~-~~EvVis~g~lV~-gg~~~v~d~~~~aG~~l~EvG~t-n---~t~~~d~~~AI---ne~ta~llkV 163 (395)
T COG1921 96 VLLT---LNALAE-GKEVVVSRGELVE-GGAFRVPDIIRLAGAKLVEVGTT-N---RTHLKDYELAI---NENTALLLKV 163 (395)
T ss_pred HHHH---Hhhhcc-CCeEEEEcccccc-CCCCChhHHHHHcCCEEEEeccc-C---cCCHHHHHHHh---ccCCeeEEEE
Confidence 8774 455555 43443 44 67778899999999999988652 2 23677787877 45555444 3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceE
Q psy14428 317 TSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGT 396 (583)
Q Consensus 317 ~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~ 396 (583)
-++|-+--..++ .++++++|++++++++.|.+-..+.... +.++.+... +--+++.|=-|.++ |-|-|.
T Consensus 164 ~s~~~~f~~~l~---~~~l~~ia~~~~lpvivD~aSg~~v~~e-----~~l~~~la~-GaDLV~~SgdKllg--GPqaGi 232 (395)
T COG1921 164 HSSNYGFTGMLS---EEELVEIAHEKGLPVIVDLASGALVDKE-----PDLREALAL-GADLVSFSGDKLLG--GPQAGI 232 (395)
T ss_pred eecccccccccc---HHHHHHHHHHcCCCEEEecCCccccccc-----cchhHHHhc-CCCEEEEecchhcC--CCccce
Confidence 344433333444 4456888999999999999987765421 123333332 44577788899885 889999
Q ss_pred EEEEcCCchhHHHHHHHHHHH
Q psy14428 397 FSVLTPTSDETERIMSQLKIL 417 (583)
Q Consensus 397 lv~~~p~~~~~~~li~~l~~~ 417 (583)
+++ . +++|+++++.
T Consensus 233 i~G--k-----KelI~~lq~~ 246 (395)
T COG1921 233 IVG--K-----KELIEKLQSH 246 (395)
T ss_pred Eec--h-----HHHHHHHHhh
Confidence 999 6 6899988875
|
|
| >PRK07480 putative aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00037 Score=75.56 Aligned_cols=255 Identities=13% Similarity=0.101 Sum_probs=140.3
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCC-CCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCC
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANI-GGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGIS 239 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~-~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G 239 (583)
.+...+|+..|.+....|.- .|.+.+++.+.++.. .+ +... ....+.+..+|+.+..... -.-+++.. +++
T Consensus 48 dG~~ylD~~~g~~~~~lGh~--~p~v~~Ai~~q~~~~-~~-~~~~~~~~~~~~~~lae~L~~~~p--~~~~~v~f--~~S 119 (456)
T PRK07480 48 EGNKILDGMAGLWCVNVGYG--RKELADAAARQMREL-PY-YNTFFKTTHPPAIELAAKLAEVAP--PGFNHVFF--TNS 119 (456)
T ss_pred CCCEEEEccchHHHhcCCCC--CHHHHHHHHHHHHhc-CC-cccccccCCHHHHHHHHHHHHhCC--CCcCEEEE--eCC
Confidence 45567888877766555643 467777776666541 11 1111 1223444555555543321 12358899 999
Q ss_pred chhHHHHHHHHHHHhC-----CCCCEEEEcCCCChhhHHHH-hhcCC------------eEEEEecccCC--CCCCC---
Q psy14428 240 GSGSLRVGTAFLERFY-----PGVKTVYFPTPTWNGHVRFC-TDSRL------------NVGAYRYFDNK--TNGLD--- 296 (583)
Q Consensus 240 ~~~al~l~~~~l~~~~-----~~gd~Vlv~~P~y~~~~~~~-~~~G~------------~~~~v~~~d~~--~~g~d--- 296 (583)
|++|.+.+..+.+... ....+|+...-+|....... ...|. .+..++..... ..+.+
T Consensus 120 GseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~tl~a~s~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 199 (456)
T PRK07480 120 GSEANDTVLRMVRHYWALKGKPQKKVIISRKNGYHGSTVAGASLGGMKYMHEQGDLPIPGIVHIDQPYWFGEGGDMTPEE 199 (456)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhhccCChhhhcccCCCCCCCeecCCCcccccccCCChHH
Confidence 9999998766655541 21346777777776643211 11111 01112210000 00011
Q ss_pred -----hhhHHHHHHcC-CCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHH
Q psy14428 297 -----FAGMMEDIKAM-PERSILFLQTSSHNPTGVD-LSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRY 369 (583)
Q Consensus 297 -----~~~l~~~l~~~-~~~~~~i~i~~p~NPTG~~-~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~ 369 (583)
.+.+++.+.+. ..+..++++-.-+.--|.. .+.+-+++|.++|++||+++|.||+...|.--+ .......
T Consensus 200 ~~~~~~~~l~~~~~~~~~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG---~~~a~~~ 276 (456)
T PRK07480 200 FGLAAARQLEAKILELGADNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGFGRTG---EWFGSQH 276 (456)
T ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCc---chhhhhh
Confidence 24444444332 2344555554334434654 567789999999999999999999998884333 1112222
Q ss_pred HHHhcCcEEEEecCcccccccCc-cceEEEEEcCCchhHHHHHHHHHH----HHhccccCCChHHHHHHHHHhC
Q psy14428 370 FAKEVGQLCLAQSFSKNMGLYGE-RVGTFSVLTPTSDETERIMSQLKI----LIRGFYSNPPIHGARIVTEILS 438 (583)
Q Consensus 370 ~~~~~~~vi~i~S~SK~~~l~Gl-RiG~lv~~~p~~~~~~~li~~l~~----~~~~~~~~~s~~~q~~~~~~l~ 438 (583)
+ +-.+.+ -+|+|.++ .|+ -+|.+++ . +++++.+.. ......++.++++..++.+.|+
T Consensus 277 ~-gv~PDi---v~~gK~l~-gG~~Pi~av~~--~-----~~i~~~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~ 338 (456)
T PRK07480 277 F-GIKPDL---MTIAKGLT-SGYIPMGAVGV--G-----DRVAEVLIEEGGEFNHGFTYSGHPVAAAVALANLR 338 (456)
T ss_pred c-CCCCCe---eeeehhhc-cCCccceEEEE--c-----HHHHHHHhcCCCCcccCCCCCcCHHHHHHHHHHHH
Confidence 1 212233 46699998 784 8999999 5 477777631 1122345566777776666553
|
|
| >PRK15399 lysine decarboxylase LdcC; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00014 Score=81.39 Aligned_cols=174 Identities=13% Similarity=0.010 Sum_probs=111.7
Q ss_pred CCCCC-HHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeE
Q psy14428 204 NIGGD-AKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNV 282 (583)
Q Consensus 204 ~~~G~-~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~ 282 (583)
.+.|. .+-.+.+|+.++.. .-.++ ++|++.++..+ +..++.+||.|++..-+.-.....+.+.|+++
T Consensus 192 ~~~G~i~eAe~~aA~~fgAd-------~tyfv--vNGTS~~n~av---~~a~~~~Gd~VLvdRN~HKSv~~aLilsga~P 259 (713)
T PRK15399 192 DHTGPHLEAEEYIARTFGAE-------QSYIV--TNGTSTSNKIV---GMYAAPAGSTLLIDRNCHKSLAHLLMMSDVVP 259 (713)
T ss_pred CCChHHHHHHHHHHHHhCCC-------cEEEE--eCChHHHHHHH---HHHhcCCCCEEEeecccHHHHHHHHHHcCCee
Confidence 34443 55555666666532 34566 99999998874 44566779999999999888888899999999
Q ss_pred EEEecccCCCC----CCCh-----hhHHHHHHcCCC--CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEE-EEec
Q psy14428 283 GAYRYFDNKTN----GLDF-----AGMMEDIKAMPE--RSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYP-FFDM 350 (583)
Q Consensus 283 ~~v~~~d~~~~----g~d~-----~~l~~~l~~~~~--~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~i-I~De 350 (583)
++++. .-+.+ +++. +.+++++++.+. +++.+++.+| +=-|.+++.+++.++ | ++.+ ++||
T Consensus 260 VYl~P-~~n~~Gi~g~I~~~~~~~e~I~~~i~~~p~~~~p~~vvit~p-TYdGi~yd~~~I~~~---~---g~~~ilvDE 331 (713)
T PRK15399 260 IWLKP-TRNALGILGGIPRREFTRDSIEEKVAATTQAQWPVHAVITNS-TYDGLLYNTDWIKQT---L---DVPSIHFDS 331 (713)
T ss_pred EEecc-cccccCCcCCCChhhccHHHHHHHHHhCCCcCCceEEEEECC-CCCceeeCHHHHHHH---h---CCCEEEEec
Confidence 99864 22223 3445 888888876532 2256677666 445999987766554 4 4545 6999
Q ss_pred cCCCC-CCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEE
Q psy14428 351 AYLGL-TSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSV 399 (583)
Q Consensus 351 ~Y~~l-~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~ 399 (583)
||... .|.+...+..++........-++++.|.-|++ +|+.=+.++-
T Consensus 332 Ahgah~~F~p~~~~~sam~~~~~aD~~i~~tQStHKtL--~alTQaS~iH 379 (713)
T PRK15399 332 AWVPYTHFHPIYQGKSGMSGERVPGKVIFETQSTHKML--AAFSQASLIH 379 (713)
T ss_pred cchhhhhcCcccCCcChhhCCCCCCeeeeeeeehhccc--cccchheeee
Confidence 98753 34321111222221101223457799999997 6777665443
|
|
| >KOG1401|consensus | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.0005 Score=70.40 Aligned_cols=264 Identities=12% Similarity=0.097 Sum_probs=154.8
Q ss_pred CCCccccCCccccCCCCCCCCChHHHHHHHHHhcc-CC-CCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCC
Q psy14428 162 HPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEK-NL-DHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGIS 239 (583)
Q Consensus 162 ~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~-~~-~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G 239 (583)
....||+..+.|....|+. .|.+.+++.+-+.. .. ...|..-. .-+|-+.+.+.+.+ -.+++|.+ .+.
T Consensus 55 g~EyiD~~ssw~~~~~Gha--npev~ral~~q~~k~~hs~~~~~t~e-av~l~~~l~~~~~~-----~~~~rvff--~ns 124 (433)
T KOG1401|consen 55 GKEYIDFTSSWAVTILGHA--NPEVARALAEQAKKLGHSSNGYFTLE-AVELEEVLSAVLGK-----GSAERVFF--CNS 124 (433)
T ss_pred cceeeeeccceeccccCCC--CHHHHHHHHHHHhhheeccCccccHH-HHHHHHHHHhcccC-----CCccEEEE--ecC
Confidence 4456888888887665643 46777776655543 11 12222211 33444444444432 26789999 999
Q ss_pred chhHHHHHHHHHHHhCCCCC-----EEEEcCCCChhh-HHHHhhcCCeEEEEecccCC--C----CCCChhhHHHHHHcC
Q psy14428 240 GSGSLRVGTAFLERFYPGVK-----TVYFPTPTWNGH-VRFCTDSRLNVGAYRYFDNK--T----NGLDFAGMMEDIKAM 307 (583)
Q Consensus 240 ~~~al~l~~~~l~~~~~~gd-----~Vlv~~P~y~~~-~~~~~~~G~~~~~v~~~d~~--~----~g~d~~~l~~~l~~~ 307 (583)
|++|.+.+..+.+.+...+. .|+...=+|..- ...+...+......|. |+- + .-=|...+++.++..
T Consensus 125 GTeAne~ALK~Ark~~~~~~~~~~t~~Iaf~nsyHG~tlgals~~~~s~y~~~~-~p~~p~v~~~~ynd~t~l~k~~~~h 203 (433)
T KOG1401|consen 125 GTEANETALKFARKFTGKKHPEKKTKFIAFENSYHGRTLGALSVTGNSKYGLPF-DPIAPDVVTAEYNDSTALEKLFESH 203 (433)
T ss_pred CcHHHHHHHHHHHHhhcccCCccceeEEEEecCcCCcchhHHHhhcccccCCCC-CCCCCceeecccCCHHHHHHHHHhC
Confidence 99999987655554432222 266555566543 3333333333333332 110 0 001678888888765
Q ss_pred CCCcEEEEeCCCCCCCC-CCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCccc
Q psy14428 308 PERSILFLQTSSHNPTG-VDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKN 386 (583)
Q Consensus 308 ~~~~~~i~i~~p~NPTG-~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~ 386 (583)
.....++++---+---| ...++|-++.|...|+++++++|.||+.-.|..-+ .......+ .-.+. |-++.|.
T Consensus 204 ~~~IaAVIvEPiqGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~tG~gR~g---~~~a~e~~-~~~PD---I~t~aK~ 276 (433)
T KOG1401|consen 204 KGEIAAVIVEPIQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQTGLGRLG---YGWAQEYF-GVTPD---ITTVAKP 276 (433)
T ss_pred CCceEEEEEecccCCCCcccCCHHHHHHHHHHHhhcCceEEeehhhhCccccc---hHHHHHHh-CcCCc---ceeehhh
Confidence 43444444433332233 33578889999999999999999999998876554 22222222 22222 4567899
Q ss_pred ccccCccceEEEEEcCCchhHHHHHHHHHHHHh---ccccCCChHHHHHHHHHhC---ChhhhhhhhhHHH
Q psy14428 387 MGLYGERVGTFSVLTPTSDETERIMSQLKILIR---GFYSNPPIHGARIVTEILS---DPKLKAQCDETER 451 (583)
Q Consensus 387 ~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~---~~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~ 451 (583)
++ .|+-+|..++ . +++.+.+.--.. ...++.++++-.++...++ ++++.+.+...-+
T Consensus 277 L~-gGlPigA~~v--~-----~kV~~~i~~~~~l~hg~Tf~gnpLacsa~~~~l~~l~~~e~~k~vs~~~k 339 (433)
T KOG1401|consen 277 LG-GGLPIGATGV--R-----DKVAEMISPGDHLYHGGTFSGNPLACSAGIKVLDELKDPETLKNVSKIGK 339 (433)
T ss_pred cc-CCceeEEEee--h-----HHHHhhcCCCCccccCcccCCChhhhhHHHHHHHHHcCHHHHHHHHHHHH
Confidence 98 9999999999 5 477777765333 3345667777766666554 6666555544433
|
|
| >PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00027 Score=74.31 Aligned_cols=239 Identities=11% Similarity=0.062 Sum_probs=133.0
Q ss_pred CCCChHHHHHHHHHhccC---CCCCCCCCCCC-------HHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHH
Q psy14428 180 PYVLPSVKEAERRIYEKN---LDHEYANIGGD-------AKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTA 249 (583)
Q Consensus 180 p~~~~~v~~a~~~~~~~~---~~~~Y~~~~G~-------~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~ 249 (583)
...++.+.+++.....+. ....+....-. .+.|+.++++++ . -+..+|+++ +.+++.+++.+
T Consensus 12 ~~~p~~V~~a~~~~~~~~~~~~~g~~~~~hr~~~f~~~~~~~~~~l~~l~~----~-~~~~~v~~~-~gsgt~~~Ea~-- 83 (360)
T PRK05355 12 AMLPEEVLEQAQQELLDWNGSGMSVMEISHRSKEFEAVAEEAEADLRELLN----I-PDNYKVLFL-QGGASLQFAMV-- 83 (360)
T ss_pred CCCCHHHHHHHHHHhhccccCCccccccCCCCHHHHHHHHHHHHHHHHHhC----C-CCCcEEEEE-cCCchHHHHHH--
Confidence 336688888877664220 01112222222 344445555443 2 123456661 45567777774
Q ss_pred HHHHhCCCCCEEEEcCCC-Chh-hHHHHhhcCCeEEEEecccCCCCCCChhhHHH-HHHcCCCCcEEEEeCCCCCCCCCC
Q psy14428 250 FLERFYPGVKTVYFPTPT-WNG-HVRFCTDSRLNVGAYRYFDNKTNGLDFAGMME-DIKAMPERSILFLQTSSHNPTGVD 326 (583)
Q Consensus 250 ~l~~~~~~gd~Vlv~~P~-y~~-~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~-~l~~~~~~~~~i~i~~p~NPTG~~ 326 (583)
+..+..+||++++..-+ |.. +..+++.+|.. ..+.. +......+..++++ .+ .++.+++.++...|.||+.
T Consensus 84 -~~nl~~~g~~~l~i~~G~fg~r~~~~a~~~g~~-~~~~~-~~~~g~~~~~~~~~~~l---~~~~~~V~~th~eTstGv~ 157 (360)
T PRK05355 84 -PMNLLGGGKKADYVDTGSWSKKAIKEAKKYGEV-NVAAS-SEDDGFTYIPPLDEWQL---SDDAAYVHYTSNETIDGTE 157 (360)
T ss_pred -HHhcCCCCCeEEEEECCHHHHHHHHHHHHhCCc-eEEec-ccccCCCCCCChhhccC---CCCCCEEEEccCCCcceEe
Confidence 44555568888877655 332 35577778865 55554 32122334444444 44 4467899999999999999
Q ss_pred CCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchh
Q psy14428 327 LSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDE 406 (583)
Q Consensus 327 ~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~ 406 (583)
.+ .+.+| +++++|+|-+-.--... ..+ +..+ +++.|--|.+|.|| +|.+++ +
T Consensus 158 ~~--~i~~i------~g~l~vVDavss~g~~~------idv----~~~d--~~~~ssqK~lgP~G--lg~l~~--s---- 209 (360)
T PRK05355 158 FH--ELPDT------GDVPLVADMSSDILSRP------IDV----SKFG--LIYAGAQKNIGPAG--LTIVIV--R---- 209 (360)
T ss_pred cC--ccccc------CCCcEEEEcCccccCcc------CCH----HHcc--EEEEeccccccCCc--eEEEEE--C----
Confidence 84 24444 79999999985433211 112 2223 78888889998666 588888 6
Q ss_pred HHHHHHHHHHH-----------H-hccccCCChHHHHHHHHHhC---Ch-hhhhhhhhHHHHHHHHHHHHh
Q psy14428 407 TERIMSQLKIL-----------I-RGFYSNPPIHGARIVTEILS---DP-KLKAQCDETERIMSQLKILIR 461 (583)
Q Consensus 407 ~~~li~~l~~~-----------~-~~~~~~~s~~~q~~~~~~l~---~~-~~~~~~~~~~~~~~~l~~~~r 461 (583)
+++++++... . .....++|...-.++.+.++ +. .++...++.++..+.+.+.++
T Consensus 210 -~~~l~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~aL~~aL~~i~~~gG~e~i~~r~~~l~~~l~~~l~ 279 (360)
T PRK05355 210 -EDLLGRALPSIPSMLDYKTHADNDSMYNTPPTFAIYLAGLVFKWLKEQGGVAAMEKRNQEKAALLYDAID 279 (360)
T ss_pred -HHHHhhcccCCChHHHHHHHHhcCCccCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHH
Confidence 4566555431 1 11234445555555444443 33 455555555555544444443
|
|
| >TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00052 Score=75.29 Aligned_cols=244 Identities=10% Similarity=-0.020 Sum_probs=148.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhCCCCC-C--------CCC--CCeEEEecCCchhHHHHHHHHHHHh-CC----------
Q psy14428 199 DHEYANIGGDAKFCKLAAQLAYGEDFP-A--------FKD--NRLAIVQGISGSGSLRVGTAFLERF-YP---------- 256 (583)
Q Consensus 199 ~~~Y~~~~G~~~Lr~aia~~~~~~~g~-~--------~~~--~~I~i~~t~G~~~al~l~~~~l~~~-~~---------- 256 (583)
...+.......++.+.+.+|+.+..+. + -.+ ..=++ |+||+.|.-.+..+.+.. .+
T Consensus 118 ~~~~~~spa~t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~--tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~ 195 (522)
T TIGR03799 118 LVKIETSKAFTPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAF--CSGGTVANITALWVARNRLLKADGDFKGVAR 195 (522)
T ss_pred cceeecCcchHHHHHHHHHHHHHHhccCcccchhhcccCCCCCCeEE--cCchHHHHHHHHHHHHHHhcccccccccccc
Confidence 344555666788888888888665321 0 011 22466 899999877653333321 11
Q ss_pred ------------CCCEEEEcCCCChhhHHHHhhcCC---eEEEEecccCCCCCCChhhHHHHHHcC---CCCcEEEEeCC
Q psy14428 257 ------------GVKTVYFPTPTWNGHVRFCTDSRL---NVGAYRYFDNKTNGLDFAGMMEDIKAM---PERSILFLQTS 318 (583)
Q Consensus 257 ------------~gd~Vlv~~P~y~~~~~~~~~~G~---~~~~v~~~d~~~~g~d~~~l~~~l~~~---~~~~~~i~i~~ 318 (583)
++..|++.+-........++..|. +++.||+ |+ ++.+|++.+++.+++. ..+..+++-+.
T Consensus 196 ~gl~~~~~~~~~~~~~v~~S~~~H~S~~kaa~~lglg~~~v~~vp~-d~-~g~~d~~~L~~~i~~~~~~g~~~~~vvata 273 (522)
T TIGR03799 196 EGLFAALKHYGYDGLAILVSERGHYSLGKAADVLGIGRDNLIAIKT-DA-NNRIDVDALRDKCAELAEQNIKPLAIVGVA 273 (522)
T ss_pred ccchhhhhhccCCceEEEECCCchHHHHHHHHHcCCCcccEEEEEe-CC-CCcCCHHHHHHHHHHHHHCCCCcEEEEEEe
Confidence 134677777777777788888888 7999999 54 4789999999988642 22333444445
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHh-cCcEEEEecCcccccccCccceEE
Q psy14428 319 SHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKE-VGQLCLAQSFSKNMGLYGERVGTF 397 (583)
Q Consensus 319 p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~-~~~vi~i~S~SK~~~l~GlRiG~l 397 (583)
.++.||.+-+ +++|+++|+++++++.+|-+|+....-. ...+...+. ..--.+..|.-|.++ .-.-+|.+
T Consensus 274 Gtt~tGaiDp---l~eIa~i~~~~g~~lHVDaA~gg~~~~~-----~~~r~~l~gle~aDSit~d~HK~l~-~P~g~G~l 344 (522)
T TIGR03799 274 GTTETGNIDP---LDEMADIAQELGCHFHVDAAWGGATLLS-----NTYRHLLKGIERADSVTIDAHKQLY-VPMGAGMV 344 (522)
T ss_pred cCcCCCCcCC---HHHHHHHHHHcCCeEEEEchhhhHHHhC-----HHHHHHhcCchhCCEEEEChhhcCC-cCcccEEE
Confidence 6678998877 5666888999999999999997643211 111221111 112346678899665 33557999
Q ss_pred EEEcCCchhHHHHHHHHHHHHhc------------cc-cC--CChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHh
Q psy14428 398 SVLTPTSDETERIMSQLKILIRG------------FY-SN--PPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIR 461 (583)
Q Consensus 398 v~~~p~~~~~~~li~~l~~~~~~------------~~-~~--~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r 461 (583)
+. .++ .+.+.+...... .. .+ .-.+..+++.+.+....++..+++..+..+.+.+.++
T Consensus 345 lv--r~~----~~~~~~~~~~~Yl~~~~~~d~~~~~legsR~~~al~lw~aL~~lG~~G~~~ii~~~~~la~~l~~~L~ 417 (522)
T TIGR03799 345 LF--KDP----ALMSAIEHHAEYILRKGSKDLGSHTLEGSRPGMAMLVYAGLHIIGRKGYELLIDQSIEKAKYFADLIQ 417 (522)
T ss_pred EE--eCH----HHHHHhccCcchhcCCCCCccccceeecCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88 542 344444331000 00 11 1123355666677767777777766666665555544
|
This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent). |
| >PRK06149 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00046 Score=81.70 Aligned_cols=250 Identities=12% Similarity=0.031 Sum_probs=135.7
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccC-CCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCC
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKN-LDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGIS 239 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~-~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G 239 (583)
.+...+|+..|.. ..|. -.+.+.+++.+.+... ....| . .+....+++.+..... -..+.+.+ +++
T Consensus 583 dG~~ylD~~~~~~--~lGh--~hp~v~~Ai~~q~~~l~~~~~~----~-~~~~~elae~L~~~~p--~~~~~v~f--~~S 649 (972)
T PRK06149 583 AGRSYLDMVNNVT--VLGH--GHPRLAAAAARQWSLLNTNSRF----H-YAAVAEFSERLAALAP--DGLDTVFL--VNS 649 (972)
T ss_pred CCCEEEECCCCcc--ccCC--CCHHHHHHHHHHHHhccccccc----c-CHHHHHHHHHHHHhCC--CCcCEEEE--eCC
Confidence 3456677776543 2443 2366777766655431 11112 1 1233444444433211 11258888 999
Q ss_pred chhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHH-hh-------cCC------eEEEEecccCCC--CC-CC-----h
Q psy14428 240 GSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFC-TD-------SRL------NVGAYRYFDNKT--NG-LD-----F 297 (583)
Q Consensus 240 ~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~-~~-------~G~------~~~~v~~~d~~~--~g-~d-----~ 297 (583)
|++|.+.+..+.+.... ...|+..+-+|.+..... .. .+. .+..++..+... ++ .+ .
T Consensus 650 GsEA~e~AlklAr~~tg-r~~ii~~~~~yHG~t~ga~~~s~~~~~~~~~~~~~~~~v~~~~~p~~~~~~~~~~~~~~~~~ 728 (972)
T PRK06149 650 GSEANDLAIRLAWAASG-RRDVVSVLEAYHGWTVATDAVSTSIADNPQALETRPDWVHPVESPNTYRGRFRGADSAADYV 728 (972)
T ss_pred chHHHHHHHHHHHHhcC-CCeEEEEeCCCCCcChhHhhhcCCccccccccCCCCCCeEEeCCCcccCCcCCCcccHHHHH
Confidence 99999988666656544 467877777777533111 00 000 122232211000 11 11 1
Q ss_pred hhHHHHHHc---CCCCcEEEEe-CCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHh
Q psy14428 298 AGMMEDIKA---MPERSILFLQ-TSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKE 373 (583)
Q Consensus 298 ~~l~~~l~~---~~~~~~~i~i-~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~ 373 (583)
+.+++.++. ...+..++++ |-..+--....+++-+++|.++|++||+++|.||+.-.|.--+ ........+ +-
T Consensus 729 ~~~~~~l~~~~~~~~~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~tGfGRtG--~~~~a~e~~-gv 805 (972)
T PRK06149 729 RDVVAQLEELDASGRGLAGFICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLG--HYFWGFEQQ-GV 805 (972)
T ss_pred HHHHHHHHHHhhcCCceEEEEEcccccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeehhcCCccC--ccchhhhhc-CC
Confidence 333333432 2233444443 3334443456788999999999999999999999997774433 111122221 11
Q ss_pred cCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHh-ccccCCChHHHHHHHHHhC
Q psy14428 374 VGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIR-GFYSNPPIHGARIVTEILS 438 (583)
Q Consensus 374 ~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~-~~~~~~s~~~q~~~~~~l~ 438 (583)
...++ +|+|.+| .|+-+|.+++ . +++++.+..... ...++.++++..++.+.|+
T Consensus 806 ~PDiv---t~gK~lg-~G~Pl~av~~--~-----~~i~~~~~~~~~~~sT~~gnP~~~aaala~L~ 860 (972)
T PRK06149 806 VPDII---TMAKGMG-NGHPLGAVIT--R-----REIAEALEAEGYFFSSTGGSPVSCRIGMAVLD 860 (972)
T ss_pred CCCEE---Eeccccc-CCeeeEEEEE--c-----HHHHhhhccCCcccCCCCCCHHHHHHHHHHHH
Confidence 23333 7899998 8999999999 5 577777753111 1223566666666655553
|
|
| >PLN02724 Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00027 Score=82.07 Aligned_cols=179 Identities=13% Similarity=0.069 Sum_probs=111.6
Q ss_pred CHHHHHHHHHHHhCCCCCCCCCC--CeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHH---HHhhcCCeE
Q psy14428 208 DAKFCKLAAQLAYGEDFPAFKDN--RLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVR---FCTDSRLNV 282 (583)
Q Consensus 208 ~~~Lr~aia~~~~~~~g~~~~~~--~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~---~~~~~G~~~ 282 (583)
+.+.|+.||++++. +++ .|++ |+|+++|+.+++..+ -..+||+|++..-.+..... .++..|+++
T Consensus 80 ~e~aR~~ia~~lga------~~~~~~VvF--tsnaT~alnlva~~l--~~~~gd~Iv~t~~eH~svl~~~~~a~~~G~~v 149 (805)
T PLN02724 80 IESARQQVLEYFNA------PPSDYACVF--TSGATAALKLVGETF--PWSSESHFCYTLENHNSVLGIREYALEKGAAA 149 (805)
T ss_pred HHHHHHHHHHHhCC------CccceEEEE--eCChHHHHHHHHHHC--CCCCCCeEEEeeccccchHHHHHHHHHcCCeE
Confidence 56788888888863 334 5788 999999999974332 13559999987555554433 344569999
Q ss_pred EEEecccCC-------CCCCCh--hhHHHHHH----c---CCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhc----
Q psy14428 283 GAYRYFDNK-------TNGLDF--AGMMEDIK----A---MPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQR---- 342 (583)
Q Consensus 283 ~~v~~~d~~-------~~g~d~--~~l~~~l~----~---~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~---- 342 (583)
..+++ +.+ ...++. +.+++.+. . ..++++++.++.-+|-||..++.++..++.+.+..+
T Consensus 150 ~~v~~-~~~~~~~~~~~g~~~~~~~~l~~~~~~~l~~~~~~~~~t~LVa~~~vsN~tG~i~pi~~i~~~~~~~~~~~~~~ 228 (805)
T PLN02724 150 IAVDI-EEAANQPTNSQGSVVVKSRGLQRRNTSKLQKREDDGEAYNLFAFPSECNFSGAKFPLDLVKLIKDNQHSNFSKS 228 (805)
T ss_pred Eeccc-hhccccccccccccccchhhhhhhhhhhhccccccCCCcceEEEEccccCCCCcCCHHHHHHHHHhcccccccC
Confidence 98887 411 112222 34444321 0 124568999999999999999988654444433222
Q ss_pred -CeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHH
Q psy14428 343 -HLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLK 415 (583)
Q Consensus 343 -~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~ 415 (583)
++++++|-+-.-=.. +..+. ..+--++..|+-|.+|.| --+|.+++ . +++++.+.
T Consensus 229 g~~~v~vDaaQ~~g~~------piDv~----~~~~Dfl~~S~HK~~GgP-~G~G~L~v--r-----~~~~~~l~ 284 (805)
T PLN02724 229 GRWMVLLDAAKGCGTS------PPDLS----RYPADFVVVSFYKIFGYP-TGLGALLV--R-----RDAAKLLK 284 (805)
T ss_pred cceEEEeehhhhcCCC------CCChh----hcCCCEEEEecceeccCC-CCceEEEE--e-----hhhhhhhc
Confidence 367899987432111 11122 224457888999988723 13699998 5 34555544
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=98.10 E-value=8.5e-05 Score=85.35 Aligned_cols=181 Identities=12% Similarity=0.098 Sum_probs=119.7
Q ss_pred CCCCCCC---CCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhC-----CCCCEEEEcCCCChh
Q psy14428 199 DHEYANI---GGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFY-----PGVKTVYFPTPTWNG 270 (583)
Q Consensus 199 ~~~Y~~~---~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~-----~~gd~Vlv~~P~y~~ 270 (583)
.+.|.|. +|..++...+..|+.+-.|.+ ++.+ +.+|+.+|-......++... .+.++|+++.-....
T Consensus 516 ~hPyqPe~~sqG~lq~i~elq~~l~eltGmd----~~Sl-~p~aGA~gE~agL~aiR~y~~~rge~~R~~vlip~saHgt 590 (939)
T TIGR00461 516 IHPFQPSNQVEGYQELIAQLEKWLCSITGFD----AISL-QPNSGAQGEYAGLRVIRSYHESRGENHRNICLIPVSAHGT 590 (939)
T ss_pred cCCCCchHHhHHHHHHHHHHHHHHHHHHCCC----Cccc-CCchHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccccCc
Confidence 4455543 677777777777776665554 2333 24444444332212233211 123578888877755
Q ss_pred hHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEec
Q psy14428 271 HVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDM 350 (583)
Q Consensus 271 ~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De 350 (583)
....++..|++++.++. |+ ++.+|++++++.+++...+++++++.+|+| +|.+-+ .+++|+++|++++.++++|-
T Consensus 591 nPasa~~~G~~Vv~V~~-d~-~G~iDle~L~~~i~~~~~~taaV~iT~pst-~G~~e~--~I~eI~~iah~~G~~v~VDg 665 (939)
T TIGR00461 591 NPASAAMAGMQVVPVNC-DQ-DGNIDLVDLKNKAEQHGDELAAVMVTYPST-HGVFEP--TIQHACDIVHSFGGQVYLDG 665 (939)
T ss_pred CHHHHHHCCCEEEEecc-CC-CCCcCHHHHHHHHhhcCCceEEEEEEeCCc-Cceecc--cHHHHHHHHHHcCCEEEEEe
Confidence 56668889999999998 53 478999999999965446889999999999 886653 37888999999999999999
Q ss_pred cCCC-CCCCCCCCchHHHHHHHHhcCcEEEEecCccccc----ccCccceEEEE
Q psy14428 351 AYLG-LTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMG----LYGERVGTFSV 399 (583)
Q Consensus 351 ~Y~~-l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~----l~GlRiG~lv~ 399 (583)
++.- +..-. . +...+--++..|.-|+|+ .-|=-+|.+.+
T Consensus 666 Aq~~al~~l~---~-------Pg~~GaDi~~~s~HKtf~~P~G~GGPg~G~i~v 709 (939)
T TIGR00461 666 ANMNAQVGLT---S-------PGDLGADVCHLNLHKTFCIPHGGGGPGMGPIGV 709 (939)
T ss_pred cChhhCCCCC---C-------ccccCCCEEEecCCccCCCCCCCCCCCeEEEEE
Confidence 9733 22110 0 122344577788888765 33445788888
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) [] | Back alignment and domain information |
|---|
Probab=98.08 E-value=9.2e-05 Score=77.71 Aligned_cols=196 Identities=18% Similarity=0.153 Sum_probs=104.3
Q ss_pred CChHHHHHHHHHhccCCCCCCC------CCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhC
Q psy14428 182 VLPSVKEAERRIYEKNLDHEYA------NIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFY 255 (583)
Q Consensus 182 ~~~~v~~a~~~~~~~~~~~~Y~------~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~ 255 (583)
..+.+.+++...+.+....+|+ ...-..++.+...+...+-++..- .++-+-|+..+|+.|... ++..++
T Consensus 32 ~Sp~v~~al~S~l~nkyaeg~pg~ryy~G~~~id~iE~la~~ra~~lF~~~~-~~w~anvqp~SGs~An~a---v~~aLl 107 (399)
T PF00464_consen 32 MSPAVREALGSDLTNKYAEGYPGKRYYGGCEYIDEIEELAIERAKELFGAEP-KEWYANVQPHSGSQANLA---VYMALL 107 (399)
T ss_dssp --HHHHHHHTSGGGGS-TTEETTEESSSSTHHHHHHHHHHHHHHHHHHT-ST-TTEEEE---SSHHHHHHH---HHHHHT
T ss_pred cCHHHHHHhCCcceeeccccCCCcccccCcchhhHHHHHHHHHHHHHhCCCc-ccceEEeecCCchHHHHH---HHHHHH
Confidence 4567777776666542222332 122223333333333333333321 122233455666667665 455677
Q ss_pred CCCCEEEEcCCCChhhHHH-----H-----hhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCC
Q psy14428 256 PGVKTVYFPTPTWNGHVRF-----C-----TDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGV 325 (583)
Q Consensus 256 ~~gd~Vlv~~P~y~~~~~~-----~-----~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~ 325 (583)
+|||+|+..++...++... . .....+.+.+++ |+++..+|.+.+++.+++. ++++|++.--..|
T Consensus 108 ~pGD~Im~l~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~~-d~~~~~ID~d~l~~~a~~~--kPklIi~G~S~y~--- 181 (399)
T PF00464_consen 108 KPGDTIMGLSLPHGGHLSHGSSVNFKKISASGLYFESVPYPV-DPDTGLIDYDELEKLAKEH--KPKLIICGASSYP--- 181 (399)
T ss_dssp -TT-EEEEEEGGGT--GGGT-TTSHSBSSHHHHHSEEEEEEB--TTTSSB-HHHHHHHHHHH----SEEEEE-SSTS---
T ss_pred hhcCcEEecChhhcccccccccccccccccccceEEEEeeee-ecCCCeECHHHHHHHHhhc--CCCEEEECchhcc---
Confidence 8899999998876655321 1 223457889999 7777899999999988654 4556665332222
Q ss_pred CCCHHHHHHHHHHHHhcCeEEEEeccCC-CCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEE
Q psy14428 326 DLSEDQWRQLAVVVKQRHLYPFFDMAYL-GLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSV 399 (583)
Q Consensus 326 ~~s~~~~~~l~~~a~~~~i~iI~De~Y~-~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~ 399 (583)
=.-+++++.++|.+.|.+|+.|-++. .|.-.+. -+.|+. . --|+.+|.-|+| +|=|-|.+++
T Consensus 182 --~~~d~~~~reIad~vga~l~~D~sH~~GLIa~g~--~~~P~~-----~-ADvvt~sThKtl--~GPrggiI~~ 244 (399)
T PF00464_consen 182 --RPIDFKRFREIADEVGAYLMADISHIAGLIAGGL--FPNPFP-----Y-ADVVTGSTHKTL--RGPRGGIILT 244 (399)
T ss_dssp --S---HHHHHHHHHHTT-EEEEE-TTTHHHHHTTS--S--GCC-----T-SSEEEEESSGGG---SSS-EEEEE
T ss_pred --CccCHHHHHHHHHhcCcEEEecccccccceehhe--ecCccc-----c-ceEEEeeccccc--cccCceEEEE
Confidence 23356777888899999999999963 3333331 111221 1 237888999998 8999999998
|
The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A .... |
| >PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=98.07 E-value=3.4e-05 Score=81.26 Aligned_cols=205 Identities=11% Similarity=0.062 Sum_probs=127.5
Q ss_pred hHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCC-----CCCeEEEecCCchhHHHHHHHHHHHhC---
Q psy14428 184 PSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFK-----DNRLAIVQGISGSGSLRVGTAFLERFY--- 255 (583)
Q Consensus 184 ~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~-----~~~I~i~~t~G~~~al~l~~~~l~~~~--- 255 (583)
..+.+.+......+ ...|.......++.+.+.+|+.+..|.+-+ ...=++ |+||++++..+....+...
T Consensus 54 ~i~~~~l~~~~n~n-~~~~~~~P~~~~~E~~vi~~l~~l~g~~~~~~~~~~~~G~~--t~Ggt~anl~al~aAR~~~~~~ 130 (373)
T PF00282_consen 54 SILADLLASALNQN-GFTWEASPAATEIEREVIRWLADLFGLPESFTFSKDAGGVF--TSGGTEANLYALLAARERALPR 130 (373)
T ss_dssp HHHHHHHHHHHT-B-TTSTTTSHHHHHHHHHHHHHHHHHTTGSGGTTSTTTSEEEE--ESSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccc-ccccccccccccchHHHHHHHHHHhCCcccccccCCCceeE--eccchHHHHHHHHHHHHHHhhh
Confidence 34555555555432 455655667788999999999988776622 123456 9999999876532322211
Q ss_pred --CC-----CC-EEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCC---cEEEEeCCCCCCCC
Q psy14428 256 --PG-----VK-TVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPER---SILFLQTSSHNPTG 324 (583)
Q Consensus 256 --~~-----gd-~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~---~~~i~i~~p~NPTG 324 (583)
.. ++ .|++.+-+.......+..+|+.++.||+ |+ ++.+|++.+++.+++...+ ..+++.+-..-.||
T Consensus 131 ~~~~~~~~~~~~~i~~s~~aH~S~~Kaa~~lGlg~~~I~~-~~-~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~G 208 (373)
T PF00282_consen 131 SKAKGVEEIPKPVIYVSEQAHYSIEKAARILGLGVRKIPT-DE-DGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTG 208 (373)
T ss_dssp HHHHTTTHCSSEEEEEETTS-THHHHHHHHTTSEEEEE-B-BT-TSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTS
T ss_pred hhhcccccccccccccccccccHHHHhcceeeeEEEEecC-Cc-chhhhHHHhhhhhcccccccccceeeeccCCCcccc
Confidence 00 12 4556665666678899999999999999 55 4689999999988764222 33455555666677
Q ss_pred CCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcE-EEEecCcccccccCccceEEEEEcCC
Q psy14428 325 VDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQL-CLAQSFSKNMGLYGERVGTFSVLTPT 403 (583)
Q Consensus 325 ~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~v-i~i~S~SK~~~l~GlRiG~lv~~~p~ 403 (583)
.+ |.+.+|.++|+++++|+-+|-+|+...+-.. . .+.+...-+++ =+.-++-|.++ .-.-.|+++. .+
T Consensus 209 a~---D~l~~i~~i~~~~~~wlHVDaA~gg~~~~~~--~---~~~~~~gi~~adSit~d~HK~l~-~P~~~~~~l~--r~ 277 (373)
T PF00282_consen 209 AI---DPLEEIADICEKYNIWLHVDAAYGGSALLSP--E---YRHLLFGIERADSITIDPHKWLG-VPYGCGVLLV--RD 277 (373)
T ss_dssp BB----SHHHHHHHHHHCT-EEEEEETTGGGGGGHC--T---TGGGGTTGGGESEEEEETTTTTS--SSS-EEEEE--SS
T ss_pred cc---cCHHHHhhhccccceeeeecccccccccccc--c---ccccccccccccccccchhhhhc-CCccceeEEe--ec
Confidence 55 7788899999999999999999998332110 0 11111111222 13346899887 6668999999 76
Q ss_pred c
Q psy14428 404 S 404 (583)
Q Consensus 404 ~ 404 (583)
+
T Consensus 278 ~ 278 (373)
T PF00282_consen 278 K 278 (373)
T ss_dssp G
T ss_pred c
Confidence 4
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A .... |
| >KOG1359|consensus | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00052 Score=67.08 Aligned_cols=216 Identities=15% Similarity=0.098 Sum_probs=117.6
Q ss_pred CCCccccCCccccCCCCCCCCChHHHHHHHHHhcc-CC-------CCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeE
Q psy14428 162 HPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEK-NL-------DHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLA 233 (583)
Q Consensus 162 ~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~-~~-------~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~ 233 (583)
..++++|...++- |.. ..|.+..+..+++++ +. .-+|.+. ...|...||++.+++ |-|+
T Consensus 66 ~k~ilnFcaNnYL---GLs-shPeii~a~~~aleeyGaGlssvrfIcGtq~i--Hk~LE~kiAqfh~rE-------D~il 132 (417)
T KOG1359|consen 66 DKKILNFCANNYL---GLS-SHPEIINAGQKALEEYGAGLSSVRFICGTQDI--HKLLESKIAQFHGRE-------DTIL 132 (417)
T ss_pred ccceeeecccccc---ccc-CChHHHHHHHHHHHHhCCCccceeEEecchHH--HHHHHHHHHHHhCCC-------ceEE
Confidence 4456777766653 322 235566665555544 10 1122111 255667777777653 3344
Q ss_pred EEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcC-CCCcE
Q psy14428 234 IVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAM-PERSI 312 (583)
Q Consensus 234 i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~-~~~~~ 312 (583)
. +.+-.|-.- ++..+..|.|.|+-.+-.......-++... ....+|+..++..+... ..+-+
T Consensus 133 y---pscfdANag---~feail~pedAvfSDeLNhASIIdGirLck-----------ry~h~dv~~l~~~l~~a~k~r~k 195 (417)
T KOG1359|consen 133 Y---PSCFDANAG---AFEAILTPEDAVFSDELNHASIIDGIRLCK-----------RYRHVDVFDLEHCLISACKMRLK 195 (417)
T ss_pred e---ccccccchH---HHHHhcChhhhhhccccccchhhhhhHHHh-----------hhccchhHHHHHHHHHhhhheEE
Confidence 3 222222221 122234446666555443333333222221 11233555666555433 34555
Q ss_pred EEEeCCCCCCCCCCCCH----HHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCccccc
Q psy14428 313 LFLQTSSHNPTGVDLSE----DQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMG 388 (583)
Q Consensus 313 ~i~i~~p~NPTG~~~s~----~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~ 388 (583)
+++ |-.++|. .-+++|.+++++||.++++||++.-+.++.. ..-....+--+.+-.|..++++|.+|
T Consensus 196 lv~-------TDg~FSMDGdiaPl~ei~~La~kYgaLlfiDecHaTgf~G~t--GrGt~E~~~vm~~vdiinsTLgKAlG 266 (417)
T KOG1359|consen 196 LVV-------TDGVFSMDGDIAPLEEISQLAKKYGALLFIDECHATGFFGET--GRGTAEEFGVMGDVDIINSTLGKALG 266 (417)
T ss_pred EEE-------ecceeccCCCcccHHHHHHHHHhcCcEEEEeecccceeecCC--CCChHHHhCCCCcceehhhhhhhhhc
Confidence 555 3333333 3577788899999999999999998877642 11122222123445688889999986
Q ss_pred ccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCC
Q psy14428 389 LYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNP 425 (583)
Q Consensus 389 l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~ 425 (583)
|.--||..+ | ..+++-++...+...++.
T Consensus 267 --ga~GGyttg--p-----~~li~llrqr~RpylFSn 294 (417)
T KOG1359|consen 267 --GASGGYTTG--P-----KPLISLLRQRSRPYLFSN 294 (417)
T ss_pred --CCCCCCccC--C-----hhHHHHHHhcCCceeecC
Confidence 555699999 7 578888887766654433
|
|
| >PRK13578 ornithine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00019 Score=80.40 Aligned_cols=174 Identities=16% Similarity=0.068 Sum_probs=110.1
Q ss_pred CCCC-HHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHH-HhhcCCeE
Q psy14428 205 IGGD-AKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRF-CTDSRLNV 282 (583)
Q Consensus 205 ~~G~-~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~-~~~~G~~~ 282 (583)
+.|. .+-.+.+|+.++.. .-.++ ++|++.++..+ +..++.+||.|++..-+.-..... +.+.|+++
T Consensus 172 ~eG~i~eAq~~AA~~fgAd-------~tyFl--vNGTS~gn~a~---i~a~~~~Gd~VLvdRN~HKSv~hgaLiLsGa~P 239 (720)
T PRK13578 172 HEGAAKDAQKHAAKVFNAD-------KTYFV--LNGTSASNKVV---TNALLTPGDLVLFDRNNHKSNHHGALIQAGATP 239 (720)
T ss_pred CChHHHHHHHHHHHHhCCC-------ceEEE--eCChhHHHHHH---HHHhcCCCCEEEeecccHHHHHHHHHHHcCCeE
Confidence 3443 44555555655432 34566 99999998874 455677799999999998877774 78899999
Q ss_pred EEEecccCCCCC----CChhh-----HHHHHHcCCC-------CcEEEEeCCCCCCCCCCCCHHHHHHHHHH-HHhcCeE
Q psy14428 283 GAYRYFDNKTNG----LDFAG-----MMEDIKAMPE-------RSILFLQTSSHNPTGVDLSEDQWRQLAVV-VKQRHLY 345 (583)
Q Consensus 283 ~~v~~~d~~~~g----~d~~~-----l~~~l~~~~~-------~~~~i~i~~p~NPTG~~~s~~~~~~l~~~-a~~~~i~ 345 (583)
++++. +-+.+| ++.+. +++++++..+ +.+++++.+|.- -|.+++.++ |++. +..++ +
T Consensus 240 VYl~P-~~n~~Gi~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~pTY-dG~~ydi~~---I~~~~~h~~~-~ 313 (720)
T PRK13578 240 VYLET-ARNPFGFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLGTY-DGTIYNARQ---VVDKIGHLCD-Y 313 (720)
T ss_pred EEeec-cccccCCcCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECCCC-cceeecHHH---HHHHhhccCC-c
Confidence 98865 222233 45444 7778866421 247777755532 399998654 4555 45667 9
Q ss_pred EEEeccCCCC-CCCCCCCchHHH-HHHHHhcCcEEEEecCcccccccCccceEEE
Q psy14428 346 PFFDMAYLGL-TSGDFDKDAFSL-RYFAKEVGQLCLAQSFSKNMGLYGERVGTFS 398 (583)
Q Consensus 346 iI~De~Y~~l-~~~~~~~~~~~~-~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv 398 (583)
|++||||... .|.+.-++.+.. .........++++.|.-|++ +++--+.++
T Consensus 314 llvDEAhgah~~F~p~~~~~p~~al~~GaD~p~i~v~QStHKtL--~alTQaS~L 366 (720)
T PRK13578 314 ILFDSAWVGYEQFIPMMADCSPLLLELNENDPGIFVTQSVHKQQ--AGFSQTSQI 366 (720)
T ss_pred EEEeCcchhhhccCcccccCChhhhhcCCCCCCeEEEEChhhcc--hhhhhHhhh
Confidence 9999998753 443310112211 12111234589999999997 567666444
|
|
| >COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00046 Score=74.47 Aligned_cols=166 Identities=14% Similarity=0.044 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEec-
Q psy14428 209 AKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRY- 287 (583)
Q Consensus 209 ~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~- 287 (583)
.+..+.+|+.++.. ...++ ++|++.|...+ ...++++||.|+++..+.-.....+-+.|+.++.+..
T Consensus 73 ~eAqe~aA~~fgAd-------~tyFv--vNGTS~ank~v---i~a~~~~GD~VLvdRN~HKSi~~glilaGa~Pvyl~p~ 140 (557)
T COG1982 73 KEAQELAARVFGAD-------HTYFV--VNGTSTANKAV---INAVLTPGDKVLVDRNCHKSIHHGLILAGATPVYLEPS 140 (557)
T ss_pred HHHHHHHHHHhCCC-------ceEEE--ECCccHHHHHH---HHhhcCCCCEEEecCCccHHHHHHHHHcCCceEEecCC
Confidence 44555555555432 24556 89999998874 4556777999999999998888888889998888754
Q ss_pred ccCC---CCCCChhhHHHHHHcCCCCcEEEEeCCCCCCC--CCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCC
Q psy14428 288 FDNK---TNGLDFAGMMEDIKAMPERSILFLQTSSHNPT--GVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDK 362 (583)
Q Consensus 288 ~d~~---~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPT--G~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~ 362 (583)
.++. -.+++.+.+.+++.+.....++.++ .||| |++++.+++ ++++.+.++|+..|++..-..-..
T Consensus 141 ~np~~gi~ggI~~~~~~~~l~~~~~~~k~~vi---tnpTYdGv~~n~~~i---~~~~~~~~a~v~~deah~~~~~~~--- 211 (557)
T COG1982 141 RNPLYGIIGGIPLETFKEALLAHPDAEKLAVI---TNPTYDGVCYNLRKI---VELLHHYGAWVLYDEAHPAHFDFS--- 211 (557)
T ss_pred CCccccccCCCCHHHHHHHHHhChhhheeEEE---ecCccceEeecHHHH---HHHHhhcCceEEhhhcCccccccc---
Confidence 2221 1578899999888765433256655 4556 999986554 666778899999999975332111
Q ss_pred chHHHHHHHHhcCcEEEEecCcccccccCccce-EEEE
Q psy14428 363 DAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVG-TFSV 399 (583)
Q Consensus 363 ~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG-~lv~ 399 (583)
+..+-. ....+.+++..|.-|..+ ++.-+ ++..
T Consensus 212 ~~l~~~--~~~~~~~~~tqS~HK~l~--alSQaS~iHv 245 (557)
T COG1982 212 PMLPES--ALNGGADFVTQSTHKLLA--ALSQASMIHV 245 (557)
T ss_pred ccCcch--hhhcCceEEEechhhhhh--hhhhhHHHhh
Confidence 111111 233578999999999874 55555 4444
|
|
| >PRK06148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0011 Score=78.80 Aligned_cols=258 Identities=14% Similarity=0.058 Sum_probs=140.3
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccC-CCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCC
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKN-LDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGIS 239 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~-~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G 239 (583)
.+...+|+..|.. ..|. -.|.+.+++.+.+... ....|. .+.+..+|+.+..... -.-+.+.+ +++
T Consensus 622 dG~~ylD~~~g~~--~lGH--~hp~v~~Ai~~q~~~l~~~~~~~-----~~~~~~lAe~L~~~~p--~~~~~v~f--~nS 688 (1013)
T PRK06148 622 RGRAYLDCFNNVC--HVGH--AHPRVVAAAARQAARLNTNTRYL-----HDAIVAYAERLTATLP--DGLTVAFF--VNS 688 (1013)
T ss_pred CCCEEEEcccChh--hcCC--CCHHHHHHHHHHHhhcCCcCCcC-----CHHHHHHHHHHHHhCC--CCcCEEEE--eCC
Confidence 3455677766642 3453 2467777776665431 112221 2334445555543221 11257888 999
Q ss_pred chhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhh-c--------C----CeEEEEecccCC--CCCC-C-------
Q psy14428 240 GSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTD-S--------R----LNVGAYRYFDNK--TNGL-D------- 296 (583)
Q Consensus 240 ~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~-~--------G----~~~~~v~~~d~~--~~g~-d------- 296 (583)
|++|.+.+..+.+.... ...|+..+-+|.+....... . + -.+..++..+.. .++. +
T Consensus 689 GsEA~e~AlklAr~~tG-r~~ii~~~~~YHG~t~~a~s~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 767 (1013)
T PRK06148 689 GSEANSLALRLARAHTG-QRDAIVLDHAYHGTTTELIDLSPYKFNRKGGKGRPDHVEVAEVPDSYRGPERWPDAEHGRRF 767 (1013)
T ss_pred cHHHHHHHHHHHHHhcC-CCeEEEEcCCccCCCcchhhcCchhhcccCCCCCCCCceEcCCCCccccCCCCChhhhHHHH
Confidence 99999998776666543 56788888777665321111 0 1 011111110000 0110 1
Q ss_pred hhhHHHHHHc---CCCCcEEEEe-CCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHH
Q psy14428 297 FAGMMEDIKA---MPERSILFLQ-TSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAK 372 (583)
Q Consensus 297 ~~~l~~~l~~---~~~~~~~i~i-~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~ 372 (583)
.+.+++.++. ......++++ |-..+--....+++-++++.++|+++|+++|.||+...|.--+ ........+ +
T Consensus 768 ~~~l~~~i~~~~~~~~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGfGRtG--~~~~a~e~~-g 844 (1013)
T PRK06148 768 AESVAEQIAAMAAKGRGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVG--SHWWAFETQ-G 844 (1013)
T ss_pred HHHHHHHHHhhhccCCceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCCC--Ccchhhhhc-C
Confidence 1234444432 1233444444 2333332246688999999999999999999999998885333 011122221 1
Q ss_pred hcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHH-hccccCCChHHHHHHHHHh---CChhhhhhh
Q psy14428 373 EVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILI-RGFYSNPPIHGARIVTEIL---SDPKLKAQC 446 (583)
Q Consensus 373 ~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~-~~~~~~~s~~~q~~~~~~l---~~~~~~~~~ 446 (583)
-.+.+ -+++|.+| .|+-+|.+++ . +++++.+..-. -...++.++++..++.+.+ +++.+.++.
T Consensus 845 v~PDi---vt~gK~lg-gG~Plgav~~--~-----~ei~~~~~~g~~~~~Tf~gnpla~aaa~a~L~~i~~e~l~~~~ 911 (1013)
T PRK06148 845 VVPDI---VTMGKPIG-NGHPMGAVVT--T-----REIADSFDNGMEYFNTFGGNPVSCAIGLAVLDIIEDEDLQRNA 911 (1013)
T ss_pred CCcce---eeeccccc-CCcceEEEEE--c-----HHHHhhccCCCccccCCCCCHHHHHHHHHHHHHHhhccHHHHH
Confidence 12233 45699998 8999999999 5 57877765321 1234556677766655544 344444433
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00033 Score=81.81 Aligned_cols=176 Identities=13% Similarity=0.157 Sum_probs=114.2
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHh-CCCCC----EEEEcCCCChhhHHHHhhcC
Q psy14428 205 IGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERF-YPGVK----TVYFPTPTWNGHVRFCTDSR 279 (583)
Q Consensus 205 ~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~-~~~gd----~Vlv~~P~y~~~~~~~~~~G 279 (583)
.+|..++...+.+++.+-.|. +++.+ +.+|+++|.......++.+ ..+|+ +|++++-.+......+...|
T Consensus 537 ~qG~l~~i~e~q~~l~eltG~----d~~sl-~~~~ga~ge~agL~a~r~~~~~~G~~~r~~vlis~~aH~snp~sa~~~G 611 (954)
T PRK05367 537 AAGYRELIDQLEAWLAEITGY----DAVSL-QPNAGAQGEYAGLLAIRAYHESRGEGHRDVCLIPSSAHGTNPASAVMAG 611 (954)
T ss_pred HHHHHHHHHHHHHHHHHHHCC----CCEEE-CccHHHHHHHHHHHHHHHHhhccCCCCCCEEEEEchhhhhhHHHHHHCC
Confidence 366777777777887766554 35655 2445555543332223322 23355 69999988877777889999
Q ss_pred CeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCC
Q psy14428 280 LNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGD 359 (583)
Q Consensus 280 ~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~ 359 (583)
++++.+++ |. +..+|++.+++.++....+..++++.+|++- |.. .+.+++|+++|+++|+++++|.++..-...-
T Consensus 612 ~~vv~v~~-d~-~G~iD~~~L~~~i~~~~~~la~V~it~pst~-G~~--e~~I~eI~~i~h~~G~~v~VDgA~~~al~~l 686 (954)
T PRK05367 612 MKVVVVAC-DE-NGNIDLDDLRAKAEEHADNLAAIMITYPSTH-GVF--EETIREICEIVHEHGGQVYLDGANMNAQVGL 686 (954)
T ss_pred CEEEEECC-CC-CCCcCHHHHHHHHhccCCCeEEEEEEcCCCC-eee--cCCHHHHHHHHHHcCCEEEEECcChhhccCC
Confidence 99999998 54 3689999999988654345677777777654 322 2347888999999999999999984221110
Q ss_pred CCCchHHHHHHHHhcCcEEEEecCccccccc----CccceEEEE
Q psy14428 360 FDKDAFSLRYFAKEVGQLCLAQSFSKNMGLY----GERVGTFSV 399 (583)
Q Consensus 360 ~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~----GlRiG~lv~ 399 (583)
. . +...+--++..|.-|+|+.| |=-+|.+.+
T Consensus 687 ---~--~----pg~~GADi~~~s~HK~f~~P~G~GGPg~G~l~v 721 (954)
T PRK05367 687 ---A--R----PGDIGADVSHLNLHKTFCIPHGGGGPGVGPIGV 721 (954)
T ss_pred ---C--C----hhhcCCCEEEecCcccCCCCcCCCCCceEEEee
Confidence 0 0 11123346677788987532 334677777
|
|
| >COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00091 Score=68.43 Aligned_cols=204 Identities=18% Similarity=0.172 Sum_probs=125.6
Q ss_pred CChHHHHHHHHHhccCCCCC-----CC-CCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhC
Q psy14428 182 VLPSVKEAERRIYEKNLDHE-----YA-NIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFY 255 (583)
Q Consensus 182 ~~~~v~~a~~~~~~~~~~~~-----Y~-~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~ 255 (583)
..+.+.++.-..+.+....+ |. -..=..++.+...+..++-+|.+ --||-. .+|++..... +..+.
T Consensus 38 ~S~aV~~A~gS~ltnKYAEGyPgkRyYgGce~VD~vE~laierak~LFga~--~anVQP--hSGs~AN~av----~~All 109 (413)
T COG0112 38 TSPAVMEAQGSDLTNKYAEGYPGKRYYGGCEYVDEVEELAIERAKKLFGAE--YANVQP--HSGSQANQAV----YLALL 109 (413)
T ss_pred CCHHHHHHHhhhhhhccccCCCCccccCCCeeHHHHHHHHHHHHHHHhCCC--ccccCC--CCchHHHHHH----HHHHc
Confidence 45788888777665522222 32 22223444444444444434322 234444 6666544432 34466
Q ss_pred CCCCEEEEcCCCChhhHHHH---hhcC--CeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCH-
Q psy14428 256 PGVKTVYFPTPTWNGHVRFC---TDSR--LNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSE- 329 (583)
Q Consensus 256 ~~gd~Vlv~~P~y~~~~~~~---~~~G--~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~- 329 (583)
+|||+|+-.+-....+..-- ...| .+++.+++ |.+++.+|.|.+++...+. ++++++.. +..+++
T Consensus 110 ~pGDtimgm~l~~GGHltHg~~v~~sG~~~~~v~Y~v-d~et~~IDyD~~~k~a~e~--kPK~ii~G------~SaY~r~ 180 (413)
T COG0112 110 QPGDTIMGLDLSHGGHLTHGSPVNFSGKLFNVVSYGV-DPETGLIDYDEVEKLAKEV--KPKLIIAG------GSAYSRP 180 (413)
T ss_pred CCCCeEecccCCCCCcccCCCCCCccceeEEeEeccc-ccccCccCHHHHHHHHHHh--CCCEEEEC------ccccccc
Confidence 77999999888777665432 1112 47888888 7778899999999888653 55666632 222322
Q ss_pred HHHHHHHHHHHhcCeEEEEeccC-CCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHH
Q psy14428 330 DQWRQLAVVVKQRHLYPFFDMAY-LGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETE 408 (583)
Q Consensus 330 ~~~~~l~~~a~~~~i~iI~De~Y-~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~ 408 (583)
-+++++.++|.+-|.+++.|-++ .+|.-.+.. +.|+. .--|+..|--|+| +|=|-|.+.+ .+ +
T Consensus 181 id~~~~reIad~VGA~L~~DmAHiaGLVA~G~~--p~P~~------~AdvVTtTTHKTl--rGPrGG~Il~--~~----e 244 (413)
T COG0112 181 IDFKRFREIADEVGAYLMVDMAHVAGLIAGGVH--PNPLP------HADVVTTTTHKTL--RGPRGGIILT--ND----E 244 (413)
T ss_pred cCHHHHHHHHHHhCceEEehHHHHHHHHhcccC--CCCCC------ccceEeCCcccCC--CCCCceEEEe--cc----H
Confidence 25677888888999999999996 345444421 11221 1357888999998 7999999888 43 4
Q ss_pred HHHHHHHHHH
Q psy14428 409 RIMSQLKILI 418 (583)
Q Consensus 409 ~li~~l~~~~ 418 (583)
++.+++.+..
T Consensus 245 el~kkin~aV 254 (413)
T COG0112 245 ELAKKINSAV 254 (413)
T ss_pred HHHHHhhhhc
Confidence 7777777643
|
|
| >KOG1360|consensus | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00061 Score=69.26 Aligned_cols=206 Identities=13% Similarity=0.131 Sum_probs=121.9
Q ss_pred ChHHHHHHHHHhcc-CC-C---CC-CCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCC
Q psy14428 183 LPSVKEAERRIYEK-NL-D---HE-YANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYP 256 (583)
Q Consensus 183 ~~~v~~a~~~~~~~-~~-~---~~-Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~ 256 (583)
-+.+.+|+.+.++. +. . .+ -+...-...|.+.+|++.++.-..-+ ....+ ++.+.-. .|....+
T Consensus 187 Hp~V~~A~~~tl~~hG~GAGGTRNIsG~s~~hv~LE~eLA~LHqK~aALlF--sSCfV-----ANDstLf---tLak~lp 256 (570)
T KOG1360|consen 187 HPEVLDAMHDTLDRHGAGAGGTRNISGHSKHHVRLEAELADLHQKEAALLF--SSCFV-----ANDSTLF---TLAKKLP 256 (570)
T ss_pred ChHHHHHHHHHHHHcCCCcCCccccCCCCchhhhHHHHHHHHhcCcceeee--eeeee-----ccchHHH---HHHHHCC
Confidence 35777777776654 10 0 00 11233346899999999876432111 11222 2222211 3444555
Q ss_pred CCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcC-CCCcEEEEeCCCCCCCCCCCCHHHHHHH
Q psy14428 257 GVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAM-PERSILFLQTSSHNPTGVDLSEDQWRQL 335 (583)
Q Consensus 257 ~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~-~~~~~~i~i~~p~NPTG~~~s~~~~~~l 335 (583)
|-+|.-.+--......-++..++.-.- + .. + |++.|++.|++. ...++++-.-+-|.=+|.+-+.| +|
T Consensus 257 -gcei~SD~gNHASMI~GIrns~v~K~I--F-rH-N---D~~hL~~lL~~~~~svPKivAFEtVhSM~Gavcple---el 325 (570)
T KOG1360|consen 257 -GCEIFSDEGNHASMIQGIRNSRVPKHI--F-RH-N---DLDHLEQLLQSSPKSVPKIVAFETVHSMDGAVCPLE---EL 325 (570)
T ss_pred -CcEEeccccchHHHHHHhhhcCCccee--e-cc-C---CHHHHHHHHHhCCCCCCceEEEeeeeccCCCcCCHH---HH
Confidence 555544443344444444555543222 2 11 2 889999988776 34578888888888899988855 45
Q ss_pred HHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHH-hcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHH
Q psy14428 336 AVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAK-EVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQL 414 (583)
Q Consensus 336 ~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~-~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l 414 (583)
++++.+||.+-..||++.-=-|++... -+..-.. ...--|..+++.|.||.-| ||+.+ . ..+++.+
T Consensus 326 cDvah~yGAiTFlDEVHAVGlYG~rGa---GvgerdGvm~kvDiIsGTLgKafGcVG---GYIAa--t-----~~LvDmi 392 (570)
T KOG1360|consen 326 CDVAHKYGAITFLDEVHAVGLYGPRGA---GVGERDGVMHKVDIISGTLGKAFGCVG---GYIAA--T-----RKLVDMI 392 (570)
T ss_pred HHHHHHhCceeeeehhhhhccccCCCC---CccccCCcchhhhhcccchhhhccccc---ceehh--h-----hhHHHHH
Confidence 888999999999999986544442100 0000000 0112478899999999877 99998 5 4789988
Q ss_pred HHHHhccc
Q psy14428 415 KILIRGFY 422 (583)
Q Consensus 415 ~~~~~~~~ 422 (583)
+....-..
T Consensus 393 RSyAaGFI 400 (570)
T KOG1360|consen 393 RSYAAGFI 400 (570)
T ss_pred HHhcCceE
Confidence 87754443
|
|
| >PRK03080 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00069 Score=71.76 Aligned_cols=185 Identities=13% Similarity=0.050 Sum_probs=109.9
Q ss_pred CChH-HHHHHHHHhccCCCCCCCC--CCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecC-CchhHHHHHHHHHHHhCCC
Q psy14428 182 VLPS-VKEAERRIYEKNLDHEYAN--IGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGI-SGSGSLRVGTAFLERFYPG 257 (583)
Q Consensus 182 ~~~~-v~~a~~~~~~~~~~~~Y~~--~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~-G~~~al~l~~~~l~~~~~~ 257 (583)
+++. +.+++.+..... .+..+ ..=+.+.|+.++++++. -++++|++ +. +++.+++.+. ..+..+
T Consensus 23 ~~~~~v~~a~~~~~~~~--~hr~~~f~~~~~~~r~~l~~l~~~-----~~~~~v~~--~~gs~T~~~~~~~---~~l~~~ 90 (378)
T PRK03080 23 KRPGWQLEALADALLGR--SHRQKPVKALLKRVIEGTRELLSL-----PEGYEVGI--VPGSDTGAWEMAL---WSLLGA 90 (378)
T ss_pred CChHHHHHHHHhhhccc--CcCCHHHHHHHHHHHHHHHHHhCC-----CCCceEEE--ECCchHHHHHHHH---HhcCCC
Confidence 3445 777766433210 01111 12235667777777642 13457888 75 7899999863 333442
Q ss_pred -CCEEEEcCCCChhhHH--HHhhcCC-eEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHH
Q psy14428 258 -VKTVYFPTPTWNGHVR--FCTDSRL-NVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWR 333 (583)
Q Consensus 258 -gd~Vlv~~P~y~~~~~--~~~~~G~-~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~ 333 (583)
++.|++ +=.|+.-.. +.+..|+ ++..++. +. +..+|++. + .. ++++.+++..|.||...+.+++
T Consensus 91 ~~~~vi~-~g~f~~~~~~~~~~~~g~~~v~~~~~-~~-g~~~d~~~----i---~~-~~~V~~~h~~t~tG~~~pi~~I- 158 (378)
T PRK03080 91 RRVDHLA-WESFGSKWATDVVKQLKLEDPRVLEA-DY-GSLPDLSA----V---DF-DRDVVFTWNGTTTGVRVPVARW- 158 (378)
T ss_pred CcceEEE-eCHHHHHHHHHHHhhcCCCCceEecc-CC-CCCCCHhh----c---CC-CCCEEEEecCCccceeccchhh-
Confidence 445554 323443222 2356788 8888876 32 23455544 2 22 4567889999999999986555
Q ss_pred HHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccc-cCccceEEEEEcCCchhHHHHHH
Q psy14428 334 QLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGL-YGERVGTFSVLTPTSDETERIMS 412 (583)
Q Consensus 334 ~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l-~GlRiG~lv~~~p~~~~~~~li~ 412 (583)
++ +++|+++|+|-+-.--... ..+.. --+++.|.-|.++. +| +|++++ . +++++
T Consensus 159 --~~--~~~g~~~vVDa~qs~G~~p------idv~~------iD~~~~s~~K~l~~P~G--~g~l~v--~-----~~~~~ 213 (378)
T PRK03080 159 --IG--ADREGLTICDATSAAFALP------LDWSK------LDVYTFSWQKVLGGEGG--HGMAIL--S-----PRAVE 213 (378)
T ss_pred --cc--ccCCCeEEEecccccccCC------CCHHH------CcEEEEehhhhCCCCCc--eEEEEE--C-----HHHHH
Confidence 44 6789999999885433221 11211 13778888898853 55 699998 5 45666
Q ss_pred HHH
Q psy14428 413 QLK 415 (583)
Q Consensus 413 ~l~ 415 (583)
++.
T Consensus 214 ~~~ 216 (378)
T PRK03080 214 RLE 216 (378)
T ss_pred hhh
Confidence 654
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00027 Score=80.94 Aligned_cols=182 Identities=16% Similarity=0.136 Sum_probs=115.7
Q ss_pred CCCCCC---CCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHh-C----CCCCEEEEcCCCChh
Q psy14428 199 DHEYAN---IGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERF-Y----PGVKTVYFPTPTWNG 270 (583)
Q Consensus 199 ~~~Y~~---~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~-~----~~gd~Vlv~~P~y~~ 270 (583)
.+.|.| .+|+.++...+.+++.+-.|.+.. .+ +-.++.++-......++.. + +..++|+++.-.+..
T Consensus 529 ~hPyqp~e~sQG~lq~i~elq~~l~eLtGmd~~----Sl-~p~sGA~gE~A~Lmair~yh~~~Ge~~r~~vLIp~saHgt 603 (954)
T PRK12566 529 LHPFAPREQAEGYRAMIDELEAWLCAITGFDAI----CM-QPNSGAQGEYAGLLAIRRYHRSRGQSQRDICLIPSSAHGT 603 (954)
T ss_pred CCCCCchhhhcCHHHHHHHHHHHHHHHHCCCeE----ee-cCCchHHHHHHHHHHHHHHHHhcCCCCCCEEEeccccccc
Confidence 366777 889888887777777765554432 33 2223333432322233331 1 223567787755533
Q ss_pred hHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEec
Q psy14428 271 HVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDM 350 (583)
Q Consensus 271 ~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De 350 (583)
....+...|++++.++. |+ +..+|++++++.+++...++.++.+.+|++=. ++ .+.+++|+++|+++|+.++.|-
T Consensus 604 Npasa~~~GieVv~Vp~-D~-~G~iDle~L~a~I~~~~~~laaVmiT~Pnt~G--v~-e~~V~eI~~iah~~Galv~vDg 678 (954)
T PRK12566 604 NPASAQMAGMRVVIVEC-DP-DGNVDLDDLKAKAAAAGDRLSCLMITYPSTHG--VY-EEGIREICEVVHQHGGQVYMDG 678 (954)
T ss_pred CHHHHHHCCCEEEEecc-CC-CCCcCHHHHHHHhhccCCCEEEEEEEecCcCc--ee-cchHHHHHHHHHHcCCEEEEEe
Confidence 34557778999999999 64 46899999999986555677777777776544 33 5678999999999999999999
Q ss_pred cCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCccccccc----CccceEEEE
Q psy14428 351 AYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLY----GERVGTFSV 399 (583)
Q Consensus 351 ~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~----GlRiG~lv~ 399 (583)
+.. ..... +.. +...+--|+.++.-|+|+.| |.-+|.+.+
T Consensus 679 A~~-~a~~~-------l~~-Pg~~GADi~~~s~HKtf~~P~G~GGP~vG~iav 722 (954)
T PRK12566 679 ANL-NAQVG-------LAR-PADIGADVSHMNLHKTFCIPHGGGGPGMGPIGV 722 (954)
T ss_pred eCh-hhccC-------CCC-hhhcCCCEEEecCCcccCcCccCCCCccchhhh
Confidence 873 11111 000 12335568888989988532 444555444
|
|
| >KOG1404|consensus | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0015 Score=66.46 Aligned_cols=262 Identities=13% Similarity=0.073 Sum_probs=151.8
Q ss_pred CCCCCccccCCccccCCCCCCCCChHHHHHHHHHhcc--CCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEec
Q psy14428 160 DPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEK--NLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQG 237 (583)
Q Consensus 160 ~~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~--~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t 237 (583)
+.+...+|+..|.+....|.- -|.+..++.+-+.. -....|... -..+|-+++++.+-.. -..+++ +
T Consensus 47 e~G~ryLD~f~Gi~tvslGHc--hP~v~~a~~kQl~~l~H~t~~~~~~-pi~~~Ae~L~s~~P~~------l~~vfF--~ 115 (442)
T KOG1404|consen 47 EEGRRYLDAFGGIVTVSLGHC--HPDVVAAAVKQLKKLYHTTSGYLNP-PIHDLAEALVSKLPGD------LKVVFF--V 115 (442)
T ss_pred CCCceeehhhCCeEEEEcCCC--ChHHHHHHHHhhhhhEEeeccccCC-cHHHHHHHHHHhCCCC------ceEEEE--e
Confidence 456677898888887766643 35555554443322 123445432 2467777777766432 235888 9
Q ss_pred CCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhh-HHHHhhcCCeEEEEecc------------cCCC--CCCC-----h
Q psy14428 238 ISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGH-VRFCTDSRLNVGAYRYF------------DNKT--NGLD-----F 297 (583)
Q Consensus 238 ~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~-~~~~~~~G~~~~~v~~~------------d~~~--~g~d-----~ 297 (583)
++|++|.+++..+.+.....-| ++--.-+|... ...+...|......++. |+.. ++=+ -
T Consensus 116 nsGsEANelal~mar~Yt~~~d-iIa~r~~YHG~t~~t~glt~~~~~k~~~~~~~~~~~~~~~Pdp~r~~~~~~~~~e~~ 194 (442)
T KOG1404|consen 116 NSGSEANELALKMARLYTGNLD-IIARRNSYHGNTLYTLGLTGLSPWKQNFPGVASGVHHTMNPDPYRGIFGGSNEEEAS 194 (442)
T ss_pred cCCchHHHHHHHHHHHhcCCce-EEEeeccccCCchhhcccccCCcccccCCCCCCcccccCCCCcccccCCCCchhhhH
Confidence 9999999998655555555334 44444455443 33333333332222210 0000 0001 1
Q ss_pred ----hhHHHHHHcCCCCcEEEEeCCCCCCCCC--CCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHH
Q psy14428 298 ----AGMMEDIKAMPERSILFLQTSSHNPTGV--DLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFA 371 (583)
Q Consensus 298 ----~~l~~~l~~~~~~~~~i~i~~p~NPTG~--~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~ 371 (583)
+.+++.+....+.+.+-++.-+---+|. .+++--+++..+.|+++|.+.|.||+-..|..-+ .+-.|
T Consensus 195 d~~a~~l~d~i~~~~~~~vAafiaEtIqGvgG~v~~p~GYlka~~~~v~k~Ggl~IaDEVqtGfGRtG------~~wgf- 267 (442)
T KOG1404|consen 195 DRYAKELEDLILYDGPETVAAFIAETIQGVGGIVELPPGYLKAAYKVVRKRGGLFIADEVQTGFGRTG------HMWGF- 267 (442)
T ss_pred HHHHHHHHHHHHhcCCCceeEEEeehhccCCccccCCchHHHHHHHHHHHcCCEEEehhhhhcccccc------ccccc-
Confidence 3333344333444455444444433442 3566789999999999999999999998887654 22222
Q ss_pred HhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHH-hccccCCChHHHHHHHH---HhCChhhhhhhh
Q psy14428 372 KEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILI-RGFYSNPPIHGARIVTE---ILSDPKLKAQCD 447 (583)
Q Consensus 372 ~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~-~~~~~~~s~~~q~~~~~---~l~~~~~~~~~~ 447 (583)
+..+-+==|-|++|.+| .|+-+|.++. . +++.+.+.+.. -...++.++++-.+..+ .++++.+.++..
T Consensus 268 e~h~v~PDIvTmAKgiG-nG~Pl~AVvt--t-----~EIa~v~~~~~~~fnTyggnP~a~avg~aVL~Vikee~LqE~aa 339 (442)
T KOG1404|consen 268 ESHGVVPDIVTMAKGIG-NGFPLGAVVT--T-----PEIADVLNQKSSHFNTYGGNPVACAVGLAVLKVIKEENLQENAA 339 (442)
T ss_pred cccCCCccHHHHHhhcc-CCCcceeeec--C-----HHHHHHHHhccccccccCCCchhHHHHHHHHHHHHHHhHHHHHH
Confidence 22333445678899999 9999999998 5 57888888765 33445555555554444 444554444443
Q ss_pred h
Q psy14428 448 E 448 (583)
Q Consensus 448 ~ 448 (583)
.
T Consensus 340 ~ 340 (442)
T KOG1404|consen 340 E 340 (442)
T ss_pred H
Confidence 3
|
|
| >PRK08297 L-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0041 Score=67.24 Aligned_cols=248 Identities=8% Similarity=0.011 Sum_probs=124.3
Q ss_pred CCCccccCCccccCCCCCCCCChHHHH--HHHHHhccC-----CCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEE
Q psy14428 162 HPKKMNLGVGAYRGEDGKPYVLPSVKE--AERRIYEKN-----LDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAI 234 (583)
Q Consensus 162 ~~~~i~l~~g~~~~~~~~p~~~~~v~~--a~~~~~~~~-----~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i 234 (583)
+...+|+..|.+....|.- .|.+.+ ++.+.+..- ....| .. +....+++.+.+..+ +-.-+++.+
T Consensus 44 G~~ylD~~~g~~~~~lGh~--~p~v~~~~ai~~ql~~l~~~~~~~~~~-~~----~~~~~la~~l~~~~~-p~~~~~v~f 115 (443)
T PRK08297 44 GRRYLDMFTFFASSALGMN--HPALADDPEFRAELGRAALNKPSNSDV-YT----VEMARFVDTFARVLG-DPELPHLFF 115 (443)
T ss_pred CCEeeecccCHhhhcCCCC--ChHHhhHHHHHHHHHHhhhhccccCCc-CC----HHHHHHHHHHHhhcC-CCCCCEEEE
Confidence 4456777766665555543 245555 554444320 01111 11 222334443332211 112368999
Q ss_pred EecCCchhHHHHHHHHHHHhC------C----C-CCEEEEcCCCChhhHHHHhh-cCCeE-----------EEEecccCC
Q psy14428 235 VQGISGSGSLRVGTAFLERFY------P----G-VKTVYFPTPTWNGHVRFCTD-SRLNV-----------GAYRYFDNK 291 (583)
Q Consensus 235 ~~t~G~~~al~l~~~~l~~~~------~----~-gd~Vlv~~P~y~~~~~~~~~-~G~~~-----------~~v~~~d~~ 291 (583)
+++|++|.+.+..+.+... . + ..+|+...-+|.+....... .|... ..++.....
T Consensus 116 --~~SGsEAve~AlKlAr~~~~~~~~~~g~~~~~r~kii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (443)
T PRK08297 116 --VDGGALAVENALKVAFDWKSRKNEARGIDPALGTKVLHLRGAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDNPKLR 193 (443)
T ss_pred --eCchHHHHHHHHHHHHHHhhccccccCCCCCCCceEEEECCCcCCcchhhhhhcCCcccccccCCCCCccccCCCCCC
Confidence 9999999998766654331 1 1 25688888887766432222 22110 001100000
Q ss_pred ----CCC---C------ChhhHHHHHHcCCCCcEEEEeCCCCCCCC-CCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCC
Q psy14428 292 ----TNG---L------DFAGMMEDIKAMPERSILFLQTSSHNPTG-VDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTS 357 (583)
Q Consensus 292 ----~~g---~------d~~~l~~~l~~~~~~~~~i~i~~p~NPTG-~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~ 357 (583)
... . +++.+++.+.+...+..++++-.-+---| ...+++-+++|.++|++||+++|.||++..|..
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tGfGR 273 (443)
T PRK08297 194 FPLPGEDLEEVEALEAEALAQARAAFERHPHDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQTGVGL 273 (443)
T ss_pred CCCcccccchhhHHHHHHHHHHHHHHHhCCCcEEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCc
Confidence 000 0 13344555554344455555432222234 347889999999999999999999999998854
Q ss_pred CCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHH-----HhccccCCChHHHHH
Q psy14428 358 GDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKIL-----IRGFYSNPPIHGARI 432 (583)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~-----~~~~~~~~s~~~q~~ 432 (583)
.+ .......+ +-.+.++ +|+|.++ +|.+++ . +++.+.+... .....++.++++..+
T Consensus 274 tG---~~~a~~~~-gv~PDiv---~~gK~l~-----~~a~l~--~-----~~i~~~~~~~~~~~~~~~~T~~gnpl~~aa 334 (443)
T PRK08297 274 TG---TAWAYQQL-GVRPDIV---AFGKKTQ-----VCGIMA--G-----RRVDEVEDNVFAVSSRINSTWGGNLVDMVR 334 (443)
T ss_pred cc---hHHHHHhc-CCCCCEE---Eeccccc-----ccceec--c-----hHHHHhhhhhccCccccCCCCCccHHHHHH
Confidence 43 11122221 2223344 4799874 344444 2 2332221111 122344567777666
Q ss_pred HHHHhC
Q psy14428 433 VTEILS 438 (583)
Q Consensus 433 ~~~~l~ 438 (583)
+...++
T Consensus 335 a~a~L~ 340 (443)
T PRK08297 335 ARRILE 340 (443)
T ss_pred HHHHHH
Confidence 666554
|
|
| >TIGR03251 LAT_fam L-lysine 6-transaminase | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0079 Score=64.84 Aligned_cols=193 Identities=9% Similarity=-0.038 Sum_probs=103.8
Q ss_pred CCCCccccCCccccCCCCCCCCChHHH--HHHHHHhccCCCCCCCC-CCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEec
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVK--EAERRIYEKNLDHEYAN-IGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQG 237 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~--~a~~~~~~~~~~~~Y~~-~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t 237 (583)
.+...+|+..|.+....|.- .+.+. +++.+.+.......... ....+.+ ..+++.+.+..+ .-..+++.. +
T Consensus 36 dG~~ylD~~~g~~~~~lGh~--~p~v~~~~ai~~q~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~-~~~~~~v~f--~ 109 (431)
T TIGR03251 36 DGRRYLDMFSFFASMALGMN--HPALVDDLAFRARLGAAAVNKPSNSDVYTVAM-ARFVDTFARVLG-DPALPHLFF--I 109 (431)
T ss_pred CCCChhhcccChhhcCCCCC--ChhhhHHHHHHHHHHHhhhcccccCCCCCHHH-HHHHHHHHHhcC-CCCcCEEEE--e
Confidence 35567888777776666643 24554 55555443310000011 1112233 333333322110 112368888 9
Q ss_pred CCchhHHHHHHHHHHHhCC-----------CCCEEEEcCCCChhhHHHHh-hcCCe-E------------EEEecc----
Q psy14428 238 ISGSGSLRVGTAFLERFYP-----------GVKTVYFPTPTWNGHVRFCT-DSRLN-V------------GAYRYF---- 288 (583)
Q Consensus 238 ~G~~~al~l~~~~l~~~~~-----------~gd~Vlv~~P~y~~~~~~~~-~~G~~-~------------~~v~~~---- 288 (583)
++|++|.+.+..+.+.... ++.+|+...-+|.+...... ..|.. . +..|..
T Consensus 110 ~sGsEAve~AlklAr~~t~~~~~~~g~~~~~~~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 189 (431)
T TIGR03251 110 EGGALAVENALKTAFDWKSRHNQARGIPAALGTQVLHLRQAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDNPKLTFPL 189 (431)
T ss_pred CCcHHHHHHHHHHHHHHhhcchhhcCCCCCCCceEEEECCccCCcchhhhhccCCccccccCCCCCCCccCCCCcccCCc
Confidence 9999999987666554420 13678888877766543222 11211 0 001100
Q ss_pred cCCCCC-C------ChhhHHHHHHcCCCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCC
Q psy14428 289 DNKTNG-L------DFAGMMEDIKAMPERSILFLQTSSHNPTGVD-LSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGD 359 (583)
Q Consensus 289 d~~~~g-~------d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~-~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~ 359 (583)
+.+... . +++.+++.++....+..++++.--+.-.|.. .+++-+++|.++|++||+++|.||++..|...+
T Consensus 190 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG 268 (431)
T TIGR03251 190 DAPNLDQVIALEEEALRQARAAFAERPHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTGVGLTG 268 (431)
T ss_pred cccccchhhHHHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhccCccc
Confidence 000000 0 1333444554434555566654444445644 688999999999999999999999999886554
|
Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. |
| >TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0032 Score=68.18 Aligned_cols=192 Identities=13% Similarity=0.078 Sum_probs=106.6
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHH-hccCC--CCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEec
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRI-YEKNL--DHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQG 237 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~-~~~~~--~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t 237 (583)
.+...+|+..|.+....|.- .+.+.+++.+. ..... ...|.. ....+|-+.+++.+.... +-.-+++.+ +
T Consensus 56 dG~~ylD~~sg~~~~~lGh~--~p~i~~Ai~~q~~~~~l~~~~~~~~-~~~~~la~~l~~~l~~~~--p~~~~~v~f--~ 128 (464)
T TIGR00699 56 DGNRLLDLYSQISSIPIGYN--NPALLKAAQSPEMATTLINRPALGN-FPSKDWAKILKEGILKVA--PKGQDQVWT--G 128 (464)
T ss_pred CCCEEEEccCCHhhhcCCCC--CHHHHHHHHHHHHHHhhcccccCCc-HHHHHHHHHHHHhHHhhC--CCCcCEEEE--e
Confidence 45577899888887766653 46777776652 22211 111211 111233333333222111 112268999 9
Q ss_pred CCchhHHHHHHHHHHHhCC-----------------------CC---CEEEEcCCCChhhHHHHhh-cCC----------
Q psy14428 238 ISGSGSLRVGTAFLERFYP-----------------------GV---KTVYFPTPTWNGHVRFCTD-SRL---------- 280 (583)
Q Consensus 238 ~G~~~al~l~~~~l~~~~~-----------------------~g---d~Vlv~~P~y~~~~~~~~~-~G~---------- 280 (583)
++|++|.+.+..+.+.... .| ..|+...-+|.+....... .|.
T Consensus 129 ~SGsEAvE~AlKlAr~~~~~~~r~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~syHG~t~~als~t~~~~~~~~~~~~ 208 (464)
T TIGR00699 129 MSGSDANELAFKAAFMYYRSKQRGYQADFSEEENESCMDNQAPGSPDLSILSFKGAFHGRLFGSLSTTRSKPIHKLDIPA 208 (464)
T ss_pred CCcHHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccCCcCCEEEEECCCcCCccHHHHHhcCCccccccCCCC
Confidence 9999999987665543210 11 2688888888765432221 111
Q ss_pred -eEEEEecccCC-CCC-----------CChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCeEE
Q psy14428 281 -NVGAYRYFDNK-TNG-----------LDFAGMMEDIKAMPERSILFLQTSSHNPTGVDL-SEDQWRQLAVVVKQRHLYP 346 (583)
Q Consensus 281 -~~~~v~~~d~~-~~g-----------~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~-s~~~~~~l~~~a~~~~i~i 346 (583)
....+|..... ..+ -+++.+++.+++......++++-.-+.-.|... +++-+++|.++|+++|+++
T Consensus 209 ~~~~~~p~p~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~lc~~~g~lL 288 (464)
T TIGR00699 209 FDWPQAPFPSLKYPLEEHVKENAKEEQRCLEEVEDLIKKWHKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHNVAF 288 (464)
T ss_pred CCceecCCCCcccccccccccchhHHHHHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEE
Confidence 11122221000 000 024456666654334455555544444456655 7899999999999999999
Q ss_pred EEeccCCCCCCCC
Q psy14428 347 FFDMAYLGLTSGD 359 (583)
Q Consensus 347 I~De~Y~~l~~~~ 359 (583)
|.||+...|...+
T Consensus 289 I~DEV~tGfGrtG 301 (464)
T TIGR00699 289 IVDEVQTGVGATG 301 (464)
T ss_pred EEeeeeeCCCCCc
Confidence 9999998886543
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0023 Score=74.86 Aligned_cols=193 Identities=12% Similarity=0.073 Sum_probs=120.6
Q ss_pred ccCCccccCCCCCCCCChHHHHHHHHHhccCC-CCCCCCC-----CCC----HHHHHHHHHHHhCCCCCCCCCCCeEEEe
Q psy14428 167 NLGVGAYRGEDGKPYVLPSVKEAERRIYEKNL-DHEYANI-----GGD----AKFCKLAAQLAYGEDFPAFKDNRLAIVQ 236 (583)
Q Consensus 167 ~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~-~~~Y~~~-----~G~----~~Lr~aia~~~~~~~g~~~~~~~I~i~~ 236 (583)
-++.|.++. ..|+.+.+.+.+ ++. ...|+|. ||. .++++.++++.+ .++.|+.+
T Consensus 80 ~ig~G~y~~-----~~P~vi~~~i~~---~~~~~t~ytPyQ~EisQG~Leal~~~Qt~la~LtG------~~~anaSl-- 143 (954)
T PRK05367 80 YIGQGYYGT-----HTPPVILRNILE---NPAWYTAYTPYQPEISQGRLEALLNFQTMVADLTG------LEIANASL-- 143 (954)
T ss_pred ccCCCCCCC-----cCcHHHHHHHHh---CcchhhccCCCChHHHHHHHHHHHHHHHHHHHHHC------CChhhccc--
Confidence 356677642 244555443332 321 3456664 454 455666666654 56788889
Q ss_pred cCCchhHHHHHHHHHHHhCCC-CCEEEEcCCCChhhHHHH----hhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCc
Q psy14428 237 GISGSGSLRVGTAFLERFYPG-VKTVYFPTPTWNGHVRFC----TDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERS 311 (583)
Q Consensus 237 t~G~~~al~l~~~~l~~~~~~-gd~Vlv~~P~y~~~~~~~----~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~ 311 (583)
+.+++.+.+.+...++ +.+. +|+|++++-.|+.....+ +..|++++.++. +. |.+ ...+
T Consensus 144 ~d~aTAa~ea~~~a~~-~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~G~ev~~~~~-~~-----d~~---------~~~~ 207 (954)
T PRK05367 144 LDEATAAAEAMALAKR-VSKSKSNRFFVDDDVHPQTLDVLRTRAEPLGIEVVVGDA-AK-----ALD---------HDDV 207 (954)
T ss_pred cccHHHHHHHHHHhhh-hccCCCCEEEEcCccCHHHHHHHHHHHHhCCCEEEEecC-cc-----CCC---------cccE
Confidence 8999999887633322 2331 489999999999887654 557999999987 33 111 1234
Q ss_pred EEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCccc-----
Q psy14428 312 ILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKN----- 386 (583)
Q Consensus 312 ~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~----- 386 (583)
..+++.+| |-+|.+.+ +++|++.|+++|+++++|-.-.-+.... + +.+.+--|+++|.-|.
T Consensus 208 ~~vlvq~p-~~~G~i~d---~~~i~~~ah~~Gal~~vda~~~Al~~l~------~----pge~GaDi~vgs~qkfg~P~g 273 (954)
T PRK05367 208 FGVLLQYP-GTSGEVRD---YTALIAAAHARGALVAVAADLLALTLLT------P----PGEMGADIAVGSAQRFGVPMG 273 (954)
T ss_pred EEEEEecC-CCCeeecc---HHHHHHHHHHcCCEEEEEehhhhccCCC------C----hhhcCCCEEEeeCcccCCCCC
Confidence 44555555 77998885 7788999999999999975332222211 1 1233456777777776
Q ss_pred ccccCccceEEEEEcCCchhHHHHHHHH
Q psy14428 387 MGLYGERVGTFSVLTPTSDETERIMSQL 414 (583)
Q Consensus 387 ~~l~GlRiG~lv~~~p~~~~~~~li~~l 414 (583)
||-|| .|++.+ . +++++.+
T Consensus 274 ~GGP~--aGflav--r-----~~~~r~l 292 (954)
T PRK05367 274 FGGPH--AAYFAV--R-----DAYKRSM 292 (954)
T ss_pred CCCCC--EEEEEE--C-----HHHHhhC
Confidence 65565 899998 5 3555554
|
|
| >KOG2862|consensus | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.016 Score=57.55 Aligned_cols=158 Identities=13% Similarity=0.168 Sum_probs=101.0
Q ss_pred CeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCC-Chh-hHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCC
Q psy14428 231 RLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPT-WNG-HVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMP 308 (583)
Q Consensus 231 ~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~-y~~-~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~ 308 (583)
.-+++.++ |+.+++.+ +..+..|||.|++..-. |.. +....+.+|++|..++. |. .+...++.+.+++.+
T Consensus 69 ~tf~isgs-Gh~g~E~a---l~N~lePgd~vLv~~~G~wg~ra~D~~~r~ga~V~~v~~-~~-G~~~~le~i~~~lsq-- 140 (385)
T KOG2862|consen 69 QTFVISGS-GHSGWEAA---LVNLLEPGDNVLVVSTGTWGQRAADCARRYGAEVDVVEA-DI-GQAVPLEEITEKLSQ-- 140 (385)
T ss_pred ceEEEecC-CcchHHHH---HHhhcCCCCeEEEEEechHHHHHHHHHHhhCceeeEEec-Cc-ccCccHHHHHHHHHh--
Confidence 43443333 45677774 44555679999887665 553 46788899999999977 43 467899999999976
Q ss_pred CCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcC-cEEEEecCcccc
Q psy14428 309 ERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVG-QLCLAQSFSKNM 387 (583)
Q Consensus 309 ~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~-~vi~i~S~SK~~ 387 (583)
.+.++++++.-.--||+.-+ -+..+-++|++|+.++++|-+-+-=..+ +. .|+.+ .+.|-+| -|.+
T Consensus 141 h~p~~vfv~hgdsSTgV~q~--~~~~~g~lc~k~~~lllVD~VaSlggt~--------F~--mDewgVDvaytgS-QKaL 207 (385)
T KOG2862|consen 141 HKPKAVFVTHGDSSTGVLQD--LLAISGELCHKHEALLLVDTVASLGGTE--------FE--MDEWGVDVAYTGS-QKAL 207 (385)
T ss_pred cCCceEEEEecCccccccch--HHHHHHHHhhcCCeEEEEechhhcCCcc--------ce--ehhhcccEEEecc-hhhc
Confidence 45567777777777887655 2344566788999999999986421110 10 13322 3444443 5777
Q ss_pred cc-cCccceEEEEEcCCchhHHHHHHHHHHHH
Q psy14428 388 GL-YGERVGTFSVLTPTSDETERIMSQLKILI 418 (583)
Q Consensus 388 ~l-~GlRiG~lv~~~p~~~~~~~li~~l~~~~ 418 (583)
+. +|+-+ +.. + +...+++++.+
T Consensus 208 ~aP~GLsi--isf--S-----~ka~~~~~~rK 230 (385)
T KOG2862|consen 208 GAPAGLSI--ISF--S-----DKALEAIRDRK 230 (385)
T ss_pred CCCCCcce--eec--C-----HHHHHHHhhcc
Confidence 65 46544 333 3 35666776653
|
|
| >PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0002 Score=73.23 Aligned_cols=213 Identities=15% Similarity=0.090 Sum_probs=42.3
Q ss_pred CCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCC
Q psy14428 178 GKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPG 257 (583)
Q Consensus 178 ~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~ 257 (583)
|.....+.+.+++.+.......+.|.-..|-..-|..-.+.+-.. -...+.-++ ++....|+.+ ++..+..
T Consensus 14 GRs~l~~~a~~a~~~~a~~Y~nLE~dl~~G~Rg~R~~~v~~ll~~---ltgAeaA~V--vNnnaAAv~L---~l~~la~- 84 (367)
T PF03841_consen 14 GRSPLSEEAIEAVAEVASGYSNLEYDLETGKRGSRYAHVEELLCE---LTGAEAALV--VNNNAAAVLL---ALNTLAK- 84 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccc---ccccccccc--cccccccccc---ccccccc-
Confidence 333345666666666655444555644434332222221111111 123456667 6667777776 4555665
Q ss_pred CCEEEEcCCC---Ch---hhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCC--CCCCCH
Q psy14428 258 VKTVYFPTPT---WN---GHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPT--GVDLSE 329 (583)
Q Consensus 258 gd~Vlv~~P~---y~---~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPT--G~~~s~ 329 (583)
|.+|++..=. +. ....+++..|++++.|-.. + .-.+++.++++ ++++.+++-.++.|-. |..- .
T Consensus 85 ~~EvIvsRGelVeiGgsFRip~vm~~sGa~lvEVGtt-N---~t~~~Dye~AI---~e~Ta~ll~Vh~Sn~~i~GFt~-~ 156 (367)
T PF03841_consen 85 GKEVIVSRGELVEIGGSFRIPDVMRQSGARLVEVGTT-N---RTHLSDYEKAI---TENTAALLKVHTSNFRIQGFTG-E 156 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccc-c---ccccccccccc---cccccccccccccccccccccc-c
Confidence 7777765322 22 2456788889999888763 2 22566777777 6788888777777763 3222 2
Q ss_pred HHHHHHHHHHHhcCeEEEEeccCCCCC---CCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchh
Q psy14428 330 DQWRQLAVVVKQRHLYPFFDMAYLGLT---SGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDE 406 (583)
Q Consensus 330 ~~~~~l~~~a~~~~i~iI~De~Y~~l~---~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~ 406 (583)
-.++++++++++|++++|+|-.=+-+. .-+. .+.+.++.+.+ .+--+++.|=-|.+| |-..|.+++ .
T Consensus 157 ~~~~el~~la~~~~lp~i~DlgsG~l~dl~~~gl-~~Ep~v~~~~~-~GaDlV~fSGdKlLG--GPQaGiI~G--k---- 226 (367)
T PF03841_consen 157 VSLEELAELAKEHGLPVIVDLGSGLLVDLSPYGL-PDEPTVQEYLA-AGADLVTFSGDKLLG--GPQAGIIVG--K---- 226 (367)
T ss_dssp ----HHHHHHHHHT--EEEE-TTHHHHHHHTT-----------CCC-CT-SEEEEETTSSSS--S-S-EEEEE--E----
T ss_pred ccHHHHHHHHhhcCCcEEEECCCCCCcCcccccC-ccccHHHHHhh-cCCCEEEEECCCcCC--CCCeEEEEe--C----
Confidence 256788999999999999998752221 0010 01223433322 234577788899987 566899999 6
Q ss_pred HHHHHHHHHHHH
Q psy14428 407 TERIMSQLKILI 418 (583)
Q Consensus 407 ~~~li~~l~~~~ 418 (583)
+++|+++++..
T Consensus 227 -k~lI~~lk~~p 237 (367)
T PF03841_consen 227 -KELIEKLKKHP 237 (367)
T ss_dssp -HHHHHHHHHHH
T ss_pred -HHHHHHHhhCC
Confidence 68999998753
|
3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A. |
| >TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0063 Score=67.69 Aligned_cols=165 Identities=12% Similarity=0.044 Sum_probs=111.6
Q ss_pred HHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhC--C------
Q psy14428 185 SVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFY--P------ 256 (583)
Q Consensus 185 ~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~--~------ 256 (583)
.+.+.+.... +.....|....+...+.+.+.+++.+..|.+ +..=.+ |+||+.|...+..+.+... +
T Consensus 99 ila~~~a~~~-N~n~~~~e~SP~~t~lE~~vi~~la~l~G~~--~~~G~~--TsGGT~ANl~aL~~AR~~k~~p~a~~~~ 173 (608)
T TIGR03811 99 ILAYNYAMLW-NGNNVAYESSPATSQMEEEVGKEFATLMGYK--NGWGHI--VADGSLANLEGLWYARNIKSLPFAMKEV 173 (608)
T ss_pred HHHHHHHHHh-CCCCCccccCchHHHHHHHHHHHHHHHhCCC--CCCeEE--eCChHHHHHHHHHHHHHhhhccchhhhc
Confidence 3334434333 3224455566678899999999998877764 234446 8999998765432322211 0
Q ss_pred -----------------------------------------CC------CEEEEcCCCChhhHHHHhhcCC---eEEEEe
Q psy14428 257 -----------------------------------------GV------KTVYFPTPTWNGHVRFCTDSRL---NVGAYR 286 (583)
Q Consensus 257 -----------------------------------------~g------d~Vlv~~P~y~~~~~~~~~~G~---~~~~v~ 286 (583)
+| -+|+++.-........+...|+ +++.||
T Consensus 174 ~~~~~~~~~~w~l~n~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~vl~s~~aHyS~~KAa~ilGlG~~~vv~Vp 253 (608)
T TIGR03811 174 KPELVAGKSDWELLNMPTKEIMDLLESAGDQIDEIKAHSARSGKDLQKLGKWLVPQTKHYSWLKAADIIGIGLDQVIPVP 253 (608)
T ss_pred cccccccccchhhcccccccccccccccccchhhhhhhccccccccccceEEEECCCccHHHHHHHHHcCCCcccEEEee
Confidence 00 0467777666667788888888 689999
Q ss_pred cccCCCCCCChhhHHHHHHcC---CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCe--EEEEeccCCCCC
Q psy14428 287 YFDNKTNGLDFAGMMEDIKAM---PERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHL--YPFFDMAYLGLT 356 (583)
Q Consensus 287 ~~d~~~~g~d~~~l~~~l~~~---~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i--~iI~De~Y~~l~ 356 (583)
+ |+ ++.+|++.|++.|++. ..++.+++-+-..-.+|.+=+.+++.+|++.++++++ ++-+|-+|+.+.
T Consensus 254 v-D~-~~rmd~~~L~~~I~~~~~~g~p~~~VVataGTT~~GaiDpl~eI~~l~~~~~~~gl~~~lHVDAAyGG~~ 326 (608)
T TIGR03811 254 V-DS-NYRMDINELEKIIRKLAAEKTPILGVVGVVGSTEEGAVDGIDKIVALRNKLMKEGIYFYLHVDAAYGGYG 326 (608)
T ss_pred c-CC-CCcCCHHHHHHHHHHHHhcCCCeEEEEEEcCCcCCcccCCHHHHHHHHHHHHHcCCceeEeeeccccchh
Confidence 9 54 4789999999988653 3344556666777788877776666666666688898 699999999863
|
This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis. |
| >TIGR01366 serC_3 phosphoserine aminotransferase, putative | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.005 Score=64.75 Aligned_cols=188 Identities=7% Similarity=-0.084 Sum_probs=106.8
Q ss_pred CCChHHHHHHHHHhccCC-CCCCCC--CCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCC-chhHHHHHHHHHHHhCC
Q psy14428 181 YVLPSVKEAERRIYEKNL-DHEYAN--IGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGIS-GSGSLRVGTAFLERFYP 256 (583)
Q Consensus 181 ~~~~~v~~a~~~~~~~~~-~~~Y~~--~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G-~~~al~l~~~~l~~~~~ 256 (583)
..++.+.+++......-. ..++.+ ..-+.+.|+.++++++.. +.++|++ +.| ++.+++.+ +..+..
T Consensus 13 ~~~~~v~~a~~~~~~~~~~~~hr~~~f~~~~~~~r~~l~~l~~~~-----~~~~v~f--~~gs~T~a~~~~---~~~l~~ 82 (361)
T TIGR01366 13 KVRLEQLQALTTTAASLFGTSHRQAPVKNLVGRVREGLAELFSLP-----DGYEVIL--GNGGATAFWDAA---TFGLIE 82 (361)
T ss_pred CCCHHHHHHHHhcCccccccCcCChHHHHHHHHHHHHHHHHhCCC-----CCceEEE--ECCchhHHHHHH---HHhccc
Confidence 356777777553210000 112222 223466788888887521 2347777 655 99999986 333333
Q ss_pred CCCEEEEcCCCCh-hhHHHHhhc--CCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHH
Q psy14428 257 GVKTVYFPTPTWN-GHVRFCTDS--RLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWR 333 (583)
Q Consensus 257 ~gd~Vlv~~P~y~-~~~~~~~~~--G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~ 333 (583)
++.+.+..=.|. .+...+... +.++..++. +. +..++. .+ .++++++.++...|.||...+.+++
T Consensus 83 -~~~l~i~~G~~~~~~~~~a~~~~~~~~~~~~~~-~~-~~~~~~-----~~---~~~~~lV~~~h~et~tG~~~pi~~I- 150 (361)
T TIGR01366 83 -KKSLHLSFGEFSSKFAKAVKLAPWLGEPIIVTA-DP-GSAPEP-----QA---DPGVDVIAWAHNETSTGVAVPVRRP- 150 (361)
T ss_pred -ccccEEecCHHHHHHHHHHHhhhccCCceEEec-CC-CCCCCC-----cc---CCCCCEEEEcccCCccceecccccc-
Confidence 233333332343 223333331 235666665 32 222222 12 5688999999999999999997654
Q ss_pred HHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHH
Q psy14428 334 QLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQ 413 (583)
Q Consensus 334 ~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~ 413 (583)
++++++++|+|-+-.--... ..+.. --+++.|--|.+|.||- ++.+++ + ++++++
T Consensus 151 -----~~~~g~~~iVDavqs~g~~~------idv~~------~D~~~~s~~K~lg~~~G-l~~~~~--s-----~~~~~~ 205 (361)
T TIGR01366 151 -----EGSDDALVVIDATSGAGGLP------VDIAE------TDVYYFAPQKNFASDGG-LWLAIM--S-----PAALER 205 (361)
T ss_pred -----cccCCCeEEEEcCccccCCC------CCHHH------CCEEEEEchhhcCCCCc-eEEEEE--C-----HHHHhh
Confidence 47899999999985433211 11211 23577899999998753 555555 4 356665
Q ss_pred HH
Q psy14428 414 LK 415 (583)
Q Consensus 414 l~ 415 (583)
+.
T Consensus 206 ~~ 207 (361)
T TIGR01366 206 IE 207 (361)
T ss_pred hh
Confidence 54
|
This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria. |
| >PLN02452 phosphoserine transaminase | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.018 Score=60.54 Aligned_cols=228 Identities=11% Similarity=0.061 Sum_probs=125.1
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCC-Chh-hHHHHhhcCCeEEEEec
Q psy14428 210 KFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPT-WNG-HVRFCTDSRLNVGAYRY 287 (583)
Q Consensus 210 ~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~-y~~-~~~~~~~~G~~~~~v~~ 287 (583)
++-+.+.+.+++-.+++- ..+|+++ ..||+.+++.+ ...+.++|+++++..-+ |.. +...++.+|...+....
T Consensus 52 ~i~~~~~~~L~~l~~~p~-~y~v~~l-~Gsgt~~~ea~---~~nl~~~~~~~l~~~~G~fg~r~~~~a~~~g~~~~~~~~ 126 (365)
T PLN02452 52 SIIQKAEADLRELLDIPD-NYEVLFL-QGGASTQFAAI---PLNLCKPGDKADFVVTGSWSKKAAKEAKKYCKTNVIASG 126 (365)
T ss_pred HHHHHHHHHHHHHhCCCC-CceEEEE-eCccHHHHHHH---HHhcCCCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEec
Confidence 344444444444443321 1245552 56678888874 44566668988877655 432 34566777764433322
Q ss_pred ccC-CCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHH
Q psy14428 288 FDN-KTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFS 366 (583)
Q Consensus 288 ~d~-~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~ 366 (583)
.+. ...-++++.+ + ..+....+.++...-.||+.+.. +.++. ++++|+|-+-.-.... ..
T Consensus 127 ~~~~~~~~~~~~~~----~-~~~~~~~v~~~hnETstGv~~~~--~~~i~------~~~lvVDa~Ss~g~~p------id 187 (365)
T PLN02452 127 KDEKYTKIPSVSEW----E-LTPDAKFVHICANETIHGVEFKD--YPDVG------NVPLVADMSSNFLSKP------VD 187 (365)
T ss_pred CCCCCCCCCChHHc----C-CCCCCcEEEECCCCCCCcEecCc--ccccC------CCeEEEECCccccCcc------cC
Confidence 111 0112344443 1 13456777777777899986542 33332 3789999885433211 11
Q ss_pred HHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhh
Q psy14428 367 LRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQC 446 (583)
Q Consensus 367 ~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~ 446 (583)
+ +.. .+++ .|.-|.+|.|| +|.+++ . +++++++... .+...++...
T Consensus 188 v----~~~-~v~~-~saqK~lGP~G--l~~v~v--r-----~~~l~~~~~~-------~~~~~~~~~~------------ 233 (365)
T PLN02452 188 V----SKY-GVIY-AGAQKNVGPSG--VTIVII--R-----KDLIGNARPI-------TPGMLDYKIH------------ 233 (365)
T ss_pred H----HHc-CEEE-EecccccCCCC--eEEEEE--c-----HHHHhhcccC-------CCchhhHHHH------------
Confidence 2 222 2444 59999999899 688888 5 4666664311 1111111000
Q ss_pred hhHHHHHHHHHHHHhhccCCCccchhhHHHHhcCChhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhc
Q psy14428 447 DETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQWFE---ECKGMSNRISSIREELKSKILDK 513 (583)
Q Consensus 447 ~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~l~~~~~~~~~~~---~l~~~~~~~~~~r~~l~~~L~~~ 513 (583)
.+. ...+..||..+.+.+...+. |.. .++.+.++.+++.+.+.+.|++.
T Consensus 234 ---------~~~--~s~~~TP~v~~i~~l~~aL~-------~l~~~gGl~~~~~r~~~~a~~l~~~l~~~ 285 (365)
T PLN02452 234 ---------AEN--DSLYNTPPCFGIYMCGLVFE-------DLLAQGGLKAMEKRNIRKADLLYDAIDES 285 (365)
T ss_pred ---------Hhc--CCccCChhHHHHHHHHHHHH-------HHHHccCHHHHHHHHHHHHHHHHHHHHhC
Confidence 000 12334666666666655543 322 26778888899999999999874
|
|
| >PLN02397 aspartate transaminase | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00027 Score=76.08 Aligned_cols=72 Identities=56% Similarity=1.085 Sum_probs=62.4
Q ss_pred cceecccchhHHHHHHHHHHhhcCCCeEEecCCCCcCchhhhhhcCCCceeeeeccCCCCcccchhhhHHHHH
Q psy14428 2 AIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIK 74 (583)
Q Consensus 2 ~~~q~~~~tg~~~~~~~~~~~~~~~~~~~~~~~p~w~n~~~~~~~~~~~~~~y~~~~~~~~~~d~~~~~~~~~ 74 (583)
..+|+++|+||+.+...++..+.|+ .+|.+++|+|.+|..+++.+|.++..|++.++..-++|++.+.++++
T Consensus 118 ~~~~i~~g~Ga~~l~~~~~~~~~pG-d~Vlv~~P~y~~y~~~~~~~g~~~~~v~l~~~~~~~~d~~~l~~~l~ 189 (423)
T PLN02397 118 ATVQCLSGTGSLRLGAEFLARFYPG-STIYIPNPTWGNHHNIFRDAGVPVRTYRYYDPKTRGLDFDGLLEDLK 189 (423)
T ss_pred EeeecccchHHHHHHHHHHHHhCCC-CEEEEeCCCchhHHHHHHHcCCeEEEeecccCcCCccCHHHHHHHHH
Confidence 3578999999999999888876677 58999999999999999999999999998776667899998877654
|
|
| >PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.037 Score=63.92 Aligned_cols=252 Identities=13% Similarity=0.069 Sum_probs=136.6
Q ss_pred CccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCC-CHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchh
Q psy14428 164 KKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGG-DAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSG 242 (583)
Q Consensus 164 ~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G-~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~ 242 (583)
..+|+..+.|....|.. ..+.+.+++.+.+.. +.|....+ .-+-...+|+.+.+.-+. -.-++|++ +++|++
T Consensus 366 ~ylD~~sg~w~~~lG~h-~~p~I~~Ai~~Qa~r---l~hv~~~~~~hepa~~LAe~L~~~~~~-~~l~rVff--s~sGSe 438 (817)
T PLN02974 366 QQFDACASWWTQGPDPT-LQPELARAVAYAAGR---YGHVMFPENVHEPALRAAELLLGGPGK-GWASRVFF--SDNGST 438 (817)
T ss_pred eEEEcchhHHHhCCCcC-CCHHHHHHHHHHHhh---CCccccCccCCHHHHHHHHHHHhccCC-CCCCEEEE--CCchHH
Confidence 45677666666554411 246777777766654 11211111 234445566666542110 01358999 999999
Q ss_pred HHHHHHHHHHH-hC---C--------------CCCEEEEcCCCChhhHH-HHhhcCC---------e-----EEEE--ec
Q psy14428 243 SLRVGTAFLER-FY---P--------------GVKTVYFPTPTWNGHVR-FCTDSRL---------N-----VGAY--RY 287 (583)
Q Consensus 243 al~l~~~~l~~-~~---~--------------~gd~Vlv~~P~y~~~~~-~~~~~G~---------~-----~~~v--~~ 287 (583)
|++.+..+... .. . +..+|+.-.-+|.+-.. .+...|. . ...+ |.
T Consensus 439 AvE~AlKmA~r~y~~~~G~~~~~~~~~~~~~~~r~kIIa~~gsYHG~T~GAms~sg~~~~~~~~~~p~~~~~~~~~~~P~ 518 (817)
T PLN02974 439 AIEVALKMAFRKFIVDHGFLENSGNEKRGGDLIELKVLALDGSYHGDTLGAMEAQAPSVFTGFLQQPWYSGRGLFLDPPT 518 (817)
T ss_pred HHHHHHHHHHHHHHHhcCCCcccccccccccCCCCEEEEECCCcCCCCHHHHhhCCchhhhcccccccccCCCcccCCCc
Confidence 99987665522 21 0 12357777777765322 2111110 0 0001 10
Q ss_pred ---cc-------CCC-----------CC-----CC------------hhhHHHHHHc----CCCCcEEEEeCCC--CCCC
Q psy14428 288 ---FD-------NKT-----------NG-----LD------------FAGMMEDIKA----MPERSILFLQTSS--HNPT 323 (583)
Q Consensus 288 ---~d-------~~~-----------~g-----~d------------~~~l~~~l~~----~~~~~~~i~i~~p--~NPT 323 (583)
.+ +.. +. ++ .+.+++.|++ ...+..+-++.-| +.--
T Consensus 519 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~f~~~r~~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvI~EPviqGaG 598 (817)
T PLN02974 519 VGMRNGRWNISLPEGFSSGLEGEETTWESRDEVFDKTRDSTPLAKAYRSYIEQQLDEYEASAKNGHIAALIIEPVLHGAG 598 (817)
T ss_pred cccccccccccCCccccccccccccccccccccccccccchhhhHHHHHHHHHHHHhhccccCCCCEEEEEEeccccCCC
Confidence 00 000 00 01 1345555543 1222333334444 5666
Q ss_pred CCCC-CHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccC-ccceEEEEEc
Q psy14428 324 GVDL-SEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYG-ERVGTFSVLT 401 (583)
Q Consensus 324 G~~~-s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~G-lRiG~lv~~~ 401 (583)
|..+ +++-+++|.++|++||+++|.||+.-.|..-+ ....... .+-.+.++ .++|.++ .| +-+|.+++
T Consensus 599 Gmi~~~~~yl~~lr~lc~~~gilLI~DEV~TGfGRtG---~~fa~e~-~gv~PDIi---~~gKgLt-gG~~Plaa~l~-- 668 (817)
T PLN02974 599 GMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRLG---VESAWEL-LGCKPDIA---CYAKLLT-GGLVPLAATLA-- 668 (817)
T ss_pred CcccCCHHHHHHHHHHHHHhCCEEEEeecccCCCccc---chhhHHh-cCCCCCEE---eeccccc-CCCCccEEEEE--
Confidence 7654 78899999999999999999999999995544 1222222 12223333 4689998 89 69999999
Q ss_pred CCchhHHHHHHHHHHH------HhccccCCChHHHHHHHHHh
Q psy14428 402 PTSDETERIMSQLKIL------IRGFYSNPPIHGARIVTEIL 437 (583)
Q Consensus 402 p~~~~~~~li~~l~~~------~~~~~~~~s~~~q~~~~~~l 437 (583)
. +++.+.+..- .-...++.++++..++.+.|
T Consensus 669 ~-----~~I~~~f~~~~~~~~~~hg~Ty~gnpl~cAaala~L 705 (817)
T PLN02974 669 T-----EEVFEAFRGPSKLDALLHGHSYTAHPMGCAAAAKAL 705 (817)
T ss_pred c-----HHHHHhhccccccCCcccCCCCCcCHHHHHHHHHHH
Confidence 6 5788877521 11224456666666654444
|
|
| >COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0078 Score=59.29 Aligned_cols=181 Identities=19% Similarity=0.197 Sum_probs=117.7
Q ss_pred CCCC-CCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCC-ChhhHHH---
Q psy14428 200 HEYA-NIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPT-WNGHVRF--- 274 (583)
Q Consensus 200 ~~Y~-~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~-y~~~~~~--- 274 (583)
.+|. +..|-..|.+-.|+-++.+-. .-+.-+ ..++.|+..+ |-.++.|||+.+...=+ |.....+
T Consensus 58 tGYGydD~GRdtLe~vyA~vf~aE~a----~VRpq~---isGTHAI~~a---Lfg~LRpgDell~i~G~PYDTLeevIG~ 127 (416)
T COG4100 58 TGYGYDDLGRDTLERVYAQVFGAEAA----LVRPQI---ISGTHAIACA---LFGILRPGDELLYITGSPYDTLEEVIGL 127 (416)
T ss_pred CCCCccccchhHHHHHHHHHhccccc----eeeeee---ecchhHHHHH---HHhccCCCCeEEEecCCcchhHHHHhcc
Confidence 3443 456767777777777765321 112222 2378888875 44556669998754333 5555544
Q ss_pred -------HhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCC----CCCHHHHHHHHHHHHh--
Q psy14428 275 -------CTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGV----DLSEDQWRQLAVVVKQ-- 341 (583)
Q Consensus 275 -------~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~----~~s~~~~~~l~~~a~~-- 341 (583)
++..|+....+|+. . +..+|++.+.+.+ .++++++.+-. .+|. .++.+++++++++.++
T Consensus 128 rg~~~gSL~dfgi~Y~~v~Lt-~-~gkiD~~~v~~~i---~~~tkli~IQR---S~GY~~RpS~~I~eI~~~i~~vk~in 199 (416)
T COG4100 128 RGEGQGSLKDFGIKYKAVPLT-A-DGKIDIQAVKTAI---SDRTKLIGIQR---SKGYAWRPSLSIAEIEEMITFVKEIN 199 (416)
T ss_pred CCCCcccHHHhCcceeecccc-c-CCcccHHHHHHhc---CccceEEEEEe---ccCcCCCCcccHHHHHHHHHHHHhcC
Confidence 34556777788883 3 3689999999988 67888887732 2332 3788999999999986
Q ss_pred cCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCcc--ceEEEEEcCCchhHHHHHHHHHH
Q psy14428 342 RHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGER--VGTFSVLTPTSDETERIMSQLKI 416 (583)
Q Consensus 342 ~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlR--iG~lv~~~p~~~~~~~li~~l~~ 416 (583)
.|+++.+|.+|++|.-.- .+... +--+..+|+-|+-| -|+- -||+++ . ++++++..-
T Consensus 200 pn~ivFVDNCYGEFvE~~---EPt~v-------GaDliAGSLIKNpG-GgiaktGGYiaG--k-----~~~ve~~~y 258 (416)
T COG4100 200 PNVIVFVDNCYGEFVEEK---EPTHV-------GADLIAGSLIKNPG-GGIAKTGGYIAG--K-----AELVEAAAY 258 (416)
T ss_pred CCEEEEEeccchhhhhcc---Ccccc-------chhhhccceeeCCC-Cceeeccceeec--h-----HHHHHhhce
Confidence 479999999999998543 11111 22356788888776 3331 268888 5 467776653
|
|
| >TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.025 Score=59.53 Aligned_cols=134 Identities=13% Similarity=0.094 Sum_probs=84.4
Q ss_pred eEEEecCCchhHHHHHHHHHHHhC-CCCCEEEEcCCCChhh-H-HHHhhcCC-eEEEEecccCCCCCCChhhHHHHHHcC
Q psy14428 232 LAIVQGISGSGSLRVGTAFLERFY-PGVKTVYFPTPTWNGH-V-RFCTDSRL-NVGAYRYFDNKTNGLDFAGMMEDIKAM 307 (583)
Q Consensus 232 I~i~~t~G~~~al~l~~~~l~~~~-~~gd~Vlv~~P~y~~~-~-~~~~~~G~-~~~~v~~~d~~~~g~d~~~l~~~l~~~ 307 (583)
+++ +.+|+++++.+ +..+. ++|+.|++.. .|..- . .+++.+|+ ++..+.. +.+..++++.++.
T Consensus 61 ~~l--~GsGT~a~Eaa---~~nl~~~~g~~vLv~g-~FG~r~~~eia~~~g~~~v~~l~~--~~g~~~~~~~ve~----- 127 (374)
T TIGR01365 61 GIV--PASDTGAVEMA---LWSMLGCRGVDVLAWE-SFGKGWVTDVTKQLKLPDVRVLEA--EYGKLPDLKKVDF----- 127 (374)
T ss_pred EEE--CCchHHHHHHH---HHHcCCCCCCeEEEEC-HHHHHHHHHHHHhcCCCCcEEEcC--CCCCCCCHHHcCC-----
Confidence 555 78889999985 34444 4688998866 56554 4 78888999 4666654 2345677777642
Q ss_pred CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccc
Q psy14428 308 PERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNM 387 (583)
Q Consensus 308 ~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~ 387 (583)
. +. ++++..--.||+..+.+ +++..+ ++.++|+|-+=+-...+ . .+ + +--+++.|--|.+
T Consensus 128 ~-~~--v~~vhnETSTGv~npv~---~i~~~~--~~~lliVDavSs~g~~~-----l-~~----d--~iDv~~tgsQK~L 187 (374)
T TIGR01365 128 K-ND--VVFTWNGTTSGVRVPNG---DFIPAD--REGLTICDATSAAFAQD-----L-DY----H--KLDVVTFSWQKVL 187 (374)
T ss_pred C-CC--EEEecCCCchheecccc---cccccc--CCCcEEEEccchhcCCC-----C-Ch----h--HCcEEEEechhcc
Confidence 1 11 44666666889888764 333211 47899999985433221 0 11 1 1346778889999
Q ss_pred cccCccceEEEE
Q psy14428 388 GLYGERVGTFSV 399 (583)
Q Consensus 388 ~l~GlRiG~lv~ 399 (583)
++|+- ++++++
T Consensus 188 ~~ppG-ls~v~v 198 (374)
T TIGR01365 188 GGEGA-HGMLIL 198 (374)
T ss_pred CCCCc-eEEEEE
Confidence 87651 466666
|
This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri. |
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0084 Score=70.43 Aligned_cols=213 Identities=13% Similarity=0.052 Sum_probs=140.8
Q ss_pred HhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHH---hCCCCCEEEEcCCCCh
Q psy14428 193 IYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLER---FYPGVKTVYFPTPTWN 269 (583)
Q Consensus 193 ~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~---~~~~gd~Vlv~~P~y~ 269 (583)
.+.+...+.|.|+.|...+|..||.|++..+++++++++|+| .+.-..|++.+.++..- +++.+.+-.+| +.|.
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 489 (1082)
T PLN02672 413 ALKGLSYFPCEPPAGSKRFRNLIAGFMRIYHHIPLTPDNVVV--FPSRAVAIENALRLFSPRLAIVDEHLTRWLP-KKWL 489 (1082)
T ss_pred HHccCCCCCCCCCccchHHHHHHHHHHHHhcCCcCCccceEE--eccHHHHHHHHHHhhChHHHhhhhhhhccCC-HHHH
Confidence 333445678999999999999999999999999999999999 88888888775333211 12223233322 1232
Q ss_pred hhHHHHhhcC--------C--eEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHH
Q psy14428 270 GHVRFCTDSR--------L--NVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVV 339 (583)
Q Consensus 270 ~~~~~~~~~G--------~--~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a 339 (583)
..+...| . .|+.-|. .-+.+.+.+++. +..+++..--+ +-..+....+.|++.+
T Consensus 490 ---~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 553 (1082)
T PLN02672 490 ---TSLAIENATSDSKSDDVITVIEAPR--------QSDLVIELIKKL--KPQVVVTGMAD---FEMRTSTAFEHLLNVT 553 (1082)
T ss_pred ---hHhhhhcccccCccCCeEEEEeCCC--------cchHHHHHHHhC--CCeEEEEeccc---hhhhhHHHHHHHHHHH
Confidence 3222222 1 2222221 112444555433 34455522111 3345667889999999
Q ss_pred HhcCeEEEEecc-CCCCCCCCCCCchHHHHHHHH--hcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHH
Q psy14428 340 KQRHLYPFFDMA-YLGLTSGDFDKDAFSLRYFAK--EVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKI 416 (583)
Q Consensus 340 ~~~~i~iI~De~-Y~~l~~~~~~~~~~~~~~~~~--~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~ 416 (583)
++.|..++.|+. |.++.... .+...++.+.. ...+..++.++-|+--.+.+-+.+++. .+ +.+.+.|.+
T Consensus 554 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~ 625 (1082)
T PLN02672 554 AEIGARLFLDISDHLELSSLP--GSNGVLKYLAGHPLPSHAAIICGLVKNQVYSDLEVAFVIS--EN----EAVLKALSK 625 (1082)
T ss_pred HhhCcEEEEehhhheeeccCC--CcccHHHHhcCCCCCcchhHhhhhhhccccccceEEEEec--Cc----HHHHHHHHH
Confidence 999999999997 44554332 23334444432 234667888899988789999999997 43 589999999
Q ss_pred HHhccccCCChHHHHH
Q psy14428 417 LIRGFYSNPPIHGARI 432 (583)
Q Consensus 417 ~~~~~~~~~s~~~q~~ 432 (583)
.........+.++|.-
T Consensus 626 ~~~~~~~~~~~~~~~~ 641 (1082)
T PLN02672 626 TGEVLEGRTAIISQFY 641 (1082)
T ss_pred HHHhhccchHHHHHHH
Confidence 9999999999999984
|
|
| >COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.045 Score=58.16 Aligned_cols=263 Identities=11% Similarity=0.016 Sum_probs=143.3
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhcc-CCC--CCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEec
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEK-NLD--HEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQG 237 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~-~~~--~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t 237 (583)
.+...+|-..|.|....|.- .+.+.+++.+-+.. ... ...+... ..+|-+.+++..-+ -+-++|.. |
T Consensus 42 ~G~r~lDg~sg~W~~~~Gh~--~~~i~~Ai~~Q~~~l~~~~~~~~t~~P-a~~LA~~L~~~aP~-----~~l~~vFf--~ 111 (449)
T COG0161 42 DGRRYLDGMSGLWCVNHGHG--RPEIAEAIKKQLDKLPHVMFGGFTHEP-AIELAEKLAELAPE-----GGLDHVFF--T 111 (449)
T ss_pred CCCEEEecccHHHHhhcCcC--CHHHHHHHHHHHHhCCchhhcccCCch-HHHHHHHHHHhCCC-----CCccEEEE--e
Confidence 45677888889988776653 46777777666654 111 1111111 44555555554431 11478999 9
Q ss_pred CCchhHHHHHHHHHHHh----CCCCC-EEEEcCCCChhhHHH--------------HhhcCCeEEEEecccC----C-CC
Q psy14428 238 ISGSGSLRVGTAFLERF----YPGVK-TVYFPTPTWNGHVRF--------------CTDSRLNVGAYRYFDN----K-TN 293 (583)
Q Consensus 238 ~G~~~al~l~~~~l~~~----~~~gd-~Vlv~~P~y~~~~~~--------------~~~~G~~~~~v~~~d~----~-~~ 293 (583)
.+|++|.+.+..+.... ..|.. +++.-..+|.+-.-. +...-..+..+|.... . +.
T Consensus 112 ~sGSeAvEtAlKma~qY~~~~G~p~r~~~Isr~~gYHG~T~ga~Sv~g~~~~~~~~~~~ll~~~~~~~~P~~y~~~~~~~ 191 (449)
T COG0161 112 DSGSEAVETALKMALQYWRARGQPQRKKFISRRNGYHGDTLGAMSVGGPVALRHAFYDPLLPEVLHLPAPYAYRRGFFGE 191 (449)
T ss_pred CCchHHHHHHHHHHHHHHHhcCCCcceEEEEeccCcCcccchheeccCchhhhhhhccccccCceecCCCcccccCCCCC
Confidence 99999999876554332 12222 377777777543211 1111111222222110 0 00
Q ss_pred C-----CChhhHHHHHHcCCCCcEEEEeCCC-CCC-CCCC-CCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchH
Q psy14428 294 G-----LDFAGMMEDIKAMPERSILFLQTSS-HNP-TGVD-LSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAF 365 (583)
Q Consensus 294 g-----~d~~~l~~~l~~~~~~~~~i~i~~p-~NP-TG~~-~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~ 365 (583)
+ -..+.+++.+.+..+.+.+-++.-| .-- .|+. +++.-++++.++|++||+++|.||+--.|..-+ ...
T Consensus 192 ~~~~~~~~a~~le~~i~~~g~~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky~ILlI~DEV~tGFGRTG---~~F 268 (449)
T COG0161 192 GDEEFAEAADELEALILEHGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVATGFGRTG---KMF 268 (449)
T ss_pred ChHHHHHHHHHHHHHHHhcCcccEEEEEecccccccCCcccCChHHHHHHHHHHHHcCcEEEeecceeCCCcCc---hhh
Confidence 1 1245566666665534444334444 333 5644 466678999999999999999999998887665 111
Q ss_pred HHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHH------HhccccCCChHHHHHHHH---H
Q psy14428 366 SLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKIL------IRGFYSNPPIHGARIVTE---I 436 (583)
Q Consensus 366 ~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~------~~~~~~~~s~~~q~~~~~---~ 436 (583)
....+ +-.+.++ +++|.+.-.=+-+|.+++ . +++.+.+..- +.. .++.++++-.++.+ +
T Consensus 269 A~e~~-gi~PDi~---~~aKGLT~GY~Pl~a~l~--~-----~~I~~~~~~~~~~~f~HG~-TYsghPlacAaAla~L~i 336 (449)
T COG0161 269 ACEHA-GIVPDIL---CLAKGLTGGYLPLSAVLT--S-----DRIYEAFSDGDAGAFMHGH-TYSGNPLACAAALANLDI 336 (449)
T ss_pred hhhhc-CCCCCee---eecccccccchhhHhHhh--h-----HHHHHHHhcccCCeeccCC-ccccCHHHHHHHHHHHHH
Confidence 11111 1223344 357877534456676666 4 4777777763 223 33445555444443 3
Q ss_pred hCChhhhhhhhh
Q psy14428 437 LSDPKLKAQCDE 448 (583)
Q Consensus 437 l~~~~~~~~~~~ 448 (583)
++++.+.++...
T Consensus 337 ~e~e~l~~~~~~ 348 (449)
T COG0161 337 LEEEDLLERVAE 348 (449)
T ss_pred HHhcCHHHHHHH
Confidence 444444444433
|
|
| >KOG1357|consensus | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0014 Score=67.78 Aligned_cols=190 Identities=13% Similarity=0.113 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCeEEEecCC-chhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEec
Q psy14428 209 AKFCKLAAQLAYGEDFPAFKDNRLAIVQGIS-GSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRY 287 (583)
Q Consensus 209 ~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G-~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~ 287 (583)
.++.+.+|+|+... +-+++ ..| ++.+. .+..++.||.-|+-.+--......-++.-|+.+.-+.-
T Consensus 185 kelE~l~A~f~g~e-------~a~vF--~mGf~TNs~-----~~p~l~~~gsLIiSDelNHaSi~~GaRLSgAtiRVfkH 250 (519)
T KOG1357|consen 185 KELEELVARFLGVE-------DAIVF--SMGFATNSM-----NIPSLLGKGSLIISDELNHASLITGARLSGATTRVFRH 250 (519)
T ss_pred HHHHHHHHHhcCCc-------ceEEE--ecccccccc-----CcceeecCCcceeeccccchheeccccccCceEEEEec
Confidence 56777778877653 44555 333 11121 12234455766666555555555556667777766544
Q ss_pred ccCCCCCCChhhHHHHHHcC----C-----CCcEEEEeCCCCCCCCCCCCH----HHHHHHHHHHHhcCeEEEEeccCCC
Q psy14428 288 FDNKTNGLDFAGMMEDIKAM----P-----ERSILFLQTSSHNPTGVDLSE----DQWRQLAVVVKQRHLYPFFDMAYLG 354 (583)
Q Consensus 288 ~d~~~~g~d~~~l~~~l~~~----~-----~~~~~i~i~~p~NPTG~~~s~----~~~~~l~~~a~~~~i~iI~De~Y~~ 354 (583)
. |...+++.|+.. . +-.+++++ -+..+|. ..+.+++.+++++..+++.||+++-
T Consensus 251 N-------dm~~LEr~Lrd~I~~gqP~Thrp~kki~ii------vegiysmEg~iv~Lp~vvalkkkykayl~lDEAHSi 317 (519)
T KOG1357|consen 251 N-------DMQGLERLLRDAIVYGQPKTHRPWKKILIC------VEGIYSMEGTIVDLPEVVALKKKYKAYLYLDEAHSI 317 (519)
T ss_pred C-------CHHHHHHHHHHHHhcCCCCcCCcchheeee------eccceeccCeecccHHHHHhhccccEEEEeeccccc
Confidence 1 555666666542 1 22233332 3444433 3678999999999999999999875
Q ss_pred CCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhcc---ccCCChHHHH
Q psy14428 355 LTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGF---YSNPPIHGAR 431 (583)
Q Consensus 355 l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~---~~~~s~~~q~ 431 (583)
=..+.......-+.. .+..+-.|.+++|.|+||..| ||+.+ + +++++.++...... .+.++++.|+
T Consensus 318 GA~g~tGrgvce~~g-~d~~dvDImMGtftKSfga~G---Gyiag--s-----k~lid~lrt~s~~~~yat~~sppvaqq 386 (519)
T KOG1357|consen 318 GAMGATGRGVCEYFG-VDPEDVDIMMGTFTKSFGAAG---GYIAG--S-----KELIDYLRTPSPSALYATSLSPPVAQQ 386 (519)
T ss_pred cccCCCCcceeeccC-CCchhheeecceehhhccccc---ceecC--c-----HHHHhhhccCCCceeecccCChHHHHH
Confidence 444311000000000 133455788999999999888 89888 6 58888888643222 3456677777
Q ss_pred HHHHH
Q psy14428 432 IVTEI 436 (583)
Q Consensus 432 ~~~~~ 436 (583)
....+
T Consensus 387 ~~ssl 391 (519)
T KOG1357|consen 387 ILTSV 391 (519)
T ss_pred HHHHH
Confidence 66544
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.022 Score=66.76 Aligned_cols=190 Identities=12% Similarity=0.057 Sum_probs=113.4
Q ss_pred cCCccccCCCCCCCCChHHHHHHHHHhcc-CCCCCCCCC--CC----CHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 168 LGVGAYRGEDGKPYVLPSVKEAERRIYEK-NLDHEYANI--GG----DAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 168 l~~g~~~~~~~~p~~~~~v~~a~~~~~~~-~~~~~Y~~~--~G----~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
.+.|.++. .+|+.+.+.+.+..+- .....|.+. +| +.++++.||++.+ ++++|+.+ +.++
T Consensus 108 iG~G~y~~-----~~P~~v~~~i~~~~~~~TaytPYqaEisQG~lqal~~~Qt~ia~LtG------~~~anaSL--~d~a 174 (993)
T PLN02414 108 IGMGYYNT-----HVPPVILRNILENPGWYTQYTPYQAEIAQGRLESLLNYQTMITDLTG------LPMSNASL--LDEG 174 (993)
T ss_pred cCCCCCCc-----cCCHHHHHHHHhChHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHhC------CChhhEee--cCCh
Confidence 45566542 2456665655443331 122334432 45 4667778888774 56899999 9999
Q ss_pred hhHHHHHHHHHHHhCC-CCCEEEEcCCCChhhHHHHh----hcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEE
Q psy14428 241 SGSLRVGTAFLERFYP-GVKTVYFPTPTWNGHVRFCT----DSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFL 315 (583)
Q Consensus 241 ~~al~l~~~~l~~~~~-~gd~Vlv~~P~y~~~~~~~~----~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~ 315 (583)
+.+.+.+.... .+.+ ++|+|++.+-.|+.+...++ ..|++++.+++ +.. + . ..+....++
T Consensus 175 TAaaea~~~a~-~~~~g~~~~VlVs~~~hP~~~~v~~t~a~~~GieV~~v~~-~~~----~------~---~~~~v~~vl 239 (993)
T PLN02414 175 TAAAEAMAMCN-NILKGKKKKFLIASNCHPQTIDVCQTRADGLGLEVVVADE-KDF----D------Y---SSGDVCGVL 239 (993)
T ss_pred HHHHHHHHHHH-hcccCCCCEEEEcCccCHhHHHHHHHhhhhcCCEEEEecc-hhh----c------c---ccCceEEEE
Confidence 99999763322 2222 24789999999998876664 45999998887 321 1 0 011222333
Q ss_pred eCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccc---cccCc
Q psy14428 316 QTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNM---GLYGE 392 (583)
Q Consensus 316 i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~---~l~Gl 392 (583)
+.+| |-+|.+.+ +++|+++|+++|+++++ -+. .+..... .+ +...+--|+++|--|.. |.-|=
T Consensus 240 vq~P-~~~G~v~d---v~~I~~~ah~~GaL~iV-aad-~lal~~l----~~----pge~GADi~vgsgqKwg~P~G~GGP 305 (993)
T PLN02414 240 VQYP-ATDGEVLD---YAEFVKNAHANGVKVVM-ATD-LLALTML----KP----PGEWGADIVVGSAQRFGVPMGYGGP 305 (993)
T ss_pred EecC-CCCeEEcC---HHHHHHHHHHcCCEEEE-EEC-HHHhcCC----CC----HhhccCcEEEECCCccccCCCCCCC
Confidence 3222 34899865 66778899999999988 221 2222211 01 12234556778766654 22345
Q ss_pred cceEEEE
Q psy14428 393 RVGTFSV 399 (583)
Q Consensus 393 RiG~lv~ 399 (583)
+.|++.+
T Consensus 306 ~aGflav 312 (993)
T PLN02414 306 HAAFLAT 312 (993)
T ss_pred CeeEEEE
Confidence 5899998
|
|
| >KOG1383|consensus | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.019 Score=60.05 Aligned_cols=236 Identities=11% Similarity=0.040 Sum_probs=136.9
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCC-----CCEEEEcCCCChhhHHHHhhcCC
Q psy14428 206 GGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPG-----VKTVYFPTPTWNGHVRFCTDSRL 280 (583)
Q Consensus 206 ~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~-----gd~Vlv~~P~y~~~~~~~~~~G~ 280 (583)
++..++..++.+++..-++-+ ++ .+-.-|.|+++++.+.-.--+..... -..++++.-.-..+....+..++
T Consensus 116 p~~~~~e~~~Vnm~~~L~~~~--~~-~~g~~t~G~Ses~l~~~k~~~~~r~~~k~I~~p~iv~~~~v~~a~eK~a~yf~v 192 (491)
T KOG1383|consen 116 PVVRKLEAECVNMIANLFNAP--SD-SCGCGTVGGSESGLAAKKSYRNRRKAQKGIDKPNIVTPQNVHAAFEKAARYFEV 192 (491)
T ss_pred chhHHHHHHHHHHHHHHhcCC--cc-ccCccccccchHHHHHHHHHHHHHHhccCCCCccccchHHHHHHHHHHHhhEEE
Confidence 455666666666665544333 22 22223889999954432111111111 12444444445566667777889
Q ss_pred eEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHh-cCeEEEEeccCCCCCCC-
Q psy14428 281 NVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQ-RHLYPFFDMAYLGLTSG- 358 (583)
Q Consensus 281 ~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~-~~i~iI~De~Y~~l~~~- 358 (583)
++..+|+ ++.++.+|+..+.+.+ .+++++++..-|+-|+| +.|..++|.+++.+ ++++|-.|-+-+.|.-.
T Consensus 193 ~l~~V~~-~~~~~~~D~~k~~~~i---~eNti~lv~~~~~~p~G---~~e~ve~l~~l~~e~w~ipiHvDa~~GgFi~p~ 265 (491)
T KOG1383|consen 193 ELREVPL-DEGDYRVDPGKVVRMI---DENTIMLVGSLPNFPTG---EIEDVEKLADLLLEIWDIPIHVDACLGGFINPA 265 (491)
T ss_pred EEEeeec-cccceEecHHHHHHHh---ccceEEEEEEcCCCCcc---chhhHHHHHHHHHHHhCCceeecccCccccccc
Confidence 9999999 7788999999999888 78899999999999999 45677777888888 99999999998888752
Q ss_pred CCCCchHHHHHHHHh-cCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHH-------Hhcccc-----CC
Q psy14428 359 DFDKDAFSLRYFAKE-VGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKIL-------IRGFYS-----NP 425 (583)
Q Consensus 359 ~~~~~~~~~~~~~~~-~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~-------~~~~~~-----~~ 425 (583)
+. .. ...+ +- ...|-.+.--+--||+.=--+||++- .+++ .+-.++.-. ...... +.
T Consensus 266 ~~-~~---~~~f-dFr~p~V~Sisa~~HKYGl~~~G~~~vl~--r~k~---~~~~q~~~~~~w~Gg~y~s~TlngSR~g~ 335 (491)
T KOG1383|consen 266 GY-LN---EEEF-DFRVPGVTSISADGHKYGLAPAGSSWVLY--RNKE---LLPHQLFFHTDWLGGIYASPTLNGSRPGS 335 (491)
T ss_pred cc-cC---cccc-ccCCCCceeEeeccceeeeeecCcEEEEE--cccc---cccceEEEeccccCccccCcccccCCccc
Confidence 10 00 0011 11 11222222222114443334588887 4432 222222211 111222 23
Q ss_pred ChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHh
Q psy14428 426 PIHGARIVTEILSDPKLKAQCDETERIMSQLKILIR 461 (583)
Q Consensus 426 s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r 461 (583)
....|++..--+..+.|.+..+++.+....+++-++
T Consensus 336 ~va~~wa~~~~lG~eGY~~~~~~ive~~~~l~egie 371 (491)
T KOG1383|consen 336 QVAAQWAALMSLGEEGYRENTQNIVETARKLREGIE 371 (491)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344566665566677777766666655555544443
|
|
| >PTZ00376 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0037 Score=66.85 Aligned_cols=71 Identities=54% Similarity=1.011 Sum_probs=60.2
Q ss_pred eecccchhHHHHHHHHHHhhcCCCeEEecCCCCcCchhhhhhcCCCceeeeeccCCCCcccchhhhHHHHH
Q psy14428 4 VQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIK 74 (583)
Q Consensus 4 ~q~~~~tg~~~~~~~~~~~~~~~~~~~~~~~p~w~n~~~~~~~~~~~~~~y~~~~~~~~~~d~~~~~~~~~ 74 (583)
++|.+|+||+.+...++..+.....+|.+++|+|.++..+++..|.++..|+.+++..-++|++.+.+.++
T Consensus 101 ~~t~G~~~al~~~~~~l~~~~~~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~l~~~~~~~~d~~~l~~~~~ 171 (404)
T PTZ00376 101 VQALSGTGALRLGFEFLKRFLPAGTTVYVSNPTWPNHVNIFKSAGLNVKEYRYYDPKTKGLDFDGMLEDLR 171 (404)
T ss_pred eeccCcchHHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHcCCceeeccccCcccCCcCHHHHHHHHH
Confidence 48999999999998777655433378999999999999999999999999999877678999998877664
|
|
| >COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.039 Score=57.38 Aligned_cols=141 Identities=11% Similarity=0.128 Sum_probs=101.0
Q ss_pred CCCCCC---CCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhC-----CCCCEEEEcCCCChh
Q psy14428 199 DHEYAN---IGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFY-----PGVKTVYFPTPTWNG 270 (583)
Q Consensus 199 ~~~Y~~---~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~-----~~gd~Vlv~~P~y~~ 270 (583)
.+-|.| .+|+.++...+.+|+.+--|. |.|.+=+.+|+++-.. ...+++... ...+.|+||+-....
T Consensus 95 iHP~~pe~~vqG~l~li~~Lq~~L~~ITG~----DavsLQP~AGAqGE~a-Gll~Ir~YHe~rG~~~R~~~LIP~SAHGT 169 (496)
T COG1003 95 IHPFQPEEQVQGYLELIYELQEWLKEITGM----DAVSLQPNAGAQGEYA-GLLAIRAYHESRGEGHRNICLIPDSAHGT 169 (496)
T ss_pred cCCCCChHHHHHHHHHHHHHHHHHHHhcCC----ceeeccCCCCcchhhH-HHHHHHHHHHHcCCCcCcEEEeeccccCC
Confidence 344544 578889999999999875443 3444423556655433 222333321 124689999988888
Q ss_pred hHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEec
Q psy14428 271 HVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDM 350 (583)
Q Consensus 271 ~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De 350 (583)
-...+.+.|.+||.|+. ++ +..+|+++|++++ .+++.++.++||+ |-. +=.+.+++|+++..++|..+..|-
T Consensus 170 NPASAam~G~~VV~V~~-~~-~G~VDlddLk~k~---~~~~AalMiTnPs--T~G-vFE~~I~ei~~ivH~~Gg~vY~DG 241 (496)
T COG1003 170 NPASAAMAGFKVVVVKC-DE-NGNVDLDDLRAKA---EDNLAALMITNPS--TLG-VFEEDIREICEIVHEAGGQVYYDG 241 (496)
T ss_pred ChhhHhhcCceEEEEec-CC-CCCccHHHHHHHh---ccceeEEEeccCc--ccc-cchhhHHHHHHHHHHcCCEEEecC
Confidence 88889999999999999 54 4689999999988 4677788887775 323 346778899999999999998888
Q ss_pred cC
Q psy14428 351 AY 352 (583)
Q Consensus 351 ~Y 352 (583)
+-
T Consensus 242 AN 243 (496)
T COG1003 242 AN 243 (496)
T ss_pred cc
Confidence 74
|
|
| >PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.036 Score=57.56 Aligned_cols=170 Identities=15% Similarity=0.084 Sum_probs=93.5
Q ss_pred CCeEEEecCCchhH-HHHHHHHHHHhCCCCCEEEEcCCC-ChhhHHHHhhcCCeEEEEecccC-CCCCCChhhHHHHHHc
Q psy14428 230 NRLAIVQGISGSGS-LRVGTAFLERFYPGVKTVYFPTPT-WNGHVRFCTDSRLNVGAYRYFDN-KTNGLDFAGMMEDIKA 306 (583)
Q Consensus 230 ~~I~i~~t~G~~~a-l~l~~~~l~~~~~~gd~Vlv~~P~-y~~~~~~~~~~G~~~~~v~~~d~-~~~g~d~~~l~~~l~~ 306 (583)
...++ ++.+++- +.+....++ -.+.++.|+.+.-. |..+ ..+..+|.+++.||.... +.-..|.+.+++.+++
T Consensus 75 ~~~~~--vP~atgm~l~l~l~~l~-~r~~a~~Viw~ridqkSc~-kai~~AGl~~~vV~~~~~~d~l~td~~~ie~~i~~ 150 (389)
T PF05889_consen 75 KSCFV--VPMATGMSLTLCLLALR-MRPKAKYVIWPRIDQKSCF-KAIERAGLEPVVVENVLEGDELITDLEAIEAKIEE 150 (389)
T ss_dssp CEEEE--ESS-HHHHHHHHHHHHH-HHCT--EEEEEEEETHHHH-HHHHHTT-EEEEE-EEEETTEEEEHHHHHHHHHHH
T ss_pred cceEE--EecccccHHHHHHHHHh-cccCCceEEEeeccccchH-HHHHhcCCeEEEeeccCCCCeeeccHHHHHHHHHH
Confidence 34556 5556543 333212222 23558888887765 5444 456678999998885322 2223367778888876
Q ss_pred CCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcE-EEEecCcc
Q psy14428 307 MPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQL-CLAQSFSK 385 (583)
Q Consensus 307 ~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~v-i~i~S~SK 385 (583)
..+...+.++++..-=.+. -.|+..+|+++|+++|++.|.-.+|+-=... -...+.... ..+++ +++.|.-|
T Consensus 151 ~G~~~iLcvltttscfapr--~~D~i~~IakiC~~~~IPhlvNnAYgvQ~~~----~~~~i~~a~-~~GRvda~vqS~dk 223 (389)
T PF05889_consen 151 LGADNILCVLTTTSCFAPR--LPDDIEEIAKICKEYDIPHLVNNAYGVQSSK----CMHLIQQAW-RVGRVDAFVQSTDK 223 (389)
T ss_dssp HCGGGEEEEEEESSTTTTB------HHHHHHHHHHHT--EEEEGTTTTT-HH----HHHHHHHHH-HHSTCSEEEEEHHH
T ss_pred hCCCCeEEEEEecCccCCC--CCccHHHHHHHHHHcCCceEEccchhhhHHH----HHHHHHHHH-hcCCcceeeeecCC
Confidence 6556566666544332332 3457999999999999999999999542110 011122211 23444 78999999
Q ss_pred cccccCccceEEEEEcCCchhHHHHHHHHHHH
Q psy14428 386 NMGLYGERVGTFSVLTPTSDETERIMSQLKIL 417 (583)
Q Consensus 386 ~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~ 417 (583)
+| |-+.--+-+.+ ++ +..+..+.+.
T Consensus 224 NF-~VPvGgai~As--~~----~~~i~~vs~~ 248 (389)
T PF05889_consen 224 NF-MVPVGGAIMAS--FD----PSGILAVSKE 248 (389)
T ss_dssp HH-CEESSHEEEEE--SS----HHHHHHHHHT
T ss_pred CE-EecCCCcEEEe--cC----HHHHHHHHHH
Confidence 99 45544334444 54 5788887764
|
Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A. |
| >PRK12462 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.31 Score=51.04 Aligned_cols=208 Identities=12% Similarity=0.046 Sum_probs=107.3
Q ss_pred HHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEE--EcCCCChh-hHHHHhhcCCeEEEEeccc
Q psy14428 213 KLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVY--FPTPTWNG-HVRFCTDSRLNVGAYRYFD 289 (583)
Q Consensus 213 ~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vl--v~~P~y~~-~~~~~~~~G~~~~~v~~~d 289 (583)
+.+.+.+++-.+++ +..+|+++ +.|++++++.+ ...+..+||+++ +.+=.|.. +...++.+| ++..+....
T Consensus 52 ~~~~~~Lr~Ll~~P-~~y~Vlfl-~GggT~~~ea~---~~Nll~~g~~~~~~~~tG~fg~r~~~ea~~~g-~v~~~~~~~ 125 (364)
T PRK12462 52 AQAEADLRDLLGIP-DEYGVVFL-QGGSSLQFSMI---PMNFSRPGAAAPEYVTTGYWSRKAIGEASRVA-AMRVVWDGA 125 (364)
T ss_pred HHHHHHHHHHhCCC-CCCeEEEE-eccHHHHHHHH---HHHcCCCCCcEEEEEeCCHHHHHHHHHHHhcC-CceEecCcC
Confidence 33334444433332 12366662 45578888875 344555588654 44333543 344556666 444332100
Q ss_pred CCC--CCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHH
Q psy14428 290 NKT--NGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSL 367 (583)
Q Consensus 290 ~~~--~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~ 367 (583)
..+ ..++++.+ + ..+...++.++.-.-.||+.++ ++.+.++.++|+|-+=.-+... ..+
T Consensus 126 ~~~~~~~p~~~~~----~-~~~d~~~v~~t~NETstGv~~~--------~~~~~~~~llvvD~sS~~~s~p------id~ 186 (364)
T PRK12462 126 ASGYRTLPSLAEL----D-WDARAPFRHYVSNETVEGLQFP--------DAAGLPDSPLIADMSSDFMSRP------FDV 186 (364)
T ss_pred CCCCCcCCCHHHh----c-cCCCCcEEEEccCCCCceEecC--------cccccCCCeEEEEcCchhhCCC------CCh
Confidence 111 12333333 1 1345666777776778898886 2223368999999985443321 112
Q ss_pred HHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHH------------HhccccCCChHHHHHHHH
Q psy14428 368 RYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKIL------------IRGFYSNPPIHGARIVTE 435 (583)
Q Consensus 368 ~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~------------~~~~~~~~s~~~q~~~~~ 435 (583)
+.. -++..|.-|++|-||+ +.+++ . ++++++.... ...++..+|...-+++..
T Consensus 187 ----~~~--dvi~agsQKnlgP~Gl--tvviv--s-----~~al~~~~~~~p~~ldy~~~~~~~s~~nTPpv~~iy~l~~ 251 (364)
T PRK12462 187 ----EAY--GMVYAHAQKNLGPAGV--TVAII--R-----RALLERVPDTLPPMLDFRTHVEHRSNYNTPPVFAIYVMAL 251 (364)
T ss_pred ----HHc--cEEEeeccccCCCCce--EEEEE--C-----HHHHhhccccCCchhhHHHHHhcCCCCCCchHHHHHHHHH
Confidence 222 3556677899998886 56666 4 3555544331 122344555555555544
Q ss_pred H---h-CC-hhhhhhhhhHHHHHHHHHHHH
Q psy14428 436 I---L-SD-PKLKAQCDETERIMSQLKILI 460 (583)
Q Consensus 436 ~---l-~~-~~~~~~~~~~~~~~~~l~~~~ 460 (583)
. + ++ +.++...++.++..+.+...+
T Consensus 252 ~l~~i~~e~GGl~~~~~r~~~ka~~ly~~i 281 (364)
T PRK12462 252 VLRWIRDEIGGVHAMRDINARKAAMLYATL 281 (364)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHHH
Confidence 4 2 34 356555555555444444444
|
|
| >COG3033 TnaA Tryptophanase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.045 Score=55.46 Aligned_cols=142 Identities=11% Similarity=0.051 Sum_probs=98.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHh--CCCCCEEEEcCCC-ChhhHHHH
Q psy14428 199 DHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERF--YPGVKTVYFPTPT-WNGHVRFC 275 (583)
Q Consensus 199 ~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~--~~~gd~Vlv~~P~-y~~~~~~~ 275 (583)
...|..+.++..|.+++.+.++- +.++. |.-|.+|-.+...++... ..||....+++-. |.......
T Consensus 72 DEAYagsrs~~~L~~avkdifGf--------q~~iP--thQGRgAE~Il~~i~ik~~~~~pg~~~~~~sN~~FdTTr~h~ 141 (471)
T COG3033 72 DEAYAGSRSYYALADAVKDIFGF--------QYTIP--THQGRGAENILIPILIKKGEQEPGSKMVAFSNYHFDTTRGHI 141 (471)
T ss_pred chhhcccccHHHHHHHHHHhcCc--------eeeee--ccCCccHHHHHHHHHhhhccccCCccccccccceecchhHHH
Confidence 45699999999999999999863 23333 777777776643332211 1134333444333 55566677
Q ss_pred hhcCCeEEEEecccCC---------CCCCChhhHHHHHHcCCC--CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCe
Q psy14428 276 TDSRLNVGAYRYFDNK---------TNGLDFAGMMEDIKAMPE--RSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHL 344 (583)
Q Consensus 276 ~~~G~~~~~v~~~d~~---------~~g~d~~~l~~~l~~~~~--~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i 344 (583)
+..|..++.++. ++. ...+|++.+++.+++... .+.+++..+.|---|.-.|.+.++++.++|++|++
T Consensus 142 ~~ng~~~~n~~~-~ea~d~~~~~pFKGd~D~~kLe~lidevG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~i 220 (471)
T COG3033 142 QINGATPRNVYV-DEAFDTEVKYPFKGNFDLEKLERLIDEVGADNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDI 220 (471)
T ss_pred HhcCCccccccc-cccccccccCCCCCccCHHHHHHHHHHhCcccCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCC
Confidence 888988887776 331 145889999998877532 23334444555566899999999999999999999
Q ss_pred EEEEecc
Q psy14428 345 YPFFDMA 351 (583)
Q Consensus 345 ~iI~De~ 351 (583)
.++.|.+
T Consensus 221 pvv~Da~ 227 (471)
T COG3033 221 PVVMDAA 227 (471)
T ss_pred cEEeehh
Confidence 9999987
|
|
| >PRK09257 aromatic amino acid aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.016 Score=61.74 Aligned_cols=70 Identities=41% Similarity=0.818 Sum_probs=59.5
Q ss_pred eecccchhHHHHHHHHHHhhcCCCeEEecCCCCcCchhhhhhcCCCceeeeeccCCCCcccchhhhHHHHH
Q psy14428 4 VQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIK 74 (583)
Q Consensus 4 ~q~~~~tg~~~~~~~~~~~~~~~~~~~~~~~p~w~n~~~~~~~~~~~~~~y~~~~~~~~~~d~~~~~~~~~ 74 (583)
+.|-++++||.++..++...-++ .+|.+++|+|.++..+++..|.++..|+..++..-++|++.+.+.++
T Consensus 98 ~iT~Ga~~al~~~~~~l~~~~pG-d~Vlv~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~ 167 (396)
T PRK09257 98 VQTPGGTGALRVGADFLKRAFPD-AKVWVSDPTWPNHRAIFEAAGLEVKTYPYYDAATKGLDFDAMLADLS 167 (396)
T ss_pred EecCCccHHHHHHHHHHHHhCCC-CeEEECCCCcccHHHHHHHcCCcEEEEeccccccCccCHHHHHHHHH
Confidence 67888999999999877654466 68999999999999999999999999998766567899998766554
|
|
| >PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1 | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.15 Score=54.20 Aligned_cols=189 Identities=13% Similarity=0.165 Sum_probs=96.2
Q ss_pred ccCCccccCCCCCCCCChHHHHHHHHHhccC-CCCCCCC-----CCCCH----HHHHHHHHHHhCCCCCCCCCCCeEEEe
Q psy14428 167 NLGVGAYRGEDGKPYVLPSVKEAERRIYEKN-LDHEYAN-----IGGDA----KFCKLAAQLAYGEDFPAFKDNRLAIVQ 236 (583)
Q Consensus 167 ~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~-~~~~Y~~-----~~G~~----~Lr~aia~~~~~~~g~~~~~~~I~i~~ 236 (583)
-++.|.++. ..|+.+.+. +.+++ -...|+| ++|.. ++...|++.. |.++ -|.-+
T Consensus 69 fiG~G~y~~-----~~P~~i~~~---i~~~~ef~TaYtPYQpEisQG~Lq~lfe~Qs~i~eLT----Gmdv--aNaSl-- 132 (429)
T PF02347_consen 69 FIGAGSYTH-----YVPAVIDRN---ILSRPEFYTAYTPYQPEISQGRLQALFEYQSMICELT----GMDV--ANASL-- 132 (429)
T ss_dssp ---CTTT----------HHHHH----HHCCHHCCCS-STTSGGGBHHHHHHHHHHHHHHHHHH----TSSE--E-SEB--
T ss_pred cccccccCc-----eeChhhcCc---cccChhhhccCCCCCcHHHHHHHHHHHHHHHHHHHhh----CCCc--cCCCC--
Confidence 345666642 244555542 23332 1345666 45654 4444455544 3432 23334
Q ss_pred cCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHH----hhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcE
Q psy14428 237 GISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFC----TDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSI 312 (583)
Q Consensus 237 t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~----~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~ 312 (583)
-.|++.+-+.+....+.-....++|+++.-.++.+..++ +..|++++.++. ++. ...| .+++.
T Consensus 133 yd~atA~aEa~~ma~r~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~iv~~~~-~~~-~~~d-----------~~~~a 199 (429)
T PF02347_consen 133 YDGATAAAEAMLMAVRATKRKRNKVLVPESLHPQTRAVLRTYAAPLGIEIVEVPL-DED-GTTD-----------DDDTA 199 (429)
T ss_dssp SSCCHHHHHHHHHHHHHHTT---EEEEETTS-CHHHHHHHHHCCHCCEEEEEE-B-BTT-CSB------------STTEE
T ss_pred CChhHHHHHHHHHHHHhcccCCcEEEEcCCcChhhHHHHHHhhhhCCeEEEEecc-ccc-CCcc-----------ccCeE
Confidence 557776666553334443333469999999999888754 446899999998 442 2222 46778
Q ss_pred EEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCccccccc--
Q psy14428 313 LFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLY-- 390 (583)
Q Consensus 313 ~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~-- 390 (583)
.+++.+||. .|.+-+ .++|.+++.+++.+++. .-..+.... +++ +.+.+--|++++ .|+||+|
T Consensus 200 ~v~vq~Pn~-~G~~ed---~~~i~~~~h~~gal~~~--~ad~~aL~~-------l~~-Pge~GADI~vg~-~Q~fg~p~~ 264 (429)
T PF02347_consen 200 AVMVQNPNT-FGVFED---IKEIADIAHAAGALVIV--GADPNALGG-------LKS-PGEYGADIVVGE-HQTFGIPMG 264 (429)
T ss_dssp EEEEESS-T-TSB--T---HHHHHHHHHHTT-EEEE--CGGCCGCCT-------C---GGGGT-SEEEEC-CTTTT---C
T ss_pred EEEeecCCC-CceEee---HHHHHHHHHHcCCEEEE--ecCHHHHhC-------cCC-hhhcCccEEeeC-CCCCcccCC
Confidence 888888873 566554 88889999999988776 222232222 111 222333344776 7877654
Q ss_pred --CccceEEEE
Q psy14428 391 --GERVGTFSV 399 (583)
Q Consensus 391 --GlRiG~lv~ 399 (583)
|=-.|++.+
T Consensus 265 ~GGP~~G~~a~ 275 (429)
T PF02347_consen 265 FGGPGAGFFAV 275 (429)
T ss_dssp CC-S--EEEEE
T ss_pred CCCCCeeeEEE
Confidence 556788888
|
4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A. |
| >KOG3843|consensus | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.25 Score=48.06 Aligned_cols=210 Identities=16% Similarity=0.138 Sum_probs=113.0
Q ss_pred CCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEE-ecccCCCCCCChhhHHH
Q psy14428 224 FPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAY-RYFDNKTNGLDFAGMME 302 (583)
Q Consensus 224 g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v-~~~d~~~~g~d~~~l~~ 302 (583)
|++.-.+.+++ +.+-| -++.+....++.-.|+..-|+-+.-.-......+-.+|.+++-+ ++.|.+.-.-|++..++
T Consensus 71 glhav~nc~vv-pl~tg-mslslc~~s~r~krpkakyiiw~ridqks~~ksi~~agfepiiie~i~d~d~l~tdleav~~ 148 (432)
T KOG3843|consen 71 GLHAVANCFVV-PLATG-MSLSLCFLSLRHKRPKAKYIIWLRIDQKSCFKSIIHAGFEPIIIENILDGDELITDLEAVEA 148 (432)
T ss_pred hhhhhhceeEE-ecccc-ccHHHHHHHHhhcCCcccEEEEEecchHHHHHHHHhcCCCceeeeccccchHHHHhHHHHHH
Confidence 44433444443 23222 24445433455555544555544333222333344578877665 33333333447888888
Q ss_pred HHHcCCCCcEEEEeCC--CCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcE-EE
Q psy14428 303 DIKAMPERSILFLQTS--SHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQL-CL 379 (583)
Q Consensus 303 ~l~~~~~~~~~i~i~~--p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~v-i~ 379 (583)
.+++..+...+.+.++ +--| -+++.+++|..+|..|+++-|+..+|+--... -..-+.. ..+-+++ -+
T Consensus 149 ~iee~g~dcilci~sttscfap----r~pd~leaiaaica~~diphivnnayglqsee----~i~~iaa-~~~~grida~ 219 (432)
T KOG3843|consen 149 IIEELGEDCILCIHSTTSCFAP----RSPDNLEAIAAICAAHDIPHIVNNAYGLQSEE----CIHKIAA-AAECGRIDAF 219 (432)
T ss_pred HHHHhCCceEEEEeecccccCC----CCCchHHHHHHHHHccCchhhhccccccchHH----HHHHHHH-HhhhccHHHH
Confidence 8877777666655432 2223 36789999999999999999999999643211 1111222 1222332 46
Q ss_pred EecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHH
Q psy14428 380 AQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETER 451 (583)
Q Consensus 380 i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~ 451 (583)
+.|+-|+|-+|= -|.+++.-. +.+|+.+.+.-....+.+|++--.+..-.+....+.+...+.+.
T Consensus 220 vqsldknf~vpv--ggaiia~fk-----~n~iq~iak~ypgrasa~ps~dllitll~~gqn~f~e~~~eqke 284 (432)
T KOG3843|consen 220 VQSLDKNFMVPV--GGAIIAAFK-----DNFIQEIAKMYPGRASASPSLDLLITLLSLGQNAFKELFGEQKE 284 (432)
T ss_pred HHHhhhcceeec--chhHhhHhH-----HHHHHHHHHhCCCccccCccHHHHHHHHHhchhHHHHHHHHHHH
Confidence 789999996542 144444111 35677766544333444555544444444555555555544443
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=94.81 E-value=1.2 Score=52.10 Aligned_cols=147 Identities=10% Similarity=0.080 Sum_probs=87.9
Q ss_pred cCCccccCCCCCCCCChHHHHHHHHHhccCC-CCCCCCC-----CCC----HHHHHHHHHHHhCCCCCCCCCCCeEEEec
Q psy14428 168 LGVGAYRGEDGKPYVLPSVKEAERRIYEKNL-DHEYANI-----GGD----AKFCKLAAQLAYGEDFPAFKDNRLAIVQG 237 (583)
Q Consensus 168 l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~-~~~Y~~~-----~G~----~~Lr~aia~~~~~~~g~~~~~~~I~i~~t 237 (583)
++.|.++. ..|+.+.+.+.+ ++. ...|+|. ||. -++.+.+++..+ . +..|..+ .
T Consensus 69 ig~G~y~~-----~~p~~i~r~v~~---~p~~~TaytPyQ~EisQG~Le~l~e~Qt~i~eLtG----m--~~aNaSl--~ 132 (939)
T TIGR00461 69 IGMGYYGT-----ILPPVIQRNLLE---NPGWYTAYTPYQPEISQGRLEALLNFQTVVSDLTG----L--PVANASL--L 132 (939)
T ss_pred CCCCcCCC-----cCChHHHHHHHh---CchhhhcCCCCChhhhhHHHHHHHHHHHHHHHHHC----C--Chhhhhc--c
Confidence 46666642 244566544332 321 3456654 454 345555555553 3 3445555 6
Q ss_pred CCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHh----hcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEE
Q psy14428 238 ISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCT----DSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSIL 313 (583)
Q Consensus 238 ~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~----~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~ 313 (583)
.+++.+.+.+....+.-..++++|+|++-.++.+..+++ ..|++++.+++ +.+++.+ .+..
T Consensus 133 d~atA~aEa~~~a~~~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~v~~~~~----------~~l~~~~-----~~~~ 197 (939)
T TIGR00461 133 DEGTAAAEAMALSFNVSKKKANKFFVAKDLHPQTKSVLHTRAKPFGIEVIVVDC----------SDIKKAV-----DVFG 197 (939)
T ss_pred chhhHHHHHHHHHHHhhcCCCCEEEECCCCCcchHHHHHHHHHhcCcEEEEEcH----------HHHhhcC-----CEEE
Confidence 677777775422222212234899999999988876655 67888887754 2232222 3556
Q ss_pred EEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEe
Q psy14428 314 FLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFD 349 (583)
Q Consensus 314 i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~D 349 (583)
+++.+|+ =+|.+. ++++|++++.+++.+++.+
T Consensus 198 v~~q~Pn-~~G~ie---d~~~i~~~~h~~gal~~~~ 229 (939)
T TIGR00461 198 CLLQYPA-TDGSIL---DYKQLIDALHSHKSLVSVA 229 (939)
T ss_pred EEEECCC-CCeEEe---cHHHHHHHHHHcCCEEEEE
Confidence 6666765 468775 5888899999999988874
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.30 E-value=8.2 Score=40.62 Aligned_cols=192 Identities=16% Similarity=0.176 Sum_probs=109.4
Q ss_pred ccCCccccCCCCCCCCChHHHHHHHHHhccC-CCCCCCCC-----CCC----HHHHHHHHHHHhCCCCCCCCCCCeEEEe
Q psy14428 167 NLGVGAYRGEDGKPYVLPSVKEAERRIYEKN-LDHEYANI-----GGD----AKFCKLAAQLAYGEDFPAFKDNRLAIVQ 236 (583)
Q Consensus 167 ~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~-~~~~Y~~~-----~G~----~~Lr~aia~~~~~~~g~~~~~~~I~i~~ 236 (583)
-++.|.++.- .|+.+.+. +++++ -...|+|. +|. -++..-++++. |.++.....
T Consensus 79 fiG~GyY~~~-----~P~vI~rn---ile~pewyTaYTPYQpEISQGrLqaLfefQtlv~dLT----Gm~VANASm---- 142 (450)
T COG0403 79 FIGAGYYDTY-----TPPVILRN---ILENPEWYTAYTPYQPEISQGRLEALFEFQTLVADLT----GLDVANASM---- 142 (450)
T ss_pred hccCcccCCc-----CcHHHHHH---hhcCccccccCCCCchhhhhHHHHHHHHHHHHHHHHh----CCCcccchh----
Confidence 3577877532 45555533 33342 23456664 343 23344444443 455444333
Q ss_pred cCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhc----CCeEEEEecccCCCCCCChhhHHHHHHcCCCCcE
Q psy14428 237 GISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDS----RLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSI 312 (583)
Q Consensus 237 t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~----G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~ 312 (583)
--|++.+-+.+....+.-..+.++++|+.-.++.+..+++.. |.+++.++. + |.+.+++. . ...+.
T Consensus 143 ~DeaTAaAEAm~ma~r~~k~k~~~~~V~~~vhpqt~~Vl~Tra~~~g~~i~~~~~-~------d~~~l~~~-~--~~~~~ 212 (450)
T COG0403 143 LDEATAAAEAMLMAKRVTKKKRNKFLVPKDVHPQTLDVLRTRAEGLGIEIEVVDA-D------DLDDLESA-D--DGDVF 212 (450)
T ss_pred hhhHHHHHHHHHHHHHhhcCcCceEEecCCCCHHHHHHHHhhcccCceEEEEecc-c------hhhhhhhc-c--ccCeE
Confidence 345666655543233333333589999999999998887653 567776655 2 55555554 1 33556
Q ss_pred EEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHH--HHhcCcEEEEecCc---ccc
Q psy14428 313 LFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYF--AKEVGQLCLAQSFS---KNM 387 (583)
Q Consensus 313 ~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~--~~~~~~vi~i~S~S---K~~ 387 (583)
.+++-+|+ -.| ...+++++|.+.+++++.++++=- ++.++--+ +.+.+--|+++|-. =-+
T Consensus 213 gv~vQyP~-~~G--~~~~d~~~l~~~~h~~~al~~v~a------------DplaL~LL~pPGe~GADIvvG~~QrfGvPm 277 (450)
T COG0403 213 GVLVQYPN-TFG--IVEEDLRALIEAAHSAGALVIVAA------------DPLALGLLKPPGEFGADIVVGSAQRFGVPM 277 (450)
T ss_pred EEEEecCC-CCC--ccchhHHHHHHHHhhcCCEEEEEe------------chhHhhccCCccccCCceEEecCcccCCCc
Confidence 66665554 334 455679999999999987666411 12222111 23445667888743 334
Q ss_pred cccCccceEEEE
Q psy14428 388 GLYGERVGTFSV 399 (583)
Q Consensus 388 ~l~GlRiG~lv~ 399 (583)
|.-|=.+||..+
T Consensus 278 gfGGPhag~fA~ 289 (450)
T COG0403 278 GFGGPHAGYFAV 289 (450)
T ss_pred CCCCcceeeeeE
Confidence 445788899988
|
|
| >PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.11 Score=54.50 Aligned_cols=78 Identities=18% Similarity=0.117 Sum_probs=63.9
Q ss_pred ceecccchhHHHHHHHHHHhhcCCCeEEecCCCCcCchhhhhhcCCCceeeeeccCCCCcccchhhhHHHHHhhhhhcc
Q psy14428 3 IVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKLAIVQGI 81 (583)
Q Consensus 3 ~~q~~~~tg~~~~~~~~~~~~~~~~~~~~~~~p~w~n~~~~~~~~~~~~~~y~~~~~~~~~~d~~~~~~~~~~a~~q~~ 81 (583)
.|.+-+|++++.....++.+.-++ .+|++++|+|.++..+++..|.++..|+........+|++.+.+.++..+.+.+
T Consensus 70 ~i~~~~G~~~~~~~~~~~~~~~~~-~~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~ 147 (363)
T PF00155_consen 70 NILVTSGAQAALFLLLRLLKINPG-DTVLVPDPCYPSYIEAARLLGAEVIPVPLDSENDFHLDPEALEEALDELPSKGP 147 (363)
T ss_dssp GEEEESHHHHHHHHHHHHHHSSTT-SEEEEEESSSTHHHHHHHHTTSEEEEEEEEETTTTEETHHHHHHHHHTSHTTTE
T ss_pred EEEEecccccchhhhhhccccccc-ccceecCCccccccccccccCceeeecccccccccccccccccccccccccccc
Confidence 466678888777766666532244 689999999999999999999999999988778889999999999988765555
|
On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A .... |
| >KOG1403|consensus | Back alignment and domain information |
|---|
Probab=93.64 E-value=1.3 Score=44.04 Aligned_cols=188 Identities=12% Similarity=0.040 Sum_probs=102.6
Q ss_pred CeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHH-hh------cCC---e--EEEE-ecccC-------
Q psy14428 231 RLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFC-TD------SRL---N--VGAY-RYFDN------- 290 (583)
Q Consensus 231 ~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~-~~------~G~---~--~~~v-~~~d~------- 290 (583)
-.++ ++.|++|-+++.++.+.+..+.|.| +.+-.|....... +. .|. + .+.+ |..|-
T Consensus 104 vc~F--~NSGSEANDLALRLAR~ftkhqDvI-tldHAYHGHl~s~mE~SPYKF~~g~~v~kpd~VHVAPcPDvyrGK~r~ 180 (452)
T KOG1403|consen 104 VCFF--VNSGSEANDLALRLARNFTKHQDVI-TLDHAYHGHLQSVMEVSPYKFNQGGGVAKPDYVHVAPCPDVYRGKFRD 180 (452)
T ss_pred EEEE--ecCCchhhHHHHHHHHhhcccCceE-EEechhccceeeeeeccceeccCCCCcCCCceeEecCCcccccccccc
Confidence 3455 8889999999888888888866654 4455555443221 10 011 1 1211 22110
Q ss_pred ---CCCC---CChhhHHHHHH---cCCCCcEEEEeCCCCCCCCCCCCH-HHHHHHHHHHHhcCeEEEEeccCCCCCCCCC
Q psy14428 291 ---KTNG---LDFAGMMEDIK---AMPERSILFLQTSSHNPTGVDLSE-DQWRQLAVVVKQRHLYPFFDMAYLGLTSGDF 360 (583)
Q Consensus 291 ---~~~g---~d~~~l~~~l~---~~~~~~~~i~i~~p~NPTG~~~s~-~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~ 360 (583)
++-. .--+.+++.++ ....+..+++--+-+.=-|.++++ .-.+++++..+.++-+.|.||+--+|..-+
T Consensus 181 ~~~~~a~~~~~Yad~vk~I~~d~~~~g~gvAAfiAEslQSCGGQiiPPagYFq~Va~~Vr~aGGv~IaDEVQvGFGRvG- 259 (452)
T KOG1403|consen 181 KMYPDADMGALYADPVKEICQDQLAKGQGVAAFIAESLQSCGGQIIPPAGYFQAVADAVRSAGGVCIADEVQVGFGRVG- 259 (452)
T ss_pred ccCCcccchhhhhhHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccCchhHHHHHHHHHhcCCCeEEeehhhhcccccc-
Confidence 0000 00122222222 122333333333333334555544 457889999999999999999988887655
Q ss_pred CCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHH--HhccccCCChHHHHHHHH
Q psy14428 361 DKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKIL--IRGFYSNPPIHGARIVTE 435 (583)
Q Consensus 361 ~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~--~~~~~~~~s~~~q~~~~~ 435 (583)
...+++..+ +-+=-|-++.|.+| .|.-++.++. . +++.+++... .-...++-++.+-.+...
T Consensus 260 -~hyWafq~y----~fiPDIVtmgKpmG-NGhPVa~Vat--t-----keIA~Af~atgv~YFNTyGGnPVsCAv~la 323 (452)
T KOG1403|consen 260 -SHYWAFQTY----NFIPDIVTMGKPMG-NGHPVAAVAT--T-----KEIAQAFHATGVEYFNTYGGNPVSCAVGLA 323 (452)
T ss_pred -hhhhhhhhh----ccccchheecccCC-CCCeeeEEec--c-----HHHHHHhccccceehhccCCCchhHHHHHH
Confidence 334444332 22223446789999 9999999988 4 4677777652 222234445544443333
|
|
| >KOG1402|consensus | Back alignment and domain information |
|---|
Probab=93.12 E-value=0.85 Score=46.05 Aligned_cols=127 Identities=13% Similarity=0.122 Sum_probs=81.5
Q ss_pred ChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCC-HHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhc
Q psy14428 296 DFAGMMEDIKAMPERSILFLQTSSHNPTGVDLS-EDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEV 374 (583)
Q Consensus 296 d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s-~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~ 374 (583)
|.++++..++. ++...+++---|--.|++.+ +.-+++..++|.+||+++|.||+-.++...+. ..... ...-.
T Consensus 195 d~eale~~l~~--~~vaaFivEPIQGEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQTGl~RTGk---~la~d-~env~ 268 (427)
T KOG1402|consen 195 DAEALEVALKS--PNVAAFIVEPIQGEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGLARTGK---LLACD-YENVR 268 (427)
T ss_pred CHHHHHHHhcC--CCeeEEEeeccccccceEeCCchhHHHHHHHHHhhcEEEEehhhhhcccccCc---EEEee-hhhcC
Confidence 67888888853 56666666555777786654 55789999999999999999999988876651 11111 11112
Q ss_pred CcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhC
Q psy14428 375 GQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILS 438 (583)
Q Consensus 375 ~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~ 438 (583)
+.++. |.|.++--=+-+..+++ . ++++..++.-.-...++-++++-.++.+.++
T Consensus 269 PDivi---lgKalSGG~~Pvsavl~--~-----~~im~~~~pgeHgsTyggNpLg~~vaiAale 322 (427)
T KOG1402|consen 269 PDIVI---LGKALSGGVYPVSAVLA--D-----DDIMLNIKPGEHGSTYGGNPLGCAVAIAALE 322 (427)
T ss_pred CCeEE---EeccccCCeeeeEEEEe--c-----HHHHhccCCCccccccCCChHHHHHHHHHHH
Confidence 23443 35777622345666666 4 4677776655444556667777666555554
|
|
| >KOG1358|consensus | Back alignment and domain information |
|---|
Probab=92.63 E-value=0.98 Score=46.64 Aligned_cols=207 Identities=11% Similarity=0.026 Sum_probs=115.8
Q ss_pred CCCccccCCccccCCCCCCCCChHHHHHHHHHhcc------CCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEE
Q psy14428 162 HPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEK------NLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIV 235 (583)
Q Consensus 162 ~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~------~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~ 235 (583)
+.+.+||+..+...-.+ .+.+++.....++. +...-|+...-...|.+.||++++.. +.|+-
T Consensus 93 G~~~~N~aS~NfL~l~~----~~~ike~a~~~lrkyGvGsCGPrGFYGt~DvHldlE~~iakF~G~E-------~aivY- 160 (467)
T KOG1358|consen 93 GKDVLNFASANFLGLIE----NEEIKEEASFTLRKYGVGSCGPRGFYGTIDVHLDLEKRIAKFMGTE-------DAIVY- 160 (467)
T ss_pred Cceeecccchhhhhhcc----cHHHHHHHHHHHHHhCCCCcCCCcccccceeecccHHHHHHhhCCc-------ceeee-
Confidence 44667777766542211 24455554444433 11223666666678999999999753 55665
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcC------CC
Q psy14428 236 QGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAM------PE 309 (583)
Q Consensus 236 ~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~------~~ 309 (583)
..|-+ ++.- .+..++..||.|.+.+-.-.....-++...-.++...- . |.+.++..+.+. .+
T Consensus 161 -s~gF~-ti~S---~ipafsKrGDIi~~de~~nfaIq~GlqlSRS~i~~Fkh---n----dm~~lerll~E~~~~~~K~~ 228 (467)
T KOG1358|consen 161 -SYGFS-TIES---AIPAFSKRGDIIFVDEAVNFAIQKGLQLSRSTISYFKH---N----DMEDLERLLPEQEDEDQKNP 228 (467)
T ss_pred -ccccc-hhhh---cchhhhccCcEEEEehhhhHHHHHHHhhhhheeEEecC---C----CHHHHHHhccCcchhhhhcc
Confidence 33332 2222 35667888999888776665566555555545554432 1 444454433221 11
Q ss_pred ---C-cEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcc
Q psy14428 310 ---R-SILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSK 385 (583)
Q Consensus 310 ---~-~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK 385 (583)
. .+++++-----+||...+ +.+|+++..|+..-||.||.|+-=..+...+....-.. .+..+--++++|++-
T Consensus 229 k~~~~Rrfiv~EGl~~N~g~i~p---l~~iv~lk~Kyk~RvildEs~SfG~lg~~GrGvteH~~-v~~~~iDiv~~sm~~ 304 (467)
T KOG1358|consen 229 KKALTRRFIVVEGLYANTGDICP---LPEIVKLKNKYKFRVILDESLSFGVLGKTGRGVTEHFG-VPITDIDIVTASMET 304 (467)
T ss_pred ccccceEEEEEEeeccCCCcccc---cHHHHHHHhhheEEEEEecccccccccccCccccccCC-CCccceeeeeecccc
Confidence 1 233443333456887776 55668888899999999999864433321011000000 112334578888888
Q ss_pred cccccCccceEEEE
Q psy14428 386 NMGLYGERVGTFSV 399 (583)
Q Consensus 386 ~~~l~GlRiG~lv~ 399 (583)
.++-.| |+.++
T Consensus 305 alas~G---gFc~G 315 (467)
T KOG1358|consen 305 ALASGG---GFCAG 315 (467)
T ss_pred cccccC---ceeec
Confidence 876555 66666
|
|
| >KOG0628|consensus | Back alignment and domain information |
|---|
Probab=92.00 E-value=0.28 Score=51.48 Aligned_cols=94 Identities=17% Similarity=0.187 Sum_probs=68.8
Q ss_pred EEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCC--CcEEEEeCCCCCCCCCCCCHHHHHHHHHH
Q psy14428 261 VYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPE--RSILFLQTSSHNPTGVDLSEDQWRQLAVV 338 (583)
Q Consensus 261 Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~--~~~~i~i~~p~NPTG~~~s~~~~~~l~~~ 338 (583)
+...+-+-..........|+++..++. |+ +++++.+.|.+++++... -.-++++.|- =|-.+-+-+++.+|..+
T Consensus 185 ~Y~SDqahssveka~~i~~VklR~l~t-d~-n~~mr~~~L~~AIe~D~arGlIPf~v~at~--GTT~~ca~D~l~elg~V 260 (511)
T KOG0628|consen 185 AYCSDQAHSSVEKACLIAGVKLRALPT-DE-NFGMRGDTLRKAIEEDIARGLIPFFVCATL--GTTSSCAFDELEELGPV 260 (511)
T ss_pred EEecCcccchHHHhHhhcceeEEEeec-cc-CcCCCHHHHHHHHHHHHhCCCccEEEEEee--cCccccccccHHHhcch
Confidence 345556666777777778899999998 65 799999999999976411 1122332222 24445567899999999
Q ss_pred HHhcCeEEEEeccCCCCCCC
Q psy14428 339 VKQRHLYPFFDMAYLGLTSG 358 (583)
Q Consensus 339 a~~~~i~iI~De~Y~~l~~~ 358 (583)
|+++++|+-+|.+|.+-.+-
T Consensus 261 c~~~glWLHVDAAYAGsa~i 280 (511)
T KOG0628|consen 261 CREEGLWLHVDAAYAGSAFI 280 (511)
T ss_pred hhhcCEEEEeehhhcccccc
Confidence 99999999999999976664
|
|
| >KOG0629|consensus | Back alignment and domain information |
|---|
Probab=91.88 E-value=1.3 Score=46.18 Aligned_cols=149 Identities=11% Similarity=-0.059 Sum_probs=88.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCC----------CEEEEc-CCC
Q psy14428 199 DHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGV----------KTVYFP-TPT 267 (583)
Q Consensus 199 ~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~g----------d~Vlv~-~P~ 267 (583)
...|.-..+.--..+.+-..+.+-.|++...|.|. ++||+-+--.+..+.+.-.-|+ +-|+.. +-+
T Consensus 130 ~~TYEiAPvF~lmE~~vl~km~~ivGw~~~~DgIf---~pggsisn~Ya~~~Aryk~~Pe~K~~Gm~~~p~lilFtSees 206 (510)
T KOG0629|consen 130 MFTYEIAPVFVLMEEEVLAKMREIVGWEEGGDGIF---APGGSISNMYAMNCARYKNFPEVKTKGMFALPPLILFTSEES 206 (510)
T ss_pred CceEEecceEEeehHHHHHHHHHHhCCCCCCCcee---cCCchhHHHHHHHHHHhhcCchhhhhhhhcCCcEEEEecccc
Confidence 45566666655555555555555567766666776 5665444333222222111111 233333 333
Q ss_pred ChhhHHHHhhcC---CeEEEEecccCCCCCCChhhHHHHHHcCCCC--cEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhc
Q psy14428 268 WNGHVRFCTDSR---LNVGAYRYFDNKTNGLDFAGMMEDIKAMPER--SILFLQTSSHNPTGVDLSEDQWRQLAVVVKQR 342 (583)
Q Consensus 268 y~~~~~~~~~~G---~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~--~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~ 342 (583)
.-.....+..+| -.++.|+. |+ .+.+++++|++.|..+..+ .-+++.++ --|-+.-.-+.+..|+++|++|
T Consensus 207 HYSi~kaAa~lg~gtd~c~~v~t-~e-~Gkm~~~dLe~kile~k~kg~~Pf~vnaT--aGTTV~GAFDdL~~iadiC~k~ 282 (510)
T KOG0629|consen 207 HYSIKKAAAFLGLGTDHCIKVKT-DE-RGKMIPDDLEKKILEAKAKGGVPFFVNAT--AGTTVLGAFDDLNGIADICEKH 282 (510)
T ss_pred hhhHHHHHHHhccCCceeEEecc-cc-cCccchHHHHHHHHHHHhcCCCCeEEEec--CCceeeeccCcHHHHHHHHHhc
Confidence 333555666677 57888888 54 4689999999988655322 22444333 2233334556788999999999
Q ss_pred CeEEEEeccCCC
Q psy14428 343 HLYPFFDMAYLG 354 (583)
Q Consensus 343 ~i~iI~De~Y~~ 354 (583)
++|+-+|.+|++
T Consensus 283 ~lWmHvDAAwGG 294 (510)
T KOG0629|consen 283 KLWMHVDAAWGG 294 (510)
T ss_pred CEEEEeeccccc
Confidence 999999999987
|
|
| >COG3844 Kynureninase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.90 E-value=2.1 Score=43.29 Aligned_cols=145 Identities=14% Similarity=0.098 Sum_probs=89.1
Q ss_pred CCCCCeEEEecCCchhHHHHHHHHHHHhCC-CCCEEEEcCCC-Chh----hHHHHhhcCCeEEEEecccCCCCCCChhhH
Q psy14428 227 FKDNRLAIVQGISGSGSLRVGTAFLERFYP-GVKTVYFPTPT-WNG----HVRFCTDSRLNVGAYRYFDNKTNGLDFAGM 300 (583)
Q Consensus 227 ~~~~~I~i~~t~G~~~al~l~~~~l~~~~~-~gd~Vlv~~P~-y~~----~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l 300 (583)
..++++++ +.+.+--+... +...+.. +|++|++++-. |+. ....++..|.. +.+ + ..+.+..+
T Consensus 91 A~~~Evvv--~dtts~nl~k~--L~aalr~~~~r~vIv~E~~~fpTdly~a~g~~~~~~~~---~~~---~-~~~~P~~~ 159 (407)
T COG3844 91 ARAGEVVV--TDTTSINLFKV--LAAALRPQEGRRVIVSEGDNFPTDLYIAEGLADLLGIG---YDL---E-GVIAPRAL 159 (407)
T ss_pred CCCCceEE--eCCcchHHHHH--HHHHhccCCCceEEeecCCCCCcchhhhcchhhhhccc---ccc---e-eeeChHHH
Confidence 45688888 77776666653 3344443 38999888744 322 23333444332 111 1 22356677
Q ss_pred HHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEE
Q psy14428 301 MEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLA 380 (583)
Q Consensus 301 ~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i 380 (583)
++.+ +..+.+++++.-|--||..+.. .+|-.++.+++++++-|-+++-=...- .+ ...+--+-|
T Consensus 160 ~~~~---~dd~AvV~L~~V~y~TGql~dm---~aiT~~AH~~galv~wDLAHsaGavp~------~L----h~~gaDfai 223 (407)
T COG3844 160 EEAI---TDDVAVVLLSHVNYKTGQLLDM---RAITALAHQHGALVGWDLAHSAGAVPV------DL----HAAGADFAI 223 (407)
T ss_pred HHhh---ccceEEEEeccccccccceeeH---HHHHHHHHhcCceEEeehhcccCCcce------ee----cccCCCeee
Confidence 7777 7888899999999999999874 555777889999999999875433210 11 222344667
Q ss_pred ecCccccc-ccCccceEEE
Q psy14428 381 QSFSKNMG-LYGERVGTFS 398 (583)
Q Consensus 381 ~S~SK~~~-l~GlRiG~lv 398 (583)
++--|.++ -||--.|.-+
T Consensus 224 gcsyKYLNgGPGapa~l~v 242 (407)
T COG3844 224 GCSYKYLNGGPGAPAGLFV 242 (407)
T ss_pred eeeceeccCCCCCceeEEe
Confidence 77777762 2665444333
|
|
| >TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Probab=90.69 E-value=0.38 Score=51.27 Aligned_cols=64 Identities=16% Similarity=0.251 Sum_probs=51.9
Q ss_pred ecccchhHHHHHHHHHHhhcCCCeEEecCCCCcCchhhhhhcCCCceeeeeccCCCCcccchhhhHH
Q psy14428 5 QGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMME 71 (583)
Q Consensus 5 q~~~~tg~~~~~~~~~~~~~~~~~~~~~~~p~w~n~~~~~~~~~~~~~~y~~~~~~~~~~d~~~~~~ 71 (583)
-|-+||.||.++..++.+ ++ .+|.+++|+|.++..+++..|.++..++.....+.++|++.+.+
T Consensus 100 ~t~G~~~al~~~~~~l~~--~g-d~v~i~~P~y~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~l~~ 163 (401)
T TIGR01264 100 LCSGCSHAIEMCIAALAN--AG-QNILVPRPGFPLYETLAESMGIEVKLYNLLPDKSWEIDLKQLES 163 (401)
T ss_pred ECcChHHHHHHHHHHhCC--CC-CEEEEeCCCChhHHHHHHHcCCEEEEeecCCccCCCCCHHHHHH
Confidence 366788999998887754 55 67999999999999999999999988887555566788877654
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs. |
| >PLN00145 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=90.03 E-value=0.52 Score=50.79 Aligned_cols=63 Identities=16% Similarity=0.275 Sum_probs=51.3
Q ss_pred eecccchhHHHHHHHHHHhhcCCCeEEecCCCCcCchhhhhhcCCCceeeeeccCCCCcccchhhh
Q psy14428 4 VQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGM 69 (583)
Q Consensus 4 ~q~~~~tg~~~~~~~~~~~~~~~~~~~~~~~p~w~n~~~~~~~~~~~~~~y~~~~~~~~~~d~~~~ 69 (583)
+-|-++|.||.++...|.+ ++ .+|.+++|+|.+|.......|.++..|+.....+-.+|++.+
T Consensus 121 ~it~G~~~al~l~~~~l~~--~G-d~Vlv~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~d~~~l 183 (430)
T PLN00145 121 YLTAGCAQAIEIIMSVLAQ--PG-ANILLPRPGYPLYEARAVFSGLEVRHFDLLPERGWEVDLEGV 183 (430)
T ss_pred EEeCCHHHHHHHHHHHhcC--CC-CEEEEcCCCCccHHHHHHHcCCEEEEeeCCcccCCcCCHHHH
Confidence 4577889999999998865 66 579999999999999999999999988865444456777665
|
|
| >PRK08637 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=89.92 E-value=0.6 Score=49.53 Aligned_cols=67 Identities=18% Similarity=0.328 Sum_probs=51.9
Q ss_pred eecccchhHHHHHHHHHHhhcCCCeEEecCCCCcCchhhhhh-cCCCceeeeeccCCCCcccchhhhHHHHH
Q psy14428 4 VQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCT-DSRLNVGAYRYFDNKTNGLDFAGMMEDIK 74 (583)
Q Consensus 4 ~q~~~~tg~~~~~~~~~~~~~~~~~~~~~~~p~w~n~~~~~~-~~~~~~~~y~~~~~~~~~~d~~~~~~~~~ 74 (583)
+.|-+++.||++.+..|.+ ++ .+|.+++|+|+++..++. ..|.++..|+..+. ..++|++.+.+.++
T Consensus 73 ~it~G~~~al~~~~~~l~~--~g-d~Vlv~~P~y~~~~~~~~~~~g~~vv~v~~~~~-~~~~d~~~l~~~~~ 140 (388)
T PRK08637 73 IVTNALTHGLSLVADLFVD--QG-DTVLLPDHNWGNYKLTFNTRRGAEIVTYPIFDE-DGGFDTDALKEALQ 140 (388)
T ss_pred eEccchHHHHHHHHHHhcC--CC-CEEEEcCCCCccHHHHHHHhcCCEEEEecccCC-CCcCCHHHHHHHHH
Confidence 5677778888888887765 55 579999999999999875 67999999998532 24788887765554
|
|
| >PRK07550 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=88.53 E-value=0.86 Score=48.23 Aligned_cols=63 Identities=13% Similarity=0.018 Sum_probs=48.3
Q ss_pred cccchhHHHHHHHHHHhhcCCCeEEecCCCCcCchhhhhhcCCCceeeeeccCCCCcccchhhhHH
Q psy14428 6 GISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMME 71 (583)
Q Consensus 6 ~~~~tg~~~~~~~~~~~~~~~~~~~~~~~p~w~n~~~~~~~~~~~~~~y~~~~~~~~~~d~~~~~~ 71 (583)
|-++|.||.+.+..+.+ ++ .+|.+++|+|.++..+++..|.++..|+..+..+..+|.+.+.+
T Consensus 96 t~G~~~al~~~~~~l~~--~g-d~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~ 158 (386)
T PRK07550 96 TSGCNQAFWAAMVTLAG--AG-DEVILPLPWYFNHKMWLDMLGIRPVYLPCDEGPGLLPDPAAAEA 158 (386)
T ss_pred ecCcHHHHHHHHHHhcC--CC-CEEEEcCCCCcchHHHHHhcCCEEEEEecCCCcCCCCCHHHHHH
Confidence 44567899888887754 56 57999999999999999999999999987543344456655543
|
|
| >KOG0634|consensus | Back alignment and domain information |
|---|
Probab=88.45 E-value=2.7 Score=44.06 Aligned_cols=150 Identities=11% Similarity=0.011 Sum_probs=84.9
Q ss_pred hcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHH
Q psy14428 373 EVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERI 452 (583)
Q Consensus 373 ~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~ 452 (583)
.+-|+=++-+-++.+- +.+|.+=+...+| ++.+...-.++......+.+.+++.+++..
T Consensus 299 PGlRlG~it~~~~~l~-ril~~ae~~t~~p--------------------Sg~sq~iv~a~l~~wgqeG~~~wi~~l~~~ 357 (472)
T KOG0634|consen 299 PGLRLGWITGNSLFLK-RILDLAEVATSGP--------------------SGFSQGIVYAMLKRWGQEGFLRWIQHLRSS 357 (472)
T ss_pred CcceeEEeecCHHHHH-HHhhhcceeecCc--------------------ccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666665 7777776665223 233333333333333445556666667766
Q ss_pred HHHHHHHH----hhcc------CCCccchhhHHHHhc-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCCC
Q psy14428 453 MSQLKILI----RGFY------SNPPIHGARIVTEIL-SDPKLKAQWFEECKGMSNRISSIREELKSKILDK---GSKKN 518 (583)
Q Consensus 453 ~~~l~~~~----r~~~------~~~p~~g~~i~~~~l-~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~---~~pg~ 518 (583)
++.|+..+ +..+ -++|.+|.|+|+++. .+ -.+.+.+-+.++.+...+.+. .++|.
T Consensus 358 Yt~Rrn~~l~Al~kylp~~~~~~~~P~aGmFiwv~i~~~~-----------~~~~~~i~q~~e~i~~~~vk~gV~~v~G~ 426 (472)
T KOG0634|consen 358 YTERRNALLSALDKYLPKSVCEYHPPKAGMFIWVEIPYIN-----------FDTKKSINQIEEIIFIKAVKNGVKLVCGS 426 (472)
T ss_pred HHHHHHHHHHHHHHhCCCCeeEEecCCcceEEEEEecccc-----------cccccchHHHHHHHHHHHHHCCeEEecCc
Confidence 66665442 2111 278999999999985 00 001122334555555555553 36787
Q ss_pred cccccccc------cceeecCCChhhhhhhhhhhhHHHHHHHH
Q psy14428 519 WDHITNQK------GMFCYTGLSASQGMSNRISSIREELKSKI 555 (583)
Q Consensus 519 ~~~~~~~~------g~f~~~~l~~~~~~~~~~~~~~~~~~~~~ 555 (583)
|-...|+. -+++|+..+.+++++ ++.++...+++..
T Consensus 427 ~F~v~p~~s~~kiffRls~a~a~~e~l~~-g~~rf~~~ike~f 468 (472)
T KOG0634|consen 427 WFMVDPESSWSKIFFRLSIAFAEPEKLDE-GIERFGSVIKEHF 468 (472)
T ss_pred eeEEcCccCCCcceEEEEeecCCHHHHHH-HHHHHHHHHHHHh
Confidence 54333222 245667788888876 7777777776554
|
|
| >PRK08912 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=88.42 E-value=0.79 Score=48.54 Aligned_cols=64 Identities=14% Similarity=0.124 Sum_probs=49.1
Q ss_pred eecccchhHHHHHHHHHHhhcCCCeEEecCCCCcCchhhhhhcCCCceeeeeccCCCCcccchhhhHH
Q psy14428 4 VQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMME 71 (583)
Q Consensus 4 ~q~~~~tg~~~~~~~~~~~~~~~~~~~~~~~p~w~n~~~~~~~~~~~~~~y~~~~~~~~~~d~~~~~~ 71 (583)
+-|-|||+||.+....+.+ ++ .+|.+++|+|+++..+++..|.++..++. ++.+.++|.+.+.+
T Consensus 91 ~~t~G~~~al~~~~~~~~~--~g-d~Vlv~~p~y~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~l~~ 154 (387)
T PRK08912 91 MVTSGATEALAAALLALVE--PG-DEVVLFQPLYDAYLPLIRRAGGVPRLVRL-EPPHWRLPRAALAA 154 (387)
T ss_pred EEeCCcHHHHHHHHHHhcC--CC-CEEEEeCCCchhhHHHHHHcCCEEEEEec-CcccCcCCHHHHHH
Confidence 4566889998777665533 55 68999999999999999999999988885 34445677776544
|
|
| >KOG1405|consensus | Back alignment and domain information |
|---|
Probab=86.87 E-value=18 Score=37.23 Aligned_cols=180 Identities=18% Similarity=0.172 Sum_probs=91.5
Q ss_pred ChhhHHHHHHcCC--CCcEEEEeCCCCCCCC--CCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHH-
Q psy14428 296 DFAGMMEDIKAMP--ERSILFLQTSSHNPTG--VDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYF- 370 (583)
Q Consensus 296 d~~~l~~~l~~~~--~~~~~i~i~~p~NPTG--~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~- 370 (583)
.++.+++.|.+.. ..+.+-+|.-|----| .--|++-.+.|.+++++|++..|+||+--+-.-.+ ..+.-..+
T Consensus 254 Cl~~Ve~li~~~~~k~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTG---k~WaHehw~ 330 (484)
T KOG1405|consen 254 CLAEVEDLIVKYRKKKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATG---KFWAHEHWN 330 (484)
T ss_pred HHHHHHHHHHHHhhcCCCeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccC---ceeeehhcC
Confidence 3566666665543 2233433444433333 45689999999999999999999999964433222 11110000
Q ss_pred HHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHH--HHHHHHhccccCCCh--HHHHHHHHHhCChhhhhhh
Q psy14428 371 AKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMS--QLKILIRGFYSNPPI--HGARIVTEILSDPKLKAQC 446 (583)
Q Consensus 371 ~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~--~l~~~~~~~~~~~s~--~~q~~~~~~l~~~~~~~~~ 446 (583)
.+.... +-+|||-|- .| ||..- + +++- ..+.. ++|.+-|. +....+.+.+.++.+....
T Consensus 331 l~~PpD---~vTFSKK~q-~g---Gffh~--~------~frpn~pYrif--NTWmGdP~k~lll~~vv~~I~~~~Ll~n~ 393 (484)
T KOG1405|consen 331 LDSPPD---VVTFSKKFQ-TG---GFFHD--E------EFRPNEPYRIF--NTWMGDPSKNLLLEEVVQEIKREDLLNNV 393 (484)
T ss_pred CCCCcc---ceehhhhhh-cC---ccccC--c------ccCCCchHHHh--hhhcCChHHHHHHHHHHHHHhHHHHHHHH
Confidence 011112 347899885 33 44433 1 2221 22222 23333322 2222334444454444433
Q ss_pred hhHHH-HHHHHHHHHh---hccCCCccchhhHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy14428 447 DETER-IMSQLKILIR---GFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKG 514 (583)
Q Consensus 447 ~~~~~-~~~~l~~~~r---~~~~~~p~~g~~i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~ 514 (583)
+.+-. +++.+..+-+ ..+...-..|.|+.+.+.+. +.|+.|...++-.|
T Consensus 394 ~~vG~~l~~gL~~Lq~~~p~~~~~~RGrGTF~a~d~ps~-------------------~~Rdk~i~~~~~nG 446 (484)
T KOG1405|consen 394 AHVGKALLKGLLELQAKYPGKINNLRGRGTFIAWDCPSG-------------------SIRDKLILIARLNG 446 (484)
T ss_pred HHHHHHHHHHHHHHHHhCchhhhcccccceEEEEeCCCh-------------------HHHHHHHHHHHHcC
Confidence 33322 2233333222 12334444688888877774 67778777776644
|
|
| >PRK09082 methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=86.78 E-value=0.9 Score=48.13 Aligned_cols=63 Identities=13% Similarity=0.103 Sum_probs=49.5
Q ss_pred cccchhHHHHHHHHHHhhcCCCeEEecCCCCcCchhhhhhcCCCceeeeeccCCCCcccchhhhHHH
Q psy14428 6 GISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMED 72 (583)
Q Consensus 6 ~~~~tg~~~~~~~~~~~~~~~~~~~~~~~p~w~n~~~~~~~~~~~~~~y~~~~~~~~~~d~~~~~~~ 72 (583)
|-|||+||.+....+.+ ++ .+|.+++|+|.++...++..|.++..++. +..+..+|++.+.+.
T Consensus 97 t~G~~~al~~~~~~~~~--~g-d~Vli~~p~y~~~~~~~~~~g~~~~~~~~-~~~~~~~d~~~l~~~ 159 (386)
T PRK09082 97 TAGATEALFAAILALVR--PG-DEVIVFDPSYDSYAPAIELAGGRAVRVAL-QPPDFRVDWQRFAAA 159 (386)
T ss_pred eCCHHHHHHHHHHHHcC--CC-CEEEEeCCCchhhHHHHHHcCCEEEEEec-CcccccCCHHHHHHh
Confidence 45679999988876643 55 67999999999999999999999988887 334567787765544
|
|
| >PRK07309 aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=85.63 E-value=1.5 Score=46.48 Aligned_cols=67 Identities=15% Similarity=0.185 Sum_probs=50.3
Q ss_pred eecccchhHHHHHHHHHHhhcCCCeEEecCCCCcCchhhhhhcCCCceeeeeccCCCCcccchhhhHHHHH
Q psy14428 4 VQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIK 74 (583)
Q Consensus 4 ~q~~~~tg~~~~~~~~~~~~~~~~~~~~~~~p~w~n~~~~~~~~~~~~~~y~~~~~~~~~~d~~~~~~~~~ 74 (583)
+.|-+||+|+.+....+.. ++ .+|.+++|+|.++..+++..|.++..++- +..+-.+|.+.+.+.++
T Consensus 95 ~it~G~~~al~~~~~~~~~--~g-d~vl~~~p~y~~~~~~~~~~g~~~~~~~~-~~~~~~~d~~~l~~~~~ 161 (391)
T PRK07309 95 LVTIGATEALSASLTAILE--PG-DKVLLPAPAYPGYEPIVNLVGAEIVEIDT-TENDFVLTPEMLEKAIL 161 (391)
T ss_pred EEeCChHHHHHHHHHHhcC--CC-CEEEEeCCCCcchHHHHHHcCCEEEEEec-CCcCCcCCHHHHHHHhh
Confidence 3467889999998887643 55 67999999999999999999999877763 33334577766654443
|
|
| >PRK08361 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=85.12 E-value=1.6 Score=46.33 Aligned_cols=66 Identities=14% Similarity=0.039 Sum_probs=51.3
Q ss_pred ecccchhHHHHHHHHHHhhcCCCeEEecCCCCcCchhhhhhcCCCceeeeeccCCCCcccchhhhHHHH
Q psy14428 5 QGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDI 73 (583)
Q Consensus 5 q~~~~tg~~~~~~~~~~~~~~~~~~~~~~~p~w~n~~~~~~~~~~~~~~y~~~~~~~~~~d~~~~~~~~ 73 (583)
-|-|||.|+.+....+.+ ++ .+|.+++|+|..+...++..|.++..++.-+..+.++|.+.+.+.+
T Consensus 98 ~t~G~~~al~~~~~~l~~--~g-~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i 163 (391)
T PRK08361 98 VTAGAYEATYLAFESLLE--EG-DEVIIPDPAFVCYVEDAKIAEAKPIRIPLREENEFQPDPDELLELI 163 (391)
T ss_pred EeCChHHHHHHHHHHhcC--CC-CEEEEcCCCCcccHHHHHHcCCEEEEEecCCccCCCCCHHHHHHhc
Confidence 355788899988876644 55 6899999999999999999999998888744435568887776544
|
|
| >cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=84.84 E-value=1.4 Score=39.83 Aligned_cols=59 Identities=19% Similarity=0.083 Sum_probs=45.9
Q ss_pred ecccchhHHHHHHHHHHhhcCCCeEEecCCCCcCchh-hhhhcCCCceeeeeccCCCCcccch
Q psy14428 5 QGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHV-RFCTDSRLNVGAYRYFDNKTNGLDF 66 (583)
Q Consensus 5 q~~~~tg~~~~~~~~~~~~~~~~~~~~~~~p~w~n~~-~~~~~~~~~~~~y~~~~~~~~~~d~ 66 (583)
-+-|||.|+.+++..+.+ ++ ++|++++|+|..+. .+.+..|.++..++..+......|+
T Consensus 22 ~~~~~t~a~~~~~~~~~~--~~-~~v~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~ 81 (170)
T cd01494 22 FVPSGTGANEAALLALLG--PG-DEVIVDANGHGSRYWVAAELAGAKPVPVPVDDAGYGGLDV 81 (170)
T ss_pred EeCCcHHHHHHHHHHhCC--CC-CEEEEeecccceehhhHHHhcCCEEEEeccCCCCccchhh
Confidence 345999999999998854 34 68999999999998 8888889999988876554333443
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis |
| >PRK08636 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=84.78 E-value=1.8 Score=46.20 Aligned_cols=66 Identities=17% Similarity=0.224 Sum_probs=49.9
Q ss_pred cchhHHHHHHHHHHhhcCCCeEEecCCCCcCchhhhhhcCCCceeeeec-cCCCCcccchhhhHHHHHhhh
Q psy14428 8 SGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRY-FDNKTNGLDFAGMMEDIKLAI 77 (583)
Q Consensus 8 ~~tg~~~~~~~~~~~~~~~~~~~~~~~p~w~n~~~~~~~~~~~~~~y~~-~~~~~~~~d~~~~~~~~~~a~ 77 (583)
+++.||.+....|.+ ++ .+|.+++|+|.++..+++..|.++..++- ++. .-++|++.++..++.+-
T Consensus 103 G~~~al~~~~~~l~~--~g-d~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~-~~~~d~~~l~~~l~~~~ 169 (403)
T PRK08636 103 GSKEGYVHLVQAITN--PG-DVAIVPDPAYPIHSQAFILAGGNVHKMPLEYNE-DFELDEDQFFENLEKAL 169 (403)
T ss_pred ChHHHHHHHHHHhCC--CC-CEEEEcCCCCcchHHHHHhcCCEEEEEeccccc-cCccChhhhhhHHHHHH
Confidence 345666666665544 55 68999999999999999999999988875 222 35899999887776654
|
|
| >PLN02656 tyrosine transaminase | Back alignment and domain information |
|---|
Probab=84.62 E-value=2 Score=45.97 Aligned_cols=63 Identities=17% Similarity=0.240 Sum_probs=48.8
Q ss_pred ecccchhHHHHHHHHHHhhcCCCeEEecCCCCcCchhhhhhcCCCceeeeeccCCCCcccchhhhH
Q psy14428 5 QGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMM 70 (583)
Q Consensus 5 q~~~~tg~~~~~~~~~~~~~~~~~~~~~~~p~w~n~~~~~~~~~~~~~~y~~~~~~~~~~d~~~~~ 70 (583)
-|-++|.||++....+.+ ++ .+|.+++|+|+++....+..|.++..++..+...-.+|++.+.
T Consensus 101 ~t~G~~~al~~~~~~l~~--~g-d~Vlv~~p~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~ 163 (409)
T PLN02656 101 ITSGCTQAIDVALSMLAR--PG-ANILLPRPGFPIYELCAAFRHLEVRYVDLLPEKGWEVDLDAVE 163 (409)
T ss_pred EeCChHHHHHHHHHHHhC--CC-CeEEEeCCCCCcHHHHHHHcCCEEEEEeCCCcCCCCCCHHHHH
Confidence 355778999988887754 55 6799999999999999999999999888643333457776654
|
|
| >TIGR03540 DapC_direct LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=84.49 E-value=1.5 Score=46.42 Aligned_cols=62 Identities=16% Similarity=0.059 Sum_probs=44.9
Q ss_pred chhHHHHHHHHHHhhcCCCeEEecCCCCcCchhhhhhcCCCceeeeeccCCCCcccchhhhHHHH
Q psy14428 9 GSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDI 73 (583)
Q Consensus 9 ~tg~~~~~~~~~~~~~~~~~~~~~~~p~w~n~~~~~~~~~~~~~~y~~~~~~~~~~d~~~~~~~~ 73 (583)
++.+|.+....+.+ ++ .+|.+++|+|.++..+++..|.++..|+..+...-.+|++.+.+.+
T Consensus 100 ~~~~l~~~~~~~~~--~g-d~vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~g~~~d~~~l~~~~ 161 (383)
T TIGR03540 100 SKEGIAHIPLAFVN--PG-DIVLVPDPGYPVYRIGTLFAGGEPYEMPLKEENGFLPDFDAIPEDI 161 (383)
T ss_pred cHHHHHHHHHHhCC--CC-CEEEEeCCCCcchHHHHHhcCCEEEEEecCcccCCccCHHHHHhhc
Confidence 35666666555433 45 6899999999999999999999999998743322345777765544
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation. |
| >PRK07337 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=84.08 E-value=1.7 Score=46.01 Aligned_cols=64 Identities=16% Similarity=0.115 Sum_probs=48.9
Q ss_pred ecccchhHHHHHHHHHHhhcCCCeEEecCCCCcCchhhhhhcCCCceeeeeccCCCCcccchhhhHH
Q psy14428 5 QGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMME 71 (583)
Q Consensus 5 q~~~~tg~~~~~~~~~~~~~~~~~~~~~~~p~w~n~~~~~~~~~~~~~~y~~~~~~~~~~d~~~~~~ 71 (583)
-|-++|.||++.+..+.+ ++ .+|.+++|+|.++..+++..|.++..++.-...+-++|++.+.+
T Consensus 95 ~t~G~~~al~~~~~~l~~--~g-d~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~ 158 (388)
T PRK07337 95 VTAGASAALLLACLALVE--RG-DEVLMPDPSYPCNRHFVAAAEGRPVLVPSGPAERFQLTAADVEA 158 (388)
T ss_pred EecCcHHHHHHHHHHhcC--CC-CEEEEeCCCchhhHHHHHHcCCEEEEeecCCccCCcCCHHHHHh
Confidence 455788999988887643 55 68999999999999999999998888876333345677766543
|
|
| >COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.83 E-value=42 Score=32.34 Aligned_cols=121 Identities=15% Similarity=0.108 Sum_probs=75.3
Q ss_pred HHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEecc
Q psy14428 272 VRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMA 351 (583)
Q Consensus 272 ~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~ 351 (583)
...++.+|..++.... +.. ..-..+++.+.+.... ...++ +|.+.|..++..+-.+|++.++-+
T Consensus 52 ~~~Ae~~gi~l~~~~~-~g~-~e~eve~L~~~l~~l~--~d~iv-------~GaI~s~yqk~rve~lc~~lGl~~----- 115 (223)
T COG2102 52 ELQAEAMGIPLVTFDT-SGE-EEREVEELKEALRRLK--VDGIV-------AGAIASEYQKERVERLCEELGLKV----- 115 (223)
T ss_pred HHHHHhcCCceEEEec-Ccc-chhhHHHHHHHHHhCc--ccEEE-------EchhhhHHHHHHHHHHHHHhCCEE-----
Confidence 3456778888888776 221 2235677777775443 45666 899999999999999999999854
Q ss_pred CCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhcc
Q psy14428 352 YLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGF 421 (583)
Q Consensus 352 Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~ 421 (583)
|.+++-.+ +..-+..+...+-+++++. .|| .|++..=+|.-+- .+.++.+....+..
T Consensus 116 ~~PLWg~d---~~ell~e~~~~Gf~~~Iv~-Vsa-~gL~~~~lGr~i~--------~~~~e~l~~l~~~y 172 (223)
T COG2102 116 YAPLWGRD---PEELLEEMVEAGFEAIIVA-VSA-EGLDESWLGRRID--------REFLEELKSLNRRY 172 (223)
T ss_pred eecccCCC---HHHHHHHHHHcCCeEEEEE-Eec-cCCChHHhCCccC--------HHHHHHHHHHHHhc
Confidence 56777554 2234445555544555554 333 3344333444332 46777777664433
|
|
| >KOG2040|consensus | Back alignment and domain information |
|---|
Probab=83.48 E-value=12 Score=41.40 Aligned_cols=139 Identities=9% Similarity=0.095 Sum_probs=89.6
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhC-CCC----CEEEEcCCCChhhHHHHhhcC
Q psy14428 205 IGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFY-PGV----KTVYFPTPTWNGHVRFCTDSR 279 (583)
Q Consensus 205 ~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~-~~g----d~Vlv~~P~y~~~~~~~~~~G 279 (583)
.+|+.++-+.+-+++-.--| -|++.+-+.+|+++- +.....++... ..| ...++|.-....-...++++|
T Consensus 577 aqGY~~lf~~Le~~Lc~iTG----~D~~s~QPNsGA~GE-YaGL~~IRaY~~~kge~hRnvClIPvSAHGTNPASA~Mag 651 (1001)
T KOG2040|consen 577 AQGYQQLFTELEKDLCEITG----FDSFSLQPNSGAQGE-YAGLRVIRAYLESKGEGHRNVCLIPVSAHGTNPASAAMAG 651 (1001)
T ss_pred HhhHHHHHHHHHHHhheeec----ccceeecCCCCcccc-hhhHHHHHHHHHhccCCcceeEEEeecccCCChhhHHhcC
Confidence 46777777777776644322 245555335555543 22222233322 112 234566656666677889999
Q ss_pred CeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCC
Q psy14428 280 LNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYL 353 (583)
Q Consensus 280 ~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~ 353 (583)
.++++|.+ |. +..+|..+|.+..++....-.++.+..|. |-.++ .+.+++++++..+||--|..|-+-.
T Consensus 652 mkvvpV~~-~~-~G~id~~dLk~kaekh~~~Laa~MvTYPS--T~Gvf-E~~i~d~cd~iHehGGQVYlDGANM 720 (1001)
T KOG2040|consen 652 MKVVPVGC-DA-NGNIDMVDLKAKAEKHKDNLAALMVTYPS--THGVF-EEGIDDICDIIHEHGGQVYLDGANM 720 (1001)
T ss_pred CEEEEeec-cC-CCCccHHHHHHHHHHhhhhhheeEEeccc--ccccc-cccHHHHHHHHHhcCCEEEecCCCc
Confidence 99999998 54 46899999998887765555556665553 32333 4567899999999999999998753
|
|
| >TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases | Back alignment and domain information |
|---|
Probab=82.87 E-value=1.9 Score=45.91 Aligned_cols=64 Identities=20% Similarity=0.273 Sum_probs=51.0
Q ss_pred ecccchhHHHHHHHHHHhhcCCCeEEecCCCCcCchhhhhhcCCCceeeeeccCCCCcccchhhhHH
Q psy14428 5 QGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMME 71 (583)
Q Consensus 5 q~~~~tg~~~~~~~~~~~~~~~~~~~~~~~p~w~n~~~~~~~~~~~~~~y~~~~~~~~~~d~~~~~~ 71 (583)
-|-|||.|+.++...+.. ++ .+|-+++|+|..+..+++..|+++..++.-...+.++|++.+.+
T Consensus 101 ~t~G~t~al~~~~~~l~~--~g-d~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~ 164 (403)
T TIGR01265 101 LTSGCSQAIEICIEALAN--PG-ANILVPRPGFPLYDTRAAFSGLEVRLYDLLPEKDWEIDLDGLEA 164 (403)
T ss_pred EecChHHHHHHHHHHhCC--CC-CEEEEeCCCchhHHHHHHHcCCEEEEecCCcccCCccCHHHHHH
Confidence 456789999999887753 55 67999999999999999999999988876434456788877754
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. |
| >PRK07777 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=82.68 E-value=2.1 Score=45.30 Aligned_cols=67 Identities=10% Similarity=0.181 Sum_probs=50.4
Q ss_pred eecccchhHHHHHHHHHHhhcCCCeEEecCCCCcCchhhhhhcCCCceeeeeccCC-CCcccchhhhHHHH
Q psy14428 4 VQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDN-KTNGLDFAGMMEDI 73 (583)
Q Consensus 4 ~q~~~~tg~~~~~~~~~~~~~~~~~~~~~~~p~w~n~~~~~~~~~~~~~~y~~~~~-~~~~~d~~~~~~~~ 73 (583)
+-|-|||+||.++..-+.+ ++ .+|.+++|+|..+..+++..|.++..+++.+. .+-.+|++.+.+.+
T Consensus 89 ~~t~G~~~al~~~~~~~~~--~g-d~vli~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~ 156 (387)
T PRK07777 89 LVTVGATEAIAAAVLGLVE--PG-DEVLLIEPYYDSYAAVIAMAGAHRVPVPLVPDGRGFALDLDALRAAV 156 (387)
T ss_pred EEeCCcHHHHHHHHHHhcC--CC-CEEEEeCCCchhhHHHHHHCCCEEEEeecCCccCCCcCCHHHHHHhc
Confidence 4467889999876654432 44 57999999999999999999999888887654 24457877765533
|
|
| >PRK05957 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=82.49 E-value=2.1 Score=45.33 Aligned_cols=65 Identities=14% Similarity=0.094 Sum_probs=48.9
Q ss_pred ecccchhHHHHHHHHHHhhcCCCeEEecCCCCcCchhhhhhcCCCceeeeeccCCCCcccchhhhHHHHH
Q psy14428 5 QGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIK 74 (583)
Q Consensus 5 q~~~~tg~~~~~~~~~~~~~~~~~~~~~~~p~w~n~~~~~~~~~~~~~~y~~~~~~~~~~d~~~~~~~~~ 74 (583)
-|-+++.+|.+....+.. ++ .+|.+++|+|.+|...++..|.++..++. + ...++|++.+.+.++
T Consensus 94 ~t~G~~~~l~~~~~~~~~--~g-d~Vlv~~P~y~~~~~~~~~~g~~~~~v~~-~-~~~~~d~~~l~~~i~ 158 (389)
T PRK05957 94 VTAGSNMAFMNAILAITD--PG-DEIILNTPYYFNHEMAITMAGCQPILVPT-D-DNYQLQPEAIEQAIT 158 (389)
T ss_pred EeCChHHHHHHHHHHhcC--CC-CEEEEeCCCCcCHHHHHHhcCCEEEEeec-C-CCCCcCHHHHHHhcC
Confidence 355666788766655532 55 67999999999999999999999888764 3 345789998887654
|
|
| >PTZ00433 tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=82.48 E-value=2.3 Score=45.51 Aligned_cols=64 Identities=14% Similarity=0.187 Sum_probs=49.7
Q ss_pred ecccchhHHHHHHHHHHhhcCCCeEEecCCCCcCchhhhhhcCCCceeeeeccCCCCcccchhhhHH
Q psy14428 5 QGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMME 71 (583)
Q Consensus 5 q~~~~tg~~~~~~~~~~~~~~~~~~~~~~~p~w~n~~~~~~~~~~~~~~y~~~~~~~~~~d~~~~~~ 71 (583)
-|-++|.||.+....+.. ++ .+|.+++|+|.++..+++..|.++..++.-.....++|++.+.+
T Consensus 109 it~G~~~al~~~~~~~~~--~g-d~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~ 172 (412)
T PTZ00433 109 LCSGVSHAILMALTALCD--EG-DNILVPAPGFPHYETVCKAYGIEMRFYNCRPEKDWEADLDEIRR 172 (412)
T ss_pred EeCChHHHHHHHHHHhcC--CC-CEEEEccCCcccHHHHHHHcCCEEEEEecCccccCcCCHHHHHH
Confidence 355678899988887744 55 68999999999999999999999988876433345778776643
|
|
| >PTZ00377 alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=82.26 E-value=2.6 Score=46.10 Aligned_cols=70 Identities=17% Similarity=0.078 Sum_probs=51.6
Q ss_pred eecccchhHHHHHHHHHHhhcCCCeEEecCCCCcCchhhhhhcCCCceeeeeccCCCCcccchhhhHHHHHh
Q psy14428 4 VQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKL 75 (583)
Q Consensus 4 ~q~~~~tg~~~~~~~~~~~~~~~~~~~~~~~p~w~n~~~~~~~~~~~~~~y~~~~~~~~~~d~~~~~~~~~~ 75 (583)
+-|-+++.||.+.+..|.. -++ ..|.+++|+|.++..+++..|..+..++.-....-++|++.+-+.++.
T Consensus 142 ~it~Ga~~al~~~~~~l~~-~~g-D~Vlv~~P~y~~y~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~l~~ 211 (481)
T PTZ00377 142 FLTDGASSGIKLLLQLLIG-DPS-DGVMIPIPQYPLYSAAITLLGGKQVPYYLDEEKGWSLDQEELEEAYEQ 211 (481)
T ss_pred EEcCCHHHHHHHHHHHhcc-CCC-CEEEECCCCchhHHHHHHHcCCEEEEEEeccccCCCCCHHHHHHHHHH
Confidence 3466788899998887741 145 679999999999999999999998877653222236788777665543
|
|
| >PLN02187 rooty/superroot1 | Back alignment and domain information |
|---|
Probab=81.06 E-value=2.6 Score=45.96 Aligned_cols=63 Identities=17% Similarity=0.267 Sum_probs=49.6
Q ss_pred ecccchhHHHHHHHHHHhhcCCCeEEecCCCCcCchhhhhhcCCCceeeeeccCCCCcccchhhhH
Q psy14428 5 QGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMM 70 (583)
Q Consensus 5 q~~~~tg~~~~~~~~~~~~~~~~~~~~~~~p~w~n~~~~~~~~~~~~~~y~~~~~~~~~~d~~~~~ 70 (583)
-|-+++.||.+....|.+ |+ .+|.+++|+|..+....+..|.++..++......-++|++.+.
T Consensus 136 it~G~~~al~~~~~~l~~--pG-d~Vlv~~P~y~~y~~~~~~~g~~~~~~~l~~~~~~~~d~~~l~ 198 (462)
T PLN02187 136 LTAGCNQGIEIVFESLAR--PN-ANILLPRPGFPHYDARAAYSGLEVRKFDLLPEKEWEIDLEGIE 198 (462)
T ss_pred EeCCHHHHHHHHHHHhcC--CC-CEEEEeCCCCccHHHHHHHcCCEEEEEeCccccCCccCHHHHH
Confidence 355678889888887754 66 6799999999999999999999999888754444567776654
|
|
| >PRK09276 LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=81.05 E-value=2.6 Score=44.54 Aligned_cols=59 Identities=10% Similarity=-0.024 Sum_probs=42.3
Q ss_pred cchhHHHHHHHHHHhhcCCCeEEecCCCCcCchhhhhhcCCCceeeeeccCCCCcccchhhh
Q psy14428 8 SGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGM 69 (583)
Q Consensus 8 ~~tg~~~~~~~~~~~~~~~~~~~~~~~p~w~n~~~~~~~~~~~~~~y~~~~~~~~~~d~~~~ 69 (583)
++|.+|.+....+.+ ++ .+|.+++|+|.++..+++..|.++..++..+...-.+|++.+
T Consensus 101 G~~~~i~~~~~~~~~--~g-d~Vl~~~P~y~~~~~~~~~~g~~~~~v~~~~~~g~~~d~~~l 159 (385)
T PRK09276 101 GSKEGIAHIPLAFVN--PG-DVVLVPDPGYPVYKIGTIFAGGEPYFMPLKEENGFLPDLDAI 159 (385)
T ss_pred CcHHHHHHHHHHhCC--CC-CEEEEcCCCCcChHHHHHHcCCEEEEEecCCCCCCcCCHHHH
Confidence 345777766665533 45 689999999999999999999999988874432222555554
|
|
| >PRK06108 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=81.02 E-value=2.7 Score=44.18 Aligned_cols=65 Identities=22% Similarity=0.147 Sum_probs=49.7
Q ss_pred ecccchhHHHHHHHHHHhhcCCCeEEecCCCCcCchhhhhhcCCCceeeeeccCC-CCcccchhhhHHH
Q psy14428 5 QGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDN-KTNGLDFAGMMED 72 (583)
Q Consensus 5 q~~~~tg~~~~~~~~~~~~~~~~~~~~~~~p~w~n~~~~~~~~~~~~~~y~~~~~-~~~~~d~~~~~~~ 72 (583)
-|-||+.|+.+....+.+ ++ .+|.+++|+|.++..+++..|.++..++..+. ....+|++.+.+.
T Consensus 89 ~t~g~~~al~~~~~~l~~--~g-d~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~ 154 (382)
T PRK06108 89 VTSSGVQALMLAAQALVG--PG-DEVVAVTPLWPNLVAAPKILGARVVCVPLDFGGGGWTLDLDRLLAA 154 (382)
T ss_pred EeCChHHHHHHHHHHhcC--CC-CEEEEeCCCccchHHHHHHCCCEEEEeeCCCCCCCccCCHHHHHHh
Confidence 356788898888776644 55 57999999999999999999999998887542 2344777766543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 583 | ||||
| 3pd6_A | 401 | Crystal Structure Of Mouse Mitochondrial Aspartate | 1e-104 | ||
| 3hlm_A | 401 | Crystal Structure Of Mouse Mitochondrial Aspartate | 1e-104 | ||
| 7aat_A | 401 | X-Ray Structure Refinement And Comparison Of Three | 1e-100 | ||
| 1aka_A | 401 | Structural Basis For The Catalytic Activity Of Aspa | 1e-100 | ||
| 1ajs_A | 412 | Refinement And Comparison Of The Crystal Structures | 5e-83 | ||
| 1ajr_A | 412 | Refinement And Comparison Of The Crystal Structures | 2e-82 | ||
| 3ii0_A | 422 | Crystal Structure Of Human Glutamate Oxaloacetate T | 2e-80 | ||
| 2cst_A | 411 | Crystal Structure Of The Closed Form Of Chicken Cyt | 3e-79 | ||
| 1aat_A | 411 | Oxoglutarate-Induced Conformational Changes In Cyto | 1e-78 | ||
| 4eu1_A | 409 | Structure Of A Mitochondrial Aspartate Aminotransfe | 4e-71 | ||
| 1yaa_A | 412 | Aspartate Aminotransferase From Saccharomyces Cerev | 2e-67 | ||
| 3tat_A | 397 | Tyrosine Aminotransferase From E. Coli Length = 397 | 2e-64 | ||
| 3fsl_A | 397 | Crystal Structure Of Tyrosine Aminotransferase Trip | 1e-62 | ||
| 4h51_A | 420 | Crystal Structure Of A Putative Aspartate Aminotran | 6e-62 | ||
| 4f4e_A | 420 | Crystal Structure Of Aromatic-Amino-Acid Aminotrans | 7e-60 | ||
| 4eff_A | 420 | Crystal Structure Of Aromatic-Amino-Acid Aminotrans | 7e-60 | ||
| 3meb_A | 448 | Structure Of Cytoplasmic Aspartate Aminotransferase | 2e-58 | ||
| 1b4x_A | 396 | Aspartate Aminotransferase From E. Coli, C191s Muta | 4e-56 | ||
| 3aat_A | 396 | Activity And Structure Of The Active-Site Mutants R | 1e-55 | ||
| 1asl_A | 396 | Crystal Structures Of Escherichia Coli Aspartate Am | 1e-55 | ||
| 1qir_A | 396 | Aspartate Aminotransferase From Escherichia Coli, C | 2e-55 | ||
| 1qit_A | 396 | Aspartate Aminotransferase From Escherichia Coli, C | 2e-55 | ||
| 1qis_A | 396 | Aspartate Aminotransferase From Escherichia Coli, C | 2e-55 | ||
| 1ix6_A | 396 | Aspartate Aminotransferase Active Site Mutant V39f | 3e-55 | ||
| 1asf_A | 396 | The Structural Basis For The Reduced Activity Of Th | 3e-55 | ||
| 2q7w_A | 396 | Structural Studies Reveals The Inactivation Of E. C | 4e-55 | ||
| 2aat_A | 396 | 2.8-Angstroms-Resolution Crystal Structure Of An Ac | 5e-55 | ||
| 1aia_A | 396 | Structural Basis For The Catalytic Activity Of Aspa | 5e-55 | ||
| 4f5m_A | 406 | Wild-type E. Coli Aspartate Aminotransferase: A Tem | 5e-55 | ||
| 1g7w_A | 396 | Aspartate Aminotransferase Active Site Mutant N194a | 8e-55 | ||
| 1aam_A | 396 | The Structural Basis For The Altered Substrate Spec | 9e-55 | ||
| 1asb_A | 396 | The Structural Basis For The Reduced Activity Of Th | 9e-55 | ||
| 1arh_A | 396 | Aspartate Aminotransferase, Y225rR386A MUTANT Lengt | 1e-54 | ||
| 1ix8_A | 396 | Aspartate Aminotransferase Active Site Mutant V39fN | 2e-54 | ||
| 1g4v_A | 396 | Aspartate Aminotransferase Active Site Mutant N194a | 2e-54 | ||
| 4f5f_A | 406 | Structure Of Aspartate Aminotransferase Conversion | 4e-54 | ||
| 1bqa_A | 396 | Aspartate Aminotransferase P195a Mutant Length = 39 | 4e-54 | ||
| 1ahy_A | 396 | Aspartate Aminotransferase Hexamutant Length = 396 | 5e-54 | ||
| 1ari_A | 396 | Aspartate Aminotransferase, W140h Mutant, Maleate C | 5e-54 | ||
| 1g4x_A | 396 | Aspartate Aminotransferase Active Site Mutant N194a | 6e-54 | ||
| 1g7x_A | 396 | Aspartate Aminotransferase Active Site Mutant N194a | 7e-54 | ||
| 2d5y_A | 396 | Aspartate Aminotransferase Mutant Mc With Isovaleri | 2e-53 | ||
| 1toe_A | 396 | Unliganded Structure Of Hexamutant + A293d Mutant O | 3e-53 | ||
| 3zzj_A | 396 | Structure Of An Engineered Aspartate Aminotransfera | 3e-53 | ||
| 1bqd_A | 396 | Aspartate Aminotransferase P138aP195A DOUBLE MUTANT | 4e-53 | ||
| 2d61_A | 396 | Aspartate Aminotransferase Mutant Ma With Maleic Ac | 5e-53 | ||
| 1toj_A | 396 | Hydrocinnamic Acid-Bound Structure Of Srhept Mutant | 5e-53 | ||
| 4f5j_A | 406 | Rational Design And Directed Evolution For Conversi | 7e-53 | ||
| 1tog_A | 396 | Hydrocinnamic Acid-Bound Structure Of Srhept + A293 | 9e-53 | ||
| 4f5i_A | 406 | Substrate Specificity Conversion Of E. Coli Pyridox | 2e-52 | ||
| 2d66_A | 396 | Aspartate Aminotransferase Mutant Mab Length = 396 | 2e-52 | ||
| 4f5h_A | 406 | Intercoversion Of Substrate Specificity: E. Coli As | 3e-52 | ||
| 4f5g_A | 406 | Rational Design And Directed Evolution Of E. Coli A | 4e-52 | ||
| 4f5k_A | 406 | Substrate Specificity Conversion Of Aspartate Amino | 7e-52 | ||
| 1czc_A | 396 | Aspartate Aminotransferase Mutant Atb17139S142N WIT | 2e-51 | ||
| 2d64_A | 396 | Aspartate Aminotransferase Mutant Mabc With Isovale | 3e-51 | ||
| 1yoo_A | 396 | Aspartate Aminotransferase Mutant Atb17 With Isoval | 6e-51 | ||
| 1ay4_A | 394 | Aromatic Amino Acid Aminotransferase Without Substr | 1e-47 | ||
| 3uak_A | 406 | Crystal Structure Of De Novo Designed Cysteine Este | 4e-43 | ||
| 3k7y_A | 405 | Aspartate Aminotransferase Of Plasmodium Falciparum | 1e-36 | ||
| 3rq1_A | 418 | Crystal Structure Of Aminotransferase Class I And I | 2e-09 | ||
| 4emy_A | 413 | Crystal Structure Of Aminotransferase From Anaeroco | 3e-06 |
| >pdb|3PD6|A Chain A, Crystal Structure Of Mouse Mitochondrial Aspartate Aminotransferase, A Newly Identified Kynurenine Aminotransferase-Iv Length = 401 | Back alignment and structure |
|
| >pdb|3HLM|A Chain A, Crystal Structure Of Mouse Mitochondrial Aspartate AminotransferaseKYNURENINE AMINOTRANSFERASE IV Length = 401 | Back alignment and structure |
|
| >pdb|7AAT|A Chain A, X-Ray Structure Refinement And Comparison Of Three Forms Of Mitochondrial Aspartate Aminotransferase Length = 401 | Back alignment and structure |
|
| >pdb|1AKA|A Chain A, Structural Basis For The Catalytic Activity Of Aspartate Aminotransferase K258h Lacking Its Pyridoxal-5'-Phosphate-Binding Lysine Residue Length = 401 | Back alignment and structure |
|
| >pdb|1AJS|A Chain A, Refinement And Comparison Of The Crystal Structures Of Pig Cytosolic Aspartate Aminotransferase And Its Complex With 2-Methylaspartate Length = 412 | Back alignment and structure |
|
| >pdb|1AJR|A Chain A, Refinement And Comparison Of The Crystal Structures Of Pig Cytosolic Aspartate Aminotransferase And Its Complex With 2-Methylaspartate Length = 412 | Back alignment and structure |
|
| >pdb|3II0|A Chain A, Crystal Structure Of Human Glutamate Oxaloacetate Transaminase 1 (Got1) Length = 422 | Back alignment and structure |
|
| >pdb|2CST|A Chain A, Crystal Structure Of The Closed Form Of Chicken Cytosolic Aspartate Aminotransferase At 1.9 Angstroms Resolution Length = 411 | Back alignment and structure |
|
| >pdb|1AAT|A Chain A, Oxoglutarate-Induced Conformational Changes In Cytosolic Aspartate Aminotransferase Length = 411 | Back alignment and structure |
|
| >pdb|4EU1|A Chain A, Structure Of A Mitochondrial Aspartate Aminotransferase From Trypanosoma Brucei Length = 409 | Back alignment and structure |
|
| >pdb|1YAA|A Chain A, Aspartate Aminotransferase From Saccharomyces Cerevisiae Cytoplasm Length = 412 | Back alignment and structure |
|
| >pdb|3TAT|A Chain A, Tyrosine Aminotransferase From E. Coli Length = 397 | Back alignment and structure |
|
| >pdb|3FSL|A Chain A, Crystal Structure Of Tyrosine Aminotransferase Tripple Mutant (P181q, R183g,A321k) From Escherichia Coli At 2.35 A Resolution Length = 397 | Back alignment and structure |
|
| >pdb|4H51|A Chain A, Crystal Structure Of A Putative Aspartate Aminotransferase From Leishmania Major Friedlin Length = 420 | Back alignment and structure |
|
| >pdb|4F4E|A Chain A, Crystal Structure Of Aromatic-Amino-Acid Aminotransferase From Burkholderia Pseudomallei Covalently Bound To Pyridoxal Phosphate Length = 420 | Back alignment and structure |
|
| >pdb|4EFF|A Chain A, Crystal Structure Of Aromatic-Amino-Acid Aminotransferase From Burkholderia Pseudomallei Length = 420 | Back alignment and structure |
|
| >pdb|3MEB|A Chain A, Structure Of Cytoplasmic Aspartate Aminotransferase From Giardia Lamblia Length = 448 | Back alignment and structure |
|
| >pdb|1B4X|A Chain A, Aspartate Aminotransferase From E. Coli, C191s Mutation, With Bound Maleate Length = 396 | Back alignment and structure |
|
| >pdb|3AAT|A Chain A, Activity And Structure Of The Active-Site Mutants R386y And R386f Of Escherichia Coli Aspartate Aminotransferase Length = 396 | Back alignment and structure |
|
| >pdb|1ASL|A Chain A, Crystal Structures Of Escherichia Coli Aspartate Aminotransferase In Two Conformations: Comparison Of An Unliganded Open And Two Liganded Closed Forms Length = 396 | Back alignment and structure |
|
| >pdb|1QIR|A Chain A, Aspartate Aminotransferase From Escherichia Coli, C191y Mutation, With Bound Maleate Length = 396 | Back alignment and structure |
|
| >pdb|1QIT|A Chain A, Aspartate Aminotransferase From Escherichia Coli, C191w Mutation, With Bound Maleate Length = 396 | Back alignment and structure |
|
| >pdb|1QIS|A Chain A, Aspartate Aminotransferase From Escherichia Coli, C191f Mutation, With Bound Maleate Length = 396 | Back alignment and structure |
|
| >pdb|1IX6|A Chain A, Aspartate Aminotransferase Active Site Mutant V39f Length = 396 | Back alignment and structure |
|
| >pdb|1ASF|A Chain A, The Structural Basis For The Reduced Activity Of The Y226f(Y225f) Active Site Mutant Of E. Coli Aspartate Aminotransferase Length = 396 | Back alignment and structure |
|
| >pdb|2Q7W|A Chain A, Structural Studies Reveals The Inactivation Of E. Coli L-Aspartate Aminotransferase (S)-4,5-Amino-Dihydro-2-Thiophenecarboxylic Acid (Sadta) Via Two Mechanisms At Ph 6.0 Length = 396 | Back alignment and structure |
|
| >pdb|2AAT|A Chain A, 2.8-Angstroms-Resolution Crystal Structure Of An Active-Site Mutant Of Aspartate Aminotransferase From Escherichia Coli Length = 396 | Back alignment and structure |
|
| >pdb|1AIA|A Chain A, Structural Basis For The Catalytic Activity Of Aspartate Aminotransferase K258h Lacking The Pyridoxal-5'-Phosphate Binding Lysine Residue Length = 396 | Back alignment and structure |
|
| >pdb|4F5M|A Chain A, Wild-type E. Coli Aspartate Aminotransferase: A Template For The Interconversion Of Substrate Specificity And Activity To Tyrosine Aminotransferase By The Janus Algorithm. Length = 406 | Back alignment and structure |
|
| >pdb|1G7W|A Chain A, Aspartate Aminotransferase Active Site Mutant N194aR386L Length = 396 | Back alignment and structure |
|
| >pdb|1AAM|A Chain A, The Structural Basis For The Altered Substrate Specificity Of The R292d Active Site Mutant Of Aspartate Aminotransferase From E. Coli Length = 396 | Back alignment and structure |
|
| >pdb|1ASB|A Chain A, The Structural Basis For The Reduced Activity Of The D223a(D222a) Active Site Mutant Of E. Coli Aspartate Aminotransferase Length = 396 | Back alignment and structure |
|
| >pdb|1ARH|A Chain A, Aspartate Aminotransferase, Y225rR386A MUTANT Length = 396 | Back alignment and structure |
|
| >pdb|1IX8|A Chain A, Aspartate Aminotransferase Active Site Mutant V39fN194A Length = 396 | Back alignment and structure |
|
| >pdb|1G4V|A Chain A, Aspartate Aminotransferase Active Site Mutant N194a/y225f Length = 396 | Back alignment and structure |
|
| >pdb|4F5F|A Chain A, Structure Of Aspartate Aminotransferase Conversion To Tyrosine Aminotransferase: Chimera P1. Length = 406 | Back alignment and structure |
|
| >pdb|1BQA|A Chain A, Aspartate Aminotransferase P195a Mutant Length = 396 | Back alignment and structure |
|
| >pdb|1AHY|A Chain A, Aspartate Aminotransferase Hexamutant Length = 396 | Back alignment and structure |
|
| >pdb|1ARI|A Chain A, Aspartate Aminotransferase, W140h Mutant, Maleate Complex Length = 396 | Back alignment and structure |
|
| >pdb|1G4X|A Chain A, Aspartate Aminotransferase Active Site Mutant N194aR292L Length = 396 | Back alignment and structure |
|
| >pdb|1G7X|A Chain A, Aspartate Aminotransferase Active Site Mutant N194aR292LR386L Length = 396 | Back alignment and structure |
|
| >pdb|2D5Y|A Chain A, Aspartate Aminotransferase Mutant Mc With Isovaleric Acid Length = 396 | Back alignment and structure |
|
| >pdb|1TOE|A Chain A, Unliganded Structure Of Hexamutant + A293d Mutant Of E. Coli Aspartate Aminotransferase Length = 396 | Back alignment and structure |
|
| >pdb|3ZZJ|A Chain A, Structure Of An Engineered Aspartate Aminotransferase Length = 396 | Back alignment and structure |
|
| >pdb|1BQD|A Chain A, Aspartate Aminotransferase P138aP195A DOUBLE MUTANT Length = 396 | Back alignment and structure |
|
| >pdb|2D61|A Chain A, Aspartate Aminotransferase Mutant Ma With Maleic Acid Length = 396 | Back alignment and structure |
|
| >pdb|1TOJ|A Chain A, Hydrocinnamic Acid-Bound Structure Of Srhept Mutant Of E. Coli Aspartate Aminotransferase Length = 396 | Back alignment and structure |
|
| >pdb|4F5J|A Chain A, Rational Design And Directed Evolution For Conversion Of Substrate Specificity From E.coli Aspartate Aminotransferase To Tyrosine Aminotransferase: Mutant P5. Length = 406 | Back alignment and structure |
|
| >pdb|1TOG|A Chain A, Hydrocinnamic Acid-Bound Structure Of Srhept + A293d Mutant Of E. Coli Aspartate Aminotransferase Length = 396 | Back alignment and structure |
|
| >pdb|4F5I|A Chain A, Substrate Specificity Conversion Of E. Coli Pyridoxal-5'-phosphate Dependent Aspartate Aminotransferase To Tyrosine Aminotransferase: Chimera P4. Length = 406 | Back alignment and structure |
|
| >pdb|2D66|A Chain A, Aspartate Aminotransferase Mutant Mab Length = 396 | Back alignment and structure |
|
| >pdb|4F5H|A Chain A, Intercoversion Of Substrate Specificity: E. Coli Aspatate Aminotransferase To Tyrosine Aminotransferase: Chimera P3. Length = 406 | Back alignment and structure |
|
| >pdb|4F5G|A Chain A, Rational Design And Directed Evolution Of E. Coli Apartate Aminotransferase To Tyrosine Aminotransferase: Mutant P2. Length = 406 | Back alignment and structure |
|
| >pdb|4F5K|A Chain A, Substrate Specificity Conversion Of Aspartate Aminotransferase To Tyrosine Aminotransferase By The Janus Algorithm: Chimera P6. Length = 406 | Back alignment and structure |
|
| >pdb|1CZC|A Chain A, Aspartate Aminotransferase Mutant Atb17139S142N WITH GLUTARIC ACID Length = 396 | Back alignment and structure |
|
| >pdb|2D64|A Chain A, Aspartate Aminotransferase Mutant Mabc With Isovaleric Acid Length = 396 | Back alignment and structure |
|
| >pdb|1YOO|A Chain A, Aspartate Aminotransferase Mutant Atb17 With Isovaleric Acid Length = 396 | Back alignment and structure |
|
| >pdb|1AY4|A Chain A, Aromatic Amino Acid Aminotransferase Without Substrate Length = 394 | Back alignment and structure |
|
| >pdb|3UAK|A Chain A, Crystal Structure Of De Novo Designed Cysteine Esterase Ech14, Northeast Structural Genomics Consortium Target Or54 Length = 406 | Back alignment and structure |
|
| >pdb|3K7Y|A Chain A, Aspartate Aminotransferase Of Plasmodium Falciparum Length = 405 | Back alignment and structure |
|
| >pdb|3RQ1|A Chain A, Crystal Structure Of Aminotransferase Class I And Ii From Veillonella Parvula Length = 418 | Back alignment and structure |
|
| >pdb|4EMY|A Chain A, Crystal Structure Of Aminotransferase From Anaerococcus Prevotii Dsm 20548. Length = 413 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 583 | |||
| 7aat_A | 401 | Aspartate aminotransferase; transferase(aminotrans | 0.0 | |
| 7aat_A | 401 | Aspartate aminotransferase; transferase(aminotrans | 7e-25 | |
| 7aat_A | 401 | Aspartate aminotransferase; transferase(aminotrans | 8e-25 | |
| 4eu1_A | 409 | Mitochondrial aspartate aminotransferase; ssgcid, | 1e-180 | |
| 4eu1_A | 409 | Mitochondrial aspartate aminotransferase; ssgcid, | 3e-25 | |
| 4eu1_A | 409 | Mitochondrial aspartate aminotransferase; ssgcid, | 4e-25 | |
| 3k7y_A | 405 | Aspartate aminotransferase; aminotrans pyridoxal p | 1e-179 | |
| 3k7y_A | 405 | Aspartate aminotransferase; aminotrans pyridoxal p | 6e-23 | |
| 3k7y_A | 405 | Aspartate aminotransferase; aminotrans pyridoxal p | 7e-23 | |
| 4f4e_A | 420 | Aromatic-amino-acid aminotransferase; ssgcid, stru | 1e-179 | |
| 4f4e_A | 420 | Aromatic-amino-acid aminotransferase; ssgcid, stru | 2e-23 | |
| 4f4e_A | 420 | Aromatic-amino-acid aminotransferase; ssgcid, stru | 2e-23 | |
| 3fsl_A | 397 | Aromatic-amino-acid aminotransferase; tyrosine ami | 1e-177 | |
| 3fsl_A | 397 | Aromatic-amino-acid aminotransferase; tyrosine ami | 9e-24 | |
| 3fsl_A | 397 | Aromatic-amino-acid aminotransferase; tyrosine ami | 1e-23 | |
| 1yaa_A | 412 | Aspartate aminotransferase; HET: PLP; 2.05A {Sacch | 1e-177 | |
| 1yaa_A | 412 | Aspartate aminotransferase; HET: PLP; 2.05A {Sacch | 6e-23 | |
| 1yaa_A | 412 | Aspartate aminotransferase; HET: PLP; 2.05A {Sacch | 7e-23 | |
| 2ay1_A | 394 | Aroat, aromatic amino acid aminotransferase; HET: | 1e-176 | |
| 2ay1_A | 394 | Aroat, aromatic amino acid aminotransferase; HET: | 1e-23 | |
| 2ay1_A | 394 | Aroat, aromatic amino acid aminotransferase; HET: | 2e-23 | |
| 1ajs_A | 412 | Aspartate aminotransferase; PIG, in the presence o | 1e-176 | |
| 1ajs_A | 412 | Aspartate aminotransferase; PIG, in the presence o | 2e-20 | |
| 1ajs_A | 412 | Aspartate aminotransferase; PIG, in the presence o | 2e-20 | |
| 2q7w_A | 396 | Aspartate aminotransferase; mechanism-based inhibi | 1e-176 | |
| 2q7w_A | 396 | Aspartate aminotransferase; mechanism-based inhibi | 1e-23 | |
| 2q7w_A | 396 | Aspartate aminotransferase; mechanism-based inhibi | 1e-23 | |
| 3meb_A | 448 | Aspartate aminotransferase; pyridoxal PHOS transfe | 1e-172 | |
| 3meb_A | 448 | Aspartate aminotransferase; pyridoxal PHOS transfe | 2e-19 | |
| 3meb_A | 448 | Aspartate aminotransferase; pyridoxal PHOS transfe | 2e-19 | |
| 3rq1_A | 418 | Aminotransferase class I and II; structural genomi | 1e-153 | |
| 3rq1_A | 418 | Aminotransferase class I and II; structural genomi | 3e-18 | |
| 3rq1_A | 418 | Aminotransferase class I and II; structural genomi | 4e-18 | |
| 3t18_A | 413 | Aminotransferase class I and II; PSI-biology, MCSG | 1e-147 | |
| 3t18_A | 413 | Aminotransferase class I and II; PSI-biology, MCSG | 1e-16 | |
| 3t18_A | 413 | Aminotransferase class I and II; PSI-biology, MCSG | 4e-16 | |
| 2x5f_A | 430 | Aspartate_tyrosine_phenylalanine pyridoxal-5' phos | 1e-108 | |
| 2x5f_A | 430 | Aspartate_tyrosine_phenylalanine pyridoxal-5' phos | 3e-11 | |
| 2x5f_A | 430 | Aspartate_tyrosine_phenylalanine pyridoxal-5' phos | 2e-10 | |
| 3ftb_A | 361 | Histidinol-phosphate aminotransferase; structural | 1e-06 | |
| 1fg7_A | 356 | Histidinol phosphate aminotransferase; HISC, histi | 7e-06 | |
| 3ei9_A | 432 | LL-diaminopimelate aminotransferase; lysine biosyn | 1e-05 | |
| 3cq5_A | 369 | Histidinol-phosphate aminotransferase; PLP, PMP, a | 1e-05 | |
| 1lc5_A | 364 | COBD, L-threonine-O-3-phosphate decarboxylase; PLP | 2e-05 | |
| 3if2_A | 444 | Aminotransferase; YP_265399.1, structura genomics, | 3e-05 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 5e-05 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 9e-05 | |
| 3hdo_A | 360 | Histidinol-phosphate aminotransferase; PSI-II, his | 3e-04 | |
| 3b40_A | 417 | PVDM, probable dipeptidase; structural genomics, h | 6e-04 | |
| 2dou_A | 376 | Probable N-succinyldiaminopimelate aminotransfera; | 7e-04 | |
| 3qgu_A | 449 | LL-diaminopimelate aminotransferase; L-lysine, pyr | 7e-04 | |
| 3fkd_A | 350 | L-threonine-O-3-phosphate decarboxylase; structura | 8e-04 |
| >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* Length = 401 | Back alignment and structure |
|---|
Score = 523 bits (1350), Expect = 0.0
Identities = 179/382 (46%), Positives = 241/382 (63%), Gaps = 42/382 (10%)
Query: 157 FNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAA 216
F +D + KKMNLGVGAYR ++GKPYVL V++AE I K +D EY I G A F + +A
Sbjct: 22 FKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASA 81
Query: 217 QLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCT 276
+LA GE+ AFK R VQGISG+GSLRVG FL+RF+ + VY P P+W H
Sbjct: 82 ELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFR 141
Query: 277 DSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLA 336
D+ L + AYRY+D KT LDF G MEDI +PE+SI+ L +HNPTGVD ++QW++LA
Sbjct: 142 DAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELA 201
Query: 337 VVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGT 396
VVK+R+L +FDMAY G SGD ++DA++LR+F ++ + L+QS++KNMGLYGER G
Sbjct: 202 SVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMGLYGERAGA 261
Query: 397 FSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQL 456
F+V+ + +E +R+ SQL
Sbjct: 262 FTVICRDA------------------------------------------EEAKRVESQL 279
Query: 457 KILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSK 516
KILIR YSNPP++GARI + IL+ P+L+ +W E KGM++RI S+R +L S + +GS
Sbjct: 280 KILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSS 339
Query: 517 KNWDHITNQKGMFCYTGLSASQ 538
NW HIT+Q GMFC+TGL Q
Sbjct: 340 HNWQHITDQIGMFCFTGLKPEQ 361
|
| >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* Length = 401 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 7e-25
Identities = 39/76 (51%), Positives = 47/76 (61%)
Query: 1 LAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNK 60
VQGISG+GSLRVG FL+RF+ + VY P P+W H D+ L + AYRY+D K
Sbjct: 97 YVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPK 156
Query: 61 TNGLDFAGMMEDIKLA 76
T LDF G MEDI
Sbjct: 157 TCSLDFTGAMEDISKI 172
|
| >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* Length = 401 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 8e-25
Identities = 39/75 (52%), Positives = 48/75 (64%)
Query: 74 KLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDN 133
+ VQGISG+GSLRVG FL+RF+ + VY P P+W H D+ L + AYRY+D
Sbjct: 96 RYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDP 155
Query: 134 KTNGLDFAGMMEDIK 148
KT LDF G MEDI
Sbjct: 156 KTCSLDFTGAMEDIS 170
|
| >4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} Length = 409 | Back alignment and structure |
|---|
Score = 514 bits (1326), Expect = e-180
Identities = 139/382 (36%), Positives = 202/382 (52%), Gaps = 47/382 (12%)
Query: 157 FNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAA 216
F DP +K+NL +G YR + +P+VL VK+A + +YA + G A F + A
Sbjct: 35 FRMDPAKRKVNLSIGVYRDDADQPFVLECVKQAT-----LGTNMDYAPVTGIASFVEEAQ 89
Query: 217 QLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCT 276
+L +G A +D R+A Q + G+G+LR+G L RF +Y P + H
Sbjct: 90 KLCFGPTCAALRDGRIASCQTLGGTGALRIGGDLLNRFVANCNRIYGPDVGYPNHESIFA 149
Query: 277 DSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLA 336
+ + + Y Y+D T GL+ AGM+E + PE S++ + +HNPTGVD + D WRQ+
Sbjct: 150 KAGMELTPYSYYDPATKGLNLAGMLECLDKAPEGSVILVHACAHNPTGVDPTHDDWRQVC 209
Query: 337 VVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGT 396
V+K+R+ PF DMAY G +G D DAF R+ V L +AQSFSKN GLYG R G
Sbjct: 210 DVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVPNLIVAQSFSKNFGLYGHRCGA 269
Query: 397 FSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQL 456
+ T ++ +E +R++SQL
Sbjct: 270 LHISTASA------------------------------------------EEAKRLVSQL 287
Query: 457 KILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSK 516
+LIR Y+NPP++GA +V+ IL DP+L A W +E K MS+RI+ +R+ L S++ GS
Sbjct: 288 ALLIRPMYNNPPLYGAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKRLVSELKACGSV 347
Query: 517 KNWDHITNQKGMFCYTGLSASQ 538
+W HI Q GM YTGL+ Q
Sbjct: 348 HDWSHIERQVGMMAYTGLTREQ 369
|
| >4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} Length = 409 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 3e-25
Identities = 24/76 (31%), Positives = 38/76 (50%)
Query: 1 LAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNK 60
+A Q + G+G+LR+G L RF +Y P + H + + + Y Y+D
Sbjct: 105 IASCQTLGGTGALRIGGDLLNRFVANCNRIYGPDVGYPNHESIFAKAGMELTPYSYYDPA 164
Query: 61 TNGLDFAGMMEDIKLA 76
T GL+ AGM+E + A
Sbjct: 165 TKGLNLAGMLECLDKA 180
|
| >4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} Length = 409 | Back alignment and structure |
|---|
Score = 106 bits (268), Expect = 4e-25
Identities = 23/75 (30%), Positives = 38/75 (50%)
Query: 74 KLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDN 133
++A Q + G+G+LR+G L RF +Y P + H + + + Y Y+D
Sbjct: 104 RIASCQTLGGTGALRIGGDLLNRFVANCNRIYGPDVGYPNHESIFAKAGMELTPYSYYDP 163
Query: 134 KTNGLDFAGMMEDIK 148
T GL+ AGM+E +
Sbjct: 164 ATKGLNLAGMLECLD 178
|
| >3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} Length = 405 | Back alignment and structure |
|---|
Score = 511 bits (1319), Expect = e-179
Identities = 93/386 (24%), Positives = 169/386 (43%), Gaps = 48/386 (12%)
Query: 157 FNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAA 216
F +D +K+NL +G +DG ++ SV A++ + E + Y G F L
Sbjct: 23 FKEDTCEEKINLSIGVCCNDDGDLHIFDSVLNADKLVTENYKEKPYLLGNGTEDFSTLTQ 82
Query: 217 QLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCT 276
L +G + +D ++ +Q I G+G++ V FL+ +T+Y P + HV
Sbjct: 83 NLIFGNNSKYIEDKKICTIQCIGGTGAIFVLLEFLKMLNV--ETLYVTNPPYINHVNMIE 140
Query: 277 DSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLA 336
N+ +FD +++ + D++ +P S + LQ S +NP V++ E + ++
Sbjct: 141 SRGFNLKYINFFDYNLIDINYDLFLNDLRNIPNGSSVILQISCYNPCSVNIEEKYFDEII 200
Query: 337 VVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGT 396
+V + FD+AY G + ++D +R F ++ + QSFSKNM LYGER G
Sbjct: 201 EIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKNIAFSVCQSFSKNMSLYGERAGA 260
Query: 397 FSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQL 456
++ +E + + + L
Sbjct: 261 LHIVCKNQ------------------------------------------EEKKIVFNNL 278
Query: 457 KILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIR----EELKSKILD 512
++R FYS+P IH RI+ ++L++ LK W +E +S RI++ R +L++
Sbjct: 279 CFIVRKFYSSPVIHTNRILCQLLNNQNLKLNWIKELSQLSQRITNNRILFFNKLETYQKK 338
Query: 513 KGSKKNWDHITNQKGMFCYTGLSASQ 538
+W+ Q+G+F + L A
Sbjct: 339 YNLNYDWNVYKKQRGLFSFVPLLAKI 364
|
| >3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} Length = 405 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 6e-23
Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Query: 1 LAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNK 60
+ +Q I G+G++ V FL+ +T+Y P + HV N+ +FD
Sbjct: 98 ICTIQCIGGTGAIFVLLEFLKMLNV--ETLYVTNPPYINHVNMIESRGFNLKYINFFDYN 155
Query: 61 TNGLDFAGMMEDIKLA 76
+++ + D++
Sbjct: 156 LIDINYDLFLNDLRNI 171
|
| >3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} Length = 405 | Back alignment and structure |
|---|
Score = 99 bits (250), Expect = 7e-23
Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Query: 74 KLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDN 133
K+ +Q I G+G++ V FL+ +T+Y P + HV N+ +FD
Sbjct: 97 KICTIQCIGGTGAIFVLLEFLKMLNV--ETLYVTNPPYINHVNMIESRGFNLKYINFFDY 154
Query: 134 KTNGLDFAGMMEDIK 148
+++ + D++
Sbjct: 155 NLIDINYDLFLNDLR 169
|
| >4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* Length = 420 | Back alignment and structure |
|---|
Score = 511 bits (1318), Expect = e-179
Identities = 135/382 (35%), Positives = 195/382 (51%), Gaps = 44/382 (11%)
Query: 157 FNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAA 216
FN D P K+NLGVG Y EDGK +L +V++AE+ E L Y I G A +
Sbjct: 43 FNADTRPTKVNLGVGVYTNEDGKIPLLRAVRDAEKARVEAGLPRGYLPIDGIAAYDASVQ 102
Query: 217 QLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCT 276
+L G+D P R+ Q + G+G+L++G FL P V P+W H
Sbjct: 103 KLLLGDDSPLIAAGRVVTAQALGGTGALKIGADFLRTLNPK-AKVAISDPSWENHRALFD 161
Query: 277 DSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLA 336
+ V AY Y+D KTNG++F GM+ + +I+ L HNPTGVDL++ QW Q+
Sbjct: 162 MAGFEVVAYPYYDAKTNGVNFDGMLAALNGYEPGTIVVLHACCHNPTGVDLNDAQWAQVV 221
Query: 337 VVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGT 396
VVK R L PF D+AY G + DA ++R FA + ++ SFSK+ LYGERVG
Sbjct: 222 EVVKARRLVPFLDIAYQGFGES-IEADAAAVRLFAAANLNVFVSSSFSKSFSLYGERVGA 280
Query: 397 FSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQL 456
S++T + DE R++SQL
Sbjct: 281 LSIITDSK------------------------------------------DEAARVLSQL 298
Query: 457 KILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSK 516
K +IR YSNPP HG IV +L+ P+L+A W +E M +RI ++R L ++ G +
Sbjct: 299 KRVIRTNYSNPPTHGGAIVAAVLASPELRASWVQELGEMRDRIRAMRNGLVERLKAAGIE 358
Query: 517 KNWDHITNQKGMFCYTGLSASQ 538
+++ I Q+GMF Y+GL+++Q
Sbjct: 359 RDFSFINAQRGMFSYSGLTSAQ 380
|
| >4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* Length = 420 | Back alignment and structure |
|---|
Score = 101 bits (255), Expect = 2e-23
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 1 LAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNK 60
+ Q + G+G+L++G FL P V P+W H + V AY Y+D K
Sbjct: 118 VVTAQALGGTGALKIGADFLRTLNPK-AKVAISDPSWENHRALFDMAGFEVVAYPYYDAK 176
Query: 61 TNGLDFAGMMEDIKLA 76
TNG++F GM+ +
Sbjct: 177 TNGVNFDGMLAALNGY 192
|
| >4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* Length = 420 | Back alignment and structure |
|---|
Score = 101 bits (255), Expect = 2e-23
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 74 KLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDN 133
++ Q + G+G+L++G FL P V P+W H + V AY Y+D
Sbjct: 117 RVVTAQALGGTGALKIGADFLRTLNPK-AKVAISDPSWENHRALFDMAGFEVVAYPYYDA 175
Query: 134 KTNGLDFAGMMEDIK 148
KTNG++F GM+ +
Sbjct: 176 KTNGVNFDGMLAALN 190
|
| >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} PDB: 3tat_A* Length = 397 | Back alignment and structure |
|---|
Score = 507 bits (1307), Expect = e-177
Identities = 131/383 (34%), Positives = 197/383 (51%), Gaps = 45/383 (11%)
Query: 157 FNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIY-EKNLDHEYANIGGDAKFCKLA 215
F +DP K+NL +G Y EDG L +V EAE R+ + + Y + G +
Sbjct: 20 FKEDPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAI 79
Query: 216 AQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFC 275
A L +G D P K R+A +Q + GSG+L+VG FL+R++P V+ PTW HV
Sbjct: 80 APLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPE-SGVWVSDPTWENHVAIF 138
Query: 276 TDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQL 335
+ V Y ++D TNG+ F ++ +K + SI+ L HNPTG DL+ DQW +
Sbjct: 139 AGAGFEVSTYPWYDEATNGVRFNDLLATLKTLQAGSIVLLHPCCHNPTGADLTNDQWDAV 198
Query: 336 AVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVG 395
++K R L PF D+AY G +G ++DA+++R A ++ SFSK LYGERVG
Sbjct: 199 IEILKARELIPFLDIAYQGFGAG-MEEDAYAIRAIASAGLPALVSNSFSKIFSLYGERVG 257
Query: 396 TFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQ 455
SV+ + + R++ Q
Sbjct: 258 GLSVMCEDA------------------------------------------EAAGRVLGQ 275
Query: 456 LKILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGS 515
LK +R YS+PP GA++V +L+D LKA W +E + M RI ++R+EL + +
Sbjct: 276 LKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAMRQELVKVLSTEMP 335
Query: 516 KKNWDHITNQKGMFCYTGLSASQ 538
++N+D++ NQ+GMF YTGLSA+Q
Sbjct: 336 ERNFDYLLNQRGMFSYTGLSAAQ 358
|
| >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} PDB: 3tat_A* Length = 397 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 9e-24
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 1 LAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNK 60
+A +Q + GSG+L+VG FL+R++P V+ PTW HV + V Y ++D
Sbjct: 96 VATIQTLGGSGALKVGADFLKRYFPE-SGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEA 154
Query: 61 TNGLDFAGMMEDIKLA 76
TNG+ F ++ +K
Sbjct: 155 TNGVRFNDLLATLKTL 170
|
| >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} PDB: 3tat_A* Length = 397 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 1e-23
Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 74 KLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDN 133
++A +Q + GSG+L+VG FL+R++P V+ PTW HV + V Y ++D
Sbjct: 95 RVATIQTLGGSGALKVGADFLKRYFPE-SGVWVSDPTWENHVAIFAGAGFEVSTYPWYDE 153
Query: 134 KTNGLDFAGMMEDIK 148
TNG+ F ++ +K
Sbjct: 154 ATNGVRFNDLLATLK 168
|
| >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 Length = 412 | Back alignment and structure |
|---|
Score = 506 bits (1306), Expect = e-177
Identities = 132/386 (34%), Positives = 205/386 (53%), Gaps = 43/386 (11%)
Query: 157 FNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIY-EKNLDHEYANIGGDAKFCKLA 215
+ +D K++LG+GAYR ++GKP+VLPSVK AE+ I+ + + +HEY I G A
Sbjct: 23 YGQDQRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNA 82
Query: 216 AQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFC 275
A++ +G A +++R+ VQ +SG+G+L + F +F+P K VY PTW H+
Sbjct: 83 AKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFPD-KLVYLSKPTWANHMAIF 141
Query: 276 TDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQL 335
+ L Y Y+ N+T LD G + I+ PE SI L + +HNPTG+D + +QW Q+
Sbjct: 142 ENQGLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQI 201
Query: 336 AVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQ---LCLAQSFSKNMGLYGE 392
+ ++ FD AY G +GD DKDA+++R +++ + + QSF+KN G+YGE
Sbjct: 202 VDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGE 261
Query: 393 RVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERI 452
RVG F + + + +
Sbjct: 262 RVGCFHLALTKQAQNK--------------------------------------TIKPAV 283
Query: 453 MSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILD 512
SQL +IR SNPP +GA+IV ++L P+L QW ++ MS+RI+ +R L+ ++
Sbjct: 284 TSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVK 343
Query: 513 KGSKKNWDHITNQKGMFCYTGLSASQ 538
G+ NWDHI NQ GMF +TGL+
Sbjct: 344 LGTPGNWDHIVNQCGMFSFTGLTPQM 369
|
| >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 Length = 412 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 6e-23
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 1 LAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNK 60
+ VQ +SG+G+L + F +F+P K VY PTW H+ + L Y Y+ N+
Sbjct: 99 VISVQSLSGTGALHISAKFFSKFFPD-KLVYLSKPTWANHMAIFENQGLKTATYPYWANE 157
Query: 61 TNGLDFAGMMEDIKLA 76
T LD G + I+ A
Sbjct: 158 TKSLDLNGFLNAIQKA 173
|
| >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 Length = 412 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 7e-23
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 74 KLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDN 133
++ VQ +SG+G+L + F +F+P K VY PTW H+ + L Y Y+ N
Sbjct: 98 RVISVQSLSGTGALHISAKFFSKFFPD-KLVYLSKPTWANHMAIFENQGLKTATYPYWAN 156
Query: 134 KTNGLDFAGMMEDIK 148
+T LD G + I+
Sbjct: 157 ETKSLDLNGFLNAIQ 171
|
| >2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* Length = 394 | Back alignment and structure |
|---|
Score = 502 bits (1296), Expect = e-176
Identities = 109/382 (28%), Positives = 169/382 (44%), Gaps = 47/382 (12%)
Query: 157 FNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAA 216
F DP K++LGVG Y+ G ++ +V AE+R+ E YA + G+ +F K
Sbjct: 20 FRADPRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMG 79
Query: 217 QLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCT 276
+L G+ K A + + G+G+LR P V+ PTW HV
Sbjct: 80 ELILGD---GLKSETTATLATVGGTGALRQALELARMANPD-LRVFVSDPTWPNHVSIMN 135
Query: 277 DSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLA 336
L V YRYFD +T G+DF GM D+ A + ++ L HNPTG +L+ DQW ++A
Sbjct: 136 FMGLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIA 195
Query: 337 VVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGT 396
++++ P D+AY G G ++DA R A + ++ +A S SKN G+Y ER G
Sbjct: 196 SILEKTGALPLIDLAYQGFGDG-LEEDAAGTRLIASRIPEVLIAASCSKNFGIYRERTGC 254
Query: 397 FSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQL 456
L + E +
Sbjct: 255 LLALCADA------------------------------------------ATRELAQGAM 272
Query: 457 KILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSK 516
L R YS PP HGA+IV+ +L+ P+L+A W E + + + + +RE+L ++ D
Sbjct: 273 AFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRDLSGS 332
Query: 517 KNWDHITNQKGMFCYTGLSASQ 538
+ + +GMF G + Q
Sbjct: 333 DRFGFVAEHRGMFSRLGATPEQ 354
|
| >2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* Length = 394 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 1e-23
Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 1/92 (1%)
Query: 57 FDNKTNGLDFAGMMEDIKLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVR 116
F L ++ A + + G+G+LR P V+ PTW HV
Sbjct: 74 FQKAMGELILGDGLKSETTATLATVGGTGALRQALELARMANPD-LRVFVSDPTWPNHVS 132
Query: 117 FCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIK 148
L V YRYFD +T G+DF GM D+
Sbjct: 133 IMNFMGLPVQTYRYFDAETRGVDFEGMKADLA 164
|
| >2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* Length = 394 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 2e-23
Identities = 27/76 (35%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 1 LAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNK 60
A + + G+G+LR P V+ PTW HV L V YRYFD +
Sbjct: 92 TATLATVGGTGALRQALELARMANPD-LRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAE 150
Query: 61 TNGLDFAGMMEDIKLA 76
T G+DF GM D+ A
Sbjct: 151 TRGVDFEGMKADLAAA 166
|
| >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* Length = 412 | Back alignment and structure |
|---|
Score = 503 bits (1298), Expect = e-176
Identities = 157/388 (40%), Positives = 227/388 (58%), Gaps = 48/388 (12%)
Query: 157 FNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEK-NLDHEYANIGGDAKFCKLA 215
F +DP P+K+NLGVGAYR +D +P+VLP V++ E+RI +L+HEY I G A+F A
Sbjct: 24 FREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFRTCA 83
Query: 216 AQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGV----KTVYFPTPTWNGH 271
++LA G+D PA ++ R+ VQ + G+G+LR+G FL R+Y G VY +PTW H
Sbjct: 84 SRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENH 143
Query: 272 VRFCTDSRL-NVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSED 330
T + ++ +YRY+D + GLD G + D++ PE SI L +HNPTG D + +
Sbjct: 144 NGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPE 203
Query: 331 QWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLY 390
QW+Q+A V+K+R L+PFFD AY G SG+ +KDA+++RYF E +L AQSFSKN GLY
Sbjct: 204 QWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLY 263
Query: 391 GERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETE 450
ERVG +V+ D
Sbjct: 264 NERVGNLTVVAKEP------------------------------------------DSIL 281
Query: 451 RIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKI 510
R++SQ++ ++R +SNPP GARIV LSDP+L +W K M++RI S+R EL++++
Sbjct: 282 RVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARL 341
Query: 511 LDKGSKKNWDHITNQKGMFCYTGLSASQ 538
+ W+HIT+Q GMF +TGL+ Q
Sbjct: 342 EALKTPGTWNHITDQIGMFSFTGLNPKQ 369
|
| >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* Length = 412 | Back alignment and structure |
|---|
Score = 93.1 bits (232), Expect = 2e-20
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Query: 2 AIVQGISGSGSLRVGTAFLERFYPGV----KTVYFPTPTWNGHVRFCTDSRL-NVGAYRY 56
VQ + G+G+LR+G FL R+Y G VY +PTW H T + ++ +YRY
Sbjct: 101 GGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRY 160
Query: 57 FDNKTNGLDFAGMMEDIKLA 76
+D + GLD G + D++ A
Sbjct: 161 WDTEKRGLDLQGFLSDLENA 180
|
| >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* Length = 412 | Back alignment and structure |
|---|
Score = 92.7 bits (231), Expect = 2e-20
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Query: 74 KLAIVQGISGSGSLRVGTAFLERFYPGV----KTVYFPTPTWNGHVRFCTDSRL-NVGAY 128
++ VQ + G+G+LR+G FL R+Y G VY +PTW H T + ++ +Y
Sbjct: 99 RVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSY 158
Query: 129 RYFDNKTNGLDFAGMMEDIK 148
RY+D + GLD G + D++
Sbjct: 159 RYWDTEKRGLDLQGFLSDLE 178
|
| >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... Length = 396 | Back alignment and structure |
|---|
Score = 502 bits (1296), Expect = e-176
Identities = 121/382 (31%), Positives = 180/382 (47%), Gaps = 44/382 (11%)
Query: 157 FNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAA 216
F D P K+NLG+G Y+ E GK VL SVK+AE+ + E Y I G +F +
Sbjct: 20 FRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQ 79
Query: 217 QLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCT 276
+L +G+ D R Q G+G+LRV FL + K V+ P+W H
Sbjct: 80 ELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSV-KRVWVSNPSWPNHKSVFN 138
Query: 277 DSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLA 336
+ L V Y Y+D + + LDF ++ + ++ HNPTG+D + +QW+ LA
Sbjct: 139 SAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLA 198
Query: 337 VVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGT 396
+ ++ P FD AY G G ++DA LR FA +L +A S+S N GLY ERVG
Sbjct: 199 QLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIVASSYSXNFGLYNERVGA 257
Query: 397 FSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQL 456
+++ S + +R SQ+
Sbjct: 258 CTLVAADS------------------------------------------ETVDRAFSQM 275
Query: 457 KILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSK 516
K IR YSNPP HGA +V ILS+ L+A W +E M RI +R+ + + +KG+
Sbjct: 276 KAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGAN 335
Query: 517 KNWDHITNQKGMFCYTGLSASQ 538
+++ I Q GMF ++GL+ Q
Sbjct: 336 RDFSFIIKQNGMFSFSGLTKEQ 357
|
| >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... Length = 396 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 1e-23
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 1 LAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNK 60
Q G+G+LRV FL + K V+ P+W H + L V Y Y+D +
Sbjct: 95 ARTAQTPGGTGALRVAADFLAKNTSV-KRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAE 153
Query: 61 TNGLDFAGMMEDIKLA 76
+ LDF ++ + A
Sbjct: 154 NHTLDFDALINSLNEA 169
|
| >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... Length = 396 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 1e-23
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 74 KLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDN 133
+ Q G+G+LRV FL + K V+ P+W H + L V Y Y+D
Sbjct: 94 RARTAQTPGGTGALRVAADFLAKNTSV-KRVWVSNPSWPNHKSVFNSAGLEVREYAYYDA 152
Query: 134 KTNGLDFAGMMEDIK 148
+ + LDF ++ +
Sbjct: 153 ENHTLDFDALINSLN 167
|
| >3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} Length = 448 | Back alignment and structure |
|---|
Score = 495 bits (1277), Expect = e-172
Identities = 132/394 (33%), Positives = 200/394 (50%), Gaps = 47/394 (11%)
Query: 157 FNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYE--KNLDHEYANIGGDAKFCKL 214
+N D +PKK+NLGVGAYR E GKP++LP+VKEAE I + EY + G F +
Sbjct: 43 YNADTNPKKVNLGVGAYRDESGKPWILPAVKEAEAIISSDLSKYNKEYPPVAGFPLFLEA 102
Query: 215 AAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHV-- 272
A L +G+D A ++ R+A Q +SG+GSL +G FL + P Y P+ TW H
Sbjct: 103 AQFLMFGKDSKAAQEGRIASCQSLSGTGSLHIGFEFLHLWMPK-AEFYMPSTTWPNHYGI 161
Query: 273 --RFCTDSRLNVGAYRYFDNKTN-GLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSE 329
+ ++ Y Y +DF+ +DI++ PE+SI +HNP+G+D +E
Sbjct: 162 YDKVFNKLKVPYKEYTYLRKDGELEIDFSNTKKDIQSAPEKSIFLFHACAHNPSGIDFTE 221
Query: 330 DQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGL 389
QW++L ++K++ FFD AY G +G F+ DAF++R F ++ +AQSFSKN GL
Sbjct: 222 AQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRMFVDAGVEVLVAQSFSKNFGL 281
Query: 390 YGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDET 449
YGER+G V+ + + ++ +
Sbjct: 282 YGERIGCLHVVHAGVEGS----------------------------------VEKNKALS 307
Query: 450 ERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSK 509
++S + + IR +S IHGA IV I+ D +L +++ K MS RI +R L +
Sbjct: 308 AAMVSGMTLQIRKTWSMSAIHGAYIVQVIVHDKRLLQMFYDNVKEMSARIHRMRSLLHAS 367
Query: 510 ILDK-----GSKKNWDHITNQKGMFCYTGLSASQ 538
+ + GSK WDHI GMF +TGL+
Sbjct: 368 LAKRKTPGPGSKGTWDHILTAIGMFTFTGLTPEH 401
|
| >3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} Length = 448 | Back alignment and structure |
|---|
Score = 90.5 bits (225), Expect = 2e-19
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 1 LAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHV----RFCTDSRLNVGAYRY 56
+A Q +SG+GSL +G FL + P Y P+ TW H + ++ Y Y
Sbjct: 120 IASCQSLSGTGSLHIGFEFLHLWMPK-AEFYMPSTTWPNHYGIYDKVFNKLKVPYKEYTY 178
Query: 57 FDNKTN-GLDFAGMMEDIKLA 76
+DF+ +DI+ A
Sbjct: 179 LRKDGELEIDFSNTKKDIQSA 199
|
| >3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} Length = 448 | Back alignment and structure |
|---|
Score = 90.1 bits (224), Expect = 2e-19
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 74 KLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHV----RFCTDSRLNVGAYR 129
++A Q +SG+GSL +G FL + P Y P+ TW H + ++ Y
Sbjct: 119 RIASCQSLSGTGSLHIGFEFLHLWMPK-AEFYMPSTTWPNHYGIYDKVFNKLKVPYKEYT 177
Query: 130 YFDNKTN-GLDFAGMMEDIK 148
Y +DF+ +DI+
Sbjct: 178 YLRKDGELEIDFSNTKKDIQ 197
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} Length = 418 | Back alignment and structure |
|---|
Score = 445 bits (1148), Expect = e-153
Identities = 66/398 (16%), Positives = 129/398 (32%), Gaps = 64/398 (16%)
Query: 157 FNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAA 216
++ +N +GA E+G L +VKE + + YA I G F A
Sbjct: 32 AKENGRENVVNGTLGAIHDEEGNLVFLKTVKEEYLSL-SDSEHVGYAPIAGIPDFLCAAE 90
Query: 217 QLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCT 276
+ +G P + + + G+G + + + V W + C+
Sbjct: 91 KECFGNFRP---EGHIRSIATAGGTGGIHH---LIHNYTEPGDEVLTADWYWGAYRVICS 144
Query: 277 DSRLNVGAYRYFDNKT--NGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQ 334
D+ + Y FD N F + ++ A ++ T +NPTG + + W
Sbjct: 145 DTGRTLVTYSLFDEHNNFNHEAFQNRVNELAAKQTNVVVIFNTPGNNPTGYSIEDKDWDS 204
Query: 335 LAVVVK------QRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQL--CLAQSFSKN 386
+ +K + ++ D+AYL SG+ D+ F+ ++ C+ S SK
Sbjct: 205 ILNFLKDLVAIGRNNVIIGIDVAYLDY-SGEKDEVRAFFNKFSHLPKEILTCVCYSLSKG 263
Query: 387 MGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQC 446
+YG+RVG ++
Sbjct: 264 FTMYGQRVGAMIGISDDE------------------------------------------ 281
Query: 447 DETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREEL 506
+ + K R +SN R + I++DP ++ E I +
Sbjct: 282 EIADEFFEVNKSTSRATWSNICRPAMRTMANIVADPAKFKEYEAERNCYYQLIRDRADIF 341
Query: 507 KSKILDKGSKKNWDHITNQKGMFCYTGLSASQGMSNRI 544
K + ++ + + G F ++ + +
Sbjct: 342 K----QEAAQVGLPMLPYRGGFFITIPTDSANAICEEL 375
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} Length = 418 | Back alignment and structure |
|---|
Score = 86.2 bits (214), Expect = 3e-18
Identities = 13/94 (13%), Positives = 27/94 (28%), Gaps = 5/94 (5%)
Query: 57 FDNKTNGLDFAGMMEDIKLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVR 116
F F + + + G+G + + + V W +
Sbjct: 85 FLCAAEKECFGNFRPEGHIRSIATAGGTGGIHH---LIHNYTEPGDEVLTADWYWGAYRV 141
Query: 117 FCTDSRLNVGAYRYFDNKT--NGLDFAGMMEDIK 148
C+D+ + Y FD N F + ++
Sbjct: 142 ICSDTGRTLVTYSLFDEHNNFNHEAFQNRVNELA 175
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} Length = 418 | Back alignment and structure |
|---|
Score = 85.8 bits (213), Expect = 4e-18
Identities = 11/78 (14%), Positives = 24/78 (30%), Gaps = 5/78 (6%)
Query: 1 LAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNK 60
+ + G+G + + + V W + C+D+ + Y FD
Sbjct: 103 IRSIATAGGTGGIHH---LIHNYTEPGDEVLTADWYWGAYRVICSDTGRTLVTYSLFDEH 159
Query: 61 T--NGLDFAGMMEDIKLA 76
N F + ++
Sbjct: 160 NNFNHEAFQNRVNELAAK 177
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} Length = 430 | Back alignment and structure |
|---|
Score = 331 bits (851), Expect = e-108
Identities = 54/390 (13%), Positives = 109/390 (27%), Gaps = 59/390 (15%)
Query: 157 FNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAA 216
+ + N +G +DGK + S+ + + YA G + L
Sbjct: 41 QSAEAKSTTYNATIGMATNKDGKMF-ASSLDAMFNDL-TPDEIFPYAPPQGIEELRDLWQ 98
Query: 217 QLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCT 276
Q ++ DN + + + L + T+ P W +
Sbjct: 99 QKMLRDNPELSIDNMSRPIVTNALTHGLSLVGDLFVN--QD-DTILLPEHNWGNYKLVFN 155
Query: 277 DSR-LNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQL 335
N+ Y FD ++E +++ + ++ + +NPTG + + +
Sbjct: 156 TRNGANLQTYPIFDK-DGHYTTDSLVEALQSYNKDKVIMILNYPNNPTGYTPTHKEVTTI 214
Query: 336 AVVVKQ-----RHLYPFFDMAYLGLTSGDFDKDAF--SLRYFAKEVGQLCLAQSFSKNMG 388
+K + D AY GL D + +L +K
Sbjct: 215 VEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLDGATKEFF 274
Query: 389 LYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDE 448
+G RVG + T E + +++K LIR S+ P+ V +L +
Sbjct: 275 AWGFRVGFMTFGTSDQTTKEVLEAKVKGLIRSNISSGPLPTQSAVKHVLKNN-------- 326
Query: 449 TERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKS 508
+ + + + + R +E +
Sbjct: 327 ---------------------------------KQFDKEIEQNIQTLKERYEVTKEVVY- 352
Query: 509 KILDKGSKKNWDHITNQKGMFCYTGLSASQ 538
+W G F +
Sbjct: 353 ---ADQYHSHWQAYDFNSGYFMAIKVHDVD 379
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} Length = 430 | Back alignment and structure |
|---|
Score = 64.7 bits (158), Expect = 3e-11
Identities = 9/79 (11%), Positives = 21/79 (26%), Gaps = 5/79 (6%)
Query: 76 AIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSR-LNVGAYRYFDNK 134
+ + + L + T+ P W + N+ Y FD
Sbjct: 115 RPIVTNALTHGLSLVGDLFVN--QD-DTILLPEHNWGNYKLVFNTRNGANLQTYPIFDK- 170
Query: 135 TNGLDFAGMMEDIKPLKQQ 153
++E ++ +
Sbjct: 171 DGHYTTDSLVEALQSYNKD 189
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} Length = 430 | Back alignment and structure |
|---|
Score = 62.0 bits (151), Expect = 2e-10
Identities = 9/74 (12%), Positives = 20/74 (27%), Gaps = 5/74 (6%)
Query: 2 AIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSR-LNVGAYRYFDNK 60
+ + + L + T+ P W + N+ Y FD
Sbjct: 115 RPIVTNALTHGLSLVGDLFVN--QD-DTILLPEHNWGNYKLVFNTRNGANLQTYPIFDK- 170
Query: 61 TNGLDFAGMMEDIK 74
++E ++
Sbjct: 171 DGHYTTDSLVEALQ 184
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} Length = 361 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 1e-06
Identities = 15/103 (14%), Positives = 44/103 (42%), Gaps = 10/103 (9%)
Query: 294 GLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYL 353
+D+ + I + + + + + +NP G ++++++ + + +++ D A++
Sbjct: 132 CIDYEDI---ISKIDDVDSVII-GNPNNPNGGLINKEKFIHVLKLAEEKKKTIIIDEAFI 187
Query: 354 GLTSGDF-DKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVG 395
+F + S K L + ++ +K + G R G
Sbjct: 188 -----EFTGDPSSSFVGEIKNYSCLFIIRAMTKFFAMPGIRFG 225
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* Length = 356 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 7e-06
Identities = 48/224 (21%), Positives = 80/224 (35%), Gaps = 43/224 (19%)
Query: 249 AFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTN-GLDFAGMMEDIKAM 307
AF E PG + + PT+ G R N LD G+ +
Sbjct: 94 AFCE---PGKDAILYCPPTY-GMYSVSA--ETIGVECRTVPTLDNWQLDLQGI---SDKL 144
Query: 308 PERSILFLQTSSHNPTGVDLSEDQWRQLA--------VVVKQRHLYPFFDMAYLGLTSGD 359
++++ S +NPTG ++ +R L VV D AY +
Sbjct: 145 DGVKVVYV-CSPNNPTGQLINPQDFRTLLELTRGKAIVVA---------DEAY-----IE 189
Query: 360 FDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIR 419
F A SL + E L + ++ SK L G R G F++ +++ L +
Sbjct: 190 FCPQA-SLAGWLAEYPHLAILRTLSKAFALAGLRCG-FTLANE------EVINLLM-KVI 240
Query: 420 GFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGF 463
Y A I + LS + A + +I+++ + LI
Sbjct: 241 APY-PLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAAL 283
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* Length = 432 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 1e-05
Identities = 35/144 (24%), Positives = 48/144 (33%), Gaps = 18/144 (12%)
Query: 255 YPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFD-NKTNGLDFAGMMEDIKAMPERSIL 313
YP Y + G G Y NG D+ + I+
Sbjct: 152 YP----AYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTPENG-----FFPDLSTVGRTDII 202
Query: 314 FLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYF--A 371
F S +NPTG + +Q QL K+ +D AY D + S+ A
Sbjct: 203 FF-CSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYM---SDDNPRSIFEIPGA 258
Query: 372 KEVGQLCLAQSFSKNMGLYGERVG 395
+EV SFS G G R+G
Sbjct: 259 EEVA--METASFSNYAGFTGVRLG 280
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A Length = 369 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 1e-05
Identities = 26/108 (24%), Positives = 46/108 (42%), Gaps = 22/108 (20%)
Query: 294 GLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLA------VVVKQRHLYPF 347
+D +E+I+A + I+F+ T+ +NPTG S D ++ V+V
Sbjct: 150 RIDMDVALEEIRA-KQPDIVFV-TTPNNPTGDVTSLDDVERIINVAPGIVIV-------- 199
Query: 348 FDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVG 395
D AY +F + K +L ++++ SK G R+G
Sbjct: 200 -DEAY-----AEFSPSPSATTLLEKYPTKLVVSRTMSKAFDFAGGRLG 241
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* Length = 364 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 2e-05
Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 7/93 (7%)
Query: 304 IKAMPER-SILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDK 362
++A+ LFL + +NPTG+ + +A K ++ D A++ DF
Sbjct: 140 LEALTPDLDCLFL-CTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFI-----DFIP 193
Query: 363 DAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVG 395
K+ + + +S +K + G R+G
Sbjct: 194 HETGFIPALKDNPHIWVLRSLTKFYAIPGLRLG 226
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} Length = 444 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 3e-05
Identities = 33/171 (19%), Positives = 59/171 (34%), Gaps = 23/171 (13%)
Query: 294 GLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYL 353
+DF + R + NPTG L++++ LA + K+ + D AY
Sbjct: 190 RVDFEALENLPALKEGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAYG 249
Query: 354 GLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQ 413
+ L S SK +GL G R G ++ +++
Sbjct: 250 MPF---PNIIYSDAHLNWDN--NTILCFSLSK-IGLPGMRTGI--IVAD-----AKVIEA 296
Query: 414 LKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFY 464
+ + P GA I T ++++ ++K D I+ FY
Sbjct: 297 VSAMNAVVNLAPTRFGAAIATPLVANDRIKQLSDNE----------IKPFY 337
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.2 bits (106), Expect = 5e-05
Identities = 78/577 (13%), Positives = 153/577 (26%), Gaps = 212/577 (36%)
Query: 25 PGVKTVYFPT---PTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKLAIVQGI 81
P + T + +N + F ++ NV + + L + K ++ G+
Sbjct: 105 PSMMTRMYIEQRDRLYNDNQVF---AKYNVSRLQPYLKLRQALL---ELRPAKNVLIDGV 158
Query: 82 SGSG--SLRVGTA----FLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKT 135
GSG + + + + F W LN+ N
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKI----F----W-----------LNLKNC----NSP 195
Query: 136 NGLDFAGMMEDIKPLKQQLKGFNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYE 195
+ +E ++ L Q+ DP N + + + S++ RR+ +
Sbjct: 196 ETV-----LEMLQKLLYQI-----DP-----NWTSRSDHSSNI-KLRIHSIQAELRRLLK 239
Query: 196 KNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFY 255
Y N C L L N VQ + + F
Sbjct: 240 ---SKPYEN-------CLLV--L----------LN----VQ------NAKA----WNAFN 263
Query: 256 PGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYF--DNKTNGLD-------FAGMME-DIK 305
K + T T V TD L+ + D+ + L ++ +
Sbjct: 264 LSCKILL--T-TRFKQV---TDF-LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ 316
Query: 306 AMPERSILFLQTSSHNPT-----GVDLSE-----DQWRQLAVVVKQRHLYPFFDMAYLGL 355
+P + + NP + + D W+ V L + + L
Sbjct: 317 DLPR------EVLTTNPRRLSIIAESIRDGLATWDNWKH----VNCDKLTTIIESSLNVL 366
Query: 356 TSGDFDKDAF-SLRYFAKEV----GQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERI 410
++ + F L F L L ++ + + +
Sbjct: 367 EPAEY-RKMFDRLSVFPPSAHIPTILLSL---------IWFD---------VIKSDVMVV 407
Query: 411 MSQL--KILI-----RGFYSNPPIHGARIVTEILSDPKLKAQCDET----ERIMSQLKIL 459
+++L L+ S I I + LK + + I+ I
Sbjct: 408 VNKLHKYSLVEKQPKESTIS---IPS------IYLE--LKVKLENEYALHRSIVDHYNIP 456
Query: 460 IRGFYSNPPIHGARIVTEILSDPKLKAQWFE------ECKGMSNRISSIREE------LK 507
+ F S+ L P L ++ + R++ R L+
Sbjct: 457 -KTFDSDD-----------LIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE 504
Query: 508 SKILDKGSKKNW---------------DHITNQKGMF 529
KI + N +I + +
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKY 541
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.5 bits (104), Expect = 9e-05
Identities = 69/446 (15%), Positives = 135/446 (30%), Gaps = 137/446 (30%)
Query: 126 GAYRYFDNKTNGLDFAGMMEDIKPLKQQLKGFNKDPHPKKMNLGVGAYRGEDGKPYVLPS 185
G R F + K ++ ++ F ++ + + E +P
Sbjct: 63 GTLRLFW----------TLLS-KQ-EEMVQKFVEEVLRINYKFLMSPIKTEQRQP----- 105
Query: 186 VKEAERRIYEKNLDHEYANIGGDAKFCK---------LAAQLAYGEDFPAFKDNRLAIVQ 236
R+Y + D Y + F K L + A E + + ++
Sbjct: 106 --SMMTRMYIEQRDRLY---NDNQVFAKYNVSRLQPYLKLRQALLEL----RPAKNVLID 156
Query: 237 GISGSG--SLRVGTA----FLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDN 290
G+ GSG + + + + F W LN+ N
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMDFKI----F----W-----------LNLKNC----N 193
Query: 291 KTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDM 350
+ +E ++ + + + S + + + L + + + Y
Sbjct: 194 SPETV-----LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE---N 245
Query: 351 AYLGLTSGD--FDK---DAFSLRYFAKEVGQLC--LAQSFSKNM--GLYGERVGTFSV-- 399
L L + +AF+L C L + K + L S+
Sbjct: 246 CLLVL---LNVQNAKAWNAFNLS---------CKILLTTRFKQVTDFLSAATTTHISLDH 293
Query: 400 ----LTPTSDETERIMSQLKILIRGFYSNP-------PIHGARIVTEILSDPK------L 442
LTP DE + ++ K L P P + I+ E + D
Sbjct: 294 HSMTLTP--DEVKSLLL--KYLDCRPQDLPREVLTTNPRRLS-IIAESIRDGLATWDNWK 348
Query: 443 KAQCDETERIMSQ-LKIL----IRGFYSN----PPIHGARIVTEILSDPKLKAQWFEECK 493
CD+ I+ L +L R + PP A I T +LS + WF+
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP--SAHIPTILLS--LI---WFDV-- 399
Query: 494 GMSNRISSIREELKSK-ILDKGSKKN 518
+ + + + +L +++K K++
Sbjct: 400 -IKSDVMVVVNKLHKYSLVEKQPKES 424
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} Length = 360 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 3e-04
Identities = 21/107 (19%), Positives = 39/107 (36%), Gaps = 27/107 (25%)
Query: 296 DFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLA------VVVKQRHLYPFFD 349
DF + + FL T+ + P G + +LA +V+ D
Sbjct: 138 DFRIAGFPERYEG--KVFFL-TTPNAPLGPSFPLEYIDELARRCAGMLVL---------D 185
Query: 350 MAYLGLTSGDF-DKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVG 395
Y +F + +A L + + + ++ SK+ L G R+G
Sbjct: 186 ETY-----AEFAESNALEL---VRRHENVVVTRTLSKSYSLAGMRIG 224
|
| >3b40_A PVDM, probable dipeptidase; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa} Length = 417 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 6e-04
Identities = 13/89 (14%), Positives = 36/89 (40%), Gaps = 6/89 (6%)
Query: 226 AFKDNRLAIVQGISGSGSLRVGTAFLERFYP-GVKTVYFPTPTWNGHVRFCTDSRLNVGA 284
+ + AIV + + L + L+++ GV+ ++ G+ + DS +
Sbjct: 125 LAMEGKFAIVMSMLNAYPLGDDLSQLDKWAARGVRMF---GFSYVGNNDWA-DSSRPLPF 180
Query: 285 YRYFDNKTNGLDFAGMMEDIKAMPERSIL 313
+ + GL G + ++ + + ++
Sbjct: 181 FNDSPDALGGLSPLG-KQAVERLNDLGVI 208
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} Length = 376 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 7e-04
Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 11/80 (13%)
Query: 320 HNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYF--AKEVGQL 377
+NPTG + + + ++ L+ D Y+ ++ +A S AKE
Sbjct: 168 NNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQV---YEGEAPSPLALPGAKERV-- 222
Query: 378 CLAQSFSK--NMGLYGERVG 395
S SK N+ G R+G
Sbjct: 223 VELFSLSKSYNLA--GFRLG 240
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} Length = 449 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 7e-04
Identities = 25/101 (24%), Positives = 37/101 (36%), Gaps = 11/101 (10%)
Query: 299 GMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSG 358
D+ I+F S +NPTG + Q +L ++ +D AY
Sbjct: 199 HFFPDLSKAKRTDIIFF-CSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYI-- 255
Query: 359 DFDKDA----FSLRYFAKEVGQLCLAQSFSKNMGLYGERVG 395
+ D + + A EV SFSK G G R+G
Sbjct: 256 -SNPDCPKTIYEIPG-ADEVA--IETCSFSKYAGFTGVRLG 292
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} Length = 350 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 8e-04
Identities = 19/95 (20%), Positives = 32/95 (33%), Gaps = 9/95 (9%)
Query: 302 EDIKAMPER-SILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDF 360
+ +A +L + +NP G L + +L D +Y+ F
Sbjct: 121 DIGEADFSNMDFCWL-CNPNNPDGRLLQRTEILRLLNDHPDTTF--VLDQSYV-----SF 172
Query: 361 DKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVG 395
+ K L + SFS G+ G R+G
Sbjct: 173 TTEEVIRPADIKGRKNLVMVYSFSHAYGIPGLRIG 207
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 583 | |||
| 3k7y_A | 405 | Aspartate aminotransferase; aminotrans pyridoxal p | 100.0 | |
| 4h51_A | 420 | Aspartate aminotransferase; ssgcid, structural gen | 100.0 | |
| 7aat_A | 401 | Aspartate aminotransferase; transferase(aminotrans | 100.0 | |
| 4f4e_A | 420 | Aromatic-amino-acid aminotransferase; ssgcid, stru | 100.0 | |
| 3meb_A | 448 | Aspartate aminotransferase; pyridoxal PHOS transfe | 100.0 | |
| 4eu1_A | 409 | Mitochondrial aspartate aminotransferase; ssgcid, | 100.0 | |
| 3fsl_A | 397 | Aromatic-amino-acid aminotransferase; tyrosine ami | 100.0 | |
| 1yaa_A | 412 | Aspartate aminotransferase; HET: PLP; 2.05A {Sacch | 100.0 | |
| 2q7w_A | 396 | Aspartate aminotransferase; mechanism-based inhibi | 100.0 | |
| 1ajs_A | 412 | Aspartate aminotransferase; PIG, in the presence o | 100.0 | |
| 2ay1_A | 394 | Aroat, aromatic amino acid aminotransferase; HET: | 100.0 | |
| 1b5p_A | 385 | Protein (aspartate aminotransferase); pyridoxal en | 100.0 | |
| 3aow_A | 448 | Putative uncharacterized protein PH0207; protein-P | 100.0 | |
| 3b46_A | 447 | Aminotransferase BNA3; kynurenine aminotransferase | 100.0 | |
| 3dyd_A | 427 | Tyrosine aminotransferase; PLP, SGC, structural ge | 100.0 | |
| 3tcm_A | 500 | Alanine aminotransferase 2; pyridoxal phosphate (P | 100.0 | |
| 3t18_A | 413 | Aminotransferase class I and II; PSI-biology, MCSG | 100.0 | |
| 2r2n_A | 425 | Kynurenine/alpha-aminoadipate aminotransferase mit | 100.0 | |
| 3rq1_A | 418 | Aminotransferase class I and II; structural genomi | 100.0 | |
| 3ihj_A | 498 | Alanine aminotransferase 2; helix, structural geno | 100.0 | |
| 1gd9_A | 389 | Aspartate aminotransferase; pyridoxal enzyme, temp | 100.0 | |
| 3jtx_A | 396 | Aminotransferase; NP_283882.1, structural genomics | 100.0 | |
| 3e2y_A | 410 | Kynurenine-oxoglutarate transaminase 3; alpha beta | 100.0 | |
| 2x5f_A | 430 | Aspartate_tyrosine_phenylalanine pyridoxal-5' phos | 100.0 | |
| 2o1b_A | 404 | Aminotransferase, class I; aminotrasferase; HET: P | 100.0 | |
| 3ezs_A | 376 | Aminotransferase ASPB; NP_207418.1, structural gen | 100.0 | |
| 3fvs_A | 422 | Kynurenine--oxoglutarate transaminase 1; alpha bet | 100.0 | |
| 1vp4_A | 425 | Aminotransferase, putative; structural genomics, j | 100.0 | |
| 1u08_A | 386 | Hypothetical aminotransferase YBDL; alpha beta pro | 100.0 | |
| 2dou_A | 376 | Probable N-succinyldiaminopimelate aminotransfera; | 100.0 | |
| 3h14_A | 391 | Aminotransferase, classes I and II; YP_167802.1, S | 100.0 | |
| 3ele_A | 398 | Amino transferase; RER070207001803, structural gen | 100.0 | |
| 3ppl_A | 427 | Aspartate aminotransferase; dimer, PLP-dependent t | 100.0 | |
| 3g0t_A | 437 | Putative aminotransferase; NP_905498.1, putative a | 100.0 | |
| 2x5d_A | 412 | Probable aminotransferase; HET: LLP PLP; 2.25A {Ps | 100.0 | |
| 3d6k_A | 422 | Putative aminotransferase; APC82464, corynebacteri | 100.0 | |
| 3nra_A | 407 | Aspartate aminotransferase; structural genomics, j | 100.0 | |
| 1j32_A | 388 | Aspartate aminotransferase; HET: PLP; 2.10A {Phorm | 100.0 | |
| 1iay_A | 428 | ACC synthase 2, 1-aminocyclopropane-1-carboxylate | 100.0 | |
| 1o4s_A | 389 | Aspartate aminotransferase; TM1255, structural gen | 100.0 | |
| 3qgu_A | 449 | LL-diaminopimelate aminotransferase; L-lysine, pyr | 100.0 | |
| 1yiz_A | 429 | Kynurenine aminotransferase; glutamine transaminas | 100.0 | |
| 2zc0_A | 407 | Alanine glyoxylate transaminase; alanine:glyoxylat | 100.0 | |
| 1xi9_A | 406 | Putative transaminase; alanine aminotransferase, s | 100.0 | |
| 3piu_A | 435 | 1-aminocyclopropane-1-carboxylate synthase; fruit | 100.0 | |
| 2o0r_A | 411 | RV0858C (N-succinyldiaminopimelate aminotransfera; | 100.0 | |
| 2z61_A | 370 | Probable aspartate aminotransferase 2; amino acid | 100.0 | |
| 3fdb_A | 377 | Beta C-S lyase, putative PLP-dependent beta-cystat | 100.0 | |
| 1bw0_A | 416 | TAT, protein (tyrosine aminotransferase); tyrosine | 100.0 | |
| 3g7q_A | 417 | Valine-pyruvate aminotransferase; NP_462565.1, str | 100.0 | |
| 2zyj_A | 397 | Alpha-aminodipate aminotransferase; alpha-aminoadi | 100.0 | |
| 3ez1_A | 423 | Aminotransferase MOCR family; YP_604413.1, struct | 100.0 | |
| 3kax_A | 383 | Aminotransferase, classes I and II; PLP, C-S lyase | 100.0 | |
| 1c7n_A | 399 | Cystalysin; transferase, aminotransferase, pyridox | 100.0 | |
| 4dq6_A | 391 | Putative pyridoxal phosphate-dependent transferas; | 100.0 | |
| 3ei9_A | 432 | LL-diaminopimelate aminotransferase; lysine biosyn | 100.0 | |
| 3dzz_A | 391 | Putative pyridoxal 5'-phosphate-dependent C-S LYA; | 100.0 | |
| 3ly1_A | 354 | Putative histidinol-phosphate aminotransferase; st | 100.0 | |
| 1v2d_A | 381 | Glutamine aminotransferase; PLP, riken structural | 100.0 | |
| 3if2_A | 444 | Aminotransferase; YP_265399.1, structura genomics, | 100.0 | |
| 1d2f_A | 390 | MALY protein; aminotransferase fold, large PLP-bin | 100.0 | |
| 3f6t_A | 533 | Aspartate aminotransferase; YP_194538.1, STRU geno | 100.0 | |
| 3get_A | 365 | Histidinol-phosphate aminotransferase; NP_281508.1 | 100.0 | |
| 2gb3_A | 409 | Aspartate aminotransferase; TM1698, structural gen | 100.0 | |
| 1fg7_A | 356 | Histidinol phosphate aminotransferase; HISC, histi | 100.0 | |
| 3asa_A | 400 | LL-diaminopimelate aminotransferase; PLP dependent | 100.0 | |
| 3l8a_A | 421 | METC, putative aminotransferase, probable beta-cys | 100.0 | |
| 3euc_A | 367 | Histidinol-phosphate aminotransferase 2; YP_297314 | 100.0 | |
| 3ffh_A | 363 | Histidinol-phosphate aminotransferase; APC88260, l | 100.0 | |
| 2zy4_A | 546 | L-aspartate beta-decarboxylase; pyridoxal 5'-phosp | 100.0 | |
| 3bwn_A | 391 | AT1G70560, L-tryptophan aminotransferase; auxin sy | 100.0 | |
| 3op7_A | 375 | Aminotransferase class I and II; PLP-dependent tra | 100.0 | |
| 3b1d_A | 392 | Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ | 100.0 | |
| 3fkd_A | 350 | L-threonine-O-3-phosphate decarboxylase; structura | 99.97 | |
| 3ftb_A | 361 | Histidinol-phosphate aminotransferase; structural | 99.97 | |
| 1lc5_A | 364 | COBD, L-threonine-O-3-phosphate decarboxylase; PLP | 99.97 | |
| 3cq5_A | 369 | Histidinol-phosphate aminotransferase; PLP, PMP, a | 99.97 | |
| 1uu1_A | 335 | Histidinol-phosphate aminotransferase; histidine b | 99.97 | |
| 3p1t_A | 337 | Putative histidinol-phosphate aminotransferase; PL | 99.97 | |
| 3hdo_A | 360 | Histidinol-phosphate aminotransferase; PSI-II, his | 99.97 | |
| 2hox_A | 427 | ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA | 99.97 | |
| 3a2b_A | 398 | Serine palmitoyltransferase; vitamin B6-dependent | 99.95 | |
| 1e5e_A | 404 | MGL, methionine gamma-lyase; methionine biosynthes | 99.94 | |
| 3tqx_A | 399 | 2-amino-3-ketobutyrate coenzyme A ligase; energy m | 99.93 | |
| 1bs0_A | 384 | Protein (8-amino-7-oxonanoate synthase); PLP-depen | 99.92 | |
| 1sff_A | 426 | 4-aminobutyrate aminotransferase; enzyme complexes | 99.92 | |
| 1t3i_A | 420 | Probable cysteine desulfurase; PLP-binding enzyme, | 99.92 | |
| 2dr1_A | 386 | PH1308 protein, 386AA long hypothetical serine ami | 99.91 | |
| 2eh6_A | 375 | Acoat, acetylornithine aminotransferase; ARGD, str | 99.91 | |
| 1vjo_A | 393 | Alanine--glyoxylate aminotransferase; 17130350, AL | 99.91 | |
| 2ord_A | 397 | Acoat, acetylornithine aminotransferase; TM1785, a | 99.91 | |
| 1kmj_A | 406 | Selenocysteine lyase; persulfide perselenide NIFS | 99.91 | |
| 2e7j_A | 371 | SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st | 99.91 | |
| 1fc4_A | 401 | 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino | 99.91 | |
| 1jg8_A | 347 | L-ALLO-threonine aldolase; glycine biosynthesis, p | 99.91 | |
| 4adb_A | 406 | Succinylornithine transaminase; transferase, PLP e | 99.9 | |
| 2rfv_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate, PL | 99.9 | |
| 1eg5_A | 384 | Aminotransferase; PLP-dependent enzymes, iron-sulf | 99.9 | |
| 1elu_A | 390 | L-cysteine/L-cystine C-S lyase; FES cluster biosyn | 99.89 | |
| 1svv_A | 359 | Threonine aldolase; structural genomics, structura | 99.89 | |
| 3ruy_A | 392 | Ornithine aminotransferase; structural genomics, c | 99.89 | |
| 2ez2_A | 456 | Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend | 99.89 | |
| 2bwn_A | 401 | 5-aminolevulinate synthase; tetrapyrrole biosynthe | 99.89 | |
| 3i4j_A | 430 | Aminotransferase, class III; structural GENOMICS,N | 99.89 | |
| 2w8t_A | 427 | SPT, serine palmitoyltransferase; HET: LLP; 1.25A | 99.88 | |
| 1b9h_A | 388 | AHBA synthase, protein (3-amino-5-hydroxybenzoic a | 99.88 | |
| 2aeu_A | 374 | Hypothetical protein MJ0158; selenocysteine syntha | 99.88 | |
| 2eo5_A | 419 | 419AA long hypothetical aminotransferase; PLP enzy | 99.88 | |
| 2z9v_A | 392 | Aspartate aminotransferase; pyridoxamine, pyruvate | 99.88 | |
| 3dxv_A | 439 | Alpha-amino-epsilon-caprolactam racemase; fold-TYP | 99.88 | |
| 3f9t_A | 397 | TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L | 99.88 | |
| 1iug_A | 352 | Putative aspartate aminotransferase; wild type, py | 99.88 | |
| 1vef_A | 395 | Acetylornithine/acetyl-lysine aminotransferase; PL | 99.88 | |
| 3kki_A | 409 | CAI-1 autoinducer synthase; quorum sensing, CQSA, | 99.87 | |
| 2pb2_A | 420 | Acetylornithine/succinyldiaminopimelate aminotran; | 99.87 | |
| 3lvm_A | 423 | Cysteine desulfurase; structural genomics, montrea | 99.87 | |
| 2ch1_A | 396 | 3-hydroxykynurenine transaminase; PLP-enzyme, kynu | 99.87 | |
| 1ibj_A | 464 | CBL, cystathionine beta-lyase; PLP-dependent enzym | 99.87 | |
| 2huf_A | 393 | Alanine glyoxylate aminotransferase; alpha and bet | 99.87 | |
| 3zrp_A | 384 | Serine-pyruvate aminotransferase (AGXT); HET: PLP; | 99.87 | |
| 1m32_A | 366 | 2-aminoethylphosphonate-pyruvate aminotransferase; | 99.87 | |
| 3cai_A | 406 | Possible aminotransferase; RV3778C; 1.80A {Mycobac | 99.87 | |
| 1s0a_A | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.87 | |
| 3nx3_A | 395 | Acoat, acetylornithine aminotransferase; csgid, st | 99.87 | |
| 4ffc_A | 453 | 4-aminobutyrate aminotransferase (GABT); structura | 99.86 | |
| 2yrr_A | 353 | Aminotransferase, class V; structural genomics, NP | 99.86 | |
| 4eb5_A | 382 | Probable cysteine desulfurase 2; scaffold, transfe | 99.86 | |
| 2oga_A | 399 | Transaminase; PLP-dependent enzyme, desosamine, de | 99.86 | |
| 4a6r_A | 459 | Omega transaminase; transferase, PLP-binding enzym | 99.86 | |
| 1zod_A | 433 | DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, | 99.86 | |
| 2cy8_A | 453 | D-phgat, D-phenylglycine aminotransferase; structu | 99.85 | |
| 3a9z_A | 432 | Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph | 99.85 | |
| 3gju_A | 460 | Putative aminotransferase; pyridoxal phosphate, PL | 99.85 | |
| 2bkw_A | 385 | Alanine-glyoxylate aminotransferase 1; analine-gly | 99.85 | |
| 2po3_A | 424 | 4-dehydrase; external aldimine, PLP, aminotransfer | 99.85 | |
| 1v72_A | 356 | Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2 | 99.85 | |
| 3cog_A | 403 | Cystathionine gamma-lyase; CTH, PLP, propargylglyc | 99.85 | |
| 3isl_A | 416 | Purine catabolism protein PUCG; pyridoxalphosphate | 99.85 | |
| 3l44_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha | 99.85 | |
| 1ax4_A | 467 | Tryptophanase; tryptophan biosynthesis, tryptophan | 99.84 | |
| 1cs1_A | 386 | CGS, protein (cystathionine gamma-synthase); lyase | 99.84 | |
| 3acz_A | 389 | Methionine gamma-lyase; L-methionine; HET: LLP; 1. | 99.84 | |
| 3nnk_A | 411 | Ureidoglycine-glyoxylate aminotransferase; PLP-dep | 99.84 | |
| 3lws_A | 357 | Aromatic amino acid beta-eliminating lyase/threoni | 99.84 | |
| 1mdo_A | 393 | ARNB aminotransferase; type 1 aminotransferase fol | 99.84 | |
| 2dkj_A | 407 | Serine hydroxymethyltransferase; PLP dependent enz | 99.84 | |
| 3fq8_A | 427 | Glutamate-1-semialdehyde 2,1-aminomutase; drug res | 99.84 | |
| 3qhx_A | 392 | Cystathionine gamma-synthase METB (CGS); structura | 99.84 | |
| 3kgw_A | 393 | Alanine-glyoxylate aminotransferase; AAH25799.1, p | 99.84 | |
| 3ndn_A | 414 | O-succinylhomoserine sulfhydrylase; seattle struct | 99.84 | |
| 3f0h_A | 376 | Aminotransferase; RER070207000802, structural geno | 99.84 | |
| 3a8u_X | 449 | Omega-amino acid--pyruvate aminotransferase; large | 99.83 | |
| 3oks_A | 451 | 4-aminobutyrate transaminase; ssgcid, transferase, | 99.83 | |
| 1gc0_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate; HE | 99.83 | |
| 4hvk_A | 382 | Probable cysteine desulfurase 2; transferase and I | 99.83 | |
| 3mad_A | 514 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.83 | |
| 3n5m_A | 452 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.83 | |
| 1pff_A | 331 | Methionine gamma-lyase; homocysteine; 2.50A {Trich | 99.83 | |
| 1n8p_A | 393 | Cystathionine gamma-lyase; three open alpha/beta s | 99.83 | |
| 3k28_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn | 99.83 | |
| 3dod_A | 448 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.83 | |
| 3mc6_A | 497 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.83 | |
| 3i5t_A | 476 | Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N | 99.83 | |
| 3dr4_A | 391 | Putative perosamine synthetase; deoxysugar, pyrido | 99.82 | |
| 3tfu_A | 457 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.82 | |
| 1o69_A | 394 | Aminotransferase; structural genomics, unknown fun | 99.82 | |
| 2c81_A | 418 | Glutamine-2-deoxy-scyllo-inosose aminotransferase; | 99.82 | |
| 2epj_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.82 | |
| 2e7u_A | 424 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.82 | |
| 3vax_A | 400 | Putative uncharacterized protein DNDA; desulfurase | 99.82 | |
| 1z7d_A | 433 | Ornithine aminotransferase; structural genomics co | 99.82 | |
| 2oat_A | 439 | Ornithine aminotransferase; 5-fluoromethylornithin | 99.81 | |
| 3uwc_A | 374 | Nucleotide-sugar aminotransferase; lipopolysacchar | 99.81 | |
| 3pj0_A | 359 | LMO0305 protein; structural genomics, joint center | 99.81 | |
| 4e77_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase; structur | 99.81 | |
| 3ffr_A | 362 | Phosphoserine aminotransferase SERC; structural ge | 99.8 | |
| 3hmu_A | 472 | Aminotransferase, class III; structural genomics, | 99.8 | |
| 3nyt_A | 367 | Aminotransferase WBPE; PLP binding, nucleotide-sug | 99.8 | |
| 3ht4_A | 431 | Aluminum resistance protein; lyase, putative cysta | 99.79 | |
| 2cb1_A | 412 | O-acetyl homoserine sulfhydrylase; PLP enzyme, lya | 99.79 | |
| 1w23_A | 360 | Phosphoserine aminotransferase; pyridoxal-5'-phosp | 99.79 | |
| 2fnu_A | 375 | Aminotransferase; protein-product complex, structu | 99.79 | |
| 1qgn_A | 445 | Protein (cystathionine gamma-synthase); methionine | 99.79 | |
| 3n0l_A | 417 | Serine hydroxymethyltransferase; alpha beta class, | 99.79 | |
| 3jzl_A | 409 | Putative cystathionine beta-lyase involved in ALU | 99.79 | |
| 2cjg_A | 449 | L-lysine-epsilon aminotransferase; internal aldimi | 99.79 | |
| 1qz9_A | 416 | Kynureninase; kynurenine, tryptophan, PLP, vitamin | 99.78 | |
| 2fq6_A | 415 | Cystathionine beta-lyase; protein-inhibitor comple | 99.77 | |
| 1wyu_B | 474 | Glycine dehydrogenase subunit 2 (P-protein); alpha | 99.77 | |
| 3frk_A | 373 | QDTB; aminotransferase, sugar-modification, natura | 99.77 | |
| 3i16_A | 427 | Aluminum resistance protein; YP_878183.1, carbon-s | 99.77 | |
| 3hvy_A | 427 | Cystathionine beta-lyase family protein, YNBB B.S | 99.77 | |
| 3ri6_A | 430 | O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate | 99.76 | |
| 3ecd_A | 425 | Serine hydroxymethyltransferase 2; ssgcid, decode, | 99.75 | |
| 2c0r_A | 362 | PSAT, phosphoserine aminotransferase; pyridoxal-5' | 99.75 | |
| 3nmy_A | 400 | Xometc, cystathionine gamma-lyase-like protein; Cy | 99.75 | |
| 2oqx_A | 467 | Tryptophanase; lyase, pyridoxal phosphate, tryptop | 99.74 | |
| 3h7f_A | 447 | Serine hydroxymethyltransferase 1; cytoplasm, one- | 99.73 | |
| 1rv3_A | 483 | Serine hydroxymethyltransferase, cytosolic; one-ca | 99.73 | |
| 3bb8_A | 437 | CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat | 99.73 | |
| 3e9k_A | 465 | Kynureninase; kynurenine-L-hydrolase, kynurenine h | 99.72 | |
| 3gbx_A | 420 | Serine hydroxymethyltransferase; structural genomi | 99.72 | |
| 2vi8_A | 405 | Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, | 99.71 | |
| 3ju7_A | 377 | Putative PLP-dependent aminotransferase; NP_978343 | 99.71 | |
| 2dgk_A | 452 | GAD-beta, GADB, glutamate decarboxylase beta; gadb | 99.71 | |
| 3b8x_A | 390 | WBDK, pyridoxamine 5-phosphate-dependent dehydrase | 99.69 | |
| 2fyf_A | 398 | PSAT, phosphoserine aminotransferase; PLP-dependen | 99.69 | |
| 2ctz_A | 421 | O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac | 99.68 | |
| 2z67_A | 456 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.66 | |
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 99.65 | |
| 3vp6_A | 511 | Glutamate decarboxylase 1; catalytic loop SWAP, ly | 99.64 | |
| 2yky_A | 465 | Beta-transaminase; transferase; HET: PLP SFE; 1.69 | 99.43 | |
| 2x3l_A | 446 | ORN/Lys/Arg decarboxylase family protein; lyase; H | 99.61 | |
| 3hbx_A | 502 | GAD 1, glutamate decarboxylase 1; calmodulin-bindi | 99.61 | |
| 2okj_A | 504 | Glutamate decarboxylase 1; PLP-dependent decarboxy | 99.6 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 99.6 | |
| 4h51_A | 420 | Aspartate aminotransferase; ssgcid, structural gen | 99.59 | |
| 3ke3_A | 379 | Putative serine-pyruvate aminotransferase; structu | 99.55 | |
| 2jis_A | 515 | Cysteine sulfinic acid decarboxylase; pyridoxal ph | 99.54 | |
| 2vyc_A | 755 | Biodegradative arginine decarboxylase; pyridoxal p | 99.52 | |
| 2a7v_A | 490 | Serine hydroxymethyltransferase; structural genomi | 99.52 | |
| 1wyu_A | 438 | Glycine dehydrogenase (decarboxylating) subunit 1; | 99.5 | |
| 1ohv_A | 472 | 4-aminobutyrate aminotransferase; PLP-dependent en | 99.48 | |
| 1c4k_A | 730 | Protein (ornithine decarboxylase); lyase; HET: PLP | 99.47 | |
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 99.46 | |
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 99.41 | |
| 3n75_A | 715 | LDC, lysine decarboxylase, inducible; pyridoxal-5' | 99.37 | |
| 4ao9_A | 454 | Beta-phenylalanine aminotransferase; HET: PLP; 1.5 | 98.94 | |
| 3hl2_A | 501 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 98.87 | |
| 3bc8_A | 450 | O-phosphoseryl-tRNA(SEC) selenium transferase; dis | 98.67 | |
| 4a0g_A | 831 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 98.32 | |
| 3e77_A | 377 | Phosphoserine aminotransferase; SERC, PLP, structu | 98.3 | |
| 4atq_A | 456 | 4-aminobutyrate transaminase; transferase; HET: PL | 98.29 | |
| 3m5u_A | 361 | Phosphoserine aminotransferase; alpha-beta half sa | 98.25 | |
| 3qm2_A | 386 | Phosphoserine aminotransferase; structural genomic | 98.2 | |
| 4e3q_A | 473 | Pyruvate transaminase; aminotransferase, transfera | 98.19 | |
| 3meb_A | 448 | Aspartate aminotransferase; pyridoxal PHOS transfe | 97.94 | |
| 3k7y_A | 405 | Aspartate aminotransferase; aminotrans pyridoxal p | 97.67 | |
| 3ou5_A | 490 | Serine hydroxymethyltransferase, mitochondrial; st | 97.58 | |
| 7aat_A | 401 | Aspartate aminotransferase; transferase(aminotrans | 96.8 | |
| 4f4e_A | 420 | Aromatic-amino-acid aminotransferase; ssgcid, stru | 96.56 | |
| 4eu1_A | 409 | Mitochondrial aspartate aminotransferase; ssgcid, | 96.43 | |
| 3dyd_A | 427 | Tyrosine aminotransferase; PLP, SGC, structural ge | 96.35 | |
| 1yaa_A | 412 | Aspartate aminotransferase; HET: PLP; 2.05A {Sacch | 95.47 | |
| 3tcm_A | 500 | Alanine aminotransferase 2; pyridoxal phosphate (P | 93.91 | |
| 2ay1_A | 394 | Aroat, aromatic amino acid aminotransferase; HET: | 93.42 | |
| 3rq1_A | 418 | Aminotransferase class I and II; structural genomi | 93.05 | |
| 3fsl_A | 397 | Aromatic-amino-acid aminotransferase; tyrosine ami | 92.9 | |
| 1ajs_A | 412 | Aspartate aminotransferase; PIG, in the presence o | 92.09 | |
| 2q7w_A | 396 | Aspartate aminotransferase; mechanism-based inhibi | 92.09 | |
| 3t18_A | 413 | Aminotransferase class I and II; PSI-biology, MCSG | 91.01 | |
| 3nra_A | 407 | Aspartate aminotransferase; structural genomics, j | 85.13 | |
| 3gh5_A | 525 | HEX1, beta-hexosaminidase; beta-N-acetylhexosamini | 80.9 | |
| 2x5f_A | 430 | Aspartate_tyrosine_phenylalanine pyridoxal-5' phos | 80.87 | |
| 1jak_A | 512 | Beta-N-acetylhexosaminidase; glycoside hydrolase, | 80.39 |
| >3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-51 Score=437.64 Aligned_cols=370 Identities=25% Similarity=0.488 Sum_probs=292.7
Q ss_pred cchhhHhhccccccCCCCCccccCCccccCCCCCCCCChHHHHHHHHHh-ccCCCCCCCCCCCCHHHHHHHHHHHhCCCC
Q psy14428 146 DIKPLKQQLKGFNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIY-EKNLDHEYANIGGDAKFCKLAAQLAYGEDF 224 (583)
Q Consensus 146 ~~~~i~~l~~~~~~~~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~-~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g 224 (583)
++++++.+...+++...+++|||++|.+.++.+.+++++.++++.. +. .....++|++..|.++||++|++|+.+.++
T Consensus 12 ~~~~i~~~~~~~~~~~~~~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~ 90 (405)
T 3k7y_A 12 EVDNILKTAREFKEDTCEEKINLSIGVCCNDDGDLHIFDSVLNADK-LVTENYKEKPYLLGNGTEDFSTLTQNLIFGNNS 90 (405)
T ss_dssp CCCHHHHHHHHHTTSSCSSCEECSCSSCBCTTSSBCCCHHHHHHHH-HHHHHCCCCCCCTTSSCHHHHHHHHHHHHCSSC
T ss_pred CCChHHHHHHHHhcCCCcCcEEeeeeeeECCCCCCcccHHHHHHHH-HhcCCCCCCCCCCCCCcHHHHHHHHHHHcCCCC
Confidence 4667888887777667789999999997555566667899999987 54 334467899999999999999999988887
Q ss_pred CCCCCCCe--EEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHH
Q psy14428 225 PAFKDNRL--AIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMME 302 (583)
Q Consensus 225 ~~~~~~~I--~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~ 302 (583)
..+++++| ++ |+|+++|+.++..++..+. | |+|++++|+|+.|..+++.+|++++.+|+.+++++++|++.+++
T Consensus 91 ~~~~~~~i~i~~--t~G~~~al~~~~~~l~~~~-~-d~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~ 166 (405)
T 3k7y_A 91 KYIEDKKICTIQ--CIGGTGAIFVLLEFLKMLN-V-ETLYVTNPPYINHVNMIESRGFNLKYINFFDYNLIDINYDLFLN 166 (405)
T ss_dssp TTTTTTCEEEEE--EEHHHHHHHHHHHHHHTTT-C-CEEEEESSCCHHHHHHHHTTTCEEEEECCEETTTTEECHHHHHH
T ss_pred ccccccceEEEE--cCchHHHHHHHHHHHHhcC-C-CEEEEeCCCCHhHHHHHHHcCCeEEEEeccccccCCcCHHHHHH
Confidence 77888865 66 9999999999754443322 6 99999999999999999999999999998555568999999999
Q ss_pred HHHcCCCCcEEEEe-CCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEe
Q psy14428 303 DIKAMPERSILFLQ-TSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQ 381 (583)
Q Consensus 303 ~l~~~~~~~~~i~i-~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~ 381 (583)
++.+. ++++++++ ++||||||.+++.+++++|+++|++++++||+||+|.+|.+++...+..++..+.+..+++|+++
T Consensus 167 ~l~~~-~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ 245 (405)
T 3k7y_A 167 DLRNI-PNGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKNIAFSVCQ 245 (405)
T ss_dssp HHHHS-CSSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHHTTTCCEEEEE
T ss_pred HHHhC-CCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHHhcCCcEEEEe
Confidence 98653 33445555 55699999999999999999999999999999999999998742223445666655568999999
Q ss_pred cCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHh
Q psy14428 382 SFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIR 461 (583)
Q Consensus 382 S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r 461 (583)
||||+|+|||||+||+++..++++..+.+.+.+.+..+..+++++.++|.+++.+++++
T Consensus 246 S~SK~~~l~GlRiG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~--------------------- 304 (405)
T 3k7y_A 246 SFSKNMSLYGERAGALHIVCKNQEEKKIVFNNLCFIVRKFYSSPVIHTNRILCQLLNNQ--------------------- 304 (405)
T ss_dssp ECTTTSCCTTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHCH---------------------
T ss_pred eCCccCCCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCH---------------------
Confidence 99999999999999998644553222234445555566677788888888888887663
Q ss_pred hccCCCccchhhHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCCCCCcccccccccceeecCCChh
Q psy14428 462 GFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKIL----DKGSKKNWDHITNQKGMFCYTGLSAS 537 (583)
Q Consensus 462 ~~~~~~p~~g~~i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~----~~~~pg~~~~~~~~~g~f~~~~l~~~ 537 (583)
.+.+.|.+++++++++|.++|+.+.+.|+ +++.|+.|.+..+++|||+|.+++.+
T Consensus 305 ---------------------~l~~~~~~~l~~~~~~~~~~R~~l~~~L~~~~~~~g~~~~~~~~~p~gg~f~~~~l~~~ 363 (405)
T 3k7y_A 305 ---------------------NLKLNWIKELSQLSQRITNNRILFFNKLETYQKKYNLNYDWNVYKKQRGLFSFVPLLAK 363 (405)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCGGGGSSCCSSEEECGGGGG
T ss_pred ---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCccccCCceEEEecCCCHH
Confidence 23457888999999999999999999999 88878889999999999999988765
Q ss_pred hhhhhhhhhhHHHHHHHHhhcCCCccccccccCCcceeecCCCCC
Q psy14428 538 QGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSAS 582 (583)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (583)
..++ + ++.++.+. +.|+|||++++++
T Consensus 364 ~~~~-----L-~~~gV~v~-------------p~~Ris~a~~~~~ 389 (405)
T 3k7y_A 364 IAEH-----L-KTHHIYII-------------NNGRINVSGITKN 389 (405)
T ss_dssp GTTT-----T-TTTTEECC-------------TTSEEEGGGCCTT
T ss_pred HHHH-----H-HHCCEeec-------------CCCeEEEeccCHH
Confidence 4433 2 22222221 2368999998876
|
| >4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-52 Score=446.60 Aligned_cols=373 Identities=37% Similarity=0.631 Sum_probs=305.2
Q ss_pred ccchhhHhhccccccCCCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCC
Q psy14428 145 EDIKPLKQQLKGFNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDF 224 (583)
Q Consensus 145 ~~~~~i~~l~~~~~~~~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g 224 (583)
.|+++|+.+...++++.++ +|||++|.+.++.|.|++++.|++|.+.+.+.+..+.|.|..|+++||+++++++.+..
T Consensus 27 ~p~d~i~~l~~~~~~d~~~-kinLgvG~y~d~~g~~~vl~~Vk~A~~~~~~~~~~~~Y~p~~G~p~lr~aia~~~~g~~- 104 (420)
T 4h51_A 27 QAPDVIFDLAKRAAAAKGP-KANLVIGAYRDEQGRPYPLRVVRKAEQLLLDMNLDYEYLPISGYQPFIDEAVKIIYGNT- 104 (420)
T ss_dssp CCCCHHHHHHHHHHHCCSS-CEECCSCCCBCTTSCBCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHC---
T ss_pred CCCChHHHHHHHHhcCCCC-CEEeecCcccCCCCCCCCCHHHHHHHHHHhcCCCCCCCCCcCChHHHHHHHHHHhcCCC-
Confidence 3678999998888777766 89999999988999998999999999988877666789999999999999999986543
Q ss_pred CCCCCCCeEEEecCCchhHHHHHHHHHH-HhCCCCCEEEEcCCCChhhHHHHhhcCCe-EEEEecccCCCCCCChhhHHH
Q psy14428 225 PAFKDNRLAIVQGISGSGSLRVGTAFLE-RFYPGVKTVYFPTPTWNGHVRFCTDSRLN-VGAYRYFDNKTNGLDFAGMME 302 (583)
Q Consensus 225 ~~~~~~~I~i~~t~G~~~al~l~~~~l~-~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~-~~~v~~~d~~~~g~d~~~l~~ 302 (583)
...+++..++|.|+++|+..++.++. .+.+|||+|++++|+|++|..+++.+|++ +..+++.+++++++|++.+.+
T Consensus 105 --~~~~~~~~~qt~ggtga~~~a~~~l~~~~~~pgd~V~ip~P~w~~y~~i~~~aG~~~V~~~~~~~~~~~~~d~~~~~~ 182 (420)
T 4h51_A 105 --VELENLVAVQTLSGTGAVSLGAKLLTRVFDAETTPIYLSDPTWPNHYGVVKAAGWKNICTYAYYDPKTVSLNFEGMKK 182 (420)
T ss_dssp ---CGGGEEEEEEEHHHHHHHHHHHHHTTTSCTTTSCEEEEESCCTHHHHHHHHTTCCCEEEEECEEGGGTEECHHHHHH
T ss_pred --ccccccceeeecCchHHHHHHHHHHHHhcCCCCCEEEEecCCchhHHHHHHHcCCeEEEeeccccccccCCCHHHHHH
Confidence 45577888889999999988765543 35568999999999999999999999997 445666566678899999999
Q ss_pred HHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEec
Q psy14428 303 DIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQS 382 (583)
Q Consensus 303 ~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S 382 (583)
.++..+++++++++++||||||.+++.++|++|+++|+++++++|+||+|.+|.+++.+.+...+..+.+..++++++.|
T Consensus 183 ~l~~~~~~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s 262 (420)
T 4h51_A 183 DILAAPDGSVFILHQCAHNPTGVDPSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARRGIEVLLAQS 262 (420)
T ss_dssp HHHHSCSSCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEE
T ss_pred HHhccCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhhCceEEEEec
Confidence 99888899999999999999999999999999999999999999999999999998632233445555667789999999
Q ss_pred CcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhh
Q psy14428 383 FSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRG 462 (583)
Q Consensus 383 ~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~ 462 (583)
|||+|+|+|+|+||+++.+++.+ ...+..+++..+.+.
T Consensus 263 ~SK~~~~~G~RvG~~~~~~~~~~------------------------------------------~~~~~~~~l~~~~r~ 300 (420)
T 4h51_A 263 FSKNMGLYSERAGTLSLLLKDKT------------------------------------------KRADVKSVMDSLIRE 300 (420)
T ss_dssp CTTTSCCGGGCEEEEEEECSCHH------------------------------------------HHHHHHHHHHHHHHT
T ss_pred cccccccccCceEEEEecccCHH------------------------------------------HHHHHHHHHHHhhhc
Confidence 99999999999999999433221 112233344445556
Q ss_pred ccCCCccchhhHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCChhhhhhh
Q psy14428 463 FYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSASQGMSN 542 (583)
Q Consensus 463 ~~~~~p~~g~~i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~~~~~~~ 542 (583)
.++++|..|..++..++.++.+..+|.++++.|+++|.++|+.|.+.|++.+.|+.|.++.+++|||+|+++++++++.
T Consensus 301 ~~s~~p~~~a~~~~~~l~d~~l~~~~~~~~~~m~~r~~~~R~~l~~~L~~~g~~~~~~~i~~q~GmF~~~gls~e~v~~- 379 (420)
T 4h51_A 301 EYTCPPAHGARLAHLILSNNELRKEWEAELSAMAERIRTMRRTVYDELLRLQTPGSWEHVINQIGMFSFLGLSKAQCEY- 379 (420)
T ss_dssp TTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCTHHHHCCSSEEECCCCHHHHHH-
T ss_pred ccCcchHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCeecCCCceEEecCcCHHHHHH-
Confidence 6667777777777777777888899999999999999999999999999999999999999999999999999987643
Q ss_pred hhhhhHHHHHHHHhhcCCCccccccccCCcceeecCCCCC
Q psy14428 543 RISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSAS 582 (583)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (583)
++ +.++++. +.|++||++++++
T Consensus 380 ----L~-e~~Vy~~-------------~~gRis~Agl~~~ 401 (420)
T 4h51_A 380 ----CQ-NHNIFIT-------------VSGRANMAGLTHE 401 (420)
T ss_dssp ----HH-HTTEECC-------------TTCEEEGGGCCHH
T ss_pred ----HH-hCCEEEc-------------CCCEEEeccCCHH
Confidence 22 2222221 2268999988764
|
| >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-46 Score=398.36 Aligned_cols=378 Identities=49% Similarity=0.875 Sum_probs=302.3
Q ss_pred cchhhHhhccccccCCCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCC
Q psy14428 146 DIKPLKQQLKGFNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFP 225 (583)
Q Consensus 146 ~~~~i~~l~~~~~~~~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~ 225 (583)
++++++.+...++...+++.|+|+.|.+.+..++|++.+.+.+++.++.......+|++..|.++||+++++++.+++|+
T Consensus 11 ~~~~i~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~ 90 (401)
T 7aat_A 11 PPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASAELALGENSE 90 (401)
T ss_dssp CCCHHHHHHHHHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHCTTCH
T ss_pred CCChhHHHHHHHhhCCCCCceeeeeeeEECCCCCEechHHHHHHHHHhcccccccCCCCCCCCHHHHHHHHHHhcCCCcc
Confidence 35567777776666677889999999984445666667889998888775434678999999999999999999999999
Q ss_pred CCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHH
Q psy14428 226 AFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIK 305 (583)
Q Consensus 226 ~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~ 305 (583)
.+++++|++++|+|+++++.++...+..+.++||+|++++|+|..+...++..|++++.+|+.+++++++|++.+++.++
T Consensus 91 ~~~~~~i~~v~t~G~~~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~ 170 (401)
T 7aat_A 91 AFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDIS 170 (401)
T ss_dssp HHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHT
T ss_pred ccccCceEEEecCcchHHHHHHHHHHHHhccCCCEEEEcCCCchhHHHHHHHcCCeeEeeeeeccccCccCHHHHHHHHH
Confidence 99999997777999999999876555556677999999999999999999999999999998444468999999999987
Q ss_pred cCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcc
Q psy14428 306 AMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSK 385 (583)
Q Consensus 306 ~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK 385 (583)
+..+++++++++|||||||.+++.+++++|+++|+++|++||+||+|.++.+++.+.+..++..+.+..+++|+++||||
T Consensus 171 ~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK 250 (401)
T 7aat_A 171 KIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAK 250 (401)
T ss_dssp TSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTT
T ss_pred hCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHhcCCcEEEEecCCc
Confidence 76678899999999999999999999999999999999999999999999987521123455555566789999999999
Q ss_pred cccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccC
Q psy14428 386 NMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYS 465 (583)
Q Consensus 386 ~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~ 465 (583)
+||++|+|+||+++...+++..+.+++.+....+....+++.+.|.+++.+++++
T Consensus 251 ~~~~~G~RiG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------------------------- 305 (401)
T 7aat_A 251 NMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTP------------------------- 305 (401)
T ss_dssp TSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCH-------------------------
T ss_pred ccccccCceEEEEEEeCCHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCCH-------------------------
Confidence 9999999999999743332211236677777666777777788887777777653
Q ss_pred CCccchhhHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCChhhhhhhhhh
Q psy14428 466 NPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSASQGMSNRIS 545 (583)
Q Consensus 466 ~~p~~g~~i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~~~~~~~~~~ 545 (583)
.+...|.++++++++++.++|+.+.+.|++.+.++.+.+..+++|+|.|.+++.+.+..
T Consensus 306 -----------------~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 364 (401)
T 7aat_A 306 -----------------ELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLKPEQVER---- 364 (401)
T ss_dssp -----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHCCSSEEECCCCHHHHHH----
T ss_pred -----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceecCCcceEEecCCCHHHHHH----
Confidence 23456777889999999999999999999987666677788999999999887654432
Q ss_pred hhHHHHHHHHhhcCCCccccccccCCcceeecCCCCCC
Q psy14428 546 SIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSASQ 583 (583)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (583)
+.++.+..+ .+.+++||+.+++++
T Consensus 365 -ll~~~gi~v-------------~~~~Ris~~~~~~~~ 388 (401)
T 7aat_A 365 -LTKEFSIYM-------------TKDGRISVAGVASSN 388 (401)
T ss_dssp -HHHHHCEEC-------------CTTCEEEGGGCCTTT
T ss_pred -HHHhCCEec-------------cCCCeEEeccCChhh
Confidence 222222111 123589998888764
|
| >4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-45 Score=389.25 Aligned_cols=374 Identities=37% Similarity=0.666 Sum_probs=295.2
Q ss_pred cchhhHhhccccccCCCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCC
Q psy14428 146 DIKPLKQQLKGFNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFP 225 (583)
Q Consensus 146 ~~~~i~~l~~~~~~~~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~ 225 (583)
++++++.+...+.+...+++|||+.|.+.++.+.+++++.+.+++.+........+|++..|.++||+++++++....+.
T Consensus 32 ~~~~i~~~~~~~~~~~~~~~i~l~~G~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~ 111 (420)
T 4f4e_A 32 PRDPILGLNEAFNADTRPTKVNLGVGVYTNEDGKIPLLRAVRDAEKARVEAGLPRGYLPIDGIAAYDASVQKLLLGDDSP 111 (420)
T ss_dssp CCCHHHHHHHHHHHCCCSSCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTCCCCCCCCTTCCHHHHHHHHHHHHCTTCH
T ss_pred CCChHHHHHHHHHhcCCCCcEEeeeeeeECCCCCccCcHHHHHHHHHHhccCCCCCCCCCCCcHHHHHHHHHHhcCCCcc
Confidence 46678888776665667899999999654444555567899999988887644678999999999999999999887776
Q ss_pred CCCCC--CeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHH
Q psy14428 226 AFKDN--RLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMED 303 (583)
Q Consensus 226 ~~~~~--~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~ 303 (583)
.++++ +|++ |+|+++|+.++..++..+ .+||+|++++|+|..+...++..|++++.+|+.+++++++|++.+++.
T Consensus 112 ~~~~~~~~i~~--t~G~t~al~~~~~~~~~~-~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~ 188 (420)
T 4f4e_A 112 LIAAGRVVTAQ--ALGGTGALKIGADFLRTL-NPKAKVAISDPSWENHRALFDMAGFEVVAYPYYDAKTNGVNFDGMLAA 188 (420)
T ss_dssp HHHTTCEEEEE--EEHHHHHHHHHHHHHHHH-CTTCCEEEEESCCHHHHHHHHHTTCCEEEEECEETTTTEECHHHHHHH
T ss_pred ccccCceEEEE--CCccHHHHHHHHHHHHHh-CCCCEEEEeCCCcHhHHHHHHHcCCeEEEeeeeccccCccCHHHHHHH
Confidence 67889 8999 999999999975444434 559999999999999999999999999999985455688999999999
Q ss_pred HHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecC
Q psy14428 304 IKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSF 383 (583)
Q Consensus 304 l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~ 383 (583)
+++..++++++++++||||||.+++.+++++|+++|+++|++||+||+|.+|.+++. .+..++..+.+..+++|+++||
T Consensus 189 l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~-~~~~~~~~~~~~~~~~i~~~S~ 267 (420)
T 4f4e_A 189 LNGYEPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIE-ADAAAVRLFAAANLNVFVSSSF 267 (420)
T ss_dssp HTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTT-GGGHHHHHHHHTTCCEEEEEEC
T ss_pred HHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccccccccCCcc-hhhHHHHHHHhcCCCEEEEEeC
Confidence 965557889999999999999999999999999999999999999999999999742 2455677766667899999999
Q ss_pred cccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhc
Q psy14428 384 SKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGF 463 (583)
Q Consensus 384 SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~ 463 (583)
||+||++|+|+||+++.+++++..+.++..++...+..+.+++.+.|.+++.++++.
T Consensus 268 SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----------------------- 324 (420)
T 4f4e_A 268 SKSFSLYGERVGALSIITDSKDEAARVLSQLKRVIRTNYSNPPTHGGAIVAAVLASP----------------------- 324 (420)
T ss_dssp TTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHCH-----------------------
T ss_pred CccCcCcCCCcEEEEEEcCCHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhcCH-----------------------
Confidence 999999999999998643443212223444554555667777888888887777653
Q ss_pred cCCCccchhhHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCChhhhhhhh
Q psy14428 464 YSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSASQGMSNR 543 (583)
Q Consensus 464 ~~~~p~~g~~i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~~~~~~~~ 543 (583)
.+...|.++++++++++.++|+.+.+.|++.+.++++.+..+++|+|+|..++.+.+..
T Consensus 325 -------------------~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-- 383 (420)
T 4f4e_A 325 -------------------ELRASWVQELGEMRDRIRAMRNGLVERLKAAGIERDFSFINAQRGMFSYSGLTSAQVDR-- 383 (420)
T ss_dssp -------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCTHHHHSCSSEEECCCCHHHHHH--
T ss_pred -------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceeECCCccEEEEeCCCHHHHHH--
Confidence 23345777889999999999999999999976544577788999999999987654332
Q ss_pred hhhhHHHHHHHHhhcCCCccccccccCCcceeecCCCCCC
Q psy14428 544 ISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSASQ 583 (583)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (583)
+.++.+..+. +.|++||+.+++++
T Consensus 384 ---~l~~~gI~v~-------------~~~Ris~~~~~~~~ 407 (420)
T 4f4e_A 384 ---LREEFGIYAV-------------STGRICVAALNTRN 407 (420)
T ss_dssp ---HHHHHCEECC-------------TTSEEEGGGCCTTT
T ss_pred ---HHHhCCEEec-------------CCCeEEEecCCHHH
Confidence 2222222221 12588888877764
|
| >3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-44 Score=390.33 Aligned_cols=378 Identities=35% Similarity=0.646 Sum_probs=300.3
Q ss_pred cchhhHhhccccccCCCCCccccCCccccCCCCCCCCChHHHHHHHHHh--ccCCCCCCCCCCCCHHHHHHHHHHHhCCC
Q psy14428 146 DIKPLKQQLKGFNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIY--EKNLDHEYANIGGDAKFCKLAAQLAYGED 223 (583)
Q Consensus 146 ~~~~i~~l~~~~~~~~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~--~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~ 223 (583)
+.++++.+...++++.++.+|+|+.|.+.+..+++++.+.+.+++.++. ......+|.+..|.++||+++++++....
T Consensus 32 ~~~~i~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~v~~av~~a~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~g~~ 111 (448)
T 3meb_A 32 PPDAILNLTVLYNADTNPKKVNLGVGAYRDESGKPWILPAVKEAEAIISSDLSKYNKEYPPVAGFPLFLEAAQFLMFGKD 111 (448)
T ss_dssp CCCTTHHHHHHHHHCCCTTCEEESSCCCCCTTSCCCCCHHHHHHHHHHHHCTTTTCCSCCCTTCCHHHHHHHHHHHHCTT
T ss_pred CCChHHHHHHHHHhCCCCCeEEeecccccCCCCCEechHHHHHHHHHHhhcccCCCCCCCCCcchHHHHHHHHHHhcCCC
Confidence 4667888888777778888999999999555566778899999988776 22336789999999999999999995333
Q ss_pred CCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHh----hcCCeEEEEecccCC-CCCCChh
Q psy14428 224 FPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCT----DSRLNVGAYRYFDNK-TNGLDFA 298 (583)
Q Consensus 224 g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~----~~G~~~~~v~~~d~~-~~g~d~~ 298 (583)
...+++++|+++||+|+++|+.++..++..+. +||+|++++|+|..+...++ ..|++++.+|+.|++ ++++|++
T Consensus 112 ~~~~~~~~i~~~~t~ggt~al~l~~~~~~~~~-~gd~Vlv~~p~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~~~~~d~e 190 (448)
T 3meb_A 112 SKAAQEGRIASCQSLSGTGSLHIGFEFLHLWM-PKAEFYMPSTTWPNHYGIYDKVFNKLKVPYKEYTYLRKDGELEIDFS 190 (448)
T ss_dssp CHHHHTTCEEEEEESHHHHHHHHHHHHHHHHC-TTCCEEEESSCCTHHHHHHHHHHCTTTSCCEEECCBCTTSCSSBCHH
T ss_pred ccccCcCcEEEEECCcHHHHHHHHHHHHHHhC-CCCEEEECCCCCHhHHHHHHhhHHhCCCeEEEEeccccccCCCcCHH
Confidence 22345799999999999999998654444444 59999999999999999999 999999999985554 5899999
Q ss_pred hHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEE
Q psy14428 299 GMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLC 378 (583)
Q Consensus 299 ~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi 378 (583)
.+++.+.+..++++++++++||||||.+++.+++++|+++|+++|+++|+||+|.+|.+++.+.+..++..+.+..+++|
T Consensus 191 ~l~~~l~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i 270 (448)
T 3meb_A 191 NTKKDIQSAPEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRMFVDAGVEVL 270 (448)
T ss_dssp HHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHHHHHTTCCEE
T ss_pred HHHHHHHhCCCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEecccccccCCCcccCchhHHHHhhcCCcEE
Confidence 99999976556789999999999999999999999999999999999999999999998752112345666656678999
Q ss_pred EEecCcccccccCccceEEEEEc--------CCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHH
Q psy14428 379 LAQSFSKNMGLYGERVGTFSVLT--------PTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETE 450 (583)
Q Consensus 379 ~i~S~SK~~~l~GlRiG~lv~~~--------p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~ 450 (583)
+++||||+||++|+|+||+..++ ++++..+++++.+....+..+.+++.++|.+++.+++++
T Consensus 271 ~~~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~---------- 340 (448)
T 3meb_A 271 VAQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQIRKTWSMSAIHGAYIVQVIVHDK---------- 340 (448)
T ss_dssp EEEECTTTSCCGGGCCEEEEEECCCCSSSHHHHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSH----------
T ss_pred EEecccccCCCccccceeeeeeeccccccccCCHHHHHHHHHHHHHHHhcccCCccHHHHHHHHHHhcCh----------
Confidence 99999999999999999984333 222222267777777777788888888888888888763
Q ss_pred HHHHHHHHHHhhccCCCccchhhHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-----Cccccccc
Q psy14428 451 RIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKK-----NWDHITNQ 525 (583)
Q Consensus 451 ~~~~~l~~~~r~~~~~~p~~g~~i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg-----~~~~~~~~ 525 (583)
.+...|.++++++++++.++|+.+.+.|++.+.|| .|.+..++
T Consensus 341 --------------------------------~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~ 388 (448)
T 3meb_A 341 --------------------------------RLLQMFYDNVKEMSARIHRMRSLLHASLAKRKTPGPGSKGTWDHILTA 388 (448)
T ss_dssp --------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSTTTCCCTHHHHC
T ss_pred --------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCcccccceeCCC
Confidence 23456888899999999999999999999987777 58888899
Q ss_pred ccceeecCCChhhhhhhhhhhhHHHHHHHHhhcCCCccccccccCCcceeecCCCCCC
Q psy14428 526 KGMFCYTGLSASQGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSASQ 583 (583)
Q Consensus 526 ~g~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (583)
+|+|+|.+++.+.... +.++.+..+ ..|+ |++||+++++++
T Consensus 389 ~g~~~~~~~~~~~~~~-----ll~~~gV~v-~~G~-----------gRis~a~~~~~~ 429 (448)
T 3meb_A 389 IGMFTFTGLTPEHVDY-----LKEKWSIYL-VKAG-----------GRMSMCGLTESN 429 (448)
T ss_dssp CSSEEECCCCHHHHHH-----HHHHHCEEE-CSGG-----------GEEEGGGCCTTT
T ss_pred ceEEEecCCCHHHHHH-----HHHhCCEEE-eCCC-----------cEEEEecCCHHH
Confidence 9999999997644332 223322222 1111 588988887764
|
| >4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-44 Score=381.07 Aligned_cols=371 Identities=39% Similarity=0.709 Sum_probs=288.2
Q ss_pred cchhhHhhccccccCCCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCC
Q psy14428 146 DIKPLKQQLKGFNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFP 225 (583)
Q Consensus 146 ~~~~i~~l~~~~~~~~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~ 225 (583)
++++++.+...+++...++.|+|+.|.+.+..+++.+.+.+.++ . .....+|.+..|.++||+++++++.+..+.
T Consensus 24 ~~~~i~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~v~~a~~~a----~-~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~ 98 (409)
T 4eu1_A 24 KPDPILGLGQDFRMDPAKRKVNLSIGVYRDDADQPFVLECVKQA----T-LGTNMDYAPVTGIASFVEEAQKLCFGPTCA 98 (409)
T ss_dssp ---CHHHHHHHHHHCCCSSCEECCCSSCCCTTSCCCCCHHHHTC----C-CCSCCCCCCTTCCHHHHHHHHHHHHCSSCH
T ss_pred CCChHHHHHHHHhhCCCcCceeeeeeEEECCCCCEeecHHHHhc----C-ccccccCCCCCCcHHHHHHHHHHHcCCCch
Confidence 35567777777676778899999999983333434444444444 2 233678999999999999999999655555
Q ss_pred CCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHH
Q psy14428 226 AFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIK 305 (583)
Q Consensus 226 ~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~ 305 (583)
.+++++|..++|.|+++++.++..++..+.++||+|++++|+|..+...++..|++++.+|+.+++++++|++.+++.++
T Consensus 99 ~~~~~~i~~~~~~~g~ga~~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~ 178 (409)
T 4eu1_A 99 ALRDGRIASCQTLGGTGALRIGGDLLNRFVANCNRIYGPDVGYPNHESIFAKAGMELTPYSYYDPATKGLNLAGMLECLD 178 (409)
T ss_dssp HHHTTCEEEEEESHHHHHHHHHHHHGGGTSSSCCEEEEESSCCTHHHHHHHHTTCEEEEECCEETTTTEECHHHHHHHHH
T ss_pred hhccCceeeeecccchHHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHcCCeEEEEEeecCcCCcCcHHHHHHHHH
Confidence 55688995555999999999876666677788999999999999999999999999999998545568899999999997
Q ss_pred cCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcc
Q psy14428 306 AMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSK 385 (583)
Q Consensus 306 ~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK 385 (583)
+..++++++++||||||||.+++.+++++|+++|+++|++||+||+|.+|.+++...+..++..+.+..+++|+++||||
T Consensus 179 ~~~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK 258 (409)
T 4eu1_A 179 KAPEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVPNLIVAQSFSK 258 (409)
T ss_dssp HSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHTTSSCCEEEEECTT
T ss_pred hCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHHHhhCCcEEEEecCcc
Confidence 65557788889999999999999999999999999999999999999999987511123455555556789999999999
Q ss_pred cccccCccceEE--EEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhc
Q psy14428 386 NMGLYGERVGTF--SVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGF 463 (583)
Q Consensus 386 ~~~l~GlRiG~l--v~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~ 463 (583)
+||++|+|+||+ ++ ++++..+.+++.+....+..+.+++.+.|.++..+++++.
T Consensus 259 ~~g~~G~riG~~~~v~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---------------------- 314 (409)
T 4eu1_A 259 NFGLYGHRCGALHIST--ASAEEAKRLVSQLALLIRPMYNNPPLYGAWVVSSILKDPQ---------------------- 314 (409)
T ss_dssp TSSCGGGCCEEEEEEC--SSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHH----------------------
T ss_pred cccCccCCceEEEEEe--CCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhCCHH----------------------
Confidence 999999999998 55 5532222377888777777788888999999888887632
Q ss_pred cCCCccchhhHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCChhhhhhhh
Q psy14428 464 YSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSASQGMSNR 543 (583)
Q Consensus 464 ~~~~p~~g~~i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~~~~~~~~ 543 (583)
+...|.++++++++++.++|+.+.+.|++.+.|+.+.+..+++|+|.|.+++.+....
T Consensus 315 --------------------~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 372 (409)
T 4eu1_A 315 --------------------LTALWKKELKQMSSRIAEVRKRLVSELKACGSVHDWSHIERQVGMMAYTGLTREQVEL-- 372 (409)
T ss_dssp --------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHSCSSEEECCCCHHHHHH--
T ss_pred --------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceecCCceEEEEeCCCHHHHHH--
Confidence 3346777888999999999999999999987777787788999999998887543221
Q ss_pred hhhhHHHHHHHHhhcCCCccccccccCCcceeecCCCCCC
Q psy14428 544 ISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSASQ 583 (583)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (583)
+.++.+..+. +.+++|++.+++++
T Consensus 373 ---ll~~~gv~v~-------------p~~Ri~~~~~~~~~ 396 (409)
T 4eu1_A 373 ---LRSEYHIYMT-------------LNGRAAVSGLNSTN 396 (409)
T ss_dssp ---HHHHHCEECC-------------TTCEEEGGGCCTTT
T ss_pred ---HHHcCCEEEc-------------CCCEEEEEecCHhh
Confidence 2222221111 22588998888764
|
| >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-42 Score=366.12 Aligned_cols=343 Identities=37% Similarity=0.645 Sum_probs=276.8
Q ss_pred cchhhHhhccccccCCCCCccccCCccccCCCCCCCCChHHHHHHHH-HhccCCCCCCCCCCCCHHHHHHHHHHHhCCCC
Q psy14428 146 DIKPLKQQLKGFNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERR-IYEKNLDHEYANIGGDAKFCKLAAQLAYGEDF 224 (583)
Q Consensus 146 ~~~~i~~l~~~~~~~~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~-~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g 224 (583)
+.++++.+...+..+..++.|+|+.|.+.++.+++++++.+.+++.+ ........+|++..|.++||+++++++...++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~i~l~~g~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~ 88 (397)
T 3fsl_A 9 AGDPILTLMERFKEDPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADH 88 (397)
T ss_dssp CCCHHHHHHHHHHTCCCSCCEECSSCCCCCTTSCCCCCHHHHHHHHHHHHSCCCCCCCCCTTCCHHHHHHHHHHHHCTTC
T ss_pred CCCchhhHHHHHhcCCCCCeEEEeeeEEECCCCCccCcHHHHHHHHhhccCccccccCCCCCchHHHHHHHHHHHhcCCc
Confidence 45677777766666677889999999754444545466899999988 77654467899999999999999999988777
Q ss_pred CCCCCC--CeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHH
Q psy14428 225 PAFKDN--RLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMME 302 (583)
Q Consensus 225 ~~~~~~--~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~ 302 (583)
..++++ +|++ |+|+++++.++..++..+ .+||+|++++|+|..+...++..|++++.+|+.+++++++|++.+++
T Consensus 89 ~~~~~~~~~i~~--t~g~~~a~~~~~~~~~~~-~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~ 165 (397)
T 3fsl_A 89 PVLKQQRVATIQ--TLGGSGALKVGADFLKRY-FPESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLA 165 (397)
T ss_dssp HHHHTTCEEEEE--ESHHHHHHHHHHHHHHHH-CTTCCEEEESSCCHHHHHHHHHTTCCEEEECCEETTTTEECHHHHHH
T ss_pred ccccccceEEEE--cCCcHHHHHHHHHHHHhc-CCCCeEEEeCCCchhHHHHHHHcCCceEEEeeeeccCCcCcHHHHHH
Confidence 677899 8999 999999999874444334 45999999999999999999999999999998444568899999999
Q ss_pred HHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEec
Q psy14428 303 DIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQS 382 (583)
Q Consensus 303 ~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S 382 (583)
.+.+..++++++++++||||||.+++.+++++|+++|+++|++||+||+|.++.++.. .+..++..+.+..+++|+++|
T Consensus 166 ~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~S 244 (397)
T 3fsl_A 166 TLKTLQAGSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGME-EDAYAIRAIASAGLPALVSNS 244 (397)
T ss_dssp HHTTCCTTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTT-GGGHHHHHHHHTTCCEEEEEE
T ss_pred HHHhCCCCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCcc-cccHHHHHHHhcCCCEEEEec
Confidence 9965556789999999999999999999999999999999999999999999998731 244566666667789999999
Q ss_pred CcccccccCccceEEEEEcCCchhHHHHHHH----HHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHH
Q psy14428 383 FSKNMGLYGERVGTFSVLTPTSDETERIMSQ----LKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKI 458 (583)
Q Consensus 383 ~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~----l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~ 458 (583)
|||++|++|+|+||+++.+++ ++++++ +....+..+.+++.++|.+++.++.+..
T Consensus 245 ~SK~~~~~G~riG~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----------------- 303 (397)
T 3fsl_A 245 FSKIFSLYGERVGGLSVMCED----AEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEA----------------- 303 (397)
T ss_dssp CTTTTTCGGGCCEEEEEECSS----HHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHTSHH-----------------
T ss_pred ccccccCcCCCeeEEEEecCC----HHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCHH-----------------
Confidence 999999999999999873333 244443 3333345566778888888888777632
Q ss_pred HHhhccCCCccchhhHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCChhh
Q psy14428 459 LIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSASQ 538 (583)
Q Consensus 459 ~~r~~~~~~p~~g~~i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~~~ 538 (583)
+...|.++++++++++.++|+.+.+.|++...++++.+..+++|+|.|..++.+.
T Consensus 304 -------------------------l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (397)
T 3fsl_A 304 -------------------------LKASWLKEVEEMRTRILAMRQELVKVLSTEMPERNFDYLLNQRGMFSYTGLSAAQ 358 (397)
T ss_dssp -------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCCTHHHHCCSSEEECCCCHHH
T ss_pred -------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceeecCCceEEEecCCCHHH
Confidence 2344667788889999999999999999876443577778899999999887644
|
| >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-41 Score=356.28 Aligned_cols=348 Identities=38% Similarity=0.725 Sum_probs=274.3
Q ss_pred chhhHhhccccccCCCCCccccCCccccCCCCCCCCChHHHHHHHH-HhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCC
Q psy14428 147 IKPLKQQLKGFNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERR-IYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFP 225 (583)
Q Consensus 147 ~~~i~~l~~~~~~~~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~-~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~ 225 (583)
+++++.+...+.+..+++.++|+.|.+.+..+.+++++.+.+++.+ ........+|.+..|.++||+++++++.+.+|+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~ 92 (412)
T 1yaa_A 13 PDALFGIKQRYGQDQRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNAAKIIFGTQSD 92 (412)
T ss_dssp CCTTHHHHHHHHTCCCSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCH
T ss_pred CCcHHHHHHHHhcCCCCCeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCcccccCCCCCCCcHHHHHHHHHHHhcCCCC
Confidence 4556666665554456788999999985445555677899999988 775434567999999999999999999877888
Q ss_pred CCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHH
Q psy14428 226 AFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIK 305 (583)
Q Consensus 226 ~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~ 305 (583)
.+++++|++++|+|+++|+.++..++..+. +||+|++++|+|..+...++..|++++.+|+.+++++++|++.+++.+.
T Consensus 93 ~~~~~~i~~~~t~g~~~a~~~~~~~~~~~~-~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~ 171 (412)
T 1yaa_A 93 ALQEDRVISVQSLSGTGALHISAKFFSKFF-PDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLDLNGFLNAIQ 171 (412)
T ss_dssp HHHTTCEEEEEEEHHHHHHHHHHHHHHHHC-TTCCEEEEESCCTTHHHHHHTTTCCEEEEECEETTTTEECHHHHHHHHH
T ss_pred CCCcceEEEEeccchHhHHHHHHHHHHHhC-CCCEEEEeCCCCccHHHHHHHcCceEEEEeeecCCCCccCHHHHHHHHH
Confidence 888999998889999999998754555555 5999999999999999999999999999998444457899999999886
Q ss_pred cCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcC---cEEEEec
Q psy14428 306 AMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVG---QLCLAQS 382 (583)
Q Consensus 306 ~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~---~vi~i~S 382 (583)
...++++++++++||||||.+++.+++++|+++|+++|++||+||+|.+|.+++...+..++..+....+ ++|+++|
T Consensus 172 ~~~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s 251 (412)
T 1yaa_A 172 KAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQS 251 (412)
T ss_dssp HSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEE
T ss_pred hCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhcCCCCcceEEEec
Confidence 5433567777899999999999999999999999999999999999999988631002234545444445 8999999
Q ss_pred CcccccccCccceEEEEEcC----CchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHH
Q psy14428 383 FSKNMGLYGERVGTFSVLTP----TSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKI 458 (583)
Q Consensus 383 ~SK~~~l~GlRiG~lv~~~p----~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~ 458 (583)
|||.+|++|+|+||+++++. +++..+.+++++....+..+.+++.+.|.++..++++..
T Consensus 252 ~sK~~~~~GlriG~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~----------------- 314 (412)
T 1yaa_A 252 FAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPE----------------- 314 (412)
T ss_dssp CTTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHH-----------------
T ss_pred cCCCCCCcCCcceEEEEEecCCCCCHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHhCCHH-----------------
Confidence 99999988999999982121 211111388888876667777889999999888886632
Q ss_pred HHhhccCCCccchhhHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCChh
Q psy14428 459 LIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSAS 537 (583)
Q Consensus 459 ~~r~~~~~~p~~g~~i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~~ 537 (583)
+...|.++++++++++.++|+.+.+.|++.+.++.+.+..+++|+|.|..++.+
T Consensus 315 -------------------------~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (412)
T 1yaa_A 315 -------------------------LTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGLTPQ 368 (412)
T ss_dssp -------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCTHHHHCCSSEEECCCCHH
T ss_pred -------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeeeeccCceEEEeeCCCHH
Confidence 123455668888899999999999999987644446677789999999887654
|
| >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-40 Score=349.40 Aligned_cols=346 Identities=35% Similarity=0.648 Sum_probs=259.2
Q ss_pred chhhHhhccccccCCCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCC
Q psy14428 147 IKPLKQQLKGFNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPA 226 (583)
Q Consensus 147 ~~~i~~l~~~~~~~~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~ 226 (583)
.++++.+...+....+++.|||+.|.+.+..+.+++++.+.+++.+.+.....++|.+..|.++||+++++++.+.++..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~ 89 (396)
T 2q7w_A 10 ADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQELLFGKGSAL 89 (396)
T ss_dssp C-----------------CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCTTCCHHHHHHHHHHHHCTTCHH
T ss_pred CchHHHHHHHHhccCCCCceecccccccCCCCCccCcHHHHHHHHhhcCcccccCCCCCCCCHHHHHHHHHHHhcCCCCc
Confidence 34455554444333456789999999654444445678899998877654345689999999999999999997766655
Q ss_pred CCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHc
Q psy14428 227 FKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKA 306 (583)
Q Consensus 227 ~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~ 306 (583)
+++++|+++.|+|+++|++++..++..+. +||+|++++|+|..+...++..|++++.+|+..++++++|++.+++.+.+
T Consensus 90 ~~~~~v~~~~~~g~~~a~~~~~~~~~~~~-~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~ 168 (396)
T 2q7w_A 90 INDKRARTAQTPGGTGALRVAADFLAKNT-SVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNE 168 (396)
T ss_dssp HHTTCEEEEEESHHHHHHHHHHHHHHHHS-CCCEEEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTT
T ss_pred cccccEEEEecccchhhHHHHHHHHHHhC-CCCEEEEcCCCchhHHHHHHHcCCceEEEecccCCCCCcCHHHHHHHHHh
Confidence 77899986569999999999754444344 59999999999999999999999999999983224578999999999864
Q ss_pred CCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCccc
Q psy14428 307 MPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKN 386 (583)
Q Consensus 307 ~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~ 386 (583)
..++++++++++||||||.+++.+++++|+++|+++|++||+||+|.++.+++. ....++..+....+++++++||||.
T Consensus 169 ~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~s~sK~ 247 (396)
T 2q7w_A 169 AQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLE-EDAEGLRAFAAMHKELIVASSYSXN 247 (396)
T ss_dssp CCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHH-HHTHHHHHHHHHCSCEEEEEECTTT
T ss_pred CCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcc-chhHHHHHHHhcCCcEEEEEecccc
Confidence 434578899999999999999999999999999999999999999999988620 0223555554446789999999999
Q ss_pred ccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCC
Q psy14428 387 MGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSN 466 (583)
Q Consensus 387 ~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~ 466 (583)
+|++|+|+||+++.+++++..+++++.+....+..+.+++.++|.++..++++..
T Consensus 248 ~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~------------------------- 302 (396)
T 2q7w_A 248 FGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDA------------------------- 302 (396)
T ss_dssp TTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHH-------------------------
T ss_pred ccccccccceEEEEcCCHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHhcChh-------------------------
Confidence 9999999999996223432223567777666666677779999999988887632
Q ss_pred CccchhhHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCCh
Q psy14428 467 PPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSA 536 (583)
Q Consensus 467 ~p~~g~~i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~ 536 (583)
+...|.++++++++++.++|+.+.+.|++.+.++.+.+..+++|+|.|..++.
T Consensus 303 -----------------l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (396)
T 2q7w_A 303 -----------------LRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTK 355 (396)
T ss_dssp -----------------HHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCCSCCTHHHHCCSSEEECCCCH
T ss_pred -----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceecCCCceEEEecCCH
Confidence 11234556777888889999999999998764434666778999999998764
|
| >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-40 Score=350.01 Aligned_cols=346 Identities=45% Similarity=0.821 Sum_probs=272.9
Q ss_pred chhhHhhccccccCCCCCccccCCccccCCCCCCCCChHHHHHHHHHhcc-CCCCCCCCCCCCHHHHHHHHHHHhCCCCC
Q psy14428 147 IKPLKQQLKGFNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEK-NLDHEYANIGGDAKFCKLAAQLAYGEDFP 225 (583)
Q Consensus 147 ~~~i~~l~~~~~~~~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~-~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~ 225 (583)
.+++..+...+++..+++.++|+.|.+.+..+.+.+++.+.+++.+...+ ...++|.+..|.++||+++++++.+.+++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~ 93 (412)
T 1ajs_A 14 PVLVFKLIADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFRTCASRLALGDDSP 93 (412)
T ss_dssp CCHHHHHHHHHHTCCCTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCH
T ss_pred CchHHHHHHHHhhcCCCCceeeccceecCCCCCccccHHHHHHHHHhhhChhhccCCCCCCCCHHHHHHHHHHHhcCCCC
Confidence 55676666655544567889999999744444455778999998887732 23567999999999999999999877788
Q ss_pred CCCCCCeEEEecCCchhHHHHHHHHHHHhCCCC-----CEEEEcCCCChhhHHHHhhcCCe-EEEEecccCCCCCCChhh
Q psy14428 226 AFKDNRLAIVQGISGSGSLRVGTAFLERFYPGV-----KTVYFPTPTWNGHVRFCTDSRLN-VGAYRYFDNKTNGLDFAG 299 (583)
Q Consensus 226 ~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~g-----d~Vlv~~P~y~~~~~~~~~~G~~-~~~v~~~d~~~~g~d~~~ 299 (583)
.+++++|++++|+|+++|+.++..++..+ .+| |+|++++|+|..+...++..|++ ++.+|+.+++++++|++.
T Consensus 94 ~~~~~~v~~~~t~gg~~a~~~~~~~~~~~-~~g~~~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~ 172 (412)
T 1ajs_A 94 ALQEKRVGGVQSLGGTGALRIGAEFLARW-YNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQG 172 (412)
T ss_dssp HHHTTCEEEEEEEHHHHHHHHHHHHHHHH-SSSSSCCCSCEEEEESCCTHHHHHHHHTTCSCEEEEECEETTTTEECHHH
T ss_pred ccCCCcEEEEECCCcHHHHHHHHHHHHHh-CcCcCCCCCeEEEcCCCcHHHHHHHHHcCCceeEEEeeecCCCCccCHHH
Confidence 78899998888999999999975444434 458 99999999999999999999999 999998323457899999
Q ss_pred HHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEE
Q psy14428 300 MMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCL 379 (583)
Q Consensus 300 l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~ 379 (583)
+++.+.....+++++++++||||||.+++.+++++|+++|+++|++||+||+|.+|.+++......++..+....+++|+
T Consensus 173 l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~ 252 (412)
T 1ajs_A 173 FLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFC 252 (412)
T ss_dssp HHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEE
T ss_pred HHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHHhccCCcEEE
Confidence 99998654457788889999999999999999999999999999999999999999886300023355555445678999
Q ss_pred EecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHH
Q psy14428 380 AQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKIL 459 (583)
Q Consensus 380 i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~ 459 (583)
+.||||.+|++|+|+||+++..++++..+.+++.+....+..+.+++.++|.++..++++..
T Consensus 253 ~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~------------------ 314 (412)
T 1ajs_A 253 AQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPE------------------ 314 (412)
T ss_dssp EEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHH------------------
T ss_pred EEecccccCCCCcceEEEEEecCCHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHcCcc------------------
Confidence 99999999988999999998222422222366666665666677778999998888886531
Q ss_pred HhhccCCCccchhhHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCC
Q psy14428 460 IRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLS 535 (583)
Q Consensus 460 ~r~~~~~~p~~g~~i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~ 535 (583)
+...|.++++++++++.++++.+.+.|++.+.|+.+.+..+++|+|.|..++
T Consensus 315 ------------------------~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (412)
T 1ajs_A 315 ------------------------LFHEWTGNVKTMADRILSMRSELRARLEALKTPGTWNHITDQIGMFSFTGLN 366 (412)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHCCSSEEECCCC
T ss_pred ------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeeEEcCCCceEEEeCCC
Confidence 1233556678888899999999999999876555566677899999998876
|
| >2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-39 Score=341.30 Aligned_cols=344 Identities=31% Similarity=0.591 Sum_probs=263.7
Q ss_pred chhhHhhccccccCCCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCC
Q psy14428 147 IKPLKQQLKGFNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPA 226 (583)
Q Consensus 147 ~~~i~~l~~~~~~~~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~ 226 (583)
+++++.+...+.....++.+||+.|.+.+..+.+++++.+.+++.+.......++|++..|.++||+++++++... .
T Consensus 10 ~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~---~ 86 (394)
T 2ay1_A 10 PDKILALMGEFRADPRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMGELILGD---G 86 (394)
T ss_dssp CCSHHHHHHHHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCSSCCHHHHHHHHHHHHGG---G
T ss_pred CccHHHHHHHHHhCCCccccccccceeeCCCCCccCcHHHHHHHHHhcCCcccCCCCCCCCcHHHHHHHHHHHhCC---C
Confidence 4455555554444456788999999975444444567899999888765434678999999999999999998532 2
Q ss_pred CCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHc
Q psy14428 227 FKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKA 306 (583)
Q Consensus 227 ~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~ 306 (583)
+++++|++++|+|+++|+.++..++..+. +||+|++++|+|..+...++..|++++.+|+..++++++|++.+++.++.
T Consensus 87 ~~~~~v~~~~~~g~~~a~~~~~~~~~~~~-~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~ 165 (394)
T 2ay1_A 87 LKSETTATLATVGGTGALRQALELARMAN-PDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAA 165 (394)
T ss_dssp CCGGGEEEEEEEHHHHHHHHHHHHHHHHC-TTCCEEEEESCCHHHHHHHHHHTCCEEEEECEETTTTEECHHHHHHHHHT
T ss_pred CCcccEEEEecCCchhHHHHHHHHHHhcC-CCCEEEEcCCCChhHHHHHHHcCCceEEEecccccCCccCHHHHHHHHHh
Confidence 37789887679999999999755544444 59999999999999999999999999999983224578999999999875
Q ss_pred CCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCccc
Q psy14428 307 MPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKN 386 (583)
Q Consensus 307 ~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~ 386 (583)
..++++++++++||||||.+++.+++++|+++|+++|++||+||+|.++.+++. .+..++..+....+++++++||||.
T Consensus 166 ~~~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~s~sK~ 244 (394)
T 2ay1_A 166 AKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLE-EDAAGTRLIASRIPEVLIAASCSKN 244 (394)
T ss_dssp CCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHH-HHHHHHHHHHHHCSSEEEEEECTTT
T ss_pred CCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCccccccCcc-cchHHHHHHhhcCCCEEEEEeccCC
Confidence 444578888999999999999999999999999999999999999999987520 0233455444446789999999999
Q ss_pred ccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCC
Q psy14428 387 MGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSN 466 (583)
Q Consensus 387 ~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~ 466 (583)
+|++|+|+||+++.+++++..+.+++.+....+..+.+++.++|.++..++++..
T Consensus 245 ~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~------------------------- 299 (394)
T 2ay1_A 245 FGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPE------------------------- 299 (394)
T ss_dssp TTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHH-------------------------
T ss_pred CcCcCCccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhcChH-------------------------
Confidence 9999999999997333432112344555544556666778888888888876532
Q ss_pred CccchhhHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCChh
Q psy14428 467 PPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSAS 537 (583)
Q Consensus 467 ~p~~g~~i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~~ 537 (583)
+...|.++++++++++.++|+.+.+.|++.+.++.+.+..+++|+|.|..++.+
T Consensus 300 -----------------l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~ 353 (394)
T 2ay1_A 300 -----------------LRADWMAELEAVRSGMLRLREQLAGELRDLSGSDRFGFVAEHRGMFSRLGATPE 353 (394)
T ss_dssp -----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTHHHHCCSSEEECCCCHH
T ss_pred -----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeeEEcCCceEEEeeCCCHH
Confidence 123355567788888999999999999887544346666788999999988753
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-40 Score=346.04 Aligned_cols=298 Identities=16% Similarity=0.143 Sum_probs=246.0
Q ss_pred CCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCch
Q psy14428 162 HPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGS 241 (583)
Q Consensus 162 ~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~ 241 (583)
.++.|+|+.|+++.. +++.+.+++.+.+... ..+|++..|.++||+++++++...+|+.+++++|++ |+|++
T Consensus 30 ~~~~i~l~~~~~~~~-----~~~~v~~a~~~~~~~~-~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~--t~g~~ 101 (385)
T 1b5p_A 30 GVDLVALTAGEPDFD-----TPEHVKEAARRALAQG-KTKYAPPAGIPELREALAEKFRRENGLSVTPEETIV--TVGGS 101 (385)
T ss_dssp TCCCEECCCSSCSSC-----CCHHHHHHHHHHHHTT-CCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEE--ESHHH
T ss_pred CCCEEEecCCCCCCC-----CCHHHHHHHHHHHhcC-CCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHHEEE--cCChH
Confidence 467899999988522 4577888877766543 457999899999999999999988899899999999 99999
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccC-CCCCCChhhHHHHHHcCCCCcEEEEeCCCC
Q psy14428 242 GSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDN-KTNGLDFAGMMEDIKAMPERSILFLQTSSH 320 (583)
Q Consensus 242 ~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~-~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~ 320 (583)
+++.++ +..++.+||+|++++|+|..+...++..|++++.+|+ ++ +++++|++.+++.+ .+++++++++|||
T Consensus 102 ~al~~~---~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~-~~~~~~~~d~~~l~~~l---~~~~~~v~~~~p~ 174 (385)
T 1b5p_A 102 QALFNL---FQAILDPGDEVIVLSPYWVSYPEMVRFAGGVVVEVET-LPEEGFVPDPERVRRAI---TPRTKALVVNSPN 174 (385)
T ss_dssp HHHHHH---HHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEC-CGGGTTCCCHHHHHTTC---CTTEEEEEEESSC
T ss_pred HHHHHH---HHHhcCCCCEEEEcCCCchhHHHHHHHcCCEEEEeec-CcccCCCCCHHHHHHhc---CCCCEEEEEeCCC
Confidence 999985 4455677999999999999999999999999999999 44 45678998887766 4568899999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEE
Q psy14428 321 NPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVL 400 (583)
Q Consensus 321 NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~ 400 (583)
||||.+++.+++++|+++|+++|++||+||+|.++.+++ ...++..+ +. +++|+++||||.+|++|+|+||+++
T Consensus 175 NPtG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~---~~~~~~~~-~~-~~~i~~~s~SK~~~~~G~RiG~~~~- 248 (385)
T 1b5p_A 175 NPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEG---EHFSPGRV-AP-EHTLTVNGAAKAFAMTGWRIGYACG- 248 (385)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSS---CCCCGGGT-CT-TTEEEEEESTTTTTCGGGCCEEEEC-
T ss_pred CCCCCCcCHHHHHHHHHHHHHcCCEEEEEccchhcccCC---CCCCHHHc-CC-CCEEEEEechhhcCCcccceEEEEe-
Confidence 999999999999999999999999999999999998864 12233333 22 7899999999999999999999999
Q ss_pred cCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHhcC
Q psy14428 401 TPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEILS 480 (583)
Q Consensus 401 ~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~l~ 480 (583)
+ +++++++...+.....+++.+.|.++..++++...
T Consensus 249 -~-----~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~-------------------------------------- 284 (385)
T 1b5p_A 249 -P-----KEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEA-------------------------------------- 284 (385)
T ss_dssp -C-----HHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHH--------------------------------------
T ss_pred -C-----HHHHHHHHHHHhhccCCCCHHHHHHHHHHHhCCCc--------------------------------------
Confidence 7 58999998887777778999999988887754100
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCC
Q psy14428 481 DPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLS 535 (583)
Q Consensus 481 ~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~ 535 (583)
. .++++++++++.++|+.+.+.|++++ +.+..+++|+|.|..++
T Consensus 285 ----~---~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~ 328 (385)
T 1b5p_A 285 ----S---RAFVEMAREAYRRRRDLLLEGLTALG----LKAVRPSGAFYVLMDTS 328 (385)
T ss_dssp ----H---HHHHHHHHHHHHHHHHHHHHHHHHHT----CCBCCCSBTTEEEEECT
T ss_pred ----c---hHHHHHHHHHHHHHHHHHHHHHHHCC----CeecCCCeeEEEEEecC
Confidence 0 12255667777888999999998863 55667889999997764
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-39 Score=347.57 Aligned_cols=305 Identities=14% Similarity=0.148 Sum_probs=249.8
Q ss_pred CCCccccCCccccCCCCCCCCChHHHHHHHHHhccC--CCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCC
Q psy14428 162 HPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKN--LDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGIS 239 (583)
Q Consensus 162 ~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~--~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G 239 (583)
.++.|+|+.|.|+.. .++++.+.+++.+.+... ...+|++..|.++||+++++++.+.+|++ ++++|++ |+|
T Consensus 75 ~~~~i~l~~g~p~~~---~~p~~~v~~a~~~~l~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~-~~~~v~~--t~G 148 (448)
T 3aow_A 75 TSDIISLAGGLPNPK---TFPKEIIRDILVEIMEKYADKALQYGTTKGFTPLRETLMKWLGKRYGIS-QDNDIMI--TSG 148 (448)
T ss_dssp TSSSEECCCCCCCGG---GSCHHHHHHHHHHHHHHSHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCC-TTSEEEE--ESS
T ss_pred CCCcEeCCCCCCCch---hCCHHHHHHHHHHHHHhhhHHHhCCCCCCCcHHHHHHHHHHHHHhcCcC-ChhhEEE--eCc
Confidence 467899999998643 235678888887776542 23689999999999999999997667776 8899999 999
Q ss_pred chhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHc---CCCCcEEE-E
Q psy14428 240 GSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKA---MPERSILF-L 315 (583)
Q Consensus 240 ~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~---~~~~~~~i-~ 315 (583)
+++++.++ +..++.+||+|++++|+|..+...++..|++++.+|+ ++ .++|++.+++.+.. ...+++++ +
T Consensus 149 ~~~al~~~---~~~l~~~Gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~-~~--~g~d~~~L~~~l~~~~~~~~~~k~v~~ 222 (448)
T 3aow_A 149 SQQALDLI---GRVFLNPGDIVVVEAPTYLAALQAFNFYEPQYIQIPL-DD--EGMKVEILEEKLKELKSQGKKVKVVYT 222 (448)
T ss_dssp HHHHHHHH---HHHHCCTTCEEEEEESCCHHHHHHHHTTCCEEEEEEE-ET--TEECHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHH---HHHHcCCCCEEEEeCCChHHHHHHHHHcCCEEEEecc-CC--CCCCHHHHHHHHhhhhccCCCCeEEEE
Confidence 99999985 4456777999999999999999999999999999999 55 36899999998851 11356775 6
Q ss_pred eCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccce
Q psy14428 316 QTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVG 395 (583)
Q Consensus 316 i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG 395 (583)
+|+||||||.+++.+++++|+++|+++|++||+||+|.++.+++ ...+++..+ +..+++|+++||||.++ ||+|+|
T Consensus 223 ~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g--~~~~~~~~~-~~~~~vi~~~S~SK~~~-~GlriG 298 (448)
T 3aow_A 223 VPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSG--NPEKKIKAL-DNEGRVIYLGTFSKILA-PGFRIG 298 (448)
T ss_dssp CCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSS--CCCCCTGGG-CTTSCEEEEEESTTTTC-GGGCCE
T ss_pred CCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCC--CCCcCHHhc-CCCCCEEEEccchhhcc-ccccEE
Confidence 89999999999999999999999999999999999999999875 223344443 34578999999999999 999999
Q ss_pred EEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHH
Q psy14428 396 TFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIV 475 (583)
Q Consensus 396 ~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~ 475 (583)
|+++ + +++++++.........++|.++|.++..++++..
T Consensus 299 ~v~~--~-----~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~---------------------------------- 337 (448)
T 3aow_A 299 WMVG--D-----PGIIRKMEIAKQSTDLCTNVFGQVVAWRYVDGGY---------------------------------- 337 (448)
T ss_dssp EEEE--C-----HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTH----------------------------------
T ss_pred EEEe--C-----HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC----------------------------------
Confidence 9999 7 5899999887777677889999999988886521
Q ss_pred HHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCCh
Q psy14428 476 TEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSA 536 (583)
Q Consensus 476 ~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~ 536 (583)
|.++++++++++.++|+.+.+.|++.. |+.+.+..+++|+|.|..++.
T Consensus 338 ------------~~~~~~~~~~~~~~~~~~l~~~L~~~~-~~g~~~~~p~~g~~~~v~~~~ 385 (448)
T 3aow_A 338 ------------LEKHIPEIRKFYKPRRDAMLEALEEFM-PEGVKWTKPEGGMFIWVTLPD 385 (448)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHHHHHHC-CTTCEECCCSBSSEEEEECST
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCeEEeCCCccEEEEEEcCC
Confidence 234467777888899999999998753 433566678899999988764
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-38 Score=339.51 Aligned_cols=303 Identities=12% Similarity=0.087 Sum_probs=249.8
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
..++.|+|+.|.++.. +++.+.+++.+.+......+|++..|.++||+++++++.+.+|..+++++|++ |+|+
T Consensus 55 ~~~~~i~l~~g~~~~~-----~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~v~~--t~G~ 127 (447)
T 3b46_A 55 QGRELINLGQGFFSYS-----PPQFAIKEAQKALDIPMVNQYSPTRGRPSLINSLIKLYSPIYNTELKAENVTV--TTGA 127 (447)
T ss_dssp TTSCCEECCCCSCSSC-----CCHHHHHHHHHHTTSGGGGSCCCTTCCHHHHHHHHHHHTTTTTSCCCGGGEEE--ESHH
T ss_pred cCCCeEEccCCCCCCC-----CCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEE--eCCH
Confidence 4567899999988532 45788888888776422468999999999999999999988898899999999 9999
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCC-----------CCCCChhhHHHHHHcCCC
Q psy14428 241 SGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNK-----------TNGLDFAGMMEDIKAMPE 309 (583)
Q Consensus 241 ~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~-----------~~g~d~~~l~~~l~~~~~ 309 (583)
++|+.++ +..++.+||+|++++|+|..+...++..|++++.+|+ +++ ++++|++.+++.+ .+
T Consensus 128 ~~al~~~---~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~-~~~~~~~~~~~~~~~~~~d~~~l~~~l---~~ 200 (447)
T 3b46_A 128 NEGILSC---LMGLLNAGDEVIVFEPFFDQYIPNIELCGGKVVYVPI-NPPKELDQRNTRGEEWTIDFEQFEKAI---TS 200 (447)
T ss_dssp HHHHHHH---HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEEE-ECCGGGGTSCBCSTTSEECHHHHHTTC---CT
T ss_pred HHHHHHH---HHHHcCCCCEEEEeCCCchhHHHHHHHcCCEEEEEeC-CCccccccccccccCcccCHHHHHHhh---cc
Confidence 9999985 4445677999999999999999999999999999998 443 4678999888776 46
Q ss_pred CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHH-HHhcCcEEEEecCccccc
Q psy14428 310 RSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYF-AKEVGQLCLAQSFSKNMG 388 (583)
Q Consensus 310 ~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~-~~~~~~vi~i~S~SK~~~ 388 (583)
+++++++++||||||.+++.+++++|+++|+++|++||+||+|.++.+++ +..++..+ .+..++++++.||||.++
T Consensus 201 ~~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g---~~~~~~~~~~~~~~~~i~i~S~sK~~~ 277 (447)
T 3b46_A 201 KTKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTD---SFTRIATLSPEIGQLTLTVGSAGKSFA 277 (447)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSS---CCCCGGGSCHHHHTTEEEEEEHHHHTT
T ss_pred CCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCC---CCcCHHHcCCCCCCcEEEEecCchhcC
Confidence 78999999999999999999999999999999999999999999999875 12233332 233578999999999999
Q ss_pred ccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCc
Q psy14428 389 LYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPP 468 (583)
Q Consensus 389 l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p 468 (583)
++|+|+||+++ ++ +++++.+........++++.+.|.++..++++..
T Consensus 278 ~~G~riG~~~~--~~----~~l~~~l~~~~~~~~~~~~~~~~~a~~~aL~~~~--------------------------- 324 (447)
T 3b46_A 278 ATGWRIGWVLS--LN----AELLSYAAKAHTRICFASPSPLQEACANSINDAL--------------------------- 324 (447)
T ss_dssp CTTSCCEEEEC--SC----HHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHH---------------------------
T ss_pred CcchhhEEEEe--CC----HHHHHHHHHHHhhccCCCChHHHHHHHHHHhCCc---------------------------
Confidence 99999999998 54 4789999887777777889999998888775311
Q ss_pred cchhhHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCCh
Q psy14428 469 IHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSA 536 (583)
Q Consensus 469 ~~g~~i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~ 536 (583)
..++++++++++.++|+.+.+.|++.+ +.+..+++|+|.|..++.
T Consensus 325 -------------------~~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~g~~~~~~~~~ 369 (447)
T 3b46_A 325 -------------------KIGYFEKMRQEYINKFKIFTSIFDELG----LPYTAPEGTYFVLVDFSK 369 (447)
T ss_dssp -------------------HHTHHHHHHHHHHHHHHHHHHHHHHHT----CCEECCSBSSEEEEECTT
T ss_pred -------------------chHHHHHHHHHHHHHHHHHHHHHHHCC----CeecCCCeeEEEEEeccc
Confidence 112356677788899999999998874 445678899999987753
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-38 Score=335.30 Aligned_cols=324 Identities=14% Similarity=0.136 Sum_probs=249.7
Q ss_pred chhhHhhccccccCCC--CCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCC
Q psy14428 147 IKPLKQQLKGFNKDPH--PKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDF 224 (583)
Q Consensus 147 ~~~i~~l~~~~~~~~~--~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g 224 (583)
.++++.+...++...+ ++.|+|+.|.++. .+..++++.+.+++.+.+......+|.+..|.++||+++++++.+. +
T Consensus 36 ~~~i~~~~~~~~~~~~~~~~~i~l~~g~~~~-~g~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~-~ 113 (427)
T 3dyd_A 36 FNPIRAIVDNMKVKPNPNKTMISLSIGDPTV-FGNLPTDPEVTQAMKDALDSGKYNGYAPSIGFLSSREEIASYYHCP-E 113 (427)
T ss_dssp -----------CCCCCTTSCCEECCCSCTTT-TSSSCCCHHHHHHHHHHHHHCCSSSCCCTTCCHHHHHHHHHHHCBT-T
T ss_pred cchHHHHHHHHhhcccCCCCEEeCCCcCCCc-cCCCCCCHHHHHHHHHHHhcCcCCCCCCCCCcHHHHHHHHHHHhhc-C
Confidence 4567777665554444 3569999999753 2334477899999988876644568999999999999999999876 8
Q ss_pred CCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHH
Q psy14428 225 PAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDI 304 (583)
Q Consensus 225 ~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l 304 (583)
..+++++|++ |+|+++|+.++ +..+..+||+|++++|+|..+...++..|++++.+|+.+++++++|++.+++.+
T Consensus 114 ~~~~~~~v~~--t~g~t~al~~~---~~~l~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l 188 (427)
T 3dyd_A 114 APLEAKDVIL--TSGCSQAIDLC---LAVLANPGQNILVPRPGFSLYKTLAESMGIEVKLYNLLPEKSWEIDLKQLEYLI 188 (427)
T ss_dssp BCCCGGGEEE--ESSHHHHHHHH---HHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHSSC
T ss_pred CCCChHHEEE--ecCcHHHHHHH---HHHhcCCCCEEEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHh
Confidence 8889999999 99999999985 444567799999999999999999999999999999843345788999888776
Q ss_pred HcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCc
Q psy14428 305 KAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFS 384 (583)
Q Consensus 305 ~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~S 384 (583)
.++++++++++||||||.+++.+++++|+++|+++++++|+||+|.+|.+++. ...++..+ +...++|+++|||
T Consensus 189 ---~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~--~~~~~~~~-~~~~~vi~~~S~s 262 (427)
T 3dyd_A 189 ---DEKTACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDC--KYEPLATL-STDVPILSCGGLA 262 (427)
T ss_dssp ---CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSC--CCCCGGGG-CSSCCEEEEEEST
T ss_pred ---ccCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCC--cCccHHHh-CCCCcEEEEeecc
Confidence 45788999999999999999999999999999999999999999999998762 33334333 3346799999999
Q ss_pred ccccccCccceEEEEEcCCch--hHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhh
Q psy14428 385 KNMGLYGERVGTFSVLTPTSD--ETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRG 462 (583)
Q Consensus 385 K~~~l~GlRiG~lv~~~p~~~--~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~ 462 (583)
|+|+++|+|+||+++ +++. ..+++++.+...... .++++.+.|.++..++++..
T Consensus 263 K~~~~~G~riG~~~~--~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~a~~~~L~~~~--------------------- 318 (427)
T 3dyd_A 263 KRWLVPGWRLGWILI--HDRRDIFGNEIRDGLVKLSQR-ILGPCTIVQGALKSILCRTP--------------------- 318 (427)
T ss_dssp TTSSCGGGCCEEEEE--ECSTTSSHHHHHHHHHHHHHH-HCCSCHHHHHHHHHHHHHSC---------------------
T ss_pred ccCCCcCcceEEEEe--cCcchhhHHHHHHHHHHHHhc-cCCCCHHHHHHHHHHHHhcC---------------------
Confidence 999999999999999 5421 002577777766543 56788999998888875310
Q ss_pred ccCCCccchhhHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCCh
Q psy14428 463 FYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSA 536 (583)
Q Consensus 463 ~~~~~p~~g~~i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~ 536 (583)
. +.++++++++.++|+.+.+.|+++ || +....+++|+|.|..++.
T Consensus 319 -----------------------~---~~~~~~~~~~~~~~~~l~~~L~~~--~g-~~~~~p~~g~~~~~~l~~ 363 (427)
T 3dyd_A 319 -----------------------G---EFYHNTLSFLKSNADLCYGALAAI--PG-LRPVRPSGAMYLMVGIEM 363 (427)
T ss_dssp -----------------------H---HHHHHHHHHHHHHHHHHHHHHHHS--TT-EEEECCSBTTEEEEEECG
T ss_pred -----------------------H---HHHHHHHHHHHHHHHHHHHHHhcC--CC-ceecCCCeeEEEEEecCH
Confidence 0 114455667778888999999875 43 666778999999987663
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-37 Score=334.13 Aligned_cols=315 Identities=16% Similarity=0.151 Sum_probs=249.7
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhcc--C-CCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEec
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEK--N-LDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQG 237 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~--~-~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t 237 (583)
..++.++++.| +. .+|.+.+.++ .+.+.. + ....|.+..|.++||+++++++.+++|+.+++++|++ |
T Consensus 93 ~~p~~i~~~~~-~~-----~~p~~~~~~a-~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~--t 163 (500)
T 3tcm_A 93 DHPDLLQREEI-KT-----LFSADSISRA-KQILAMIPGRATGAYSHSQGIHGLRDAIASGIASRDGFPANADDIFL--T 163 (500)
T ss_dssp HSGGGGGCTTH-HH-----HSCHHHHHHH-HHHHTTSTTSCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGGGEEE--E
T ss_pred cCcccccCCCC-cc-----cCCHHHHHHH-HHHHHcCCCCcCCCcCCCcChHHHHHHHHHHHHhhcCCCCCcccEEE--c
Confidence 45667777765 21 2344555555 444443 2 4678999999999999999999988888899999999 9
Q ss_pred CCchhHHHHHHHHHHHhC-CCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcC---CCCcEE
Q psy14428 238 ISGSGSLRVGTAFLERFY-PGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAM---PERSIL 313 (583)
Q Consensus 238 ~G~~~al~l~~~~l~~~~-~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~---~~~~~~ 313 (583)
+|+++++.++ +..++ .+||+|++++|+|+.+...++..|++++.+++.++.++++|++.+++.++.. ..++++
T Consensus 164 ~G~~~al~~~---~~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ 240 (500)
T 3tcm_A 164 DGASPGVHLM---MQLLIRNEKDGILVPIPQYPLYSASIALHGGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRA 240 (500)
T ss_dssp SSSHHHHHHH---HHHHCCSTTEEEEEEESCCTHHHHHHHHTTCEEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEE
T ss_pred CCHHHHHHHH---HHHHcCCCCCEEEEeCCCcHhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHHhcCCCceE
Confidence 9999999985 44555 6799999999999999999999999999999943335799999999998642 236788
Q ss_pred EEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHH------hcCcEEEEecCcccc
Q psy14428 314 FLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAK------EVGQLCLAQSFSKNM 387 (583)
Q Consensus 314 i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~------~~~~vi~i~S~SK~~ 387 (583)
++++|||||||.++|.+++++|+++|++++++||+||+|.++.|++. ....++..+.. ...++|+++||||+|
T Consensus 241 ivl~~p~NPtG~~~s~~~l~~i~~la~~~~~~li~Deay~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~ 319 (500)
T 3tcm_A 241 LVVINPGNPTGQVLAEENQYDIVKFCKNEGLVLLADEVYQENIYVDN-KKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGY 319 (500)
T ss_dssp EEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTT-CCCCCHHHHHHHTTCSSSCCCEEEEEESSSTT
T ss_pred EEEECCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccccccCCC-CCCCcHHHHHHHhccccCCeEEEEEecCCccC
Confidence 88999999999999999999999999999999999999999998642 23345544322 224689999999999
Q ss_pred -cccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCC
Q psy14428 388 -GLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSN 466 (583)
Q Consensus 388 -~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~ 466 (583)
|++|+|+||+++.+.+ +++++.+.+... ...+++.++|.++..+++++..
T Consensus 320 ~g~~G~R~G~~~~~~~~----~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~------------------------ 370 (500)
T 3tcm_A 320 YGECGKRGGYFEITGFS----APVREQIYKIAS-VNLCSNITGQILASLVMNPPKA------------------------ 370 (500)
T ss_dssp TCCGGGCCEEEEEESCC----TTHHHHHHHHHH-TTCCCCHHHHHHHHHHHSCCCS------------------------
T ss_pred CCCCccceEEEEEeCCC----HHHHHHHHHHHh-cccCCCHHHHHHHHHHhcCccc------------------------
Confidence 8999999999984323 368888887653 5678899999999988875210
Q ss_pred CccchhhHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCC
Q psy14428 467 PPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGL 534 (583)
Q Consensus 467 ~p~~g~~i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l 534 (583)
.......|.++++++++++.++|+.+.+.|++. || +.+..+++|+|.|..+
T Consensus 371 --------------~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~--~g-~~~~~~~g~~~~~~~~ 421 (500)
T 3tcm_A 371 --------------SDESYASYKAEKDGILASLARRAKALEHAFNKL--EG-ITCNEAEGAMYVFPQI 421 (500)
T ss_dssp --------------SSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--TT-EECCCCCBTTEECCEE
T ss_pred --------------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CC-cEEecCCeEEEEeeee
Confidence 011234577778889999999999999999885 33 6778899999999543
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-38 Score=341.17 Aligned_cols=306 Identities=14% Similarity=0.176 Sum_probs=240.6
Q ss_pred CCccccCCccccCCCCCCCCChHHHHHH---------HHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCC-----
Q psy14428 163 PKKMNLGVGAYRGEDGKPYVLPSVKEAE---------RRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFK----- 228 (583)
Q Consensus 163 ~~~i~l~~g~~~~~~~~p~~~~~v~~a~---------~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~----- 228 (583)
++.|+|+.|.|+.+ .+|...+..++ ..... ...+|++..|+++||++|++++.+.+|+..+
T Consensus 31 ~~~i~l~~G~p~~~---~~p~~~~~~~~~~~~~~~~~~~~~~--~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~~ 105 (425)
T 2r2n_A 31 KSMISLAGGLPNPN---MFPFKTAVITVENGKTIQFGEEMMK--RALQYSPSAGIPELLSWLKQLQIKLHNPPTIHYPPS 105 (425)
T ss_dssp TTCEECCCCCCCGG---GCSEEEEEEEETTSCCEEECHHHHH--HHTSCCCTTCCHHHHHHHHHHHHHHHCCTTTTSCGG
T ss_pred CCeEEcCCcCCCch---hCCHHHHHHHHhhcccccccccchh--hhcCCCCCCCCHHHHHHHHHHHHHhcCCCCcccccc
Confidence 67899999999754 22221111110 00011 1357999999999999999999887787764
Q ss_pred --CCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHc
Q psy14428 229 --DNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKA 306 (583)
Q Consensus 229 --~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~ 306 (583)
+++|++ |+|+++++.++ +..++.+||+|++++|+|..+...++..|++++.+|+ ++ .++|++.+++.+++
T Consensus 106 ~~~~~i~~--t~G~~~al~~~---~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~-~~--~~~d~~~l~~~l~~ 177 (425)
T 2r2n_A 106 QGQMDLCV--TSGSQQGLCKV---FEMIINPGDNVLLDEPAYSGTLQSLHPLGCNIINVAS-DE--SGIVPDSLRDILSR 177 (425)
T ss_dssp GTCEEEEE--ESSHHHHHHHH---HHHHCCTTCEEEEESSCCHHHHHHHGGGTCEEEEECE-ET--TEECHHHHHHHHTT
T ss_pred CCcCcEEE--eCcHHHHHHHH---HHHhCCCCCEEEEeCCCcHHHHHHHHHcCCEEEEeCc-CC--CCCCHHHHHHHHHh
Confidence 379999 99999999985 4556777999999999999999999999999999998 54 47899999998863
Q ss_pred CC---------CCcEEE-EeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCc
Q psy14428 307 MP---------ERSILF-LQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQ 376 (583)
Q Consensus 307 ~~---------~~~~~i-~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~ 376 (583)
.. ++++++ ++|+||||||.+++.+++++|+++|+++|++||+||+|.++.|++. ...++..+ +..++
T Consensus 178 ~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~li~De~~~~~~~~g~--~~~~~~~~-~~~~~ 254 (425)
T 2r2n_A 178 WKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLIIEDDPYYFLQFNKF--RVPTFLSM-DVDGR 254 (425)
T ss_dssp SCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSS--CCCCTGGG-CTTSC
T ss_pred hhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCcccccCCCC--CCCCcccc-CCCCC
Confidence 21 345665 4589999999999999999999999999999999999999988752 33344443 34578
Q ss_pred EEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHH
Q psy14428 377 LCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQL 456 (583)
Q Consensus 377 vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l 456 (583)
+|+++||||+++ ||+|+||+++ + +++++++.........+++.+.|.++..++++..
T Consensus 255 ~i~~~s~SK~~~-~GlRiG~~~~--~-----~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~--------------- 311 (425)
T 2r2n_A 255 VIRADSFSKIIS-SGLRIGFLTG--P-----KPLIERVILHIQVSTLHPSTFNQLMISQLLHEWG--------------- 311 (425)
T ss_dssp EEEEEESTTTTC-STTCCEEEEE--E-----HHHHHHHHHHHHTTTCSSCHHHHHHHHHHHHHHH---------------
T ss_pred EEEEccchhhcc-CccceEEEec--C-----HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcc---------------
Confidence 999999999999 9999999999 6 5899999988877778999999999888775310
Q ss_pred HHHHhhccCCCccchhhHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCCh
Q psy14428 457 KILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSA 536 (583)
Q Consensus 457 ~~~~r~~~~~~p~~g~~i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~ 536 (583)
.+.|.++++++++++.++|+.+.+.|++.. ||...+..+++|+|.|..++.
T Consensus 312 ----------------------------~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~~p~~g~~~~~~~~~ 362 (425)
T 2r2n_A 312 ----------------------------EEGFMAHVDRVIDFYSNQKDAILAAADKWL-TGLAEWHVPAAGMFLWIKVKG 362 (425)
T ss_dssp ----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-SSSEEECCCSBSSEEEEEETT
T ss_pred ----------------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCeEEeCCCceEEEEEEeCC
Confidence 022445678888899999999999998753 332244568999999987754
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-38 Score=333.28 Aligned_cols=330 Identities=18% Similarity=0.287 Sum_probs=254.4
Q ss_pred cchhhHhhccccccC----CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhC
Q psy14428 146 DIKPLKQQLKGFNKD----PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYG 221 (583)
Q Consensus 146 ~~~~i~~l~~~~~~~----~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~ 221 (583)
.+++++.+...+++. .+.++|+|+.|+|.+..+.+.+++.+.+++.++... ...+|++..|.++||+++++++.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~g~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~-~~~~y~~~~g~~~lr~~ia~~~~~ 95 (418)
T 3rq1_A 17 LKDVIFVTAGQAQADAKENGRENVVNGTLGAIHDEEGNLVFLKTVKEEYLSLSDS-EHVGYAPIAGIPDFLCAAEKECFG 95 (418)
T ss_dssp CCCHHHHHHHHHHHHHHHHCGGGCEECCSSCCBCTTSCBCCCHHHHHHHHTCCHH-HHHSCCCTTCCHHHHHHHHHHHHG
T ss_pred CCchHHHHHHHHHhhhhhhcCCCeEECCCCcccCCCCCccccHHHHHHHHHhccc-ccCCCCCCCChHHHHHHHHHHHhc
Confidence 355666665443321 245789999999865555566788888887665432 246799999999999999999976
Q ss_pred CCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHH
Q psy14428 222 EDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMM 301 (583)
Q Consensus 222 ~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~ 301 (583)
.++.+ .+++|++ |+|+++++.++ +..++.+||+|++++|+|..|...++..|++++.+|+ +++++++|++.++
T Consensus 96 ~~~~~-~~~~i~~--t~g~~~al~~~---~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~-~~~~~~~d~~~l~ 168 (418)
T 3rq1_A 96 NFRPE-GHIRSIA--TAGGTGGIHHL---IHNYTEPGDEVLTADWYWGAYRVICSDTGRTLVTYSL-FDEHNNFNHEAFQ 168 (418)
T ss_dssp GGCCS-SEEEEEE--ESHHHHHHHHH---HHHHSCTTCEEEEESSCCTHHHHHHHHTTCEEEEECS-BCTTSSBCHHHHH
T ss_pred ccCcc-ccccEEE--CCchHHHHHHH---HHHhcCCCCEEEECCCCchhHHHHHHHcCCEEEEEee-eCCCCCcCHHHHH
Confidence 55433 2349999 99999999985 4456777999999999999999999999999999998 4445799999999
Q ss_pred HHHHcC--CCCcEEEEeCCC-CCCCCCCCCHHHHHHHHHHHH------hcCeEEEEeccCCCCCCCCCCCchHHHHH-HH
Q psy14428 302 EDIKAM--PERSILFLQTSS-HNPTGVDLSEDQWRQLAVVVK------QRHLYPFFDMAYLGLTSGDFDKDAFSLRY-FA 371 (583)
Q Consensus 302 ~~l~~~--~~~~~~i~i~~p-~NPTG~~~s~~~~~~l~~~a~------~~~i~iI~De~Y~~l~~~~~~~~~~~~~~-~~ 371 (583)
+.+.+. .+.++++++++| |||||.+++.+++++|+++|+ +++++||+||+|.+|.+++ ....++.. +.
T Consensus 169 ~~l~~~~~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~--~~~~~~~~~~~ 246 (418)
T 3rq1_A 169 NRVNELAAKQTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEK--DEVRAFFNKFS 246 (418)
T ss_dssp HHHHHHHHHCSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCH--HHHHGGGGGGT
T ss_pred HHHHHhhccCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCCh--HHHHHHHHHHH
Confidence 988532 123448899999 999999999999999999999 8999999999999999764 11222211 11
Q ss_pred HhcCc--EEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhcc----ccCCChHHHHHHHHHhCChhhhhh
Q psy14428 372 KEVGQ--LCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGF----YSNPPIHGARIVTEILSDPKLKAQ 445 (583)
Q Consensus 372 ~~~~~--vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~----~~~~s~~~q~~~~~~l~~~~~~~~ 445 (583)
+..++ +|+++||||++|++|+|+||+++.+++ +++++.+....... +++++.++|.++..++++..
T Consensus 247 ~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~---- 318 (418)
T 3rq1_A 247 HLPKEILTCVCYSLSKGFTMYGQRVGAMIGISDD----EEIADEFFEVNKSTSRATWSNICRPAMRTMANIVADPA---- 318 (418)
T ss_dssp TCCTTEEEEEEEESTTTTTCCSSCCEEEEEEESS----HHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHTCHH----
T ss_pred hcCCCceEEEEEeCCCCCcCcCCcceEEEEEeCC----HHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHhCCHH----
Confidence 12334 699999999999999999999973324 57888887764432 35688888888888887632
Q ss_pred hhhHHHHHHHHHHHHhhccCCCccchhhHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccc
Q psy14428 446 CDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQ 525 (583)
Q Consensus 446 ~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~ 525 (583)
+.+.|.++++++++++.++++.+.+.|++.+ +.+..++
T Consensus 319 --------------------------------------~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~ 356 (418)
T 3rq1_A 319 --------------------------------------KFKEYEAERNCYYQLIRDRADIFKQEAAQVG----LPMLPYR 356 (418)
T ss_dssp --------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----CCCCCCC
T ss_pred --------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCCCCC
Confidence 2245667778888999999999999998874 5567889
Q ss_pred ccceeecCCC
Q psy14428 526 KGMFCYTGLS 535 (583)
Q Consensus 526 ~g~f~~~~l~ 535 (583)
+|+|.|..+.
T Consensus 357 ~~~~~~~~~~ 366 (418)
T 3rq1_A 357 GGFFITIPTD 366 (418)
T ss_dssp SSSEEEEECT
T ss_pred ceEEEEcCCC
Confidence 9999998663
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-36 Score=331.44 Aligned_cols=284 Identities=15% Similarity=0.131 Sum_probs=227.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhCCC-CCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCC----EEEEcCCCChhhHH
Q psy14428 199 DHEYANIGGDAKFCKLAAQLAYGED-FPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVK----TVYFPTPTWNGHVR 273 (583)
Q Consensus 199 ~~~Y~~~~G~~~Lr~aia~~~~~~~-g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd----~Vlv~~P~y~~~~~ 273 (583)
...|++..|.++||++|++++.+.+ |+++++++|++ |+|+++++.++ +..++.+|| .|+++.|+|+.|..
T Consensus 122 ~~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~--t~G~~~ai~~~---~~~l~~~gd~~~d~Vlv~~p~y~~~~~ 196 (498)
T 3ihj_A 122 LGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYL--TTGASDGISTI---LKILVSGGGKSRTGVMIPIPQYPLYSA 196 (498)
T ss_dssp ------CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEE--ESSHHHHHHHH---HHHHCCCCGGGSEEEEEEESCCTHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCcccEEE--cCCHHHHHHHH---HHHHcCCCCCCCCEEEEeCCCchhHHH
Confidence 5689999999999999999998877 48899999999 99999999985 445666665 99999999999999
Q ss_pred HHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCC--CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEecc
Q psy14428 274 FCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPE--RSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMA 351 (583)
Q Consensus 274 ~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~--~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~ 351 (583)
.++..|++++.+++.++.++++|++.+++.+..... ++++++++|||||||.+++.+++++|+++|++++++||+||+
T Consensus 197 ~~~~~g~~~v~~~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i~l~np~NPTG~v~s~~~l~~i~~la~~~~~~li~De~ 276 (498)
T 3ihj_A 197 VISELDAIQVNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEV 276 (498)
T ss_dssp HHHHTTCEEEEEECBGGGTTBCCHHHHHHHHHHHTTTSEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECT
T ss_pred HHHHcCCEEEEeeccccccCCCCHHHHHHHHHhhhccCCCeEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCcEEEEEcC
Confidence 999999999999993333589999999999865322 578888899999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCchHHHHHHHH-------hcCcEEEEecCcccc-cccCccceEEEEEcCCchhHHHHHHHHHHHHhcccc
Q psy14428 352 YLGLTSGDFDKDAFSLRYFAK-------EVGQLCLAQSFSKNM-GLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYS 423 (583)
Q Consensus 352 Y~~l~~~~~~~~~~~~~~~~~-------~~~~vi~i~S~SK~~-~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~ 423 (583)
|.++.|++. ....++..+.. ...++|+++||||+| |++|+|+||+++++.+ +++++.+.+... ...
T Consensus 277 y~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~~~~~----~~l~~~l~~~~~-~~~ 350 (498)
T 3ihj_A 277 YQDNVYSPD-CRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLH----PEIKGQLVKLLS-VRL 350 (498)
T ss_dssp TTTCBCCTT-CCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEEESCC----HHHHHHHHHHHH-HSC
T ss_pred ccccccCCC-CCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccceEEEEEecCC----HHHHHHHHHHHh-ccC
Confidence 999999752 13445555432 234689999999999 8999999999942222 588998887765 667
Q ss_pred CCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHhcCChhHHHHHHHHHHHHHHHHHHHH
Q psy14428 424 NPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIR 503 (583)
Q Consensus 424 ~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r 503 (583)
+++.+.|.++..+++++. .| ......|.++++++++++.++|
T Consensus 351 ~~~~~~q~a~~~~l~~~~----------------------------~g----------~~~~~~~~~~~~~~~~~l~~~~ 392 (498)
T 3ihj_A 351 CPPVSGQAAMDIVVNPPV----------------------------AG----------EESFEQFSREKESVLGNLAKKA 392 (498)
T ss_dssp CCCHHHHHHHHHHTCCCC----------------------------TT----------STTHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCc----------------------------cC----------cccHHHHHHHHHHHHHHHHHHH
Confidence 889999999988887521 00 0112346666778888999999
Q ss_pred HHHHHHHHhcCCCCCcccccccccceeecCC
Q psy14428 504 EELKSKILDKGSKKNWDHITNQKGMFCYTGL 534 (583)
Q Consensus 504 ~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l 534 (583)
+.+.+.|++. || +.+..+++|+|.|..+
T Consensus 393 ~~l~~~L~~~--~g-~~~~~p~gg~~~~~~l 420 (498)
T 3ihj_A 393 KLTEDLFNQV--PG-IHCNPLQGAMYAFPRI 420 (498)
T ss_dssp HHHHHHHHTS--TT-EECCCCCBSSEECCEE
T ss_pred HHHHHHHhcC--CC-cEecCCCeEEEEEEec
Confidence 9999999885 43 7778899999999754
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-36 Score=319.74 Aligned_cols=300 Identities=15% Similarity=0.193 Sum_probs=245.2
Q ss_pred CCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCC-eEEEecCCch
Q psy14428 163 PKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNR-LAIVQGISGS 241 (583)
Q Consensus 163 ~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~-I~i~~t~G~~ 241 (583)
++.++|+.|.++. + +++.+.+++.+.+... ..+|++..|.++||+++++++.+.+|+.+++++ |++ |+|++
T Consensus 26 ~~~i~l~~~~~~~--~---~~~~v~~a~~~~~~~~-~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~--~~g~~ 97 (389)
T 1gd9_A 26 KDVISLGIGEPDF--D---TPQHIKEYAKEALDKG-LTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMV--LLGAN 97 (389)
T ss_dssp SSCEECCCCSCSS--C---CCHHHHHHHHHHHHTT-CCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEE--ESSTT
T ss_pred cCeEecCCCCCCC--C---CCHHHHHHHHHHHhCC-CCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEE--cCChH
Confidence 5789999998742 2 4578888888777553 457988899999999999999877777788999 999 99999
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccC-CCCCCChhhHHHHHHcCCCCcEEEEeCCCC
Q psy14428 242 GSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDN-KTNGLDFAGMMEDIKAMPERSILFLQTSSH 320 (583)
Q Consensus 242 ~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~-~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~ 320 (583)
+++.++ +..++.+||+|++++|+|..+...++..|++++.+|+ ++ +++.+|++.+++.+ .++++++++++||
T Consensus 98 ~a~~~~---~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~-~~~~~~~~d~~~l~~~l---~~~~~~v~~~~~~ 170 (389)
T 1gd9_A 98 QAFLMG---LSAFLKDGEEVLIPTPAFVSYAPAVILAGGKPVEVPT-YEEDEFRLNVDELKKYV---TDKTRALIINSPC 170 (389)
T ss_dssp HHHHHH---HTTTCCTTCEEEEEESCCTTHHHHHHHHTCEEEEEEC-CGGGTTCCCHHHHHHHC---CTTEEEEEEESSC
T ss_pred HHHHHH---HHHhCCCCCEEEEcCCCchhHHHHHHHCCCEEEEecc-CCccCCCCCHHHHHHhc---CcCceEEEEECCC
Confidence 999985 4456677999999999999999999999999999998 43 24678999998887 4568888999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEE
Q psy14428 321 NPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVL 400 (583)
Q Consensus 321 NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~ 400 (583)
||||.+++.+++++|+++|+++|++||+||+|.++.+++. ...++..+.+..++++++.||||.+|++|+|+||+++
T Consensus 171 nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~- 247 (389)
T 1gd9_A 171 NPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDA--RHYSIASLDGMFERTITVNGFSKTFAMTGWRLGFVAA- 247 (389)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTC--CCCCGGGSTTCGGGEEEEEESTTTTTCGGGCCEEEEC-
T ss_pred CCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCC--CCCCHhhccCCCCCEEEEecChhhcCCcccceEEEEE-
Confidence 9999999999999999999999999999999999988651 1223333222246899999999999999999999999
Q ss_pred cCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHhcC
Q psy14428 401 TPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEILS 480 (583)
Q Consensus 401 ~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~l~ 480 (583)
+ +++++++.........+++.+.|.++..++++..
T Consensus 248 -~-----~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~--------------------------------------- 282 (389)
T 1gd9_A 248 -P-----SWIIERMVKFQMYNATCPVTFIQYAAAKALKDER--------------------------------------- 282 (389)
T ss_dssp -C-----HHHHHHHHHHHTTTTCSCCHHHHHHHHHHHTCHH---------------------------------------
T ss_pred -C-----HHHHHHHHHHHhhhccCCCHHHHHHHHHHHhCCC---------------------------------------
Confidence 6 5899999887777777889999999888887521
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCCh
Q psy14428 481 DPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSA 536 (583)
Q Consensus 481 ~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~ 536 (583)
. .++++++++++.++++.+.+.|++.+ +....+++|+|.|..++.
T Consensus 283 ------~-~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~ 327 (389)
T 1gd9_A 283 ------S-WKAVEEMRKEYDRRRKLVWKRLNEMG----LPTVKPKGAFYIFPRIRD 327 (389)
T ss_dssp ------H-HHHHHHHHHHHHHHHHHHHHHHHHTT----CCCCCCCBTTEECCBCGG
T ss_pred ------c-chHHHHHHHHHHHHHHHHHHHHHHcC----CeecCCCeeeEEEEeccC
Confidence 0 01355667777888899999998863 455667889999987753
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-36 Score=315.24 Aligned_cols=299 Identities=13% Similarity=0.091 Sum_probs=245.1
Q ss_pred CCCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCC-CCCC-CeEEEec
Q psy14428 160 DPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPA-FKDN-RLAIVQG 237 (583)
Q Consensus 160 ~~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~-~~~~-~I~i~~t 237 (583)
..+++.|+|+.|.++.. +++.+.+++.+.... ..+|++..|.++||+++++++.+.+|+. ++++ +|++ |
T Consensus 27 ~~g~~~i~l~~~~~~~~-----~~~~v~~a~~~~~~~--~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~~i~~--t 97 (396)
T 3jtx_A 27 PEGMEAVPLHIGEPKHP-----TPKVITDALTASLHE--LEKYPLTAGLPELRQACANWLKRRYDGLTVDADNEILP--V 97 (396)
T ss_dssp CTTCCCEECSCCSCCSC-----CCHHHHHHHHHTGGG--GGSCCCTTCCHHHHHHHHHHHHHHTTTCCCCTTTSEEE--E
T ss_pred ccCCCeEEeCCcCCCCC-----CCHHHHHHHHHHhhh--ccCCCCCCCcHHHHHHHHHHHHHhcCCCCCCCCCeEEE--c
Confidence 45678999999997532 457888888877653 5789999999999999999998888887 8899 9999 9
Q ss_pred CCchhHHHHHHHHHHHhCCCC-----CEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcE
Q psy14428 238 ISGSGSLRVGTAFLERFYPGV-----KTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSI 312 (583)
Q Consensus 238 ~G~~~al~l~~~~l~~~~~~g-----d~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~ 312 (583)
+|+++++.++ +..++.+| |+|++++|+|..+...++..|++++.+|+ +++++.+|++.+++.+. ++++
T Consensus 98 ~g~~~al~~~---~~~~~~~g~~~~~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~-~~~g~~~d~~~l~~~~~---~~~~ 170 (396)
T 3jtx_A 98 LGSREALFSF---VQTVLNPVSDGIKPAIVSPNPFYQIYEGATLLGGGEIHFANC-PAPSFNPDWRSISEEVW---KRTK 170 (396)
T ss_dssp SSHHHHHHHH---HHHHCCC---CCCCEEEEEESCCHHHHHHHHHTTCEEEEEEC-CTTTCCCCGGGSCHHHH---HTEE
T ss_pred CCcHHHHHHH---HHHHhCCCCccCCCEEEEcCCCcHhHHHHHHHcCCEEEEeec-CCCCCccCHHHHHHhhc---cCcE
Confidence 9999999985 44556666 79999999999999999999999999999 66666789999998884 4788
Q ss_pred EEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHH---HHhcCcEEEEecCcccccc
Q psy14428 313 LFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYF---AKEVGQLCLAQSFSKNMGL 389 (583)
Q Consensus 313 ~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~---~~~~~~vi~i~S~SK~~~l 389 (583)
++++++||||||.+++.+++++|+++|++++++||+||+|.++.+++. .+...+... ....++++++.||||+|++
T Consensus 171 ~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~ 249 (396)
T 3jtx_A 171 LVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGN-KPLGCLQAAAQLGRSRQKLLMFTSLSKRSNV 249 (396)
T ss_dssp EEEEESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTC-CCCCHHHHHHHTTCCCTTEEEEEESTTTSSC
T ss_pred EEEEECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCC-CCchHHhhhhhcccccCcEEEEeccccccCC
Confidence 999999999999999999999999999999999999999999998752 122222221 1126789999999999999
Q ss_pred cCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCcc
Q psy14428 390 YGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPI 469 (583)
Q Consensus 390 ~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~ 469 (583)
+|+|+||+++ + +++++.+.........+++.+.|.++..++++.
T Consensus 250 ~G~r~G~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~----------------------------- 293 (396)
T 3jtx_A 250 PGLRSGFVAG--D-----AELLKNFLLYRTYHGSAMSIPVQRASIAAWDDE----------------------------- 293 (396)
T ss_dssp GGGCCEEEEE--C-----HHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHCC-----------------------------
T ss_pred cccceEEEEe--C-----HHHHHHHHHHHhhcccCCCHHHHHHHHHHhCCH-----------------------------
Confidence 9999999998 6 689999998877777889999999888877541
Q ss_pred chhhHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCCh
Q psy14428 470 HGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSA 536 (583)
Q Consensus 470 ~g~~i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~ 536 (583)
++++++++++.++++.+.+.|++. +.+..+++|+|.|..++.
T Consensus 294 --------------------~~~~~~~~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~~~~ 335 (396)
T 3jtx_A 294 --------------------QHVIDNRRLYQEKFERVIPILQQV-----FDVKLPDASFYIWLKVPD 335 (396)
T ss_dssp --------------------HHHHHHHHHHHHHHHHHHHHHTTT-----SCCCCCSSSSEEEEECTT
T ss_pred --------------------HHHHHHHHHHHHHHHHHHHHHHhc-----CCccCCCeeEEEEEECCC
Confidence 124455666778888888888764 224567889999988764
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-37 Score=327.08 Aligned_cols=308 Identities=13% Similarity=0.081 Sum_probs=251.5
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCC-CCeEEEecCC
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKD-NRLAIVQGIS 239 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~-~~I~i~~t~G 239 (583)
.+++.|+|+.|.++.. +++.+.+++.+.+......+|++..|.++||+++++++.+.+|+.+++ ++|++ |+|
T Consensus 21 ~~~~~i~l~~~~~~~~-----~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~i~~--~~g 93 (410)
T 3e2y_A 21 ADPSVVNLGQGFPDIS-----PPSYVKEELSKAAFIDNMNQYTRGFGHPALVKALSCLYGKIYQRQIDPNEEILV--AVG 93 (410)
T ss_dssp TSTTSEECSSCCCCSC-----CCHHHHHHHHHHHTCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEE--ESH
T ss_pred cCCCeEEecCCCCCCC-----CCHHHHHHHHHHHhCccccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCEEE--eCC
Confidence 4578899999997522 568899998888765445689999999999999999999888888888 89999 999
Q ss_pred chhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEeccc---------CCCCCCChhhHHHHHHcCCCC
Q psy14428 240 GSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFD---------NKTNGLDFAGMMEDIKAMPER 310 (583)
Q Consensus 240 ~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d---------~~~~g~d~~~l~~~l~~~~~~ 310 (583)
+++++.++ +..++.+||+|++++|+|..+...++..|.+++.+++.. +.++++|++.+++.+ .++
T Consensus 94 ~~~a~~~~---~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~---~~~ 167 (410)
T 3e2y_A 94 AYGSLFNS---IQGLVDPGDEVIIMVPFYDCYEPMVRMAGAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKF---SSK 167 (410)
T ss_dssp HHHHHHHH---HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEECCCCSSCCBGGGEECCHHHHHTTC---CTT
T ss_pred cHHHHHHH---HHHhcCCCCEEEEeCCCchhhHHHHHHcCCEEEEEeccccccccccccccCCcCCHHHHHhhc---CCC
Confidence 99999985 445677799999999999999999999999999999831 123557888887766 567
Q ss_pred cEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCccccccc
Q psy14428 311 SILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLY 390 (583)
Q Consensus 311 ~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~ 390 (583)
++++++++||||||.+++.+++++|+++|+++|++||+||+|.++.+++. ...++..+....+++++++||||.+|++
T Consensus 168 ~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~S~sK~~g~~ 245 (410)
T 3e2y_A 168 TKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGH--THVKIATLPGMWERTITIGSAGKTFSVT 245 (410)
T ss_dssp EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTC--CCCCGGGSTTCGGGEEEEEEHHHHSSCG
T ss_pred ceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCC--CCCCHHHcCCccCeEEEEecchhhcCCC
Confidence 89999999999999999999999999999999999999999999998762 3334444333457899999999999999
Q ss_pred CccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccc
Q psy14428 391 GERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIH 470 (583)
Q Consensus 391 GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~ 470 (583)
|+|+||+++ + +++++.+........++++.+.|.++..++++....
T Consensus 246 G~r~G~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~--------------------------- 291 (410)
T 3e2y_A 246 GWKLGWSIG--P-----AHLIKHLQTVQQNSFYTCATPLQAALAEAFWIDIKR--------------------------- 291 (410)
T ss_dssp GGCCEEEEC--C-----HHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTT---------------------------
T ss_pred CceEEEEEE--C-----HHHHHHHHHHHHhhccCCChHHHHHHHHHHHhhhcc---------------------------
Confidence 999999999 7 589999988887778889999999998887531000
Q ss_pred hhhHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCC
Q psy14428 471 GARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLS 535 (583)
Q Consensus 471 g~~i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~ 535 (583)
...+.++++++++++.++|+.+.+.|++.+ +.+..+++|+|.|..+.
T Consensus 292 --------------~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~ 338 (410)
T 3e2y_A 292 --------------MDDPECYFNSLPKELEVKRDRMVRLLNSVG----LKPIVPDGGYFIIADVS 338 (410)
T ss_dssp --------------TTSTTSHHHHHHHHHHHHHHHHHHHHHTTT----CEEEBCSBSSEEEEECG
T ss_pred --------------ccchHHHHHHHHHHHHHHHHHHHHHHHHCC----CeecCCCccEEEEEEch
Confidence 000112356677788899999999998864 55677899999987654
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-36 Score=325.35 Aligned_cols=309 Identities=16% Similarity=0.188 Sum_probs=243.5
Q ss_pred CCccccCCccc-cCCCCCCCCChHH--HHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCC---eEEEe
Q psy14428 163 PKKMNLGVGAY-RGEDGKPYVLPSV--KEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNR---LAIVQ 236 (583)
Q Consensus 163 ~~~i~l~~g~~-~~~~~~p~~~~~v--~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~---I~i~~ 236 (583)
++.+||+.|.+ +. +. ++.+ .+++.+.+......+|++..|.++||+++|+++.+.+ +.+++++ |++
T Consensus 47 ~~~i~l~~g~~~~~--~~---~~~~~~~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~-~~~~~~~~~~i~~-- 118 (430)
T 2x5f_A 47 STTYNATIGMATNK--DG---KMFASSLDAMFNDLTPDEIFPYAPPQGIEELRDLWQQKMLRDN-PELSIDNMSRPIV-- 118 (430)
T ss_dssp TCSEECCCSSCEET--TE---ECCCHHHHTTBSSCCGGGTSSCCCTTCCHHHHHHHHHHHHHHC-TTCCGGGBCCCEE--
T ss_pred CCcEEeeeeeccCC--CC---chhhHHHHHHHHhcCcccccccCCCCCCHHHHHHHHHHHhccC-cccCCCccceEEE--
Confidence 56899999998 53 22 2223 4443333222135689999999999999999997764 6778889 999
Q ss_pred cCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhh-cCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEE
Q psy14428 237 GISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTD-SRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFL 315 (583)
Q Consensus 237 t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~-~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~ 315 (583)
|+|+++|+.++ +..++.+||+|++++|+|..+...++. .|++++.+|+ +++++++|++.+++.+.....++++++
T Consensus 119 t~g~~~al~~~---~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~~~~-~~~~~~~d~~~l~~~l~~~~~~~~~v~ 194 (430)
T 2x5f_A 119 TNALTHGLSLV---GDLFVNQDDTILLPEHNWGNYKLVFNTRNGANLQTYPI-FDKDGHYTTDSLVEALQSYNKDKVIMI 194 (430)
T ss_dssp ESHHHHHHHHH---HHHHCCTTCEEEEESSCCTHHHHHHTTTTCCEEEEECC-BCTTSCBCSHHHHHHHHHCCSSEEEEE
T ss_pred cCCchHHHHHH---HHHHhCCCCEEEEcCCcCccHHHHHHHhcCCeEEEEec-cCccCCcCHHHHHHHHHhcCCCCEEEE
Confidence 99999999985 445667799999999999999999999 9999999998 543378999999999865444788999
Q ss_pred eCCCCCCCCCCCCHHHHHHHHHHHHh-----cCeEEEEeccCCCCCCCCCCCchHHHH-HHHHhcCc---EEEEecCccc
Q psy14428 316 QTSSHNPTGVDLSEDQWRQLAVVVKQ-----RHLYPFFDMAYLGLTSGDFDKDAFSLR-YFAKEVGQ---LCLAQSFSKN 386 (583)
Q Consensus 316 i~~p~NPTG~~~s~~~~~~l~~~a~~-----~~i~iI~De~Y~~l~~~~~~~~~~~~~-~~~~~~~~---vi~i~S~SK~ 386 (583)
+++||||||.+++.+++++|+++|++ +|++||+||+|.++.+++ ....++. .+.+..++ +|+++||||.
T Consensus 195 i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~s~sK~ 272 (430)
T 2x5f_A 195 LNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYED--VYTQSLFTALTNLHSNAILPIRLDGATKE 272 (430)
T ss_dssp ECSSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSS--SCCSCHHHHHHTTCCTTEEEEEEEEHHHH
T ss_pred EcCCCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCc--ccchHHHHHHhhccCCcceEEEEEecccC
Confidence 99999999999999999999999999 999999999999999875 2233444 54333578 9999999999
Q ss_pred ccccCccceEEEEEcCCchhHHHHHHHHHHHHhc----cccCCChHHHHHHHHHhC-ChhhhhhhhhHHHHHHHHHHHHh
Q psy14428 387 MGLYGERVGTFSVLTPTSDETERIMSQLKILIRG----FYSNPPIHGARIVTEILS-DPKLKAQCDETERIMSQLKILIR 461 (583)
Q Consensus 387 ~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~----~~~~~s~~~q~~~~~~l~-~~~~~~~~~~~~~~~~~l~~~~r 461 (583)
||++|+|+||+++.+++ +++++++...... ...++|.+.|.++..+++ +.
T Consensus 273 ~~~~G~riG~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--------------------- 327 (430)
T 2x5f_A 273 FFAWGFRVGFMTFGTSD----QTTKEVLEAKVKGLIRSNISSGPLPTQSAVKHVLKNNK--------------------- 327 (430)
T ss_dssp TTCGGGCCEEEEEBCCC----HHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSCH---------------------
T ss_pred CCCCCCCeEEEEEecCC----HHHHHHHHHHHhhhhhcccCCCChHHHHHHHHHHccCh---------------------
Confidence 99999999999983223 4788888876655 667889999999888886 52
Q ss_pred hccCCCccchhhHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCC
Q psy14428 462 GFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLS 535 (583)
Q Consensus 462 ~~~~~~p~~g~~i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~ 535 (583)
.|.++++++++++.++|+.+.+.|++...+-++....+++|+|.|..++
T Consensus 328 -------------------------~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~g~~~~~~~~ 376 (430)
T 2x5f_A 328 -------------------------QFDKEIEQNIQTLKERYEVTKEVVYADQYHSHWQAYDFNSGYFMAIKVH 376 (430)
T ss_dssp -------------------------HHHHHHHHHHHHHHHHHHHHHHHHTCGGGTTTEEECCCCBSSEEEEEES
T ss_pred -------------------------HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCceeeCCCceEEEEeCCC
Confidence 2444566677888899999999998431111256667889999998765
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-36 Score=322.28 Aligned_cols=298 Identities=13% Similarity=0.088 Sum_probs=240.8
Q ss_pred CCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCC-CCeEEEecCCc
Q psy14428 162 HPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKD-NRLAIVQGISG 240 (583)
Q Consensus 162 ~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~-~~I~i~~t~G~ 240 (583)
+.+.|||+.|.++. + +++.+.+++.+.+......+|++..|.++||+++++++.+.+|+++++ ++|++ |+|+
T Consensus 46 g~~~idl~~g~~~~--~---~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~--t~G~ 118 (404)
T 2o1b_A 46 PLPLINMAVGIPDG--P---TPQGIIDHFQKALTIPENQKYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCI--LYGT 118 (404)
T ss_dssp SSCCEECCCCSCSS--C---CCHHHHHHHHHHTTCHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEE--ESSH
T ss_pred CCCEEecCCcCCCC--C---CCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCcccEEE--cCCc
Confidence 34579999999842 2 457888888877644224579888899999999999998777787887 89999 9999
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCC
Q psy14428 241 SGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSH 320 (583)
Q Consensus 241 ~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~ 320 (583)
++++.++ +..+..+||+|++++|+|..+...++..|++++.+|+ +++++.+|++.+++.+. ++++++++++||
T Consensus 119 ~~al~~~---~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~-~~~~~~~d~~~l~~~l~---~~~~~v~l~~p~ 191 (404)
T 2o1b_A 119 KNGLVAV---PTCVINPGDYVLLPDPGYTDYLAGVLLADGKPVPLNL-EPPHYLPDWSKVDSQII---DKTKLIYLTYPN 191 (404)
T ss_dssp HHHHHHH---HHHHCCTTCEEEEEESCCSSHHHHHHHTTCEEEEEEC-CTTTCCCCGGGSCHHHH---HHEEEEEECSSC
T ss_pred HHHHHHH---HHHhcCCCCEEEEcCCCchhHHHHHHHCCCEEEEecc-CcccCcCCHHHHHHhhc---cCceEEEEcCCC
Confidence 9999985 4456677999999999999999999999999999998 54445688999988884 467888899999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEE
Q psy14428 321 NPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVL 400 (583)
Q Consensus 321 NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~ 400 (583)
||||.+++.+++++|+++|+++|++||+||+|.++.+++. +.++..+.+..++++++.||||.+|++|+|+||+++
T Consensus 192 nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~---~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~- 267 (404)
T 2o1b_A 192 NPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAK---NPSILASENGKDVAIEIYSLSKGYNMSGFRVGFAVG- 267 (404)
T ss_dssp TTTCCCCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSC---CCCGGGSTTHHHHEEEEEESTTTTTCGGGCCEEEEE-
T ss_pred CCCCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCC---CCChhhcCCCCCCEEEEEecchhccCchhheEeEec-
Confidence 9999999999999999999999999999999999988641 112222212235799999999999999999999998
Q ss_pred cCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHhcC
Q psy14428 401 TPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEILS 480 (583)
Q Consensus 401 ~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~l~ 480 (583)
+ +++++++.........+++.+.|.++..++++.
T Consensus 268 -~-----~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~---------------------------------------- 301 (404)
T 2o1b_A 268 -N-----KDMIQALKKYQTHTNAGMFGALQDAAIYALNHY---------------------------------------- 301 (404)
T ss_dssp -C-----HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC----------------------------------------
T ss_pred -C-----HHHHHHHHHHHhhccCCCCHHHHHHHHHHHhcC----------------------------------------
Confidence 6 589999988777667788999998887776431
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCC
Q psy14428 481 DPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLS 535 (583)
Q Consensus 481 ~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~ 535 (583)
.++++++++++.++++.+.+.|++.+ +....+++|+|.|..++
T Consensus 302 --------~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~g~~~~~~~~ 344 (404)
T 2o1b_A 302 --------DDFLEEQSNVFKTRRDRFEAMLAKAD----LPFVHAKGGIYVWLETP 344 (404)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHTT----CCEECCCBSSEEEEECC
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHhcC----CeecCCCcceEEEEeCC
Confidence 01245566677888888999998863 45566788999998775
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-36 Score=315.09 Aligned_cols=307 Identities=13% Similarity=0.054 Sum_probs=236.2
Q ss_pred ccccchhhHhhcccccc-CCCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhC
Q psy14428 143 MMEDIKPLKQQLKGFNK-DPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYG 221 (583)
Q Consensus 143 m~~~~~~i~~l~~~~~~-~~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~ 221 (583)
|.-+++++..+...++. ..+.+.|||+.|.++.. +++.+.+++.+... ...+|++..|.++||+++++++.+
T Consensus 2 m~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~-----~~~~v~~a~~~~~~--~~~~y~~~~g~~~lr~~la~~l~~ 74 (376)
T 3ezs_A 2 MTFEPYPFERLRALLKEITPKKRGLDLGIGEPQFE-----TPKFIQDALKNHTH--SLNIYPKSAFEESLRAAQRGFFKR 74 (376)
T ss_dssp CCCCCCHHHHHHHHHTTCCCSSCCCBCSSCCCCSC-----CCHHHHHHHHTTGG--GGGSCCCTTCCHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHhhhccCCEEEeCCCCCCCC-----CCHHHHHHHHHhhh--hcCCCCCCCCCHHHHHHHHHHHHH
Confidence 43344455554433321 12238899999997522 45788888877663 256799999999999999999988
Q ss_pred CCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCC--CCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhh
Q psy14428 222 EDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPG--VKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAG 299 (583)
Q Consensus 222 ~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~--gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~ 299 (583)
.+|+.+++++|++ |+|+++++.++ +..+..+ ||+|++++|+|..+...++..|++++.+|+ +++ .++++ .
T Consensus 75 ~~g~~~~~~~i~~--t~g~~~al~~~---~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~-~~~-~~~~~-~ 146 (376)
T 3ezs_A 75 RFKIELKENELIS--TLGSREVLFNF---PSFVLFDYQNPTIAYPNPFYQIYEGAAKFIKAKSLLMPL-TKE-NDFTP-S 146 (376)
T ss_dssp HHSCCCCGGGEEE--ESSSHHHHHHH---HHHHTTTCSSCEEEEEESCCTHHHHHHHHTTCEEEEEEC-CGG-GTSCC-C
T ss_pred HhCCCCCHHHEEE--CcCcHHHHHHH---HHHHcCCCCCCEEEEecCCcHhHHHHHHHcCCEEEEccc-CCC-CCcch-h
Confidence 7788889999999 99999999985 4556788 999999999999999999999999999998 433 34555 5
Q ss_pred HHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHH-----hc
Q psy14428 300 MMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAK-----EV 374 (583)
Q Consensus 300 l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~-----~~ 374 (583)
+++.+. ++++++++++||||||.+++.+++++|+++|+++|++||+||+|.++.+++ ...++....+ ..
T Consensus 147 l~~~~~---~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~---~~~~~~~~~~~~~~~~~ 220 (376)
T 3ezs_A 147 LNEKEL---QEVDLVILNSPNNPTGRTLSLEELISWVKLALKHDFILINDECYSEIYENT---PPPSLLEACMLAGNEAF 220 (376)
T ss_dssp CCHHHH---HHCSEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSS---CCCCHHHHHHHTTCTTC
T ss_pred HHhhhc---cCCCEEEEcCCCCCcCCCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCC---CCCCHHHcccccccccc
Confidence 555553 356788889999999999999999999999999999999999999999875 2223333333 56
Q ss_pred CcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChh-hhhhhhhHHHHH
Q psy14428 375 GQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPK-LKAQCDETERIM 453 (583)
Q Consensus 375 ~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~-~~~~~~~~~~~~ 453 (583)
+++++++||||.+|++|+|+||+++ + +++++.+.........+.+.+.|.++..++++.. +++..+..++..
T Consensus 221 ~~~i~~~s~sK~~g~~G~r~G~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 293 (376)
T 3ezs_A 221 KNVLVIHSLSKRSSAPGLRSGFIAG--D-----SRLLEKYKAFRAYLGYTSANAIQKASEAAWLDDRHAEFFRNIYANNL 293 (376)
T ss_dssp TTEEEEEESTTTTTCGGGCCEEEEE--C-----HHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHCSHHHHHHHHHHHHHH
T ss_pred CcEEEEecchhccCCccceeEEEee--C-----HHHHHHHHHHHhhhcCCCChHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 8999999999999999999999998 6 6899999988877788899999999999887633 222222222333
Q ss_pred HHHHHHHhhccCCCccchhhHHHHhc
Q psy14428 454 SQLKILIRGFYSNPPIHGARIVTEIL 479 (583)
Q Consensus 454 ~~l~~~~r~~~~~~p~~g~~i~~~~l 479 (583)
+.+.+.++ .+. .|..|.|+|..+.
T Consensus 294 ~~l~~~l~-~~~-~~~~~~~~~~~~~ 317 (376)
T 3ezs_A 294 KLARKIFK-NTL-IYPYSFYVYLPVQ 317 (376)
T ss_dssp HHHHHHST-TCC-CCSBSSEEEEECS
T ss_pred HHHHHHhc-CCC-CCCcceEEEEECC
Confidence 33333333 344 6778888887765
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=324.53 Aligned_cols=307 Identities=16% Similarity=0.125 Sum_probs=251.5
Q ss_pred CCCccccCCccccCCCCCCCCChHHHHHHHHHhccCC-CCCCCCCCCCHHHHHHHHHHHhCCCCCCCCC-CCeEEEecCC
Q psy14428 162 HPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNL-DHEYANIGGDAKFCKLAAQLAYGEDFPAFKD-NRLAIVQGIS 239 (583)
Q Consensus 162 ~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~-~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~-~~I~i~~t~G 239 (583)
.++.|+|+.|.++. .+++.+.+++.+.+.... ..+|++..|.++||+++++++.+.+|+.+++ ++|++ |+|
T Consensus 27 ~~~~i~l~~g~~~~-----~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~i~~--~~g 99 (422)
T 3fvs_A 27 EHDVVNLGQGFPDF-----PPPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLV--TVG 99 (422)
T ss_dssp TSCCEECCCSSCSS-----CCCHHHHHHHHHHHHSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEE--ESH
T ss_pred cCCceEeCCCCCCC-----CCCHHHHHHHHHHHhCCCccCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCcEEE--ECC
Confidence 45889999999753 256888898888776532 4689999999999999999999888888888 79999 999
Q ss_pred chhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccC-----------CCCCCChhhHHHHHHcCC
Q psy14428 240 GSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDN-----------KTNGLDFAGMMEDIKAMP 308 (583)
Q Consensus 240 ~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~-----------~~~g~d~~~l~~~l~~~~ 308 (583)
+++++.++ +..++.+||+|++++|+|..+...++..|++++.+|+ ++ .++.+|++.+++.+ .
T Consensus 100 ~~~a~~~~---~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~-~~~~~~~G~~~~~~~~~~d~~~l~~~~---~ 172 (422)
T 3fvs_A 100 GYGALFTA---FQALVDEGDEVIIIEPFFDCYEPMTMMAGGRPVFVSL-KPGPIQNGELGSSSNWQLDPMELAGKF---T 172 (422)
T ss_dssp HHHHHHHH---HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEEC-BCCCCCSSSCCBGGGSBCCHHHHHTTC---C
T ss_pred hHHHHHHH---HHHHcCCCCEEEEcCCCchhhHHHHHHcCCEEEEEec-ccccccccccccccCCCCCHHHHHhhc---C
Confidence 99999985 4455677999999999999999999999999999998 43 23457888887766 5
Q ss_pred CCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCccccc
Q psy14428 309 ERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMG 388 (583)
Q Consensus 309 ~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~ 388 (583)
++++++++++||||||.+++.+++++|+++|+++|++||+||+|.++.+++. ...++..+....+++++++||||.+|
T Consensus 173 ~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~S~sK~~g 250 (422)
T 3fvs_A 173 SRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGH--QHISIASLPGMWERTLTIGSAGKTFS 250 (422)
T ss_dssp TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTC--CCCCGGGSTTTGGGEEEEEEHHHHHT
T ss_pred CCceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCC--CCCChhhcccccCcEEEEecchhccC
Confidence 6789999999999999999999999999999999999999999999998762 33344443334578999999999999
Q ss_pred ccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCc
Q psy14428 389 LYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPP 468 (583)
Q Consensus 389 l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p 468 (583)
++|+|+||+++ + +++++.+.........+++.+.|.++..++++.....
T Consensus 251 ~~G~r~G~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~------------------------ 299 (422)
T 3fvs_A 251 ATGWKVGWVLG--P-----DHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLF------------------------ 299 (422)
T ss_dssp CGGGCCEEEEC--C-----HHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHTT------------------------
T ss_pred CccceEEEEEe--C-----HHHHHHHHHHHhhccCCCCcHHHHHHHHHHhhccccc------------------------
Confidence 99999999999 7 5899999888777788889999999888875311000
Q ss_pred cchhhHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCCh
Q psy14428 469 IHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSA 536 (583)
Q Consensus 469 ~~g~~i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~ 536 (583)
..+.++++++++++.++|+.+.+.|++.+ +.+..+++|+|.|..++.
T Consensus 300 -----------------~~~~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~ 346 (422)
T 3fvs_A 300 -----------------RQPSSYFVQFPQAMQRCRDHMIRSLQSVG----LKPIIPQGSYFLITDISD 346 (422)
T ss_dssp -----------------TCTTCHHHHHHHHHHHHHHHHHHHHHTTT----CEEEBCSBSSEEEEECHH
T ss_pred -----------------cchHHHHHHHHHHHHHHHHHHHHHHHHcC----CeecCCCeeeEEEEechh
Confidence 00112356677788899999999998864 556778999999987754
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-36 Score=323.00 Aligned_cols=307 Identities=15% Similarity=0.206 Sum_probs=246.0
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccC--CCCCCCCCCCCHHHHHHHHHHHhCCCCCC-CCCCCeEEEec
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKN--LDHEYANIGGDAKFCKLAAQLAYGEDFPA-FKDNRLAIVQG 237 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~--~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~-~~~~~I~i~~t 237 (583)
..++.|||+.|.++.. .++++.+.+++.+.++.. ...+|++..|.++||+++|+++.+.+|++ +++++|++ |
T Consensus 41 ~~~~~idl~~g~~~~~---~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~v~~--t 115 (425)
T 1vp4_A 41 ADKDAISFGGGVPDPE---TFPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIF--T 115 (425)
T ss_dssp TSTTCEECCCCSCCGG---GSCHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEE--E
T ss_pred cCCCceeCCCCCCCcc---cCCHHHHHHHHHHHHhhcchhhcCCCCCCCCHHHHHHHHHHHHhccCCCCCCcccEEE--e
Confidence 3567899999987532 224578888887776542 13679999999999999999997655776 78899999 9
Q ss_pred CCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcC-----CCCcE
Q psy14428 238 ISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAM-----PERSI 312 (583)
Q Consensus 238 ~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~-----~~~~~ 312 (583)
+|+++++.++ +..+..+||+|++++|+|..+...++..|++++.+|+ +++ ++|++.+++.++.. ..+++
T Consensus 116 ~G~~~al~~~---~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~-~~~--~~d~~~l~~~l~~~~~~~~~~~~~ 189 (425)
T 1vp4_A 116 VGSQQALDLI---GKLFLDDESYCVLDDPAYLGAINAFRQYLANFVVVPL-EDD--GMDLNVLERKLSEFDKNGKIKQVK 189 (425)
T ss_dssp EHHHHHHHHH---HHHHCCTTCEEEEEESCCHHHHHHHHTTTCEEEEEEE-ETT--EECHHHHHHHHHHHHHTTCGGGEE
T ss_pred ccHHHHHHHH---HHHhCCCCCEEEEeCCCcHHHHHHHHHcCCEEEEecc-CCC--CCCHHHHHHHHHhhhhcccCCCce
Confidence 9999999985 4456677999999999999999999999999999998 553 68999999888541 12567
Q ss_pred EE-EeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccC
Q psy14428 313 LF-LQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYG 391 (583)
Q Consensus 313 ~i-~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~G 391 (583)
++ ++++||||||.+++.+++++|+++|+++|++||+||+|.++.+++ ....++..+ +..+++|+++||||.++ +|
T Consensus 190 ~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g--~~~~~~~~~-~~~~~~i~~~s~sK~~~-~G 265 (425)
T 1vp4_A 190 FIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEG--ETVDPIFKI-GGPERVVLLNTFSKVLA-PG 265 (425)
T ss_dssp EEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSS--CCCCCHHHH-HCTTTEEEEEESTTTTC-GG
T ss_pred EEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccCCC--CCCcCHHHh-CCCCCEEEEeccccccc-cc
Confidence 76 689999999999999999999999999999999999999998865 233455554 44578999999999999 99
Q ss_pred ccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccch
Q psy14428 392 ERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHG 471 (583)
Q Consensus 392 lRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g 471 (583)
+|+||+++ + +++++.+.........++|.++|.++..++++..
T Consensus 266 ~r~G~~~~--~-----~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~------------------------------ 308 (425)
T 1vp4_A 266 LRIGMVAG--S-----KEFIRKIVQAKQSADLCSPAITHRLAARYLERYD------------------------------ 308 (425)
T ss_dssp GCEEEEEC--C-----HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSC------------------------------
T ss_pred cceEEEee--C-----HHHHHHHHHHhhhhcCCCCHHHHHHHHHHHhcCC------------------------------
Confidence 99999999 6 5789988887766667789999998888775421
Q ss_pred hhHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CcccccccccceeecCCCh
Q psy14428 472 ARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKK--NWDHITNQKGMFCYTGLSA 536 (583)
Q Consensus 472 ~~i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg--~~~~~~~~~g~f~~~~l~~ 536 (583)
+.++++++++++.++++.+.+.|++.. |+ ++....+++|+|.|..++.
T Consensus 309 ----------------~~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~g~~~~~~~~g~~~~~~~~~ 358 (425)
T 1vp4_A 309 ----------------LLEQLKPTIELYRRKRTVMLNALEEYF-SDIPGVKWVKSEGGLFIWLTLPE 358 (425)
T ss_dssp ----------------HHHHTHHHHHHHHHHHHHHHHHHHHHS-TTSTTCEECCCSBSSEEEEECCT
T ss_pred ----------------HHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCceEEecCCccEEEEEEcCC
Confidence 123355667777888888999888753 32 3556668889999987753
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-36 Score=315.76 Aligned_cols=298 Identities=13% Similarity=0.121 Sum_probs=243.4
Q ss_pred CCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCC-CeEEEecCCch
Q psy14428 163 PKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDN-RLAIVQGISGS 241 (583)
Q Consensus 163 ~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~-~I~i~~t~G~~ 241 (583)
++.|+|+.|.++. + +++.+.+++.+..... ..+|++..|.++||+++++++.+.+|..++++ +|++ |+|++
T Consensus 30 ~~~i~l~~~~~~~--~---~~~~v~~a~~~~~~~~-~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~--~~g~~ 101 (386)
T 1u08_A 30 HQAINLSQGFPDF--D---GPRYLQERLAHHVAQG-ANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITV--TAGAT 101 (386)
T ss_dssp TTCEECCCSSCSS--C---CCHHHHHHHHHHHHTT-CCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEE--ESSHH
T ss_pred CCeEEecCCCCCC--C---CCHHHHHHHHHHHHhh-ccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEE--cCChH
Confidence 4679999998742 2 4578888888777543 46798889999999999999987777778898 9999 99999
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCC
Q psy14428 242 GSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHN 321 (583)
Q Consensus 242 ~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~N 321 (583)
+++.++ +..+..+||+|++++|+|..+...++..|++++.+|+ +++++++|++.+++.+ .++++++++++|||
T Consensus 102 ~a~~~~---~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~-~~~~~~~d~~~l~~~l---~~~~~~v~l~~p~n 174 (386)
T 1u08_A 102 EALYAA---ITALVRNGDEVICFDPSYDSYAPAIALSGGIVKRMAL-QPPHFRVDWQEFAALL---SERTRLVILNTPHN 174 (386)
T ss_dssp HHHHHH---HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEEC-CTTTCCCCHHHHHHHC---CTTEEEEEEESSCT
T ss_pred HHHHHH---HHHhCCCCCEEEEeCCCchhHHHHHHHcCCEEEEeec-CcccCcCCHHHHHHhh---cccCEEEEEeCCCC
Confidence 999985 4445677999999999999999999999999999998 5545789999998887 46788999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEc
Q psy14428 322 PTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLT 401 (583)
Q Consensus 322 PTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~ 401 (583)
|||.+++.+++++|+++|+++|++||+||+|.++.+++. ...++..+....++++++.||||.+|++|+|+||+++
T Consensus 175 ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~-- 250 (386)
T 1u08_A 175 PSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQ--GHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYCVA-- 250 (386)
T ss_dssp TTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSS--CCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCEEEEC--
T ss_pred CCCccCCHHHHHHHHHHHHHcCcEEEEEccccccccCCC--CCcChhcccCccCcEEEEecchhhcCCcccceEEEEc--
Confidence 999999999999999999999999999999999988652 2223333222357899999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHhcCC
Q psy14428 402 PTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEILSD 481 (583)
Q Consensus 402 p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~l~~ 481 (583)
+ +++++++.........+++.+.|.++..++++.
T Consensus 251 ~-----~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~----------------------------------------- 284 (386)
T 1u08_A 251 P-----APISAEIRKVHQYLTFSVNTPAQLALADMLRAE----------------------------------------- 284 (386)
T ss_dssp C-----HHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHC-----------------------------------------
T ss_pred C-----HHHHHHHHHHHHhhccCCChHHHHHHHHHHhCC-----------------------------------------
Confidence 7 578898888776666778888888887776431
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCCh
Q psy14428 482 PKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSA 536 (583)
Q Consensus 482 ~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~ 536 (583)
.++++++++++.++++.+.+.|++.+ +.+..+++|+|.|..++.
T Consensus 285 -------~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~g~~~~~~~~~ 328 (386)
T 1u08_A 285 -------PEHYLALPDFYRQKRDILVNALNESR----LEILPCEGTYFLLVDYSA 328 (386)
T ss_dssp -------THHHHTHHHHHHHHHHHHHHHTTSSS----CEECCCCBSSEEEEECTT
T ss_pred -------cHHHHHHHHHHHHHHHHHHHHHHHCC----CeecCCCceEEEEEecCC
Confidence 01244566677888899999888753 555667889999987754
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-36 Score=317.63 Aligned_cols=298 Identities=15% Similarity=0.085 Sum_probs=240.5
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCC-CeEEEecCC
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDN-RLAIVQGIS 239 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~-~I~i~~t~G 239 (583)
.+.+.|||+.|.++ .+ +++.+.+++.+.+......+|++..|..+||+++++++.+.+|++++++ +|++ |+|
T Consensus 23 ~g~~~idl~~~~~~--~~---~~~~v~~a~~~~~~~~~~~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~--~~g 95 (376)
T 2dou_A 23 RGVGLIDLSIGSTD--LP---PPEAPLKALAEALNDPTTYGYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALA--LIG 95 (376)
T ss_dssp TTCCCEECSSCCCC--CC---CCHHHHHHHHHHTTCGGGSSCCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEE--ESS
T ss_pred cCCCEEeccCCCCC--CC---CCHHHHHHHHHHHhCCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEE--cCC
Confidence 45678999999874 22 4578888888877543356788878999999999999987777877887 9999 999
Q ss_pred chhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCC
Q psy14428 240 GSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSS 319 (583)
Q Consensus 240 ~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p 319 (583)
+++++.++ +..+..+||+|++++|+|..+...++..|++++.+|+ + +++.+|++.+++.+. ++++++++++|
T Consensus 96 ~~~a~~~~---~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~-~-~~~~~d~~~l~~~l~---~~~~~v~l~~p 167 (376)
T 2dou_A 96 SQEGLAHL---LLALTEPEDLLLLPEVAYPSYFGAARVASLRTFLIPL-R-EDGLADLKAVPEGVW---REAKVLLLNYP 167 (376)
T ss_dssp HHHHHHHH---HHHHCCTTCEEEEESSCCHHHHHHHHHTTCEEEEECB-C-TTSSBCGGGSCHHHH---HHEEEEEECSS
T ss_pred cHHHHHHH---HHHhcCCCCEEEECCCCcHhHHHHHHHcCCEEEEeeC-C-CCCCCCHHHHHHhhc---cCceEEEECCC
Confidence 99999985 4456677999999999999999999999999999998 3 345678999988883 46788999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEE
Q psy14428 320 HNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSV 399 (583)
Q Consensus 320 ~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~ 399 (583)
|||||.+++.+++++|+++|+++|++||+||+|.++.+++. ..++..+.+..+++++++||||.+|++|+|+||+++
T Consensus 168 ~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~---~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~ 244 (376)
T 2dou_A 168 NNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGE---APSPLALPGAKERVVELFSLSKSYNLAGFRLGFALG 244 (376)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSC---CCCGGGSTTGGGTEEEEEEHHHHHTCGGGCCEEEEE
T ss_pred CCCcCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCC---CCChhhcCCCCCcEEEEecchhhcCChhheeEEEec
Confidence 99999999999999999999999999999999999987641 112222223356899999999999999999999998
Q ss_pred EcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHhc
Q psy14428 400 LTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEIL 479 (583)
Q Consensus 400 ~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~l 479 (583)
+ +++++++.........+.+.+.|.++..++++. +
T Consensus 245 --~-----~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~--~------------------------------------ 279 (376)
T 2dou_A 245 --S-----EEALARLERVKGVIDFNQYAGVLRMGVEALKTP--K------------------------------------ 279 (376)
T ss_dssp --C-----HHHHHHHHHHHHHHCCCSCHHHHHHHHHHHTSC--H------------------------------------
T ss_pred --C-----HHHHHHHHHHHHhcccCCCHHHHHHHHHHHhCc--H------------------------------------
Confidence 6 589999988777666778999999888888651 0
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCCh
Q psy14428 480 SDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSA 536 (583)
Q Consensus 480 ~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~ 536 (583)
++++++++++.++++.+.+.|++. +....+++|+|.|..++.
T Consensus 280 ----------~~~~~~~~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~~~~ 321 (376)
T 2dou_A 280 ----------EVVRGYARVYRERALGMAEALKGV-----LSLLPPRATMYLWGRLPE 321 (376)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHHHTTT-----SEECCCCBSSEEEEECCT
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHh-----cCccCCCeeEEEEEECCC
Confidence 124455666778888888888764 344567789999987753
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-36 Score=317.22 Aligned_cols=293 Identities=16% Similarity=0.117 Sum_probs=233.2
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
.+++.|||+.|.++.. +++.+.+++.+.+.+. ..+|++..|.++||+++++++.+.+|+.+++++|++ |+|+
T Consensus 29 ~g~~~i~l~~g~~~~~-----~~~~v~~a~~~~~~~~-~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~v~~--t~g~ 100 (391)
T 3h14_A 29 AGRRIIHMEVGQPGTG-----APRGAVEALAKSLETD-ALGYTVALGLPALRQRIARLYGEWYGVDLDPGRVVI--TPGS 100 (391)
T ss_dssp TTCCCEECCCSSCSSC-----SCHHHHHHHHHHHC-----------CCHHHHHHHHHHHHHHHCCCCCGGGEEE--ESSH
T ss_pred cCCCeEEccCCCCCCC-----CCHHHHHHHHHHHhcC-CCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEE--ecCh
Confidence 4678899999997532 4578888888877653 468999999999999999999988888899999999 9999
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCC-CCCCChhhHHHHHHcCCCCcEEEEeCCC
Q psy14428 241 SGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNK-TNGLDFAGMMEDIKAMPERSILFLQTSS 319 (583)
Q Consensus 241 ~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~-~~g~d~~~l~~~l~~~~~~~~~i~i~~p 319 (583)
++|+.++ +..++.+||+|++++|+|..+...++..|++++.+|+ +++ ++.+|++.+++. +++++++++|
T Consensus 101 ~~al~~~---~~~l~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~-~~~~~~~~d~~~l~~~------~~~~v~i~~p 170 (391)
T 3h14_A 101 SGGFLLA---FTALFDSGDRVGIGAPGYPSYRQILRALGLVPVDLPT-APENRLQPVPADFAGL------DLAGLMVASP 170 (391)
T ss_dssp HHHHHHH---HHHHCCTTCEEEEEESCCHHHHHHHHHTTCEEEEEEC-CGGGTTSCCHHHHTTS------CCSEEEEESS
T ss_pred HHHHHHH---HHHhcCCCCEEEEcCCCCccHHHHHHHcCCEEEEeec-CcccCCCCCHHHHHhc------CCeEEEECCC
Confidence 9999985 4556677999999999999999999999999999998 433 356788777542 6788889999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEE
Q psy14428 320 HNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSV 399 (583)
Q Consensus 320 ~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~ 399 (583)
|||||.+++.+++++|+++|+++|++||+||+|.++.+++. ..+.. +..+++++++||||.+|++|+|+||+++
T Consensus 171 ~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~---~~~~~---~~~~~~i~~~s~sK~~g~~G~r~G~~~~ 244 (391)
T 3h14_A 171 ANPTGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAK---AVTAL---ELTDECYVINSFSKYFSMTGWRVGWMVV 244 (391)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSC---CCCGG---GTCSSSEEEEESSSTTCCTTSCCEEEEC
T ss_pred CCCCCccCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCC---CcChh---hcCCCEEEEEechhccCCccceeEEEEe
Confidence 99999999999999999999999999999999999998762 12221 2257899999999999999999999999
Q ss_pred EcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHhc
Q psy14428 400 LTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEIL 479 (583)
Q Consensus 400 ~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~l 479 (583)
+ +++++.+.........+++.+.|.++...++..
T Consensus 245 --~-----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~--------------------------------------- 278 (391)
T 3h14_A 245 --P-----EDQVRVVERIAQNMFICAPHASQVAALAALDCD--------------------------------------- 278 (391)
T ss_dssp --C-----GGGHHHHHHHHHHTTCCCCHHHHHHHHHHTTCH---------------------------------------
T ss_pred --C-----HHHHHHHHHHHhhhccCCCHHHHHHHHHHhCCh---------------------------------------
Confidence 6 468888888887778889999999888777631
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCCh
Q psy14428 480 SDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSA 536 (583)
Q Consensus 480 ~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~ 536 (583)
+.++++++++.++|+.+.+.|++.+. .....+++++|.|..++.
T Consensus 279 ----------~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~~~~~~~~~~~~~~~~ 322 (391)
T 3h14_A 279 ----------AELQANLDVYKANRKLMLERLPKAGF---TRIAPPDGAFYVYADVSD 322 (391)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHHHHHHTC---CCBCCCCBTTEEEEECTT
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHcCC---CcccCCCeeEEEEEecCc
Confidence 12445566677888888888887642 223567888999986653
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-36 Score=315.47 Aligned_cols=295 Identities=16% Similarity=0.209 Sum_probs=230.0
Q ss_pred CCCccccCCccccCCCCCCCCChHHHHHHHHHhccCC---CCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecC
Q psy14428 162 HPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNL---DHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGI 238 (583)
Q Consensus 162 ~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~---~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~ 238 (583)
.++.|||+.|.++.. +++.+.+++.+.+.... ..+|++..|.++||+++++++.+.+|+.+++++|++ |+
T Consensus 34 ~~~~i~l~~~~~~~~-----~~~~v~~a~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~--~~ 106 (398)
T 3ele_A 34 KENVYDFSIGNPSIP-----APQIVNDTIKELVTDYDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYM--TM 106 (398)
T ss_dssp GGGCEECCSCCCCSC-----CCHHHHHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEE--ES
T ss_pred CCCeEEeecCCCCCC-----CCHHHHHHHHHHHhcCCccccCCcCCCCCcHHHHHHHHHHHHHHhCCCCChHHEEE--cc
Confidence 457899999976522 56888888887775421 467999999999999999999988888899999999 99
Q ss_pred CchhHHHHHHHHHHHhCCCC-CEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeC
Q psy14428 239 SGSGSLRVGTAFLERFYPGV-KTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQT 317 (583)
Q Consensus 239 G~~~al~l~~~~l~~~~~~g-d~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~ 317 (583)
|+++++.++ +..++.+| |+|++++|+|..+...++..|++++.+|+ +++++++|++.+++.+ .+++++++++
T Consensus 107 g~~~al~~~---~~~l~~~g~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~-~~~~~~~d~~~l~~~l---~~~~~~v~~~ 179 (398)
T 3ele_A 107 GAAASLSIC---FRALTSDAYDEFITIAPYFPEYKVFVNAAGARLVEVPA-DTEHFQIDFDALEERI---NAHTRGVIIN 179 (398)
T ss_dssp SHHHHHHHH---HHHHCCSTTCEEEEESSCCTHHHHHHHHTTCEEEEECC-CTTTSSCCHHHHHHTC---CTTEEEEEEC
T ss_pred CHHHHHHHH---HHHHcCCCCCEEEEeCCCchhhHHHHHHcCCEEEEEec-CCcCCcCCHHHHHHHh---CcCCCEEEEc
Confidence 999999985 45567779 99999999999999999999999999999 6556799999998877 5678999999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHh------cCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccC
Q psy14428 318 SSHNPTGVDLSEDQWRQLAVVVKQ------RHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYG 391 (583)
Q Consensus 318 ~p~NPTG~~~s~~~~~~l~~~a~~------~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~G 391 (583)
+||||||.+++.+++++|+++|++ +|++||+||+|.+|.+++. ..+.. .+..+++++++||||.+|++|
T Consensus 180 ~p~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~--~~~~~---~~~~~~~i~~~s~sK~~~~~G 254 (398)
T 3ele_A 180 SPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGI--KVPFV---TKYYDNTLVCYSYSKSLSLPG 254 (398)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTC--CCCCG---GGTCSSEEEEEESTTTSSCTT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCC--CcCCh---HhhcCCeEEEEehhhcCCCcc
Confidence 999999999999999999999999 9999999999999998752 22222 234578999999999999999
Q ss_pred ccceEEEEEcCCch-hHHHHHHHHHHHHhcc-ccCCChHHHHHHHHHhCChhhhhhhhhHHH-HHHHHHHHHhhccC-CC
Q psy14428 392 ERVGTFSVLTPTSD-ETERIMSQLKILIRGF-YSNPPIHGARIVTEILSDPKLKAQCDETER-IMSQLKILIRGFYS-NP 467 (583)
Q Consensus 392 lRiG~lv~~~p~~~-~~~~li~~l~~~~~~~-~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~-~~~~l~~~~r~~~~-~~ 467 (583)
+|+||+++ +++. ....+++.+....... ..+++.+.|.++..++++....++..+.+. +.+.++.+ .+. ..
T Consensus 255 ~r~G~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~l~~~L~~~---g~~~~~ 329 (398)
T 3ele_A 255 ERIGYVLV--PDEVYDKAELYAAVCGAGRALGYVCAPSLFQKMIVKCQGATGDINAYKENRDLLYEGLTRI---GYHCFK 329 (398)
T ss_dssp TCCEEEEC--CTTSTTHHHHHHHHHHHHHHTTCCCSCHHHHHHHTTCTTCCCCHHHHHHHHHHHHHHHHHH---TCCEEC
T ss_pred ceeEEEEE--cchhhhHHHHHHHHHHHhhhccccCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc---CCeecC
Confidence 99999999 6421 0012455555544433 567888999999999887553333333222 22223222 334 45
Q ss_pred ccchhhHHHHhcC
Q psy14428 468 PIHGARIVTEILS 480 (583)
Q Consensus 468 p~~g~~i~~~~l~ 480 (583)
|.++.++|..+..
T Consensus 330 ~~~~~~~~~~~~~ 342 (398)
T 3ele_A 330 PDGAFYMFVKALE 342 (398)
T ss_dssp CSBSSEEEEECSS
T ss_pred CCeeEEEEEEcCC
Confidence 5666668876653
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-36 Score=323.63 Aligned_cols=304 Identities=13% Similarity=0.068 Sum_probs=235.0
Q ss_pred CCCCccccCCccccCCCCCCCC-ChHHHHHH--HHHhcc--CCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEE
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYV-LPSVKEAE--RRIYEK--NLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIV 235 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~-~~~v~~a~--~~~~~~--~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~ 235 (583)
..+..|||+.|.|+.+ .++ .+.+.++. .+.+.+ ....+|++..|.++||++||+++. +++++|++
T Consensus 31 ~~~~~i~~~~G~p~~~---~~p~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~------~~~~~i~~- 100 (427)
T 3ppl_A 31 SKNLKLDLTRGKPSSE---QLDFADELLALPGKGDFKAADGTDVRNYGGLDGIVDIRQIWADLLG------VPVEQVLA- 100 (427)
T ss_dssp HTCCCEECCCCSCCHH---HHHTTGGGGGCSCTTCCBCTTSCBTTSSCCSSCCHHHHHHHHHHHT------SCGGGEEE-
T ss_pred cCCceEecCCCCCChH---HCCCcHHHHHHhhhHHHhhccchhhcCCCCCCCcHHHHHHHHHHhC------CCcceEEE-
Confidence 3456899999998743 111 22455554 444433 235789999999999999999993 67899999
Q ss_pred ecCCchhHHH--HHHHHHHHhCC--C----------CCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHH
Q psy14428 236 QGISGSGSLR--VGTAFLERFYP--G----------VKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMM 301 (583)
Q Consensus 236 ~t~G~~~al~--l~~~~l~~~~~--~----------gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~ 301 (583)
|+|+++++. ++. ..+.. + ||+|++++|+|..+...++..|++++.+|+ ++ .++|++.++
T Consensus 101 -t~G~~~al~~~~~~---~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~~~~~g~~~~~v~~-~~--~g~d~~~l~ 173 (427)
T 3ppl_A 101 -GDASSLNIMFDVIS---WSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFSITERFGFEMISVPM-NE--DGPDMDAVE 173 (427)
T ss_dssp -CSSCHHHHHHHHHH---HHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHTTCEEEEEEE-ET--TEECHHHHH
T ss_pred -eCCcHHHHHHHHHH---HHHhccCCcccccccCCCCCEEEEcCCCcHHHHHHHHHcCCEEEEeCC-CC--CCCCHHHHH
Confidence 999999994 543 23333 3 899999999999999999999999999999 55 369999998
Q ss_pred HHHHcCCCCcEEEE-eCCCCCCCCCCCCHHHHHHHHHHH-HhcCeEEEEeccCCCCCCCCCCCchHHHHHHH---HhcCc
Q psy14428 302 EDIKAMPERSILFL-QTSSHNPTGVDLSEDQWRQLAVVV-KQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFA---KEVGQ 376 (583)
Q Consensus 302 ~~l~~~~~~~~~i~-i~~p~NPTG~~~s~~~~~~l~~~a-~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~---~~~~~ 376 (583)
+.+. .+++++++ +|+||||||.+++.+++++|+++| +++|++||+||+|.++.|++....+.++..+. +..++
T Consensus 174 ~~l~--~~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (427)
T 3ppl_A 174 ELVK--NPQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPNR 251 (427)
T ss_dssp HHTT--STTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTS
T ss_pred HHHh--cCCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECCCcccccCCCCCCccchhhhhhccCCCCc
Confidence 8872 24666665 569999999999999999999999 99999999999999988765211222444432 35679
Q ss_pred EEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCC-hhhhhhhhhHHHHHHH
Q psy14428 377 LCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSD-PKLKAQCDETERIMSQ 455 (583)
Q Consensus 377 vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~ 455 (583)
+|+++||||+ ++||+|+||+++ + +++++.+.........+++.+.|.+++.++++ +.
T Consensus 252 ~i~~~S~SK~-~~~G~r~G~~~~--~-----~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~-------------- 309 (427)
T 3ppl_A 252 FWAFTSTSKI-TLAGAGVSFFLT--S-----AENRKWYTGHAGIRGIGPNKVNQLAHARYFGDAEG-------------- 309 (427)
T ss_dssp EEEEEESTTT-SCTTSSCEEEEC--C-----HHHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSHHH--------------
T ss_pred EEEEechhhc-cCcCccEEEEEc--C-----HHHHHHHHHHhhcccCCCCHHHHHHHHHHHhChhh--------------
Confidence 9999999999 679999999999 7 58999999988888889999999999999886 22
Q ss_pred HHHHHhhccCCCccchhhHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCcccccccccceeecCC
Q psy14428 456 LKILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGS-KKNWDHITNQKGMFCYTGL 534 (583)
Q Consensus 456 l~~~~r~~~~~~p~~g~~i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~-pg~~~~~~~~~g~f~~~~l 534 (583)
|.++++++++.+.++|+.+.+.|++... -+.+.+..+++|+|.|..+
T Consensus 310 --------------------------------~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~ 357 (427)
T 3ppl_A 310 --------------------------------VRAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQWTVPAGGYFISLDV 357 (427)
T ss_dssp --------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEECCCSBSSCEEEEC
T ss_pred --------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeCCCccEEEEEEC
Confidence 2334556666677777777777765210 0135556788999999888
Q ss_pred Chh
Q psy14428 535 SAS 537 (583)
Q Consensus 535 ~~~ 537 (583)
+..
T Consensus 358 ~~~ 360 (427)
T 3ppl_A 358 VPG 360 (427)
T ss_dssp STT
T ss_pred Ccc
Confidence 653
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-36 Score=324.31 Aligned_cols=305 Identities=13% Similarity=0.102 Sum_probs=245.8
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
.+++.|+|+.|.++. + +++.+.+++.+.+......+|++..|.++||++++++++..+|+.+++++|++ |+|+
T Consensus 42 ~g~~~i~l~~~~~~~--~---~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~i~~--t~g~ 114 (437)
T 3g0t_A 42 TGTKFCRMEMGVPGL--P---APQIGIETEIQKLREGVASIYPNLDGLPELKQEASRFAKLFVNIDIPARACVP--TVGS 114 (437)
T ss_dssp HTCCCEECCCCSCCS--C---CCHHHHHHHHHHHHHTGGGSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEE--ESHH
T ss_pred cCCCEEeccCcCCCC--C---CCHHHHHHHHHHHhCCcCcCCCCCCChHHHHHHHHHHHHHhhCCCCCcccEEE--eCCH
Confidence 356889999999742 2 56888888887776433378999999999999999999988889999999999 9999
Q ss_pred hhHHHHHHHHHHHhC--CCCC--EEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEe
Q psy14428 241 SGSLRVGTAFLERFY--PGVK--TVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQ 316 (583)
Q Consensus 241 ~~al~l~~~~l~~~~--~~gd--~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i 316 (583)
++++.++ +..+. .+|| +|++++|+|..+...++..|++++.+|+ +++++.+|++.+++.++ .++++++++
T Consensus 115 t~al~~~---~~~l~~~~~gd~~~Vl~~~p~~~~~~~~~~~~g~~~~~v~~-~~~~~~~d~~~l~~~l~--~~~~~~v~l 188 (437)
T 3g0t_A 115 MQGCFVS---FLVANRTHKNREYGTLFIDPGFNLNKLQCRILGQKFESFDL-FEYRGEKLREKLESYLQ--TGQFCSIIY 188 (437)
T ss_dssp HHHHHHH---HHHHTTSCTTCSCCEEEEESCCHHHHHHHHHHTCCCEEEEG-GGGCTTHHHHHHHHHHT--TTCCCEEEE
T ss_pred HHHHHHH---HHHHhcCCCCCccEEEEeCCCcHhHHHHHHHcCCEEEEEee-cCCCCccCHHHHHHHHh--cCCceEEEE
Confidence 9999985 44565 6799 9999999999999999999999999999 55556689999999884 356788889
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCch---HHH-HHHHHhcCcEEEEecCcccccccCc
Q psy14428 317 TSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDA---FSL-RYFAKEVGQLCLAQSFSKNMGLYGE 392 (583)
Q Consensus 317 ~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~---~~~-~~~~~~~~~vi~i~S~SK~~~l~Gl 392 (583)
++||||||.+++.+++++|+++|+++|++||+||+|.++.+++. .+. +++ ..+.+..++++++.||||.++++|+
T Consensus 189 ~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~ 267 (437)
T 3g0t_A 189 SNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKD-YSHPGEPLYQPSVANYTDNYILALSSSKAFSYAGQ 267 (437)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSC-CCSTTSSCCCCCGGGTCSCEEEEEESTTTTSCGGG
T ss_pred eCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCCC-cCcccccchhhccCCCCCcEEEEEcCccCCCCccc
Confidence 99999999999999999999999999999999999999988641 111 011 2333346899999999999999999
Q ss_pred cceEEEEEcCCchhHHHHHH-H-----------------HHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHH
Q psy14428 393 RVGTFSVLTPTSDETERIMS-Q-----------------LKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMS 454 (583)
Q Consensus 393 RiG~lv~~~p~~~~~~~li~-~-----------------l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~ 454 (583)
|+||+++ + +++++ . +.........+++.+.|.++..++++..
T Consensus 268 r~G~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~------------- 327 (437)
T 3g0t_A 268 RIGVLMI--S-----GKLYEREYPDLEESFGRLRFGEALSSSALYALSSGATHSAQWGMAAMLKACN------------- 327 (437)
T ss_dssp CCEEEEE--C-----HHHHHCBCGGGHHHHSCSBHHHHHHTTHHHHHHSSSCHHHHHHHHHHHHHHH-------------
T ss_pred eeEEEEE--C-----HHHhhhhhhcccccccccchhHHHHHHHHhhhcCCCCHHHHHHHHHHHhCcH-------------
Confidence 9999999 7 57888 7 6666666667888888888877775321
Q ss_pred HHHHHHhhccCCCccchhhHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc------cc-ccc
Q psy14428 455 QLKILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHI------TN-QKG 527 (583)
Q Consensus 455 ~l~~~~r~~~~~~p~~g~~i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~------~~-~~g 527 (583)
.|.++++++++++.++++.+.+.|++.+ +... .+ ++|
T Consensus 328 --------------------------------~~~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~ 371 (437)
T 3g0t_A 328 --------------------------------DGEYNFRDSVIEYGRKARIMKKMFLDNG----FNIVYDKDGNEPLADG 371 (437)
T ss_dssp --------------------------------TTSCCHHHHHHHHHHHHHHHHHHHHTTT----EEESSCEETTEECCSS
T ss_pred --------------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHcC----CEEeccccCCCCCcee
Confidence 1222255667777888999999998863 4444 35 889
Q ss_pred ceeecCCC
Q psy14428 528 MFCYTGLS 535 (583)
Q Consensus 528 ~f~~~~l~ 535 (583)
+|.|..++
T Consensus 372 ~~~~~~~~ 379 (437)
T 3g0t_A 372 FYFTVGYK 379 (437)
T ss_dssp SEEEEEET
T ss_pred EEEEEecC
Confidence 99998765
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-36 Score=318.45 Aligned_cols=300 Identities=13% Similarity=0.134 Sum_probs=234.3
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCC-CCeEEEecCC
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKD-NRLAIVQGIS 239 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~-~~I~i~~t~G 239 (583)
.+++.|||+.|.++ .+ +++.+.+++.+.+......+|++..|..+||+++|+++.+.+|+.+++ ++|++ |+|
T Consensus 35 ~g~~~idl~~g~~~--~~---~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~--t~g 107 (412)
T 2x5d_A 35 RGEDIIDLSMGNPD--GP---TPPHIVEKLCTVAQREDTHGYSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIV--TIG 107 (412)
T ss_dssp TTCCCEECSSCCCC--SC---CCHHHHHHHHHTC---------CTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEE--ESC
T ss_pred cCCCEEecCCCCCC--CC---CCHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCcCEEE--cCC
Confidence 35678999999874 22 457888888877654324579888999999999999998777777888 79999 999
Q ss_pred chhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCC-CCCCChhhHHHHHHcCCCCcEEEEeCC
Q psy14428 240 GSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNK-TNGLDFAGMMEDIKAMPERSILFLQTS 318 (583)
Q Consensus 240 ~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~-~~g~d~~~l~~~l~~~~~~~~~i~i~~ 318 (583)
+++++.++ +..+..+||+|++++|+|..+...++..|++++.+|+ +++ ++.+|++.+++.+ .++++++++++
T Consensus 108 ~~~a~~~~---~~~~~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~d~~~l~~~i---~~~~~~v~l~~ 180 (412)
T 2x5d_A 108 SKEGLAHL---MLATLDHGDTILVPNPSYPIHIYGAVIAGAQVRSVPL-VPGIDFFNELERAIRES---IPKPRMMILGF 180 (412)
T ss_dssp HHHHHHHH---HHHHCCTTCEEEEEESCCHHHHHHHHHHTCEEEEEEC-STTSCHHHHHHHHHHTE---ESCCSEEEEES
T ss_pred hHHHHHHH---HHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEeec-CCccCCCCCHHHHHHhc---ccCceEEEECC
Confidence 99999985 4445677999999999999999999999999999998 443 2235677777665 35677888899
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEE
Q psy14428 319 SHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFS 398 (583)
Q Consensus 319 p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv 398 (583)
||||||.+++.+++++|+++|+++|++||+||+|.++.+++. ...++..+....++++++.||||.+|++|+|+||++
T Consensus 181 p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~ 258 (412)
T 2x5d_A 181 PSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGW--KAPSIMQVPGAKDIAVEFFTLSKSYNMAGWRIGFMV 258 (412)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTC--CCCCGGGSTTGGGTEEEEEECC-CCSCTTSCCEEEE
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC--CCCChhhccCccCcEEEEecCccccCCcccceEEEE
Confidence 999999999999999999999999999999999999988642 222333332224689999999999999999999999
Q ss_pred EEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHh
Q psy14428 399 VLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEI 478 (583)
Q Consensus 399 ~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~ 478 (583)
+ + +++++++.........+++.+.|.++..++++..
T Consensus 259 ~--~-----~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~------------------------------------- 294 (412)
T 2x5d_A 259 G--N-----PELVSALARIKSYHDYGTFTPLQVAAIAALEGDQ------------------------------------- 294 (412)
T ss_dssp E--C-----HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHSCS-------------------------------------
T ss_pred c--C-----HHHHHHHHHHHhhhccCCCHHHHHHHHHHHhCCH-------------------------------------
Confidence 9 6 5889999887766677889999998888775410
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCC
Q psy14428 479 LSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLS 535 (583)
Q Consensus 479 l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~ 535 (583)
++++++++++.++++.+.+.|++.+ +....+++|+|.|..++
T Consensus 295 -----------~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~g~~~~~~~~ 336 (412)
T 2x5d_A 295 -----------QCVRDIARQYQQRRDVLVKGLREAG----WMVENPKASMYVWAKIP 336 (412)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHHHHHT----CCCCCCSBSSEEEEECC
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHCC----CEecCCCeeeEEEEEcC
Confidence 1144556667788888888888764 44566788999998775
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-36 Score=320.69 Aligned_cols=300 Identities=15% Similarity=0.087 Sum_probs=228.9
Q ss_pred CccccCCccccCCCCCCCCChHHHHHHHHHh--cc-CCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 164 KKMNLGVGAYRGEDGKPYVLPSVKEAERRIY--EK-NLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 164 ~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~--~~-~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
..|+|+.|.++.... + +++.+.+++.+.. .. ....+|++..|.++||++||+|+. +++++|++ |+|+
T Consensus 33 ~~i~l~~g~~~~~~~-~-~~~~~~~a~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~------~~~~~i~~--t~G~ 102 (422)
T 3d6k_A 33 LSLDLTRGKPSAEQL-D-LSNDLLSLPGGDFRTKDGVDCRNYGGLLGIADIRELWAEALG------LPADLVVA--QDGS 102 (422)
T ss_dssp CCEECCCCSCCHHHH-H-TTGGGGGCSTTCCBCTTCCBTTSSCCSSCCHHHHHHHHHHHT------CCGGGEEE--CSSC
T ss_pred CeEeCCCCCCChhhC-C-CcHHHHHHHHHHHhhccchhhhCCCCCCCCHHHHHHHHHHhC------CChhHEEE--ecch
Confidence 479999999852100 1 3345666554331 12 135689999999999999999993 67899999 9999
Q ss_pred hhHH--HHHHHHHHHhCCC------------CCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHc
Q psy14428 241 SGSL--RVGTAFLERFYPG------------VKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKA 306 (583)
Q Consensus 241 ~~al--~l~~~~l~~~~~~------------gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~ 306 (583)
++++ .++ +..+.++ +|+|++++|+|..+...++..|++++.+|+ ++ .++|++.+++.+..
T Consensus 103 ~~al~l~~~---~~~l~~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~~~g~~~~~v~~-~~--~g~d~~~l~~~l~~ 176 (422)
T 3d6k_A 103 SLNIMFDLI---SWSYTWGNNDSSRPWSAEEKVKWLCPVPGYDRHFTITEHFGFEMINVPM-TD--EGPDMGVVRELVKD 176 (422)
T ss_dssp HHHHHHHHH---HHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHHTCEEEEEEE-ET--TEECHHHHHHHHTS
T ss_pred HHHHHHHHH---HHHhcCcccccccccccCCCCEEEEeCCccHHHHHHHHHcCCEEEecCC-CC--CCCCHHHHHHHHhc
Confidence 9997 554 3333333 458999999999999999999999999999 55 36999999988832
Q ss_pred CCCCcEEEE-eCCCCCCCCCCCCHHHHHHHHHHHH-hcCeEEEEeccCCC--CCCCCCCCchHHHHHH---HHhcCcEEE
Q psy14428 307 MPERSILFL-QTSSHNPTGVDLSEDQWRQLAVVVK-QRHLYPFFDMAYLG--LTSGDFDKDAFSLRYF---AKEVGQLCL 379 (583)
Q Consensus 307 ~~~~~~~i~-i~~p~NPTG~~~s~~~~~~l~~~a~-~~~i~iI~De~Y~~--l~~~~~~~~~~~~~~~---~~~~~~vi~ 379 (583)
.++++++ +|+||||||.+++.+++++|+++|+ +++++||+||+|.+ |.+++ ....++..+ .+..+++|+
T Consensus 177 --~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~ 252 (422)
T 3d6k_A 177 --PQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEF--PIVHNVIEFAQAAGNPNRFWF 252 (422)
T ss_dssp --TTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCC--CCCCCHHHHHHHTTCTTCEEE
T ss_pred --CCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCccccccCCCC--CCCcChhhHhhccCCCCcEEE
Confidence 2567766 8999999999999999999999999 99999999999986 54432 123344332 234679999
Q ss_pred EecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHH
Q psy14428 380 AQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKIL 459 (583)
Q Consensus 380 i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~ 459 (583)
++||||+ ++||+|+||+++ + +++++.+.........+++.++|.++..++++.
T Consensus 253 ~~S~SK~-~~~GlriG~~~~--~-----~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~------------------- 305 (422)
T 3d6k_A 253 MSSTSKI-THAGSGVSFFAS--S-----KENIEWYASHANVRGIGPNKLNQLAHAQFFGDV------------------- 305 (422)
T ss_dssp EEESTTT-SCTTSSCEEEEC--C-----HHHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSH-------------------
T ss_pred EcChhhh-cCcccceEEEEe--C-----HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCc-------------------
Confidence 9999999 679999999999 7 589999998887777889999999999998761
Q ss_pred HhhccCCCccchhhHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCcccccccccceeecCCCh
Q psy14428 460 IRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSK-KNWDHITNQKGMFCYTGLSA 536 (583)
Q Consensus 460 ~r~~~~~~p~~g~~i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~p-g~~~~~~~~~g~f~~~~l~~ 536 (583)
+.|.++++++++.+.++|+.+.+.|++.... |.+.+..+++|+|.|..++.
T Consensus 306 --------------------------~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~ 357 (422)
T 3d6k_A 306 --------------------------AGLKAHMLKHAASLAPKFERVLEILDSRLSEYGVAKWTSPTGGYFISVDVVP 357 (422)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEECCCSBSSCEEEEEST
T ss_pred --------------------------chHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCceEEeCCCcceEEEEECCC
Confidence 1233446666777778888887777653211 22455678899999987764
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-35 Score=315.17 Aligned_cols=300 Identities=18% Similarity=0.158 Sum_probs=242.6
Q ss_pred CccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCC-CCeEEEecCCchh
Q psy14428 164 KKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKD-NRLAIVQGISGSG 242 (583)
Q Consensus 164 ~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~-~~I~i~~t~G~~~ 242 (583)
..|||+.|.+. ..+ +++.+.+++.+.+.......|.+..|..++|+++++++.+.+|..+++ ++|++ |+|+++
T Consensus 40 ~~id~~~g~~~-~~~---~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~l~~~l~~~~g~~~~~~~~i~~--~~g~~~ 113 (407)
T 3nra_A 40 RPVDFSHGDVD-AHE---PTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLII--TPGTQG 113 (407)
T ss_dssp CCEETTSCCTT-TSC---CCTTHHHHHHHHHHHTHHHHSCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEE--ESHHHH
T ss_pred ceeeecCcCCC-CCC---CcHHHHHHHHHHHhcCCCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEE--eCCcHH
Confidence 47999999875 112 457788887777654323469899999999999999998888888877 79999 999999
Q ss_pred HHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEeccc-----CCCCCCChhhHHHHHHcCCCCcEEEEeC
Q psy14428 243 SLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFD-----NKTNGLDFAGMMEDIKAMPERSILFLQT 317 (583)
Q Consensus 243 al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d-----~~~~g~d~~~l~~~l~~~~~~~~~i~i~ 317 (583)
++.++ +..+..+||+|++++|+|..+...++..|++++.+|+ + ++++++|++.+++.+.. ++++++++
T Consensus 114 a~~~~---~~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~d~~~l~~~l~~---~~~~v~~~ 186 (407)
T 3nra_A 114 ALFLA---VAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQL-DYVSADETRAGLDLTGLEEAFKA---GARVFLFS 186 (407)
T ss_dssp HHHHH---HHTTCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEB-CCCSSCCSSCCBCHHHHHHHHHT---TCCEEEEE
T ss_pred HHHHH---HHHhCCCCCEEEEcCCcccchHHHHHHcCCEEEEeec-ccccccCcCCCcCHHHHHHHHhh---CCcEEEEc
Confidence 99985 4556777999999999999999999999999999998 3 24578999999999853 67788899
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHH-HhcCcEEEEecCcccccccCccceE
Q psy14428 318 SSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFA-KEVGQLCLAQSFSKNMGLYGERVGT 396 (583)
Q Consensus 318 ~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~-~~~~~vi~i~S~SK~~~l~GlRiG~ 396 (583)
+||||||.+++.+++++|+++|+++|++||+||+|.++.+++. ...++..+. ...++++++.||||.+|++|+|+||
T Consensus 187 ~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~--~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~ 264 (407)
T 3nra_A 187 NPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGA--SYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGV 264 (407)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTC--CCCCGGGCTTSCGGGEEEEECSSSTTCCGGGCCEE
T ss_pred CCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCC--CCCChhhcCcccCCcEEEEeCcccccCCCeeeEEE
Confidence 9999999999999999999999999999999999999998762 333343332 2357899999999999999999999
Q ss_pred EEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHH
Q psy14428 397 FSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVT 476 (583)
Q Consensus 397 lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~ 476 (583)
+++ + +++++.+.........+.+.+.|.++..++++..
T Consensus 265 ~~~--~-----~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~----------------------------------- 302 (407)
T 3nra_A 265 AFG--S-----RAIIARMEKLQAIVSLRAAGYSQAVLRGWFDEAP----------------------------------- 302 (407)
T ss_dssp EEE--C-----HHHHHHHHHHHHHHTSSSCHHHHGGGGGTTCCCT-----------------------------------
T ss_pred EEc--C-----HHHHHHHHHHHhhhccCCChHHHHHHHHHHhccc-----------------------------------
Confidence 999 6 6899999988777777888888888777776421
Q ss_pred HhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCCh
Q psy14428 477 EILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSA 536 (583)
Q Consensus 477 ~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~ 536 (583)
+.++++++++.++++.+.+.|+++ | .+....+++|+|.|..++.
T Consensus 303 -------------~~~~~~~~~~~~~~~~l~~~L~~~--~-~~~~~~~~~~~~~~~~~~~ 346 (407)
T 3nra_A 303 -------------GWMEDRIARHQAIRDELLHVLRGC--E-GVFARTPQAGSYLFPRLPK 346 (407)
T ss_dssp -------------THHHHHHHHHHHHHHHHHHHHHTS--T-TCBCCCCSBSSEECCBCCC
T ss_pred -------------hHHHHHHHHHHHHHHHHHHHHhcC--C-CceeccCCeeEEEEEeCCC
Confidence 012334455567788888888775 2 2556678889999988765
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-35 Score=308.42 Aligned_cols=300 Identities=13% Similarity=0.152 Sum_probs=243.1
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
.+++.++|+.|.++. + +++.+.+++.+.++.. ..+|++..|..+||+++++++.+.+|+.+++++|++ |+|+
T Consensus 28 ~g~~~i~l~~~~~~~--~---~~~~v~~a~~~~~~~~-~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~--~~g~ 99 (388)
T 1j32_A 28 EGIDVCSFSAGEPDF--N---TPKHIVEAAKAALEQG-KTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILV--TNGG 99 (388)
T ss_dssp TTCCCEECCCSSCSS--C---CCHHHHHHHHHHHHTT-CCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEE--ESHH
T ss_pred cCCCEEECCCCCCCC--C---CCHHHHHHHHHHHhcC-CCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEE--cCCH
Confidence 456789999998742 2 4578888887776543 467999999999999999999887788888999999 9999
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccC-CCCCCChhhHHHHHHcCCCCcEEEEeCCC
Q psy14428 241 SGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDN-KTNGLDFAGMMEDIKAMPERSILFLQTSS 319 (583)
Q Consensus 241 ~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~-~~~g~d~~~l~~~l~~~~~~~~~i~i~~p 319 (583)
++|+.++ +..+..+||+|++++|+|..+...++..|++++.+|+ ++ +++.+|++.+++.+ .++++++++++|
T Consensus 100 ~~a~~~~---~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~-~~~~~~~~d~~~l~~~l---~~~~~~v~~~~p 172 (388)
T 1j32_A 100 KQSIFNL---MLAMIEPGDEVIIPAPFWVSYPEMVKLAEGTPVILPT-TVETQFKVSPEQIRQAI---TPKTKLLVFNTP 172 (388)
T ss_dssp HHHHHHH---HHHHCCTTCEEEEESSCCTHHHHHHHHTTCEEEEECC-CGGGTTCCCHHHHHHHC---CTTEEEEEEESS
T ss_pred HHHHHHH---HHHhcCCCCEEEEcCCCChhHHHHHHHcCCEEEEecC-CcccCCCCCHHHHHHhc---CcCceEEEEeCC
Confidence 9999985 4445677999999999999999999999999999998 43 24678999998887 457889999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHH-HhcCcEEEEecCcccccccCccceEEE
Q psy14428 320 HNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFA-KEVGQLCLAQSFSKNMGLYGERVGTFS 398 (583)
Q Consensus 320 ~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~-~~~~~vi~i~S~SK~~~l~GlRiG~lv 398 (583)
|||||.+++.+++++|+++|+++|++||+||+|.++.+++. +..++..+. +..++++++.||||.+|++|+|+||++
T Consensus 173 ~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~ 250 (388)
T 1j32_A 173 SNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDA--QHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVGFLA 250 (388)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTC--CCCCGGGSCHHHHHTEEEEEESTTTTTCTTTCCEEEE
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCC--CCCCHHHccccccCCEEEEeechhccCCcccceEEEE
Confidence 99999999999999999999999999999999999988652 222332221 124579999999999999999999999
Q ss_pred EEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHh
Q psy14428 399 VLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEI 478 (583)
Q Consensus 399 ~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~ 478 (583)
+ + +++++++.........+++.+.|.++..+++...
T Consensus 251 ~--~-----~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~------------------------------------- 286 (388)
T 1j32_A 251 G--P-----VPLVKAATKIQGHSTSNVCTFAQYGAIAAYENSQ------------------------------------- 286 (388)
T ss_dssp C--C-----HHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHSCS-------------------------------------
T ss_pred e--C-----HHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCCc-------------------------------------
Confidence 8 6 5789999887777777889999988877765310
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCC
Q psy14428 479 LSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLS 535 (583)
Q Consensus 479 l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~ 535 (583)
++++++++++.++++.+.+.|++. || +....+++|+|.|..++
T Consensus 287 -----------~~~~~~~~~~~~~~~~l~~~L~~~--~g-~~~~~~~~~~~~~~~~~ 329 (388)
T 1j32_A 287 -----------DCVQEMLAAFAERRRYMLDALNAM--PG-LECPKPDGAFYMFPSIA 329 (388)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHHHTC--TT-CBCCCCCBTTEECCBCG
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHhhC--CC-CcccCCCeeEEEEEecC
Confidence 124455666778888888999874 32 55667788999998764
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-34 Score=310.15 Aligned_cols=302 Identities=15% Similarity=0.204 Sum_probs=234.9
Q ss_pred CccccCCccccCCCCCCCCChHHHHHHHHHhc---------c-CCCCCCCCCCCCHHHHHHHHHHHhCCCCCC--CCCCC
Q psy14428 164 KKMNLGVGAYRGEDGKPYVLPSVKEAERRIYE---------K-NLDHEYANIGGDAKFCKLAAQLAYGEDFPA--FKDNR 231 (583)
Q Consensus 164 ~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~---------~-~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~--~~~~~ 231 (583)
..++|+.+.. +.+++.+.+++.+... . .....|+++.|..+||+++|+++++.+|.. +++++
T Consensus 37 ~~i~l~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~~ 110 (428)
T 1iay_A 37 GVIQMGLAEN------QLCLDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPER 110 (428)
T ss_dssp SBEECSSCCC------CSSHHHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTS
T ss_pred ceeeeccccc------hhhHHHHHHHHHhccccccccccccccHhhcCCCCCCCcHHHHHHHHHHHHHhcCCCCCCChhh
Confidence 5577776553 2234577777664321 0 013569888899999999999999877765 78899
Q ss_pred eEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHh-hcCCeEEEEecccC-CCCCCChhhHHHHHHc---
Q psy14428 232 LAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCT-DSRLNVGAYRYFDN-KTNGLDFAGMMEDIKA--- 306 (583)
Q Consensus 232 I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~-~~G~~~~~v~~~d~-~~~g~d~~~l~~~l~~--- 306 (583)
|++ |+|+++++.++ +..++.+||+|++++|+|..+...+. ..|++++.+|+ +. +++++|++.+++.++.
T Consensus 111 i~~--~~G~~~ai~~~---~~~~~~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~v~~-~~~~~~~~d~~~l~~~l~~~~~ 184 (428)
T 1iay_A 111 VVM--AGGATGANETI---IFCLADPGDAFLVPSPYYPAFNRDLRWRTGVQLIPIHC-ESSNNFKITSKAVKEAYENAQK 184 (428)
T ss_dssp CEE--EEHHHHHHHHH---HHHHCCTTCEEEEESSCCTTHHHHTTTTTCCEEEEECC-CTTTTTCCCHHHHHHHHHHHHH
T ss_pred EEE--ccChHHHHHHH---HHHhCCCCCeEEEccCCCcchHHHHHHhcCCEEEEeec-CCccCCcCCHHHHHHHHHHHHh
Confidence 999 99999999985 44566779999999999999987554 68999999998 43 3467899999988854
Q ss_pred CCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHh-------cCcEEE
Q psy14428 307 MPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKE-------VGQLCL 379 (583)
Q Consensus 307 ~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~-------~~~vi~ 379 (583)
...++++++++|||||||.+++.+++++|+++|++++++||+||+|.++.+++ ....++..+... .+++++
T Consensus 185 ~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~viv 262 (428)
T 1iay_A 185 SNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDT--PQFVSIAEILDEQEMTYCNKDLVHI 262 (428)
T ss_dssp TTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSS--SCCCCHHHHHTSGGGTTSCTTSEEE
T ss_pred cCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEeccccccccCC--CCccCHHHhccccccccCCCCcEEE
Confidence 23468889999999999999999999999999999999999999999988864 223344454333 579999
Q ss_pred EecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHH
Q psy14428 380 AQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKIL 459 (583)
Q Consensus 380 i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~ 459 (583)
+.||||.||++|+|+||+++ ++ +++++++.+... ..+++.++|.++..++++..+
T Consensus 263 ~~s~sK~~g~~Glr~G~~~~--~~----~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~~~----------------- 317 (428)
T 1iay_A 263 VYSLSKDMGLPGFRVGIIYS--FN----DDVVNCARKMSS--FGLVSTQTQYFLAAMLSDEKF----------------- 317 (428)
T ss_dssp EEESTTTSSCGGGCEEEEEE--SC----HHHHHHHHHHHT--TSCCCHHHHHHHHHHTTCHHH-----------------
T ss_pred EecchhhcCCCCceEEEEEe--CC----HHHHHHHHHHHh--cccCCHHHHHHHHHHhcChHH-----------------
Confidence 99999999999999999999 65 468888876543 357889999999998876321
Q ss_pred HhhccCCCccchhhHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCCh
Q psy14428 460 IRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSA 536 (583)
Q Consensus 460 ~r~~~~~~p~~g~~i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~ 536 (583)
+.++++++++++.++++.+.+.|++.+ +.+..+++|+|.|..++.
T Consensus 318 ----------------------------~~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~g~~~~~~~~~ 362 (428)
T 1iay_A 318 ----------------------------VDNFLRESAMRLGKRHKHFTNGLEVVG----IKCLKNNAGLFCWMDLRP 362 (428)
T ss_dssp ----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHTT----CCBCCCSSSSEEEEECGG
T ss_pred ----------------------------HHHHHHHHHHHHHHHHHHHHHHHHhcC----CcccCCCeeEEEEEechh
Confidence 112355667777888999999998864 445566789999987754
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-35 Score=307.94 Aligned_cols=254 Identities=17% Similarity=0.132 Sum_probs=213.9
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
.+++.++|+.|.++. + +++.+.+++.+.+... ...|++..|..+||+++++++.+.+|+++++++|++ |+|+
T Consensus 39 ~g~~~i~l~~~~~~~--~---~~~~v~~a~~~~~~~~-~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~v~~--~~g~ 110 (389)
T 1o4s_A 39 KGEDVINLTAGEPDF--P---TPEPVVEEAVRFLQKG-EVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVV--TNGA 110 (389)
T ss_dssp TTCCCEECCCSSCSS--C---CCHHHHHHHHHHHTTC-CCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEE--ESHH
T ss_pred cCCCEEEccCCCCCC--C---CCHHHHHHHHHHHhcC-CCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEE--ecCH
Confidence 356789999998742 2 3578888888777543 457988899999999999999877788788999999 9999
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccC-CCCCCChhhHHHHHHcCCCCcEEEEeCCC
Q psy14428 241 SGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDN-KTNGLDFAGMMEDIKAMPERSILFLQTSS 319 (583)
Q Consensus 241 ~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~-~~~g~d~~~l~~~l~~~~~~~~~i~i~~p 319 (583)
++++.++ +..+..+||+|++++|+|..+...++..|++++.+|+ ++ +++++|++.+++.+ .++++++++++|
T Consensus 111 t~al~~~---~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~-~~~~~~~~d~~~l~~~l---~~~~~~v~~~~p 183 (389)
T 1o4s_A 111 KQALFNA---FMALLDPGDEVIVFSPVWVSYIPQIILAGGTVNVVET-FMSKNFQPSLEEVEGLL---VGKTKAVLINSP 183 (389)
T ss_dssp HHHHHHH---HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEEC-CGGGTTCCCHHHHHHTC---CTTEEEEEEESS
T ss_pred HHHHHHH---HHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEEec-CCccCCCCCHHHHHHhc---ccCceEEEEcCC
Confidence 9999986 4445677999999999999999999999999999998 44 34678999998877 457888999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEE
Q psy14428 320 HNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSV 399 (583)
Q Consensus 320 ~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~ 399 (583)
|||||.+++.+++++|+++|+++|++||+||+|.++.+++ ...++..+....+++++++||||.+|++|+|+||+++
T Consensus 184 ~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g---~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~l~~ 260 (389)
T 1o4s_A 184 NNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTD---EFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYLIS 260 (389)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSS---CCCCHHHHCSSSTTEEEEEESTTTTTCGGGCCEEEEC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCC---CCCCHhhcCCCCCcEEEEeechhhcCCcccceEEEEe
Confidence 9999999999999999999999999999999999998864 2234444422257899999999999999999999999
Q ss_pred EcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCC
Q psy14428 400 LTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSD 439 (583)
Q Consensus 400 ~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~ 439 (583)
+ +++++++.........+++.+.|.++..++++
T Consensus 261 --~-----~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~ 293 (389)
T 1o4s_A 261 --S-----EKVATAVSKIQSHTTSCINTVAQYAALKALEV 293 (389)
T ss_dssp --C-----HHHHHHHHHHHHHHTCSCCHHHHHHHHHHTTC
T ss_pred --C-----HHHHHHHHHHhhhcccCCCHHHHHHHHHHHhc
Confidence 6 57899988877666678899999988888875
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-35 Score=316.92 Aligned_cols=294 Identities=15% Similarity=0.156 Sum_probs=232.7
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhcc----CCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEe
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEK----NLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQ 236 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~----~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~ 236 (583)
.+++.|+|+.|+++.. +++.+.+++.+.... .....|++..|.++||+++++++. +|+.+++++|++
T Consensus 67 ~~~~~i~l~~g~~~~~-----~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~--~g~~~~~~~i~~-- 137 (449)
T 3qgu_A 67 PDAKIISLGIGDTTEP-----LPKYIADAMAKAAAGLATREGYSGYGAEQGQGALREAVASTFY--GHAGRAADEIFI-- 137 (449)
T ss_dssp TTCCCEECSSCCCCCC-----CCHHHHHHHHHHHHGGGGSCCCCCSTTTTCCHHHHHHHHHHHH--TTTTCCGGGEEE--
T ss_pred CCCCEEEeeCCCCCCC-----CCHHHHHHHHHHHHhhccccCCCCCCCCCCcHHHHHHHHHHHH--cCCCCCHHHEEE--
Confidence 4668999999976522 457788887776653 235679999999999999999998 788899999999
Q ss_pred cCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCe----------EEEEecccCCCCCCChhhHHHHHHc
Q psy14428 237 GISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLN----------VGAYRYFDNKTNGLDFAGMMEDIKA 306 (583)
Q Consensus 237 t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~----------~~~v~~~d~~~~g~d~~~l~~~l~~ 306 (583)
|+|+++++.++ ..+..+||+|++++|+|..+...++..|++ ++.+|+.+.+++..+++.
T Consensus 138 t~G~~~al~~~----~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 206 (449)
T 3qgu_A 138 SDGSKCDIARI----QMMFGSKPTVAVQDPSYPVYVDTSVMMGMTGDHNGTGFDGIEYMVCNPDNHFFPDLSK------- 206 (449)
T ss_dssp ESCHHHHHHHH----HHHHCSSSCEEEEESCCTHHHHHHHHHTCSCCBCSSSBTTEEEEECCGGGTTCCCGGG-------
T ss_pred ccCHHHHHHHH----HHHhCCCCEEEEcCCCChhHHHHHHHcCCcccccccccceeEEEecccccCCcCChhH-------
Confidence 99999999985 233456999999999999999999999999 999998322223333322
Q ss_pred CCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCccc
Q psy14428 307 MPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKN 386 (583)
Q Consensus 307 ~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~ 386 (583)
.++++++++++||||||.+++.+++++|+++|+++|++||+||+|.+|.+++. .+.++..+....+++|++.||||+
T Consensus 207 -~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~--~~~~~~~~~~~~~~~i~~~s~sK~ 283 (449)
T 3qgu_A 207 -AKRTDIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPD--CPKTIYEIPGADEVAIETCSFSKY 283 (449)
T ss_dssp -CCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTT--SCSSGGGSTTGGGTEEEEEECSGG
T ss_pred -cCCCCEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCC--CCCCHhhccCCCCcEEEEecchhh
Confidence 15677888889999999999999999999999999999999999999998752 233444433335789999999999
Q ss_pred ccccCccceEEEEEcCCchhHHHHHH--------HHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHH
Q psy14428 387 MGLYGERVGTFSVLTPTSDETERIMS--------QLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKI 458 (583)
Q Consensus 387 ~~l~GlRiG~lv~~~p~~~~~~~li~--------~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~ 458 (583)
+|++|+|+||+++ ++ ++++ .+.......+.+++.++|.++..++++..
T Consensus 284 ~g~~G~r~G~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~----------------- 339 (449)
T 3qgu_A 284 AGFTGVRLGWTVV--PK-----ALKYANGEPVHADWNRVMTTCFNGASNIVQAGGLACLQPEG----------------- 339 (449)
T ss_dssp GTCTTCCCEEEEC--CT-----TCBCTTSCBHHHHHHHHHHHSCCCCCHHHHHHHHHHTSHHH-----------------
T ss_pred cCCccceeEEEec--CH-----HHHhhhhhhHHHHHHHHhhcccCCCCHHHHHHHHHHHhhcC-----------------
Confidence 9999999999999 63 3443 45555566667889999998888876411
Q ss_pred HHhhccCCCccchhhHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCC
Q psy14428 459 LIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLS 535 (583)
Q Consensus 459 ~~r~~~~~~p~~g~~i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~ 535 (583)
.++++++++++.++++.+.+.|++.+ +.+..+++|+|.|..++
T Consensus 340 ------------------------------~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~ 382 (449)
T 3qgu_A 340 ------------------------------LKEMNAMIKFYKENAQILKTTFTEMG----FSVYGGDDAPYIWVGFP 382 (449)
T ss_dssp ------------------------------HHHHHHHHHHHHHHHHHHHHHHHHTT----CCEEESSSSSEEEEECT
T ss_pred ------------------------------HHHHHHHHHHHHHHHHHHHHHHHHCC----CeeeCCCCeeEEEEECC
Confidence 12356677788889999999998864 55667888999998876
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-35 Score=314.67 Aligned_cols=306 Identities=13% Similarity=0.099 Sum_probs=245.2
Q ss_pred CCccccCCccccCCCCCCCCChHHHHHHHHHhccC--CCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCC-CeEEEecCC
Q psy14428 163 PKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKN--LDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDN-RLAIVQGIS 239 (583)
Q Consensus 163 ~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~--~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~-~I~i~~t~G 239 (583)
++.|+|+.|.++ .+ +++.+.+++.+.+... ...+|++..|.++||+++++++.+.+|..++++ +|++ |+|
T Consensus 37 ~~~i~l~~~~~~--~~---~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~--~~g 109 (429)
T 1yiz_A 37 YKPLNLGQGFPD--YH---APKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLV--TVG 109 (429)
T ss_dssp HCCEECCSSSCS--SC---CCHHHHHHHHHHHTCSCGGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCCTTTSEEE--ESH
T ss_pred CCEEEecCCCCC--CC---CCHHHHHHHHHHHhccccCccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcCCEEE--ecC
Confidence 467999999874 22 4578888888777541 246798889999999999999987777778899 9999 999
Q ss_pred chhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCC---------CCCCChhhHHHHHHcCCCC
Q psy14428 240 GSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNK---------TNGLDFAGMMEDIKAMPER 310 (583)
Q Consensus 240 ~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~---------~~g~d~~~l~~~l~~~~~~ 310 (583)
+++++.++ +..++.+||+|++++|+|..+...++..|++++.+|+ +++ ++++|++.+++.+ .++
T Consensus 110 ~~~a~~~~---~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~d~~~l~~~l---~~~ 182 (429)
T 1yiz_A 110 AYEALYAT---IQGHVDEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPL-KPNKTGGTISSADWVLDNNELEALF---NEK 182 (429)
T ss_dssp HHHHHHHH---HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEEC-BCCCSSSSEEGGGCBCCHHHHHHHC---CTT
T ss_pred hHHHHHHH---HHHhcCCCCEEEEcCCCchhHHHHHHHcCCEEEEEeC-CcccccccccccCcccCHHHHHHHh---ccC
Confidence 99999985 4445677999999999999999999999999999998 543 4678999998887 467
Q ss_pred cEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCccccccc
Q psy14428 311 SILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLY 390 (583)
Q Consensus 311 ~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~ 390 (583)
++++++++||||||.+++.+++++|+++|+++|++||+||+|.++.+++. ...++..+.+..++++++.||||.+|++
T Consensus 183 ~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~s~sK~~~~~ 260 (429)
T 1yiz_A 183 TKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPF--EHIRICTLPGMWERTITIGSAGKTFSLT 260 (429)
T ss_dssp EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTS--CCCCGGGSTTTGGGEEEEEEHHHHHTCG
T ss_pred ceEEEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccccccccCCC--CCcChhhccCCcCceEEEecchhccCCC
Confidence 88899999999999999999999999999999999999999999988652 2223333222356899999999999999
Q ss_pred CccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccc
Q psy14428 391 GERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIH 470 (583)
Q Consensus 391 GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~ 470 (583)
|+|+||+++ + +++++.+.........+++.+.|.++..++++..
T Consensus 261 G~r~G~~~~--~-----~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~----------------------------- 304 (429)
T 1yiz_A 261 GWKIGWAYG--P-----EALLKNLQMVHQNCVYTCATPIQEAIAVGFETEL----------------------------- 304 (429)
T ss_dssp GGCCEEEES--C-----HHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHH-----------------------------
T ss_pred CcceEEEEe--C-----HHHHHHHHHHHhhcccCCChHHHHHHHHHHhccc-----------------------------
Confidence 999999999 6 5789999887776777889999988887775400
Q ss_pred hhhHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCCh
Q psy14428 471 GARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSA 536 (583)
Q Consensus 471 g~~i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~ 536 (583)
..+. .+.+.++++++++.++++.+.+.|++.+ +.+..+++|+|.|..++.
T Consensus 305 -----~~~~-------~~~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~g~~~~~~~~~ 354 (429)
T 1yiz_A 305 -----KRLK-------SPECYFNSISGELMAKRDYMASFLAEVG----MNPTVPQGGYFMVADWSS 354 (429)
T ss_dssp -----TTTT-------STTSHHHHHHHHHHHHHHHHHHHHHHHT----CEEEECSBSSEEEEECCS
T ss_pred -----cccc-------chHHHHHHHHHHHHHHHHHHHHHHHhCC----CcccCCCcceEEEEEccc
Confidence 0000 0112255667777888999999998864 455667889999987754
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-34 Score=306.30 Aligned_cols=303 Identities=18% Similarity=0.197 Sum_probs=240.3
Q ss_pred CccccCCccccCCCCCCCCChHHHHHHHHHhccC--CCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCch
Q psy14428 164 KKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKN--LDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGS 241 (583)
Q Consensus 164 ~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~--~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~ 241 (583)
+.|||+.|.++.. .++++.+.+++.+.+... ... |++..|..+||+++++++.+.+|+.+++++|++ |+|++
T Consensus 35 ~~idl~~g~~~~~---~~~~~~v~~a~~~~~~~~~~~~~-y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~--t~g~t 108 (407)
T 2zc0_A 35 KLISLAAGDPDPE---LIPRAVLGEIAKEVLEKEPKSVM-YTPANGIPELREELAAFLKKYDHLEVSPENIVI--TIGGT 108 (407)
T ss_dssp CCEECCSCCCCTT---TSCHHHHHHHHHHHHHHCGGGGS-CCCTTCCHHHHHHHHHHHHHHSCCCCCGGGEEE--ESHHH
T ss_pred ceEeCCCCCCCch---hCCHHHHHHHHHHHHhhcccccc-CCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEE--ecCHH
Confidence 6899999987533 235578888887776542 235 988899999999999999876777788999999 99999
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHc---CCCCcEEE-EeC
Q psy14428 242 GSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKA---MPERSILF-LQT 317 (583)
Q Consensus 242 ~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~---~~~~~~~i-~i~ 317 (583)
+|+.++ +..+..+||+|++++|+|..+...++..|++++.+|+ ++ .++|++.+++.+.. ...+++++ +++
T Consensus 109 ~a~~~~---~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~-~~--~~~d~~~l~~~l~~~~~~~~~~~~v~~~~ 182 (407)
T 2zc0_A 109 GALDLL---GRVLIDPGDVVITENPSYINTLLAFEQLGAKIEGVPV-DN--DGMRVDLLEEKIKELKAKGQKVKLIYTIP 182 (407)
T ss_dssp HHHHHH---HHHHCCTTCEEEEEESCCHHHHHHHHTTTCEEEEEEE-ET--TEECHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred HHHHHH---HHHhcCCCCEEEEeCCChHHHHHHHHHcCCEEEEccc-CC--CCCCHHHHHHHHHhhhcccCCceEEEECC
Confidence 999985 4445667999999999999999999999999999998 54 35899999998851 11356665 689
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEE
Q psy14428 318 SSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTF 397 (583)
Q Consensus 318 ~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~l 397 (583)
+||||||.+++.+++++|+++|+++|++||+||+|.++.+++. ...++..+ +..+++++++||||.++ +|+|+||+
T Consensus 183 ~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~--~~~~~~~~-~~~~~~i~~~s~sK~~~-~G~r~G~~ 258 (407)
T 2zc0_A 183 TGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGG--DIVPLKAL-DNEGRVIVAGTLSKVLG-TGFRIGWI 258 (407)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCS--SCCCGGGG-CSSCCEEEEEESTTTTC-TTSCCEEE
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCC--CCCChhhc-CCCCCEEEEcccccccC-CCcceEEE
Confidence 9999999999999999999999999999999999999988652 22333333 23468999999999999 99999999
Q ss_pred EEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHH
Q psy14428 398 SVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTE 477 (583)
Q Consensus 398 v~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~ 477 (583)
++ + +++++++.........+++.+.|.++..++++..++
T Consensus 259 ~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------------------------------- 297 (407)
T 2zc0_A 259 IA--E-----GEILKKVLMQKQPIDFCAPAISQYIALEYLKRGYFE---------------------------------- 297 (407)
T ss_dssp EC--C-----HHHHHHHHHHHTTTTSSSCHHHHHHHHHHHHTTHHH----------------------------------
T ss_pred ec--C-----HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHcCCch----------------------------------
Confidence 99 6 578999988777667778999999888888653211
Q ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCCh
Q psy14428 478 ILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSA 536 (583)
Q Consensus 478 ~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~ 536 (583)
.++++++++++.++++.+.+.|++.. || +....+++|+|.|..++.
T Consensus 298 -----------~~~~~~~~~~~~~~~~~l~~~L~~~~-~~-~~~~~~~~~~~~~~~~~~ 343 (407)
T 2zc0_A 298 -----------KYHLEGALLGYKEKRDIMLKALENHL-PN-AEFTKPIAGMFVMFFLPE 343 (407)
T ss_dssp -----------HHTTTTHHHHHHHHHHHHHHHHHHHC-TT-SCBCCCSBSSEEEEECST
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHhC-CC-CEEecCCCcEEEEEEcCC
Confidence 01234455566778888888887753 33 555567889999987753
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-35 Score=308.50 Aligned_cols=302 Identities=13% Similarity=0.124 Sum_probs=239.9
Q ss_pred CCCCccccCCccccC-CCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCC
Q psy14428 161 PHPKKMNLGVGAYRG-EDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGIS 239 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~-~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G 239 (583)
.+++.++|+.|.+.. ..+ +++.+.+++.+.+... ...|++..|.++||+++++++...+|+.+++++|++ |+|
T Consensus 36 ~g~~~i~l~~~~~~~~~~~---~~~~v~~a~~~~~~~~-~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~v~~--t~g 109 (406)
T 1xi9_A 36 KGIKVIRLNIGDPVKFDFQ---PPEHMKEAYCKAIKEG-HNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRV--TAA 109 (406)
T ss_dssp TTCCCEECCCCCGGGTTCC---CCHHHHHHHHHHHHTT-CCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEE--ESH
T ss_pred cCCCEEEecCCCCCcCCCC---CCHHHHHHHHHHHhcC-CCCCCCCCCcHHHHHHHHHHHHHhcCCCCCHHHEEE--cCC
Confidence 356789999998832 112 4578888887776543 357988899999999999999888888889999999 999
Q ss_pred chhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccC-CCCCCChhhHHHHHHcCCCCcEEEEeCC
Q psy14428 240 GSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDN-KTNGLDFAGMMEDIKAMPERSILFLQTS 318 (583)
Q Consensus 240 ~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~-~~~g~d~~~l~~~l~~~~~~~~~i~i~~ 318 (583)
+++|+.++ +..+..+||+|++++|+|..+...++..|++++.+|+ ++ +++.+|++.+++.+ .++++++++++
T Consensus 110 ~~~al~~~---~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~-~~~~~~~~d~~~l~~~l---~~~~~~v~i~~ 182 (406)
T 1xi9_A 110 VTEALQLI---FGALLDPGDEILVPGPSYPPYTGLVKFYGGKPVEYRT-IEEEDWQPDIDDIRKKI---TDRTKAIAVIN 182 (406)
T ss_dssp HHHHHHHH---HHHHCCTTCEEEEEESCCHHHHHHHHHTTCEEEEEEE-EGGGTSEECHHHHHHHC---CTTEEEEEEES
T ss_pred hHHHHHHH---HHHhCCCCCEEEEcCCCCccHHHHHHHcCCEEEEeec-CCCcCCcCCHHHHHHhh---CcCceEEEEEC
Confidence 99999986 4445677999999999999999999999999999998 44 34568999998887 45788889999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCc-EEEEecCcccccccCccceEE
Q psy14428 319 SHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQ-LCLAQSFSKNMGLYGERVGTF 397 (583)
Q Consensus 319 p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~-vi~i~S~SK~~~l~GlRiG~l 397 (583)
||||||.+++.+++++|+++|+++|++||+||+|.++.+++ ...++..+ + .++ +|+++||||.++++|+|+||+
T Consensus 183 p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~---~~~~~~~~-~-~~~~~i~~~s~sK~~~~~G~r~G~~ 257 (406)
T 1xi9_A 183 PNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEG---EHISPGSL-T-KDVPVIVMNGLSKVYFATGWRLGYM 257 (406)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSS---CCCCHHHH-C-SSSCEEEEEESTTTTCCGGGCCEEE
T ss_pred CCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCccccccCC---CCCCHHHc-C-CCceEEEEeccccccCCCccEEEEE
Confidence 99999999999999999999999999999999999998843 23345554 3 577 999999999999999999999
Q ss_pred E--EEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHH
Q psy14428 398 S--VLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIV 475 (583)
Q Consensus 398 v--~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~ 475 (583)
+ + ++. ...++++++....... .+++.+.|.++..+++...
T Consensus 258 ~~~~--~~~-~~~~l~~~l~~~~~~~-~~~~~~~~~a~~~~l~~~~---------------------------------- 299 (406)
T 1xi9_A 258 YFVD--PEN-KLSEVREAIDRLARIR-LCPNTPAQFAAIAGLTGPM---------------------------------- 299 (406)
T ss_dssp EEEC--TTC-TTHHHHHHHHHHHHHT-CCSCSHHHHHHHHHHHSCC----------------------------------
T ss_pred EEec--Cch-hHHHHHHHHHHHHHhh-cCCCHHHHHHHHHHHhCCc----------------------------------
Confidence 9 6 620 0016888888766555 6788888888887774210
Q ss_pred HHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCC
Q psy14428 476 TEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLS 535 (583)
Q Consensus 476 ~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~ 535 (583)
+.++++++++.++++.+.+.|++. || +....+++|+|.|..++
T Consensus 300 --------------~~~~~~~~~~~~~~~~l~~~L~~~--~~-~~~~~~~~~~~~~~~~~ 342 (406)
T 1xi9_A 300 --------------DYLKEYMKKLKERRDYIYKRLNEI--PG-ISTTKPQGAFYIFPKIE 342 (406)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHHHHTS--TT-EECCCCCBSSEECCEEC
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHhC--CC-CeeecCCeeEEEEEecC
Confidence 013455666678888888888874 33 55566788999997654
|
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-34 Score=306.52 Aligned_cols=303 Identities=16% Similarity=0.207 Sum_probs=238.1
Q ss_pred CccccCCccccCCCCCCCCChHHHHHHHHHhccC-----------CCCCCCCCCCCHHHHHHHHHHHhC--CCCCCCCCC
Q psy14428 164 KKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKN-----------LDHEYANIGGDAKFCKLAAQLAYG--EDFPAFKDN 230 (583)
Q Consensus 164 ~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~-----------~~~~Y~~~~G~~~Lr~aia~~~~~--~~g~~~~~~ 230 (583)
..|+|+.+.. +...+.+.+++.+..... ...+|.+..|.++||+++++++++ .+++.++++
T Consensus 39 ~~i~lg~~~~------~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~ 112 (435)
T 3piu_A 39 GIIQMGLAEN------QLCFDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPN 112 (435)
T ss_dssp SBEECSSCCC------CSSHHHHHHHHHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSCCCGG
T ss_pred CeEEeccccc------cccHHHHHHHHHhCccccccccccccccccccccCCCCCcHHHHHHHHHHHHHhhCCCCCCCHH
Confidence 4567877554 334577777776654321 015699999999999999999984 344678899
Q ss_pred CeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHh-hcCCeEEEEecccCCCCCCChhhHHHHHHcC--
Q psy14428 231 RLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCT-DSRLNVGAYRYFDNKTNGLDFAGMMEDIKAM-- 307 (583)
Q Consensus 231 ~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~-~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~-- 307 (583)
+|++ |+|+++|+.++ +..++.+||.|++++|+|..+...+. ..|++++.+++.+..++.+|++.+++.+++.
T Consensus 113 ~v~~--~~gg~~a~~~~---~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~ 187 (435)
T 3piu_A 113 HLVL--TAGATSANETF---IFCLADPGEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEK 187 (435)
T ss_dssp GEEE--EEHHHHHHHHH---HHHHCCTTCEEEEEESCCTTHHHHTTTTTCCEEEEEECCGGGTSCCCHHHHHHHHHHHHH
T ss_pred HEEE--cCChHHHHHHH---HHHhcCCCCeEEECCCccccHHHHHHHhcCCEEEEeeCCCccCCcCCHHHHHHHHHHHHh
Confidence 9999 99999999985 45567779999999999999998888 7899999999833234668999999988642
Q ss_pred -CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHh---------cCcE
Q psy14428 308 -PERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKE---------VGQL 377 (583)
Q Consensus 308 -~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~---------~~~v 377 (583)
..+++++++++||||||.+++.+++++|+++|+++|++||+||+|.++.+.+ ....++..+... .+++
T Consensus 188 ~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~--~~~~~~~~~~~~~~~d~~~~~~~~~ 265 (435)
T 3piu_A 188 RNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSS--PSFISVMEVLKDRNCDENSEVWQRV 265 (435)
T ss_dssp TTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSS--SCCCCHHHHHHC-------CGGGGE
T ss_pred cCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccccccccCC--CCCcCHHHhccccccccccCCCCCE
Confidence 3478899999999999999999999999999999999999999999988876 233445554333 5789
Q ss_pred EEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHH
Q psy14428 378 CLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLK 457 (583)
Q Consensus 378 i~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~ 457 (583)
++++||||.+|++|+|+||+++ ++ +.+++.+.+... ..+.+.+.|.+++.++++..+
T Consensus 266 i~i~s~sK~~g~~G~r~G~~~~--~~----~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~--------------- 322 (435)
T 3piu_A 266 HVVYSLSKDLGLPGFRVGAIYS--ND----DMVVAAATKMSS--FGLVSSQTQHLLSAMLSDKKL--------------- 322 (435)
T ss_dssp EEEEESSSSSCCGGGCEEEEEE--SC----HHHHHHHHHHGG--GSCCCHHHHHHHHHHHHCHHH---------------
T ss_pred EEEEeeecccCCCceeEEEEEe--CC----HHHHHHHHHHhh--cCCCCHHHHHHHHHHhcChHH---------------
Confidence 9999999999999999999999 75 467777765432 346788888888888765321
Q ss_pred HHHhhccCCCccchhhHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCCh
Q psy14428 458 ILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSA 536 (583)
Q Consensus 458 ~~~r~~~~~~p~~g~~i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~ 536 (583)
..++++++++++.++++.+.+.|++.+ +.+..+++|+|.|..++.
T Consensus 323 ------------------------------~~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~g~~~~~~l~~ 367 (435)
T 3piu_A 323 ------------------------------TKNYIAENHKRLKQRQKKLVSGLQKSG----ISCLNGNAGLFCWVDMRH 367 (435)
T ss_dssp ------------------------------HHHHHHHHHHHHHHHHHHHHHHHHTTT----CEECCCCSSSEEEEECGG
T ss_pred ------------------------------HHHHHHHHHHHHHHHHHHHHHHHHhcC----CcccCCCeeEEEEEEccc
Confidence 122356677788889999999998764 556678889999988764
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-35 Score=311.49 Aligned_cols=299 Identities=14% Similarity=0.117 Sum_probs=240.9
Q ss_pred CCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCC-CeEEEecCCc
Q psy14428 162 HPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDN-RLAIVQGISG 240 (583)
Q Consensus 162 ~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~-~I~i~~t~G~ 240 (583)
.++.|+|+.|.++. + +++.+.+++.+.+.+. ...|++..|.++||+++++++.+.+|+.++++ +|++ |+|+
T Consensus 24 ~~~~i~l~~~~~~~--~---~~~~v~~a~~~~~~~~-~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~--t~g~ 95 (411)
T 2o0r_A 24 RIGAVNLGQGFPDE--D---GPPKMLQAAQDAIAGG-VNQYPPGPGSAPLRRAIAAQRRRHFGVDYDPETEVLV--TVGA 95 (411)
T ss_dssp TTTCEESSCSSCSS--C---CCHHHHHHHHHHHHTT-CCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEE--EEHH
T ss_pred cCCeeeccCcCCCC--C---CCHHHHHHHHHHHhcC-CCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCCceEEE--eCCH
Confidence 34679999998742 2 4578888888877653 56799999999999999999987778888888 9999 9999
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCC--CCCCChhhHHHHHHcCCCCcEEEEeCC
Q psy14428 241 SGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNK--TNGLDFAGMMEDIKAMPERSILFLQTS 318 (583)
Q Consensus 241 ~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~--~~g~d~~~l~~~l~~~~~~~~~i~i~~ 318 (583)
++|+.++ +..+..+||+|++++|+|..+...++..|++++.+|+ +++ ++.+|++.+++.+ .++++++++++
T Consensus 96 ~~al~~~---~~~~~~~gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~-~~~~~~~~~d~~~l~~~l---~~~~~~v~l~~ 168 (411)
T 2o0r_A 96 TEAIAAA---VLGLVEPGSEVLLIEPFYDSYSPVVAMAGAHRVTVPL-VPDGRGFALDADALRRAV---TPRTRALIINS 168 (411)
T ss_dssp HHHHHHH---HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEEC-EEETTEEECCHHHHHHHC---CTTEEEEEEES
T ss_pred HHHHHHH---HHHhcCCCCEEEEeCCCcHhHHHHHHHcCCEEEEeec-cccccCCCCCHHHHHHhh---ccCceEEEEeC
Confidence 9999985 4445677999999999999999999999999999998 443 3558999998887 45788999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEE
Q psy14428 319 SHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFS 398 (583)
Q Consensus 319 p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv 398 (583)
||||||.+++.+++++|+++|+++|++||+||+|.++.+++. ...++..+....++++++.||||.+|++|+|+||++
T Consensus 169 ~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~ 246 (411)
T 2o0r_A 169 PHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHA--RHLPLAGFDGMAERTITISSAAKMFNCTGWKIGWAC 246 (411)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTC--CCCCGGGSTTTGGGEEEEEEHHHHTTCTTTCEEEEE
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCC--CCcChhhccCCCCCEEEEeechhhcCCccceEEEEe
Confidence 999999999999999999999999999999999999988652 223333322224689999999999999999999999
Q ss_pred EEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHh
Q psy14428 399 VLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEI 478 (583)
Q Consensus 399 ~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~ 478 (583)
+ + +++++.+.........+.+.+.|.++..+++..
T Consensus 247 ~--~-----~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~-------------------------------------- 281 (411)
T 2o0r_A 247 G--P-----AELIAGVRAAKQYLSYVGGAPFQPAVALALDTE-------------------------------------- 281 (411)
T ss_dssp C--C-----HHHHHHHHHHHHHHTSCCCTTHHHHHHHHHHHC--------------------------------------
T ss_pred e--C-----HHHHHHHHHHHhhccCCCChHHHHHHHHHHhCC--------------------------------------
Confidence 8 6 578888887766556677788888777666321
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCCh
Q psy14428 479 LSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSA 536 (583)
Q Consensus 479 l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~ 536 (583)
.+.++++++++.++++.+.+.|++.+ +....+++|+|.|..++.
T Consensus 282 ----------~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~g~~~~~~~~~ 325 (411)
T 2o0r_A 282 ----------DAWVAALRNSLRARRDRLAAGLTEIG----FAVHDSYGTYFLCADPRP 325 (411)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHHHHHHHT----CEECCCCBSSEEEEECGG
T ss_pred ----------hHHHHHHHHHHHHHHHHHHHHHHHcC----CEecCCCeeEEEEEecCC
Confidence 11245566777888888888888764 555667889999987753
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-34 Score=300.61 Aligned_cols=287 Identities=14% Similarity=0.186 Sum_probs=233.4
Q ss_pred CCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCch
Q psy14428 162 HPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGS 241 (583)
Q Consensus 162 ~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~ 241 (583)
+++.|+|+.|.++. + +++.+.+++.+.+... ..+|++..|.++||+++++++...+|+.+++++|++ |+|++
T Consensus 28 g~~~i~l~~~~~~~--~---~~~~v~~a~~~~~~~~-~~~y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~--~~g~~ 99 (370)
T 2z61_A 28 GKKVIHLEIGEPDF--N---TPKPIVDEGIKSLKEG-KTHYTDSRGILELREKISELYKDKYKADIIPDNIII--TGGSS 99 (370)
T ss_dssp TCCCEECCCCSCSS--C---CCHHHHHHHHHHHHTT-CCSCCCTTCCHHHHHHHHHHHHHHSSCCCCGGGEEE--ESSHH
T ss_pred CCCEEEccCCCCCC--C---CCHHHHHHHHHHHHcC-ccCCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEE--CCChH
Confidence 56789999999842 2 3578888887777543 467988899999999999999988888899999999 99999
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCC
Q psy14428 242 GSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHN 321 (583)
Q Consensus 242 ~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~N 321 (583)
+++.++ +..+..+||+|++++|+|..+...++..|++++.+| +|++.+++.+ .++++++++++|||
T Consensus 100 ~a~~~~---~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~--------~d~~~l~~~l---~~~~~~v~~~~p~n 165 (370)
T 2z61_A 100 LGLFFA---LSSIIDDGDEVLIQNPCYPCYKNFIRFLGAKPVFCD--------FTVESLEEAL---SDKTKAIIINSPSN 165 (370)
T ss_dssp HHHHHH---HHHHCCTTCEEEEESSCCTHHHHHHHHTTCEEEEEC--------SSHHHHHHHC---CSSEEEEEEESSCT
T ss_pred HHHHHH---HHHhcCCCCEEEEeCCCchhHHHHHHHcCCEEEEeC--------CCHHHHHHhc---ccCceEEEEcCCCC
Confidence 999985 444567799999999999999999999999998886 3788888877 45788899999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEc
Q psy14428 322 PTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLT 401 (583)
Q Consensus 322 PTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~ 401 (583)
|||.+++.+ |+++|+++|++||+||+|.++.+++. ..++..+.+..++++++.||||.+|++|+|+||+++
T Consensus 166 ptG~~~~~~----l~~~~~~~~~~li~De~~~~~~~~g~---~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~-- 236 (370)
T 2z61_A 166 PLGEVIDRE----IYEFAYENIPYIISDEIYNGLVYEGK---CYSAIEFDENLEKTILINGFSKLYAMTGWRIGYVIS-- 236 (370)
T ss_dssp TTCCCCCHH----HHHHHHHHCSEEEEECTTTTCBSSSC---CCCGGGTCTTCSSEEEEEESTTTTTCGGGCCEEEEC--
T ss_pred CcCcccCHH----HHHHHHHcCCEEEEEcchhhcccCCC---CcCHHHccCCCCcEEEEecChhccCCccceEEEEEE--
Confidence 999999988 89999999999999999999988651 223333222357899999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCC-hhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHhcC
Q psy14428 402 PTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSD-PKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEILS 480 (583)
Q Consensus 402 p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~l~ 480 (583)
+ +++++++.........+++.+.|.++..+++. .
T Consensus 237 ~-----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~---------------------------------------- 271 (370)
T 2z61_A 237 N-----DEIIEAILKLQQNLFISAPTISQYAALKAFEKET---------------------------------------- 271 (370)
T ss_dssp C-----HHHHHHHHHHHHHHTSSSCHHHHHHHGGGGSHHH----------------------------------------
T ss_pred C-----HHHHHHHHHHHhhcccCCCHHHHHHHHHHHhccC----------------------------------------
Confidence 7 57889888877666678888888887776653 1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCCh
Q psy14428 481 DPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSA 536 (583)
Q Consensus 481 ~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~ 536 (583)
.++++++++++.++++.+.+.|++.+ +....+++|+|.|..++.
T Consensus 272 --------~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~ 315 (370)
T 2z61_A 272 --------EREINSMIKEFDRRRRLVLKYVKDFG----WEVNNPIGAYYVFPNIGE 315 (370)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHTT----CBCCCCCBTTEECCBCSS
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHcC----CeecCCCcceEEEEecCC
Confidence 11245566777888888999888763 455667889999987753
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-35 Score=305.21 Aligned_cols=297 Identities=10% Similarity=0.033 Sum_probs=242.6
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
.+++.|||+.|.+.. + +++.+.+++.+.+... ..+|++ .| .+||+++++++.+.+++.+++++|++ |+|+
T Consensus 21 ~g~~~idl~~~~~~~--~---~~~~v~~a~~~~~~~~-~~~y~~-~~-~~lr~~la~~~~~~~~~~~~~~~i~~--t~g~ 90 (377)
T 3fdb_A 21 YGQGVLPLWVAESDF--S---TCPAVLQAITDAVQRE-AFGYQP-DG-SLLSQATAEFYADRYGYQARPEWIFP--IPDV 90 (377)
T ss_dssp SCTTSEECCSSCCCS--C---CCHHHHHHHHHHHHTT-CCSSCC-SS-CCHHHHHHHHHHHHHCCCCCGGGEEE--ESCH
T ss_pred cCCCeeeecccCCCC--C---CCHHHHHHHHHHHHcC-CCCCCC-CC-HHHHHHHHHHHHHHhCCCCCHHHEEE--eCCh
Confidence 356789999997642 2 5678888888777653 567988 88 99999999999988888899999999 9999
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCC
Q psy14428 241 SGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSH 320 (583)
Q Consensus 241 ~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~ 320 (583)
++++.++ +..+..+||+|+++.|+|..+...++..|++++.+|+ +++ +|++.+++.+. ++++++++++||
T Consensus 91 ~~a~~~~---~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~-~~~---~d~~~l~~~l~---~~~~~v~i~~p~ 160 (377)
T 3fdb_A 91 VRGLYIA---IDHFTPAQSKVIVPTPAYPPFFHLLSATQREGIFIDA-TGG---INLHDVEKGFQ---AGARSILLCNPY 160 (377)
T ss_dssp HHHHHHH---HHHHSCTTCCEEEEESCCTHHHHHHHHHTCCEEEEEC-TTS---CCHHHHHHHHH---TTCCEEEEESSB
T ss_pred HHHHHHH---HHHhcCCCCEEEEcCCCcHhHHHHHHHcCCEEEEccC-CCC---CCHHHHHHHhc---cCCCEEEEeCCC
Confidence 9999985 4456677999999999999999999999999999998 443 89999999985 357799999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCC-CCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEE
Q psy14428 321 NPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGD-FDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSV 399 (583)
Q Consensus 321 NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~-~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~ 399 (583)
||||.+++.+++++|+++|+++|++||+||+|.++.+++ . ...++..+. ..++++++.||||.+|++|+|+||+++
T Consensus 161 nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~--~~~~~~~~~-~~~~~i~~~s~sK~~g~~G~r~G~~~~ 237 (377)
T 3fdb_A 161 NPLGMVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQH--TVAAGVSDT-AASVCITITAPSKAWNIAGLKCAQIIF 237 (377)
T ss_dssp TTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCC--CCGGGSCHH-HHHHEEEEECSTTTTTCGGGCCEEEEC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCC--CcccHHHcc-CCCcEEEEEeChHhccCcchhheEEEe
Confidence 999999999999999999999999999999999998865 2 223333332 246899999999999999999999988
Q ss_pred EcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHhc
Q psy14428 400 LTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEIL 479 (583)
Q Consensus 400 ~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~l 479 (583)
++ +++++.+.........+++.++|.++...+++.
T Consensus 238 --~~----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~--------------------------------------- 272 (377)
T 3fdb_A 238 --SN----PSDAEHWQQLSPVIKDGASTLGLIAAEAAYRYG--------------------------------------- 272 (377)
T ss_dssp --CS----HHHHHHHHHSCHHHHCCCCHHHHHHHHHHHHHC---------------------------------------
T ss_pred --CC----HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhcc---------------------------------------
Confidence 55 478888887766667788999998887776431
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCCh
Q psy14428 480 SDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSA 536 (583)
Q Consensus 480 ~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~ 536 (583)
.++++++++++.++++.+.+.|++.. || +....++++++.|..++.
T Consensus 273 ---------~~~~~~~~~~~~~~~~~l~~~L~~~~-~~-~~~~~~~~~~~~~~~~~~ 318 (377)
T 3fdb_A 273 ---------TDFLNQEVAYLKNNHDFLLHEIPKRI-PG-AKITPMQATYLMWIDFRD 318 (377)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHHHS-TT-CEECCCSBCSEEEEECTT
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHhhC-CC-ceEecCCeeEEEEEECcc
Confidence 11245566677888888888888742 32 666778999999877655
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-34 Score=306.07 Aligned_cols=310 Identities=14% Similarity=0.134 Sum_probs=236.5
Q ss_pred CCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhC------CCCCCCCCCCeEEEe
Q psy14428 163 PKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYG------EDFPAFKDNRLAIVQ 236 (583)
Q Consensus 163 ~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~------~~g~~~~~~~I~i~~ 236 (583)
++.|+|+.|.++.. ....+++.+.+++.+.+......+|++..|..+||+++|+++.+ .+|+.+++++|++
T Consensus 33 ~~~i~l~~g~p~~~-~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~~~~v~~-- 109 (416)
T 1bw0_A 33 KPIIKLSVGDPTLD-KNLLTSAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVL-- 109 (416)
T ss_dssp SCCEECCCCCTTTT-SCSCCCHHHHHHHHHHHHTTCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEE--
T ss_pred CCeEEecCcCCCcc-cCCCCCHHHHHHHHHHhhCCccCCcCCCCCCHHHHHHHHHHHHhhhcccccCCCCCCcceEEE--
Confidence 56899999998531 11235688888888877654356798889999999999999982 3678888999999
Q ss_pred cCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCC-CCCCChhhHHHHHHcCCCCcEEEE
Q psy14428 237 GISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNK-TNGLDFAGMMEDIKAMPERSILFL 315 (583)
Q Consensus 237 t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~-~~g~d~~~l~~~l~~~~~~~~~i~ 315 (583)
|+|+++++.++ +..++.+||+|++++|+|..+...++..|++++.+|+ +++ ++++|++.+++.+ .+++++++
T Consensus 110 ~~g~~~al~~~---~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~-~~~~~~~~d~~~l~~~l---~~~~~~v~ 182 (416)
T 1bw0_A 110 CSGGSHGILMA---ITAICDAGDYALVPQPGFPHYETVCKAYGIGMHFYNC-RPENDWEADLDEIRRLK---DDKTKLLI 182 (416)
T ss_dssp ESHHHHHHHHH---HHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEE-EGGGTTEECHHHHHHHC---CTTEEEEE
T ss_pred eCChHHHHHHH---HHHhCCCCCEEEEcCCCcHhHHHHHHHcCcEEEEeec-CcccCCCCCHHHHHHHh---ccCCeEEE
Confidence 99999999985 4445677999999999999999999999999999998 443 4568999998877 45678899
Q ss_pred eCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCC--chHHHHHHHHhcCcEEEEecCcccccccCcc
Q psy14428 316 QTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDK--DAFSLRYFAKEVGQLCLAQSFSKNMGLYGER 393 (583)
Q Consensus 316 i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~--~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlR 393 (583)
+++||||||.+++.+++++|+++|+++|++||+||+|.++.+++... ...++..+ +..+++++++||||.|+++|+|
T Consensus 183 i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~-~~~~~~i~~~s~sK~~~~~Glr 261 (416)
T 1bw0_A 183 VTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADF-ETTVPRVILGGTAKNLVVPGWR 261 (416)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSS-CCSCCEEEEEESTTTTSCGGGC
T ss_pred EeCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHc-cCCCcEEEEecchhhCCCCCce
Confidence 99999999999999999999999999999999999999998865200 12233322 2345799999999999999999
Q ss_pred ceEEEEEcCCc-hhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchh
Q psy14428 394 VGTFSVLTPTS-DETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGA 472 (583)
Q Consensus 394 iG~lv~~~p~~-~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~ 472 (583)
+||+++ +++ +..+.+.+.+.+... ...+++.+.|.++..+++...
T Consensus 262 ~G~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~------------------------------- 307 (416)
T 1bw0_A 262 LGWLLY--VDPHGNGPSFLEGLKRVGM-LVCGPCTVVQAALGEALLNTP------------------------------- 307 (416)
T ss_dssp CEEEEE--ECTTCSCHHHHHHHHHHHH-HHTCSCHHHHHHHHHHHHSSC-------------------------------
T ss_pred EEEEEe--eCchhhHHHHHHHHHHHhc-cccCCCcHHHHHHHHHHhccc-------------------------------
Confidence 999999 653 222234444433321 245778888888888775310
Q ss_pred hHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCCh
Q psy14428 473 RIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSA 536 (583)
Q Consensus 473 ~i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~ 536 (583)
.+.++++++++.+.++.+.+.|+++ || +....+++|+|.|..++.
T Consensus 308 ----------------~~~~~~~~~~~~~~~~~l~~~L~~~--~g-~~~~~~~~~~~~~~~~~~ 352 (416)
T 1bw0_A 308 ----------------QEHLDQIVAKIEESAMYLYNHIGEC--IG-LAPTMPRGAMYLMSRIDL 352 (416)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHHHHHHTTS--TT-EEECCCCBTTEEEEEECG
T ss_pred ----------------HHHHHHHHHHHHHHHHHHHHHHHhC--CC-CcccCCCeeEEEEEeCCH
Confidence 0123445566677888888888764 33 555567889999976653
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-35 Score=314.87 Aligned_cols=302 Identities=16% Similarity=0.145 Sum_probs=226.0
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccC----CCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEe
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKN----LDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQ 236 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~----~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~ 236 (583)
.+++.|+|+.|.|+.. |.+.+.+.+++.++..+. ..++|++..|.++||+++|+++.+.+|+.+++++|++
T Consensus 29 ~~~~~i~l~~g~p~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~-- 103 (417)
T 3g7q_A 29 RTPGAIMLGGGNPAHI---PAMQDYFQTLLTDMVESGKAADALCNYDGPQGKTALLNALAVLLRETLGWDIEPQNIAL-- 103 (417)
T ss_dssp ---CCEECSCCCCCCC---HHHHHHHHHHHHHHHHHTHHHHHHHSTTCTTSHHHHHHHHHHHHHHHHCCCCCGGGEEE--
T ss_pred cCCCceEecCcCCCCC---ChHHHHHHHHHHHHhhCCcccceeeccCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEE--
Confidence 5578999999988631 223367777777766442 1257999999999999999999888899999999999
Q ss_pred cCCchhHHHHHHHHHHHhCCCCC-----EEEEc-CCCChhhHHHHhh------cCCeEEEEecccCCCCCCChhhHHHHH
Q psy14428 237 GISGSGSLRVGTAFLERFYPGVK-----TVYFP-TPTWNGHVRFCTD------SRLNVGAYRYFDNKTNGLDFAGMMEDI 304 (583)
Q Consensus 237 t~G~~~al~l~~~~l~~~~~~gd-----~Vlv~-~P~y~~~~~~~~~------~G~~~~~v~~~d~~~~g~d~~~l~~~l 304 (583)
|+|+++|+.++ +..+..+|| .|+++ +|+|..+...+.. .+..+..++. +..++++|++.++ +
T Consensus 104 t~G~t~al~~~---~~~l~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~l~--~ 177 (417)
T 3g7q_A 104 TNGSQSAFFYL---FNLFAGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVSARPNIELLPE-GQFKYHVDFEHLH--I 177 (417)
T ss_dssp ESCHHHHHHHH---HHHHSBC----CCBEEEESSCCCHHHHHC-----CCEEECCCEEEEEGG-GEEEEECCGGGCC--C
T ss_pred eCCcHHHHHHH---HHHHcCCCccCCcceEEEeCCCccccchhhccchhhhccccCcccccCC-cccccccCHHHhc--c
Confidence 99999999995 445666677 89997 9999999876532 2344555544 2123567888876 3
Q ss_pred HcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCc
Q psy14428 305 KAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFS 384 (583)
Q Consensus 305 ~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~S 384 (583)
.++++++++++||||||.+++.+++++|+++|+++|++||+||+|.++.......... .+..+++|++.|||
T Consensus 178 ---~~~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~~~~~~~~~~~-----~~~~~~~i~~~s~s 249 (417)
T 3g7q_A 178 ---GEETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPFPGIIFSEAR-----PLWNPNIILCMSLS 249 (417)
T ss_dssp ---CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCCC-----CCCCTTEEEEEESG
T ss_pred ---ccCceEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCccccccccccccc-----cCCCCCEEEEEech
Confidence 5788999999999999999999999999999999999999999998743221000000 12357899999999
Q ss_pred ccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhcc
Q psy14428 385 KNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFY 464 (583)
Q Consensus 385 K~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~ 464 (583)
| ++++|+|+||+++ + +++++++.........+++.+.|.++..++++..+.
T Consensus 250 K-~~~~G~r~G~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------------------- 300 (417)
T 3g7q_A 250 K-LGLPGSRCGIIIA--N-----DKTITAIANMNGIISLAPGGMGPAMMCEMIKRNDLL--------------------- 300 (417)
T ss_dssp G-GTCTTSCCEEEEC--C-----HHHHHHHHHHHHHHCCCCCSHHHHHHHHHHHTTCHH---------------------
T ss_pred h-ccCCCcceEEEEe--C-----HHHHHHHHHhhcceeeCCCcHHHHHHHHHHcCcchH---------------------
Confidence 9 6889999999998 6 689999999888888889999999999888764322
Q ss_pred CCCccchhhHHHHhcCChhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCC-CcccccccccceeecCCCh
Q psy14428 465 SNPPIHGARIVTEILSDPKLKAQWFEECKG-MSNRISSIREELKSKILDKGSKK-NWDHITNQKGMFCYTGLSA 536 (583)
Q Consensus 465 ~~~p~~g~~i~~~~l~~~~~~~~~~~~l~~-~~~~~~~~r~~l~~~L~~~~~pg-~~~~~~~~~g~f~~~~l~~ 536 (583)
+++++ +++++.++++.+.+.|++.. ++ .+.+..+++|+|.|..++.
T Consensus 301 -------------------------~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~~~~~~~~g~~~~~~~~~ 348 (417)
T 3g7q_A 301 -------------------------RLSETVIKPFYYQRVQQTIAIIRRYL-SEERCLIHKPEGAIFLWLWFKD 348 (417)
T ss_dssp -------------------------HHHHHTHHHHHHHHHHHHHHHHHHHC-CTTTCEEECCCBSSEEEEECTT
T ss_pred -------------------------HHHHHHHHHHHHHHHHHHHHHHHHhc-ccCCceeeCCCcceEEEEEcCC
Confidence 22333 55666777888888887643 22 3556678999999987654
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-34 Score=306.56 Aligned_cols=297 Identities=20% Similarity=0.194 Sum_probs=237.4
Q ss_pred CCCccccCCccccCCCCCCCCChHHHHHHHHHhccC--CCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCC
Q psy14428 162 HPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKN--LDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGIS 239 (583)
Q Consensus 162 ~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~--~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G 239 (583)
+++.|+|+.|.++.. ..+++.+.+++.+.++.. ...+|++..|..+||++++++++ +++++|++ |+|
T Consensus 31 ~~~~i~l~~g~~~~~---~~~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~g------~~~~~v~~--~~g 99 (397)
T 2zyj_A 31 RPGILSFAGGLPAPE---LFPKEEAAEAAARILREKGEVALQYSPTEGYAPLRAFVAEWIG------VRPEEVLI--TTG 99 (397)
T ss_dssp STTCEEESSCCCCGG---GCCHHHHHHHHHHHHHHHHHHHTSCCCTTCCHHHHHHHHHHHT------SCGGGEEE--ESH
T ss_pred CCCceecCCCCCCch---hCCHHHHHHHHHHHHHhcchhhhCCCCCCCCHHHHHHHHHHhC------CChhhEEE--ecc
Confidence 457899999887532 224578888877766531 24679888999999999999993 56789999 999
Q ss_pred chhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEE-EeCC
Q psy14428 240 GSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILF-LQTS 318 (583)
Q Consensus 240 ~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i-~i~~ 318 (583)
+++++.++ +..+..+||+|++++|+|..+...++..|++++.+|+ ++ .++|++.+++.+.+ .+++++ ++++
T Consensus 100 ~~~al~~~---~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~-~~--~~~d~~~l~~~l~~--~~~~~v~~~~~ 171 (397)
T 2zyj_A 100 SQQALDLV---GKVFLDEGSPVLLEAPSYMGAIQAFRLQGPRFLTVPA-GE--EGPDLDALEEVLKR--ERPRFLYLIPS 171 (397)
T ss_dssp HHHHHHHH---HHHHCCTTCEEEEEESCCHHHHHHHHTTCCEEEEEEE-ET--TEECHHHHHHHHHH--CCCSCEEECCB
T ss_pred HHHHHHHH---HHHhCCCCCEEEEeCCCcHHHHHHHHHcCCEEEecCc-CC--CCCCHHHHHHHHhh--cCCeEEEECCC
Confidence 99999985 4445677999999999999999999999999999998 54 35899999998864 244554 6899
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhc---CcEEEEecCcccccccCccce
Q psy14428 319 SHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEV---GQLCLAQSFSKNMGLYGERVG 395 (583)
Q Consensus 319 p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~---~~vi~i~S~SK~~~l~GlRiG 395 (583)
||||||.+++.+++++|+++|+++|++||+||+|.++.+++. ...++..+ +.. +++++++||||.++ +|+|+|
T Consensus 172 ~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~-~~~~~~~~~i~~~s~sK~~~-~G~r~G 247 (397)
T 2zyj_A 172 FQNPTGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEA--RLPSLFEL-AREAGYPGVIYLGSFSKVLS-PGLRVA 247 (397)
T ss_dssp SCTTTCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSC--CCCCHHHH-HHHHTCCCEEEEEESTTTTC-GGGCCE
T ss_pred CcCCCCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCC--CCCchhhh-CcccCCCeEEEEeccccccc-ccceeE
Confidence 999999999999999999999999999999999999988652 23345554 233 78999999999999 999999
Q ss_pred EEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHH
Q psy14428 396 TFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIV 475 (583)
Q Consensus 396 ~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~ 475 (583)
|+++ + +++++++.........+.+.+.|.++..++++..
T Consensus 248 ~~~~--~-----~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~---------------------------------- 286 (397)
T 2zyj_A 248 FAVA--H-----PEALQKLVQAKQGADLHTPMLNQMLVHELLKEGF---------------------------------- 286 (397)
T ss_dssp EEEC--C-----HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHTTTH----------------------------------
T ss_pred EEec--C-----HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhCC----------------------------------
Confidence 9999 6 5789988887666666779999999888887531
Q ss_pred HHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCCh
Q psy14428 476 TEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSA 536 (583)
Q Consensus 476 ~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~ 536 (583)
| ++++++++++.++++.+.+.|++.. |+++....+++|+|.|..++.
T Consensus 287 ------------~-~~~~~~~~~~~~~~~~l~~~L~~~~-~~g~~~~~~~~g~~~~~~~~~ 333 (397)
T 2zyj_A 287 ------------S-ERLERVRRVYREKAQAMLHALDREV-PKEVRYTRPKGGMFVWMELPK 333 (397)
T ss_dssp ------------H-HHHHHHHHHHHHHHHHHHHHHHHHS-CTTSEECCCSBSSEEEEECST
T ss_pred ------------H-HHHHHHHHHHHHHHHHHHHHHHHHC-CCCeEEccCCccEEEEEEcCC
Confidence 2 3355666777888888888888752 323555567889999987753
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-35 Score=311.35 Aligned_cols=304 Identities=13% Similarity=0.067 Sum_probs=231.3
Q ss_pred CCCccccCCccccCCCCCCCCChHHHHHHH--HHhccC-CCCCC-CCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEec
Q psy14428 162 HPKKMNLGVGAYRGEDGKPYVLPSVKEAER--RIYEKN-LDHEY-ANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQG 237 (583)
Q Consensus 162 ~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~--~~~~~~-~~~~Y-~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t 237 (583)
.+..|||+.|.|++... | +++.+.+++. +..... ...+| ++..|.++||+++|+++. +++++|++ |
T Consensus 24 ~~~~i~l~~g~p~~~~~-~-~~~~v~~a~~~~~~~~~~~~~~~Yp~~~~g~~~lr~~ia~~~~------~~~~~i~~--t 93 (423)
T 3ez1_A 24 RGLNLNMQRGQPADADF-D-LSNGLLTVLGAEDVRMDGLDLRNYPGGVAGLPSARALFAGYLD------VKAENVLV--W 93 (423)
T ss_dssp HTCCEESCCCCCCHHHH-H-TTGGGGGSCCGGGCEETTEETTSSCSCTTCCHHHHHHHHHHTT------SCGGGEEE--C
T ss_pred CCceEecCCCCCChHhC-C-CcHHHHHHHhhhHHhhcchhhhCCCCCCCChHHHHHHHHHHhC------CChhhEEE--e
Confidence 35679999999863211 1 3346666653 443322 24789 899999999999999983 67889999 9
Q ss_pred CCchhHHH--HHHHHHHHhCC--C---------CCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHH
Q psy14428 238 ISGSGSLR--VGTAFLERFYP--G---------VKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDI 304 (583)
Q Consensus 238 ~G~~~al~--l~~~~l~~~~~--~---------gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l 304 (583)
+|+++++. ++ +..++. + ||+|++++|+|..+...++..|++++.+|+ ++ .++|++.+++.+
T Consensus 94 ~G~~~al~~~~~---~~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~-~~--~g~d~~~l~~~l 167 (423)
T 3ez1_A 94 NNSSLELQGLVL---TFALLHGVRGSTGPWLSQTPKMIVTVPGYDRHFLLLQTLGFELLTVDM-QS--DGPDVDAVERLA 167 (423)
T ss_dssp SSCHHHHHHHHH---HHHHHTCCTTCSSCGGGGCCEEEEEESCCHHHHHHHHHHTCEEEEEEE-ET--TEECHHHHHHHH
T ss_pred CCcHHHHHHHHH---HHHHhccCCCccccccCCCCEEEEcCCCcHHHHHHHHHcCCEEEeccC-CC--CCCCHHHHHHHH
Confidence 99999997 64 333333 4 599999999999999999999999999999 54 379999999988
Q ss_pred HcCCCCcEEEE-eCCCCCCCCCCCCHHHHHHHHHHH-HhcCeEEEEeccCCCCCCCC-CCCchHHHHHH---HHhcCcEE
Q psy14428 305 KAMPERSILFL-QTSSHNPTGVDLSEDQWRQLAVVV-KQRHLYPFFDMAYLGLTSGD-FDKDAFSLRYF---AKEVGQLC 378 (583)
Q Consensus 305 ~~~~~~~~~i~-i~~p~NPTG~~~s~~~~~~l~~~a-~~~~i~iI~De~Y~~l~~~~-~~~~~~~~~~~---~~~~~~vi 378 (583)
++ .+++++++ +|+||||||.+++.+++++|+++| +++|++||+||+|.++.+.+ ......++..+ .+..+++|
T Consensus 168 ~~-~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 246 (423)
T 3ez1_A 168 GT-DPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAF 246 (423)
T ss_dssp HS-CTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHTCTTSEE
T ss_pred hh-CCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCCCCCCcchhhhhhccCCCCeEE
Confidence 53 34566664 679999999999999999999999 99999999999999765543 11122234333 24567999
Q ss_pred EEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCC--hhhhhhhhhHHHHHHHH
Q psy14428 379 LAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSD--PKLKAQCDETERIMSQL 456 (583)
Q Consensus 379 ~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~l 456 (583)
+++||||+ +++|+|+||+++ + +++++.+.........+++.+.|.++..++++ +.
T Consensus 247 ~~~S~sK~-~~~G~r~G~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~--------------- 303 (423)
T 3ez1_A 247 VFASTSKI-TFAGAGLGFVAS--S-----EDNIRWLSKYLGAQSIGPNKVEQARHVKFLTEYPGG--------------- 303 (423)
T ss_dssp EEEESTTT-SCSSSSCEEEEE--C-----HHHHHHHHHHHHHSCSCCCHHHHHHHHHHHHHSTTH---------------
T ss_pred EEeCchhh-ccCCcceEEEEe--C-----HHHHHHHHHHHhhhccCCCHHHHHHHHHHHHhccch---------------
Confidence 99999999 579999999999 7 58999999988888889999999999888764 22
Q ss_pred HHHHhhccCCCccchhhHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCC-CcccccccccceeecCC
Q psy14428 457 KILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDK-GSKK-NWDHITNQKGMFCYTGL 534 (583)
Q Consensus 457 ~~~~r~~~~~~p~~g~~i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~-~~pg-~~~~~~~~~g~f~~~~l 534 (583)
+.++++++++.+.++++.+.+.|.+. ..-| .+.+..+++|+|.|..+
T Consensus 304 -------------------------------~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~p~~g~~~~~~~ 352 (423)
T 3ez1_A 304 -------------------------------LEGLMRDHAAIIAPKFRAVDEVLRAELGEGGEYATWTLPKGGYFISLDT 352 (423)
T ss_dssp -------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSEEECCCSBSSCEEEEE
T ss_pred -------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCceEEeCCCccEEEEEEC
Confidence 22334555566666666666666552 2112 24556789999999877
Q ss_pred Ch
Q psy14428 535 SA 536 (583)
Q Consensus 535 ~~ 536 (583)
+.
T Consensus 353 ~~ 354 (423)
T 3ez1_A 353 AE 354 (423)
T ss_dssp SS
T ss_pred CC
Confidence 54
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-34 Score=300.00 Aligned_cols=301 Identities=11% Similarity=0.074 Sum_probs=235.8
Q ss_pred CCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchh
Q psy14428 163 PKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSG 242 (583)
Q Consensus 163 ~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~ 242 (583)
++.++|+.+.++ .+ +++.+.+++.+.+... ..+|++. .++||+++++++.+.+|+.+++++|++ |+|+++
T Consensus 31 ~~~i~l~~~~~~--~~---~~~~v~~a~~~~~~~~-~~~y~~~--~~~l~~~la~~l~~~~g~~~~~~~v~~--t~g~~~ 100 (399)
T 1c7n_A 31 NEVVPLSVADME--FK---NPPELIEGLKKYLDET-VLGYTGP--TEEYKKTVKKWMKDRHQWDIQTDWIIN--TAGVVP 100 (399)
T ss_dssp TTCCCCCSSSCS--SC---CCHHHHHHHHHHHHHC-CCSSBCC--CHHHHHHHHHHHHHHHCCCCCGGGEEE--ESSHHH
T ss_pred CCceeeeecCCC--CC---CCHHHHHHHHHHHhcC-CCCCCCC--cHHHHHHHHHHHHHHhCCCCChhhEEE--cCCHHH
Confidence 478999998864 22 5678888888777542 4678764 899999999999877777788999999 999999
Q ss_pred HHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCC-CCCCChhhHHHHHHcCCCCcEEEEeCCCCC
Q psy14428 243 SLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNK-TNGLDFAGMMEDIKAMPERSILFLQTSSHN 321 (583)
Q Consensus 243 al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~-~~g~d~~~l~~~l~~~~~~~~~i~i~~p~N 321 (583)
++.++ +..+..+||+|++++|+|..+...++..|++++.+|+.+++ ++.+|++.+++.+.+ ++++++++++|||
T Consensus 101 a~~~~---~~~l~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~--~~~~~v~~~~~~n 175 (399)
T 1c7n_A 101 AVFNA---VREFTKPGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKD--KNNKALLFCSPHN 175 (399)
T ss_dssp HHHHH---HHHHCCTTCEEEECSSCCTHHHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTC--TTEEEEEEESSBT
T ss_pred HHHHH---HHHhcCCCCEEEEcCCCcHhHHHHHHHcCCEEEecccccCCCCEEEcHHHHHHHhcc--CCCcEEEEcCCCC
Confidence 99985 44566779999999999999999999999999999983122 134899999998842 5678888999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHH-hcCcEEEEecCcccccccCccceEEEEE
Q psy14428 322 PTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAK-EVGQLCLAQSFSKNMGLYGERVGTFSVL 400 (583)
Q Consensus 322 PTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~-~~~~vi~i~S~SK~~~l~GlRiG~lv~~ 400 (583)
|||.+++.+++++|+++|++++++||+||+|.++.+++. ...++..+.. ..++++++.||||.+|++|+|+||+++
T Consensus 176 ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~- 252 (399)
T 1c7n_A 176 PVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGY--EHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIII- 252 (399)
T ss_dssp TTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTC--CCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEEC-
T ss_pred CCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCC--CcccHHHcCccccCcEEEEEeChhhccccchheEEEEE-
Confidence 999999999999999999999999999999999988652 2223333211 147899999999999999999999999
Q ss_pred cCCchhHHHHHHHHHHHHhccc-cCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHhc
Q psy14428 401 TPTSDETERIMSQLKILIRGFY-SNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEIL 479 (583)
Q Consensus 401 ~p~~~~~~~li~~l~~~~~~~~-~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~l 479 (583)
++ +++++++........ .+++.+.|.++..++++.
T Consensus 253 -~~----~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~~--------------------------------------- 288 (399)
T 1c7n_A 253 -KN----PDIRERFTKSRDATSGMPFTTLGYKACEICYKEC--------------------------------------- 288 (399)
T ss_dssp -CC----HHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHC---------------------------------------
T ss_pred -CC----HHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhCC---------------------------------------
Confidence 64 368888887665553 367888888887776421
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCCh
Q psy14428 480 SDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSA 536 (583)
Q Consensus 480 ~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~ 536 (583)
.+.++++++++.++++.+.+.|++. .|| +....++++++.|..++.
T Consensus 289 ---------~~~~~~~~~~~~~~~~~l~~~L~~~-~~~-~~~~~~~~~~~~~~~~~~ 334 (399)
T 1c7n_A 289 ---------GKWLDGCIKVIDKNQRIVKDFFEVN-HPE-IKAPLIEGTYLQWIDFRA 334 (399)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHHH-CTT-SBCCCCSBSSEEEEECGG
T ss_pred ---------hHHHHHHHHHHHHHHHHHHHHHHhh-CCC-CeEecCCceEEEEEEccc
Confidence 0124455666778888888888773 133 556678889999877653
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-34 Score=299.65 Aligned_cols=299 Identities=10% Similarity=0.093 Sum_probs=237.5
Q ss_pred CCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCch
Q psy14428 162 HPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGS 241 (583)
Q Consensus 162 ~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~ 241 (583)
.++.++|+.|.+... +++.+.+++.+.+.+. ...|++ +..++++++++++.+.+|+.+++++|++ |+|++
T Consensus 31 ~~~~i~l~~~~~~~~-----~~~~v~~a~~~~~~~~-~~~y~~--~~~~~~~~l~~~l~~~~g~~~~~~~v~~--~~g~~ 100 (391)
T 4dq6_A 31 TNDLLPMWVADMDFK-----AAPCIIDSLKNRLEQE-IYGYTT--RPDSYNESIVNWLYRRHNWKIKSEWLIY--SPGVI 100 (391)
T ss_dssp CSCSEECCSSSCSSC-----CCHHHHHHHHHHHTTC-CCCCBC--CCHHHHHHHHHHHHHHHCCCCCGGGEEE--ESCHH
T ss_pred CCCceeccccCCCCC-----CCHHHHHHHHHHHhCC-CCCCCC--CCHHHHHHHHHHHHHHhCCCCcHHHeEE--cCChH
Confidence 467899999976421 5688989888877643 456655 6799999999999988888888999999 99999
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEeccc---CCCCCCChhhHHHHHHcCCCCcEEEEeCC
Q psy14428 242 GSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFD---NKTNGLDFAGMMEDIKAMPERSILFLQTS 318 (583)
Q Consensus 242 ~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d---~~~~g~d~~~l~~~l~~~~~~~~~i~i~~ 318 (583)
+++.++ +..+..+||+|++++|+|..+...++..|++++.+|+ + +.++.+|++.+++.+ .+ ++++++++
T Consensus 101 ~a~~~~---~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~d~~~l~~~l---~~-~~~v~i~~ 172 (391)
T 4dq6_A 101 PAISLL---INELTKANDKIMIQEPVYSPFNSVVKNNNRELIISPL-QKLENGNYIMDYEDIENKI---KD-VKLFILCN 172 (391)
T ss_dssp HHHHHH---HHHHSCTTCEEEECSSCCTHHHHHHHHTTCEEEECCC-EECTTSCEECCHHHHHHHC---TT-EEEEEEES
T ss_pred HHHHHH---HHHhCCCCCEEEEcCCCCHHHHHHHHHcCCeEEeeee-eecCCCceEeeHHHHHHHh---hc-CCEEEEEC
Confidence 999985 4456677999999999999999999999999999998 4 223458999999887 34 88999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHH-HhcCcEEEEecCcccccccCccceEE
Q psy14428 319 SHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFA-KEVGQLCLAQSFSKNMGLYGERVGTF 397 (583)
Q Consensus 319 p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~-~~~~~vi~i~S~SK~~~l~GlRiG~l 397 (583)
||||||.+++.+++++|+++|+++|++||+||+|.++.+++. ...++..+. +..++++++.||||.+|++|+|+||+
T Consensus 173 p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~ 250 (391)
T 4dq6_A 173 PHNPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIILKKH--KHIPMASISKEFEKNTITCMAPTKTFNIAGLQSSYV 250 (391)
T ss_dssp SBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTC--CCCCGGGSCHHHHHTEEEEECSHHHHTCGGGCCEEE
T ss_pred CCCCCCcCcCHHHHHHHHHHHHHcCCEEEeeccccccccCCC--CccCHHHcCccccCcEEEEEechhhccCcccceEEE
Confidence 999999999999999999999999999999999999988752 222333321 22468999999999999999999999
Q ss_pred EEEcCCchhHHHHHHHHHHHHhcc-ccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHH
Q psy14428 398 SVLTPTSDETERIMSQLKILIRGF-YSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVT 476 (583)
Q Consensus 398 v~~~p~~~~~~~li~~l~~~~~~~-~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~ 476 (583)
++ ++ +++++.+....... ..+++.+.|.++...+++.
T Consensus 251 ~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~------------------------------------ 288 (391)
T 4dq6_A 251 VL--PD----EKDYKLLDDAFTRIDIKRNNCFSLVATEASYNNG------------------------------------ 288 (391)
T ss_dssp EC--CS----HHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHC------------------------------------
T ss_pred Ee--CC----HHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhch------------------------------------
Confidence 98 64 37888888765433 4577888888877766421
Q ss_pred HhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCCh
Q psy14428 477 EILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSA 536 (583)
Q Consensus 477 ~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~ 536 (583)
. +.++++++++.++++.+.+.|++.. || +....++++++.|..++.
T Consensus 289 ---------~---~~~~~~~~~~~~~~~~l~~~l~~~~-~~-~~~~~~~~~~~~~~~~~~ 334 (391)
T 4dq6_A 289 ---------E---SWLESFLEYLESNIDFAIKYINENM-PK-LKVRKPEGTYLLWVDFSA 334 (391)
T ss_dssp ---------H---HHHHHHHHHHHHHHHHHHHHHHHHC-TT-SEECCCSBSSEEEEECGG
T ss_pred ---------H---HHHHHHHHHHHHHHHHHHHHHHhhC-CC-CEecCCCccEEEEEEhhh
Confidence 0 1145556677788888888888742 32 566778999999887754
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-33 Score=303.03 Aligned_cols=293 Identities=16% Similarity=0.172 Sum_probs=228.2
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhcc----CCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEe
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEK----NLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQ 236 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~----~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~ 236 (583)
.+++.|+|+.|+++.. +++.+.+++.+.... ....+|++..|.++||+++++|+.+ ++.+++++|++
T Consensus 54 ~~~~~i~l~~~~~~~~-----~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~--~~~~~~~~i~~-- 124 (432)
T 3ei9_A 54 PDAQVISLGIGDTTEP-----IPEVITSAMAKKAHELSTIEGYSGYGAEQGAKPLRAAIAKTFYG--GLGIGDDDVFV-- 124 (432)
T ss_dssp TTCCCEECSSCCCCSC-----CCHHHHHHHHHHHHHTTSTTTCCCCCCTTCCHHHHHHHHHHHHT--TTTCCGGGEEE--
T ss_pred CCCCeEEccCCCCCCC-----CCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHc--cCCCCcceEEE--
Confidence 3457899999988622 457788887776653 1245798899999999999999983 66788999999
Q ss_pred cCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCC------------eEEEEecccCCCCCCChhhHHHHH
Q psy14428 237 GISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRL------------NVGAYRYFDNKTNGLDFAGMMEDI 304 (583)
Q Consensus 237 t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~------------~~~~v~~~d~~~~g~d~~~l~~~l 304 (583)
|+|+++++.++ . .+..+||.|++++|+|..+...++..|. +++.+++.++.++..|++.
T Consensus 125 t~G~~~al~~l---~-~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----- 195 (432)
T 3ei9_A 125 SDGAKCDISRL---Q-VMFGSNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFPDLST----- 195 (432)
T ss_dssp ESCHHHHHHHH---H-HHHCTTCCEEEEESCCTHHHHHHHHHTCSCCEETTTTEETTCEEEECCGGGTTSCCGGG-----
T ss_pred CCChHHHHHHH---H-HHcCCCCEEEEeCCCCHHHHHHHHHcCCcccccccccccCceEEeccCcccCCcCChhh-----
Confidence 99999999874 2 2335699999999999999999988884 6788888322222333221
Q ss_pred HcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCc
Q psy14428 305 KAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFS 384 (583)
Q Consensus 305 ~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~S 384 (583)
.++++++++++||||||.+++.+++++|+++|+++|++||+||+|.++.+++. ..++..+....+++|+++|||
T Consensus 196 ---~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~---~~~~~~~~~~~~~~i~~~S~S 269 (432)
T 3ei9_A 196 ---VGRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDN---PRSIFEIPGAEEVAMETASFS 269 (432)
T ss_dssp ---CCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSC---CSSGGGSTTGGGTEEEEEESH
T ss_pred ---CCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEccchHhhccCCC---CCChhhcCCCCCeEEEEecch
Confidence 35678888899999999999999999999999999999999999999988752 223333333356899999999
Q ss_pred ccccccCccceEEEEEcCCchhHHHH--------HHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHH
Q psy14428 385 KNMGLYGERVGTFSVLTPTSDETERI--------MSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQL 456 (583)
Q Consensus 385 K~~~l~GlRiG~lv~~~p~~~~~~~l--------i~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l 456 (583)
|+||++|+|+||+++ ++ ++ ++.+.+.......+++.++|.++..++.+..
T Consensus 270 K~~g~~G~r~G~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--------------- 327 (432)
T 3ei9_A 270 NYAGFTGVRLGWTVI--PK-----KLLYSDGFPVAKDFNRIICTCFNGASNISQAGALACLTPEG--------------- 327 (432)
T ss_dssp HHHCTTTTCCEEEEC--CT-----TCBCTTSCBHHHHHHHHHHHSCCCSCHHHHHHHHHHSSHHH---------------
T ss_pred hccCCcccceEEEEE--Ch-----HHhhcchHHHHHHHHHHhccccCCCCHHHHHHHHHHHhccc---------------
Confidence 999999999999999 64 34 6777777666777889999998888876411
Q ss_pred HHHHhhccCCCccchhhHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCC
Q psy14428 457 KILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLS 535 (583)
Q Consensus 457 ~~~~r~~~~~~p~~g~~i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~ 535 (583)
.++++++++++.++++.+.+.|++.+ +....+++|+|.|..++
T Consensus 328 --------------------------------~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~ 370 (432)
T 3ei9_A 328 --------------------------------LEAMHKVIGFYKENTNIIIDTFTSLG----YDVYGGKNAPYVWVHFP 370 (432)
T ss_dssp --------------------------------HHHHHHHHHHHHHHHHHHHHHHHHTT----CCEEECSSSSEEEEECT
T ss_pred --------------------------------HHHHHHHHHHHHHHHHHHHHHHHHCC----ceecCCCcceEEEEECC
Confidence 01255667777888999999998864 55566778999998876
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=297.88 Aligned_cols=301 Identities=11% Similarity=0.102 Sum_probs=238.7
Q ss_pred CCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCch
Q psy14428 162 HPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGS 241 (583)
Q Consensus 162 ~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~ 241 (583)
+.+.|||+.|.++.. +++.+.+++.+.+... ..+|++. ..++|+++++++.+.+|+++++++|++ |+|++
T Consensus 26 g~~~i~~~~~~~~~~-----~~~~v~~a~~~~~~~~-~~~y~~~--~~~l~~~la~~l~~~~g~~~~~~~i~~--~~g~~ 95 (391)
T 3dzz_A 26 KEKELPMWIAEMDFK-----IAPEIMASMEEKLKVA-AFGYESV--PAEYYKAVADWEEIEHRARPKEDWCVF--ASGVV 95 (391)
T ss_dssp CTTCEECCSSCCSSC-----CCHHHHHHHHHHHTTC-CCCCBCC--CHHHHHHHHHHHHHHHSCCCCGGGEEE--ESCHH
T ss_pred CCCceeccccCCCCC-----CCHHHHHHHHHHHhcC-cCCCCCC--CHHHHHHHHHHHHHHhCCCCCHHHEEE--CCCHH
Confidence 457899999976422 5688888888877653 5667765 799999999999988888889999999 99999
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEeccc--CCCCCCChhhHHHHHHcCCCCcEEEEeCCC
Q psy14428 242 GSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFD--NKTNGLDFAGMMEDIKAMPERSILFLQTSS 319 (583)
Q Consensus 242 ~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d--~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p 319 (583)
+++.++ +..+..+||+|++++|+|..+...++..|++++.+|+ + ..++.+|++.+++.+.+ ++++++++++|
T Consensus 96 ~a~~~~---~~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~d~~~l~~~l~~--~~~~~v~i~~p 169 (391)
T 3dzz_A 96 PAISAM---VRQFTSPGDQILVQEPVYNMFYSVIEGNGRRVISSDL-IYENSKYSVNWADLEEKLAT--PSVRMMVFCNP 169 (391)
T ss_dssp HHHHHH---HHHHSCTTCEEEECSSCCHHHHHHHHHTTCEEEECCC-EEETTEEECCHHHHHHHHTS--TTEEEEEEESS
T ss_pred HHHHHH---HHHhCCCCCeEEECCCCcHHHHHHHHHcCCEEEEeee-eecCCceeecHHHHHHHHhc--cCceEEEEECC
Confidence 999985 4445677999999999999999999999999999998 4 22234899999999842 57889999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHH-hcCcEEEEecCcccccccCccceEEE
Q psy14428 320 HNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAK-EVGQLCLAQSFSKNMGLYGERVGTFS 398 (583)
Q Consensus 320 ~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~-~~~~vi~i~S~SK~~~l~GlRiG~lv 398 (583)
|||||.+++.+++++|+++|+++|++||+||+|.++.+.+. ...++..+.. ..++++++.||||.+|++|+|+||++
T Consensus 170 ~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~~~~~d~~i~~~s~sK~~g~~G~r~G~~~ 247 (391)
T 3dzz_A 170 HNPIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDE--DITPAFTVDWDAKNWVVSLISPSKTFNLAALHAACAI 247 (391)
T ss_dssp BTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSC--CCCCGGGSCTTTGGGEEEEECSHHHHTCTTTCCEEEE
T ss_pred CCCCCcccCHHHHHHHHHHHHHCCCEEEEecccccccCCCC--CceehhhcCccccCcEEEEEeChhhccccchhheEEE
Confidence 99999999999999999999999999999999999988752 2333333221 14689999999999999999999999
Q ss_pred EEcCCchhHHHHHHHHHHHHhc-cccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHH
Q psy14428 399 VLTPTSDETERIMSQLKILIRG-FYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTE 477 (583)
Q Consensus 399 ~~~p~~~~~~~li~~l~~~~~~-~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~ 477 (583)
+ ++ +++++.+...... ...+++.+.|.++...+++.
T Consensus 248 ~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~------------------------------------- 284 (391)
T 3dzz_A 248 I--PN----PDLRARAEESFFLAGIGEPNLLAIPAAIAAYEEG------------------------------------- 284 (391)
T ss_dssp C--CS----HHHHHHHHHHHHHHTCSSCCTTHHHHHHHHHHHC-------------------------------------
T ss_pred E--CC----HHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhcc-------------------------------------
Confidence 9 65 4688888776543 34577888888777666421
Q ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCCh
Q psy14428 478 ILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSA 536 (583)
Q Consensus 478 ~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~ 536 (583)
.+.++++++++.+.++.+.+.|++.. || +....++++++.|..++.
T Consensus 285 -----------~~~~~~~~~~~~~~~~~l~~~l~~~~-~~-~~~~~~~~~~~~~~~~~~ 330 (391)
T 3dzz_A 285 -----------HDWLRELKQVLRDNFAYAREFLAKEV-PE-VKVLDSNASYLAWVDISA 330 (391)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHHHHHHC-TT-SEECCCCBSSEEEEECGG
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHhhC-CC-cEEeccCceEEEEEehhh
Confidence 01245556667788888888888742 32 566778899999877654
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-33 Score=288.34 Aligned_cols=288 Identities=15% Similarity=0.161 Sum_probs=229.6
Q ss_pred CCCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCC
Q psy14428 160 DPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGIS 239 (583)
Q Consensus 160 ~~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G 239 (583)
...++.|+|+.+.+.. + +++.+.+++.+.... ...| +..|.++||+++|++++ +++++|++ |+|
T Consensus 13 ~~~~~~i~l~~~~~~~--~---~~~~v~~a~~~~~~~--~~~y-~~~~~~~l~~~la~~~~------~~~~~i~~--~~g 76 (354)
T 3ly1_A 13 PSTDNPIRINFNENPL--G---MSPKAQAAARDAVVK--ANRY-AKNEILMLGNKLAAHHQ------VEAPSILL--TAG 76 (354)
T ss_dssp CCSSSCEECSSCCCSS--C---CCHHHHHHHHHTGGG--TTSC-CHHHHHHHHHHHHHHTT------SCGGGEEE--ESH
T ss_pred CCCCceEEccCCCCCC--C---CCHHHHHHHHHHHhh--CcCC-CCCchHHHHHHHHHHhC------CChHHEEE--eCC
Confidence 3456789999998642 1 568889988877754 5667 55689999999999984 56789999 999
Q ss_pred chhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCC
Q psy14428 240 GSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSS 319 (583)
Q Consensus 240 ~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p 319 (583)
+++++.++ +..+..+||+|++++|+|..+...++..|++++.+|+ ++ ++++|++.+++.+.+. ++++++++++|
T Consensus 77 ~~~a~~~~---~~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~-~~-~~~~d~~~l~~~l~~~-~~~~~v~l~~p 150 (354)
T 3ly1_A 77 SSEGIRAA---IEAYASLEAQLVIPELTYGDGEHFAKIAGMKVTKVKM-LD-NWAFDIEGLKAAVAAY-SGPSIVYLVNP 150 (354)
T ss_dssp HHHHHHHH---HHHHCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECC-CT-TSCCCHHHHHHHHHTC-SSCEEEEEESS
T ss_pred hHHHHHHH---HHHHhCCCCeEEECCCCchHHHHHHHHcCCEEEEecC-CC-CCCCCHHHHHHHhccC-CCCCEEEEeCC
Confidence 99999985 4456677999999999999999999999999999998 53 4899999999998531 57889999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhc-CcEEEEecCcccccccCccceEEE
Q psy14428 320 HNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEV-GQLCLAQSFSKNMGLYGERVGTFS 398 (583)
Q Consensus 320 ~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~-~~vi~i~S~SK~~~l~GlRiG~lv 398 (583)
|||||.+++.+++++|+++| ++|++||+||+|.++.+++. ....+.. .+.. +++++++||||.+|++|+|+||++
T Consensus 151 ~nptG~~~~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~--~~~~~~~-~~~~~~~~i~~~s~sK~~g~~G~r~G~~~ 226 (354)
T 3ly1_A 151 NNPTGTITPADVIEPWIASK-PANTMFIVDEAYAEFVNDPR--FRSISPM-ITQGAENIILLKTFSKIHAMAGMRVGYAV 226 (354)
T ss_dssp CTTTCCCCCHHHHHHHHHTC-CTTEEEEEECTTGGGCCCTT--CCCSHHH-HHTTCSSEEEEEESSSTTCCGGGCCEEEE
T ss_pred CCCcCCCcCHHHHHHHHHhC-CCCeEEEEeccHHHhccccc--cCCHHHH-hhhcCCCEEEEeeChhhccChhhhheeee
Confidence 99999999999999999999 89999999999999988752 2223333 3444 899999999999999999999999
Q ss_pred EEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHh
Q psy14428 399 VLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEI 478 (583)
Q Consensus 399 ~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~ 478 (583)
+ + +++++++...... .+++.+.|.++..++++..
T Consensus 227 ~--~-----~~~~~~~~~~~~~--~~~~~~~~~a~~~~l~~~~------------------------------------- 260 (354)
T 3ly1_A 227 A--H-----PTVIALMGRYVAG--EKINFSGVDAALASMNDSA------------------------------------- 260 (354)
T ss_dssp C--C-----HHHHHHHGGGTTC--SCCCHHHHHHHHHHTTCHH-------------------------------------
T ss_pred c--C-----HHHHHHHHHhcCC--CCCCHHHHHHHHHHhcCHH-------------------------------------
Confidence 9 6 5889988876654 6889999999988887521
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCCh
Q psy14428 479 LSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSA 536 (583)
Q Consensus 479 l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~ 536 (583)
.++++++++.++++.+.+.|++.+ +... +..|.|.|..++.
T Consensus 261 ------------~~~~~~~~~~~~~~~l~~~l~~~~----~~~~-~~~~~~~~~~~~~ 301 (354)
T 3ly1_A 261 ------------FITYSKKSNDVSRQILLKALEDLK----LPYL-PSEGNFVFHQLVV 301 (354)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHHHT----CCBC-CCCSSEEEEECSS
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHCC----CeEC-CCCceEEEEECCC
Confidence 134445556677777777777664 3333 4456677776653
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-33 Score=296.63 Aligned_cols=290 Identities=19% Similarity=0.184 Sum_probs=233.3
Q ss_pred CCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchh
Q psy14428 163 PKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSG 242 (583)
Q Consensus 163 ~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~ 242 (583)
++.|+|+.|.++. + +++.+.+++.+.+.. ...|++..|.++||+++++++. +++++|++ |+|+++
T Consensus 25 ~~~i~l~~~~~~~--~---~~~~v~~a~~~~~~~--~~~y~~~~~~~~l~~~la~~~~------~~~~~v~~--~~g~~~ 89 (381)
T 1v2d_A 25 LGAVNLGQGFPSN--P---PPPFLLEAVRRALGR--QDQYAPPAGLPALREALAEEFA------VEPESVVV--TSGATE 89 (381)
T ss_dssp HTCEECCCCSCSS--C---CCHHHHHHHHHHTTT--SCSCCCTTCCHHHHHHHHHHHT------SCGGGEEE--ESSHHH
T ss_pred CCeEEecCCCCCC--C---CCHHHHHHHHHHHHH--hcCCCCCCCCHHHHHHHHHhcC------CChhhEEE--cCChHH
Confidence 4679999998742 2 457888888887754 4579888899999999999964 45788999 999999
Q ss_pred HHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEeccc--CCCCCCChhhHHHHHHcCCCCcEEEEeCCCC
Q psy14428 243 SLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFD--NKTNGLDFAGMMEDIKAMPERSILFLQTSSH 320 (583)
Q Consensus 243 al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d--~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~ 320 (583)
++.++ +..+..+||+|++++|+|..+...++..|++++.+|+ + ++++++|++.+++.+ .++++++++++||
T Consensus 90 a~~~~---~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~-~~~~~~~~~d~~~l~~~l---~~~~~~v~~~~~~ 162 (381)
T 1v2d_A 90 ALYVL---LQSLVGPGDEVVVLEPFFDVYLPDAFLAGAKARLVRL-DLTPEGFRLDLSALEKAL---TPRTRALLLNTPM 162 (381)
T ss_dssp HHHHH---HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEEC-EEETTEEECCHHHHHTTC---CTTEEEEEEESSC
T ss_pred HHHHH---HHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEEeC-CCCCccCCcCHHHHHHhc---CcCCEEEEECCCC
Confidence 99986 4445667999999999999999999999999999998 5 334678999888766 4678899999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEE
Q psy14428 321 NPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVL 400 (583)
Q Consensus 321 NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~ 400 (583)
||||.+++.+++++|+++|+++|++||+||+|.++.++. ...++..+ ..++++++.||||.++++|+|+||+++
T Consensus 163 nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~g~---~~~~~~~~--~~~~~~~~~s~sK~~~~~G~r~G~~~~- 236 (381)
T 1v2d_A 163 NPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGE---RPRRLREF--APERTFTVGSAGKRLEATGYRVGWIVG- 236 (381)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSS---CCCCHHHH--CTTTEEEEEEHHHHTTCGGGCCEEEEC-
T ss_pred CCCCCccCHHHHHHHHHHHHHcCCEEEEEcCccccccCC---CCCCHHHh--cCCCEEEEeechhhcCCcccceEEEEe-
Confidence 999999999999999999999999999999999998732 22344443 457899999999999999999999999
Q ss_pred cCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHhcC
Q psy14428 401 TPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEILS 480 (583)
Q Consensus 401 ~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~l~ 480 (583)
+ +++++.+.........+++.+.|.++..+++...
T Consensus 237 -~-----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--------------------------------------- 271 (381)
T 1v2d_A 237 -P-----KEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLAR--------------------------------------- 271 (381)
T ss_dssp -C-----TTTHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHH---------------------------------------
T ss_pred -C-----HHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCcc---------------------------------------
Confidence 6 3678888776666667788888888877764311
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCCh
Q psy14428 481 DPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSA 536 (583)
Q Consensus 481 ~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~ 536 (583)
+.++++++++++.++++.+.+.|++.+ +....+++|+|.|..++.
T Consensus 272 -------~~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~ 316 (381)
T 1v2d_A 272 -------REGFYEALREGYRRRRDLLAGGLRAMG----LRVYVPEGTYFLMAELPG 316 (381)
T ss_dssp -------HTTHHHHHHHHHHHHHHHHHHHHHHTT----CCEECCSBSSEEEEECTT
T ss_pred -------cHHHHHHHHHHHHHHHHHHHHHHHHCC----CEecCCCcceEEEEecCh
Confidence 112245566777888888888888743 555667788999987754
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-34 Score=309.38 Aligned_cols=307 Identities=16% Similarity=0.136 Sum_probs=235.9
Q ss_pred CCCCcc-ccCCccccCCCCCCCCChHHHHHHHHHhcc-------C----CCCCCCCCCCCHHHHHHHHHHHhCCCCCCCC
Q psy14428 161 PHPKKM-NLGVGAYRGEDGKPYVLPSVKEAERRIYEK-------N----LDHEYANIGGDAKFCKLAAQLAYGEDFPAFK 228 (583)
Q Consensus 161 ~~~~~i-~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~-------~----~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~ 228 (583)
.+++.| +|+.|.|+. .|.+.+.+.+++.+...+ . ...+|.+..|.++||+++|+|+.+.+|+.++
T Consensus 29 ~~~~~i~~l~~g~p~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~ 105 (444)
T 3if2_A 29 KSDQPVNMLGGGNPAK---IDAVNELFLETYKALGNDNDTGKANSSAIISMANYSNPQGDSAFIDALVGFFNRHYDWNLT 105 (444)
T ss_dssp HSSSCCEECSCCCCCC---CHHHHHHHHHHHHHHHSCSCTTCCCCHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCC
T ss_pred cCchhhhccCCCCCCc---ccchHHHHHHHHHHHHhccccccccchhhhhhhccCCCCCCHHHHHHHHHHHHhhcCCCCC
Confidence 347889 999998863 122335677777766644 2 1267999999999999999999988899999
Q ss_pred CCCeEEEecCCchhHHHHHHHHHHHhCCCCC--------------EEEEc-CCCChhhHH------HHhhcCCeEEEEec
Q psy14428 229 DNRLAIVQGISGSGSLRVGTAFLERFYPGVK--------------TVYFP-TPTWNGHVR------FCTDSRLNVGAYRY 287 (583)
Q Consensus 229 ~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd--------------~Vlv~-~P~y~~~~~------~~~~~G~~~~~v~~ 287 (583)
+++|++ |+|+++|+.++ +..++.+|| +|+++ +|+|..+.. .+...|.+++.+++
T Consensus 106 ~~~i~~--t~G~t~al~~~---~~~l~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (444)
T 3if2_A 106 SENIAL--TNGSQNAFFYL---FNLFGGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEGQHFAAVLPHIDEVTH 180 (444)
T ss_dssp GGGEEE--ESSHHHHHHHH---HHHSSEEEECC-------CEEEEEEEESSSSCCGGGTTCCSSSCCEEECCCEEEEEEE
T ss_pred HHHEEE--ecCcHHHHHHH---HHHHhCCCccccccccccccccceEEEeCCCCccchhhcccccchhhccCceEEeccc
Confidence 999999 99999999985 455666787 78875 999999986 35567888988888
Q ss_pred ccCC----CCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCc
Q psy14428 288 FDNK----TNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKD 363 (583)
Q Consensus 288 ~d~~----~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~ 363 (583)
|++ ++++|++.+++++++..++++++++++||||||.+++.+++++|+++|+++|++||+||+|..+.......+
T Consensus 181 -~~~~g~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~ 259 (444)
T 3if2_A 181 -DGEEGFFKYRVDFEALENLPALKEGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAYGMPFPNIIYSD 259 (444)
T ss_dssp -TTEEEEEEEECCHHHHHTCHHHHTTCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSC
T ss_pred -ccccCccccCCCHHHHHHHHHhcCCCceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCCEEEEECCCCCccccccccc
Confidence 432 247899999887433367889999999999999999999999999999999999999999986432210000
Q ss_pred hHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhh
Q psy14428 364 AFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLK 443 (583)
Q Consensus 364 ~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~ 443 (583)
.. ....++++++.||||. +++|+|+||+++ + +++++.+.........+++.+.|.++..++++..+.
T Consensus 260 ~~-----~~~~~~~i~~~S~sK~-~~~G~r~G~~~~--~-----~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~ 326 (444)
T 3if2_A 260 AH-----LNWDNNTILCFSLSKI-GLPGMRTGIIVA--D-----AKVIEAVSAMNAVVNLAPTRFGAAIATPLVANDRIK 326 (444)
T ss_dssp CC-----CCCCTTEEEEEESTTT-TCGGGCCEEEEC--C-----HHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHTSHHH
T ss_pred cc-----ccCCCCEEEEechhhc-cCCCCceEEEEE--C-----HHHHHHHHHHHHhccCCCChHHHHHHHHHHHcCchh
Confidence 00 1235789999999997 789999999998 6 689999998888778889999999998888764322
Q ss_pred hhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHhcCChhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCC-Cccc
Q psy14428 444 AQCDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKG-MSNRISSIREELKSKILDKGSKK-NWDH 521 (583)
Q Consensus 444 ~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~l~~~~~~~~~~~~l~~-~~~~~~~~r~~l~~~L~~~~~pg-~~~~ 521 (583)
+++++ +++.+.++++.+.+.|++.. ++ .+..
T Consensus 327 ----------------------------------------------~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~~~ 359 (444)
T 3if2_A 327 ----------------------------------------------QLSDNEIKPFYQKQATLAVKLLKQAL-GDYPLMI 359 (444)
T ss_dssp ----------------------------------------------HHHHHTHHHHHHHHHHHHHHHHHHHS-SSSSEEE
T ss_pred ----------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHhc-ccCCceE
Confidence 22333 55566777777777777643 22 3556
Q ss_pred ccccccceeecCCCh
Q psy14428 522 ITNQKGMFCYTGLSA 536 (583)
Q Consensus 522 ~~~~~g~f~~~~l~~ 536 (583)
..+++|+|.|..++.
T Consensus 360 ~~~~~g~~~~~~~~~ 374 (444)
T 3if2_A 360 HKPEGAIFLWLWFKD 374 (444)
T ss_dssp ECCCBSSEEEEEETT
T ss_pred ecCCccEEEEEEcCC
Confidence 678899999986653
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-33 Score=296.55 Aligned_cols=298 Identities=11% Similarity=0.066 Sum_probs=230.5
Q ss_pred CCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHH-HHHHHHHHHhCCCCCCCCCCCeEEEecCCch
Q psy14428 163 PKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAK-FCKLAAQLAYGEDFPAFKDNRLAIVQGISGS 241 (583)
Q Consensus 163 ~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~-Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~ 241 (583)
++.|+|+.+.++ .+ +++.+.+++.+.+... ..+|++. .++ ||+++|+++.+.+|+.+++++|++ |+|++
T Consensus 28 ~~~i~l~~~~~~--~~---~~~~v~~a~~~~~~~~-~~~y~~~--~~~~lr~~la~~l~~~~g~~~~~~~v~~--t~g~~ 97 (390)
T 1d2f_A 28 ADLLPFTISDMD--FA---TAPCIIEALNQRLMHG-VFGYSRW--KNDEFLAAIAHWFSTQHYTAIDSQTVVY--GPSVI 97 (390)
T ss_dssp --CEECCSSSCS--SC---CCHHHHHHHHHHHTTC-CCCCCCS--CCHHHHHHHHHHHHHHSCCCCCGGGEEE--ESCHH
T ss_pred CCeeEeeecCCC--CC---CCHHHHHHHHHHHhCC-CCCCCCC--ChHHHHHHHHHHHHHhcCCCCCHHHEEE--cCCHH
Confidence 467999988874 22 5678999888877542 4678765 788 999999999887888888999999 99999
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCC--CCCCChhhHHHHHHcCCCCcEEEEeCCC
Q psy14428 242 GSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNK--TNGLDFAGMMEDIKAMPERSILFLQTSS 319 (583)
Q Consensus 242 ~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~--~~g~d~~~l~~~l~~~~~~~~~i~i~~p 319 (583)
+++.++ +..+..+||+|++++|+|..+...++..|++++.+|+ +.+ ++.+|++.+++.+.. .+++++++++|
T Consensus 98 ~al~~~---~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~-~~~~~~~~~d~~~l~~~l~~--~~~~~v~l~~p 171 (390)
T 1d2f_A 98 YMVSEL---IRQWSETGEGVVIHTPAYDAFYKAIEGNQRTVMPVAL-EKQADGWFCDMGKLEAVLAK--PECKIMLLCSP 171 (390)
T ss_dssp HHHHHH---HHHSSCTTCEEEEEESCCHHHHHHHHHTTCEEEEEEC-EECSSSEECCHHHHHHHHTS--TTEEEEEEESS
T ss_pred HHHHHH---HHHhcCCCCEEEEcCCCcHHHHHHHHHCCCEEEEeec-ccCCCccccCHHHHHHHhcc--CCCeEEEEeCC
Confidence 999985 4556777999999999999999999999999999998 433 234899999998842 36788888999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEE
Q psy14428 320 HNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSV 399 (583)
Q Consensus 320 ~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~ 399 (583)
|||||.+++.+++++|+++|+++|++||+||+|.++.+++. ...++..+....... +.||||.+|++|+|+||+++
T Consensus 172 ~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~~~~~d~--~~s~sK~~~~~G~r~G~~~~ 247 (390)
T 1d2f_A 172 QNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQ--PHIPWSNVARGDWAL--LTSGSKSFNIPALTGAYGII 247 (390)
T ss_dssp CTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSS--CCCCGGGTCCSSEEE--EECSHHHHTCGGGCCEEEEE
T ss_pred CCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCC--CCcCHHHcchhhHhh--ccCccHhhcccChhheEEEE
Confidence 99999999999999999999999999999999999988652 233333321111022 99999999999999999999
Q ss_pred EcCCchhHHHHHHHHHHHHh-ccc-cCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHH
Q psy14428 400 LTPTSDETERIMSQLKILIR-GFY-SNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTE 477 (583)
Q Consensus 400 ~~p~~~~~~~li~~l~~~~~-~~~-~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~ 477 (583)
++ +++++.+..... ... .+++.+.|.++...+++.
T Consensus 248 --~~----~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~------------------------------------- 284 (390)
T 1d2f_A 248 --EN----SSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQG------------------------------------- 284 (390)
T ss_dssp --CS----HHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHC-------------------------------------
T ss_pred --CC----HHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhcC-------------------------------------
Confidence 65 468888877665 333 478888888877766421
Q ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCCh
Q psy14428 478 ILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSA 536 (583)
Q Consensus 478 ~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~ 536 (583)
.+.++++++++.++++.+.+.|++. .|| +....++++++.|..++.
T Consensus 285 -----------~~~~~~~~~~~~~~~~~l~~~L~~~-~~~-~~~~~~~~~~~~~~~~~~ 330 (390)
T 1d2f_A 285 -----------APWLDALRIYLKDNLTYIADKMNAA-FPE-LNWQIPQSTYLAWLDLRP 330 (390)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHHHHHH-CSS-CCCCCCSBCSEEEEECGG
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHhh-CCC-CEEecCCccEEEEEEccc
Confidence 0114455666778888888888873 133 555677889998877653
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-34 Score=317.16 Aligned_cols=302 Identities=10% Similarity=0.023 Sum_probs=223.2
Q ss_pred CccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCC-CCCCCHHHHHHHHHHHhCC-CC-CCCC-CCCeEEEecCC
Q psy14428 164 KKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYA-NIGGDAKFCKLAAQLAYGE-DF-PAFK-DNRLAIVQGIS 239 (583)
Q Consensus 164 ~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~-~~~G~~~Lr~aia~~~~~~-~g-~~~~-~~~I~i~~t~G 239 (583)
..++|+.|.++.+ +++.+.++...+.. ..|+ +..|.++||+++++++... ++ +.++ +++|++ |+|
T Consensus 104 ~~i~l~~g~~~~~-----~~~~v~a~~~~~~~----~~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~--t~G 172 (533)
T 3f6t_A 104 DAVNYCHTELGLN-----RDKVVAEWVNGAVA----NNYPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFP--TEG 172 (533)
T ss_dssp HHHHHHHHTTCCC-----HHHHHHHHHHHHHT----CSCCSSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEE--EEH
T ss_pred hheeccCCCCCcC-----CcHHHHHHHHHHHh----CCCCCCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEEE--ECC
Confidence 4688998888632 33445555444442 3455 8899999999999999655 34 5555 479999 999
Q ss_pred chhHHHHHHHHHHH--hCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEeccc--CCCCCCChhhHHHHHHcCCCCcEEEE
Q psy14428 240 GSGSLRVGTAFLER--FYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFD--NKTNGLDFAGMMEDIKAMPERSILFL 315 (583)
Q Consensus 240 ~~~al~l~~~~l~~--~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d--~~~~g~d~~~l~~~l~~~~~~~~~i~ 315 (583)
+++++.++...+.. ++.+||+|++++|+|..+...++..|++++.+++.. ++++++|++.+++.+ .+++++++
T Consensus 173 ~t~al~~~~~~l~~~~l~~~gd~Viv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~d~~~l~~~l---~~~~k~v~ 249 (533)
T 3f6t_A 173 GTAAIVYAFHSLAENHLLKKGDKIAINEPIFTPYLRIPELKDYELVEVDLHSYEKNDWEIEPNEIEKLK---DPSIKALI 249 (533)
T ss_dssp HHHHHHHHHHHHHHTTSSCTTCEEEEESSCCHHHHTSGGGGGSEEEEECCCEETTTTSEECHHHHHHHS---CTTEEEEE
T ss_pred HHHHHHHHHHHhhhhhccCCcCEEEEcCCCcHHHHHHHHHcCCeEEEEEecCCcccCCCCCHHHHHHHh---CCCCeEEE
Confidence 99999986332111 567799999999999999999999999999998832 345788999998877 56889999
Q ss_pred eCCCCCCCCCCCCHHHHHHHHHHHH-hcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccc
Q psy14428 316 QTSSHNPTGVDLSEDQWRQLAVVVK-QRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERV 394 (583)
Q Consensus 316 i~~p~NPTG~~~s~~~~~~l~~~a~-~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRi 394 (583)
+++||||||.+++.+++++|+++|+ +++++||+||+|.+|.++. .++... ..+++|+++||||++|++|+|+
T Consensus 250 l~~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~~-----~~~~~~--~~~~~i~~~S~SK~~g~~G~Ri 322 (533)
T 3f6t_A 250 VVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPNF-----KSIYSV--VPYNTMLVYSYSKLFGCTGWRL 322 (533)
T ss_dssp EESSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTTC-----CCHHHH--SGGGEEEEEESHHHHTCGGGCE
T ss_pred EeCCCCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCccccccCc-----cCHhhc--CCCCEEEEecCcccCCCcccce
Confidence 9999999999999999999999999 6899999999999998753 133332 2468999999999999999999
Q ss_pred eEEEEEcCCchhHHHHHHHH--------------------------------HHHHhccccCCChHHHHHHH----HHhC
Q psy14428 395 GTFSVLTPTSDETERIMSQL--------------------------------KILIRGFYSNPPIHGARIVT----EILS 438 (583)
Q Consensus 395 G~lv~~~p~~~~~~~li~~l--------------------------------~~~~~~~~~~~s~~~q~~~~----~~l~ 438 (583)
||+++ ++++..+.+++.+ .........+++.+.|.+++ ..+.
T Consensus 323 G~l~~--~~~~~~~~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a~~a~~~L~ 400 (533)
T 3f6t_A 323 GVIAL--NEKNVFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHLL 400 (533)
T ss_dssp EEEEE--ESSCHHHHHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHHHHHHHHHT
T ss_pred EEEEE--CcHHHHHHHHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHh
Confidence 99999 6543223344332 22233344555666665532 2221
Q ss_pred ChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q psy14428 439 DPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKN 518 (583)
Q Consensus 439 ~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~ 518 (583)
+.+ . .+.|.++++++++++.++|+.|.+.|. .+
T Consensus 401 ~~~--------------------------------------g----~~~~~~~~~~~~~~~~~r~~~l~~~L~-~~---- 433 (533)
T 3f6t_A 401 TST--------------------------------------N----GGSDDPYIDIARKLVSERYDQLHDAMQ-AP---- 433 (533)
T ss_dssp TCB--------------------------------------G----GGTBCHHHHHHHHHHHHHHHHHHHHHT-CC----
T ss_pred hhc--------------------------------------c----ccchHHHHHHHHHHHHHHHHHHHHhcC-CC----
Confidence 000 0 001234577888889999999999986 32
Q ss_pred cccccccccceeecCCC
Q psy14428 519 WDHITNQKGMFCYTGLS 535 (583)
Q Consensus 519 ~~~~~~~~g~f~~~~l~ 535 (583)
+....+++|+|.|.+++
T Consensus 434 ~~~~~~~~g~~~~~~l~ 450 (533)
T 3f6t_A 434 KDETDTNTHYYSLIDIY 450 (533)
T ss_dssp CCCSTTBCCSEEEEEHH
T ss_pred ccccCCCceEEEEEehH
Confidence 56678899999998765
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-33 Score=291.10 Aligned_cols=284 Identities=16% Similarity=0.099 Sum_probs=226.4
Q ss_pred CCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchh
Q psy14428 163 PKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSG 242 (583)
Q Consensus 163 ~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~ 242 (583)
++.|+|+.+++.. + +++.+.+++.+.... ...|++..+ .+||+++|++++ +++++|++ |+|+++
T Consensus 30 ~~~i~l~~~~~~~--~---~~~~v~~a~~~~~~~--~~~y~~~~~-~~lr~~la~~~~------~~~~~v~~--~~g~~~ 93 (365)
T 3get_A 30 KEVIKLASNENPF--G---TPPKAIECLRQNANK--AHLYPDDSM-IELKSTLAQKYK------VQNENIII--GAGSDQ 93 (365)
T ss_dssp SCCEECSSCCCTT--C---SCHHHHHHHHHHGGG--TTSCCCTTC-HHHHHHHHHHHT------CCGGGEEE--ESSHHH
T ss_pred CceEEecCCCCCC--C---CCHHHHHHHHHHHHh--hccCCCCCh-HHHHHHHHHHhC------CCcceEEE--CCCHHH
Confidence 6789999998742 2 568888888887753 567887777 999999999984 46789999 999999
Q ss_pred HHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCC
Q psy14428 243 SLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNP 322 (583)
Q Consensus 243 al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NP 322 (583)
++.++ +..++.+||+|++++|+|..+...++..|++++.+|+ +.+++ +|++.+++.+ .++++++++++||||
T Consensus 94 a~~~~---~~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~-~~~~~-~d~~~l~~~l---~~~~~~v~~~~p~np 165 (365)
T 3get_A 94 VIEFA---IHSKLNSKNAFLQAGVTFAMYEIYAKQCGAKCYKTQS-ITHNL-DEFKKLYETH---KDEIKLIFLCLPNNP 165 (365)
T ss_dssp HHHHH---HHHHCCTTCEEEECSSCCTHHHHHHHHHTCEEEECSS-SSCCH-HHHHHHHHHT---TTTEEEEEEESSCTT
T ss_pred HHHHH---HHHHhCCCCEEEEeCCChHHHHHHHHHcCCEEEEEec-CCCCC-CCHHHHHHHh---CCCCCEEEEcCCCCC
Confidence 99985 4456677999999999999999999999999999998 44556 8899998887 578899999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCC--CCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEE
Q psy14428 323 TGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTS--GDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVL 400 (583)
Q Consensus 323 TG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~--~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~ 400 (583)
||.+++.+++++|+++| ++|++||+||+|.++.+ .+. ...+.....+..+++++++||||.+|++|+|+||+++
T Consensus 166 tG~~~~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~- 241 (365)
T 3get_A 166 LGECLDASEATEFIKGV-NEDCLVVIDAAYNEFASFKDSK--KHLEPCELIKEFDNVLYLGTFSKLYGLGGLRIGYGIA- 241 (365)
T ss_dssp TCCCCCHHHHHHHHHTS-CTTSEEEEECTTHHHHHHHCGG--GCCCHHHHHHHCTTEEEEEESSSTTSCTTTCCEEEEE-
T ss_pred CCCCcCHHHHHHHHHhC-CCCcEEEEeCccHHHhcccCCc--ccccHhHHhccCCCEEEEeecchHhcCcchheEEEEc-
Confidence 99999999999999998 57999999999999885 321 2223333345678999999999999999999999999
Q ss_pred cCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHhcC
Q psy14428 401 TPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEILS 480 (583)
Q Consensus 401 ~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~l~ 480 (583)
+ +++++++...... .+++.+.|.++..++++.
T Consensus 242 -~-----~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~---------------------------------------- 273 (365)
T 3get_A 242 -N-----ANIISAFYKLRAP--FNVSNLALKAAVAAMDDD---------------------------------------- 273 (365)
T ss_dssp -C-----HHHHHHHHHHSCT--TCSCHHHHHHHHHHHTCH----------------------------------------
T ss_pred -C-----HHHHHHHHHhcCC--CCcCHHHHHHHHHHhCCH----------------------------------------
Confidence 6 5888888876543 468899999988888752
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCCh
Q psy14428 481 DPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSA 536 (583)
Q Consensus 481 ~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~ 536 (583)
++++++++++.++++.+.+.|++.+ +... +..|.|.|..++.
T Consensus 274 ---------~~~~~~~~~~~~~~~~l~~~l~~~g----~~~~-~~~~~~~~~~~~~ 315 (365)
T 3get_A 274 ---------EFTEKTLENNFSQMELYKEFAKKHN----IKII-DSYTNFITYFFDE 315 (365)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHTT----CEEC-CCSSSEEEEECSS
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHhCC----CEEC-CCCCeEEEEECCC
Confidence 1134455566777778888887763 3333 3445667776654
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-33 Score=294.83 Aligned_cols=294 Identities=15% Similarity=0.134 Sum_probs=234.5
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
.+++.++|+.|.+.. + +++.+.+++ +.+... ...|++..|..+||+++++++...+|+.+++++|++ |+|+
T Consensus 41 ~g~~~i~l~~~~~~~--~---~~~~v~~a~-~~l~~~-~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~--~~g~ 111 (409)
T 2gb3_A 41 RGVRIHHLNIGQPDL--K---TPEVFFERI-YENKPE-VVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLV--TNGG 111 (409)
T ss_dssp TTCEEEECSSCCCCS--C---CCTHHHHHH-HHTCCS-SCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEE--ESHH
T ss_pred cCCCEEeccCCCCCC--C---CCHHHHHHH-HHHhcC-CCCCCCCCCcHHHHHHHHHHHHHHhCCCCCHHHEEE--eCCH
Confidence 356789999999842 2 346788888 766543 457998899999999999999988888899999999 9999
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccC-CCCCCChhhHHHHHHcCCCCcEEEEeCCC
Q psy14428 241 SGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDN-KTNGLDFAGMMEDIKAMPERSILFLQTSS 319 (583)
Q Consensus 241 ~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~-~~~g~d~~~l~~~l~~~~~~~~~i~i~~p 319 (583)
++|+.++ +..+..+||+|++++|+|..+...++..|++++.+|+ ++ +++.+ ++.+++.+ .++++++++++|
T Consensus 112 t~a~~~~---~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~-~~~~~~~~-~~~l~~~l---~~~~~~v~~~~p 183 (409)
T 2gb3_A 112 SEAILFS---FAVIANPGDEILVLEPFYANYNAFAKIAGVKLIPVTR-RMEEGFAI-PQNLESFI---NERTKGIVLSNP 183 (409)
T ss_dssp HHHHHHH---HHHHCCTTCEEEEEESCCTHHHHHHHHHTCEEEEEEC-CGGGTSCC-CTTGGGGC---CTTEEEEEEESS
T ss_pred HHHHHHH---HHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEecc-CCCCCCcc-HHHHHHhh---CcCCeEEEECCC
Confidence 9999986 3445677999999999999999999999999999998 43 23333 67776665 457889999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEE
Q psy14428 320 HNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSV 399 (583)
Q Consensus 320 ~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~ 399 (583)
|||||.+++.+++++|+++|+++|++||+||+|.++.+++. ..++ +.+..+++++++||||.+|++|+|+||+++
T Consensus 184 ~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~---~~~~--~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~ 258 (409)
T 2gb3_A 184 CNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGE---FASA--LSIESDKVVVIDSVSKKFSACGARVGCLIT 258 (409)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSC---CCCG--GGSCCTTEEEEEESTTTTTCGGGCCEEEEC
T ss_pred CCCCCCCcCHHHHHHHHHHHHHcCCEEEEECcccccccCCC---CCCc--cccCCCCEEEEecchhccCCccceEEEEEE
Confidence 99999999999999999999999999999999999987641 1122 112246799999999999999999999999
Q ss_pred EcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHhc
Q psy14428 400 LTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEIL 479 (583)
Q Consensus 400 ~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~l 479 (583)
++ +++++.+........ +++.+.|.++..+++...
T Consensus 259 --~~----~~l~~~l~~~~~~~~-~~~~~~~~a~~~~l~~~~-------------------------------------- 293 (409)
T 2gb3_A 259 --RN----EELISHAMKLAQGRL-APPLLEQIGSVGLLNLDD-------------------------------------- 293 (409)
T ss_dssp --SC----HHHHHHHHHHHHHSC-CCCHHHHHHHHHHHTCCH--------------------------------------
T ss_pred --Cc----HHHHHHHHHHHhccC-CCCHHHHHHHHHHHhccH--------------------------------------
Confidence 63 268888887766555 888999988888775410
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc-ccccccceeecCCC
Q psy14428 480 SDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDH-ITNQKGMFCYTGLS 535 (583)
Q Consensus 480 ~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~-~~~~~g~f~~~~l~ 535 (583)
+.++++++++.++++.+.+.|++.+ +.. ..+++|+|.|..++
T Consensus 294 ----------~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~ 336 (409)
T 2gb3_A 294 ----------SFFDFVRETYRERVETVLKKLEEHG----LKRFTKPSGAFYITAELP 336 (409)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHHHHHTT----CCCBCCCSBSSEEEEECS
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHcC----ceeeeCCCeeEEEEEEeC
Confidence 1144556666778888888888763 445 56788999997765
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-32 Score=284.42 Aligned_cols=275 Identities=16% Similarity=0.178 Sum_probs=214.8
Q ss_pred CccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhH
Q psy14428 164 KKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGS 243 (583)
Q Consensus 164 ~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~a 243 (583)
+.|+|+.|++. .++| +.+ + .. ...+|++. +.++||+++|+++. +++++|++ |+|++++
T Consensus 30 ~~i~l~~~~~~--~~~~---~~v--a----~~--~~~~Y~~~-~~~~lr~~la~~~~------~~~~~v~~--~~G~~~a 87 (356)
T 1fg7_A 30 GDVWLNANEYP--TAVE---FQL--T----QQ--TLNRYPEC-QPKAVIENYAQYAG------VKPEQVLV--SRGADEG 87 (356)
T ss_dssp CSEECSSCCCS--SCCC---CCC--C----CC--CTTSCCCS-SCHHHHHHHHHHHT------SCGGGEEE--ESHHHHH
T ss_pred ceEEeeCCCCC--CCCC---HhH--h----hh--hhccCCCc-cHHHHHHHHHHHhC------CChHHEEE--cCCHHHH
Confidence 57899999864 3322 233 1 11 25678765 58999999999993 56789999 9999999
Q ss_pred HHHHHHHHHHhCCCC-CEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCC
Q psy14428 244 LRVGTAFLERFYPGV-KTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNP 322 (583)
Q Consensus 244 l~l~~~~l~~~~~~g-d~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NP 322 (583)
+.++ +..++.+| |+|++++|+|..+...++..|++++.+|+ + +++++|++.+++.+ . +++++++++||||
T Consensus 88 i~~~---~~~~~~~g~d~Vl~~~p~~~~~~~~~~~~g~~~~~v~~-~-~~~~~d~~~l~~~i---~-~~~~v~l~~p~np 158 (356)
T 1fg7_A 88 IELL---IRAFCEPGKDAILYCPPTYGMYSVSAETIGVECRTVPT-L-DNWQLDLQGISDKL---D-GVKVVYVCSPNNP 158 (356)
T ss_dssp HHHH---HHHHCCTTTCEEEECSSSCTHHHHHHHHHTCEEEECCC-C-TTSCCCHHHHHTSC---T-TEEEEEEESSCTT
T ss_pred HHHH---HHHHhCCCCCEEEEeCCChHHHHHHHHHcCCEEEEeeC-C-CCCCCCHHHHHHHh---c-CCCEEEEeCCCCC
Confidence 9985 44566779 99999999999999999999999999998 4 34688998887766 3 7889999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcC
Q psy14428 323 TGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTP 402 (583)
Q Consensus 323 TG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p 402 (583)
||.+++.+++++|+++|+ ++++||+||+|.++.... ++..+.+..+++++++||||.||++|+|+||+++ +
T Consensus 159 tG~~~~~~~l~~l~~~~~-~~~~li~De~~~~~~~~~------~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~--~ 229 (356)
T 1fg7_A 159 TGQLINPQDFRTLLELTR-GKAIVVADEAYIEFCPQA------SLAGWLAEYPHLAILRTLSKAFALAGLRCGFTLA--N 229 (356)
T ss_dssp TCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGGG------CSGGGTTTCTTEEEEEESSSTTCCGGGCCEEEEE--C
T ss_pred CCCCCCHHHHHHHHHhCC-CCCEEEEEccchhhcCCC------cHHHHHhhCCCEEEEecchHhhcCchhhhEEEEe--C
Confidence 999999999999999999 999999999999987211 1122224457899999999999999999999999 6
Q ss_pred CchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHhcCCh
Q psy14428 403 TSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDP 482 (583)
Q Consensus 403 ~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~l~~~ 482 (583)
+++++++...... +++|.++|.++..++++..+
T Consensus 230 -----~~~~~~l~~~~~~--~~~~~~~~~a~~~~l~~~~~---------------------------------------- 262 (356)
T 1fg7_A 230 -----EEVINLLMKVIAP--YPLSTPVADIAAQALSPQGI---------------------------------------- 262 (356)
T ss_dssp -----HHHHHHHHHHSCS--SCSCHHHHHHHHHHTSHHHH----------------------------------------
T ss_pred -----HHHHHHHHHhcCC--CCCCHHHHHHHHHHhcCccH----------------------------------------
Confidence 5888888876433 37889999988888864211
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCC
Q psy14428 483 KLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLS 535 (583)
Q Consensus 483 ~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~ 535 (583)
++++++++++.++|+.+.+.|++++ + +....+.+|.|.|..++
T Consensus 263 -------~~~~~~~~~~~~~~~~l~~~L~~~~--~-~~~~~~~~~~~~~~~~~ 305 (356)
T 1fg7_A 263 -------VAMRERVAQIIAEREYLIAALKEIP--C-VEQVFDSETNYILARFK 305 (356)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHST--T-EEEECCCSSSEEEEEET
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHhCC--C-ceEECCCCCeEEEEECC
Confidence 1244556667788888999998753 2 22334667888897765
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-33 Score=292.45 Aligned_cols=289 Identities=17% Similarity=0.131 Sum_probs=215.9
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhcc----CCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEe
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEK----NLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQ 236 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~----~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~ 236 (583)
.+++.++|+.|.++. + +++.+.+++.+..+. ....+|++..|.++||+++|+++. +|+ +++++|++
T Consensus 31 ~~~~~i~l~~~~~~~--~---~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~--~g~-~~~~~v~~-- 100 (400)
T 3asa_A 31 PQHTVINLSIGDTTQ--P---LNASVAEAFASSIARLSSPTTCRGYGPDFGLPALRQKLSEDFY--RGF-VDAKEIFI-- 100 (400)
T ss_dssp TTSCCEECSSCCCCC--C---CCHHHHHHHHHHHHHHTSSSCCCCCCCTTCCHHHHHHHHHTTS--TTS-SCGGGEEE--
T ss_pred CCCceEeccCCCCCC--C---CCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHH--cCC-CCHHHEEE--
Confidence 456789999998742 1 457777777766543 124679888999999999999975 455 77899999
Q ss_pred cCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCe-EEEEecccCC-CCCCChhhHHHHHHcCCCCcEEE
Q psy14428 237 GISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLN-VGAYRYFDNK-TNGLDFAGMMEDIKAMPERSILF 314 (583)
Q Consensus 237 t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~-~~~v~~~d~~-~~g~d~~~l~~~l~~~~~~~~~i 314 (583)
|+|+++++.++. ..+ .+||+|++++|+|..+...++..|++ ++.+|+ +++ .+..+++. .++++++
T Consensus 101 ~~G~~~al~~~~---~~~-~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~l~~--------~~~~~~v 167 (400)
T 3asa_A 101 SDGAKVDLFRLL---SFF-GPNQTVAIQDPSYPAYLDIARLTGAKEIIALPC-LQENAFFPEFPE--------DTHIDIL 167 (400)
T ss_dssp ESCHHHHHHHHH---HHH-CSSCEEEEEESCCHHHHHHHHHTTCSEEEEEEC-CGGGTTCCCCCT--------TCCCSEE
T ss_pred ccChHHHHHHHH---HHc-CCCCEEEECCCCcHHHHHHHHHcCCcceEeccc-chhcCcccChhh--------ccCccEE
Confidence 999999999853 334 45999999999999999999999999 999998 432 22223211 1456788
Q ss_pred EeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccc
Q psy14428 315 LQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERV 394 (583)
Q Consensus 315 ~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRi 394 (583)
++++||||||.+++.+++++|+++|+++|++||+||+|.++.+++. .+.++..+....+++++++||||.+|++|+|+
T Consensus 168 ~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~s~sK~~g~~Glri 245 (400)
T 3asa_A 168 CLCSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPS--LPKSIFEIPDARFCAIEINSFSKPLGFAGIRL 245 (400)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTT--SCSSGGGSTTGGGTEEEEEECCGGGTTTTCCC
T ss_pred EEeCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCC--CCCchhhCCCCCCceEEEecchhhcCCcchhe
Confidence 8889999999999999999999999999999999999999987641 12233332112457999999999999999999
Q ss_pred eEEEEEcCCchhHHHH-------HHHHHHH-HhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCC
Q psy14428 395 GTFSVLTPTSDETERI-------MSQLKIL-IRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSN 466 (583)
Q Consensus 395 G~lv~~~p~~~~~~~l-------i~~l~~~-~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~ 466 (583)
||+++ ++ ++ ++.+... ....+.+++.+.|.++..++++.
T Consensus 246 G~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-------------------------- 292 (400)
T 3asa_A 246 GWTVI--PQ-----ELTYADGHFVIQDWERFLSTTFNGASIPAQEAGVAGLSIL-------------------------- 292 (400)
T ss_dssp EEEEC--CT-----TCBCTTSCBHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHT--------------------------
T ss_pred eEEee--Ch-----hhccchhhhHHHHHHHHhccCccCCChHHHHHHHHHhCcH--------------------------
Confidence 99998 63 44 4555432 22334468889888887776532
Q ss_pred CccchhhHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecC-CC
Q psy14428 467 PPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTG-LS 535 (583)
Q Consensus 467 ~p~~g~~i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~-l~ 535 (583)
+++++++++.++|+.+.+.|++.+ +....+++|+|.|.. ++
T Consensus 293 ------------------------~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~ 334 (400)
T 3asa_A 293 ------------------------PQLEAIHYYRENSDLLRKALLATG----FEVFGGEHAPYLWVKPTQ 334 (400)
T ss_dssp ------------------------TTCHHHHHHHHHHHHHHHHHHHTT----CEEEECSSSSEEEEECCC
T ss_pred ------------------------HHHHHHHHHHHHHHHHHHHHHHCC----CeeeCCCCceEEEEeccC
Confidence 123345556778888888888753 445556788999987 65
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-33 Score=295.01 Aligned_cols=301 Identities=15% Similarity=0.128 Sum_probs=240.2
Q ss_pred CCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCch
Q psy14428 162 HPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGS 241 (583)
Q Consensus 162 ~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~ 241 (583)
+++.++|+.|.++.. +++.+.+++.+.+... ...|++.. .++++++++++.+.+++.+++++|++ |+|++
T Consensus 60 g~~~i~~~~~~~~~~-----~~~~v~~a~~~~~~~~-~~~y~~~~--~~l~~~l~~~l~~~~g~~~~~~~v~~--~~g~~ 129 (421)
T 3l8a_A 60 NPELLQMWVADMDFL-----PVPEIKEAIINYGREH-IFGYNYFN--DDLYQAVIDWERKEHDYAVVKEDILF--IDGVV 129 (421)
T ss_dssp CTTCEECCSSCCCSC-----CCHHHHHHHHHHHHHC-CSSCBCCC--HHHHHHHHHHHHHHHCCCCCGGGEEE--ESCHH
T ss_pred CCCeeecccCCCCCC-----CCHHHHHHHHHHHhcC-CcCCCCCC--HHHHHHHHHHHHHHhCCCCCHHHEEE--cCCHH
Confidence 567899999976422 5688888888777543 56676543 89999999999988888889999999 99999
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecc-cCCCCCCChhhHHHHHHcCCCCcEEEEeCCCC
Q psy14428 242 GSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYF-DNKTNGLDFAGMMEDIKAMPERSILFLQTSSH 320 (583)
Q Consensus 242 ~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~-d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~ 320 (583)
+|++++ +..+..+||+|++++|+|..+...++..|.+++.+|+. ++.++.+|++.+++.+.+ ++++++++++||
T Consensus 130 ea~~~a---~~~~~~~gd~Vi~~~~~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~le~~i~~--~~~~~vil~~p~ 204 (421)
T 3l8a_A 130 PAISIA---LQAFSEKGDAVLINSPVYYPFARTIRLNDHRLVENSLQIINGRFEIDFEQLEKDIID--NNVKIYLLCSPH 204 (421)
T ss_dssp HHHHHH---HHHHSCTEEEEEEEESCCHHHHHHHHHTTEEEEEEECEEETTEEECCHHHHHHHHHH--TTEEEEEEESSB
T ss_pred HHHHHH---HHHhcCCCCEEEECCCCcHHHHHHHHHCCCEEEeccccccCCCeeeCHHHHHHHhhc--cCCeEEEECCCC
Confidence 999985 44566779999999999999999999999999999983 122345899999999842 578999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHH-HhcCcEEEEecCcccccccCccceEEEE
Q psy14428 321 NPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFA-KEVGQLCLAQSFSKNMGLYGERVGTFSV 399 (583)
Q Consensus 321 NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~-~~~~~vi~i~S~SK~~~l~GlRiG~lv~ 399 (583)
||||.+++++++++|+++|+++|++||+||+|.++.+.+. ...++..+. +..++++++.|+||.+|++|+|+||+++
T Consensus 205 nptG~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~~~G~~~~ 282 (421)
T 3l8a_A 205 NPGGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGN--THHSLNTLDASYKDFTIILSSATKTFNIAGTKNSFAII 282 (421)
T ss_dssp TTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTC--CCCCGGGSCTTGGGTEEEEECSHHHHTCGGGCCEEEEC
T ss_pred CCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCC--CCccHHHcCchhcCcEEEEEeChhhccCchhheEeEEc
Confidence 9999999999999999999999999999999999998762 233333322 2347899999999999999999999999
Q ss_pred EcCCchhHHHHHHHHHHHH-hccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHh
Q psy14428 400 LTPTSDETERIMSQLKILI-RGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEI 478 (583)
Q Consensus 400 ~~p~~~~~~~li~~l~~~~-~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~ 478 (583)
++ +++++.+.... .....+.+.++|.++..+++..
T Consensus 283 --~~----~~l~~~~~~~~~~~~~~~~n~~~~~a~~aal~~~-------------------------------------- 318 (421)
T 3l8a_A 283 --QN----ESLRRKFQYRQLANNQHEVPTVGMIATQAAFQYG-------------------------------------- 318 (421)
T ss_dssp --CS----HHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHC--------------------------------------
T ss_pred --CC----HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHhcc--------------------------------------
Confidence 75 47888888765 3345578888888887776421
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCCh
Q psy14428 479 LSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSA 536 (583)
Q Consensus 479 l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~ 536 (583)
..| ++++++++.++++.+.+.|++. || +....++++++.|..++.
T Consensus 319 -------~~~---~~~~~~~~~~~~~~l~~~L~~~--~~-i~~~~~~~~~~~~v~~~~ 363 (421)
T 3l8a_A 319 -------KPW---LEELKTVIEGNIKLVIKELEAK--TK-IKVMEPEGTYLVWLDFSA 363 (421)
T ss_dssp -------HHH---HHHHHHHHHHHHHHHHHHHHHH--CS-CEEECCSBSSEEEEECGG
T ss_pred -------HHH---HHHHHHHHHHHHHHHHHHHHhC--CC-ceEeCCCeeEEEEEeccc
Confidence 112 4555666778888888888876 33 566778899999887754
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-32 Score=282.16 Aligned_cols=286 Identities=12% Similarity=0.065 Sum_probs=226.7
Q ss_pred CCCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCC
Q psy14428 160 DPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGIS 239 (583)
Q Consensus 160 ~~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G 239 (583)
...++.|+|+.+++.. + +++.+.+++.+........+|++ .|..+||++++++++. . ++++|++ |+|
T Consensus 27 ~~~~~~i~l~~~~~~~--~---~~~~v~~a~~~~~~~~~~~~y~~-~~~~~l~~~la~~~g~----~-~~~~i~~--~~g 93 (367)
T 3euc_A 27 PDSHGLVKLDAMENPY--R---LPPALRSELAARLGEVALNRYPV-PSSEALRAKLKEVMQV----P-AGMEVLL--GNG 93 (367)
T ss_dssp CCCTTCEECCSSCCCC--C---CCHHHHHHHHHHHHHHHTTCSCC-CCHHHHHHHHHHHHTC----C-TTCEEEE--EEH
T ss_pred CCCCCeeEccCCCCCC--C---CCHHHHHHHHHHhhhhhhhcCCC-CcHHHHHHHHHHHhCC----C-CcceEEE--cCC
Confidence 3456789999998532 2 45788888877765423567865 5899999999999852 2 6789999 999
Q ss_pred chhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCC
Q psy14428 240 GSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSS 319 (583)
Q Consensus 240 ~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p 319 (583)
+++++.++ +..+..+||+|++++|+|..+...++..|++++.+|+ ++ ++++|++.+++.+.. .+++++++++|
T Consensus 94 ~t~a~~~~---~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~-~~-~~~~d~~~l~~~l~~--~~~~~v~~~~~ 166 (367)
T 3euc_A 94 SDEIISML---ALAAARPGAKVMAPVPGFVMYAMSAQFAGLEFVGVPL-RA-DFTLDRGAMLAAMAE--HQPAIVYLAYP 166 (367)
T ss_dssp HHHHHHHH---HHHTCCTTCEEEEEESCSCCSCHHHHTTTCEEEEEEC-CT-TSCCCHHHHHHHHHH--HCCSEEEEESS
T ss_pred HHHHHHHH---HHHHcCCCCEEEEcCCCHHHHHHHHHHcCCeEEEecC-CC-CCCCCHHHHHHHhhc--cCCCEEEEcCC
Confidence 99999985 4556777999999999999999999999999999999 54 578999999998853 15778888999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhc--CeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEE
Q psy14428 320 HNPTGVDLSEDQWRQLAVVVKQR--HLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTF 397 (583)
Q Consensus 320 ~NPTG~~~s~~~~~~l~~~a~~~--~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~l 397 (583)
|||||.+++.+++++|+++|+++ |+++|+||+|.+|...+ ... . .+..++++++.||||. +++|+|+||+
T Consensus 167 ~nptG~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~---~~~---~-~~~~~~~i~~~s~sK~-~~~G~r~G~~ 238 (367)
T 3euc_A 167 NNPTGNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQES---WMS---R-LTDFGNLLVMRTVSKL-GLAGIRLGYV 238 (367)
T ss_dssp CTTTCCCCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCC---SGG---G-GGTCTTEEEEEECCCT-TSCSCCEEEE
T ss_pred CCCCCCCCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhcccc---hHH---H-HhhCCCEEEEecchhh-cccccCceee
Confidence 99999999999999999999999 99999999999987543 111 1 2456789999999999 8999999999
Q ss_pred EEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHH
Q psy14428 398 SVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTE 477 (583)
Q Consensus 398 v~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~ 477 (583)
++ + +++++++..... .++.+.+.|.++..++++..
T Consensus 239 ~~--~-----~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~~------------------------------------ 273 (367)
T 3euc_A 239 AG--D-----PQWLEQLDKVRP--PYNVNVLTEATALFALEHVA------------------------------------ 273 (367)
T ss_dssp EE--C-----HHHHHHHGGGCC--SSCCCHHHHHHHHHHHTTHH------------------------------------
T ss_pred ee--C-----HHHHHHHHHhCC--CCCCCHHHHHHHHHHhcCHH------------------------------------
Confidence 99 6 578888876543 45688999998888886511
Q ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCC
Q psy14428 478 ILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLS 535 (583)
Q Consensus 478 ~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~ 535 (583)
.++++++++.+.++.+.+.|+++ || +. ..+..|.|.|..++
T Consensus 274 -------------~~~~~~~~~~~~~~~l~~~l~~~--~g-~~-~~~~~~~~~~~~~~ 314 (367)
T 3euc_A 274 -------------VLDEQAAQLRAERSRVAEGMAAH--GG-VT-VFPSAANFLLARVP 314 (367)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHTS--TT-CE-ECCCSSSEEEEECS
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHhC--CC-cE-ECCCCCeEEEEECC
Confidence 13445556677888888888875 33 44 34667788887775
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-32 Score=282.00 Aligned_cols=282 Identities=16% Similarity=0.167 Sum_probs=218.6
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
..++.|+|+.+++.. + +++.+.+++.+.... ...| |..|..+||++++++++ +++++|++ |+|+
T Consensus 30 ~~~~~i~l~~~~~~~--~---~~~~v~~a~~~~~~~--~~~y-~~~~~~~lr~~la~~~~------~~~~~v~~--~~g~ 93 (363)
T 3ffh_A 30 GLTKITKLSSNENPL--G---TSKKVAAIQANSSVE--TEIY-PDGWASSLRKEVADFYQ------LEEEELIF--TAGV 93 (363)
T ss_dssp TCSCCEECSSCSCTT--C---CCHHHHHHHHTCBSC--CCBC-----CHHHHHHHHHHHT------CCGGGEEE--ESSH
T ss_pred CCCceEEccCCCCCC--C---CCHHHHHHHHHHHHH--hhcC-CCcchHHHHHHHHHHhC------CChhhEEE--eCCH
Confidence 345789999998742 2 567888888775532 4455 56789999999999995 56789999 9999
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCC
Q psy14428 241 SGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSH 320 (583)
Q Consensus 241 ~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~ 320 (583)
++++.++ +..+..+||+|++++|+|..+...++..|++++.+|+ ++ ++++|++.+++.+ .++++++++++||
T Consensus 94 t~a~~~~---~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~-~~-~~~~d~~~l~~~i---~~~~~~v~~~~p~ 165 (363)
T 3ffh_A 94 DELIELL---TRVLLDTTTNTVMATPTFVQYRQNALIEGAEVREIPL-LQ-DGEHDLEGMLNAI---DEKTTIVWICNPN 165 (363)
T ss_dssp HHHHHHH---HHHHCSTTCEEEEEESSCHHHHHHHHHHTCEEEEEEC-CT-TSCCCHHHHHHHC---CTTEEEEEEESSC
T ss_pred HHHHHHH---HHHHccCCCEEEEcCCChHHHHHHHHHcCCEEEEecC-CC-CCCcCHHHHHHhc---ccCCCEEEEeCCC
Confidence 9999985 4445677999999999999999999999999999999 54 4789999999887 5678999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEE
Q psy14428 321 NPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVL 400 (583)
Q Consensus 321 NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~ 400 (583)
||||.+++.+++.+|++.|++ |+++|+||+|.+|.+ +. .. +.....+..+++|++.||||.+|++|+|+||+++
T Consensus 166 nptG~~~~~~~l~~l~~~~~~-~~~li~De~~~~~~~-~~--~~-~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~- 239 (363)
T 3ffh_A 166 NPTGNYIELADIQAFLDRVPS-DVLVVLDEAYIEYVT-PQ--PE-KHEKLVRTYKNLIITRTFSKIYGLASARVGYGIA- 239 (363)
T ss_dssp TTTCCCCCHHHHHHHHTTSCT-TSEEEEECTTGGGCS-SC--CC-CCGGGGGTCTTEEEEEESSSTTCCSSCCCEEEEE-
T ss_pred CCcCCCcCHHHHHHHHHhCCC-CcEEEEeCchHhhcC-cc--cc-CHHHHhhcCCCEEEEeechhhhcCchhceeeeec-
Confidence 999999999999999998888 999999999999887 31 11 1122234568999999999999999999999999
Q ss_pred cCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChh-hhhhhhhHHHHHHHHHHHHhh--ccCCCccchhhHHHH
Q psy14428 401 TPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPK-LKAQCDETERIMSQLKILIRG--FYSNPPIHGARIVTE 477 (583)
Q Consensus 401 ~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~l~~~~r~--~~~~~p~~g~~i~~~ 477 (583)
+ +++++++..... ..+.+.+.|.++..++++.. +++..+..++..+.+.+.++. .+...|..|.|+|..
T Consensus 240 -~-----~~~~~~l~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~ 311 (363)
T 3ffh_A 240 -D-----KEIIRQLNIVRP--PFNTTSIGQKLAIEAIKDQAFIGECRTSNANGIKQYEAFAKRFEKVKLYPANGNFVLID 311 (363)
T ss_dssp -C-----HHHHHHHHHTCC--SCCCBHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCTTCEECCCCSSEEEEE
T ss_pred -C-----HHHHHHHHHhCC--CCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhhCCCceECCCCCeEEEEE
Confidence 6 588998887654 46789999999999998643 333333333333334333333 344557778888776
Q ss_pred hcC
Q psy14428 478 ILS 480 (583)
Q Consensus 478 ~l~ 480 (583)
+..
T Consensus 312 ~~~ 314 (363)
T 3ffh_A 312 LGI 314 (363)
T ss_dssp CSS
T ss_pred CCC
Confidence 643
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-32 Score=301.02 Aligned_cols=350 Identities=10% Similarity=-0.007 Sum_probs=230.5
Q ss_pred ccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHH-hCCCCCC---CCCCCeEEEecCCc
Q psy14428 165 KMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLA-YGEDFPA---FKDNRLAIVQGISG 240 (583)
Q Consensus 165 ~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~-~~~~g~~---~~~~~I~i~~t~G~ 240 (583)
.++|+.|.+.. +++.+.+++.+... ..+|+++.|.++||+++++++ .++.+.. .++++|++ |+|+
T Consensus 106 ~i~l~~g~~~~------~~~~~~~al~~~~~---~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~--t~G~ 174 (546)
T 2zy4_A 106 SLSYVRDQLGL------DPAAFLHEMVDGIL---GCNYPVPPRMLNISEKIVRQYIIREMGADAIPSESVNLFA--VEGG 174 (546)
T ss_dssp HHHHHHHTSCC------CHHHHHHHHHHHHH---TCSCCSSSSCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEE--EEHH
T ss_pred hhecccCCCCC------CChHHHHHHHHhhh---cCCCCCCcCCHHHHHHHHHHHHHHhccCCCCCCCcceEEE--ECCH
Confidence 68888888742 33455555544442 367999999999999988765 4333332 25789999 9999
Q ss_pred hhHHHHHHHHHH--HhCCCCCEEEEcCCCChhhHHHHhh--cCCeEEEEecccCC-CCCCChhhHHHHHHcCCCCcEEEE
Q psy14428 241 SGSLRVGTAFLE--RFYPGVKTVYFPTPTWNGHVRFCTD--SRLNVGAYRYFDNK-TNGLDFAGMMEDIKAMPERSILFL 315 (583)
Q Consensus 241 ~~al~l~~~~l~--~~~~~gd~Vlv~~P~y~~~~~~~~~--~G~~~~~v~~~d~~-~~g~d~~~l~~~l~~~~~~~~~i~ 315 (583)
++++.++...+. .++.+||+|++++|+|+.|...+.. .|++++.+++ +++ ++.+|++.+++.+ .+++++++
T Consensus 175 ~eal~~~~~~l~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~~~g~~~~~v~~-~~~~~~~~d~~~l~~~~---~~~~k~v~ 250 (546)
T 2zy4_A 175 TAAMAYIFESLKLNGLLKAGDKVAIGMPVFTPYIEIPELAQYALEEVAINA-DPSLNWQYPDSELDKLK---DPAIKIFF 250 (546)
T ss_dssp HHHHHHHHHHHHHTTSSCTTCEEEEEESCCHHHHHHHHSTTSCCEEEEEEC-BGGGTTBCCHHHHGGGG---STTEEEEE
T ss_pred HHHHHHHHHHhhhhhcCCCCCEEEEeCCCCccHHHHHHHcCCCcEEEEEec-CcccCCCCCHHHHHHhh---CCCCeEEE
Confidence 999998643321 1466799999999999999987554 4789999998 443 3568998887655 56789999
Q ss_pred eCCCCCCCCCCCCHHHHHHHHHHH--HhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCcc
Q psy14428 316 QTSSHNPTGVDLSEDQWRQLAVVV--KQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGER 393 (583)
Q Consensus 316 i~~p~NPTG~~~s~~~~~~l~~~a--~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlR 393 (583)
++|||||||.+++.+++++|+++| ++++++||+||+|.+|.++. .++... ..+++|+++||||++|+||+|
T Consensus 251 l~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~~-----~s~~~~--~~~~~i~~~S~SK~~g~~GlR 323 (546)
T 2zy4_A 251 CVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADDF-----QSLFAI--CPENTLLVYSFSKYFGATGWR 323 (546)
T ss_dssp EESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTTC-----CCHHHH--CGGGEEEEEESTTTTTCGGGC
T ss_pred EECCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhcccC-----cCHHHh--CCCCEEEEEeCccccCCCCcc
Confidence 999999999999999999999999 78999999999999998642 233332 236899999999999999999
Q ss_pred ceEEEEEcCCchhHHHHHHHHHHH------------------------------------HhccccCCChHHHHHH----
Q psy14428 394 VGTFSVLTPTSDETERIMSQLKIL------------------------------------IRGFYSNPPIHGARIV---- 433 (583)
Q Consensus 394 iG~lv~~~p~~~~~~~li~~l~~~------------------------------------~~~~~~~~s~~~q~~~---- 433 (583)
+||+++ +++ ++++++.+. ......++|.+.|.++
T Consensus 324 iG~~~~--~~~----~l~~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~~a 397 (546)
T 2zy4_A 324 LGVVAA--HQQ----NVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFS 397 (546)
T ss_dssp EEEEEE--ESS----CHHHHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHHHHH
T ss_pred eEEEEE--CCH----HHHHHHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHHHHHHHHHH
Confidence 999999 642 255555211 0123457889999874
Q ss_pred -HHHhCChhhhhhhhhHHHHHHHHHHHHhhc----cC-CCccchhhHHHHhcC-----ChhHHHHHHHHHHHHHHHHHHH
Q psy14428 434 -TEILSDPKLKAQCDETERIMSQLKILIRGF----YS-NPPIHGARIVTEILS-----DPKLKAQWFEECKGMSNRISSI 502 (583)
Q Consensus 434 -~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~----~~-~~p~~g~~i~~~~l~-----~~~~~~~~~~~l~~~~~~~~~~ 502 (583)
+.++++. +.+.+..++.+.++.+.+... +. .+|.+|.|+|..+.. +......|... .. ..
T Consensus 398 ~~all~~~--~~~~~~~r~~~~~r~~~l~~~L~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~wl~~------~~-~~ 468 (546)
T 2zy4_A 398 LFALMDEA--DEYKHTLKQLIRRRETTLYRELGMPPLRDENAVDYYTLIDLQDVTAKLYGEAFSEWAVK------QS-ST 468 (546)
T ss_dssp HHHHHCTT--CHHHHHHHHHHHHHHHHHHGGGTSSCCCCTTBCCSEEEEEHHHHHHHHHCHHHHHHHHH------HC-CH
T ss_pred HHHHHhcc--HHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCeeEEEEEEHHHhhcccccHHHHHHhhc------cC-CH
Confidence 3556542 334445555555555543322 22 345566666665421 01112233210 00 11
Q ss_pred HHHHHHHHHhc---CCCCCcccccccccceeecCCChhhhhhhhhhhhHHHHH
Q psy14428 503 REELKSKILDK---GSKKNWDHITNQKGMFCYTGLSASQGMSNRISSIREELK 552 (583)
Q Consensus 503 r~~l~~~L~~~---~~pg~~~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~ 552 (583)
.+.+.+.+.+. ..||..-......-++++...++++++++ +.++++.+.
T Consensus 469 ~~~l~~ll~~~gV~v~pG~~F~~~~~~iRis~~~~~~e~i~~~-~~~l~~~l~ 520 (546)
T 2zy4_A 469 GDMLFRIADETGIVLLPGRGFGSNRPSGRASLANLNEYEYAAI-GRALRKMAD 520 (546)
T ss_dssp HHHHHHHHHHHSCCCEESSCTTCSSCEEEEESSSSCHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHCCEEEeCccccCCCCCeEEEEeccCCHHHHHHH-HHHHHHHHH
Confidence 23344455443 34665222223345777877677777552 233444433
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=299.10 Aligned_cols=289 Identities=15% Similarity=0.083 Sum_probs=211.7
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhc--c-CCCCCCCCCCCC-----HHHHHHHHHHHhCCCCCCCCC-CC
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYE--K-NLDHEYANIGGD-----AKFCKLAAQLAYGEDFPAFKD-NR 231 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~--~-~~~~~Y~~~~G~-----~~Lr~aia~~~~~~~g~~~~~-~~ 231 (583)
..++.|+|+.|.++.. +++.+.+++.+... . ....+|++..|. ++||++||+|++ .+|+.+++ ++
T Consensus 20 ~~~~~i~l~~g~p~~~-----~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~~~~~~lr~aia~~~~-~~g~~~~~~~~ 93 (391)
T 3bwn_A 20 MSDFVVNLDHGDPTAY-----EEYWRKMGDRCTVTIRGCDLMSYFSDMTNLCWFLEPELEDAIKDLHG-VVGNAATEDRY 93 (391)
T ss_dssp TTTSCEECSSCCCGGG-----HHHHHHTGGGSCEEECTTTTCSSCSCTTSSSTTSCHHHHHHHHHHHH-HHCSBCCSSSE
T ss_pred CCCCeeEcCCCCCCCC-----CCHHHHHhHHHHhhcCccchhhcCCCCCCcccccCHHHHHHHHHHHH-hcCCCCCCCCe
Confidence 4567899999998631 23445554422221 1 135679999999 999999999998 57888887 59
Q ss_pred eEEEecCCchhHHHHHHHHHHHhCCCCC----EEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcC
Q psy14428 232 LAIVQGISGSGSLRVGTAFLERFYPGVK----TVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAM 307 (583)
Q Consensus 232 I~i~~t~G~~~al~l~~~~l~~~~~~gd----~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~ 307 (583)
|++ |+|+++++.++. ..++++|| +|++++|+|+.|...++..|++++.+++ |.+ +++
T Consensus 94 i~~--t~G~~~al~~~~---~~l~~~Gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~-d~~--~l~----------- 154 (391)
T 3bwn_A 94 IVV--GTGSTQLCQAAV---HALSSLARSQPVSVVAAAPFYSTYVEETTYVRSGMYKWEG-DAW--GFD----------- 154 (391)
T ss_dssp EEE--EEHHHHHHHHHH---HHHHHTSSSSSEEEEECSSCCTHHHHHHHTTCBTTEEEEE-EST--TCC-----------
T ss_pred EEE--eCChHHHHHHHH---HHhcCCCCCCcceEEEcCCCchhHHHHHHHcCCeEEEecC-CHH--HcC-----------
Confidence 999 999999999863 34455699 9999999999999999999999999998 553 332
Q ss_pred CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccc
Q psy14428 308 PERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNM 387 (583)
Q Consensus 308 ~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~ 387 (583)
.+++++++++|||||||.+++ +|++.+.+++++||+||+|.+ +. ..++. ...+++|+++||||+|
T Consensus 155 ~~~~k~v~l~~p~NPtG~~~~-----~l~~~~~~~~~~ii~De~y~~---~~----~~~l~---~~~~~~i~~~S~SK~~ 219 (391)
T 3bwn_A 155 KKGPYIELVTSPNNPDGTIRE-----TVVNRPDDDEAKVIHDFAYYW---PH----YTPIT---RRQDHDIMLFTFSKIT 219 (391)
T ss_dssp CCSCEEEEEESSCTTTCCCCC-----CCC-----CCCEEEEECTTCS---TT----TSCCC---CCBCCSEEEEEHHHHH
T ss_pred CCCCEEEEECCCCCCCchhHH-----HHHHHhhcCCCEEEEeCCCCC---CC----CCccc---cCCCCeEEEEechhhc
Confidence 246788889999999999997 354422223399999999974 11 11121 1357899999999999
Q ss_pred cccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCC
Q psy14428 388 GLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNP 467 (583)
Q Consensus 388 ~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~ 467 (583)
|+||+|+||+++ ++ +++++++...+.....++|.++|.++..+++++.- .
T Consensus 220 g~~GlRiG~~~~--~~----~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~----------------~-------- 269 (391)
T 3bwn_A 220 GHAGSRIGWALV--KD----KEVAKKMVEYIIVNSIGVSKESQVRTAKILNVLKE----------------T-------- 269 (391)
T ss_dssp SCGGGCEEEEEE--CC----HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHH----------------H--------
T ss_pred CCCccceEEEEe--cC----HHHHHHHHHHhcccccCCCHHHHHHHHHHHhCcch----------------h--------
Confidence 999999999997 54 57999999888777789999999999988865210 0
Q ss_pred ccchhhHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc-------------cccccceeecCC
Q psy14428 468 PIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHI-------------TNQKGMFCYTGL 534 (583)
Q Consensus 468 p~~g~~i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~-------------~~~~g~f~~~~l 534 (583)
+.+. +.+.++++++++.+.++|+.+.+.|++. || +.+. .+++|+|.|..+
T Consensus 270 -----------~~~~---~~~~~~~~~~~~~~~~~~~~l~~~L~~~--~~-~~~~~p~~~~~~f~~~~~~~~g~~~~~~~ 332 (391)
T 3bwn_A 270 -----------CKSE---SESENFFKYGREMMKNRWEKLREVVKES--DA-FTLPKYPEAFCNYFGKSLESYPAFAWLGT 332 (391)
T ss_dssp -----------TTCC---CTTTSHHHHHHHHHHHHHHHHHHHHHTC--SS-EECCCCCCEEETTTTEEECCCCSEEEEEE
T ss_pred -----------cccc---ccHHHHHHHHHHHHHHHHHHHHHHHHhC--CC-cccccCCccccccccccCCCcceEEEecC
Confidence 0000 0012346778888899999999999885 22 2221 256788999887
Q ss_pred Ch
Q psy14428 535 SA 536 (583)
Q Consensus 535 ~~ 536 (583)
+.
T Consensus 333 ~~ 334 (391)
T 3bwn_A 333 KE 334 (391)
T ss_dssp SS
T ss_pred Cc
Confidence 64
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-32 Score=282.62 Aligned_cols=259 Identities=15% Similarity=0.111 Sum_probs=213.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhc
Q psy14428 199 DHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDS 278 (583)
Q Consensus 199 ~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~ 278 (583)
..+|.+..|.++||+++++++. .+++++|++ |+|+++|+.++ +..+..+||+|++++|+|..+...++..
T Consensus 56 ~~~y~~~~g~~~l~~~la~~~~-----~~~~~~v~~--~~g~~~a~~~~---~~~l~~~gd~Vl~~~~~~~~~~~~~~~~ 125 (375)
T 3op7_A 56 KLNYGWIEGSPAFKKSVSQLYT-----GVKPEQILQ--TNGATGANLLV---LYSLIEPGDHVISLYPTYQQLYDIPKSL 125 (375)
T ss_dssp CCSSCCTTCCHHHHHHHHTTSS-----SCCGGGEEE--ESHHHHHHHHH---HHHHCCTTCEEEEEESSCTHHHHHHHHT
T ss_pred CcCCCCCCChHHHHHHHHHHhc-----cCChhhEEE--cCChHHHHHHH---HHHhcCCCCEEEEeCCCchhHHHHHHHc
Confidence 6789999999999999999874 367889999 99999999985 4456777999999999999999999999
Q ss_pred CCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCC
Q psy14428 279 RLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSG 358 (583)
Q Consensus 279 G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~ 358 (583)
|++++.+|+..++++.+|++.+++.+ .++++++++++||||||.+++.+++++|+++|++||++||+||+|.++.++
T Consensus 126 g~~~~~v~~~~~~~~~~d~~~l~~~l---~~~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~De~~~~~~~~ 202 (375)
T 3op7_A 126 GAEVDLWQIEEENGWLPDLEKLRQLI---RPTTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRSFSEL 202 (375)
T ss_dssp TCEEEEEEEEGGGTTEECHHHHHHHC---CTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECCSCCCSSS
T ss_pred CCEEEEEeccccCCCCCCHHHHHHhh---ccCCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccc
Confidence 99999999832334558999998887 567888999999999999999999999999999999999999999999876
Q ss_pred CCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhC
Q psy14428 359 DFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILS 438 (583)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~ 438 (583)
+ ..++. +..+++++++||||.+|++|+|+||+++ + +++++++.........+.+.+.|.++...++
T Consensus 203 ~----~~~~~---~~~~~~i~~~s~sK~~~~~G~r~G~v~~--~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 268 (375)
T 3op7_A 203 D----VPSII---EVYDKGIAVNSLSKTYSLPGIRIGWVAA--N-----HQVTDILRDYRDYTMICAGVFDDLVAQLALA 268 (375)
T ss_dssp C----CCCHH---HHCTTEEEEEESSSSSSCGGGCCEEEEC--C-----HHHHHHHTTTGGGTTSCCCHHHHHHHHHHHH
T ss_pred C----CCchh---hhcCCEEEEeEChhhcCCcccceEEEEe--C-----HHHHHHHHHHHhhhccCCCcHHHHHHHHHHh
Confidence 3 12232 3467899999999999999999999998 6 6899999888777777888888888777664
Q ss_pred ChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q psy14428 439 DPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKN 518 (583)
Q Consensus 439 ~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~ 518 (583)
+ +.+.++++++++.++++.+.+.|++. | .
T Consensus 269 ~------------------------------------------------~~~~~~~~~~~~~~~~~~l~~~l~~~--~-~ 297 (375)
T 3op7_A 269 H------------------------------------------------YQEILERNRHILEENLAILDQWIEEE--P-L 297 (375)
T ss_dssp T------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHC--T-T
T ss_pred c------------------------------------------------cHHHHHHHHHHHHHHHHHHHHHHhhC--C-C
Confidence 3 11224555666677888888888773 2 2
Q ss_pred cccccccccceeecCCC
Q psy14428 519 WDHITNQKGMFCYTGLS 535 (583)
Q Consensus 519 ~~~~~~~~g~f~~~~l~ 535 (583)
+....+++|++.|..++
T Consensus 298 ~~~~~~~~~~~~~~~~~ 314 (375)
T 3op7_A 298 VSYIRPAVVSTSFVKIA 314 (375)
T ss_dssp EEECCCSSSSCEEEEEC
T ss_pred ceEecCCCeEEEeEEcC
Confidence 45567888888886554
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-35 Score=307.21 Aligned_cols=301 Identities=13% Similarity=0.113 Sum_probs=233.2
Q ss_pred CCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchh
Q psy14428 163 PKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSG 242 (583)
Q Consensus 163 ~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~ 242 (583)
++.++|+.|+++. + +++.+.+++.+.+... ..+|++. ..+||+++++++.+.+|+.+++++|++ |+|+++
T Consensus 31 ~~~i~l~~~~~~~--~---~~~~v~~a~~~~~~~~-~~~y~~~--~~~l~~~la~~l~~~~g~~~~~~~v~~--~~g~~~ 100 (392)
T 3b1d_A 31 PQLLPAWIADMDF--E---VMPEVKQAIHDYAEQL-VYGYTYA--SDELLQAVLDWEKSEHQYSFDKEDIVF--VEGVVP 100 (392)
Confidence 3678999998842 2 4467777776666432 4567765 899999999999988888889999999 999999
Q ss_pred HHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCC-CCCCChhhHHHHHHcCCCCcEEEEeCCCCC
Q psy14428 243 SLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNK-TNGLDFAGMMEDIKAMPERSILFLQTSSHN 321 (583)
Q Consensus 243 al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~-~~g~d~~~l~~~l~~~~~~~~~i~i~~p~N 321 (583)
++.++ +..+..+||+|++++|+|..+...++..|++++.+|+.+++ ++.+|++.+++.+.+ .+++++++++|||
T Consensus 101 a~~~~---~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~--~~~~~v~~~~~~n 175 (392)
T 3b1d_A 101 AISIA---IQAFTKEGEAVLINSPVYPPFARSVRLNNRKLVSNSLKEENGLFQIDFEQLENDIVE--NDVKLYLLCNPHN 175 (392)
Confidence 99985 44456679999999999999999999999999999882121 244889998887742 4567888899999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHh-cCcEEEEecCcccccccCccceEEEEE
Q psy14428 322 PTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKE-VGQLCLAQSFSKNMGLYGERVGTFSVL 400 (583)
Q Consensus 322 PTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~-~~~vi~i~S~SK~~~l~GlRiG~lv~~ 400 (583)
|||.+++.+++++|+++|++++++||+||+|.++.+++ ....++..+... .+++++++||||.+|++|+|+||+++
T Consensus 176 ptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g--~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~- 252 (392)
T 3b1d_A 176 PGGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFG--HEHVSFNTVSPDFKDFALVLSSATKTFNIAGTKNSYAII- 252 (392)
Confidence 99999999999999999999999999999999999875 233445444222 57899999999999999999999999
Q ss_pred cCCchhHHHHHHHHHHHHhccc-cCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHhc
Q psy14428 401 TPTSDETERIMSQLKILIRGFY-SNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEIL 479 (583)
Q Consensus 401 ~p~~~~~~~li~~l~~~~~~~~-~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~l 479 (583)
++ +++++.+........ .+++.++|.++..++++. +
T Consensus 253 -~~----~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~--~------------------------------------ 289 (392)
T 3b1d_A 253 -EN----PTLCAQFKHQQLVNNHHEVSSLGYIATETAYRYG--K------------------------------------ 289 (392)
Confidence 64 248888887665553 356888888777776541 0
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCCh
Q psy14428 480 SDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSA 536 (583)
Q Consensus 480 ~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~ 536 (583)
++++++++++.++++.+.+.|++.. || +....++++++.|..++.
T Consensus 290 ----------~~~~~~~~~~~~~~~~l~~~l~~~~-~~-~~~~~~~~~~~~~i~~~~ 334 (392)
T 3b1d_A 290 ----------PWLVALKAVLEENIQFAVEYFAQEA-PR-LKVMKPQGTYLIWLDFSD 334 (392)
Confidence 1134455566677777777776621 32 556678899999987754
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-31 Score=275.18 Aligned_cols=270 Identities=13% Similarity=0.114 Sum_probs=206.1
Q ss_pred CCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCch
Q psy14428 162 HPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGS 241 (583)
Q Consensus 162 ~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~ 241 (583)
+++.+||+.+.+... +++.+.+++.+.... ...|++..+ ++||+++|+++. +++++|++ |+|++
T Consensus 14 g~~~id~~~~~~~~~-----~~~~v~~a~~~~~~~--~~~y~~~~~-~~lr~~la~~~~------~~~~~i~~--t~g~~ 77 (350)
T 3fkd_A 14 SSEIVNFSTTVWTDG-----DKDHLEKHLVENLNC--IRHYPEPDA-GTLRQMLAKRNS------VDNNAILV--TNGPT 77 (350)
T ss_dssp --CCEECSCCSCCCS-----CCHHHHHHHHHTGGG--GGSCCCTTC-HHHHHHHHHHTT------CCGGGEEE--ESHHH
T ss_pred cccEEEccCCCCCCC-----CCHHHHHHHHHhHhH--HhcCCCCcH-HHHHHHHHHHhC------cCHHHEEE--cCCHH
Confidence 467899999986422 567888888776632 567888777 999999999974 56889999 99999
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCC
Q psy14428 242 GSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHN 321 (583)
Q Consensus 242 ~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~N 321 (583)
+++.++ +..+. ||+|++++|+|..+...++..|++++.+|+.+ +..++++ ++++++++++|||
T Consensus 78 ~al~~~---~~~l~--gd~Vi~~~p~~~~~~~~~~~~g~~~~~v~~~~-~~~~~~~-----------~~~~~v~i~~p~n 140 (350)
T 3fkd_A 78 AAFYQI---AQAFR--GSRSLIAIPSFAEYEDACRMYEHEVCFYPSNE-DIGEADF-----------SNMDFCWLCNPNN 140 (350)
T ss_dssp HHHHHH---HHHTT--TCEEEEEESCCHHHHHHHHHTTCEEEEEETTS-CGGGSCC-----------TTCSEEEEESSCT
T ss_pred HHHHHH---HHHHC--CCEEEEeCCCcHHHHHHHHHcCCeEEEEecCC-ccccCcc-----------CCCCEEEEeCCCC
Confidence 999985 44444 89999999999999999999999999999822 2134443 4677888899999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEc
Q psy14428 322 PTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLT 401 (583)
Q Consensus 322 PTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~ 401 (583)
|||.+++.+++++|+++|.++ +||+||+|.++.+++. .. . .. .+..+++++++||||.++++|+|+||+++
T Consensus 141 ptG~~~~~~~l~~l~~~~~~~--~li~Dea~~~~~~~~~--~~-~-~~-~~~~~~~i~~~S~sK~~~~~G~r~G~~~~-- 211 (350)
T 3fkd_A 141 PDGRLLQRTEILRLLNDHPDT--TFVLDQSYVSFTTEEV--IR-P-AD-IKGRKNLVMVYSFSHAYGIPGLRIGYIVA-- 211 (350)
T ss_dssp TTCCCCCHHHHHHHHHHCTTS--EEEEECTTTTSCSSCC--CC-G-GG-GTTCSSEEEEEESHHHHSCGGGCCEEEEC--
T ss_pred CcCCCCCHHHHHHHHHhCCCC--EEEEECchhhhccCcc--hh-h-HH-hhcCCCEEEEecCchhccCcchheEeEEe--
Confidence 999999999999999998765 9999999999988752 11 1 11 34568999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChh-hhhhhhhHHHHHHHHHHHHhh--ccCCCccchhhHHHHh
Q psy14428 402 PTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPK-LKAQCDETERIMSQLKILIRG--FYSNPPIHGARIVTEI 478 (583)
Q Consensus 402 p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~l~~~~r~--~~~~~p~~g~~i~~~~ 478 (583)
+ +++++++..... ..+++.++|.++..++++.. +.++.++..+..+.+.+.++. .+...|..|.|+|+.+
T Consensus 212 ~-----~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~ 284 (350)
T 3fkd_A 212 N-----KDFMKRVAAFST--PWAVNALAIEAAKFILIHPAQFTLPIRKWQRNTVDFITALNRLDGVEVHPSGTTFFLLRL 284 (350)
T ss_dssp C-----HHHHHHHHTTCC--TTCSCHHHHHHHHHHHHCTTTTCCCHHHHHHHHHHHHHHHHHSTTEEECCCSSSEEEEEE
T ss_pred C-----HHHHHHHHHhCC--CCCCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCcEECCCCCcEEEEEC
Confidence 6 689998887653 45789999999999988654 444333333333333333332 3445677788887666
Q ss_pred cC
Q psy14428 479 LS 480 (583)
Q Consensus 479 l~ 480 (583)
..
T Consensus 285 ~~ 286 (350)
T 3fkd_A 285 KK 286 (350)
T ss_dssp SS
T ss_pred CC
Confidence 54
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-30 Score=271.73 Aligned_cols=238 Identities=13% Similarity=0.146 Sum_probs=191.6
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
.+++.|||+.|.+.. + +++.+.+++.+.... ...| +..|..+||+++++++. +++++|++ |+|+
T Consensus 24 ~~~~~idl~~~~~~~--~---~~~~v~~a~~~~~~~--~~~y-~~~~~~~l~~~la~~~~------~~~~~i~~--~~g~ 87 (361)
T 3ftb_A 24 KGRELLDYSSNINPL--G---IPKSFLNNIDEGIKN--LGVY-PDVNYRRLNKSIENYLK------LKDIGIVL--GNGA 87 (361)
T ss_dssp ----CEETTCCCCTT--C---SCHHHHTTHHHHHHG--GGSC-CCTTCHHHHHHHHHHHT------CCSCEEEE--ESSH
T ss_pred CCCCEEEecCCCCCC--C---CCHHHHHHHHHHHHH--hcCC-CCccHHHHHHHHHHHhC------CCcceEEE--cCCH
Confidence 456789999997642 2 457888887777654 4567 55789999999999994 56789999 9999
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCC
Q psy14428 241 SGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSH 320 (583)
Q Consensus 241 ~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~ 320 (583)
++++.++ +..+ |+|++++|+|..+...++..|++++.+|+ +++ .+++++.+++.+ .+ ++++++++||
T Consensus 88 t~al~~~---~~~~----d~vi~~~~~~~~~~~~~~~~g~~~~~~~~-~~~-~~~~~~~l~~~l---~~-~~~v~i~~p~ 154 (361)
T 3ftb_A 88 SEIIELS---ISLF----EKILIIVPSYAEYEINAKKHGVSVVFSYL-DEN-MCIDYEDIISKI---DD-VDSVIIGNPN 154 (361)
T ss_dssp HHHHHHH---HTTC----SEEEEEESCCTHHHHHHHHTTCEEEEEEC-CTT-SCCCHHHHHHHT---TT-CSEEEEETTB
T ss_pred HHHHHHH---HHHc----CcEEEecCChHHHHHHHHHcCCeEEEeec-Ccc-cCCCHHHHHHhc---cC-CCEEEEeCCC
Confidence 9999985 3333 89999999999999999999999999998 443 477888888877 34 7889999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEE
Q psy14428 321 NPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVL 400 (583)
Q Consensus 321 NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~ 400 (583)
||||.+++.+++++|+++|+++|+++|+||+|.++.++. .. +.....+..+++++++||||.+|++|+|+||++.
T Consensus 155 nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~---~~-~~~~~~~~~~~~i~~~s~sK~~~~~G~r~g~~~~- 229 (361)
T 3ftb_A 155 NPNGGLINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGDP---SS-SFVGEIKNYSCLFIIRAMTKFFAMPGIRFGYGIT- 229 (361)
T ss_dssp TTTTBCCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCCT---TS-SSGGGTTTCSSEEEEEESSSTTSCGGGCCEEEEE-
T ss_pred CCCCCCCCHHHHHHHHHHhhhcCCEEEEECcchhhcCCc---cc-chhHhcccCCCEEEEeeChhhcCCCCcceeEEEe-
Confidence 999999999999999999999999999999999998852 11 1112234567899999999999999999999994
Q ss_pred cCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCC
Q psy14428 401 TPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSD 439 (583)
Q Consensus 401 ~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~ 439 (583)
.+ +++++.+..... ..+.+.+.|.++..++++
T Consensus 230 -~~----~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~ 261 (361)
T 3ftb_A 230 -NN----KEIAAKIKAKQN--PWNINCFAEMAAINCLKD 261 (361)
T ss_dssp -SC----HHHHHHHHTTSC--TTCSCHHHHHHHHHTSSC
T ss_pred -CC----HHHHHHHHhhCC--CCCCCHHHHHHHHHHhcC
Confidence 33 578888876544 357888889888888875
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-30 Score=269.98 Aligned_cols=237 Identities=14% Similarity=0.139 Sum_probs=189.5
Q ss_pred CCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchh
Q psy14428 163 PKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSG 242 (583)
Q Consensus 163 ~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~ 242 (583)
.+.|||+.|.+. .+ +++.+.+++.+.... ..+|++ .|..+||+++++++. +++++|++ |+|+++
T Consensus 24 ~~~idl~~~~~~--~~---~~~~v~~a~~~~~~~--~~~y~~-~~~~~l~~~la~~~~------~~~~~v~~--~~g~~~ 87 (364)
T 1lc5_A 24 DQLLDFSANINP--LG---MPVSVKRALIDNLDC--IERYPD-ADYFHLHQALARHHQ------VPASWILA--GNGETE 87 (364)
T ss_dssp GGSEECSSCCCT--TC---CCHHHHHHHHHTGGG--GGSCCC-TTCHHHHHHHHHHHT------SCGGGEEE--ESSHHH
T ss_pred cceEEeccccCC--CC---CCHHHHHHHHHHHHH--hhcCCC-CCHHHHHHHHHHHHC------cCHHHEEE--CCCHHH
Confidence 467999998853 22 457888888777643 456855 589999999999994 45789999 999999
Q ss_pred HHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCC-hhhHHHHHHcCCCCcEEEEeCCCCC
Q psy14428 243 SLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLD-FAGMMEDIKAMPERSILFLQTSSHN 321 (583)
Q Consensus 243 al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d-~~~l~~~l~~~~~~~~~i~i~~p~N 321 (583)
++.++ +..+ + ||+|++++|+|..+...++..|++++.+|+ +++ .+++ ++.+.+.+ .++++++++++|||
T Consensus 88 al~~~---~~~~-~-gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~-~~~-~~~~~l~~~~~~~---~~~~~~v~i~~p~n 157 (364)
T 1lc5_A 88 SIFTV---ASGL-K-PRRAMIVTPGFAEYGRALAQSGCEIRRWSL-REA-DGWQLTDAILEAL---TPDLDCLFLCTPNN 157 (364)
T ss_dssp HHHHH---HHHH-C-CSEEEEEESCCTHHHHHHHHTTCEEEEEEC-CGG-GTTCCCTTHHHHC---CTTCCEEEEESSCT
T ss_pred HHHHH---HHHc-C-CCeEEEeCCCcHHHHHHHHHcCCeEEEEeC-Ccc-cccchhHHHHHhc---cCCCCEEEEeCCCC
Confidence 99986 3344 4 799999999999999999999999999998 432 2344 35454443 45678888999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEE-EE
Q psy14428 322 PTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFS-VL 400 (583)
Q Consensus 322 PTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv-~~ 400 (583)
|||.+++.+++++|+++|+++|++||+||+|.++.+++ .+... +.+..++++++.||||.+|++|+|+||++ +
T Consensus 158 ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~--~~~~~---~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~- 231 (364)
T 1lc5_A 158 PTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHE--TGFIP---ALKDNPHIWVLRSLTKFYAIPGLRLGYLVNS- 231 (364)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTC--CCSGG---GCTTCTTEEEEEESTTTTTCTTTCCEEEECC-
T ss_pred CCCCCCCHHHHHHHHHHhhhcCcEEEEECcChhhccCc--cchhh---HhccCCCEEEEEECchhhcCCccceEEEEEC-
Confidence 99999999999999999999999999999999998753 12111 12345789999999999999999999999 7
Q ss_pred cCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCC
Q psy14428 401 TPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSD 439 (583)
Q Consensus 401 ~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~ 439 (583)
+ +++++++..... ..++|.++|.++..++++
T Consensus 232 -~-----~~~~~~l~~~~~--~~~~~~~~~~~~~~~l~~ 262 (364)
T 1lc5_A 232 -D-----DAAMARMRRQQM--PWSVNALAALAGEVALQD 262 (364)
T ss_dssp -C-----HHHHHHHHHHSC--TTCSCHHHHHHHHHGGGC
T ss_pred -C-----HHHHHHHHHhCC--CCCCCHHHHHHHHHHHhC
Confidence 5 578888876543 457888999988888865
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-30 Score=272.92 Aligned_cols=242 Identities=15% Similarity=0.126 Sum_probs=193.5
Q ss_pred ccccCCccccCCCCCCCCChHHHHHHHHHhccC--CCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchh
Q psy14428 165 KMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKN--LDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSG 242 (583)
Q Consensus 165 ~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~--~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~ 242 (583)
.|||+.|.+. .+ +++.+.+++.+.+... ...+|++..+ .+||+++++++.+.+|..+++++|++ |+|+++
T Consensus 32 ~idl~~~~~~--~~---~~~~v~~a~~~~~~~~~~~~~~y~~~~~-~~l~~~la~~l~~~~g~~~~~~~v~~--~~G~~~ 103 (369)
T 3cq5_A 32 DIRLNTNENP--YP---PSEALVADLVATVDKIATELNRYPERDA-VELRDELAAYITKQTGVAVTRDNLWA--ANGSNE 103 (369)
T ss_dssp SEECSSCCCC--SC---CCHHHHHHHHHHHHHHGGGTTSCCCTTC-HHHHHHHHHHHHHHHCCCCCGGGEEE--ESHHHH
T ss_pred ceeccCCCCC--CC---CCHHHHHHHHHHHHhcccccccCCCccH-HHHHHHHHHhhhhcccCCCChHhEEE--CCChHH
Confidence 4899988873 22 4577888777666431 2567877666 79999999999887778888999999 999999
Q ss_pred HHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCC
Q psy14428 243 SLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNP 322 (583)
Q Consensus 243 al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NP 322 (583)
++.++ +..+..+||+|++++|+|..+...++..|++++.+|. ++ ++++|++.+++.+.. .+++++++++||||
T Consensus 104 al~~~---~~~l~~~gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~-~~-~~~~d~~~l~~~i~~--~~~~~v~~~~~~np 176 (369)
T 3cq5_A 104 ILQQL---LQAFGGPGRTALGFQPSYSMHPILAKGTHTEFIAVSR-GA-DFRIDMDVALEEIRA--KQPDIVFVTTPNNP 176 (369)
T ss_dssp HHHHH---HHHHCSTTCEEEEEESSCTHHHHHHHHTTCEEEEEEC-CT-TSSCCHHHHHHHHHH--HCCSEEEEESSCTT
T ss_pred HHHHH---HHHhcCCCCEEEEcCCChHHHHHHHHHcCCEEEEecC-Cc-CCCCCHHHHHHHhhc--cCCCEEEEeCCCCC
Confidence 99985 4456677999999999999999999999999999997 43 468999999998853 15677888999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcC-cEEEEecCcccccccCccceEEEEEc
Q psy14428 323 TGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVG-QLCLAQSFSKNMGLYGERVGTFSVLT 401 (583)
Q Consensus 323 TG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~-~vi~i~S~SK~~~l~GlRiG~lv~~~ 401 (583)
||.+++.+++.+|++.| +++||+||+|.++.++. +. ..+.+..+ +++++.||||.+|++|+|+||+++
T Consensus 177 tG~~~~~~~l~~l~~~~---~~~li~De~~~~~~~~~---~~---~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~-- 245 (369)
T 3cq5_A 177 TGDVTSLDDVERIINVA---PGIVIVDEAYAEFSPSP---SA---TTLLEKYPTKLVVSRTMSKAFDFAGGRLGYFVA-- 245 (369)
T ss_dssp TCCCCCHHHHHHHHHHC---SSEEEEECTTGGGCCSC---CG---GGGTTTCTTTEEEEEESSSTTSCGGGCCEEEEE--
T ss_pred CCCCCCHHHHHHHHHhC---CCEEEEECCchhhcCCc---ch---HHHHhhCCCCEEEEEechHhcCCcccceEEEEe--
Confidence 99999998888877755 49999999999988642 11 11123345 899999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCC
Q psy14428 402 PTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSD 439 (583)
Q Consensus 402 p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~ 439 (583)
+ +++++++..... .++++.+.|.++..++++
T Consensus 246 ~-----~~~~~~l~~~~~--~~~~~~~~~~a~~~~l~~ 276 (369)
T 3cq5_A 246 N-----PAFIDAVMLVRL--PYHLSALSQAAAIVALRH 276 (369)
T ss_dssp C-----THHHHHHHTTSC--TTCSCHHHHHHHHHHHHT
T ss_pred C-----HHHHHHHHHcCC--CCCCCHHHHHHHHHHhcC
Confidence 6 368888876543 346888888888887764
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-30 Score=268.97 Aligned_cols=268 Identities=15% Similarity=0.171 Sum_probs=202.8
Q ss_pred CCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchh
Q psy14428 163 PKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSG 242 (583)
Q Consensus 163 ~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~ 242 (583)
++.++|+.+.+.. + +++.+.+++.+.........|++ .|.++||+++|+++++. .+++++|++ |+|+++
T Consensus 19 ~~~i~l~~~~~~~--~---~~~~v~~a~~~~~~~~~~~~y~~-~~~~~lr~~la~~~~~~---~~~~~~v~~--~~G~~~ 87 (335)
T 1uu1_A 19 RDKTYLALNENPF--P---FPEDLVDEVFRRLNSDALRIYYD-SPDEELIEKILSYLDTD---FLSKNNVSV--GNGADE 87 (335)
T ss_dssp CCSEEESSCCCSS--C---CCHHHHHHHHHTCCGGGGGSCCC-SSCHHHHHHHHHHHTCS---SCCGGGEEE--ESSHHH
T ss_pred CcceECCCCCCCC--C---CCHHHHHHHHHHhhhhhhhcCCC-CchHHHHHHHHHHcCCC---CCCHHHEEE--cCChHH
Confidence 3568898888631 1 45788888887763322456755 47999999999999754 567899999 999999
Q ss_pred HHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCC
Q psy14428 243 SLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNP 322 (583)
Q Consensus 243 al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NP 322 (583)
++.++ +..+ ||+|+++ |+|..+...++..|++++.+|+ ++ ++++|++.+ ++++++++++||||
T Consensus 88 al~~~---~~~~---gd~Vl~~-p~y~~~~~~~~~~g~~~~~v~~-~~-~~~~d~~~l--------~~~~~v~l~~p~np 150 (335)
T 1uu1_A 88 IIYVM---MLMF---DRSVFFP-PTYSCYRIFAKAVGAKFLEVPL-TK-DLRIPEVNV--------GEGDVVFIPNPNNP 150 (335)
T ss_dssp HHHHH---HHHS---SEEEECS-SSCHHHHHHHHHHTCEEEECCC-CT-TSCCCCCCC--------CTTEEEEEESSCTT
T ss_pred HHHHH---HHHh---CCcEEEC-CCcHHHHHHHHHcCCeEEEecc-CC-CCCCCHHHc--------CCCCEEEEeCCCCC
Confidence 99985 3444 7999999 9999999999999999999998 43 367787766 35788888999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcC
Q psy14428 323 TGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTP 402 (583)
Q Consensus 323 TG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p 402 (583)
||.+++.+++++|+++| + +||+||+|.++.++. ... +.+..+++++++||||.+|++|+|+||+++ +
T Consensus 151 tG~~~~~~~l~~l~~~~---~-~li~De~~~~~~~~~----~~~---~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~--~ 217 (335)
T 1uu1_A 151 TGHVFEREEIERILKTG---A-FVALDEAYYEFHGES----YVD---FLKKYENLAVIRTFSKAFSLAAQRVGYVVA--S 217 (335)
T ss_dssp TCCCCCHHHHHHHHHTT---C-EEEEECTTHHHHCCC----CGG---GGGTCSSEEEEEESTTTTTCGGGCCEEEEE--C
T ss_pred CCCCCCHHHHHHHHHhC---C-EEEEECcchhhcchh----HHH---HhhhCCCEEEEecchhhcCCcccCeEEEEe--C
Confidence 99999999999999887 7 899999999876431 111 124457899999999999999999999999 6
Q ss_pred CchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCCh-hhhhhhhhHHHHHHHHHHHHhh-ccCCCccchhhHHHHh
Q psy14428 403 TSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDP-KLKAQCDETERIMSQLKILIRG-FYSNPPIHGARIVTEI 478 (583)
Q Consensus 403 ~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~r~-~~~~~p~~g~~i~~~~ 478 (583)
+++++++..... ..++|.++|.++..++++. ++++..+..++..+.+.+.++. .+...|.+|.|+|..+
T Consensus 218 -----~~~~~~l~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~ 288 (335)
T 1uu1_A 218 -----EKFIDAYNRVRL--PFNVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREMGYRITDSRGNFVFVFM 288 (335)
T ss_dssp -----HHHHHHHHHHSC--TTCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHTCCBCCCCSSEEEEEC
T ss_pred -----HHHHHHHHHhcC--CCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHCCcEEcCCCCeEEEEEC
Confidence 578888887643 2588999999999999874 2333333333333333222222 3444566778877654
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-29 Score=259.94 Aligned_cols=230 Identities=17% Similarity=0.173 Sum_probs=185.2
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
..++.|+|+.++.. .+ +++.+.+++.+.... ..+| |..|.++||+++|++++ +++++|++ |+|+
T Consensus 14 ~~~~~i~l~~n~~~--~~---~~~~v~~a~~~~~~~--~~~y-~~~~~~~lr~~la~~~~------~~~~~i~~--t~G~ 77 (337)
T 3p1t_A 14 AAAQAVCLAFNENP--EA---VEPRVQAAIAAAAAR--INRY-PFDAEPRVMRKLAEHFS------CPEDNLML--VRGI 77 (337)
T ss_dssp CCCCCEECSSCCCC--SC---CCHHHHHHHHHHGGG--TTSC-CTTHHHHHHHHHHHHHT------SCGGGEEE--ESHH
T ss_pred CCCCceEeeCCCCC--CC---CCHHHHHHHHHhhhh--hccC-CCCchHHHHHHHHHHhC------cCHHHEEE--eCCH
Confidence 34568999988752 22 567888888887654 5668 56799999999999984 56789999 9999
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCC
Q psy14428 241 SGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSH 320 (583)
Q Consensus 241 ~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~ 320 (583)
++++.++ +..+ +||+|++++|+|..+...++..|++++.+|+ ++ ++++|++.+++. .+++++++++||
T Consensus 78 ~~~l~~~---~~~~--~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~-~~-~~~~d~~~l~~~-----~~~~~v~i~~p~ 145 (337)
T 3p1t_A 78 DECFDRI---SAEF--SSMRFVTAWPGFDGYRARIAVSGLRHFEIGL-TD-DLLLDPNDLAQV-----SRDDCVVLANPS 145 (337)
T ss_dssp HHHHHHH---HHHS--TTSEEEEESSSCSHHHHHHTTSCCEEEEECB-CT-TSSBCHHHHTTC-----CTTEEEEEESSC
T ss_pred HHHHHHH---HHhc--CCCeEEEeCCCcHHHHHHHHHcCCEEEEecC-CC-CCCCCHHHHHhh-----cCCCEEEEeCCC
Confidence 9999985 3344 5999999999999999999999999999998 44 478898887652 467899999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEE
Q psy14428 321 NPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVL 400 (583)
Q Consensus 321 NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~ 400 (583)
||||.+++.+++.+|+ +++++ +|+||+|.+|.+.+. .. ....+++++++||||++|++|+|+||+++
T Consensus 146 nptG~~~~~~~l~~l~---~~~~~-~ivDea~~~~~~~~~--~~------~~~~~~~i~~~S~sK~~g~~G~r~G~~~~- 212 (337)
T 3p1t_A 146 NPTGQALSAGELDQLR---QRAGK-LLIDETYVDYSSFRA--RG------LAYGENELVFRSFSKSYGLAGLRLGALFG- 212 (337)
T ss_dssp TTTCCCCCHHHHHHHH---HHCSE-EEEECTTGGGSSCSS--SC------CCCBTTEEEEEESSSTTCCTTTCCEEEEC-
T ss_pred CCCCCCCCHHHHHHHH---HhCCc-EEEECCChhhccccc--cc------cccCCCEEEEeeCchhccCcchheEEEEe-
Confidence 9999999999887765 56676 555999999876541 11 12357899999999999999999999998
Q ss_pred cCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCC
Q psy14428 401 TPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSD 439 (583)
Q Consensus 401 ~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~ 439 (583)
+ +++++.+.+.. ...+++.+.|.++..++++
T Consensus 213 -~-----~~~~~~l~~~~--~~~~~~~~~~~a~~~~l~~ 243 (337)
T 3p1t_A 213 -P-----SELIAAMKRKQ--WFCNVGTLDLHALEAALDN 243 (337)
T ss_dssp -C-----HHHHHHHHTTS--CTTCSCHHHHHHHHHHHTC
T ss_pred -C-----HHHHHHHHhhc--CCCCCCHHHHHHHHHHhCC
Confidence 7 57888887653 3467888999988888876
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-29 Score=263.53 Aligned_cols=273 Identities=15% Similarity=0.183 Sum_probs=204.7
Q ss_pred CCCccccCCccccCCCCCCCCChHHHHHHHHHhccC--CCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCC
Q psy14428 162 HPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKN--LDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGIS 239 (583)
Q Consensus 162 ~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~--~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G 239 (583)
.++.|+|+.++++. + +++.+.+++.+..... ....|++ .+..+||+++|++++ +++++|++ |+|
T Consensus 25 ~~~~i~l~~~~~~~--~---~~~~v~~a~~~~~~~~~~~~~~y~~-~~~~~lr~~la~~~g------~~~~~i~~--t~g 90 (360)
T 3hdo_A 25 IASWIKLNTNENPY--P---PSPEVVKAILEELGPDGAALRIYPS-ASSQKLREVAGELYG------FDPSWIIM--ANG 90 (360)
T ss_dssp CTTSEECSSCCCSS--C---CCHHHHHHHHHHHTTTCGGGGSCCC-SSCHHHHHHHHHHHT------CCGGGEEE--ESS
T ss_pred ccceeeccCCCCCC--C---CCHHHHHHHHHHHhcccchhhcCCC-CchHHHHHHHHHHhC------cCcceEEE--cCC
Confidence 45689999998742 2 5688888888877542 1356754 467999999999994 57889999 999
Q ss_pred chhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCC
Q psy14428 240 GSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSS 319 (583)
Q Consensus 240 ~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p 319 (583)
+++++.++ +..+..+||+|++++|+|..+...++..|++++.+|+ +++ +.+ +.+++ . .+++++++++|
T Consensus 91 ~~~al~~~---~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~-~~~-~~~--~~l~~----~-~~~~~v~i~~p 158 (360)
T 3hdo_A 91 SDEVLNNL---IRAFAAEGEEIGYVHPSYSYYGTLAEVQGARVRTFGL-TGD-FRI--AGFPE----R-YEGKVFFLTTP 158 (360)
T ss_dssp HHHHHHHH---HHHHCCTTCEEEEESSSCTHHHHHHHHHTCEEEEECB-CTT-SSB--TTCCS----S-BCSSEEEEESS
T ss_pred HHHHHHHH---HHHHhCCCCEEEEcCCChHHHHHHHHHCCCEEEEeeC-CCC-CCH--HHHHh----h-cCCCEEEEeCC
Confidence 99999985 4456777999999999999999999999999999998 442 333 33322 1 23458899999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEE
Q psy14428 320 HNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSV 399 (583)
Q Consensus 320 ~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~ 399 (583)
|||||.+++.+++.+| |++++++||+||+|.+|...+ ..++ .+..+++++++||||.+|++|+|+||+++
T Consensus 159 ~nptG~~~~~~~l~~l---~~~~~~~li~De~~~~~~~~~----~~~~---~~~~~~~i~~~s~sK~~g~~G~r~G~~~~ 228 (360)
T 3hdo_A 159 NAPLGPSFPLEYIDEL---ARRCAGMLVLDETYAEFAESN----ALEL---VRRHENVVVTRTLSKSYSLAGMRIGLAIA 228 (360)
T ss_dssp CTTTCCCCCHHHHHHH---HHHBSSEEEEECTTGGGSSCC----CTHH---HHHCSSEEEEEESTTTTSCTTSCCEEEEC
T ss_pred CCCCCCCcCHHHHHHH---HHHCCCEEEEECChHhhCCcc----hhHH---hccCCCEEEEecchHhhcCCccceeeEee
Confidence 9999999999876555 567899999999999974321 2222 24568999999999999999999999998
Q ss_pred EcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChh-hhhhhhhHHHHHHHHHHHHhh-ccCCCccchhhHHHH
Q psy14428 400 LTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPK-LKAQCDETERIMSQLKILIRG-FYSNPPIHGARIVTE 477 (583)
Q Consensus 400 ~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~l~~~~r~-~~~~~p~~g~~i~~~ 477 (583)
+ +++++.+..... .++.+.+.|.++..++++.. +++..+..++..+.+.+.++. .+...|..|.|+|+.
T Consensus 229 --~-----~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~ 299 (360)
T 3hdo_A 229 --R-----PEVIAALDKIRD--HYNLDRLAQAACVAALRDQAYLSECCRRIRETREWFTTELRSIGYDVIPSQGNYLFAT 299 (360)
T ss_dssp --C-----HHHHHHHHHHSC--SCCSCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCSSSEEEEE
T ss_pred --C-----HHHHHHHHHhCC--CCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEcCCCccEEEEE
Confidence 6 588998887654 36789999999999998643 333333333333333333332 344557778888875
Q ss_pred hc
Q psy14428 478 IL 479 (583)
Q Consensus 478 ~l 479 (583)
+.
T Consensus 300 ~~ 301 (360)
T 3hdo_A 300 PP 301 (360)
T ss_dssp CT
T ss_pred CC
Confidence 54
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.5e-32 Score=288.75 Aligned_cols=290 Identities=12% Similarity=0.020 Sum_probs=215.3
Q ss_pred CCccccCCccccCCCCCCCCChHHHHHHHHHhc-cC-CCCCCCCCC-C---CHHHHHHHHHHHhCCCCCCCCCCCeEEEe
Q psy14428 163 PKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYE-KN-LDHEYANIG-G---DAKFCKLAAQLAYGEDFPAFKDNRLAIVQ 236 (583)
Q Consensus 163 ~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~-~~-~~~~Y~~~~-G---~~~Lr~aia~~~~~~~g~~~~~~~I~i~~ 236 (583)
...|+|+.|+++.. +++.+.+++.+.+. .+ ....|++.. | .++||++||+|+++.+++.+++++|++
T Consensus 56 ~~~i~l~~g~~~~~-----~~~~v~~a~~~~l~~~~~~~~~Y~~~~~G~~~~~~lr~aia~~~~~~~~~~~~~~~iv~-- 128 (427)
T 2hox_A 56 GCSADVASGDGLFL-----EEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVF-- 128 (427)
T ss_dssp TCCEECCSCCCGGG-----HHHHTTSHHHHCEEECTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEE--
T ss_pred CceEEecCcCCCCC-----CCHHHHHhHHhhhhcCCcccccCCCCCCCccchHHHHHHHHHHHHHhCCcCCCCCEEEE--
Confidence 46789999998521 34566777766653 22 123599988 9 999999999999887777789999999
Q ss_pred cCCchhHHHHHHHHHHHh--------CCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCC
Q psy14428 237 GISGSGSLRVGTAFLERF--------YPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMP 308 (583)
Q Consensus 237 t~G~~~al~l~~~~l~~~--------~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~ 308 (583)
|+|+++++.++ +..+ .++||.|++++|+|+.|...++..|++++.+.+ |++.+++.+ .
T Consensus 129 t~G~~~al~~~---~~~l~~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~g~~~~~~~~--------d~~~l~~~~---~ 194 (427)
T 2hox_A 129 GVGVTQLIHGL---VISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKGYVWAG--------NAANYVNVS---N 194 (427)
T ss_dssp ESHHHHHHHHH---HHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCBTTEEEEE--------EGGGGTTCS---C
T ss_pred eCCHHHHHHHH---HHHHhhccccccCCCCCEEEEeCCCcccHHHHHHHcCCeeeeecC--------CHHHHHHhh---c
Confidence 99999999995 4455 677999999999999999999999998875544 555665544 4
Q ss_pred CCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCccccc
Q psy14428 309 ERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMG 388 (583)
Q Consensus 309 ~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~ 388 (583)
+++++++++|||||||.+++ +.+ + ++.+|.|++|.+ + ..++..+ . .+++|+++||||++|
T Consensus 195 ~~~k~v~l~~p~NPtG~~~~-~~l-------~--~~~~i~d~~~~~----~----~~s~~~~-~-~~~~i~~~S~SK~~g 254 (427)
T 2hox_A 195 PEQYIEMVTSPNNPEGLLRH-AVI-------K--GCKSIYDMVYYW----P----HYTPIKY-K-ADEDILLFTMSKFTG 254 (427)
T ss_dssp GGGEEEEEESSCTTTCCCCC-CSS-------T--TCEEEEECTTCS----T----TTSCCCS-C-BCCSEEEEEHHHHTS
T ss_pred CCceEEEEcCCCCCcccccH-HHH-------c--CCCEEEeecccC----C----CCCcccc-C-CCceEEEEeChhcCC
Confidence 56789999999999999999 422 2 456777777643 1 1122222 1 578999999999999
Q ss_pred ccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCc
Q psy14428 389 LYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPP 468 (583)
Q Consensus 389 l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p 468 (583)
++|+|+||+++ ++ +++++++.+.......+++.+.|.++..+|++.. .. +. .
T Consensus 255 ~~G~RiG~~~~--~~----~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~--~~----------l~-~--------- 306 (427)
T 2hox_A 255 HSGSRFGWALI--KD----ESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVV--AM----------VK-T--------- 306 (427)
T ss_dssp CGGGCCEEEEE--CC----HHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHH--HH----------HH-H---------
T ss_pred CCCceEEEEEE--CC----HHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcch--hh----------hc-c---------
Confidence 99999999999 75 4799999998877778999999999988886421 00 00 0
Q ss_pred cchhhHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CC-------CCC---cccccccccceeecCCCh
Q psy14428 469 IHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDK-GS-------KKN---WDHITNQKGMFCYTGLSA 536 (583)
Q Consensus 469 ~~g~~i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~-~~-------pg~---~~~~~~~~g~f~~~~l~~ 536 (583)
.. +.|.++++++++++.++|+.+.+.|++. +. |.. +.+..+++|+|.|..++.
T Consensus 307 --------~~-------~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~ 370 (427)
T 2hox_A 307 --------QK-------GTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEW 370 (427)
T ss_dssp --------HT-------TSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECS
T ss_pred --------cc-------chhHHHHHHHHHHHHHHHHHHHHHHHhCcCccccccccccccccccccCCCCceEEEEECCC
Confidence 00 0122346777888889999999999875 21 211 344568889999988764
|
| >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.7e-27 Score=250.08 Aligned_cols=285 Identities=12% Similarity=0.032 Sum_probs=209.1
Q ss_pred CCCccccCCccccCCCCCCCCChHHHHHHHHHhccC--CCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCC
Q psy14428 162 HPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKN--LDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGIS 239 (583)
Q Consensus 162 ~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~--~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G 239 (583)
++..+||+.|.+. +.+ +++.+.+++.+.+... ....|.+..|.+++++++++++.+.+|. ++|++ |+|
T Consensus 42 g~~~idl~~~~~~---~~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~----~~v~~--~~g 111 (398)
T 3a2b_A 42 GRRVLMFGSNSYL---GLT-TDTRIIKAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKLSAYVGK----EAAIL--FST 111 (398)
T ss_dssp TEEEEECSCSCTT---CGG-GCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTC----SEEEE--ESS
T ss_pred CceEEEeeccccc---CCC-CCHHHHHHHHHHHHHcCCCCCCcCcccCCcHHHHHHHHHHHHHhCC----CcEEE--ECC
Confidence 3467899998761 111 4577888877766541 1234667889889999999888776553 58999 999
Q ss_pred chhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCC-CcEEEEeCC
Q psy14428 240 GSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPE-RSILFLQTS 318 (583)
Q Consensus 240 ~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~-~~~~i~i~~ 318 (583)
+++|+.++ +..+..+||.|++++|+|..+...++..|++++.+|+ +|++.+++.+....+ +++++++++
T Consensus 112 gt~a~~~~---~~~~~~~gd~V~~~~p~~~~~~~~~~~~g~~~~~v~~-------~d~~~l~~~l~~~~~~~~~~v~~~~ 181 (398)
T 3a2b_A 112 GFQSNLGP---LSCLMGRNDYILLDERDHASIIDGSRLSFSKVIKYGH-------NNMEDLRAKLSRLPEDSAKLICTDG 181 (398)
T ss_dssp HHHHHHHH---HHHSSCTTCEEEEETTCCHHHHHHHHHSSSEEEEECT-------TCHHHHHHHHHTSCSSSCEEEEEES
T ss_pred HHHHHHHH---HHHHhCCCCEEEECCccCHHHHHHHHHcCCceEEeCC-------CCHHHHHHHHHhhccCCceEEEEeC
Confidence 99999985 4556777999999999999999999999999998876 278899888865332 688999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCc-EEEEecCcccccccCccceEE
Q psy14428 319 SHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQ-LCLAQSFSKNMGLYGERVGTF 397 (583)
Q Consensus 319 p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~-vi~i~S~SK~~~l~GlRiG~l 397 (583)
||||||.+++ +++|+++|++++++||+||+|.++.++. ...++....+..++ +++++||||.++++| ||+
T Consensus 182 ~~nptG~~~~---~~~l~~~~~~~~~~li~De~~~~~~~~~---~~~~~~~~~~~~~~~di~~~s~sK~~~~~G---G~~ 252 (398)
T 3a2b_A 182 IFSMEGDIVN---LPELTSIANEFDAAVMVDDAHSLGVIGH---KGAGTASHFGLNDDVDLIMGTFSKSLASLG---GFV 252 (398)
T ss_dssp BCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSG---GGCCHHHHHTCGGGCSEEEEESSSTTCSSC---EEE
T ss_pred CCCCCCCccC---HHHHHHHHHHcCcEEEEECCCcccccCC---CCCchHhhcCCCcCCeEEEecccccccCCC---cEE
Confidence 9999999997 6788999999999999999999988753 11223222222345 699999999999888 999
Q ss_pred EEEcCCchhHHHHHHHHHHH-HhccccCCChHHHHH-HHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHH
Q psy14428 398 SVLTPTSDETERIMSQLKIL-IRGFYSNPPIHGARI-VTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIV 475 (583)
Q Consensus 398 v~~~p~~~~~~~li~~l~~~-~~~~~~~~s~~~q~~-~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~ 475 (583)
++ + +++++.+... ......+.+.+.|.+ +...+++
T Consensus 253 ~~--~-----~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~l~~------------------------------------ 289 (398)
T 3a2b_A 253 AG--D-----ADVIDFLKHNARSVMFSASMTPASVASTLKALEI------------------------------------ 289 (398)
T ss_dssp EE--C-----HHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHH------------------------------------
T ss_pred Ee--C-----HHHHHHHHHhcccceecCCCCHHHHHHHHHHHHH------------------------------------
Confidence 99 6 5788888774 334445556666654 3344421
Q ss_pred HHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCCh
Q psy14428 476 TEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSA 536 (583)
Q Consensus 476 ~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~ 536 (583)
+ ++++++++++.++++.+.+.|++.+ +....++ |.|.|..++.
T Consensus 290 ------------~-~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~-g~~~~~~~~~ 332 (398)
T 3a2b_A 290 ------------I-QNEPEHIEKLWKNTDYAKAQLLDHG----FDLGATE-SPILPIFIRS 332 (398)
T ss_dssp ------------H-HHCTHHHHHHHHHHHHHHHHHHHTT----CCBCSCC-SSEEEEECCC
T ss_pred ------------H-hhCHHHHHHHHHHHHHHHHHHHhcC----CCcCCCC-CCEEEEEcCC
Confidence 0 1234456667788888888888763 3344444 6788877753
|
| >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=5.3e-25 Score=233.52 Aligned_cols=229 Identities=12% Similarity=0.051 Sum_probs=179.9
Q ss_pred ccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCH---HHHHHHHHHHhCCCCCCCCCCCeEEEecCCch
Q psy14428 165 KMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDA---KFCKLAAQLAYGEDFPAFKDNRLAIVQGISGS 241 (583)
Q Consensus 165 ~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~---~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~ 241 (583)
...++.++|+.. .+++..+.+.++..........+.|++ .|.+ +||++++++++. +++++ ++|++
T Consensus 20 ~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~Y~~-~~~~~~~~l~~~ia~~~g~--------~~~i~--~~~g~ 87 (404)
T 1e5e_A 20 DQFGAAIPPIYQ-TSTFVFDNCQQGGNRFAGQESGYIYTR-LGNPTVSNLEGKIAFLEKT--------EACVA--TSSGM 87 (404)
T ss_dssp CTTCCSSCCCCC-CSBCCCSSHHHHHHHHTTSSCSCCBTT-TCCHHHHHHHHHHHHHHTC--------SEEEE--ESSHH
T ss_pred CCCCCcCCCCcC-CCccccCCHHHHHHhhcCCcCCccccC-CcChHHHHHHHHHHHHhCC--------CcEEE--eCChH
Confidence 356888888754 334455666666543222223567877 6777 999999999853 36677 77888
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEcCCCChhhHH----HHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeC
Q psy14428 242 GSLRVGTAFLERFYPGVKTVYFPTPTWNGHVR----FCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQT 317 (583)
Q Consensus 242 ~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~----~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~ 317 (583)
+|+.++ +..+..+||+|++++|+|..+.. .++..|++++.+|+ + |++.+++.+ .+++++++++
T Consensus 88 ~ai~~~---~~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~-~------d~~~l~~~i---~~~t~~v~l~ 154 (404)
T 1e5e_A 88 GAIAAT---VLTILKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINT-A------IPGEVKKHM---KPNTKIVYFE 154 (404)
T ss_dssp HHHHHH---HHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECT-T------STTHHHHHC---CTTEEEEEEE
T ss_pred HHHHHH---HHHHhCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECC-C------CHHHHHHhc---CCCCcEEEEE
Confidence 999885 44456779999999999999988 78889999999987 2 677888777 5678999999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHh-cCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccc-e
Q psy14428 318 SSHNPTGVDLSEDQWRQLAVVVKQ-RHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERV-G 395 (583)
Q Consensus 318 ~p~NPTG~~~s~~~~~~l~~~a~~-~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRi-G 395 (583)
+||||||.+++ +++|+++|++ +|++||+||+|.++.+.. ++ ..++++++.|+||.|+++|+|+ |
T Consensus 155 ~p~NptG~v~~---l~~i~~la~~~~~~~li~De~~~~~~~~~------~~-----~~~~di~~~S~sK~~~~~g~ri~G 220 (404)
T 1e5e_A 155 TPANPTLKIID---MERVCKDAHSQEGVLVIADNTFCSPMITN------PV-----DFGVDVVVHSATKYINGHTDVVAG 220 (404)
T ss_dssp SSCTTTCCCCC---HHHHHHHHHTSTTCEEEEECTTTCTTTCC------GG-----GGTCSEEEEETTTTTTCSSCCCCE
T ss_pred CCCCCCCcccC---HHHHHHHHHhhcCCEEEEECCCchhhhCC------cc-----ccCCEEEEEcCccccCCCCCCeEE
Confidence 99999999996 7888999999 999999999999987642 11 1367899999999999999998 9
Q ss_pred EEEEEcCCchhHHHHHH-HHHHHHhcc-ccCCChHHHHHHHHHhCC
Q psy14428 396 TFSVLTPTSDETERIMS-QLKILIRGF-YSNPPIHGARIVTEILSD 439 (583)
Q Consensus 396 ~lv~~~p~~~~~~~li~-~l~~~~~~~-~~~~s~~~q~~~~~~l~~ 439 (583)
|+++ + +++++ ++....... ..+.+.+.|.++...+++
T Consensus 221 ~~~~--~-----~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~l~~ 259 (404)
T 1e5e_A 221 LICG--K-----ADLLQQIRMVGIKDITGSVISPHDAWLITRGLST 259 (404)
T ss_dssp EEEE--C-----HHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHTT
T ss_pred EEEE--C-----HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHhHhH
Confidence 9999 7 46777 777765554 567888999988888865
|
| >3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.6e-24 Score=225.65 Aligned_cols=280 Identities=10% Similarity=0.027 Sum_probs=189.1
Q ss_pred CCCccccCCccccCCCCCCCCChHHHHHHHHHhcc-C-----CCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEE
Q psy14428 162 HPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEK-N-----LDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIV 235 (583)
Q Consensus 162 ~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~-~-----~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~ 235 (583)
+...+||+.+.+. +. .+++.+.+++.+.+.. . ....|....+..+||++++++++. +++|++
T Consensus 42 g~~~id~~~~~~~---g~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~-------~~~i~~- 109 (399)
T 3tqx_A 42 EKEVLNFCANNYL---GL-ADHPALIKTAQTVVEQYGFGMASVRFICGTQTIHKELEKDISEFLGT-------DDTILY- 109 (399)
T ss_dssp TEEEEECSSCCTT---SC-TTCHHHHHHHHHHHHHHCSCCCSCCCCCCCBHHHHHHHHHHHHHHTC-------SEEEEE-
T ss_pred CeeEEEeeccCcc---cc-cCCHHHHHHHHHHHHHhCCCCCCcCccccCchHHHHHHHHHHHHHCC-------CcEEEE-
Confidence 3467899888542 21 2457777777766644 1 111233455579999999999852 246666
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCC---CcE
Q psy14428 236 QGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPE---RSI 312 (583)
Q Consensus 236 ~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~---~~~ 312 (583)
++| ++++.++ +..+..+||.|++++|+|+.+...++..|++++.+|.. |++.+++.++.... +++
T Consensus 110 -~sG-t~a~~~~---l~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~~~~~~ 177 (399)
T 3tqx_A 110 -SSC-FDANGGL---FETLLGPEDAIISDELNHASIIDGIRLCKAQRYRYKNN-------AMGDLEAKLKEADEKGARFK 177 (399)
T ss_dssp -SCH-HHHHHTT---HHHHCCTTCEEEEETTCCHHHHHHHHSCCSEEEEECTT-------CTTHHHHHHHHHHTTTCSSE
T ss_pred -Cch-HHHHHHH---HHHhcCCCCEEEECCcccHHHHHHHHHcCCceeEeCCC-------CHHHHHHHHHhhhccCCCce
Confidence 766 6688764 45567789999999999999999999999999988862 56677777754322 789
Q ss_pred EEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHH-hcCcEEEEecCcccccccC
Q psy14428 313 LFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAK-EVGQLCLAQSFSKNMGLYG 391 (583)
Q Consensus 313 ~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~-~~~~vi~i~S~SK~~~l~G 391 (583)
++++++||||||.+++ +++|+++|+++|++||+||+|....++. ...++....+ ..+..++++||||.++ |
T Consensus 178 ~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~---~~~~~~~~~~~~~~~di~~~s~sK~~~--g 249 (399)
T 3tqx_A 178 LIATDGVFSMDGIIAD---LKSICDLADKYNALVMVDDSHAVGFIGE---NGRGTPEYCGVADRVDILTGTLGKALG--G 249 (399)
T ss_dssp EEEEESEETTTTEECC---HHHHHHHHHHTTCEEEEECTTTTTTSST---TSCCHHHHHTCTTCCSEEEEESSSSSC--S
T ss_pred EEEEeCCCCCCCCcCC---HHHHHHHHHHcCCEEEEECCccccccCC---CCCchHHhhCCCCCCcEEEecchHhcc--c
Confidence 9999999999999999 7788999999999999999996433332 1112222222 2356799999999998 4
Q ss_pred ccceEEEEEcCCchhHHHHHHHHHHHHhcc--ccCCChHHHHHHHHHhCCh--hhhhhhhhHHHHHHHHHHHHhh-ccCC
Q psy14428 392 ERVGTFSVLTPTSDETERIMSQLKILIRGF--YSNPPIHGARIVTEILSDP--KLKAQCDETERIMSQLKILIRG-FYSN 466 (583)
Q Consensus 392 lRiG~lv~~~p~~~~~~~li~~l~~~~~~~--~~~~s~~~q~~~~~~l~~~--~~~~~~~~~~~~~~~l~~~~r~-~~~~ 466 (583)
++.||+++ + +++++.+....... ..+.+.+.+.++...++.. ..++..++.++..+.+.+.++. .+..
T Consensus 250 ~~gG~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~ 322 (399)
T 3tqx_A 250 ASGGYTSG--H-----KEIIEWLRNRSRPYLFSNTVAPVIVATSLKVLELLKTEGPQLRKQLQENSRYFRAGMEKLGFQL 322 (399)
T ss_dssp SCCEEEEE--C-----HHHHHHHHHHCHHHHSSCCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTCCB
T ss_pred CceEEEEc--C-----HHHHHHHHHhCcceeccCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 56699999 7 57888888753322 3356666666766666532 2233333333322222222222 4555
Q ss_pred CccchhhHHHHhcC
Q psy14428 467 PPIHGARIVTEILS 480 (583)
Q Consensus 467 ~p~~g~~i~~~~l~ 480 (583)
.+..|.++|+.+..
T Consensus 323 ~~~~~~~~~~~~~~ 336 (399)
T 3tqx_A 323 VPGNHPIIPVMLGD 336 (399)
T ss_dssp CCCSSSEEEEEEEC
T ss_pred CCCCCCEEEEEeCC
Confidence 57778887776543
|
| >1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-23 Score=219.78 Aligned_cols=277 Identities=11% Similarity=0.052 Sum_probs=191.0
Q ss_pred CCCccccCCccccCCCCCCCCChHHHHHHHHHhcc-CC-----CCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEE
Q psy14428 162 HPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEK-NL-----DHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIV 235 (583)
Q Consensus 162 ~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~-~~-----~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~ 235 (583)
+...+||+.+.+. + ..+++.+.+++.+.+.. .. ...|....+..+||++++++++ . ++.|++
T Consensus 38 g~~~id~~~~~~~---~-~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g----~---~~~i~~- 105 (384)
T 1bs0_A 38 DRQYLNFSSNDYL---G-LSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLG----Y---SRALLF- 105 (384)
T ss_dssp TEEEEECSCCCTT---S-GGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHT----C---SEEEEE-
T ss_pred CceEEEeeccCcc---C-CCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHhC----C---CcEEEe-
Confidence 3457888887641 1 12457788887776654 21 1223456788999999999994 2 256666
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEE
Q psy14428 236 QGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFL 315 (583)
Q Consensus 236 ~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~ 315 (583)
++| ++++.++ +..+.++||.|++++|+|..+...++..|++++.+|. .|++.+++.+++..+++++++
T Consensus 106 -~sG-t~a~~~~---~~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~v~ 173 (384)
T 1bs0_A 106 -ISG-FAANQAV---IAAMMAKEDRIAADRLSHASLLEAASLSPSQLRRFAH-------NDVTHLARLLASPCPGQQMVV 173 (384)
T ss_dssp -SCH-HHHHHHH---HHHHCCTTCEEEEETTCCHHHHHHHHTSSSEEEEECT-------TCHHHHHHHHHSCCSSCEEEE
T ss_pred -CCc-HHHHHHH---HHHhCCCCcEEEEcccccHHHHHHHHHcCCCEEEeCC-------CCHHHHHHHHHhcCCCCeEEE
Confidence 776 7888875 4456777999999999999999999999999988875 278889888875444578999
Q ss_pred eCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccce
Q psy14428 316 QTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVG 395 (583)
Q Consensus 316 i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG 395 (583)
+++||||||.+++ +++|+++|++++++||+||+|.++.++.. .. ++....+. +..++++||||.++++| |
T Consensus 174 ~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~~--~~-~~~~~~~~-~~di~~~s~sK~~~~~G---G 243 (384)
T 1bs0_A 174 TEGVFSMDGDSAP---LAEIQQVTQQHNGWLMVDDAHGTGVIGEQ--GR-GSCWLQKV-KPELLVVTFGKGFGVSG---A 243 (384)
T ss_dssp EESBCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTTTTTSSGG--GC-CHHHHTTC-CCSEEEEESSSTTSSCC---E
T ss_pred EeCCCCCCCCccC---HHHHHHHHHHcCcEEEEECCcccceecCC--CC-chHHhcCC-CCcEEEeeccchhhccC---c
Confidence 9999999999998 67789999999999999999988765410 01 11121122 23499999999999777 9
Q ss_pred EEEEEcCCchhHHHHHHHHHHHHhcc--ccCCChHHHHHHHHHhCCh---hhhhhhhhHHHHHHHHHHHHhh-ccCCCcc
Q psy14428 396 TFSVLTPTSDETERIMSQLKILIRGF--YSNPPIHGARIVTEILSDP---KLKAQCDETERIMSQLKILIRG-FYSNPPI 469 (583)
Q Consensus 396 ~lv~~~p~~~~~~~li~~l~~~~~~~--~~~~s~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~l~~~~r~-~~~~~p~ 469 (583)
|+++ + +++++++....... ..+.+.+.|.++...++.- +.++..++.++..+.+.+.++. .+...|.
T Consensus 244 ~~~~--~-----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~ 316 (384)
T 1bs0_A 244 AVLC--S-----STVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDLPFTLADS 316 (384)
T ss_dssp EEEE--C-----HHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTSSCEECSC
T ss_pred EEEe--C-----HHHHHHHHHhchhhhcCCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcCCcccCC
Confidence 9999 6 57888887653222 2357888888777666421 2233333333333333333332 2334456
Q ss_pred chhhHHHHhc
Q psy14428 470 HGARIVTEIL 479 (583)
Q Consensus 470 ~g~~i~~~~l 479 (583)
.+.++|+.+.
T Consensus 317 ~~~~~~~~~~ 326 (384)
T 1bs0_A 317 CSAIQPLIVG 326 (384)
T ss_dssp CSSBCCEEEE
T ss_pred CCCEEEEEeC
Confidence 6777776553
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1e-24 Score=232.40 Aligned_cols=291 Identities=13% Similarity=0.067 Sum_probs=197.0
Q ss_pred CCCccccCCccccCCCCCCCCChHHHHHHHHHhccCC--CCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCC
Q psy14428 162 HPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNL--DHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGIS 239 (583)
Q Consensus 162 ~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~--~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G 239 (583)
+...+|++.+.+....|. +++.+.+++.+.+.... ...|.+..+..+||++|++++. + . .+++|++ |+|
T Consensus 40 g~~~id~~~~~~~~~lg~--~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~---~-~-~~~~v~~--~~g 110 (426)
T 1sff_A 40 GREYLDFAGGIAVLNTGH--LHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVP---G-D-FAKKTLL--VTT 110 (426)
T ss_dssp CCEEEESSHHHHTCTTCB--TCHHHHHHHHHHTTTCSCCCTTTEECHHHHHHHHHHHHHSS---C-S-SCEEEEE--ESS
T ss_pred CCEEEEcccChhhcccCC--CCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCC---c-c-cccEEEE--eCc
Confidence 345678888876444443 45788888887775421 2357788899999999999984 2 2 3589999 999
Q ss_pred chhHHHHHHHHHHHhCCCCCEEEEcCCCChhhH-HHHhhcCCe-------------EEEEecccC----CCCCCChhhHH
Q psy14428 240 GSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHV-RFCTDSRLN-------------VGAYRYFDN----KTNGLDFAGMM 301 (583)
Q Consensus 240 ~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~-~~~~~~G~~-------------~~~v~~~d~----~~~g~d~~~l~ 301 (583)
+++|+.++..+.+.+.++| .|++++|+|..+. ..+...|.+ ++.+|+ +. .++.+|++.++
T Consensus 111 ~~~a~~~~~~~a~~~~~~~-~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~v~~-~~~~~~~~~~~d~~~l~ 188 (426)
T 1sff_A 111 GSEAVENAVKIARAATKRS-GTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALY-PCPLHGISEDDAIASIH 188 (426)
T ss_dssp HHHHHHHHHHHHHHHHTCC-EEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECC-CBGGGTBCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhCCC-eEEEECCCcCCCchHhhhhcCCccccccccCCCCCCcEEeCC-CccccccchHHHHHHHH
Confidence 9999998754333455555 8999999997754 455555543 666776 32 11236888998
Q ss_pred HHHHcC--CCCcEEEEe-CCCCCCCC-CCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcE
Q psy14428 302 EDIKAM--PERSILFLQ-TSSHNPTG-VDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQL 377 (583)
Q Consensus 302 ~~l~~~--~~~~~~i~i-~~p~NPTG-~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~v 377 (583)
+.+++. .++++++++ |+||| || .+++++++++|+++|+++|++||+||+|.+|.+.+. ..++ +..+.+
T Consensus 189 ~~l~~~~~~~~~~~v~~~p~~~n-tG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~---~~~~----~~~~~~ 260 (426)
T 1sff_A 189 RIFKNDAAPEDIAAIVIEPVQGE-GGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGT---LFAM----EQMGVA 260 (426)
T ss_dssp HHHHHTCCGGGEEEEEECSBCTT-TTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSGG----GGTTSC
T ss_pred HHHHhccCCCceEEEEEecccCC-CCcccCCHHHHHHHHHHHHHcCCEEEEechhhccCcccc---hhhh----hhcCCC
Confidence 888531 134555555 78889 99 899999999999999999999999999999876541 1111 122333
Q ss_pred EEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhC---ChhhhhhhhhHHHHHH
Q psy14428 378 CLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILS---DPKLKAQCDETERIMS 454 (583)
Q Consensus 378 i~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~~ 454 (583)
+.+.||||.++. |+|+||+++ + +++++.+.........+.+.++|.++...++ ++.+.++..+.+..+.
T Consensus 261 ~di~s~sK~~~~-GlriG~~~~--~-----~~~~~~l~~~~~~~~~~~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~l~ 332 (426)
T 1sff_A 261 PDLTTFAKSIAG-GFPLAGVTG--R-----AEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLK 332 (426)
T ss_dssp CSEEEECGGGGT-SSCCEEEEE--E-----HHHHTTSCTTSBCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred CCEEEEcccccC-CCceEEEEE--c-----HHHHhhhccCCcCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 445699999995 999999999 6 5777777643344556789999998885554 3344444444443332
Q ss_pred -HHHHHHhhc--cCCCccchhhHHHHhc
Q psy14428 455 -QLKILIRGF--YSNPPIHGARIVTEIL 479 (583)
Q Consensus 455 -~l~~~~r~~--~~~~p~~g~~i~~~~l 479 (583)
.+..+.... +...+..|.++|+.+.
T Consensus 333 ~~l~~~~~~~~~~~~~~~~g~~~~~~~~ 360 (426)
T 1sff_A 333 DGLLAIAEKHPEIGDVRGLGAMIAIELF 360 (426)
T ss_dssp HHHHHHHHTCTTEEEEEEETTEEEEEEB
T ss_pred HHHHHHHHhCCCeEEEEEEEEEEEEEEe
Confidence 333321111 1122334888887763
|
| >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.92 E-value=8.7e-24 Score=224.14 Aligned_cols=211 Identities=11% Similarity=0.062 Sum_probs=166.3
Q ss_pred CccccCCccccCCCCCCCCChHHHHHHHHHhccC------CCCCCCC--CCCCHHHHHHHHHHHhCCCCCCCCCCCeEEE
Q psy14428 164 KKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKN------LDHEYAN--IGGDAKFCKLAAQLAYGEDFPAFKDNRLAIV 235 (583)
Q Consensus 164 ~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~------~~~~Y~~--~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~ 235 (583)
+.++|+.|.+. + +++.+.+++.+..... ....|++ ..+..+||++++++++.. ++++|++
T Consensus 28 ~~i~l~~~~~~-----~-~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~~-----~~~~v~~- 95 (420)
T 1t3i_A 28 PLVYLDNAATS-----Q-KPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINAR-----SPREIVY- 95 (420)
T ss_dssp ECEECBTTTCC-----C-CCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCS-----CGGGEEE-
T ss_pred ceEEecCCccC-----C-CCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcCCC-----CCCeEEE-
Confidence 47889888874 1 4577888877766541 1234554 578899999999998642 5689999
Q ss_pred ecCCchhHHHHHHHHHHHh----CCCCCEEEEcCCCChh----hHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcC
Q psy14428 236 QGISGSGSLRVGTAFLERF----YPGVKTVYFPTPTWNG----HVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAM 307 (583)
Q Consensus 236 ~t~G~~~al~l~~~~l~~~----~~~gd~Vlv~~P~y~~----~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~ 307 (583)
|+|+++|+.++ +..+ ..+||+|++++|+|.. +...++..|++++.+|+ + +++.+|++.+++.+
T Consensus 96 -~~g~t~a~~~~---~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~-~-~~~~~d~~~l~~~l--- 166 (420)
T 1t3i_A 96 -TRNATEAINLV---AYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQL-D-EQESFDLEHFKTLL--- 166 (420)
T ss_dssp -ESSHHHHHHHH---HHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECB-C-TTSSBCHHHHHHHC---
T ss_pred -cCChHHHHHHH---HHHhhhcccCCCCEEEECcchhHHHHHHHHHHHHhcCcEEEEecc-C-CCCCcCHHHHHHhh---
Confidence 99999999986 3444 6679999999999998 56677788999999998 4 34668999998887
Q ss_pred CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccc
Q psy14428 308 PERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNM 387 (583)
Q Consensus 308 ~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~ 387 (583)
.++++++++++|+||||.+++ +++|.++|+++|++||+||+|......- .+.. .+..+++.|+||.+
T Consensus 167 ~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~~~~~~------~~~~----~~~di~~~s~sK~~ 233 (420)
T 1t3i_A 167 SEKTKLVTVVHISNTLGCVNP---AEEIAQLAHQAGAKVLVDACQSAPHYPL------DVQL----IDCDWLVASGHKMC 233 (420)
T ss_dssp CTTEEEEEEESBCTTTCBBCC---HHHHHHHHHHTTCEEEEECTTTTTTSCC------CHHH----HTCSEEEEEGGGTT
T ss_pred CCCceEEEEeCCcccccCcCC---HHHHHHHHHHcCCEEEEEhhhccCCccC------chhh----cCCCEEEEehhhhc
Confidence 567899999999999999999 6788999999999999999998654321 1222 24678999999999
Q ss_pred cccCccceEEEEEcCCchhHHHHHHHHHHH
Q psy14428 388 GLYGERVGTFSVLTPTSDETERIMSQLKIL 417 (583)
Q Consensus 388 ~l~GlRiG~lv~~~p~~~~~~~li~~l~~~ 417 (583)
|.+| +||+++ + +++++++...
T Consensus 234 ~~~g--~G~~~~--~-----~~~~~~~~~~ 254 (420)
T 1t3i_A 234 APTG--IGFLYG--K-----EEILEAMPPF 254 (420)
T ss_dssp SCTT--CEEEEE--C-----HHHHHHSCCC
T ss_pred CCCc--eEEEEE--c-----hHHHhhcCce
Confidence 9778 999999 6 5777776543
|
| >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.5e-23 Score=218.11 Aligned_cols=198 Identities=14% Similarity=0.046 Sum_probs=153.9
Q ss_pred CChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEE
Q psy14428 182 VLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTV 261 (583)
Q Consensus 182 ~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~V 261 (583)
+++.+.+++.+.. ..+|++. ..++++++++++.+..|.+ ++++|++ |+|+++|+.++ +..+..+||+|
T Consensus 31 ~~~~v~~a~~~~~----~~~~~~~--~~~~~~~~~~~la~~~g~~-~~~~v~~--~~g~t~a~~~~---~~~l~~~gd~v 98 (386)
T 2dr1_A 31 CFPEVLEIMKVQM----FSHRSKE--YRKVHMDTVERLREFLEVE-KGEVLLV--PSSGTGIMEAS---IRNGVSKGGKV 98 (386)
T ss_dssp CCHHHHHHTTSCC----CCTTSHH--HHHHHHHHHHHHHHHHTCS-SSEEEEE--SSCHHHHHHHH---HHHHSCTTCEE
T ss_pred CcHHHHHHHhccc----ccccCHH--HHHHHHHHHHHHHHHhCCC-CCcEEEE--eCChHHHHHHH---HHHhhcCCCeE
Confidence 4567776654433 2246432 3678888888887766665 5778999 99999999985 44456679999
Q ss_pred EEcCCCChh--hHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHH
Q psy14428 262 YFPTPTWNG--HVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVV 339 (583)
Q Consensus 262 lv~~P~y~~--~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a 339 (583)
++++|+|.. +...++..|++++.++. +. ++.+|++.+++.+++ .++++++++++|+||||.+.+ +++|+++|
T Consensus 99 l~~~~~~~~~~~~~~~~~~g~~~~~v~~-~~-~~~~d~~~l~~~l~~-~~~~~~v~~~~~~nptG~~~~---l~~i~~l~ 172 (386)
T 2dr1_A 99 LVTIIGAFGKRYKEVVESNGRKAVVLEY-EP-GKAVKPEDLDDALRK-NPDVEAVTITYNETSTGVLNP---LPELAKVA 172 (386)
T ss_dssp EEEESSHHHHHHHHHHHHTTCEEEEEEC-CT-TCCCCHHHHHHHHHH-CTTCCEEEEESEETTTTEECC---HHHHHHHH
T ss_pred EEEcCCchhHHHHHHHHHhCCceEEEec-CC-CCCCCHHHHHHHHhc-CCCCcEEEEEeecCCcchhCC---HHHHHHHH
Confidence 999999998 88889999999999998 54 466899999998864 246788888999999999987 67889999
Q ss_pred HhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHH
Q psy14428 340 KQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLK 415 (583)
Q Consensus 340 ~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~ 415 (583)
+++|++||+||+|..+.+.- ++ +..+.++++.|+||.++.++ ++||+++ + +++++++.
T Consensus 173 ~~~~~~li~D~a~~~~~~~~------~~----~~~~~di~~~s~sK~~~~~~-g~G~~~~--~-----~~~~~~~~ 230 (386)
T 2dr1_A 173 KEHDKLVFVDAVSAMGGADI------KF----DKWGLDVVFSSSQKAFGVPP-GLAIGAF--S-----ERFLEIAE 230 (386)
T ss_dssp HHTTCEEEEECTTTBTTBCC------CT----TTTTCSEEEEETTSTTCCCS-SCEEEEE--C-----HHHHHHHT
T ss_pred HHcCCeEEEEccccccCccc------cc----cccCCcEEEEeccccccCCC-ceEEEEE--C-----HHHHHHHh
Confidence 99999999999998776431 11 22356899999999998663 4999999 6 46777663
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.6e-24 Score=225.13 Aligned_cols=281 Identities=12% Similarity=0.139 Sum_probs=189.8
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccC--CCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecC
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKN--LDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGI 238 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~--~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~ 238 (583)
.+...+|++.+.+....+. +++.+.+++.+.+... ....| +..+..+|++++++++ |. +++|++ |+
T Consensus 26 ~g~~~ld~~~~~~~~~~g~--~~~~v~~a~~~~~~~~~~~~~~y-~~~~~~~l~~~la~~~----g~---~~~v~~--~~ 93 (375)
T 2eh6_A 26 EGKEYLDFVSGIGVNSLGH--AYPKLTEALKEQVEKLLHVSNLY-ENPWQEELAHKLVKHF----WT---EGKVFF--AN 93 (375)
T ss_dssp TCCEEEESSHHHHTCTTCB--SCHHHHHHHHHHHHHCSCCCTTB-CCHHHHHHHHHHHHTS----SS---CEEEEE--ES
T ss_pred CCCEEEEcCCcccccccCC--CCHHHHHHHHHHHHhccccCccc-CCHHHHHHHHHHHhhc----CC---CCeEEE--eC
Confidence 3456789999887544442 4578888887776531 12357 4567899999999986 33 489999 99
Q ss_pred CchhHHHHHHHHHHHhC---CCC-CEEEEcCCCChhhHHHHhhcCCe-------------EEEEecccCCCCCCChhhHH
Q psy14428 239 SGSGSLRVGTAFLERFY---PGV-KTVYFPTPTWNGHVRFCTDSRLN-------------VGAYRYFDNKTNGLDFAGMM 301 (583)
Q Consensus 239 G~~~al~l~~~~l~~~~---~~g-d~Vlv~~P~y~~~~~~~~~~G~~-------------~~~v~~~d~~~~g~d~~~l~ 301 (583)
|+++|+.++...+..+. ++| |+|++++|+|..+...+...+.. +..++. .|++.++
T Consensus 94 g~t~a~~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~ 166 (375)
T 2eh6_A 94 SGTESVEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKL-------NDIDSVY 166 (375)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSSEEEECT-------TCHHHHH
T ss_pred chHHHHHHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCCCCceeCCC-------chHHHHH
Confidence 99999998754333344 557 99999999999887655544322 222222 3777777
Q ss_pred HHHHcCCCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEE
Q psy14428 302 EDIKAMPERSILFLQTSSHNPTGVD-LSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLA 380 (583)
Q Consensus 302 ~~l~~~~~~~~~i~i~~p~NPTG~~-~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i 380 (583)
+.+ .++++++++++||||||.+ .+.+++++|+++|+++|++||+||+|.+|...+. ..++..+ +...+++
T Consensus 167 ~~l---~~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~---~~~~~~~-~~~~d~~-- 237 (375)
T 2eh6_A 167 KLL---DEETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGE---FYAYQHF-NLKPDVI-- 237 (375)
T ss_dssp TTC---CTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSGGGGG-TCCCSEE--
T ss_pred HHh---cCCeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCc---chhhhhc-CCCCCEE--
Confidence 665 4578899999999999999 5799999999999999999999999998765431 1122221 1123444
Q ss_pred ecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHH
Q psy14428 381 QSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILI 460 (583)
Q Consensus 381 ~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 460 (583)
||||.++ +|+|+||+++ + +++++++.........+.+.+.|.++...++... +..++.++..+.+.+.+
T Consensus 238 -s~SK~~~-~g~~~G~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~L 306 (375)
T 2eh6_A 238 -ALAKGLG-GGVPIGAILA--R-----EEVAQSFTPGSHGSTFGGNPLACRAGTVVVDEVE--KLLPHVREVGNYFKEKL 306 (375)
T ss_dssp -EECGGGG-TTSCCEEEEE--E-----HHHHTTCCTTSCCCSSTTCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
T ss_pred -EEccccc-CCCCeEEEEE--c-----HHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 8999999 7999999999 6 4677776653333455678899988887776432 22222222222232223
Q ss_pred hhc-cCCCccchhhHHHHhcC
Q psy14428 461 RGF-YSNPPIHGARIVTEILS 480 (583)
Q Consensus 461 r~~-~~~~p~~g~~i~~~~l~ 480 (583)
+.. ....+..|.++|+.+..
T Consensus 307 ~~~~~~~~~~~g~~~~~~~~~ 327 (375)
T 2eh6_A 307 KELGKGKVKGRGLMLGLELER 327 (375)
T ss_dssp HHTTSSEEEEETTEEEEECSS
T ss_pred HHHhcCCceEEEEEEEEEEcC
Confidence 221 23345667777776543
|
| >1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.9e-23 Score=220.00 Aligned_cols=197 Identities=12% Similarity=0.078 Sum_probs=153.5
Q ss_pred CChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCC-CeEEEecCCchhHHHHHHHHHHHhCCCCCE
Q psy14428 182 VLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDN-RLAIVQGISGSGSLRVGTAFLERFYPGVKT 260 (583)
Q Consensus 182 ~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~-~I~i~~t~G~~~al~l~~~~l~~~~~~gd~ 260 (583)
+++.+.+++.+... ..|++. ..++++++++++.+..|. +++ +|++ |+|+++|+.++ +..+..+||+
T Consensus 45 ~~~~v~~a~~~~~~----~~~~~~--~~~~~~~~~~~la~~~g~--~~~~~v~~--t~g~t~al~~~---~~~~~~~gd~ 111 (393)
T 1vjo_A 45 AHPSVLQAMNVSPV----GHLDPA--FLALMDEIQSLLRYVWQT--ENPLTIAV--SGTGTAAMEAT---IANAVEPGDV 111 (393)
T ss_dssp CCHHHHHHHSSCCC----CTTSHH--HHHHHHHHHHHHHHHHTC--CCSCEEEE--SSCHHHHHHHH---HHHHCCTTCE
T ss_pred CCHHHHHHHhcccc----cccCHH--HHHHHHHHHHHHHHHhCC--CCCcEEEE--eCchHHHHHHH---HHhccCCCCE
Confidence 45777777655432 246442 567788888877766554 567 8999 99999999985 4445677999
Q ss_pred EEEcCCCChh--hHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHH
Q psy14428 261 VYFPTPTWNG--HVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVV 338 (583)
Q Consensus 261 Vlv~~P~y~~--~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~ 338 (583)
|++++|+|.. +...++..|++++.+|+ ++ ++.+|++.+++.+... +++++++++||||||.+++ +++|+++
T Consensus 112 Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~-~~-~~~~d~~~l~~~l~~~--~~~~v~~~~~~nptG~~~~---l~~i~~l 184 (393)
T 1vjo_A 112 VLIGVAGYFGNRLVDMAGRYGADVRTISK-PW-GEVFSLEELRTALETH--RPAILALVHAETSTGARQP---LEGVGEL 184 (393)
T ss_dssp EEEEESSHHHHHHHHHHHHTTCEEEEEEC-CT-TCCCCHHHHHHHHHHH--CCSEEEEESEETTTTEECC---CTTHHHH
T ss_pred EEEEcCChhHHHHHHHHHHcCCceEEEec-CC-CCCCCHHHHHHHHhhC--CceEEEEeccCCCcceecc---HHHHHHH
Confidence 9999999999 99999999999999998 54 3568999999988531 5678899999999999987 6788999
Q ss_pred HHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHH
Q psy14428 339 VKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKI 416 (583)
Q Consensus 339 a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~ 416 (583)
|+++|++||+||+|. +. .. + ..+ +..+..+++.|+||.++.+| |+||+++ + +++++++..
T Consensus 185 ~~~~~~~li~Dea~~-~g--~~--~-~~~----~~~~~di~~~s~sK~l~~~~-~~G~l~~--~-----~~~~~~~~~ 244 (393)
T 1vjo_A 185 CREFGTLLLVDTVTS-LG--GV--P-IFL----DAWGVDLAYSCSQKGLGCSP-GASPFTM--S-----SRAIEKLQR 244 (393)
T ss_dssp HHHHTCEEEEECTTT-TT--TS--C-CCT----TTTTCSEEECCSSSTTCSCS-SCEEEEE--C-----HHHHHHHHT
T ss_pred HHHcCCEEEEECCcc-cc--Cc--C-Ccc----cccCccEEEEcCcccccCCC-ceEEEEE--C-----HHHHHHHhc
Confidence 999999999999998 32 11 1 111 22356789999999998788 9999999 7 577777754
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=7.1e-24 Score=223.84 Aligned_cols=238 Identities=12% Similarity=0.163 Sum_probs=166.5
Q ss_pred CCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCC--CCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCC
Q psy14428 162 HPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLD--HEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGIS 239 (583)
Q Consensus 162 ~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~--~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G 239 (583)
+...+|++.+.+....|. +++.+.+++.+..+.... ..| +.....+|++.+++++ | +++|++ |+|
T Consensus 39 g~~~ld~~~~~~~~~lg~--~~~~v~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~----g----~~~v~~--~~g 105 (397)
T 2ord_A 39 GNAYLDFTSGIAVNVLGH--SHPRLVEAIKDQAEKLIHCSNLF-WNRPQMELAELLSKNT----F----GGKVFF--ANT 105 (397)
T ss_dssp CCEEEESSHHHHTCTTCB--TCHHHHHHHHHHHHHCSCCCTTS-EEHHHHHHHHHHHHTT----T----SCEEEE--ESS
T ss_pred CCEEEECCccccccccCC--CCHHHHHHHHHHHHhcccCcccc-CCHHHHHHHHHHHHhc----C----CCeEEE--eCC
Confidence 445689988866544443 457888888777654211 112 2223345555555543 3 479999 999
Q ss_pred chhHHHHHHHHHHHhC----CCCCEEEEcCCCChhh-HHHHhhcCCe------------EEEEecccCCCCCCChhhHHH
Q psy14428 240 GSGSLRVGTAFLERFY----PGVKTVYFPTPTWNGH-VRFCTDSRLN------------VGAYRYFDNKTNGLDFAGMME 302 (583)
Q Consensus 240 ~~~al~l~~~~l~~~~----~~gd~Vlv~~P~y~~~-~~~~~~~G~~------------~~~v~~~d~~~~g~d~~~l~~ 302 (583)
+++|+.++...+.... +.++.|++++|+|... ...++..|.+ ++.+|. + |++.+++
T Consensus 106 g~~a~~~al~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~-~------d~~~l~~ 178 (397)
T 2ord_A 106 GTEANEAAIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEF-N------NVEDLRR 178 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCCEEEEEBTCCCCSSHHHHHHSBCHHHHGGGCSCCTTEEEECT-T------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCceEEEEcCCcCCCchhhhhccCChhhccccCCCCCCeeEecC-C------CHHHHHH
Confidence 9999998644332211 3257899999999654 4467777776 666655 1 7888888
Q ss_pred HHHcCCCCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEe
Q psy14428 303 DIKAMPERSILFLQTSSHNPTGV-DLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQ 381 (583)
Q Consensus 303 ~l~~~~~~~~~i~i~~p~NPTG~-~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~ 381 (583)
.+ .++++++++++||||||. +++.+++++|+++|+++|++||+||+|.++.+.+ ...++..+ +...+++
T Consensus 179 ~l---~~~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g---~~~~~~~~-~~~~d~~--- 248 (397)
T 2ord_A 179 KM---SEDVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTG---KLFAYQKY-GVVPDVL--- 248 (397)
T ss_dssp HC---CTTEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTS---SSSHHHHH-TCCCSEE---
T ss_pred Hh---hcCeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCc---cchhhhhh-CCCCCee---
Confidence 77 467899999999999999 9999999999999999999999999999887654 12233333 2223333
Q ss_pred cCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhC
Q psy14428 382 SFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILS 438 (583)
Q Consensus 382 S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~ 438 (583)
||||.++ +|+|+||+++ ++ +++ .+........++.+.+.|.++...++
T Consensus 249 s~sK~~~-~G~r~G~~~~--~~-----~~~-~l~~~~~~~~~~~~~~~~~a~~~~l~ 296 (397)
T 2ord_A 249 TTAKGLG-GGVPIGAVIV--NE-----RAN-VLEPGDHGTTFGGNPLACRAGVTVIK 296 (397)
T ss_dssp EECGGGG-TTSCCEEEEE--CS-----TTC-CCCTTSSCCSSTTCHHHHHHHHHHHH
T ss_pred eeccccC-CCcCeEEEEE--ch-----Hhc-ccCCCCcCCCCCCCHHHHHHHHHHHH
Confidence 8899999 9999999999 64 454 44432333456778999988887764
|
| >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.9e-23 Score=218.96 Aligned_cols=211 Identities=13% Similarity=0.107 Sum_probs=163.0
Q ss_pred CccccCCccccCCCCCCCCChHHHHHHHHHhccCC--CC------CCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEE
Q psy14428 164 KKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNL--DH------EYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIV 235 (583)
Q Consensus 164 ~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~--~~------~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~ 235 (583)
+.+.|+.+.+. + +++.+.+++.+.+.... .. .|.+..+..+||++++++++.. ++++|++
T Consensus 23 ~~i~l~~~~~~-----~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~-----~~~~v~~- 90 (406)
T 1kmj_A 23 PLAYLDSAASA-----Q-KPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINAR-----SAEELVF- 90 (406)
T ss_dssp ECEECCTTTCC-----C-CCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCS-----CGGGEEE-
T ss_pred ceEEecCCccC-----C-CCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcCCC-----CCCeEEE-
Confidence 46778877763 1 45678888777665421 11 1335678899999999998632 5689999
Q ss_pred ecCCchhHHHHHHHHHHHh----CCCCCEEEEcCCCChh----hHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcC
Q psy14428 236 QGISGSGSLRVGTAFLERF----YPGVKTVYFPTPTWNG----HVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAM 307 (583)
Q Consensus 236 ~t~G~~~al~l~~~~l~~~----~~~gd~Vlv~~P~y~~----~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~ 307 (583)
|+|+++|+.++ +..+ ..+||+|++++|+|.. +...++..|++++.+|+ ++ ++.+|++.+++.+
T Consensus 91 -~~g~t~a~~~~---~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~-~~~~d~~~l~~~l--- 161 (406)
T 1kmj_A 91 -VRGTTEGINLV---ANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPL-NP-DGTLQLETLPTLF--- 161 (406)
T ss_dssp -ESSHHHHHHHH---HHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECB-CT-TSCBCGGGHHHHC---
T ss_pred -eCChhHHHHHH---HHHhhhhcCCCCCEEEEecccchHHHHHHHHHHHhCCCEEEEEec-CC-CCCcCHHHHHHHh---
Confidence 99999999986 3445 6679999999999764 44557778999999998 43 4678999999887
Q ss_pred CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccc
Q psy14428 308 PERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNM 387 (583)
Q Consensus 308 ~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~ 387 (583)
.++++++++++|+||||.+++ +++|+++|+++|++||+||+|...... . .+.. .+..+++.|+||.+
T Consensus 162 ~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~~~~~g~~~-----~-~~~~----~~~d~~~~s~~K~~ 228 (406)
T 1kmj_A 162 DEKTRLLAITHVSNVLGTENP---LAEMITLAHQHGAKVLVDGAQAVMHHP-----V-DVQA----LDCDFYVFSGHKLY 228 (406)
T ss_dssp CTTEEEEEEESBCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTTTTTSC-----C-CHHH----HTCSEEEEEGGGTT
T ss_pred ccCCeEEEEeCCCccccCcCC---HHHHHHHHHHcCCEEEEEchhhcCCCC-----C-cccc----cCCCEEEEEchhcc
Confidence 567899999999999999999 778899999999999999999865421 1 1222 25678999999999
Q ss_pred cccCccceEEEEEcCCchhHHHHHHHHHHH
Q psy14428 388 GLYGERVGTFSVLTPTSDETERIMSQLKIL 417 (583)
Q Consensus 388 ~l~GlRiG~lv~~~p~~~~~~~li~~l~~~ 417 (583)
|.+| +||+++ + +++++++...
T Consensus 229 g~~G--~G~~~~--~-----~~~~~~~~~~ 249 (406)
T 1kmj_A 229 GPTG--IGILYV--K-----EALLQEMPPW 249 (406)
T ss_dssp SCTT--CEEEEE--C-----HHHHHHCCCS
T ss_pred CCCC--cEEEEE--e-----HHHHhhcCCc
Confidence 9888 899999 6 5777776543
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-23 Score=218.50 Aligned_cols=206 Identities=11% Similarity=-0.003 Sum_probs=155.2
Q ss_pred CCCccccCCccccCCCCCCCCChHHHHHHHHHhccC--------CCCCCCCCCCCHHHHHH-HHHHHhCCCCCCCCCCCe
Q psy14428 162 HPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKN--------LDHEYANIGGDAKFCKL-AAQLAYGEDFPAFKDNRL 232 (583)
Q Consensus 162 ~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~--------~~~~Y~~~~G~~~Lr~a-ia~~~~~~~g~~~~~~~I 232 (583)
.++.+.|..|.... .+++.+.+++.+..... ....|.+..+..+||++ ++++++. + +|
T Consensus 6 ~~~~i~ld~~~~~~-----~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~~~------~--~v 72 (371)
T 2e7j_A 6 TKDFINIDPLQTGG-----KLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGC------D--VA 72 (371)
T ss_dssp --CCEECCHHHHTC-----CCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTS------S--EE
T ss_pred CCCcEEecccccCC-----CCCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHcCC------C--EE
Confidence 45567777765431 15678888887766432 12346678899999999 9999853 2 89
Q ss_pred EEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEe--cccCCCCCCChhhHHHHHHcCC--
Q psy14428 233 AIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYR--YFDNKTNGLDFAGMMEDIKAMP-- 308 (583)
Q Consensus 233 ~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~--~~d~~~~g~d~~~l~~~l~~~~-- 308 (583)
++ |+|+++|+.++ +..+..+||+|++++|+|..+...++..|++++.+| . ++ ++++|++.+++.+.+..
T Consensus 73 ~~--~~g~t~a~~~~---~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~-~~~~d~~~l~~~l~~~~~~ 145 (371)
T 2e7j_A 73 RV--TNGAREAKFAV---MHSLAKKDAWVVMDENCHYSSYVAAERAGLNIALVPKTD-YP-DYAITPENFAQTIEETKKR 145 (371)
T ss_dssp EE--ESSHHHHHHHH---HHHHCCTTCEEEEETTCCHHHHHHHHHTTCEEEEECCCC-TT-TCCCCHHHHHHHHHHHTTT
T ss_pred EE--eCChHHHHHHH---HHHHhCCCCEEEEccCcchHHHHHHHHcCCeEEEeeccc-CC-CCCcCHHHHHHHHHhhccc
Confidence 99 99999999986 444566799999999999999999999999999999 6 43 47899999999885321
Q ss_pred CCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCccccc
Q psy14428 309 ERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMG 388 (583)
Q Consensus 309 ~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~ 388 (583)
++++++++++||||||.+++. ++|+++|+++|++||+||+|..+...- ++..+ +..+++.||||.++
T Consensus 146 ~~~~~v~~~~~~nptG~~~~~---~~i~~~~~~~~~~li~D~a~~~~~~~~------~~~~~----~~di~~~s~sK~~~ 212 (371)
T 2e7j_A 146 GEVVLALITYPDGNYGNLPDV---KKIAKVCSEYDVPLLVNGAYAIGRMPV------SLKEI----GADFIVGSGHKSMA 212 (371)
T ss_dssp SCEEEEEEESSCTTTCCCCCH---HHHHHHHHTTTCCEEEECTTTBTTBCC------CHHHH----TCSEEEEEHHHHSS
T ss_pred CCeEEEEEECCCCCCcccCCH---HHHHHHHHHcCCeEEEECccccCCCCC------Chhhc----CCCEEEecCCcCCC
Confidence 578899999999999999985 777889999999999999999876431 22222 34589999999998
Q ss_pred ccCccceEEEEEcCC
Q psy14428 389 LYGERVGTFSVLTPT 403 (583)
Q Consensus 389 l~GlRiG~lv~~~p~ 403 (583)
. +.|+||+++ ++
T Consensus 213 ~-~~~~G~~~~--~~ 224 (371)
T 2e7j_A 213 A-SGPIGVMGM--KE 224 (371)
T ss_dssp C-CSSCEEEEE--CT
T ss_pred C-CCCcEEEEE--ec
Confidence 4 459999999 63
|
| >1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 | Back alignment and structure |
|---|
Probab=99.91 E-value=6.7e-23 Score=216.45 Aligned_cols=278 Identities=10% Similarity=0.051 Sum_probs=189.9
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhcc-CCC---CCCC--CCCCCHHHHHHHHHHHhCCCCCCCCCCCeEE
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEK-NLD---HEYA--NIGGDAKFCKLAAQLAYGEDFPAFKDNRLAI 234 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~-~~~---~~Y~--~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i 234 (583)
.+...+||+.+.+ .+. .+++.+.+++.+.+.. ... ..|. ...+..+||++++++++ . + ++|++
T Consensus 43 ~g~~~id~~~~~~---~g~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g----~--~-~~i~~ 111 (401)
T 1fc4_A 43 DGSHVINFCANNY---LGL-ANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFLG----M--E-DAILY 111 (401)
T ss_dssp TSCEEEECCCSCT---TSC-TTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHHT----C--S-EEEEE
T ss_pred CCccEEEeeccCc---ccc-cCCHHHHHHHHHHHHHhCCCCCCCCcccCCcHHHHHHHHHHHHHhC----C--C-cEEEe
Confidence 3456789988854 231 1357788887776643 211 1232 25678999999999994 2 2 56766
Q ss_pred EecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCC---Cc
Q psy14428 235 VQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPE---RS 311 (583)
Q Consensus 235 ~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~---~~ 311 (583)
++| ++++..+ +..+..+||.|++++|+|..+...++..|++++.++. .|++.+++.+.+..+ ++
T Consensus 112 --~sG-s~a~~~~---~~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~~ 178 (401)
T 1fc4_A 112 --SSC-FDANGGL---FETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYAN-------NDMQELEARLKEAREAGARH 178 (401)
T ss_dssp --SCH-HHHHHTT---HHHHCCTTCEEEEETTCCHHHHHHHHTSCSEEEEECT-------TCHHHHHHHHHHHHHTTCSS
T ss_pred --CCh-HHHHHHH---HHHHcCCCCEEEEcchhHHHHHHHHHHcCCceEEECC-------CCHHHHHHHHHHhhccCCCc
Confidence 776 5587764 4456777999999999999888889999999988864 277888887754211 67
Q ss_pred EEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCC-CCCC-CCCCCchHHHHHHHHhcCcEEEEecCcccc-c
Q psy14428 312 ILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYL-GLTS-GDFDKDAFSLRYFAKEVGQLCLAQSFSKNM-G 388 (583)
Q Consensus 312 ~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~-~l~~-~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~-~ 388 (583)
+++++++||||||.+++ +++|+++|++++++||+||+|. ++.+ .+ ....+...+ ..+.+++++||||.+ +
T Consensus 179 ~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~li~De~~~~g~~~~~g--~~~~~~~~~--~~~~di~~~s~sK~~~~ 251 (401)
T 1fc4_A 179 VLIATDGVFSMDGVIAN---LKGVCDLADKYDALVMVDDSHAVGFVGENG--RGSHEYCDV--MGRVDIITGTLGKALGG 251 (401)
T ss_dssp EEEEEESEETTTTEECC---HHHHHHHHHHTTEEEEEECTTTTTTSSTTS--CCHHHHTTC--TTCCSEEEEESSSTTCS
T ss_pred eEEEEeCCcCCCCCCCC---HHHHHHHHHHcCCEEEEECcccccccCCCC--CccHHHcCC--CcCCcEEEecchhhccC
Confidence 89999999999999999 7788999999999999999995 8864 33 122221111 124579999999999 6
Q ss_pred ccCccceEEEEEcCCchhHHHHHHHHHHHHhc--cccCCChHHHHHHHHHhCChh-hhhhhhhHHHHHHHHHHHHhh-cc
Q psy14428 389 LYGERVGTFSVLTPTSDETERIMSQLKILIRG--FYSNPPIHGARIVTEILSDPK-LKAQCDETERIMSQLKILIRG-FY 464 (583)
Q Consensus 389 l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~--~~~~~s~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~l~~~~r~-~~ 464 (583)
.+| ||+++ + +++++.+...... ...+.+.+.|.++...++.-. .++..++.++..+.+.+.++. .+
T Consensus 252 ~~g---G~~~~--~-----~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g~ 321 (401)
T 1fc4_A 252 ASG---GYTAA--R-----KEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFREQMSAAGF 321 (401)
T ss_dssp SSC---EEEEE--C-----HHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCC---EEEEc--C-----HHHHHHHHHhCcCceeCCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 555 99999 6 5788888875422 245788899998887775321 122222222222222222222 34
Q ss_pred CCCccchhhHHHHhc
Q psy14428 465 SNPPIHGARIVTEIL 479 (583)
Q Consensus 465 ~~~p~~g~~i~~~~l 479 (583)
...|..|.++|+.+.
T Consensus 322 ~~~~~~~~~~~~~~~ 336 (401)
T 1fc4_A 322 TLAGADHAIIPVMLG 336 (401)
T ss_dssp CBCCSSSSEEEEEEE
T ss_pred cccCCCCCEEEEEcC
Confidence 444677888877664
|
| >1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-23 Score=216.85 Aligned_cols=272 Identities=13% Similarity=0.065 Sum_probs=177.9
Q ss_pred CccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhH
Q psy14428 164 KKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGS 243 (583)
Q Consensus 164 ~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~a 243 (583)
..|+|+.+... +|++.+.+++.+.... ...|.+..+..+||+++|++++. +++++ ++||+++
T Consensus 4 ~~i~~~~~~~~------~p~~~~~~a~~~~~~~--~~~y~~~~~~~~l~~~la~~~g~--------~~~~~--~~~gt~a 65 (347)
T 1jg8_A 4 MMIDLRSDTVT------KPTEEMRKAMAQAEVG--DDVYGEDPTINELERLAAETFGK--------EAALF--VPSGTMG 65 (347)
T ss_dssp -CEECSCGGGC------CCCHHHHHHHHTCCCC--CGGGTCCHHHHHHHHHHHHHHTC--------SEEEE--ESCHHHH
T ss_pred eEEEeccccCC------CCCHHHHHHHhcCCCC--CcccCCChHHHHHHHHHHHHhCC--------ceEEE--ecCcHHH
Confidence 45778777763 2557788877654321 24688888999999999999863 35666 7777888
Q ss_pred HHHHHHHHHHhCCCCCEEEEcCCCChhhH---HHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcC---CCCcEEEEeC
Q psy14428 244 LRVGTAFLERFYPGVKTVYFPTPTWNGHV---RFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAM---PERSILFLQT 317 (583)
Q Consensus 244 l~l~~~~l~~~~~~gd~Vlv~~P~y~~~~---~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~---~~~~~~i~i~ 317 (583)
+.++ +..+..+||+|++++|+|.... ..++..|++++.+ . ++ ++.+|++.+++.+... .+++++++++
T Consensus 66 ~~~~---~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v-~-~~-~~~~d~~~l~~~i~~~~~~~~~~~~v~~~ 139 (347)
T 1jg8_A 66 NQVS---IMAHTQRGDEVILEADSHIFWYEVGAMAVLSGVMPHPV-P-GK-NGAMDPDDVRKAIRPRNIHFPRTSLIAIE 139 (347)
T ss_dssp HHHH---HHHHCCTTCEEEEETTCHHHHSSTTHHHHHTCCEEEEE-C-EE-TTEECHHHHHHHSCCSCTTSCCEEEEEEE
T ss_pred HHHH---HHHhcCCCCEEEEcCcchhhhccccchhhccCeEEEEe-c-CC-CCccCHHHHHHHhccccccccCceEEEEe
Confidence 8764 4455677999999999986532 3567789999888 4 33 3457999998887421 1268999999
Q ss_pred CCCCCC-CCCCCHHHHHHHHHHHHhcCeEEEEeccCCCC--CCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccc
Q psy14428 318 SSHNPT-GVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGL--TSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERV 394 (583)
Q Consensus 318 ~p~NPT-G~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l--~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRi 394 (583)
+||||| |.+++.+++++|+++|+++|++||+|++|... .+.+ .+ ...+....+.+ +.||||.++++ +
T Consensus 140 ~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~--~~---~~~~~~~~d~~--~~s~sK~l~~~---~ 209 (347)
T 1jg8_A 140 NTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASG--VP---VKEYAGYADSV--MFCLSKGLCAP---V 209 (347)
T ss_dssp SSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHC--CC---HHHHHHTCSEE--EEESSSTTCCS---S
T ss_pred ccccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcC--CC---hHHhcccccEE--EEecccccCCC---c
Confidence 999999 99999999999999999999999999987421 1111 11 22222233433 34899998743 7
Q ss_pred eE-EEEEcCCchhHHHHHHHHHHHHhccccCC--ChHHHHHHHHHhCC--hhhhhhhhhHHHHHHHHHHHHhhccC--CC
Q psy14428 395 GT-FSVLTPTSDETERIMSQLKILIRGFYSNP--PIHGARIVTEILSD--PKLKAQCDETERIMSQLKILIRGFYS--NP 467 (583)
Q Consensus 395 G~-lv~~~p~~~~~~~li~~l~~~~~~~~~~~--s~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~l~~~~r~~~~--~~ 467 (583)
|| +++ + +++++++...+.....+. +.+.+.++...++. ..+++..++.+.+.+.++++ .+. ..
T Consensus 210 G~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~---~~~~~~~ 279 (347)
T 1jg8_A 210 GSVVVG--D-----RDFIERARKARKMLGGGMRQAGVLAAAGIIALTKMVDRLKEDHENARFLALKLKEI---GYSVNPE 279 (347)
T ss_dssp CEEEEE--C-----HHHHHHHHHHHHHHTCCCSSTHHHHHHHHHHHHHSSTTHHHHHHHHHHHHHHHHHH---TCBCCGG
T ss_pred eEEEEc--C-----HHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CceeccC
Confidence 85 455 4 578888876654443222 44555554444432 22333222222333333332 232 24
Q ss_pred ccchhhHHHHhc
Q psy14428 468 PIHGARIVTEIL 479 (583)
Q Consensus 468 p~~g~~i~~~~l 479 (583)
|..++++|..+.
T Consensus 280 ~~~~~~~~~~~~ 291 (347)
T 1jg8_A 280 DVKTNMVILRTD 291 (347)
T ss_dssp GCCSSEEEEECT
T ss_pred CCcceEEEEEcc
Confidence 567777777664
|
| >4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.9e-23 Score=219.53 Aligned_cols=282 Identities=13% Similarity=0.147 Sum_probs=186.8
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCC-CCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCC
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNL-DHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGIS 239 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~-~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G 239 (583)
.+...+|++.+.+....|. .++.+.+++.+.+.... ...+.+.....+|++.+++++. .++|++ |+|
T Consensus 37 ~g~~~lD~~~~~~~~~lg~--~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~--------~~~v~~--~~g 104 (406)
T 4adb_A 37 QGKEYIDFAGGIAVNALGH--AHPELREALNEQASKFWHTGNGYTNEPVLRLAKKLIDATF--------ADRVFF--CNS 104 (406)
T ss_dssp TCCEEEESSHHHHTCTTCB--TCHHHHHHHHHHHTTCSCCCTTSCCHHHHHHHHHHHHHSS--------CSEEEE--ESS
T ss_pred CCCEEEECCCchhhcccCC--CCHHHHHHHHHHHHhcccccCCcCCHHHHHHHHHHHhhCC--------CCeEEE--eCc
Confidence 3456789988865544453 35788888887775421 1111233335666666666642 358999 999
Q ss_pred chhHHHHHHHHHHHh----C-CCCCEEEEcCCCChhhHHHHhhcCC-------------eEEEEecccCCCCCCChhhHH
Q psy14428 240 GSGSLRVGTAFLERF----Y-PGVKTVYFPTPTWNGHVRFCTDSRL-------------NVGAYRYFDNKTNGLDFAGMM 301 (583)
Q Consensus 240 ~~~al~l~~~~l~~~----~-~~gd~Vlv~~P~y~~~~~~~~~~G~-------------~~~~v~~~d~~~~g~d~~~l~ 301 (583)
+++|+.++..++... . +++|.|++++|+|..+.......+. .+..+|. .|++.++
T Consensus 105 g~~a~~~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~ 177 (406)
T 4adb_A 105 GAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAY-------NDINSAS 177 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECT-------TCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCC-------CcHHHHH
Confidence 999999864332211 0 3249999999999988655554443 3334433 2677776
Q ss_pred HHHHcCCCCcEEEEeCCCCCCCCCCC--CHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEE
Q psy14428 302 EDIKAMPERSILFLQTSSHNPTGVDL--SEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCL 379 (583)
Q Consensus 302 ~~l~~~~~~~~~i~i~~p~NPTG~~~--s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~ 379 (583)
+.+ .+++++++++ |+||||.++ +.+++++|+++|+++|++||+||+|.+|.+.+. ..+...+ +...+++
T Consensus 178 ~~l---~~~~~~v~~~-p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~---~~~~~~~-~~~~d~~- 248 (406)
T 4adb_A 178 ALI---DDSTCAVIVE-PIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGE---LYAYMHY-GVTPDLL- 248 (406)
T ss_dssp TTC---STTEEEEEEC-SEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSS---SSHHHHH-TCCCSEE-
T ss_pred HHh---cCCeEEEEEe-CCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccch---hHHHHhc-CCCCCEE-
Confidence 665 4678888887 999999999 999999999999999999999999998877652 2223222 3334555
Q ss_pred EecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhC---ChhhhhhhhhHHH-HHHH
Q psy14428 380 AQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILS---DPKLKAQCDETER-IMSQ 455 (583)
Q Consensus 380 i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~-~~~~ 455 (583)
||||.++ +|+|+||+++ + +++++.+........++.+.+.|.++...++ ++.+.++..+.++ +.+.
T Consensus 249 --t~sK~~~-~G~r~G~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~ 318 (406)
T 4adb_A 249 --TTAKALG-GGFPVGALLA--T-----EECARVMTVGTHGTTYGGNPLASAVAGKVLELINTPEMLNGVKQRHDWFVER 318 (406)
T ss_dssp --EECGGGG-TTSCCEEEEE--C-----HHHHHTCCTTSSCCSSTTCHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHH
T ss_pred --Eechhhc-CCCCeEEEEE--c-----HHHHhhhccCCcCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 7799999 9999999999 6 5788888776666677889999999887765 3333333333332 2222
Q ss_pred HHHHHhh--ccCCCccchhhHHHHhcC
Q psy14428 456 LKILIRG--FYSNPPIHGARIVTEILS 480 (583)
Q Consensus 456 l~~~~r~--~~~~~p~~g~~i~~~~l~ 480 (583)
++.+... .+...+..|.+++..+..
T Consensus 319 l~~~~~~~~~~~~~~~~g~~~~~~~~~ 345 (406)
T 4adb_A 319 LNTINHRYGLFSEVRGLGLLIGCVLNA 345 (406)
T ss_dssp HHHHHHHHCCEEEEEEETTEEEEEECT
T ss_pred HHHHHHhCCCceEEEEEEEEEEEEEeC
Confidence 3332211 112233456666666544
|
| >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.3e-22 Score=211.36 Aligned_cols=230 Identities=12% Similarity=0.079 Sum_probs=172.4
Q ss_pred ccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCC--CCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchh
Q psy14428 165 KMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYA--NIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSG 242 (583)
Q Consensus 165 ~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~--~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~ 242 (583)
...++.++|+.. .+++..+.+.+++.........+.|. +..+..+|+++++++++. ++.++ +++|++
T Consensus 22 ~~~~~~~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~--------~~~i~--~~sG~~ 90 (398)
T 2rfv_A 22 PSTGALSTPIFQ-TSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDALEKKLAVLERG--------EAGLA--TASGIS 90 (398)
T ss_dssp TTTCCSSCCCCC-CSBCCCSSHHHHHHHC-----CCSBTTTCCHHHHHHHHHHHHHHTC--------SEEEE--ESSHHH
T ss_pred cCCCCcCCCCcC-CCccccCCHHHHHHhhcCCCCCCceeCCCChHHHHHHHHHHHHhCC--------CcEEE--ECCHHH
Confidence 346788888754 33445667777665221111234444 456678899999998852 13444 445559
Q ss_pred HHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHH----hhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCC
Q psy14428 243 SLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFC----TDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTS 318 (583)
Q Consensus 243 al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~----~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~ 318 (583)
|+.++ +..+..+||+|++++|+|..+...+ +..|++++.++. + |++.+++.+ .++++++++++
T Consensus 91 a~~~~---l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~-~------d~~~l~~~i---~~~~~~v~~~~ 157 (398)
T 2rfv_A 91 AITTT---LLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDA-A------KPEEIRAAM---RPETKVVYIET 157 (398)
T ss_dssp HHHHH---HHHHCCTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECT-T------SHHHHHHHC---CTTEEEEEEES
T ss_pred HHHHH---HHHHhCCCCEEEEcCCCcccHHHHHHHHHHHcCCEEEEeCC-C------CHHHHHHhc---CCCCeEEEEEC
Confidence 99885 4445667999999999999988876 788999999887 2 788888877 56789999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccc-eEE
Q psy14428 319 SHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERV-GTF 397 (583)
Q Consensus 319 p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRi-G~l 397 (583)
||||||.+++ +++|+++|+++|+++|+||+|..+.+.. ++ ..+..+++.|+||.++.||+|+ ||+
T Consensus 158 ~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~------~~-----~~~~di~~~s~sK~~~~~g~~~~G~~ 223 (398)
T 2rfv_A 158 PANPTLSLVD---IETVAGIAHQQGALLVVDNTFMSPYCQQ------PL-----QLGADIVVHSVTKYINGHGDVIGGII 223 (398)
T ss_dssp SBTTTTBCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCC------GG-----GGTCSEEEEETTTTTTCSSCCCCEEE
T ss_pred CCCCCCcccC---HHHHHHHHHHcCCEEEEECCCcccccCC------ch-----hhCCcEEEEeCcccccCCCCceEEEE
Confidence 9999999997 7788999999999999999999877642 11 1257799999999999999999 999
Q ss_pred EEEcCCchhHHHHHH-HHHHHHhcc-ccCCChHHHHHHHHHhCC
Q psy14428 398 SVLTPTSDETERIMS-QLKILIRGF-YSNPPIHGARIVTEILSD 439 (583)
Q Consensus 398 v~~~p~~~~~~~li~-~l~~~~~~~-~~~~s~~~q~~~~~~l~~ 439 (583)
++ + +++++ .+....... ..+.+.+.|.++...++.
T Consensus 224 ~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 260 (398)
T 2rfv_A 224 VG--K-----QEFIDQARFVGLKDITGGCMSPFNAWLTLRGVKT 260 (398)
T ss_dssp EE--C-----HHHHHHHHHTHHHHTTCCCCCHHHHHHHHHHHTT
T ss_pred EE--C-----HHHHHHHHHHHHHhCCCCCCCHHHHHHHHhhhhh
Confidence 99 6 46776 566555544 567889999999888875
|
| >1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.9e-23 Score=215.54 Aligned_cols=190 Identities=15% Similarity=0.097 Sum_probs=146.2
Q ss_pred CChHHHHHHHHHhccCC-------CCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHH-
Q psy14428 182 VLPSVKEAERRIYEKNL-------DHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLER- 253 (583)
Q Consensus 182 ~~~~v~~a~~~~~~~~~-------~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~- 253 (583)
+++.+.+++.+...+.. ...|.+..|..+||++++++++ +++++|++ |+|+++|+.++...+..
T Consensus 13 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g------~~~~~v~~--~~g~t~a~~~~~~~~~~~ 84 (384)
T 1eg5_A 13 VDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLG------VSPSEIFF--TSCATESINWILKTVAET 84 (384)
T ss_dssp CCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHT------SCGGGEEE--ESCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHcC------CCCCeEEE--ECCHHHHHHHHHHhhhhh
Confidence 56788888877765310 0113345677999999999995 45789999 99999999986433211
Q ss_pred hCCCCCEEEEcCCCChhhHHHH---hhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHH
Q psy14428 254 FYPGVKTVYFPTPTWNGHVRFC---TDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSED 330 (583)
Q Consensus 254 ~~~~gd~Vlv~~P~y~~~~~~~---~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~ 330 (583)
...+||+|++++|+|+.+...+ +..|++++.+|+ ++ ++.+|++.+++.+ .++++++++++||||||.+++
T Consensus 85 ~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~-~~-~~~~d~~~l~~~i---~~~~~~v~~~~~~nptG~~~~-- 157 (384)
T 1eg5_A 85 FEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPV-DS-RGVVKLEELEKLV---DEDTFLVSIMAANNEVGTIQP-- 157 (384)
T ss_dssp TTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCB-CT-TSCBCHHHHHHHC---CTTEEEEEEESBCTTTCBBCC--
T ss_pred ccCCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEcc-CC-CCccCHHHHHHHh---CCCCeEEEEECCCCCcccccC--
Confidence 0156999999999999886655 778999999998 54 4668999998887 457899999999999999999
Q ss_pred HHHHHHHHHHhcC--eEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEE
Q psy14428 331 QWRQLAVVVKQRH--LYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSV 399 (583)
Q Consensus 331 ~~~~l~~~a~~~~--i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~ 399 (583)
+++|.++|++++ ++||+||+|. + +.. + ..+ ...+..+++.|+||.+|++| +||+++
T Consensus 158 -~~~i~~l~~~~~~~~~li~Dea~~-~--~~~--~-~~~----~~~~~di~~~s~sK~~g~~G--~G~~~~ 215 (384)
T 1eg5_A 158 -VEDVTRIVKKKNKETLVHVDAVQT-I--GKI--P-FSL----EKLEVDYASFSAHKFHGPKG--VGITYI 215 (384)
T ss_dssp -HHHHHHHHHHHCTTCEEEEECTTT-T--TTS--C-CCC----TTTCCSEEEEEGGGGTSCTT--CEEEEE
T ss_pred -HHHHHHHHHhcCCceEEEEEhhhh-c--CCc--c-cCc----hhcCCCEEEecHHHhcCCCc--eEEEEE
Confidence 567788899999 9999999997 2 221 1 111 12246789999999999889 799999
|
| >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=9e-23 Score=214.11 Aligned_cols=210 Identities=11% Similarity=0.042 Sum_probs=155.3
Q ss_pred CccccCCccccCCCCCCCCChHHHHHHHHHhccCC---CC---CCCC-CCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEe
Q psy14428 164 KKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNL---DH---EYAN-IGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQ 236 (583)
Q Consensus 164 ~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~---~~---~Y~~-~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~ 236 (583)
+.+.|..+.+. + +++.+.+++.+.+.... .. .|++ ..+..+||++++++++ +++++|++
T Consensus 16 ~~i~l~~~~~~-----~-~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~la~~~g------~~~~~v~~-- 81 (390)
T 1elu_A 16 NKTYFNFGGQG-----I-LPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFN------VDPNTITI-- 81 (390)
T ss_dssp TSEECCTTTCC-----C-CCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTT------SCGGGEEE--
T ss_pred CeEEecCCccC-----C-CCHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHcC------CCHHHEEE--
Confidence 45666665431 1 34677777776664311 11 3544 4788999999999974 45779999
Q ss_pred cCCchhHHHHHHHHHHHh-CCCCCEEEEcCCCChhhHHH----HhhcCCeEEEEecccC-CCCCCChhhHHHHHHcCCCC
Q psy14428 237 GISGSGSLRVGTAFLERF-YPGVKTVYFPTPTWNGHVRF----CTDSRLNVGAYRYFDN-KTNGLDFAGMMEDIKAMPER 310 (583)
Q Consensus 237 t~G~~~al~l~~~~l~~~-~~~gd~Vlv~~P~y~~~~~~----~~~~G~~~~~v~~~d~-~~~g~d~~~l~~~l~~~~~~ 310 (583)
|+|+++++.++ +..+ ..+||+|++++|+|..+... ++..|++++.+|+ +. +++.+|++.+++.+ .++
T Consensus 82 ~~g~t~a~~~~---~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~-~~~~~~~~d~~~l~~~i---~~~ 154 (390)
T 1elu_A 82 TDNVTTGCDIV---LWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPV-AATLNQGDAAAVLANHL---GPK 154 (390)
T ss_dssp ESSHHHHHHHH---HHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECC-GGGSSSSCHHHHHHTTC---CTT
T ss_pred eCChHHHHHHH---HhCCCCCCCCEEEEecCcccHHHHHHHHHHHHhCcEEEEEcC-CCCCCccchHHHHHHhc---CCC
Confidence 99999999985 4455 56799999999999997654 4667999999998 42 34678888887766 467
Q ss_pred cEEEEeCCCCCCCCCCCCHHHHHHHHHHHH----hcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCccc
Q psy14428 311 SILFLQTSSHNPTGVDLSEDQWRQLAVVVK----QRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKN 386 (583)
Q Consensus 311 ~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~----~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~ 386 (583)
++++++++||||||.+++ +++|.++|+ ++|++||+||+|...... ..+ +..+..+++.|+||.
T Consensus 155 ~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~~~~~li~Dea~~~g~~~------~~~----~~~~~d~~~~s~~K~ 221 (390)
T 1elu_A 155 TRLVILSHLLWNTGQVLP---LAEIMAVCRRHQGNYPVRVLVDGAQSAGSLP------LDF----SRLEVDYYAFTGHKW 221 (390)
T ss_dssp EEEEEEESBCTTTCCBCC---HHHHHHHHHHCCSSSCCEEEEECTTTBTTBC------CCT----TTSCCSEEEEESSST
T ss_pred ceEEEEeccccCCceecC---HHHHHHHHhhhhhhcCcEEEEEcccccCCcC------CCh----hhcCCCEEEcccccc
Confidence 899999999999999999 677788899 999999999999743221 011 223567899999994
Q ss_pred ccccCccceEEEEEcCCchhHHHHHHHHH
Q psy14428 387 MGLYGERVGTFSVLTPTSDETERIMSQLK 415 (583)
Q Consensus 387 ~~l~GlRiG~lv~~~p~~~~~~~li~~l~ 415 (583)
+ ..|.++||+++ ++ ++++++.
T Consensus 222 ~-~~~~g~G~~~~--~~-----~~~~~~~ 242 (390)
T 1elu_A 222 F-AGPAGVGGLYI--HG-----DCLGEIN 242 (390)
T ss_dssp T-CCCTTCEEEEE--CT-----TTGGGCC
T ss_pred c-cCCCceEEEEE--CH-----HhHhhcC
Confidence 4 36778999999 63 4555544
|
| >1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=2.7e-23 Score=215.45 Aligned_cols=223 Identities=13% Similarity=0.020 Sum_probs=163.6
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
..|..++|+.+... .+++.+.+++.+... +|.+..|..++++++++++.+.+| .++++|++ |+|+
T Consensus 11 ~~p~~i~l~~~~~~------~~~~~v~~a~~~~~~-----~~~~~~g~~~~~~~~~~~l~~~~g--~~~~~v~~--~~g~ 75 (359)
T 1svv_A 11 AKPKPYSFVNDYSV------GMHPKILDLMARDNM-----TQHAGYGQDSHCAKAARLIGELLE--RPDADVHF--ISGG 75 (359)
T ss_dssp ----CEECSCSCSS------CCCHHHHHHHHHHTT-----CCCCSTTCSHHHHHHHHHHHHHHT--CTTSEEEE--ESCH
T ss_pred CCCeeEEecCCCcC------CCCHHHHHHHHHHHh-----hccccccccHHHHHHHHHHHHHhC--CCCccEEE--eCCc
Confidence 34567888875542 256788888877653 477778888999999999887666 56789999 9999
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHH--HHhhcCCeEEEEecccCCCCCCChhhHHHHHHcC----CCCcEEE
Q psy14428 241 SGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVR--FCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAM----PERSILF 314 (583)
Q Consensus 241 ~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~--~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~----~~~~~~i 314 (583)
++|+.++ +..+..+||+|++++|+|..+.. .++..|++++.+|. + ++++|++.+++.+++. ..+++++
T Consensus 76 t~a~~~~---~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~-~--~~~~d~~~l~~~l~~~~~~~~~~~~~v 149 (359)
T 1svv_A 76 TQTNLIA---CSLALRPWEAVIATQLGHISTHETGAIEATGHKVVTAPC-P--DGKLRVADIESALHENRSEHMVIPKLV 149 (359)
T ss_dssp HHHHHHH---HHHHCCTTEEEEEETTSHHHHSSTTHHHHTTCCEEEECC-T--TSCCCHHHHHHHHHHSCSTTSCEEEEE
T ss_pred hHHHHHH---HHHHhCCCCEEEEcccchHHHHHHHHHhcCCCeeEEEeC-C--CCeecHHHHHHHHHHHHhccCCCceEE
Confidence 9999985 44556679999999999999877 47889999999998 4 4789999999988642 1237888
Q ss_pred EeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccc
Q psy14428 315 LQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERV 394 (583)
Q Consensus 315 ~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRi 394 (583)
++++| ||||.+++.+++++|+++|+++|++||+||+|.++..+........+. + .. ..-++..|++|..+ ...+
T Consensus 150 ~~~~~-~ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~-~-~~-~~d~~~~s~~K~g~--~~~~ 223 (359)
T 1svv_A 150 YISNT-TEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLAD-I-AR-LTDMFYIGATKAGG--MFGE 223 (359)
T ss_dssp EEESS-CTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHH-H-HH-HCSEEEEECTTTTC--SSCE
T ss_pred EEEcC-CCCceecCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcchhhhh-h-hh-cCCEEEEecccCCC--CCce
Confidence 88998 899999999999999999999999999999995442221101111111 0 01 12367788999643 3567
Q ss_pred eEEEEEcCCchhHHHHHHHHHHH
Q psy14428 395 GTFSVLTPTSDETERIMSQLKIL 417 (583)
Q Consensus 395 G~lv~~~p~~~~~~~li~~l~~~ 417 (583)
|++++ + +++++++...
T Consensus 224 g~l~~--~-----~~~~~~~~~~ 239 (359)
T 1svv_A 224 ALIIL--N-----DALKPNARHL 239 (359)
T ss_dssp EEEEC--S-----GGGCTTHHHH
T ss_pred EEEEE--c-----ccHHHHHHHH
Confidence 88888 5 3566655543
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.89 E-value=2e-22 Score=212.23 Aligned_cols=280 Identities=11% Similarity=0.080 Sum_probs=187.1
Q ss_pred CCCccccCCccccCCCCCCCCChHHHHHHHHHhccC-CCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 162 HPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKN-LDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 162 ~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~-~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
+...+|++.+.+....|. .++.+.+++.+..... ....+.+..-..+|++.++++++ ++++++ |+|+
T Consensus 35 g~~~lD~~~~~~~~~lG~--~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g--------~~~v~~--~~~g 102 (392)
T 3ruy_A 35 GNRYMDLLSAYSAVNQGH--RHPKIINALIDQANRVTLTSRAFHSDQLGPWYEKVAKLTN--------KEMVLP--MNTG 102 (392)
T ss_dssp CCEEEESSHHHHTCTTCB--TCHHHHHHHHHHHTTCSCCCTTSEETTHHHHHHHHHHHHT--------CSEEEE--ESSH
T ss_pred CCEEEEcCCChhhhccCC--CCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHHhcC--------CCEEEE--eCcH
Confidence 456788888876544443 3578888888776542 11111233445778888887763 579999 9999
Q ss_pred hhHHHHHHHHHHHh-------CCCCCEEEEcCCCChhhHHHHhhcCC-------------eEEEEecccCCCCCCChhhH
Q psy14428 241 SGSLRVGTAFLERF-------YPGVKTVYFPTPTWNGHVRFCTDSRL-------------NVGAYRYFDNKTNGLDFAGM 300 (583)
Q Consensus 241 ~~al~l~~~~l~~~-------~~~gd~Vlv~~P~y~~~~~~~~~~G~-------------~~~~v~~~d~~~~g~d~~~l 300 (583)
++|+.++..++... .+++|.|++++|+|..+...+...+. .+..++. .|++.+
T Consensus 103 t~a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l 175 (392)
T 3ruy_A 103 AEAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPY-------GDLEAL 175 (392)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEECT-------TCHHHH
T ss_pred HHHHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeeeCc-------ccHHHH
Confidence 99999874433221 02367999999999766554443322 2333433 178888
Q ss_pred HHHHHcCCCCcEEEEeCCCCCCCCCCCCHHH-HHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEE
Q psy14428 301 MEDIKAMPERSILFLQTSSHNPTGVDLSEDQ-WRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCL 379 (583)
Q Consensus 301 ~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~-~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~ 379 (583)
++.+ .++++++++++||||||.+++.++ +++|+++|+++|++||+||+|.+|.+.+. .. +... .+...++
T Consensus 176 ~~~l---~~~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~--~~-~~~~-~~~~~d~-- 246 (392)
T 3ruy_A 176 KAAI---TPNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGK--VF-ACDW-DNVTPDM-- 246 (392)
T ss_dssp HHHC---CTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSS--SS-GGGG-GTCCCSE--
T ss_pred HHHh---ccCeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcccc--ch-hhhc-cCCCCCE--
Confidence 8877 478899999999999999996665 99999999999999999999998876652 11 1111 1222333
Q ss_pred EecCcccccccC-ccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHH
Q psy14428 380 AQSFSKNMGLYG-ERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKI 458 (583)
Q Consensus 380 i~S~SK~~~l~G-lRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~ 458 (583)
.||||.++ +| +|+||+++ + +++++.+........++.+.+.|.++...++....++..++.++..+.+.+
T Consensus 247 -~~~SK~l~-gG~~~~G~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~ 317 (392)
T 3ruy_A 247 -YILGKALG-GGVFPISCAAA--N-----RDILGVFEPGSHGSTFGGNPLACAVSIAALEVLEEEKLTERSLQLGEKLVG 317 (392)
T ss_dssp -EEECGGGG-TTTSCCEEEEE--C-----HHHHTTCCTTSSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred -EEEchhhh-CChhhhEEEEE--C-----HHHHhhhccCCcCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 37899876 46 99999999 6 578887776666667788999999999888743223333333334444444
Q ss_pred HHhhc----cCCCccchhhHHHHh
Q psy14428 459 LIRGF----YSNPPIHGARIVTEI 478 (583)
Q Consensus 459 ~~r~~----~~~~p~~g~~i~~~~ 478 (583)
.++.. ....+..|.++++.+
T Consensus 318 ~L~~~~~~~~~~~~~~g~~~~~~~ 341 (392)
T 3ruy_A 318 QLKEIDNPMITEVRGKGLFIGIEL 341 (392)
T ss_dssp HHTTCCCTTEEEEEEETTEEEEEE
T ss_pred HHHHhcCCCceEEEeeeeEEEEEE
Confidence 44332 223344566666654
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-21 Score=210.32 Aligned_cols=226 Identities=12% Similarity=0.018 Sum_probs=165.0
Q ss_pred CCCCccccCCccc--cCCCC--CCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEe
Q psy14428 161 PHPKKMNLGVGAY--RGEDG--KPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQ 236 (583)
Q Consensus 161 ~~~~~i~l~~g~~--~~~~~--~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~ 236 (583)
++.+.++++.|.+ |...+ +..+.+.+.+++. .. ...|.+..|..+||++++++++. +++++
T Consensus 31 ~g~~~~~l~~~~~ylD~~~~~~~~~~~~~~~~a~~----~~-~~~y~~~~~~~~l~~~la~~~~~--------~~~~~-- 95 (456)
T 2ez2_A 31 AGYNTFLLNSKDIYIDLLTDSGTNAMSDKQWAGMM----MG-DEAYAGSENFYHLERTVQELFGF--------KHIVP-- 95 (456)
T ss_dssp TTTCGGGSCGGGCSEECSCSSSCCCCCHHHHHHHT----TC-CCCSSSCHHHHHHHHHHHHHHCC--------SEEEE--
T ss_pred CCCCcccCCcccceeeeccccCCccCCHHHHHHhh----cc-hhhcccChhHHHHHHHHHHHhCC--------CcEEE--
Confidence 4556777877765 32111 1112345554443 22 34688888999999999999963 37888
Q ss_pred cCCchhHHHHHHHHHHHhCCCCCEEEEcCCCC-hhhHHHHhhcCCeEEEEecccCC---------CCCCChhhHHHHHHc
Q psy14428 237 GISGSGSLRVGTAFLERFYPGVKTVYFPTPTW-NGHVRFCTDSRLNVGAYRYFDNK---------TNGLDFAGMMEDIKA 306 (583)
Q Consensus 237 t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y-~~~~~~~~~~G~~~~~v~~~d~~---------~~g~d~~~l~~~l~~ 306 (583)
|+||++|+.++ +..+..+|| ++++|+| ..+...++..|++++.+++ +++ ++++|++.+++.+..
T Consensus 96 ~~~gt~a~~~a---l~~l~~~gd--i~~~~~~~~~~~~~~~~~G~~~~~v~~-~~~~~~~~~~~~~~~~d~~~l~~~i~~ 169 (456)
T 2ez2_A 96 THQGRGAENLL---SQLAIKPGQ--YVAGNMYFTTTRYHQEKNGAVFVDIVR-DEAHDAGLNIAFKGDIDLKKLQKLIDE 169 (456)
T ss_dssp ESSHHHHHHHH---HHHHCCTTC--EEEESSCCHHHHHHHHHTTCEEEECBC-GGGGCTTCCCSCTTCBCHHHHHHHHHH
T ss_pred eCCcHHHHHHH---HHHhCCCCC--EeccccccchhHHHHHHcCCEEEEecc-cccccccccccccCCCCHHHHHHHHHh
Confidence 99999999985 344567799 8889999 8888899999999999998 421 267899999998854
Q ss_pred CC-CCcEEEEeCCCCC-CCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCC----------CCCCCCCCchHHHHHHHHhc
Q psy14428 307 MP-ERSILFLQTSSHN-PTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLG----------LTSGDFDKDAFSLRYFAKEV 374 (583)
Q Consensus 307 ~~-~~~~~i~i~~p~N-PTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~----------l~~~~~~~~~~~~~~~~~~~ 374 (583)
.+ .+.+++++++|+| |||.+++.+++++|+++|+++|++||+||+|.. +.+.+ ....++.......
T Consensus 170 ~t~~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g--~~~~~~~~~~~~~ 247 (456)
T 2ez2_A 170 KGAENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFEN--KSIAEIVHEMFSY 247 (456)
T ss_dssp HCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTT--SCHHHHHHHHHTT
T ss_pred ccccceeEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCC--cchhhhhhhhccc
Confidence 32 2348899999999 999999999999999999999999999999986 55654 2222222111233
Q ss_pred CcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHH
Q psy14428 375 GQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILI 418 (583)
Q Consensus 375 ~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~ 418 (583)
.+++++ |++|..+ +| |.||+++ ++ +++++++....
T Consensus 248 ~d~~~~-S~kk~~~-~~-~gG~~~~--~~----~~~~~~~~~~~ 282 (456)
T 2ez2_A 248 ADGCTM-SGKKDCL-VN-IGGFLCM--ND----DEMFSSAKELV 282 (456)
T ss_dssp CSEEEE-ETTTTTC-CS-SCEEEEE--SC----HHHHHHHHHHH
T ss_pred CCEEEE-eCcccCC-CC-ceeEEEE--CC----HHHHHHHHHHH
Confidence 456666 7888765 77 8999998 54 46777776654
|
| >2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=4.1e-21 Score=202.81 Aligned_cols=263 Identities=13% Similarity=0.025 Sum_probs=175.5
Q ss_pred ChHHHHHHHHHhcc-CC-----CCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCC
Q psy14428 183 LPSVKEAERRIYEK-NL-----DHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYP 256 (583)
Q Consensus 183 ~~~v~~a~~~~~~~-~~-----~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~ 256 (583)
++.+.+++.+.+.. .. ...|+...+..+||+++|++++. +++|++ |+|++ +...+..++... .
T Consensus 62 ~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~-------~~~i~~--~sG~~-a~~~~~~~l~~~-~ 130 (401)
T 2bwn_A 62 HPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQK-------EAALVF--SSAYN-ANDATLSTLRVL-F 130 (401)
T ss_dssp CHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTTC-------SEEEEE--SCHHH-HHHHHHHHHHHH-S
T ss_pred CHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHhCC-------CcEEEE--CCcHH-HHHHHHHHHhcC-C
Confidence 35677777766654 11 23466677899999999999852 478888 98887 555432222112 3
Q ss_pred CCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCC-CCcEEEEeCCCCCCCCCCCCHHHHHHH
Q psy14428 257 GVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMP-ERSILFLQTSSHNPTGVDLSEDQWRQL 335 (583)
Q Consensus 257 ~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~-~~~~~i~i~~p~NPTG~~~s~~~~~~l 335 (583)
+||.|++++|+|..+...++..|++++.+|. + |++.+++.+++.. ++++++++++|+||||.+++ +++|
T Consensus 131 ~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~-~------d~~~le~~l~~~~~~~~~~v~~~~~~nptG~~~~---l~~i 200 (401)
T 2bwn_A 131 PGLIIYSDSLNHASMIEGIKRNAGPKRIFRH-N------DVAHLRELIAADDPAAPKLIAFESVYSMDGDFGP---IKEI 200 (401)
T ss_dssp TTCEEEEETTCCHHHHHHHHHSCCCEEEECT-T------CHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCC---HHHH
T ss_pred CCCEEEECchhhHHHHHHHHHcCCeEEEEcC-C------CHHHHHHHHHhhccCCceEEEEecCcCCCCCcCC---HHHH
Confidence 5999999999999999999999999999887 2 6788888886544 47889999999999999998 6788
Q ss_pred HHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHh-cCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHH
Q psy14428 336 AVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKE-VGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQL 414 (583)
Q Consensus 336 ~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~-~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l 414 (583)
+++|++++++||+||+|....++.. ....+ ...+. ...+++++||||+++++| ||+++ + +++++.+
T Consensus 201 ~~l~~~~~~~li~Dea~~~g~~~~~--g~~~~-~~~~~~~~~~i~~~s~sK~~~~~G---G~~~~--~-----~~~~~~l 267 (401)
T 2bwn_A 201 CDIAEEFGALTYIDEVHAVGMYGPR--GAGVA-ERDGLMHRIDIFNGTLAKAYGVFG---GYIAA--S-----ARMVDAV 267 (401)
T ss_dssp HHHHHHHTCEEEEECTTTTTTSSTT--SCCHH-HHHTCGGGCSEEEEESSSTTCSCC---EEEEE--C-----HHHHHHH
T ss_pred HHHHHHcCCEEEEeccccccccCCC--Cceee-eccCccccCcEEEeechhhccCCC---CEEec--C-----HHHHHHH
Confidence 9999999999999999996554321 11112 21121 134799999999999989 99999 6 5788887
Q ss_pred HHHHhc--cccCCChHHHHHHHHHh---CChhhhhhhhhHHHHHHHHHHHHhh-ccCCCccchhhHHHHhc
Q psy14428 415 KILIRG--FYSNPPIHGARIVTEIL---SDPKLKAQCDETERIMSQLKILIRG-FYSNPPIHGARIVTEIL 479 (583)
Q Consensus 415 ~~~~~~--~~~~~s~~~q~~~~~~l---~~~~~~~~~~~~~~~~~~l~~~~r~-~~~~~p~~g~~i~~~~l 479 (583)
...... ...+.+.+.|.++...+ ++..+++..++.++..+.+.+.++. .+...+..+.++|+.+.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~ 338 (401)
T 2bwn_A 268 RSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKALGMPIIDHGSHIVPVVIG 338 (401)
T ss_dssp HHHCHHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHTCCBCCCSSSCEEEECC
T ss_pred HHhCcCceecCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHCCCcccCCCCCeEEEEeC
Confidence 754322 12334557776555544 3332233333333322222222221 34433344556666543
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.1e-22 Score=215.03 Aligned_cols=296 Identities=11% Similarity=0.035 Sum_probs=182.5
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
.+...+|++.+.+....|. .++.+.+++.+.++. ...|.+..+..++++++++++.+..+ ..+++|++ |+|+
T Consensus 27 ~g~~~lD~~~~~~~~~lG~--~~p~v~~a~~~~~~~--~~~~~~~~~~~~~~~~l~~~la~~~~--~~~~~v~~--~~gg 98 (430)
T 3i4j_A 27 AGRRYLDGSSGALVANIGH--GRAEVGERMAAQAAR--LPFVHGSQFSSDVLEEYAGRLARFVG--LPTFRFWA--VSGG 98 (430)
T ss_dssp TSCEEEETTHHHHTCTTCB--CCHHHHHHHHHHHHH--CCCCCTTTCEEHHHHHHHHHHHHHTT--CTTCEEEE--ESSH
T ss_pred CCCEEEECCCchhccccCC--CCHHHHHHHHHHHHh--cccccccccCCHHHHHHHHHHHHhCC--CCCCEEEE--eCcH
Confidence 3456789988876655664 257888887776654 23455556667777777777776544 45679999 9999
Q ss_pred hhHHHHHHHHHHHh-----CCCCCEEEEcCCCChhhHHHHhhcCC---------------eEEEEecccCC--CCCCChh
Q psy14428 241 SGSLRVGTAFLERF-----YPGVKTVYFPTPTWNGHVRFCTDSRL---------------NVGAYRYFDNK--TNGLDFA 298 (583)
Q Consensus 241 ~~al~l~~~~l~~~-----~~~gd~Vlv~~P~y~~~~~~~~~~G~---------------~~~~v~~~d~~--~~g~d~~ 298 (583)
++|+..+..++... .++++.|++.+|+|..+.......+. .+..+|. +.. ....|++
T Consensus 99 ~ea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 177 (430)
T 3i4j_A 99 SEATESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPK-PDPARNGAEDAE 177 (430)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTCCEEEEETTC-------------------------CGGGSCEECC-CCTTSCHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceEcCC-CcccchhhHHHH
Confidence 99999874443222 03478999999999988765554443 2222332 100 0012457
Q ss_pred hHHHHHHcCC-CCcEEEEeCCCCC-CCCC-CCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcC
Q psy14428 299 GMMEDIKAMP-ERSILFLQTSSHN-PTGV-DLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVG 375 (583)
Q Consensus 299 ~l~~~l~~~~-~~~~~i~i~~p~N-PTG~-~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~ 375 (583)
.+++.+++.. ++++++++..+|| |+|. +++++++++|.++|++||++||+||+|.+|...+. ..+...+. +
T Consensus 178 ~le~~l~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g~---~~~~~~~~---~ 251 (430)
T 3i4j_A 178 GLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGS---PLALSRWS---G 251 (430)
T ss_dssp HHHHHHHHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSGGGGTT---T
T ss_pred HHHHHHHhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccc---hhhhhhhc---C
Confidence 8888875432 3445555544455 7886 77899999999999999999999999999976551 11211110 1
Q ss_pred cEEEEecCcccccccC-ccceEEEEEcCCchhHHHHHHHHHHH----HhccccCCChHHHHHHHHHhCC---hhhhhhhh
Q psy14428 376 QLCLAQSFSKNMGLYG-ERVGTFSVLTPTSDETERIMSQLKIL----IRGFYSNPPIHGARIVTEILSD---PKLKAQCD 447 (583)
Q Consensus 376 ~vi~i~S~SK~~~l~G-lRiG~lv~~~p~~~~~~~li~~l~~~----~~~~~~~~s~~~q~~~~~~l~~---~~~~~~~~ 447 (583)
....+.+|||.++ .| +|+||+++ + +++++.+.+. .....++.++++|.++..+++. +.+.++..
T Consensus 252 ~~~di~t~sK~l~-~G~~r~G~~~~--~-----~~i~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~ 323 (430)
T 3i4j_A 252 VTPDIAVLGKGLA-AGYAPLAGLLA--A-----PQVYETVMGGSGAFMHGFTYAGHPVSVAAGLSVLDIVEREDLTGAAK 323 (430)
T ss_dssp CCCSEEEECGGGT-TTSSCCEEEEE--C-----HHHHHHHHHTTCBCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred CCCcEEEEccccc-CCccccEEEEE--C-----HHHHHHHhccCCcccccCCCCCCHHHHHHHHHHHHHHHcccHHHHHH
Confidence 2222347999999 69 99999999 7 6899998874 3445568899999998888863 22322222
Q ss_pred hHH-HHHHHHHHHHhh--ccCCCccchhhHHHHhc
Q psy14428 448 ETE-RIMSQLKILIRG--FYSNPPIHGARIVTEIL 479 (583)
Q Consensus 448 ~~~-~~~~~l~~~~r~--~~~~~p~~g~~i~~~~l 479 (583)
+.. ...+.++.+... .+...+..|.++++.+.
T Consensus 324 ~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~ 358 (430)
T 3i4j_A 324 ERGAQLLAGLQALQARFPQMMQVRGTGLLLGVVLG 358 (430)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEec
Confidence 222 222333333211 23345667888887664
|
| >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.9e-21 Score=207.62 Aligned_cols=237 Identities=14% Similarity=0.085 Sum_probs=167.1
Q ss_pred CCCccccCCccccCCCCCCCCChHHHHHHHHHhcc-CC-CCCCCCCCC----CHHHHHHHHHHHhCCCCCCCCCCCeEEE
Q psy14428 162 HPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEK-NL-DHEYANIGG----DAKFCKLAAQLAYGEDFPAFKDNRLAIV 235 (583)
Q Consensus 162 ~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~-~~-~~~Y~~~~G----~~~Lr~aia~~~~~~~g~~~~~~~I~i~ 235 (583)
+...+||+.+.+ .+.+ +++.+.+++.+.+.. +. ...|....| ..+|+++++++++. ++.|++
T Consensus 63 g~~~id~~~~~~---lg~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~la~~~g~-------~~~i~~- 130 (427)
T 2w8t_A 63 GKDTILLGTYNY---MGMT-FDPDVIAAGKEALEKFGSGTCGSRMLNGTFHDHMEVEQALRDFYGT-------TGAIVF- 130 (427)
T ss_dssp TEEEEECSCCCT---TCGG-GCHHHHHHHHHHHHHHCSCCCSCTTTTCCCHHHHHHHHHHHHHHTC-------SEEEEE-
T ss_pred CceEEEEECccc---ccCC-CCHHHHHHHHHHHHHhCCCCcccccccCCcHHHHHHHHHHHHHhCC-------CceEEe-
Confidence 446789998864 1211 446777777766654 21 222333444 48899999999842 244554
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCC-CcEEE
Q psy14428 236 QGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPE-RSILF 314 (583)
Q Consensus 236 ~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~-~~~~i 314 (583)
++| ++++..+ +..+..+||.|+++.|+|..+...++..|++++.++. .|++.+++.+++..+ +++++
T Consensus 131 -~sG-s~a~~~a---l~~l~~~gd~vl~~~~~h~~~~~~~~~~g~~~~~~~~-------~d~~~le~~l~~~~~~~~~~v 198 (427)
T 2w8t_A 131 -STG-YMANLGI---ISTLAGKGEYVILDADSHASIYDGCQQGNAEIVRFRH-------NSVEDLDKRLGRLPKEPAKLV 198 (427)
T ss_dssp -SCH-HHHHHHH---HHHHSCTTCEEEEETTCCHHHHHHHHHSCSEEEEECT-------TCHHHHHHHHHTSCSSSCEEE
T ss_pred -cCc-HHHHHHH---HHHhcCCCCEEEECCcccHHHHHHHHHcCCeeEEeCC-------CCHHHHHHHHHhccCCCCeEE
Confidence 554 5577764 4446677999999999999999999999999988764 288999998875433 68899
Q ss_pred EeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHH-hcCcEEEEecCcccccccCcc
Q psy14428 315 LQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAK-EVGQLCLAQSFSKNMGLYGER 393 (583)
Q Consensus 315 ~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~-~~~~vi~i~S~SK~~~l~GlR 393 (583)
++++++||||.+++ +++|+++|+++|++||+||+|..+.++.. ..++....+ ..+.++++.||||.+|++|
T Consensus 199 ~~~~~~n~tG~~~~---l~~l~~l~~~~g~~li~Dea~~~~~~~~~---g~~~~~~~~~~~~~di~~~s~sK~~g~~g-- 270 (427)
T 2w8t_A 199 VLEGVYSMLGDIAP---LKEMVAVAKKHGAMVLVDEAHSMGFFGPN---GRGVYEAQGLEGQIDFVVGTFSKSVGTVG-- 270 (427)
T ss_dssp EEESEETTTTEECC---HHHHHHHHHHTTCEEEEECTTTTTTSSTT---SCCHHHHTTCTTCCSEEEEESSSTTCSCC--
T ss_pred EEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEECCccccccCCC---CCchHhhcCCCcCCcEEEecchhhhccCC--
Confidence 99999999999998 77889999999999999999999887631 112222222 2245899999999998777
Q ss_pred ceEEEEEcCCchhHHHHHHHHHHHHh-c-cccCCChHHHHHHHHHhC
Q psy14428 394 VGTFSVLTPTSDETERIMSQLKILIR-G-FYSNPPIHGARIVTEILS 438 (583)
Q Consensus 394 iG~lv~~~p~~~~~~~li~~l~~~~~-~-~~~~~s~~~q~~~~~~l~ 438 (583)
||+++ ++ ++++.+....+ . ...+.+.+.+.++...++
T Consensus 271 -G~v~~--~~-----~l~~~l~~~~~~~~~~~~~~~~~~aa~~~al~ 309 (427)
T 2w8t_A 271 -GFVVS--NH-----PKFEAVRLACRPYIFTASLPPSVVATATTSIR 309 (427)
T ss_dssp -EEEEE--CC-----TTGGGGGGTCHHHHSSCCCCHHHHHHHHHHHH
T ss_pred -CEEEe--CH-----HHHHHHHHhcccccccCCCCHHHHHHHHHHHH
Confidence 99999 63 57776665421 1 233456666655545554
|
| >1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.4e-21 Score=205.51 Aligned_cols=186 Identities=15% Similarity=0.063 Sum_probs=148.6
Q ss_pred CChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHh-CCCCCE
Q psy14428 182 VLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERF-YPGVKT 260 (583)
Q Consensus 182 ~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~-~~~gd~ 260 (583)
..+.+.+++.+.+... ...|.+..+..+||++++++++.. +.|++ ++| ++|+.++ +..+ ..+||+
T Consensus 15 ~~~~~~~a~~~~l~~~-~~~~~~~~~~~~l~~~la~~~~~~-------~~i~~--~sG-t~al~~~---l~~l~~~~gd~ 80 (388)
T 1b9h_A 15 YDDAERNGLVRALEQG-QWWRMGGDEVNSFEREFAAHHGAA-------HALAV--TNG-THALELA---LQVMGVGPGTE 80 (388)
T ss_dssp CCHHHHHHHHHHHHTS-CCBTTTCSHHHHHHHHHHHHTTCS-------EEEEE--SCH-HHHHHHH---HHHTTCCTTCE
T ss_pred CCHHHHHHHHHHHHcC-CeeecCCHHHHHHHHHHHHHhCCC-------eEEEe--CCH-HHHHHHH---HHHcCCCCcCE
Confidence 4478888888877653 356778889999999999998632 56777 887 8999985 4455 677999
Q ss_pred EEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHH
Q psy14428 261 VYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVK 340 (583)
Q Consensus 261 Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~ 340 (583)
|++++|+|..+...++..|++++.+++ +++++++|++.+++.+ .+++++++ |+||||.+.+ +++|.++|+
T Consensus 81 Vi~~~~~~~~~~~~~~~~g~~~~~v~~-~~~~~~~d~~~l~~~i---~~~~~~v~---~~n~tG~~~~---l~~i~~la~ 150 (388)
T 1b9h_A 81 VIVPAFTFISSSQAAQRLGAVTVPVDV-DAATYNLDPEAVAAAV---TPRTKVIM---PVHMAGLMAD---MDALAKISA 150 (388)
T ss_dssp EEEESSSCTHHHHHHHHTTCEEEEECB-CTTTCCBCHHHHHHHC---CTTEEEEC---CBCGGGCCCC---HHHHHHHHH
T ss_pred EEECCCccHHHHHHHHHcCCEEEEEec-CCCcCCCCHHHHHHhc---CcCceEEE---EeCCccCcCC---HHHHHHHHH
Confidence 999999999999999999999999999 6655789999998887 45677665 9999999976 567788899
Q ss_pred hcCeEEEEeccCCCC-CCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCC
Q psy14428 341 QRHLYPFFDMAYLGL-TSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPT 403 (583)
Q Consensus 341 ~~~i~iI~De~Y~~l-~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~ 403 (583)
++|++||+||+|... .+.+ .+ + ... .++.+.||||..+++|.|+||+++ ++
T Consensus 151 ~~~~~li~D~a~~~g~~~~~--~~---~----~~~-~~i~~~S~s~~K~l~g~~~G~~~~--~~ 202 (388)
T 1b9h_A 151 DTGVPLLQDAAHAHGARWQG--KR---V----GEL-DSIATFSFQNGKLMTAGEGGAVVF--PD 202 (388)
T ss_dssp HHTCCBCEECTTCTTCEETT--EE---G----GGS-SSCEEEECCTTSSSCSSSCEEEEE--CT
T ss_pred HcCCEEEEecchhcCCccCC--ee---c----ccc-cceEEEEccCCCcccCCCeEEEEE--CC
Confidence 999999999999863 3332 11 1 111 268899999888888889999999 64
|
| >2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=7.2e-22 Score=207.19 Aligned_cols=221 Identities=14% Similarity=0.076 Sum_probs=159.9
Q ss_pred CccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhH
Q psy14428 164 KKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGS 243 (583)
Q Consensus 164 ~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~a 243 (583)
+++|++.+.+. +.+++.+.+++. .|. +...+.+.+++++.+..|.. +++++++ |+|+++|
T Consensus 29 ~v~~~~~~~~~-----~~~~~~v~~a~~---------~~~---~~~~~~~~~~~~~a~~~g~~-~~~~~~~--~~ggt~a 88 (374)
T 2aeu_A 29 ALYDLSGLSGG-----FLIDEKDKALLN---------TYI---GSSYFAEKVNEYGLKHLGGD-ENDKCVG--FNRTSSA 88 (374)
T ss_dssp GCEECSSCCCC-----CCCCHHHHHHHT---------STT---HHHHHHHHHHHHHHHHHTCC-TTEEEEE--ESSHHHH
T ss_pred ceeeecccCCC-----CCCCHHHHHHHH---------Hhc---CchHHHHHHHHHHHHHhCCC-CcceEEE--EcChHHH
Confidence 57898887753 225677777764 121 11344455555553333332 4578999 9999999
Q ss_pred HHHHHHHHHHhCCCCCEEEEcCCCChhhHH---HHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEE-EEeCCC
Q psy14428 244 LRVGTAFLERFYPGVKTVYFPTPTWNGHVR---FCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSIL-FLQTSS 319 (583)
Q Consensus 244 l~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~---~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~-i~i~~p 319 (583)
+.++ +..+ +||+|++++|+|+.+.. .++..|++++.+ . |++.+++. .+++++ +++++|
T Consensus 89 ~~~~---~~~~--~gd~Vl~~~~~y~~~~~~~~~~~~~g~~~~~v-~--------d~~~l~~~----~~~~~~~v~~~~p 150 (374)
T 2aeu_A 89 ILAT---ILAL--KPKKVIHYLPELPGHPSIERSCKIVNAKYFES-D--------KVGEILNK----IDKDTLVIITGST 150 (374)
T ss_dssp HHHH---HHHH--CCSEEEEECSSSSCCTHHHHHHHHTTCEEEEE-S--------CHHHHHTT----CCTTEEEEEECBC
T ss_pred HHHH---HHhC--CCCEEEEecCCCCccHHHHHHHHHcCcEEEEe-C--------CHHHHHhc----CCCccEEEEEccC
Confidence 9986 3345 59999999998876543 667789998877 2 66666554 356788 999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEE
Q psy14428 320 HNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSV 399 (583)
Q Consensus 320 ~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~ 399 (583)
|||||. +.+++++|.++|+++|++||+||+|..+..+.. ....+. . .+..++++||||.+ +|+|+||+++
T Consensus 151 ~nptG~--~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~-~~~~~~-~----~~~di~~~S~sK~l--~g~~~G~~~~ 220 (374)
T 2aeu_A 151 MDLKVI--ELENFKKVINTAKNKEAIVFVDDASGARVRLLF-NQPPAL-K----LGADLVVTSTDKLM--EGPRGGLLAG 220 (374)
T ss_dssp TTSCBC--CHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHT-TCCCHH-H----HTCSEEEEETTSSS--SSCSCEEEEE
T ss_pred CCCCCC--CcccHHHHHHHHHHcCCEEEEECCccccccccc-ccCCcc-c----cCCcEEEecCcccc--cCcceEEEEE
Confidence 999998 889999999999999999999999987641000 010011 1 13468899999985 6899999998
Q ss_pred EcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCC
Q psy14428 400 LTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSD 439 (583)
Q Consensus 400 ~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~ 439 (583)
+ +++++++.........+++.+.|.++...+++
T Consensus 221 --~-----~~~~~~l~~~~~~~~~~~~~~~~~a~~~al~~ 253 (374)
T 2aeu_A 221 --K-----KELVDKIYIEGTKFGLEAQPPLLAGIYRALKN 253 (374)
T ss_dssp --E-----HHHHHHHHHHHHTTTCBCCHHHHHHHHHHHHH
T ss_pred --C-----HHHHHHHHHhhccccCCCCHHHHHHHHHHHHH
Confidence 6 58999998877655667889999888888764
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.8e-22 Score=211.04 Aligned_cols=289 Identities=12% Similarity=-0.004 Sum_probs=177.1
Q ss_pred CCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCch
Q psy14428 162 HPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGS 241 (583)
Q Consensus 162 ~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~ 241 (583)
+...+|++.+.+..+.|.+ .++.+.+++.+.+... ..|++..+..+++.++++.+.+..++.+ +++|++ |+|++
T Consensus 41 g~~~lD~~~~~~~~~lG~~-~~p~v~~a~~~~~~~~--~~~~~~~~~~~~~~~l~~~la~~~~~~~-~~~v~~--~~gg~ 114 (419)
T 2eo5_A 41 GNKYLDFTSGIGVNNLGWP-SHPEVIKIGIEQMQKL--AHAAANDFYNIPQLELAKKLVTYSPGNF-QKKVFF--SNSGT 114 (419)
T ss_dssp SCEEEESSGGGGTTTTCBS-CCHHHHHHHHHHHTTS--CCCSCSCSCCHHHHHHHHHHHHHSSCSS-CEEEEE--ESSHH
T ss_pred CCEEEEccCChhhhccCCC-CCHHHHHHHHHHHhhC--ccccccccCCHHHHHHHHHHHHhCCCCc-CCEEEE--eCchH
Confidence 3457899888876555532 1578888888777542 1233333333444555555544444443 789999 99999
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHh-hc-------------CCeEEEEecccCCC--CC-----------
Q psy14428 242 GSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCT-DS-------------RLNVGAYRYFDNKT--NG----------- 294 (583)
Q Consensus 242 ~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~-~~-------------G~~~~~v~~~d~~~--~g----------- 294 (583)
+++.++..++..+ . ||.|++++|+|..+..... .. +..++.+|..+... +|
T Consensus 115 ea~~~ai~~~~~~-~-~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~ 192 (419)
T 2eo5_A 115 EAIEASIKVVKNT-G-RKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSELV 192 (419)
T ss_dssp HHHHHHHHHHHTT-S-CCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCCSSSCTTCCCTTTCHHHHH
T ss_pred HHHHHHHHHHHHh-h-CCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCCccccccccccccccchhhH
Confidence 9999874433221 2 8999999999976543222 11 13567777722100 12
Q ss_pred -CChhhHH-HHHHcCC--CCcEEEEeCCCC-CCCCC-CCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHH
Q psy14428 295 -LDFAGMM-EDIKAMP--ERSILFLQTSSH-NPTGV-DLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLR 368 (583)
Q Consensus 295 -~d~~~l~-~~l~~~~--~~~~~i~i~~p~-NPTG~-~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~ 368 (583)
+|++.++ +.+.+.. ++++++ +++|+ ||||. +.+++++++|.++|+++|++||+||+|.+|.+.+. ...+.
T Consensus 193 ~~~~~~l~~~~i~~~~~~~~~~~v-i~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~~g~---~~~~~ 268 (419)
T 2eo5_A 193 NRVIEFIEDYIFVNLVPPEEVAGI-FFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGK---LFAIE 268 (419)
T ss_dssp HHHHHHHHHTHHHHTCCGGGEEEE-EECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSGGG
T ss_pred HHHHHHHHHHHHhhccCCCCEEEE-EEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCcc---hhhHH
Confidence 3577887 7775321 234444 45665 57896 77899999999999999999999999999876541 11111
Q ss_pred HHHHhcCcEEEEecCcccccccC-ccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhh
Q psy14428 369 YFAKEVGQLCLAQSFSKNMGLYG-ERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCD 447 (583)
Q Consensus 369 ~~~~~~~~vi~i~S~SK~~~l~G-lRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~ 447 (583)
. .+...+++ ||||.++ .| +|+||+++ + ++++ .+ ........+.++++|.++.++++.. ++..+
T Consensus 269 ~-~~~~~d~~---t~sK~~~-~G~~riG~~~~--~-----~~~~-~~-~~~~~~t~~~n~~~~~aa~aal~~~--~~~~~ 332 (419)
T 2eo5_A 269 N-FNTVPDVI---TLAKALG-GGIMPIGATIF--R-----KDLD-FK-PGMHSNTFGGNALACAIGSKVIDIV--KDLLP 332 (419)
T ss_dssp G-GTCCCSEE---EECGGGG-TTTSCCEEEEE--E-----GGGC-CC-------CCCCCHHHHHHHHHHHHHH--HHHHH
T ss_pred h-cCCCCCEE---Eeccccc-CCccceEEEEE--c-----hHhh-cC-CcccCCCCCCCHHHHHHHHHHHHHH--HHHHH
Confidence 1 12233433 8999999 59 99999999 6 2455 55 3233345678999999988888641 11222
Q ss_pred hHHHHHHHHHHHHhhccCCCccchhhHHHHh
Q psy14428 448 ETERIMSQLKILIRGFYSNPPIHGARIVTEI 478 (583)
Q Consensus 448 ~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~ 478 (583)
+.++..+.+.+.++..+...++.|+++++.+
T Consensus 333 ~~~~~~~~l~~~L~~~~~~~~~~g~~~~i~~ 363 (419)
T 2eo5_A 333 HVNEIGKIFAEELQGLADDVRGIGLAWGLEY 363 (419)
T ss_dssp HHHHHHHHHHHHHTTSSSEEEEETTEEEEEC
T ss_pred HHHHHHHHHHHHHHHhhhheEeeeEEEEEEE
Confidence 2333333333333333333456688777655
|
| >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.5e-21 Score=203.54 Aligned_cols=197 Identities=12% Similarity=0.020 Sum_probs=146.7
Q ss_pred CChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEE
Q psy14428 182 VLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTV 261 (583)
Q Consensus 182 ~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~V 261 (583)
+++.+.+++.+.... ...|....+..++|++++++++ +++++|++ |+|+++++.++ +..+..+||+|
T Consensus 20 ~~~~v~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~g------~~~~~v~~--t~g~t~a~~~~---~~~~~~~gd~V 86 (392)
T 2z9v_A 20 AYPEVLRGLGRTVLY--DYDPAFQLLYEKVVDKAQKAMR------LSNKPVIL--HGEPVLGLEAA---AASLISPDDVV 86 (392)
T ss_dssp CCHHHHHHTTSCCCC--TTSHHHHHHHHHHHHHHHHHTT------CSSCCEEE--SSCTHHHHHHH---HHHHCCTTCCE
T ss_pred CCHHHHHHHhccccc--cccHHHHHHHHHHHHHHHHHhC------CCCCEEEE--eCCchHHHHHH---HHHhcCCCCEE
Confidence 557777776554432 1112234467899999999875 34689999 99999999986 34446679999
Q ss_pred EEcCCCChhh--HHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHH
Q psy14428 262 YFPTPTWNGH--VRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVV 339 (583)
Q Consensus 262 lv~~P~y~~~--~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a 339 (583)
++++|+|..+ ...++..|++++.+|+ +++ +.+|++.+++.+++ .++++++++++|+||||.+++ +++|.++|
T Consensus 87 l~~~~~~~~~~~~~~~~~~g~~~~~v~~-~~~-~~~d~~~l~~~l~~-~~~~~~v~~~~~~nptG~~~~---l~~i~~l~ 160 (392)
T 2z9v_A 87 LNLASGVYGKGFGYWAKRYSPHLLEIEV-PYN-EAIDPQAVADMLKA-HPEITVVSVCHHDTPSGTINP---IDAIGALV 160 (392)
T ss_dssp EEEESSHHHHHHHHHHHHHCSCEEEEEC-CTT-SCCCHHHHHHHHHH-CTTCCEEEEESEEGGGTEECC---HHHHHHHH
T ss_pred EEecCCcccHHHHHHHHHcCCceEEeeC-CCC-CCCCHHHHHHHHhc-CCCCcEEEEeccCCCCceecc---HHHHHHHH
Confidence 9999999765 3455668999999998 543 46899999998864 246788999999999999998 56888999
Q ss_pred HhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccc-cccCccceEEEEEcCCchhHHHHHHHHHH
Q psy14428 340 KQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNM-GLYGERVGTFSVLTPTSDETERIMSQLKI 416 (583)
Q Consensus 340 ~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~-~l~GlRiG~lv~~~p~~~~~~~li~~l~~ 416 (583)
+++|++||+||+|...... ..+ ...+..+++.|+||.+ +.+|+ ||+++ + +++++++..
T Consensus 161 ~~~~~~li~D~a~~~g~~~------~~~----~~~~~d~~~~s~sK~~~~~~g~--G~l~~--~-----~~~~~~l~~ 219 (392)
T 2z9v_A 161 SAHGAYLIVDAVSSFGGMK------THP----EDCKADIYVTGPNKCLGAPPGL--TMMGV--S-----ERAWAKMKA 219 (392)
T ss_dssp HHTTCEEEEECTTTBTTBS------CCG----GGGTCSEEEECSSSTTCCCSCC--EEEEE--C-----HHHHHHHHT
T ss_pred HHcCCeEEEEcccccCCcc------ccc----ccccceEEEecCcccccCCCce--eEEEE--C-----HHHHHHhhh
Confidence 9999999999999742211 011 1224568899999965 44565 99999 6 577777764
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=5.1e-22 Score=212.64 Aligned_cols=293 Identities=12% Similarity=0.039 Sum_probs=189.6
Q ss_pred CCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCch
Q psy14428 162 HPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGS 241 (583)
Q Consensus 162 ~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~ 241 (583)
+...+|++.+.+....|. .++.+.+++.+.+.. ...|....|..++++++++++.+..+... +++|++ |+||+
T Consensus 42 g~~~lD~~~~~~~~~lG~--~~p~v~~a~~~~~~~--~~~~~~~~~~~~~~~~l~~~la~~~~~~~-~~~v~~--~~ggs 114 (439)
T 3dxv_A 42 GRELIDLSGAWGAASLGY--GHPAIVAAVSAAAAN--PAGATILSASNAPAVTLAERLLASFPGEG-THKIWF--GHSGS 114 (439)
T ss_dssp SCEEEESSTTTTTCTTCB--SCHHHHHHHHHHHHS--CSCSCSSSSEEHHHHHHHHHHHHTTTCTT-TEEEEE--ESSHH
T ss_pred CCEEEECCCchhhccCCC--CCHHHHHHHHHHHHh--ccCccccccCCHHHHHHHHHHHHhCCCCC-CCEEEE--eCCHH
Confidence 456789998888666663 457888888777654 24466667778888888888887654322 169999 99999
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhc-CCeE--------------EEEecccCCCCCC----ChhhHHH
Q psy14428 242 GSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDS-RLNV--------------GAYRYFDNKTNGL----DFAGMME 302 (583)
Q Consensus 242 ~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~-G~~~--------------~~v~~~d~~~~g~----d~~~l~~ 302 (583)
+|+..+..++..+.+ ++.|++.+|+|..+....... |... ..+|. +....+. |++.+++
T Consensus 115 ea~~~al~~~~~~~~-~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~le~ 192 (439)
T 3dxv_A 115 DANEAAYRAIVKATG-RSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPY-RPYRNDPTGDAILTLLTE 192 (439)
T ss_dssp HHHHHHHHHHHHHHS-CCEEEEETTCCCCSSHHHHCC-------------CEEEECCCCSS-SCBTTBTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCEEEEECCCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCC-CcccccccHHHHHHHHHH
Confidence 999987544333344 678999999986654444333 3221 22333 1111111 5788888
Q ss_pred HHH-cCCCCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEE
Q psy14428 303 DIK-AMPERSILFLQTSSHNPTGVDL-SEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLA 380 (583)
Q Consensus 303 ~l~-~~~~~~~~i~i~~p~NPTG~~~-s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i 380 (583)
.++ ...++++++++.+++||+|.+. +.+.+++|.++|++||++||+||+|.+|...+. ...... .+...+++
T Consensus 193 ~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~---~~~~~~-~~~~~di~-- 266 (439)
T 3dxv_A 193 KLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGR---LHCFEH-EGFVPDIL-- 266 (439)
T ss_dssp HHHTSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSS---SSGGGG-TTCCCSEE--
T ss_pred HHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCch---hhHHHh-cCCCCCEE--
Confidence 884 3345677888888888888766 455599999999999999999999998865541 111111 12223333
Q ss_pred ecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCC---hhhhhhhhhH-HHHHHHH
Q psy14428 381 QSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSD---PKLKAQCDET-ERIMSQL 456 (583)
Q Consensus 381 ~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~---~~~~~~~~~~-~~~~~~l 456 (583)
||||.++ +|+|+||+++ + +++++.+........+ .++++|.++...++. +.+.++..+. +...+.+
T Consensus 267 -s~sK~~~-~G~riG~~~~--~-----~~~~~~~~~~~~~~t~-~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~~l 336 (439)
T 3dxv_A 267 -VLGKGLG-GGLPLSAVIA--P-----AEILDCASAFAMQTLH-GNPISAAAGLAVLETIDRDDLPAMAERKGRLLRDGL 336 (439)
T ss_dssp -EECGGGG-TTSCCEEEEE--E-----HHHHTSCSSSSCCTTT-TCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred -EEcchhc-CCcceEEEEE--C-----HHHHhhhcCCCcCCCc-ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 9999999 7999999999 6 5788877765444455 888999888877752 2222222222 2233333
Q ss_pred HHHHhh--ccCCCccchhhHHHHhc
Q psy14428 457 KILIRG--FYSNPPIHGARIVTEIL 479 (583)
Q Consensus 457 ~~~~r~--~~~~~p~~g~~i~~~~l 479 (583)
..+... .....+..|.++++.+.
T Consensus 337 ~~~~~~~~~~~~~~~~g~~~~~~~~ 361 (439)
T 3dxv_A 337 SELAKRHPLIGDIRGRGLACGMELV 361 (439)
T ss_dssp HHHHHHCTTEEEEEEETTEEEEEEE
T ss_pred HHHHHhCCCeEEEEEEEEEEEEEEe
Confidence 333221 22344567888877663
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.6e-22 Score=208.73 Aligned_cols=275 Identities=12% Similarity=-0.017 Sum_probs=185.5
Q ss_pred CChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHh-------
Q psy14428 182 VLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERF------- 254 (583)
Q Consensus 182 ~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~------- 254 (583)
+++.+.+++.+.+... ...|....|..++++++.+++.+..+ +++++|++ |+|+++|+.++...+..-
T Consensus 42 ~~~~v~~a~~~~~~~~-~~~~~~~~~~~~~~~~l~~~la~~~~--~~~~~i~~--~~ggt~a~~~~~~~~~~~~~~~~~~ 116 (397)
T 3f9t_A 42 VLPITRKIVDIFLETN-LGDPGLFKGTKLLEEKAVALLGSLLN--NKDAYGHI--VSGGTEANLMALRCIKNIWREKRRK 116 (397)
T ss_dssp CCTHHHHHHHHHTTCC-TTSGGGBHHHHHHHHHHHHHHHHHTT--CTTCEEEE--ESCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHhhc-CCCcccChhHHHHHHHHHHHHHHHhC--CCCCCEEE--ecCcHHHHHHHHHHHHHHHHhhhhh
Confidence 4567888877766542 12222223556666666666665544 45789999 999999999874443221
Q ss_pred ---CCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHH
Q psy14428 255 ---YPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQ 331 (583)
Q Consensus 255 ---~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~ 331 (583)
..+||+|++++|+|..+...++..|++++.+|+ ++ ++.+|++.+++.+... +++++++++|+||||.+.+
T Consensus 117 ~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~-~~-~~~~d~~~l~~~i~~~--~~~~v~~~~~~nptG~~~~--- 189 (397)
T 3f9t_A 117 GLSKNEHPKIIVPITAHFSFEKGREMMDLEYIYAPI-KE-DYTIDEKFVKDAVEDY--DVDGIIGIAGTTELGTIDN--- 189 (397)
T ss_dssp TCCCCSSCEEEEETTCCTHHHHHHHHHTCEEEEECB-CT-TSSBCHHHHHHHHHHS--CCCEEEEEBSCTTTCCBCC---
T ss_pred cccCCCCeEEEECCcchhHHHHHHHHcCceeEEEee-CC-CCcCCHHHHHHHHhhc--CCeEEEEECCCCCCCCCCC---
Confidence 124899999999999999999999999999998 54 4678999999998532 6788889999999999987
Q ss_pred HHHHHHHHHhcCeEEEEeccCCCCCCCCCCCc------hHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCch
Q psy14428 332 WRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKD------AFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSD 405 (583)
Q Consensus 332 ~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~------~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~ 405 (583)
+++|.++|+++|++||+||+|..+..+..... ..++ . ... +..+++.|++|.++ +|.|+||+++ +++
T Consensus 190 l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~-~-~~~-~~~~~~~s~~K~~~-~~~~~g~~~~--~~~- 262 (397)
T 3f9t_A 190 IEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKF-D-FSL-GVDSITIDPHKMGH-CPIPSGGILF--KDI- 262 (397)
T ss_dssp HHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCC-S-GGG-TCSEEECCTTTTTC-CCSSCEEEEE--SSG-
T ss_pred HHHHHHHHHHhCCeEEEEccccchhhhhcccccccccccccc-c-ccc-cCCeEEEccccccC-CCCCceEEEE--eCH-
Confidence 66788999999999999999987654311000 0000 0 122 45688999999775 8889999999 653
Q ss_pred hHHHHHHHHHHHHhccc-----------cCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhh-ccC-CCccchh
Q psy14428 406 ETERIMSQLKILIRGFY-----------SNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRG-FYS-NPPIHGA 472 (583)
Q Consensus 406 ~~~~li~~l~~~~~~~~-----------~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~-~~~-~~p~~g~ 472 (583)
.+++.+........ .+.+.+.|.++...+....++++.++.++..+.+.+.++. .+. ..+..+.
T Consensus 263 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~ 339 (397)
T 3f9t_A 263 ---GYKRYLDVDAPYLTETRQATILGTRVGFGGACTYAVLRYLGREGQRKIVNECMENTLYLYKKLKENNFKPVIEPILN 339 (397)
T ss_dssp ---GGGGGTCEECTTSSSSEECSSCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCCSSS
T ss_pred ---HHHHhhccCCccccCCCccccccccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEcCCCcc
Confidence 34444332211111 1235677888888777666666666665555555444433 333 3445566
Q ss_pred hHHHHh
Q psy14428 473 RIVTEI 478 (583)
Q Consensus 473 ~i~~~~ 478 (583)
++++..
T Consensus 340 ~~~~~~ 345 (397)
T 3f9t_A 340 IVAIED 345 (397)
T ss_dssp EEEEEC
T ss_pred EEEEEe
Confidence 665443
|
| >1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.88 E-value=8.2e-22 Score=203.81 Aligned_cols=182 Identities=18% Similarity=0.079 Sum_probs=135.4
Q ss_pred CChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEE
Q psy14428 182 VLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTV 261 (583)
Q Consensus 182 ~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~V 261 (583)
+++.+.+++.+.... ...|....+..++|++++++++ +++++|++ |+|+++|+.++ +..+..+||+|
T Consensus 12 ~~~~v~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~g------~~~~~i~~--~~g~t~a~~~~---~~~~~~~gd~v 78 (352)
T 1iug_A 12 LHPKALEALARPQLH--HRTEAAREVFLKARGLLREAFR------TEGEVLIL--TGSGTLAMEAL---VKNLFAPGERV 78 (352)
T ss_dssp CCHHHHHHHHSCCCC--TTSHHHHHHHHHHHHHHHHHHT------CSSEEEEE--ESCHHHHHHHH---HHHHCCTTCEE
T ss_pred CCHHHHHHhccCCCC--ccCHHHHHHHHHHHHHHHHHhC------CCCceEEE--cCchHHHHHHH---HHhccCCCCeE
Confidence 557888887665432 1222223567899999999985 34689999 99999999986 44456679999
Q ss_pred EEcCCCChhhH--HHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHH
Q psy14428 262 YFPTPTWNGHV--RFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVV 339 (583)
Q Consensus 262 lv~~P~y~~~~--~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a 339 (583)
++++|+|+.+. ..++..|++++.+++ ++ ++.+|++.+++ ++++++++++||||||.+++ +++|.++|
T Consensus 79 l~~~~~~~~~~~~~~~~~~g~~~~~v~~-~~-~~~~d~~~l~~------~~~~~v~~~~~~nptG~~~~---l~~i~~l~ 147 (352)
T 1iug_A 79 LVPVYGKFSERFYEIALEAGLVVERLDY-PY-GDTPRPEDVAK------EGYAGLLLVHSETSTGALAD---LPALARAF 147 (352)
T ss_dssp EEEECSHHHHHHHHHHHHTTCEEEEEEC-CT-TCCCCTTTSCC------SSCSEEEEESEETTTTEECC---HHHHHHHH
T ss_pred EEEeCCchhHHHHHHHHHcCCceEEEeC-CC-CCCCCHHHHhc------cCCcEEEEEEecCCcceecC---HHHHHHHH
Confidence 99999998865 455668999999998 44 35678877644 45778999999999999998 56788899
Q ss_pred Hhc--CeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccc-cccCccceEEEE
Q psy14428 340 KQR--HLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNM-GLYGERVGTFSV 399 (583)
Q Consensus 340 ~~~--~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~-~l~GlRiG~lv~ 399 (583)
+++ |++||+||+|..-... . .+ ...+..+++.|+||.+ +.+| +||+++
T Consensus 148 ~~~~~~~~li~D~a~~~~~~~-----~-~~----~~~~~d~~~~s~~K~~~~~~g--~G~~~~ 198 (352)
T 1iug_A 148 KEKNPEGLVGADMVTSLLVGE-----V-AL----EAMGVDAAASGSQKGLMCPPG--LGFVAL 198 (352)
T ss_dssp HHHCTTCEEEEECTTTBTTBC-----C-CS----GGGTCSEEEEESSSTTCCCSC--EEEEEE
T ss_pred HhhCCCCEEEEECCccccCcc-----e-ec----cccCeeEEEecCcccccCCCc--eeEEEE
Confidence 999 9999999998632111 0 11 1124568899999954 4334 799999
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=9.8e-22 Score=207.18 Aligned_cols=288 Identities=12% Similarity=0.042 Sum_probs=182.1
Q ss_pred CCCccccCCccccCCCCCCCCChHHHHHHHHHhccCC--CCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCC
Q psy14428 162 HPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNL--DHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGIS 239 (583)
Q Consensus 162 ~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~--~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G 239 (583)
+...+|++.+.+....+. +++.+.+++.+.+.... ...| +.....++++++++++ + +.+++|++ |+|
T Consensus 44 g~~~ld~~~~~~~~~~g~--~~~~v~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~----~--~~~~~v~~--~~g 112 (395)
T 1vef_A 44 GNEYIDCVGGYGVANLGH--GNPEVVEAVKRQAETLMAMPQTL-PTPMRGEFYRTLTAIL----P--PELNRVFP--VNS 112 (395)
T ss_dssp SCEEEESSHHHHTCTTCB--TCHHHHHHHHHHHHHCCCCCTTS-CCHHHHHHHHHHHHTS----C--TTEEEEEE--ESS
T ss_pred CCEEEEccCccccccCCC--CCHHHHHHHHHHHHhCCCCcccc-CCHHHHHHHHHHHHhc----C--CCcCEEEE--cCc
Confidence 345689988876544442 45788888877775421 1123 3444566666666654 2 35789999 999
Q ss_pred chhHHHHHHHHHHHhCCCCCEEEEcCCCChh-hHHHHhhcCCeEEE---EecccCCC---CCCChhhHHHHHHcCCCCcE
Q psy14428 240 GSGSLRVGTAFLERFYPGVKTVYFPTPTWNG-HVRFCTDSRLNVGA---YRYFDNKT---NGLDFAGMMEDIKAMPERSI 312 (583)
Q Consensus 240 ~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~-~~~~~~~~G~~~~~---v~~~d~~~---~g~d~~~l~~~l~~~~~~~~ 312 (583)
+++|+.++...+..+.+ ||.|++++|+|.. +...++..|.+.+. +|+ ..+. ...|++.+++.+ .++++
T Consensus 113 g~~a~~~al~~~~~~~~-~~~vi~~~~~y~~~~~~~~~~~g~~~~~~~~~p~-~~~~~~~~~~d~~~l~~~i---~~~~~ 187 (395)
T 1vef_A 113 GTEANEAALKFARAHTG-RKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPL-VEPVEFIPYNDVEALKRAV---DEETA 187 (395)
T ss_dssp HHHHHHHHHHHHHHHHS-CCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSC-SSCEEEECTTCHHHHHHHC---CTTEE
T ss_pred HHHHHHHHHHHHHHHhC-CCeEEEEcCCcCCCchhhhhhcCCcccccccCCC-CCCeeEeCCCcHHHHHHHh---ccCEE
Confidence 99999987443322234 8899999999965 45566667775221 111 0000 013788888877 45678
Q ss_pred EEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccC
Q psy14428 313 LFLQTSSHNPTGVDL-SEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYG 391 (583)
Q Consensus 313 ~i~i~~p~NPTG~~~-s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~G 391 (583)
+++++.++||||.++ +.+++++|+++|+++|++||+||+|.+|.+.+. . .++.. .+...+++ ||||.++. |
T Consensus 188 ~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~--~-~~~~~-~~~~~d~~---s~sK~~~~-g 259 (395)
T 1vef_A 188 AVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGK--R-FAFEH-FGIVPDIL---TLAKALGG-G 259 (395)
T ss_dssp EEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--S-STHHH-HTCCCSEE---EECGGGGT-T
T ss_pred EEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCc--h-hHhhh-cCCCCCEE---EEcccccC-C
Confidence 888777789999765 789999999999999999999999998765441 1 12222 12223444 88999994 9
Q ss_pred ccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhc-cC---CC
Q psy14428 392 ERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGF-YS---NP 467 (583)
Q Consensus 392 lRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~-~~---~~ 467 (583)
+|+||+++ + +++++++.........+.+.+.|.++...++.-.-+...++.++..+.+.+.++.. .. ..
T Consensus 260 ~~~G~~~~--~-----~~~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 332 (395)
T 1vef_A 260 VPLGVAVM--R-----EEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLERTRLWERAAELGPWFMEKLRAIPSPKIREV 332 (395)
T ss_dssp SSCEEEEE--E-----HHHHHTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTSCCTTEEEE
T ss_pred CceEEEEe--h-----HHHHhhhccCCcCCCcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhcCceEEE
Confidence 99999999 6 46777665532334556788888888777653211222222333333333333322 11 23
Q ss_pred ccchhhHHHHhcC
Q psy14428 468 PIHGARIVTEILS 480 (583)
Q Consensus 468 p~~g~~i~~~~l~ 480 (583)
+..|.++|+.+..
T Consensus 333 ~~~g~~~~~~~~~ 345 (395)
T 1vef_A 333 RGMGLMVGLELKE 345 (395)
T ss_dssp EEETTEEEEEESS
T ss_pred EEEEEEEEEEEcC
Confidence 4567777776543
|
| >3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A | Back alignment and structure |
|---|
Probab=99.87 E-value=9.5e-21 Score=200.74 Aligned_cols=236 Identities=12% Similarity=-0.043 Sum_probs=162.4
Q ss_pred CCCccccCCccccCCCCCCCCChHHHHHHHHHhccC--CCCCC----CCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEE
Q psy14428 162 HPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKN--LDHEY----ANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIV 235 (583)
Q Consensus 162 ~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~--~~~~Y----~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~ 235 (583)
+...+||+...+. +.+ .++.+.+++.+.+... ....| .......+|+++++++++.. +.|++
T Consensus 58 g~~~ld~~s~~~l---~~~-~~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~-------~~i~~- 125 (409)
T 3kki_A 58 SPDDIILQSNDYL---ALA-NHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFTGFD-------ECLLS- 125 (409)
T ss_dssp CTTSEECCCSCTT---CCT-TCHHHHHHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHHTCS-------EEEEE-
T ss_pred CCceEEeeccCcc---CCc-CCHHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHHhCCC-------eEEEe-
Confidence 4567888766542 212 3477888877776541 11122 23344678999999988532 23544
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEE
Q psy14428 236 QGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFL 315 (583)
Q Consensus 236 ~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~ 315 (583)
++| ++++..+ +..+..+||.|++++|+|..+...++..|++++.++. .|++.+++.+.+ .++++++
T Consensus 126 -~sG-t~a~~~~---l~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~le~~l~~--~~~~~vi 191 (409)
T 3kki_A 126 -QSG-WNANVGL---LQTICQPNTNVYIDFFAHMSLWEGARYANAQAHPFMH-------NNCDHLRMLIQR--HGPGIIV 191 (409)
T ss_dssp -SCH-HHHHHHH---HHHHCCTTCEEEEETTSCHHHHHHHHHTTCEEEEECT-------TCHHHHHHHHHH--HCSCEEE
T ss_pred -cch-HHHHHHH---HHHhcCCCCEEEECCCcCHHHHHHHHHcCCeEEEecC-------CCHHHHHHHHHh--cCCeEEE
Confidence 555 5888764 4556778999999999999999999999999987764 278999988853 2458999
Q ss_pred eCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccce
Q psy14428 316 QTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVG 395 (583)
Q Consensus 316 i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG 395 (583)
+++||||||.+++ +++|+++|+++|++||+||+|.+..++.. .......+.-..+..|++.||||+++++ .|
T Consensus 192 ~~~~~nptG~~~~---l~~l~~la~~~~~~li~De~~~~g~~g~~--g~~~~~~~~~~~~~di~~~s~sK~~~~~---gg 263 (409)
T 3kki_A 192 VDSIYSTLGTIAP---LAELVNISKEFGCALLVDESHSLGTHGPN--GAGLLAELGLTREVHFMTASLAKTFAYR---AG 263 (409)
T ss_dssp EESBCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSGG--GCCHHHHHTCGGGCSEEEEESSSTTCSS---CE
T ss_pred ECCCCCCCCCcCC---HHHHHHHHHHcCCEEEEECCccccccCCC--CCcchhhcCCCCCCCEEEeecchhhCCC---ce
Confidence 9999999999999 77889999999999999999998665421 1112222211123458999999999966 49
Q ss_pred EEEEEcCCchhHHHHHHHHHHHHhcc--ccCCChHHHHHHHHHhC
Q psy14428 396 TFSVLTPTSDETERIMSQLKILIRGF--YSNPPIHGARIVTEILS 438 (583)
Q Consensus 396 ~lv~~~p~~~~~~~li~~l~~~~~~~--~~~~s~~~q~~~~~~l~ 438 (583)
|+++ ++ ++++.+....... ....+.+.+.++...++
T Consensus 264 ~v~~--~~-----~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~ 301 (409)
T 3kki_A 264 AIWC--NN-----EVNRCVPFISYPAIFSSTLLPYEAAGLETTLE 301 (409)
T ss_dssp EEEE--SS-----SGGGTHHHHCHHHHHSBCCCHHHHHHHHHHHH
T ss_pred EEEE--CH-----HHHHHHHHhCcCccccCCCcHHHHHHHHHHHH
Confidence 9999 63 5666666543222 22345555555555554
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-21 Score=208.03 Aligned_cols=283 Identities=12% Similarity=0.099 Sum_probs=180.6
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
.+...+|++.|.+....|. .++.+.+++.+.++.. ..++ ..+..++++++++.+.+..| .++|++ |+|+
T Consensus 55 ~g~~~lD~~~~~~~~~lG~--~~p~v~~ai~~~~~~~--~~~~-~~~~~~~~~~l~~~la~~~g----~~~v~~--~~gg 123 (420)
T 2pb2_A 55 QGKEYIDFAGGIAVTALGH--CHPALVEALKSQGETL--WHTS-NVFTNEPALRLGRKLIDATF----AERVLF--MNSG 123 (420)
T ss_dssp TCCEEEESSHHHHTCTTCB--TCHHHHHHHHHHHTTC--CCCC-TTSCCHHHHHHHHHHHHHSS----CSEEEE--ESSH
T ss_pred CCCEEEEccccccccccCC--CCHHHHHHHHHHHHhc--cccc-CccCCHHHHHHHHHHHhhCC----CCeEEE--eCCH
Confidence 3456789988876554453 4578888888777542 1111 11223455555555544333 479999 9999
Q ss_pred hhHHHHHHHHHHHhC----CCC-CEEEEcCCCChhhHH-HHhhcCCe------------EEEEecccCCCCCCChhhHHH
Q psy14428 241 SGSLRVGTAFLERFY----PGV-KTVYFPTPTWNGHVR-FCTDSRLN------------VGAYRYFDNKTNGLDFAGMME 302 (583)
Q Consensus 241 ~~al~l~~~~l~~~~----~~g-d~Vlv~~P~y~~~~~-~~~~~G~~------------~~~v~~~d~~~~g~d~~~l~~ 302 (583)
++|++++..++.... .+| +.|++++|+|..+.. .+...|.+ +..+|. .|++.+++
T Consensus 124 teA~~~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~-------~d~~~le~ 196 (420)
T 2pb2_A 124 TEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPF-------NDLHAVKA 196 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSSSCCSCEEEECT-------TCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccccccCCCCCCCeEEecC-------CCHHHHHH
Confidence 999998744332210 035 599999999977643 44445543 444443 17888888
Q ss_pred HHHcCCCCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEe
Q psy14428 303 DIKAMPERSILFLQTSSHNPTGV-DLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQ 381 (583)
Q Consensus 303 ~l~~~~~~~~~i~i~~p~NPTG~-~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~ 381 (583)
.+ .+++++++++++|||+|. +++.+.+++|.++|+++|++||+||+|.+|.+.+ ...+... .+...+++
T Consensus 197 ~i---~~~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g---~~~~~~~-~~~~~dii--- 266 (420)
T 2pb2_A 197 VM---DDHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTG---DLFAYMH-YGVTPDIL--- 266 (420)
T ss_dssp HC---CTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTS---SSSHHHH-HTCCCSEE---
T ss_pred Hh---ccCceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCC---cHHHHHh-cCCCCCeE---
Confidence 77 457888888888888784 6999999999999999999999999999887654 1222222 22234554
Q ss_pred cCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhC---ChhhhhhhhhHHHH-HHHHH
Q psy14428 382 SFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILS---DPKLKAQCDETERI-MSQLK 457 (583)
Q Consensus 382 S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~-~~~l~ 457 (583)
||||.++ +|+|+||+++ + +++++.+........++.+.++|.++...++ ++.+.++..+.+.. .+.++
T Consensus 267 t~sK~l~-~G~~iG~~~~--~-----~~l~~~l~~~~~~~t~~~~~~~~aa~~a~L~~~~~~~~~~~~~~~~~~l~~~L~ 338 (420)
T 2pb2_A 267 TSAKALG-GGFPVSAMLT--T-----QEIASAFHVGSHGSTYGGNPLACAVAGAAFDIINTPEVLQGIHTKRQQFVQHLQ 338 (420)
T ss_dssp EECGGGG-TTSCCEEEEE--C-----HHHHTTCC----CCEECCCHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHH
T ss_pred Eeccccc-CCCceEEEEE--h-----HHHHHhhcCCCcCcccCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 7899999 9999999999 6 4677766553344456788999988877664 33344433333322 22333
Q ss_pred HHHh--hccCCCccchhhHHHHhc
Q psy14428 458 ILIR--GFYSNPPIHGARIVTEIL 479 (583)
Q Consensus 458 ~~~r--~~~~~~p~~g~~i~~~~l 479 (583)
.+.. ......+..|.++++.+.
T Consensus 339 ~~~~~~~~~~~~~~~g~~~~v~~~ 362 (420)
T 2pb2_A 339 AIDEQFDIFSDIRGMGLLIGAELK 362 (420)
T ss_dssp HHHHHHCCEEEEEEETTEEEEEEC
T ss_pred HHHhcCCCeEEEEecceEEEEEEC
Confidence 3211 111223445777776553
|
| >3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.9e-21 Score=205.23 Aligned_cols=204 Identities=13% Similarity=0.045 Sum_probs=149.3
Q ss_pred CCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCC----------CCCCCCHHHHHHHHHHHhCCCCCCCCCCC
Q psy14428 162 HPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEY----------ANIGGDAKFCKLAAQLAYGEDFPAFKDNR 231 (583)
Q Consensus 162 ~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y----------~~~~G~~~Lr~aia~~~~~~~g~~~~~~~ 231 (583)
.++.+.|..+... .+++.+.+++.+.+.......+ ....+..++++.+++++. +++++
T Consensus 20 ~~~~iyld~~~~~------~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~------~~~~~ 87 (423)
T 3lvm_A 20 MKLPIYLDYSATT------PVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVG------ADPRE 87 (423)
T ss_dssp CCSSEECBTTTCC------CCCHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHT------CCGGG
T ss_pred cCCCEeecCCCcC------CCCHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcC------CCCCe
Confidence 4455555544331 2467888887766541001111 112344788888888875 35789
Q ss_pred eEEEecCCchhHHHHHHHHHHH-hCCCCCEEEEcCCCChhhHHHH---hhcCCeEEEEecccCCCCCCChhhHHHHHHcC
Q psy14428 232 LAIVQGISGSGSLRVGTAFLER-FYPGVKTVYFPTPTWNGHVRFC---TDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAM 307 (583)
Q Consensus 232 I~i~~t~G~~~al~l~~~~l~~-~~~~gd~Vlv~~P~y~~~~~~~---~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~ 307 (583)
|++ |+|+++|+.++...+.. +.++||+|++++|+|+.+...+ +..|++++.+|+ ++ ++.+|++.+++.+
T Consensus 88 v~~--~~ggt~a~~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~-~~-~~~~d~~~l~~~i--- 160 (423)
T 3lvm_A 88 IVF--TSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAP-QR-NGIIDLKELEAAM--- 160 (423)
T ss_dssp EEE--ESSHHHHHHHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECC-CT-TSCCCHHHHHHHC---
T ss_pred EEE--eCChHHHHHHHHHHHHHhhccCCCEEEECCccchHHHHHHHHHHHcCCEEEEecc-CC-CCccCHHHHHHhc---
Confidence 999 99999999986443321 2346999999999999988777 445999999998 54 4678999999887
Q ss_pred CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccc
Q psy14428 308 PERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNM 387 (583)
Q Consensus 308 ~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~ 387 (583)
.++++++++++||||||.+++ +++|+++|+++|++||+||+|......- . ....+..+++.||||.+
T Consensus 161 ~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~~~~~~------~----~~~~~~di~~~s~sK~~ 227 (423)
T 3lvm_A 161 RDDTILVSIMHVNNEIGVVQD---IAAIGEMCRARGIIYHVDATQSVGKLPI------D----LSQLKVDLMSFSGHKIY 227 (423)
T ss_dssp CTTEEEEECCSBCTTTCBBCC---HHHHHHHHHHHTCEEEEECTTTTTTSCC------C----TTTSCCSEEEEESTTTT
T ss_pred CCCcEEEEEeCCCCCCccccC---HHHHHHHHHHcCCEEEEEhhhhcCCCCc------C----hhhcCCCEEEechHHhc
Confidence 567899999999999999999 5668899999999999999987533211 1 12234568999999998
Q ss_pred cccCccceEEEE
Q psy14428 388 GLYGERVGTFSV 399 (583)
Q Consensus 388 ~l~GlRiG~lv~ 399 (583)
|.+| +||+++
T Consensus 228 g~~g--~G~~~~ 237 (423)
T 3lvm_A 228 GPKG--IGALYV 237 (423)
T ss_dssp SCSS--CEEEEE
T ss_pred CCCC--eEEEEE
Confidence 8777 899999
|
| >2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.3e-21 Score=204.08 Aligned_cols=195 Identities=7% Similarity=0.013 Sum_probs=144.8
Q ss_pred CChHHHHHHHHHhccCCCCCCCCC--CCCHHHHHHHHHHHhCCCCCCCCCC-CeEEEecCCchhHHHHHHHHHHHhCCCC
Q psy14428 182 VLPSVKEAERRIYEKNLDHEYANI--GGDAKFCKLAAQLAYGEDFPAFKDN-RLAIVQGISGSGSLRVGTAFLERFYPGV 258 (583)
Q Consensus 182 ~~~~v~~a~~~~~~~~~~~~Y~~~--~G~~~Lr~aia~~~~~~~g~~~~~~-~I~i~~t~G~~~al~l~~~~l~~~~~~g 258 (583)
+++.+.+++.+.. ..+|.+. ....+||++++++++. +++ +|++ |+|+++++.++ +..+..+|
T Consensus 29 ~~~~v~~a~~~~~----~~~~~~~~~~~~~~l~~~la~~~~~------~~~~~v~~--~~g~t~al~~~---~~~~~~~g 93 (396)
T 2ch1_A 29 CSKRVLTAMTNTV----LSNFHAELFRTMDEVKDGLRYIFQT------ENRATMCV--SGSAHAGMEAM---LSNLLEEG 93 (396)
T ss_dssp CCHHHHHHTTSCC----CCTTCHHHHHHHHHHHHHHHHHHTC------CCSCEEEE--SSCHHHHHHHH---HHHHCCTT
T ss_pred CCHHHHHHhcccc----ccCCChhHHHHHHHHHHHHHHHhCC------CCCcEEEE--CCcHHHHHHHH---HHHhcCCC
Confidence 4567777654432 2235442 2378999999999963 456 8999 99999999985 44456679
Q ss_pred CEEEEcCCCChhhH--HHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHH
Q psy14428 259 KTVYFPTPTWNGHV--RFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLA 336 (583)
Q Consensus 259 d~Vlv~~P~y~~~~--~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~ 336 (583)
|+|++++|+|..+. ..++..|++++.+++ ++ ++.+|++.+++.+... +++++++++||||||.+++ +++|+
T Consensus 94 d~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~-~~-~~~~d~~~l~~~l~~~--~~~~v~~~~~~nptG~~~~---~~~i~ 166 (396)
T 2ch1_A 94 DRVLIAVNGIWAERAVEMSERYGADVRTIEG-PP-DRPFSLETLARAIELH--QPKCLFLTHGDSSSGLLQP---LEGVG 166 (396)
T ss_dssp CEEEEEESSHHHHHHHHHHHHTTCEEEEEEC-CT-TSCCCHHHHHHHHHHH--CCSEEEEESEETTTTEECC---CTTHH
T ss_pred CeEEEEcCCcccHHHHHHHHHcCCceEEecC-CC-CCCCCHHHHHHHHHhC--CCCEEEEECCCCCCceecC---HHHHH
Confidence 99999999999985 477889999999998 54 4678999999988531 5778889999999999999 67889
Q ss_pred HHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHH
Q psy14428 337 VVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKI 416 (583)
Q Consensus 337 ~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~ 416 (583)
++|+++|++||+||+|.. +.. +. .+ +..+..+++.|++|.++ .+.++|++++ + +++++.+..
T Consensus 167 ~l~~~~~~~li~Dea~~~---g~~--~~-~~----~~~~~d~~~~s~~K~~~-~~~g~g~~~~--~-----~~~~~~~~~ 228 (396)
T 2ch1_A 167 QICHQHDCLLIVDAVASL---CGV--PF-YM----DKWEIDAVYTGAQKVLG-APPGITPISI--S-----PKALDVIRN 228 (396)
T ss_dssp HHHHHTTCEEEEECTTTB---TTB--CC-CT----TTTTCCEEECCCC-CCC-CCSSCEEEEE--C-----HHHHHHHHT
T ss_pred HHHHHcCCEEEEEccccc---cCC--cc-ch----hhcCcCEEEEcCCcccc-CCCCeEEEEE--C-----HHHHHhhhh
Confidence 999999999999999982 211 11 11 11223456689999875 4456699999 6 467777654
|
| >1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-21 Score=210.26 Aligned_cols=200 Identities=14% Similarity=0.106 Sum_probs=157.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHH----
Q psy14428 199 DHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRF---- 274 (583)
Q Consensus 199 ~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~---- 274 (583)
.+.|+ ..|.+ +++++++++.+.+|. +++++ ++||++|+.++ +. +..+||+|++++|+|..+...
T Consensus 124 ~~~Y~-~~g~~-~~~~l~~~la~~~g~----~~~i~--~~sGt~al~~~---l~-~~~~Gd~Vi~~~~~y~~~~~~~~~~ 191 (464)
T 1ibj_A 124 PYDYT-RSGNP-TRDALESLLAKLDKA----DRAFC--FTSGMAALSAV---TH-LIKNGEEIVAGDDVYGGSDRLLSQV 191 (464)
T ss_dssp SCSBT-TTCCH-HHHHHHHHHHHHHTC----SEEEE--ESSHHHHHHHH---HT-TSCTTCEEEEESSCCHHHHHHHHHT
T ss_pred Ccccc-CCCCH-HHHHHHHHHHHHhCC----CeEEE--ECCHHHHHHHH---HH-HhCCCCEEEEECCCchhHHHHHHHH
Confidence 45676 56766 788888877765553 36677 77778888764 33 567799999999999999764
Q ss_pred HhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCC
Q psy14428 275 CTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLG 354 (583)
Q Consensus 275 ~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~ 354 (583)
++..|++++.+++ + |++.+++.+ .++++++++++||||||.+++ +++|+++|+++|++||+||+|..
T Consensus 192 ~~~~G~~v~~v~~-~------d~~~l~~~i---~~~tk~v~l~~p~NptG~v~~---l~~i~~la~~~gi~livDea~~~ 258 (464)
T 1ibj_A 192 VPRSGVVVKRVNT-T------KLDEVAAAI---GPQTKLVWLESPTNPRQQISD---IRKISEMAHAQGALVLVDNSIMS 258 (464)
T ss_dssp SGGGTCEEEEECT-T------SHHHHHHHC---CSSEEEEEECSSCTTTCCCCC---HHHHHHHHHTTTCEEEEECTTTC
T ss_pred HHHcCCEEEEeCC-C------CHHHHHHHh---ccCceEEEEeCCCCCCCEeec---HHHHHHHHHHcCCEEEEECCCcc
Confidence 5667999999887 2 788888877 567899999999999999996 77889999999999999999975
Q ss_pred CCCCCCCCchHHHHHHHHhcCcEEEEecCccccccc-CccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHH
Q psy14428 355 LTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLY-GERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIV 433 (583)
Q Consensus 355 l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~-GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~ 433 (583)
..... ++ + .+..+++.|+||.++.+ |+|+||+++ ++ +++++++.........+.+.+.|+++
T Consensus 259 g~~~~------~~----~-~~~div~~S~sK~~~g~~Gl~~G~l~~--~~----~~l~~~l~~~~~~~g~~~~~~~~~a~ 321 (464)
T 1ibj_A 259 PVLSR------PL----E-LGADIVMHSATKFIAGHSDVMAGVLAV--KG----EKLAKEVYFLQNSEGSGLAPFDCWLC 321 (464)
T ss_dssp TTTCC------GG----G-TTCSEEEEETTTTTTCSSCCCCEEEEE--CS----HHHHHHHHHHHHHTTCBCCHHHHHHH
T ss_pred cccCC------hh----h-cCCEEEEECCcccccCCCCCcEEEEEE--Ch----HHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 32211 11 1 36789999999999754 999999999 64 36888888776656677889999998
Q ss_pred HHHhCCh
Q psy14428 434 TEILSDP 440 (583)
Q Consensus 434 ~~~l~~~ 440 (583)
...+++.
T Consensus 322 ~~al~~~ 328 (464)
T 1ibj_A 322 LRGIKTM 328 (464)
T ss_dssp HHHHTTH
T ss_pred HhchhhH
Confidence 8888753
|
| >2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.8e-21 Score=202.16 Aligned_cols=208 Identities=13% Similarity=0.089 Sum_probs=153.7
Q ss_pred CCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCC--CCCCCHHHHHHHHHHHhCCCCCCCCCC-CeEEEecC
Q psy14428 162 HPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYA--NIGGDAKFCKLAAQLAYGEDFPAFKDN-RLAIVQGI 238 (583)
Q Consensus 162 ~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~--~~~G~~~Lr~aia~~~~~~~g~~~~~~-~I~i~~t~ 238 (583)
.+..+++..|.. .+++.+.+++.+.... .|. +..+..++|++++++++. +++ +|++ |+
T Consensus 17 ~~~~~~~~~g~~-------~~~~~v~~a~~~~~~~----~~~~~~~~~~~~l~~~la~~~g~------~~~~~i~~--~~ 77 (393)
T 2huf_A 17 TPNKLLMGPGPS-------NAPQRVLDAMSRPILG----HLHPETLKIMDDIKEGVRYLFQT------NNIATFCL--SA 77 (393)
T ss_dssp CCCCEECSSSCC-------CCCHHHHHHTTSCCCC----TTSHHHHHHHHHHHHHHHHHHTC------CCSEEEEE--SS
T ss_pred CCCeEEecCCCC-------CCCHHHHHHHHhhhcc----CCCHHHHHHHHHHHHHHHHHhCC------CCCcEEEE--cC
Confidence 345566655532 2457777776554322 243 235678999999999852 344 8999 99
Q ss_pred CchhHHHHHHHHHHHhCCCCCEEEEcCCCChhh--HHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEe
Q psy14428 239 SGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGH--VRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQ 316 (583)
Q Consensus 239 G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~--~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i 316 (583)
|+++|+.++ +..+..+||+|++++|+|..+ ...++..|++++.+|+ ++ ++.+|++.+++.+... +++++++
T Consensus 78 g~t~a~~~~---~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~-~~-~~~~d~~~l~~~i~~~--~~~~v~~ 150 (393)
T 2huf_A 78 SGHGGMEAT---LCNLLEDGDVILIGHTGHWGDRSADMATRYGADVRVVKS-KV-GQSLSLDEIRDALLIH--KPSVLFL 150 (393)
T ss_dssp CHHHHHHHH---HHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEEC-CT-TCCCCHHHHHHHHHHH--CCSEEEE
T ss_pred cHHHHHHHH---HHHHhCCCCEEEEECCCcchHHHHHHHHHcCCeeEEEeC-CC-CCCCCHHHHHHHHhcc--CCcEEEE
Confidence 999999986 444566799999999999874 3455668999999998 54 3568999999988421 5788889
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCccc-ccccCccce
Q psy14428 317 TSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKN-MGLYGERVG 395 (583)
Q Consensus 317 ~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~-~~l~GlRiG 395 (583)
++||||||.+++ +++|+++|+++|++||+||++..... + ..+ ...+..+++.|+||. +|++|+ |
T Consensus 151 ~~~~nptG~~~~---l~~i~~~~~~~~~~li~D~a~~~~~~-----~-~~~----~~~~~d~~~~s~sK~l~g~~G~--G 215 (393)
T 2huf_A 151 TQGDSSTGVLQG---LEGVGALCHQHNCLLIVDTVASLGGA-----P-MFM----DRWEIDAMYTGSQKVLGAPPGI--T 215 (393)
T ss_dssp ESEETTTTEECC---CTTHHHHHHHTTCEEEEECTTTBTTB-----C-CCT----TTTTCSEEECCSSSTTCCCSSC--E
T ss_pred EccCCCccccCC---HHHHHHHHHHcCCEEEEEcccccCCC-----C-cch----hhcCccEEEECCCcccccCCCe--E
Confidence 999999999998 67889999999999999999753211 1 111 123467889999997 567888 9
Q ss_pred EEEEEcCCchhHHHHHHHHHHH
Q psy14428 396 TFSVLTPTSDETERIMSQLKIL 417 (583)
Q Consensus 396 ~lv~~~p~~~~~~~li~~l~~~ 417 (583)
|+++ + +++++++...
T Consensus 216 ~~~~--~-----~~~~~~~~~~ 230 (393)
T 2huf_A 216 PVSF--S-----HRAVERYKRR 230 (393)
T ss_dssp EEEE--C-----HHHHHHHHTC
T ss_pred EEEE--C-----HHHHHHHhhc
Confidence 9999 6 5788887754
|
| >3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.6e-21 Score=202.31 Aligned_cols=196 Identities=12% Similarity=0.015 Sum_probs=145.7
Q ss_pred CChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEE
Q psy14428 182 VLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTV 261 (583)
Q Consensus 182 ~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~V 261 (583)
+++.+.+++.+.... ...+.......++|++++++++. +.++++|++ |+|+++++. + + ..+..+||+|
T Consensus 13 ~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~la~~~~~----~~~~~~v~~--~~g~t~al~-~--~-~~~~~~gd~v 80 (384)
T 3zrp_A 13 IKEDVLVAGLENNVG--FTSKEFVEALAYSLKGLRYVMGA----SKNYQPLII--PGGGTSAME-S--V-TSLLKPNDKI 80 (384)
T ss_dssp CCHHHHHHTTCCSCC--TTSHHHHHHHHHHHHHHHHHHTC----CTTSEEEEE--ESCHHHHHH-H--G-GGGCCTTCEE
T ss_pred CCHHHHHHhhccccc--cccHHHHHHHHHHHHHHHHHhCC----CCCCcEEEE--cCCcHHHHH-H--H-HhhcCCCCEE
Confidence 456777765443321 11122234567788888888852 223388999 999999999 6 2 3456779999
Q ss_pred EEcCCCChh--hHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHH
Q psy14428 262 YFPTPTWNG--HVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVV 339 (583)
Q Consensus 262 lv~~P~y~~--~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a 339 (583)
++++|+|.. +...++..|++++.+|+ +. ++.+|++.+++.+.. .+++++++++||||||.+++ +++|.++|
T Consensus 81 i~~~~~~~~~~~~~~~~~~g~~~~~v~~-~~-~~~~d~~~l~~~i~~--~~~~~v~~~~~~nptG~~~~---l~~i~~l~ 153 (384)
T 3zrp_A 81 LVVSNGVFGDRWEQIFKRYPVNVKVLRP-SP-GDYVKPGEVEEEVRK--SEYKLVALTHVETSTGVREP---VKDVINKI 153 (384)
T ss_dssp EEECSSHHHHHHHHHHTTSSCEEEEECC-ST-TCCCCHHHHHHHHHH--SCEEEEEEESEETTTTEECC---HHHHHHHH
T ss_pred EEecCCcchHHHHHHHHHcCCcEEEecC-CC-CCCCCHHHHHHHHHh--CCCcEEEEeCCCCCCceECc---HHHHHHHH
Confidence 999999954 66777889999999998 54 457899999999853 25899999999999999998 66789999
Q ss_pred HhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHH
Q psy14428 340 KQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQL 414 (583)
Q Consensus 340 ~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l 414 (583)
+++|++||+|+++......- + + +..+..+++.|+||.++ .+.++||+++ + +++++++
T Consensus 154 ~~~~~~li~D~a~~~~~~~~---~---~----~~~~~d~~~~s~~K~~~-~~~g~g~~~~--~-----~~~~~~~ 210 (384)
T 3zrp_A 154 RKYVELIVVDGVSSVGAEEV---K---A----EEWNVDVYLTASQKALG-SAAGLGLLLL--S-----PKALSIL 210 (384)
T ss_dssp GGGEEEEEEECTTTTTTSCC---C---T----TTTTCSEEEEETTSTTC-CCSSEEEEEE--C-----HHHHHHH
T ss_pred HhcCCEEEEECcccccCccc---c---c----cccCCCEEEecCccccc-CCCceEEEEE--C-----HHHHHHh
Confidence 99999999999987543321 1 1 12346789999999885 3455999999 6 5677776
|
| >1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.87 E-value=2.8e-21 Score=200.57 Aligned_cols=207 Identities=14% Similarity=-0.032 Sum_probs=150.6
Q ss_pred ccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCC-C-CCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchh
Q psy14428 165 KMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYAN-I-GGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSG 242 (583)
Q Consensus 165 ~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~-~-~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~ 242 (583)
.++++.| |. . +++.+.+++.+.. .+.|+. . .+..++|++++++++ .+.++++|++ |+|+++
T Consensus 5 ~~~~~~g-p~---~---~~~~v~~a~~~~~----~~~~~~~~~~~~~~l~~~la~~~g----~~~~~~~v~~--~~g~t~ 67 (366)
T 1m32_A 5 YLLLTPG-PL---T---TSRTVKEAMLFDS----CTWDDDYNIGVVEQIRQQLTALAT----ASEGYTSVLL--QGSGSY 67 (366)
T ss_dssp CEECSSS-SC---C---CCHHHHHTTCCCC----CTTSHHHHTTTHHHHHHHHHHHHC----SSSSEEEEEE--ESCHHH
T ss_pred cccccCC-Cc---C---CCHHHHHHHhhhh----cCCCHHHHHHHHHHHHHHHHHHhC----CCCcCcEEEE--ecChHH
Confidence 5777777 32 1 4567777654422 122221 2 788999999999995 1233568999 999999
Q ss_pred HHHHHHHHHHHhCCCCCEEEEcC-CCChh-hHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCC
Q psy14428 243 SLRVGTAFLERFYPGVKTVYFPT-PTWNG-HVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSH 320 (583)
Q Consensus 243 al~l~~~~l~~~~~~gd~Vlv~~-P~y~~-~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~ 320 (583)
|+.++ +..+..+||+|++++ |+|+. +...++..|++++.+|+ ++ ++.+|++.+++.+.+. .+++++++++|+
T Consensus 68 a~~~~---~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~-~~-~~~~d~~~l~~~l~~~-~~~~~v~~~~~~ 141 (366)
T 1m32_A 68 AVEAV---LGSALGPQDKVLIVSNGAYGARMVEMAGLMGIAHHAYDC-GE-VARPDVQAIDAILNAD-PTISHIAMVHSE 141 (366)
T ss_dssp HHHHH---HHHSCCTTCCEEEEESSHHHHHHHHHHHHHTCCEEEEEC-CT-TSCCCHHHHHHHHHHC-TTCCEEEEESEE
T ss_pred HHHHH---HHHhcCCCCeEEEEeCCCccHHHHHHHHHhCCceEEEeC-CC-CCCCCHHHHHHHHhcC-CCeEEEEEeccc
Confidence 99985 455666799988776 55654 66778888999999998 44 3568999999988642 346788899999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEE
Q psy14428 321 NPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVL 400 (583)
Q Consensus 321 NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~ 400 (583)
||||.+++ +++|+++|+++|++||+||+|......- .+ ...+..+++.|+||.++ .+.++||+++
T Consensus 142 nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~~~~~~------~~----~~~~~di~~~s~~K~~~-~~~g~G~~~~- 206 (366)
T 1m32_A 142 TTTGMLNP---IDEVGALAHRYGKTYIVDAMSSFGGIPM------DI----AALHIDYLISSANKCIQ-GVPGFAFVIA- 206 (366)
T ss_dssp TTTTEECC---HHHHHHHHHHHTCEEEEECTTTTTTSCC------CT----TTTTCSEEEEESSSTTC-CCSSEEEEEE-
T ss_pred CCcceecC---HHHHHHHHHHcCCEEEEECCccccCcCc------cc----cccCccEEEecCccccc-CCCceEEEEE-
Confidence 99999999 6688999999999999999998544321 11 12245789999999874 2345699999
Q ss_pred cCCchhHHHHHHHHH
Q psy14428 401 TPTSDETERIMSQLK 415 (583)
Q Consensus 401 ~p~~~~~~~li~~l~ 415 (583)
+ +++++++.
T Consensus 207 -~-----~~~~~~~~ 215 (366)
T 1m32_A 207 -R-----EQKLAACK 215 (366)
T ss_dssp -E-----HHHHTTCT
T ss_pred -C-----HHHHHhhc
Confidence 6 45665544
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.87 E-value=7.2e-21 Score=201.08 Aligned_cols=211 Identities=11% Similarity=-0.038 Sum_probs=154.5
Q ss_pred ccccCCccccCCCCCCCCChHHHHHHHHHhccC---CCCCCC----CCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEec
Q psy14428 165 KMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKN---LDHEYA----NIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQG 237 (583)
Q Consensus 165 ~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~---~~~~Y~----~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t 237 (583)
.+.|..+... .+++.+.+++.+.+... ....|. ...+..++|++++++++ +++++|++ |
T Consensus 27 ~~~ld~~~~~------~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g------~~~~~v~~--~ 92 (406)
T 3cai_A 27 WVHFDAPAGM------LIPDSVATTVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLVN------ADPGGVVL--G 92 (406)
T ss_dssp CEECBGGGCC------CCCHHHHHHHHHHHHHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHHT------CCGGGEEE--E
T ss_pred eEEEeCCCcC------CCCHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHhC------CCCCeEEE--e
Confidence 4555555442 24577888877776531 112242 24567899999999985 35689999 9
Q ss_pred CCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhh----cCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEE
Q psy14428 238 ISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTD----SRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSIL 313 (583)
Q Consensus 238 ~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~----~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~ 313 (583)
+|+++++.++...+.....+||+|++++|+|..+...+.. .|++++.+|+ +++++.+|++.+++.+ .+++++
T Consensus 93 ~g~t~al~~~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~~-~~~~~~~d~~~l~~~l---~~~~~~ 168 (406)
T 3cai_A 93 ADRAVLLSLLAEASSSRAGLGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEV-DIETGELPTWQWESLI---SKSTRL 168 (406)
T ss_dssp SCHHHHHHHHHHHTGGGGBTTCEEEEETTSCGGGTHHHHHHHHHHBCEEEEECC-CTTTCCCCGGGHHHHC---CTTEEE
T ss_pred CChHHHHHHHHHHHhhccCCCCEEEEcCCccHHHHHHHHHHHHhcCCeEEEEec-CcccCCcCHHHHHHHh---CCCceE
Confidence 9999999985322211145699999999999987555544 6999999998 5445678999999887 567899
Q ss_pred EEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCcc
Q psy14428 314 FLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGER 393 (583)
Q Consensus 314 i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlR 393 (583)
+++++|+||||.+++ +++|.++|+++|++||+|++|..-... ..+.. .+..+++.|+||.+| |+
T Consensus 169 v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~g~~~------~~~~~----~~~d~~~~s~~K~~g-~~-- 232 (406)
T 3cai_A 169 VAVNSASGTLGGVTD---LRAMTKLVHDVGALVVVDHSAAAPYRL------LDIRE----TDADVVTVNAHAWGG-PP-- 232 (406)
T ss_dssp EEEESBCTTTCBBCC---CHHHHHHHHHTTCEEEEECTTTTTTCC------CCHHH----HCCSEEEEEGGGGTS-CS--
T ss_pred EEEeCCcCCccccCC---HHHHHHHHHHcCCEEEEEcccccCCCC------CCchh----cCCCEEEeehhhhcC-CC--
Confidence 999999999999998 567888999999999999999742211 11222 246788999999886 55
Q ss_pred ce-EEEEEcCCchhHHHHHHHHHH
Q psy14428 394 VG-TFSVLTPTSDETERIMSQLKI 416 (583)
Q Consensus 394 iG-~lv~~~p~~~~~~~li~~l~~ 416 (583)
+| |+++ + +++++++..
T Consensus 233 ~G~~~~~--~-----~~~~~~l~~ 249 (406)
T 3cai_A 233 IGAMVFR--D-----PSVMNSFGS 249 (406)
T ss_dssp CEEEEES--C-----HHHHHTSCC
T ss_pred cCeEEEE--e-----hHHHhhcCC
Confidence 99 9998 6 467666544
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=4e-21 Score=205.02 Aligned_cols=291 Identities=10% Similarity=0.047 Sum_probs=180.0
Q ss_pred CCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCC---CCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecC
Q psy14428 162 HPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLD---HEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGI 238 (583)
Q Consensus 162 ~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~---~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~ 238 (583)
+...+|++.+.+....|. .++.+.+++.+.++.... ..|+. ....++++++++++. +.+++|++ |+
T Consensus 42 g~~ylD~~~~~~~~~lg~--~~p~v~~a~~~~~~~~~~~~~~~~~~-~~~~~l~~~la~~~~------~~~~~v~~--~~ 110 (429)
T 1s0a_A 42 GRRLVDGMSSWWAAIHGY--NHPQLNAAMKSQIDAMSHVMFGGITH-APAIELCRKLVAMTP------QPLECVFL--AD 110 (429)
T ss_dssp SCEEEESSTTTTTCTTCB--SCHHHHHHHHHHHHHCSCCCCSSEEC-HHHHHHHHHHHHHSC------TTCCEEEE--ES
T ss_pred CCEEEEcCccHhhccCCC--CCHHHHHHHHHHHHhcccccccccCC-HHHHHHHHHHHHhCC------CCCCEEEE--eC
Confidence 345688888877544553 357888888777654211 13322 223567777776653 46789999 99
Q ss_pred CchhHHHHHHHHHHHhCC----CCCEEEEcCCCChhhHHHHhh-cC-------------CeEEEEecc-c--CCCC-CCC
Q psy14428 239 SGSGSLRVGTAFLERFYP----GVKTVYFPTPTWNGHVRFCTD-SR-------------LNVGAYRYF-D--NKTN-GLD 296 (583)
Q Consensus 239 G~~~al~l~~~~l~~~~~----~gd~Vlv~~P~y~~~~~~~~~-~G-------------~~~~~v~~~-d--~~~~-g~d 296 (583)
|+++|+.++..++..+.. |||.|++.+|+|..+...... .| ..+..+++. + .+.+ .+|
T Consensus 111 ggtea~~~ai~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 190 (429)
T 1s0a_A 111 SGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERD 190 (429)
T ss_dssp SHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGG
T ss_pred CHHHHHHHHHHHHHHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCcccccccchHHH
Confidence 999999987544332222 489999999999876443221 11 123444441 1 0123 478
Q ss_pred hhhHHHHHHcCCCCcEEEEeCCC--CCCCCC-CCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHh
Q psy14428 297 FAGMMEDIKAMPERSILFLQTSS--HNPTGV-DLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKE 373 (583)
Q Consensus 297 ~~~l~~~l~~~~~~~~~i~i~~p--~NPTG~-~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~ 373 (583)
++.+++.+++..+++++++ ++| |||||. +.+++++++|+++|+++|+++|+||+|.+|...+. ..++.. .+.
T Consensus 191 ~~~l~~~l~~~~~~~~~vi-~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g~---~~~~~~-~~~ 265 (429)
T 1s0a_A 191 MVGFARLMAAHRHEIAAVI-IEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGK---LFACEH-AEI 265 (429)
T ss_dssp GHHHHHHHHHHTTTEEEEE-ECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSGGGG-GTC
T ss_pred HHHHHHHHHhCCCCEEEEE-EeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccch---HHHhhh-cCC
Confidence 9999988854223455554 555 699996 66889999999999999999999999998865441 111111 122
Q ss_pred cCcEEEEecCcccccccC-ccceEEEEEcCCchhHHHHHHHHHHHH-----hccccCCChHHHHHHHHHhC---Chhhhh
Q psy14428 374 VGQLCLAQSFSKNMGLYG-ERVGTFSVLTPTSDETERIMSQLKILI-----RGFYSNPPIHGARIVTEILS---DPKLKA 444 (583)
Q Consensus 374 ~~~vi~i~S~SK~~~l~G-lRiG~lv~~~p~~~~~~~li~~l~~~~-----~~~~~~~s~~~q~~~~~~l~---~~~~~~ 444 (583)
..++ .||||.++ +| +|+||+++ + +++++.+.... .....+.+.++|.++..+++ ++.+.+
T Consensus 266 ~~d~---~t~sK~l~-~G~~~iG~~~~--~-----~~~~~~l~~~~~~~~~~~~t~~~n~~~~~a~~aal~~~~~~~~~~ 334 (429)
T 1s0a_A 266 APDI---LCLGKALT-GGTMTLSATLT--T-----REVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQ 334 (429)
T ss_dssp CCSE---EEECGGGG-TSSSCCEEEEE--C-----HHHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCE---EEeccccc-CCCccceEEEe--C-----HHHHHHhhcCCCcccccCCCCCCCHHHHHHHHHHHHHHHhCCHHH
Confidence 2333 38999998 68 99999999 6 57888887531 22345678899988877765 333333
Q ss_pred hhhhHHHHH-HHHHHHHh-hccCCCccchhhHHHHhc
Q psy14428 445 QCDETERIM-SQLKILIR-GFYSNPPIHGARIVTEIL 479 (583)
Q Consensus 445 ~~~~~~~~~-~~l~~~~r-~~~~~~p~~g~~i~~~~l 479 (583)
+..+.+..+ +.++.+.. ..+...++.|.++|+.+.
T Consensus 335 ~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~~~~~ 371 (429)
T 1s0a_A 335 QVADIEVQLREQLAPARDAEMVADVRVLGAIGVVETT 371 (429)
T ss_dssp HHHHHHHHHHHHHGGGGGCTTEEEEEEETTEEEEEES
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEEEeeEEEEEEEC
Confidence 333333222 22222100 112223445777777654
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.8e-21 Score=202.73 Aligned_cols=284 Identities=14% Similarity=0.087 Sum_probs=182.0
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
.+...+|++.+.+....|. .++.+.+++.+.++.. .+.| ..+..++++++++++.+..+ +++|++ |+||
T Consensus 34 ~g~~~lD~~~~~~~~~lG~--~~p~v~~a~~~~~~~~-~~~~--~~~~~~~~~~l~~~la~~~~----~~~v~~--~~gg 102 (395)
T 3nx3_A 34 KAKKYLDFSSGIGVCALGY--NHAKFNAKIKAQVDKL-LHTS--NLYYNENIAAAAKNLAKASA----LERVFF--TNSG 102 (395)
T ss_dssp TCCEEEESSHHHHTCTTCB--SCHHHHHHHHHHHTTC-SCCC--TTSBCHHHHHHHHHHHHHHT----CSEEEE--ESSH
T ss_pred CCCEEEECCCcHHhccCCC--CCHHHHHHHHHHHHhc-cccc--cccCCHHHHHHHHHHHHhcC----CCeEEE--eCCH
Confidence 3456789998876555553 3578888888777542 1112 22334445555555544333 579999 9999
Q ss_pred hhHHHHHHHHHHHhC----CCCCEEEEcCCCChhhHHHHhhcC-------------CeEEEEecccCCCCCCChhhHHHH
Q psy14428 241 SGSLRVGTAFLERFY----PGVKTVYFPTPTWNGHVRFCTDSR-------------LNVGAYRYFDNKTNGLDFAGMMED 303 (583)
Q Consensus 241 ~~al~l~~~~l~~~~----~~gd~Vlv~~P~y~~~~~~~~~~G-------------~~~~~v~~~d~~~~g~d~~~l~~~ 303 (583)
++|+..+..++.... .++|.|++.+|+|..+.......+ .++..+|.. |++.+++.
T Consensus 103 ~ea~~~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------d~~~l~~~ 175 (395)
T 3nx3_A 103 TESIEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKYN-------DISSVEKL 175 (395)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECTT-------CHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCCC-------CHHHHHHh
Confidence 999998754433320 347999999999977654333322 344445441 67777766
Q ss_pred HHcCCCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEec
Q psy14428 304 IKAMPERSILFLQTSSHNPTGVD-LSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQS 382 (583)
Q Consensus 304 l~~~~~~~~~i~i~~p~NPTG~~-~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S 382 (583)
+ .++++++++.+++||+|.. ++++++++|.++|++||+++|+||+|.+|...+. .... +..+....+.|
T Consensus 176 l---~~~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~---~~~~----~~~~~~~d~~t 245 (395)
T 3nx3_A 176 V---NEKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGK---FFAY----EHAQILPDIMT 245 (395)
T ss_dssp C---CTTEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSGG----GGGTCCCSEEE
T ss_pred c---cCCeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCc---chhH----HhcCCCCCEEE
Confidence 6 4567777776677777765 7899999999999999999999999998865541 1111 11223334558
Q ss_pred CcccccccCccceEEEEEcCCchhHHHH-HHHHHHHHhccccCCChHHHHHHHHHhCC---hhhhhhhhh-HHHHHHHHH
Q psy14428 383 FSKNMGLYGERVGTFSVLTPTSDETERI-MSQLKILIRGFYSNPPIHGARIVTEILSD---PKLKAQCDE-TERIMSQLK 457 (583)
Q Consensus 383 ~SK~~~l~GlRiG~lv~~~p~~~~~~~l-i~~l~~~~~~~~~~~s~~~q~~~~~~l~~---~~~~~~~~~-~~~~~~~l~ 457 (583)
|||.++ .|+|+||+++ + +++ ++.+........++.++++|.++...++. +.+.++..+ .+...+.+.
T Consensus 246 ~sK~~~-~G~~~G~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~~l~ 317 (395)
T 3nx3_A 246 SAKALG-CGLSVGAFVI--N-----QKVASNSLEAGDHGSTYGGNPLVCAGVNAVFEIFKEEKILENVNKLTPYLEQSLD 317 (395)
T ss_dssp ECGGGT-TTSCCEEEEE--C-----HHHHHHHSCTTCCSSCBSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred eccccc-CCCceEEEEE--c-----hhhhhhhcCCcccCCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 999998 5999999999 6 567 77776654455678899999988887762 222222222 222233333
Q ss_pred HHHhh--ccCCCccchhhHHHHhcC
Q psy14428 458 ILIRG--FYSNPPIHGARIVTEILS 480 (583)
Q Consensus 458 ~~~r~--~~~~~p~~g~~i~~~~l~ 480 (583)
..... .....+..|.++++.+..
T Consensus 318 ~~~~~~~~~~~~~~~g~~~~~~~~~ 342 (395)
T 3nx3_A 318 ELINEFDFCKKRKGLGFMQGLSLDK 342 (395)
T ss_dssp HHHHHCTTEEEEEEETTEEEEEECT
T ss_pred HHHHhCCCeEEEEeEEEEEEEEeCC
Confidence 33221 122345567887776654
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.9e-21 Score=206.76 Aligned_cols=296 Identities=15% Similarity=0.051 Sum_probs=190.7
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
.+...+|+..+.+....|. .++.+.+++.+.+.. ...|....+..++++++++++.+..+.. .+++|++ |+||
T Consensus 62 ~G~~ylD~~~~~~~~~lGh--~~p~v~~A~~~~~~~--~~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~~v~~--~~sG 134 (453)
T 4ffc_A 62 DGNSFIDLGAGIAVTTVGA--SHPAVAAAIADQATH--FTHTCFMVTPYEQYVQVAELLNALTPGD-HDKRTAL--FNSG 134 (453)
T ss_dssp TSCEEEESSHHHHTCTTCT--TCHHHHHHHHHHHHH--CSCCTTTTSCCHHHHHHHHHHHHHSSCS-SCEEEEE--ESSH
T ss_pred CCCEEEEcCCCcccCcCCC--CCHHHHHHHHHHHHh--ccccccCcCCCHHHHHHHHHHHHhCCCC-CCcEEEE--eCcH
Confidence 3456789988877666664 247888887776654 2345555566677777777776544321 2579999 9999
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCC--------------eEEEEecccC--CCCCCCh-hhH---
Q psy14428 241 SGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRL--------------NVGAYRYFDN--KTNGLDF-AGM--- 300 (583)
Q Consensus 241 ~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~--------------~~~~v~~~d~--~~~g~d~-~~l--- 300 (583)
++|++.+..++... .+++.|++.+|+|..+.......+. .+..+|+... +.+|.+. +.+
T Consensus 135 seA~~~alk~a~~~-~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 213 (453)
T 4ffc_A 135 AEAVENAIKVARLA-TGRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRA 213 (453)
T ss_dssp HHHHHHHHHHHHHH-HCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-cCCCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCccccchHHHHHHH
Confidence 99999874443322 2368999999999877655443322 3444554211 1134442 222
Q ss_pred HHHHHcC-CCCcEEEEeCCCCCCCCC--CCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcE
Q psy14428 301 MEDIKAM-PERSILFLQTSSHNPTGV--DLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQL 377 (583)
Q Consensus 301 ~~~l~~~-~~~~~~i~i~~p~NPTG~--~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~v 377 (583)
.+.+++. .++....++++|.||+|. +.+++.+++|.++|++||++||+||+|.+|...+. ...... .+.+
T Consensus 214 ~~~l~~~i~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~---~~a~~~----~~~~ 286 (453)
T 4ffc_A 214 ISRIETQIGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGA---WFASEH----EGIV 286 (453)
T ss_dssp HHHHHHHTCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSTHHH----HTCC
T ss_pred HHHHHHhcCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCCcccc---cchhhh----cCCC
Confidence 2233221 345677778899999984 44888899999999999999999999999866541 112222 1233
Q ss_pred EEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCC---hhhhhhhhhHH-HHH
Q psy14428 378 CLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSD---PKLKAQCDETE-RIM 453 (583)
Q Consensus 378 i~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~---~~~~~~~~~~~-~~~ 453 (583)
..+.||||.++. |+|+||+++ + +++++.+........++.++++|.++...++. +.+.++..+.. ...
T Consensus 287 pdi~t~sK~~~~-G~~~G~~~~--~-----~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~ 358 (453)
T 4ffc_A 287 PDIVTMAKGIAG-GMPLSAVTG--R-----AELMDAVYAGGLGGTYGGNPVTCAAAVAALGVMRELDLPARARAIEASVT 358 (453)
T ss_dssp CSEEEECGGGGT-TSSCEEEEE--E-----HHHHTTSCTTSSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred cchHhhhhhhcC-CcCeEEEEE--C-----HHHHhhhcccCcCCCCCcCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 345689999985 999999998 6 57888887666666788899999988888762 23333332222 223
Q ss_pred HHHHHHHhh--ccCCCccchhhHHHHhc
Q psy14428 454 SQLKILIRG--FYSNPPIHGARIVTEIL 479 (583)
Q Consensus 454 ~~l~~~~r~--~~~~~p~~g~~i~~~~l 479 (583)
+.++.+... .....+..|.++++.+.
T Consensus 359 ~~l~~~~~~~~~~~~~~~~g~~~~~~~~ 386 (453)
T 4ffc_A 359 SRLSALAEEVDIIGEVRGRGAMLAIEIV 386 (453)
T ss_dssp HHHHHHHHHCSSEEEEEEETTEEEEEEB
T ss_pred HHHHHHHhhCCCeEEEEeeceEEEEEEe
Confidence 333333222 22344566888877664
|
| >2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=4.8e-21 Score=197.80 Aligned_cols=194 Identities=15% Similarity=0.066 Sum_probs=142.9
Q ss_pred CChHHHHHHHHHhccCCCCCCC-CCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCE
Q psy14428 182 VLPSVKEAERRIYEKNLDHEYA-NIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKT 260 (583)
Q Consensus 182 ~~~~v~~a~~~~~~~~~~~~Y~-~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~ 260 (583)
+++.+.+++.+.... +.|+ ...+..++|++++++++. +.++++|++ |+|+++|+.++ +..+.+ |+
T Consensus 11 ~~~~v~~a~~~~~~~---~~~~~~~~~~~~l~~~la~~~g~----~~~~~~v~~--t~g~t~a~~~~---~~~~~~--d~ 76 (353)
T 2yrr_A 11 IPERVQKALLRPMRG---HLDPEVLRVNRAIQERLAALFDP----GEGALVAAL--AGSGSLGMEAG---LANLDR--GP 76 (353)
T ss_dssp CCHHHHGGGGSCCCC---TTCHHHHHHHHHHHHHHHHHHCC----CTTCEEEEE--SSCHHHHHHHH---HHTCSC--CC
T ss_pred CCHHHHHHHhccccc---ccCHHHHHHHHHHHHHHHHHhCC----CCCCceEEE--cCCcHHHHHHH---HHHhcC--Cc
Confidence 456777776554432 2232 235678999999999853 345788999 99999999985 444544 89
Q ss_pred EEEcCCCChhh--HHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHH
Q psy14428 261 VYFPTPTWNGH--VRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVV 338 (583)
Q Consensus 261 Vlv~~P~y~~~--~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~ 338 (583)
|++++|+|..+ ...++..|++++.+|+ ++ ++.+|++.+++.+... +++++++++||||||.+++ +++|.++
T Consensus 77 vl~~~~~~~~~~~~~~~~~~g~~~~~v~~-~~-~~~~d~~~l~~~l~~~--~~~~v~~~~~~nptG~~~~---~~~i~~l 149 (353)
T 2yrr_A 77 VLVLVNGAFSQRVAEMAALHGLDPEVLDF-PP-GEPVDPEAVARALKRR--RYRMVALVHGETSTGVLNP---AEAIGAL 149 (353)
T ss_dssp EEEEECSHHHHHHHHHHHHTTCCEEEEEC-CT-TSCCCHHHHHHHHHHS--CCSEEEEESEETTTTEECC---HHHHHHH
T ss_pred EEEEcCCCchHHHHHHHHHcCCceEEEeC-CC-CCCCCHHHHHHHHHhC--CCCEEEEEccCCCcceecC---HHHHHHH
Confidence 99999998875 4566778999999998 54 3568999999988532 5678899999999999998 5577889
Q ss_pred HHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccc-cccCccceEEEEEcCCchhHHHHHHHHH
Q psy14428 339 VKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNM-GLYGERVGTFSVLTPTSDETERIMSQLK 415 (583)
Q Consensus 339 a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~-~l~GlRiG~lv~~~p~~~~~~~li~~l~ 415 (583)
|+++|++||+||+|..... + .++..+ +..+++.|++|.+ +.+| +||+++ + +++++++.
T Consensus 150 ~~~~~~~li~D~a~~~~~~-----~-~~~~~~----~~d~~~~s~~K~~~~~~g--~G~~~~--~-----~~~~~~l~ 208 (353)
T 2yrr_A 150 AKEAGALFFLDAVTTLGML-----P-FSMRAM----GVDYAFTGSQKCLSAPPG--LAPIAA--S-----LEARKAFT 208 (353)
T ss_dssp HHHHTCEEEEECTTTTTTS-----C-CCHHHH----TCSEEECCTTSTTCCCSS--CEEEEE--C-----HHHHHHCC
T ss_pred HHHcCCeEEEEcCcccccc-----c-cccccc----CceEEEecCcccccCCCc--eEEEEE--C-----HHHHHHhc
Confidence 9999999999999953221 1 123222 3457888999965 5566 699999 6 46666553
|
| >4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-20 Score=197.70 Aligned_cols=189 Identities=12% Similarity=0.046 Sum_probs=142.6
Q ss_pred CChHHHHHHHHHhccC---CCCCCCC----CCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHH-
Q psy14428 182 VLPSVKEAERRIYEKN---LDHEYAN----IGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLER- 253 (583)
Q Consensus 182 ~~~~v~~a~~~~~~~~---~~~~Y~~----~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~- 253 (583)
+++.+.+++.+.+.+. ....|.. ..+..++|++++++++ +++++|++ |+|+++|+.++...+..
T Consensus 12 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g------~~~~~v~~--~~g~t~a~~~~~~~l~~~ 83 (382)
T 4eb5_A 12 VDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVN------GGGGTVVF--TSGATEANNLAIIGYAMR 83 (382)
T ss_dssp CCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHHT------CTTEEEEE--ESSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHhC------CCCCeEEE--cCchHHHHHHHHHHHHhh
Confidence 5688888887776531 0112432 2467889999999985 34679999 99999999986433320
Q ss_pred hCCCCCEEEEcCCCChhhHHHHh---hcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHH
Q psy14428 254 FYPGVKTVYFPTPTWNGHVRFCT---DSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSED 330 (583)
Q Consensus 254 ~~~~gd~Vlv~~P~y~~~~~~~~---~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~ 330 (583)
+..+||+|++++|+|+.+...+. ..|++++.+|+ ++ ++.+|++.+++.+ .++++++++++|+||||.+++
T Consensus 84 ~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~-~~-~~~~d~~~l~~~i---~~~~~~v~~~~~~nptG~~~~-- 156 (382)
T 4eb5_A 84 NARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPV-GK-YGEVDVSFIDQKL---RDDTILVSVQHANNEIGTIQP-- 156 (382)
T ss_dssp HGGGCCEEEEETTCCHHHHHHHHHHTTTTCEEEEECB-CT-TSCBCHHHHHHHC---CTTEEEEECCSBCTTTCBBCC--
T ss_pred ccCCCCEEEECCCcchHHHHHHHHHHhCCcEEEEecc-CC-CCccCHHHHHHHh---cCCCeEEEEeccCCCccccCC--
Confidence 11569999999999998876664 36999999998 54 4668999998887 457899999999999999998
Q ss_pred HHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEE
Q psy14428 331 QWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSV 399 (583)
Q Consensus 331 ~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~ 399 (583)
+++|+++|+++|++ |+||+|.. +. .+..+.. .+..+++.|+||.+|.+| +||+++
T Consensus 157 -l~~i~~l~~~~~~~-i~D~a~~~---g~---~~~~~~~----~~~di~~~s~sK~~g~~g--~G~~~~ 211 (382)
T 4eb5_A 157 -VEEISEVLAGKAAL-HIDATASV---GQ---IEVDVEK----IGADMLTISSNDIYGPKG--VGALWI 211 (382)
T ss_dssp -HHHHHHHHTTSSEE-EEECTTTB---TT---BCCCHHH----HTCSEEEEETGGGTCCSS--CEEEEE
T ss_pred -HHHHHHHHHHCCCE-EEEcchhc---CC---cccCccc----cCCCEEEeehHHhcCCCc--eEEEEE
Confidence 56789999999999 99999983 21 1112222 245689999999988666 799998
|
| >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=9.3e-21 Score=200.28 Aligned_cols=262 Identities=15% Similarity=0.054 Sum_probs=184.4
Q ss_pred CCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchh
Q psy14428 163 PKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSG 242 (583)
Q Consensus 163 ~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~ 242 (583)
...+||+.|.+. .++.+.+++.+.... ..|.+..+..+||++++++++.. ++++ +++|++
T Consensus 30 ~~~id~~~~~~~-------~~~~v~~a~~~~~~~---~~y~~~~~~~~l~~~la~~~~~~--------~~v~--~~~Gt~ 89 (399)
T 2oga_A 30 VPFLDLKAAYEE-------LRAETDAAIARVLDS---GRYLLGPELEGFEAEFAAYCETD--------HAVG--VNSGMD 89 (399)
T ss_dssp BCSCCHHHHHHH-------THHHHHHHHHHHHHH---TCCSSSHHHHHHHHHHHHHTTSS--------EEEE--ESCHHH
T ss_pred CcccccCcCCCC-------CCHHHHHHHHHHHhc---CCCCCchhHHHHHHHHHHHHCCC--------eEEE--ecCHHH
Confidence 356788888874 226788887777654 25777788999999999998532 4556 677789
Q ss_pred HHHHHHHHHHHh-CCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCC
Q psy14428 243 SLRVGTAFLERF-YPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHN 321 (583)
Q Consensus 243 al~l~~~~l~~~-~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~N 321 (583)
|+.++ +..+ ..+||+|++++|+|..+...++..|++++.+|+ +++++.+|++.+++.+ .+++++++ |+|
T Consensus 90 a~~~~---l~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~d~~~l~~~i---~~~~~~v~---~~n 159 (399)
T 2oga_A 90 ALQLA---LRGLGIGPGDEVIVPSHTYIASWLAVSATGATPVPVEP-HEDHPTLDPLLVEKAI---TPRTRALL---PVH 159 (399)
T ss_dssp HHHHH---HHHTTCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECB-CSSSSSBCHHHHHHHC---CTTEEEEC---CBC
T ss_pred HHHHH---HHHhCCCCcCEEEECCCccHHHHHHHHHCCCEEEEEec-CCCCCCcCHHHHHHhc---CCCCeEEE---EeC
Confidence 99885 4555 677999999999999999999999999999998 5545789999998887 45677665 578
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCC-CCCCCCchHHHHHHHHhcCcEEEEecC--cccccccCccceEEE
Q psy14428 322 PTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLT-SGDFDKDAFSLRYFAKEVGQLCLAQSF--SKNMGLYGERVGTFS 398 (583)
Q Consensus 322 PTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~-~~~~~~~~~~~~~~~~~~~~vi~i~S~--SK~~~l~GlRiG~lv 398 (583)
|||.+.+ +++|.++|++++++||+||+|..+. +++ .. +.. . ..+++.|| ||.++.+| |+||++
T Consensus 160 ~tG~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~--~~---~~~----~-~di~~~S~~~sK~~~~~G-~~g~~~ 225 (399)
T 2oga_A 160 LYGHPAD---MDALRELADRHGLHIVEDAAQAHGARYRG--RR---IGA----G-SSVAAFSFYPGKNLGCFG-DGGAVV 225 (399)
T ss_dssp GGGCCCC---HHHHHHHHHHHTCEECEECTTCTTCEETT--EE---TTC----T-TCEEEEECCTTSSSCCSS-CCEEEE
T ss_pred CcCCccC---HHHHHHHHHHcCCEEEEECcccccCccCC--ee---ccc----c-cCEEEEeCCCCccCCcCC-ceEEEE
Confidence 9999876 6777889999999999999998764 332 11 111 1 24788888 89999779 999999
Q ss_pred EEcCCchhHHHHHHHHHHHHhcc------------ccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhh--cc
Q psy14428 399 VLTPTSDETERIMSQLKILIRGF------------YSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRG--FY 464 (583)
Q Consensus 399 ~~~p~~~~~~~li~~l~~~~~~~------------~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~--~~ 464 (583)
+ ++ +++++++....... ....+.+.+.++...++. ++...++.++..+.+.+.++. .+
T Consensus 226 ~--~~----~~~~~~l~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~--~~~~~~~~~~~~~~l~~~L~~~~g~ 297 (399)
T 2oga_A 226 T--GD----PELAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAH--LDSWNGRRSALAAEYLSGLAGLPGI 297 (399)
T ss_dssp E--SC----HHHHHHHHHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHTTTCTTC
T ss_pred e--CC----HHHHHHHHHHHhcCccccccccccccCCCcCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhccCCCc
Confidence 8 65 46888777654321 124567777666666643 222333333333334444433 22
Q ss_pred C--CCccchhhHHH
Q psy14428 465 S--NPPIHGARIVT 476 (583)
Q Consensus 465 ~--~~p~~g~~i~~ 476 (583)
. ..|..+.++|.
T Consensus 298 ~~~~~~~~~~~~~~ 311 (399)
T 2oga_A 298 GLPVTAPDTDPVWH 311 (399)
T ss_dssp BCCCCCTTEECCCS
T ss_pred cccCCCCCCcceeE
Confidence 2 23555666653
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.9e-20 Score=201.75 Aligned_cols=298 Identities=12% Similarity=0.040 Sum_probs=189.5
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
.+...+|++.+.+....|. .++.+.+++.+.+.+. ...|....+..++++++++++.+..+ ...++|++ |+||
T Consensus 48 ~g~~ylD~~~~~~~~~lG~--~~p~v~~A~~~~~~~~-~~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~--~~gg 120 (459)
T 4a6r_A 48 EGNKIIDGMAGLWCVNVGY--GRKDFAEAARRQMEEL-PFYNTFFKTTHPAVVELSSLLAEVTP--AGFDRVFY--TNSG 120 (459)
T ss_dssp TCCEEEETTHHHHTCTTCB--CCHHHHHHHHHHHHHC-SCCCTTSSSCCHHHHHHHHHHHHHSC--TTCCEEEE--ESSH
T ss_pred CCCEEEECCCchhcccCCC--CCHHHHHHHHHHHHhc-cccccccccCCHHHHHHHHHHHHhCC--CCCCEEEE--eCch
Confidence 3456799998877666664 3578888877776542 23455556667788888888876543 45679999 9999
Q ss_pred hhHHHHHHHHHHHhC-----CCCCEEEEcCCCChhhHHHHhhcCC-------------eEEEEecc---cCCCCCCC---
Q psy14428 241 SGSLRVGTAFLERFY-----PGVKTVYFPTPTWNGHVRFCTDSRL-------------NVGAYRYF---DNKTNGLD--- 296 (583)
Q Consensus 241 ~~al~l~~~~l~~~~-----~~gd~Vlv~~P~y~~~~~~~~~~G~-------------~~~~v~~~---d~~~~g~d--- 296 (583)
++|++.+..++.... ++++.|++.+|+|..+.......+. .+..++.. ...++ +|
T Consensus 121 seA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~d~~~ 199 (459)
T 4a6r_A 121 SESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKD-MTPDE 199 (459)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCHHHHCTT-CCHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCCccccCCcc-cCHHH
Confidence 999998754443221 3479999999999987655544322 23333320 00111 34
Q ss_pred -----hhhHHHHHHcCCCCcEEEEeCCCCCCC-CC-CCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHH
Q psy14428 297 -----FAGMMEDIKAMPERSILFLQTSSHNPT-GV-DLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRY 369 (583)
Q Consensus 297 -----~~~l~~~l~~~~~~~~~i~i~~p~NPT-G~-~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~ 369 (583)
++.+++.+.+..+.....++++|+|++ |. +++++.+++|.++|++||+++|+||+|.+|...+. ......
T Consensus 200 ~~~~~~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~G~---~~~~~~ 276 (459)
T 4a6r_A 200 FGVVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTGE---WFGHQH 276 (459)
T ss_dssp HHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS---SSHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccc---cchHhh
Confidence 677777775433233344444555544 44 55999999999999999999999999999876551 222222
Q ss_pred HHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHH---HHHhccccCCChHHHHHHHHHhCC---hhhh
Q psy14428 370 FAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLK---ILIRGFYSNPPIHGARIVTEILSD---PKLK 443 (583)
Q Consensus 370 ~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~---~~~~~~~~~~s~~~q~~~~~~l~~---~~~~ 443 (583)
+ +.... +.+|||.++..|+|+||+++ + +++++.+. .......++.++++|.++.+.++. +.+.
T Consensus 277 ~-~~~pd---i~t~sK~l~gg~~~lg~v~~--~-----~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~ 345 (459)
T 4a6r_A 277 F-GFQPD---LFTAAKGLSSGYLPIGAVFV--G-----KRVAEGLIAGGDFNHGFTYSGHPVCAAVAHANVAALRDEGIV 345 (459)
T ss_dssp H-TCCCS---EEEECGGGGTTSSCCEEEEE--C-----HHHHHHHHHHCTTHHHHHHCSCHHHHHHHHHHHHHHHHTCHH
T ss_pred c-CCCCC---eeehhhhhcCCCCCccceee--C-----HHHHHHhhcCCCcccCCCCCCCHHHHHHHHHHHHHHhcchHH
Confidence 2 22233 33789999844499999999 6 68888887 334444668889999998888862 2332
Q ss_pred hhhh--hHHHHHHHHHHHHhh--ccCCCccchhhHHHHhcC
Q psy14428 444 AQCD--ETERIMSQLKILIRG--FYSNPPIHGARIVTEILS 480 (583)
Q Consensus 444 ~~~~--~~~~~~~~l~~~~r~--~~~~~p~~g~~i~~~~l~ 480 (583)
++.. ......+.+.+.+.. .....+..|.++++.+..
T Consensus 346 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~ 386 (459)
T 4a6r_A 346 QRVKDDIGPYMQKRWRETFSRFEHVDDVRGVGMVQAFTLVK 386 (459)
T ss_dssp HHHHHTHHHHHHHHHHHHHTTCTTEEEEEEETTEEEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEEEEec
Confidence 2222 222333333222221 123445667777766654
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=6.4e-21 Score=203.59 Aligned_cols=292 Identities=13% Similarity=0.044 Sum_probs=178.4
Q ss_pred CCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCch
Q psy14428 162 HPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGS 241 (583)
Q Consensus 162 ~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~ 241 (583)
+...+|+..+.+....|. .++.+.+++.+.+.... . + ...+..+++.++++.+.+..+ +++++|++ |+|++
T Consensus 42 g~~~lD~~~~~~~~~lG~--~~p~v~~a~~~~~~~~~-~-~-~~~~~~~~~~~l~~~la~~~~--~~~~~v~~--~~gg~ 112 (433)
T 1zod_A 42 GRAILDFTSGQMSAVLGH--CHPEIVSVIGEYAGKLD-H-L-FSEMLSRPVVDLATRLANITP--PGLDRALL--LSTGA 112 (433)
T ss_dssp CCEEEETTHHHHTCTTCB--TCHHHHHHHHHHHHHCC-C-C-CTTCCCHHHHHHHHHHHHHSC--TTCCEEEE--ESCHH
T ss_pred CCEEEEcccchhccccCC--CCHHHHHHHHHHHHhCc-c-c-ccccCCHHHHHHHHHHHHhCC--CCcCEEEE--eCchH
Confidence 345678877776544452 35788888877765421 1 1 122223444444444444333 34689999 99999
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhh--------------cCCeEEEEecccCCCCC--------CChhh
Q psy14428 242 GSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTD--------------SRLNVGAYRYFDNKTNG--------LDFAG 299 (583)
Q Consensus 242 ~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~--------------~G~~~~~v~~~d~~~~g--------~d~~~ 299 (583)
+|+..+..++... +++|.|++.+|+|..+...... .|++.+++|..-...++ +|++.
T Consensus 113 ea~~~a~~~~~~~-~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~ 191 (433)
T 1zod_A 113 ESNEAAIRMAKLV-TGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDY 191 (433)
T ss_dssp HHHHHHHHHHHHH-HTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHH
T ss_pred HHHHHHHHHHHHh-hCCCeEEEECCCcCCCChhHHhhcCCccccccCCCCCCceEecCCcccccccCCchhhhHHHHHHH
Confidence 9999874433222 2368999999999775443221 13333333320000112 35888
Q ss_pred HHHHHHcCC-CCcEEEEeCCC-CCCCCC-CCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCc
Q psy14428 300 MMEDIKAMP-ERSILFLQTSS-HNPTGV-DLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQ 376 (583)
Q Consensus 300 l~~~l~~~~-~~~~~i~i~~p-~NPTG~-~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~ 376 (583)
+++.+++.. +++++++ ++| |||||. +++++++++|+++|++||++||+||+|.+|.+.+. ...+..+ +....
T Consensus 192 le~~l~~~~~~~~~~vi-~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g~~g~---~~~~~~~-~~~~d 266 (433)
T 1zod_A 192 AFDLIDRQSSGNLAAFI-AEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGT---MFACQRD-GVTPD 266 (433)
T ss_dssp HHHHHHHHCCSCEEEEE-ECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSTHHHH-TCCCS
T ss_pred HHHHHHhcCCCCeEEEE-EccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCch---HhHHhhc-CCCCC
Confidence 888885322 3455555 456 588996 67899999999999999999999999999875541 1122221 22223
Q ss_pred EEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhc--cccCCChHHHHHHHHHhC---ChhhhhhhhhHHH
Q psy14428 377 LCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRG--FYSNPPIHGARIVTEILS---DPKLKAQCDETER 451 (583)
Q Consensus 377 vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~--~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~ 451 (583)
+.||||.++ .|+|+||+++ + +++++.+...... ...+.+.++|.++...++ ++.+.++..+.+.
T Consensus 267 ---i~s~sK~~~-~G~~ig~~~~--~-----~~~~~~~~~~~~~~~~t~~~~~~~~~a~~aal~~~~~~~~~~~~~~~~~ 335 (433)
T 1zod_A 267 ---ILTLSKTLG-AGLPLAAIVT--S-----AAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQRDGLVARANVMGD 335 (433)
T ss_dssp ---EEEECHHHH-TTSSCEEEEE--C-----HHHHHHHHHTTCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred ---EEEeccccc-CCCCeeEEEE--h-----HHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 449999999 4999999999 7 5788888763222 456778999988777764 2334444433333
Q ss_pred -HHHHHHHHHh--hccCCCccchhhHHHHhc
Q psy14428 452 -IMSQLKILIR--GFYSNPPIHGARIVTEIL 479 (583)
Q Consensus 452 -~~~~l~~~~r--~~~~~~p~~g~~i~~~~l 479 (583)
+.+.++.+.. ......+..|.++|+.+.
T Consensus 336 ~l~~~l~~l~~~~~~~~~~~~~g~~~~i~~~ 366 (433)
T 1zod_A 336 RLRRGLLDLMERFDCIGDVRGRGLLLGVEIV 366 (433)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHhCCCeEEEEEEEEEEEEEEe
Confidence 2333333321 112234556888887664
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-20 Score=201.98 Aligned_cols=283 Identities=13% Similarity=0.000 Sum_probs=175.0
Q ss_pred CCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCch
Q psy14428 162 HPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGS 241 (583)
Q Consensus 162 ~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~ 241 (583)
+...+|++.+.+....|. .++.+.+++.+.+... ..| .+..++++++++++.+..+ .+++|++ |+|++
T Consensus 56 g~~~iD~~~~~~~~~lg~--~~~~v~~a~~~~~~~~--~~~---~~~~~~~~~la~~l~~~~~---~~~~v~~--~~gg~ 123 (453)
T 2cy8_A 56 GNVYLDFFGGHGALVLGH--GHPRVNAAIAEALSHG--VQY---AASHPLEVRWAERIVAAFP---SIRKLRF--TGSGT 123 (453)
T ss_dssp CCEEEESCTTTTSCTTCB--TCHHHHHHHHHHHTTT--CSS---CSSCHHHHHHHHHHHHHCT---TCSEEEE--ESCHH
T ss_pred CCEEEECcccHhhcccCC--CCHHHHHHHHHHHHhC--CCC---CCCCHHHHHHHHHHHhhCC---CCCEEEE--eCCHH
Confidence 345689998887655553 4578888888877542 123 2467899999999987653 5789999 99999
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhh-----------cCCe------EEEEecccCCCCCCChhhHHHHH
Q psy14428 242 GSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTD-----------SRLN------VGAYRYFDNKTNGLDFAGMMEDI 304 (583)
Q Consensus 242 ~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~-----------~G~~------~~~v~~~d~~~~g~d~~~l~~~l 304 (583)
+|+.++..+.+.+.+ ++.|++.+|+|..+...+.. .|+. ++.++. .|++.+++.+
T Consensus 124 eA~~~al~~ar~~~~-~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-------~d~~~le~~l 195 (453)
T 2cy8_A 124 ETTLLALRVARAFTG-RRMILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIRP-------DDIEGMREVF 195 (453)
T ss_dssp HHHHHHHHHHHHHHC-CCEEEEECC----------------------------CGGGEEEECT-------TCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhC-CCEEEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccccCceeecCC-------CCHHHHHHHH
Confidence 999987544333555 57888999999876543221 1321 233332 2788998888
Q ss_pred HcCCCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecC
Q psy14428 305 KAMPERSILFLQTSSHNPTGVD-LSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSF 383 (583)
Q Consensus 305 ~~~~~~~~~i~i~~p~NPTG~~-~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~ 383 (583)
++..++++++++...+||||.+ .+++++++|.++|++||++||+||+|.+| ..+ .......+ +.... +.||
T Consensus 196 ~~~~~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g---~~~~~~~~-~~~~d---i~s~ 267 (453)
T 2cy8_A 196 ANHGSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGF-RVG---NHGMQALL-DVQPD---LTCL 267 (453)
T ss_dssp HHHGGGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTTTT-TTC---TTHHHHHH-TCCCS---EEEE
T ss_pred HhcCCCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCcccc-ccC---chhhhHHh-CCCCc---EEEE
Confidence 5422345555544445779975 57999999999999999999999999988 433 12222221 22223 3499
Q ss_pred cccccccCccceEEEEEcCCchhHHHHHHHHHH---H--HhccccCCChHHHHHHHHHhCC---hhhhhhhhhHHH-HHH
Q psy14428 384 SKNMGLYGERVGTFSVLTPTSDETERIMSQLKI---L--IRGFYSNPPIHGARIVTEILSD---PKLKAQCDETER-IMS 454 (583)
Q Consensus 384 SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~---~--~~~~~~~~s~~~q~~~~~~l~~---~~~~~~~~~~~~-~~~ 454 (583)
||.++ +|+|+||+++ + +++++.+.. . .....++.++++|.++...++. +.+.++..+... +.+
T Consensus 268 sK~l~-~G~~~G~v~~--~-----~~~~~~l~~~~~~~~~~~~t~~~n~~~~aa~~aal~~~~~~~~~~~~~~~~~~l~~ 339 (453)
T 2cy8_A 268 AKASA-GGLPGGILGG--R-----EDVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAIDTILEDDVCAKINDLGQFARE 339 (453)
T ss_dssp EGGGG-TTSSCEEEEE--C-----HHHHTTSSSCC---------CCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred Chhhh-CCcceEEEec--h-----HHHHHHhccccCCCceeCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 99999 6999999999 7 577777654 1 1223456788888887776654 333333333332 223
Q ss_pred HHHHHHhh-cc-CCCccchhhHHHHhcC
Q psy14428 455 QLKILIRG-FY-SNPPIHGARIVTEILS 480 (583)
Q Consensus 455 ~l~~~~r~-~~-~~~p~~g~~i~~~~l~ 480 (583)
.++.+... .+ ...+..|.++|+.+..
T Consensus 340 ~L~~~~~~~~~~~~~~~~g~~~~i~~~~ 367 (453)
T 2cy8_A 340 AMNHLFARKGLNWLAYGRFSGFHLMPGL 367 (453)
T ss_dssp HHHHHHHHTTCCEEEECCTTEEEEEETS
T ss_pred HHHHHHhhCCCcEEEEEeeeEEEEEEec
Confidence 33333211 12 2245677888876653
|
| >3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-20 Score=201.03 Aligned_cols=202 Identities=15% Similarity=0.068 Sum_probs=133.9
Q ss_pred CccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCC---------CCCHHHHHHHHHHHhCCCCCCCCCCCeEE
Q psy14428 164 KKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANI---------GGDAKFCKLAAQLAYGEDFPAFKDNRLAI 234 (583)
Q Consensus 164 ~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~---------~G~~~Lr~aia~~~~~~~g~~~~~~~I~i 234 (583)
+.+.|..+... .+++.+.+++.+.... ...|+.. ....++|++++++++ +++++|++
T Consensus 18 ~~~~Ld~~~~~------~~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g------~~~~~v~~ 83 (432)
T 3a9z_A 18 RKVYMDYNATT------PLEPEVIQAVTEAMKE--AWGNPSSSYVAGRKAKDIINTARASLAKMIG------GKPQDIIF 83 (432)
T ss_dssp CCEECBTTTCC------CCCHHHHHHHHHHHHH--CCSCTTCSSHHHHHHHHHHHHHHHHHHHHHT------CCGGGEEE
T ss_pred CcEEeeCCccC------CCCHHHHHHHHHHHHH--hcCCCccCcHHHHHHHHHHHHHHHHHHHHcC------CCcCeEEE
Confidence 44556555442 2567888888776643 2233321 123699999999985 35789999
Q ss_pred EecCCchhHHHHHHHHHHH-hC----CCCCEEEEcCCCChhh-----------------HHHHhhcCCeEEEEecccCCC
Q psy14428 235 VQGISGSGSLRVGTAFLER-FY----PGVKTVYFPTPTWNGH-----------------VRFCTDSRLNVGAYRYFDNKT 292 (583)
Q Consensus 235 ~~t~G~~~al~l~~~~l~~-~~----~~gd~Vlv~~P~y~~~-----------------~~~~~~~G~~~~~v~~~d~~~ 292 (583)
|+|+++++.++...+.. +. .+||+|++++|+|..+ ....+..|++++.+|+ ++++
T Consensus 84 --~~g~t~a~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~-~~~~ 160 (432)
T 3a9z_A 84 --TSGGTESNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPV-SKVN 160 (432)
T ss_dssp --ESCHHHHHHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECC-CTTT
T ss_pred --eCChHHHHHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEec-Cccc
Confidence 99999999986433310 11 3599999999999875 3444557999999998 5434
Q ss_pred CCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcC----------eEEEEeccCCCCCCCCCCC
Q psy14428 293 NGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRH----------LYPFFDMAYLGLTSGDFDK 362 (583)
Q Consensus 293 ~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~----------i~iI~De~Y~~l~~~~~~~ 362 (583)
+.+|++.+++.+ .++++++++++||||||.+++.+ +|.++|++++ ++||+||+|......
T Consensus 161 ~~~d~~~l~~~i---~~~~~~v~~~~~~nptG~~~~~~---~i~~l~~~~~~~~~~~~~~~~~livDea~~~~~~~---- 230 (432)
T 3a9z_A 161 GQVEVEDILAAV---RPTTCLVTIMLANNETGVIMPIS---EISRRIKALNQIRAASGLPRVLVHTDAAQALGKRR---- 230 (432)
T ss_dssp SSCCHHHHHHTC---CTTEEEEECCSBCTTTCBBCCHH---HHHHHHHHHHHHHHHHTCCCCEEEEECTTTTTTSC----
T ss_pred CCcCHHHHHHhc---cCCceEEEEECcccCcccccCHH---HHHHHHHhcCcccccccCCceEEEEEchhhhCCcc----
Confidence 568999998876 56789999999999999999965 5678888988 999999999765321
Q ss_pred chHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCC
Q psy14428 363 DAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPT 403 (583)
Q Consensus 363 ~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~ 403 (583)
..+..+ ... +++.|+||.+| .|+||+++ ++
T Consensus 231 --~~~~~~---~~d-~~~~s~~K~~g---~~~G~~~~--~~ 260 (432)
T 3a9z_A 231 --VDVEDL---GVD-FLTIVGHKFYG---PRIGALYV--RG 260 (432)
T ss_dssp --CCHHHH---CCS-EEEEEGGGTTC---CSCEEEEE--TT
T ss_pred --cChhhc---CCC-EEEEehhHhcC---CcceEEEE--cc
Confidence 122221 233 45899999764 67999999 64
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.1e-20 Score=200.11 Aligned_cols=298 Identities=13% Similarity=0.063 Sum_probs=190.6
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
.+...+|++.|.+....|. .++.+.+++.+.+.+. ...|....+..++++++++++.+.. ....++|++ |+||
T Consensus 49 ~G~~~lD~~~~~~~~~lG~--~~p~v~~A~~~~~~~~-~~~~~~~~~~~~~~~~la~~l~~~~--~~~~~~v~~--~~gG 121 (460)
T 3gju_A 49 NGRKSIDAFAGLYCVNVGY--GRQKIADAIATQAKNL-AYYHAYVGHGTEASITLAKMIIDRA--PKGMSRVYF--GLSG 121 (460)
T ss_dssp TCCEEEETTHHHHTCTTCB--CCHHHHHHHHHHHHHH-SCCCCCTTCCCHHHHHHHHHHHHHS--CTTEEEEEE--ESSH
T ss_pred CCCEEEECCcchhhccCCC--CCHHHHHHHHHHHHhc-cccccccccCCHHHHHHHHHHHhhC--CCCcCEEEE--eCch
Confidence 4556799998876555664 3477888877666542 2345555666677888888776543 245679999 9999
Q ss_pred hhHHHHHHHHHHHhC-----CCCCEEEEcCCCChhhHHHHhhcCC-------------eEEEEecc---cCCCCCCC---
Q psy14428 241 SGSLRVGTAFLERFY-----PGVKTVYFPTPTWNGHVRFCTDSRL-------------NVGAYRYF---DNKTNGLD--- 296 (583)
Q Consensus 241 ~~al~l~~~~l~~~~-----~~gd~Vlv~~P~y~~~~~~~~~~G~-------------~~~~v~~~---d~~~~g~d--- 296 (583)
++|++.+..++.... ++++.|++.+|+|..+.......+. .+..++.. ..++.+.+
T Consensus 122 seA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~ 201 (460)
T 3gju_A 122 SDANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQ 201 (460)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCccccCCccccChhH
Confidence 999999754443221 4479999999999877654443321 23444431 11222444
Q ss_pred -----hhhHHHHHHcCC-CCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHH
Q psy14428 297 -----FAGMMEDIKAMP-ERSILFLQTSSHNPTGV-DLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRY 369 (583)
Q Consensus 297 -----~~~l~~~l~~~~-~~~~~i~i~~p~NPTG~-~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~ 369 (583)
++.+++.+.+.. ++++++++..++|++|. +++++.+++|.++|++||+++|+||+|.+|...+. ......
T Consensus 202 ~~~~~~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~---~~~~~~ 278 (460)
T 3gju_A 202 FSQHCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLGT---MFGSDH 278 (460)
T ss_dssp HHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS---SCHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccc---cchHhh
Confidence 477777775322 45566666666777776 78899999999999999999999999999866541 222222
Q ss_pred HHHhcCcEEEEecCcccccccC-ccceEEEEEcCCchhHHHHHHHHHHH-------HhccccCCChHHHHHHHHHhCChh
Q psy14428 370 FAKEVGQLCLAQSFSKNMGLYG-ERVGTFSVLTPTSDETERIMSQLKIL-------IRGFYSNPPIHGARIVTEILSDPK 441 (583)
Q Consensus 370 ~~~~~~~vi~i~S~SK~~~l~G-lRiG~lv~~~p~~~~~~~li~~l~~~-------~~~~~~~~s~~~q~~~~~~l~~~~ 441 (583)
+ +.... +.+|||.++ .| +|+||+++ + +++++.+... .....++.++++|.++.+.++.-.
T Consensus 279 ~-~~~pd---i~t~sK~l~-gG~~~lg~v~~--~-----~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~ 346 (460)
T 3gju_A 279 Y-GIKPD---LITIAKGLT-SAYAPLSGVIV--A-----DRVWQVLVQGSDKLGSLGHGWTYSAHPICVAAGVANLELID 346 (460)
T ss_dssp H-TCCCS---EEEECGGGT-TTSSCCEEEEE--E-----HHHHHHHHHHHHHHCSCSCCCTTTTCHHHHHHHHHHHHHHH
T ss_pred c-CCCCC---eeeeehhhc-CCCCCeEEEEE--C-----HHHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHH
Confidence 2 22223 447899997 56 89999999 6 5888888642 334466789999999888886211
Q ss_pred hhhhhhhHHHHHHHHH----HHHhh--ccCCCccchhhHHHHhcC
Q psy14428 442 LKAQCDETERIMSQLK----ILIRG--FYSNPPIHGARIVTEILS 480 (583)
Q Consensus 442 ~~~~~~~~~~~~~~l~----~~~r~--~~~~~p~~g~~i~~~~l~ 480 (583)
-+..+++.++..+.++ ..+.. .....+..|.++++.+..
T Consensus 347 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~ 391 (460)
T 3gju_A 347 EMDLVTNAGETGAYFRAELAKAVGGHKNVGEVRGDGMLAAVEFVA 391 (460)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEETTEEEEEECS
T ss_pred hccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeeeEEEEEEEcc
Confidence 1222233333333332 33221 122345567777776654
|
| >2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.85 E-value=2.8e-20 Score=194.66 Aligned_cols=197 Identities=14% Similarity=0.039 Sum_probs=143.0
Q ss_pred CChHHHHHHHHHhccCCCCCCCCC--CCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhC---C
Q psy14428 182 VLPSVKEAERRIYEKNLDHEYANI--GGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFY---P 256 (583)
Q Consensus 182 ~~~~v~~a~~~~~~~~~~~~Y~~~--~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~---~ 256 (583)
+++.+.+++.+... ..|.+. ....++|+++++++.... .+++++|++ |+|+++++.++ +..+. .
T Consensus 16 ~~~~v~~a~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~v~~--~~g~t~al~~~---~~~~~~~~~ 84 (385)
T 2bkw_A 16 LSGAVQKALDVPSL----GHTSPEFVSIFQRVLKNTRAVFKSAA--ASKSQPFVL--AGSGTLGWDIF---ASNFILSKA 84 (385)
T ss_dssp CCHHHHHTTSCCCC----CTTSHHHHHHHHHHHHHHHHHTTCCG--GGTCEEEEE--ESCTTHHHHHH---HHHHSCTTC
T ss_pred chHHHHHHHhcccc----ccCCHHHHHHHHHHHHHHHHHhCCCC--CCCCceEEE--cCchHHHHHHH---HHHHhccCC
Confidence 45666666543221 123222 246788999999997643 356789999 99999999985 34454 6
Q ss_pred CCCEEEEc-CCCChhhH-HHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHH
Q psy14428 257 GVKTVYFP-TPTWNGHV-RFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQ 334 (583)
Q Consensus 257 ~gd~Vlv~-~P~y~~~~-~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~ 334 (583)
+||+|+++ .|+|..+. ..++..|++++.+++. ++++.+|++.+++.+.. .+++++++++|+||||.+++ +++
T Consensus 85 ~gd~vlv~~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~~~d~~~l~~~l~~--~~~~~v~~~~~~nptG~~~~---l~~ 158 (385)
T 2bkw_A 85 PNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPL-KIGESVPLELITEKLSQ--NSYGAVTVTHVDTSTAVLSD---LKA 158 (385)
T ss_dssp SCCEEEEECSSHHHHHHHHHHHHTTCEEEEECCS-STTSCCCHHHHHHHHHH--SCCSEEEEESEETTTTEECC---HHH
T ss_pred CCCeEEEEcCCcchHHHHHHHHHcCCceEEEecC-CCCCCCCHHHHHHHHhc--CCCCEEEEEccCCCcCeEcC---HHH
Confidence 79999887 56777663 6778889999999872 23466899999998853 25778899999999999998 557
Q ss_pred HHHHHHhc--CeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccc-cccCccceEEEEEcCCchhHHHHH
Q psy14428 335 LAVVVKQR--HLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNM-GLYGERVGTFSVLTPTSDETERIM 411 (583)
Q Consensus 335 l~~~a~~~--~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~-~l~GlRiG~lv~~~p~~~~~~~li 411 (583)
|+++|+++ |++||+||+|...... . .+ ...+..+++.|+||.+ |.+|+ ||+++ + ++++
T Consensus 159 i~~~~~~~~~~~~li~D~a~~~~~~~-----~-~~----~~~~~d~~~~s~~K~~~~~~G~--G~~~~--~-----~~~~ 219 (385)
T 2bkw_A 159 ISQAIKQTSPETFFVVDAVCSIGCEE-----F-EF----DEWGVDFALTASQKAIGAPAGL--SISLC--S-----SRFM 219 (385)
T ss_dssp HHHHHHHHCTTSEEEEECTTTTTTSC-----C-CT----TTTTCSEEEEESSSTTCCCSCE--EEEEE--C-----HHHH
T ss_pred HHHHHHhhCCCCEEEEECccccCCcc-----c-cc----cccCceEEEecCccccccCCcc--eEEEE--c-----HHHH
Confidence 88999999 9999999999743211 0 11 1224568899999966 46775 99999 6 4565
Q ss_pred H-HH
Q psy14428 412 S-QL 414 (583)
Q Consensus 412 ~-~l 414 (583)
+ ++
T Consensus 220 ~~~l 223 (385)
T 2bkw_A 220 DYAL 223 (385)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 5 44
|
| >2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.2e-20 Score=198.99 Aligned_cols=205 Identities=17% Similarity=0.082 Sum_probs=160.5
Q ss_pred ccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCC-CCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHH
Q psy14428 167 NLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYAN-IGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLR 245 (583)
Q Consensus 167 ~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~-~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~ 245 (583)
+|+.++++.. +++.+.+++.+.+... .|++ ..|..+||++++++++. ++|++ |+|+++++.
T Consensus 20 ~l~~~~p~~~-----~p~~~~~a~~~~~~~~---~y~~~~~~~~~l~~~la~~~~~--------~~v~~--~~ggt~al~ 81 (424)
T 2po3_A 20 PLLVGRPNRI-----DRARLYERLDRALDSQ---WLSNGGPLVREFEERVAGLAGV--------RHAVA--TCNATAGLQ 81 (424)
T ss_dssp CEETTCCCCC-----CHHHHHHHHHHHHHHT---CCSSSCHHHHHHHHHHHHHHTS--------SEEEE--ESCHHHHHH
T ss_pred cccccCCCCC-----ChHHHHHHHHHHHhcC---CcccCCHHHHHHHHHHHHHhCC--------CeEEE--eCCHHHHHH
Confidence 5777777522 3467888877776542 4877 78999999999999963 48999 999999999
Q ss_pred HHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCC
Q psy14428 246 VGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGV 325 (583)
Q Consensus 246 l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~ 325 (583)
++. ..+. +||+|++++|+|..+...++..|++++.+++ +++++.+|++.+++.+ .+++++++++ ||||.
T Consensus 82 ~~l---~~l~-~gd~Vlv~~~~~~~~~~~~~~~G~~~~~v~~-~~~~~~~d~~~l~~~i---~~~~~~v~~~---~~tG~ 150 (424)
T 2po3_A 82 LLA---HAAG-LTGEVIMPSMTFAATPHALRWIGLTPVFADI-DPDTGNLDPDQVAAAV---TPRTSAVVGV---HLWGR 150 (424)
T ss_dssp HHH---HHHT-CCSEEEEESSSCTHHHHHHHHTTCEEEEECB-CTTTSSBCHHHHGGGC---CTTEEEEEEE---CGGGC
T ss_pred HHH---HHcC-CCCEEEECCCccHHHHHHHHHcCCEEEEEec-CCCcCCcCHHHHHHhh---CcCCcEEEEE---CCCCC
Confidence 863 3444 4899999999999999999999999999999 5555778999888776 4567888775 48998
Q ss_pred CCCHHHHHHHHHHHHhcCeEEEEeccCC-CCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCc
Q psy14428 326 DLSEDQWRQLAVVVKQRHLYPFFDMAYL-GLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTS 404 (583)
Q Consensus 326 ~~s~~~~~~l~~~a~~~~i~iI~De~Y~-~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~ 404 (583)
.. ++++|+++|++++++||+||+|. ++.+++ . ++.. ... +++.||||..+++|+|+||+++ ++
T Consensus 151 ~~---~l~~i~~la~~~~~~li~Dea~~~g~~~~~--~---~~~~----~~d-i~~~S~sk~K~l~~~~~G~~v~--~~- 214 (424)
T 2po3_A 151 PC---AADQLRKVADEHGLRLYFDAAHALGCAVDG--R---PAGS----LGD-AEVFSFHATKAVNAFEGGAVVT--DD- 214 (424)
T ss_dssp CC---CHHHHHHHHHHTTCEEEEECTTCTTCEETT--E---ETTS----SSS-EEEEECCTTSSSCCSSCEEEEE--SC-
T ss_pred cC---CHHHHHHHHHHcCCEEEEECccccCCeECC--e---eccc----ccC-EEEEeCCCCCCccCCCCeEEEe--CC-
Confidence 64 67788899999999999999999 576654 1 1111 123 8999999777778899999999 64
Q ss_pred hhHHHHHHHHHHHHh
Q psy14428 405 DETERIMSQLKILIR 419 (583)
Q Consensus 405 ~~~~~li~~l~~~~~ 419 (583)
+++++++.....
T Consensus 215 ---~~l~~~l~~~~~ 226 (424)
T 2po3_A 215 ---ADLAARIRALHN 226 (424)
T ss_dssp ---HHHHHHHHHHHB
T ss_pred ---HHHHHHHHHHHh
Confidence 368888877654
|
| >1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=4.5e-21 Score=198.54 Aligned_cols=279 Identities=11% Similarity=0.036 Sum_probs=181.8
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
.++..|+|+.+.+. .+++.+.+++.+.... ....|++.....++++.++++++ .+++|++ |+|+
T Consensus 5 ~~~~~id~~~~~~~------~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~l~~~la~~~g-------~~~~v~~--~~~g 68 (356)
T 1v72_A 5 SRPPALGFSSDNIA------GASPEVAQALVKHSSG-QAGPYGTDELTAQVKRKFCEIFE-------RDVEVFL--VPTG 68 (356)
T ss_dssp -CCCCCBCSCGGGC------CCCHHHHHHHHHTTSS-CCCSTTCSHHHHHHHHHHHHHHT-------SCCEEEE--ESCH
T ss_pred CCCceEeeccCCcc------CCCHHHHHHHHhhccC-cccccccchHHHHHHHHHHHHhC-------CCCcEEE--eCCc
Confidence 35678899887542 1457888888776422 13456555556677777777763 1356899 9999
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHH--Hhhc--CCeEEEEecccCCCCCCChhhHHH-HHHcC----CCCc
Q psy14428 241 SGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRF--CTDS--RLNVGAYRYFDNKTNGLDFAGMME-DIKAM----PERS 311 (583)
Q Consensus 241 ~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~--~~~~--G~~~~~v~~~d~~~~g~d~~~l~~-~l~~~----~~~~ 311 (583)
++|+.++ +..+..+||.|++++|+|..+... +... |++++.+|. + ++++|++.+++ .+... ..++
T Consensus 69 t~a~~~a---l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~-~--~~~~d~~~l~~~~i~~~~~~~~~~~ 142 (356)
T 1v72_A 69 TAANALC---LSAMTPPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDG-P--AAKLDIVRLRERTREKVGDVHTTQP 142 (356)
T ss_dssp HHHHHHH---HHTSCCTTEEEEECTTSHHHHSSTTHHHHHTTSCEEEECCC-G--GGCCCHHHHHHHTTSSTTCTTSCEE
T ss_pred cHHHHHH---HHHhcCCCCEEEEcCccchhhhhchHHHHHhCCcEEEEecC-C--CCeEcHHHHHHHhhhcchhhccCCc
Confidence 9999885 455667799999999998776555 6666 999999987 4 26889999988 77431 1257
Q ss_pred EEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCC--CCCCCchHHHHHHHHhcCcEEEEecCcccccc
Q psy14428 312 ILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTS--GDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGL 389 (583)
Q Consensus 312 ~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~--~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l 389 (583)
+++++++||| ||.+++.+++++|+++|++||++||+|++|..+.. .+. ....+ .+ +....++ +.|+||.
T Consensus 143 ~~v~~~~~~~-tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~--~~~~~-~~-~~~~d~~-~~s~sK~--- 213 (356)
T 1v72_A 143 ACVSITQATE-VGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGC--SPAEM-TW-KAGVDAL-SFGATKN--- 213 (356)
T ss_dssp EEEEEESSCT-TSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTC--CTTTT-TG-GGTCCEE-EECCGGG---
T ss_pred eEEEEEcCCC-CCccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCC--CHHHh-hh-hhcCCEE-EEecccC---
Confidence 8898999987 99999999999999999999999999999975421 110 11100 00 1122344 4589997
Q ss_pred cCccce--EEEEEcCCchhHHHHHHHHHHHHhccc--cCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhh--c
Q psy14428 390 YGERVG--TFSVLTPTSDETERIMSQLKILIRGFY--SNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRG--F 463 (583)
Q Consensus 390 ~GlRiG--~lv~~~p~~~~~~~li~~l~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~--~ 463 (583)
|.|+| |+++ + +++++++........ ...+...+..+...++++.+.+..++.++..+.+.+.++. .
T Consensus 214 -g~~~G~g~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g 285 (356)
T 1v72_A 214 -GVLAAEAIVLF--N-----TSLATEMSYRRKRAGHLSSKMRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLGG 285 (356)
T ss_dssp -TCSSCEEEEES--S-----GGGHHHHHHHHHHTTCCCSSTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred -CCcCccEEEEE--C-----HHHHhhHHHHhhccCchhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 44788 6665 4 357777665433222 1223344555566676654444444444444444444432 2
Q ss_pred cC-CCccchhhHHHHh
Q psy14428 464 YS-NPPIHGARIVTEI 478 (583)
Q Consensus 464 ~~-~~p~~g~~i~~~~ 478 (583)
+. ..|..++++|..+
T Consensus 286 ~~~~~~~~~~~~~~~~ 301 (356)
T 1v72_A 286 VEVLGGTEANILFCRL 301 (356)
T ss_dssp EEEESCCCSSEEEEEE
T ss_pred cEEccCCCccEEEEEc
Confidence 33 2466677777544
|
| >3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B | Back alignment and structure |
|---|
Probab=99.85 E-value=3.7e-20 Score=196.06 Aligned_cols=192 Identities=15% Similarity=0.118 Sum_probs=153.8
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHH----HhhcC
Q psy14428 204 NIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRF----CTDSR 279 (583)
Q Consensus 204 ~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~----~~~~G 279 (583)
+..+..+||+++|++++.. +.|++ ++|+ +|+.++ +. +..+||.|++++|+|...... ++..|
T Consensus 65 ~~p~~~~l~~~la~~~g~~-------~~i~~--~sG~-~ai~~~---~~-l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~G 130 (403)
T 3cog_A 65 GNPTRNCLEKAVAALDGAK-------YCLAF--ASGL-AATVTI---TH-LLKAGDQIICMDDVYGGTNRYFRQVASEFG 130 (403)
T ss_dssp -CHHHHHHHHHHHHHHTCS-------EEEEE--SCHH-HHHHHH---HT-TSCTTCEEEEESSCCHHHHHHHHHTGGGGT
T ss_pred CCchHHHHHHHHHHHhCCC-------cEEEE--CCHH-HHHHHH---HH-HhCCCCEEEEeCCCcchHHHHHHHHHHHcC
Confidence 4466789999999999642 56777 7774 888875 44 567799999999999975443 46789
Q ss_pred CeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcC-eEEEEeccCCCCCCC
Q psy14428 280 LNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRH-LYPFFDMAYLGLTSG 358 (583)
Q Consensus 280 ~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~-i~iI~De~Y~~l~~~ 358 (583)
++++.++. + |++.+++.+ .++++++++++|+||||.+++ +++|+++|++++ +++|+||+|..+.+.
T Consensus 131 ~~v~~v~~-~------d~~~l~~~i---~~~t~~v~~~~p~nptG~~~~---l~~i~~la~~~g~~~livD~~~~~~~~~ 197 (403)
T 3cog_A 131 LKISFVDC-S------KIKLLEAAI---TPETKLVWIETPTNPTQKVID---IEGCAHIVHKHGDIILVVDNTFMSPYFQ 197 (403)
T ss_dssp CEEEEECT-T------SHHHHHHHC---CTTEEEEEEESSCTTTCCCCC---HHHHHHHHTSSSCCEEEEECTTTCTTTC
T ss_pred CEEEEECC-C------CHHHHHHhc---CcCCeEEEEECCCCCCCeeeC---HHHHHHHHHHcCCCEEEEECCCcccccC
Confidence 99999887 2 788888777 568899999999999999997 778889999999 999999999988754
Q ss_pred CCCCchHHHHHHHHhcCcEEEEecCcccccccCc-cceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHh
Q psy14428 359 DFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGE-RVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEIL 437 (583)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~Gl-RiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l 437 (583)
. + + + .+..+++.|+||.++.+|. |+||+++ ++ +++++++.........+.+.+.|+++...+
T Consensus 198 ~---~---~----~-~~~div~~S~sK~~~g~~~~~~G~v~~--~~----~~l~~~l~~~~~~~g~~~~~~~~~~~~~~l 260 (403)
T 3cog_A 198 R---P---L----A-LGADISMYSATKYMNGHSDVVMGLVSV--NC----ESLHNRLRFLQNSLGAVPSPIDCYLCNRGL 260 (403)
T ss_dssp C---T---T----T-TTCSEEEEETTTTTTCSSCCCCEEEEE--CC----HHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_pred C---c---c----c-cCCeEEEEcChhhccCCCCCeEEEEEE--Cc----HHHHHHHHHHHHhcCCCCCHHHHHHHHhhh
Confidence 2 1 1 1 2567999999999998774 7999999 65 478888887766666678889999988888
Q ss_pred CC
Q psy14428 438 SD 439 (583)
Q Consensus 438 ~~ 439 (583)
+.
T Consensus 261 ~~ 262 (403)
T 3cog_A 261 KT 262 (403)
T ss_dssp TT
T ss_pred hH
Confidence 75
|
| >3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.6e-20 Score=194.64 Aligned_cols=175 Identities=11% Similarity=0.030 Sum_probs=134.8
Q ss_pred CCHHHHHHHHHHHhCCCCCCCCCCCeE-EEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChh--hHHHHhhcCCeEE
Q psy14428 207 GDAKFCKLAAQLAYGEDFPAFKDNRLA-IVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNG--HVRFCTDSRLNVG 283 (583)
Q Consensus 207 G~~~Lr~aia~~~~~~~g~~~~~~~I~-i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~--~~~~~~~~G~~~~ 283 (583)
...++|++++++++ +++++++ + ++|+++++.++ +..+..+||+|++++|+|.. +...++..|++++
T Consensus 45 ~~~~l~~~la~~~g------~~~~~~~~~--~~s~t~al~~~---~~~l~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~ 113 (416)
T 3isl_A 45 IMNETMEMLRELFQ------TKNRWAYPI--DGTSRAGIEAV---LASVIEPEDDVLIPIYGRFGYLLTEIAERYGANVH 113 (416)
T ss_dssp HHHHHHHHHHHHTT------CCCSEEEEE--ESCHHHHHHHH---HHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHhC------CCCCcEEEe--cCcHHHHHHHH---HHHhcCCCCEEEEecCCcccHHHHHHHHhcCCeeE
Confidence 35677777777764 3455555 6 88888999985 44456779999999999987 7778899999999
Q ss_pred EEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCc
Q psy14428 284 AYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKD 363 (583)
Q Consensus 284 ~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~ 363 (583)
.+|+ ++ ++.+|++.+++.+.+ ++++++++++||||||.+++ +++|.++|+++|++||+|+++......- +
T Consensus 114 ~v~~-~~-~~~~d~~~l~~~i~~--~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~~~~~~---~ 183 (416)
T 3isl_A 114 MLEC-EW-GTVFDPEDIIREIKK--VKPKIVAMVHGETSTGRIHP---LKAIGEACRTEDALFIVDAVATIGGCEV---K 183 (416)
T ss_dssp EEEC-CT-TCCCCHHHHHHHHHH--HCCSEEEEESEETTTTEECC---CHHHHHHHHHTTCEEEEECTTTTTTSCC---C
T ss_pred EEec-CC-CCCCCHHHHHHHHhh--CCCcEEEEEccCCCCceecC---HHHHHHHHHHcCCEEEEECCccccCCCc---c
Confidence 9998 54 357899999998852 35789999999999999998 6678999999999999999986433211 0
Q ss_pred hHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHH
Q psy14428 364 AFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKIL 417 (583)
Q Consensus 364 ~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~ 417 (583)
.+..+..+++.|+||.++ .+.++|++++ + +++++++...
T Consensus 184 -------~~~~~~d~~~~s~~K~l~-g~~g~g~~~~--~-----~~~~~~~~~~ 222 (416)
T 3isl_A 184 -------VDEWKIDAAIGGTQKCLS-VPSGMAPITY--N-----ERVADVIAAR 222 (416)
T ss_dssp -------TTTTTCSEEECCSSSTTC-CCSSEEEEEE--C-----HHHHHHHHTC
T ss_pred -------hhhcCCCEEEecCccccC-CCCCeEEEEE--C-----HHHHHHhhcc
Confidence 112345689999999754 4456899999 6 5788887753
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.85 E-value=4.3e-20 Score=197.32 Aligned_cols=283 Identities=11% Similarity=0.041 Sum_probs=181.5
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
.+...+|+..+.+....|. .++.+.+++.+.+.......| +.....+|++++++++. .+++|++ |+||
T Consensus 53 ~g~~ylD~~~~~~~~~lG~--~~p~v~~a~~~~~~~~~~~~~-~~~~~~~l~~~la~~~~-------~~~~v~~--~~sG 120 (434)
T 3l44_A 53 DGNKYIDYLAAYGPIITGH--AHPHITKAITTAAENGVLYGT-PTALEVKFAKMLKEAMP-------ALDKVRF--VNSG 120 (434)
T ss_dssp TCCEEEECCGGGTTCSSCB--TCHHHHHHHHHHHHHCSCCSS-CCHHHHHHHHHHHHHCT-------TCSEEEE--ESSH
T ss_pred CCCEEEECCCchhccccCC--CCHHHHHHHHHHHHhCcCCCC-CCHHHHHHHHHHHHhCC-------CCCEEEE--eCch
Confidence 3556789988887666664 357888887776655323334 45566788888887753 3689999 9999
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCC--------------------eEEEEecccCCCCCCChhhH
Q psy14428 241 SGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRL--------------------NVGAYRYFDNKTNGLDFAGM 300 (583)
Q Consensus 241 ~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~--------------------~~~~v~~~d~~~~g~d~~~l 300 (583)
++|+..+..++... .+++.|++.+|+|..+.......+. .++.+|. -|++.+
T Consensus 121 sea~~~ai~~a~~~-~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l 192 (434)
T 3l44_A 121 TEAVMTTIRVARAY-TGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPF-------NNVETL 192 (434)
T ss_dssp HHHHHHHHHHHHHH-HCCCEEEEETTCCCCSSGGGGBC-------CCCBSSTTCCHHHHTTEEEECT-------TCHHHH
T ss_pred HHHHHHHHHHHHHh-hCCCEEEEEcCccCCCcHHHHhhcCCcccccCCCCcCCCCCcCCCceEecCc-------ccHHHH
Confidence 99999875443322 2478999999999876543333222 1222222 078888
Q ss_pred HHHHHcCCCCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEE
Q psy14428 301 MEDIKAMPERSILFLQTSSHNPTGVDL-SEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCL 379 (583)
Q Consensus 301 ~~~l~~~~~~~~~i~i~~p~NPTG~~~-s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~ 379 (583)
++.+++..+++++++++.++|++|.+. +++.+++|.++|++||++||+||+|.+| ..+ .......+ +....
T Consensus 193 e~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~-~~g---~~~~~~~~-~~~~d--- 264 (434)
T 3l44_A 193 KEALDKWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAF-RFM---YGGAQDLL-GVTPD--- 264 (434)
T ss_dssp HHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTT-TSS---SSCHHHHH-TCCCS---
T ss_pred HHHHHhCCCCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccce-ecc---ccHHHHHc-CCCCC---
Confidence 888864334455555544445555544 8999999999999999999999999999 433 11222222 22222
Q ss_pred EecCcccccccCccceEEEEEcCCchhHHHHHHHHHHH---HhccccCCChHHHHHHHHHhC---Chhhhhhhhh-HHHH
Q psy14428 380 AQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKIL---IRGFYSNPPIHGARIVTEILS---DPKLKAQCDE-TERI 452 (583)
Q Consensus 380 i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~---~~~~~~~~s~~~q~~~~~~l~---~~~~~~~~~~-~~~~ 452 (583)
+.||||.++ +|+|+||+++ + +++++.+.+. .....++.++++|.++...++ ++.+.++..+ .+.+
T Consensus 265 i~t~sK~~~-~G~~iG~~~~--~-----~~i~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~~~~~~~~~~~~~~l 336 (434)
T 3l44_A 265 LTALGKVIG-GGLPIGAYGG--K-----KEIMEQVAPLGPAYQAGTMAGNPASMASGIACLEVLQQEGLYEKLDELGATL 336 (434)
T ss_dssp EEEEEGGGG-TTSSCEEEEE--C-----HHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHH
T ss_pred eeehhhhhc-CCcCeeeEEE--c-----HHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 558999998 8999999988 6 5788877652 123356788899888877665 3333333322 2233
Q ss_pred HHHHHHHHhh--ccCCCccchhhHHHHhc
Q psy14428 453 MSQLKILIRG--FYSNPPIHGARIVTEIL 479 (583)
Q Consensus 453 ~~~l~~~~r~--~~~~~p~~g~~i~~~~l 479 (583)
.+.++.+... .....+..|.++++.+.
T Consensus 337 ~~~L~~~~~~~~~~~~~~~~g~~~~~~~~ 365 (434)
T 3l44_A 337 EKGILEQAAKHNIDITLNRLKGALTVYFT 365 (434)
T ss_dssp HHHHHHHHHHTTCCEEEEEETTEEEEEES
T ss_pred HHHHHHHHHhCCCCEEEEeeccEEEEEEe
Confidence 3334333221 11234556777776553
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 | Back alignment and structure |
|---|
Probab=99.84 E-value=5.3e-20 Score=198.38 Aligned_cols=208 Identities=13% Similarity=0.119 Sum_probs=148.4
Q ss_pred hHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCC----CCC
Q psy14428 184 PSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYP----GVK 259 (583)
Q Consensus 184 ~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~----~gd 259 (583)
+.+.+++.+.+... ...|.+..|..+||++++++++. ++|++ |+|+++|+.++.. .+.. +||
T Consensus 55 ~~v~~a~~~~~~~~-~~~y~~~~~~~~l~~~la~~~~~--------~~v~~--t~ggt~A~~~al~---~~~~~~~~~Gd 120 (467)
T 1ax4_A 55 NAMSDHQWAAMITG-DEAYAGSRNYYDLKDKAKELFNY--------DYIIP--AHQGRGAENILFP---VLLKYKQKEGK 120 (467)
T ss_dssp CCEEHHHHHHHHTC-CCCSSSCHHHHHHHHHHHHHHCC--------CEEEE--ESSHHHHHHHHHH---HHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhc-ccccccCccHHHHHHHHHHHcCC--------CcEEE--cCCcHHHHHHHHH---HHHHhhccCCC
Confidence 45555555544332 34688888999999999999953 58999 9999999998633 3333 599
Q ss_pred E---EEEcCCCChhhHHHHhhcCCeEEEEeccc---C-----CCCCCChhhHHHHHHcCC-CCcEEEEeCCCCCCC-CCC
Q psy14428 260 T---VYFPTPTWNGHVRFCTDSRLNVGAYRYFD---N-----KTNGLDFAGMMEDIKAMP-ERSILFLQTSSHNPT-GVD 326 (583)
Q Consensus 260 ~---Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d---~-----~~~g~d~~~l~~~l~~~~-~~~~~i~i~~p~NPT-G~~ 326 (583)
. |+++.|.|..+...++..|.+++.++... . .++.+|++.+++.+.... ++++++++++||||| |.+
T Consensus 121 ~~~~viv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~~~~vi~~~~~np~gG~~ 200 (467)
T 1ax4_A 121 AKNPVFISNFHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQP 200 (467)
T ss_dssp CSSCEEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBC
T ss_pred ccceEEEeccccchhhHHHhccCCceecccccccccccccCCcccccCHHHHHHHHHhcCCCCeeEEEEeccccCCCccC
Confidence 8 99998888988888999999988776521 1 134689999999985422 368899999999999 899
Q ss_pred CCHHHHHHHHHHHHhcCeEEEEeccCCC----------CCCCCCCCchHHHH-HHHHhcCcEEEEecCcccccccCccc-
Q psy14428 327 LSEDQWRQLAVVVKQRHLYPFFDMAYLG----------LTSGDFDKDAFSLR-YFAKEVGQLCLAQSFSKNMGLYGERV- 394 (583)
Q Consensus 327 ~s~~~~~~l~~~a~~~~i~iI~De~Y~~----------l~~~~~~~~~~~~~-~~~~~~~~vi~i~S~SK~~~l~GlRi- 394 (583)
++.+++++|+++|++||++||+||++.. +.+.+ .+...+. ......+ +++.|+||.++++ +
T Consensus 201 ~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~d--~~~~s~sK~~g~~---~G 273 (467)
T 1ax4_A 201 VSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKN--ATIKEVIFDMYKYAD--ALTMSAKKDPLLN---IG 273 (467)
T ss_dssp CCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTT--CCHHHHHHHHGGGCS--EEEEETTSTTCCS---SC
T ss_pred CChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCC--Cchhhhhhhhccccc--eEEEeccccCCCC---cc
Confidence 9999999999999999999999998432 12222 1222221 0001122 4568999999865 3
Q ss_pred eEEEEEcCCchhHHHHHHHHHHH
Q psy14428 395 GTFSVLTPTSDETERIMSQLKIL 417 (583)
Q Consensus 395 G~lv~~~p~~~~~~~li~~l~~~ 417 (583)
||+++ +++ .++++++...
T Consensus 274 g~~~~--~d~---~~l~~~~~~~ 291 (467)
T 1ax4_A 274 GLVAI--RDN---EEIFTLARQR 291 (467)
T ss_dssp EEEEE--SSC---HHHHHHHHHH
T ss_pred eEEEe--CCH---HHHHHHHHhh
Confidence 56666 543 1466666544
|
| >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.3e-19 Score=190.65 Aligned_cols=193 Identities=13% Similarity=0.121 Sum_probs=153.1
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHH----HhhcC
Q psy14428 204 NIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRF----CTDSR 279 (583)
Q Consensus 204 ~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~----~~~~G 279 (583)
+..+..+||+++++++... +.|++ ++| ++|+.++ +..+..+||.|++++|+|...... ++..|
T Consensus 50 ~~~~~~~l~~~la~~~~~~-------~~i~~--~sG-t~a~~~~---~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g 116 (386)
T 1cs1_A 50 GNPTRDVVQRALAELEGGA-------GAVLT--NTG-MSAIHLV---TTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGC 116 (386)
T ss_dssp CCHHHHHHHHHHHHHHTCS-------EEEEE--SSH-HHHHHHH---HHHHCCTTCEEEEETTCCHHHHHHHHHHHTTTS
T ss_pred CCccHHHHHHHHHHHhCCC-------cEEEe--CCH-HHHHHHH---HHHHhCCCCEEEEecCCcHhHHHHHHHHHHhcC
Confidence 4567789999999999631 56777 777 8999985 444566799999999999975443 46779
Q ss_pred CeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCC
Q psy14428 280 LNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGD 359 (583)
Q Consensus 280 ~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~ 359 (583)
++++.++. + |++.+++.++ ++++++++++||||||.+++ +++|.++|+++|+++|+||+|..+.+..
T Consensus 117 ~~~~~~~~-~------d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~ 183 (386)
T 1cs1_A 117 YRVLFVDQ-G------DEQALRAALA---EKPKLVLVESPSNPLLRVVD---IAKICHLAREVGAVSVVDNTFLSPALQN 183 (386)
T ss_dssp CEEEEECT-T------CHHHHHHHHH---TCCSEEEEECSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCC
T ss_pred CEEEEeCC-C------CHHHHHHhhc---cCCcEEEEeCCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCcccccCC
Confidence 99988876 2 7889988884 46788999999999999996 6788889999999999999999887642
Q ss_pred CCCchHHHHHHHHhcCcEEEEecCcccccccCccc-eEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhC
Q psy14428 360 FDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERV-GTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILS 438 (583)
Q Consensus 360 ~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRi-G~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~ 438 (583)
++ ..+..+++.|+||.++.+|.|+ ||+++ ++ +++++++.........+.+.+.|.++...++
T Consensus 184 ------~~-----~~~~di~~~s~sK~~~~~~~~~~G~~~~--~~----~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 246 (386)
T 1cs1_A 184 ------PL-----ALGADLVLHSCTKYLNGHSDVVAGVVIA--KD----PDVVTELAWWANNIGVTGGAFDSYLLLRGLR 246 (386)
T ss_dssp ------GG-----GGTCSEEEEETTTTTTCSSCCCCEEEEE--SS----HHHHHHHHHHHHHHTCBCCHHHHHHHHHHHT
T ss_pred ------cc-----ccCceEEEEcCcccccCCCCceeEEEEe--Cc----HHHHHHHHHHHHhcCCCCCHHHHHHHHhccc
Confidence 11 1357799999999999999998 99999 64 3688888776655456678888888777665
Q ss_pred C
Q psy14428 439 D 439 (583)
Q Consensus 439 ~ 439 (583)
.
T Consensus 247 ~ 247 (386)
T 1cs1_A 247 T 247 (386)
T ss_dssp T
T ss_pred H
Confidence 3
|
| >3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.6e-19 Score=190.37 Aligned_cols=192 Identities=16% Similarity=0.084 Sum_probs=151.8
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHH----HhhcCC
Q psy14428 205 IGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRF----CTDSRL 280 (583)
Q Consensus 205 ~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~----~~~~G~ 280 (583)
.....+|+++++++++. ++.++ +++|++|+.++ +..+..+||+|++++|+|..+... ++..|+
T Consensus 58 ~~~~~~l~~~la~~~g~--------~~~i~--~~sG~~ai~~~---~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~ 124 (389)
T 3acz_A 58 NPTVEQFEEMVCSIEGA--------AGSAA--FGSGMGAISSS---TLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFGI 124 (389)
T ss_dssp CHHHHHHHHHHHHHHTC--------SEEEE--ESSHHHHHHHH---HTTTCCTTCEEEEESSCCHHHHHHHHHHHHHTTC
T ss_pred ChHHHHHHHHHHHHhCC--------CeEEE--eCCHHHHHHHH---HHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCC
Confidence 45567999999999853 24455 55667999874 444567799999999999987665 577899
Q ss_pred eEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCC
Q psy14428 281 NVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDF 360 (583)
Q Consensus 281 ~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~ 360 (583)
+++.++.. |++.+++.+ .++++++++++|+||||.+++ +++|.++|+++|+++|+||+|..+.+..
T Consensus 125 ~~~~v~~~-------d~~~l~~~i---~~~~~~v~~~~~~nptG~~~~---l~~i~~~~~~~~~~livD~~~~~~~~~~- 190 (389)
T 3acz_A 125 EVDLIDTS-------DVEKVKAAW---KPNTKMVYLESPANPTCKVSD---IKGIAVVCHERGARLVVDATFTSPCFLK- 190 (389)
T ss_dssp EEEEECTT-------CHHHHHHTC---CTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECTTTCTTTCC-
T ss_pred EEEEECCC-------CHHHHHHhc---CCCCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCccccccC-
Confidence 99988761 778887766 567899999999999999997 6778889999999999999998876532
Q ss_pred CCchHHHHHHHHhcCcEEEEecCcccccccCccc-eEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCC
Q psy14428 361 DKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERV-GTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSD 439 (583)
Q Consensus 361 ~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRi-G~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~ 439 (583)
+ + + .+..+++.|+||.++.+|.|+ ||+++ ++ +++++++.........+.+.+.++++...++.
T Consensus 191 --~---~----~-~~~di~~~S~sK~~~~~~~~~~G~v~~--~~----~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~ 254 (389)
T 3acz_A 191 --P---L----E-LGADIALHSVSKYINGHGDVIGGVSSA--KT----AEDIATIKFYRKDAGSLMAPMDAFLCARGMKT 254 (389)
T ss_dssp --G---G----G-TTCSEEEEETTTTTTCSSCCCCEEEEE--SS----HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTT
T ss_pred --c---c----c-cCCeEEEECChhhccCCCCceeEEEEE--Cc----HHHHHHHHHHHHhcCCCCCHHHHHHHHcCccH
Confidence 1 1 1 356799999999999999999 99999 63 26888888766545566788888888887765
|
| >3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=99.84 E-value=5.3e-20 Score=194.46 Aligned_cols=196 Identities=11% Similarity=0.041 Sum_probs=144.4
Q ss_pred CChHHHHHHHHHhccCCCCCCCC--CCCCHHHHHHHHHHHhCCCCCCCCCCC-eEEEecCCchhHHHHHHHHHHHhCCCC
Q psy14428 182 VLPSVKEAERRIYEKNLDHEYAN--IGGDAKFCKLAAQLAYGEDFPAFKDNR-LAIVQGISGSGSLRVGTAFLERFYPGV 258 (583)
Q Consensus 182 ~~~~v~~a~~~~~~~~~~~~Y~~--~~G~~~Lr~aia~~~~~~~g~~~~~~~-I~i~~t~G~~~al~l~~~~l~~~~~~g 258 (583)
+++.+.+++.+.. ...|.+ .....++++.++++++. ++++ |++ |+|+++|+.++ +..+..+|
T Consensus 24 ~~~~v~~a~~~~~----~~~~~~~~~~~~~~~~~~la~~~~~------~~~~~v~~--~~sgt~al~~~---~~~~~~~g 88 (411)
T 3nnk_A 24 ADPRVLRAMSSQL----IGQYDPAMTHYMNEVMALYRGVFRT------ENRWTMLV--DGTSRAGIEAI---LVSAIRPG 88 (411)
T ss_dssp CCHHHHHHHTSCC----CCTTCHHHHHHHHHHHHHHHHHHTC------CCSEEEEE--ESCHHHHHHHH---HHHHCCTT
T ss_pred CCHHHHHHhhccc----cccccHHHHHHHHHHHHHHHHHhCC------CCCcEEEE--CCCcHHHHHHH---HHHhcCCC
Confidence 4567777654321 122222 12346778888887753 2344 777 88899999985 44456779
Q ss_pred CEEEEcCCCChh--hHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHH
Q psy14428 259 KTVYFPTPTWNG--HVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLA 336 (583)
Q Consensus 259 d~Vlv~~P~y~~--~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~ 336 (583)
|+|++++|+|.. +...++..|++++.+|+ +. ++.+|++.+++.+.+ .+++++++++||||||.+++ +++|+
T Consensus 89 d~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~-~~-~~~~d~~~l~~~i~~--~~~~~v~~~~~~nptG~~~~---l~~i~ 161 (411)
T 3nnk_A 89 DKVLVPVFGRFGHLLCEIARRCRAEVHTIEV-PW-GEVFTPDQVEDAVKR--IRPRLLLTVQGDTSTTMLQP---LAELG 161 (411)
T ss_dssp CEEEEEECSHHHHHHHHHHHHTTCEEEEEEC-CT-TCCCCHHHHHHHHHH--HCCSEEEEESEETTTTEECC---CTTHH
T ss_pred CEEEEecCCchHHHHHHHHHHcCCeEEEEec-CC-CCCCCHHHHHHHHhh--CCCeEEEEeCCCCCcceecc---HHHHH
Confidence 999999999976 88899999999999998 43 467899999998853 26788999999999999988 66788
Q ss_pred HHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHH
Q psy14428 337 VVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKI 416 (583)
Q Consensus 337 ~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~ 416 (583)
++|+++|++||+||++......- . .+..+..+++.|+||.++ .+.++||+++ + +++++++..
T Consensus 162 ~l~~~~~~~li~Dea~~~~~~~~------~----~~~~~~d~~~~s~~K~l~-~~~g~g~~~~--~-----~~~~~~~~~ 223 (411)
T 3nnk_A 162 EICRRYDALFYTDATASLGGNPL------E----TDVWGLDAVSAGMQKCLG-GPSGTSPITL--S-----ARMEEAIRR 223 (411)
T ss_dssp HHHHHHTCEEEEECTTTBTTBCC------C----TTTTTCSEEECCSTTTTC-CCSSEEEEEE--C-----HHHHHHHHT
T ss_pred HHHHHcCCEEEEECCcccCCccc------c----hhccCCcEEEecCccccC-CCCceEEEEE--C-----HHHHHHHhh
Confidence 89999999999999976432210 1 112245689999999854 4456899999 6 578888876
Q ss_pred H
Q psy14428 417 L 417 (583)
Q Consensus 417 ~ 417 (583)
.
T Consensus 224 ~ 224 (411)
T 3nnk_A 224 R 224 (411)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-20 Score=195.20 Aligned_cols=244 Identities=11% Similarity=-0.022 Sum_probs=153.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCC--EEEEcCCCChhhHH---
Q psy14428 199 DHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVK--TVYFPTPTWNGHVR--- 273 (583)
Q Consensus 199 ~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd--~Vlv~~P~y~~~~~--- 273 (583)
...|++..+..+|+++++++++. +..++ ++||++++.++ +..+..+|| .|+++.+++.....
T Consensus 40 ~~~y~~~~~~~~l~~~la~~~~~--------~~~i~--~~~G~~a~~~a---l~~~~~~gd~~~vi~~~~~~~~~~~~~~ 106 (357)
T 3lws_A 40 SDQYGTGAIIEPFEQKFADVLGM--------DDAVF--FPSGTMAQQVA---LRIWSDETDNRTVAYHPLCHLEIHEQDG 106 (357)
T ss_dssp CEETTEETTHHHHHHHHHHHHTC--------SEEEE--ESCHHHHHHHH---HHHHHHHHTCCEEEECTTCHHHHSSTTH
T ss_pred cccccCChHHHHHHHHHHHHhCC--------CcEEE--ecCcHHHHHHH---HHHHhhcCCCcEEEecccceeeeeccch
Confidence 35588778899999999999863 22344 45567788764 333444477 67777766443322
Q ss_pred HHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCC-CCCCCHHHHHHHHHHHHhcCeEEEEeccC
Q psy14428 274 FCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPT-GVDLSEDQWRQLAVVVKQRHLYPFFDMAY 352 (583)
Q Consensus 274 ~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPT-G~~~s~~~~~~l~~~a~~~~i~iI~De~Y 352 (583)
.....|++++.++. +++.+|++.+++. .+++++++++||||| |.+++.+++++|+++|+++|++||+||+|
T Consensus 107 ~~~~~g~~~~~v~~---~~~~~d~~~l~~~-----~~~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~ 178 (357)
T 3lws_A 107 LKELHPIETILVGA---ADRLMTLDEIKAL-----PDIACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGAR 178 (357)
T ss_dssp HHHHSSCEEEECSC---TTSCCCHHHHHTC-----CSCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETT
T ss_pred hhhccCcEEEEecC---CCCCcCHHHHhcC-----cCcceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECch
Confidence 34556899988875 3357899888764 237889999999998 99999999999999999999999999998
Q ss_pred CCC--CCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCC--ChH
Q psy14428 353 LGL--TSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNP--PIH 428 (583)
Q Consensus 353 ~~l--~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~--s~~ 428 (583)
... .+.+ . +...+....+ + ++.||||+++.++. ||+++ + +++++++.+.......+. +..
T Consensus 179 ~~~~~~~~~--~---~~~~~~~~~d-~-~~~s~sK~~~~~~g--g~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~ 242 (357)
T 3lws_A 179 LFEMLPYYE--K---TAAEIAGLFD-S-IYISFYKGLGGIAG--AILAG--P-----AAFCQTARIWKRRYGGDLISLYP 242 (357)
T ss_dssp HHHHHHHHT--C---CHHHHHTTSS-E-EEEESSSTTCCSSC--EEEEE--C-----HHHHHHHHHHHHHTTCCCSCCHH
T ss_pred hhhhhhhcC--C---ChHHHHhcCC-E-EEEeccccCCCCce--EEEEc--C-----HHHHHHHHHHHHHhcCCcccchH
Confidence 621 1111 1 1222222233 3 37899999943433 99998 6 588888887654443322 233
Q ss_pred HHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhh--ccCC--CccchhhHHHHhcCC
Q psy14428 429 GARIVTEILSDPKLKAQCDETERIMSQLKILIRG--FYSN--PPIHGARIVTEILSD 481 (583)
Q Consensus 429 ~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~--~~~~--~p~~g~~i~~~~l~~ 481 (583)
.+.++...+++ +.+.+++..+....+.+.++. .+.. .|++++++|+.+...
T Consensus 243 ~~~~~~~~l~~--~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~ 297 (357)
T 3lws_A 243 YIVSADYYYEL--RKDRMGQYYEQAKQLAEQFNALPGVHTTPEVPVSNMFHLHFDGQ 297 (357)
T ss_dssp HHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHTSTTEEEESSSCSSSEEEEEEESC
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhCCCCeeccCCCcceEEEEEecCC
Confidence 33333344432 111111112222222222332 2332 467888888877653
|
| >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.7e-19 Score=188.08 Aligned_cols=193 Identities=10% Similarity=0.028 Sum_probs=150.6
Q ss_pred ChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHh-CCCCCEE
Q psy14428 183 LPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERF-YPGVKTV 261 (583)
Q Consensus 183 ~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~-~~~gd~V 261 (583)
++.+.+++.+.+... .|.+..+..+||++++++++. +++++ |+|+++|+.++ +..+ ..+||+|
T Consensus 19 ~~~~~~a~~~~~~~~---~~~~~~~~~~l~~~la~~~~~--------~~~~~--~~~gt~al~~~---~~~~~~~~gd~V 82 (393)
T 1mdo_A 19 GAEELAAVKTVLDSG---WITTGPKNQELEAAFCRLTGN--------QYAVA--VSSATAGMHIA---LMALGIGEGDEV 82 (393)
T ss_dssp CHHHHHHHHHHHHHT---CCSSSHHHHHHHHHHHHHHCC--------SEEEE--ESCHHHHHHHH---HHHTTCCTTCEE
T ss_pred CHHHHHHHHHHHhcC---CcCCChHHHHHHHHHHHHhCC--------CcEEE--ecChHHHHHHH---HHHcCCCCCCEE
Confidence 356677777766542 245677899999999999963 36888 99999999985 4455 6779999
Q ss_pred EEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHh
Q psy14428 262 YFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQ 341 (583)
Q Consensus 262 lv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~ 341 (583)
++++|+|..+...++..|++++.+++ +++++.+|++.+++.+ .+++++++++ ||||...+ +++|.++|++
T Consensus 83 l~~~~~~~~~~~~~~~~g~~~~~v~~-~~~~~~~d~~~l~~~l---~~~~~~v~~~---~~~G~~~~---~~~i~~l~~~ 152 (393)
T 1mdo_A 83 ITPSMTWVSTLNMIVLLGANPVMVDV-DRDTLMVTPEHIEAAI---TPQTKAIIPV---HYAGAPAD---LDAIYALGER 152 (393)
T ss_dssp EEESSSCHHHHHHHHHTTCEEEEECB-CTTTCCBCHHHHHHHC---CTTEEEECCB---CGGGCCCC---HHHHHHHHHH
T ss_pred EeCCCccHhHHHHHHHCCCEEEEEec-cCCcCCCCHHHHHHhc---CCCceEEEEe---CCCCCcCC---HHHHHHHHHH
Confidence 99999999999999999999999998 6555678999998887 4567877765 48999875 6778889999
Q ss_pred cCeEEEEeccCCCC-CCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHH
Q psy14428 342 RHLYPFFDMAYLGL-TSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILI 418 (583)
Q Consensus 342 ~~i~iI~De~Y~~l-~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~ 418 (583)
++++||+||+|... .+.+ .+ + .. ..+++.||||+.+++|.|+||+++ ++ +++++++....
T Consensus 153 ~~~~li~D~a~~~g~~~~~--~~---~----~~--~d~~~~S~~k~K~l~~~~~g~~~~--~~----~~~~~~l~~~~ 213 (393)
T 1mdo_A 153 YGIPVIEDAAHATGTSYKG--RH---I----GA--RGTAIFSFHAIKNITCAEGGIVVT--DN----PQFADKLRSLK 213 (393)
T ss_dssp HTCCBCEECTTCTTCEETT--EE---T----TS--SSEEEEECCTTSSSCSSSCEEEEE--SC----HHHHHHHHHHT
T ss_pred cCCeEEEECccccCCeECC--ee---c----CC--CCeEEEeCCCCCccccccceEEEe--CC----HHHHHHHHHHH
Confidence 99999999999864 3432 11 1 11 678999999555556679999999 65 36888877654
|
| >2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.4e-20 Score=196.96 Aligned_cols=280 Identities=14% Similarity=0.081 Sum_probs=182.0
Q ss_pred CCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCC---CCHH--HHH-----HHHHHHhCCCCCCCCCCCe
Q psy14428 163 PKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIG---GDAK--FCK-----LAAQLAYGEDFPAFKDNRL 232 (583)
Q Consensus 163 ~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~---G~~~--Lr~-----aia~~~~~~~g~~~~~~~I 232 (583)
.+.+++..+... .++.+.+++.+.+.+....+|++.. |.+. +++ .++++++ +++++|
T Consensus 23 ~~~i~~~~~~~~-------~~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g------~~~~~i 89 (407)
T 2dkj_A 23 REGLELIASENF-------VSKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFG------AAWANV 89 (407)
T ss_dssp HTSEECCTTCCC-------CCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHT------CSEEEC
T ss_pred hcceeeccCCCC-------CCHHHHHHHHhhhhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHhC------CCcceE
Confidence 356888887753 2578888887776532234565443 6554 444 5556553 235667
Q ss_pred EEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhh---HHHHhhcCCe--EEEEecccCCCCCCChhhHHHHHHcC
Q psy14428 233 AIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGH---VRFCTDSRLN--VGAYRYFDNKTNGLDFAGMMEDIKAM 307 (583)
Q Consensus 233 ~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~---~~~~~~~G~~--~~~v~~~d~~~~g~d~~~l~~~l~~~ 307 (583)
++ ++|+. |+.++ +..+..+||+|++++|+|..+ ...++..|.+ .+++++ +++++.+|++.+++.+..
T Consensus 90 ~~--~sGt~-a~~~~---~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~d~~~l~~~l~~- 161 (407)
T 2dkj_A 90 QP--HSGSQ-ANMAV---YMALMEPGDTLMGMDLAAGGHLTHGSRVNFSGKLYKVVSYGV-RPDTELIDLEEVRRLALE- 161 (407)
T ss_dssp CC--SSHHH-HHHHH---HHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECC-CTTTSSCCHHHHHHHHHH-
T ss_pred Ee--cchHH-HHHHH---HHHhcCCCCEEEEecccccCccchHHHHHhcCceEEEEecCC-CcccCccCHHHHHHHHhh-
Confidence 77 77764 88885 444566799999999999888 3455566664 444444 333578999999998852
Q ss_pred CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCC-CCCCCCCCchHHHHHHHHhcCcEEEEecCccc
Q psy14428 308 PERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLG-LTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKN 386 (583)
Q Consensus 308 ~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~-l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~ 386 (583)
.+++++++++|+|| ...+ +++|.++|+++|++||+||+|.. +.+.+. .... .+ ...+++.||||.
T Consensus 162 -~~~~~v~~~~p~~~--~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~--~~~~----~~--~~di~~~s~sK~ 227 (407)
T 2dkj_A 162 -HRPKVIVAGASAYP--RFWD---FKAFREIADEVGAYLVVDMAHFAGLVAAGL--HPNP----LP--YAHVVTSTTHKT 227 (407)
T ss_dssp -HCCSEEEECCSSCC--SCCC---HHHHHHHHHHHTCEEEEECTTTHHHHHTTC--SCCC----TT--TCSEEEEESSGG
T ss_pred -cCCeEEEEeccccC--CCCC---HHHHHHHHHHcCCEEEEEccccccccccCc--cCCc----cc--cccEEEEecccc
Confidence 25677888999998 4454 78889999999999999999987 544331 1111 11 257889999994
Q ss_pred ccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHH-HHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccC
Q psy14428 387 MGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGAR-IVTEILSDPKLKAQCDETERIMSQLKILIRGFYS 465 (583)
Q Consensus 387 ~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~-~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~ 465 (583)
++|.|+||+++ ++ +++++++.........+.+...+. ++...++.
T Consensus 228 --l~g~~~G~~~~--~~----~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~-------------------------- 273 (407)
T 2dkj_A 228 --LRGPRGGLILS--ND----PELGKRIDKLIFPGIQGGPLEHVIAGKAVAFFE-------------------------- 273 (407)
T ss_dssp --GCCCSCEEEEE--SC----HHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHH--------------------------
T ss_pred --CCCCCceEEEE--CC----HHHHHHHHhhhcccccCCCcHHHHHHHHHHHHH--------------------------
Confidence 57999999999 64 367777776553333333222222 22222211
Q ss_pred CCccchhhHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccc-ccccceeecCCCh
Q psy14428 466 NPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHIT-NQKGMFCYTGLSA 536 (583)
Q Consensus 466 ~~p~~g~~i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~-~~~g~f~~~~l~~ 536 (583)
...+.++++++++.+.++.+.+.|++.+ +.... +..|.|.|..++.
T Consensus 274 ---------------------~~~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~ 320 (407)
T 2dkj_A 274 ---------------------ALQPEFKEYSRLVVENAKRLAEELARRG----YRIVTGGTDNHLFLVDLRP 320 (407)
T ss_dssp ---------------------HHSHHHHHHHHHHHHHHHHHHHHHHHTT----CEEGGGSCSSSEEEEECGG
T ss_pred ---------------------HHHhhHHHHHHHHHHHHHHHHHHHHhCC----ceeecCCCCceEEEEECcc
Confidence 0012345667777888888888888763 33333 3567777876653
|
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-19 Score=193.65 Aligned_cols=284 Identities=12% Similarity=0.014 Sum_probs=182.8
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
.+...+|++.|.+....|. .++.+.+++.+.++......| ..++++++++++.+..+ .+++|++ |+||
T Consensus 50 ~g~~~lD~~~~~~~~~lG~--~~p~v~~a~~~~~~~~~~~~~-----~~~~~~~la~~l~~~~~---~~~~v~~--~~gg 117 (427)
T 3fq8_A 50 DGNRYIDYVGTWGPAICGH--AHPEVIEALKVAMEKGTSFGA-----PCALENVLAEMVNDAVP---SIEMVRF--VNSG 117 (427)
T ss_dssp TSCEEEESSGGGTTCTTCB--TCHHHHHHHHHHHTTCSCCSS-----CCHHHHHHHHHHHHHST---TCSEEEE--ESSH
T ss_pred CCCEEEECCCchhhhccCC--CCHHHHHHHHHHHHhCCCcCC-----CCHHHHHHHHHHHHhCC---CCCEEEE--eCCH
Confidence 3456789999987666664 357888888877755322223 34556666666655443 4789999 9999
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhc-CC-------------------eEEEEecccCCCCCCChhhH
Q psy14428 241 SGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDS-RL-------------------NVGAYRYFDNKTNGLDFAGM 300 (583)
Q Consensus 241 ~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~-G~-------------------~~~~v~~~d~~~~g~d~~~l 300 (583)
++|++.+..+...+.. ++.|++.+|+|..+...+... |. .++.+|. + |++.+
T Consensus 118 sea~~~al~~a~~~~~-~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-d~~~l 189 (427)
T 3fq8_A 118 TEACMAVLRIMRAYTG-RDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPY------N-DLEAV 189 (427)
T ss_dssp HHHHHHHHHHHHHHHC-CCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEET------T-CHHHH
T ss_pred HHHHHHHHHHHHHhhC-CCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCC------C-CHHHH
Confidence 9999987544444433 589999999997654322222 11 1333332 0 78899
Q ss_pred HHHHHcCCCCcEEEEeCCCCCCCCCCCC-HHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEE
Q psy14428 301 MEDIKAMPERSILFLQTSSHNPTGVDLS-EDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCL 379 (583)
Q Consensus 301 ~~~l~~~~~~~~~i~i~~p~NPTG~~~s-~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~ 379 (583)
++.+++...++++++++.++|++|.+.+ ++.+++|.++|++||++||+||+|.+| ..+ ....... .+...-
T Consensus 190 e~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g---~~~~~~~----~~~~~d 261 (427)
T 3fq8_A 190 KALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGF-RIA---YGGVQEK----FGVTPD 261 (427)
T ss_dssp HHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBT-TTB---TTHHHHH----TTCCCS
T ss_pred HHHHHhCCCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccccc-ccC---cchhhHh----cCCCCC
Confidence 9988765556777777777778886665 566999999999999999999999998 443 1112211 222223
Q ss_pred EecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHH---hccccCCChHHHHHHHHHhC---ChhhhhhhhhHH-HH
Q psy14428 380 AQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILI---RGFYSNPPIHGARIVTEILS---DPKLKAQCDETE-RI 452 (583)
Q Consensus 380 i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~---~~~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~-~~ 452 (583)
+.||||.++ +|+|+||+++ + +++++.+.... ....++.+++++.++...++ ++.+.++..+.. ..
T Consensus 262 i~t~sK~~~-~G~~~G~~~~--~-----~~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~ 333 (427)
T 3fq8_A 262 LTTLGKIIG-GGLPVGAYGG--K-----REIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRL 333 (427)
T ss_dssp EEEECGGGG-TTSSCEEEEE--C-----HHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHH
T ss_pred hhhhhhhhh-CCcceEEEEE--c-----HHHHHhhccCCCccccCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 569999999 8999999998 6 57888776532 22344668888888877764 333333333322 33
Q ss_pred HHHHHHHHhh-cc-CCCccchhhHHHHhcC
Q psy14428 453 MSQLKILIRG-FY-SNPPIHGARIVTEILS 480 (583)
Q Consensus 453 ~~~l~~~~r~-~~-~~~p~~g~~i~~~~l~ 480 (583)
.+.++.+... .. ..++..|.++++.+..
T Consensus 334 ~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~ 363 (427)
T 3fq8_A 334 SDGLLAIAQETGHAACGGQVSGMFGFFFTE 363 (427)
T ss_dssp HHHHHHHHHHTTCCCEEEEETTEEEEESSS
T ss_pred HHHHHHHHHhCCCCeEEEEeeeEEEEEEec
Confidence 3334433322 12 2334557777666543
|
| >3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.4e-19 Score=189.15 Aligned_cols=193 Identities=15% Similarity=0.094 Sum_probs=156.5
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHH----hhcC
Q psy14428 204 NIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFC----TDSR 279 (583)
Q Consensus 204 ~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~----~~~G 279 (583)
+.....+||+.++++++. +++++ ++||++|+.++ +..+..+||+|++++|+|..+...+ +..|
T Consensus 64 ~~~~~~~l~~~la~~~g~--------~~~~~--~~sGt~A~~~a---l~~~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~g 130 (392)
T 3qhx_A 64 GNPTRTALEAALAAVEDA--------AFGRA--FSSGMAAADCA---LRAMLRPGDHVVIPDDAYGGTFRLIDKVFTGWN 130 (392)
T ss_dssp CCHHHHHHHHHHHHHTTC--------SEEEE--ESSHHHHHHHH---HHHHCCTTCEEEEETTCCHHHHHHHHHTGGGGT
T ss_pred CChHHHHHHHHHHHHhCC--------CcEEE--ECCHHHHHHHH---HHHHhCCCCEEEEeCCCcchHHHHHHHHHHhcC
Confidence 445567899999998753 35777 88889999885 4445677999999999999877766 6789
Q ss_pred CeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCC
Q psy14428 280 LNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGD 359 (583)
Q Consensus 280 ~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~ 359 (583)
++++.+++ + |++.+++.+ .++++++++++|+||||.+.+ +++|.++|+++|+++|+||+|.......
T Consensus 131 ~~~~~v~~-~------d~~~l~~~i---~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~g~~li~D~~~~~~~~~~ 197 (392)
T 3qhx_A 131 VEYTPVAL-A------DLDAVRAAI---RPTTRLIWVETPTNPLLSIAD---IAGIAQLGADSSAKVLVDNTFASPALQQ 197 (392)
T ss_dssp CEEEEECT-T------CHHHHHHHC---CTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECTTTCTTTCC
T ss_pred cEEEEeCC-C------CHHHHHHhh---CCCCeEEEEECCCCCCcEEec---HHHHHHHHHHcCCEEEEECCCcccccCC
Confidence 99998877 2 788888877 568999999999999999987 7778999999999999999998664332
Q ss_pred CCCchHHHHHHHHhcCcEEEEecCcccccccC-ccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhC
Q psy14428 360 FDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYG-ERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILS 438 (583)
Q Consensus 360 ~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~G-lRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~ 438 (583)
+ . ..+..+++.|+||.++.+| +|+||+++ ++ +++++.+.........+.+++.++++...++
T Consensus 198 ----~--~-----~~~~di~~~S~sK~lg~~g~~~~G~v~~--~~----~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~ 260 (392)
T 3qhx_A 198 ----P--L-----SLGADVVLHSTTKYIGGHSDVVGGALVT--ND----EELDQSFAFLQNGAGAVPGPFDAYLTMRGLK 260 (392)
T ss_dssp ----G--G-----GGTCSEEEEETTTTTTCSSCCCCEEEEE--SC----HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHT
T ss_pred ----h--H-----HhCCcEEEEcCccccCCCCCceEEEEEE--Cc----HHHHHHHHHHHHhcCCCCCHHHHHHHHhhhh
Confidence 1 1 1245689999999999777 89999999 65 4788888887777778889999999888887
Q ss_pred C
Q psy14428 439 D 439 (583)
Q Consensus 439 ~ 439 (583)
.
T Consensus 261 ~ 261 (392)
T 3qhx_A 261 T 261 (392)
T ss_dssp T
T ss_pred H
Confidence 5
|
| >3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=5e-20 Score=193.22 Aligned_cols=197 Identities=10% Similarity=-0.011 Sum_probs=143.9
Q ss_pred CChHHHHHHHHHhccCCCCCCCC--CCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCC
Q psy14428 182 VLPSVKEAERRIYEKNLDHEYAN--IGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVK 259 (583)
Q Consensus 182 ~~~~v~~a~~~~~~~~~~~~Y~~--~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd 259 (583)
+++.+.+++.+.. ...|.+ .....++++++++++... .+++|++ |+|+++++.++ +..+..+||
T Consensus 34 ~~~~v~~a~~~~~----~~~~~~~~~~~~~~l~~~la~~~~~~-----~~~~v~~--~~gg~~al~~~---~~~~~~~gd 99 (393)
T 3kgw_A 34 LAPRVLAAGSLRM----IGHMQKEMLQIMEEIKQGIQYVFQTR-----NPLTLVV--SGSGHCAMETA---LFNLLEPGD 99 (393)
T ss_dssp CCHHHHHHTTCCC----CCTTSHHHHHHHHHHHHHHHHHHTCC-----CSEEEEE--SCCTTTHHHHH---HHHHCCTTC
T ss_pred CCHHHHHHhcccc----cCcccHHHHHHHHHHHHHHHHHhCCC-----CCcEEEE--eCCcHHHHHHH---HHhcCCCCC
Confidence 4567777654321 112222 234567888888887531 2346999 99999999985 445577799
Q ss_pred EEEEcCCCCh--hhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHH
Q psy14428 260 TVYFPTPTWN--GHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAV 337 (583)
Q Consensus 260 ~Vlv~~P~y~--~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~ 337 (583)
+|+++.|+|. .+...++..|++++.+|+ +++ +.+|++.+++.+.. .+++++++++||||||.+++ +++|.+
T Consensus 100 ~vl~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~-~~~d~~~l~~~i~~--~~~~~v~~~~~~nptG~~~~---l~~i~~ 172 (393)
T 3kgw_A 100 SFLTGTNGIWGMRAAEIADRIGARVHQMIK-KPG-EHYTLQEVEEGLAQ--HKPVLLFLVHGESSTGVVQP---LDGFGE 172 (393)
T ss_dssp EEEEEESSHHHHHHHHHHHHTTCEEEEEEC-CTT-CCCCHHHHHHHHHH--HCCSEEEEESEETTTTEECC---CTTHHH
T ss_pred EEEEEeCCchhHHHHHHHHHcCCceEEEeC-CCC-CCCCHHHHHHHHhh--CCCcEEEEeccCCcchhhcc---HHHHHH
Confidence 9999999875 336778889999999998 443 57899999999853 26788999999999999998 667899
Q ss_pred HHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHH
Q psy14428 338 VVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKIL 417 (583)
Q Consensus 338 ~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~ 417 (583)
+|+++|++||+||+|......- + .+..+..+++.|+||.++ .+.++||+++ + +++++.+...
T Consensus 173 l~~~~~~~li~De~~~~g~~~~---~-------~~~~~~d~~~~s~sK~~~-~~~g~g~~~~--~-----~~~~~~~~~~ 234 (393)
T 3kgw_A 173 LCHRYQCLLLVDSVASLGGVPI---Y-------MDQQGIDIMYSSSQKVLN-APPGISLISF--N-----DKAKYKVYSR 234 (393)
T ss_dssp HHHHTTCEEEEECTTTTTTSCC---C-------TTTTTCCEEEEESSSTTC-CCSSCEEEEE--C-----HHHHHHHHTC
T ss_pred HHHHcCCEEEEECCccccCccc---c-------hhhcCCCEEEecCccccc-CCCceeEEEE--C-----HHHHHHHhcc
Confidence 9999999999999987322110 0 112345688899999774 3345899999 6 5788887754
|
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.3e-19 Score=192.48 Aligned_cols=188 Identities=10% Similarity=0.043 Sum_probs=143.5
Q ss_pred CCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhh----cCCeE
Q psy14428 207 GDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTD----SRLNV 282 (583)
Q Consensus 207 G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~----~G~~~ 282 (583)
...+|++.++++.+ .+++++ ++||++|+.++ +..++.+||.|++++|+|..+...++. .|+++
T Consensus 82 ~~~~l~~~la~~~g--------~~~~~~--~~sG~~Ai~~a---l~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~ 148 (414)
T 3ndn_A 82 TVSVFEERLRLIEG--------APAAFA--TASGMAAVFTS---LGALLGAGDRLVAARSLFGSCFVVCSEILPRWGVQT 148 (414)
T ss_dssp HHHHHHHHHHHHHT--------CSEEEE--ESSHHHHHHHH---HHTTCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEE
T ss_pred HHHHHHHHHHHHHC--------CCcEEE--ECCHHHHHHHH---HHHHhCCCCEEEEcCCccchHHHHHHHHHHHcCcEE
Confidence 34667777777764 256777 88889999874 455677899999999999998877755 89999
Q ss_pred EEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCC
Q psy14428 283 GAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDK 362 (583)
Q Consensus 283 ~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~ 362 (583)
+.+|+ + |++.+++++ .++++++++++|+||||.+.+ +++|+++|+++|++||+||+|.......
T Consensus 149 ~~v~~-~------d~~~l~~ai---~~~t~~v~le~p~NptG~~~~---l~~i~~la~~~g~~livDe~~~~~~~~~--- 212 (414)
T 3ndn_A 149 VFVDG-D------DLSQWERAL---SVPTQAVFFETPSNPMQSLVD---IAAVTELAHAAGAKVVLDNVFATPLLQQ--- 212 (414)
T ss_dssp EEECT-T------CHHHHHHHT---SSCCSEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTHHHHCC---
T ss_pred EEeCC-C------CHHHHHHhc---CCCCeEEEEECCCCCCCcccc---HHHHHHHHHHcCCEEEEECCCcccccCC---
Confidence 99987 2 788888887 567889999999999999977 6678889999999999999997332211
Q ss_pred chHHHHHHHHhcCcEEEEecCcccccccC-ccceEEEEEcCCchhHHHHHH-HHHHHHhccccCCChHHHHHHHHHhC
Q psy14428 363 DAFSLRYFAKEVGQLCLAQSFSKNMGLYG-ERVGTFSVLTPTSDETERIMS-QLKILIRGFYSNPPIHGARIVTEILS 438 (583)
Q Consensus 363 ~~~~~~~~~~~~~~vi~i~S~SK~~~l~G-lRiG~lv~~~p~~~~~~~li~-~l~~~~~~~~~~~s~~~q~~~~~~l~ 438 (583)
++ ..+..+++.|+||.++.+| +|+|++++ + ++.+. .+.........+.+...++++...++
T Consensus 213 ---~~-----~~g~div~~S~sK~l~~~G~~~~G~vv~--~-----~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~l~ 275 (414)
T 3ndn_A 213 ---GF-----PLGVDVVVYSGTKHIDGQGRVLGGAILG--D-----REYIDGPVQKLMRHTGPAMSAFNAWVLLKGLE 275 (414)
T ss_dssp ---CG-----GGTCSEEEEETTTTTTCSSCCCCEEEEE--C-----HHHHTTHHHHHHHHHCCCCCHHHHHHHHHHGG
T ss_pred ---ch-----hcCCCeEeccCCccccCCCCceEEEEEE--C-----HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 11 2245689999999999889 89999999 6 35554 66655555555667776666665554
|
| >3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-19 Score=189.76 Aligned_cols=197 Identities=11% Similarity=0.053 Sum_probs=140.5
Q ss_pred CChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEE
Q psy14428 182 VLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTV 261 (583)
Q Consensus 182 ~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~V 261 (583)
+++.+.+++.+... ..|.+ +..++++++.+++.+..|.+.+.+.+++ |+|+++++.++ +..+..+||+|
T Consensus 30 ~~~~v~~a~~~~~~----~~~~~--~~~~~~~~~~~~la~~~g~~~~~~~i~~--~~ggt~al~~~---~~~~~~~gd~v 98 (376)
T 3f0h_A 30 SSEEVRAIGAEQVP----YFRTT--EFSSTMLENEKFMLEYAKAPEGSKAVFM--TCSSTGSMEAV---VMNCFTKKDKV 98 (376)
T ss_dssp CCHHHHHHHTSCCC----CCSSH--HHHHHHHHHHHHHHHHHTCCTTCEEEEE--SSCHHHHHHHH---HHHHCCTTCCE
T ss_pred CcHHHHHHhcCCCC----CCCCH--HHHHHHHHHHHHHHHHhCCCCCceEEEE--cCChhHHHHHH---HHhccCCCCeE
Confidence 45677776654321 12222 3334444444444444444433456777 89999999985 44556779999
Q ss_pred EEcCCCChhhH--HHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHH
Q psy14428 262 YFPTPTWNGHV--RFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVV 339 (583)
Q Consensus 262 lv~~P~y~~~~--~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a 339 (583)
++++|+|.... ..+...|++++.++. +. ++++|++.+++.+ .++++++++++||||||.+++ +++|.++|
T Consensus 99 i~~~~~~~~~~~~~~~~~~g~~~~~v~~-~~-~~~~d~~~l~~~~---~~~~~~v~~~~~~nptG~~~~---l~~i~~l~ 170 (376)
T 3f0h_A 99 LVIDGGSFGHRFVQLCEIHEIPYVALKL-EH-GKKLTKEKLYEYD---NQNFTGLLVNVDETSTAVLYD---TMMIGEFC 170 (376)
T ss_dssp EEEESSHHHHHHHHHHHHTTCCEEEEEC-CT-TCCCCHHHHHTTT---TSCCCEEEEESEETTTTEECC---HHHHHHHH
T ss_pred EEEeCChhhHHHHHHHHHcCCceEEEeC-CC-CCCCCHHHHHHhh---ccCceEEEEecccCCcceecC---HHHHHHHH
Confidence 99999766543 356778999999998 43 4788999987755 567889999999999999999 77889999
Q ss_pred HhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCccccc-ccCccceEEEEEcCCchhHHHHHHHHHH
Q psy14428 340 KQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMG-LYGERVGTFSVLTPTSDETERIMSQLKI 416 (583)
Q Consensus 340 ~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~-l~GlRiG~lv~~~p~~~~~~~li~~l~~ 416 (583)
+++|++||+|+++......- .+ +..+..+++.|+||.++ .+| +|++++ + +++++++..
T Consensus 171 ~~~~~~li~D~~~~~~~~~~------~~----~~~~~d~~~~s~~K~l~~~~G--~g~~~~--~-----~~~~~~~~~ 229 (376)
T 3f0h_A 171 KKNNMFFVCDCVSAFLADPF------NM----NECGADVMITGSQKVLACPPG--ISVIVL--A-----PRGVERVEK 229 (376)
T ss_dssp HHTTCEEEEECTTTTTTSCC------CH----HHHTCSEEEEETTTTTCCCSS--CEEEEE--C-----HHHHHHHHT
T ss_pred HHcCCEEEEEcCccccCccc------cc----cccCccEEEecCcccccCCCc--eEEEEE--C-----HHHHHHhhc
Confidence 99999999999988665321 12 12234588999999998 666 578888 6 578877764
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.8e-19 Score=193.43 Aligned_cols=291 Identities=12% Similarity=0.069 Sum_probs=182.9
Q ss_pred CCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCC-CCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 162 HPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANI-GGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 162 ~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~-~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
+...+|++.+.|....|.. ++.+.+++.+.+... . |... .+..++++++++.+.+..+ ..+++|++ |+|+
T Consensus 49 g~~~lD~~~~~~~~~lG~~--~~~v~~a~~~~~~~~--~-~~~~~~~~~~~~~~l~~~la~~~~--~~~~~v~~--~~gg 119 (449)
T 3a8u_X 49 GRKVYDSLSGLWTCGAGHT--RKEIQEAVAKQLSTL--D-YSPGFQYGHPLSFQLAEKITDLTP--GNLNHVFF--TDSG 119 (449)
T ss_dssp CCEEEETTHHHHTCTTCBS--CHHHHHHHHHHTTTC--S-CCCSSSCCCHHHHHHHHHHHTTSS--TTEEEEEE--ESSH
T ss_pred CCEEEECCccHhhccCCCC--CHHHHHHHHHHHHhC--C-CccccccCCHHHHHHHHHHHHhCC--CCCCEEEE--cCcH
Confidence 3456888888875555533 578888888777542 1 2222 4455677777777766543 46789999 9999
Q ss_pred hhHHHHHHHHHHHhC-----CCCCEEEEcCCCChhhH-HHHhhcCC------------eEEEEeccc-CC-C-CCCC---
Q psy14428 241 SGSLRVGTAFLERFY-----PGVKTVYFPTPTWNGHV-RFCTDSRL------------NVGAYRYFD-NK-T-NGLD--- 296 (583)
Q Consensus 241 ~~al~l~~~~l~~~~-----~~gd~Vlv~~P~y~~~~-~~~~~~G~------------~~~~v~~~d-~~-~-~g~d--- 296 (583)
++|++++..++..+. +++|+|++.+|+|..+. ..+...|. .+..++... .. . .++|
T Consensus 120 sea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~ 199 (449)
T 3a8u_X 120 SECALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKE 199 (449)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCCGGGTTCSSSCSS
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCccccCccccCChHH
Confidence 999998754433221 25899999999998764 34444331 233344310 00 0 1356
Q ss_pred -----hhhHHHHHHcCC-CCcEEEEeCCCC-CCCCC-CCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHH
Q psy14428 297 -----FAGMMEDIKAMP-ERSILFLQTSSH-NPTGV-DLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLR 368 (583)
Q Consensus 297 -----~~~l~~~l~~~~-~~~~~i~i~~p~-NPTG~-~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~ 368 (583)
++.+++.+++.. +++++++ ++|+ ||||. +.+++++++|.++|+++|++||+||+|.+|...+ ....+.
T Consensus 200 ~~~~~~~~le~~l~~~~~~~~~~vi-~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g---~~~~~~ 275 (449)
T 3a8u_X 200 GGIALADELLKLIELHDASNIAAVF-VEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTG---SMFGAD 275 (449)
T ss_dssp SHHHHHHHHHHHHHHHCGGGEEEEE-ECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTS---SSSHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEE-EcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCccccC---cchhhh
Confidence 888888885422 3445554 5554 67996 6689999999999999999999999998886544 111222
Q ss_pred HHHHhcCcEEEEecCcccccccC-ccceEEEEEcCCchhHHHHHHHHHHHH---------hccccCCChHHHHHHHHHhC
Q psy14428 369 YFAKEVGQLCLAQSFSKNMGLYG-ERVGTFSVLTPTSDETERIMSQLKILI---------RGFYSNPPIHGARIVTEILS 438 (583)
Q Consensus 369 ~~~~~~~~vi~i~S~SK~~~l~G-lRiG~lv~~~p~~~~~~~li~~l~~~~---------~~~~~~~s~~~q~~~~~~l~ 438 (583)
.+ +....++ ||||.++ +| +|+||+++ + +++++.+.... ....++.+.++|.++...++
T Consensus 276 ~~-~~~~di~---s~sK~l~-~G~~~~G~~~~--~-----~~~~~~l~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~ 343 (449)
T 3a8u_X 276 SF-GVTPDLM---CIAKQVT-NGAIPMGAVIA--S-----TEIYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGLAALC 343 (449)
T ss_dssp HH-TCCCSEE---EECGGGG-TTSSCCEEEEE--E-----HHHHHHHHTCSSCTTSCSSCCCCTTTTCHHHHHHHHHHHH
T ss_pred hc-CCCCCEE---EEccccc-CCCCceEEEEE--C-----HHHHHHhhccCcccccccccccCCCcccHHHHHHHHHHHH
Confidence 22 2223433 9999998 68 99999998 6 57888887641 12345678888888777765
Q ss_pred C---hhhhhhhhhHHHHHHHHHHHHhhc--cC---CCccchhhHHHHhcC
Q psy14428 439 D---PKLKAQCDETERIMSQLKILIRGF--YS---NPPIHGARIVTEILS 480 (583)
Q Consensus 439 ~---~~~~~~~~~~~~~~~~l~~~~r~~--~~---~~p~~g~~i~~~~l~ 480 (583)
. +.+.++..+ ..+.+++.++.. +. ..+..|.++|+.+..
T Consensus 344 ~~~~~~~~~~~~~---~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~ 390 (449)
T 3a8u_X 344 LLQKENLVQSVAE---VAPHFEKALHGIKGAKNVIDIRNFGLAGAIQIAP 390 (449)
T ss_dssp HHHHTTHHHHHHH---HHHHHHHHHHTTTTSTTEEEEEEETTEEEEEECC
T ss_pred HHHhcCHHHHHHH---HHHHHHHHHHHHhcCCCeEEEeeeEEEEEEEEec
Confidence 2 223333222 222222222221 11 124567788777654
|
| >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A | Back alignment and structure |
|---|
Probab=99.83 E-value=5.1e-20 Score=197.99 Aligned_cols=296 Identities=13% Similarity=0.022 Sum_probs=190.1
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
.+...+|+..+.+....|. .++.+.+++.+.+.. ...|....+..+++.++++++.+..+.. .+++|++ |+||
T Consensus 59 ~g~~ylD~~~~~~~~~lGh--~~p~v~~A~~~~~~~--~~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~~v~~--~~sG 131 (451)
T 3oks_A 59 DGNRLIDLGSGIAVTTVGN--SAPKVVEAVRSQVGD--FTHTCFMVTPYEGYVAVCEQLNRLTPVR-GDKRSAL--FNSG 131 (451)
T ss_dssp TSCEEEESSHHHHTCTTCT--TCHHHHHHHHHHHTT--CSCCTTTTSCCHHHHHHHHHHHHHSSCC-SSEEEEE--ESSH
T ss_pred CCCEEEEcCCCccccccCC--CCHHHHHHHHHHHHh--cccccCCccCCHHHHHHHHHHHHhCCcC-CCCEEEE--eCcH
Confidence 3456789988877666664 357888888777754 2346555667778888888876654321 3579999 9999
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCC--------------eEEEEecc----c----CCCCCC---
Q psy14428 241 SGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRL--------------NVGAYRYF----D----NKTNGL--- 295 (583)
Q Consensus 241 ~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~--------------~~~~v~~~----d----~~~~g~--- 295 (583)
++|++.+..++... .+++.|++.+|+|..+.......+. .+..+|+. + .+..++
T Consensus 132 seA~~~Alk~a~~~-~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 210 (451)
T 3oks_A 132 SEAVENAVKIARSH-THKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGEL 210 (451)
T ss_dssp HHHHHHHHHHHHHH-HCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHH
T ss_pred HHHHHHHHHHHHHh-cCCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccccchhhHH
Confidence 99999875443322 2358999999999877654443321 34555542 0 000111
Q ss_pred ChhhHHHHHHcC-CCCcEEEEeCCCCCCCCCC--CCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHH
Q psy14428 296 DFAGMMEDIKAM-PERSILFLQTSSHNPTGVD--LSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAK 372 (583)
Q Consensus 296 d~~~l~~~l~~~-~~~~~~i~i~~p~NPTG~~--~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~ 372 (583)
+++.+++.+++. .+.....++++|.||+|.+ .+++.+++|.++|++||++||+||+|.+|...+. .....
T Consensus 211 ~~~~~~~~l~~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~---~~~~~---- 283 (451)
T 3oks_A 211 AAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGA---MFACE---- 283 (451)
T ss_dssp HHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS---SSGGG----
T ss_pred HHHHHHHHHHhhcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCcccc---chhhh----
Confidence 244444555432 3355667777888888744 4777899999999999999999999999876541 11111
Q ss_pred hcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhC---ChhhhhhhhhH
Q psy14428 373 EVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILS---DPKLKAQCDET 449 (583)
Q Consensus 373 ~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~ 449 (583)
..+....+.||||.++ .|+|+||+++ + +++++.+........++.++++|.++...++ ++.+.++..+.
T Consensus 284 ~~~~~pdi~t~sK~l~-~G~~iG~v~~--~-----~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~ 355 (451)
T 3oks_A 284 HEGIDPDLIVTAKGIA-GGLPLSAVTG--R-----AEIMDSPHVSGLGGTYGGNPIACAAALATIETIESEGLVARAQQI 355 (451)
T ss_dssp GGTCCCSEEEECGGGG-TTSSCEEEEE--E-----HHHHTCSCTTSBCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred hcCCCCCeeeehhhhh-CCcceEEEEE--C-----HHHHhhhcCCCcCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 1122222348999998 5999999999 6 5788888766666677889999998888876 22333332222
Q ss_pred H-HHHHHHHHHHhh--ccCCCccchhhHHHHhc
Q psy14428 450 E-RIMSQLKILIRG--FYSNPPIHGARIVTEIL 479 (583)
Q Consensus 450 ~-~~~~~l~~~~r~--~~~~~p~~g~~i~~~~l 479 (583)
. .+.+.++++... .....+..|.++++.+.
T Consensus 356 ~~~l~~~L~~~~~~~~~~~~~~~~G~~~~~~~~ 388 (451)
T 3oks_A 356 EKIMKDRLGRLQAEDDRIGDVRGRGAMIAMELV 388 (451)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEB
T ss_pred HHHHHHHHHHHHhhCCCeEEEEEeeEEEEEEEe
Confidence 2 233333333222 22344556777777664
|
| >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.8e-19 Score=188.94 Aligned_cols=227 Identities=13% Similarity=0.093 Sum_probs=154.9
Q ss_pred cCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCC--CCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHH
Q psy14428 168 LGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYA--NIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLR 245 (583)
Q Consensus 168 l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~--~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~ 245 (583)
.+.+.|+.. .+.+..+.+.++..........+.|. +.....+|++.++++++. ++.|++ ++| ++|+.
T Consensus 26 ~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~la~~~g~-------~~~i~~--~sG-~~a~~ 94 (398)
T 1gc0_A 26 GALVPPVYQ-TATFTFPTVEYGAACFAGEQAGHFYSRISNPTLNLLEARMASLEGG-------EAGLAL--ASG-MGAIT 94 (398)
T ss_dssp TBSSCCBCC-CSCBCCC---------------------CCHHHHHHHHHHHHHHTC-------SEEEEE--SSH-HHHHH
T ss_pred CCcCCCccC-CCccccCCHHHHHHhhcCCcCCCcccCCCChHHHHHHHHHHHHhCC-------CcEEEE--CCH-HHHHH
Confidence 345555433 22334555555543211111123343 556678999999999853 134444 554 79998
Q ss_pred HHHHHHHHhCCCCCEEEEcCCCChhhHHHH----hhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCC
Q psy14428 246 VGTAFLERFYPGVKTVYFPTPTWNGHVRFC----TDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHN 321 (583)
Q Consensus 246 l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~----~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~N 321 (583)
++ +..+..+||+|++++|+|..+...+ +..|++++.++. + |++.+++.+ .++++++++++|+|
T Consensus 95 ~~---l~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~------d~~~l~~~i---~~~~~~v~~~~~~n 161 (398)
T 1gc0_A 95 ST---LWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDM-A------DLQALEAAM---TPATRVIYFESPAN 161 (398)
T ss_dssp HH---HHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECT-T------CHHHHHHHC---CTTEEEEEEESSCT
T ss_pred HH---HHHHhcCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECC-C------CHHHHHHhc---CCCCeEEEEECCCC
Confidence 85 4445667999999999999887766 677999988876 1 788888877 56789999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccc-eEEEEE
Q psy14428 322 PTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERV-GTFSVL 400 (583)
Q Consensus 322 PTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRi-G~lv~~ 400 (583)
|||.+++ +++|.++|+++|+++|+||+|..+.+.. ++ ..+..+++.|+||.++.+|.|+ ||+++
T Consensus 162 ptG~~~~---l~~i~~l~~~~~~~li~D~~~~~~~~~~------~~-----~~~~d~~~~S~sK~~~~~~~~~~G~l~~- 226 (398)
T 1gc0_A 162 PNMHMAD---IAGVAKIARKHGATVVVDNTYCTPYLQR------PL-----ELGADLVVHSATKYLSGHGDITAGIVVG- 226 (398)
T ss_dssp TTCCCCC---HHHHHHHHGGGTCEEEEECTTTHHHHCC------GG-----GGTCSEEEEETTTTTTCSSSCCCEEEEE-
T ss_pred CCccccc---HHHHHHHHHHcCCEEEEECCCcccccCC------ch-----hhCceEEEECCccccCCCCCCeEEEEEE-
Confidence 9999996 7788999999999999999998665432 11 1356799999999999999998 99998
Q ss_pred cCCchhHHHHHH-HHHHHHhc-cccCCChHHHHHHHHHhCC
Q psy14428 401 TPTSDETERIMS-QLKILIRG-FYSNPPIHGARIVTEILSD 439 (583)
Q Consensus 401 ~p~~~~~~~li~-~l~~~~~~-~~~~~s~~~q~~~~~~l~~ 439 (583)
+ +++++ .+...... ...+.+.+.++++...++.
T Consensus 227 -~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 261 (398)
T 1gc0_A 227 -S-----QALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKT 261 (398)
T ss_dssp -C-----HHHHHHHHHTHHHHHTCCCCCHHHHHHHHHHHTT
T ss_pred -C-----hHHHHHHHHHHhhccCCCCCCHHHHHHHHhccch
Confidence 6 35555 55554443 3456788888888777764
|
| >4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=5.4e-20 Score=191.90 Aligned_cols=186 Identities=11% Similarity=0.053 Sum_probs=136.9
Q ss_pred CChHHHHHHHHHhccCC---CCCCCC----CCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHh
Q psy14428 182 VLPSVKEAERRIYEKNL---DHEYAN----IGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERF 254 (583)
Q Consensus 182 ~~~~v~~a~~~~~~~~~---~~~Y~~----~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~ 254 (583)
+++.+.+++.+.+.+.. ...|.. .....+++++++++++ +++++|++ |+|+++++.++.. .+
T Consensus 12 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~------~~~~~i~~--~~g~~~a~~~~~~---~~ 80 (382)
T 4hvk_A 12 VDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVN------GGGGTVVF--TSGATEANNLAII---GY 80 (382)
T ss_dssp CCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHTT------CTTEEEEE--ESSHHHHHHHHHH---HH
T ss_pred CCHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHcC------CCcCeEEE--ECCchHHHHHHHH---Hh
Confidence 56788888777765410 011211 1123367777777664 35788999 9999999998633 33
Q ss_pred C----CCCCEEEEcCCCChhhHHHHhh---cCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCC
Q psy14428 255 Y----PGVKTVYFPTPTWNGHVRFCTD---SRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDL 327 (583)
Q Consensus 255 ~----~~gd~Vlv~~P~y~~~~~~~~~---~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~ 327 (583)
. ++||+|++++|+|+.+...+.. .|++++.+|+ ++ ++.+|++.+++.+ .++++++++++||||||.++
T Consensus 81 ~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~-~~-~~~~d~~~l~~~i---~~~~~~v~~~~~~nptG~~~ 155 (382)
T 4hvk_A 81 AMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPV-GK-YGEVDVSFIDQKL---RDDTILVSVQHANNEIGTIQ 155 (382)
T ss_dssp HHHHGGGCCEEEEETTCCHHHHHHHHHHHHTTCEEEEECB-CT-TSCBCHHHHHHHC---CTTEEEEECCSBCTTTCBBC
T ss_pred hhhhcCCCCEEEECCCCcHHHHHHHHHHHhcCCEEEEecc-CC-CCCcCHHHHHHHh---ccCceEEEEECCCCCceeeC
Confidence 3 5699999999999988776554 5999999998 54 4678999999887 56789999999999999999
Q ss_pred CHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEE
Q psy14428 328 SEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSV 399 (583)
Q Consensus 328 s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~ 399 (583)
+ +++|+++|+++|+ ||+|++|..-... ..+. ..+..+++.|+||.+|.+| +|++++
T Consensus 156 ~---~~~i~~l~~~~~~-li~D~a~~~~~~~------~~~~----~~~~d~~~~s~~K~~g~~g--~g~~~~ 211 (382)
T 4hvk_A 156 P---VEEISEVLAGKAA-LHIDATASVGQIE------VDVE----KIGADMLTISSNDIYGPKG--VGALWI 211 (382)
T ss_dssp C---HHHHHHHHSSSSE-EEEECTTTBTTBC------CCHH----HHTCSEEEEESGGGTSCTT--CEEEEE
T ss_pred C---HHHHHHHHHHcCE-EEEEhHHhcCCCC------CCch----hcCCCEEEEeHHHhcCCCc--eEEEEE
Confidence 8 4577888999999 9999998642221 1121 1245689999999887666 788887
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=5e-20 Score=201.32 Aligned_cols=255 Identities=11% Similarity=0.005 Sum_probs=178.7
Q ss_pred hHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCe--EEEecCCchhHHHHHHHHHHHhCCCC---
Q psy14428 184 PSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRL--AIVQGISGSGSLRVGTAFLERFYPGV--- 258 (583)
Q Consensus 184 ~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I--~i~~t~G~~~al~l~~~~l~~~~~~g--- 258 (583)
+.+.+++......+ ...|....+..++++++++++.+..|.+.+++++ ++ |+|+++|+.++...+ ..+|
T Consensus 114 ~~~~~~~~~~~~~~-~~~~~~~p~~~~le~~l~~~la~~~g~~~~~~~v~~~~--t~ggt~a~~~al~a~---~~~g~~~ 187 (514)
T 3mad_A 114 AFLNEVYALQSQSN-PLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTV--TSGGTESLLLAMKTY---RDWARAT 187 (514)
T ss_dssp HHHHHHHHHHTTCC-TTCTTTCHHHHHHHHHHHHHHHHHTTGGGGTSCCEEEE--ESSHHHHHHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHhhcC-CcccccChHHHHHHHHHHHHHHHHcCCCCccCCcceEE--cCcHHHHHHHHHHHH---HHHhhhh
Confidence 34555554443322 4456666778889999989988888887777888 88 999999999864433 2234
Q ss_pred -----CEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHH
Q psy14428 259 -----KTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWR 333 (583)
Q Consensus 259 -----d~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~ 333 (583)
|+|+++.|+|..+...++..|++++.+|+ ++ ++.+|++.+++++ .++++++++++||||||.+.+ ++
T Consensus 188 ~g~~~d~Vi~~~~~~~~~~~~~~~~G~~v~~v~~-~~-~~~~d~~~Le~~i---~~~~~~v~~~~~~nptG~~~~---l~ 259 (514)
T 3mad_A 188 KGITAPEAVVPVSAHAAFDKAAQYFGIKLVRTPL-DA-DYRADVAAMREAI---TPNTVVVAGSAPGYPHGVVDP---IP 259 (514)
T ss_dssp HCCSSCEEEEETTSCTHHHHHHHHHTCEEEEECB-CT-TSCBCHHHHHHHC---CTTEEEEEEETTCTTTCCCCC---HH
T ss_pred cCCCCCeEEEeCccchHHHHHHHHcCCeeEEeee-CC-CCCCCHHHHHHHh---ccCCEEEEEeCCCCCCccccC---HH
Confidence 89999999999999999999999999999 55 5789999999988 567899999999999999988 56
Q ss_pred HHHHHHHhcCeEEEEeccCCCCCCCC---CCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHH
Q psy14428 334 QLAVVVKQRHLYPFFDMAYLGLTSGD---FDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERI 410 (583)
Q Consensus 334 ~l~~~a~~~~i~iI~De~Y~~l~~~~---~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~l 410 (583)
+|.++|+++|++||+||+|.++.+.. ...+.+++. ....+..+++.|++|.++ .|.++|++++ ++ +.
T Consensus 260 ~i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~~~~--~~~~g~d~~~~s~~K~l~-~~~~~g~~~~--~~-----~~ 329 (514)
T 3mad_A 260 EIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFD--FRLEGVTSVSADTHKYGY-GAKGTSVILY--RR-----PD 329 (514)
T ss_dssp HHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCCCS--TTSTTCCEEEECTTTTTC-CCSSCEEEEE--SS-----HH
T ss_pred HHHHHHHHhCCeEEEecccccccchhHHhcCCCCCccc--ccCCCCcEEEECchhccC-CCCCeEEEEE--eC-----HH
Confidence 78888999999999999999886410 000000010 012245688899999875 7899999999 64 22
Q ss_pred HHHHHHHHhcc-----------ccCC---ChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhh
Q psy14428 411 MSQLKILIRGF-----------YSNP---PIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRG 462 (583)
Q Consensus 411 i~~l~~~~~~~-----------~~~~---s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~ 462 (583)
+.......... ..+. +.+.++++...+....+++..++.++..+.+.+.++.
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~ 395 (514)
T 3mad_A 330 LLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRA 395 (514)
T ss_dssp HHTTTCEEESSCTTCSEEESSSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhccccccccccCCCcccCCccCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 22211110000 0011 2345666666676666666666666655555555543
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.83 E-value=8.3e-20 Score=196.25 Aligned_cols=293 Identities=11% Similarity=0.011 Sum_probs=182.9
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
.+...+|+..+.+....|. .++.+.+++.+.++.. .+.+..+..++++++++++.+..+. ..+ |++ |+||
T Consensus 47 ~g~~~lD~~~~~~~~~lG~--~~p~v~~A~~~~~~~~---~~~~~~~~~~~~~~la~~l~~~~~~--~~~-v~~--~~gg 116 (452)
T 3n5m_A 47 QGKRYLDGMSGLWCVNSGY--GRKELAEAAYKQLQTL---SYFPMSQSHEPAIKLAEKLNEWLGG--EYV-IFF--SNSG 116 (452)
T ss_dssp TCCEEEETTHHHHTCTTCB--CCHHHHHHHHHHHTTC---CCCCTTSEEHHHHHHHHHHHHHHTS--CEE-EEE--ESSH
T ss_pred CCCEEEECCcchhhccCCC--CCHHHHHHHHHHHHhc---CCcccccCCHHHHHHHHHHHHhCCC--Cce-EEE--eCch
Confidence 3456799998877666664 3578888888777542 1123334455566666655544332 234 999 9999
Q ss_pred hhHHHHHHHHHHHh---C--CCCCEEEEcCCCChhhHHHHhhcCCe-------------EEEEecccCCCCCC-C-----
Q psy14428 241 SGSLRVGTAFLERF---Y--PGVKTVYFPTPTWNGHVRFCTDSRLN-------------VGAYRYFDNKTNGL-D----- 296 (583)
Q Consensus 241 ~~al~l~~~~l~~~---~--~~gd~Vlv~~P~y~~~~~~~~~~G~~-------------~~~v~~~d~~~~g~-d----- 296 (583)
++|+..+..++... . +++|.|++.+|+|..+.......+.. +..++..+...... |
T Consensus 117 seA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (452)
T 3n5m_A 117 SEANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIY 196 (452)
T ss_dssp HHHHHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGG
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCccccCccCCchhhH
Confidence 99999975444321 2 15899999999998876554444322 33333211000001 1
Q ss_pred ----hhhHHHHHH-cCCCCcEEEEeCCC-CCCCCCCC-CHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHH
Q psy14428 297 ----FAGMMEDIK-AMPERSILFLQTSS-HNPTGVDL-SEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRY 369 (583)
Q Consensus 297 ----~~~l~~~l~-~~~~~~~~i~i~~p-~NPTG~~~-s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~ 369 (583)
++.+++.+. ...+++++++++.+ || ||.++ +++.+++|.++|++||+++|+||+|.+|...+. ....
T Consensus 197 ~~~~~~~le~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~---~~~~-- 270 (452)
T 3n5m_A 197 DVECVKEVDRVMTWELSETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRTGK---AFGF-- 270 (452)
T ss_dssp GCHHHHHHHHHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSGG--
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCcccc---cchh--
Confidence 788888885 22345677777777 89 99766 888999999999999999999999999876541 1111
Q ss_pred HHHhcCcEEEEecCcccccccC-ccceEEEEEcCCchhHHHHHHHHHH---H---HhccccCCChHHHHHHHHHhCC---
Q psy14428 370 FAKEVGQLCLAQSFSKNMGLYG-ERVGTFSVLTPTSDETERIMSQLKI---L---IRGFYSNPPIHGARIVTEILSD--- 439 (583)
Q Consensus 370 ~~~~~~~vi~i~S~SK~~~l~G-lRiG~lv~~~p~~~~~~~li~~l~~---~---~~~~~~~~s~~~q~~~~~~l~~--- 439 (583)
+..+....+.+|||.++. | +|+||+++ + +++++.+.. . .....++.++++|.++...++.
T Consensus 271 --~~~~~~~di~t~sK~l~~-G~~~ig~~~~--~-----~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~ 340 (452)
T 3n5m_A 271 --MNYDVKPDIITMAKGITS-AYLPLSATAV--K-----REIYEAFKGKGEYEFFRHINTFGGNPAACALALKNLEIIEN 340 (452)
T ss_dssp --GGTTCCCSEEEECGGGGT-TSSCCEEEEE--E-----HHHHGGGCSSSTTCSCCCCCSSTTCHHHHHHHHHHHHHHHH
T ss_pred --hhcCCCCCEEeecccccC-CCcceEEEEE--C-----HHHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHHHHHHh
Confidence 112222234479999985 9 99999999 6 578887743 1 1234567899999998887762
Q ss_pred hhhhhhhhhHH-HHHHHHHHHHhh--ccCCCccchhhHHHHhc
Q psy14428 440 PKLKAQCDETE-RIMSQLKILIRG--FYSNPPIHGARIVTEIL 479 (583)
Q Consensus 440 ~~~~~~~~~~~-~~~~~l~~~~r~--~~~~~p~~g~~i~~~~l 479 (583)
+.+.++..+.. ...+.++.+... .....+..|.++++.+.
T Consensus 341 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~ 383 (452)
T 3n5m_A 341 ENLIERSAQMGSLLLEQLKEEIGEHPLVGDIRGKGLLVGIELV 383 (452)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSSCEEEEEE
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEEEEe
Confidence 22222222222 222333333221 12234566777776553
|
| >1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.3e-19 Score=186.28 Aligned_cols=185 Identities=11% Similarity=0.049 Sum_probs=145.7
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHH----hhcCCeEEEE
Q psy14428 210 KFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFC----TDSRLNVGAY 285 (583)
Q Consensus 210 ~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~----~~~G~~~~~v 285 (583)
+||+++|++++. ++.|++ ++| ++|+.++ +..+..+||+|++++|+|..+...+ +..|++++.+
T Consensus 2 ~l~~~la~~~g~-------~~~i~~--~sG-~~a~~~~---~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 68 (331)
T 1pff_A 2 ALEGKIAKLEHA-------EACAAT--ASG-MGAIAAS---VWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFI 68 (331)
T ss_dssp HHHHHHHHHHTC-------SEEEEE--SSH-HHHHHHH---HHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEE
T ss_pred hHHHHHHHHhCC-------CeEEEe--CCh-HHHHHHH---HHHhcCCCCEEEEcCCCcchHHHHHHHHHHhcCCEEEEe
Confidence 689999999863 255665 666 8999885 4445667999999999999987765 4479999888
Q ss_pred ecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHh-cCeEEEEeccCCCCCCCCCCCch
Q psy14428 286 RYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQ-RHLYPFFDMAYLGLTSGDFDKDA 364 (583)
Q Consensus 286 ~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~-~~i~iI~De~Y~~l~~~~~~~~~ 364 (583)
+. .|++.+++.+ .++++++++++||||||.+++ +++|.++|++ +|+++|+||+|....+..
T Consensus 69 ~~-------~d~~~l~~~i---~~~~~~v~~~~~~nptG~~~~---~~~i~~~~~~~~~~~li~D~a~~~~~~~~----- 130 (331)
T 1pff_A 69 DM-------AVPGNIEKHL---KPNTRIVYFETPANPTLKVID---IEDAVKQARKQKDILVIVDNTFASPILTN----- 130 (331)
T ss_dssp CT-------TSTTHHHHTC---CTTEEEEEEESSCTTTCCCCC---HHHHHHHHTTSSSCEEEEECTTTHHHHCC-----
T ss_pred CC-------CCHHHHHHhh---cCCCeEEEEECCCCCcCcccC---HHHHHHHHhhhcCCEEEEECCCcccccCC-----
Confidence 76 1667777766 567899999999999999997 7788999999 999999999998654321
Q ss_pred HHHHHHHHhcCcEEEEecCcccccccCcc-ceEEEEEcCCchhHH-HHHHHHHHHHhc-cccCCChHHHHHHHHHhC
Q psy14428 365 FSLRYFAKEVGQLCLAQSFSKNMGLYGER-VGTFSVLTPTSDETE-RIMSQLKILIRG-FYSNPPIHGARIVTEILS 438 (583)
Q Consensus 365 ~~~~~~~~~~~~vi~i~S~SK~~~l~GlR-iG~lv~~~p~~~~~~-~li~~l~~~~~~-~~~~~s~~~q~~~~~~l~ 438 (583)
++ ..+..+++.|+||.++.||.| +||+++ + + ++++++...... ...+.+.+.|.++...++
T Consensus 131 -~~-----~~~~d~~~~s~~K~~~~~~~r~~G~~~~--~-----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 194 (331)
T 1pff_A 131 -PL-----DLGVDIVVHSATKYINGHTDVVAGLVCS--R-----ADIIAKVKSQGIKDITGAIISPHDAWLITRGTL 194 (331)
T ss_dssp -GG-----GGTCSEEEEETTTTTSSSSSCCCEEEEE--C-----HHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHH
T ss_pred -hh-----hcCCcEEEEECccccCCCCCceEEEEEe--C-----cHHHHHHHHHHHHhhcCCCCCHHHHHHHHcCcc
Confidence 11 235789999999999999999 799999 6 4 788888876655 455778888887666554
|
| >1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.83 E-value=8.9e-20 Score=192.53 Aligned_cols=191 Identities=16% Similarity=0.143 Sum_probs=146.4
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHH----HHhhcC
Q psy14428 204 NIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVR----FCTDSR 279 (583)
Q Consensus 204 ~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~----~~~~~G 279 (583)
+..+..+||+++|++++.. +.|++ ++ |++|+.++ +. +..+||+|++++|+|..... .++..|
T Consensus 53 ~~~~~~~lr~~la~~~g~~-------~~i~~--~s-Gt~a~~~a---l~-~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~G 118 (393)
T 1n8p_A 53 QNPNRENLERAVAALENAQ-------YGLAF--SS-GSATTATI---LQ-SLPQGSHAVSIGDVYGGTHRYFTKVANAHG 118 (393)
T ss_dssp CCHHHHHHHHHHHHHTTCS-------EEEEE--SC-HHHHHHHH---HH-TSCSSCEEEEESSCCHHHHHHHHHTSTTTC
T ss_pred CChhHHHHHHHHHHHhCCC-------cEEEE--CC-hHHHHHHH---HH-HcCCCCEEEEeCCCchHHHHHHHHHHHHcC
Confidence 3456789999999998531 34444 55 48999985 44 66779999999999985544 456679
Q ss_pred CeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhc----CeEEEEeccCCCC
Q psy14428 280 LNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQR----HLYPFFDMAYLGL 355 (583)
Q Consensus 280 ~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~----~i~iI~De~Y~~l 355 (583)
++++.+|+ + | +.+++.+ .++++++++++||||||.+++ +++|.++|+++ |+++|+||+|..+
T Consensus 119 ~~v~~v~~-~------d-~~l~~~i---~~~t~lv~~~~~~nptG~~~~---l~~i~~la~~~~~~~~~~livD~a~~~~ 184 (393)
T 1n8p_A 119 VETSFTND-L------L-NDLPQLI---KENTKLVWIETPTNPTLKVTD---IQKVADLIKKHAAGQDVILVVDNTFLSP 184 (393)
T ss_dssp SCCEEESS-H------H-HHHHHHS---CSSEEEEEECSSCTTTCCCCC---HHHHHHHHHHHTTTTTCEEEEECTTTHH
T ss_pred cEEEEeCC-C------h-HHHHHhc---ccCceEEEEECCCCCcceecC---HHHHHHHHHHhCCCCCCEEEEeCCcccc
Confidence 99998887 2 5 6777766 567899999999999999997 67778889999 9999999999877
Q ss_pred CCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccc-eEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHH
Q psy14428 356 TSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERV-GTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVT 434 (583)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRi-G~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~ 434 (583)
.+.. + . ..+..+++.|+||.+|.+|+|+ ||+++ .+ +++++.+...........+...+.++.
T Consensus 185 ~~~~----~------~-~~~~di~~~S~sK~~g~~G~rigG~~~~--~~----~~~~~~l~~~~~~~g~~~~~~~~~~~~ 247 (393)
T 1n8p_A 185 YISN----P------L-NFGADIVVHSATKYINGHSDVVLGVLAT--NN----KPLYERLQFLQNAIGAIPSPFDAWLTH 247 (393)
T ss_dssp HHCC----G------G-GGTCSEEEEETTTTTTCSSCCCCEEEEE--SC----HHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_pred ccCC----H------H-HcCCeEEEEECcccccCCCCceeEEEEe--CC----HHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 6532 1 1 1256799999999999999999 99988 54 368888877655445556777777666
Q ss_pred HHhCC
Q psy14428 435 EILSD 439 (583)
Q Consensus 435 ~~l~~ 439 (583)
..++.
T Consensus 248 ~~l~~ 252 (393)
T 1n8p_A 248 RGLKT 252 (393)
T ss_dssp HHHTT
T ss_pred hccch
Confidence 66654
|
| >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.4e-19 Score=193.17 Aligned_cols=287 Identities=15% Similarity=0.055 Sum_probs=181.0
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
.+...+|+..+.+....|. .++.+.+++.+.+..... .|.+.....+|++++++++. .+++|++ |+||
T Consensus 51 ~g~~ylD~~~~~~~~~lG~--~~p~v~~A~~~~~~~~~~-~~~~~~~~~~l~~~la~~~~-------~~~~v~~--~~~G 118 (429)
T 3k28_A 51 DGNEYIDYVLSWGPLIHGH--ANDRVVEALKAVAERGTS-FGAPTEIENKLAKLVIERVP-------SIEIVRM--VNSG 118 (429)
T ss_dssp TCCEEEESCGGGTTCTTCB--SCHHHHHHHHHHHHHCSC-CSSCCHHHHHHHHHHHHHST-------TCSEEEE--ESSH
T ss_pred CCCEEEECCCChhhcccCC--CCHHHHHHHHHHHhhCcC-cCCCCHHHHHHHHHHHHhCC-------CCCEEEE--eCCh
Confidence 4567899998887666664 357888888777655322 34466677889999988763 3589999 9999
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhh-cCCeEEEEecccCCCCCC--------------ChhhHHHHHH
Q psy14428 241 SGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTD-SRLNVGAYRYFDNKTNGL--------------DFAGMMEDIK 305 (583)
Q Consensus 241 ~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~-~G~~~~~v~~~d~~~~g~--------------d~~~l~~~l~ 305 (583)
++|+..+..++... .+++.|++.+|+|..+...... .|..+..++. ... .++ |++.+++.++
T Consensus 119 sea~~~ai~~a~~~-~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~d~~~le~~l~ 195 (429)
T 3k28_A 119 TEATMSALRLARGY-TGRNKILKFIGCYHGHGDSLLIKAGSGVATLGL-PDS-PGVPEGVAKNTITVAYNDLESVKYAFE 195 (429)
T ss_dssp HHHHHHHHHHHHHH-HTCCEEEEEETCCCCSCGGGCSSCCTTC------CCC-TTCCHHHHTTEEEEETTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-hCCCEEEEECCCcCCCcHHHHHhcCCcccccCC-CCc-CCCCCcccCceeecCCCCHHHHHHHHH
Confidence 99999875443322 2378999999999765433222 2221111111 000 111 7888888886
Q ss_pred cCCCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCc
Q psy14428 306 AMPERSILFLQTSSHNPTGVD-LSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFS 384 (583)
Q Consensus 306 ~~~~~~~~i~i~~p~NPTG~~-~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~S 384 (583)
+..+++.++++..++|++|.+ .+++.+++|.++|++||+++|+||+|.+| ..+ ....... .+ ....+.|||
T Consensus 196 ~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g---~~~~~~~-~~---~~~di~t~s 267 (429)
T 3k28_A 196 QFGDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGF-RVA---YNCGQGY-YG---VTPDLTCLG 267 (429)
T ss_dssp HHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTT-TSS---TTHHHHH-HT---CCCSEEEEC
T ss_pred hCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccccc-ccC---cchHHHH-hC---CCCceehhh
Confidence 433345555544444445544 46888999999999999999999999998 543 1222222 12 222345899
Q ss_pred ccccccCccceEEEEEcCCchhHHHHHHHHHHHH---hccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHH----HHH
Q psy14428 385 KNMGLYGERVGTFSVLTPTSDETERIMSQLKILI---RGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMS----QLK 457 (583)
Q Consensus 385 K~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~---~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~----~l~ 457 (583)
|.++ .|+|+||+++ + +++++.+.... ....++.++++|.++...++... ++.+++.++..+ .++
T Consensus 268 K~~~-~G~~iG~~~~--~-----~~~~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~-~~~~~~~~~~~~~l~~~L~ 338 (429)
T 3k28_A 268 KVIG-GGLPVGAYGG--K-----AEIMRQVAPSGPIYQAGTLSGNPLAMAAGYETLVQLT-PESYVEFERKAEMLEAGLR 338 (429)
T ss_dssp GGGG-TTSCCEEEEE--C-----HHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHHHHH
T ss_pred hhhc-CCCCeEEEEE--c-----HHHHhhhccCCCccccCCCCCChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 9998 6999999999 6 57888776532 22346788999999988887432 333333333322 333
Q ss_pred HHHh--hccCCCccchhhHHHHhc
Q psy14428 458 ILIR--GFYSNPPIHGARIVTEIL 479 (583)
Q Consensus 458 ~~~r--~~~~~~p~~g~~i~~~~l 479 (583)
++.. ......+..|.++++.+.
T Consensus 339 ~~~~~~~~~~~~~~~g~~~~~~~~ 362 (429)
T 3k28_A 339 KAAEKHGIPHHINRAGSMIGIFFT 362 (429)
T ss_dssp HHHHHTTCCCEEEEETTEEEEESS
T ss_pred HHHhhCCCCEEEEeeccEEEEEEe
Confidence 3221 122244556777766553
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=4.2e-20 Score=198.37 Aligned_cols=295 Identities=10% Similarity=0.003 Sum_probs=178.4
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
.+...+|+..+.+....|. .++.+.+++.+.++.. ..|.+..+..++++++++++.+..+ ...++|++ |+||
T Consensus 42 ~g~~ylD~~~~~~~~~lG~--~~p~v~~A~~~~~~~~--~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~--~~sG 113 (448)
T 3dod_A 42 NGKEYYDGFSSVWLNVHGH--RKKELDDAIKKQLGKI--AHSTLLGMTNVPATQLAETLIDISP--KKLTRVFY--SDSG 113 (448)
T ss_dssp TSCEEEETTHHHHTCSSCB--SCHHHHHHHHHHHTTC--SCCCCSSSEEHHHHHHHHHHHHHSC--TTEEEEEE--ESSH
T ss_pred CCCEEEECCcchhhccCCC--CCHHHHHHHHHHHHhc--cCccccccCCHHHHHHHHHHHHhCC--CCCCEEEE--eCch
Confidence 3456789988877666664 3578888888777542 2344556667788888888876543 34579999 9999
Q ss_pred hhHHHHHHHHHHHh-C-CC---CCEEEEcCCCChhhHHHHhhcCC-------------eEEEEecccCCCCCC-------
Q psy14428 241 SGSLRVGTAFLERF-Y-PG---VKTVYFPTPTWNGHVRFCTDSRL-------------NVGAYRYFDNKTNGL------- 295 (583)
Q Consensus 241 ~~al~l~~~~l~~~-~-~~---gd~Vlv~~P~y~~~~~~~~~~G~-------------~~~~v~~~d~~~~g~------- 295 (583)
++|+..+..++... . .. +|.|++++|+|..+.......+. .+..+|.. +.+..
T Consensus 114 seA~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 191 (448)
T 3dod_A 114 AEAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIP--YVYRSESGDPDE 191 (448)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTCCEEEEEC-----------------------------CEEECCC--CCTTSSSCCHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCccccccccCCCCCceEeCCC--ccccCCccchhh
Confidence 99999975444321 0 21 49999999999877544333322 22334431 11111
Q ss_pred ----ChhhHHHHHHcCCCCcEEEEeCCCC-CCCC-CCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHH
Q psy14428 296 ----DFAGMMEDIKAMPERSILFLQTSSH-NPTG-VDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRY 369 (583)
Q Consensus 296 ----d~~~l~~~l~~~~~~~~~i~i~~p~-NPTG-~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~ 369 (583)
|++.+++.++...++++++++...+ ||+| .+++++.+++|.++|++||++||+||+|.+|...+. .. ..
T Consensus 192 ~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~--~~-a~-- 266 (448)
T 3dod_A 192 CRDQCLRELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGK--MF-AC-- 266 (448)
T ss_dssp HHHHHHHHHHHHHHHHGGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS--SS-GG--
T ss_pred hhHHHHHHHHHHHHhCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEeccccCCCcccc--hh-hh--
Confidence 3677888875323445555555555 7777 556888899999999999999999999999876541 11 11
Q ss_pred HHHhcCcEEEEecCcccccccC-ccceEEEEEcCCchhHHHHHHHHHH-------HHhccccCCChHHHHHHHHHhCChh
Q psy14428 370 FAKEVGQLCLAQSFSKNMGLYG-ERVGTFSVLTPTSDETERIMSQLKI-------LIRGFYSNPPIHGARIVTEILSDPK 441 (583)
Q Consensus 370 ~~~~~~~vi~i~S~SK~~~l~G-lRiG~lv~~~p~~~~~~~li~~l~~-------~~~~~~~~~s~~~q~~~~~~l~~~~ 441 (583)
+..+....+.+|||.++ .| +|+||+++ + +++++.+.+ ......++.++++|.++...++.-.
T Consensus 267 --~~~~~~~di~t~sK~l~-~G~~~ig~v~~--~-----~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~ 336 (448)
T 3dod_A 267 --EHENVQPDLMAAGKGIT-GGYLPIAVTFA--T-----EDIYKAFYDDYENLKTFFHGHSYTGNQLGCAVALENLALFE 336 (448)
T ss_dssp --GGGTCCCSEEEECGGGG-TTSSCCEEEEE--E-----HHHHHTTCSCGGGCCCCCCCCTTTTCHHHHHHHHHHHHHHH
T ss_pred --hhcCCCCCEEEeccccc-CCcCceEEEEE--C-----HHHHHHhhhccccCCcccccCCCCcCHHHHHHHHHHHHHHh
Confidence 11122222447899998 59 59999999 6 578888765 3344566788999999888876311
Q ss_pred hhhhhhhHHHHHHHHHHHHhh-----ccCCCccchhhHHHHhcC
Q psy14428 442 LKAQCDETERIMSQLKILIRG-----FYSNPPIHGARIVTEILS 480 (583)
Q Consensus 442 ~~~~~~~~~~~~~~l~~~~r~-----~~~~~p~~g~~i~~~~l~ 480 (583)
-+..+++.++..+.+++.++. .....+..|.++++.+..
T Consensus 337 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~g~~~~~~~~~ 380 (448)
T 3dod_A 337 SENIVEQVAEKSKKLHFLLQDLHALPHVGDIRQLGFMCGAELVR 380 (448)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEETTEEEEEECS
T ss_pred cccHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeeEEEEEEEcc
Confidence 122222333333333322222 112334467777766654
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.83 E-value=6.8e-20 Score=199.36 Aligned_cols=259 Identities=11% Similarity=0.067 Sum_probs=181.7
Q ss_pred hHHHHHHHHHhcc---CCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHh--CCCC
Q psy14428 184 PSVKEAERRIYEK---NLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERF--YPGV 258 (583)
Q Consensus 184 ~~v~~a~~~~~~~---~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~--~~~g 258 (583)
+.+.+++.+.... ....+|....|..++++.+++++.+.+|.+.+++++++ |+|+++|+.++...+... ..+|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~--~~ggt~a~~~a~~a~~~~~~~~~g 155 (497)
T 3mc6_A 78 DDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTT--TSGGTESLLLACLSAKMYALHHRG 155 (497)
T ss_dssp HHHHHHHHHHHHHTSSCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEE--ESSHHHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHhhcCCCCcccChHHHHHHHHHHHHHHHHhCCCCCCCeEEE--cCcHHHHHHHHHHHHHHHHHhcCC
Confidence 5566665555543 12455777788899999999999888888777889999 999999999874433221 0124
Q ss_pred ---CEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHH
Q psy14428 259 ---KTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQL 335 (583)
Q Consensus 259 ---d~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l 335 (583)
|+|+++.|+|..+...++..|++++.+|+ +++++.+|++.+++.+ .++++++++++|+||||.+.+ +++|
T Consensus 156 ~~~~~Vi~~~~~h~~~~~~~~~~G~~~~~v~~-~~~~~~~d~~~l~~~i---~~~~~~v~~~~p~nptG~~~~---l~~i 228 (497)
T 3mc6_A 156 ITEPEIIAPVTAHAGFDKAAYYFGMKLRHVEL-DPTTYQVDLGKVKKFI---NKNTVLLVGSAPNFPHGIADD---IEGL 228 (497)
T ss_dssp CSSCEEEEETTSCHHHHHHHHHSCCEEEEECB-CTTTCSBCTTTTGGGC---CSSEEEEEEETTCTTTCCCCS---CTTT
T ss_pred CCCceEEEeCCccHHHHHHHHHcCCeEEEEec-CcccCcCCHHHHHHHH---hhCCEEEEEECCCCCCCcCCC---HHHH
Confidence 89999999999999999999999999998 5545789999998877 567899999999999999977 5577
Q ss_pred HHHHHhcCeEEEEeccCCCCCCC-----CCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHH
Q psy14428 336 AVVVKQRHLYPFFDMAYLGLTSG-----DFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERI 410 (583)
Q Consensus 336 ~~~a~~~~i~iI~De~Y~~l~~~-----~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~l 410 (583)
.++|+++|+++|+|++|..+... +. ...+++. ....+-.+++.|++|.++ .|.++||+++ ++ +.
T Consensus 229 ~~la~~~g~~livD~a~~~~~~~f~~~~~~-~~~~~~~--~~~~g~d~~~~s~~K~l~-~~~~~g~~~~--~~-----~~ 297 (497)
T 3mc6_A 229 GKIAQKYKLPLHVDSCLGSFIVSFMEKAGY-KNLPLLD--FRVPGVTSISCDTHKYGF-APKGSSVIMY--RN-----SD 297 (497)
T ss_dssp TTHHHHTTCCEEEETTTTHHHHGGGTTTTC-CSCCCCS--TTSTTCCEEEEETTTTTC-CCSSCEEEEC--SS-----HH
T ss_pred HHHHHHhCCEEEEECcchhhhhhhhhhhcc-cCCcccc--ccCCCCcEEEECchhhcC-CCCCceeEEe--cC-----HH
Confidence 88899999999999999854211 00 0000010 012234578889999874 8899999998 64 33
Q ss_pred HHHHHHHHhccccCC-----C---------hHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhh
Q psy14428 411 MSQLKILIRGFYSNP-----P---------IHGARIVTEILSDPKLKAQCDETERIMSQLKILIRG 462 (583)
Q Consensus 411 i~~l~~~~~~~~~~~-----s---------~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~ 462 (583)
+..........+.+. + .++++++...+.+..+++..++..+....+.+.++.
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~ 363 (497)
T 3mc6_A 298 LRMHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQE 363 (497)
T ss_dssp HHTTTSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhcccccccCCCcCCcCcccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 332221111111111 1 556888888887776776666666555555554443
|
| >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.3e-19 Score=191.97 Aligned_cols=299 Identities=11% Similarity=0.079 Sum_probs=194.3
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
.+...+|+..|.+....|. .++.+.+++.+.++.. .+ |....+..++++++++++.+..+ ...++|++ ++||
T Consensus 52 ~G~~ylD~~s~~~~~~lGh--~~p~v~~A~~~~l~~~-~~-~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~--~~sG 123 (476)
T 3i5t_A 52 DGRRLIDGPAGMWCAQVGY--GRREIVDAMAHQAMVL-PY-ASPWYMATSPAARLAEKIATLTP--GDLNRIFF--TTGG 123 (476)
T ss_dssp TCCEEEETTHHHHTCTTCB--CCHHHHHHHHHHHHHC-CC-CCTTTCBCHHHHHHHHHHHTTSS--TTCCEEEE--ESSH
T ss_pred CCCEEEECCCchhhccCCC--CCHHHHHHHHHHHHhc-cC-cccCccCCHHHHHHHHHHHhcCC--CCcCEEEE--eCch
Confidence 4556789998877666664 3578888887776541 12 22225678899999999988764 34579999 9999
Q ss_pred hhHHHHHHHHHHHh-----CCCCCEEEEcCCCChhhHHHHhhcCCe-------------EEEEecc-cCCCCCCC-----
Q psy14428 241 SGSLRVGTAFLERF-----YPGVKTVYFPTPTWNGHVRFCTDSRLN-------------VGAYRYF-DNKTNGLD----- 296 (583)
Q Consensus 241 ~~al~l~~~~l~~~-----~~~gd~Vlv~~P~y~~~~~~~~~~G~~-------------~~~v~~~-d~~~~g~d----- 296 (583)
++|++.+..++... .++++.|++.+|+|..+.......+.. +..++.. ....++.+
T Consensus 124 seA~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 203 (476)
T 3i5t_A 124 STAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFL 203 (476)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCCGGGCTTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEEeCCCcccccCCCchHHHH
Confidence 99999875544332 033689999999998876555443321 2223220 00001212
Q ss_pred ---hhhHHHHHHcCC-CCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHH
Q psy14428 297 ---FAGMMEDIKAMP-ERSILFLQTSSHNPTGV-DLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFA 371 (583)
Q Consensus 297 ---~~~l~~~l~~~~-~~~~~i~i~~p~NPTG~-~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~ 371 (583)
++.+++.+.+.. ++++++++..++|++|. +++++.+++|.++|++||+++|+||+|.+|...+ .........
T Consensus 204 ~~~~~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g~gr~G---~~~~~~~~~ 280 (476)
T 3i5t_A 204 DDLVQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCG---EWFASEKVF 280 (476)
T ss_dssp HHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTS---SSCHHHHTT
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCcccc---Cceeeeccc
Confidence 677877775432 45677877778888885 8899999999999999999999999999987655 122222111
Q ss_pred HhcCcEEEEecCcccccccC-ccceEEEEEcCCchhHHHHHHHHHHH-------HhccccCCChHHHHHHHHHhCChhhh
Q psy14428 372 KEVGQLCLAQSFSKNMGLYG-ERVGTFSVLTPTSDETERIMSQLKIL-------IRGFYSNPPIHGARIVTEILSDPKLK 443 (583)
Q Consensus 372 ~~~~~vi~i~S~SK~~~l~G-lRiG~lv~~~p~~~~~~~li~~l~~~-------~~~~~~~~s~~~q~~~~~~l~~~~~~ 443 (583)
+..+.++ +|||.++ .| +|+|++++ + +++++.+... .....++.++++|.++.+.++.-.-+
T Consensus 281 ~v~pdi~---t~sK~l~-~G~~plg~v~~--~-----~~i~~~~~~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~~~~ 349 (476)
T 3i5t_A 281 GVVPDII---TFAKGVT-SGYVPLGGLAI--S-----EAVLARISGENAKGSWFTNGYTYSNQPVACAAALANIELMERE 349 (476)
T ss_dssp CCCCSEE---EECGGGG-TTSSCCEEEEE--C-----HHHHHTTSGGGCTTCEECCCCTTTTCHHHHHHHHHHHHHHHHT
T ss_pred CCCcchh---hhhhhhc-CCCcCeEEEEE--C-----HHHHHHHhcCCcccccccccCCCCcCHHHHHHHHHHHHHHHhH
Confidence 2223333 6899998 69 99999999 6 5888888753 22345678899999888887621112
Q ss_pred hhhhhHHHHHHHHHHHHhhc-----cCCCccchhhHHHHhcCC
Q psy14428 444 AQCDETERIMSQLKILIRGF-----YSNPPIHGARIVTEILSD 481 (583)
Q Consensus 444 ~~~~~~~~~~~~l~~~~r~~-----~~~~p~~g~~i~~~~l~~ 481 (583)
..+++.++..+.+++.++.. ....+..|.++++.+..+
T Consensus 350 ~~~~~~~~~~~~l~~~L~~l~~~~~v~~v~~~G~~~~i~~~~~ 392 (476)
T 3i5t_A 350 GIVDQAREMADYFAAALASLRDLPGVAETRSVGLVGCVQCLLD 392 (476)
T ss_dssp THHHHHHHHHHHHHHHHHTTTTSTTEEEEEEETTEEEEEECCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCceeEEEEecC
Confidence 22333333333333333321 223345677776666543
|
| >3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.7e-19 Score=188.27 Aligned_cols=207 Identities=16% Similarity=0.076 Sum_probs=150.9
Q ss_pred CCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCC-CCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCch
Q psy14428 163 PKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYA-NIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGS 241 (583)
Q Consensus 163 ~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~-~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~ 241 (583)
++.++++.+.+. .++.+.+++.+.+.. ..|. +..+..+||+++|++++.. ++++ ++||+
T Consensus 22 ~~~~~l~~~~p~-------~~~~~~~a~~~~~~~---~~~~~~~~~~~~l~~~la~~~~~~--------~~i~--~~~gt 81 (391)
T 3dr4_A 22 SDLPRISVAAPR-------LDGNERDYVLECMDT---TWISSVGRFIVEFEKAFADYCGVK--------HAIA--CNNGT 81 (391)
T ss_dssp ------CCCCCC-------CCSSHHHHHHHHHHH---TCCSSCSHHHHHHHHHHHHHHTCS--------EEEE--ESSHH
T ss_pred CCCceeccCCCC-------CCHHHHHHHHHHHHc---CCccCCChHHHHHHHHHHHHhCCC--------cEEE--eCCHH
Confidence 456677777663 346677777766654 2465 7889999999999999642 6677 88889
Q ss_pred hHHHHHHHHHHHh-CCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCC
Q psy14428 242 GSLRVGTAFLERF-YPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSH 320 (583)
Q Consensus 242 ~al~l~~~~l~~~-~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~ 320 (583)
+|+.++ +..+ ..+||+|++++|+|..+...++..|++++.+++ +++++++|++.+++.+ .+++++++ |+
T Consensus 82 ~al~~~---l~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~d~~~l~~~~---~~~~~~v~---~~ 151 (391)
T 3dr4_A 82 TALHLA---LVAMGIGPGDEVIVPSLTYIASANSVTYCGATPVLVDN-DPRTFNLDAAKLEALI---TPRTKAIM---PV 151 (391)
T ss_dssp HHHHHH---HHHHTCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECB-CTTTCSBCGGGSGGGC---CTTEEEEC---CB
T ss_pred HHHHHH---HHHcCCCCcCEEEECCCchHHHHHHHHHCCCEEEEEec-CccccCcCHHHHHHhc---CCCceEEE---EE
Confidence 999885 4445 667999999999999999999999999999999 6566889999998876 45677776 57
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCC-CCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEE
Q psy14428 321 NPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLT-SGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSV 399 (583)
Q Consensus 321 NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~-~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~ 399 (583)
||||...+ +++|+++|+++|++||+|++|.... +.+ .. . .... -+.+.||||..+++|.|.|++++
T Consensus 152 n~tG~~~~---~~~i~~l~~~~~~~li~D~a~~~g~~~~~--~~---~----~~~~-di~~~S~s~~K~l~~g~gg~~~~ 218 (391)
T 3dr4_A 152 HLYGQICD---MDPILEVARRHNLLVIEDAAEAVGATYRG--KK---S----GSLG-DCATFSFFGNAIITTGEGGMITT 218 (391)
T ss_dssp CGGGCCCC---HHHHHHHHHHTTCEEEEECTTCTTCEETT--EE---T----TSSS-SEEEEECBTTSSSCCBSCEEEEE
T ss_pred CCCCChhh---HHHHHHHHHHcCCEEEEECcccccceECC--ee---e----cccC-CEEEEECCCCCcCCcCCeEEEEE
Confidence 89999876 5667888999999999999998643 322 11 0 0111 27778877444445678999998
Q ss_pred EcCCchhHHHHHHHHHHHH
Q psy14428 400 LTPTSDETERIMSQLKILI 418 (583)
Q Consensus 400 ~~p~~~~~~~li~~l~~~~ 418 (583)
++ +.+++++....
T Consensus 219 --~~----~~~~~~~~~~~ 231 (391)
T 3dr4_A 219 --ND----DDLAAKMRLLR 231 (391)
T ss_dssp --SC----HHHHHHHHHHH
T ss_pred --CC----HHHHHHHHHHH
Confidence 65 46777776654
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.6e-19 Score=194.42 Aligned_cols=288 Identities=10% Similarity=0.054 Sum_probs=181.6
Q ss_pred CccccCCccccCCCCCCCCChHHHHHHHHHhccCCC--CCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCch
Q psy14428 164 KKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLD--HEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGS 241 (583)
Q Consensus 164 ~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~--~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~ 241 (583)
..+|+..|.+....|. .++.+.+++.+.+++... ..+.+.....+|++.+++++ + ...++|++ |+||+
T Consensus 76 ~ylD~~s~~~~~~lGh--~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~L~e~la~~~----~--~~~~~v~~--~~sGs 145 (457)
T 3tfu_A 76 EVLDAMSSWWTAIHGH--GHPALDQALTTQLRVMNHVMFGGLTHEPAARLAKLLVDIT----P--AGLDTVFF--SDSGS 145 (457)
T ss_dssp EEEETTHHHHTCTTCB--TCHHHHHHHHHHHHHCSCCCSSSEECHHHHHHHHHHHHHS----S--TTEEEEEE--ESSHH
T ss_pred EEEECCCcHhhhccCC--CCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhC----C--CCcCEEEE--eCcHH
Confidence 6789988877666664 357888887776654211 11222333455666666554 2 34579999 99999
Q ss_pred hHHHHHHHHHHHh----C-CCCCEEEEcCCCChhhHHHHhhcC--------------CeEEEEecccCCC-CCCChhhHH
Q psy14428 242 GSLRVGTAFLERF----Y-PGVKTVYFPTPTWNGHVRFCTDSR--------------LNVGAYRYFDNKT-NGLDFAGMM 301 (583)
Q Consensus 242 ~al~l~~~~l~~~----~-~~gd~Vlv~~P~y~~~~~~~~~~G--------------~~~~~v~~~d~~~-~g~d~~~l~ 301 (583)
+|++.+..++... . ++++.|++.+|+|..+.......+ ..+..++. .... ...|++.++
T Consensus 146 eA~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~d~~~le 224 (457)
T 3tfu_A 146 VSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQ-VPRDYDPAYSAAFE 224 (457)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC----------CCCCEEECC-CCSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCCcccccccccCCCCCceEecC-CCcccCHHHHHHHH
Confidence 9999875443322 0 334689999999977654443331 12333443 1111 113678888
Q ss_pred HHHHcCCCCcEEEEeCC-CCCCCCCCC-CHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEE
Q psy14428 302 EDIKAMPERSILFLQTS-SHNPTGVDL-SEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCL 379 (583)
Q Consensus 302 ~~l~~~~~~~~~i~i~~-p~NPTG~~~-s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~ 379 (583)
+.+++..++++++++.. +|||+|.++ +++.+++|.++|+++|+++|+||+|.+|...+. ......+ +...+++
T Consensus 225 ~~l~~~~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~gr~G~---~~a~~~~-~~~pdii- 299 (457)
T 3tfu_A 225 AQLAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGA---LFAADHA-GVSPDIM- 299 (457)
T ss_dssp HHHHHHGGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSTHHHH-TCCCSEE-
T ss_pred HHHHhCCCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccCCccccc---hhHhHhc-CCCceEE-
Confidence 88854335677777777 899999876 788899999999999999999999999876541 2222222 2233444
Q ss_pred EecCcccccccC-ccceEEEEEcCCchhHHHHHHHHHHH-----HhccccCCChHHHHHHHHHhC---ChhhhhhhhhHH
Q psy14428 380 AQSFSKNMGLYG-ERVGTFSVLTPTSDETERIMSQLKIL-----IRGFYSNPPIHGARIVTEILS---DPKLKAQCDETE 450 (583)
Q Consensus 380 i~S~SK~~~l~G-lRiG~lv~~~p~~~~~~~li~~l~~~-----~~~~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~ 450 (583)
||||.++ .| +|+||+++ + +++++.+... .....++.++++|.++...++ ++.+.++..+
T Consensus 300 --t~sK~l~-gG~~~lG~v~~--~-----~~i~~~~~~~~~~~~~~~~t~~~n~~a~aaa~aaL~~~~~~~~~~~~~~-- 367 (457)
T 3tfu_A 300 --CVGKALT-GGYLSLAATLC--T-----ADVAHTISAGAAGALMHGPTFMANPLACAVSVASVELLLGQDWRTRITE-- 367 (457)
T ss_dssp --EECGGGG-TTSSCCEEEEE--E-----HHHHHHHHHSSSCSCCCCCTTTTCHHHHHHHHHHHHHHHTSCHHHHHHH--
T ss_pred --EEChhhh-CCCcceEEEEE--c-----HHHHHHhhccCCCceeEecCCCcCHHHHHHHHHHHHHHhhhHHHHHHHH--
Confidence 9999887 45 79999999 6 5888888632 223456778898888877765 3333333332
Q ss_pred HHHHHHHHHHhhc-----cCCCccchhhHHHHhcC
Q psy14428 451 RIMSQLKILIRGF-----YSNPPIHGARIVTEILS 480 (583)
Q Consensus 451 ~~~~~l~~~~r~~-----~~~~p~~g~~i~~~~l~ 480 (583)
..+.+++.++.. +...+..|.++++.+..
T Consensus 368 -~~~~l~~~L~~l~~~~~v~~vr~~G~~~~i~l~~ 401 (457)
T 3tfu_A 368 -LAAGLTAGLDTARALPAVTDVRVCGAIGVIECDR 401 (457)
T ss_dssp -HHHHHHHHHGGGGGSTTEEEEEECSSCEEEEESS
T ss_pred -HHHHHHHHHHHHhcCCCeeeeecCCeEEEEEECC
Confidence 222222222221 22334567777776654
|
| >1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=5.6e-19 Score=186.33 Aligned_cols=196 Identities=12% Similarity=0.050 Sum_probs=148.8
Q ss_pred CChHHHHHHHHHhccCCCCCCCCCCC--CHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHh-CCCC
Q psy14428 182 VLPSVKEAERRIYEKNLDHEYANIGG--DAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERF-YPGV 258 (583)
Q Consensus 182 ~~~~v~~a~~~~~~~~~~~~Y~~~~G--~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~-~~~g 258 (583)
..+.+.+++.+.+.. +|.+..| ..+||+++|++++. ++|++ |+|+++|+.++ +..+ ..+|
T Consensus 10 ~~~~v~~a~~~~~~~----~~~~~~g~~~~~l~~~la~~~~~--------~~v~~--~~ggt~al~~~---~~~l~~~~g 72 (394)
T 1o69_A 10 MGGNELKYIEEVFKS----NYIAPLGEFVNRFEQSVKDYSKS--------ENALA--LNSATAALHLA---LRVAGVKQD 72 (394)
T ss_dssp --CCHHHHHHHHHHH----TTTSCTTHHHHHHHHHHHHHHCC--------SEEEE--ESCHHHHHHHH---HHHTTCCTT
T ss_pred CCHHHHHHHHHHHHc----CCccCCChHHHHHHHHHHHHhCC--------CcEEE--eCCHHHHHHHH---HHHcCCCCC
Confidence 445677777766643 3777678 89999999999953 68999 99999999985 4455 6779
Q ss_pred CEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHH
Q psy14428 259 KTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVV 338 (583)
Q Consensus 259 d~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~ 338 (583)
|+|++++|+|..+...++..|++++.+++ + +++.+|++.+++.+.....+++++++++ |||.. +++++|.++
T Consensus 73 d~Vl~~~~~~~~~~~~~~~~g~~~~~v~~-~-~~~~~d~~~l~~~i~~~~~~~~~v~~~~---~~G~~---~~l~~i~~l 144 (394)
T 1o69_A 73 DIVLASSFTFIASVAPICYLKAKPVFIDC-D-ETYNIDVDLLKLAIKECEKKPKALILTH---LYGNA---AKMDEIVEI 144 (394)
T ss_dssp CEEEEESSSCGGGTHHHHHTTCEEEEECB-C-TTSSBCHHHHHHHHHHCSSCCCEEEEEC---GGGCC---CCHHHHHHH
T ss_pred CEEEECCCccHHHHHHHHHcCCEEEEEEe-C-CCCCcCHHHHHHHHhcccCCceEEEEEC---CCCCh---hhHHHHHHH
Confidence 99999999999999999999999999998 5 4577899999998864322567777764 89955 457778889
Q ss_pred HHhcCeEEEEeccCC-CCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHH
Q psy14428 339 VKQRHLYPFFDMAYL-GLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKIL 417 (583)
Q Consensus 339 a~~~~i~iI~De~Y~-~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~ 417 (583)
|+++|++||+||+|. ++.+.+. ... ...+ +.+.||||..+++|.|+||+++ ++ +++++++...
T Consensus 145 ~~~~~~~li~Dea~~~g~~~~~~--~~~-------~~~~-~~~~s~s~~K~l~~~~~G~~~~--~~----~~l~~~l~~~ 208 (394)
T 1o69_A 145 CKENDIVLIEDAAEALGSFYKNK--ALG-------TFGE-FGVYSYNGNKIITTSGGGMLIG--KN----KEKIEKARFY 208 (394)
T ss_dssp HHHTTCEEEEECTTCTTCEETTE--ETT-------SSSS-EEEEECCTTSSSCCSSCEEEEE--SC----HHHHHHHHHH
T ss_pred HHHcCCEEEEECcCcccceeCCc--ccc-------cccC-cEEEEEeCCccCCCCCceEEEE--CC----HHHHHHHHHH
Confidence 999999999999998 5655431 110 1112 5667776555667889999999 65 4678887765
Q ss_pred H
Q psy14428 418 I 418 (583)
Q Consensus 418 ~ 418 (583)
.
T Consensus 209 ~ 209 (394)
T 1o69_A 209 S 209 (394)
T ss_dssp T
T ss_pred H
Confidence 3
|
| >2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1e-18 Score=185.69 Aligned_cols=196 Identities=16% Similarity=0.129 Sum_probs=146.5
Q ss_pred CChHHHHHHHHHhccCCCCCCCCCCCC----HHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHh-CC
Q psy14428 182 VLPSVKEAERRIYEKNLDHEYANIGGD----AKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERF-YP 256 (583)
Q Consensus 182 ~~~~v~~a~~~~~~~~~~~~Y~~~~G~----~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~-~~ 256 (583)
+++.+.+++.+.+.......|++..|. .++++.++++++ .. ++++ +++|++|+.++ +..+ ..
T Consensus 14 ~~~~~~~a~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g----~~----~~i~--~~~gt~al~~~---~~~~~~~ 80 (418)
T 2c81_A 14 HSDRTRRKIEEVFQSNRWAISGYWTGEESMERKFAKAFADFNG----VP----YCVP--TTSGSTALMLA---LEALGIG 80 (418)
T ss_dssp CCHHHHHHHHHHHHHTCCSTTSBCCSSCCHHHHHHHHHHHHHT----CS----EEEE--ESCHHHHHHHH---HHHTTCC
T ss_pred CCHHHHHHHHHHHhcCCccccCcccCCHHHHHHHHHHHHHHhC----CC----cEEE--eCCHHHHHHHH---HHHcCCC
Confidence 457888888887765422348878884 556666666653 32 3455 56668999885 4455 67
Q ss_pred CCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHH
Q psy14428 257 GVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLA 336 (583)
Q Consensus 257 ~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~ 336 (583)
+||+|++++|+|..+...++..|++++.+++ +++++++|++.+++.+ .+++++++++ ||||... ++++|.
T Consensus 81 ~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~d~~~l~~~i---~~~~~~v~~~---~~~G~~~---~~~~i~ 150 (418)
T 2c81_A 81 EGDEVIVPSLTWIATATAVLNVNALPVFVDV-EADTYCIDPQLIKSAI---TDKTKAIIPV---HLFGSMA---NMDEIN 150 (418)
T ss_dssp TTCEEEEESSSCTHHHHHHHHTTCEEEEECB-CTTTCSBCHHHHGGGC---CTTEEEECCB---CCTTCCC---CHHHHH
T ss_pred CcCEEEECCCccHhHHHHHHHcCCEEEEEec-CCCCCCcCHHHHHHhh---CCCCeEEEEe---CCcCCcc---cHHHHH
Confidence 7999999999999999999999999999998 5546789999988776 4567877754 5899864 577888
Q ss_pred HHHHhcCeEEEEeccCCCCC-CCCCCCchHHHHHHHHhcCcEEEEecC--cccccccCccceEEEEEcCCchhHHHHHHH
Q psy14428 337 VVVKQRHLYPFFDMAYLGLT-SGDFDKDAFSLRYFAKEVGQLCLAQSF--SKNMGLYGERVGTFSVLTPTSDETERIMSQ 413 (583)
Q Consensus 337 ~~a~~~~i~iI~De~Y~~l~-~~~~~~~~~~~~~~~~~~~~vi~i~S~--SK~~~l~GlRiG~lv~~~p~~~~~~~li~~ 413 (583)
++|+++|++||+||+|..+. +++ .. +.. .+ .+.+.|| ||.++. | |+||+++ ++ ++++++
T Consensus 151 ~~~~~~~~~li~D~a~~~~~~~~~--~~---~~~----~~-~~~~~s~s~~K~~~~-g-~~g~~~~--~~----~~l~~~ 212 (418)
T 2c81_A 151 EIAQEHNLFVIEDCAQSHGSVWNN--QR---AGT----IG-DIGAFSCQQGKVLTA-G-EGGIIVT--KN----PRLFEL 212 (418)
T ss_dssp HHHHHTTCEEEEECTTCTTCEETT--EE---TTS----SS-SEEEEECCTTSSSCS-S-SCEEEEE--SC----HHHHHH
T ss_pred HHHHHCCCEEEEECcccccCccCC--Ee---ccc----cc-ceEEEeccCCcccCC-C-CeEEEEE--CC----HHHHHH
Confidence 99999999999999999987 543 11 111 11 2777888 999995 8 9999998 65 467777
Q ss_pred HHHHH
Q psy14428 414 LKILI 418 (583)
Q Consensus 414 l~~~~ 418 (583)
+....
T Consensus 213 ~~~~~ 217 (418)
T 2c81_A 213 IQQLR 217 (418)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=8.7e-19 Score=187.20 Aligned_cols=283 Identities=11% Similarity=0.006 Sum_probs=177.1
Q ss_pred CCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCch
Q psy14428 162 HPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGS 241 (583)
Q Consensus 162 ~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~ 241 (583)
+...+|++.+.+....|. .++.+.+++.+.+.......| +..-..+|++.+++++. .+++|++ |+|++
T Consensus 55 g~~~lD~~~~~~~~~lG~--~~~~v~~a~~~~~~~~~~~~~-~~~~~~~l~~~la~~~~-------~~~~v~~--~~sgs 122 (434)
T 2epj_A 55 GARIVDLVLAYGPLILGH--KHPRVLEAVEEALARGWLYGA-PGEAEVLLAEKILGYVK-------RGGMIRF--VNSGT 122 (434)
T ss_dssp CCEEEESSGGGTTCTTCB--TCHHHHHHHHHHHHTCSCCSS-CCHHHHHHHHHHHHHHC-------TTCEEEE--ESSHH
T ss_pred CCEEEEcccchhcccCCC--CCHHHHHHHHHHHHhCCCCCC-CCHHHHHHHHHHHHhCC-------CCCEEEE--eCCHH
Confidence 445789998887554453 457888888877765322233 22223456666665542 3689999 99999
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHh--------------hcCC------eEEEEecccCCCCCCChhhHH
Q psy14428 242 GSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCT--------------DSRL------NVGAYRYFDNKTNGLDFAGMM 301 (583)
Q Consensus 242 ~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~--------------~~G~------~~~~v~~~d~~~~g~d~~~l~ 301 (583)
+|+.++..+.+.+.+ ++.|++.+|+|..+...+. ..|+ +++.+|. .|++.++
T Consensus 123 eA~~~al~~ar~~~~-~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~-------~d~~~le 194 (434)
T 2epj_A 123 EATMTAIRLARGYTG-RDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPY-------NDVEALE 194 (434)
T ss_dssp HHHHHHHHHHHHHHC-CCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEET-------TCHHHHH
T ss_pred HHHHHHHHHHHHhhC-CCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCC-------CCHHHHH
Confidence 999987544333555 6789999999987543221 1233 3555554 1788898
Q ss_pred HHHHcCCCCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEE
Q psy14428 302 EDIKAMPERSILFLQTSSHNPTGVDL-SEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLA 380 (583)
Q Consensus 302 ~~l~~~~~~~~~i~i~~p~NPTG~~~-s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i 380 (583)
+.+++..++++++++...+||||.++ +++.+++|.++|++||++||+||+|.+|.. + .......+ +.... +
T Consensus 195 ~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~~~-g---~~~~~~~~-~~~~d---i 266 (434)
T 2epj_A 195 RVFAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGFRL-G---LEGAQGYF-NIEGD---I 266 (434)
T ss_dssp HHHHHHGGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTTTS-S---TTHHHHHH-TCCCS---E
T ss_pred HHHHhCCCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchhceeC-C---cchhhHHh-CCCCC---e
Confidence 88854223455555544456799866 799999999999999999999999998843 2 11122221 22223 4
Q ss_pred ecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHH---hccccCCChHHHHHHHHHhC---ChhhhhhhhhHH-HHH
Q psy14428 381 QSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILI---RGFYSNPPIHGARIVTEILS---DPKLKAQCDETE-RIM 453 (583)
Q Consensus 381 ~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~---~~~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~-~~~ 453 (583)
.||||.++ .|+|+||+++ + +++++.+.... ....++.++++|.++...++ ++.+.++..+.. .+.
T Consensus 267 ~s~sK~l~-~G~~~G~v~~--~-----~~~~~~l~~~~~~~~~~t~~~~~~~~aa~~a~l~~~~~~~~~~~~~~~~~~l~ 338 (434)
T 2epj_A 267 IVLGKIIG-GGFPVGAVAG--S-----REVMSLLTPQGKVFNAGTFNAHPITMAAGLATLKALEEEPVYSVSREAAKALE 338 (434)
T ss_dssp EEEEGGGG-TTSSCEEEEE--C-----HHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred eeecchhc-CCcceeeeee--c-----HHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 59999999 4999999999 6 57777765421 12344678888888776664 223333333332 223
Q ss_pred HHHHHHHh-hccC-CCccchhhHHHHhcC
Q psy14428 454 SQLKILIR-GFYS-NPPIHGARIVTEILS 480 (583)
Q Consensus 454 ~~l~~~~r-~~~~-~~p~~g~~i~~~~l~ 480 (583)
+.++.+.. ..+. ..+..|.++|+.+..
T Consensus 339 ~~L~~~~~~~~~~~~~~~~g~~~~i~~~~ 367 (434)
T 2epj_A 339 EAASEVLDRTGLPYTINRVESMMQLFIGV 367 (434)
T ss_dssp HHHHHHHHHHTCCEEEEEETTEEEEEETC
T ss_pred HHHHHHHhhCCCcEEEEEeeeEEEEEEeC
Confidence 33333321 1222 235567787776654
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.82 E-value=7.1e-19 Score=187.33 Aligned_cols=281 Identities=14% Similarity=0.045 Sum_probs=177.3
Q ss_pred CCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCch
Q psy14428 162 HPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGS 241 (583)
Q Consensus 162 ~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~ 241 (583)
+...+|+..|.+....|. +++.+.+++.+.++......| ..++++++++.+.+..+ .+++|++ |+|++
T Consensus 51 g~~~iD~~~~~~~~~lG~--~~p~v~~a~~~~~~~~~~~~~-----~~~~~~~l~~~l~~~~~---~~~~v~~--~~~g~ 118 (424)
T 2e7u_A 51 GNRYLDYVMSWGPLILGH--AHPKVLARVRETLERGLTFGA-----PSPLEVALAKKVKRAYP---FVDLVRF--VNSGT 118 (424)
T ss_dssp CCEEEESSGGGTTCTTCB--TCHHHHHHHHHHHHTCSCCSS-----CCHHHHHHHHHHHHHCT---TCCEEEE--ESSHH
T ss_pred CCEEEEccccccccccCC--CCHHHHHHHHHHHHhCCCCCC-----CCHHHHHHHHHHHHhCC---CCCEEEE--eCCHH
Confidence 445689998887655553 457888888877765322222 34455555555554332 4689999 99999
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHh-h-------------cCC------eEEEEecccCCCCCCChhhHH
Q psy14428 242 GSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCT-D-------------SRL------NVGAYRYFDNKTNGLDFAGMM 301 (583)
Q Consensus 242 ~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~-~-------------~G~------~~~~v~~~d~~~~g~d~~~l~ 301 (583)
+|+..+..+.+.+.+ ++.|++.+|+|..+...+. . .|+ +++.+|. .|++.++
T Consensus 119 ea~~~al~~ar~~~~-~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~-------~d~~~le 190 (424)
T 2e7u_A 119 EATMSALRLARGYTG-RPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEY-------NDPEGLR 190 (424)
T ss_dssp HHHHHHHHHHHHHHC-CCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECT-------TCHHHHH
T ss_pred HHHHHHHHHHHHhhC-CCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCC-------CCHHHHH
Confidence 999987544333555 5889999999987644221 1 132 3444443 1788888
Q ss_pred HHHHcCCCCcEEEEeCCCCCC-CCCCC-CHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEE
Q psy14428 302 EDIKAMPERSILFLQTSSHNP-TGVDL-SEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCL 379 (583)
Q Consensus 302 ~~l~~~~~~~~~i~i~~p~NP-TG~~~-s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~ 379 (583)
+.+++..++ ..+++++|+|| ||.++ +++.+++|.++ ++||++||+||+|.+|..+. ...... .+....+
T Consensus 191 ~~l~~~~~~-~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~~~g~----~~~~~~-~~~~~di-- 261 (424)
T 2e7u_A 191 EVLKRRGEE-IAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGFRLAF----GGATEL-LGLKPDL-- 261 (424)
T ss_dssp HHHHHHGGG-EEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTTTSST----THHHHH-HTCCCSE--
T ss_pred HHHHhCCCC-EEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCccccccch----hHHHHH-hCCCcch--
Confidence 888532123 34555678776 89755 79999999999 99999999999999984321 122222 1222333
Q ss_pred EecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHH---hccccCCChHHHHHHHHHhC---C-hhhhhhhhhHHH-
Q psy14428 380 AQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILI---RGFYSNPPIHGARIVTEILS---D-PKLKAQCDETER- 451 (583)
Q Consensus 380 i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~---~~~~~~~s~~~q~~~~~~l~---~-~~~~~~~~~~~~- 451 (583)
.||||.++ +|+|+||+++ + +++++.+.... ....++.++++|.++...++ + +.+.++..+...
T Consensus 262 -~s~sK~l~-~G~~~G~~~~--~-----~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~ 332 (424)
T 2e7u_A 262 -VTLGKILG-GGLPAAAYAG--R-----REIMEKVAPLGPVYQAGTLSGNPLAMAAGLATLELLEENPGYYAYLEDLGAR 332 (424)
T ss_dssp -EEECGGGG-TTSSCEEEEE--C-----HHHHTTBTTTSSBCCCCTTCSCHHHHHHHHHHHHHHHHCTHHHHHHHHHHHH
T ss_pred -hhhhhhhh-CCcceEEEEE--c-----HHHHhhhcccCCcccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 49999999 6999999999 7 57777776522 12244678888888877664 2 333333333332
Q ss_pred HHHHHHHHHhh-cc-CCCccchhhHHHHhcC
Q psy14428 452 IMSQLKILIRG-FY-SNPPIHGARIVTEILS 480 (583)
Q Consensus 452 ~~~~l~~~~r~-~~-~~~p~~g~~i~~~~l~ 480 (583)
+.+.++.+... .+ ...+..|.++|+.+..
T Consensus 333 l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~ 363 (424)
T 2e7u_A 333 LEAGLKEVLKEKGLPHTVNRVGSMITVFFTE 363 (424)
T ss_dssp HHHHHHHHHHHTTCCCEEEEETTEEEEESSS
T ss_pred HHHHHHHHHHhCCCceEEEeeceEEEEEEeC
Confidence 22333333211 22 2245677888877653
|
| >3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans} | Back alignment and structure |
|---|
Probab=99.82 E-value=9.5e-20 Score=191.94 Aligned_cols=186 Identities=15% Similarity=0.043 Sum_probs=135.7
Q ss_pred CChHHHHHHHHHhccC---CCCCCCC----CCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHh
Q psy14428 182 VLPSVKEAERRIYEKN---LDHEYAN----IGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERF 254 (583)
Q Consensus 182 ~~~~v~~a~~~~~~~~---~~~~Y~~----~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~ 254 (583)
+++.+.+++.+.+... ....|.. .....++|++++++++ +++++|++ |+|+++|+.++ +..+
T Consensus 32 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~------~~~~~v~~--~~g~t~al~~~---~~~l 100 (400)
T 3vax_A 32 VDQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTVS------AEPDELIF--TSGATESNNIA---LLGL 100 (400)
T ss_dssp SCHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHTT------CCGGGEEE--ESCHHHHHHHH---HHTT
T ss_pred CCHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHcC------CCCCcEEE--eCCHHHHHHHH---HHHH
Confidence 4577777776665421 0111211 2234667777777664 35789999 99999999986 3334
Q ss_pred C----CCCC-EEEEcCCCChhhHHHHhh---cCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCC
Q psy14428 255 Y----PGVK-TVYFPTPTWNGHVRFCTD---SRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVD 326 (583)
Q Consensus 255 ~----~~gd-~Vlv~~P~y~~~~~~~~~---~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~ 326 (583)
. ++|| .|++++|+|+.+...+.. .|++++.+|+ ++ ++.+|++.+++.+ .++++++++++||||||.+
T Consensus 101 ~~~~~~~gd~~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~-~~-~~~~d~~~l~~~i---~~~~~~v~~~~~~nptG~~ 175 (400)
T 3vax_A 101 APYGERTGRRHIITSAIEHKAVLEPLEHLAGRGFEVDFLTP-GP-SGRISVEGVMERL---RPDTLLVSLMHVNNETGVI 175 (400)
T ss_dssp HHHHHHHTCCEEEEETTSCHHHHHHHHHHHTTTCEEEEECC-CT-TCCCCHHHHHTTC---CTTEEEEECCSBCTTTCBB
T ss_pred HHhhccCCCCEEEECccccHhHHHHHHHHHhcCCeEEEEcc-CC-CCCcCHHHHHHhc---CCCceEEEEECCCCCceee
Confidence 3 5699 999999999887665554 5999999998 54 4678999988776 5678999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEE-E
Q psy14428 327 LSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFS-V 399 (583)
Q Consensus 327 ~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv-~ 399 (583)
++ +++|+++|+++|++||+||+|...... ..+ ... ..+++.|+||.+|.+| +|+++ +
T Consensus 176 ~~---l~~i~~la~~~~~~li~D~a~~~~~~~------~~~----~~~-~d~~~~s~~K~~g~~g--~g~~~~~ 233 (400)
T 3vax_A 176 QP---VAELAQQLRATPTYLHVDAAQGYGKVP------GDL----TTP-IDMISISGHKIGAPKG--VGALVTR 233 (400)
T ss_dssp CC---HHHHHHHHTTSSCEEEEECTTTTTTSG------GGG----GSC-CSEEEEETGGGTSCSS--CEEEEEC
T ss_pred Cc---HHHHHHHHHhcCCEEEEEhhhhcCCCC------cCh----hhc-CcEEEEeHHHhCCCCc--eEEEEEe
Confidence 98 467788999999999999999743211 111 112 4588999999877555 67777 6
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A | Back alignment and structure |
|---|
Probab=99.82 E-value=3.5e-19 Score=190.46 Aligned_cols=281 Identities=13% Similarity=0.089 Sum_probs=172.3
Q ss_pred CCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCC--CCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCC
Q psy14428 162 HPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLD--HEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGIS 239 (583)
Q Consensus 162 ~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~--~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G 239 (583)
+...+|+..|.+....|. .++.+.+++.+.++.... ..| +.....+|++.+++++. .++|++ |+|
T Consensus 64 G~~ylD~~~g~~~~~lgh--~~p~v~~ai~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~g--------~~~v~~--~~s 130 (433)
T 1z7d_A 64 DKRYYDFLSAYSSVNQGH--CHPNILNAMINQAKNLTICSRAF-FSVPLGICERYLTNLLG--------YDKVLM--MNT 130 (433)
T ss_dssp CCEEEESSHHHHTTTTCB--TCHHHHHHHHHHHTTCSCCCTTS-EEHHHHHHHHHHHHHHT--------CSEEEE--ESS
T ss_pred CCEEEEcccchhhcccCC--CCHHHHHHHHHHHHhCCCccCCc-CCHHHHHHHHHHHhhcC--------CCeEEE--eCC
Confidence 446688888776544442 347888888877754211 122 23334667777777652 478999 999
Q ss_pred chhHHHHHHHHHHHh------CCCC-CEEEEcCCCChhhHH-HHhhcC------------CeEEEEecccCCCCCCChhh
Q psy14428 240 GSGSLRVGTAFLERF------YPGV-KTVYFPTPTWNGHVR-FCTDSR------------LNVGAYRYFDNKTNGLDFAG 299 (583)
Q Consensus 240 ~~~al~l~~~~l~~~------~~~g-d~Vlv~~P~y~~~~~-~~~~~G------------~~~~~v~~~d~~~~g~d~~~ 299 (583)
+++|+..+..++..+ .++| |.|++++|+|..+.. .+...| ..++.+|. .|++.
T Consensus 131 GseA~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~-------~d~~~ 203 (433)
T 1z7d_A 131 GAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPY-------DDLEA 203 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------------CEEEECT-------TCHHH
T ss_pred HHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCccccccCCCCCCCeEEeCC-------CCHHH
Confidence 999999875443321 1347 999999999987643 333333 23444444 17889
Q ss_pred HHHHHHcCCCCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEE
Q psy14428 300 MMEDIKAMPERSILFLQTSSHNPTGV-DLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLC 378 (583)
Q Consensus 300 l~~~l~~~~~~~~~i~i~~p~NPTG~-~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi 378 (583)
+++.++ .++++++++...+|+||. +++++.+++|.++|+++|++||+||+|.+|...+. ...... .+....++
T Consensus 204 le~~l~--~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~---~~~~~~-~~~~~di~ 277 (433)
T 1z7d_A 204 LEEELK--DPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGK---LLCVHH-YNVKPDVI 277 (433)
T ss_dssp HHHHHT--STTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS---SSGGGG-GTCCCSEE
T ss_pred HHHHhC--CCCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCc---chhhHh-cCCCCCEE
Confidence 988884 245666665544677897 47999999999999999999999999998765441 111111 11122333
Q ss_pred EEecCcccccccC-ccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCC---hhhhhhhhhHHH-HH
Q psy14428 379 LAQSFSKNMGLYG-ERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSD---PKLKAQCDETER-IM 453 (583)
Q Consensus 379 ~i~S~SK~~~l~G-lRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~---~~~~~~~~~~~~-~~ 453 (583)
||||.++ +| +|+||+++ + +++++.+........++.+++++.++...++. +.+.++..+... +.
T Consensus 278 ---t~sK~l~-~G~~~~G~v~~--~-----~~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~ 346 (433)
T 1z7d_A 278 ---LLGKALS-GGHYPISAVLA--N-----DDIMLVIKPGEHGSTYGGNPLAASICVEALNVLINEKLCENAEKLGGPFL 346 (433)
T ss_dssp ---EECGGGG-TTSSCCEEEEE--C-----HHHHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred ---EECcccc-CCCCCeEEEEE--C-----HHHHhhhccccccccCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 8999999 89 99999999 6 57777765543344567788888887776642 233333333332 22
Q ss_pred HHHHHHHhhccC---CCccchhhHHHHhcC
Q psy14428 454 SQLKILIRGFYS---NPPIHGARIVTEILS 480 (583)
Q Consensus 454 ~~l~~~~r~~~~---~~p~~g~~i~~~~l~ 480 (583)
+.++.+.. .+. ..+..|.++++.+..
T Consensus 347 ~~L~~l~~-~~~~~~~~~~~g~~~~i~~~~ 375 (433)
T 1z7d_A 347 ENLKRELK-DSKIVRDVRGKGLLCAIEFKN 375 (433)
T ss_dssp HHHHHHHT-TCTTEEEEEEETTEEEEEECT
T ss_pred HHHHHHHH-hCCCeEEEEeeeeEEEEEEcc
Confidence 33333211 121 234567777776643
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=9.1e-19 Score=187.51 Aligned_cols=283 Identities=11% Similarity=0.093 Sum_probs=181.9
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCC--CCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecC
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLD--HEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGI 238 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~--~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~ 238 (583)
.+...+|+..|.+....|. .++.+.+++.+.++.... ..| +..-..+|++.+++++. .++|++ |+
T Consensus 74 ~g~~ylD~~sg~~~~~lgh--~~p~v~~Ai~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~g--------~~~v~~--~~ 140 (439)
T 2oat_A 74 EGRKYFDFLSSYSAVNQGH--CHPKIVNALKSQVDKLTLTSRAF-YNNVLGEYEEYITKLFN--------YHKVLP--MN 140 (439)
T ss_dssp TCCEEEESSGGGGTTTTCB--TCHHHHHHHHHHHTTCSCCCTTS-EESSHHHHHHHHHHHHT--------CSEEEE--ES
T ss_pred CCCEEEEccCCcccccCCC--CCHHHHHHHHHHHHhcCcccCcc-CCHHHHHHHHHHHHhcC--------CCEEEE--eC
Confidence 3456789998877544442 347888888777754211 123 23445788888888773 478999 99
Q ss_pred CchhHHHHHHHHHHHh------CCCC-CEEEEcCCCChhhH-HHHhhcC------------CeEEEEecccCCCCCCChh
Q psy14428 239 SGSGSLRVGTAFLERF------YPGV-KTVYFPTPTWNGHV-RFCTDSR------------LNVGAYRYFDNKTNGLDFA 298 (583)
Q Consensus 239 G~~~al~l~~~~l~~~------~~~g-d~Vlv~~P~y~~~~-~~~~~~G------------~~~~~v~~~d~~~~g~d~~ 298 (583)
|+++|++.+..++..+ .++| |.|++.+|+|..+. ..+...| ..++.+|. + |++
T Consensus 141 sGseA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~-~------d~~ 213 (439)
T 2oat_A 141 TGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPY-N------DLP 213 (439)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCHHHHTTSCSCCTTEEEECS-S------CHH
T ss_pred CHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcCCChhcccCCCCCCCCeEEeCC-C------CHH
Confidence 9999999875443321 1346 89999999997653 3444444 35666654 1 788
Q ss_pred hHHHHHHcCCCCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcE
Q psy14428 299 GMMEDIKAMPERSILFLQTSSHNPTGV-DLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQL 377 (583)
Q Consensus 299 ~l~~~l~~~~~~~~~i~i~~p~NPTG~-~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~v 377 (583)
.+++.++ .++++++++...+|+||. +++++.+++|.++|++||+++|+||+|.+|...+. ...+.. .+....+
T Consensus 214 ~le~~l~--~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~---~~~~~~-~~~~~Di 287 (439)
T 2oat_A 214 ALERALQ--DPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGR---WLAVDY-ENVRPDI 287 (439)
T ss_dssp HHHHHTT--STTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS---SSGGGG-GTCCCSE
T ss_pred HHHHHhC--CCCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCc---chhHHH-hCCCCcE
Confidence 8888874 245666665444567896 57999999999999999999999999988765441 111111 1112233
Q ss_pred EEEecCcccccccC-ccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHH
Q psy14428 378 CLAQSFSKNMGLYG-ERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQL 456 (583)
Q Consensus 378 i~i~S~SK~~~l~G-lRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l 456 (583)
+ ||||.++ +| +|+||+++ + +++++.+........++.+++++.++...++.-.-+...++.++..+.+
T Consensus 288 ~---t~sK~l~-~G~~~~G~v~~--~-----~~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l 356 (439)
T 2oat_A 288 V---LLGKALS-GGLYPVSAVLC--D-----DDIMLTIKPGEHGSTYGGNPLGCRVAIAALEVLEEENLAENADKLGIIL 356 (439)
T ss_dssp E---EECGGGG-TTSSCCEEEEE--C-----HHHHTTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred E---Eeccccc-CCCCCeEEEEE--C-----HHHHhccCCCCcccCCCcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3 9999999 79 99999999 6 5777776654334456778888888777665211112222233333333
Q ss_pred HHHHhhc-cC---CCccchhhHHHHhcC
Q psy14428 457 KILIRGF-YS---NPPIHGARIVTEILS 480 (583)
Q Consensus 457 ~~~~r~~-~~---~~p~~g~~i~~~~l~ 480 (583)
.+.++.. +. ..+..|.++++.+..
T Consensus 357 ~~~L~~l~~~~~~~~~~~g~~~~v~l~~ 384 (439)
T 2oat_A 357 RNELMKLPSDVVTAVRGKGLLNAIVIKE 384 (439)
T ss_dssp HHHHTTSCTTTEEEEEEETTEEEEEECC
T ss_pred HHHHHHhcCCCcEEEEeeeeEEEEEEec
Confidence 3333322 22 134567777776643
|
| >3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.2e-19 Score=186.30 Aligned_cols=203 Identities=15% Similarity=0.084 Sum_probs=154.2
Q ss_pred CccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhH
Q psy14428 164 KKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGS 243 (583)
Q Consensus 164 ~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~a 243 (583)
..++++.+.++ ..+ +.+++.+.... ..|.+..+..+||++++++++. +++++ ++||++|
T Consensus 7 ~~~~l~~~~~~-------~~~-~~~~~~~~~~~---~~~~~~~~~~~l~~~la~~~~~--------~~~~~--~~~gt~a 65 (374)
T 3uwc_A 7 PYSYLERQFAD-------IEP-YLNDLREFIKT---ADFTLGAELEKFEKRFAALHNA--------PHAIG--VGTGTDA 65 (374)
T ss_dssp CSCCHHHHTSS-------CHH-HHHHHHHHHHH---TCCSSCHHHHHHHHHHHHHTTC--------SEEEE--ESCHHHH
T ss_pred eeeccccCCCC-------chH-HHHHHHHHHHc---CCcccChhHHHHHHHHHHHhCC--------CcEEE--eCCHHHH
Confidence 35666666653 334 77777776654 2578888999999999999863 26777 8889999
Q ss_pred HHHHHHHHHHh-CCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCC
Q psy14428 244 LRVGTAFLERF-YPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNP 322 (583)
Q Consensus 244 l~l~~~~l~~~-~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NP 322 (583)
+.++ +..+ ..+||+|++++|+|..+...++..|++++.+++ + +++.+|++.+++.+ .+++++++ |+||
T Consensus 66 ~~~~---~~~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-~-~~~~~d~~~l~~~~---~~~~~~v~---~~n~ 134 (374)
T 3uwc_A 66 LAMS---FKMLNIGAGDEVITCANTFIASVGAIVQAGATPVLVDS-E-NGYVIDPEKIEAAI---TDKTKAIM---PVHY 134 (374)
T ss_dssp HHHH---HHHTTCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECB-C-TTSSBCGGGTGGGC---CTTEEEEC---CBCG
T ss_pred HHHH---HHHcCCCCCCEEEECCCccHHHHHHHHHcCCEEEEEec-C-CCCCcCHHHHHHhC---CCCceEEE---EeCC
Confidence 9884 4556 677999999999999999999999999999998 5 45788999998876 45677766 8999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCC-CCCCCchHHHHHHHHhcCcEEEEecCc--ccccccCccceEEEE
Q psy14428 323 TGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTS-GDFDKDAFSLRYFAKEVGQLCLAQSFS--KNMGLYGERVGTFSV 399 (583)
Q Consensus 323 TG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~-~~~~~~~~~~~~~~~~~~~vi~i~S~S--K~~~l~GlRiG~lv~ 399 (583)
||.+.+ +++|.++|+++|+++|+||+|..+.. ++ .. . ... ..+++.||| |.++.+|. .|++++
T Consensus 135 ~G~~~~---~~~i~~~~~~~~~~li~D~~~~~g~~~~~--~~---~----~~~-~d~~~~s~~~~K~l~~~g~-~g~~~~ 200 (374)
T 3uwc_A 135 TGNIAD---MPALAKIAKKHNLHIVEDACQTILGRIND--KF---V----GSW-GQFACFSLHPLKNLNVWSD-AGVIIT 200 (374)
T ss_dssp GGCCCC---HHHHHHHHHHTTCEEEEECTTCTTCEETT--EE---T----TSS-SSEEEEECSSSSSSCCSSC-CEEEEE
T ss_pred cCCcCC---HHHHHHHHHHcCCEEEEeCCCccCceeCC--ee---c----ccc-ccEEEEeCCCCCcCCccce-eEEEEe
Confidence 999876 66778889999999999999987543 22 01 1 000 246677766 99985476 899998
Q ss_pred EcCCchhHHHHHHHHHHHH
Q psy14428 400 LTPTSDETERIMSQLKILI 418 (583)
Q Consensus 400 ~~p~~~~~~~li~~l~~~~ 418 (583)
++ +.+++++....
T Consensus 201 --~~----~~~~~~~~~~~ 213 (374)
T 3uwc_A 201 --HS----DEYAEKLRLYR 213 (374)
T ss_dssp --SC----HHHHHHHHHHT
T ss_pred --CC----HHHHHHHHHHH
Confidence 65 46777777654
|
| >3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.4e-19 Score=184.99 Aligned_cols=203 Identities=12% Similarity=0.003 Sum_probs=137.2
Q ss_pred ChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCE--
Q psy14428 183 LPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKT-- 260 (583)
Q Consensus 183 ~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~-- 260 (583)
++.+.+++.+.. ....|.+..+..+||++++++++.. ..++ ++||++|+.++ +..+..+||.
T Consensus 28 ~p~v~~ai~~~~---~~~~~~~~~~~~~l~~~la~~~~~~--------~~i~--~~~g~~a~~~a---~~~~~~~g~~~v 91 (359)
T 3pj0_A 28 LTEALQNIDDNL---ESDIYGNGAVIEDFETKIAKILGKQ--------SAVF--FPSGTMAQQIA---LRIWADRKENRR 91 (359)
T ss_dssp HHHHTTTSCTTC---BCCBTTBSHHHHHHHHHHHHHHTCS--------EEEE--ESCHHHHHHHH---HHHHHHHHTCCE
T ss_pred CHHHHHHHHhhc---ccCcccCCHHHHHHHHHHHHHhCCC--------cEEE--eCCHHHHHHHH---HHHHHhcCCCcE
Confidence 355555544422 1356878888999999999998632 2245 56677888875 3334344675
Q ss_pred EEEcCCCChhhH---HHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCC-CCCCCHHHHHHHH
Q psy14428 261 VYFPTPTWNGHV---RFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPT-GVDLSEDQWRQLA 336 (583)
Q Consensus 261 Vlv~~P~y~~~~---~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPT-G~~~s~~~~~~l~ 336 (583)
|+++.|++.... ......|++++.+|. + ++++|++.+++. .+++++++++|||||| |.+++.+++++|+
T Consensus 92 vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~-~--~~~~d~~~l~~~----~~~~~~v~~~~p~n~~~G~~~~~~~l~~l~ 164 (359)
T 3pj0_A 92 VAYHPLSHLEIHEQDGLKELQQITPLLLGT-A--NQLLTIDDIKSL----REPVSSVLIELPQREIGGQLPAFEELEKIS 164 (359)
T ss_dssp EEECTTCHHHHSSTTHHHHHHCCEEEECSC-T--TSCCCHHHHHTC----SSCCSEEEEESSBGGGTSBCCCHHHHHHHH
T ss_pred EEEeccceeeehhcchHHHhcCceEEecCC-c--CCCcCHHHHHhc----cCCceEEEEEecccCCCcccCCHHHHHHHH
Confidence 555555543321 222556999998876 3 368899888765 4678899999999998 7999999999999
Q ss_pred HHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHH
Q psy14428 337 VVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKI 416 (583)
Q Consensus 337 ~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~ 416 (583)
++|+++|++||+|++|..+.... ...+...+.. ... +++.||||.++.++ . ||+++ + +++++++..
T Consensus 165 ~~~~~~~~~li~D~a~~~~~~~~---~~~~~~~~~~-~~d-~~~~s~sK~~~~~~-g-g~~~~--~-----~~l~~~~~~ 230 (359)
T 3pj0_A 165 EYCHEQGISLHLDGARLWEITPF---YQKSAEEICA-LFD-SVYVSFYKGIGGIA-G-AILAG--N-----DDFVQEAKI 230 (359)
T ss_dssp HHHHHHTCEEEEEETTCGGGHHH---HTCCHHHHHT-TCS-EEEEESSSTTCCSS-C-EEEEE--C-----HHHHHHHHH
T ss_pred HHHHHcCCEEEEECcchhcchhh---hCCCHHHhhc-cCC-EEEEeccccCCCcc-e-EEEEC--C-----HHHHHHHHH
Confidence 99999999999999986543210 0001222222 223 34568999998653 2 77777 5 589999887
Q ss_pred HHhccc
Q psy14428 417 LIRGFY 422 (583)
Q Consensus 417 ~~~~~~ 422 (583)
......
T Consensus 231 ~~~~~~ 236 (359)
T 3pj0_A 231 WKRRYG 236 (359)
T ss_dssp HHHHTT
T ss_pred HHHHhC
Confidence 654443
|
| >4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.6e-18 Score=184.91 Aligned_cols=283 Identities=12% Similarity=0.047 Sum_probs=175.5
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
.+...+|+..+.+....|. .++.+.+++.+.+.......| +.....+|++.+++++. .+++|++ |+||
T Consensus 51 ~g~~ylD~~~~~~~~~lG~--~~p~v~~A~~~~~~~~~~~~~-~~~~~~~la~~l~~~~~-------~~~~v~~--~~sG 118 (429)
T 4e77_A 51 DGKAYIDYVGSWGPMILGH--NHPAIRQAVIEAVERGLSFGA-PTEMEVKMAQLVTDLVP-------TMDMVRM--VNSG 118 (429)
T ss_dssp TCCEEEESSGGGTTCTTCB--TCHHHHHHHHHHHTTCSCCSS-CCHHHHHHHHHHHHHST-------TCSEEEE--ESSH
T ss_pred CCCEEEECCCchhccccCC--CCHHHHHHHHHHHHhCcccCC-CCHHHHHHHHHHHhhCC-------CCCEEEE--eCcH
Confidence 4556799988887655664 357888888877765322334 44444566666666542 3689999 9999
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHh-hcC-------------------CeEEEEecccCCCCCCChhhH
Q psy14428 241 SGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCT-DSR-------------------LNVGAYRYFDNKTNGLDFAGM 300 (583)
Q Consensus 241 ~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~-~~G-------------------~~~~~v~~~d~~~~g~d~~~l 300 (583)
++|++.+..+.+...+ ++.|++.+++|..+..... ..| ..+..++. -|++.+
T Consensus 119 sea~~~al~~a~~~~~-~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l 190 (429)
T 4e77_A 119 TEATMSAIRLARGYTG-RDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTY-------NDLASV 190 (429)
T ss_dssp HHHHHHHHHHHHHHHC-CCEEEEETTCCCC------------------CCCTTSCGGGGTTEEEECT-------TCHHHH
T ss_pred HHHHHHHHHHHHHhhC-CCEEEEEcCccCCCChhhhhhcCCcccccCCCCcCCCCCccCCceeecCC-------CCHHHH
Confidence 9999987554433333 6899999999987654211 111 11222222 178899
Q ss_pred HHHHHcCCCCcEEEEeCCCCCCCCCCCCH--HHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEE
Q psy14428 301 MEDIKAMPERSILFLQTSSHNPTGVDLSE--DQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLC 378 (583)
Q Consensus 301 ~~~l~~~~~~~~~i~i~~p~NPTG~~~s~--~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi 378 (583)
++.+++..+++ .+++++|+||+|.++.. +.+++|.++|++||+++|+||+|.+| ..+ ....... .+....
T Consensus 191 e~~l~~~~~~~-~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~-r~g---~~~~~~~-~~~~pd-- 262 (429)
T 4e77_A 191 RQAFEQYPQEV-ACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGF-RVA---LAGAQDY-YHVIPD-- 262 (429)
T ss_dssp HHHHHHSTTTE-EEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBT-TTB---TTCHHHH-TTCCCS--
T ss_pred HHHHHhcCCCE-EEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCc-ccC---cchHHHh-cCCCCC--
Confidence 88886543444 45557888887755544 45999999999999999999999998 433 1112222 122223
Q ss_pred EEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHH---hccccCCChHHHHHHHHHhC---ChhhhhhhhhH-HH
Q psy14428 379 LAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILI---RGFYSNPPIHGARIVTEILS---DPKLKAQCDET-ER 451 (583)
Q Consensus 379 ~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~---~~~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~-~~ 451 (583)
+.||||.++ +|+|+||+++ + +++++.+.... ....++.+++++.++...++ ++.+.++..+. ..
T Consensus 263 -i~t~sK~~~-~G~~~G~~~~--~-----~~~~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~ 333 (429)
T 4e77_A 263 -LTCLGKIIG-GGMPVGAFGG--R-----REVMNALAPTGPVYQAGTLSGNPIAMAAGFACLTEISQVGVYETLTELTDS 333 (429)
T ss_dssp -EEEEEGGGG-TTSCCEEEEE--C-----HHHHTTBTTTSSBCC--CCCCCHHHHHHHHHHHHHHTSTTHHHHHHHHHHH
T ss_pred -eeeeccccc-CCCCeEEEEE--C-----HHHHHHhccCCCccccCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 359999999 8999999999 6 57888776531 22345778888888877665 33333333332 23
Q ss_pred HHHHHHHHHhh--ccCCCccchhhHHHHhcC
Q psy14428 452 IMSQLKILIRG--FYSNPPIHGARIVTEILS 480 (583)
Q Consensus 452 ~~~~l~~~~r~--~~~~~p~~g~~i~~~~l~ 480 (583)
..+.++.+... .....+..|.++++.+..
T Consensus 334 l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~ 364 (429)
T 4e77_A 334 LATGLRHAAKEENIPLVVNHVGGMFGLFFTN 364 (429)
T ss_dssp HHHHHHHHHHHTTCCCEEEEETTEEEEECCS
T ss_pred HHHHHHHHHHhCCCceEEEEeeeEEEEEEcc
Confidence 33334333322 122345567777776654
|
| >3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=99.80 E-value=5.7e-19 Score=182.97 Aligned_cols=241 Identities=12% Similarity=0.066 Sum_probs=159.8
Q ss_pred CChHHHHHHHHHhccCCCCCCC-CCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCE
Q psy14428 182 VLPSVKEAERRIYEKNLDHEYA-NIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKT 260 (583)
Q Consensus 182 ~~~~v~~a~~~~~~~~~~~~Y~-~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~ 260 (583)
+++.+.+++.+.+.+. ..+|. ...+..++.+.+.+++.+..|.. ++++|++ |+|+++++.++ +..+..+ +.
T Consensus 15 ~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~la~~~g~~-~~~~v~~--~~g~t~al~~~---~~~l~~~-~~ 86 (362)
T 3ffr_A 15 LYPTVRQHMITALDEK-IGVISHRSKKFEEVYKTASDNLKTLLELP-SNYEVLF--LASATEIWERI---IQNCVEK-KS 86 (362)
T ss_dssp CCTTHHHHHHHHHHTT-TTTSCTTSHHHHHHHHHHHHHHHHHTTCC-TTEEEEE--ESCHHHHHHHH---HHHHCSS-EE
T ss_pred CCHHHHHHHHHHhcCC-ccCcCCCCHHHHHHHHHHHHHHHHHhCCC-CCcEEEE--eCCchHHHHHH---HHhccCC-cE
Confidence 4566776665555442 21111 22333344555555554444443 5678999 99999999985 4456665 56
Q ss_pred EEEcCCCChh-hHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHH
Q psy14428 261 VYFPTPTWNG-HVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVV 339 (583)
Q Consensus 261 Vlv~~P~y~~-~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a 339 (583)
+++..|.|.. +...++..|++++.++. +. ++.+|++.++ ..++++++++++||||||.+++ +++|.++|
T Consensus 87 i~~~~~~~~~~~~~~~~~~g~~~~~v~~-~~-~~~~d~~~l~-----~~~~~~~v~~~~~~nptG~~~~---l~~i~~la 156 (362)
T 3ffr_A 87 FHCVNGSFSKRFYEFAGELGREAYKEEA-AF-GKGFYPADIT-----VPADAEIICLTHNETSSGVSMP---VEDINTFR 156 (362)
T ss_dssp EEEECSHHHHHHHHHHHHTTCEEEEEEC-CT-TCCCCGGGCC-----CCTTCCEEEEESEETTTTEECC---HHHHTTSG
T ss_pred EEEcCcHHHHHHHHHHHHhCCCeEEEec-CC-CCCCCHHHHh-----ccCCccEEEEEcCCCCcceeCC---HHHHHHHH
Confidence 6667777773 34567788999999998 43 4688998886 3678899999999999999999 55678889
Q ss_pred Hhc-CeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCccccc-ccCccceEEEEEcCCchhHHHHHHHHHHH
Q psy14428 340 KQR-HLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMG-LYGERVGTFSVLTPTSDETERIMSQLKIL 417 (583)
Q Consensus 340 ~~~-~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~-l~GlRiG~lv~~~p~~~~~~~li~~l~~~ 417 (583)
+++ |++||+|++|....... +. . ...+++.|+||.++ ++|+ |++++ + +++++++...
T Consensus 157 ~~~p~~~li~D~a~~~~~~~~---~~-------~--~~d~~~~s~~K~~~~~~G~--g~~~~--~-----~~~~~~~~~~ 215 (362)
T 3ffr_A 157 DKNKDALIFVDAVSSLPYPKF---DW-------T--KIDSVFFSVQKCFGLPAGL--GVWIL--N-----DRVIEKSKAL 215 (362)
T ss_dssp GGSTTSEEEEECTTTTTSSCC---CT-------T--SCSEEEEETTSTTCCCSCC--EEEEE--E-----HHHHHHHHHH
T ss_pred HhCCCCEEEEecccccCCccc---Ch-------h--HCcEEEEecccccCCCCce--EEEEE--C-----HHHHHHhhhc
Confidence 999 99999999997654321 10 1 13488899999998 7884 77777 5 5788877765
Q ss_pred Hh---------------------ccccCCChHHHHHHHHHhC---ChhhhhhhhhHHHHHHHHHHHHh
Q psy14428 418 IR---------------------GFYSNPPIHGARIVTEILS---DPKLKAQCDETERIMSQLKILIR 461 (583)
Q Consensus 418 ~~---------------------~~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~l~~~~r 461 (583)
.. ....+++...+.++...++ +..+++..++.++..+.+.+.++
T Consensus 216 ~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~ 283 (362)
T 3ffr_A 216 LAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTYIE 283 (362)
T ss_dssp HHTTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHH
Confidence 43 1145567777766666554 22244444444444444444443
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.9e-18 Score=186.66 Aligned_cols=299 Identities=11% Similarity=0.080 Sum_probs=186.9
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
.+...+|+..|.+....|.. ++.+.+++.+.++.. ...|....+..+.+.++++.+.+..+ ...++|++ ++||
T Consensus 53 ~G~~ylD~~s~~~~~~lGh~--~p~v~~A~~~~~~~~-~~~~~~~~~~~~~~~~lae~l~~~~~--~~~~~v~~--~~sG 125 (472)
T 3hmu_A 53 EGEEILDAMAGLWCVNIGYG--RDELAEVAARQMREL-PYYNTFFKTTHVPAIALAQKLAELAP--GDLNHVFF--AGGG 125 (472)
T ss_dssp TCCEEECTTHHHHTCTTCBC--CHHHHHHHHHHHHHC-SCCCSSSSEECHHHHHHHHHHHHHSC--TTEEEEEE--ESSH
T ss_pred CCCEEEECCCchhhccCCCC--CHHHHHHHHHHHHhc-cccccccccCCHHHHHHHHHHHHhCC--CCCCEEEE--eCCH
Confidence 45567899988776666643 578888887776542 22344444555666667766665432 34679999 9999
Q ss_pred hhHHHHHHHHHHHhC-----CCCCEEEEcCCCChhhHHHHhhcCC------------eEEEEecc---cCCCCCCC----
Q psy14428 241 SGSLRVGTAFLERFY-----PGVKTVYFPTPTWNGHVRFCTDSRL------------NVGAYRYF---DNKTNGLD---- 296 (583)
Q Consensus 241 ~~al~l~~~~l~~~~-----~~gd~Vlv~~P~y~~~~~~~~~~G~------------~~~~v~~~---d~~~~g~d---- 296 (583)
++|++.+..++.... ++++.|++.+|+|..+.......+. .+..++.. ...++ .|
T Consensus 126 seA~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~-~~~~~~ 204 (472)
T 3hmu_A 126 SEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVHHINQPNWWAEGGD-MDPEEF 204 (472)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTCCCSSEEEECCCCHHHHCTT-CCHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCChhhccccCCCCCcEEeCCCccccCCcc-cCHHHH
Confidence 999998755544321 3468999999999887655544433 23344431 00111 23
Q ss_pred ----hhhHHHHHHcCC-CCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHH
Q psy14428 297 ----FAGMMEDIKAMP-ERSILFLQTSSHNPTGVDL-SEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYF 370 (583)
Q Consensus 297 ----~~~l~~~l~~~~-~~~~~i~i~~p~NPTG~~~-s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~ 370 (583)
++.+++.+.+.. +++.++++..++|++|.+. +++.+++|.++|+++|+++|.||+|.+|...+. ......+
T Consensus 205 ~~~~~~~le~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~---~~a~~~~ 281 (472)
T 3hmu_A 205 GLARARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTGN---WFGTQTM 281 (472)
T ss_dssp HHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS---SCHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccCCcccCc---cchhHHh
Confidence 677777775432 3456666656666777654 899999999999999999999999999876541 2222222
Q ss_pred HHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHH--HhccccCCChHHHHHHHHHhC---Chhhhhh
Q psy14428 371 AKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKIL--IRGFYSNPPIHGARIVTEILS---DPKLKAQ 445 (583)
Q Consensus 371 ~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~--~~~~~~~~s~~~q~~~~~~l~---~~~~~~~ 445 (583)
+....++ +|||.++..|+|+||+++ + +++++.+... .....++.++++|.++...++ ++.+.++
T Consensus 282 -~v~pdi~---t~sK~l~gg~~plG~v~~--~-----~~i~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~~~~~~~~~ 350 (472)
T 3hmu_A 282 -GIRPHIM---TIAKGLSSGYAPIGGSIV--C-----DEVAHVIGKDEFNHGYTYSGHPVAAAVALENLRILEEENILDH 350 (472)
T ss_dssp -TCCCSEE---EECGGGTTTSSCCEEEEE--E-----HHHHHHHTTSCBCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred -CCCCcee---eechhhhcCCcceEEEEE--C-----HHHHHhcccCCccccCCCCCCHHHHHHHHHHHHHHHHhHHHHH
Confidence 2233333 689999855599999999 6 5888888321 223356788999998888776 2333333
Q ss_pred hh-hH-HHHHHHHHHHHh-hccCCCccchhhHHHHhcCC
Q psy14428 446 CD-ET-ERIMSQLKILIR-GFYSNPPIHGARIVTEILSD 481 (583)
Q Consensus 446 ~~-~~-~~~~~~l~~~~r-~~~~~~p~~g~~i~~~~l~~ 481 (583)
.. +. ..+.+.++.+.+ ..+...+..|.++++.+..+
T Consensus 351 ~~~~~~~~l~~~L~~l~~~~~v~~vr~~G~~~~i~~~~~ 389 (472)
T 3hmu_A 351 VRNVAAPYLKEKWEALTDHPLVGEAKIVGMMASIALTPN 389 (472)
T ss_dssp HHHTHHHHHHHHHHGGGGSTTEEEEEEETTEEEEEECSC
T ss_pred HHHHHHHHHHHHHHHHhcCCCeEEEEecCceEEEEEecC
Confidence 22 22 222222222111 11223445677777666543
|
| >3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-18 Score=181.93 Aligned_cols=193 Identities=13% Similarity=0.091 Sum_probs=150.1
Q ss_pred ChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHh-CCCCCEE
Q psy14428 183 LPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERF-YPGVKTV 261 (583)
Q Consensus 183 ~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~-~~~gd~V 261 (583)
.+.+.+++.+.+.. ..|.+..+..+||+++|++++. +++++ |+||++|+.++ +..+ ..+||+|
T Consensus 15 ~~~v~~a~~~~~~~---~~~~~~~~~~~l~~~la~~~~~--------~~~~~--~~sGt~al~~a---l~~~~~~~gd~V 78 (367)
T 3nyt_A 15 KDKIDAGIQRVLRH---GQYILGPEVTELEDRLADFVGA--------KYCIS--CANGTDALQIV---QMALGVGPGDEV 78 (367)
T ss_dssp HHHHHHHHHHHHHH---CCCSSCHHHHHHHHHHHHHHTC--------SEEEE--ESCHHHHHHHH---HHHTTCCTTCEE
T ss_pred CHHHHHHHHHHHhc---CCccCChHHHHHHHHHHHHhCC--------CcEEE--eCCHHHHHHHH---HHHhCCCCcCEE
Confidence 45677777766653 2466778899999999999963 36788 99999999985 4445 6679999
Q ss_pred EEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHh
Q psy14428 262 YFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQ 341 (583)
Q Consensus 262 lv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~ 341 (583)
+++.|+|..+...++..|++++.+++ +++++.+|++.+++.+ .+++++++ |+||||...+ +++|.++|++
T Consensus 79 i~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~d~~~l~~~i---~~~~~~v~---~~~~~G~~~~---~~~i~~la~~ 148 (367)
T 3nyt_A 79 ITPGFTYVATAETVALLGAKPVYVDI-DPRTYNLDPQLLEAAI---TPRTKAII---PVSLYGQCAD---FDAINAIASK 148 (367)
T ss_dssp EEESSSCTHHHHHHHHTTCEEEEECB-CTTTCSBCGGGTGGGC---CTTEEEEC---CBCGGGCCCC---HHHHHHHHHH
T ss_pred EECCCccHHHHHHHHHcCCEEEEEec-CCccCCcCHHHHHHhc---CcCCcEEE---eeCCccChhh---HHHHHHHHHH
Confidence 99999999999999999999999999 6666889999998877 56777776 8899997665 6667888999
Q ss_pred cCeEEEEeccCCCC-CCCCCCCchHHHHHHHHhcCcEEEEecC--cccccccCccceEEEEEcCCchhHHHHHHHHHHHH
Q psy14428 342 RHLYPFFDMAYLGL-TSGDFDKDAFSLRYFAKEVGQLCLAQSF--SKNMGLYGERVGTFSVLTPTSDETERIMSQLKILI 418 (583)
Q Consensus 342 ~~i~iI~De~Y~~l-~~~~~~~~~~~~~~~~~~~~~vi~i~S~--SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~ 418 (583)
+|++||+|++|... .+++ ... ...+ .+++.|| +|.++.+|. .|++++ ++ +++++++....
T Consensus 149 ~~~~li~D~a~~~g~~~~~--~~~-------~~~~-di~~~Sf~~~K~l~~~g~-gg~~~~--~~----~~l~~~~~~~~ 211 (367)
T 3nyt_A 149 YGIPVIEDAAQSFGASYKG--KRS-------CNLS-TVACTSFFPSAPLGCYGD-GGAIFT--ND----DELATAIRQIA 211 (367)
T ss_dssp TTCCBEEECTTTTTCEETT--EET-------TSSS-SEEEEECCTTSSSCCSSC-CEEEEE--SC----HHHHHHHHHHT
T ss_pred cCCEEEEECccccCCeECC--eec-------cCCC-CEEEEECCCCCcCCCcCc-eeEEEe--CC----HHHHHHHHHHH
Confidence 99999999999753 3332 111 0111 4788887 899986587 899998 65 46777777653
|
| >3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.9e-18 Score=182.70 Aligned_cols=181 Identities=16% Similarity=0.134 Sum_probs=138.0
Q ss_pred CHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcC-CCChhhHHHH----------h
Q psy14428 208 DAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPT-PTWNGHVRFC----------T 276 (583)
Q Consensus 208 ~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~-P~y~~~~~~~----------~ 276 (583)
..+|++.+++++ |.+....+|++ + +|++|+..+ +..++.+||+|++++ |.|..+...+ +
T Consensus 67 ~~~l~~~la~~~----g~~~~~~~i~~--~-sGt~Ai~~a---l~al~~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~ 136 (431)
T 3ht4_A 67 RDTLEKVYADVF----GAEAGLVRPQI--I-SGTHAISTA---LFGILRPGDELLYITGKPYDTLEEIVGVRGKGVGSFK 136 (431)
T ss_dssp HHHHHHHHHHHT----TCSEECCBTTS--C-SHHHHHHHH---HHTTCCTTCEEEECSSSCCTTHHHHTTSSSCSSSCSG
T ss_pred HHHHHHHHHHHh----CCCccccccee--e-CHHHHHHHH---HHHhCCCCCEEEEeCCCCchhHHHHHhhcccccchHH
Confidence 345555555554 44434445556 6 557898874 555677899999999 9999998665 4
Q ss_pred hcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeC-CCCCCCCCCCCHHHHHHHHHHHHh--cCeEEEEeccCC
Q psy14428 277 DSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQT-SSHNPTGVDLSEDQWRQLAVVVKQ--RHLYPFFDMAYL 353 (583)
Q Consensus 277 ~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~-~p~NPTG~~~s~~~~~~l~~~a~~--~~i~iI~De~Y~ 353 (583)
..|++++.++. ++ ++.+|++.+++.+ .+++++++++ +||||||.+++.+++++|+++|++ +|++||+||+|.
T Consensus 137 ~~G~~~~~v~~-~~-~~~~d~e~l~~~l---~~~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea~~ 211 (431)
T 3ht4_A 137 EYNIGYNAVPL-TE-GGLVDFEAVAAAI---HSNTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYG 211 (431)
T ss_dssp GGTCEEEECCB-CT-TSSBCHHHHHHHC---CTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTC
T ss_pred HcCCEEEEeCC-CC-CCCcCHHHHHhhc---CCCCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCCh
Confidence 47999999998 44 3678999999887 5678888888 699999999999999999999999 999999999999
Q ss_pred CCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccc-cCccceEEEEEcCCchhHHHHHHHHHHHHhc
Q psy14428 354 GLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGL-YGERVGTFSVLTPTSDETERIMSQLKILIRG 420 (583)
Q Consensus 354 ~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l-~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~ 420 (583)
.+.++. .+. ..+..++++|+||.+|. .+...||+++ + +++++++......
T Consensus 212 ~~~~~~---~~~-------~~g~Di~~~S~sK~lgg~~~~~GG~v~~--~-----~~li~~l~~~~~~ 262 (431)
T 3ht4_A 212 EFIEEQ---EPC-------HVGADLMAGSLIKNPGGGIVKTGGYIVG--K-----EQYVEACAYRLTS 262 (431)
T ss_dssp TTSSSC---CGG-------GTTCSEEEEETTSGGGTTTCSSCEEEEE--C-----HHHHHHHHHHHSC
T ss_pred hhccCC---Ccc-------ccCCeEEEcCccccCCCCCCCceEEEEe--c-----HHHHHHHHHHhcc
Confidence 998653 111 11345899999999652 1234499999 6 5899998875544
|
| >2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.79 E-value=9.8e-18 Score=177.95 Aligned_cols=164 Identities=12% Similarity=0.049 Sum_probs=132.3
Q ss_pred CCCCCCC--CCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHH--
Q psy14428 199 DHEYANI--GGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRF-- 274 (583)
Q Consensus 199 ~~~Y~~~--~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~-- 274 (583)
.+.|+.. .+..++|+.++++++. +++++ |+|+++|+.++ +..+..+||+|++++|+|......
T Consensus 47 ~~~y~~~~~~~~~~l~~~la~~~g~--------~~~~~--~~~gt~a~~~a---l~~l~~~gd~vi~~~~~~~~~~~~~~ 113 (412)
T 2cb1_A 47 GYVYARQKDPTAKALEERLKALEGA--------LEAVV--LASGQAATFAA---LLALLRPGDEVVAAKGLFGQTIGLFG 113 (412)
T ss_dssp SCSBTTTCCHHHHHHHHHHHHHHTC--------SEEEE--ESSHHHHHHHH---HHTTCCTTCEEEEETTCCHHHHHHHH
T ss_pred CcCcCCCCChHHHHHHHHHHHHhCC--------CcEEE--ECCHHHHHHHH---HHHHhCCCCEEEEeCCCchhHHHHHH
Confidence 4567644 5678999999999853 37888 99999999985 444567799999999999876554
Q ss_pred --HhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccC
Q psy14428 275 --CTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAY 352 (583)
Q Consensus 275 --~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y 352 (583)
++..|++++.++. |++.+++.+ .++++++++++|+||||.+++ +++|.++|+++|+++|+||+|
T Consensus 114 ~~~~~~g~~~~~~~~--------~~~~l~~~i---~~~~~~v~~~~~~n~~G~~~~---l~~i~~l~~~~~~~li~D~~~ 179 (412)
T 2cb1_A 114 QVLSLMGVTVRYVDP--------EPEAVREAL---SAKTRAVFVETVANPALLVPD---LEALATLAEEAGVALVVDNTF 179 (412)
T ss_dssp HTTTTTTCEEEEECS--------SHHHHHHHC---CTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECGG
T ss_pred HHHHHcCCEEEEECC--------CHHHHHHHh---ccCCeEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEECCC
Confidence 4557999988876 367777776 567899999999999999996 778899999999999999999
Q ss_pred CCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEE
Q psy14428 353 LGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSV 399 (583)
Q Consensus 353 ~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~ 399 (583)
..+.+.. .+ . ..+..+++.|+||.++.||.|+|++++
T Consensus 180 ~~~~~~~---~~--~-----~~~~di~~~S~~K~~~~~~~~~G~~~~ 216 (412)
T 2cb1_A 180 GAAGALC---RP--L-----AWGAHVVVESLTKWASGHGSVLGGAVL 216 (412)
T ss_dssp GTTTTSC---CG--G-----GGTCSEEEEETTTTTTCSSCCCCEEEE
T ss_pred ccccccC---Cc--c-----ccCCeEEEECCcccccCCCCcEEEEEE
Confidence 8873221 11 1 135789999999999989999999998
|
| >1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.4e-19 Score=187.78 Aligned_cols=189 Identities=12% Similarity=0.021 Sum_probs=129.6
Q ss_pred CChHHHHHHHHHhccC---CCCCCCC---CCC----CHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc-hhHHHHHHHH
Q psy14428 182 VLPSVKEAERRIYEKN---LDHEYAN---IGG----DAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG-SGSLRVGTAF 250 (583)
Q Consensus 182 ~~~~v~~a~~~~~~~~---~~~~Y~~---~~G----~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~-~~al~l~~~~ 250 (583)
+++.+.+++.+.+.+. ....|.. ..+ ..++|+.++++++ .. ++++|++ |+|+ ++|+.++
T Consensus 14 ~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g----~~-~~~~v~~--~~g~gt~al~~~--- 83 (360)
T 1w23_A 14 LPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQ----IP-NDYQILF--LQGGASLQFTML--- 83 (360)
T ss_dssp CCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHT----CC-TTEEEEE--ESSHHHHHHHHH---
T ss_pred CCHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHhC----CC-CCceEEE--ECCcchHHHHHH---
Confidence 5678888887766431 0111211 223 3566666776664 33 4679999 9999 9999986
Q ss_pred HHHhCC---CCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHH-HHHcCCCCcEEEEeCCCCCCCCCC
Q psy14428 251 LERFYP---GVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMME-DIKAMPERSILFLQTSSHNPTGVD 326 (583)
Q Consensus 251 l~~~~~---~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~-~l~~~~~~~~~i~i~~p~NPTG~~ 326 (583)
+..+.. +||.|+++.++|... ..++..| +++.+|+ +++++.+|++.+++ .+ .++++++++++||||||.+
T Consensus 84 ~~~l~~~~~~g~~vi~~~~~~~~~-~~~~~~g-~~~~v~~-~~~~~~~d~~~l~~~~i---~~~~k~v~~~~~~nptG~~ 157 (360)
T 1w23_A 84 PMNLLTKGTIGNYVLTGSWSEKAL-KEAKLLG-ETHIAAS-TKANSYQSIPDFSEFQL---NENDAYLHITSNNTIYGTQ 157 (360)
T ss_dssp HHHHCCTTCEEEEEECSHHHHHHH-HHHHTTS-EEEEEEE-CGGGTSCSCCCGGGCCC---CTTEEEEEEESEETTTTEE
T ss_pred HHHhcCCCCcccEEEecchhHHHH-HHHHHhC-CeEEeec-ccccCcCCccchHhhcc---CCCCCEEEEeCCCCCccee
Confidence 233333 366777777766543 3467789 9999998 54233478888776 55 5678999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchh
Q psy14428 327 LSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDE 406 (583)
Q Consensus 327 ~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~ 406 (583)
++ ++ ++++|++||+||+|..+...- .+ ...+ +++.|+||.+|++| +||+++ +
T Consensus 158 ~~--~i------~~~~~~~li~D~a~~~~~~~~------~~----~~~d--i~~~s~sK~~~~~G--~G~~~~--~---- 209 (360)
T 1w23_A 158 YQ--NF------PEINHAPLIADMSSDILSRPL------KV----NQFG--MIYAGAQKNLGPSG--VTVVIV--K---- 209 (360)
T ss_dssp CS--SC------CCCCSSCEEEECTTTTTSSCC------CG----GGCS--EEEEETTTTTSCTT--CEEEEE--E----
T ss_pred cc--cc------cccCCceEEEechhhcCCCCc------Cc----ccCC--EEEEEcccccCCCC--cEEEEE--c----
Confidence 87 22 238999999999998765321 11 1122 78999999999776 999999 6
Q ss_pred HHHHHHHHH
Q psy14428 407 TERIMSQLK 415 (583)
Q Consensus 407 ~~~li~~l~ 415 (583)
+++++++.
T Consensus 210 -~~~~~~~~ 217 (360)
T 1w23_A 210 -KDLLNTKV 217 (360)
T ss_dssp -HHHHCSCC
T ss_pred -HHHHhhcc
Confidence 45655443
|
| >2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.4e-17 Score=173.67 Aligned_cols=193 Identities=12% Similarity=0.066 Sum_probs=148.0
Q ss_pred CChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHh---CCCC
Q psy14428 182 VLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERF---YPGV 258 (583)
Q Consensus 182 ~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~---~~~g 258 (583)
+++.+.+++.+.+... .|.+..+..+||++++++++. +++++ |+|+++|+.++ +..+ ..+|
T Consensus 11 ~~~~v~~a~~~~~~~~---~~~~~~~~~~l~~~la~~~~~--------~~v~~--~~ggt~al~~~---~~~~~~~~~~g 74 (375)
T 2fnu_A 11 LDKEDKKAVLEVLNSK---QLTQGKRSLLFEEALCEFLGV--------KHALV--FNSATSALLTL---YRNFSEFSADR 74 (375)
T ss_dssp CCHHHHHHHHHHHTSS---CCSSSHHHHHHHHHHHHHHTC--------SEEEE--ESCHHHHHHHH---HHHSSCCCTTS
T ss_pred CCHHHHHHHHHHHHcC---cccCChHHHHHHHHHHHHhCC--------CeEEE--eCCHHHHHHHH---HHHhcccCCCC
Confidence 5678888888877542 245566789999999999953 28999 99999999985 4455 6679
Q ss_pred CEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHH
Q psy14428 259 KTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVV 338 (583)
Q Consensus 259 d~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~ 338 (583)
|+|++++|+|..+...++..|++++.+++ +++ ..+|++.+++.+ .++++++++++| ||.+.+ +++|.++
T Consensus 75 d~Vl~~~~~~~~~~~~~~~~g~~~~~~~~-~~~-~~~d~~~l~~~i---~~~~~~v~~~~~---tG~~~~---l~~i~~l 143 (375)
T 2fnu_A 75 NEIITTPISFVATANMLLESGYTPVFAGI-KND-GNIDELALEKLI---NERTKAIVSVDY---AGKSVE---VESVQKL 143 (375)
T ss_dssp CEEEECSSSCTHHHHHHHHTTCEEEECCB-CTT-SSBCGGGSGGGC---CTTEEEEEEECG---GGCCCC---HHHHHHH
T ss_pred CEEEECCCccHhHHHHHHHCCCEEEEecc-CCC-CCCCHHHHHhhc---CcCceEEEEeCC---cCCccC---HHHHHHH
Confidence 99999999999999999999999999998 554 368999888776 457788777766 999987 5677888
Q ss_pred HHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCc--ccccccCccceEEEEEcCCchhHHHHHHHHHH
Q psy14428 339 VKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFS--KNMGLYGERVGTFSVLTPTSDETERIMSQLKI 416 (583)
Q Consensus 339 a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~S--K~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~ 416 (583)
|+++|++||+||+|....... . ..+ ...+ .+++.||| |.++. | +|++++ .+. +++++++..
T Consensus 144 ~~~~~~~li~D~a~~~~~~~~---~-~~~----~~~~-~i~~~s~s~~K~~~~-g--~g~~~~--~~~---~~~~~~~~~ 206 (375)
T 2fnu_A 144 CKKHSLSFLSDSSHALGSEYQ---N-KKV----GGFA-LASVFSFHAIKPITT-A--EGGAVV--TND---SELHEKMKL 206 (375)
T ss_dssp HHHHTCEEEEECTTCTTCEET---T-EET----TSSS-SEEEEECCTTSSSCC-S--SCEEEE--ESC---HHHHHHHHH
T ss_pred HHHcCCEEEEECccccCCeEC---C-eec----cccC-CeEEEeCCCCCCccc-c--CceEEE--eCC---HHHHHHHHH
Confidence 999999999999998655321 0 011 1112 48888999 99974 7 788887 321 367777765
Q ss_pred HH
Q psy14428 417 LI 418 (583)
Q Consensus 417 ~~ 418 (583)
..
T Consensus 207 ~~ 208 (375)
T 2fnu_A 207 FR 208 (375)
T ss_dssp HT
T ss_pred HH
Confidence 43
|
| >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=5.8e-18 Score=180.99 Aligned_cols=189 Identities=13% Similarity=0.110 Sum_probs=143.7
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHH----HhhcCCe
Q psy14428 206 GGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRF----CTDSRLN 281 (583)
Q Consensus 206 ~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~----~~~~G~~ 281 (583)
....+||++++++++. ++.|++ ++|+ +|+.++ +..+..+||+|++++|+|..+... ++..|++
T Consensus 114 ~~~~~l~~~lA~l~g~-------~~~v~~--~sG~-~Ai~~a---l~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~ 180 (445)
T 1qgn_A 114 PTTVVLEEKISALEGA-------ESTLLM--ASGM-CASTVM---LLALVPAGGHIVTTTDCYRKTRIFIETILPKMGIT 180 (445)
T ss_dssp HHHHHHHHHHHHHHTC-------SEEEEE--SCHH-HHHHHH---HHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGTCE
T ss_pred hHHHHHHHHHHHHhCC-------CcEEEe--CCHH-HHHHHH---HHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCE
Confidence 3446899999999852 256666 7766 899885 444566799999999999987764 5667999
Q ss_pred EEEEecccCCCCCCChhhHHHHHHcCCCCc-EEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCC
Q psy14428 282 VGAYRYFDNKTNGLDFAGMMEDIKAMPERS-ILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDF 360 (583)
Q Consensus 282 ~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~-~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~ 360 (583)
++.++. + |++.+++.+. +++ +++++++|+||||.+.+ +++|.++|+++|+++|+|++|.......
T Consensus 181 v~~v~~-~------d~~~l~~ai~---~~tv~lV~le~p~NptG~v~d---l~~I~~la~~~g~~livD~a~~~~~~~~- 246 (445)
T 1qgn_A 181 ATVIDP-A------DVGALELALN---QKKVNLFFTESPTNPFLRCVD---IELVSKLCHEKGALVCIDGTFATPLNQK- 246 (445)
T ss_dssp EEEECS-S------CHHHHHHHHH---HSCEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCC-
T ss_pred EEEeCC-C------CHHHHHHHhc---cCCCCEEEEeCCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCcccccCC-
Confidence 998876 2 7889988884 457 89999999999999997 5677888999999999999998654321
Q ss_pred CCchHHHHHHHHhcCcEEEEecCcccccccC-ccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhC
Q psy14428 361 DKDAFSLRYFAKEVGQLCLAQSFSKNMGLYG-ERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILS 438 (583)
Q Consensus 361 ~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~G-lRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~ 438 (583)
++ ..+..+++.|+||.++..| +|+||+++ + +++++++...........+.+..+++...++
T Consensus 247 -----~~-----~~g~Div~~S~sK~~gg~gd~~~G~l~~--~-----~~l~~~l~~~~~~~g~~~~~~~a~~~~~~l~ 308 (445)
T 1qgn_A 247 -----AL-----ALGADLVLHSATKFLGGHNDVLAGCISG--P-----LKLVSEIRNLHHILGGALNPNAAYLIIRGMK 308 (445)
T ss_dssp -----TT-----TTTCSEEEECTTTTTTCSSSCCCEEEEE--C-----HHHHHHHHHHHHHHCCCCCHHHHHHHHHHGG
T ss_pred -----cc-----ccCCEEEEECCcccccccccceEEEEEE--C-----HHHHHHHHHHHHHhCCCCCHHHHHHHHHhHH
Confidence 11 1245689999999998555 48999999 6 5788888776554455566666666655554
|
| >3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.5e-18 Score=183.81 Aligned_cols=207 Identities=15% Similarity=0.107 Sum_probs=130.7
Q ss_pred CChHHHHHHHHHhccCCCCCC------CCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhC
Q psy14428 182 VLPSVKEAERRIYEKNLDHEY------ANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFY 255 (583)
Q Consensus 182 ~~~~v~~a~~~~~~~~~~~~Y------~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~ 255 (583)
.++.+.+++.+.+.+....+| .......++++.+.+.+.+..| +++++|++ ++| ++|+.++ +..+.
T Consensus 37 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g--~~~~~i~~--~sG-t~a~~~~---~~~~~ 108 (417)
T 3n0l_A 37 TLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFN--CKFANVQP--NSG-SQANQGV---YAALI 108 (417)
T ss_dssp CCHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHT--CSEEECCC--SSH-HHHHHHH---HHHHS
T ss_pred CCHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHhC--CCCcceEe--ccH-HHHHHHH---HHHhc
Confidence 357888887766633211222 2233334555533333333222 35677888 888 7999985 44557
Q ss_pred CCCCEEEEcCCCChhhHH---HHhhc--CCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHH
Q psy14428 256 PGVKTVYFPTPTWNGHVR---FCTDS--RLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSED 330 (583)
Q Consensus 256 ~~gd~Vlv~~P~y~~~~~---~~~~~--G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~ 330 (583)
.+||+|++++|+|..+.. .+... +..++.+++ + +++.+|++.+++.+.+ .+++++++++|+| |.+++
T Consensus 109 ~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~-~~~~~d~~~l~~~i~~--~~~~~v~~~~~~~--G~~~~-- 180 (417)
T 3n0l_A 109 NPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGV-E-LDGRIDYEKVREIAKK--EKPKLIVCGASAY--ARVID-- 180 (417)
T ss_dssp CTTCEEEEECC----------------CCSEEEEECC-C-TTSSCCHHHHHHHHHH--HCCSEEEECCSSC--CSCCC--
T ss_pred CCCCEEEecccccccccchhhhhhhhcceeeeEeccC-C-CCCCcCHHHHHHHHHh--cCCeEEEECCccc--CccCC--
Confidence 779999999999987654 33333 445666666 4 4567899999998852 3567777888887 77777
Q ss_pred HHHHHHHHHHhcCeEEEEeccC-CCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHH
Q psy14428 331 QWRQLAVVVKQRHLYPFFDMAY-LGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETER 409 (583)
Q Consensus 331 ~~~~l~~~a~~~~i~iI~De~Y-~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~ 409 (583)
+++|.++|+++|++||+||++ .++.+.+. .+..+ ....+++.||||.+ +|+|+||+++ ++ ++
T Consensus 181 -l~~i~~l~~~~~~~li~Dea~~~g~~~~~~--~~~~~------~~~di~~~s~sK~l--~g~~~G~~~~--~~----~~ 243 (417)
T 3n0l_A 181 -FAKFREIADEIGAYLFADIAHIAGLVVAGE--HPSPF------PYAHVVSSTTHKTL--RGPRGGIIMT--ND----EE 243 (417)
T ss_dssp -HHHHHHHHHHHTCEEEEECTTTHHHHHTTS--SCCCT------TTCSEEEEESSTTT--CSCSCEEEEE--SC----HH
T ss_pred -HHHHHHHHHHcCCEEEEECccchhhhhccc--CCCcc------ccceEEEeeCcccc--CCCCeeEEEE--CC----HH
Confidence 778899999999999999995 33333221 01011 12358899999987 7999999999 64 36
Q ss_pred HHHHHHHHHhcc
Q psy14428 410 IMSQLKILIRGF 421 (583)
Q Consensus 410 li~~l~~~~~~~ 421 (583)
+++.+.......
T Consensus 244 ~~~~~~~~~~~~ 255 (417)
T 3n0l_A 244 LAKKINSAIFPG 255 (417)
T ss_dssp HHHHHHHHHTTT
T ss_pred HHHHHhhhhCCc
Confidence 788877665433
|
| >3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=5.8e-18 Score=179.03 Aligned_cols=183 Identities=15% Similarity=0.168 Sum_probs=141.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEe-cCCchhHHHHHHHHHHHhCCCCCEEEEcC-CCChhhHHH---
Q psy14428 200 HEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQ-GISGSGSLRVGTAFLERFYPGVKTVYFPT-PTWNGHVRF--- 274 (583)
Q Consensus 200 ~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~-t~G~~~al~l~~~~l~~~~~~gd~Vlv~~-P~y~~~~~~--- 274 (583)
+.|+. .|...|++.+|++++. +..++++ +++|++|+.++ +..++.+||+|++++ |.|..+...
T Consensus 54 ~~y~~-~~~~~Le~~lA~l~g~--------e~alv~p~~~sGt~Ai~~a---l~all~~GD~Vl~~~~~~y~~~~~~~~~ 121 (409)
T 3jzl_A 54 YGYDD-EGRDTLERVYATVFKT--------EAALVRPQIISGTHAISTV---LFGILRPDDELLYITGQPYDTLEEIVGI 121 (409)
T ss_dssp TCTTC-HHHHHHHHHHHHHHTC--------SEEEEETTSCSHHHHHHHH---HHHHCCTTCEEEECSSSCCTTHHHHHTS
T ss_pred CCCCh-hHHHHHHHHHHHHhCC--------CcEEEECCCccHHHHHHHH---HHHhcCCCCEEEEeCCCCcHhHHHHHhc
Confidence 34543 4678999999999863 2333322 67788998874 445677799999998 999998854
Q ss_pred -------HhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCC----CCCCCCCCCCHHHHHHHHHHHHh--
Q psy14428 275 -------CTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTS----SHNPTGVDLSEDQWRQLAVVVKQ-- 341 (583)
Q Consensus 275 -------~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~----p~NPTG~~~s~~~~~~l~~~a~~-- 341 (583)
++..|++++.+++ ++ ++.+|++.+++++ .++++++++++ |+||||.+ .++++|+++|++
T Consensus 122 ~g~~~~~l~~~G~~~~~v~~-~~-~g~~d~e~l~~ai---~~~tklV~i~~s~g~p~nptg~v---~~l~~I~~la~~~~ 193 (409)
T 3jzl_A 122 RKQGQGSLKDFHIGYSSVPL-LE-NGDVDFPRIAKKM---TPKTKMIGIQRSRGYADRPSFTI---EKIKEMIVFVKNIN 193 (409)
T ss_dssp SSSSSSCTGGGTCEEEECCC-CT-TSCCCHHHHHHHC---CTTEEEEEEECSCTTSSSCCCCH---HHHHHHHHHHHHHC
T ss_pred ccchhhHHHHcCCEEEEeCC-CC-CCCcCHHHHHHhc---cCCCeEEEEECCCCCCCCCcCcc---ccHHHHHHHHHhhC
Confidence 4667999999998 44 4678999999887 56789999999 99999854 678999999999
Q ss_pred cCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccC-ccceEEEEEcCCchhHHHHHHHHHHHHh
Q psy14428 342 RHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYG-ERVGTFSVLTPTSDETERIMSQLKILIR 419 (583)
Q Consensus 342 ~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~G-lRiG~lv~~~p~~~~~~~li~~l~~~~~ 419 (583)
+++++|+|++|..+.+.. .+. ..+..++++|+||.++.+| .+.||+++ + ++++++++....
T Consensus 194 ~~~~livD~a~~~~~~~~---~p~-------~~g~Div~~S~sK~lgg~~~~~GG~v~~--~-----~~li~~l~~~~~ 255 (409)
T 3jzl_A 194 PEVIVFVDNCYGEFVEYQ---EPP-------EVGADIIAGSLIKNPGGGLAKTGGYIAG--K-----EALVDLCGYRLT 255 (409)
T ss_dssp TTCEEEEECTTCTTTSSC---CSG-------GGTCSEEEEETTSGGGTTTCSSCEEEEE--C-----HHHHHHHHHHHS
T ss_pred CCCEEEEeCCcccccccC---Ccc-------ccCCeEEEECccccCCccCCceEEEEEe--C-----HHHHHHHHHHhc
Confidence 999999999999887542 111 1234689999999998666 45689998 6 589999987553
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.2e-18 Score=187.16 Aligned_cols=286 Identities=10% Similarity=0.037 Sum_probs=174.8
Q ss_pred CCccccCCccccCCCCCCCCChHHH-H-HHHH---HhccCCCCCCC---CCCCCHHHHHHHHHHHhCCCCCCCCCCCeEE
Q psy14428 163 PKKMNLGVGAYRGEDGKPYVLPSVK-E-AERR---IYEKNLDHEYA---NIGGDAKFCKLAAQLAYGEDFPAFKDNRLAI 234 (583)
Q Consensus 163 ~~~i~l~~g~~~~~~~~p~~~~~v~-~-a~~~---~~~~~~~~~Y~---~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i 234 (583)
...+|+..+.+....|. .++.+. + ++.+ ..... ..|+ +..-..+|++.+++++. ...+++|++
T Consensus 54 ~~ylD~~~~~~~~~lG~--~~p~v~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~la~~la~~~~-----~~~~~~v~~ 124 (449)
T 2cjg_A 54 RRYLDMFTFVASSALGM--NPPALVDDREFHAELMQAALN--KPSNSDVYSVAMARFVETFARVLG-----DPALPHLFF 124 (449)
T ss_dssp CEEEESSHHHHTCSSCB--SCHHHHTCHHHHHHHHHHHTC--CCCTTTCCCHHHHHHHHHHHHHHC-----CTTCCEEEE
T ss_pred cEEEEccCCccccCCCC--CCHHHHHHHHHHHHHHHHHhc--CCCCcccCCHHHHHHHHHHHHhcC-----CCCCCEEEE
Confidence 45678887777555553 246777 7 7776 54432 1222 22223566666776664 145789999
Q ss_pred EecCCchhHHHHHHHHHHHhC-----------CCCCEEEEcCCCChhhHHHHhh-cC--------C-----eEEEEeccc
Q psy14428 235 VQGISGSGSLRVGTAFLERFY-----------PGVKTVYFPTPTWNGHVRFCTD-SR--------L-----NVGAYRYFD 289 (583)
Q Consensus 235 ~~t~G~~~al~l~~~~l~~~~-----------~~gd~Vlv~~P~y~~~~~~~~~-~G--------~-----~~~~v~~~d 289 (583)
|+|+++|++.+..++..+. ++||.|++.+|+|..+...... .| . .++.+|..|
T Consensus 125 --~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 202 (449)
T 2cjg_A 125 --VEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMR 202 (449)
T ss_dssp --ESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCCCCEECCCCCC
T ss_pred --eCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchhhhcCCchhhcccCCCCCCCcEEEcCCC
Confidence 9999999998754443222 1389999999999876442211 11 1 455666522
Q ss_pred C-CCC-------CCChhhHHHHHHcCCCCcEEEEeCCCCCCCC-CCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCC
Q psy14428 290 N-KTN-------GLDFAGMMEDIKAMPERSILFLQTSSHNPTG-VDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDF 360 (583)
Q Consensus 290 ~-~~~-------g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG-~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~ 360 (583)
. .+. ..+++.+++.+++..+++++++++..||||| .+++++++++|.++|++||+++|+||+|.+|.+.+.
T Consensus 203 ~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~ 282 (449)
T 2cjg_A 203 PGLDEPAMAALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTGT 282 (449)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHSTTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSS
T ss_pred chhhccccchhhHHHHHHHHHHHHhcCCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccccCCCccCc
Confidence 0 000 1244557777754345677776665579999 599999999999999999999999999999876551
Q ss_pred CCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHH-----HHHhccccCCChHHHHHHHH
Q psy14428 361 DKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLK-----ILIRGFYSNPPIHGARIVTE 435 (583)
Q Consensus 361 ~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~-----~~~~~~~~~~s~~~q~~~~~ 435 (583)
......+ +....+ .||||.+ |+||+++ + +++++.+. .......++.++++|.++..
T Consensus 283 ---~~~~~~~-~~~~di---~t~sK~l-----~iG~~~~--~-----~~~~~~l~~~~~~~~~~~~t~~~n~~~~~aa~a 343 (449)
T 2cjg_A 283 ---AWAYQQL-DVAPDI---VAFGKKT-----QVCGVMA--G-----RRVDEVADNVFAVPSRLNSTWGGNLTDMVRARR 343 (449)
T ss_dssp ---SSTHHHH-TCCCSE---EEECGGG-----SSEEEEE--C-----GGGGGSTTCTTTSTTSSCCSSSSCHHHHHHHHH
T ss_pred ---ceeeccc-CCCceE---EEecCcc-----cEEEEEE--C-----HHHhhhhhhcccCCcccccCCCCCHHHHHHHHH
Confidence 1122221 222333 3799987 8999999 6 35666422 12222356778899998887
Q ss_pred HhC---ChhhhhhhhhHHH-HHHHHHHHHhh--c-cCCCccchhhHHHHh
Q psy14428 436 ILS---DPKLKAQCDETER-IMSQLKILIRG--F-YSNPPIHGARIVTEI 478 (583)
Q Consensus 436 ~l~---~~~~~~~~~~~~~-~~~~l~~~~r~--~-~~~~p~~g~~i~~~~ 478 (583)
.++ ++.+.++..+... +.+.++.+... . +...+..|.++++.+
T Consensus 344 al~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~~g~~~~~~~ 393 (449)
T 2cjg_A 344 ILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLDPRGRGLMCAFSL 393 (449)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHSTTTSEEEEEETTEEEEEC
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHhhCCCceeeEeeccEEEEEEE
Confidence 775 3334333333332 23333332111 1 222445677776544
|
| >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.78 E-value=2.2e-17 Score=174.86 Aligned_cols=196 Identities=10% Similarity=-0.013 Sum_probs=130.7
Q ss_pred CCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCC-----C---CCCCHHHHHHHHHHHhCCCCCCCCCCCeEE
Q psy14428 163 PKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYA-----N---IGGDAKFCKLAAQLAYGEDFPAFKDNRLAI 234 (583)
Q Consensus 163 ~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~-----~---~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i 234 (583)
++.+.|..+... .+++.+.+++.+.+... ...+. + .....++|+++++++ | +++++|++
T Consensus 27 ~~~~yld~~~~~------~~~~~v~~a~~~~l~~~-~~~~~~~~~~~~~~~~~~~~l~~~la~~~----g--~~~~~v~~ 93 (416)
T 1qz9_A 27 EGVIYLDGNSLG------ARPVAALARAQAVIAEE-WGNGLIRSWNSAGWRDLSERLGNRLATLI----G--ARDGEVVV 93 (416)
T ss_dssp TTCEECCTTTSC------CCBTTHHHHHHHHHHTC-CCCCGGGHHHHTSGGGHHHHHHHHHHTTT----T--CCTTSEEE
T ss_pred CCeEeecCCCcC------CCcHHHHHHHHHHHHHH-HhccCccccchhhHHHHHHHHHHHHHHHc----C--CCcccEEE
Confidence 345566655432 14567777777766532 11111 0 133456666666665 3 35789999
Q ss_pred EecCCchhHHHHHHHHHHHhC---CCCCE-EEEcCCCChhhHHHH----hhc--CCeEEEEecccCCCCCCChhhHHHHH
Q psy14428 235 VQGISGSGSLRVGTAFLERFY---PGVKT-VYFPTPTWNGHVRFC----TDS--RLNVGAYRYFDNKTNGLDFAGMMEDI 304 (583)
Q Consensus 235 ~~t~G~~~al~l~~~~l~~~~---~~gd~-Vlv~~P~y~~~~~~~----~~~--G~~~~~v~~~d~~~~g~d~~~l~~~l 304 (583)
|+|+++++.++...+..+. .+||+ |+++.++|+.+...+ +.. |++++.+|+ ++.+++.+
T Consensus 94 --~~g~t~al~~al~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~---------~~~l~~~i 162 (416)
T 1qz9_A 94 --TDTTSINLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLRLVDS---------PEELPQAI 162 (416)
T ss_dssp --CSCHHHHHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEEEESS---------GGGHHHHC
T ss_pred --eCChhHHHHHHHHhhcccccccCCCCcEEEEcCCCCCchHHHHHHHHHHhcCCceEEEeCc---------HHHHHHHh
Confidence 9999999987533322120 45886 455556788654433 223 898888764 45676666
Q ss_pred HcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCc
Q psy14428 305 KAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFS 384 (583)
Q Consensus 305 ~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~S 384 (583)
.++++++++++|+||||.+++ +++|.++|+++|++||+||+|..-.. + ..+..+ +..+++.|+|
T Consensus 163 ---~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~g~~-----~-~~~~~~----~~d~~~~s~~ 226 (416)
T 1qz9_A 163 ---DQDTAVVMLTHVNYKTGYMHD---MQALTALSHECGALAIWDLAHSAGAV-----P-VDLHQA----GADYAIGCTY 226 (416)
T ss_dssp ---STTEEEEEEESBCTTTCBBCC---HHHHHHHHHHHTCEEEEECTTTTTTS-----C-CCHHHH----TCSEEEECSS
T ss_pred ---CCCceEEEEeccccCcccccC---HHHHHHHHHHcCCEEEEEccccccCc-----C-CChhhc----CCCEEEecCc
Confidence 457899999999999999998 67788899999999999999973211 1 122221 3458889999
Q ss_pred ccccccCccc-eEEEE
Q psy14428 385 KNMGLYGERV-GTFSV 399 (583)
Q Consensus 385 K~~~l~GlRi-G~lv~ 399 (583)
|.++ +|.|+ ||+++
T Consensus 227 K~l~-~g~~~~g~l~~ 241 (416)
T 1qz9_A 227 KYLN-GGPGSQAFVWV 241 (416)
T ss_dssp STTC-CCTTCCCEEEE
T ss_pred ccCC-CCCCCeEEEEE
Confidence 9985 78888 99999
|
| >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.5e-17 Score=176.54 Aligned_cols=189 Identities=13% Similarity=0.053 Sum_probs=141.4
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHH----hhcCC
Q psy14428 205 IGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFC----TDSRL 280 (583)
Q Consensus 205 ~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~----~~~G~ 280 (583)
..-..+|++.+|++++. +++++ ++||++|+.++ +..++.+||+|++++|.|......+ +..|+
T Consensus 81 ~p~~~~le~~lA~l~g~--------~~~i~--~ssGt~Ai~~a---l~~l~~~Gd~Vi~~~~~y~~~~~~~~~~l~~~G~ 147 (415)
T 2fq6_A 81 TLTHFSLQQAMCELEGG--------AGCVL--FPCGAAAVANS---ILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGV 147 (415)
T ss_dssp CHHHHHHHHHHHHHHTC--------SEEEE--ESSHHHHHHHH---HHTTCCTTCEEEEETTSCHHHHHHHHHTGGGGTC
T ss_pred CchHHHHHHHHHHHhCC--------CeEEE--eCCHHHHHHHH---HHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCc
Confidence 33457799999999853 34666 77889999884 4556677999999999999887654 45799
Q ss_pred eEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHh--cCeEEEEeccCCCCCCC
Q psy14428 281 NVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQ--RHLYPFFDMAYLGLTSG 358 (583)
Q Consensus 281 ~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~--~~i~iI~De~Y~~l~~~ 358 (583)
++..++. + |++.+++++ .++++++++++|+||||.+++ +++|+++|++ +|+++|+|++|......
T Consensus 148 ~v~~v~~-~------d~~~le~ai---~~~tklV~~e~~~NptG~v~d---l~~I~~la~~~~~g~~livD~a~a~~~~~ 214 (415)
T 2fq6_A 148 TTSWFDP-L------IGADIVKHL---QPNTKIVFLESPGSITMEVHD---VPAIVAAVRSVVPDAIIMIDNTWAAGVLF 214 (415)
T ss_dssp EEEEECT-T------CGGGGGGGC---CTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHCTTCEEEEECTTTTTTSS
T ss_pred EEEEECC-C------CHHHHHHhh---ccCCcEEEEECCCCCCCEeec---HHHHHHHHHhhcCCCEEEEECCCcccccC
Confidence 9988866 1 677777766 567899999999999999997 5677888999 99999999999865432
Q ss_pred CCCCchHHHHHHHHhcCcEEEEecCcccccccCcc-ceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHh
Q psy14428 359 DFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGER-VGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEIL 437 (583)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlR-iG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l 437 (583)
. ++ + .+..+++.|+||.++.+|.+ +||+++ ++ ++++++...........+...++++...+
T Consensus 215 ~------p~----~-~g~Div~~S~sK~lg~~g~~~~G~l~~--~~-----~~~~~l~~~~~~~G~~~~~~~a~~~~~~l 276 (415)
T 2fq6_A 215 K------AL----D-FGIDVSIQAATKYLVGHSDAMIGTAVC--NA-----RCWEQLRENAYLMGQMVDADTAYITSRGL 276 (415)
T ss_dssp C------GG----G-GTCSEEEEETTTTTTCSSSCCCEEEEE--CT-----TTHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred C------cc----c-cCCeEEEEeCccccCCCCCceEEEEEe--CH-----HHHHHHHHHHHhcCCCCCHHHHHHHHhhh
Confidence 1 11 1 24568999999999988876 589888 53 46677766554444455665555544444
|
| >1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* | Back alignment and structure |
|---|
Probab=99.77 E-value=2.7e-18 Score=185.72 Aligned_cols=205 Identities=11% Similarity=0.066 Sum_probs=152.8
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHH-hCCCCC-----EEEEcCCCChhhHHHHhhc
Q psy14428 205 IGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLER-FYPGVK-----TVYFPTPTWNGHVRFCTDS 278 (583)
Q Consensus 205 ~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~-~~~~gd-----~Vlv~~P~y~~~~~~~~~~ 278 (583)
.+|..++++++++++.+..|.+. .+++ |+|+++|+..+..+++. +..+|| +|++++|+|+.+...++..
T Consensus 102 ~~g~~~l~~~l~~~la~~~g~~~---~~~~--~~ggt~a~~~al~~~~~~~~~~Gd~~~r~~Vlv~~~~h~~~~~~~~~~ 176 (474)
T 1wyu_B 102 AQGALRLMWELGEYLKALTGMDA---ITLE--PAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATASMA 176 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCSE---EECC--CSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHHHCCCc---eeec--ChHHHHHHHHHHHHHHHHHHhcCCccCCCEEEEeCCcChhhHHHHHHC
Confidence 67888899999888887666542 3556 89999998874333322 123477 9999999999999999999
Q ss_pred CCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCC
Q psy14428 279 RLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSG 358 (583)
Q Consensus 279 G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~ 358 (583)
|++++.+|+ ++ ++.+|++.+++.+ .++++++++++| ||||.+. +++++|+++|+++|+++|+||+|....++
T Consensus 177 G~~vv~v~~-~~-~~~~d~~~L~~~i---~~~t~~v~~~~p-n~~G~~~--~~l~~i~~l~~~~g~~li~Dea~~~~~~g 248 (474)
T 1wyu_B 177 GYQVREIPS-GP-EGEVDLEALKREL---GPHVAALMLTNP-NTLGLFE--RRILEISRLCKEAGVQLYYDGANLNAIMG 248 (474)
T ss_dssp TCEEEEECB-CT-TSSBCHHHHHHHC---STTEEEEEECSS-CTTSCCC--TTHHHHHHHHHHHTCEEEEEGGGGGGTTT
T ss_pred CCEEEEecC-CC-CCCcCHHHHHHhh---CCCceEEEEECC-CCCcccC--CCHHHHHHHHHHcCCEEEEeCchhhhhcc
Confidence 999999998 54 4678999999887 567889999998 7999873 46889999999999999999999877653
Q ss_pred CCCCchHHHHHHHHhcCcEEEEecCccccccc-C---ccceEEEEEcCCchhHHHHHHHHHH-HH---------------
Q psy14428 359 DFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLY-G---ERVGTFSVLTPTSDETERIMSQLKI-LI--------------- 418 (583)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~-G---lRiG~lv~~~p~~~~~~~li~~l~~-~~--------------- 418 (583)
. . .... .+..+++.|++|+|++| | .|+||+++ ++ ++++.+.. ..
T Consensus 249 ~--~---~~~~----~g~di~~~s~~K~~~~p~g~gG~~~G~~~~--~~-----~l~~~l~~~~~~~~g~~~~~~~~~~~ 312 (474)
T 1wyu_B 249 W--A---RPGD----MGFDVVHLNLHKTFTVPHGGGGPGSGPVGV--KA-----HLAPYLPVPLVERGEEGFYLDFDRPK 312 (474)
T ss_dssp T--C---CHHH----HTCSEEECCTTTTTCCCCTTSCCCCCCEEE--CG-----GGGGGCCSCEEEECSSCEEEECCCTT
T ss_pred C--C---Cccc----CCCcEEEEeCccccccCCCCCCCCeEEEEE--cH-----HHHHhCCCCeeeccCCeeEecccCcc
Confidence 2 1 1111 24567888999999887 5 59999999 63 45555531 10
Q ss_pred ---hccccCCChHHHHHHHHHhC
Q psy14428 419 ---RGFYSNPPIHGARIVTEILS 438 (583)
Q Consensus 419 ---~~~~~~~s~~~q~~~~~~l~ 438 (583)
+....+.+.+.+.++..++.
T Consensus 313 ~~~~~~~~~~~~~~~~aa~~~l~ 335 (474)
T 1wyu_B 313 SIGRVRSFYGNFLALVRAWAYIR 335 (474)
T ss_dssp CCCCSSSTTSCHHHHHHHHHHHH
T ss_pred cCcccccCcCcHHHHHHHHHHHH
Confidence 01122456777888777775
|
| >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.9e-18 Score=178.21 Aligned_cols=193 Identities=18% Similarity=0.102 Sum_probs=147.6
Q ss_pred ChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHh-CCCCCEE
Q psy14428 183 LPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERF-YPGVKTV 261 (583)
Q Consensus 183 ~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~-~~~gd~V 261 (583)
.+.+.+++.+.+... .|.+..+..+||++++++++. +++++ |+||++|+.++ +..+ ..+||+|
T Consensus 16 ~~~~~~a~~~~~~~~---~~~~~~~~~~l~~~la~~~~~--------~~~i~--~~sgt~al~~~---l~~l~~~~gd~V 79 (373)
T 3frk_A 16 EYEIKFKFEEIYKRN---WFILGDEDKKFEQEFADYCNV--------NYCIG--CGNGLDALHLI---LKGYDIGFGDEV 79 (373)
T ss_dssp HHHHHHHHHHHHHHT---CCSSSHHHHHHHHHHHHHHTS--------SEEEE--ESCHHHHHHHH---HHHTTCCTTCEE
T ss_pred CHHHHHHHHHHHHCC---CccCCchHHHHHHHHHHHhCC--------CeEEE--eCCHHHHHHHH---HHHcCCCCcCEE
Confidence 456777777666542 477788999999999999964 36888 99999999985 4455 6779999
Q ss_pred EEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHh
Q psy14428 262 YFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQ 341 (583)
Q Consensus 262 lv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~ 341 (583)
+++.|+|..+...++..|++++.+++ +++++++|++.+++.+ .+++++++ |+||||...+ +++|.++|++
T Consensus 80 i~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~d~~~l~~~l---~~~~~~v~---~~n~~G~~~~---l~~i~~l~~~ 149 (373)
T 3frk_A 80 IVPSNTFIATALAVSYTGAKPIFVEP-DIRTYNIDPSLIESAI---TEKTKAII---AVHLYGQPAD---MDEIKRIAKK 149 (373)
T ss_dssp EEETTSCTHHHHHHHHHSCEEEEECE-ETTTTEECGGGTGGGC---CTTEEEEE---EECCTTCCCC---HHHHHHHHHH
T ss_pred EECCCCcHHHHHHHHHcCCEEEEEec-cccccCcCHHHHHHhc---CCCCeEEE---EECCCcCccc---HHHHHHHHHH
Confidence 99999999999999999999999999 6666888999998876 55777776 7889999876 5577888999
Q ss_pred cCeEEEEeccCCCCCC-CCCCCchHHHHHHHHhcCcEEEEecCc--ccccccCccceEEEEEcCCchhHHHHHHHHHHHH
Q psy14428 342 RHLYPFFDMAYLGLTS-GDFDKDAFSLRYFAKEVGQLCLAQSFS--KNMGLYGERVGTFSVLTPTSDETERIMSQLKILI 418 (583)
Q Consensus 342 ~~i~iI~De~Y~~l~~-~~~~~~~~~~~~~~~~~~~vi~i~S~S--K~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~ 418 (583)
+|++||+|++|..... ++ .. . ... .-+++.||| |.++.+| +.|++++ ++ +++++++....
T Consensus 150 ~~~~li~D~a~~~g~~~~~---~~--~----~~~-~d~~~~S~~~~K~l~~~g-~gg~~~~--~~----~~~~~~~~~~~ 212 (373)
T 3frk_A 150 YNLKLIEDAAQAHGSLYKG---MK--V----GSL-GDAAGFSFYPAKNLGSLG-DGGAVVT--ND----KDLAEKIKALS 212 (373)
T ss_dssp HTCEEEEECTTCTTCEETT---EE--T----TSS-SSEEEEECCTTSSSCCSS-SCEEEEE--SC----HHHHHHHHHHH
T ss_pred cCCEEEEECCcccCCEECC---Ee--c----ccc-ccEEEEeCcCCCccCccc-eeEEEEe--CC----HHHHHHHHHHH
Confidence 9999999999986432 22 10 1 101 127788887 8876325 4889888 65 46777777654
|
| >3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1e-17 Score=177.82 Aligned_cols=182 Identities=14% Similarity=0.092 Sum_probs=139.4
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcC-CCChhhHHH---------
Q psy14428 205 IGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPT-PTWNGHVRF--------- 274 (583)
Q Consensus 205 ~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~-P~y~~~~~~--------- 274 (583)
..|...|++.+|++++.. ..++..|+++|++|+.++ +..++.+||+|++++ |.|..+...
T Consensus 72 ~~~~~~Le~~lA~l~g~e-------~alv~p~~~sGt~Ai~~a---l~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~ 141 (427)
T 3i16_A 72 DIGRDSLDAVYARVFNTE-------SALVRPHFVNGTHALGAA---LFGNLRPGNTMLSVCGEPYDTLHDVIGITENSNM 141 (427)
T ss_dssp CHHHHHHHHHHHHHHTCS-------EEEEETTCCSHHHHHHHH---HHHHCCTTCEEEESSSSCCGGGHHHHTCSCCCSS
T ss_pred HHHHHHHHHHHHHHhCCc-------ceEEeCCCccHHHHHHHH---HHHHhCCCCEEEEeCCCccHHHHHHHhccccchH
Confidence 346789999999998642 123311156778888774 455677799999999 999988744
Q ss_pred --HhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCC----CCCCCCCCCCHHHHHHHHHHHHh--cCeEE
Q psy14428 275 --CTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTS----SHNPTGVDLSEDQWRQLAVVVKQ--RHLYP 346 (583)
Q Consensus 275 --~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~----p~NPTG~~~s~~~~~~l~~~a~~--~~i~i 346 (583)
++..|++++.+++ ++ ++.+|++.+++.+.+ .++++++++++ |+|||| +..++++|+++|++ +++++
T Consensus 142 ~~l~~~G~~~~~v~~-~~-~g~~D~e~l~~~l~~-~~~tklV~i~~s~~~p~nptg---~i~dl~~i~~la~~~~~g~~l 215 (427)
T 3i16_A 142 GSLKEFGINYKQVDL-KE-DGKPNLEEIEKVLKE-DESITLVHIQRSTGYGWRRAL---LIEDIKSIVDCVKNIRKDIIC 215 (427)
T ss_dssp CCTGGGTCEEEECCC-CT-TSSCCHHHHHHHHHT-CTTEEEEEEECSCCSSSSCCC---CHHHHHHHHHHHHHHCTTSEE
T ss_pred HHHHHcCCEEEEecC-cc-CCCcCHHHHHHHhhC-CCCCEEEEEEcCCCCCCCCcc---cHHHHHHHHHHHHHhCCCCEE
Confidence 4567999999998 44 356899999999853 15788999988 889987 45789999999999 99999
Q ss_pred EEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccC-ccceEEEEEcCCchhHHHHHHHHHHHHh
Q psy14428 347 FFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYG-ERVGTFSVLTPTSDETERIMSQLKILIR 419 (583)
Q Consensus 347 I~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~G-lRiG~lv~~~p~~~~~~~li~~l~~~~~ 419 (583)
|+|++|..+.+.. .+. ..+..|+++|+||++|.+| .+.||+++ + ++++++++....
T Consensus 216 ivD~a~~~~~~~~---~p~-------~~gaDiv~~S~sK~lgg~g~~~gG~i~~--~-----~~li~~l~~~~~ 272 (427)
T 3i16_A 216 FVDNCYGEFMDTK---EPT-------DVGADLIAGSLIKNIGGGIAPTGGYLAG--T-----KDCIEKTSYRLT 272 (427)
T ss_dssp EEECTTTTTSSSS---CGG-------GGTCSEEEEETTSGGGTTTCCSCEEEEE--C-----HHHHHHHHHHHS
T ss_pred EEECCCccccccC---Ccc-------ccCCeEEEecCcccCCCCCCceEEEEEE--C-----HHHHHHHHHhcc
Confidence 9999999887543 111 1234689999999998666 67899999 6 689999987543
|
| >3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.5e-17 Score=174.76 Aligned_cols=183 Identities=14% Similarity=0.134 Sum_probs=138.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEe-cCCchhHHHHHHHHHHHhCCCCCEEEEcC-CCChhhHH----
Q psy14428 200 HEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQ-GISGSGSLRVGTAFLERFYPGVKTVYFPT-PTWNGHVR---- 273 (583)
Q Consensus 200 ~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~-t~G~~~al~l~~~~l~~~~~~gd~Vlv~~-P~y~~~~~---- 273 (583)
+.|+.. |...|++.+|++++.. ..++.+ +++|++|+.++ +..++.|||+|++++ |.|..+..
T Consensus 69 y~Y~~~-g~~~Le~~lA~l~g~e--------~alv~p~~~sGt~A~~~a---l~all~pGD~Vl~~~~~~y~~~~~~~g~ 136 (427)
T 3hvy_A 69 YGYNDI-GRDSLDRVYANIFNTE--------SAFVRPHFVNGTHAIGAA---LFGNLRPNDTMMSICGMPYDTLHDIIGM 136 (427)
T ss_dssp TCTTCH-HHHHHHHHHHHHHTCS--------EEEEETTCCSHHHHHHHH---HHHTCCTTCEEEECSSSCCGGGHHHHTC
T ss_pred CCCCch-hHHHHHHHHHHHhCCC--------ceEEeCCCCcHHHHHHHH---HHHhcCCCCEEEEeCCCCchhHHHHhcc
Confidence 345444 7889999999998642 222211 56778898874 555677899999999 99998874
Q ss_pred -------HHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCC----CCCCCCCCCCHHHHHHHHHHHHh-
Q psy14428 274 -------FCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTS----SHNPTGVDLSEDQWRQLAVVVKQ- 341 (583)
Q Consensus 274 -------~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~----p~NPTG~~~s~~~~~~l~~~a~~- 341 (583)
.++..|++++.++. + ++++|++.+++.+.+ .++++++++++ |+|||| +..++++|+++|++
T Consensus 137 ~~~~~~~~l~~~G~~~~~v~~-~--~~~~d~e~l~~~i~~-~~~tklV~i~~s~gyp~nptg---~v~dl~~i~~ia~~~ 209 (427)
T 3hvy_A 137 DDSKKVGSLREYGVKYKMVDL-K--DGKVDINTVKEELKK-DDSIKLIHIQRSTGYGWRKSL---RIAEIAEIIKSIREV 209 (427)
T ss_dssp CTTCCSCCTGGGTCEEEECCC-B--TTBCCHHHHHHHHHH-CTTEEEEEEESSCCSSSSCCC---CHHHHHHHHHHHHHH
T ss_pred ccchhhhHHHHcCCEEEEecC-C--CCCcCHHHHHHHhhC-CCCCEEEEEECCCCCCCCccc---cHHHHHHHHHHHHHh
Confidence 34667999999987 3 368899999999853 15788999988 899987 45789999999999
Q ss_pred -cCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccC-ccceEEEEEcCCchhHHHHHHHHHHHH
Q psy14428 342 -RHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYG-ERVGTFSVLTPTSDETERIMSQLKILI 418 (583)
Q Consensus 342 -~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~G-lRiG~lv~~~p~~~~~~~li~~l~~~~ 418 (583)
+|+++|+|++|..+.+.. .+ + ..+..|+++|+||+++.+| .+.||+++ + ++++++++...
T Consensus 210 ~~g~~livD~a~~~~~~~~---~p--~-----~~gaDiv~~S~sK~lgg~g~~~GG~i~~--~-----~~li~~l~~~~ 271 (427)
T 3hvy_A 210 NENVIVFVDNCYGEFVEEK---EP--T-----DVGADIIAGSLIKNIGGGIATTGGYIAG--K-----EEYVTQATFRV 271 (427)
T ss_dssp CSSSEEEEECTTCTTTSSS---CG--G-----GGTCSEEEEETTSGGGTTTCCSCEEEEE--C-----HHHHHHHHHHH
T ss_pred CCCCEEEEECCccccccCC---CC--c-----ccCCeEEEECCcccccccccceEEEEEE--C-----HHHHHHHHHHh
Confidence 899999999999887542 11 1 1234689999999998555 56689888 6 57888887654
|
| >3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=99.76 E-value=6.3e-17 Score=172.36 Aligned_cols=159 Identities=14% Similarity=0.022 Sum_probs=125.3
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHH----HHhhcC
Q psy14428 204 NIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVR----FCTDSR 279 (583)
Q Consensus 204 ~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~----~~~~~G 279 (583)
+.....+|++.+|++++. +..++ +++|++|+.++ +..++.+||+|++++|+|..+.. .++..|
T Consensus 80 ~~p~~~~le~~lA~l~g~--------~~~v~--~~sG~~Ai~~a---l~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G 146 (430)
T 3ri6_A 80 SNPTVEDLEQRLKNLTGA--------LGVLA--LGSGMAAISTA---ILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFG 146 (430)
T ss_dssp CCHHHHHHHHHHHHHHTC--------SEEEE--ESCHHHHHHHH---HHHHCCTTCEEEEETTCCHHHHHHHHTHHHHTT
T ss_pred CCHHHHHHHHHHHHHHCC--------CcEEE--ECCHHHHHHHH---HHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcC
Confidence 455678899999998863 22344 44557888874 44557779999999999998887 667889
Q ss_pred CeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCC
Q psy14428 280 LNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGD 359 (583)
Q Consensus 280 ~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~ 359 (583)
++++.++. + |++.+++++ .++++++++++|+||||.+++ +++|+++|+++|+++|+|++|....+..
T Consensus 147 ~~~~~v~~-~------d~~~l~~ai---~~~t~~v~~e~p~NptG~~~d---l~~i~~la~~~g~~livD~a~~~~~~~~ 213 (430)
T 3ri6_A 147 IEVRFVDV-M------DSLAVEHAC---DETTKLLFLETISNPQLQVAD---LEALSKVVHAKGIPLVVDTTMTPPYLLE 213 (430)
T ss_dssp CEEEEECT-T------CHHHHHHHC---CTTEEEEEEESSCTTTCCCCC---HHHHHHHHHTTTCCEEEECTTSCTTTCC
T ss_pred CEEEEeCC-C------CHHHHHHhh---CCCCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCcccccCC
Confidence 99999877 2 788888877 568999999999999999997 5577888999999999999998655432
Q ss_pred CCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEE
Q psy14428 360 FDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSV 399 (583)
Q Consensus 360 ~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~ 399 (583)
+ ...+..+++.|+||.++.+|..+|.+++
T Consensus 214 ----~-------~~~g~div~~S~sK~l~g~g~~~gG~vv 242 (430)
T 3ri6_A 214 ----A-------KRLGVDIEVLSSTKFISGGGTSVGGVLI 242 (430)
T ss_dssp ----G-------GGGTCSEEEEECCCEEETTEEECCEEEE
T ss_pred ----h-------HHcCCEEEEECCcccccCCCCceEEEEE
Confidence 1 1234568999999999878877777766
|
| >3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.75 E-value=9.3e-18 Score=178.01 Aligned_cols=155 Identities=16% Similarity=0.110 Sum_probs=101.8
Q ss_pred cCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChh---hHHHHhhcCC--eEEEEecccCCCCCCChhhHHHHHHcCCCCc
Q psy14428 237 GISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNG---HVRFCTDSRL--NVGAYRYFDNKTNGLDFAGMMEDIKAMPERS 311 (583)
Q Consensus 237 t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~---~~~~~~~~G~--~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~ 311 (583)
++||++|+..+ +..+..+||+|++++|+|.. +.......|. +++.++. +++++++|++.+++.+.+ .++
T Consensus 100 ~~~Gs~a~~~a---l~~~~~~gd~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~d~~~l~~~i~~--~~~ 173 (425)
T 3ecd_A 100 PHSGAQANGAV---MLALAKPGDTVLGMSLDAGGHLTHGAKPALSGKWFNALQYGV-SRDTMLIDYDQVEALAQQ--HKP 173 (425)
T ss_dssp CSSHHHHHHHH---HHHHCCTTCEEEEECC------------------CEEEEECC-CTTTSSCCHHHHHHHHHH--HCC
T ss_pred cCchHHHHHHH---HHHccCCCCEEEEcccccccceecchhhhhcccceeeeecCC-CcccCccCHHHHHHHHhh--cCC
Confidence 67778898875 44457779999999999987 3333234444 5566666 445578999999998852 356
Q ss_pred EEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccC-CCCCCCCCCCchHHHHHHHHhcCcEEEEecCccccccc
Q psy14428 312 ILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAY-LGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLY 390 (583)
Q Consensus 312 ~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y-~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~ 390 (583)
+++++++|+||+- ..+++|.++|+++|++||+||+| .++.+.+. ....+ +. ..+++.||||.+ +
T Consensus 174 ~~v~~~~~~~~~~-----~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~--~~~~~----~~--~di~~~s~sK~l--~ 238 (425)
T 3ecd_A 174 SLIIAGFSAYPRK-----LDFARFRAIADSVGAKLMVDMAHIAGVIAAGR--HANPV----EH--AHVVTSTTHKTL--R 238 (425)
T ss_dssp SEEEEECSCCCSC-----CCHHHHHHHHHHHTCEEEEECGGGHHHHHTTS--SCCGG----GT--CSEEEEESSGGG--C
T ss_pred cEEEEccccCCCc-----CCHHHHHHHHHHcCCEEEEECcChHhhhhccc--ccCch----hc--CcEEEecCCccc--C
Confidence 7888889999853 34578899999999999999994 33333321 11111 11 128899999987 7
Q ss_pred CccceEEEEEcCCchhHHHHHHHHHHHH
Q psy14428 391 GERVGTFSVLTPTSDETERIMSQLKILI 418 (583)
Q Consensus 391 GlRiG~lv~~~p~~~~~~~li~~l~~~~ 418 (583)
|.|+||+++ ++ +.+.+.+....
T Consensus 239 g~~~g~~~~--~~----~~~~~~~~~~~ 260 (425)
T 3ecd_A 239 GPRGGFVLT--ND----EEIAKKINSAV 260 (425)
T ss_dssp CCSCEEEEE--SC----HHHHHHHHHHH
T ss_pred CCCcEEEEe--CC----HHHHHHHHhhh
Confidence 889999999 64 35666666543
|
| >2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.6e-18 Score=180.35 Aligned_cols=180 Identities=12% Similarity=0.026 Sum_probs=123.4
Q ss_pred CChHHHHHHHHHhccCC--------CCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCC-C-eEEEecCCchhHHHHHHHHH
Q psy14428 182 VLPSVKEAERRIYEKNL--------DHEYANIGGDAKFCKLAAQLAYGEDFPAFKDN-R-LAIVQGISGSGSLRVGTAFL 251 (583)
Q Consensus 182 ~~~~v~~a~~~~~~~~~--------~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~-~-I~i~~t~G~~~al~l~~~~l 251 (583)
+++.+.+++.+.+.+.. ..+| ..+..++++++.+.+.+..|. +++ + |++ |+|+++++.++ +
T Consensus 15 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~la~~~g~--~~~~~~i~~--t~g~t~a~~~~---~ 85 (362)
T 2c0r_A 15 LPLEVLERAQAEFVDYQHTGMSIMEMSHR--GAVYEAVHNEAQARLLALLGN--PTGYKVLFI--QGGASTQFAMI---P 85 (362)
T ss_dssp CCHHHHHHHHHTSSSSTTSSSCGGGSCTT--SHHHHHHHHHHHHHHHHHTTC--CSSEEEEEE--SSHHHHHHHHH---H
T ss_pred CCHHHHHHHHHHHhhhhhcCccccccCCC--cHHHHHHHHHHHHHHHHHhCC--CCCcEEEEE--CCCchHHHHHH---H
Confidence 56788888877664310 1112 123455666777776665554 343 5 467 89999999985 4
Q ss_pred HHhCCCCCEEEEcCCC-Chhh-HHHHhhcCCeEEEEecccC-CCCCC--ChhhHHHHHHcCCCCcEEEEeCCCCCCCCCC
Q psy14428 252 ERFYPGVKTVYFPTPT-WNGH-VRFCTDSRLNVGAYRYFDN-KTNGL--DFAGMMEDIKAMPERSILFLQTSSHNPTGVD 326 (583)
Q Consensus 252 ~~~~~~gd~Vlv~~P~-y~~~-~~~~~~~G~~~~~v~~~d~-~~~g~--d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~ 326 (583)
..++.+||+|++++|. |..+ ...++..| +++.+++ +. ++++. |.+.++ + .++++++++++|+||||.+
T Consensus 86 ~~l~~~gd~vl~~~~~~~~~~~~~~~~~~g-~~~~v~~-~~~~~~~~~~~~~~~~--i---~~~t~~v~~~~~~n~tG~~ 158 (362)
T 2c0r_A 86 MNFLKEGQTANYVMTGSWASKALKEAKLIG-DTHVAAS-SEASNYMTLPKLQEIQ--L---QDNAAYLHLTSNETIEGAQ 158 (362)
T ss_dssp HHHCCTTCEEEEEECSHHHHHHHHHHHHHS-CEEEEEE-CGGGTTCSCCCGGGCC--C---CTTEEEEEEESEETTTTEE
T ss_pred HhcCCCCCeEEEEecCcHhHHHHHHHHHhC-CeEEEec-ccccccccCCCHHHcc--c---CCCcCEEEEeCCcCcccee
Confidence 4556779999988776 5443 46677789 9999988 42 22343 544432 3 5689999999999999997
Q ss_pred CCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEE
Q psy14428 327 LSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSV 399 (583)
Q Consensus 327 ~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~ 399 (583)
++ ++++| +++++|+|++|..+... . .+ ... .+++.|+||.+|++| +||+++
T Consensus 159 ~~--~l~~i------~~~~vivD~a~~~~~~~-----~-~~----~~~--d~~~~s~~K~~g~~G--~G~l~~ 209 (362)
T 2c0r_A 159 FK--AFPDT------GSVPLIGDMSSDILSRP-----F-DL----NQF--GLVYAGAQKNLGPSG--VTVVIV 209 (362)
T ss_dssp CS--SCCCC------TTSCEEEECTTTTTSSC-----C-CG----GGC--SEEEEETTTTTCCSS--CEEEEE
T ss_pred cc--ccccc------CCCEEEEEChhhccCCc-----c-ch----hHC--cEEEEeccccccCcC--cEEEEE
Confidence 65 34444 89999999999876432 1 11 222 377789999999889 999999
|
| >3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=3.6e-17 Score=172.80 Aligned_cols=192 Identities=15% Similarity=0.106 Sum_probs=146.6
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHH-----hhcC
Q psy14428 205 IGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFC-----TDSR 279 (583)
Q Consensus 205 ~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~-----~~~G 279 (583)
.....+|++.++++... ++.++ +++|++|+..+ + .+..+||+|++++|+|......+ +..|
T Consensus 66 ~p~~~~l~~~la~l~g~--------~~~~~--~~sG~~Ai~~~---~-~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g 131 (400)
T 3nmy_A 66 NPTRFAYERCVAALEGG--------TRAFA--FASGMAATSTV---M-ELLDAGSHVVAMDDLYGGTFRLFERVRRRTAG 131 (400)
T ss_dssp CHHHHHHHHHHHHHHTC--------SEEEE--ESSHHHHHHHH---H-TTSCTTCEEEEESSCCHHHHHHHHHTHHHHHC
T ss_pred CHHHHHHHHHHHHHhCC--------CCEEE--ecCHHHHHHHH---H-HHcCCCCEEEEeCCCchHHHHHHHHhhHhhcC
Confidence 33457888899988753 24555 56668898863 3 35667999999999999665554 3459
Q ss_pred CeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCC
Q psy14428 280 LNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGD 359 (583)
Q Consensus 280 ~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~ 359 (583)
++++.++. + |++.+++.+ .++++++++++|+||||.+++ +++|+++|+++|+++|+||+|....+..
T Consensus 132 ~~~~~v~~-~------d~~~l~~~i---~~~~~~v~~e~~~np~G~~~~---l~~i~~la~~~g~~livDe~~~~~~~~~ 198 (400)
T 3nmy_A 132 LDFSFVDL-T------DPAAFKAAI---RADTKMVWIETPTNPMLKLVD---IAAIAVIARKHGLLTVVDNTFASPMLQR 198 (400)
T ss_dssp CEEEEECT-T------SHHHHHHHC---CTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTHHHHCC
T ss_pred eEEEEECC-C------CHHHHHHHh---ccCCCEEEEECCCCCCCeeec---HHHHHHHHHHcCCEEEEECCCcccccCC
Confidence 99998876 2 788888877 568899999999999999997 7788899999999999999996432221
Q ss_pred CCCchHHHHHHHHhcCcEEEEecCcccccccCccceE-EEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhC
Q psy14428 360 FDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGT-FSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILS 438 (583)
Q Consensus 360 ~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~-lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~ 438 (583)
+ ...+..+++.|+||.++.+|.++|. +++. .+ +++++++.........+.+++.++++...++
T Consensus 199 ------~-----~~~g~div~~S~sK~l~g~g~~~gG~~vv~-~~----~~~~~~l~~~~~~~g~~~~~~~a~~~l~~l~ 262 (400)
T 3nmy_A 199 ------P-----LSLGADLVVHSATKYLNGHSDMVGGIAVVG-DN----AELAEQMAFLQNSIGGVQGPFDSFLALRGLK 262 (400)
T ss_dssp ------G-----GGGTCSEEEEETTTTTTCSSSCCCEEEEEC-SC----HHHHHHHHHHHHHHCCBCCHHHHHHHHHHHT
T ss_pred ------h-----hhcCCcEEEecCccccCCCCCcceeEEEEe-CC----HHHHHHHHHHHHhcCCCCCHHHHHHHHHhHh
Confidence 1 1124679999999999989999988 4442 33 5788888887777777888888888877776
Q ss_pred C
Q psy14428 439 D 439 (583)
Q Consensus 439 ~ 439 (583)
.
T Consensus 263 ~ 263 (400)
T 3nmy_A 263 T 263 (400)
T ss_dssp T
T ss_pred H
Confidence 5
|
| >2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2e-17 Score=178.16 Aligned_cols=214 Identities=14% Similarity=0.088 Sum_probs=142.2
Q ss_pred CCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCch
Q psy14428 162 HPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGS 241 (583)
Q Consensus 162 ~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~ 241 (583)
....++++.|...-++....+.+.+.+++.+.+..+ ...|.+..|..+||++++++++. +++++ |+|++
T Consensus 31 g~~~~~~~~~~~ylD~~~~~~~~~v~~a~~~~l~~~-~~~y~~~~~~~~l~~~la~~~~~--------~~v~~--t~~gt 99 (467)
T 2oqx_A 31 GMNPFLLDSEDVFIDLLTDSGTGAVTQSMQAAMMRG-DEAYSGSRSYYALAESVKNIFGY--------QYTIP--THQGR 99 (467)
T ss_dssp TSCGGGSCGGGCSEECSCCSSCSCCCHHHHHHTTSC-CCCSSSCHHHHHHHHHHHHHHCC--------SEEEE--EC--C
T ss_pred CCCceeccCCCeeEecccCCCcHHHHHHHHHHhccC-cceeccCchhHHHHHHHHHHhCc--------CcEEE--cCCcH
Confidence 344566666543111111111155666666655433 34688888999999999999953 58999 99999
Q ss_pred hHHHHHHHHHHHhCCC-----C----CEEEEcCCCChhhHHHHhhcCCeEEEEecc---cC-----CCCCCChhhHHHHH
Q psy14428 242 GSLRVGTAFLERFYPG-----V----KTVYFPTPTWNGHVRFCTDSRLNVGAYRYF---DN-----KTNGLDFAGMMEDI 304 (583)
Q Consensus 242 ~al~l~~~~l~~~~~~-----g----d~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~---d~-----~~~g~d~~~l~~~l 304 (583)
+|+.++..+ +..+ | |.|++..+.|..+.......|+.++..... +. .++.+|++.+++.+
T Consensus 100 ~A~~~al~~---~~~~~~~~~G~~~~d~Ii~~~~h~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~i 176 (467)
T 2oqx_A 100 GAEQIYIPV---LIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGI 176 (467)
T ss_dssp CSHHHHHHH---HHHHHHHHHCCCTTTCEEEESSCCHHHHHHHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHH
T ss_pred HHHHHHHHH---HhccccccCCCCccceEEecccccccchhhhhccCcceeeccccccccCCCCCCccCCcCHHHHHHHH
Confidence 999986433 3345 6 888887656666666677777776654210 11 23457999999998
Q ss_pred HcCC-CCcEEEEeCCCCCCC-CCCCCHHHHHHHHHHHHhcCeEEEEeccCCC----------CCCCCCCCchHHHHHHH-
Q psy14428 305 KAMP-ERSILFLQTSSHNPT-GVDLSEDQWRQLAVVVKQRHLYPFFDMAYLG----------LTSGDFDKDAFSLRYFA- 371 (583)
Q Consensus 305 ~~~~-~~~~~i~i~~p~NPT-G~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~----------l~~~~~~~~~~~~~~~~- 371 (583)
.... ++++++++++||||| |.+++.+++++|+++|++||++||+|++... ..+.+ .+ ...+.
T Consensus 177 ~~~~~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g--~~---~~~~~~ 251 (467)
T 2oqx_A 177 EEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKD--WT---IEQITR 251 (467)
T ss_dssp HHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTT--SC---HHHHHH
T ss_pred HhcCCCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccC--cc---HHHHhh
Confidence 5321 367889999999998 8999999999999999999999999944321 23333 12 22222
Q ss_pred ---HhcCcEEEEecCccccccc-CccceEEEE
Q psy14428 372 ---KEVGQLCLAQSFSKNMGLY-GERVGTFSV 399 (583)
Q Consensus 372 ---~~~~~vi~i~S~SK~~~l~-GlRiG~lv~ 399 (583)
...+ + ++.|+||.+++| | ||+++
T Consensus 252 ~~~~~~d-~-~~~s~sK~~g~~~G---g~~~~ 278 (467)
T 2oqx_A 252 ETYKYAD-M-LAMSAKKDAMVPMG---GLLCM 278 (467)
T ss_dssp HHGGGCS-E-EEEESSSTTCCSSC---EEEEE
T ss_pred hhhccCC-e-EEEecccccCCCCc---eEEEe
Confidence 2223 3 478999999877 4 77777
|
| >3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.73 E-value=8.6e-18 Score=180.36 Aligned_cols=264 Identities=13% Similarity=0.069 Sum_probs=157.7
Q ss_pred CChHHHHHHHHHhccCCCCCCCCC---CCCHHHH--HHHH-HHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhC
Q psy14428 182 VLPSVKEAERRIYEKNLDHEYANI---GGDAKFC--KLAA-QLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFY 255 (583)
Q Consensus 182 ~~~~v~~a~~~~~~~~~~~~Y~~~---~G~~~Lr--~aia-~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~ 255 (583)
+++.+.+++.+.+.+....+|+.. .|.+.++ ++++ +++.+..|.+ .. .++ +++|++|+..+ +..+.
T Consensus 57 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g~~--~~-~v~--~~sGs~a~~~a---~~~~~ 128 (447)
T 3h7f_A 57 VPRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKALFGAE--FA-NVQ--PHSGAQANAAV---LHALM 128 (447)
T ss_dssp CCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCS--EE-ECC--CSSHHHHHHHH---HHHHC
T ss_pred CCHHHHHHHHHHhcCCccccCCcccccCccHHHHHHHHHHHHHHHHHcCCC--ce-EEE--eCCHHHHHHHH---HHHhc
Confidence 367888887766643222334332 3554444 4444 4444333332 22 332 45567788774 45567
Q ss_pred CCCCEEEEcCCCChhhH-H--H--HhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHH
Q psy14428 256 PGVKTVYFPTPTWNGHV-R--F--CTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSED 330 (583)
Q Consensus 256 ~~gd~Vlv~~P~y~~~~-~--~--~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~ 330 (583)
.+||+|++++|+|..+. . . +...+.+++++++ +++++.+|++.+++.+.. .+++++++++|+||++.
T Consensus 129 ~~Gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~d~~~l~~~i~~--~~~~~i~~~~~~~~~~~----- 200 (447)
T 3h7f_A 129 SPGERLLGLDLANGGHLTHGMRLNFSGKLYENGFYGV-DPATHLIDMDAVRATALE--FRPKVIIAGWSAYPRVL----- 200 (447)
T ss_dssp CTTCEEEEECGGGTCCGGGTCTTSHHHHSSEEEEECC-CTTTCSCCHHHHHHHHHH--HCCSEEEEECSSCCSCC-----
T ss_pred CCCCEEEecCcccccccchhhhhhhcCCeeEEEEcCc-CcccCCcCHHHHHHHHHh--cCCeEEEEcCCCCCCcc-----
Confidence 78999999999987621 1 1 2223556777777 555567999999998853 24568888899999986
Q ss_pred HHHHHHHHHHhcCeEEEEeccCC-CCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHH
Q psy14428 331 QWRQLAVVVKQRHLYPFFDMAYL-GLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETER 409 (583)
Q Consensus 331 ~~~~l~~~a~~~~i~iI~De~Y~-~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~ 409 (583)
++++|.++|+++|++||+||+|. ++.+.+. ...++ + ..-+++.|+||++ +|+|.||+++ + ++
T Consensus 201 ~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~--~~~~~----~--~~di~~~s~sK~l--~G~~gG~i~~--~-----~~ 263 (447)
T 3h7f_A 201 DFAAFRSIADEVGAKLLVDMAHFAGLVAAGL--HPSPV----P--HADVVSTTVHKTL--GGGRSGLIVG--K-----QQ 263 (447)
T ss_dssp CHHHHHHHHHHHTCEEEEECTTTHHHHHTTS--SCCST----T--TCSEEEEESSGGG--CCCSCEEEEE--C-----GG
T ss_pred CHHHHHHHHHHcCCEEEEECCchhhhhcCCC--CCCCC----C--CCcEEEecCCcCC--CCCCeEEEEE--C-----HH
Confidence 67889999999999999999963 3333321 01011 1 1237799999987 5899999999 6 36
Q ss_pred HHHHHHHHHhccccC-CChHHHHHHHHHh---CChhhhhhhhhHHHHHHHHHHHHhh------ccCCC--ccchhhHHHH
Q psy14428 410 IMSQLKILIRGFYSN-PPIHGARIVTEIL---SDPKLKAQCDETERIMSQLKILIRG------FYSNP--PIHGARIVTE 477 (583)
Q Consensus 410 li~~l~~~~~~~~~~-~s~~~q~~~~~~l---~~~~~~~~~~~~~~~~~~l~~~~r~------~~~~~--p~~g~~i~~~ 477 (583)
+++.+.........+ ++...+.+++..+ .+.+++...++..+..+.+.+.++. .+... +..+.++|+.
T Consensus 264 ~~~~l~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~~~~~~~~~ 343 (447)
T 3h7f_A 264 YAKAINSAVFPGQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMAPDVAKAGVSVVSGGTDVHLVLVD 343 (447)
T ss_dssp GHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSHHHHHTTCEEGGGSCSSSEEEEE
T ss_pred HHHHHhhhcCCcccCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEecCCCCCCEEEEE
Confidence 777777664443333 3333233333322 3334444444444444444443332 23332 2455566654
Q ss_pred h
Q psy14428 478 I 478 (583)
Q Consensus 478 ~ 478 (583)
+
T Consensus 344 ~ 344 (447)
T 3h7f_A 344 L 344 (447)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.8e-17 Score=178.14 Aligned_cols=206 Identities=13% Similarity=0.096 Sum_probs=142.6
Q ss_pred CCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCC------CCCCCCCHHHHHHHHHHHhCCCCCCCCC--CCeEE
Q psy14428 163 PKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHE------YANIGGDAKFCKLAAQLAYGEDFPAFKD--NRLAI 234 (583)
Q Consensus 163 ~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~------Y~~~~G~~~Lr~aia~~~~~~~g~~~~~--~~I~i 234 (583)
.+.|+|..++. ++++.+.+++.+.+.+....+ |....+..++++++.+++.+.+|.+.+. .+|++
T Consensus 44 ~~~i~L~a~e~-------~~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~ 116 (483)
T 1rv3_A 44 RVGLELIASEN-------FASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQP 116 (483)
T ss_dssp HSSEECCTTCC-------CCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCC
T ss_pred hcCeEEEcCCC-------CCCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCcccCceEEEE
Confidence 35688876653 156888888877765421112 3334456788888878887777765322 34888
Q ss_pred EecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHH--------HhhcC--CeEEEEecccCCCCCCChhhHHHHH
Q psy14428 235 VQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRF--------CTDSR--LNVGAYRYFDNKTNGLDFAGMMEDI 304 (583)
Q Consensus 235 ~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~--------~~~~G--~~~~~v~~~d~~~~g~d~~~l~~~l 304 (583)
++|+ +++..+ +..++.|||+|++++|+|..+... +...| .+++++++ +++++.+|++.+++.+
T Consensus 117 --~sGs-~an~~~---~~all~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~-~~~~~~iD~d~le~~i 189 (483)
T 1rv3_A 117 --YSGS-PANFAV---YTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKV-NPDTGYIDYDRLEENA 189 (483)
T ss_dssp --SSHH-HHHHHH---HHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECB-CTTTCSBCHHHHHHHH
T ss_pred --CCcH-HHHHHH---HHHhcCCCCEEEEecCccCcCcchhhhhcccCcccccceEEEEECcc-ccCCCcCCHHHHHHHH
Confidence 8888 677663 344567799999999998877532 23334 55666665 5456789999999998
Q ss_pred HcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCC-CCCCCCCCCchHHHHHHHHhcCcEEEEecC
Q psy14428 305 KAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYL-GLTSGDFDKDAFSLRYFAKEVGQLCLAQSF 383 (583)
Q Consensus 305 ~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~-~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~ 383 (583)
.+ .+++++++ +++||+ .+++ +++|.++|+++|++||+|++|. ++.+.+. ...++ . ...+++.|+
T Consensus 190 ~~--~~tklIi~-~~sn~~-~~~d---l~~i~~ia~~~g~~livD~ah~~g~~~~~~--~~~p~----~--~~div~~s~ 254 (483)
T 1rv3_A 190 RL--FHPKLIIA-GTSCYS-RNLD---YGRLRKIADENGAYLMADMAHISGLVVAGV--VPSPF----E--HCHVVTTTT 254 (483)
T ss_dssp HH--HCCSEEEE-CCSSCC-SCCC---HHHHHHHHHHTTCEEEEECTTTHHHHHHTS--SCCGG----G--TCSEEEEES
T ss_pred hh--cCCcEEEE-eCCcCC-CcCC---HHHHHHHHHHcCCEEEEEccchhcccccCC--CCCCC----C--CCcEEEecC
Confidence 52 45678888 899999 7777 6677889999999999999975 3333221 11111 1 234788999
Q ss_pred cccccccCccceEEEE
Q psy14428 384 SKNMGLYGERVGTFSV 399 (583)
Q Consensus 384 SK~~~l~GlRiG~lv~ 399 (583)
||++ +|+|.||+++
T Consensus 255 ~K~l--~GprgG~i~~ 268 (483)
T 1rv3_A 255 HKTL--RGCRAGMIFY 268 (483)
T ss_dssp SGGG--CCCSCEEEEE
T ss_pred cccC--CCCCceEEEE
Confidence 9987 6999999999
|
| >3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=5.3e-17 Score=174.95 Aligned_cols=164 Identities=13% Similarity=0.081 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCC---CEEEEcCCCChhhHH----HHhhcCCe
Q psy14428 209 AKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGV---KTVYFPTPTWNGHVR----FCTDSRLN 281 (583)
Q Consensus 209 ~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~g---d~Vlv~~P~y~~~~~----~~~~~G~~ 281 (583)
..+|+.++++++ .++++|++ |+|+++++.++ +..+..+| ++|++++|+|+.... .++..|++
T Consensus 114 ~~l~~~la~~~g------~~~~~v~~--t~g~t~al~~~---~~~~~~~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~ 182 (465)
T 3e9k_A 114 ESIVGLMKDIVG------ANEKEIAL--MNALTVNLHLL---MLSFFKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLN 182 (465)
T ss_dssp HHHHGGGHHHHT------CCGGGEEE--CSCHHHHHHHH---HHHHCCCCSSSCEEEEETTCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcC------CCcCCEEE--ECCHHHHHHHH---HHHhccccCCCCEEEEcCCcCCchHHHHHHHHHHcCCc
Confidence 668889998875 34789999 99999999985 44454444 459999999988444 56668987
Q ss_pred EE----E-EecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCC
Q psy14428 282 VG----A-YRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLT 356 (583)
Q Consensus 282 ~~----~-v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~ 356 (583)
++ . +|. + +++.+|++.+++.+++..++++++++++||||||.+++. ++|.++|+++|++||+|+++..-.
T Consensus 183 ~~~~~v~~~~~-~-~~~~~d~~~l~~~i~~~~~~~~lv~~~~~~n~tG~~~~l---~~i~~la~~~g~~vi~D~a~~~g~ 257 (465)
T 3e9k_A 183 IEESMRMIKPR-E-GEETLRIEDILEVIEKEGDSIAVILFSGVHFYTGQHFNI---PAITKAGQAKGCYVGFDLAHAVGN 257 (465)
T ss_dssp HHHHEEEECCC-T-TCSSCCHHHHHHHHHHHGGGEEEEEEESBCTTTCBBCCH---HHHHHHHHHTTCEEEEECTTTTTT
T ss_pred ceeeeEEEecC-C-CCCccCHHHHHHHHHhcCCCeEEEEEeCcccCcceeecH---HHHHHHHHHcCCEEEEEhhhhcCC
Confidence 52 2 233 2 346789999999996433578999999999999999984 667888999999999999987433
Q ss_pred CCCCCCchHHHHHHHHhcCcEEEEecCccccc-ccCccceEEEE
Q psy14428 357 SGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMG-LYGERVGTFSV 399 (583)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~-l~GlRiG~lv~ 399 (583)
.. ..+.. .+..+++.|++|.++ .|| ++|++++
T Consensus 258 ~~------~~~~~----~~~D~~~~s~~K~l~~gp~-~~g~l~~ 290 (465)
T 3e9k_A 258 VE------LYLHD----WGVDFACWCSYKYLNAGAG-GIAGAFI 290 (465)
T ss_dssp SC------CCHHH----HTCCEEEECSSSTTCCCTT-CCCEEEE
T ss_pred cC------Cchhh----cCCCEEEECcccccccCCC-ceEEEEE
Confidence 21 12222 245588999999994 244 8999999
|
| >3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=8.6e-17 Score=170.29 Aligned_cols=205 Identities=16% Similarity=0.133 Sum_probs=123.7
Q ss_pred CChHHHHHHHHHhccCCCCC------CCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhC
Q psy14428 182 VLPSVKEAERRIYEKNLDHE------YANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFY 255 (583)
Q Consensus 182 ~~~~v~~a~~~~~~~~~~~~------Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~ 255 (583)
+++.+.+++.+.+.+....+ |........+++...+++.+..+ +++++|++ ++| ++++.++ +..+.
T Consensus 42 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~~v~~--~sG-s~a~~~a---~~~~~ 113 (420)
T 3gbx_A 42 TSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFG--ADYANVQP--HSG-SQANFAV---YTALL 113 (420)
T ss_dssp CCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHT--CSEEECCC--SSH-HHHHHHH---HHHHC
T ss_pred CCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhC--CCCceeEe--cCc-HHHHHHH---HHHhc
Confidence 45788888877663321112 22233334444433333333223 35677877 777 6788874 45567
Q ss_pred CCCCEEEEcCCCChhhH---HHHhh--cCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHH
Q psy14428 256 PGVKTVYFPTPTWNGHV---RFCTD--SRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSED 330 (583)
Q Consensus 256 ~~gd~Vlv~~P~y~~~~---~~~~~--~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~ 330 (583)
.+||+|++++|+|..+. ..... .+...+.++. + +++.+|++.+++.+.. .+++++++++|+||+ ..+
T Consensus 114 ~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~-~~~~~d~~~l~~~i~~--~~~~~v~~~~~~~~~--~~~-- 185 (420)
T 3gbx_A 114 QPGDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGI-D-ESGKIDYDEMAKLAKE--HKPKMIIGGFSAYSG--VVD-- 185 (420)
T ss_dssp CTTCEEEEEEEC------------CHHHHSEEEEEEE-C-TTCSCCHHHHHHHHHH--HCCSEEEECCTTCCS--CCC--
T ss_pred CCCCEEEecchhhcceeccchhhhhcccceeEEeccC-C-ccCCcCHHHHHHHHHh--cCCeEEEEecCccCC--ccC--
Confidence 77999999999998743 22222 3445666676 4 4467899999998853 246788888999985 444
Q ss_pred HHHHHHHHHHhcCeEEEEeccCCC-CCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHH
Q psy14428 331 QWRQLAVVVKQRHLYPFFDMAYLG-LTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETER 409 (583)
Q Consensus 331 ~~~~l~~~a~~~~i~iI~De~Y~~-l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~ 409 (583)
+++|.++|+++|++||+||+|.. +...+. ....+ ....|++.|+||.++ |.|.||+++ ++.. +.
T Consensus 186 -l~~l~~l~~~~~~~li~De~~~~~~~~~~~--~~~~~------~~~di~~~s~sK~~~--g~~gg~~~~--~~~~--~~ 250 (420)
T 3gbx_A 186 -WAKMREIADSIGAYLFVDMAHVAGLIAAGV--YPNPV------PHAHVVTTTTHKTLA--GPRGGLILA--KGGD--EE 250 (420)
T ss_dssp -HHHHHHHHHHTTCEEEEECTTTHHHHHTTS--SCCST------TTSSEEEEESSGGGC--SCSCEEEEE--SSCC--HH
T ss_pred -HHHHHHHHHHcCCEEEEECCcchhceeccc--CCccc------ccCCEEEeecccCCC--CCCceEEEE--cCCc--HH
Confidence 77889999999999999999753 222210 00011 123488999999985 677799999 6310 14
Q ss_pred HHHHHHHH
Q psy14428 410 IMSQLKIL 417 (583)
Q Consensus 410 li~~l~~~ 417 (583)
+++.+...
T Consensus 251 ~~~~~~~~ 258 (420)
T 3gbx_A 251 LYKKLNSA 258 (420)
T ss_dssp HHHHHHHH
T ss_pred HHHHhhhh
Confidence 66665543
|
| >2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... | Back alignment and structure |
|---|
Probab=99.71 E-value=1.2e-16 Score=168.37 Aligned_cols=265 Identities=14% Similarity=0.129 Sum_probs=165.1
Q ss_pred ChHHHHHHHHHhccCCCCCCCC------CCCCHHHH----HHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHH
Q psy14428 183 LPSVKEAERRIYEKNLDHEYAN------IGGDAKFC----KLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLE 252 (583)
Q Consensus 183 ~~~v~~a~~~~~~~~~~~~Y~~------~~G~~~Lr----~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~ 252 (583)
++.+.+++.+.+.+....+|+. .....+|+ ++++++++. ++++|++ ++| ++++.++ +.
T Consensus 36 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~g~------~~~~i~~--~sG-t~a~~~a---~~ 103 (405)
T 2vi8_A 36 SRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGA------EHANVQP--HSG-AQANMAV---YF 103 (405)
T ss_dssp CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTC------SEEECCC--SSH-HHHHHHH---HH
T ss_pred CHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCC------CceEEEe--cCc-HHHHHHH---HH
Confidence 5788888777664211122221 12234454 577777742 2455666 777 9999985 44
Q ss_pred HhCCCCCEEEEcCCCChhhHH-H--HhhcC--CeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCC
Q psy14428 253 RFYPGVKTVYFPTPTWNGHVR-F--CTDSR--LNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDL 327 (583)
Q Consensus 253 ~~~~~gd~Vlv~~P~y~~~~~-~--~~~~G--~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~ 327 (583)
.+..+||+|++++|+|..+.. . +...| .+++.+++ +++++.+|++.+++.+... +++++++ +|+|+ |...
T Consensus 104 ~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~d~~~l~~~i~~~--~~~~v~~-~~~~~-~~~~ 178 (405)
T 2vi8_A 104 TVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGV-DPETHVIDYDDVREKARLH--RPKLIVA-AAAAY-PRII 178 (405)
T ss_dssp HHCCTTCEEEEECGGGTCCTTTTCTTSHHHHHSEEEEECB-CTTTCSBCHHHHHHHHHHH--CCSEEEE-CCSSC-CSCC
T ss_pred HhcCCCCEEEEecccccchhcccchhhhccceeEEEeccc-ccccCCcCHHHHHHHHHhc--CCeEEEE-eCCCC-CccC
Confidence 456679999999999987753 1 12334 47888877 5455789999999988531 4556665 55554 3333
Q ss_pred CHHHHHHHHHHHHhcCeEEEEeccCCCCCC-CCCCCchHHHHHHHHhcCcEEEEecCccccc-ccCccceEEEEEcCCch
Q psy14428 328 SEDQWRQLAVVVKQRHLYPFFDMAYLGLTS-GDFDKDAFSLRYFAKEVGQLCLAQSFSKNMG-LYGERVGTFSVLTPTSD 405 (583)
Q Consensus 328 s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~-~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~-l~GlRiG~lv~~~p~~~ 405 (583)
+ +++|.++|+++|++||+||+|..... .+. .... + +. ..+++.||||.++ ++| ||+++ +
T Consensus 179 ~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~--~~~~---~-~~--~di~~~s~sK~~~g~~g---G~~~~--~--- 239 (405)
T 2vi8_A 179 D---FAKFREIADEVGAYLMVDMAHIAGLVAAGL--HPNP---V-PY--AHFVTTTTHKTLRGPRG---GMILC--Q--- 239 (405)
T ss_dssp C---HHHHHHHHHHHTCEEEEECTTTHHHHHTTS--SCCS---T-TT--CSEEEEESSSTTCCCSC---EEEEE--C---
T ss_pred C---HHHHHHHHHHcCCEEEEEccccccccccCc--CCCc---c-cc--CCEEEEeccccCCCCCC---eEEEE--c---
Confidence 3 68889999999999999999984322 111 1111 1 11 2288999999997 666 99999 6
Q ss_pred hHHHHHHHHHHHHhccccCCChHHHHHH-HHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHhcCChhH
Q psy14428 406 ETERIMSQLKILIRGFYSNPPIHGARIV-TEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKL 484 (583)
Q Consensus 406 ~~~~li~~l~~~~~~~~~~~s~~~q~~~-~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~l~~~~~ 484 (583)
+++++++.........+.+.+.|.++ ...++.-
T Consensus 240 --~~~~~~l~~~~~~~~~~~~~~~~~aa~~~al~~~-------------------------------------------- 273 (405)
T 2vi8_A 240 --EQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEA-------------------------------------------- 273 (405)
T ss_dssp --HHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHH--------------------------------------------
T ss_pred --HHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHH--------------------------------------------
Confidence 47888887654333333333333332 2222110
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccc-cccceeecCCCh
Q psy14428 485 KAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITN-QKGMFCYTGLSA 536 (583)
Q Consensus 485 ~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~-~~g~f~~~~l~~ 536 (583)
....++++++++.++++.+.+.|++.+ +....+ ..+.+.|..++.
T Consensus 274 ---~~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~ 319 (405)
T 2vi8_A 274 ---LQDDFKAYAKRVVDNAKRLASALQNEG----FTLVSGGTDNHLLLVDLRP 319 (405)
T ss_dssp ---HSHHHHHHHHHHHHHHHHHHHHHHHTT----CEEGGGSCSSSEEEEECGG
T ss_pred ---HhhhHHHHHHHHHHHHHHHHHHHHhCC----CeEecCCCCceEEEEEccC
Confidence 001245566777888888888888763 444443 457777877653
|
| >3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.9e-16 Score=163.66 Aligned_cols=217 Identities=12% Similarity=0.023 Sum_probs=151.4
Q ss_pred CChHHHHHHHHHhccCCCCCCCC-CCCCHHHHHHH-HHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHh-CCCC
Q psy14428 182 VLPSVKEAERRIYEKNLDHEYAN-IGGDAKFCKLA-AQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERF-YPGV 258 (583)
Q Consensus 182 ~~~~v~~a~~~~~~~~~~~~Y~~-~~G~~~Lr~ai-a~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~-~~~g 258 (583)
+++.+.+++.+.+..+. |.+ .....+|++++ |++++. .+++++ ++||++|+.++ +..+ ..+|
T Consensus 14 ~~~~i~~a~~~~~~~~~---~~~~~~~~~~l~~~~~a~~~g~-------~~~~v~--~~sgt~al~~a---l~~l~~~~G 78 (377)
T 3ju7_A 14 PVIEYLDELKEIDASHI---YTNYGPINQRFEQTIMSGFFQN-------RGAVTT--VANATLGLMAA---IQLKKRKKG 78 (377)
T ss_dssp CGGGGHHHHHHHHHHTC---CSSSCHHHHHHHHHHHHHTSTT-------CSEEEE--ESCHHHHHHHH---HHHHSCTTC
T ss_pred CcHHHHHHHHHHHHcCC---cccCCHHHHHHHHHHHHHHhCC-------CCeEEE--eCCHHHHHHHH---HHHcCCCCc
Confidence 45677777777776532 332 34578999999 998751 346777 88999999885 3334 6779
Q ss_pred CEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHH
Q psy14428 259 KTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVV 338 (583)
Q Consensus 259 d~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~ 338 (583)
|+|++++|+|..+...++..|++++.+++ +++++.+|++.+++++.....++++++ |+||||...+ +++|.++
T Consensus 79 d~Vi~~~~~~~~~~~~~~~~G~~~~~v~~-~~~~~~~d~~~l~~~i~~~~~~tk~v~---~~~~~G~~~~---~~~i~~l 151 (377)
T 3ju7_A 79 KYALMPSFTFPATPLAAIWCGLEPYFIDI-SIDDWYMDKTVLWDKIEELKEEVAIVV---PYATFGSWMN---LEEYEEL 151 (377)
T ss_dssp CEEEEESSSCTHHHHHHHHTTCEEEEECB-CTTTCSBCHHHHHHHHHHHGGGEEEEC---CBCGGGBCCC---CHHHHHH
T ss_pred CEEEECCCCcHHHHHHHHHcCCEEEEEec-CCccCCcCHHHHHHHHhcCCCCceEEE---EECCCCCccC---HHHHHHH
Confidence 99999999999999999999999999999 666788999999998732112377776 7889999887 4566777
Q ss_pred HHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEec--CcccccccCccceEEEEEcCCchhHHHHHHHHHH
Q psy14428 339 VKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQS--FSKNMGLYGERVGTFSVLTPTSDETERIMSQLKI 416 (583)
Q Consensus 339 a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S--~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~ 416 (583)
|+ +|++||+|+++......+. . .+ ..... -+.+.| .+|.++ +| +.|++++ ++ ++++++++.
T Consensus 152 a~-~~~~vi~D~a~a~g~~~~~--~--~~---g~~~~-d~~~~S~~~~K~l~-~g-~gG~~~~--~~----~~l~~~~~~ 214 (377)
T 3ju7_A 152 EK-KGVPVVVDAAPGFGLMNGG--M--HY---GQDFS-GMIIYSFHATKPFG-IG-EGGLIYS--KN----EEDIQRIKR 214 (377)
T ss_dssp HH-TTCCBEEECTTCTTCEETT--E--ET---TTTCS-SEEEEECBTTSSSC-CB-SCEEEEE--SC----HHHHHHHHH
T ss_pred Hh-cCCEEEEECCCccCCeECC--E--ec---cCCCC-cEEEEECCCCCcCC-CC-CcEEEEE--CC----HHHHHHHHH
Confidence 88 9999999999875432110 0 01 00011 134445 469998 45 7889888 65 478888776
Q ss_pred HHhc------------cccCCChHHHHHHHHHh
Q psy14428 417 LIRG------------FYSNPPIHGARIVTEIL 437 (583)
Q Consensus 417 ~~~~------------~~~~~s~~~q~~~~~~l 437 (583)
.... ..+..+.+.+.+....+
T Consensus 215 ~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l 247 (377)
T 3ju7_A 215 MGNFGFDTNRECTMMGFNCKMSEYAAAIGIATM 247 (377)
T ss_dssp HTBTTBCTTSCBCSSCCBCCCCHHHHHHHHHHH
T ss_pred HHhcCCCCCCceeeccccCCCCHHHHHHHHHHH
Confidence 6432 12345566555554444
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=5.2e-17 Score=174.48 Aligned_cols=257 Identities=11% Similarity=-0.038 Sum_probs=172.0
Q ss_pred CChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCC---CCeEEEecCCchhHHHHHHHHHHH-hC--
Q psy14428 182 VLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKD---NRLAIVQGISGSGSLRVGTAFLER-FY-- 255 (583)
Q Consensus 182 ~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~---~~I~i~~t~G~~~al~l~~~~l~~-~~-- 255 (583)
+.+.+.+++.+.+..+ ..+|....|..++++++.+++.+..|.+.+. ..+++ |+|+++|+.++...+.. ..
T Consensus 54 ~~~~v~e~~~~a~~~~-~~~~~~~~~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~--t~ggtea~~~al~a~~~~~~~~ 130 (452)
T 2dgk_A 54 DDENVHKLMDLSINKN-WIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTN--TIGSSEACMLGGMAMKWRWRKR 130 (452)
T ss_dssp CCHHHHHHHHHTTTCB-TTCTTTCHHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEE--ESSHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhccC-CCChhhChhHHHHHHHHHHHHHHHhCCCcccccCCceEE--eCCHHHHHHHHHHHHHHHHHHH
Confidence 4467888877766442 3457677788899999988888777765332 24888 99999999886333221 00
Q ss_pred --CCC-----CEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCC
Q psy14428 256 --PGV-----KTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLS 328 (583)
Q Consensus 256 --~~g-----d~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s 328 (583)
.+| ++|++++ +|..+...++..|++++.+|+ +++++.+|++.+++.+ .++++++++++|+||||.+.+
T Consensus 131 ~~~~G~~~~~~~vi~~~-~h~~~~~~~~~~G~~v~~v~~-~~~~~~~d~~~l~~~i---~~~t~~v~~~~~~n~tG~~~~ 205 (452)
T 2dgk_A 131 MEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPM-RPGQLFMDPKRMIEAC---DENTIGVVPTFGVTYTGNYEF 205 (452)
T ss_dssp HHHTTCCCSCCEEEESS-CCHHHHHHHHHTTCEEEECCC-BTTBCSCCHHHHHHHC---CTTEEEEECBBSCTTTCBBCC
T ss_pred HHhcCCCCCCcEEEECC-CcHHHHHHHHHcCceEEEEec-CCCCCeECHHHHHHHH---hhCCEEEEEEcCCcCCcccCC
Confidence 024 6999999 999999999999999999998 5445789999999988 567899999999999999976
Q ss_pred HHHHHHHHHHHHhc------CeEEEEeccCCCCCC---CCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEE
Q psy14428 329 EDQWRQLAVVVKQR------HLYPFFDMAYLGLTS---GDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSV 399 (583)
Q Consensus 329 ~~~~~~l~~~a~~~------~i~iI~De~Y~~l~~---~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~ 399 (583)
+++|.++|+++ ++++++|++|..+.. .+. ....+ ...+-.++..|++| +++.|.|+||+++
T Consensus 206 ---l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~--~~~~~----~~~~~d~~~~~~hK-~~~~~~~~G~~~~ 275 (452)
T 2dgk_A 206 ---PQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPD--IVWDF----RLPRVKSISASGHK-FGLAPLGCGWVIW 275 (452)
T ss_dssp ---HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTT--CCCST----TSTTEEEEEEETTT-TTCCCSSCEEEEE
T ss_pred ---HHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCcc--chhhc----CCCCCcEEEECccc-ccCCCCCeEEEEE
Confidence 55667778884 999999999998753 110 00000 11123456778899 6679999999999
Q ss_pred EcCCchhHHHHHHHHHHHHhcc------------ccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHh
Q psy14428 400 LTPTSDETERIMSQLKILIRGF------------YSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIR 461 (583)
Q Consensus 400 ~~p~~~~~~~li~~l~~~~~~~------------~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r 461 (583)
.+++ .+.+.+....... ......+.|+++...+....+++..++..+....+.+.++
T Consensus 276 --~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg~~g~~~~~~~~~~~a~~l~~~L~ 344 (452)
T 2dgk_A 276 --RDEE---ALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIA 344 (452)
T ss_dssp --SSGG---GSCGGGCEEECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --cCHH---HHHHHhccCccccCCCCCCcccCCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6432 1123321111110 0011455677777666555555555554444444444443
|
| >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.4e-15 Score=159.79 Aligned_cols=192 Identities=14% Similarity=0.110 Sum_probs=137.4
Q ss_pred CCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHh-----
Q psy14428 180 PYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERF----- 254 (583)
Q Consensus 180 p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~----- 254 (583)
+..++.+.+++.+.+.. ..|.+..+..+||+++|++++.. ++++ +++|++|+.++ +..+
T Consensus 11 ~~~~~~~~~a~~~~~~~---~~~~~~~~~~~l~~~la~~~~~~--------~~i~--~~sGt~a~~~a---l~~~~~~~~ 74 (390)
T 3b8x_A 11 STWDDLEYKAIQSVLDS---KMFTMGEYVKQYETQFAKTFGSK--------YAVM--VSSGSTANLLM---IAALFFTKK 74 (390)
T ss_dssp CCCCHHHHHHHHHHHHH---TCCSSCHHHHHHHHHHHHHHTCS--------EEEE--ESCHHHHHHHH---HHHTTSSSS
T ss_pred CCCCHHHHHHHHHHHHc---CCCCCChHHHHHHHHHHHHHCCC--------cEEE--ECCHHHHHHHH---HHHHHhhhh
Confidence 34567777887777654 24667888999999999999642 3455 66666888885 4444
Q ss_pred --CCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCC-CCCCCCCCCCHHH
Q psy14428 255 --YPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTS-SHNPTGVDLSEDQ 331 (583)
Q Consensus 255 --~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~-p~NPTG~~~s~~~ 331 (583)
..+||+|+++.|+|..+...++..|++++.+++ +++++.+|++.+++.+ .+++++++++| ++|| ..
T Consensus 75 ~~~~~g~~Vi~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~d~~~l~~~i---~~~~~~v~~~~~~g~~-------~~ 143 (390)
T 3b8x_A 75 PRLKKGDEIIVPAVSWSTTYYPLQQYGLRVKFVDI-DINTLNIDIESLKEAV---TDSTKAILTVNLLGNP-------NN 143 (390)
T ss_dssp CSCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECB-CTTTCSBCHHHHHHHC---CTTEEEEEEECGGGCC-------CC
T ss_pred cCCCCcCEEEECCCCcHHHHHHHHHcCCEEEEEec-CccccCcCHHHHHHHh---CcCCeEEEEECCccCh-------hh
Confidence 567999999999999999999999999999998 6555789999998887 45778888764 5555 45
Q ss_pred HHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecC----cccccccCccceEEEEEcCCchhH
Q psy14428 332 WRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSF----SKNMGLYGERVGTFSVLTPTSDET 407 (583)
Q Consensus 332 ~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~----SK~~~l~GlRiG~lv~~~p~~~~~ 407 (583)
+++|.++|+++|+++|+|++|......+. ...+....+.+| +|.++ +| +.|++++ ++
T Consensus 144 ~~~i~~l~~~~~~~li~D~a~~~g~~~~~-----------~~~g~~~~~~~~s~~~~k~~~-~g-~gG~~~~--~~---- 204 (390)
T 3b8x_A 144 FDEINKIIGGRDIILLEDNCESMGATFNN-----------KCAGTFGLMGTFSSFYSNHIA-TM-EGGCIVT--DD---- 204 (390)
T ss_dssp HHHHHHHHTTSCCEEEEECTTCTTCEETT-----------EETTSSSSEEEEECCTTSSSC-SS-SCEEEEE--SC----
T ss_pred HHHHHHHHHHcCCEEEEECcCcccCEECC-----------cccccccceEEEEccCCCCCc-cC-CceEEEe--CC----
Confidence 78889999999999999999984332110 011222223343 45553 33 4599998 64
Q ss_pred HHHHHHHHHH
Q psy14428 408 ERIMSQLKIL 417 (583)
Q Consensus 408 ~~li~~l~~~ 417 (583)
+++.+++...
T Consensus 205 ~~l~~~~~~~ 214 (390)
T 3b8x_A 205 EEIYHILLCI 214 (390)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3566666543
|
| >2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=6.2e-16 Score=163.03 Aligned_cols=202 Identities=8% Similarity=-0.040 Sum_probs=125.0
Q ss_pred CCccccCCccccCCCCCCCCChHHHHHHHHHhccCC-CCCCCCC--CCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCC
Q psy14428 163 PKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNL-DHEYANI--GGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGIS 239 (583)
Q Consensus 163 ~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~-~~~Y~~~--~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G 239 (583)
+..++++.|.. .+++.+.+++.+...... ...+.+. ....++|+.+++++ |.+ ++++|++ .|+|
T Consensus 39 ~~~~~~~~~~~-------~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----g~~-~~~~i~~-~t~g 105 (398)
T 2fyf_A 39 PRDGRFGSGPS-------KVRLEQLQTLTTTAAALFGTSHRQAPVKNLVGRVRSGLAELF----SLP-DGYEVIL-GNGG 105 (398)
T ss_dssp CSSCBCCSSSC-------CCCHHHHHGGGTTTTTTTTSCTTSHHHHHHHHHHHHHHHHHT----TCC-TTCEEEE-EETC
T ss_pred cCCccccCCCC-------CCCHHHHHHHhhcCCCccCcCcCCHHHHHHHHHHHHHHHHHh----CCC-CCceEEE-eCCc
Confidence 45566664432 255777777655210100 1122221 12456666666665 443 3456653 2899
Q ss_pred chhHHHHHHHHHHHhCCCCCEEEEcCCCChh-hHHHHhhc--CCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEe
Q psy14428 240 GSGSLRVGTAFLERFYPGVKTVYFPTPTWNG-HVRFCTDS--RLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQ 316 (583)
Q Consensus 240 ~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~-~~~~~~~~--G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i 316 (583)
+++++.++ +..+..+| .+.+..+.|.. ....+... |++++.+++ + ++...+.+ ..++++++++
T Consensus 106 ~t~al~~~---~~~l~~~g-v~~v~~~~~~~~~~~~~~~~~~g~~~~~v~~-~-~g~~~~~~--------i~~~~~~v~~ 171 (398)
T 2fyf_A 106 ATAFWDAA---AFGLIDKR-SLHLTYGEFSAKFASAVSKNPFVGEPIIITS-D-PGSAPEPQ--------TDPSVDVIAW 171 (398)
T ss_dssp HHHHHHHH---HHHTCSSC-EEEEECSHHHHHHHHHHHHCTTSCCCEEEEC-C-TTCCCCCC--------CCTTCSEEEE
T ss_pred hhHHHHHH---HHHhcCCC-eEEEeCCHHHHHHHHHHHHhCCCCceEEEec-C-CCCCCCcc--------ccCCCCEEEE
Confidence 99999985 44455656 22333333321 12234555 888888988 4 22222221 2567889999
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceE
Q psy14428 317 TSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGT 396 (583)
Q Consensus 317 ~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~ 396 (583)
++|+||||.+++.+++.++ +|++||+|++|..+...- + + +. ..+++.|+||.++++| ++||
T Consensus 172 ~~~~nptG~~~~~~~i~~~------~~~~vivD~a~~~~~~~~---~---~----~~--~di~~~s~sK~~~~~g-g~g~ 232 (398)
T 2fyf_A 172 AHNETSTGVAVAVRRPEGS------DDALVVIDATSGAGGLPV---D---I----AE--TDAYYFAPQKNFASDG-GLWL 232 (398)
T ss_dssp ESEETTTTEECCCCCCTTC------C-CEEEEECTTTTTTSCC---C---G----GG--CSEEEECTTSTTCSCS-SEEE
T ss_pred eCcCCCcceecchHHhhhh------cCCeEEEEeccccCCccc---C---c----cc--CcEEEEecCcccCCCC-ceEE
Confidence 9999999999998887665 899999999998765321 1 1 11 3478999999999776 6999
Q ss_pred EEEEcCCchhHHHHHHHHHHH
Q psy14428 397 FSVLTPTSDETERIMSQLKIL 417 (583)
Q Consensus 397 lv~~~p~~~~~~~li~~l~~~ 417 (583)
+++ + +++++++.+.
T Consensus 233 l~~--~-----~~~~~~l~~~ 246 (398)
T 2fyf_A 233 AIM--S-----PAALSRIEAI 246 (398)
T ss_dssp EEE--C-----HHHHHHHHHH
T ss_pred EEE--C-----HHHHHHhhcc
Confidence 999 6 5777777654
|
| >2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.68 E-value=4.6e-16 Score=165.57 Aligned_cols=182 Identities=16% Similarity=0.087 Sum_probs=133.8
Q ss_pred CChHHHHHHHHHhccCCCCCCCCCC--CCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCC
Q psy14428 182 VLPSVKEAERRIYEKNLDHEYANIG--GDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVK 259 (583)
Q Consensus 182 ~~~~v~~a~~~~~~~~~~~~Y~~~~--G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd 259 (583)
..+.+.++............|.... ...+|+++++++++.. +.|++ ++| ++|+.++ +..+..+||
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~g~~-------~~v~~--~sG-t~A~~~~---l~~~~~~gd 98 (421)
T 2ctz_A 32 VFKSPEHAANLFALKEFGNIYSRIMNPTVDVLEKRLAALEGGK-------AALAT--ASG-HAAQFLA---LTTLAQAGD 98 (421)
T ss_dssp CCSCHHHHHHHHTTTTGGGSCBTTBCHHHHHHHHHHHHHHTCS-------EEEEE--SSH-HHHHHHH---HHHHCCTTC
T ss_pred eeCCHHHHHHhhccccCCCcccCCCChHHHHHHHHHHHHhCCC-------ceEEe--cCH-HHHHHHH---HHHHhCCCC
Confidence 3445555443322111134455332 3588999999999642 34555 555 8999885 344466799
Q ss_pred EEEEcCCCChhhHHHH----hhcCCeEEEE-ecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHH
Q psy14428 260 TVYFPTPTWNGHVRFC----TDSRLNVGAY-RYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQ 334 (583)
Q Consensus 260 ~Vlv~~P~y~~~~~~~----~~~G~~~~~v-~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~ 334 (583)
+|+++.|+|..+...+ +..|++++.+ +. + |++.+++.+ .++++++++++|+||||.+++ +++
T Consensus 99 ~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~------d~~~l~~~i---~~~~~~v~~~~~~n~~G~~~~---l~~ 165 (421)
T 2ctz_A 99 NIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSRE-E------RPEEFLALT---DEKTRAWWVESIGNPALNIPD---LEA 165 (421)
T ss_dssp EEEECSCCCHHHHHHHHTHHHHTTCEEEECCTT-C------CHHHHHHHC---CTTEEEEEEESSCTTTCCCCC---HHH
T ss_pred EEEEeCCCchHHHHHHHHHHHHcCCEEEEECCC-C------CHHHHHHhh---ccCCeEEEEECCCCCCCcccC---HHH
Confidence 9999999999887765 7789999988 66 2 788888877 568899999999999999998 778
Q ss_pred HHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEE
Q psy14428 335 LAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSV 399 (583)
Q Consensus 335 l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~ 399 (583)
|.++|+++|+++|+|++|..+.+.. .+ + . .+..+++.|+||.++.+|.|+|++++
T Consensus 166 i~~~a~~~g~~livD~~~~~~g~~~---~~--~----~-~~~Di~~~s~~K~l~~~g~~~G~~~~ 220 (421)
T 2ctz_A 166 LAQAAREKGVALIVDNTFGMGGYLL---RP--L----A-WGAALVTHSLTKWVGGHGAVIAGAIV 220 (421)
T ss_dssp HHHHHHHHTCEEEEECGGGGGGTSC---CG--G----G-GTCSEEEEETTTTTTCSSCCCCEEEE
T ss_pred HHHHHHHcCCEEEEECCcccccccC---Cc--c----c-cCCeEEEECCcccccCCCCcEEEEEE
Confidence 8999999999999999992232322 11 1 1 23568999999999999999999998
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 | Back alignment and structure |
|---|
Probab=99.66 E-value=7.6e-16 Score=165.58 Aligned_cols=223 Identities=12% Similarity=0.038 Sum_probs=146.2
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCeEEEecCCchh-HHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecc
Q psy14428 210 KFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSG-SLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYF 288 (583)
Q Consensus 210 ~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~-al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~ 288 (583)
++|+.+++++ |.+ ++ +++ |+|+++ ++.++...+.... +|+.|++++|.|..+...++..|++++.+++.
T Consensus 137 ~~~~~la~~~----g~~--~~-~~~--t~g~te~a~~~al~~~~~~~-~~~~vi~~~~~h~s~~~~~~~~G~~~~~v~~~ 206 (456)
T 2z67_A 137 KILESFFKQL----GLN--VH-AIA--TPISTGMSISLCLSAARKKY-GSNVVIYPYASHKSPIKAVSFVGMNMRLVETV 206 (456)
T ss_dssp HHHHHHHHHT----TCC--CE-EEE--ESSCHHHHHHHHHHHHHHHH-CCCEEEEECCCCHHHHHHHHHTTCEEEEECCE
T ss_pred HHHHHHHHHc----CCC--CC-EEE--eCcHHHHHHHHHHHHHHHhc-CCCEEEEECCCcHHHHHHHHHcCCCceEEEEe
Confidence 3555555554 433 34 888 999995 4443321222212 47889999999999999999999999988862
Q ss_pred c-CCCCCCChhhHHHHHHcC--CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchH
Q psy14428 289 D-NKTNGLDFAGMMEDIKAM--PERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAF 365 (583)
Q Consensus 289 d-~~~~g~d~~~l~~~l~~~--~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~ 365 (583)
. .+++.+|++.+++.++.. ..+++++++++||||||.+.+ +++|.++|+++|+++++|++|..+..+- .+
T Consensus 207 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~---l~~I~~la~~~g~~v~vD~A~~~~~~g~----~~ 279 (456)
T 2z67_A 207 LDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDD---IVEIAKICENYDIPHIINGAYAIQNNYY----LE 279 (456)
T ss_dssp EETTEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTTCHHH----HH
T ss_pred ccCCCCCcCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCC---HHHHHHHHHHcCCcEEEECcchHHHHHh----hH
Confidence 1 234678999999998321 236778888999999999966 5666888999999999999998876421 11
Q ss_pred HHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhh
Q psy14428 366 SLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQ 445 (583)
Q Consensus 366 ~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~ 445 (583)
........... +++.|++|.++ .+.++||+++ .+ +++++.+...........+.+.+.++...+....+++.
T Consensus 280 ~~~~~~~~~~D-~~~~s~hK~~~-~p~g~G~l~~--~~----~~~~~~l~~~~~g~~~~~~~~~~~aal~~l~~~~~~~~ 351 (456)
T 2z67_A 280 KLKKAFKYRVD-AVVSSSDKNLL-TPIGGGLVYS--TD----AEFIKEISLSYPGRASATPVVNTLVSLLSMGSKNYLEL 351 (456)
T ss_dssp HHHHHHTSCCS-EEEEEHHHHHC-CCSSCEEEEE--SC----HHHHHHHHTTSCSCBCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhCCCCC-EEEEcCCCCcC-CCCCeEEEEE--cC----HHHHhhcCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 11111111223 56789999765 6799999999 65 36777664322111122346667777777765555555
Q ss_pred hhhHHHHHHHHH
Q psy14428 446 CDETERIMSQLK 457 (583)
Q Consensus 446 ~~~~~~~~~~l~ 457 (583)
.++.++..+.+.
T Consensus 352 ~~~~~~~~~~l~ 363 (456)
T 2z67_A 352 VKNQKNSKKLLD 363 (456)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 554444444433
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=5.2e-16 Score=168.22 Aligned_cols=261 Identities=9% Similarity=-0.033 Sum_probs=175.1
Q ss_pred CChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCC-------CCCeEEEecCCchhHHHHHHHHHHHh
Q psy14428 182 VLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFK-------DNRLAIVQGISGSGSLRVGTAFLERF 254 (583)
Q Consensus 182 ~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~-------~~~I~i~~t~G~~~al~l~~~~l~~~ 254 (583)
++..+.+++...... ....|....+..++++++++++.+..|.+.+ ...+++ |+|+++|+.++...+...
T Consensus 86 ~~~~~~~~~~~~~n~-~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~--t~ggTeA~~~al~~~~~~ 162 (486)
T 1js3_A 86 YPAMLADMLCGAIGC-IGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVI--QGSASEATLVALLAARTK 162 (486)
T ss_dssp HHHHHHHHHHHHHCC-CCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEE--ESCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCc-CccccccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEE--cCCcHHHHHHHHHHHHHH
Confidence 345677777776643 2566777778899999999999887776642 356888 999999988763332211
Q ss_pred -CC-----CC---------C-EEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCC---CCcEEEE
Q psy14428 255 -YP-----GV---------K-TVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMP---ERSILFL 315 (583)
Q Consensus 255 -~~-----~g---------d-~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~---~~~~~i~ 315 (583)
.+ .| + .|++++++|..+...++..|++++.+|+ | +++.+|++.+++.+...+ ....+++
T Consensus 163 ~~~~~~~~~gd~~~~~~~~~~~v~~s~~~h~s~~~~~~~~G~~v~~v~~-d-~~~~~d~~~L~~~i~~~~~~g~~p~~vv 240 (486)
T 1js3_A 163 VVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPS-D-GKFAMRASALQEALERDKAAGLIPFFVV 240 (486)
T ss_dssp HHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHHHTCEEEEECC-C-TTSCCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HhhhhhccCccchhcccCCCEEEEECCCCcHHHHHHHHhCCCceEEeec-C-CCCCCCHHHHHHHHHHHHhCCCCceEEE
Confidence 11 03 2 3788999999999999999999999998 5 357899999999995432 1235888
Q ss_pred eCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHH-HHHHHHhcCcEEEEecCcccccccCccc
Q psy14428 316 QTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFS-LRYFAKEVGQLCLAQSFSKNMGLYGERV 394 (583)
Q Consensus 316 i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~-~~~~~~~~~~vi~i~S~SK~~~l~GlRi 394 (583)
+++|+||||.+ +++++|+++|+++|+++++|++|+.+.+... .... +..+ . .-..+ ..|++|.+++| +++
T Consensus 241 ~~~~~n~tG~~---~~l~~I~~la~~~~~~lhvD~a~g~~~~~~~--~~~~~~~g~-~-~adsi-~~~~hK~~~~p-~~~ 311 (486)
T 1js3_A 241 ATLGTTSCCSF---DNLLEVGPICHEEDIWLHVDAAYAGSAFICP--EFRHLLNGV-E-FADSF-NFNPHKWLLVN-FDC 311 (486)
T ss_dssp EEBSCTTTCCB---CCHHHHHHHHHHTTCEEEEECTTGGGGGGST--TTGGGGTTG-G-GCSEE-EECHHHHSSCC-SSC
T ss_pred EeCCCCCCCCC---CCHHHHHHHHHHcCCEEEEehhhHHHHHHCH--HHHHHhcCc-c-ccCee-EEchhhhcCCC-cce
Confidence 99999999976 5688889999999999999999987654220 1111 1111 1 12334 46789999866 899
Q ss_pred eEEEEEcCCchhHHHHHHHHHHHHh---c-----------------cccCCChHHHHHHHHHhCChhhhhhhhhHHHHHH
Q psy14428 395 GTFSVLTPTSDETERIMSQLKILIR---G-----------------FYSNPPIHGARIVTEILSDPKLKAQCDETERIMS 454 (583)
Q Consensus 395 G~lv~~~p~~~~~~~li~~l~~~~~---~-----------------~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~ 454 (583)
||+++ .++. .+.+.+..... . .......+.++++...+....+++..++..+...
T Consensus 312 G~l~~--~~~~---~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~al~~~g~~g~~~~~~~~~~~a~ 386 (486)
T 1js3_A 312 SAMWV--KRRT---DLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSH 386 (486)
T ss_dssp EEEEE--SCHH---HHHGGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEE--eCHH---HHHHHhcCCchhhCCCcccccCCCCccccCCCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 99999 7532 22333311000 0 0012346777777777765566666655555444
Q ss_pred HHHHHHh
Q psy14428 455 QLKILIR 461 (583)
Q Consensus 455 ~l~~~~r 461 (583)
.+.+.++
T Consensus 387 ~l~~~L~ 393 (486)
T 1js3_A 387 EFEAFVL 393 (486)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 4444443
|
| >3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=5.1e-15 Score=161.34 Aligned_cols=206 Identities=12% Similarity=-0.017 Sum_probs=154.2
Q ss_pred hHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHH-hC-------
Q psy14428 184 PSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLER-FY------- 255 (583)
Q Consensus 184 ~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~-~~------- 255 (583)
..+.+++....... ...|....+..+|++++++|+.+..|.+..++.+++ |+|+++|+..+...+.. +.
T Consensus 110 ~~~~e~l~~~~~~~-~~~~~~~p~~~~le~~~~~~l~~~~g~~~~~~~~~~--t~ggt~a~~~al~~a~~~~~~~~~~~G 186 (511)
T 3vp6_A 110 GLAGEWLTSTANTN-MFTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIF--SPGGAISNMYSIMAARYKYFPEVKTKG 186 (511)
T ss_dssp HHHHHHHHHHHCCC-SSCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEE--ESSHHHHHHHHHHHHHHHHCTHHHHHC
T ss_pred HHHHHHHHHHhccC-CCCcccCchHHHHHHHHHHHHHHHhCCCCCCCceEE--CCchHHHHHHHHHHHHHHhhhhhhhcC
Confidence 34556666555432 567888899999999999999988888776789999 99999998776333222 10
Q ss_pred ---CCCCEEEEcCCCChhhHHHHhhcCC---eEEEEecccCCCCCCChhhHHHHHHcC---CCCcEEEEeCCCCCCCCCC
Q psy14428 256 ---PGVKTVYFPTPTWNGHVRFCTDSRL---NVGAYRYFDNKTNGLDFAGMMEDIKAM---PERSILFLQTSSHNPTGVD 326 (583)
Q Consensus 256 ---~~gd~Vlv~~P~y~~~~~~~~~~G~---~~~~v~~~d~~~~g~d~~~l~~~l~~~---~~~~~~i~i~~p~NPTG~~ 326 (583)
.+++.|++++++|..+...++..|+ +++.+|. |+ ++.+|++.+++++.+. ..++++++++.|+||||.+
T Consensus 187 ~~~~~~~~v~~s~~~H~s~~~~~~~~g~g~~~~~~v~~-d~-~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~v 264 (511)
T 3vp6_A 187 MAAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKC-NE-RGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAF 264 (511)
T ss_dssp GGGSCCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECB-CT-TSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCB
T ss_pred cccCCCeEEEECCCchHHHHHHHHHcCCCCCcEEEeec-CC-CCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCccc
Confidence 1367999999999999999999998 8999998 54 4789999999998643 2237899999999999998
Q ss_pred CCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCc
Q psy14428 327 LSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTS 404 (583)
Q Consensus 327 ~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~ 404 (583)
+++++|+++|+++|+++++|++|........ +-...+. ....--+++.+++|.++.| ..+|++++ .++
T Consensus 265 ---d~l~~I~~ia~~~~~~lhvD~a~~~~~~~~~-~~~~~~~---g~~~aDsv~~~~hK~l~~p-~g~g~l~~--~~~ 332 (511)
T 3vp6_A 265 ---DPIQEIADICEKYNLWLHVDAAWGGGLLMSR-KHRHKLN---GIERANSVTWNPHKMMGVL-LQCSAILV--KEK 332 (511)
T ss_dssp ---CCHHHHHHHHHHHTCEEEEEETTGGGGGGCT-TTGGGGT---TGGGCSEEEECTTSTTCCC-SCCEEEEE--SST
T ss_pred ---ccHHHHHHHHHHcCCEEEEEccchhhHhhCh-hhhhhcc---CCccCCEEEECcccccCCC-cCeEEEEE--eCH
Confidence 4578889999999999999999987654221 0001110 0111134557999999855 78899999 653
|
| >2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=2.3e-17 Score=176.93 Aligned_cols=283 Identities=14% Similarity=0.053 Sum_probs=177.4
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
.+...||+..|.+....|. ..+.+.+++.+.+.......| +..-..+|.+.+++++. ..+++++ +++|
T Consensus 98 dG~~yiD~~~~~~~~~lGh--~~p~V~~Av~~q~~~~~~~~~-~~~~~~~Lae~L~~~~p-------~~~~v~~--~nSG 165 (465)
T 2yky_A 98 DGHAYVNFLGEYTAGLFGH--SHPVIRAAVERALAVGLNLST-QTENEALFAEAVCDRFP-------SIDLVRF--TNSG 165 (465)
Confidence 3456788888777544553 235666666655544222233 33445667777776652 2478999 9999
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHh----hcCC--eEEEEecccCCCCCCChhhHHHHHHcCCCCcEEE
Q psy14428 241 SGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCT----DSRL--NVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILF 314 (583)
Q Consensus 241 ~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~----~~G~--~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i 314 (583)
++|+..+..+++.+ .+++.|++.+++|..+..... ..|+ .++.+|. -|++.+++.+++..++++++
T Consensus 166 seA~~~Aik~ar~~-tgr~~ii~~~~~yHG~~~~~~sg~~~~g~~~~~~~~~~-------~d~~~l~~~l~~~~~~~aav 237 (465)
T 2yky_A 166 TEANLMALATATAI-TGRKTVLAFDGGYHGGLLNFASGHAPTNAPYHVVLGVY-------NDVEGTADLLKRHGHDCAAI 237 (465)
Confidence 99999864443322 336999999999977654322 1233 2333333 16777877775433456666
Q ss_pred EeCCCCCCCCCC-CCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCcc
Q psy14428 315 LQTSSHNPTGVD-LSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGER 393 (583)
Q Consensus 315 ~i~~p~NPTG~~-~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlR 393 (583)
++...+|+||.+ .+++.+++|.++|+++|+++|+||+|. +..+. .... +..+.+..+.||||.+| .|+|
T Consensus 238 i~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~r~g~----~~a~----~~~gv~pDi~t~sK~lg-~G~p 307 (465)
T 2yky_A 238 LVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-SRLSG----GGAQ----EMLGISADLTTLGKYIG-GGMS 307 (465)
Confidence 655446669965 468899999999999999999999999 74321 1111 11223344569999999 5999
Q ss_pred ceEEEEEcCCchhHHHHHHHHHH-----HHhccccCCChHHHHHHHHHhC---ChhhhhhhhhHHH-HHHHHHHHHhh--
Q psy14428 394 VGTFSVLTPTSDETERIMSQLKI-----LIRGFYSNPPIHGARIVTEILS---DPKLKAQCDETER-IMSQLKILIRG-- 462 (583)
Q Consensus 394 iG~lv~~~p~~~~~~~li~~l~~-----~~~~~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~-~~~~l~~~~r~-- 462 (583)
+||+++ + +++++.+.. ......++.++++|.++...++ ++.+.+++.++.. +.+.++.+...
T Consensus 308 iG~v~~--~-----~~i~~~l~~~~~g~~~~~~T~~~npla~aAa~aaL~~l~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 380 (465)
T 2yky_A 308 FGAFGG--R-----RDLMERFDPARDGAFAHAGTFNNNILTMSAGHAALTQIYTRQAASDLSASGDRFRANLNRIAVENQ 380 (465)
Confidence 999999 6 478888876 2233456778888888766654 4444444444332 23333333221
Q ss_pred ccCCCccchhhHHHHhcC
Q psy14428 463 FYSNPPIHGARIVTEILS 480 (583)
Q Consensus 463 ~~~~~p~~g~~i~~~~l~ 480 (583)
.....+..|.++++.+..
T Consensus 381 ~~~~v~g~G~~~~i~~~~ 398 (465)
T 2yky_A 381 APLQFTGLGSLGTIHFSR 398 (465)
Confidence 112345678888776643
|
| >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.61 E-value=7.3e-16 Score=165.24 Aligned_cols=167 Identities=10% Similarity=-0.037 Sum_probs=119.8
Q ss_pred CCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCe
Q psy14428 202 YANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLN 281 (583)
Q Consensus 202 Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~ 281 (583)
|.+.....++++.+|+ ++ .. +++++ |+|+++|+.++ +..++.+||+|++++|+|..+...+...|++
T Consensus 53 ~~~~~~~~~~~~~la~-~g----~~---~~v~~--~~G~t~a~~~~---~~a~~~~gd~Vlv~~~~h~s~~~~~~~~G~~ 119 (446)
T 2x3l_A 53 HHPEEVILKSMKQVEK-HS----DY---DGYFL--VNGTTSGILSV---IQSFSQKKGDILMARNVHKSVLHALDISQQE 119 (446)
T ss_dssp TSCSSHHHHHHHHHCS-CT----TE---EEEEE--SSHHHHHHHHH---HHTTTTSSSCEEECTTCCHHHHHHHHHHTCC
T ss_pred cCcchHHHHHHHHHHh-cC----CC---ceEEE--eCCHHHHHHHH---HHHhcCCCCEEEEecCccHHHHHHHHHcCCe
Confidence 4455556777777776 53 22 67899 99999999985 4556677999999999999999999999999
Q ss_pred EEEEecccCCC----CCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCC-CC
Q psy14428 282 VGAYRYFDNKT----NGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLG-LT 356 (583)
Q Consensus 282 ~~~v~~~d~~~----~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~-l~ 356 (583)
++.++....++ +++|++.+ + .++++++++++ +||||.+++ +++|+++|+++|++||+||+|.. +.
T Consensus 120 ~~~v~~~~~~~~~~~~~~d~~~l---~---~~~~~~v~~~~-~n~~G~~~~---l~~I~~l~~~~~~~livDea~~~~~~ 189 (446)
T 2x3l_A 120 GHFIETHQSPLTNHYNKVNLSRL---N---NDGHKLVVLTY-PNYYGETFN---VEEVIKSLHQLNIPVLIDEAHGAHFG 189 (446)
T ss_dssp EEECEEEECTTTSSEEEEEC-------------CCEEEEES-SCTTSCCCC---HHHHHHHHHHTTCCEEEECTTCTTTT
T ss_pred EEEEeCeeccccCcCCCCCHHHH---c---CCCceEEEEEC-CCCCeEecC---HHHHHHHHHhcCCeEEEcchhhhhhc
Confidence 99988721222 35677766 2 45678888888 667999998 56788999999999999999986 44
Q ss_pred CCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEE
Q psy14428 357 SGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSV 399 (583)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~ 399 (583)
|.+ . +.+... . +.-+++.|+||+++ ++.++||+++
T Consensus 190 f~~--~-~~~~~~---~-g~Di~~~S~~K~l~-~~~g~g~l~~ 224 (446)
T 2x3l_A 190 LQG--F-PDSTLN---Y-QADYVVQSFHKTLP-ALTMGSVLYI 224 (446)
T ss_dssp STT--S-CCCGGG---G-TCSEEEECHHHHSS-SCTTCEEEEE
T ss_pred cCC--C-CCChHH---c-CCCEEEECCccccc-cccccEEEEE
Confidence 443 1 111111 1 22389999999664 4456899999
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.7e-15 Score=163.21 Aligned_cols=278 Identities=9% Similarity=-0.012 Sum_probs=177.9
Q ss_pred CCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeE-EEecCCchhHHHHHHHHHHHh-C---
Q psy14428 181 YVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLA-IVQGISGSGSLRVGTAFLERF-Y--- 255 (583)
Q Consensus 181 ~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~-i~~t~G~~~al~l~~~~l~~~-~--- 255 (583)
++++.+.+++.+.+... ...|....+..++++.+.+++.+..|.+.+++++. .+.|+|+++++.++...+..- .
T Consensus 67 ~~~~~v~~~l~~~~~~~-~~~~~~~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~ 145 (502)
T 3hbx_A 67 WMEPECDKLIMSSINKN-YVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKR 145 (502)
T ss_dssp CCCHHHHHHHHHTTTCB-TTCTTTCHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhccC-CCChhcChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHHHHhHHH
Confidence 35678888887766542 33454555678888888888887777765455443 223889999998763322111 0
Q ss_pred -CCCC-----EEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCH
Q psy14428 256 -PGVK-----TVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSE 329 (583)
Q Consensus 256 -~~gd-----~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~ 329 (583)
.+|+ .|++++++|..+...++..|++++.+|+ +++++.+|++.+++.+ .++++++++++|+||||.+.+.
T Consensus 146 ~~~G~~~~~~~vi~~~~~h~s~~~~~~~~G~~~~~v~~-~~~~~~~d~~~l~~~i---~~~t~~v~~~~~~n~tG~~~~l 221 (502)
T 3hbx_A 146 KAEGKPVDKPNIVTGANVQVCWEKFARYFEVELKEVKL-SEGYYVMDPQQAVDMV---DENTICVAAILGSTLNGEFEDV 221 (502)
T ss_dssp HHTTCCCSCCEEEEETTCCHHHHHHHHHTTCEEEEECC-BTTBCSCCHHHHHHHC---CTTEEEEEEEBSCTTTCCBCCH
T ss_pred HhcCCCCCCcEEEEcCCchHHHHHHHHHcCceeEEEec-CCCcCcCCHHHHHHHH---hhCCEEEEEecCCCCCCcccCH
Confidence 0255 9999999999999999999999999998 5555789999999887 5678999999999999999764
Q ss_pred HHHHHHHHHHHhc------CeEEEEeccCCCCC----CCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEE
Q psy14428 330 DQWRQLAVVVKQR------HLYPFFDMAYLGLT----SGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSV 399 (583)
Q Consensus 330 ~~~~~l~~~a~~~------~i~iI~De~Y~~l~----~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~ 399 (583)
++|.++|+++ ++++++|++|..+. .+.. ...+ ...+-.++..|..|.++ .+.++||+++
T Consensus 222 ---~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~---~~~~----~~~~~D~v~~s~hK~l~-~p~g~G~~~~ 290 (502)
T 3hbx_A 222 ---KLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPEL---EWDF----RLPLVKSINVSGHKYGL-VYAGIGWVIW 290 (502)
T ss_dssp ---HHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTC---CCST----TSTTEEEEEEETTTTTC-CCSSCEEEEE
T ss_pred ---HHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCccc---cccc----CCCCceEEEECcccccC-CCCCeEEEEE
Confidence 5567778888 99999999998765 2210 0000 11123456678888664 7889999998
Q ss_pred EcCCchhHHHHH-HHHHHHHhccc---------c---CCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhc--c
Q psy14428 400 LTPTSDETERIM-SQLKILIRGFY---------S---NPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGF--Y 464 (583)
Q Consensus 400 ~~p~~~~~~~li-~~l~~~~~~~~---------~---~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~--~ 464 (583)
.++ .++ +.+........ . ....+.|+++...+....+.+..++..+....+.+.++.. +
T Consensus 291 --~~~----~~l~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~ 364 (502)
T 3hbx_A 291 --RNK----EDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEKTERF 364 (502)
T ss_dssp --SSG----GGSCGGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCE
T ss_pred --eCH----HHhhHHhccCcccccCCCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCE
Confidence 543 222 11111000000 0 1134567677666665555555555444444444444322 3
Q ss_pred C-CCc-cchhhHHHHhcC
Q psy14428 465 S-NPP-IHGARIVTEILS 480 (583)
Q Consensus 465 ~-~~p-~~g~~i~~~~l~ 480 (583)
. ..+ ...+++.+.+..
T Consensus 365 ~~~~~~~~~~~v~f~~~~ 382 (502)
T 3hbx_A 365 NIVSKDEGVPLVAFSLKD 382 (502)
T ss_dssp EECSCSSSSSEEEEEESS
T ss_pred EEEeCCCCceEEEEEecC
Confidence 3 222 345555555443
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=7.1e-15 Score=160.07 Aligned_cols=255 Identities=11% Similarity=-0.015 Sum_probs=171.9
Q ss_pred HHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHh-C----CCC---
Q psy14428 187 KEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERF-Y----PGV--- 258 (583)
Q Consensus 187 ~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~-~----~~g--- 258 (583)
.+.+...... ....|....+..++++++.+++.+..|.+.+++++++ |+|+++|+.++...++.. . .+|
T Consensus 110 ~~~l~~~~n~-~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~~--t~ggtea~~~al~~~~~~~~~~~~~~G~~~ 186 (504)
T 2okj_A 110 GEWLTSTANT-NMFTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIF--SPGGAISNMYSIMAARYKYFPEVKTKGMAA 186 (504)
T ss_dssp HHHHHHHHCC-BSSCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEE--ESSHHHHHHHHHHHHHHHHCTTHHHHCGGG
T ss_pred HHHHHHhhcc-CCCchhhChHHHHHHHHHHHHHHHHhCCCCCCCCEEE--eCCcHHHHHHHHHHHHHHHhhHHhhcCccc
Confidence 3444443332 2355766677778888887777766666544789999 999999998864443221 0 135
Q ss_pred --C-EEEEcCCCChhhHHHHhhcCC---eEEEEecccCCCCCCChhhHHHHHHcC---CCCcEEEEeCCCCCCCCCCCCH
Q psy14428 259 --K-TVYFPTPTWNGHVRFCTDSRL---NVGAYRYFDNKTNGLDFAGMMEDIKAM---PERSILFLQTSSHNPTGVDLSE 329 (583)
Q Consensus 259 --d-~Vlv~~P~y~~~~~~~~~~G~---~~~~v~~~d~~~~g~d~~~l~~~l~~~---~~~~~~i~i~~p~NPTG~~~s~ 329 (583)
+ .|++++++|..+...++..|. +++.+|+ ++ ++.+|++.+++.+.+. ..+++++++++|+||||.+.+
T Consensus 187 ~~~~~v~~s~~~h~s~~~~~~~~g~g~~~v~~v~~-~~-~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~- 263 (504)
T 2okj_A 187 VPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKC-NE-RGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP- 263 (504)
T ss_dssp SCCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECB-CT-TSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCC-
T ss_pred cCCeEEEECCcchHHHHHHHHHcCCCcccEEEEec-CC-CCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCC-
Confidence 6 799999999999999988877 8999998 54 4789999999988542 225789999999999999865
Q ss_pred HHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCch-HHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHH
Q psy14428 330 DQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDA-FSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETE 408 (583)
Q Consensus 330 ~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~-~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~ 408 (583)
+++|.++|+++|+++++|++|..+..... .. ..+..+ . .. -+++.|++|.++.| .++|++++ .++
T Consensus 264 --l~~I~~la~~~g~~lhvD~a~~~~~~~~~--~~~~~~~g~-~-~~-D~i~~~~hK~~~~p-~~~g~l~~--~~~---- 329 (504)
T 2okj_A 264 --IQEIADICEKYNLWLHVDAAWGGGLLMSR--KHRHKLNGI-E-RA-NSVTWNPHKMMGVL-LQCSAILV--KEK---- 329 (504)
T ss_dssp --HHHHHHHHHHHTCEEEEEETTGGGGGGCT--TTGGGGTTG-G-GC-SEEEECTTSTTCCC-SCCEEEEE--SST----
T ss_pred --HHHHHHHHHHcCCEEEEehhhhhHHHhCH--hhHhhcCCc-c-cC-CEEEECchhhcCCC-cceEEEEE--ECH----
Confidence 66778899999999999999998775421 11 111111 1 12 25677899999866 79999999 653
Q ss_pred HHHHHHHHH-Hhcccc--------------------CCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHh
Q psy14428 409 RIMSQLKIL-IRGFYS--------------------NPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIR 461 (583)
Q Consensus 409 ~li~~l~~~-~~~~~~--------------------~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r 461 (583)
++++..... ...... ....+.++++...+....+++..++..+..+.+.+.++
T Consensus 330 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~rr~~~l~~~a~l~~lg~~g~~~~~~~~~~~a~~l~~~L~ 403 (504)
T 2okj_A 330 GILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIK 403 (504)
T ss_dssp THHHHHHCCCCSSSCCSCCSSCGGGCCGGGSSCSSCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCccccCCcccccCcCCcccCCCCCCCCccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344432211 111100 12467777777777655566665555555555555444
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.3e-14 Score=157.59 Aligned_cols=277 Identities=10% Similarity=0.001 Sum_probs=175.0
Q ss_pred CChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHH-hC-----
Q psy14428 182 VLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLER-FY----- 255 (583)
Q Consensus 182 ~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~-~~----- 255 (583)
.++.+.+++.....+.....|....+..++.+++.+++.+..|.+ ..+++++ |+|+++|+.++...++. +.
T Consensus 112 ~~~~v~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~~la~~~g~~-~~~~~~~--t~ggt~a~~~al~~ar~~~~~~~~~ 188 (497)
T 2qma_A 112 LMPAVAAEAMIAALNQSMDSWDQASSATYVEQKVVNWLCDKYDLS-EKADGIF--TSGGTQSNQMGLMLARDWIADKLSG 188 (497)
T ss_dssp BHHHHHHHHHHHHHCCCTTCGGGCHHHHHHHHHHHHHHHHHTTCC-TTCEEEE--ESSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHhhcccccchhhChHHHHHHHHHHHHHHHHhCCC-CCCCeEE--cCCchHHHHHHHHHHHHHHHHhhcc
Confidence 445555554333323224456555677788888777777666653 2378999 99999999886444221 11
Q ss_pred ----CC------CC-EEEEcCCCChhhHHHHhhcCC---eEEEEecccCCCCCCChhhHHHHHHcC---CCCcEEEEeCC
Q psy14428 256 ----PG------VK-TVYFPTPTWNGHVRFCTDSRL---NVGAYRYFDNKTNGLDFAGMMEDIKAM---PERSILFLQTS 318 (583)
Q Consensus 256 ----~~------gd-~Vlv~~P~y~~~~~~~~~~G~---~~~~v~~~d~~~~g~d~~~l~~~l~~~---~~~~~~i~i~~ 318 (583)
.+ || .|+++.+++..+...++..|. +++.+|+ ++ ++.+|++.+++.+++. ..++.+++++.
T Consensus 189 ~~~~~~G~~~~~g~~~v~~s~~~h~s~~~~~~~~g~g~~~v~~v~~-~~-~~~~d~~~L~~~i~~~~~~~~~~~~vv~~~ 266 (497)
T 2qma_A 189 HSIQKLGLPDYADKLRIVCSKKSHFTVQKSASWMGLGEKAVMTVDA-NA-DGTMDITKLDEVIAQAKAEGLIPFAIVGTA 266 (497)
T ss_dssp CCHHHHCSCGGGGGEEEEEETTSCTHHHHHHHHTTSCGGGEEEECB-CT-TSSBCGGGHHHHHHHHHHTTCEEEEEEEEB
T ss_pred cchhhcccccccCCeEEEECCCchHHHHHHHHHcCCCcccEEEEec-CC-CCcCCHHHHHHHHHHHHHCCCcceEEEEcC
Confidence 01 46 899999999988888888876 8999998 54 4789999999998642 11244788899
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHH-HHHHHHhcCcEEEEecCcccccccCccceEE
Q psy14428 319 SHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFS-LRYFAKEVGQLCLAQSFSKNMGLYGERVGTF 397 (583)
Q Consensus 319 p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~-~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~l 397 (583)
++||||.+-+ +++|.++|+++|+++++|++|..+.... +... +..+ + .--+++.|++|.++.| .++|++
T Consensus 267 ~~~~tG~~~~---l~~I~~l~~~~~~~l~vD~a~~~~~~~~---~~~~~~~gi-~--~~D~i~~s~hK~l~~p-~~~G~l 336 (497)
T 2qma_A 267 GTTDHGAIDD---LDFIADMAVKHDMWMHVDGAYGGALILS---SHKSRLKGV-E--RAHSISVDFHKLFYQT-ISCGAL 336 (497)
T ss_dssp SCTTTCCBCC---HHHHHHHHHHHTCEEEEEETTGGGGGGS---TTGGGGTTG-G--GCSEEEEETTTTTCCC-SSCEEE
T ss_pred CCCCCCCCCC---HHHHHHHHHHcCCEEEEehhhhHHHHhC---cchHhhcCc-c--cCCEEEEcchhccCCC-cceEEE
Confidence 9999998655 6777889999999999999998876542 1110 1111 1 1125677899999866 799999
Q ss_pred EEEcCCchhHHHHHHHHHHHHhcccc-----------------CCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHH
Q psy14428 398 SVLTPTSDETERIMSQLKILIRGFYS-----------------NPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILI 460 (583)
Q Consensus 398 v~~~p~~~~~~~li~~l~~~~~~~~~-----------------~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 460 (583)
++ .++. .++.+......... ....+.++++...+....+++..++..+..+.+.+.+
T Consensus 337 ~~--~~~~----~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~r~~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L 410 (497)
T 2qma_A 337 LV--NDKS----NFKFLLHHADYLNREHDELPNLVDKSIATTKRFDALKVFMTMQNVGPKALGDMYDHLLAQTLEVADMI 410 (497)
T ss_dssp EE--SCGG----GGGGGCC--------------------CCSCCCTHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EE--eCHH----HHHHhcCCchhcCCccccCCCccccCCCCCCchhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99 6542 22222110000000 0124556667777776666666666555555555555
Q ss_pred hh--ccCC-CccchhhHHHHhc
Q psy14428 461 RG--FYSN-PPIHGARIVTEIL 479 (583)
Q Consensus 461 r~--~~~~-~p~~g~~i~~~~l 479 (583)
+. .+.. .+..+..+++.+.
T Consensus 411 ~~~~~~~~~~~~~~~~v~f~~~ 432 (497)
T 2qma_A 411 RTNDQFELLAEPSLSTVLFRAT 432 (497)
T ss_dssp HTCTTEEECSCCSSSEEEEEEC
T ss_pred hhCCCeEEEcCCCceEEEEEEc
Confidence 43 2321 2333445555443
|
| >4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.2e-15 Score=161.54 Aligned_cols=127 Identities=27% Similarity=0.476 Sum_probs=102.1
Q ss_pred HHHHhhcCCCeEEecCCCCcCchhhhhhcC----CCceeeeeccCCCCcc--------------------------cchh
Q psy14428 18 AFLERFYPGVKTVYFPTPTWNGHVRFCTDS----RLNVGAYRYFDNKTNG--------------------------LDFA 67 (583)
Q Consensus 18 ~~~~~~~~~~~~~~~~~p~w~n~~~~~~~~----~~~~~~y~~~~~~~~~--------------------------~d~~ 67 (583)
.+-+||- + -+..++||+++....+-.|. .|.|+.||+-++++.. .+|-
T Consensus 16 ~~~~~~~-~-v~~~p~d~i~~l~~~~~~d~~~kinLgvG~y~d~~g~~~vl~~Vk~A~~~~~~~~~~~~Y~p~~G~p~lr 93 (420)
T 4h51_A 16 TTAERWQ-K-IQAQAPDVIFDLAKRAAAAKGPKANLVIGAYRDEQGRPYPLRVVRKAEQLLLDMNLDYEYLPISGYQPFI 93 (420)
T ss_dssp CHHHHHH-T-CCCCCCCHHHHHHHHHHHCCSSCEECCSCCCBCTTSCBCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHH
T ss_pred hhhHHHh-C-CCCCCCChHHHHHHHHhcCCCCCEEeecCcccCCCCCCCCCHHHHHHHHHHhcCCCCCCCCCcCChHHHH
Confidence 3445552 2 35689999999988877664 3889999998887764 3444
Q ss_pred hhHHH---------HHhhhhhcccccchhhhHHHHHHHhCCC-CcEEEeCCCCCCChHhHhhhcCCc-ccccccccCCCC
Q psy14428 68 GMMED---------IKLAIVQGISGSGSLRVGTAFLERFYPG-VKTVYFPTPTWNGHVRFCTDSRLN-VGAYRYFDNKTN 136 (583)
Q Consensus 68 ~~~~~---------~~~a~~q~~~gtgal~~~~~~~~~~~~~-~~~~~i~~ptw~nh~~if~~~g~~-~~~y~Y~~~~~~ 136 (583)
..+.+ -+.+++||+|||||+++|++|+.+++.+ ...|||++|+|+||..+|+.+|.+ +..|+||++++.
T Consensus 94 ~aia~~~~g~~~~~~~~~~~qt~ggtga~~~a~~~l~~~~~~pgd~V~ip~P~w~~y~~i~~~aG~~~V~~~~~~~~~~~ 173 (420)
T 4h51_A 94 DEAVKIIYGNTVELENLVAVQTLSGTGAVSLGAKLLTRVFDAETTPIYLSDPTWPNHYGVVKAAGWKNICTYAYYDPKTV 173 (420)
T ss_dssp HHHHHHHHC---CGGGEEEEEEEHHHHHHHHHHHHHTTTSCTTTSCEEEEESCCTHHHHHHHHTTCCCEEEEECEEGGGT
T ss_pred HHHHHHhcCCCccccccceeeecCchHHHHHHHHHHHHhcCCCCCEEEEecCCchhHHHHHHHcCCeEEEeecccccccc
Confidence 44444 2567899999999999999999987632 368999999999999999999986 889999999999
Q ss_pred CccccCcccc
Q psy14428 137 GLDFAGMMED 146 (583)
Q Consensus 137 ~~d~~~m~~~ 146 (583)
++||++|.+.
T Consensus 174 ~~d~~~~~~~ 183 (420)
T 4h51_A 174 SLNFEGMKKD 183 (420)
T ss_dssp EECHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 9999988763
|
| >3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.1e-13 Score=142.81 Aligned_cols=172 Identities=11% Similarity=0.087 Sum_probs=125.5
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhH--HHHhhcC--CeEEEE
Q psy14428 210 KFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHV--RFCTDSR--LNVGAY 285 (583)
Q Consensus 210 ~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~--~~~~~~G--~~~~~v 285 (583)
++++.++++++ .. +.|++ |+|+++|++.+ +..+. +||+|++.+++|..+. .+++..| .+++.+
T Consensus 39 ~~~~~l~~~~~----~~---~~v~~--~~sgt~a~~~~---~~~~~-~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~~~~ 105 (379)
T 3ke3_A 39 DLLSNLKTVYN----AE---AAVII--PGSGTYGMEAV---ARQLT-IDEDCLIIRNGWFSYRWTQILEKGKFAKSSTVL 105 (379)
T ss_dssp HHHHHHHHHHT----CS---EEEEE--ESCHHHHHHHH---HHHHC-TTCEEEEEECSHHHHHHHHHHHHHCCSSEEEEE
T ss_pred HHHHHHHHHhC----CC---CEEEE--cCChhHHHHHH---HHhCC-CCCeEEEEeCCchhHHHHHHHHHhCCCCceEEE
Confidence 45666666664 22 57888 99999999985 33444 5999999999987653 3455556 477777
Q ss_pred ecccCC-------C-CCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCC
Q psy14428 286 RYFDNK-------T-NGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTS 357 (583)
Q Consensus 286 ~~~d~~-------~-~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~ 357 (583)
+. +.. . ..+|++.+++.+.. .++++++++.++||||.+++.+.+++|.++|+++|+++|+|+++. -
T Consensus 106 ~~-~~~g~~~~~~~~~~~d~~~l~~~i~~--~~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~~~-g-- 179 (379)
T 3ke3_A 106 TA-ERTEDTEAPKPFAPVDIETAVAKIKE--DKSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCIAS-G-- 179 (379)
T ss_dssp EC-EESSCCSSCCCEECCCHHHHHHHHHH--HTCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEECTTC-T--
T ss_pred ec-cccccccccCCCCCCCHHHHHHHHhh--cCCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEeccc-C--
Confidence 76 321 0 14799999988842 256778889999999999999999999999999999999999975 2
Q ss_pred CCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHH
Q psy14428 358 GDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKI 416 (583)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~ 416 (583)
.. +..+.. .+-.+++.|++|.++ .+..+|++++ + +++++++..
T Consensus 180 -~~---~~~~~~----~~~d~~~~s~~K~l~-~~~g~g~~~~--~-----~~~~~~l~~ 222 (379)
T 3ke3_A 180 -CV---WLDMKE----LGIDVLISAPQKGWS-STPCAGLVML--S-----AAAIKKVES 222 (379)
T ss_dssp -TC---CCCHHH----HTCSEEEECTTTTTC-SCCCEEEEEE--C-----HHHHHHHHT
T ss_pred -Cc---cccccc----cCCCEEEecchhhcC-CCCceEEEEE--C-----HHHHHhhhc
Confidence 21 112222 234578899999986 4456899999 6 577777764
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.8e-13 Score=149.36 Aligned_cols=243 Identities=10% Similarity=-0.058 Sum_probs=161.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHH-h----CCCCC------EEEEcCCC
Q psy14428 199 DHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLER-F----YPGVK------TVYFPTPT 267 (583)
Q Consensus 199 ~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~-~----~~~gd------~Vlv~~P~ 267 (583)
...|...++..++.+.+.+++.+..|.+ ++++++ |+|+++|+.++...++. . ..+|| .|++++++
T Consensus 137 ~~~~~~s~~~~~le~~~~~~la~l~g~~--~~~~~~--t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~ 212 (515)
T 2jis_A 137 QYTYEIAPVFVLMEEEVLRKLRALVGWS--SGDGIF--CPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKEC 212 (515)
T ss_dssp TTCTTTCHHHHHHHHHHHHHHHHHHTCS--SCEEEE--ESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTS
T ss_pred CCchhhchHHHHHHHHHHHHHHHHhCCC--CCCeEE--cCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCc
Confidence 3467767776666666555555544443 688999 99999998776433321 1 11365 89999999
Q ss_pred ChhhHHHHhhcCC---eEEEEecccCCCCCCChhhHHHHHHcC---CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHh
Q psy14428 268 WNGHVRFCTDSRL---NVGAYRYFDNKTNGLDFAGMMEDIKAM---PERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQ 341 (583)
Q Consensus 268 y~~~~~~~~~~G~---~~~~v~~~d~~~~g~d~~~l~~~l~~~---~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~ 341 (583)
|..+...++..|. +++.+|+ ++ ++.+|++.+++.+.+. ..+++++++++|+||||.+.+ +++|.++|++
T Consensus 213 h~s~~~~~~~~g~g~~~v~~v~~-~~-~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~---l~~I~~la~~ 287 (515)
T 2jis_A 213 HYSIQKGAAFLGLGTDSVRVVKA-DE-RGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDP---LEAIADVCQR 287 (515)
T ss_dssp CTHHHHHHHHTTSCGGGEEEECB-CT-TSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC---HHHHHHHHHH
T ss_pred cHHHHHHHHHcCCCCCcEEEEec-CC-CCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccC---HHHHHHHHHH
Confidence 9999999998888 8999998 54 4789999999998642 235789999999999999876 6677889999
Q ss_pred cCeEEEEeccCCCCCCCCCCCchH-HHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHH----
Q psy14428 342 RHLYPFFDMAYLGLTSGDFDKDAF-SLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKI---- 416 (583)
Q Consensus 342 ~~i~iI~De~Y~~l~~~~~~~~~~-~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~---- 416 (583)
+|+++++|++|..+..... ... .+. ...+-.+++.|++|.++.| .++|++++ .++. +++++...
T Consensus 288 ~g~~l~vD~a~~~~~~~~~--~~~~~~~---g~~~aD~v~~s~hK~l~~p-~g~G~l~~--~~~~---~~~~~~~~~~~~ 356 (515)
T 2jis_A 288 HGLWLHVDAAWGGSVLLSQ--THRHLLD---GIQRADSVAWNPHKLLAAG-LQCSALLL--QDTS---NLLKRCHGSQAS 356 (515)
T ss_dssp HTCEEEEEETTGGGGGGCT--TTGGGGT---TGGGCSEEEECTTSTTCCC-SCCEEEEE--SCCS---CHHHHHHCC---
T ss_pred cCCeEEEehhhhhHHHhCh--hhHhhcC---CCccCCEEEECcccccCCC-CCeeEEEE--eChH---HHHHHHhcCCch
Confidence 9999999999998776431 111 111 1112347788999998744 68999999 7530 24443211
Q ss_pred HH-h-cc---------------ccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHh
Q psy14428 417 LI-R-GF---------------YSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIR 461 (583)
Q Consensus 417 ~~-~-~~---------------~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r 461 (583)
.. . .. ......+.++++...+....+++..++.....+.+.+.++
T Consensus 357 yl~~~~~~~~~~~~~~~~~~~~~rr~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~ 418 (515)
T 2jis_A 357 YLFQQDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMK 418 (515)
T ss_dssp ------CCSCGGGCCGGGCSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCcccccccCCCCCCCCCCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 10 0 00 0012255666666666655566555555555544544444
|
| >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.52 E-value=9.7e-14 Score=157.46 Aligned_cols=174 Identities=14% Similarity=0.082 Sum_probs=125.8
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEE
Q psy14428 206 GGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAY 285 (583)
Q Consensus 206 ~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v 285 (583)
.-..++++.++++++. .+.+++ ++|+++++..+ +..++.+||.|+++.|+|..+...+...|++++.+
T Consensus 205 g~v~~~ee~la~l~G~-------d~~i~~--~~Gtt~a~~~~---i~al~~~GD~Vlv~~~~h~s~~~~~~~~G~~~v~v 272 (755)
T 2vyc_A 205 GAFGESEKYAARVFGA-------DRSWSV--VVGTSGSNRTI---MQACMTDNDVVVVDRNCHKSIEQGLMLTGAKPVYM 272 (755)
T ss_dssp HHHHHHHHHHHHHHTC-------SEEEEE--SSHHHHHHHHH---HHHHCCTTCEEEEESSCCHHHHHHHHHHCCEEEEE
T ss_pred cHHHHHHHHHHHHhCC-------CceEEE--CCcHHHHHHHH---HHHhcCCCCEEEECCCchHHHHHHHHHcCCEEEEE
Confidence 3357788888888763 145777 99999999884 45567779999999999999988899999999999
Q ss_pred ecccCCCCC----C-----ChhhHHHHHHcCC-------CCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEe
Q psy14428 286 RYFDNKTNG----L-----DFAGMMEDIKAMP-------ERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFD 349 (583)
Q Consensus 286 ~~~d~~~~g----~-----d~~~l~~~l~~~~-------~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~D 349 (583)
+. +.++++ + |++.+++++++.. .++++++++|| ||||.+.+ +++|+++|++++++|++|
T Consensus 273 ~~-~~~~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~d---l~~I~~ia~~~~~~livD 347 (755)
T 2vyc_A 273 VP-SRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYN---AKEAQDLLEKTSDRLHFD 347 (755)
T ss_dssp CC-CBCTTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEEC---HHHHHHHHTTTCSEEEEE
T ss_pred eC-CCCccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecC---HHHHHHHHHHcCCEEEEE
Confidence 87 433334 4 9999999986421 12347888898 79999976 667789999999999999
Q ss_pred ccCCCC-CCCCCCCchHHHHHH--HH-hcCcEEEEecCcccccccCccc-eEEEE
Q psy14428 350 MAYLGL-TSGDFDKDAFSLRYF--AK-EVGQLCLAQSFSKNMGLYGERV-GTFSV 399 (583)
Q Consensus 350 e~Y~~l-~~~~~~~~~~~~~~~--~~-~~~~vi~i~S~SK~~~l~GlRi-G~lv~ 399 (583)
|+|... .+++...+..++ .. .+ ..+++|++.|+||++ +|++. |++++
T Consensus 348 eA~~~~~~~~~~~~~~~~~-~g~~aD~~~~~~iv~~S~hK~L--~g~~~g~~i~~ 399 (755)
T 2vyc_A 348 EAWYGYARFNPIYADHYAM-RGEPGDHNGPTVFATHSTHKLL--NALSQASYIHV 399 (755)
T ss_dssp CTTCTTGGGCGGGTTSSSS-CSCCCCCSSBEEEEEEETTTSS--SCCTTCEEEEE
T ss_pred CcCchhcccCcccCCcchh-cCCcCCccCCCeEEEECccccc--cCcCCeeeeee
Confidence 999753 232100001111 11 12 235788999999975 68885 45555
|
| >2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A | Back alignment and structure |
|---|
Probab=99.52 E-value=2.8e-13 Score=145.96 Aligned_cols=206 Identities=16% Similarity=0.148 Sum_probs=116.1
Q ss_pred CccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCC---CCC---HHHHHHHHHHHhCCCCCCCCCCCe-EEEe
Q psy14428 164 KKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANI---GGD---AKFCKLAAQLAYGEDFPAFKDNRL-AIVQ 236 (583)
Q Consensus 164 ~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~---~G~---~~Lr~aia~~~~~~~g~~~~~~~I-~i~~ 236 (583)
+.+.|..++. ++++.|.+++...+.+....+|+.. .|. .+|++...+++.+.+|.+ .+.+ ..|+
T Consensus 55 ~~i~lias~n-------~~~~~V~eA~~~~l~~~y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~l~g~~--~~~~~~~v~ 125 (490)
T 2a7v_A 55 RGLELIASEN-------FCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLD--PAQWGVNVQ 125 (490)
T ss_dssp HSEECCTTCC-------CCCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCC--TTTEEEECC
T ss_pred cCceEECCCC-------CCCHHHHHHHHHHHcCCCccCCCcccccCccHHHHHHHHHHHHHHHHHcCCC--cccCceEEe
Confidence 4566654332 1568899988776654322344321 232 366633334443333332 3322 1222
Q ss_pred cCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHH--------HHhhcCC--eEEEEecccCCCCCCChhhHHHHHHc
Q psy14428 237 GISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVR--------FCTDSRL--NVGAYRYFDNKTNGLDFAGMMEDIKA 306 (583)
Q Consensus 237 t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~--------~~~~~G~--~~~~v~~~d~~~~g~d~~~l~~~l~~ 306 (583)
+++|++|+..+ +..++.|||+|++++|.|..+.. .+...|. +++.+++ |++++.+|++.+++.+..
T Consensus 126 ~~sGt~An~~a---l~al~~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~v-d~~~~~iD~d~le~~l~~ 201 (490)
T 2a7v_A 126 PYSGSPANLAV---YTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKL-NPKTGLIDYNQLALTARL 201 (490)
T ss_dssp CSSHHHHHHHH---HHHHCCSCEECCC-------------------------------CCB-CTTTCSBCHHHHHHHHHH
T ss_pred CCchHHHHHHH---HHHHcCCCCEecccCccccccccchhhhcchhHHHcCCeEEEEeccc-ccccCCcCHHHHHHHHhh
Confidence 55678888874 45567789999999998865421 2234454 3445555 555678999999998853
Q ss_pred CCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCC-CCCCCCCCCchHHHHHHHHhcCcEEEEecCcc
Q psy14428 307 MPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYL-GLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSK 385 (583)
Q Consensus 307 ~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~-~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK 385 (583)
.+++++++++++||+. . ++++|.++|+++|+++++|+++. ++...+. .+.++ + .--+++.|+||
T Consensus 202 --~~~klIi~~~s~~~~~--~---dl~~i~~ia~~~g~~livD~Ah~~glv~~g~--~~~~~----~--~aDiv~~S~hK 266 (490)
T 2a7v_A 202 --FRPRLIIAGTSAYARL--I---DYARMREVCDEVKAHLLADMAHISGLVAAKV--IPSPF----K--HADIVTTTTHK 266 (490)
T ss_dssp --HCCSEEEECCSSCCSC--C---CHHHHHHHHHHTTCEEEEECGGGHHHHHTTS--SCCGG----G--TCSEEEEESSG
T ss_pred --cCCcEEEEcCCCCCCc--c---cHHHHHHHHHHcCCEEEEccccccccccCCc--CCCCC----C--CCCEEEECCcc
Confidence 2457888899999963 3 36788999999999999999953 4433331 11122 1 12378899999
Q ss_pred cccccCccceEEEE
Q psy14428 386 NMGLYGERVGTFSV 399 (583)
Q Consensus 386 ~~~l~GlRiG~lv~ 399 (583)
++ .|.|.|++++
T Consensus 267 ~l--~Gp~GG~i~~ 278 (490)
T 2a7v_A 267 TL--RGARSGLIFY 278 (490)
T ss_dssp GG--CSCSCEEEEE
T ss_pred cC--ccccchheee
Confidence 87 5789999999
|
| >1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.3e-13 Score=147.26 Aligned_cols=153 Identities=10% Similarity=-0.022 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHH----hhcCCeEEE
Q psy14428 209 AKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFC----TDSRLNVGA 284 (583)
Q Consensus 209 ~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~----~~~G~~~~~ 284 (583)
.++++.++++++ . ++++|++ ++|++.+.+.+...+ .+ .+||+|++++|+|+.+...+ +..|++++.
T Consensus 111 ~~~~~~la~~~g----~--~~~~i~~--~~g~taa~ea~~~a~-~~-~~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v~~ 180 (438)
T 1wyu_A 111 FEYQTMIAELAG----L--EIANASM--YDGATALAEGVLLAL-RE-TGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLT 180 (438)
T ss_dssp HHHHHHHHHHHT----S--SEECSCB--SSHHHHHHHHHHHHH-HH-HTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHhC----C--CccceEE--eCcHHHHHHHHHHHH-hc-CCCCEEEEcCccCHhHHHHHHHHHHHCCCEEEE
Confidence 455666666653 3 4678889 999995444432222 22 45999999999999998665 447999999
Q ss_pred EecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEec---cCCCCCCCCCC
Q psy14428 285 YRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDM---AYLGLTSGDFD 361 (583)
Q Consensus 285 v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De---~Y~~l~~~~~~ 361 (583)
++. +. +.+|++. + .++++++++++| ||||.+.+ +++|+++|+++|+++|+|- +|..+.
T Consensus 181 v~~-~~--~~~d~~~----i---~~~t~~v~i~~p-n~tG~~~~---l~~i~~la~~~g~~vivd~d~~a~g~~~----- 241 (438)
T 1wyu_A 181 LPL-EG--GRTPLPE----V---GEEVGAVVVQNP-NFLGALED---LGPFAEAAHGAGALFVAVADPLSLGVLK----- 241 (438)
T ss_dssp ECC-BT--TBCCCCC----C---CTTEEEEEEESS-CTTSBCCC---HHHHHHHHHHTTCEEEEECCTTGGGTBC-----
T ss_pred EcC-cC--CccCHHH----h---CCCeEEEEEECC-CCCeEEec---HHHHHHHHHHcCCEEEEEechhhccCcC-----
Confidence 987 32 4567665 3 567899999999 99999985 6777888999999999662 233221
Q ss_pred CchHHHHHHHHhcCcEEEEecCcccc----cccCccceEEEE
Q psy14428 362 KDAFSLRYFAKEVGQLCLAQSFSKNM----GLYGERVGTFSV 399 (583)
Q Consensus 362 ~~~~~~~~~~~~~~~vi~i~S~SK~~----~l~GlRiG~lv~ 399 (583)
. + .. ....+ ++.| ||.| ++.|.|+||+++
T Consensus 242 --~-~-~~---~g~D~-~~~s-~kk~~~~~~~~Gp~~G~l~~ 274 (438)
T 1wyu_A 242 --P-P-GA---YGADI-AVGD-GQSLGLPMGFGGPHFGFLAT 274 (438)
T ss_dssp --C-H-HH---HTCSE-EEEE-CTTTTCCCGGGCSCCEEEEE
T ss_pred --C-C-cc---CCCCE-EEEC-CcccCCCccCCCCCeeEEEE
Confidence 1 1 11 12234 4444 5654 466789999999
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-13 Score=149.00 Aligned_cols=251 Identities=12% Similarity=0.016 Sum_probs=155.6
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhcc---CCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEec
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEK---NLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQG 237 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~---~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t 237 (583)
.+...+|+..|.+....|. ..+.+.+++.+.... .....|.. ....+|++++++.+.+..+ ...++|++ +
T Consensus 61 dG~~ylD~~~g~~~~~lGh--~~p~v~~A~~~~~~~~~~~~~~~~~~-~~~~~l~~~la~~l~~~~~--~~~~~v~f--~ 133 (472)
T 1ohv_A 61 DGNRMLDLYSQISSIPIGY--SHPALVKLVQQPQNVSTFINRPALGI-LPPENFVEKLRESLLSVAP--KGMSQLIT--M 133 (472)
T ss_dssp TSCEEEESSHHHHTCSSCB--TCHHHHHHHHCGGGHHHHHCCCCTTT-SCBTTHHHHHHHTGGGGCC--TTCCEEEE--E
T ss_pred CCCEEEECCCCHhhcccCC--CCHHHHHHHHHHHhhccccccccccc-ccHHHHHHHHHHHHHHhCC--CCcCEEEE--e
Confidence 4557899998888655564 357788877665422 11112332 3457899999997765432 35679999 9
Q ss_pred CCchhHHHHHHHHHHHh-----C-----------------CCC---CEEEEcCCCChhhHHHHh-hcCCe----------
Q psy14428 238 ISGSGSLRVGTAFLERF-----Y-----------------PGV---KTVYFPTPTWNGHVRFCT-DSRLN---------- 281 (583)
Q Consensus 238 ~G~~~al~l~~~~l~~~-----~-----------------~~g---d~Vlv~~P~y~~~~~~~~-~~G~~---------- 281 (583)
+||++|++.+..++... . .+| +.|++.+++|..+..... ..|..
T Consensus 134 ~sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~~~~~~~~~~~~ 213 (472)
T 1ohv_A 134 ACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSF 213 (472)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHHCCSCHHHHTTSCCC
T ss_pred CCchhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCcccccHHHHhcCCCccccccCCCCC
Confidence 99999999976554321 0 135 899999999988655442 22321
Q ss_pred ---EEEEeccc-C--CC--C-----CCChhhHHHHHHcCC---CCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCe
Q psy14428 282 ---VGAYRYFD-N--KT--N-----GLDFAGMMEDIKAMP---ERSILFLQTSSHNPTGV-DLSEDQWRQLAVVVKQRHL 344 (583)
Q Consensus 282 ---~~~v~~~d-~--~~--~-----g~d~~~l~~~l~~~~---~~~~~i~i~~p~NPTG~-~~s~~~~~~l~~~a~~~~i 344 (583)
.+++|... + .. + ..|++.+++.+.... .+++++++...+|+||. ..+++.+++|.++|+++|+
T Consensus 214 ~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~ 293 (472)
T 1ohv_A 214 DWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGC 293 (472)
T ss_dssp CCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTC
T ss_pred CCcccCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCC
Confidence 11222100 0 00 0 114677777775321 16778877767888996 5789999999999999999
Q ss_pred EEEEeccCCCCCCCCCCCchHHHHHHHHhcCcE--EEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccc
Q psy14428 345 YPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQL--CLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFY 422 (583)
Q Consensus 345 ~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~v--i~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~ 422 (583)
++|+||+|.+|...+ ....... .+.. +-+.||||.+ +.| ||++ + +++. .+........
T Consensus 294 lli~DEv~~g~g~~g---~~~~~~~----~gv~~~~Di~t~sK~~-l~G---G~~~---~-----~~~~-~~~~~~~~~T 353 (472)
T 1ohv_A 294 AFLVDEVQTGGGSTG---KFWAHEH----WGLDDPADVMTFSKKM-MTG---GFFH---K-----EEFR-PNAPYRIFNT 353 (472)
T ss_dssp EEEEECTTTTTTTTS---SSSGGGG----GCCSSCCSEEEECGGG-SSE---EEEE---C-----GGGS-CSSSSSSCCS
T ss_pred EEEEeCcccCCCCCC---Cchhccc----cCCCCCCCEEEEcccc-ccC---CccC---c-----hhhc-ccccccccCc
Confidence 999999999877654 1111111 1111 3355899995 345 6664 3 1332 1222222334
Q ss_pred cCCChHHHHHHHHHhC
Q psy14428 423 SNPPIHGARIVTEILS 438 (583)
Q Consensus 423 ~~~s~~~q~~~~~~l~ 438 (583)
++.++++|.++...++
T Consensus 354 ~~~~~~~~aaa~aal~ 369 (472)
T 1ohv_A 354 WLGDPSKNLLLAEVIN 369 (472)
T ss_dssp SSSCHHHHHHHHHHHH
T ss_pred cCccHHHHHHHHHHHH
Confidence 5678888888776664
|
| >1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=2e-13 Score=153.68 Aligned_cols=176 Identities=13% Similarity=0.016 Sum_probs=124.6
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHH-HhhcCCeE
Q psy14428 204 NIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRF-CTDSRLNV 282 (583)
Q Consensus 204 ~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~-~~~~G~~~ 282 (583)
+..-..++++.+|++++.. ..+++ ++|+++++..+ +..++.+||.|+++.|+|..+... ++..|+++
T Consensus 171 ~~~~i~e~e~~lA~~~gae-------~~i~v--~nGtt~an~~a---i~al~~pGD~VLv~~~~H~S~~~~~~~l~Ga~~ 238 (730)
T 1c4k_A 171 HEGPAVAAEKHAARVYNAD-------KTYFV--LGGSSNANNTV---TSALVSNGDLVLFDRNNHKSVYNSALAMAGGRP 238 (730)
T ss_dssp TBTHHHHHHHHHHHHTTCS-------EEEEE--SSHHHHHHHHH---HHHHCCTTCEEEEETTCCHHHHHHHTTTTCCEE
T ss_pred ChHHHHHHHHHHHHHHCCC-------cEEEE--CCHHHHHHHHH---HHHhcCCCCEEEEcCCchHHHHHHHHHHCCCEE
Confidence 3334689999999988632 34777 99999999884 455677799999999999988877 88899999
Q ss_pred EEEecccCCCCC----CChhhH-----HHHHHcC------CCCc-EEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEE
Q psy14428 283 GAYRYFDNKTNG----LDFAGM-----MEDIKAM------PERS-ILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYP 346 (583)
Q Consensus 283 ~~v~~~d~~~~g----~d~~~l-----~~~l~~~------~~~~-~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~i 346 (583)
+.++. +.++++ +|++.+ ++++... ..+. +++++++| ||||.+.+ +++|+++|++++++|
T Consensus 239 v~v~~-~~~~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~d---l~~I~~la~~~g~~l 313 (730)
T 1c4k_A 239 VYLQT-NRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYN---AHEVVKRIGHLCDYI 313 (730)
T ss_dssp EEECE-EECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEEC---HHHHHHHHGGGBSEE
T ss_pred EEEeC-CccccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecC---HHHHHHHHHHcCCeE
Confidence 98877 333344 688888 7777432 1111 78888898 69999976 667889999999999
Q ss_pred EEeccCCCC-CCCCCCCchHHHHH--HHHhcCcEEEEecCcccccccCccceEEE
Q psy14428 347 FFDMAYLGL-TSGDFDKDAFSLRY--FAKEVGQLCLAQSFSKNMGLYGERVGTFS 398 (583)
Q Consensus 347 I~De~Y~~l-~~~~~~~~~~~~~~--~~~~~~~vi~i~S~SK~~~l~GlRiG~lv 398 (583)
++||+|... .+.+......++.. +.....+++++.|+||++ +|++.|.++
T Consensus 314 ivDeAh~~~~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L--~g~~~gg~I 366 (730)
T 1c4k_A 314 EFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQ--AGFSQTSQI 366 (730)
T ss_dssp EEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHS--SCCTTCEEE
T ss_pred EEEcccccccccCcccCCcCcccccccCCCCCCEEEEECCCCCC--CCCCCEEEE
Confidence 999999742 34320000011100 001134789999999975 688876555
|
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.4e-13 Score=145.83 Aligned_cols=277 Identities=10% Similarity=-0.052 Sum_probs=181.0
Q ss_pred ChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCC--------CCeEEEecCCchhHHHHHHHHHHHh
Q psy14428 183 LPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKD--------NRLAIVQGISGSGSLRVGTAFLERF 254 (583)
Q Consensus 183 ~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~--------~~I~i~~t~G~~~al~l~~~~l~~~ 254 (583)
+..+.+.+......+ ...|....+..+|++.+++|+.+..|.+... ...++ |+||++|+.++....+..
T Consensus 92 ~~~~~~~~~~~~n~~-~~~~~~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~--~~ggt~an~~al~~ar~~ 168 (481)
T 4e1o_A 92 PSLLGDMLADAINCL-GFTWASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVL--QSTVSESTLIALLAARKN 168 (481)
T ss_dssp HHHHHHHHHHHHCCC-CSSTTTCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEE--ESCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcc-cCCcCCCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEE--eCchHHHHHHHHHHHHHH
Confidence 345666666666443 5678888899999999999998877765332 36778 999999987763332211
Q ss_pred --------C--------CCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcC---CCCcEEEE
Q psy14428 255 --------Y--------PGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAM---PERSILFL 315 (583)
Q Consensus 255 --------~--------~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~---~~~~~~i~ 315 (583)
. .+++.|+++++++..+...++..|++++.+|. | +++.+|++.+++++++. ...+++++
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~g~~~~~v~~-~-~~~~~d~~~Le~~i~~~~~~g~~~~~vv 246 (481)
T 4e1o_A 169 KILEMKTSEPDADESSLNARLVAYASDQAHSSVEKAGLISLVKMKFLPV-D-DNFSLRGEALQKAIEEDKQRGLVPVFVC 246 (481)
T ss_dssp HHHHHHHHCTTSCHHHHHTTEEEEEETTSCHHHHHHHHHHTCEEEEECC-C-TTSCCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHhhhcCcccccccccCCeEEEEcCcchHHHHHHHHhCCCceEEEEc-C-CCCcCCHHHHHHHHHHHHhCCCCcEEEE
Confidence 0 14789999999999999999999999999998 5 35789999999998643 12367788
Q ss_pred eCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccce
Q psy14428 316 QTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVG 395 (583)
Q Consensus 316 i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG 395 (583)
.+.++|+||.+ +.+++|+++|++||+++++|.+|........ .......-.+. -. .+..+++|.++.| .-+|
T Consensus 247 ~~~~~t~~G~i---d~l~~I~~la~~~~~~lhvDaA~g~~~~~~~--~~~~~~~gi~~-aD-si~~~~hK~l~~p-~g~g 318 (481)
T 4e1o_A 247 ATLGTTGVCAF---DCLSELGPICAREGLWLHIDAAYAGTAFLCP--EFRGFLKGIEY-AD-SFTFNPSKWMMVH-FDCT 318 (481)
T ss_dssp EEBSCTTTCCB---CCHHHHHHHHHHHTCEEEEECTTGGGGGGSG--GGGGGGTTGGG-CS-EEEECHHHHSSCC-SSCE
T ss_pred EecCCCCCcCc---CCHHHHHHHHHHcCCeEEeehhhHHHHHhCh--hhHHHhcCccc-CC-EEEEChHHhcCCC-CceE
Confidence 89999999977 4577889999999999999999987643220 11111000111 12 3556899999865 5678
Q ss_pred EEEEEcCCchhHHHHHH-HHHHHHhcc------------------ccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHH
Q psy14428 396 TFSVLTPTSDETERIMS-QLKILIRGF------------------YSNPPIHGARIVTEILSDPKLKAQCDETERIMSQL 456 (583)
Q Consensus 396 ~lv~~~p~~~~~~~li~-~l~~~~~~~------------------~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l 456 (583)
++++ .++ .++. .+....... ......+.++++...+....+++.+++..+..+.+
T Consensus 319 ~l~~--~~~----~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~r~~~~l~~~~al~~~g~~g~~~~~~~~~~~a~~l 392 (481)
T 4e1o_A 319 GFWV--KDK----YKLQQTFSVNPIYLRHANSGVATDFMHWQIPLSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYF 392 (481)
T ss_dssp EEEE--SBH----HHHHTTTCCCCGGGCCTTTTTSCCGGGGSSSSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEE--eCH----HHHHHHhcCCchhccCcccCCCCCcccccccCCCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 8888 542 3332 221100000 00124566777777776666666666655555555
Q ss_pred HHHHhh--ccCC-CccchhhHHHHh
Q psy14428 457 KILIRG--FYSN-PPIHGARIVTEI 478 (583)
Q Consensus 457 ~~~~r~--~~~~-~p~~g~~i~~~~ 478 (583)
.+.++. .+.. .|...+.+++.+
T Consensus 393 ~~~L~~~~g~~~~~~~~~~~v~f~~ 417 (481)
T 4e1o_A 393 ESLVRNDPSFEIPAKRHLGLVVFRL 417 (481)
T ss_dssp HHHHHTCTTEECCSCCCSSEEEEEE
T ss_pred HHHHhcCCCeEEecCCceeEEEEEe
Confidence 555443 3332 333444444444
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6 | Back alignment and structure |
|---|
Probab=99.41 E-value=1.4e-12 Score=140.67 Aligned_cols=259 Identities=10% Similarity=-0.090 Sum_probs=168.8
Q ss_pred hHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCC-------CCeEEEecCCchhHHHHHHHHHHHh--
Q psy14428 184 PSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKD-------NRLAIVQGISGSGSLRVGTAFLERF-- 254 (583)
Q Consensus 184 ~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~-------~~I~i~~t~G~~~al~l~~~~l~~~-- 254 (583)
..+.+.+......+ ...|....+..+|++.+++|+.+..|.+... ...++ |+||++|..++....+..
T Consensus 88 ~~~~~~l~~~~n~~-~~~~~~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~--t~ggt~anl~al~~ar~~~~ 164 (475)
T 3k40_A 88 AIVADMLSGAIACI-GFTWIASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVI--QGTASESTLVALLGAKAKKL 164 (475)
T ss_dssp HHHHHHHHHHHCCC-SSSCCCCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEE--ESCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcc-ccCccCCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEE--cCchHHHHHHHHHHHHHHHH
Confidence 45555666555432 5668888899999999999998887765332 36788 999999977653332211
Q ss_pred ------C--------CCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcC---CCCcEEEEeC
Q psy14428 255 ------Y--------PGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAM---PERSILFLQT 317 (583)
Q Consensus 255 ------~--------~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~---~~~~~~i~i~ 317 (583)
. .+++.|+++++++..+...++..|++++.+|+ |+ ++ +|++.+++.|... ...+++++.+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~vi~s~~~H~s~~~~~~~~g~~~~~v~~-d~-~~-~d~~~L~~~i~~~~~~~~~~~~v~~~ 241 (475)
T 3k40_A 165 KEVKELHPEWDEHTILGKLVGYCSDQAHSSVERAGLLGGVKLRSVQS-EN-HR-MRGAALEKAIEQDVAEGLIPFYAVVT 241 (475)
T ss_dssp HHHHHHCTTSCHHHHHHHEEEEEETTSCHHHHHHHHHHTCEEEEECC-BT-TB-CCHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred HHhhccCcccccccccCCeEEEECCCchHHHHHHHHHcCCceEEEEC-CC-CC-cCHHHHHHHHHHHHHCCCccEEEEEE
Confidence 0 12578999999999999999999999999999 54 35 9999999998643 2236778889
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEE
Q psy14428 318 SSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTF 397 (583)
Q Consensus 318 ~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~l 397 (583)
.++|+||.+- .+++|+++|+++|+++++|++|........ ....... ....--.+..|++|.++ ....+|++
T Consensus 242 ~~~t~~G~~~---~l~~I~~la~~~~~~lhvD~A~~~~~~~~~--~~~~~~~--gi~~~Ds~~~~~hK~l~-~p~g~g~l 313 (475)
T 3k40_A 242 LGTTNSCAFD---YLDECGPVGNKHNLWIHVDAAYAGSAFICP--EYRHLMK--GIESADSFNFNPHKWML-VNFDCSAM 313 (475)
T ss_dssp BSCTTTCCBC---CHHHHHHHHHHTTCEEEEECTTGGGGGGSG--GGGGGGT--TGGGCSEEEECHHHHSS-CCSSCEEE
T ss_pred ecCCCCcCcC---CHHHHHHHHHHhCCeEEEeHHhHHHHHhCH--hhHHHhc--CcccCCEEEECchhccC-CCCceEEE
Confidence 9999999874 577789999999999999999987543210 1111100 00011356688999887 44678999
Q ss_pred EEEcCCchhHHHHHHHHHHHHhcc------------------ccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHH
Q psy14428 398 SVLTPTSDETERIMSQLKILIRGF------------------YSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKIL 459 (583)
Q Consensus 398 v~~~p~~~~~~~li~~l~~~~~~~------------------~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~ 459 (583)
++ .++. .+.+.+....... ......+.++++...+....+++..++..+..+.+.+.
T Consensus 314 ~~--~~~~---~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~sr~~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~ 388 (475)
T 3k40_A 314 WL--KDPS---WVVNAFNVDPLYLKHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDL 388 (475)
T ss_dssp EE--SSGG---GC---------------------------CCCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EE--eCHH---HHHHHhcCCccccCCCcCCCCCCcccccccCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 88 6543 1222221110000 00013456677777766556666665555555555444
Q ss_pred Hh
Q psy14428 460 IR 461 (583)
Q Consensus 460 ~r 461 (583)
++
T Consensus 389 L~ 390 (475)
T 3k40_A 389 CV 390 (475)
T ss_dssp HH
T ss_pred Hh
Confidence 44
|
| >3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=3e-12 Score=143.01 Aligned_cols=172 Identities=14% Similarity=0.079 Sum_probs=121.9
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEE
Q psy14428 204 NIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVG 283 (583)
Q Consensus 204 ~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~ 283 (583)
|..-..++++.+|++++.. ..+++ ++|++.|+..+ +..++.+||.|+++.|+|..+...+...|++++
T Consensus 193 ~~g~i~eaE~~lA~~fGa~-------~a~~v--~nGts~An~~a---i~al~~pGD~VLv~r~~H~S~~~~l~lsGa~pv 260 (715)
T 3n75_A 193 HSGPHKEAEQYIARVFNAD-------RSYMV--TNGTSTANKIV---GMYSAPAGSTILIDRNCHKSLTHLMMMSDVTPI 260 (715)
T ss_dssp TBTHHHHHHHHHHHHHTCS-------EEEEE--SSHHHHHHHHH---HHHHCCTTCEEEEESSCCHHHHHHHHHSCCEEE
T ss_pred CcHHHHHHHHHHHHHhCCC-------CceEE--CcHHHHHHHHH---HHHhCCCCCEEEECCCccHHHHHHHHHcCCEEE
Confidence 3334689999999999753 34667 89988888763 555677899999999999999999999999999
Q ss_pred EEecccCCCCCC---------ChhhHHHHHHcCC--CCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccC
Q psy14428 284 AYRYFDNKTNGL---------DFAGMMEDIKAMP--ERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAY 352 (583)
Q Consensus 284 ~v~~~d~~~~g~---------d~~~l~~~l~~~~--~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y 352 (583)
.++. +.+++++ |++.+++++++.+ +.++++++++| ||+|.+++.+++ +++|+++ .|++||+|
T Consensus 261 ~v~~-~~~~~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p-n~~G~v~dl~~I---~ela~~~--~livDEAH 333 (715)
T 3n75_A 261 YFRP-TRNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYNTDFI---KKTLDVK--SIHFDSAW 333 (715)
T ss_dssp EECC-CBCTTCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS-CTTSEEECHHHH---HHHCCCS--EEEEECTT
T ss_pred EEec-cccccccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC-CCCCccCCHHHH---HHHhCcC--cEEEcccc
Confidence 9987 3334554 8999999997542 12347888999 999999986655 5556555 37899999
Q ss_pred CCCC-CCCCCCchHHHHHHHH--hcCc-EEEEecCcccccccCcc-ceEEEE
Q psy14428 353 LGLT-SGDFDKDAFSLRYFAK--EVGQ-LCLAQSFSKNMGLYGER-VGTFSV 399 (583)
Q Consensus 353 ~~l~-~~~~~~~~~~~~~~~~--~~~~-vi~i~S~SK~~~l~GlR-iG~lv~ 399 (583)
.... +.+ ..+....+.. ..+. ++++.|++|++ +|+. .|++++
T Consensus 334 ~~~~~f~~---~~~~~~al~~g~~aD~vii~~~S~hKtL--~gltqgs~i~v 380 (715)
T 3n75_A 334 VPYTNFSP---IYEGKCGMSGGRVEGKVIYETQSTHKLL--AAFSQASMIHV 380 (715)
T ss_dssp CTTGGGSG---GGTTSSTTSSSCCTTCEEEEEECHHHHS--SCCTTCEEEEE
T ss_pred ccccccCC---ccccccccccCcCCCEEEEEEecccccc--cCCCCeeEEEe
Confidence 8653 332 0100111100 0134 37799999996 5763 577777
|
| >4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=9.8e-08 Score=101.52 Aligned_cols=262 Identities=13% Similarity=0.075 Sum_probs=162.2
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
.+...||+..|.+....|. -.|.|.+++.+.++..... ..+..-..+|.+.+++.+. ..+.+.+ +++|
T Consensus 85 dG~~ylD~~~g~~~~~lGH--~hp~v~~Av~~q~~~~~~~-~~~~~~~~~lae~l~~~~p-------~~~~v~f--~~SG 152 (454)
T 4ao9_A 85 DGHRYADFIAEYTAGVYGH--SAPEIRDAVIEAMQGGINL-TGHNLLEGRLARLICERFP-------QIEQLRF--TNSG 152 (454)
T ss_dssp TCCEEEESSGGGGTTTTCS--CCHHHHHHHHHHHHTCSCC-CSEESSHHHHHHHHHHHST-------TCSEEEE--ESSH
T ss_pred CCCEEEEccccHHhhcccC--CCHHHHHHHHHHHhcCCCc-cCCcHHHHHHHHHHHHhCC-------CCCEEEE--eCch
Confidence 4567889988887766665 3477888877776553222 1223334567777776653 2478999 9999
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhc------CCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEE
Q psy14428 241 SGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDS------RLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILF 314 (583)
Q Consensus 241 ~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~------G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i 314 (583)
++|.+.+..+.+.... .++|+..+-+|......+... ......+|. + |.+.+++.+++..+...++
T Consensus 153 sEA~e~AiklAr~~tg-r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~p~----n---d~~~l~~~l~~~~~~iAav 224 (454)
T 4ao9_A 153 TEANLMALTAALHFTG-RRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVLPY----N---DAQTARAQIERHGPEIAVV 224 (454)
T ss_dssp HHHHHHHHHHHHHHHT-CCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEECT----T---CHHHHHHHHHHTGGGEEEE
T ss_pred HHHHHHHHHHHHhccc-CCeEEEEeCCcCCccccccccccCccCCCCcccCCC----c---hHHHHHHHHhhcCCceEEE
Confidence 9999987666665544 578888888887643211111 112333333 1 7888988887765556666
Q ss_pred EeCCCCCCCCCC-CCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCcc
Q psy14428 315 LQTSSHNPTGVD-LSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGER 393 (583)
Q Consensus 315 ~i~~p~NPTG~~-~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlR 393 (583)
++-.-+.-.|.+ .+++-+++|.++|++||+++|.||+... ..+. ......+ +-.+.++ +++|.+| .|+-
T Consensus 225 IvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~tG-R~G~----~~a~e~~-gv~PDi~---t~gK~lg-gG~P 294 (454)
T 4ao9_A 225 LVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMTS-RLAP----HGLANKL-GIRSDLT---TLGKYIG-GGMS 294 (454)
T ss_dssp EECSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTGG-GGST----TCHHHHH-TCCCSEE---EEEGGGG-TTSS
T ss_pred EeccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCcC-CCcc----ccchhcc-CCCCcEE---EeccccC-CCCc
Confidence 654345556654 4678899999999999999999999864 2221 1112222 2223343 6789998 8999
Q ss_pred ceEEEEEcCCchhHHHHHHHHHHHH----hccccCCChHHHHHHHHH---hCChhhhhhhhhHH-HHHHHHHHH
Q psy14428 394 VGTFSVLTPTSDETERIMSQLKILI----RGFYSNPPIHGARIVTEI---LSDPKLKAQCDETE-RIMSQLKIL 459 (583)
Q Consensus 394 iG~lv~~~p~~~~~~~li~~l~~~~----~~~~~~~s~~~q~~~~~~---l~~~~~~~~~~~~~-~~~~~l~~~ 459 (583)
+|.+++ . +++++.+.... ...+++.++++..++.+. ++++.+.+++.++- .+.+.++.+
T Consensus 295 iga~~~--~-----~ei~~~~~~~~~~~~h~~T~~gnPla~AAala~L~~l~~~~~~~~~~~~g~~l~~~L~~l 361 (454)
T 4ao9_A 295 FGAFGG--R-----ADVMALFDPRTGPLAHSGTFNNNVMTMAAGYAGLTKLFTPEAAGALAERGEALRARLNAL 361 (454)
T ss_dssp CEEEEE--C-----HHHHGGGCTTTCSCCCCCTTTTCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeeee--H-----HHHHHHHhhccCCccccCCCCCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHH
Confidence 999999 6 57877765321 112345566666655544 45655544444432 333444444
|
| >3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.87 E-value=2.6e-08 Score=104.06 Aligned_cols=222 Identities=14% Similarity=0.080 Sum_probs=135.6
Q ss_pred HHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhC---CCCCEEEEcCCCChhhHHHHhhcCCeEEEEec-ccCC
Q psy14428 216 AQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFY---PGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRY-FDNK 291 (583)
Q Consensus 216 a~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~---~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~-~d~~ 291 (583)
.+|++.. |++. ....++ ++|+++++..+ ++..+. +.+|.|+++.-+.......+...|++++.++. .+++
T Consensus 123 ld~L~~~-G~~~-~~~~fl--VnGsTgg~lam--ilaa~r~~rpg~d~VIvpRn~HKSv~kAliL~Gl~Pv~V~p~~d~~ 196 (501)
T 3hl2_A 123 LDIIKLA-GVHT-VANCFV--VPMATGMSLTL--CFLTLRHKRPKAKYIIWPRIDQKSCFKSMITAGFEPVVIENVLEGD 196 (501)
T ss_dssp HHHHHHT-TCTT-CCEEEE--ESSCHHHHHHH--HHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECEEEETT
T ss_pred HHHHHHc-CCCC-CCcEEE--ECcHHHHHHHH--HHHHcCcccCCCCEEEEecchHHHHHHHHHHcCCeEEEEeeeeccc
Confidence 3444443 6552 234666 89999666553 344433 23599999999999899999999999998865 2334
Q ss_pred CCCCChhhHHHHHHcCCCCcEEEEeC-CCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHH
Q psy14428 292 TNGLDFAGMMEDIKAMPERSILFLQT-SSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYF 370 (583)
Q Consensus 292 ~~g~d~~~l~~~l~~~~~~~~~i~i~-~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~ 370 (583)
..++|++.++++|++.....+++++. ++.|-.+.+ +.+++|+++|.+||+++++|++|+...... ...+ .+.
T Consensus 197 ~~~id~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~---ddI~eIaeIch~~gIpllVDeAhGah~~~~---~~lp-~sA 269 (501)
T 3hl2_A 197 ELRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVP---DRLEELAVICANYDIPHIVNNAYGVQSSKC---MHLI-QQG 269 (501)
T ss_dssp EEEECHHHHHHHHHHHCGGGEEEEEEECSCCTTBCC---CCHHHHHHHHHHHTCCEEEECTTCTTCHHH---HHHH-HHH
T ss_pred ccCCCHHHHHHHHHhcCCCcEEEEEecCCCCCCccc---ccHHHHHHHHHHcCCeEEEeCcchhhhhhh---hhhH-HHH
Confidence 57899999999998764344454444 444432232 468888999999999999999997654110 1111 122
Q ss_pred HHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHH
Q psy14428 371 AKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETE 450 (583)
Q Consensus 371 ~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~ 450 (583)
.+.+.--+++.|.-|++-+| +. |.+++. .+ +++++++...-.-..++.+.+.-+++...+....|++.+++..
T Consensus 270 ~~~GrAD~vVqS~HK~llvp-IG-G~ii~~-~d----~e~l~~~~~~yPGr~S~Spsldl~~tLL~lGr~Gy~~ll~e~~ 342 (501)
T 3hl2_A 270 ARVGRIDAFVQSLDKNFMVP-VG-GAIIAG-FN----DSFIQEISKMYPGRASASPSLDVLITLLSLGSNGYKKLLKERK 342 (501)
T ss_dssp HHHSCCCEEEEEHHHHHCCC-SS-CEEEEE-SC----HHHHHHHHHTSCSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCcEEEecccccceee-cC-ceEEEe-CC----HHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22221346888899998544 22 445431 44 4677776543211123444444555555555556666665555
Q ss_pred HHHHHHH
Q psy14428 451 RIMSQLK 457 (583)
Q Consensus 451 ~~~~~l~ 457 (583)
.....+.
T Consensus 343 ela~~L~ 349 (501)
T 3hl2_A 343 EMFSYLS 349 (501)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
|
| >3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=4.7e-07 Score=95.55 Aligned_cols=189 Identities=14% Similarity=0.057 Sum_probs=116.7
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHH-HHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEec-
Q psy14428 210 KFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRV-GTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRY- 287 (583)
Q Consensus 210 ~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l-~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~- 287 (583)
.+.+.+..++.+..|.+ ...-.++ ++|+|++... +...++....+++.|+++.-+.......+...|+.++.++.
T Consensus 98 ~~e~~~~~~~~~~lGlp-~~~~~~l--V~GaT~~~~a~~L~aar~~~~~~~~viv~r~aHkSv~kAl~l~Gl~p~~v~~~ 174 (450)
T 3bc8_A 98 KITNSLVLNVIKLAGVH-SVASCFV--VPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIENV 174 (450)
T ss_dssp HHHHHHHHHHHHHHTCT-TCCEEEE--ESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECCE
T ss_pred HHHHHHHHHHHHhCCCC-CCceEEE--ECCHHHHHHHHHHHHcchhhcCCCEEEEECCcHHHHHHHHHHcCCeeEEEEee
Confidence 34445555554433443 1223566 8888844444 32233333334799999988999999999999999888754
Q ss_pred ccCCCCCCChhhHHHHHHcCCCCcEEEEeCCC-CCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHH
Q psy14428 288 FDNKTNGLDFAGMMEDIKAMPERSILFLQTSS-HNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFS 366 (583)
Q Consensus 288 ~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p-~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~ 366 (583)
.+++..++|++.++++|++.....+++++.+| .|.+|.+ +.+++|+++|++||+++++|++|+..... ...
T Consensus 175 ~~~~~~~id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~---ddl~~Ia~ia~~~gi~l~VD~A~G~~~~~-----~~~ 246 (450)
T 3bc8_A 175 LEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVP---DRLEELAVICANYDIPHVVNNAYGLQSSK-----CMH 246 (450)
T ss_dssp EETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCC---CCHHHHHHHHHHHTCCEEEECTTTTTCHH-----HHH
T ss_pred ecCccCCcCHHHHHHHHHhcCCCCEEEEEEECCcCCCcee---cCHHHHHHHHHHCCCeEEEECCCchhhhh-----hHh
Confidence 12335789999999999765422344444443 3344444 45788899999999999999999864321 111
Q ss_pred H-HHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHH
Q psy14428 367 L-RYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKI 416 (583)
Q Consensus 367 ~-~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~ 416 (583)
+ .+..+...--.++.|.-|++. .-.-.+++.. .+ ++.++++..
T Consensus 247 l~~~a~~~~~AD~~v~S~HK~l~-a~~~~~~l~~--rd----~~~~~~~~~ 290 (450)
T 3bc8_A 247 LIQQGARVGRIDAFVQSLDKNFM-VPVGGAIIAG--FN----EPFIQDISK 290 (450)
T ss_dssp HHHHHHHHSCCCEEEEEHHHHHS-CCSSCEEEEE--SC----HHHHHHHHH
T ss_pred HHHHHhcccCCCEEEECCccCCC-chhccEEEEe--cC----HHHHHHHHH
Confidence 1 121121122346688999885 4445566666 54 355666543
|
| >4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=5.5e-06 Score=94.71 Aligned_cols=254 Identities=9% Similarity=0.066 Sum_probs=140.7
Q ss_pred CccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhH
Q psy14428 164 KKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGS 243 (583)
Q Consensus 164 ~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~a 243 (583)
..+|+..|.|....|.- ..+.+.+|+.+.++.- .+ +......-+....+|+.+.+..+.. .-+++++ +++|++|
T Consensus 381 ~ylD~~sg~~~~~lGh~-~~p~i~~Ai~~Q~~~l-~h-~~~~~~~~~~~~~Lae~L~~~~p~~-~l~~vff--~~SGSeA 454 (831)
T 4a0g_A 381 QQFDACASWWTQGPDPT-FQAELAREMGYTAARF-GH-VMFPENVYEPALKCAELLLDGVGKG-WASRVYF--SDNGSTA 454 (831)
T ss_dssp EEEETTHHHHTCCCCHH-HHHHHHHHHHHHHHHH-SS-CCCTTEECHHHHHHHHHHHHTTTTT-TCCEEEE--ESSHHHH
T ss_pred heeeecccHhhcCCCCC-CCHHHHHHHHHHHhhc-cc-ccccccCCHHHHHHHHHHHHhCCCC-CCCEEEE--CCChhHH
Confidence 34677777776655542 0367777766655431 11 1101111233334555554322100 1368999 9999999
Q ss_pred HHHHHHHH-HHh-CCC------------CCEEEEcCCCChhh-HHHHhhcCCe---------------E-----------
Q psy14428 244 LRVGTAFL-ERF-YPG------------VKTVYFPTPTWNGH-VRFCTDSRLN---------------V----------- 282 (583)
Q Consensus 244 l~l~~~~l-~~~-~~~------------gd~Vlv~~P~y~~~-~~~~~~~G~~---------------~----------- 282 (583)
.+.+..+. +.. ... ..+|+..+-+|..- ...+...|.. +
T Consensus 455 ~E~AlK~A~r~~~~~~g~~~~~~~~~~~r~~iI~~~~syHG~T~gals~tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 534 (831)
T 4a0g_A 455 IEIALKMAFRKFCVDHNFCEATEEEKHIVVKVIALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSN 534 (831)
T ss_dssp HHHHHHHHHHHHHHTTTC---------CCEEEEEETTCCCCSSHHHHHTSCCCGGGSTTTCTTCCCCEEEECCCEEEEET
T ss_pred HHHHHHHHHHHHHhhcCCCccccccccCccEEEEecCCcccCceeeeeccCccccccccccccccCCccccCCccccccC
Confidence 99876554 222 111 23688778777643 2333332210 0
Q ss_pred --EEEecccCCC---C---CC-C------------------hhhHHHHHHc----C-CCCcEEEEeCC-CCCCCCCCC-C
Q psy14428 283 --GAYRYFDNKT---N---GL-D------------------FAGMMEDIKA----M-PERSILFLQTS-SHNPTGVDL-S 328 (583)
Q Consensus 283 --~~v~~~d~~~---~---g~-d------------------~~~l~~~l~~----~-~~~~~~i~i~~-p~NPTG~~~-s 328 (583)
..++..+.-. . .+ + .+.+++.+++ . ..+..++++-. .++..|... +
T Consensus 535 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~ 614 (831)
T 4a0g_A 535 GSWNISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVD 614 (831)
T ss_dssp TEEEEECCTTSCCCCSSTTEESCHHHHHCGGGGGSHHHHHHHHHHHHHC---------CEEEEEEECCSEETTTTSEEEC
T ss_pred CceEecCCccccccccccccccchhhhhcccccchhhhHHHHHHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCC
Confidence 1122200000 0 00 1 1345555542 1 23344554433 278888665 8
Q ss_pred HHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccC-ccceEEEEEcCCchhH
Q psy14428 329 EDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYG-ERVGTFSVLTPTSDET 407 (583)
Q Consensus 329 ~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~G-lRiG~lv~~~p~~~~~ 407 (583)
++.+++|.++|++||+++|.||++..|...+. ......+ +-.+.++ +|||.++ .| +++|++++ +
T Consensus 615 ~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~---~fa~e~~-gv~PDii---tlsK~L~-gG~~Plgav~~--~----- 679 (831)
T 4a0g_A 615 PLFQRVLVNECRNRKIPVIFDEVFTGFWRLGV---ETTTELL-GCKPDIA---CFAKLLT-GGMVPLAVTLA--T----- 679 (831)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECTTTTTTTTSB---SSTHHHH-SSCCSEE---EECGGGG-TTSSCCEEEEE--C-----
T ss_pred HHHHHHHHHHHHHcCCeEEEEcCccccccCCC---chhhHhc-CCCCcEE---EEecccc-cCccCcEEEEE--C-----
Confidence 88999999999999999999999999866541 1222222 2223443 7999998 68 89999999 6
Q ss_pred HHHHHHHHHHH------hccccCCChHHHHHHHHHhC
Q psy14428 408 ERIMSQLKILI------RGFYSNPPIHGARIVTEILS 438 (583)
Q Consensus 408 ~~li~~l~~~~------~~~~~~~s~~~q~~~~~~l~ 438 (583)
+++++.+.... ....++.+++++.++.+.|+
T Consensus 680 ~~i~~~~~~~~~~~~~~hg~T~~g~Pla~Aaala~L~ 716 (831)
T 4a0g_A 680 DAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQ 716 (831)
T ss_dssp HHHHHTTCSSCGGGSCCCCCTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccccceeecCCcccHHHHHHHHHHHH
Confidence 57888775421 12345667787777666553
|
| >3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.30 E-value=3.9e-06 Score=87.09 Aligned_cols=181 Identities=11% Similarity=0.000 Sum_probs=115.3
Q ss_pred CChHHHHHHHHHhccCC--CC------CCCC--CCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEec-CCchhHHHHHHHH
Q psy14428 182 VLPSVKEAERRIYEKNL--DH------EYAN--IGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQG-ISGSGSLRVGTAF 250 (583)
Q Consensus 182 ~~~~v~~a~~~~~~~~~--~~------~Y~~--~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t-~G~~~al~l~~~~ 250 (583)
.++.|.+++.+.+.+.. .. ...+ ..-+.+.|+.++++++.. ++++|++ + .|+++++.++
T Consensus 24 ~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~-----~~~evif--~t~~~T~a~n~a--- 93 (377)
T 3e77_A 24 LPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVP-----DNYKVIF--LQGGGCGQFSAV--- 93 (377)
T ss_dssp CCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCC-----TTEEEEE--ESSHHHHHHHHH---
T ss_pred CCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCC-----CCCeEEE--EcCchHHHHHHH---
Confidence 56788888877664310 00 0000 112356788888888521 2246776 5 7899999986
Q ss_pred HHHhCC--CCCEEEEcCCC-Chh-hHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCC
Q psy14428 251 LERFYP--GVKTVYFPTPT-WNG-HVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVD 326 (583)
Q Consensus 251 l~~~~~--~gd~Vlv~~P~-y~~-~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~ 326 (583)
+..+.. +||+|++..-+ |.. +...++..|..++.++. +. +++.+++.++..+ .++++++.+++..|.||+.
T Consensus 94 ~~~l~~~~~Gd~v~~~~~g~~~~~~~~~a~~~G~~~~~~~~-~~-~~~~~~~~~~~~i---~~~t~lV~~~h~et~tG~~ 168 (377)
T 3e77_A 94 PLNLIGLKAGRCADYVVTGAWSAKAAEEAKKFGTINIVHPK-LG-SYTKIPDPSTWNL---NPDASYVYYCANETVHGVE 168 (377)
T ss_dssp HHHHGGGSTTCEEEECCCSHHHHHHHHHHTTTSEEEECSCC-CS-SSCSCCCGGGCCC---CTTCSCEEEESEETTTTEE
T ss_pred HHhccCCCCCCeEEEEECCHHHHHHHHHHHHhCCceEEecc-CC-CcCCCCChHHhcc---CCCccEEEEeCccCchheE
Confidence 233333 38998766554 322 23455667877777776 43 3566776654333 6778888888888999999
Q ss_pred CCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEE
Q psy14428 327 LSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSV 399 (583)
Q Consensus 327 ~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~ 399 (583)
.+. +|+++++++++|-+-.--...= + + +..+ + ++.|--|.+|-+| +|++++
T Consensus 169 ~pi--------i~~~~~~~~~vD~~q~~g~~~i---d---~----~~~~-~-~~~s~~K~~gp~G--~g~l~~ 219 (377)
T 3e77_A 169 FDF--------IPDVKGAVLVCDMSSNFLSKPV---D---V----SKFG-V-IFAGAQKNVGSAG--VTVVIV 219 (377)
T ss_dssp CSS--------CCCCTTCCEEEECTTTTTSSCC---C---G----GGCS-E-EEEEGGGTTSCTT--CEEEEE
T ss_pred chh--------hhccCCCEEEEEcccccCCCCC---c---h----hhcC-E-EEEecccccCCCc--cEEEEE
Confidence 885 3678899999999865433210 1 1 2223 4 6678899999778 588888
|
| >4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=6.7e-06 Score=87.59 Aligned_cols=253 Identities=11% Similarity=0.024 Sum_probs=146.6
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCC--CCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecC
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNL--DHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGI 238 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~--~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~ 238 (583)
.+...+|+..|.+....|.- .+.+.+++.+.+.... ...+.+.....+|-+.+++..-. -..+++.+ ++
T Consensus 62 dG~~ylD~~~g~~~~~lGh~--~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~-----~~~~~v~f--~~ 132 (456)
T 4atq_A 62 DGNSFIDLGSGIAVTSVGAS--DPAVVAAVQEAAAHFTHTCFMVTPYEGYVAVTEQLNRLTPG-----DHAKRTVL--FN 132 (456)
T ss_dssp TSCEEEESSHHHHTCTTCTT--CHHHHHHHHHHHHHCSCCTTTTSCCHHHHHHHHHHHHHSSC-----SSCEEEEE--ES
T ss_pred CCCEEEEccccHHHHhcCCC--CHHHHHHHHHHHhhccCcccCccCcHHHHHHHHHHHHhCCC-----CCCcEEEE--eC
Confidence 45567888888776666643 4677777766655411 11222333334555555554321 12357888 89
Q ss_pred CchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHH-hhcC-------------CeEEEEecccC---CCCC-CChhhH
Q psy14428 239 SGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFC-TDSR-------------LNVGAYRYFDN---KTNG-LDFAGM 300 (583)
Q Consensus 239 G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~-~~~G-------------~~~~~v~~~d~---~~~g-~d~~~l 300 (583)
+|++|.+.+..+.+.... .+.|+..+-+|.+..... ...+ ..+..+|.... .... -+.+.+
T Consensus 133 sGsEA~e~AlklAr~~t~-r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~ 211 (456)
T 4atq_A 133 SGAEAVENAVKVARLATG-RDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAA 211 (456)
T ss_dssp SHHHHHHHHHHHHHHHHC-CCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHH
T ss_pred ChHHHHHHHHHHHhhhhc-CCeEEEEecccCCccccccccccCccccccCCCCccccceecccccccccCCCcccHHHHH
Confidence 999999988766665544 578888888887653222 1111 12444444111 1011 122333
Q ss_pred HHHHH---c-C-CCCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhc
Q psy14428 301 MEDIK---A-M-PERSILFLQTSSHNPTGV-DLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEV 374 (583)
Q Consensus 301 ~~~l~---~-~-~~~~~~i~i~~p~NPTG~-~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~ 374 (583)
.+.++ . . .....++++-.-+.-.|. ..+++-+++|.++|++||+++|.||+...|.--+. ......+ +-.
T Consensus 212 ~~~~~~~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG~---~~a~e~~-gv~ 287 (456)
T 4atq_A 212 KRAITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGE---WFAVDHE-GVV 287 (456)
T ss_dssp HHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSGGGGT-TCC
T ss_pred HHHHHHHHHhhcCCceEEEEeccccCCCCccccchhhhHHHHHHHhhcCCceEecccccccCCccc---ccccccc-CCC
Confidence 22222 1 1 223444444333433454 45778999999999999999999999988754331 1111111 112
Q ss_pred CcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhC
Q psy14428 375 GQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILS 438 (583)
Q Consensus 375 ~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~ 438 (583)
+.++ +++|.+| .|+-+|.+++ . +++++.+........++.++++..++.+.|+
T Consensus 288 PDiv---t~gK~lg-gg~P~~av~~--~-----~~i~~~~~~~~~~~Tf~gnpla~aaala~L~ 340 (456)
T 4atq_A 288 PDII---TMAKGIA-GGLPLSAITG--R-----ADLLDAVHPGGLGGTYGGNPVACAAALAAID 340 (456)
T ss_dssp CSEE---EECGGGG-TTSSCEEEEE--E-----HHHHTTSCTTSSCCSSSSCHHHHHHHHHHHH
T ss_pred Cchh---hhhhccc-CcCCceeeEe--c-----HHHHhcccccCCCCCCCCChHHHHhhHHHHH
Confidence 3333 5689998 8999999999 5 4677766544333456667777776666554
|
| >3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=98.25 E-value=2e-05 Score=81.41 Aligned_cols=187 Identities=11% Similarity=-0.016 Sum_probs=114.8
Q ss_pred CChHHHHHHHHHhccCC---CC----CC-CC--CCCCHHHHHHHHHHHhCCCCCCCCCCCeE-EEecCCchhHHHHHHHH
Q psy14428 182 VLPSVKEAERRIYEKNL---DH----EY-AN--IGGDAKFCKLAAQLAYGEDFPAFKDNRLA-IVQGISGSGSLRVGTAF 250 (583)
Q Consensus 182 ~~~~v~~a~~~~~~~~~---~~----~Y-~~--~~G~~~Lr~aia~~~~~~~g~~~~~~~I~-i~~t~G~~~al~l~~~~ 250 (583)
+++.|.+++.+.+.+.. .. .+ .+ ..-+.+.|+.++++++.. ++++|+ + |.|+++++.++
T Consensus 16 ~~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~~~-----~~~~v~f~--t~~~T~a~n~~--- 85 (361)
T 3m5u_A 16 LPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELN-----DDYEVLFL--QGGASLQFAMI--- 85 (361)
T ss_dssp CCHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTCC-----TTEEEEEE--SSHHHHHHHHH---
T ss_pred CcHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhCCC-----CCceEEEE--cCcHHHHHHHH---
Confidence 66888888877654210 00 01 00 122456778888888531 234554 5 89999999986
Q ss_pred HHHhCCCCCEEE-EcCCCChh-hHHHHhhcCCeEEEEecccCCC-CCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCC
Q psy14428 251 LERFYPGVKTVY-FPTPTWNG-HVRFCTDSRLNVGAYRYFDNKT-NGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDL 327 (583)
Q Consensus 251 l~~~~~~gd~Vl-v~~P~y~~-~~~~~~~~G~~~~~v~~~d~~~-~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~ 327 (583)
+..+. +||++. +.+-.|.. ....++..|+++..++. +... +.++++. + + .++++++.+++..|.||...
T Consensus 86 ~~~~~-~~~~~~~i~~~~~~~~~~~~a~~~G~~v~~~~~-~~~g~~~~~~~~--~-l---~~~t~lv~~~~~e~~tG~~~ 157 (361)
T 3m5u_A 86 PMNLA-LNGVCEYANTGVWTKKAIKEAQILGVNVKTVAS-SEESNFDHIPRV--E-F---SDNADYAYICSNNTIYGTQY 157 (361)
T ss_dssp HHHHC-CSSCEEEEECSHHHHHHHHHHHHTTCCEEEEEE-CTTTTSCSCCCC--C-C---CTTSSEEEEESEETTTTEEC
T ss_pred HHhcC-CCCeEEEEeCCHHHHHHHHHHHHcCCceEEEec-ccCcCCCcCChh--h-c---CCCCCEEEEeCCCCCcceeC
Confidence 33344 478652 22223332 23455677999999998 5432 1145555 3 4 66788888888888999987
Q ss_pred CHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhH
Q psy14428 328 SEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDET 407 (583)
Q Consensus 328 s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~ 407 (583)
+. +++ +++++++|.+-.--... . +. +. --+++.|--|.+|-+| +|++++ .
T Consensus 158 ~~--------i~~-~~~~~~vD~~q~~g~~~-i--d~-------~~--~d~~~~s~~K~~gp~G--~g~l~~--~----- 207 (361)
T 3m5u_A 158 QN--------YPK-TKTPLIVDASSDFFSRK-V--DF-------SN--IALFYGGVQKNAGISG--LSCIFI--R----- 207 (361)
T ss_dssp SS--------CCC-CSSCEEEECGGGTTSSC-C--CC-------TT--EEEEEEETTTTSSCTT--CEEEEE--E-----
T ss_pred Cc--------ccc-cCCEEEEEcccccCCCC-C--Cc-------cc--CCEEEEechhccCCCc--cEEEEE--c-----
Confidence 62 233 49999999985432221 0 11 11 1267788999998777 588988 5
Q ss_pred HHHHHHHHH
Q psy14428 408 ERIMSQLKI 416 (583)
Q Consensus 408 ~~li~~l~~ 416 (583)
+++.+++..
T Consensus 208 ~~~~~~~~~ 216 (361)
T 3m5u_A 208 KDMLERSKN 216 (361)
T ss_dssp HHHHHHHHT
T ss_pred HHHHhhhcC
Confidence 466666653
|
| >3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=4.5e-06 Score=87.01 Aligned_cols=158 Identities=9% Similarity=0.029 Sum_probs=102.7
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCC-Chh-hHHHHhhcCCeEE
Q psy14428 206 GGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPT-WNG-HVRFCTDSRLNVG 283 (583)
Q Consensus 206 ~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~-y~~-~~~~~~~~G~~~~ 283 (583)
.-+.+.|+.++++++.. ++++|++ -|.|+++++.++ +..+..+||+|++..-+ |.. +...++..| ++.
T Consensus 72 ~~~~~ar~~la~ll~~~-----~~~evif-~t~~~T~a~n~a---i~~l~~~gd~v~~~~~~~~~~~~~~~a~~~G-~v~ 141 (386)
T 3qm2_A 72 QVAEEAEQDFRDLLNIP-----SNYKVLF-CHGGGRGQFAGV---PLNLLGDKTTADYVDAGYWAASAIKEAKKYC-APQ 141 (386)
T ss_dssp -CCHHHHHHHHHHHTCC-----TTEEEEE-EESCTTHHHHHH---HHHHCTTCCEEEEEESSHHHHHHHHHHTTTS-EEE
T ss_pred HHHHHHHHHHHHHhCCC-----CCceEEE-EcCCchHHHHHH---HHhccCCCCeEEEEeCCHHHHHHHHHHHHhC-CeE
Confidence 45688999999999631 2246766 148999999986 34445669987643332 332 234456678 888
Q ss_pred EEeccc--CCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCC
Q psy14428 284 AYRYFD--NKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVD-LSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDF 360 (583)
Q Consensus 284 ~v~~~d--~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~-~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~ 360 (583)
.++. + ++...++++.++..+ .++++++.+++-.|.||.. .+.+++ . +++++++|-+-.--...
T Consensus 142 ~v~~-~~~~~G~~~~~~~~~~~l---~~~t~lV~~~h~et~tG~~i~pi~~i---~-----~g~~~~vDa~qs~g~~p-- 207 (386)
T 3qm2_A 142 IIDA-KITVDGKRAVKPMREWQL---SDNAAYLHYCPNETIDGIAIDETPDF---G-----PEVVVTADFSSTILSAP-- 207 (386)
T ss_dssp EEEC-EEEETTEEEECCGGGCCC---CTTCSCEEECSEETTTTEECCCCCCC---C-----TTCCEEEECTTTTTSSC--
T ss_pred EEec-CcccCCCCCCchHHHhhc---CCCCcEEEEECCcCCcCEecCchhhh---c-----CCCEEEEEcccccCCCC--
Confidence 8887 4 221125666665444 5778888889888899996 544443 2 79999999986433221
Q ss_pred CCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEE
Q psy14428 361 DKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSV 399 (583)
Q Consensus 361 ~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~ 399 (583)
-+ + +..+ + .+.|--|.+|-+| +|++++
T Consensus 208 -id---v----~~~~-~-~~~s~hK~lGP~G--~g~l~v 234 (386)
T 3qm2_A 208 -LD---V----SRYG-V-IYAGAQKNIGPAG--LTLVIV 234 (386)
T ss_dssp -CC---G----GGCS-E-EEEETTTTTCCTT--EEEEEE
T ss_pred -CC---c----cccC-E-EEEecccccCCCc--cEEEEE
Confidence 01 1 2223 4 5588899998667 599988
|
| >4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A | Back alignment and structure |
|---|
Probab=98.19 E-value=0.00014 Score=77.76 Aligned_cols=255 Identities=13% Similarity=0.132 Sum_probs=145.6
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCC-CHHHHHHHHHHHhCCCCCCCCCCCeEEEecCC
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGG-DAKFCKLAAQLAYGEDFPAFKDNRLAIVQGIS 239 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G-~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G 239 (583)
.+...+|+..|.+....|.- .+.+.+++.+.++. ...|....| ..+....+|+.+.+.. +..-++|.+ +++
T Consensus 65 dG~~ylD~~~g~~~~~lGh~--~p~v~~Ai~~q~~~--l~~~~~~~~~~~~~~~~lAe~L~~~~--p~~~~~v~f--~~s 136 (473)
T 4e3q_A 65 NGRRYLDANSGLWNMVAGFD--HKGLIDAAKAQYER--FPGYHAFFGRMSDQTVMLSEKLVEVS--PFDSGRVFY--TNS 136 (473)
T ss_dssp TCCEEEETTTTTTTCTTCSC--CHHHHHHHHHHHHH--CCCCCCCTTEEEHHHHHHHHHHHHHS--SCSSCEEEE--ESS
T ss_pred CCCEEEEcccCHHHhhccCC--CHHHHHHHHHHHHh--cccccccccccCHHHHHHHHHHHhhC--CCCccEEEE--eCc
Confidence 56678999999887776753 47777777766654 112222222 1233334455443321 123468999 999
Q ss_pred chhHHHHHHHHHHHh-----CCCCCEEEEcCCCChhhHH-HHhhcCC-----------eEEEEecccC---CCCCCC---
Q psy14428 240 GSGSLRVGTAFLERF-----YPGVKTVYFPTPTWNGHVR-FCTDSRL-----------NVGAYRYFDN---KTNGLD--- 296 (583)
Q Consensus 240 ~~~al~l~~~~l~~~-----~~~gd~Vlv~~P~y~~~~~-~~~~~G~-----------~~~~v~~~d~---~~~g~d--- 296 (583)
|++|.+.+..+.+.. .+....|+...-+|..... .+...|- ..+.++..+. ...+-.
T Consensus 137 GsEA~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 216 (473)
T 4e3q_A 137 GSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQ 216 (473)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCGGGGGGTCSCTTEEEECCCCHHHHSCTTCCHHH
T ss_pred hHHHHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCccccccccccccccccCCCCCcccccCCCcccccccccchhhH
Confidence 999999876554432 1223577877778766422 2221111 1222322100 001111
Q ss_pred -----hhhHHHHHHcCCC-CcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHH
Q psy14428 297 -----FAGMMEDIKAMPE-RSILFLQTSSHNPTGV-DLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRY 369 (583)
Q Consensus 297 -----~~~l~~~l~~~~~-~~~~i~i~~p~NPTG~-~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~ 369 (583)
.+.+++.+.+... ...++++..-+.-.|. ..+++-+++|.++|+++|+++|.||+...|.--+ .......
T Consensus 217 ~~~~~~~~l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~tGfGRtG---~~fa~e~ 293 (473)
T 4e3q_A 217 FVARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTG---NTWGCVT 293 (473)
T ss_dssp HHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTTTSSSTTS---SSCHHHH
T ss_pred HHHHHHHHHHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEeccCccccCCccc---chhHHHh
Confidence 2334444543333 3444554444444554 4567889999999999999999999999985433 1222222
Q ss_pred HHHhcCcEEEEecCcccccccC-ccceEEEEEcCCchhHHHHHHHHHHHH-------hccccCCChHHHHHHHHHhC
Q psy14428 370 FAKEVGQLCLAQSFSKNMGLYG-ERVGTFSVLTPTSDETERIMSQLKILI-------RGFYSNPPIHGARIVTEILS 438 (583)
Q Consensus 370 ~~~~~~~vi~i~S~SK~~~l~G-lRiG~lv~~~p~~~~~~~li~~l~~~~-------~~~~~~~s~~~q~~~~~~l~ 438 (583)
+ +-.+.++ +++|.++ .| +-+|.+++ . +++.+.+.... ....++.++++..++.+.|+
T Consensus 294 ~-gv~PDi~---t~~K~l~-gG~~Pl~av~~--~-----~~i~~~~~~~~~~~~~~~hg~T~~Gnpla~Aaala~L~ 358 (473)
T 4e3q_A 294 Y-DFTPDAI---ISSKNLT-AGFFPMGAVIL--G-----PELSKRLETAIEAIEEFPHGFTASGHPVGCAIALKAID 358 (473)
T ss_dssp T-TCCCSEE---EECGGGG-TTSSCCEEEEE--C-----HHHHHHHHHHHHHHSCCCCCCTTTTCHHHHHHHHHHHH
T ss_pred c-CCCCChH---Hhccccc-CCCCCcccccc--c-----HHHHHHhccccccccccccCCCCCCCcchhhhhhhhhh
Confidence 2 2233444 4689998 66 99999999 6 57888776532 12244556666666655543
|
| >3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} | Back alignment and structure |
|---|
Probab=97.94 E-value=7.7e-06 Score=87.08 Aligned_cols=72 Identities=29% Similarity=0.606 Sum_probs=64.9
Q ss_pred ceecccchhHHHHHHHHHHhhcCCCeEEecCCCCcCchhhhhh----cCCCceeeeeccCCC-CcccchhhhHHHHHh
Q psy14428 3 IVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCT----DSRLNVGAYRYFDNK-TNGLDFAGMMEDIKL 75 (583)
Q Consensus 3 ~~q~~~~tg~~~~~~~~~~~~~~~~~~~~~~~p~w~n~~~~~~----~~~~~~~~y~~~~~~-~~~~d~~~~~~~~~~ 75 (583)
.+||.|||||+.+++.++..+.++ .+|++++|+|.+|..+++ ..|.++..|+++|+. +.++|++.+.+.++.
T Consensus 122 ~~~t~ggt~al~l~~~~~~~~~~g-d~Vlv~~p~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~~~~~d~e~l~~~l~~ 198 (448)
T 3meb_A 122 SCQSLSGTGSLHIGFEFLHLWMPK-AEFYMPSTTWPNHYGIYDKVFNKLKVPYKEYTYLRKDGELEIDFSNTKKDIQS 198 (448)
T ss_dssp EEEESHHHHHHHHHHHHHHHHCTT-CCEEEESSCCTHHHHHHHHHHCTTTSCCEEECCBCTTSCSSBCHHHHHHHHHH
T ss_pred EEECCcHHHHHHHHHHHHHHhCCC-CEEEECCCCCHhHHHHHHhhHHhCCCeEEEEeccccccCCCcCHHHHHHHHHh
Confidence 379999999999998888777666 689999999999999999 999999999999988 889999999887764
|
| >3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=97.67 E-value=2.6e-05 Score=81.86 Aligned_cols=71 Identities=23% Similarity=0.455 Sum_probs=64.5
Q ss_pred ceecccchhHHHHHHHHHHhhcCCCeEEecCCCCcCchhhhhhcCCCceeeeeccCCCCcccchhhhHHHHHh
Q psy14428 3 IVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKL 75 (583)
Q Consensus 3 ~~q~~~~tg~~~~~~~~~~~~~~~~~~~~~~~p~w~n~~~~~~~~~~~~~~y~~~~~~~~~~d~~~~~~~~~~ 75 (583)
.+||.+|+|||+++..+|.++.+ .+|.+++|+|.+|..+++.+|.++..|+++++.+-++|++.+.+.++.
T Consensus 100 i~~t~G~~~al~~~~~~l~~~~~--d~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~ 170 (405)
T 3k7y_A 100 TIQCIGGTGAIFVLLEFLKMLNV--ETLYVTNPPYINHVNMIESRGFNLKYINFFDYNLIDINYDLFLNDLRN 170 (405)
T ss_dssp EEEEEHHHHHHHHHHHHHHTTTC--CEEEEESSCCHHHHHHHHTTTCEEEEECCEETTTTEECHHHHHHHHHH
T ss_pred EEEcCchHHHHHHHHHHHHhcCC--CEEEEeCCCCHhHHHHHHHcCCeEEEEeccccccCCcCHHHHHHHHHh
Confidence 48999999999999999988765 689999999999999999999999999998887789999999887764
|
| >3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00072 Score=70.54 Aligned_cols=194 Identities=13% Similarity=0.074 Sum_probs=106.0
Q ss_pred CChHHHHHHHHHhccCCCCCCCC------CCCCHHHHHHHHHHHhCCCCCCCCCC--CeEEEecCCchhHHHHHHHHHHH
Q psy14428 182 VLPSVKEAERRIYEKNLDHEYAN------IGGDAKFCKLAAQLAYGEDFPAFKDN--RLAIVQGISGSGSLRVGTAFLER 253 (583)
Q Consensus 182 ~~~~v~~a~~~~~~~~~~~~Y~~------~~G~~~Lr~aia~~~~~~~g~~~~~~--~I~i~~t~G~~~al~l~~~~l~~ 253 (583)
..+.+.+++...+.+....+|+. ..-..++.+...+...+-+|.+.... ||-. -+| ++|... .+..
T Consensus 66 ~S~aV~~a~gS~ltnKYaEGyPg~RyYgGce~vD~iE~la~~rak~lF~a~~A~w~VNVQP--~SG-s~AN~a---vy~A 139 (490)
T 3ou5_A 66 CSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQP--YSG-SPANLA---VYTA 139 (490)
T ss_dssp CCHHHHHHHTSGGGTCCCCC----------CHHHHHHHHHHHHHHHHTTCCTTTEEEECCC--SSH-HHHHHH---HHHH
T ss_pred CCHHHHHHhcCcccccccCCCCCccccCCChHHHHHHHHHHHHHHHHhCCCccccCCCCCc--CCH-HHHHHH---HHHH
Confidence 56888888877776533334432 22233444433444444444332221 3443 444 445544 3455
Q ss_pred hCCCCCEEEEcCCCChhhHHH----------HhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCC
Q psy14428 254 FYPGVKTVYFPTPTWNGHVRF----------CTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPT 323 (583)
Q Consensus 254 ~~~~gd~Vlv~~P~y~~~~~~----------~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPT 323 (583)
+++|||+|+..+..-.++..- +...-.+.+++++ |+++..+|.+.+++..++ .++++|+..--.+|-
T Consensus 140 ll~PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~v-d~~t~~IDyd~~~~~A~~--~kPklIi~G~SaY~r 216 (490)
T 3ou5_A 140 LLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKL-NPKTGLIDYNQLALTARL--FRPRLIIAGTSAYAR 216 (490)
T ss_dssp HCC-CCCEECBC----------------------------CBCE-ETTTTEECHHHHHHHHHH--HCCSEEEECCSSCCS
T ss_pred HcCCCCEEEecccCCCCcccccccCCCccccccccccccccccc-CCCCCcccHHHHHHHHhh--cCCCeEEECCccCcc
Confidence 677799999998876665321 1111235677777 777778999999887764 356677765444443
Q ss_pred CCCCCHHHHHHHHHHHHhcCeEEEEeccCC-CCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEE
Q psy14428 324 GVDLSEDQWRQLAVVVKQRHLYPFFDMAYL-GLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSV 399 (583)
Q Consensus 324 G~~~s~~~~~~l~~~a~~~~i~iI~De~Y~-~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~ 399 (583)
.++ ++++.++|.+-|.+++.|-++. +|.-.+.. +.|+. + --|+..|.-|++ +|=|-|.+++
T Consensus 217 --~id---~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~--psP~~-----~-ADvVTtTTHKTL--rGPrGG~Il~ 278 (490)
T 3ou5_A 217 --LID---YARMREVCDEVKAHLLADMAHISGLVAAKVI--PSPFK-----H-ADIVTTTTHKTL--RGARSGLIFY 278 (490)
T ss_dssp --CCC---HHHHHHHHHHHTCEEEEECGGGHHHHHTTSS--CCGGG-----T-CSEEEEESSSTT--CSCSCEEEEE
T ss_pred --ccC---HHHHHHHHhhcccEEEechhhhhhhhccccc--CCccc-----c-ceEEeccccccc--cCCCceEEEe
Confidence 234 4566666778899999999963 33333311 11221 1 236678889997 7999999998
|
| >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0009 Score=69.47 Aligned_cols=72 Identities=54% Similarity=0.987 Sum_probs=63.1
Q ss_pred eecccchhHHHHHHHHHHhhcCCCeEEecCCCCcCchhhhhhcCCCceeeeeccCCCCcccchhhhHHHHHh
Q psy14428 4 VQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKL 75 (583)
Q Consensus 4 ~q~~~~tg~~~~~~~~~~~~~~~~~~~~~~~p~w~n~~~~~~~~~~~~~~y~~~~~~~~~~d~~~~~~~~~~ 75 (583)
|||-|||+|+.++...+..+..+..+|.+++|+|.+|..+++..|.++..+++.++...++|++.+.++++.
T Consensus 100 v~t~G~~~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~ 171 (401)
T 7aat_A 100 VQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISK 171 (401)
T ss_dssp EEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTT
T ss_pred EecCcchHHHHHHHHHHHHhccCCCEEEEcCCCchhHHHHHHHcCCeeEeeeeeccccCccCHHHHHHHHHh
Confidence 689999999999998887665433789999999999999999999999999998887889999988887754
|
| >4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0012 Score=69.07 Aligned_cols=72 Identities=33% Similarity=0.714 Sum_probs=63.0
Q ss_pred ceecccchhHHHHHHHHHHhhcCCCeEEecCCCCcCchhhhhhcCCCceeeeeccCCCCcccchhhhHHHHHh
Q psy14428 3 IVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKL 75 (583)
Q Consensus 3 ~~q~~~~tg~~~~~~~~~~~~~~~~~~~~~~~p~w~n~~~~~~~~~~~~~~y~~~~~~~~~~d~~~~~~~~~~ 75 (583)
.++|-|||+||.+++.++...-++ .+|.+++|+|.++..+++..|.++..|+++++.+.++|++.+.+.++.
T Consensus 120 i~~t~G~t~al~~~~~~~~~~~~g-d~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~ 191 (420)
T 4f4e_A 120 TAQALGGTGALKIGADFLRTLNPK-AKVAISDPSWENHRALFDMAGFEVVAYPYYDAKTNGVNFDGMLAALNG 191 (420)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHCTT-CCEEEEESCCHHHHHHHHHTTCCEEEEECEETTTTEECHHHHHHHHTT
T ss_pred EEECCccHHHHHHHHHHHHHhCCC-CEEEEeCCCcHhHHHHHHHcCCeEEEeeeeccccCccCHHHHHHHHHh
Confidence 478899999999998877665566 679999999999999999999999999998888889999988877653
|
| >4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.002 Score=67.10 Aligned_cols=72 Identities=31% Similarity=0.649 Sum_probs=61.6
Q ss_pred eecccchhHHHHHHHHHHhhcCCCeEEecCCCCcCchhhhhhcCCCceeeeeccCCCCcccchhhhHHHHHh
Q psy14428 4 VQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKL 75 (583)
Q Consensus 4 ~q~~~~tg~~~~~~~~~~~~~~~~~~~~~~~p~w~n~~~~~~~~~~~~~~y~~~~~~~~~~d~~~~~~~~~~ 75 (583)
+|+.+||||+.+...++..+.++..+|.+++|+|.++..+++..|.++..++..+....++|++.+.+.++.
T Consensus 108 ~~~~~g~ga~~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~ 179 (409)
T 4eu1_A 108 CQTLGGTGALRIGGDLLNRFVANCNRIYGPDVGYPNHESIFAKAGMELTPYSYYDPATKGLNLAGMLECLDK 179 (409)
T ss_dssp EEESHHHHHHHHHHHHGGGTSSSCCEEEEESSCCTHHHHHHHHTTCEEEEECCEETTTTEECHHHHHHHHHH
T ss_pred eecccchHHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHcCCeEEEEEeecCcCCcCcHHHHHHHHHh
Confidence 689999999999988776665444689999999999999999999999999988777788999888776643
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.001 Score=70.01 Aligned_cols=68 Identities=18% Similarity=0.291 Sum_probs=59.7
Q ss_pred eecccchhHHHHHHHHHHhhcCCCeEEecCCCCcCchhhhhhcCCCceeeeeccCCCCcccchhhhHHHHH
Q psy14428 4 VQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIK 74 (583)
Q Consensus 4 ~q~~~~tg~~~~~~~~~~~~~~~~~~~~~~~p~w~n~~~~~~~~~~~~~~y~~~~~~~~~~d~~~~~~~~~ 74 (583)
+.|-|||+||.++..+|.+ ++ .+|++++|+|.+|..+++..|.++..|++.+..+.++|++.+.+.++
T Consensus 122 ~~t~g~t~al~~~~~~l~~--~g-d~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~ 189 (427)
T 3dyd_A 122 ILTSGCSQAIDLCLAVLAN--PG-QNILVPRPGFSLYKTLAESMGIEVKLYNLLPEKSWEIDLKQLEYLID 189 (427)
T ss_dssp EEESSHHHHHHHHHHHHCC--TT-CEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHSSCC
T ss_pred EEecCcHHHHHHHHHHhcC--CC-CEEEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHhc
Confidence 6788999999999999865 55 68999999999999999999999999999887788899988766553
|
| >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=95.47 E-value=0.012 Score=61.12 Aligned_cols=70 Identities=36% Similarity=0.837 Sum_probs=57.7
Q ss_pred eecccchhHHHHHHHHHHhhcCCCeEEecCCCCcCchhhhhhcCCCceeeeeccCCCCcccchhhhHHHHH
Q psy14428 4 VQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIK 74 (583)
Q Consensus 4 ~q~~~~tg~~~~~~~~~~~~~~~~~~~~~~~p~w~n~~~~~~~~~~~~~~y~~~~~~~~~~d~~~~~~~~~ 74 (583)
+||-|||+|+.++..++..+-++ .+|.+++|+|..+..+++..|.++..++..++.+.++|++.+.+.++
T Consensus 102 ~~t~g~~~a~~~~~~~~~~~~~g-d~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~ 171 (412)
T 1yaa_A 102 VQSLSGTGALHISAKFFSKFFPD-KLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLDLNGFLNAIQ 171 (412)
T ss_dssp EEEEHHHHHHHHHHHHHHHHCTT-CCEEEEESCCTTHHHHHHTTTCCEEEEECEETTTTEECHHHHHHHHH
T ss_pred EeccchHhHHHHHHHHHHHhCCC-CEEEEeCCCCccHHHHHHHcCceEEEEeeecCCCCccCHHHHHHHHH
Confidence 58999999999997776655456 57999999999999999999999999998666567788877655443
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} | Back alignment and structure |
|---|
Probab=93.91 E-value=0.061 Score=57.62 Aligned_cols=70 Identities=11% Similarity=0.069 Sum_probs=60.9
Q ss_pred eecccchhHHHHHHHHHH-hhcCCCeEEecCCCCcCchhhhhhcCCCceeeeeccCCCCcccchhhhHHHHHhh
Q psy14428 4 VQGISGSGSLRVGTAFLE-RFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKLA 76 (583)
Q Consensus 4 ~q~~~~tg~~~~~~~~~~-~~~~~~~~~~~~~p~w~n~~~~~~~~~~~~~~y~~~~~~~~~~d~~~~~~~~~~a 76 (583)
+.|-|||+||.++...|. + ++ .+|++++|+|.++...++..|.++..|+..+..+.++|++.+.+.++.+
T Consensus 161 ~~t~G~~~al~~~~~~l~~~--~g-d~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~ 231 (500)
T 3tcm_A 161 FLTDGASPGVHLMMQLLIRN--EK-DGILVPIPQYPLYSASIALHGGALVPYYLNESTGWGLETSDVKKQLEDA 231 (500)
T ss_dssp EEESSSHHHHHHHHHHHCCS--TT-EEEEEEESCCTHHHHHHHHTTCEEEEEECBTTTTSBCCHHHHHHHHHHH
T ss_pred EEcCCHHHHHHHHHHHHcCC--CC-CEEEEeCCCcHhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHH
Confidence 567789999999988874 3 45 6899999999999999999999999999888777799999998888764
|
| >2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* | Back alignment and structure |
|---|
Probab=93.42 E-value=0.049 Score=55.93 Aligned_cols=69 Identities=36% Similarity=0.686 Sum_probs=55.9
Q ss_pred eecccchhHHHHHHHHHHhhcCCCeEEecCCCCcCchhhhhhcCCCceeeeeccCCCCcccchhhhHHHH
Q psy14428 4 VQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDI 73 (583)
Q Consensus 4 ~q~~~~tg~~~~~~~~~~~~~~~~~~~~~~~p~w~n~~~~~~~~~~~~~~y~~~~~~~~~~d~~~~~~~~ 73 (583)
+||-|||+|+.++...+.++.++ .+|.+++|+|..+...++..|.++..++.....+.++|++.+.+.+
T Consensus 95 ~~~~g~~~a~~~~~~~~~~~~~g-d~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l 163 (394)
T 2ay1_A 95 LATVGGTGALRQALELARMANPD-LRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADL 163 (394)
T ss_dssp EEEEHHHHHHHHHHHHHHHHCTT-CCEEEEESCCHHHHHHHHHHTCCEEEEECEETTTTEECHHHHHHHH
T ss_pred EecCCchhHHHHHHHHHHhcCCC-CEEEEcCCCChhHHHHHHHcCCceEEEecccccCCccCHHHHHHHH
Confidence 47999999999999888765566 5799999999999999999999998888754445667877655443
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} | Back alignment and structure |
|---|
Probab=93.05 E-value=0.091 Score=54.43 Aligned_cols=69 Identities=17% Similarity=0.359 Sum_probs=56.9
Q ss_pred ceecccchhHHHHHHHHHHhhcCCCeEEecCCCCcCchhhhhhcCCCceeeeeccCCCCcccchhhhHHHHHh
Q psy14428 3 IVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKL 75 (583)
Q Consensus 3 ~~q~~~~tg~~~~~~~~~~~~~~~~~~~~~~~p~w~n~~~~~~~~~~~~~~y~~~~~~~~~~d~~~~~~~~~~ 75 (583)
.+.|-|||+||.++...+.+ ++ .+|.+++|+|.++..+++..|.++..++..+.. .++|++.+.+.++.
T Consensus 105 i~~t~g~~~al~~~~~~l~~--~g-d~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~-~~~d~~~l~~~l~~ 173 (418)
T 3rq1_A 105 SIATAGGTGGIHHLIHNYTE--PG-DEVLTADWYWGAYRVICSDTGRTLVTYSLFDEH-NNFNHEAFQNRVNE 173 (418)
T ss_dssp EEEESHHHHHHHHHHHHHSC--TT-CEEEEESSCCTHHHHHHHHTTCEEEEECSBCTT-SSBCHHHHHHHHHH
T ss_pred EEECCchHHHHHHHHHHhcC--CC-CEEEECCCCchhHHHHHHHcCCEEEEEeeeCCC-CCcCHHHHHHHHHH
Confidence 46788999999999876643 55 689999999999999999999999999876543 68898887777654
|
| >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A* | Back alignment and structure |
|---|
Probab=92.90 E-value=0.077 Score=54.43 Aligned_cols=70 Identities=36% Similarity=0.853 Sum_probs=58.8
Q ss_pred eecccchhHHHHHHHHHHhhcCCCeEEecCCCCcCchhhhhhcCCCceeeeeccCCCCcccchhhhHHHHH
Q psy14428 4 VQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIK 74 (583)
Q Consensus 4 ~q~~~~tg~~~~~~~~~~~~~~~~~~~~~~~p~w~n~~~~~~~~~~~~~~y~~~~~~~~~~d~~~~~~~~~ 74 (583)
+-|-|||+|+.++..++...-++ .+|.+++|+|..+...++..|.++..+++.++...++|++.+.+.++
T Consensus 99 ~~t~g~~~a~~~~~~~~~~~~~g-d~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~ 168 (397)
T 3fsl_A 99 IQTLGGSGALKVGADFLKRYFPE-SGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLK 168 (397)
T ss_dssp EEESHHHHHHHHHHHHHHHHCTT-CCEEEESSCCHHHHHHHHHTTCCEEEECCEETTTTEECHHHHHHHHT
T ss_pred EEcCCcHHHHHHHHHHHHhcCCC-CeEEEeCCCchhHHHHHHHcCCceEEEeeeeccCCcCcHHHHHHHHH
Confidence 56789999999997766554455 67999999999999999999999999999777778899888776654
|
| >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* | Back alignment and structure |
|---|
Probab=92.09 E-value=0.13 Score=53.20 Aligned_cols=71 Identities=39% Similarity=0.914 Sum_probs=55.2
Q ss_pred eecccchhHHHHHHHHHHhhcCCC----eEEecCCCCcCchhhhhhcCCCc-eeeeeccCCCCcccchhhhHHHHH
Q psy14428 4 VQGISGSGSLRVGTAFLERFYPGV----KTVYFPTPTWNGHVRFCTDSRLN-VGAYRYFDNKTNGLDFAGMMEDIK 74 (583)
Q Consensus 4 ~q~~~~tg~~~~~~~~~~~~~~~~----~~~~~~~p~w~n~~~~~~~~~~~-~~~y~~~~~~~~~~d~~~~~~~~~ 74 (583)
+||-|||+|+.++..++..+-++. .+|.+++|+|..+...++..|.+ +..++..++...++|++.+.+.++
T Consensus 103 ~~t~gg~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~ 178 (412)
T 1ajs_A 103 VQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLE 178 (412)
T ss_dssp EEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHHHTTCSCEEEEECEETTTTEECHHHHHHHHH
T ss_pred EECCCcHHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHHHHHHHHHcCCceeEEEeeecCCCCccCHHHHHHHHH
Confidence 689999999999987665443441 46999999999999999999999 999987544456678776655443
|
| >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... | Back alignment and structure |
|---|
Probab=92.09 E-value=0.13 Score=52.70 Aligned_cols=69 Identities=30% Similarity=0.637 Sum_probs=55.4
Q ss_pred eecccchhHHHHHHHHHHhhcCCCeEEecCCCCcCchhhhhhcCCCceeeeeccCCCCcccchhhhHHHH
Q psy14428 4 VQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDI 73 (583)
Q Consensus 4 ~q~~~~tg~~~~~~~~~~~~~~~~~~~~~~~p~w~n~~~~~~~~~~~~~~y~~~~~~~~~~d~~~~~~~~ 73 (583)
++|-|||+|+.++...+..+-++ .+|.+++|+|..+...++..|.++..++.......++|++.+.+.+
T Consensus 98 ~~~~g~~~a~~~~~~~~~~~~~g-d~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l 166 (396)
T 2q7w_A 98 AQTPGGTGALRVAADFLAKNTSV-KRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSL 166 (396)
T ss_dssp EEESHHHHHHHHHHHHHHHHSCC-CEEEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHH
T ss_pred EecccchhhHHHHHHHHHHhCCC-CEEEEcCCCchhHHHHHHHcCCceEEEecccCCCCCcCHHHHHHHH
Confidence 36899999999999888765566 6799999999999999999999998888753344567877665544
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=85.13 E-value=0.63 Score=47.56 Aligned_cols=68 Identities=19% Similarity=0.237 Sum_probs=53.9
Q ss_pred eecccchhHHHHHHHHHHhhcCCCeEEecCCCCcCchhhhhhcCCCceeeeec----cCCCCcccchhhhHHHHH
Q psy14428 4 VQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRY----FDNKTNGLDFAGMMEDIK 74 (583)
Q Consensus 4 ~q~~~~tg~~~~~~~~~~~~~~~~~~~~~~~p~w~n~~~~~~~~~~~~~~y~~----~~~~~~~~d~~~~~~~~~ 74 (583)
+-|-|||.|+.++...+.+ ++ .+|.+++|+|..+...++..|.++..+++ +++.+.++|++.+.+.++
T Consensus 106 ~~~~g~~~a~~~~~~~l~~--~g-d~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~ 177 (407)
T 3nra_A 106 IITPGTQGALFLAVAATVA--RG-DKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFK 177 (407)
T ss_dssp EEESHHHHHHHHHHHTTCC--TT-CEEEEEESCCTHHHHHHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHH
T ss_pred EEeCCcHHHHHHHHHHhCC--CC-CEEEEcCCcccchHHHHHHcCCEEEEeecccccccCcCCCcCHHHHHHHHh
Confidence 3466889999988775532 45 68999999999999999999999998887 334667889888776664
|
| >3gh5_A HEX1, beta-hexosaminidase; beta-N-acetylhexosaminidase, glycosphingolipids, paenibacill GH20, hydrolase, structural genomics, NPPSFA; HET: NAG; 1.60A {Paenibacillus SP} PDB: 3gh4_A* 3gh7_A* 3sur_A* 3sus_A* 3sut_A* 3suu_A* 3suv_A* 3suw_A* | Back alignment and structure |
|---|
Probab=80.90 E-value=8.9 Score=40.81 Aligned_cols=118 Identities=9% Similarity=0.128 Sum_probs=74.6
Q ss_pred CCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCC----------C-----EEEEcCCCCh-----------------
Q psy14428 222 EDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGV----------K-----TVYFPTPTWN----------------- 269 (583)
Q Consensus 222 ~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~g----------d-----~Vlv~~P~y~----------------- 269 (583)
.|.+.++++.|.| +.++..++....+.|..+...+ . ..+...|-|+
T Consensus 123 ~Y~L~v~~~~i~I--~a~~~~G~~~glqTL~QLl~~~~~~~~~~~g~~~~lp~~~I~D~Prf~~RG~mLDvsR~f~~~~~ 200 (525)
T 3gh5_A 123 GYDLITTSNQVTL--TANKPEGVFRGNQTLLQLLPAGIEKNTVVSGVQWVIPHSNISDKPEYEYRGLMLDVARHFFTVDE 200 (525)
T ss_dssp CEEEEECSSEEEE--EESSHHHHHHHHHHHHHHSCTTTTCSSCCCSCCCEEEEEEEEECCSCSEEEEEEECSSSCCCHHH
T ss_pred ceEEEEeCCEEEE--EECCHHHHHHHHHHHHHHHhhhccccccccCcceeccceEEeecCCcceeccccCCCCCCCCHHH
Confidence 3456788889999 8887766666666666665432 1 2355567664
Q ss_pred --hhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEE
Q psy14428 270 --GHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPF 347 (583)
Q Consensus 270 --~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI 347 (583)
.+...+..++.++...-+.|...|.+..+...+.-+. ...+ .-..+.|..+|++++++|++.|++++|-||
T Consensus 201 ik~~id~mA~~KlN~lH~HltDdqgwriei~~~P~Lt~~-Ga~~------~~~~~~~g~YT~~di~eIv~YA~~rgI~VI 273 (525)
T 3gh5_A 201 VKRQIDLASQYKINKFHMHLSDDQGWRIEIKSWPDLIEI-GSKG------QVGGGPGGYYTQEQFKDIVSYAAERYIEVI 273 (525)
T ss_dssp HHHHHHHHHTTTCCEEEEECBCSSCBCBCCTTSTHHHHT-TTSC------CTTSSCCCCBCHHHHHHHHHHHHTTTCEEE
T ss_pred HHHHHHHHHHcCCcEEEEEeccCCccccccccchhhhhc-cCcc------ccCCCCCCCcCHHHHHHHHHHHHHcCCEEE
Confidence 2456667778888888886554444444433322211 1110 011234778999999999999999999877
Q ss_pred E
Q psy14428 348 F 348 (583)
Q Consensus 348 ~ 348 (583)
=
T Consensus 274 P 274 (525)
T 3gh5_A 274 P 274 (525)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=80.87 E-value=1.7 Score=44.84 Aligned_cols=68 Identities=13% Similarity=0.253 Sum_probs=52.7
Q ss_pred ceecccchhHHHHHHHHHHhhcCCCeEEecCCCCcCchhhhhhc-CCCceeeeeccCCCCcccchhhhHHHHH
Q psy14428 3 IVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTD-SRLNVGAYRYFDNKTNGLDFAGMMEDIK 74 (583)
Q Consensus 3 ~~q~~~~tg~~~~~~~~~~~~~~~~~~~~~~~p~w~n~~~~~~~-~~~~~~~y~~~~~~~~~~d~~~~~~~~~ 74 (583)
.+-|-|||.|+.++...+.+ ++ .+|.+++|+|..+...++. .|.++..++.-+.. .++|.+.+.+.++
T Consensus 116 i~~t~g~~~al~~~~~~l~~--~g-d~Vl~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~-~~~d~~~l~~~l~ 184 (430)
T 2x5f_A 116 PIVTNALTHGLSLVGDLFVN--QD-DTILLPEHNWGNYKLVFNTRNGANLQTYPIFDKD-GHYTTDSLVEALQ 184 (430)
T ss_dssp CEEESHHHHHHHHHHHHHCC--TT-CEEEEESSCCTHHHHHHTTTTCCEEEEECCBCTT-SCBCSHHHHHHHH
T ss_pred EEEcCCchHHHHHHHHHHhC--CC-CEEEEcCCcCccHHHHHHHhcCCeEEEEeccCcc-CCcCHHHHHHHHH
Confidence 35677889999999887743 55 6899999999999999999 99998888764432 5678776655443
|
| >1jak_A Beta-N-acetylhexosaminidase; glycoside hydrolase, family 20, substrate-assisted catalysis, alpha/beta barrel, isofagomin inhibitor complex; HET: IFG; 1.75A {Streptomyces plicatus} SCOP: c.1.8.6 d.92.2.1 PDB: 1hp4_A* 1hp5_A* 1m01_A* 1m04_A* 1m03_A* | Back alignment and structure |
|---|
Probab=80.39 E-value=7.1 Score=41.54 Aligned_cols=117 Identities=11% Similarity=0.050 Sum_probs=70.5
Q ss_pred CCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCC--------------EEEEcCCCCh-------------------
Q psy14428 223 DFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVK--------------TVYFPTPTWN------------------- 269 (583)
Q Consensus 223 ~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd--------------~Vlv~~P~y~------------------- 269 (583)
+.+.++++.|.| +..+..++.-..+.|..+...+. ..+...|.|+
T Consensus 100 Y~L~v~~~~i~I--~a~~~~G~~~g~qTL~Ql~~~~~~~~~~~~~~~~lp~~~I~D~Prf~~RG~mLD~aR~f~~~~~ik 177 (512)
T 1jak_A 100 YRLDSGPAGVTI--TARKAAGLFHGVQTLRQLLPPAVEKDSAQPGPWLVAGGTIEDTPRYAWRSAMLDVSRHFFGVDEVK 177 (512)
T ss_dssp EEEEEETTEEEE--EESSHHHHHHHHHHHHHHSCGGGGCSSCCCCCCEECCEEEEECCSCSEEEEEEECSSSCCCHHHHH
T ss_pred eEEEEeCCEEEE--EEcCHHHHHHHHHHHHHHhhhhhcccccccCcccccceEEeecCCCCccceeeccCCCCCCHHHHH
Confidence 446677788888 77776666555555555554221 2244556663
Q ss_pred hhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEE
Q psy14428 270 GHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFF 348 (583)
Q Consensus 270 ~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~ 348 (583)
.+...+..++.++..+-+.|...+.+..+...+.-+. .... ....+.|..+|++++++|++.|++++|-||-
T Consensus 178 ~~id~ma~~KlN~lh~HltDdq~wriei~~~P~Lt~~-ga~~------~~~~~~~g~YT~~di~eiv~yA~~rgI~VIP 249 (512)
T 1jak_A 178 RYIDRVARYKYNKLHLHLSDDQGWRIAIDSWPRLATY-GGST------EVGGGPGGYYTKAEYKEIVRYAASRHLEVVP 249 (512)
T ss_dssp HHHHHHHTTTCCEEEEECBCSSCBCBCCTTSTHHHHT-TTSC------CTTSSCCCCBCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCcEEEEEeccCCCceehhhhhHHHHhh-cCcc------ccCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 2445566678888887775554444443333222111 1110 1112347899999999999999999998874
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 583 | ||||
| d1ajsa_ | 412 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig | 5e-71 | |
| d7aata_ | 401 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chi | 9e-67 | |
| d1yaaa_ | 412 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Bak | 7e-62 | |
| d3tata_ | 397 | c.67.1.1 (A:) Aromatic aminoacid aminotransferase, | 2e-61 | |
| d2q7wa1 | 396 | c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT | 8e-60 | |
| d2ay1a_ | 394 | c.67.1.1 (A:) Aromatic aminoacid aminotransferase, | 2e-59 | |
| d1b5pa_ | 382 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {The | 3e-13 | |
| d1j32a_ | 388 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pho | 5e-13 | |
| d1gdea_ | 388 | c.67.1.1 (A:) Aromatic aminoacid aminotransferase, | 1e-12 |
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} Length = 412 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Score = 232 bits (591), Expect = 5e-71
Identities = 157/388 (40%), Positives = 227/388 (58%), Gaps = 48/388 (12%)
Query: 157 FNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYE-KNLDHEYANIGGDAKFCKLA 215
F +DP P+K+NLGVGAYR +D +P+VLP V++ E+RI +L+HEY I G A+F A
Sbjct: 24 FREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFRTCA 83
Query: 216 AQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGV----KTVYFPTPTWNGH 271
++LA G+D PA ++ R+ VQ + G+G+LR+G FL R+Y G VY +PTW H
Sbjct: 84 SRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENH 143
Query: 272 VRFCTDSRLN-VGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSED 330
T + + +YRY+D + GLD G + D++ PE SI L +HNPTG D + +
Sbjct: 144 NGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPE 203
Query: 331 QWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLY 390
QW+Q+A V+K+R L+PFFD AY G SG+ +KDA+++RYF E +L AQSFSKN GLY
Sbjct: 204 QWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLY 263
Query: 391 GERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETE 450
ERVG +V+ + D
Sbjct: 264 NERVGNLTVVAK------------------------------------------EPDSIL 281
Query: 451 RIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKI 510
R++SQ++ ++R +SNPP GARIV LSDP+L +W K M++RI S+R EL++++
Sbjct: 282 RVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARL 341
Query: 511 LDKGSKKNWDHITNQKGMFCYTGLSASQ 538
+ W+HIT+Q GMF +TGL+ Q
Sbjct: 342 EALKTPGTWNHITDQIGMFSFTGLNPKQ 369
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} Length = 401 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Score = 220 bits (561), Expect = 9e-67
Identities = 179/382 (46%), Positives = 240/382 (62%), Gaps = 42/382 (10%)
Query: 157 FNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAA 216
F +D + KKMNLGVGAYR ++GKPYVL V++AE I K +D EY I G A F + +A
Sbjct: 22 FKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASA 81
Query: 217 QLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCT 276
+LA GE+ AFK R VQGISG+GSLRVG FL+RF+ + VY P P+W H
Sbjct: 82 ELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFR 141
Query: 277 DSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLA 336
D+ L + AYRY+D KT LDF G MEDI +PE+SI+ L +HNPTGVD ++QW++LA
Sbjct: 142 DAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELA 201
Query: 337 VVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGT 396
VVK+R+L +FDMAY G SGD ++DA++LR+F ++ + L+QS++KNMGLYGER G
Sbjct: 202 SVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMGLYGERAGA 261
Query: 397 FSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQL 456
F+V+ +E +R+ SQL
Sbjct: 262 FTVICR------------------------------------------DAEEAKRVESQL 279
Query: 457 KILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSK 516
KILIR YSNPP++GARI + IL+ P+L+ +W E KGM++RI S+R +L S + +GS
Sbjct: 280 KILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSS 339
Query: 517 KNWDHITNQKGMFCYTGLSASQ 538
NW HIT+Q GMFC+TGL Q
Sbjct: 340 HNWQHITDQIGMFCFTGLKPEQ 361
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} Length = 412 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Score = 207 bits (528), Expect = 7e-62
Identities = 134/386 (34%), Positives = 205/386 (53%), Gaps = 43/386 (11%)
Query: 157 FNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIY-EKNLDHEYANIGGDAKFCKLA 215
+ +D K++LG+GAYR ++GKP+VLPSVK AE+ I+ + + +HEY I G A
Sbjct: 23 YGQDQRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNA 82
Query: 216 AQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFC 275
A++ +G A +++R+ VQ +SG+G+L + F +F+P K VY PTW H+
Sbjct: 83 AKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFPD-KLVYLSKPTWANHMAIF 141
Query: 276 TDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQL 335
+ L Y Y+ N+T LD G + I+ PE SI L + +HNPTG+D + +QW Q+
Sbjct: 142 ENQGLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQI 201
Query: 336 AVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQ---LCLAQSFSKNMGLYGE 392
+ ++ FD AY G +GD DKDA+++R +++ + + QSF+KN G+YGE
Sbjct: 202 VDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGE 261
Query: 393 RVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERI 452
RVG F L+ K +
Sbjct: 262 RVGCF--------------------------------------HLALTKQAQNKTIKPAV 283
Query: 453 MSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILD 512
SQL +IR SNPP +GA+IV ++L P+L QW ++ MS+RI+ +R L+ ++
Sbjct: 284 TSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVK 343
Query: 513 KGSKKNWDHITNQKGMFCYTGLSASQ 538
G+ NWDHI NQ GMF +TGL+
Sbjct: 344 LGTPGNWDHIVNQCGMFSFTGLTPQM 369
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} Length = 397 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Score = 206 bits (524), Expect = 2e-61
Identities = 135/402 (33%), Positives = 204/402 (50%), Gaps = 50/402 (12%)
Query: 143 MMEDIK-----PLKQQLKGFNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIY-EK 196
M + + P+ ++ F +DP K+NL +G Y EDG L +V EAE R+ +
Sbjct: 1 MFQKVDAYAGDPILTLMERFKEDPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQP 60
Query: 197 NLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYP 256
+ Y + G + A L +G D P K R+A +Q + GSG+L+VG FL+R++P
Sbjct: 61 HGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFP 120
Query: 257 GVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQ 316
V+ PTW HV + V Y ++D TNG+ F ++ +K +P RSI+ L
Sbjct: 121 E-SGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLPARSIVLLH 179
Query: 317 TSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQ 376
HNPTG DL+ DQW + ++K R L PF D+AY G +G ++DA+++R A
Sbjct: 180 PCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGM-EEDAYAIRAIASAGLP 238
Query: 377 LCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEI 436
++ SFSK LYGERVG SV+
Sbjct: 239 ALVSNSFSKIFSLYGERVGGLSVMCE---------------------------------- 264
Query: 437 LSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMS 496
+ R++ QLK +R YS+PP GA++V +L+D LKA W E + M
Sbjct: 265 --------DAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLAEVEEMR 316
Query: 497 NRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSASQ 538
RI ++R+EL + + ++N+D++ NQ+GMF YTGLSA+Q
Sbjct: 317 TRILAMRQELVKVLSTEMPERNFDYLLNQRGMFSYTGLSAAQ 358
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} Length = 396 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Score = 202 bits (513), Expect = 8e-60
Identities = 126/401 (31%), Positives = 185/401 (46%), Gaps = 49/401 (12%)
Query: 143 MMEDIK-----PLKQQLKGFNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKN 197
M E+I P+ F D P K+NLG+G Y+ E GK VL SVK+AE+ + E
Sbjct: 1 MFENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENE 60
Query: 198 LDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPG 257
Y I G +F + +L +G+ D R Q G+G+LRV FL +
Sbjct: 61 TTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTS- 119
Query: 258 VKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQT 317
VK V+ P+W H + L V Y Y+D + + LDF ++ + ++
Sbjct: 120 VKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHG 179
Query: 318 SSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQL 377
HNPTG+D + +QW+ LA + ++ P FD AY G G ++DA LR FA +L
Sbjct: 180 CCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGL-EEDAEGLRAFAAMHKEL 238
Query: 378 CLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEIL 437
+A S+SKN GLY ERV G +
Sbjct: 239 IVASSYSKNFGLYNERV-------------------------GACTLVAAD--------- 264
Query: 438 SDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSN 497
+ +R SQ+K IR YSNPP HGA +V ILS+ L+A W +E M
Sbjct: 265 --------SETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQ 316
Query: 498 RISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSASQ 538
RI +R+ + + +KG+ +++ I Q GMF ++GL+ Q
Sbjct: 317 RIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTKEQ 357
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} Length = 394 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Score = 200 bits (510), Expect = 2e-59
Identities = 111/401 (27%), Positives = 174/401 (43%), Gaps = 52/401 (12%)
Query: 143 MMEDIKPLK-----QQLKGFNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKN 197
M+ ++KP + F DP K++LGVG Y+ G ++ +V AE+R+ E
Sbjct: 1 MLGNLKPQAPDKILALMGEFRADPRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETE 60
Query: 198 LDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPG 257
YA + G+ +F K +L G+ + A + + G+G+LR P
Sbjct: 61 TTKTYAGLSGEPEFQKAMGELILGDGLKSETT---ATLATVGGTGALRQALELARMANP- 116
Query: 258 VKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQT 317
V+ PTW HV L V YRYFD +T G+DF GM D+ A + ++ L
Sbjct: 117 DLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHG 176
Query: 318 SSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQL 377
HNPTG +L+ DQW ++A ++++ P D+AY G G + DA R A + ++
Sbjct: 177 CCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEE-DAAGTRLIASRIPEV 235
Query: 378 CLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEIL 437
+A S SKN G+Y ER G L
Sbjct: 236 LIAASCSKNFGIYRERTGCLLALCA----------------------------------- 260
Query: 438 SDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSN 497
E + L R YS PP HGA+IV+ +L+ P+L+A W E + + +
Sbjct: 261 -------DAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRS 313
Query: 498 RISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSASQ 538
+ +RE+L ++ D + + +GMF G + Q
Sbjct: 314 GMLRLREQLAGELRDLSGSDRFGFVAEHRGMFSRLGATPEQ 354
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} Length = 382 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Score = 69.4 bits (169), Expect = 3e-13
Identities = 43/212 (20%), Positives = 72/212 (33%), Gaps = 14/212 (6%)
Query: 184 PSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGS 243
VKEA RR + +YA G + + A+ E+ + + G S +
Sbjct: 47 EHVKEAARRALAQGK-TKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALF 105
Query: 244 LRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMED 303
+ A L+ PG V +P W + + V + D +
Sbjct: 106 N-LFQAILD---PG-DEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRA 160
Query: 304 IKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKD 363
I R+ + S +NPTG ++ LA + + Y D Y L ++ +
Sbjct: 161 IT---PRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLL---YEGE 214
Query: 364 AFSLRYFAKEVGQLCLAQSFSKNMGLYGERVG 395
FS A E +K + G R+G
Sbjct: 215 HFSPGRVAPEHTLTV--NGAAKAFAMTGWRIG 244
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} Length = 388 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Score = 68.7 bits (167), Expect = 5e-13
Identities = 37/212 (17%), Positives = 72/212 (33%), Gaps = 10/212 (4%)
Query: 184 PSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGS 243
+ EA + E+ Y G+ + + AQ ++ + + + + G S
Sbjct: 46 KHIVEAAKAALEQG-KTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIF 104
Query: 244 LRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMED 303
+ A +E PG V P P W + + + + +
Sbjct: 105 N-LMLAMIE---PG-DEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQA 159
Query: 304 IKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKD 363
I ++ L + + NPTG+ + D+ R +A V + L+ D Y D +
Sbjct: 160 IT---PKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIY-EKILYDDAQH 215
Query: 364 AFSLRYFAKEVGQLCLAQSFSKNMGLYGERVG 395
+ + + F+K + G RVG
Sbjct: 216 LSIGAASPEAYERSVVCSGFAKTYAMTGWRVG 247
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 388 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 67.2 bits (163), Expect = 1e-12
Identities = 39/213 (18%), Positives = 77/213 (36%), Gaps = 12/213 (5%)
Query: 184 PSVKEAERRIYEKNLDHEYANIGGDAKFCK-LAAQLAYGEDFPAFKDNRLAIVQGISGSG 242
+KE + +K L Y G + + +A +L A + ++ G + +
Sbjct: 41 QHIKEYAKEALDKGL-THYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAF 99
Query: 243 SLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMME 302
+ +AFL+ G + V PTP + + + ++ L+ +
Sbjct: 100 LM-GLSAFLK---DG-EEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDEL-- 152
Query: 303 DIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDK 362
K + +++ + S NPTG L++ ++A V + L D Y D
Sbjct: 153 -KKYVTDKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFI--YDDA 209
Query: 363 DAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVG 395
+S+ + FSK + G R+G
Sbjct: 210 RHYSIASLDGMFERTITVNGFSKTFAMTGWRLG 242
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 583 | |||
| d7aata_ | 401 | Aspartate aminotransferase, AAT {Chicken (Gallus g | 100.0 | |
| d2q7wa1 | 396 | Aspartate aminotransferase, AAT {Escherichia coli | 100.0 | |
| d1yaaa_ | 412 | Aspartate aminotransferase, AAT {Baker's yeast (Sa | 100.0 | |
| d1ajsa_ | 412 | Aspartate aminotransferase, AAT {Pig (Sus scrofa), | 100.0 | |
| d3tata_ | 397 | Aromatic aminoacid aminotransferase, AroAT {Escher | 100.0 | |
| d2ay1a_ | 394 | Aromatic aminoacid aminotransferase, AroAT {Paraco | 100.0 | |
| d1b5pa_ | 382 | Aspartate aminotransferase, AAT {Thermus thermophi | 100.0 | |
| d1j32a_ | 388 | Aspartate aminotransferase, AAT {Phormidium lapide | 100.0 | |
| d1gdea_ | 388 | Aromatic aminoacid aminotransferase, AroAT {Archae | 100.0 | |
| d1xi9a_ | 395 | Putative alanine aminotransferase {Pyrococcus furi | 100.0 | |
| d2r5ea1 | 418 | Kynurenine--oxoglutarate transaminase I {Yellowfev | 100.0 | |
| d1wsta1 | 403 | Multiple substrate aminotransferase, MSAT {Thermoc | 100.0 | |
| d1vp4a_ | 420 | Putative aminotransferase TM1131 {Thermotoga marit | 100.0 | |
| d1w7la_ | 418 | Kynurenine--oxoglutarate transaminase I {Human (Ho | 100.0 | |
| d1u08a_ | 382 | Putative methionine aminotransferase YdbL {Escheri | 100.0 | |
| d1o4sa_ | 375 | Aspartate aminotransferase, AAT {Thermotoga mariti | 100.0 | |
| d1bw0a_ | 412 | Tyrosine aminotransferase (TAT) {Trypanosoma cruzi | 100.0 | |
| d1c7na_ | 394 | Cystalysin {Treponema denticola [TaxId: 158]} | 100.0 | |
| d2gb3a1 | 389 | AAT homologue TM1698 {Thermotoga maritima [TaxId: | 100.0 | |
| d1iaya_ | 428 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 100.0 | |
| d1m7ya_ | 431 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 100.0 | |
| d1d2fa_ | 361 | Modulator in mal gene expression, MalY {Escherichi | 100.0 | |
| d1v2da_ | 368 | Glutamine aminotransferase {Thermus thermophilus [ | 100.0 | |
| d2f8ja1 | 334 | Histidinol-phosphate aminotransferase HisC {Thermo | 100.0 | |
| d1lc5a_ | 355 | L-threonine-O-3-phosphate decarboxylase CobD {Salm | 100.0 | |
| d1fg7a_ | 354 | Histidinol-phosphate aminotransferase HisC {Escher | 100.0 | |
| d2hoxa1 | 425 | Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | 99.95 | |
| d2aeua1 | 366 | Hypothetical protein MJ0158 {Archaeon Methanococcu | 99.86 | |
| d2e7ja1 | 364 | Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl | 99.81 | |
| d1p3wa_ | 391 | Cysteine desulfurase IscS {Escherichia coli [TaxId | 99.59 | |
| d1m6sa_ | 343 | Low-specificity threonine aldolase {Thermotoga mar | 99.52 | |
| d1elua_ | 381 | Cystine C-S lyase C-des {Synechocystis sp. [TaxId: | 99.49 | |
| d1bs0a_ | 383 | PLP-dependent acyl-CoA synthase (8-amino-7-oxonano | 99.48 | |
| d1fc4a_ | 401 | 2-amino-3-ketobutyrate CoA ligase {Escherichia col | 99.39 | |
| d1eg5a_ | 376 | NifS-like protein/selenocysteine lyase {Thermotoga | 99.39 | |
| d1mdoa_ | 376 | Aminotransferase ArnB {Salmonella typhimurium [Tax | 99.36 | |
| d2bwna1 | 396 | 5-aminolevulinate synthase {Rhodobacter capsulatus | 99.36 | |
| d1y4ia1 | 397 | Methionine gamma-lyase, MGL {Citrobacter freundii | 99.34 | |
| d1gc0a_ | 392 | Methionine gamma-lyase, MGL {Pseudomonas putida [T | 99.32 | |
| d1ibja_ | 380 | Cystathionine beta-lyase, CBL {Thale cress (Arabid | 99.29 | |
| d1c7ga_ | 456 | Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5 | 99.27 | |
| d1b9ha_ | 384 | 3-amino-5-hydroxybenzoic acid synthase (AHBA synth | 99.27 | |
| d1svva_ | 340 | Low-specificity threonine aldolase {Leishmania maj | 99.27 | |
| d1cs1a_ | 384 | Cystathionine gamma-synthase, CGS {Escherichia col | 99.26 | |
| d3bc8a1 | 445 | Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu | 99.25 | |
| d1qgna_ | 398 | Cystathionine gamma-synthase, CGS {Common tobacco | 99.25 | |
| d1ax4a_ | 465 | Tryptophan indol-lyase (tryptophanase) {Proteus vu | 99.22 | |
| d1jf9a_ | 405 | NifS-like protein/selenocysteine lyase {Escherichi | 99.19 | |
| d1cl1a_ | 391 | Cystathionine beta-lyase, CBL {Escherichia coli [T | 99.12 | |
| d2ctza1 | 421 | O-acetyl-L-homoserine sulfhydrylase {Thermus therm | 99.11 | |
| d1v72a1 | 345 | Phenylserine aldolase PSALD {Pseudomonas putida [T | 99.1 | |
| d1pffa_ | 331 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.09 | |
| d2z67a1 | 434 | Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco | 99.09 | |
| d1e5ea_ | 394 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.01 | |
| d1n8pa_ | 393 | Cystathionine gamma-lyase (CYS3) {Baker's yeast (S | 98.96 | |
| d1o69a_ | 374 | Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam | 98.93 | |
| d2fnua1 | 371 | Spore coat polysaccharide biosynthesis protein C { | 98.87 | |
| d2v1pa1 | 467 | Tryptophan indol-lyase (tryptophanase) {Escherichi | 98.77 | |
| d1t3ia_ | 408 | Probable cysteine desulfurase SufS {Synechocystis | 98.77 | |
| d2gsaa_ | 427 | Glutamate-1-semialdehyde aminomutase (aminotransfe | 98.72 | |
| d1qz9a_ | 404 | Kynureninase {Pseudomonas fluorescens [TaxId: 294] | 98.59 | |
| d1vefa1 | 387 | Acetylornithine/acetyl-lysine aminotransferase Arg | 98.58 | |
| d1pmma_ | 450 | Glutamate decarboxylase beta, GadB {Escherichia co | 98.55 | |
| d2byla1 | 404 | Ornithine aminotransferase {Human (Homo sapiens) [ | 98.48 | |
| d2bkwa1 | 382 | Alanine-glyoxylate aminotransferase {Baker's yeast | 98.41 | |
| d1zoda1 | 431 | Dialkylglycine decarboxylase {Pseudomonas cepacia | 98.4 | |
| d1m32a_ | 361 | 2-aminoethylphosphonate transaminase {Salmonella t | 98.39 | |
| d1c4ka2 | 462 | Ornithine decarboxylase major domain {Lactobacillu | 98.32 | |
| d1h0ca_ | 388 | Alanine-glyoxylate aminotransferase {Human (Homo s | 98.3 | |
| d1sffa_ | 425 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 98.28 | |
| d1kl1a_ | 405 | Serine hydroxymethyltransferase {Bacillus stearoth | 98.18 | |
| d1s0aa_ | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 98.15 | |
| d1z7da1 | 404 | Ornithine aminotransferase {Plasmodium yoelii yoel | 98.11 | |
| d1vjoa_ | 377 | Alanine-glyoxylate aminotransferase {Cyanobacteria | 98.11 | |
| d1dfoa_ | 416 | Serine hydroxymethyltransferase {Escherichia coli | 98.1 | |
| d1js3a_ | 476 | DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823] | 98.09 | |
| d1iuga_ | 348 | Subgroup IV putative aspartate aminotransferase {T | 97.96 | |
| d2ay1a_ | 394 | Aromatic aminoacid aminotransferase, AroAT {Paraco | 97.84 | |
| d3tata_ | 397 | Aromatic aminoacid aminotransferase, AroAT {Escher | 97.8 | |
| d2ch1a1 | 388 | 3-hydroxykynurenine transaminase {Malaria mosquito | 97.74 | |
| d2a7va1 | 463 | Serine hydroxymethyltransferase {Human (Homo sapie | 97.66 | |
| d1rv3a_ | 470 | Serine hydroxymethyltransferase {Rabbit (Oryctolag | 97.64 | |
| d1ohwa_ | 461 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 97.59 | |
| d1ajsa_ | 412 | Aspartate aminotransferase, AAT {Pig (Sus scrofa), | 97.56 | |
| d2q7wa1 | 396 | Aspartate aminotransferase, AAT {Escherichia coli | 97.55 | |
| d7aata_ | 401 | Aspartate aminotransferase, AAT {Chicken (Gallus g | 97.51 | |
| d1yaaa_ | 412 | Aspartate aminotransferase, AAT {Baker's yeast (Sa | 96.96 | |
| d2c0ra1 | 361 | Phosphoserine aminotransferase, PSAT {Bacillus cir | 96.89 | |
| d1bjna_ | 360 | Phosphoserine aminotransferase, PSAT {Escherichia | 96.43 | |
| d1w23a_ | 360 | Phosphoserine aminotransferase, PSAT {Bacillus alc | 95.85 | |
| d1wyua1 | 437 | Glycine dehydrogenase (decarboxylating) subunit 1 | 95.36 | |
| d1m7ya_ | 431 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 90.96 | |
| d1wyub1 | 471 | Glycine dehydrogenase subunit 2 (P-protein) {Therm | 86.84 | |
| d1d2fa_ | 361 | Modulator in mal gene expression, MalY {Escherichi | 85.57 | |
| d1gdea_ | 388 | Aromatic aminoacid aminotransferase, AroAT {Archae | 80.74 |
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Probab=100.00 E-value=1.3e-52 Score=443.26 Aligned_cols=377 Identities=49% Similarity=0.871 Sum_probs=308.0
Q ss_pred ccchhhHhhccccccCCCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCC
Q psy14428 145 EDIKPLKQQLKGFNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDF 224 (583)
Q Consensus 145 ~~~~~i~~l~~~~~~~~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g 224 (583)
.|+++++.+.+.++++.++++|||++|.+.++.+.+++++.|+++..++..++..++|+|..|.++||++|++++.++++
T Consensus 10 ~p~d~i~~~~~~~~~d~~~~~InL~iG~~~d~~~~~~~~~~V~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~ 89 (401)
T d7aata_ 10 GPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASAELALGENS 89 (401)
T ss_dssp CCCCHHHHHHHHHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHCTTC
T ss_pred CCCChHHHHHHHHhCCCCCCcEEccCCCCcCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhccCC
Confidence 57889999988888888999999999998777787778899999999988776667899999999999999999999999
Q ss_pred CCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHH
Q psy14428 225 PAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDI 304 (583)
Q Consensus 225 ~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l 304 (583)
..+.+++|++.++.++++++..+..++..+++|||+|++++|+|+.|..+++.+|++++.+|+.+++++.++++.+.+.+
T Consensus 90 ~~~~~~~i~~~~~~~~~g~~~~~~~~~~~l~~pGd~Vlv~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (401)
T d7aata_ 90 EAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDI 169 (401)
T ss_dssp HHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHH
T ss_pred cccCcCceEEeccchHHHHHHHHHHhhHhhcCCCceEEEecCCCcchhhHHHHcCCeEEEEeccccccccccHHHHHHHH
Confidence 99999999996677777777777667788889999999999999999999999999999999966666778899998888
Q ss_pred HcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCc
Q psy14428 305 KAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFS 384 (583)
Q Consensus 305 ~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~S 384 (583)
....++++++++||||||||.++|.+++++|+++|++|+++||+||+|.+|.|++..........+.+..++++++.|+|
T Consensus 170 ~~~~~~~~~iii~~p~NPTG~~~s~e~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~s 249 (401)
T d7aata_ 170 SKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYA 249 (401)
T ss_dssp TTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECT
T ss_pred hcCCCceEEEEecCCCCCccccCCHHHHHHHHHHHhcceEEEEEeccchhhhcCCcccchhhhhhhhhhhcccceeEecc
Confidence 77778899999999999999999999999999999999999999999999999862111222333345567899999999
Q ss_pred ccccccCccceEEEEEcCCch--hHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhh
Q psy14428 385 KNMGLYGERVGTFSVLTPTSD--ETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRG 462 (583)
Q Consensus 385 K~~~l~GlRiG~lv~~~p~~~--~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~ 462 (583)
|.++++|+|+||+++ +... ....+...+....+..+.+++.+.|.+++.++.+
T Consensus 250 k~~~~~G~RiG~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~----------------------- 304 (401)
T d7aata_ 250 KNMGLYGERAGAFTV--ICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNT----------------------- 304 (401)
T ss_dssp TTSCCGGGCEEEEEE--ECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHC-----------------------
T ss_pred ccceeeccccceeec--chHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHhcCC-----------------------
Confidence 999999999999999 5321 0111222222233445566666767666666655
Q ss_pred ccCCCccchhhHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCChhhhhhh
Q psy14428 463 FYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSASQGMSN 542 (583)
Q Consensus 463 ~~~~~p~~g~~i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~~~~~~~ 542 (583)
+.+..+|.+++++++++|..+|+.+.+.|++.+.++.|.+..+++|||+|..++.+..++
T Consensus 305 -------------------~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~ls~e~~~~- 364 (401)
T d7aata_ 305 -------------------PELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLKPEQVER- 364 (401)
T ss_dssp -------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHCCSSEEECCCCHHHHHH-
T ss_pred -------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceECCCCeEEEecCCCHHHHHH-
Confidence 344556777889999999999999999999998888898899999999999998876544
Q ss_pred hhhhhHHHHHHHHhhcCCCccccccccCCcceeecCCCCCC
Q psy14428 543 RISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSASQ 583 (583)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (583)
|.++.++++. +.+++||+++++++
T Consensus 365 ----L~~e~gV~~~-------------pg~Ris~a~~~~~~ 388 (401)
T d7aata_ 365 ----LTKEFSIYMT-------------KDGRISVAGVASSN 388 (401)
T ss_dssp ----HHHHHCEECC-------------TTCEEEGGGCCTTT
T ss_pred ----HHHhCCEEEC-------------CCcEEEeccCCHHH
Confidence 4444433332 22589999988874
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.9e-49 Score=418.15 Aligned_cols=370 Identities=34% Similarity=0.610 Sum_probs=284.7
Q ss_pred ccchhhHhhccccccCCCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCC
Q psy14428 145 EDIKPLKQQLKGFNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDF 224 (583)
Q Consensus 145 ~~~~~i~~l~~~~~~~~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g 224 (583)
.|+++++.+.+.++++.++++|||++|.+.++.+.+++++.|+++..++.+++..++|+|..|.++||+++++|+.++++
T Consensus 8 ~p~d~i~~~~~~~~~d~~~~kInL~iG~~~d~~g~~p~~~~V~~A~~~~~~~~~~~~Y~p~~G~~~lR~aia~~~~~~~~ 87 (396)
T d2q7wa1 8 APADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQELLFGKGS 87 (396)
T ss_dssp CCC-----------------CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCTTCCHHHHHHHHHHHHCTTC
T ss_pred CCCChHHHHHHHHhccCCCCcEEeeCCCccCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCcCCHHHHHHHHHHHHhhcC
Confidence 46778888888887778899999999988777787878899999999888776677899999999999999999999999
Q ss_pred CCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHH
Q psy14428 225 PAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDI 304 (583)
Q Consensus 225 ~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l 304 (583)
..+.++.+.++.|.|+.+++.+...++..+ .+||.|++|+|+|+.|..+++.+|++++.+|+.+++++..++..+++..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~gd~Vlvp~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (396)
T d2q7wa1 88 ALINDKRARTAQTPGGTGALRVAADFLAKN-TSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSL 166 (396)
T ss_dssp HHHHTTCEEEEEESHHHHHHHHHHHHHHHH-SCCCEEEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHH
T ss_pred CcccccceeeeccchHHHHHHHHHHHHhhc-ccceEEEEecCCCccchHHHHHcCCeeEecccccccccccccchHHHHH
Confidence 888888887767888888887764444334 4599999999999999999999999999999965555556788888877
Q ss_pred HcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCc
Q psy14428 305 KAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFS 384 (583)
Q Consensus 305 ~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~S 384 (583)
.+..++++++++||||||||.++|.+++++|+++|++|+++||+||+|.+|.|++. ....+.....+..++++++.|+|
T Consensus 167 ~~~~~~~~~i~~~~P~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~-~~~~~~~~~~~~~~~~~~~~s~s 245 (396)
T d2q7wa1 167 NEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLE-EDAEGLRAFAAMHKELIVASSYS 245 (396)
T ss_dssp TTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHH-HHTHHHHHHHHHCSCEEEEEECT
T ss_pred HHhccCcEEEEecCCcCCcCeecCHHHHHHHHHHHhcCCeEEEEeccccccccCCc-cCchHhhhhhhhccccccccccc
Confidence 77788899999999999999999999999999999999999999999999999852 12233444455678999999999
Q ss_pred ccccccCccceEEEEEcCCchhHHHHHHHHHH-------HHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHH
Q psy14428 385 KNMGLYGERVGTFSVLTPTSDETERIMSQLKI-------LIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLK 457 (583)
Q Consensus 385 K~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~-------~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~ 457 (583)
|.++++|+|+||+++ ++. +++.+.+ ..+..+.+++...|.++..++.+
T Consensus 246 k~~~~~G~R~G~~~~--~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~------------------ 300 (396)
T d2q7wa1 246 KNFGLYNERVGACTL--VAA-----DSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSN------------------ 300 (396)
T ss_dssp TTTTCGGGCCEEEEE--ECS-----SHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTS------------------
T ss_pred ccccccCCCcccccc--chh-----HHHHHHHhhhhhhhhhhccccCCCHHHHHHHHHHhcC------------------
Confidence 999999999999999 642 2332222 22344455555555555555544
Q ss_pred HHHhhccCCCccchhhHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCChh
Q psy14428 458 ILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSAS 537 (583)
Q Consensus 458 ~~~r~~~~~~p~~g~~i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~~ 537 (583)
+.....|.+++++++++++++|+.+.+.|++.+.++.|.+..+++|||+|..++.+
T Consensus 301 ------------------------~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~l~~e 356 (396)
T d2q7wa1 301 ------------------------DALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTKE 356 (396)
T ss_dssp ------------------------HHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCCSCCTHHHHCCSSEEECCCCHH
T ss_pred ------------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceecCCCeEEEeeCCCHH
Confidence 44556788889999999999999999999999988889989999999999999987
Q ss_pred hhhhhhhhhhHHHHHHHHhhcCCCccccccccCCcceeecCCCCCC
Q psy14428 538 QGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSASQ 583 (583)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (583)
+.++ |.++.+++++ +.|+|||+++++++
T Consensus 357 ~~~~-----L~~e~gV~~~-------------~g~Ri~~a~l~~~~ 384 (396)
T d2q7wa1 357 QVLR-----LREEFGVYAV-------------ASGRVNVAGMTPDN 384 (396)
T ss_dssp HHHH-----HHHHHCEECC-------------TTCEEEGGGCCTTT
T ss_pred HHHH-----HHHhCCEEEC-------------CCCEEEecCCCHHH
Confidence 6544 4455443332 23589999988764
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Probab=100.00 E-value=1.5e-49 Score=421.19 Aligned_cols=381 Identities=36% Similarity=0.664 Sum_probs=306.4
Q ss_pred ccchhhHhhccccccCCCCCccccCCccccCCCCCCCCChHHHHHHHHHhcc-CCCCCCCCCCCCHHHHHHHHHHHhCCC
Q psy14428 145 EDIKPLKQQLKGFNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEK-NLDHEYANIGGDAKFCKLAAQLAYGED 223 (583)
Q Consensus 145 ~~~~~i~~l~~~~~~~~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~-~~~~~Y~~~~G~~~Lr~aia~~~~~~~ 223 (583)
.++++++.+.+.++++.++++|||++|.+.++.+.+++++.|+++.+.+..+ ...++|+|..|.++||+++++++.+++
T Consensus 11 ~~~d~i~~~~~~~~~d~~~~kInL~iG~~~d~~g~~~~~~~V~~A~~~l~~~~~~~~~Y~p~~G~~~lr~aia~~~~~~~ 90 (412)
T d1yaaa_ 11 LPPDALFGIKQRYGQDQRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNAAKIIFGTQ 90 (412)
T ss_dssp CCCCTTHHHHHHHHTCCCSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTT
T ss_pred CCCChHHHHHHHHhcCCCCCcEEeecCCCcCCCCCCCCcHHHHHHHHHHHhCcccCCCCCCCCCCHHHHHHHHHHHhccc
Confidence 3577899998888888899999999998777778888889999998777654 346789999999999999999999998
Q ss_pred CCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHH
Q psy14428 224 FPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMED 303 (583)
Q Consensus 224 g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~ 303 (583)
+..+.++.++++++.|+.+++.++..++ ....+||.|++++|+|+.|...++..|++++.+|+.+++++..+.+.+++.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~gd~Vlip~P~~~~y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 169 (412)
T d1yaaa_ 91 SDALQEDRVISVQSLSGTGALHISAKFF-SKFFPDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLDLNGFLNA 169 (412)
T ss_dssp CHHHHTTCEEEEEEEHHHHHHHHHHHHH-HHHCTTCCEEEEESCCTTHHHHHHTTTCCEEEEECEETTTTEECHHHHHHH
T ss_pred CccccccceeEEecccchhHHHHHHHHH-hccCCCCEEecccccCchhHHHHHHcCCceecccccccccccccchhhhcc
Confidence 8888888888766677777766654333 334569999999999999999999999999999986666677888888888
Q ss_pred HHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHH---HHHHhcCcEEEE
Q psy14428 304 IKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLR---YFAKEVGQLCLA 380 (583)
Q Consensus 304 l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~---~~~~~~~~vi~i 380 (583)
+...+++++++++|+||||||.++|++++++|+++|++++++||+||+|.+|.|++......... ...+..+++|++
T Consensus 170 ~~~~~~~~~~i~i~~P~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 249 (412)
T d1yaaa_ 170 IQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVC 249 (412)
T ss_dssp HHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEE
T ss_pred cccCCCceEEEEecCCCCCccccCCHHHHHHHHhhhccCCEEEeecceeeecccCCcccchhhhhhhhhccccCCCeEEE
Confidence 88778889999999999999999999999999999999999999999999999986211111111 122456789999
Q ss_pred ecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHH
Q psy14428 381 QSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILI 460 (583)
Q Consensus 381 ~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 460 (583)
.||||.|+++|+|+||+++ +++ +++.+.+. ......+.....
T Consensus 250 ~s~SK~~~~~G~RiG~~~~--~~~-----~~~~~~~~-------------------------------~~~~~~~~~~~~ 291 (412)
T d1yaaa_ 250 QSFAKNAGMYGERVGCFHL--ALT-----KQAQNKTI-------------------------------KPAVTSQLAKII 291 (412)
T ss_dssp EECTTTSCCGGGCEEEEEE--ECC-----SCTTHHHH-------------------------------HHHHHHHHHHHH
T ss_pred EecCCccccCcCceEEEEE--chh-----hhhhHHHH-------------------------------HHHHHHHHHHHH
Confidence 9999999999999999999 532 22222211 111122233344
Q ss_pred hhccCCCccchhhHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCChhhhh
Q psy14428 461 RGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSASQGM 540 (583)
Q Consensus 461 r~~~~~~p~~g~~i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~~~~~ 540 (583)
+..+.++|..+..+...++.++....+|.++++.++++|.++|+.+.+.|++.+.++.|.+..+++|||+|+.+++++.+
T Consensus 292 ~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~~~~~~gG~F~~~~ls~e~~~ 371 (412)
T d1yaaa_ 292 RSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGLTPQMVK 371 (412)
T ss_dssp HTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCTHHHHCCSSEEECCCCHHHHH
T ss_pred HHHhcCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCceeCCCceEEEecCcCHHHHH
Confidence 55677788888888888899999999999999999999999999999999999988889999999999999999987655
Q ss_pred hhhhhhhHHHHHHHHhhcCCCccccccccCCcceeecCCCCC
Q psy14428 541 SNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSAS 582 (583)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (583)
+ |+++.++++. +.++|+|++++++
T Consensus 372 ~-----L~~e~~V~~~-------------~g~Ris~~g~~~~ 395 (412)
T d1yaaa_ 372 R-----LEETHAVYLV-------------ASGRASIAGLNQG 395 (412)
T ss_dssp H-----HHHHHCEECC-------------TTSEEEGGGCCTT
T ss_pred H-----HHHhCCEEEC-------------CCCEEEeccCCHH
Confidence 4 4455433222 2258888888876
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Probab=100.00 E-value=1.7e-49 Score=420.78 Aligned_cols=378 Identities=42% Similarity=0.738 Sum_probs=299.0
Q ss_pred cchhhHhhccccccCCCCCccccCCccccCCCCCCCCChHHHHHHHHHhcc-CCCCCCCCCCCCHHHHHHHHHHHhCCCC
Q psy14428 146 DIKPLKQQLKGFNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEK-NLDHEYANIGGDAKFCKLAAQLAYGEDF 224 (583)
Q Consensus 146 ~~~~i~~l~~~~~~~~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~-~~~~~Y~~~~G~~~Lr~aia~~~~~~~g 224 (583)
++++++.+...++++.++++|||++|.+.++.+.+++++.|+++...+..+ ...++|+|..|.++||+++++++.+.++
T Consensus 13 ~~~~i~~l~~~~~~d~~~~~Inl~iG~~~d~~g~~~~~~~V~~a~~~~~~~~~~~~~Y~p~~G~p~lreaia~~~~~~~~ 92 (412)
T d1ajsa_ 13 QPVLVFKLIADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFRTCASRLALGDDS 92 (412)
T ss_dssp CCCHHHHHHHHHHTCCCTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTC
T ss_pred CCChHHHHHHHHhcCCCCCcEEeeCCCCcCCCCCCCCcHHHHHHHHHHHhCCCcCCCCCCCCCCHHHHHHHHHHHhccCC
Confidence 477899999988888899999999998777778887889999998877655 3456899999999999999999999999
Q ss_pred CCCCCCCeEEEecCCchhHHHHHHHHHHH----hCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEe-cccCCCCCCChhh
Q psy14428 225 PAFKDNRLAIVQGISGSGSLRVGTAFLER----FYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYR-YFDNKTNGLDFAG 299 (583)
Q Consensus 225 ~~~~~~~I~i~~t~G~~~al~l~~~~l~~----~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~-~~d~~~~g~d~~~ 299 (583)
..+.++++.+++|+|+++++..+..++.. +.+|||+|++++|+|+.|..+++.+|++++.++ ..+++.+..|++.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pGd~Vlv~~P~y~~y~~~~~~~G~~~v~~~~~~~~~~~~~d~~~ 172 (412)
T d1ajsa_ 93 PALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQG 172 (412)
T ss_dssp HHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHHHTTCSCEEEEECEETTTTEECHHH
T ss_pred cccccccceeecccchhhHHHHHHHHHHHHhhhcCCCCCEEEEeCCcchhhHHHHHHcCCeEEEeecccccccccccHHH
Confidence 99999999988888888888776544433 357899999999999999999999999876654 4344456788888
Q ss_pred HHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEE
Q psy14428 300 MMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCL 379 (583)
Q Consensus 300 l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~ 379 (583)
+++.+....++++++++||||||||.++|++++++|+++|++|+++||+||+|.+|.|++......+.....+..+++++
T Consensus 173 ~~~~~~~~~~~~~~il~~~P~NPTG~v~s~e~~~~i~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~ 252 (412)
T d1ajsa_ 173 FLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFC 252 (412)
T ss_dssp HHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEE
T ss_pred HHHHHHhccCCcEEEEecCCCCCcCCCCCHHHHHHHHHHHhhCCEEEEecHhhhhhhcCCcccchhhhhhhhhhcccccc
Confidence 88888777889999999999999999999999999999999999999999999999998632122233344456788999
Q ss_pred EecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHH
Q psy14428 380 AQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKIL 459 (583)
Q Consensus 380 i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~ 459 (583)
+.|+||+++++|+|+||+++.....+..+.+...+.......+.+++.+.|.++..++.+
T Consensus 253 ~~s~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------- 312 (412)
T d1ajsa_ 253 AQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSD-------------------- 312 (412)
T ss_dssp EEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHS--------------------
T ss_pred cccccccccCCCCCccccccchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhcC--------------------
Confidence 999999999999999999992221111112223333334445555566666555555544
Q ss_pred HhhccCCCccchhhHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCChhhh
Q psy14428 460 IRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSASQG 539 (583)
Q Consensus 460 ~r~~~~~~p~~g~~i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~~~~ 539 (583)
+.....|.++++.++++|.++|+.+.+.|++.+.+|.|.++.+++|||+|+.+++++.
T Consensus 313 ----------------------~~~~~~~~~~~~~~~~~l~~~r~~l~~~L~~~~~~~~~~~i~~~~G~F~~~~ls~~~v 370 (412)
T d1ajsa_ 313 ----------------------PELFHEWTGNVKTMADRILSMRSELRARLEALKTPGTWNHITDQIGMFSFTGLNPKQV 370 (412)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHCCSSEEECCCCHHHH
T ss_pred ----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeeeecCCCeEEEecCCCHHHH
Confidence 4455677888999999999999999999999998888998999999999999988765
Q ss_pred hhhhhhhhHHHHHHHHhhcCCCccccccccCCcceeecCCCCCC
Q psy14428 540 MSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSASQ 583 (583)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (583)
++ +.++.++++. +.|++||+++++++
T Consensus 371 ~~-----L~~e~gV~~v-------------pg~Ri~~ag~~~~~ 396 (412)
T d1ajsa_ 371 EY-----LINQKHIYLL-------------PSGRINMCGLTTKN 396 (412)
T ss_dssp HH-----HHHTTCEECC-------------TTSEEEGGGCCTTT
T ss_pred HH-----HHHhCCEEEe-------------CCCeEEeccCCHHH
Confidence 44 3333332222 23588999888763
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.6e-50 Score=425.00 Aligned_cols=375 Identities=36% Similarity=0.620 Sum_probs=293.9
Q ss_pred cchhhHhhccccccCCCCCccccCCccccCCCCCCCCChHHHHHHHHHhcc-CCCCCCCCCCCCHHHHHHHHHHHhCCCC
Q psy14428 146 DIKPLKQQLKGFNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEK-NLDHEYANIGGDAKFCKLAAQLAYGEDF 224 (583)
Q Consensus 146 ~~~~i~~l~~~~~~~~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~-~~~~~Y~~~~G~~~Lr~aia~~~~~~~g 224 (583)
+.++|+.+...++++.++++|||++|.+.++.+.++.++.+++|...+..+ ...++|+|..|+++||+++|+|+.++++
T Consensus 9 ~~dpi~~~~~~~~~d~~~~kInL~iG~~~d~~g~~p~~~~V~~A~~~l~~~~~~~~~Y~p~~G~~~lR~aia~~~~~~~~ 88 (397)
T d3tata_ 9 AGDPILTLMERFKEDPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADH 88 (397)
T ss_dssp CCCTTTTHHHHHHHSCCSSCEECSCCSCCCTTSSCCCCHHHHHHHHHHTTSCCSSBCCCCTTCCHHHHHHHHHHHTCSSC
T ss_pred CCCcHHHHHHHHhcCCCCCcEEccCCCCcCCCCCCCCcHHHHHHHHHHHhCcccCCCCCCcccCHHHHHHHHHHHhhccC
Confidence 467888888888878889999999999877777777789999998877654 3467799999999999999999999999
Q ss_pred CCCCCCCeEEEecCCchhHHHHH-HHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHH
Q psy14428 225 PAFKDNRLAIVQGISGSGSLRVG-TAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMED 303 (583)
Q Consensus 225 ~~~~~~~I~i~~t~G~~~al~l~-~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~ 303 (583)
..+++++|++ +.|++++...+ ..++..+..|||+|++++|+|+.|..+++.+|++++.+|+.++..+..|.+.+.+.
T Consensus 89 ~~~~~~~i~~--~~~~~~~~~~~l~~~~~~~~~pgd~Vlv~~P~y~~y~~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~ 166 (397)
T d3tata_ 89 PVLKQQRVAT--IQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLAT 166 (397)
T ss_dssp HHHHTTCEEE--CCBSHHHHHHHHHHHHHHHHCSSCCCEECSSCCTTHHHHHHTTTCCCEECCCCCTTTSSCCHHHHHHH
T ss_pred CcCCcCcEEE--ecCchhHHHHHHHHHHhhhcCCCCcceecccCccccHHHHHHcCCEEEEEecchhhccccchHHHHHH
Confidence 9999999999 66666543321 11333445669999999999999999999999999999995444566788888888
Q ss_pred HHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecC
Q psy14428 304 IKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSF 383 (583)
Q Consensus 304 l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~ 383 (583)
+....++++++++||||||||.++|.+++++|+++|++++++||+||+|.+|.|++. ...++.....+..+++|++.||
T Consensus 167 ~~~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~-~~~~~~~~~~~~~~~~i~~~s~ 245 (397)
T d3tata_ 167 LKTLPARSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGME-EDAYAIRAIASAGLPALVSNSF 245 (397)
T ss_dssp HTTCCSSCCCEECSSSCSSSCCCCCHHHHHHHHHHHHHTTCCCEECBSCTTSSSCHH-HHHHHHHHHHTTTCCCEECBCC
T ss_pred hhhcccccEEEEecCCCCCCCeeCCHHHHHHHHHHHhhcCeeEEeehhhhhhccCCc-ccchhhhhhhhcCCceEEEecC
Confidence 877778899999999999999999999999999999999999999999999999851 1222333334556789999999
Q ss_pred cccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhc
Q psy14428 384 SKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGF 463 (583)
Q Consensus 384 SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~ 463 (583)
||+++++|+|+||+++..+..+....+...+....+....+++...|.++..++.+
T Consensus 246 SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~------------------------ 301 (397)
T d3tata_ 246 SKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLND------------------------ 301 (397)
T ss_dssp HHHHTBTTTCCBCCEEECSSTTHHHHHHHHHHHHTTTTTSSCCSHHHHHHHHHHHS------------------------
T ss_pred cccccccCccccccccchhHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHhcCC------------------------
Confidence 99999999999999993222211122233333334555566666666666666554
Q ss_pred cCCCccchhhHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCChhhhhhhh
Q psy14428 464 YSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSASQGMSNR 543 (583)
Q Consensus 464 ~~~~p~~g~~i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~~~~~~~~ 543 (583)
+.....|.++++.+++++..+|+.+.+.|+..+.+|+|.+..+++|||+|..+++++.++
T Consensus 302 ------------------~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~ls~e~~~~-- 361 (397)
T d3tata_ 302 ------------------EALKASWLAEVEEMRTRILAMRQELVKVLSTEMPERNFDYLLNQRGMFSYTGLSAAQVDR-- 361 (397)
T ss_dssp ------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCTTSCTTHHHHCCSSBCCCCCCHHHHHH--
T ss_pred ------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEcCCCceEEecCcCHHHHHH--
Confidence 445567888899999999999999999999988888898999999999999998876544
Q ss_pred hhhhHHHHHHHHhhcCCCccccccccCCcceeecCCCCCC
Q psy14428 544 ISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSASQ 583 (583)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (583)
|.++.++++. +.|+|||+++++++
T Consensus 362 ---L~~e~~V~l~-------------~g~Ri~~a~~~~~~ 385 (397)
T d3tata_ 362 ---LREEFGVYLI-------------ASGRMCVAGLNTAN 385 (397)
T ss_dssp ---HTTTTCEECC-------------SSSCCBTTSCCTTT
T ss_pred ---HHHhCCEEeC-------------CCCEEEeccCCHHH
Confidence 2222222221 23588999888764
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Probab=100.00 E-value=2.4e-48 Score=409.47 Aligned_cols=372 Identities=29% Similarity=0.547 Sum_probs=292.9
Q ss_pred cchhhHhhccccccCCCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCC
Q psy14428 146 DIKPLKQQLKGFNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFP 225 (583)
Q Consensus 146 ~~~~i~~l~~~~~~~~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~ 225 (583)
++++++.+...++++.++++|||++|.+.++.|.|++++.|+++++++.++...++|+|..|+++||+++++++.+.++.
T Consensus 9 ~~d~i~~l~~~~~~d~~~~~InL~iG~~~d~~g~~~~~~~V~~A~~~~~~~~~~~~Y~p~~G~~~lr~aia~~~~~~~~~ 88 (394)
T d2ay1a_ 9 APDKILALMGEFRADPRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMGELILGDGLK 88 (394)
T ss_dssp CCCSHHHHHHHHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCSSCCHHHHHHHHHHHHGGGCC
T ss_pred CCChHHHHHHHHhCCCCCCCEEccCCCccCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhccccc
Confidence 46789999888888888999999999988888888889999999999987765678999999999999999999887766
Q ss_pred CCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHH
Q psy14428 226 AFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIK 305 (583)
Q Consensus 226 ~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~ 305 (583)
...++.++ |.|++++..+...++. +..+||.|++|+|+|+.|..+++.+|++++.+|+.+++++..+.+.+++...
T Consensus 89 ~~~~~~~~---~~~~~~~~~l~~~~~~-~~~~gd~V~~p~p~~~~y~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~ 164 (394)
T d2ay1a_ 89 SETTATLA---TVGGTGALRQALELAR-MANPDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLA 164 (394)
T ss_dssp GGGEEEEE---EEHHHHHHHHHHHHHH-HHCTTCCEEEEESCCHHHHHHHHHHTCCEEEEECEETTTTEECHHHHHHHHH
T ss_pred ccccccee---ccCchHHHHHHHHHhh-hcCCceEEEEecccccchHHHHHHcCCEEEEecccchhcccccchhHHHHHh
Confidence 55454444 5555555554433433 3455999999999999999999999999999998655556667888888887
Q ss_pred cCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHH-HHHHhcCcEEEEecCc
Q psy14428 306 AMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLR-YFAKEVGQLCLAQSFS 384 (583)
Q Consensus 306 ~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~-~~~~~~~~vi~i~S~S 384 (583)
...++++++++||||||||.++|.+++++|+++|++++++||+||+|.+|.|++. ...+.. .......+++++.|+|
T Consensus 165 ~~~~~~~i~~~~~p~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~--~~~~~~~~~~~~~~~~~~~~s~s 242 (394)
T d2ay1a_ 165 AAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLE--EDAAGTRLIASRIPEVLIAASCS 242 (394)
T ss_dssp TCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHH--HHHHHHHHHHHHCSSEEEEEECT
T ss_pred hcccCcEEEEeCCCCCCCCCCCCHHHHHHHHHHhhcceEEEEEeccchhhccccc--ccchhhhhhhhhccccccccccc
Confidence 7788899999999999999999999999999999999999999999999999862 222222 2234557899999999
Q ss_pred ccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhcc
Q psy14428 385 KNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFY 464 (583)
Q Consensus 385 K~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~ 464 (583)
|.++++|+|+||+++ +.. +++...+. ........+...
T Consensus 243 k~~~~~G~R~G~~~~--~~~-----~~~~~~~~-----------------------------------~~~~~~~~~~~~ 280 (394)
T d2ay1a_ 243 KNFGIYRERTGCLLA--LCA-----DAATRELA-----------------------------------QGAMAFLNRQTY 280 (394)
T ss_dssp TTTTCGGGCEEEEEE--ECS-----SHHHHHHH-----------------------------------HHHHHHHHHTTT
T ss_pred ccccCCcccccchhh--chh-----HHHHHHHh-----------------------------------hhhhHhhhcccc
Confidence 999999999999999 532 22222211 111222223344
Q ss_pred CCCccchhhHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCChhhhhhhhh
Q psy14428 465 SNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSASQGMSNRI 544 (583)
Q Consensus 465 ~~~p~~g~~i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~~~~~~~~~ 544 (583)
.+++..+..++..++.++.+...|.++++.+++++.++|+.|.+.|++++.++.|.+..+++|||+|+++++++.++
T Consensus 281 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~ls~~~~~~--- 357 (394)
T d2ay1a_ 281 SFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRDLSGSDRFGFVAEHRGMFSRLGATPEQVKR--- 357 (394)
T ss_dssp SSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTHHHHCCSSEEECCCCHHHHHH---
T ss_pred cchhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceeeECCCceeEEecCcCHHHHHH---
Confidence 45555556666666666777788999999999999999999999999988888899999999999999999876654
Q ss_pred hhhHHHHHHHHhhcCCCccccccccCCcceeecCCCCCC
Q psy14428 545 SSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSASQ 583 (583)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (583)
|.++.++++.+ .|+|||+++++++
T Consensus 358 --L~~~~~V~~~~-------------g~Ri~~a~l~~~~ 381 (394)
T d2ay1a_ 358 --IKEEFGIYMVG-------------DSRINIAGLNDNT 381 (394)
T ss_dssp --HHHHHCEECCT-------------TCEEEGGGCCTTT
T ss_pred --HHHhCCEEecC-------------CCEEEecCCCHHH
Confidence 45555443332 2589999988763
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1.9e-46 Score=393.32 Aligned_cols=302 Identities=16% Similarity=0.126 Sum_probs=257.1
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
.+.++|+|+.|+|+.+ +++.+++++.+.+.++ ..+|+++.|.++||++|++|+..++++.+++++|++ |+|+
T Consensus 29 ~G~~vi~l~~g~p~~~-----~p~~i~~a~~~~~~~~-~~~Y~~~~G~~~lR~~ia~~~~~~~~~~~~~~~i~i--t~G~ 100 (382)
T d1b5pa_ 29 QGVDLVALTAGEPDFD-----TPEHVKEAARRALAQG-KTKYAPPAGIPELREALAEKFRRENGLSVTPEETIV--TVGG 100 (382)
T ss_dssp TTCCCEECCCSSCSSC-----CCHHHHHHHHHHHHTT-CCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEE--ESHH
T ss_pred CCCCeEECCCCCCCCC-----CCHHHHHHHHHHHhcC-CcCCCCCCCCHHHHHHHHhhhhhhccccccccccee--cCCH
Confidence 4678999999998633 5688999998887664 578999999999999999999999999999999999 9999
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCC
Q psy14428 241 SGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSH 320 (583)
Q Consensus 241 ~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~ 320 (583)
++++.++ +..++++||.|++++|+|+.|...++..|++++.+|+.+++++++|++.+++.+ .++++++++||||
T Consensus 101 ~~al~~~---~~~l~~~gd~vl~~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~---~~~~~~i~~~~P~ 174 (382)
T d1b5pa_ 101 SQALFNL---FQAILDPGDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAI---TPRTKALVVNSPN 174 (382)
T ss_dssp HHHHHHH---HHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHTTC---CTTEEEEEEESSC
T ss_pred HHHHHHH---HHHhCCCCCEEEECCCCcHHHHHHHHHhcCeEEEEecccccccCCCHHHHHHhC---CCCCeEEEECCCC
Confidence 9999984 556778899999999999999999999999999999844455788998887765 6788999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEE
Q psy14428 321 NPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVL 400 (583)
Q Consensus 321 NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~ 400 (583)
||||.+++.+++++|+++|++++++||+||+|.++.|++. ..++.. ...+++|+++||||+|++||+|+||+++
T Consensus 175 NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~--~~~~~~---~~~~~~i~~~s~SK~~~~~GlR~G~~~~- 248 (382)
T d1b5pa_ 175 NPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGE--HFSPGR---VAPEHTLTVNGAAKAFAMTGWRIGYACG- 248 (382)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSC--CCCGGG---TCTTTEEEEEESTTTTTCGGGCCEEEEC-
T ss_pred CCcchhCCHHHHHHHHHHHHHcCeEEEEEccccceecCCC--CCCHHH---cCCCCEEEEecchhhccCcHhheEEEEE-
Confidence 9999999999999999999999999999999999999863 333322 2347999999999999999999999998
Q ss_pred cCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHhcC
Q psy14428 401 TPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEILS 480 (583)
Q Consensus 401 ~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~l~ 480 (583)
| +++++.+.+.+.....+++.+.|.++...+.+..
T Consensus 249 -~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------- 283 (382)
T d1b5pa_ 249 -P-----KEVIKAMASVSRQSTTSPDTIAQWATLEALTNQE--------------------------------------- 283 (382)
T ss_dssp -C-----HHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHH---------------------------------------
T ss_pred -C-----HHHHHHHHHHHHhcccCccccccccccccccccc---------------------------------------
Confidence 7 6899999999888899999999988887775421
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCChh
Q psy14428 481 DPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSAS 537 (583)
Q Consensus 481 ~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~~ 537 (583)
.+...++.+++.+..+|+.+.+.+...+ +.+..|++|+|.|.+++..
T Consensus 284 ------~~~~~~~~~~~~~~~~~~~~~~~l~~~g----~~~~~p~gg~~~~~~~~~~ 330 (382)
T d1b5pa_ 284 ------ASRAFVEMAREAYRRRRDLLLEGLTALG----LKAVRPSGAFYVLMDTSPI 330 (382)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHHHHT----CCBCCCSBTTEEEEECTTT
T ss_pred ------chhHHHHHHHHHHHhhhhHHHHHHhhcC----CeEecCCceEEEeEeCCCC
Confidence 1223355667777888888888888765 5577899999999877543
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Probab=100.00 E-value=4.9e-47 Score=398.56 Aligned_cols=303 Identities=13% Similarity=0.146 Sum_probs=258.2
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
.+.++|+|+.|+|+.+ +++.+.+++.+.++++ ..+|+++.|.++||++||+|+.+.+|+.+++++|++ |+|+
T Consensus 28 ~g~~vi~l~~G~p~~~-----~p~~v~~a~~~~~~~~-~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~~~i~i--t~G~ 99 (388)
T d1j32a_ 28 EGIDVCSFSAGEPDFN-----TPKHIVEAAKAALEQG-KTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILV--TNGG 99 (388)
T ss_dssp TTCCCEECCCSSCSSC-----CCHHHHHHHHHHHHTT-CCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEE--ESHH
T ss_pred CCCCeEECCCCCCCCC-----CCHHHHHHHHHHHhcC-CCCCCCCCCCHHHHHHHHHHHHHhcccCCCCceEEE--cCCH
Confidence 4668999999998632 5688999988887664 578999999999999999999999999999999999 9999
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCC
Q psy14428 241 SGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSH 320 (583)
Q Consensus 241 ~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~ 320 (583)
++++.++ +..++.+||+|++++|+|+.|...++..|++++.+++.+++++++|++.+++.+ .++++++++||||
T Consensus 100 ~~al~~~---~~~~~~~gd~Vlv~~P~y~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~~l~~~~---~~~~~~~~~~~P~ 173 (388)
T d1j32a_ 100 KQSIFNL---MLAMIEPGDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAI---TPKTKLLVFNTPS 173 (388)
T ss_dssp HHHHHHH---HHHHCCTTCEEEEESSCCTHHHHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHC---CTTEEEEEEESSC
T ss_pred HHHHHHH---HHHHhCCCCEEEEcCCCcHHHHHHHHHhcCeEEEEecccccccCCCHHHHHHhC---CCCCeEEEECCCC
Confidence 9999995 556778899999999999999999999999999999844445789999998877 6788999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHH-HHhcCcEEEEecCcccccccCccceEEEE
Q psy14428 321 NPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYF-AKEVGQLCLAQSFSKNMGLYGERVGTFSV 399 (583)
Q Consensus 321 NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~-~~~~~~vi~i~S~SK~~~l~GlRiG~lv~ 399 (583)
||||.+++.+++++|+++|++++++||+||+|.++.+++. .+.++... .+..+++|+++||||+|++||+|+||+++
T Consensus 174 NPTG~~~~~~~~~~l~~~~~~~~~~iI~De~Y~~~~~~~~--~~~s~~~~~~~~~~~~i~~~S~SK~~~~~GlRvG~~~~ 251 (388)
T d1j32a_ 174 NPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDA--QHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVGFLAG 251 (388)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTC--CCCCGGGSCHHHHHTEEEEEESTTTTTCTTTCCEEEEC
T ss_pred CCCCcccchhhhhhhhcccccCCeEEEchhhhhcccccCC--CCCCHHHhCcccccceeEecCChhhhhcchhHeEEEEE
Confidence 9999999999999999999999999999999999999863 33333322 12346899999999999999999999998
Q ss_pred EcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHhc
Q psy14428 400 LTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEIL 479 (583)
Q Consensus 400 ~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~l 479 (583)
| +++++.+.+.......+++.+.|.++...+.+.
T Consensus 252 --~-----~~~~~~~~~~~~~~~~~~~~~~q~a~~~~~~~~--------------------------------------- 285 (388)
T d1j32a_ 252 --P-----VPLVKAATKIQGHSTSNVCTFAQYGAIAAYENS--------------------------------------- 285 (388)
T ss_dssp --C-----HHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHSC---------------------------------------
T ss_pred --C-----HHHHHHHHHhhhhccccccHHHHHHHhhcccch---------------------------------------
Confidence 7 689999999888888899999999887766432
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCChh
Q psy14428 480 SDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSAS 537 (583)
Q Consensus 480 ~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~~ 537 (583)
.++++++++.++++++.+.+.|++.. .+.+..|++|+|.|..++..
T Consensus 286 ---------~~~~~~~~~~~~~~~~~~~~~l~~~~---g~~~~~p~gg~~l~~~l~~~ 331 (388)
T d1j32a_ 286 ---------QDCVQEMLAAFAERRRYMLDALNAMP---GLECPKPDGAFYMFPSIAKT 331 (388)
T ss_dssp ---------SHHHHHHHHHHHHHHHHHHHHHHTCT---TCBCCCCCBTTEECCBCGGG
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHhCC---CCEecCCCceEEEEEECCCC
Confidence 12356677778889999999998752 26678899999999887653
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=2.4e-46 Score=393.12 Aligned_cols=316 Identities=14% Similarity=0.194 Sum_probs=263.4
Q ss_pred chhhHhhccccccCCCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCC-
Q psy14428 147 IKPLKQQLKGFNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFP- 225 (583)
Q Consensus 147 ~~~i~~l~~~~~~~~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~- 225 (583)
++.|.++.+... ..+++|+|+.|+|+.+ +++.+++++.+.++++ ..+|+|..|.++||++||+|+.+.++.
T Consensus 11 ~s~ir~~~~~~~--~~~dvi~l~~g~p~~~-----~p~~v~~~~~~a~~~~-~~~Y~~~~G~~~lr~aia~~~~~~~~~~ 82 (388)
T d1gdea_ 11 ASEIRKLFDIAA--GMKDVISLGIGEPDFD-----TPQHIKEYAKEALDKG-LTHYGPNIGLLELREAIAEKLKKQNGIE 82 (388)
T ss_dssp CCHHHHHHHHHH--HCTTCEECCCCSCCSC-----CCHHHHHHHHHHHHTT-CCSCCCTTCCHHHHHHHHHHHHHHHCCC
T ss_pred ccHHHHHHHHHh--CCCCeEECCCCCCCCC-----CCHHHHHHHHHHHhcC-ccCCCCCcCCHHHHHHHHHHHHhhcccc
Confidence 455666655432 3568999999998632 5688999988887654 578999999999999999999875554
Q ss_pred CCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHH
Q psy14428 226 AFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIK 305 (583)
Q Consensus 226 ~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~ 305 (583)
...+++|++ |+|+++++.++ +..++.+||+|++++|+|+.|...++..|++++.+|+.+++++++|++.+++.+
T Consensus 83 ~~~~~~i~~--t~G~~~~l~~~---~~~l~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~- 156 (388)
T d1gdea_ 83 ADPKTEIMV--LLGANQAFLMG---LSAFLKDGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYV- 156 (388)
T ss_dssp CCTTTSEEE--ESSTTHHHHHH---HTTTCCTTCEEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCHHHHHHHC-
T ss_pred CCChheeee--ccCcchHHHHH---HHHhcCCCCEEEECCCCcHHHHHHHHHcCCEEEEeecccccCCCCCHHHHHHhC-
Confidence 456678999 99999999984 566778899999999999999999999999999999854456899999998876
Q ss_pred cCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcc
Q psy14428 306 AMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSK 385 (583)
Q Consensus 306 ~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK 385 (583)
.++++++++||||||||.++|.+++++|+++|++++++||+||+|.++.+++. +..++.++.+..+++|+++||||
T Consensus 157 --~~~~~~i~~~~P~NPtG~~~s~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~--~~~~~~~~~~~~~~~i~~~S~SK 232 (388)
T d1gdea_ 157 --TDKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDA--RHYSIASLDGMFERTITVNGFSK 232 (388)
T ss_dssp --CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTC--CCCCGGGSTTCGGGEEEEEESTT
T ss_pred --ccCCeEEEECCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEEcCChhhhhccC--CCCChhhccCCCCeEEEEeCChh
Confidence 67889999999999999999999999999999999999999999999998762 34445554445679999999999
Q ss_pred cccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccC
Q psy14428 386 NMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYS 465 (583)
Q Consensus 386 ~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~ 465 (583)
+||+||+|+||+++ + +++++++.+.......+++.+.|.+++.++.++.+
T Consensus 233 ~~~~~GlR~G~ii~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------------------- 282 (388)
T d1gdea_ 233 TFAMTGWRLGFVAA--P-----SWIIERMVKFQMYNATCPVTFIQYAAAKALKDERS----------------------- 282 (388)
T ss_dssp TTTCGGGCCEEEEC--C-----HHHHHHHHHHHHTTTCSCCHHHHHHHHHHHTCHHH-----------------------
T ss_pred hccCccccEEEEEe--e-----ccchhhhhhccccccccccccchhhHHHHHhhccc-----------------------
Confidence 99999999999999 7 58999999999999999999999999999887432
Q ss_pred CCccchhhHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCChh
Q psy14428 466 NPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSAS 537 (583)
Q Consensus 466 ~~p~~g~~i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~~ 537 (583)
.++++.+++++.++++.+.+.|...+ +....|++|+|.|.+++..
T Consensus 283 -----------------------~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~p~gg~fl~~~l~~~ 327 (388)
T d1gdea_ 283 -----------------------WKAVEEMRKEYDRRRKLVWKRLNEMG----LPTVKPKGAFYIFPRIRDT 327 (388)
T ss_dssp -----------------------HHHHHHHHHHHHHHHHHHHHHHHHTT----CCCCCCCBTTEECCBCGGG
T ss_pred -----------------------hhHHHHHHHHHHHhhhhhhhhhhhcc----ccccCCCceEEEEEECCCC
Confidence 23345556666778888888888765 3467899999999887653
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=4.2e-44 Score=376.98 Aligned_cols=304 Identities=13% Similarity=0.118 Sum_probs=248.3
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
.+.++|+|++|+|.... ..+++.+++++.+.+.++ ..+|++..|.++||++||+++++++|+.+++++|++ |+|+
T Consensus 28 ~G~~vi~l~~G~P~~~d--f~~p~~i~~a~~~a~~~~-~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~i~i--~~G~ 102 (395)
T d1xi9a_ 28 KGIKVIRLNIGDPVKFD--FQPPEHMKEAYCKAIKEG-HNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRV--TAAV 102 (395)
T ss_dssp TTCCCEECCCCCGGGTT--CCCCHHHHHHHHHHHHTT-CCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEE--ESHH
T ss_pred CCCCeEECCCCCCCCCC--CCCCHHHHHHHHHHHhcC-CCCCCCCCCCHHHHHHHHHhhhhccccccccccccc--cccc
Confidence 35679999999985321 125688999988888664 567999999999999999999999999999999999 9999
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCC
Q psy14428 241 SGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSH 320 (583)
Q Consensus 241 ~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~ 320 (583)
++++.++ +..+..+||+|++++|+|+.|...++..|++++.+++.+++++.+|++.+++.+ .++++++++||||
T Consensus 103 ~~~~~~~---~~~~~~~Gd~vlv~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~~~~~~---~~~~~~v~l~~P~ 176 (395)
T d1xi9a_ 103 TEALQLI---FGALLDPGDEILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKI---TDRTKAIAVINPN 176 (395)
T ss_dssp HHHHHHH---HHHHCCTTCEEEEEESCCHHHHHHHHHTTCEEEEEEEEGGGTSEECHHHHHHHC---CTTEEEEEEESSC
T ss_pred chhhhhh---hhhhcCCCCEEEEcCCccccchhhhhhcCCEEEEEeccccccccchHHHHHHhh---cccccEEEecCCC
Confidence 9999985 556777899999999999999999999999999999855556788999888776 6788999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEE
Q psy14428 321 NPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVL 400 (583)
Q Consensus 321 NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~ 400 (583)
||||.+++.+++++|+++|++++++||+||+|.++.+++. ..+...+ ...++||+++||||+|++||+|+||+++
T Consensus 177 NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~---~~~~~~~-~~~~~vi~~~S~SK~~~~~GlRvG~~~~- 251 (395)
T d1xi9a_ 177 NPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGE---HISPGSL-TKDVPVIVMNGLSKVYFATGWRLGYMYF- 251 (395)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSC---CCCHHHH-CSSSCEEEEEESTTTTCCGGGCCEEEEE-
T ss_pred CCccchhhHHHHHHHHhhhhhcCeeEEecccccccccccc---ccchhhc-CCCCCEEEEeCcchhcccchhhcEeeEe-
Confidence 9999999999999999999999999999999999998752 2333333 3457899999999999999999999988
Q ss_pred cCCchhHHHHHHHHHH---HHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHH
Q psy14428 401 TPTSDETERIMSQLKI---LIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTE 477 (583)
Q Consensus 401 ~p~~~~~~~li~~l~~---~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~ 477 (583)
++++ ..+..+.+ .......+++.++|.++...+.++.
T Consensus 252 -~~~~---~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~------------------------------------ 291 (395)
T d1xi9a_ 252 -VDPE---NKLSEVREAIDRLARIRLCPNTPAQFAAIAGLTGPM------------------------------------ 291 (395)
T ss_dssp -ECTT---CTTHHHHHHHHHHHHHTCCSCSHHHHHHHHHHHSCC------------------------------------
T ss_pred -cCHH---HHHHHHHHHHHHhhcCCCCcCHHHHHHHHHHhcCCH------------------------------------
Confidence 3332 23333332 2344466788888888877765421
Q ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCC
Q psy14428 478 ILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLS 535 (583)
Q Consensus 478 ~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~ 535 (583)
++++++++.+.++|+.+.+.|++.+ .+.+..|++|+|.|..++
T Consensus 292 ------------~~~~~~~~~~~~~~~~l~~~L~~~~---~~~~~~p~gg~~~~~~l~ 334 (395)
T d1xi9a_ 292 ------------DYLKEYMKKLKERRDYIYKRLNEIP---GISTTKPQGAFYIFPKIE 334 (395)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHHTST---TEECCCCCBSSEECCEEC
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHhCC---CceecCCCeeEEEeEECC
Confidence 2356667778899999999998763 355678999999997765
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Probab=100.00 E-value=3.6e-44 Score=380.39 Aligned_cols=305 Identities=13% Similarity=0.100 Sum_probs=253.2
Q ss_pred CCccccCCccccCCCCCCCCChHHHHHHHHHhccC--CCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCC-CCeEEEecCC
Q psy14428 163 PKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKN--LDHEYANIGGDAKFCKLAAQLAYGEDFPAFKD-NRLAIVQGIS 239 (583)
Q Consensus 163 ~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~--~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~-~~I~i~~t~G 239 (583)
++.|||+.|+|+.+ +++.+++++.+.+.+. ..++|++..|.++||++||+|+.+++|..+++ ++|++ |+|
T Consensus 26 ~~~I~L~~G~Pd~~-----~p~~i~eal~~a~~~~~~~~~~Y~~~~G~~~lReaiA~~~~~~~g~~~~p~~~I~i--t~G 98 (418)
T d2r5ea1 26 YKPLNLGQGFPDYH-----APKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLV--TVG 98 (418)
T ss_dssp HCCEECSSSCCSSC-----CCHHHHHHHHHHHTCSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEE--ESH
T ss_pred CCCEEccCCCCCCC-----CCHHHHHHHHHHHhCCCccCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCccceEEE--cCC
Confidence 46899999998632 4688999988887652 24679999999999999999999999999985 89999 999
Q ss_pred chhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCC---------CCCChhhHHHHHHcCCCC
Q psy14428 240 GSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKT---------NGLDFAGMMEDIKAMPER 310 (583)
Q Consensus 240 ~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~---------~g~d~~~l~~~l~~~~~~ 310 (583)
+++|+.++ +..++++||.|++++|+|+.|...+...|.+++.+++ ++++ +..+++.+.+.. ..+
T Consensus 99 ~~~al~~~---~~~l~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 171 (418)
T d2r5ea1 99 AYEALYAT---IQGHVDEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPL-KPNKTGGTISSADWVLDNNELEALF---NEK 171 (418)
T ss_dssp HHHHHHHH---HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEEC-EESCCSSCEEGGGEECCHHHHHHHC---CTT
T ss_pred Cchhhhhh---hhhccccccceeccccccchhhHHHHHcCCeEEEEEe-cccccccchhhhhhhhhHHHHhhhh---hcc
Confidence 99999985 5567788999999999999999999999999999998 4432 223445554433 678
Q ss_pred cEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCccccccc
Q psy14428 311 SILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLY 390 (583)
Q Consensus 311 ~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~ 390 (583)
++++++||||||||.++|.+++++|+++|++++++||+||+|.++.+++. ..+++.++.+..+++++++||||.+++|
T Consensus 172 ~~~~~i~~p~NPtG~~~s~e~~~~l~~~a~~~~~~iI~De~y~~~~~~~~--~~~s~~~~~~~~~~~i~~~S~SK~~~~p 249 (418)
T d2r5ea1 172 TKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPF--EHIRICTLPGMWERTITIGSAGKTFSLT 249 (418)
T ss_dssp EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTC--CCCCGGGSTTTGGGEEEEEEHHHHTTCG
T ss_pred ccceecCCcCccccccccHHHHHHHhhhhhcCCeeeecccchhhhccCCC--ccccccccccccceeeeeecCCccccCC
Confidence 99999999999999999999999999999999999999999999999863 3344445455667999999999999999
Q ss_pred CccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccc
Q psy14428 391 GERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIH 470 (583)
Q Consensus 391 GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~ 470 (583)
|+|+||+++ + +++++++.+.......+++.+.|.+++..+.+.....
T Consensus 250 GlRiG~~~~--~-----~~~i~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~-------------------------- 296 (418)
T d2r5ea1 250 GWKIGWAYG--P-----EALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRL-------------------------- 296 (418)
T ss_dssp GGCCEEEES--C-----HHHHHHHHHHHTTTTCSCCHHHHHHHHHHHHHHHTTT--------------------------
T ss_pred Ccccccccc--c-----chhhhhhhhcccccccccccchhhhcccccccccccc--------------------------
Confidence 999999999 7 6899999999998899999999998887765421100
Q ss_pred hhhHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCC
Q psy14428 471 GARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLS 535 (583)
Q Consensus 471 g~~i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~ 535 (583)
....++++++++.+..+|+.+.+.|++.+ +.+..|++|+|+|.+++
T Consensus 297 ---------------~~~~~~~~~~~~~~~~~r~~l~~~L~~~g----~~~~~P~gg~f~~~~~~ 342 (418)
T d2r5ea1 297 ---------------KSPECYFNSISGELMAKRDYMASFLAEVG----MNPTVPQGGYFMVADWS 342 (418)
T ss_dssp ---------------TSTTSHHHHHHHHHHHHHHHHHHHHHHTT----CEEEECSBSSEEEEECG
T ss_pred ---------------ccchhhHHHHHHHHHHhhhhHHhhHhhcC----CcccCCCceeEEEEEcc
Confidence 00112366778888999999999999875 66788999999997664
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Probab=100.00 E-value=9e-44 Score=375.33 Aligned_cols=327 Identities=14% Similarity=0.164 Sum_probs=263.5
Q ss_pred ccccCcccc------chhhHhhccccccCCCCCccccCCccccCCCCCCCCChHHHHHHHHHhcc--CCCCCCCCCCCCH
Q psy14428 138 LDFAGMMED------IKPLKQQLKGFNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEK--NLDHEYANIGGDA 209 (583)
Q Consensus 138 ~d~~~m~~~------~~~i~~l~~~~~~~~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~--~~~~~Y~~~~G~~ 209 (583)
+||+.|+.. .+.|+++... ...+++|+|+.|.|+++ .+|.+.+++++.++++. ...++|++..|.+
T Consensus 1 ~~~~~~~~~~~~~~~~s~ire~~~~---~~~~~~i~l~~G~P~~~---~~P~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~ 74 (403)
T d1wsta1 1 INFDSFFSEKAMLMKASEVRELLKL---VETSDVISLAGGLPAPE---TFPVETIKKIAVEVLEEHADKALQYGTTKGFT 74 (403)
T ss_dssp CCGGGGCCHHHHHCCCHHHHHHHHH---HTSSSCEECCCCCCCGG---GSCHHHHHHHHHHHHHHSHHHHHSCCCSSCCH
T ss_pred CCHHHHHHHHHhcCCCcHHHHHHHH---hCCCCcEECCCCCCCcc---ccCHHHHHHHHHHHHHhCcccccCCCCCcCCH
Confidence 466666664 4455555433 34678999999998754 34567888888887754 2256899999999
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEeccc
Q psy14428 210 KFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFD 289 (583)
Q Consensus 210 ~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d 289 (583)
+||++||+|+.+++|..+++++|++ |+|+++++.++ +..+..+||.|++++|+|..|...++..|++++.++. +
T Consensus 75 ~lR~aia~~l~~~~g~~~~~~~I~i--t~G~~~al~~~---~~~l~~~gd~v~~~~P~y~~~~~~~~~~g~~~~~v~~-~ 148 (403)
T d1wsta1 75 PLRLALARWMEKRYDIPMSKVEIMT--VAGSQQALDLI---GRVFLNPGDPIVVEAPTYLAAIQAFKYYDPEFISIPL-D 148 (403)
T ss_dssp HHHHHHHHHHHHHHCCCCTTCEEEE--ESSHHHHHHHH---HHHHCCTTCEEEEEESCCHHHHHHHHTTCCEEEEEEE-E
T ss_pred HHHHHHHHHHHHHhCCCCChHHeee--cccchHHHHHH---HHHHhhcCCccccCCCcchhhhHHHhhccccceeEee-c
Confidence 9999999999998999999999999 99999999985 5557778999999999999999999999999999998 4
Q ss_pred CCCCCCChhhHH----HHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchH
Q psy14428 290 NKTNGLDFAGMM----EDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAF 365 (583)
Q Consensus 290 ~~~~g~d~~~l~----~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~ 365 (583)
++ +.+...+. +...+.++...++++++||||||.++|.+++++|+++|++|+++||+||+|.+|.+++. +.+
T Consensus 149 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~l~~i~~~a~~~~~~li~De~y~~l~~~~~--~~~ 224 (403)
T d1wsta1 149 DK--GMRVDLLEEKLEELRKQGKRVKIVYTVSTFQNPAGVTMSVDRRKKLLELANEYDFLIVEDGPYSELRYSGE--PTP 224 (403)
T ss_dssp TT--EECHHHHHHHHHHHHHTTCCCCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSC--CCC
T ss_pred cc--CCccccccccchhhhhccccccccccccccCCCCCccCCHHHHHHHHHHHHhcCceeccccchhheecCCC--CCC
Confidence 42 23333332 23334466788899999999999999999999999999999999999999999999873 344
Q ss_pred HHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhh
Q psy14428 366 SLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQ 445 (583)
Q Consensus 366 ~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~ 445 (583)
++.. .+..+++++++||||.++ ||+|+||+++ + +++++.+.........+++...|.+.+.++....
T Consensus 225 ~~~~-~~~~~~~i~~~S~SK~~~-~G~RiG~~i~--~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 291 (403)
T d1wsta1 225 PIKH-FDDYGRVIYLGTFSKILA-PGFRIGWVAA--H-----PHLIRKMEIAKQSIDLCTNTFGQAIAWKYVENGY---- 291 (403)
T ss_dssp CGGG-GCSSSCEEEEEESTTTTC-GGGCCEEEEE--C-----HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTH----
T ss_pred cccc-cCCCCcEEEEccccceec-Cccccccccc--c-----hHHHHHHHHHHhhhccccccchhhhHHhhhhccc----
Confidence 4443 245689999999999996 9999999999 7 6899999998888888999999998888776532
Q ss_pred hhhHHHHHHHHHHHHhhccCCCccchhhHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccc
Q psy14428 446 CDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQ 525 (583)
Q Consensus 446 ~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~ 525 (583)
+..+++++++.+...|+.+.+.|.+... ..+.+..|+
T Consensus 292 ------------------------------------------~~~~~~~~~~~~~~~~~~~~~~L~~~~~-~~~~~~~p~ 328 (403)
T d1wsta1 292 ------------------------------------------LDEHIPKIIEFYKPRRDAMLEALEEYMP-EGVEWTKPE 328 (403)
T ss_dssp ------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHCC-TTCEECCCS
T ss_pred ------------------------------------------cchhHHHHHHHHHHHHHHHHHHHHhhcc-CCeEEeCCC
Confidence 2234566677778888888888888643 235677899
Q ss_pred ccceeecCCCh
Q psy14428 526 KGMFCYTGLSA 536 (583)
Q Consensus 526 ~g~f~~~~l~~ 536 (583)
+|+|+|..++.
T Consensus 329 gg~~~~~~~~~ 339 (403)
T d1wsta1 329 GGMFVRVTLPE 339 (403)
T ss_dssp BSSEEEEECCT
T ss_pred ceeEEEEECCC
Confidence 99999988765
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.5e-43 Score=375.77 Aligned_cols=319 Identities=15% Similarity=0.205 Sum_probs=258.7
Q ss_pred chhhHhhccccccCCCCCccccCCccccCCCCCCCCChHHHHHHHHHhccC--CCCCCCCCCCCHHHHHHHHHHHhCCCC
Q psy14428 147 IKPLKQQLKGFNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKN--LDHEYANIGGDAKFCKLAAQLAYGEDF 224 (583)
Q Consensus 147 ~~~i~~l~~~~~~~~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~--~~~~Y~~~~G~~~Lr~aia~~~~~~~g 224 (583)
++.+.++.+. ..+++.|+|+.|.|+++ .+|.+.+.++++++.+.. ..++|+++.|.++||++||+|+++++|
T Consensus 25 ~s~ir~~~~~---~~~~~~I~l~~G~Pd~~---~~P~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g 98 (420)
T d1vp4a_ 25 SSIIREILKF---AADKDAISFGGGVPDPE---TFPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYG 98 (420)
T ss_dssp CCCHHHHTTT---TTSTTCEECCCCSCCGG---GSCHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHH---hCCCCcEecCCcCCCCc---cCCHHHHHHHHHHHHhhCCccccCCCCCcCCHHHHHHHHHHHHHHhC
Confidence 3455555443 46789999999999754 345677888888777542 347899999999999999999999888
Q ss_pred CC-CCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHH
Q psy14428 225 PA-FKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMED 303 (583)
Q Consensus 225 ~~-~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~ 303 (583)
+. +++++|++ |+|+++++.++ +..++++||.|++++|+|+.|...++..|++++.+|+ ++ .+++++.+...
T Consensus 99 ~~~~~~~~I~i--t~G~~~al~~~---~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~g~~~~~~~~-~~--~~~~~~~l~~~ 170 (420)
T d1vp4a_ 99 ITGLDEDNLIF--TVGSQQALDLI---GKLFLDDESYCVLDDPAYLGAINAFRQYLANFVVVPL-ED--DGMDLNVLERK 170 (420)
T ss_dssp CCSCCGGGEEE--EEHHHHHHHHH---HHHHCCTTCEEEEEESCCHHHHHHHHTTTCEEEEEEE-ET--TEECHHHHHHH
T ss_pred CCCCCHHHeEe--ccchhhhHHHH---HHhhhccccccccccccccchhHHHHHHhhhcccccc-cc--cccccchhhhh
Confidence 86 79999999 99999999985 5567788999999999999999999999999999998 55 47788877655
Q ss_pred HHc------CCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcE
Q psy14428 304 IKA------MPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQL 377 (583)
Q Consensus 304 l~~------~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~v 377 (583)
+.. ..+.+.++++||||||||.+++.+++++|+++|++++++||+||+|.+|.|++. ...+... .+..+++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~--~~~~~~~-~~~~~~~ 247 (420)
T d1vp4a_ 171 LSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGE--TVDPIFK-IGGPERV 247 (420)
T ss_dssp HHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSC--CCCCHHH-HHCTTTE
T ss_pred hhhhHHHhhccccceeeEecCCCCccchhhhhhhhhhhhhhhhcccccccccchhhhccccCc--ccccccc-cccccce
Confidence 432 134567888999999999999999999999999999999999999999999862 3333433 3556899
Q ss_pred EEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHH
Q psy14428 378 CLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLK 457 (583)
Q Consensus 378 i~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~ 457 (583)
++++|+||.++ ||+|+||+++ + +++++++.+.......+++.+.|.+++.++.+..
T Consensus 248 i~~~s~sk~~~-~G~RiG~~~~--~-----~~~i~~l~~~~~~~~~~~~~~~q~~~a~~l~~~~---------------- 303 (420)
T d1vp4a_ 248 VLLNTFSKVLA-PGLRIGMVAG--S-----KEFIRKIVQAKQSADLCSPAITHRLAARYLERYD---------------- 303 (420)
T ss_dssp EEEEESTTTTC-GGGCEEEEEC--C-----HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSC----------------
T ss_pred eEEeccccccc-cccccccccc--c-----chhhhhhhhhhhhccccCchhhhhhhhhhccccc----------------
Confidence 99999999885 9999999998 7 6899999999988889999999999888876532
Q ss_pred HHHhhccCCCccchhhHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CcccccccccceeecCCCh
Q psy14428 458 ILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKK-NWDHITNQKGMFCYTGLSA 536 (583)
Q Consensus 458 ~~~r~~~~~~p~~g~~i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg-~~~~~~~~~g~f~~~~l~~ 536 (583)
|.++++++++.+.++++.+.+.|++..... ++.+..|++|+|+|..+++
T Consensus 304 ------------------------------~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~g~~~~~p~gg~f~~~~~~~ 353 (420)
T d1vp4a_ 304 ------------------------------LLEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVKSEGGLFIWLTLPE 353 (420)
T ss_dssp ------------------------------HHHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCEECCCSBSSEEEEECCT
T ss_pred ------------------------------ccccchhHHHHhhhhcccchhhhhhhhccCCCcEEecCCceEEEEEECCC
Confidence 233455566677788888888887753211 3567789999999988764
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.7e-44 Score=377.40 Aligned_cols=308 Identities=15% Similarity=0.124 Sum_probs=255.1
Q ss_pred CCCccccCCccccCCCCCCCCChHHHHHHHHHhccC-CCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCC-CCeEEEecCC
Q psy14428 162 HPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKN-LDHEYANIGGDAKFCKLAAQLAYGEDFPAFKD-NRLAIVQGIS 239 (583)
Q Consensus 162 ~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~-~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~-~~I~i~~t~G 239 (583)
.+++|+|++|.|+.+ +++.+.+++.+.+.++ ..++|++..|.++||++||+|+++++|+++++ ++|++ |+|
T Consensus 24 ~~dvI~l~~G~p~~~-----~p~~v~~a~~~al~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I~i--t~G 96 (418)
T d1w7la_ 24 EHDVVNLGQGFPDFP-----PPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLV--TVG 96 (418)
T ss_dssp TSCCEECCCCSCSSC-----CCHHHHHHHHHHTSSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEE--ESH
T ss_pred CCCCEECCCCCCCCC-----CCHHHHHHHHHHHhCCCcccCCCCCcCCHHHHHHHHHHHHHHhCCCCCcccceee--ccC
Confidence 567999999998643 5688999998888753 34579999999999999999999888999886 78999 999
Q ss_pred chhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccC----------CCCCCChhhHHHHHHcCCC
Q psy14428 240 GSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDN----------KTNGLDFAGMMEDIKAMPE 309 (583)
Q Consensus 240 ~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~----------~~~g~d~~~l~~~l~~~~~ 309 (583)
+++++.++ +..++.+||.|++++|+|+.|...+...|++++.++.... +++.+|.+.... ...+
T Consensus 97 ~~~al~~~---~~~l~~~g~~vlv~~p~~~~y~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~ 170 (418)
T d1w7la_ 97 GYGALFTA---FQALVDEGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAG---KFTS 170 (418)
T ss_dssp HHHHHHHH---HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEECC---CCSEEGGGEECCHHHHHH---HCCT
T ss_pred cHHHHHHH---HHhhccCCceeeccccccchhHHHHHHcCCEeeccccccccccccccccccCcccchhhhhc---cccc
Confidence 99999995 5667788999999999999999999999999999887321 112234443333 3378
Q ss_pred CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccc
Q psy14428 310 RSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGL 389 (583)
Q Consensus 310 ~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l 389 (583)
+++++++||||||||.++|.+++++|+++|++++++||+||+|.++.|++ ....++.++.+..+++|++.||||.+++
T Consensus 171 ~~~~i~~~~p~NPtG~~~s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~--~~~~~~~~~~~~~~~~i~~~S~SK~~~~ 248 (418)
T d1w7la_ 171 RTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDG--HQHISIASLPGMWERTLTIGSAGKTFSA 248 (418)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTT--CCCCCGGGSTTTGGGEEEEEEHHHHTTC
T ss_pred cccceeccCcCCcccccccHHHHHHHHHHHHhcCCCchhhhhhHHhhcCC--CCCCCHHHccccccccceecccCccccC
Confidence 89999999999999999999999999999999999999999999999986 3444555555556799999999999999
Q ss_pred cCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCcc
Q psy14428 390 YGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPI 469 (583)
Q Consensus 390 ~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~ 469 (583)
||+|+||+++ + +++++++.++......+++.+.|.+++.++.+.....
T Consensus 249 pG~RvG~~v~--~-----~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~------------------------- 296 (418)
T d1w7la_ 249 TGWKVGWVLG--P-----DHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLF------------------------- 296 (418)
T ss_dssp GGGCCEEEEC--C-----HHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHTT-------------------------
T ss_pred CCCccccccc--c-----hhhhhhhccccccccccccchhhHHHHHHhhhccccc-------------------------
Confidence 9999999999 7 6899999999999999999999999988886532100
Q ss_pred chhhHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCCh
Q psy14428 470 HGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSA 536 (583)
Q Consensus 470 ~g~~i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~ 536 (583)
..+.+.+..+++++.++|+.+.+.|++.+ +.+..|+||+|.|.+++.
T Consensus 297 ----------------~~~~~~~~~~~~~~~~~r~~l~~~L~~~g----~~~~~P~gg~f~~~~~~~ 343 (418)
T d1w7la_ 297 ----------------RQPSSYFVQFPQAMQRCRDHMIRSLQSVG----LKPLIPQGSYFLITDISD 343 (418)
T ss_dssp ----------------TSTTSHHHHHHHHHHHHHHHHHHHHHTTT----CEEEECSBSSEEEEECHH
T ss_pred ----------------cccccccccchhhhhhhhhhhhhhhhhcC----CcccCCCceeEEEEECcc
Confidence 01122356777888999999999998865 667889999999987653
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.9e-42 Score=362.68 Aligned_cols=299 Identities=13% Similarity=0.128 Sum_probs=253.2
Q ss_pred CCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCC-CeEEEecCCc
Q psy14428 162 HPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDN-RLAIVQGISG 240 (583)
Q Consensus 162 ~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~-~I~i~~t~G~ 240 (583)
.++.|||+.|+|+.+ +++.+++++.+.+.++ .++|++..|.++||++||+|+++.+|+.++++ +|++ |+|+
T Consensus 25 ~~~~i~l~~G~Pd~~-----~p~~i~~a~~~~~~~~-~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I~v--t~G~ 96 (382)
T d1u08a_ 25 QHQAINLSQGFPDFD-----GPRYLQERLAHHVAQG-ANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITV--TAGA 96 (382)
T ss_dssp HTTCEECCCSSCSSC-----CCHHHHHHHHHHHHTT-CCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEE--ESSH
T ss_pred cCCCEEccCCCCCCC-----CCHHHHHHHHHHHhcC-CCCCCCCcCCHHHHHHHHHHHHHHhCCCCCCCceEEe--ccch
Confidence 357899999999742 5688999988877664 67899999999999999999999889998887 5999 9999
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCC
Q psy14428 241 SGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSH 320 (583)
Q Consensus 241 ~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~ 320 (583)
++++.++ +..++++||.|++++|+|+.+...+...|++++.++. +++.+.+|++.+++.+ .+++++++++|||
T Consensus 97 ~~al~~~---~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~-~~~~~~~d~~~l~~~~---~~~~~~i~l~~P~ 169 (382)
T d1u08a_ 97 TEALYAA---ITALVRNGDEVICFDPSYDSYAPAIALSGGIVKRMAL-QPPHFRVDWQEFAALL---SERTRLVILNTPH 169 (382)
T ss_dssp HHHHHHH---HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEEC-CTTTCCCCHHHHHHHC---CTTEEEEEEESSC
T ss_pred HHHHHHH---HhhcccccceEEEecccccchhhhhhhccccceeccc-ccccccCCHHHHhhhh---ccCccEEEECCCC
Confidence 9999995 5667888999999999999999999999999988888 5666778888887765 6789999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEE
Q psy14428 321 NPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVL 400 (583)
Q Consensus 321 NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~ 400 (583)
||||.+++.+++++|+++|.++++++++||+|..+.+++. ...+.....+..+++|++.|+||.+++||+|+||+++
T Consensus 170 NPtG~v~~~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~s~SK~~~~pG~RiG~~v~- 246 (382)
T d1u08a_ 170 NPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQ--GHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYCVA- 246 (382)
T ss_dssp TTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSS--CCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCEEEEC-
T ss_pred cccccccccccchhhhhhhccccceeeeecchhhcccccc--ccccccccccccCcEEEEeeccccccCCcccchhhhc-
Confidence 9999999999999999999999999999999999988763 2222222234567999999999999999999999999
Q ss_pred cCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHhcC
Q psy14428 401 TPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEILS 480 (583)
Q Consensus 401 ~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~l~ 480 (583)
| +++++++.+.+.....+++.+.|.+++.+++++.
T Consensus 247 -~-----~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~--------------------------------------- 281 (382)
T d1u08a_ 247 -P-----APISAEIRKVHQYLTFSVNTPAQLALADMLRAEP--------------------------------------- 281 (382)
T ss_dssp -C-----HHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHCT---------------------------------------
T ss_pred -c-----chhHHHHHhhhcccccccccccccccccccccch---------------------------------------
Confidence 7 6899999999999999999999999998876421
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCCh
Q psy14428 481 DPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSA 536 (583)
Q Consensus 481 ~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~ 536 (583)
++++.+++.+.++|+.+.+.++..+ +.+..++||+|.|..++.
T Consensus 282 ---------~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~~p~gg~~~~~~~~~ 324 (382)
T d1u08a_ 282 ---------EHYLALPDFYRQKRDILVNALNESR----LEILPCEGTYFLLVDYSA 324 (382)
T ss_dssp ---------HHHHTHHHHHHHHHHHHHHHTTSSS----CEECCCCBSSEEEEECTT
T ss_pred ---------HHHHHHHHHHHhhhhhhhhhhccCC----cEEecCCceEEEEEecCC
Confidence 1245566777888988888876544 567889999999987653
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=7.8e-42 Score=356.94 Aligned_cols=299 Identities=15% Similarity=0.138 Sum_probs=246.0
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
.+.++|+|+.|+|+.+ +++.+.+++.+.+.++ .++|++..|.++||+++++++...+++.+++++|++ |+|+
T Consensus 26 ~G~~vI~l~~G~p~~~-----~p~~i~~~~~~~~~~~-~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~~--t~G~ 97 (375)
T d1o4sa_ 26 KGEDVINLTAGEPDFP-----TPEPVVEEAVRFLQKG-EVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVV--TNGA 97 (375)
T ss_dssp TTCCCEECCCSSCSSC-----CCHHHHHHHHHHHTTC-CCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEE--ESHH
T ss_pred CCCCeEECCCcCCCCC-----CCHHHHHHHHHHHhcC-CcCCCCCcCCHHHHHHHHhhhhhccccccccccccc--cCcH
Confidence 3567999999998632 5688888888877654 578999999999999999999988999999999999 9999
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCC
Q psy14428 241 SGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSH 320 (583)
Q Consensus 241 ~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~ 320 (583)
++++.++ +..++++||.|++++|+|+.|...+...|..++.+++.+.+++.++.+.++... .+++++++++|||
T Consensus 98 ~~al~~~---~~~l~~~gd~vlv~~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~nP~ 171 (375)
T d1o4sa_ 98 KQALFNA---FMALLDPGDEVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLL---VGKTKAVLINSPN 171 (375)
T ss_dssp HHHHHHH---HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHHTC---CTTEEEEEEESSC
T ss_pred HHHHHHH---HHHHhCCCCEEEEccCccccchhhhhccccccccccccccccccchhHHHHHhh---ccCccEEEEeCCC
Confidence 9999984 566778899999999999999999999999999988844444666666665543 6788999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEE
Q psy14428 321 NPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVL 400 (583)
Q Consensus 321 NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~ 400 (583)
||||.++|.+++++|+++|++|+++||+||+|.++.++.. .. +.....+..+++|+++||||+|++||+|+||+++
T Consensus 172 NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~--~~-~~~~~~~~~~~~i~~~S~SK~~~l~G~R~G~~~~- 247 (375)
T d1o4sa_ 172 NPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDE--FT-SILDVSEGFDRIVYINGFSKSHSMTGWRVGYLIS- 247 (375)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSC--CC-CHHHHCSSSTTEEEEEESTTTTTCGGGCCEEEEC-
T ss_pred CCccCCCCHHHHHHHHHhHHHcCCceehHhhhcccccccc--cc-ccccccCCCCCEEEEeechhhccCCccccccccc-
Confidence 9999999999999999999999999999999999998762 22 3333456678999999999999999999999999
Q ss_pred cCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHhcC
Q psy14428 401 TPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEILS 480 (583)
Q Consensus 401 ~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~l~ 480 (583)
+ +++++.+.........+.+...|.+....+++.
T Consensus 248 -~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------- 281 (375)
T d1o4sa_ 248 -S-----EKVATAVSKIQSHTTSCINTVAQYAALKALEVD---------------------------------------- 281 (375)
T ss_dssp -C-----HHHHHHHHHHHHHHTCSCCHHHHHHHHHHTTCC----------------------------------------
T ss_pred -c-----ccchhhhhhhhccccccccccchhhhhhhcccc----------------------------------------
Confidence 7 578888888877777777777776665554431
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCChhh
Q psy14428 481 DPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSASQ 538 (583)
Q Consensus 481 ~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~~~ 538 (583)
....++.+.++++.+.+.|++.+ +.+..|++|+|.|..++...
T Consensus 282 -----------~~~~~~~~~~r~~~~~~~l~~~g----~~~~~p~gg~f~~~~~~~~~ 324 (375)
T d1o4sa_ 282 -----------NSYMVQTFKERKNFVVERLKKMG----VKFVEPEGAFYLFFKVRGDD 324 (375)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHTT----CCCCCCSBSSEEEEECSSCH
T ss_pred -----------hhhhHHHHHHHHHHHHHHHHhcC----ceEecCCccEEEEEECCCCH
Confidence 12233455677888888888765 56778999999998886543
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Probab=100.00 E-value=3.4e-42 Score=364.34 Aligned_cols=324 Identities=13% Similarity=0.110 Sum_probs=244.3
Q ss_pred hhHhhccccccCCC-CCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCC----
Q psy14428 149 PLKQQLKGFNKDPH-PKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGED---- 223 (583)
Q Consensus 149 ~i~~l~~~~~~~~~-~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~---- 223 (583)
++..+.+.++...+ .++|+|+.|+|+.+. ++.+++.+.+++.+.......++|+|..|.++||++||+|+.+++
T Consensus 15 pir~~~~~~~~~~~~~~vI~L~~G~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~~~~~ 93 (412)
T d1bw0a_ 15 PIRTVSDNAKPSPSPKPIIKLSVGDPTLDK-NLLTSAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKE 93 (412)
T ss_dssp HHHHHHHTCCCCCSCSCCEECCCCCTTTTS-CSCCCHHHHHHHHHHHHTTCSSSCCCTTCCHHHHHHHHHHHHHHHCCST
T ss_pred HHHHHHHhcCCCCCCCCcEECcCCCCCCCC-CccccHHHHHHHHHHhhCCCCCCCCCCcCCHHHHHHHHHHHHHhcCccc
Confidence 45554444443333 367999999986432 233567788888777766556789999999999999999998653
Q ss_pred --CCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHH
Q psy14428 224 --FPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMM 301 (583)
Q Consensus 224 --g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~ 301 (583)
+..+++++|++ |+|+++++.++ +..++.+||+|++++|+|+.|...++..|++++.+|+..++++.++++.++
T Consensus 94 ~~~~~~~~~~I~i--t~G~~~al~~~---~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~~~~~l~ 168 (412)
T d1bw0a_ 94 ELKSTIVKDNVVL--CSGGSHGILMA---ITAICDAGDYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEADLDEIR 168 (412)
T ss_dssp TTGGGCCGGGEEE--ESHHHHHHHHH---HHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHH
T ss_pred ccCCCCCCCeEEE--ecccccchhhh---hhhhhccccceeeeeccchhhhhhhhccCccccccccccccccchhhHHHH
Confidence 46789999999 99999999985 556788899999999999999999999999999999943344667787777
Q ss_pred HHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHH---HHHhcCcEE
Q psy14428 302 EDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRY---FAKEVGQLC 378 (583)
Q Consensus 302 ~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~---~~~~~~~vi 378 (583)
+.. .++++++++||||||||.+++.+++++|+++|++++++||+||+|.++.|++. .+.+... ..+...+++
T Consensus 169 ~~~---~~~~~~~~l~np~NPtG~~~~~~~~~~i~~~~~~~~~~vi~De~Y~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 243 (412)
T d1bw0a_ 169 RLK---DDKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGK--DPNATFTSVADFETTVPRV 243 (412)
T ss_dssp HHC---CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSS--CTTCCCCCTTSSCCSCCEE
T ss_pred hhh---hccccccccccccccccccchhhhccccccccccCCeeeechhhHHHhccCCC--CCccccccccccccccccc
Confidence 655 67899999999999999999999999999999999999999999999999863 2211111 112345799
Q ss_pred EEecCcccccccCccceEEEEEcCCchh-HHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHH
Q psy14428 379 LAQSFSKNMGLYGERVGTFSVLTPTSDE-TERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLK 457 (583)
Q Consensus 379 ~i~S~SK~~~l~GlRiG~lv~~~p~~~~-~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~ 457 (583)
+++||||.|++||+|+||+++ +++.. ...++....+..... .+++...|.++...+.+
T Consensus 244 ~~~s~SK~~~~~G~RvG~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------------------ 302 (412)
T d1bw0a_ 244 ILGGTAKNLVVPGWRLGWLLY--VDPHGNGPSFLEGLKRVGMLV-CGPCTVVQAALGEALLN------------------ 302 (412)
T ss_dssp EEEESTTTTSCGGGCCEEEEE--ECTTCSCHHHHHHHHHHHHHH-TCSCHHHHHHHHHHHHS------------------
T ss_pred cccccCccCccCCCCcccccc--cchhhcchhhhhhhccccccc-cCCchhhhhhccccccc------------------
Confidence 999999999999999999999 54210 023444444333322 33444444444333221
Q ss_pred HHHhhccCCCccchhhHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCCh
Q psy14428 458 ILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSA 536 (583)
Q Consensus 458 ~~~r~~~~~~p~~g~~i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~ 536 (583)
.+.++++++++++.++|+.+.+.|.+.. ++.+..|++|+|+|..++.
T Consensus 303 -----------------------------~~~~~~~~~~~~~~~~r~~~~~~l~~~~---g~~~~~p~gg~~l~~~~~~ 349 (412)
T d1bw0a_ 303 -----------------------------TPQEHLDQIVAKIEESAMYLYNHIGECI---GLAPTMPRGAMYLMSRIDL 349 (412)
T ss_dssp -----------------------------SCHHHHHHHHHHHHHHHHHHHHHHTTST---TEEECCCCBTTEEEEEECG
T ss_pred -----------------------------ccccccccccchhHHHHHHHHHHHHHhc---CceecCCCCceEEEEeCCh
Confidence 1123467788888999999999997742 2667889999999987764
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Probab=100.00 E-value=1.5e-41 Score=357.30 Aligned_cols=305 Identities=11% Similarity=0.075 Sum_probs=236.6
Q ss_pred CCCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCC
Q psy14428 160 DPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGIS 239 (583)
Q Consensus 160 ~~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G 239 (583)
..+.++|+|++|+|+.+ +++.+.+++.+.++++ .++|+ .|.++||++||+|+++++|+++++++|++ |+|
T Consensus 28 ~~g~~vi~l~~g~pdf~-----~p~~v~~al~~~~~~~-~~~Y~--~g~~~Lr~aia~~~~~~~g~~~~~~~I~v--t~G 97 (394)
T d1c7na_ 28 EVGNEVVPLSVADMEFK-----NPPELIEGLKKYLDET-VLGYT--GPTEEYKKTVKKWMKDRHQWDIQTDWIIN--TAG 97 (394)
T ss_dssp TCCTTCCCCCSSSCSSC-----CCHHHHHHHHHHHHHC-CCSSB--CCCHHHHHHHHHHHHHHHCCCCCGGGEEE--ESS
T ss_pred hcCCCeEEccCCCCCCC-----CCHHHHHHHHHHHhCC-CcCCC--CCCHHHHHHHHHHHHHhcCCCCCCcceEe--ecc
Confidence 45678999999999643 6688999988887664 56785 47899999999999999999999999999 999
Q ss_pred chhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCC-CCCCChhhHHHHHHcCCCCcEEEEeCC
Q psy14428 240 GSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNK-TNGLDFAGMMEDIKAMPERSILFLQTS 318 (583)
Q Consensus 240 ~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~-~~g~d~~~l~~~l~~~~~~~~~i~i~~ 318 (583)
+++++.++ +..+++|||.|++++|+|.++...+...|.+.+.++..+.+ .+.+|.+.++..+ ..++++++++||
T Consensus 98 ~~~al~~~---~~~~~~pgd~vi~~~p~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~--~~~~~~~i~l~~ 172 (394)
T d1c7na_ 98 VVPAVFNA---VREFTKPGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLS--KDKNNKALLFCS 172 (394)
T ss_dssp HHHHHHHH---HHHHCCTTCEEEECSSCCTHHHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHH--TCTTEEEEEEES
T ss_pred chhhhhhh---hccccccccccccccCcccchhhHHhhhhhcccccccccccccccchhhhhhhhh--ccccceEEEecc
Confidence 99999985 55678889999999999999999999999999998873222 2336777666655 256789999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHH-HHHhcCcEEEEecCcccccccCccceEE
Q psy14428 319 SHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRY-FAKEVGQLCLAQSFSKNMGLYGERVGTF 397 (583)
Q Consensus 319 p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~-~~~~~~~vi~i~S~SK~~~l~GlRiG~l 397 (583)
||||||.+++.+++++|+++|++++++||+||+|.++.+++. ..++... ..+..++++++.||||+|+++|+|+||+
T Consensus 173 P~NPTG~v~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~--~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~R~g~~ 250 (394)
T d1c7na_ 173 PHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGY--EHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNI 250 (394)
T ss_dssp SBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTC--CCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEE
T ss_pred cccccceeccHHHhhhhhccccccceeEeccccccccccCCc--cccchhhhhcccccceeecccccccccccccccccc
Confidence 999999999999999999999999999999999999999863 2222211 1234578999999999999999999999
Q ss_pred EEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHH
Q psy14428 398 SVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTE 477 (583)
Q Consensus 398 v~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~ 477 (583)
++ ++ +.+.+.+.+.......+++...|.+++.....
T Consensus 251 ~~--~~----~~i~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-------------------------------------- 286 (394)
T d1c7na_ 251 II--KN----PDIRERFTKSRDATSGMPFTTLGYKACEICYK-------------------------------------- 286 (394)
T ss_dssp EC--CC----HHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHH--------------------------------------
T ss_pred cc--cC----hhhhhhhhhhhhhccccccccccchhhhhhhc--------------------------------------
Confidence 99 75 46777777766555555544444443332211
Q ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCCh
Q psy14428 478 ILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSA 536 (583)
Q Consensus 478 ~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~ 536 (583)
...+..+++++.+.++|+.+.+.++..+ +| +.+..++||+|+|.+++.
T Consensus 287 ---------~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~-~~~~~p~g~~~~~~~~~~ 334 (394)
T d1c7na_ 287 ---------ECGKWLDGCIKVIDKNQRIVKDFFEVNH-PE-IKAPLIEGTYLQWIDFRA 334 (394)
T ss_dssp ---------HCHHHHHHHHHHHHHHHHHHHHHHHHHC-TT-SBCCCCSBSSEEEEECGG
T ss_pred ---------chhhhhcccccccchhhhhhhhhhhccc-cc-eeecCCCceeEEEEECCC
Confidence 0112244555566677777777777654 22 566789999999987754
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2e-41 Score=355.60 Aligned_cols=312 Identities=14% Similarity=0.095 Sum_probs=246.0
Q ss_pred chhhHhhccccc--cCCCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCC
Q psy14428 147 IKPLKQQLKGFN--KDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDF 224 (583)
Q Consensus 147 ~~~i~~l~~~~~--~~~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g 224 (583)
+++|+++...+. +..+.++|+|+.|+|+.+ +++.+.+++.+... ..++|++..|.++||++||+|+.+.+|
T Consensus 10 ~~~i~~l~~~a~~~~~~g~~vi~l~~G~p~~~-----~p~~~~~al~~~~~--~~~~Y~~~~G~~~LR~aia~~~~~~~g 82 (389)
T d2gb3a1 10 ESPIRKLVPFAEMAKKRGVRIHHLNIGQPDLK-----TPEVFFERIYENKP--EVVYYSHSAGIWELREAFASYYKRRQR 82 (389)
T ss_dssp CCTTGGGHHHHHHHHHTTCEEEECSSCCCCSC-----CCTHHHHHHHHTCC--SSCCCCCTTCCHHHHHHHHHHHHHTSC
T ss_pred CCHHHHHHHHHHHHHHcCCCEEECCCCCCCCC-----CCHHHHHHHHhcCC--CCCCCCCCcCCHHHHHHHHHHHHHhcC
Confidence 456666644222 235668899999999732 45778888776543 367899999999999999999999999
Q ss_pred CCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHH
Q psy14428 225 PAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDI 304 (583)
Q Consensus 225 ~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l 304 (583)
+.+++++|++ |+|+++++.++ +..++++||.|++++|+|+.+...++..|++++.++. ++++...+.+.+...
T Consensus 83 ~~~~~~~I~i--t~G~~~~l~~~---~~~l~~~gd~V~i~~P~y~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~- 155 (389)
T d2gb3a1 83 VDVKPENVLV--TNGGSEAILFS---FAVIANPGDEILVLEPFYANYNAFAKIAGVKLIPVTR-RMEEGFAIPQNLESF- 155 (389)
T ss_dssp CCCCGGGEEE--ESHHHHHHHHH---HHHHCCTTCEEEEEESCCTHHHHHHHHHTCEEEEEEC-CGGGTSCCCTTGGGG-
T ss_pred CCcccceEEe--ccccccccccc---ccccccCCCeEEEeCCCCccccccccccCcccccccc-ccccccchhhhhhhh-
Confidence 9999999999 99999999984 5667788999999999999999999999999999998 444334444333332
Q ss_pred HcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCc
Q psy14428 305 KAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFS 384 (583)
Q Consensus 305 ~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~S 384 (583)
..+++++++++|||||||.++|.+++++|+++|++++++||+||+|.++.+++. ..... ....++++++.|+|
T Consensus 156 --~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~--~~~~~---~~~~~~~~v~~s~s 228 (389)
T d2gb3a1 156 --INERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGE--FASAL---SIESDKVVVIDSVS 228 (389)
T ss_dssp --CCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSC--CCCGG---GSCCTTEEEEEEST
T ss_pred --cccCccEEEeCCCCccccccchHHHHHHHHhhcccCCEEEEEeccccccccccc--ccccc---cccccccccccccc
Confidence 367889999999999999999999999999999999999999999999999862 22222 23457899999999
Q ss_pred ccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhcc
Q psy14428 385 KNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFY 464 (583)
Q Consensus 385 K~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~ 464 (583)
|.+++||+|+||+++ ++ +.+++.+.. ......+++.+.|.++..++...
T Consensus 229 K~~~~~GlRiG~~~~--~~----~~i~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~------------------------ 277 (389)
T d2gb3a1 229 KKFSACGARVGCLIT--RN----EELISHAMK-LAQGRLAPPLLEQIGSVGLLNLD------------------------ 277 (389)
T ss_dssp TTTTCGGGCCEEEEC--SC----HHHHHHHHH-HHHHSCCCCHHHHHHHHHHHTCC------------------------
T ss_pred ccccCcccceeeeec--cc----hhHHHHHhh-hhhcccccccccccccccccccc------------------------
Confidence 999999999999999 75 244444443 34456677778887777776542
Q ss_pred CCCccchhhHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCChh
Q psy14428 465 SNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSAS 537 (583)
Q Consensus 465 ~~~p~~g~~i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~~ 537 (583)
.+++++++++++++|+.+.+.|++.+. ..+..|++|+|.|..++..
T Consensus 278 ------------------------~~~~~~~~~~~~~~~~~~~~~L~~~~~---~~~~~p~~g~~~~~~lp~~ 323 (389)
T d2gb3a1 278 ------------------------DSFFDFVRETYRERVETVLKKLEEHGL---KRFTKPSGAFYITAELPVE 323 (389)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHHHHHHHHHTTC---CCBCCCSBSSEEEEECSSS
T ss_pred ------------------------chhcccccccccccchhhhhhhhhhcc---ccccCCCceEEEEEeCCCC
Confidence 123566777788999999999998752 3456789999999888643
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=100.00 E-value=5.2e-40 Score=349.24 Aligned_cols=307 Identities=15% Similarity=0.186 Sum_probs=237.2
Q ss_pred CCCC-CccccCCccccCCCCCCCCChHHHHHHHHHhcc----------CCCCCCCCCCCCHHHHHHHHHHHhCCCC--CC
Q psy14428 160 DPHP-KKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEK----------NLDHEYANIGGDAKFCKLAAQLAYGEDF--PA 226 (583)
Q Consensus 160 ~~~~-~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~----------~~~~~Y~~~~G~~~Lr~aia~~~~~~~g--~~ 226 (583)
..+| +.|+|+++++. ...+.+.+.+.+.... ....+|+++.|.++||++||+|+++++| +.
T Consensus 32 ~~np~G~i~l~~aen~------l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~ 105 (428)
T d1iaya_ 32 LKNPNGVIQMGLAENQ------LCLDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVR 105 (428)
T ss_dssp SSSTTSBEECSSCCCC------SSHHHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSC
T ss_pred cCCCCceEEeecccCc------cchHHHHHHHHhCCchhhhHhHhhhCHHhccCcCCcchHHHHHHHHHHHHHHhCCCCC
Confidence 3455 47899998762 1234444433332111 0134699999999999999999998877 45
Q ss_pred CCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhh-cCCeEEEEecccCCCCCCChhhHHHHHH
Q psy14428 227 FKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTD-SRLNVGAYRYFDNKTNGLDFAGMMEDIK 305 (583)
Q Consensus 227 ~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~-~G~~~~~v~~~d~~~~g~d~~~l~~~l~ 305 (583)
+++++|++ |+|+++++.++ +..++.+||.|++++|+|+.+...+.. .|++++++++...+++.+|++.++.+++
T Consensus 106 ~~~e~Ivi--t~G~~~al~~~---~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~~~~~~~ 180 (428)
T d1iaya_ 106 FDPERVVM--AGGATGANETI---IFCLADPGDAFLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYE 180 (428)
T ss_dssp CCTTSCEE--EEHHHHHHHHH---HHHHCCTTCEEEEESSCCTTHHHHTTTTTCCEEEEECCCTTTTTCCCHHHHHHHHH
T ss_pred CChhhEEE--cCCHHHHHHHH---HHHhCCCCCEEEEccCCchHHHHHHHHhcCCeEEEeecccccccccccccccchhh
Confidence 67999999 99999999985 556788899999999999999888775 5899999998333457889888876553
Q ss_pred c---CCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHH-------hcC
Q psy14428 306 A---MPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAK-------EVG 375 (583)
Q Consensus 306 ~---~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~-------~~~ 375 (583)
. ...++++++++|||||||.+++.+++++|+++|++|+++||+||+|.++.|++ ..+.++.++.+ ..+
T Consensus 181 ~~~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~vI~De~Y~~~~~~~--~~~~s~~~~~~~~~~~~~~~~ 258 (428)
T d1iaya_ 181 NAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDT--PQFVSIAEILDEQEMTYCNKD 258 (428)
T ss_dssp HHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSS--SCCCCHHHHHTSGGGTTSCTT
T ss_pred hhhccCCCceEEEEccCCCcccccccccccchhheeeccCcEEEEecccccccccCc--ccccccccccchhhccccccc
Confidence 3 46788999999999999999999999999999999999999999999999987 34455555432 246
Q ss_pred cEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHH
Q psy14428 376 QLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQ 455 (583)
Q Consensus 376 ~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~ 455 (583)
++++++||||+|+++|+|+||+++ ++ +.+++.+..... ...++...|.+++..+.+..
T Consensus 259 ~vi~~~s~SK~~~~~GlRiG~~~~--~~----~~l~~~~~~~~~--~~~~~~~~~~~~~a~l~~~~-------------- 316 (428)
T d1iaya_ 259 LVHIVYSLSKDMGLPGFRVGIIYS--FN----DDVVNCARKMSS--FGLVSTQTQYFLAAMLSDEK-------------- 316 (428)
T ss_dssp SEEEEEESTTTSSCGGGCEEEEEE--SC----HHHHHHHHHHHT--TSCCCHHHHHHHHHHTTCHH--------------
T ss_pred eEEEEecCCCcccCCCcccccccc--cc----cchhhhhhhhhc--ccccccccccchhhhhhhhc--------------
Confidence 899999999999999999999999 65 356666655432 34567777777766665421
Q ss_pred HHHHHhhccCCCccchhhHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCC
Q psy14428 456 LKILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLS 535 (583)
Q Consensus 456 l~~~~r~~~~~~p~~g~~i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~ 535 (583)
...+.++++++++.++|+.+.+.|+..+ +.+..+++|+|+|.+++
T Consensus 317 -------------------------------~~~~~~~~~~~~l~~r~~~~~~~L~~~g----i~~~~p~gg~f~w~~l~ 361 (428)
T d1iaya_ 317 -------------------------------FVDNFLRESAMRLGKRHKHFTNGLEVVG----IKCLKNNAGLFCWMDLR 361 (428)
T ss_dssp -------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHTT----CCBCCCSSSSEEEEECG
T ss_pred -------------------------------cccccccccccccchhHHHHHHHHHhCC----CEEecCCcceEEEEECc
Confidence 1122356677788889999999998765 56778999999998875
Q ss_pred h
Q psy14428 536 A 536 (583)
Q Consensus 536 ~ 536 (583)
.
T Consensus 362 ~ 362 (428)
T d1iaya_ 362 P 362 (428)
T ss_dssp G
T ss_pred c
Confidence 4
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Probab=100.00 E-value=3e-40 Score=351.38 Aligned_cols=359 Identities=14% Similarity=0.104 Sum_probs=251.8
Q ss_pred CCCCC-ccccCCccccCCCCCCCCChHHHHHHHHHhcc-----------CCCCCCCCCCCCHHHHHHHHHHHhCCCC--C
Q psy14428 160 DPHPK-KMNLGVGAYRGEDGKPYVLPSVKEAERRIYEK-----------NLDHEYANIGGDAKFCKLAAQLAYGEDF--P 225 (583)
Q Consensus 160 ~~~~~-~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~-----------~~~~~Y~~~~G~~~Lr~aia~~~~~~~g--~ 225 (583)
..||+ .|+|++++.. ...+.+.+-+.+-... ....+|+++.|.++||++||+|+++.+| +
T Consensus 32 ~~np~G~i~l~~~en~------l~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aiA~~l~~~~~~~~ 105 (431)
T d1m7ya_ 32 VHNTNGIIQMGLAENQ------LCFDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKV 105 (431)
T ss_dssp SSCTTSBEECSSCCCC------SCHHHHHHHHHHCCTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSS
T ss_pred cCCCCcEEEeeccccc------ccHHHHHHHHHhCCchhhhhhhhhhccHHhcCCcCCcCcHHHHHHHHHHHHHHhCCCC
Confidence 34554 6999988863 1234444443321100 0124699999999999999999998776 5
Q ss_pred CCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhh-cCCeEEEEecccCCCCCCChhhHHHHH
Q psy14428 226 AFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTD-SRLNVGAYRYFDNKTNGLDFAGMMEDI 304 (583)
Q Consensus 226 ~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~-~G~~~~~v~~~d~~~~g~d~~~l~~~l 304 (583)
.++|++|++ |+|+++++.++ +..++.|||+|++++|+|+.+...++. .|++++++++..++++.+|++.+++.+
T Consensus 106 ~~~pe~I~i--t~G~~~al~~~---~~~l~~pGd~Vlv~~P~y~~~~~~~~~~~g~~~v~v~~~~~~~~~l~~~~~~~~~ 180 (431)
T d1m7ya_ 106 TFDPNHLVL--TAGATSANETF---IFCLADPGEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAY 180 (431)
T ss_dssp CCCGGGEEE--EEHHHHHHHHH---HHHHCCTTCEEEEEESCCTTHHHHTTTTTCCEEEEEECCGGGTSCCCHHHHHHHH
T ss_pred CCCcceEEE--CCCHHHHHHHH---HHHhcCCCCEEEEeCCCchhHHHHHHHhcCceeccccccchhcccccHHHhhhhh
Confidence 678999999 99999999995 556778899999999999999988875 589999999843345778988888777
Q ss_pred Hc---CCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHH---------
Q psy14428 305 KA---MPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAK--------- 372 (583)
Q Consensus 305 ~~---~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~--------- 372 (583)
.+ ...++++++++|||||||.+++.+++++|+++|++++++||+||+|.++.|++ ..+.++.++..
T Consensus 181 ~~~~~~~~~~~~i~~~nP~NPtG~~~s~~~l~~i~~~a~~~~~~vI~De~Y~~~~~~~--~~~~s~~~~~~~~~~~~~~~ 258 (431)
T d1m7ya_ 181 QEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSS--PSFISVMEVLKDRNCDENSE 258 (431)
T ss_dssp HHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSS--SCCCCHHHHTTTTTCSSSSS
T ss_pred hhhhhccCcceEEEecCccccccccccccccccccccccccCcceeecccccccccCC--CCCCCHHHHhhhcccccccc
Confidence 54 35678999999999999999999999999999999999999999999999987 34455555432
Q ss_pred hcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCC-hhhhhhhhhHHH
Q psy14428 373 EVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSD-PKLKAQCDETER 451 (583)
Q Consensus 373 ~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~-~~~~~~~~~~~~ 451 (583)
..+++|+++||||.||++|+|+||+++ ++ +++.+...... ...+++...|.+++..+.+ +..++++.+.+.
T Consensus 259 ~~~~vi~~~s~SK~~~~~G~RiG~~~~--~~-----~~i~~~~~~~~-~~~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~ 330 (431)
T d1m7ya_ 259 VWQRVHVVYSLSKDLGLPGFRVGAIYS--ND-----DMVVAAATKMS-SFGLVSSQTQHLLSAMLSDKKLTKNYIAENHK 330 (431)
T ss_dssp GGGGEEEEEESSSSSCCGGGCEEEEEE--SC-----HHHHHHHHHHG-GGSCCCHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred cCceEEEEecCcccccCCCCccceecc--ch-----hhhHHHHHHHh-ccccccccccchhhhhhccchhhhhhhhhhhh
Confidence 235899999999999999999999999 74 45555444333 3456666777777666654 445566666665
Q ss_pred HHHHHHHHH----h-hccC-CCccchhhHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCCC-ccc
Q psy14428 452 IMSQLKILI----R-GFYS-NPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILD---KGSKKN-WDH 521 (583)
Q Consensus 452 ~~~~l~~~~----r-~~~~-~~p~~g~~i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~---~~~pg~-~~~ 521 (583)
.++++++.+ + .+++ .+|.+|.|+|..+...... ..+ ....++..+.|++ ...||+ |..
T Consensus 331 ~~~~~~~~l~~~L~~~gi~~~~p~gg~f~w~~l~~~~~~-~~~-----------~~~~~l~~~ll~~~gV~v~PG~~F~~ 398 (431)
T d1m7ya_ 331 RLKQRQKKLVSGLQKSGISCLNGNAGLFCWVDMRHLLRS-NTF-----------EAEMELWKKIVYEVHLNISPGSSCHC 398 (431)
T ss_dssp HHHHHHHHHHHHHHTTTCEECCCCSSSEEEEECGGGSSS-SSH-----------HHHHHHHHHHHHTSCEECEEGGGGTC
T ss_pred hhhhhhhhhhhhhhcCCcEEecCCceeEEEEECcccccc-Ccc-----------cCHHHHHHHHHHHCCEEEEeccccCC
Confidence 555554432 2 2344 5677888998866421000 001 1122233333444 245775 333
Q ss_pred ccccccceeecCCChhhhhhhhhhhhHHHHH
Q psy14428 522 ITNQKGMFCYTGLSASQGMSNRISSIREELK 552 (583)
Q Consensus 522 ~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~ 552 (583)
..++.-|++|+..+++++++ .+.++++-++
T Consensus 399 ~~~~~~Ri~~a~~~e~~l~~-al~rL~~~l~ 428 (431)
T d1m7ya_ 399 TEPGWFRVCFANLPERTLDL-AMQRLKAFVG 428 (431)
T ss_dssp SSTTEEEEECSSSCHHHHHH-HHHHHHHHHH
T ss_pred CCCCEEEEEeCcCCHHHHHH-HHHHHHHHHH
Confidence 34445577787777776655 4555555443
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6.3e-39 Score=333.00 Aligned_cols=302 Identities=12% Similarity=0.041 Sum_probs=229.4
Q ss_pred ccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHH
Q psy14428 165 KMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSL 244 (583)
Q Consensus 165 ~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al 244 (583)
+|+|++|++|.+ +++.+.+++.+.+.++ .++|++..| ++||++|++++.+++|+++++++|++ |+|+++++
T Consensus 1 ~~~~~~~~~df~-----~p~~i~eal~~~~~~~-~~~Y~~~~g-~~lr~~ia~~~~~~~g~~~~~~~i~i--t~G~~~~l 71 (361)
T d1d2fa_ 1 LLPFTISDMDFA-----TAPCIIEALNQRLMHG-VFGYSRWKN-DEFLAAIAHWFSTQHYTAIDSQTVVY--GPSVIYMV 71 (361)
T ss_dssp CEECCSSSCSSC-----CCHHHHHHHHHHHTTC-CCCCCCSCC-HHHHHHHHHHHHHHSCCCCCGGGEEE--ESCHHHHH
T ss_pred CcCcCCCCCCCC-----CCHHHHHHHHHHHhCC-CCCCCCCCC-HHHHHHHHHHHHHHhCCCCCcceEEE--eCCHHHHH
Confidence 478999999743 5688999998888664 568999998 78999999999999999999999999 99999999
Q ss_pred HHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccC-CCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCC
Q psy14428 245 RVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDN-KTNGLDFAGMMEDIKAMPERSILFLQTSSHNPT 323 (583)
Q Consensus 245 ~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~-~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPT 323 (583)
..+ +..++++||+|++++|+|+.|..+++..|.+++.+++... +++.+|++.+++.+. .+++++++++||||||
T Consensus 72 ~~~---~~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~~~~~~~--~~~~~~i~l~~p~NPT 146 (361)
T d1d2fa_ 72 SEL---IRQWSETGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLA--KPECKIMLLCSPQNPT 146 (361)
T ss_dssp HHH---HHHSSCTTCEEEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHT--STTEEEEEEESSCTTT
T ss_pred HHH---hhhccccccccccccccccchhHHHHhhcceEEeecccccccccccccccchhhcc--cCCceeEEeccccccc
Confidence 984 5667788999999999999999999999999999987322 234479999888873 4678899999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCC
Q psy14428 324 GVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPT 403 (583)
Q Consensus 324 G~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~ 403 (583)
|.+++.+++++|+++|++++++||+||+|.+|.+++. ...++.. ...++++++.|+||+++++|+|+||+++ ++
T Consensus 147 G~~~s~~~~~~i~~~~~~~~~~lI~De~y~~~~~~~~--~~~~~~~--~~~~~~v~~~s~SK~~~~~g~R~g~~~~--~~ 220 (361)
T d1d2fa_ 147 GKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQ--PHIPWSN--VARGDWALLTSGSKSFNIPALTGAYGII--EN 220 (361)
T ss_dssp CCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSS--CCCCGGG--TCCSSEEEEECSHHHHTCGGGCCEEEEE--CS
T ss_pred ccccchhhhhhhhhhhhhhheeeeecccccccccccc--ccccccc--ccccccccccccccccccccccceeeec--ch
Confidence 9999999999999999999999999999999998763 2333332 2356899999999999999999999998 65
Q ss_pred chhHHHHHHHHHHHHhccccCC-ChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHhcCCh
Q psy14428 404 SDETERIMSQLKILIRGFYSNP-PIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDP 482 (583)
Q Consensus 404 ~~~~~~li~~l~~~~~~~~~~~-s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~l~~~ 482 (583)
+. ...+.+.........+. +...|.++...+..
T Consensus 221 ~~---~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~------------------------------------------- 254 (361)
T d1d2fa_ 221 SS---SRDAYLSALKGRDGLSSPSVLALTAHIAAYQQ------------------------------------------- 254 (361)
T ss_dssp HH---HHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHH-------------------------------------------
T ss_pred hH---HHHHHhhhcccccccccchhhhHHHHHHHhhc-------------------------------------------
Confidence 32 23333333333332222 22222222111110
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCChhhh
Q psy14428 483 KLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSASQG 539 (583)
Q Consensus 483 ~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~~~~ 539 (583)
.....++++..+.++++.+.+.+.+.+. .+.+..|++|+|.|..++...+
T Consensus 255 -----~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~~~~~p~gg~~~~~~l~~~~~ 304 (361)
T d1d2fa_ 255 -----GAPWLDALRIYLKDNLTYIADKMNAAFP--ELNWQIPQSTYLAWLDLRPLNI 304 (361)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHCS--SCCCCCCSBCSEEEEECGGGCC
T ss_pred -----cchhhhcccccchhhHHHHHHHhhhhcc--cccccccCceeEEEEEccCCCC
Confidence 0112345556667777777777766542 2556779999999987754433
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=4.5e-39 Score=335.02 Aligned_cols=294 Identities=18% Similarity=0.158 Sum_probs=246.1
Q ss_pred CCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchh
Q psy14428 163 PKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSG 242 (583)
Q Consensus 163 ~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~ 242 (583)
.+.|||+.|.|+.+ +++.+.+++++.+.. ..+|+++.|.++||++||++++ +++++|++ |+|+++
T Consensus 25 ~~~I~ls~g~p~~~-----~p~~i~~al~~~l~~--~~~Y~~~~G~~elr~aiA~~~~------~~~~~Iii--t~G~~~ 89 (368)
T d1v2da_ 25 LGAVNLGQGFPSNP-----PPPFLLEAVRRALGR--QDQYAPPAGLPALREALAEEFA------VEPESVVV--TSGATE 89 (368)
T ss_dssp HTCEECCCCSCSSC-----CCHHHHHHHHHHTTT--SCSCCCTTCCHHHHHHHHHHHT------SCGGGEEE--ESSHHH
T ss_pred CCCEEecCCCCCCC-----CCHHHHHHHHHHhhc--ccCCCCCcCCHHHHHHHHhhcc------cCCcceee--ccchHH
Confidence 35799999998632 568899998887754 5689999999999999999985 67899999 999999
Q ss_pred HHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecc-cCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCC
Q psy14428 243 SLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYF-DNKTNGLDFAGMMEDIKAMPERSILFLQTSSHN 321 (583)
Q Consensus 243 al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~-d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~N 321 (583)
++.++ +..++.+||.|++++|+|+.+...++..|.+++.+++. +.+.+++|++.+++.+ .+.+++++++||||
T Consensus 90 al~~~---~~~l~~~~d~v~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~---~~~~~~i~~~~p~N 163 (368)
T d1v2da_ 90 ALYVL---LQSLVGPGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKAL---TPRTRALLLNTPMN 163 (368)
T ss_dssp HHHHH---HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHTTC---CTTEEEEEEESSCT
T ss_pred HHHHH---hhccccccccccccCCcchhhhhHHHhcCCccceeccccccccccCCHHHHHHhh---ccCceEEEEcCCCC
Confidence 99985 55577789999999999999999999999999888872 1234678998887766 67888999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEc
Q psy14428 322 PTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLT 401 (583)
Q Consensus 322 PTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~ 401 (583)
|||.+++.+++++|+++|++++++||+||+|.++.+... .+... ....++++++.|+||.++++|+|+||+++
T Consensus 164 PtG~~~~~~~l~~l~~~a~~~~i~ii~D~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~sk~~~~~G~R~g~~~~-- 236 (368)
T d1v2da_ 164 PTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGER---PRRLR--EFAPERTFTVGSAGKRLEATGYRVGWIVG-- 236 (368)
T ss_dssp TTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSC---CCCHH--HHCTTTEEEEEEHHHHTTCGGGCCEEEEC--
T ss_pred cccccCCHHHHHHHHHHHHHcCCeeeechhhhhhccccc---ccccc--cccccccceeecccccccccccccccccc--
Confidence 999999999999999999999999999999998877652 22222 23457899999999999999999999998
Q ss_pred CCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHhcCC
Q psy14428 402 PTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEILSD 481 (583)
Q Consensus 402 p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~l~~ 481 (583)
+ +++++.+.+.......+++.+.|.+++.++....
T Consensus 237 ~-----~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~---------------------------------------- 271 (368)
T d1v2da_ 237 P-----KEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLAR---------------------------------------- 271 (368)
T ss_dssp C-----TTTHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHH----------------------------------------
T ss_pred c-----ccccchhhhhhhcccccccccccccccccccccc----------------------------------------
Confidence 7 4789999998888899999999999888775422
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCChhhh
Q psy14428 482 PKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSASQG 539 (583)
Q Consensus 482 ~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~~~~ 539 (583)
+.++++++++.++++++.+.+.|++.+ +.+..+++|+|+|..++..+.
T Consensus 272 ------~~~~~~~~~~~~~~~~~~l~~~l~~~g----~~~~~p~g~~~~~~~l~~~~~ 319 (368)
T d1v2da_ 272 ------REGFYEALREGYRRRRDLLAGGLRAMG----LRVYVPEGTYFLMAELPGWDA 319 (368)
T ss_dssp ------HTTHHHHHHHHHHHHHHHHHHHHHHTT----CCEECCSBSSEEEEECTTCCH
T ss_pred ------chhhHHHHHHHHHHhhhhhhhhHHhcC----cEEecCCceeEEEEeCCccHH
Confidence 223366677778899999999999875 667889999999998876443
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=4.5e-35 Score=300.66 Aligned_cols=277 Identities=14% Similarity=0.149 Sum_probs=214.8
Q ss_pred CCCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCC
Q psy14428 160 DPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGIS 239 (583)
Q Consensus 160 ~~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G 239 (583)
..+.+.|.|+.|+++. + +++.+.+++.+.+... .++|.|..|.++||++||+|++.++ +++++|++ |+|
T Consensus 16 ~~~~d~~~l~~~enp~--~---~p~~i~~~~~~~~~~~-~~~~yp~~g~~~Lr~aia~~~~~~~---v~~d~I~i--t~G 84 (334)
T d2f8ja1 16 TEKRDKTYLALNENPF--P---FPEDLVDEVFRRLNSD-ALRIYYDSPDEELIEKILSYLDTDF---LSKNNVSV--GNG 84 (334)
T ss_dssp CCCCCSEECSSCCCSS--C---CCHHHHHHHHHHCCTT-GGGSCCCSSCHHHHHHHHHHHTCSS---CCGGGEEE--EEH
T ss_pred ccCCCceEEECCCCCC--C---CCHHHHHHHHHHhhcc-hhcCCCCCCcHHHHHHHHHHhcccC---CCcceEEe--cCc
Confidence 3567899999998642 2 4577777777666553 4566688899999999999997653 68999999 999
Q ss_pred chhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCC
Q psy14428 240 GSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSS 319 (583)
Q Consensus 240 ~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p 319 (583)
++++++++ +.. ||+|++++|+|..|...++..|++++.+|+ +++. ..+ +...++++++++|||
T Consensus 85 ~~~~l~~l---~~~----~d~v~i~~P~y~~~~~~~~~~g~~~v~v~~-~~~~-~~~--------~~~~~~~~~l~l~nP 147 (334)
T d2f8ja1 85 ADEIIYVM---MLM----FDRSVFFPPTYSCYRIFAKAVGAKFLEVPL-TKDL-RIP--------EVNVGEGDVVFIPNP 147 (334)
T ss_dssp HHHHHHHH---HHH----SSEEEECSSCCHHHHHHHHHHTCCEEECCC-CTTS-CCC--------CCCCCTTEEEEEESS
T ss_pred chhHHHHH---hhh----ccccccccccccccccchhccCCccccccc-cccc-ccc--------ccccccceEEEeccc
Confidence 99999874 333 799999999999999999999999999999 5532 221 112567889999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEE
Q psy14428 320 HNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSV 399 (583)
Q Consensus 320 ~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~ 399 (583)
|||||.+++++++.++ .+++++||+||+|.++.+... ..+ ....+++|+++||||+++++|+|+||+++
T Consensus 148 ~NPtG~~~s~~~l~~~----~~~~~~ii~Dd~~~~~~~~~~---~~~----~~~~~~~i~~~S~SK~~~~~G~R~G~~~~ 216 (334)
T d2f8ja1 148 NNPTGHVFEREEIERI----LKTGAFVALDEAYYEFHGESY---VDF----LKKYENLAVIRTFSKAFSLAAQRVGYVVA 216 (334)
T ss_dssp CTTTCCCCCHHHHHHH----HTTTCEEEEECTTGGGTCCCC---GGG----GGTCSSEEEEEESTTTSSCTTTCEEEEEE
T ss_pred ccccceeecHHHhhcc----ccceeEEeecccchhhccccc---ccc----cccCceEEEEecCccccchhhhhhhhccc
Confidence 9999999998877553 568999999999988876541 111 23468999999999999999999999999
Q ss_pred EcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHhc
Q psy14428 400 LTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEIL 479 (583)
Q Consensus 400 ~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~l 479 (583)
| +++++++...+. ..++|.++|.++..++.+.
T Consensus 217 --~-----~~~i~~l~~~~~--~~~~s~~~~~~a~~~l~~~--------------------------------------- 248 (334)
T d2f8ja1 217 --S-----EKFIDAYNRVRL--PFNVSYVSQMFAKVALDHR--------------------------------------- 248 (334)
T ss_dssp --C-----HHHHHHHHHHSC--TTCSCHHHHHHHHHHHHTH---------------------------------------
T ss_pred --c-----hHHHHHHHHhhc--ccccchhhhhhcccccccc---------------------------------------
Confidence 7 689999988754 4568888888877766542
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCChhh
Q psy14428 480 SDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSASQ 538 (583)
Q Consensus 480 ~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~~~ 538 (583)
++++++++.+.++|+.+.+.|++++ +++..++++ |.|..++...
T Consensus 249 ----------~~~~~~~~~~~~~r~~l~~~L~~~g----~~~~~~~g~-f~~~~~~~~~ 292 (334)
T d2f8ja1 249 ----------EIFEERTKFIVEERERMKSALREMG----YRITDSRGN-FVFVFMEKEE 292 (334)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHHHHHHT----CEECCCCSS-EEEEECCHHH
T ss_pred ----------cchhhHHHHHHHHHHHHHHHHHHCC----CeECCCCce-EEEEECCCCC
Confidence 1234455667788888999998875 556666655 6787776543
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Probab=100.00 E-value=2.5e-34 Score=297.52 Aligned_cols=284 Identities=12% Similarity=0.081 Sum_probs=214.8
Q ss_pred CCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchh
Q psy14428 163 PKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSG 242 (583)
Q Consensus 163 ~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~ 242 (583)
.+.|||+.|.+. ++ +++.+.+++.+...+ ...| |..|.++||++||++++ +++++|++ |+|+++
T Consensus 22 ~~~idls~~~np--~~---~p~~~~~a~~~~~~~--~~~Y-p~~~~~~Lr~aia~~~~------v~~~~I~~--~~g~~~ 85 (355)
T d1lc5a_ 22 DQLLDFSANINP--LG---MPVSVKRALIDNLDC--IERY-PDADYFHLHQALARHHQ------VPASWILA--GNGETE 85 (355)
T ss_dssp GGSEECSSCCCT--TC---CCHHHHHHHHHTGGG--GGSC-CCTTCHHHHHHHHHHHT------SCGGGEEE--ESSHHH
T ss_pred hheEEccCCCCC--CC---CCHHHHHHHHHHHHH--hccC-CCCChHHHHHHHHHHhC------CCHHHEEe--cccHHH
Confidence 368999998753 22 457788888776643 4557 55677999999999984 67899999 999999
Q ss_pred HHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCC
Q psy14428 243 SLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNP 322 (583)
Q Consensus 243 al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NP 322 (583)
++.++ +..+. ++.++++.|+|..|.......+++++.+|+..++++.++ +.+++.+ .+++++++++|||||
T Consensus 86 ~~~~~---~~~~~--~~~~~v~~p~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~---~~~~~~v~l~nP~NP 156 (355)
T d1lc5a_ 86 SIFTV---ASGLK--PRRAMIVTPGFAEYGRALAQSGCEIRRWSLREADGWQLT-DAILEAL---TPDLDCLFLCTPNNP 156 (355)
T ss_dssp HHHHH---HHHHC--CSEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCC-TTHHHHC---CTTCCEEEEESSCTT
T ss_pred HHHHH---Hhhhc--cccccccCCccceeccccccccccceeeeeeccCCccce-eeeeecc---ccccceeeeecccCc
Confidence 98875 33333 567778899999999999999999999998433333333 3344433 678899999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcC
Q psy14428 323 TGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTP 402 (583)
Q Consensus 323 TG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p 402 (583)
||.+++.+++++|+++|++++++||+||+|.+|.+++. ..... ....+++|+++||||.||+||+|+||+++ |
T Consensus 157 tG~~~~~e~l~~i~~~a~~~~~~li~De~y~~~~~~~~--~~~~~---~~~~~~~i~~~S~SK~~~l~GlR~G~~i~--~ 229 (355)
T d1lc5a_ 157 TGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHET--GFIPA---LKDNPHIWVLRSLTKFYAIPGLRLGYLVN--S 229 (355)
T ss_dssp TCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCC--CSGGG---CTTCTTEEEEEESTTTTTCTTTCCEEEEC--C
T ss_pred ccccchhhhhhhhhhhccccccccccccceeeeeeecc--ccccc---ccccccceeecccccccccccccccceec--c
Confidence 99999999999999999999999999999999987752 22221 24467999999999999999999999999 7
Q ss_pred CchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHhhccCCCccchhhHHHHhcCCh
Q psy14428 403 TSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDP 482 (583)
Q Consensus 403 ~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~p~~g~~i~~~~l~~~ 482 (583)
+ +.+++.+++. ....+.+.++|.++..++++..
T Consensus 230 ~----~~~~~~~~~~--~~~~~~~~~~~~~a~~~l~~~~----------------------------------------- 262 (355)
T d1lc5a_ 230 D----DAAMARMRRQ--QMPWSVNALAALAGEVALQDSA----------------------------------------- 262 (355)
T ss_dssp C----HHHHHHHHHH--SCTTCSCHHHHHHHHHGGGCHH-----------------------------------------
T ss_pred c----hhhhHHHHhh--cCCccccccccccccccccccc-----------------------------------------
Confidence 5 2455555443 2345778889998888887621
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCChh
Q psy14428 483 KLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSAS 537 (583)
Q Consensus 483 ~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~~ 537 (583)
++++.+++++++++.+.+.|.+.. .+. ..|.+|+|.|.+++.+
T Consensus 263 --------~~~~~~~~~~~~~~~~~~~l~~~~---~~~-~~p~~~~f~~~~~~~~ 305 (355)
T d1lc5a_ 263 --------WQQATWHWLREEGARFYQALCQLP---LLT-VYPGRANYLLLRCERE 305 (355)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHTST---TEE-ECCCSSSEEEEEESCT
T ss_pred --------hhHHHHHHHHHHHHHHHHHHhhcC---CcE-ECCCCCEEEEEECCCC
Confidence 133345556677778888888753 233 3577889999877653
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.6e-33 Score=291.28 Aligned_cols=248 Identities=17% Similarity=0.175 Sum_probs=194.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCC-EEEEcCCCChhhHHHHhh
Q psy14428 199 DHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVK-TVYFPTPTWNGHVRFCTD 277 (583)
Q Consensus 199 ~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd-~Vlv~~P~y~~~~~~~~~ 277 (583)
...| |..+..+||+++|++++ +++++|++ |+|+++++.++ +..++.||| .|++++|+|..|...++.
T Consensus 50 l~rY-Pd~~~~~Lr~~ia~~~g------v~pe~I~i--t~Gs~eai~~~---~~~~~~pgd~~Vl~~~P~y~~~~~~~~~ 117 (354)
T d1fg7a_ 50 LNRY-PECQPKAVIENYAQYAG------VKPEQVLV--SRGADEGIELL---IRAFCEPGKDAILYCPPTYGMYSVSAET 117 (354)
T ss_dssp TTSC-CCSSCHHHHHHHHHHHT------SCGGGEEE--ESHHHHHHHHH---HHHHCCTTTCEEEECSSSCTHHHHHHHH
T ss_pred HhcC-CCCcHHHHHHHHHHHhC------CChHHeee--ccCchHHHHHH---HHHhhccccccccccccccccchhhhhc
Confidence 4567 44566899999999984 67999999 99999999995 566777798 688999999999999999
Q ss_pred cCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCC
Q psy14428 278 SRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTS 357 (583)
Q Consensus 278 ~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~ 357 (583)
.|.+++.++. + +++++|++.++.. ..+++++++||||||||.+++.++++.+.+.++ ++.++|+||+|.+|.+
T Consensus 118 ~g~~v~~~~~-~-~~~~~d~~~l~~~----~~~~~~v~~~~pnNPtG~~~~~~~~~~~~~~~~-~~~~~iidd~~~~f~~ 190 (354)
T d1fg7a_ 118 IGVECRTVPT-L-DNWQLDLQGISDK----LDGVKVVYVCSPNNPTGQLINPQDFRTLLELTR-GKAIVVADEAYIEFCP 190 (354)
T ss_dssp HTCEEEECCC-C-TTSCCCHHHHHTS----CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSG
T ss_pred cCceeecccc-c-cccccchhhhhhc----ccccceeeccCCCccceeEeeeccccccccccc-ccccccccccchhhcc
Confidence 9999999988 3 3588998887654 357899999999999999999999988888765 5778888999999876
Q ss_pred CCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHh
Q psy14428 358 GDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEIL 437 (583)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l 437 (583)
+. .... .....+++++++||||.||+||+|+||+++ + +++++++.+... ..+++.+.|.+++.++
T Consensus 191 ~~---~~~~---~~~~~~~~iv~~S~SK~~~laGlRiGy~i~--~-----~~~i~~l~~~~~--~~~~~~~~~~~a~~~~ 255 (354)
T d1fg7a_ 191 QA---SLAG---WLAEYPHLAILRTLSKAFALAGLRCGFTLA--N-----EEVINLLMKVIA--PYPLSTPVADIAAQAL 255 (354)
T ss_dssp GG---CSGG---GTTTCTTEEEEEESSSTTCCGGGCCEEEEE--C-----HHHHHHHHHHSC--SSCSCHHHHHHHHHHT
T ss_pred cc---ccch---hhcccccceEEeCCccccCCCccccccccc--c-----chhhhhhhhhcC--ccchhhHHHHHHHHHH
Confidence 54 1111 134578999999999999999999999999 7 689999987644 3467788888888888
Q ss_pred CChhhhhhhhhHHHHHHHHHHHHh---h--cc-CCCccchhhHHHHhcC
Q psy14428 438 SDPKLKAQCDETERIMSQLKILIR---G--FY-SNPPIHGARIVTEILS 480 (583)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~l~~~~r---~--~~-~~~p~~g~~i~~~~l~ 480 (583)
.+............+.+++..+.. . .. ...|++|+|+|+++.+
T Consensus 256 ~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~p~~~~f~~~~~~~ 304 (354)
T d1fg7a_ 256 SPQGIVAMRERVAQIIAEREYLIAALKEIPCVEQVFDSETNYILARFKA 304 (354)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCCSSSEEEEEETT
T ss_pred hhhccccccccchhhhhHHHHHHHHHHhCCCcceeCCCCceEEEEeCCC
Confidence 766554444444444444433322 1 12 3678899999988753
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Probab=99.95 E-value=1.4e-28 Score=258.28 Aligned_cols=230 Identities=13% Similarity=0.030 Sum_probs=173.8
Q ss_pred CCCccccCCccccCCCCCCCCChHHHHHHHHHhc--cC-CCCCCCCCCC----CHHHHHHHHHHHhCCCCCCCCCCCeEE
Q psy14428 162 HPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYE--KN-LDHEYANIGG----DAKFCKLAAQLAYGEDFPAFKDNRLAI 234 (583)
Q Consensus 162 ~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~--~~-~~~~Y~~~~G----~~~Lr~aia~~~~~~~g~~~~~~~I~i 234 (583)
..-.+|+..|+|.. ..+.+++......- .+ ..+.|.-..+ .++|+++|++++....+...+..+|++
T Consensus 55 ~~~~~~~~~gdp~~------~~~~w~~~~~~~~~~~~~~~~~sy~~~~~~~~~~~~L~~~i~~lh~~~gna~t~~~~Ivv 128 (425)
T d2hoxa1 55 QGCSADVASGDGLF------LEEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVF 128 (425)
T ss_dssp TTCCEECCSCCCGG------GHHHHTTSHHHHCEEECTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEE
T ss_pred CCceeeCCCCCCCC------CCHHHHhCcccceEEeecccccceecCCccccCCHHHHHHHHHHHhhhCCCCCCCCEEEE
Confidence 34568899898852 22334443322221 11 2345654432 289999999999876666666678999
Q ss_pred EecCCchhHHHHHHHHHHHh--------CCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHc
Q psy14428 235 VQGISGSGSLRVGTAFLERF--------YPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKA 306 (583)
Q Consensus 235 ~~t~G~~~al~l~~~~l~~~--------~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~ 306 (583)
++|++|+|+++ +..+ ..|||+|+++.|+|+.|....+..|.+.+.++. |.+.+++++
T Consensus 129 --G~Gsteli~~~---~~AL~~~~~~~~~~pg~~Vv~~~P~y~~Y~~~~~~~~~~~~~~~~--------D~~~~~~~~-- 193 (425)
T d2hoxa1 129 --GVGVTQLIHGL---VISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKGYVWAG--------NAANYVNVS-- 193 (425)
T ss_dssp --ESHHHHHHHHH---HHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCBTTEEEEE--------EGGGGTTCS--
T ss_pred --CCCHHHHHHHH---HHHhccccccccCCCCCEEEEecCccccHHHHHHHcCCCCCccCC--------CHHHHHhhC--
Confidence 99999999986 3334 356999999999999999999999887766655 344443333
Q ss_pred CCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCccc
Q psy14428 307 MPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKN 386 (583)
Q Consensus 307 ~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~ 386 (583)
.++++++++||||||||.+.. +..+++.+|.||+|.+..|.+. ....+++|+++||||+
T Consensus 194 -~~~~~ii~l~sPnNPtG~l~~----------~v~~~~~~I~DEaY~~~~f~~~----------~~~~~~~Ivl~S~SK~ 252 (425)
T d2hoxa1 194 -NPEQYIEMVTSPNNPEGLLRH----------AVIKGCKSIYDMVYYWPHYTPI----------KYKADEDILLFTMSKF 252 (425)
T ss_dssp -CGGGEEEEEESSCTTTCCCCC----------CSSTTCEEEEECTTCSTTTSCC----------CSCBCCSEEEEEHHHH
T ss_pred -CCCceEEEEECCCCCCcchhh----------hhhhCCEEEEeccccCccccch----------hhhcCCeEEEEeCHHh
Confidence 678899999999999998642 3457899999999976655431 2345789999999999
Q ss_pred ccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCC
Q psy14428 387 MGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSD 439 (583)
Q Consensus 387 ~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~ 439 (583)
||++|+|+||+++ ++ +.+++++.+.......++|.++|.++..++++
T Consensus 253 fglaGlRiGw~i~--~~----~~i~~~~~~~~~~~~~~vs~~~Q~aa~~aL~~ 299 (425)
T d2hoxa1 253 TGHSGSRFGWALI--KD----ESVYNNLLNYMTKNTEGTPRETQLRSLKVLKE 299 (425)
T ss_dssp TSCGGGCCEEEEE--CC----HHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHH
T ss_pred ccCcchheeeEEe--CC----HHHHHHHHHhhccCcccCCHHHHHHHHHHhhc
Confidence 9999999999998 76 57889999998888899999999999998865
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.86 E-value=3.6e-21 Score=198.76 Aligned_cols=209 Identities=13% Similarity=0.127 Sum_probs=160.2
Q ss_pred CCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEE-EEc-CCCChhhHHHHhhcC
Q psy14428 202 YANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTV-YFP-TPTWNGHVRFCTDSR 279 (583)
Q Consensus 202 Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~V-lv~-~P~y~~~~~~~~~~G 279 (583)
+.+..+.++++++.++++... ..+++++ |+|+++|+..+ +..+.+ +|.| +++ .|+|+.+...++..|
T Consensus 46 ~~~~~~~~~l~~~~~~~~~~~-----~~e~~~~--~~~~~~a~~~~---l~al~~-~~~vi~~~~~~~~~~~~~~~~l~g 114 (366)
T d2aeua1 46 IGSSYFAEKVNEYGLKHLGGD-----ENDKCVG--FNRTSSAILAT---ILALKP-KKVIHYLPELPGHPSIERSCKIVN 114 (366)
T ss_dssp THHHHHHHHHHHHHHHHHTCC-----TTEEEEE--ESSHHHHHHHH---HHHHCC-SEEEEECSSSSCCTHHHHHHHHTT
T ss_pred cCchhhHHHHHHHHHHHccCC-----CccEEEE--eCCHHHHHHHH---HHHhCC-CCEEEEecCCCcchhHHHHHHhcC
Confidence 445667889999999998643 3578999 99999999874 455776 5555 444 689999999999999
Q ss_pred CeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCC
Q psy14428 280 LNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGD 359 (583)
Q Consensus 280 ~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~ 359 (583)
++++ +. + |++++++++ +++++++++++|+||+ +++.+++++|+++|+++|++||+||+|....++.
T Consensus 115 ~~~v--~~---~----d~e~l~~~i---~~~tk~i~~~~p~n~~--~~~~~~l~~i~~ia~~~~~~~i~De~y~~~~~~~ 180 (366)
T d2aeua1 115 AKYF--ES---D----KVGEILNKI---DKDTLVIITGSTMDLK--VIELENFKKVINTAKNKEAIVFVDDASGARVRLL 180 (366)
T ss_dssp CEEE--EE---S----CHHHHHTTC---CTTEEEEEECBCTTSC--BCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHH
T ss_pred CeEE--CC---C----CHHHHHHhc---CCCceEEEEEecCCCC--cCCHHHHHHHHHHhccCcEEEEEecCcccccccc
Confidence 9764 33 1 677776665 7899999999999996 4788999999999999999999999998765543
Q ss_pred CCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCC
Q psy14428 360 FDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSD 439 (583)
Q Consensus 360 ~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~ 439 (583)
. ..++... .+-.+++.|+||.+ +|+|+||+++ + ++++++++..++...++++++.|.++.+.++.
T Consensus 181 ~--~~~~~~~----~~~di~~~S~sK~~--~g~~~G~i~~--~-----~~~i~~~~~~~~~~g~~~~~~~~~a~~~aL~t 245 (366)
T d2aeua1 181 F--NQPPALK----LGADLVVTSTDKLM--EGPRGGLLAG--K-----KELVDKIYIEGTKFGLEAQPPLLAGIYRALKN 245 (366)
T ss_dssp T--TCCCHHH----HTCSEEEEETTSSS--SSCSCEEEEE--E-----HHHHHHHHHHHHTTTCBCCHHHHHHHHHHHHH
T ss_pred c--cCCCHhh----cCceEEEecccccc--cccceeEEEe--c-----HHHHHHHHHHHhcccccCCHHHHHHHHHHHHh
Confidence 1 1111111 13347889999965 6999999999 7 68999999999888899999999998887753
Q ss_pred ---hhhhhhhhhHH
Q psy14428 440 ---PKLKAQCDETE 450 (583)
Q Consensus 440 ---~~~~~~~~~~~ 450 (583)
..++++.++.+
T Consensus 246 l~~~r~~~~~~~~~ 259 (366)
T d2aeua1 246 FNLERIRKAFERAK 259 (366)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHH
Confidence 23444444443
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.81 E-value=1.9e-19 Score=184.81 Aligned_cols=164 Identities=13% Similarity=0.037 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecc
Q psy14428 209 AKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYF 288 (583)
Q Consensus 209 ~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~ 288 (583)
..+++.+|++++. |++++ |+|+++|+.++ +..++++||.|++++|+|......++..|++++.+|..
T Consensus 50 ~~~~~~~A~~~g~--------e~~~~--t~g~t~a~~~~---~~al~~~gd~Vi~~~~~h~s~~~~~~~~g~~v~~v~~~ 116 (364)
T d2e7ja1 50 DFIHNQLPKFLGC--------DVARV--TNGAREAKFAV---MHSLAKKDAWVVMDENCHYSSYVAAERAGLNIALVPKT 116 (364)
T ss_dssp HHHHTHHHHHTTS--------SEEEE--ESSHHHHHHHH---HHHHCCTTCEEEEETTCCHHHHHHHHHTTCEEEEECCC
T ss_pred HHHHHHHHHHhCc--------CEEEE--ECcHHHHHHHH---HHHHhCCCcEEEeecccccccchHHHhccceEEEeeec
Confidence 4578888888752 68999 99999999885 45567789999999999988888889999999999985
Q ss_pred cCCCCCCChhhHHHHHHcCC--CCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHH
Q psy14428 289 DNKTNGLDFAGMMEDIKAMP--ERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFS 366 (583)
Q Consensus 289 d~~~~g~d~~~l~~~l~~~~--~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~ 366 (583)
+..++.+|++.+++.+++.+ .+.+++++++|+||||.+.+ +++|+++|++||+++++|++|..-..+- .
T Consensus 117 ~~~~~~i~~~~l~~~i~~~~k~~~~~lv~i~~~~n~tG~~~~---l~~I~~ia~~~~i~livD~a~~~g~~~~------~ 187 (364)
T d2e7ja1 117 DYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPD---VKKIAKVCSEYDVPLLVNGAYAIGRMPV------S 187 (364)
T ss_dssp CTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCC---HHHHHHHHHTTTCCEEEECTTTBTTBCC------C
T ss_pred cccccccCHHHHHhhhhhhcccCCceEEEeecCCCCCceeec---chhheeccccccchhhccccchhhhhhh------c
Confidence 44567899999999986543 45678889999999999987 5678899999999999999996443321 2
Q ss_pred HHHHHHhcCcEEEEecCcccccccCccceEEEE
Q psy14428 367 LRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSV 399 (583)
Q Consensus 367 ~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~ 399 (583)
...+ +..+++.|++|.++.+| ++||+++
T Consensus 188 ~~~~----g~D~~~~S~~K~~~~~g-~~g~l~~ 215 (364)
T d2e7ja1 188 LKEI----GADFIVGSGHKSMAASG-PIGVMGM 215 (364)
T ss_dssp HHHH----TCSEEEEEHHHHSSCCS-SCEEEEE
T ss_pred cccc----ccceeeeccccccCCCC-CEEEEEE
Confidence 2222 23478889999999676 8999999
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Probab=99.59 E-value=2.2e-14 Score=148.38 Aligned_cols=188 Identities=14% Similarity=0.080 Sum_probs=140.8
Q ss_pred CChHHHHHHHHHhccCCCCCCCCC-CC-----------CHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHH
Q psy14428 182 VLPSVKEAERRIYEKNLDHEYANI-GG-----------DAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTA 249 (583)
Q Consensus 182 ~~~~v~~a~~~~~~~~~~~~Y~~~-~G-----------~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~ 249 (583)
+++.+.+++.+.+... ..|..+ .+ +.+.|+.+|++++ +++++|++ |+|+++++..+..
T Consensus 14 ~~~~v~ea~~~~~~~~--~~~~np~~~~~~~~~~~~~~~~~~R~~iA~~lg------~~~~~I~~--~~~~t~~l~~~~~ 83 (391)
T d1p3wa_ 14 VDPRVAEKMMQFMTMD--GTFGNPASRSHRFGWQAEEAVDIARNQIADLVG------ADPREIVF--TSGATESDNLAIK 83 (391)
T ss_dssp CCHHHHHHHHTTTSTT--SCCCCTTCTTSHHHHHHHHHHHHHHHHHHHHHT------CCGGGEEE--ESSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhc--cccCCCchhhhHHHHHHHHHHHHHHHHHHHHcC------CCCCcEEE--ECCHHHHHHHHHh
Confidence 6788889888876542 223222 11 3468889999986 56899999 9999999987643
Q ss_pred HHH-HhCCCCCEEEEcCCCChhhHHHHh---hcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCC
Q psy14428 250 FLE-RFYPGVKTVYFPTPTWNGHVRFCT---DSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGV 325 (583)
Q Consensus 250 ~l~-~~~~~gd~Vlv~~P~y~~~~~~~~---~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~ 325 (583)
.+. ...++||+|++.++.|+.+...++ ..|+++..+|. +. +..+|++.+++.+ +++++++++++++||||.
T Consensus 84 ~~~~~~~~~gd~Vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~-~~-~~~~d~~~~~~~i---~~~T~lv~is~~~n~tG~ 158 (391)
T d1p3wa_ 84 GAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAP-QR-NGIIDLKELEAAM---RDDTILVSIMHVNNEIGV 158 (391)
T ss_dssp HHHHHHGGGCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECC-CT-TSCCCHHHHHHHC---CTTEEEEECCSBCTTTCC
T ss_pred hhhhhhcCCCCEEEEeccccchHHHHHHHHHHcCCEEEEeCC-CC-CCeEcHHHHHHhC---CCCcEEEEEECCCCCCee
Confidence 322 234569999999999998766554 45999999998 44 3678999998887 789999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEE
Q psy14428 326 DLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSV 399 (583)
Q Consensus 326 ~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~ 399 (583)
+++.+ +|.++|+++|+++++|.++..-...- +. ...+--+++.|..|.+|.+| +|++++
T Consensus 159 ~~~~~---~I~~~~~~~~~~~ivD~~~~~g~~~~---d~-------~~~~~D~~~~s~~k~~g~~g--~g~~~~ 217 (391)
T d1p3wa_ 159 VQDIA---AIGEMCRARGIIYHVDATQSVGKLPI---DL-------SQLKVDLMSFSGHKIYGPKG--IGALYV 217 (391)
T ss_dssp BCCHH---HHHHHHHHHTCEEEEECTTTBTTBCC---CT-------TTSCCSEEEEESTTTTSCSS--CEEEEE
T ss_pred ECCHH---HHHHHhccCCcEEEEeeccccCCccc---cc-------hhccccccccccccccCCCc--eEEEEE
Confidence 99955 67888999999999999986543321 11 11233467789999987665 588887
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=99.52 E-value=1.2e-14 Score=145.87 Aligned_cols=221 Identities=11% Similarity=0.039 Sum_probs=146.9
Q ss_pred CChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEE
Q psy14428 182 VLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTV 261 (583)
Q Consensus 182 ~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~V 261 (583)
|.|.+++|+.+.... ...|.+.....+|++.+|++++. +++++ ++||++|..++ +..+..+||.+
T Consensus 12 p~p~v~~A~~~a~~g--~~~yg~~p~~~~le~~lA~~~G~--------~~~~~--~~sGt~A~~~a---l~a~~~~g~~~ 76 (343)
T d1m6sa_ 12 PTEEMRKAMAQAEVG--DDVYGEDPTINELERLAAETFGK--------EAALF--VPSGTMGNQVS---IMAHTQRGDEV 76 (343)
T ss_dssp CCHHHHHHHHTCCCC--CGGGTCCHHHHHHHHHHHHHTTC--------SEEEE--ESCHHHHHHHH---HHHHCCTTCEE
T ss_pred CCHHHHHHHHhhhcC--CcccCCCHHHHHHHHHHHHHHCC--------CeEEE--eCCHHHHHHHH---HHHHhccCCce
Confidence 356788887654321 34588888889999999999853 46777 88899998774 55677779999
Q ss_pred EEcCCCChhhH---HHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCC----CCcEEEEeCCCCCCCCCCCCHHHHHH
Q psy14428 262 YFPTPTWNGHV---RFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMP----ERSILFLQTSSHNPTGVDLSEDQWRQ 334 (583)
Q Consensus 262 lv~~P~y~~~~---~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~----~~~~~i~i~~p~NPTG~~~s~~~~~~ 334 (583)
++..+.+..+. ......+..+..++. + ....|++.+++.+.... ....+++.+.++||.|.+++.+++.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 153 (343)
T d1m6sa_ 77 ILEADSHIFWYEVGAMAVLSGVMPHPVPG-K--NGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKE 153 (343)
T ss_dssp EEETTCHHHHSSTTHHHHHTCCEEEEECE-E--TTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHH
T ss_pred eccccccceeeecccccccccceeecccc-c--cCccCHHHHHHhhhhhhcccccccccccccccccCCceecCHHHHHH
Confidence 99999866543 334444566666655 2 24568888888775431 22345667788899999999999999
Q ss_pred HHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHH
Q psy14428 335 LAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQL 414 (583)
Q Consensus 335 l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l 414 (583)
|.++|++++++++.|+++..+..... ......... . .... +++|..+..|.+.|+.+. . .+++...
T Consensus 154 i~~~~~~~g~~~~~D~a~~~~~~~~~---~~~~~~~~~-~-~~~~--~~~~~~~~~g~~~~~~~~--~-----~~~~~~~ 219 (343)
T d1m6sa_ 154 ICTIAKEHGINVHIDGARIFNASIAS---GVPVKEYAG-Y-ADSV--MFCLSKGLCAPVGSVVVG--D-----RDFIERA 219 (343)
T ss_dssp HHHHHHHHTCEEEEEETTHHHHHHHH---CCCHHHHHH-T-CSEE--EEESSSTTCCSSCEEEEE--C-----HHHHHHH
T ss_pred HHHHHHhcCeEEEecccccccccccc---ccchhhhcc-c-cccc--cccccccccccccccccc--c-----HHHHhhh
Confidence 99999999999999999876543210 001111111 1 2222 334444456788888888 5 4666666
Q ss_pred HHHHhccccCCChHHHHHHH
Q psy14428 415 KILIRGFYSNPPIHGARIVT 434 (583)
Q Consensus 415 ~~~~~~~~~~~s~~~q~~~~ 434 (583)
.........+.+...+.++.
T Consensus 220 ~~~~~~~~~~~~~~~~~~a~ 239 (343)
T d1m6sa_ 220 RKARKMLGGGMRQAGVLAAA 239 (343)
T ss_dssp HHHHHHHTCCCSSTHHHHHH
T ss_pred HhhCcccccccchhHHHHHh
Confidence 66554444444444444443
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Probab=99.49 E-value=1.6e-13 Score=141.09 Aligned_cols=190 Identities=11% Similarity=0.003 Sum_probs=127.2
Q ss_pred CChHHHHHHHHHhcc---CCCCCCCCCCC----CHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHh
Q psy14428 182 VLPSVKEAERRIYEK---NLDHEYANIGG----DAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERF 254 (583)
Q Consensus 182 ~~~~v~~a~~~~~~~---~~~~~Y~~~~G----~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~ 254 (583)
+|+.+.+++.+..+. .....|..... ..++|+.+|++++ +++++|++ |+|+++++.++ +....
T Consensus 19 ~p~~v~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~------~~~~~i~~--~~g~t~a~~~~--~~~l~ 88 (381)
T d1elua_ 19 LPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFN------VDPNTITI--TDNVTTGCDIV--LWGLD 88 (381)
T ss_dssp CCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTT------SCGGGEEE--ESSHHHHHHHH--HHHSC
T ss_pred CCHHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHHHHhC------CCcccEEE--ECChHHHhhhc--chhhh
Confidence 445666666555432 11122222222 3457778888875 56789999 99999999986 22223
Q ss_pred CCCCCEEEEcCCCChhhHH----HHhhcCCeEEEEecccCCCCCCChhhHHHHHHc-CCCCcEEEEeCCCCCCCCCCCCH
Q psy14428 255 YPGVKTVYFPTPTWNGHVR----FCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKA-MPERSILFLQTSSHNPTGVDLSE 329 (583)
Q Consensus 255 ~~~gd~Vlv~~P~y~~~~~----~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~-~~~~~~~i~i~~p~NPTG~~~s~ 329 (583)
.++||+|+++++.|+.... +.+..|++++.+|. +... +.+..++.+++ ..++++++++++++||||.+++.
T Consensus 89 ~~~g~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~v~~-~~~~---~~~~~~~~l~~~i~~~t~~v~i~~~~n~tG~~~~~ 164 (381)
T d1elua_ 89 WHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPV-AATL---NQGDAAAVLANHLGPKTRLVILSHLLWNTGQVLPL 164 (381)
T ss_dssp CCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECC-GGGS---SSSCHHHHHHTTCCTTEEEEEEESBCTTTCCBCCH
T ss_pred hcCCceEEEeccccceeeecccccccccccccccccc-cccc---ccchHHHHHHhhhcccccccccccccccccccchh
Confidence 5679999999999976443 45557999999987 3322 22223333433 37789999999999999999997
Q ss_pred HHHHHHHHHHHh----cCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEE
Q psy14428 330 DQWRQLAVVVKQ----RHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSV 399 (583)
Q Consensus 330 ~~~~~l~~~a~~----~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~ 399 (583)
+++ .++|++ +++++++|.++..-...- .+ +..+-.+++.|+.|.++ ....+|++.+
T Consensus 165 ~~I---~~l~~~~~~~~~~~~~vD~~~~~g~~~~------~~----~~~~~D~~~~s~~K~~~-~p~G~g~l~~ 224 (381)
T d1elua_ 165 AEI---MAVCRRHQGNYPVRVLVDGAQSAGSLPL------DF----SRLEVDYYAFTGHKWFA-GPAGVGGLYI 224 (381)
T ss_dssp HHH---HHHHHHCCSSSCCEEEEECTTTBTTBCC------CT----TTSCCSEEEEESSSTTC-CCTTCEEEEE
T ss_pred hHH---HHHHhhcccccccccccccccccccccc------cc----ccccccccccccccccc-ccchhhHHHh
Confidence 765 555555 469999999886433221 11 22245588999999997 4467899988
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Probab=99.48 E-value=2.2e-12 Score=132.61 Aligned_cols=217 Identities=13% Similarity=0.075 Sum_probs=155.4
Q ss_pred CCCccccCCccccCCCCCCCCChHHHHHHHHHhcc-C-----CCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEE
Q psy14428 162 HPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEK-N-----LDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIV 235 (583)
Q Consensus 162 ~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~-~-----~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~ 235 (583)
+...+||+..++- |.. ..|.+.++..+.+++ + ...-+....-..+|.+.+|+|++. +..++
T Consensus 37 g~~~l~f~s~dYL---Gl~-~~p~v~~a~~~a~~~~G~~~~~sr~~~g~~~~~~~lE~~LA~~~g~--------e~al~- 103 (383)
T d1bs0a_ 37 DRQYLNFSSNDYL---GLS-HHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLGY--------SRALL- 103 (383)
T ss_dssp TEEEEECSCCCTT---SGG-GCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTC--------SEEEE-
T ss_pred CeEEEEEEccccc---ccC-CCHHHHHHHHHHHHHhCCCCCccccccCcchHHHHHHHHHHHhcCC--------CceEE-
Confidence 4567888776552 211 235677776666654 1 112223333458899999999974 45555
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEE
Q psy14428 236 QGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFL 315 (583)
Q Consensus 236 ~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~ 315 (583)
.+.+..|... ++..+..++|.|++..-.+.....-++..+.+++.++-. |.+.+++.+.+..+..++++
T Consensus 104 -~~SG~~an~~---~i~al~~~~d~v~~d~~~h~si~~g~~~~~~~~~~~~hn-------d~~~le~~l~~~~~~~~~vv 172 (383)
T d1bs0a_ 104 -FISGFAANQA---VIAAMMAKEDRIAADRLSHASLLEAASLSPSQLRRFAHN-------DVTHLARLLASPCPGQQMVV 172 (383)
T ss_dssp -ESCHHHHHHH---HHHHHCCTTCEEEEETTCCHHHHHHHHTSSSEEEEECTT-------CHHHHHHHHHSCCSSCEEEE
T ss_pred -ecccchhhHH---HHHhhcCCCceEEeeccccHHHhhccccCCCcceEecch-------HHHHHHHHhcccCCCceEEE
Confidence 5666666655 456677779999999999999988888889988777541 88899999988777888999
Q ss_pred eCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccce
Q psy14428 316 QTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVG 395 (583)
Q Consensus 316 i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG 395 (583)
+....+.+|.+.+.++ |+++|++|++++++||++.....+.. ..-.....+. ...+.+.||||.+|.+| |
T Consensus 173 ~e~v~s~~G~i~pl~~---l~~l~~~~~~~livDeah~~gv~G~~---g~G~~~~~~~-~~~~~~~t~~ka~g~~G---g 242 (383)
T d1bs0a_ 173 TEGVFSMDGDSAPLAE---IQQVTQQHNGWLMVDDAHGTGVIGEQ---GRGSCWLQKV-KPELLVVTFGKGFGVSG---A 242 (383)
T ss_dssp EESBCTTTCCBCCHHH---HHHHHHHTTCEEEEECTTTTTTSSGG---GCCHHHHTTC-CCSEEEEESSSTTSSCC---E
T ss_pred ecCCCCCCCcccchhH---HHHHHHhcCcEEEeecceeeeecCCc---ccchHHHcCC-ccccccccccccccccc---c
Confidence 9999999999998655 46778999999999999998887641 1112222222 34566789999998776 8
Q ss_pred EEEEEcCCchhHHHHHHHHHHHHh
Q psy14428 396 TFSVLTPTSDETERIMSQLKILIR 419 (583)
Q Consensus 396 ~lv~~~p~~~~~~~li~~l~~~~~ 419 (583)
++.+ + .++++.++....
T Consensus 243 ~v~~--~-----~~~~~~l~~~~~ 259 (383)
T d1bs0a_ 243 AVLC--S-----STVADYLLQFAR 259 (383)
T ss_dssp EEEE--C-----HHHHHHHHHHCH
T ss_pred cccc--c-----hhHHHHHHhhch
Confidence 8888 6 578888876533
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Probab=99.39 E-value=4e-11 Score=123.80 Aligned_cols=218 Identities=11% Similarity=0.045 Sum_probs=146.3
Q ss_pred CCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCC-------CCCCCHHHHHHHHHHHhCCCCCCCCCCCeEE
Q psy14428 162 HPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYA-------NIGGDAKFCKLAAQLAYGEDFPAFKDNRLAI 234 (583)
Q Consensus 162 ~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~-------~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i 234 (583)
+...+||+..++- |.. ..|.+.++..+.++.. ..++. ...-..+|.+.+|++++. +.+++
T Consensus 44 G~~~l~f~s~dYL---Gl~-~hp~v~~a~~~a~~~~-g~~~~~sr~~~g~~~~~~~lE~~lA~~~g~--------e~al~ 110 (401)
T d1fc4a_ 44 GSHVINFCANNYL---GLA-NHPDLIAAAKAGMDSH-GFGMASVRFICGTQDSHKELEQKLAAFLGM--------EDAIL 110 (401)
T ss_dssp SCEEEECCCSCTT---SCT-TCHHHHHHHHHHHHHH-CSCCCSCHHHHCCBHHHHHHHHHHHHHHTC--------SEEEE
T ss_pred CCEEEEEEccccc---ccc-CCHHHHHHHHHHHHHh-CCCcccceeeccCcHHHHHHHHHHHHhhcC--------CceEE
Confidence 4456888765542 211 2467777777666541 11121 223346899999999864 56777
Q ss_pred EecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHH---HcCCCCc
Q psy14428 235 VQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDI---KAMPERS 311 (583)
Q Consensus 235 ~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l---~~~~~~~ 311 (583)
++.+..|...+ +..+..++|.|++..-.+..+..-+...++++..++.. |.+.+++.+ .......
T Consensus 111 --~~SG~~An~~~---i~~l~~~~d~i~~d~~~h~s~~~G~~~~~a~~~~~~~~-------d~~~le~~~~~~~~~~~~~ 178 (401)
T d1fc4a_ 111 --YSSCFDANGGL---FETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYANN-------DMQELEARLKEAREAGARH 178 (401)
T ss_dssp --ESCHHHHHHTT---HHHHCCTTCEEEEETTCCHHHHHHHHTSCSEEEEECTT-------CHHHHHHHHHHHHHTTCSS
T ss_pred --ecchhhhhHHH---HHHhcCCCcEEEeCCcchHHHHccccccCceEEEEcCC-------ChHHHHHHHHHhhhcccCc
Confidence 78888887763 55677779999999999998888888888888877652 455555444 3334555
Q ss_pred EEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccC
Q psy14428 312 ILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYG 391 (583)
Q Consensus 312 ~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~G 391 (583)
.++++-.-.+..|...+ +++|.++|+++++++|.||++....++.. ..-....+....+..|++.||||.++ |
T Consensus 179 ~liv~egv~s~~G~~~~---L~~l~~L~~~~~a~LivDeah~~g~~g~~--G~G~~~~~~~~~~~dii~~tl~Ka~g--g 251 (401)
T d1fc4a_ 179 VLIATDGVFSMDGVIAN---LKGVCDLADKYDALVMVDDSHAVGFVGEN--GRGSHEYCDVMGRVDIITGTLGKALG--G 251 (401)
T ss_dssp EEEEEESEETTTTEECC---HHHHHHHHHHTTEEEEEECTTTTTTSSTT--SCCHHHHTTCTTCCSEEEEESSSTTC--S
T ss_pred eEEEEcCCCCCCCchhh---hhHHHHHHhhcCcEEEehhhhccccccCC--CCccchhccCCCCCeEEEeecccccc--c
Confidence 66666555555665555 67778889999999999999999887642 11122222112345588999999984 5
Q ss_pred ccceEEEEEcCCchhHHHHHHHHHHHH
Q psy14428 392 ERVGTFSVLTPTSDETERIMSQLKILI 418 (583)
Q Consensus 392 lRiG~lv~~~p~~~~~~~li~~l~~~~ 418 (583)
...|++.+ + +++++.++...
T Consensus 252 ~~Gg~v~g--~-----~~~~~~l~~~~ 271 (401)
T d1fc4a_ 252 ASGGYTAA--R-----KEVVEWLRQRS 271 (401)
T ss_dssp SSCEEEEE--C-----HHHHHHHHHHC
T ss_pred CCcccccC--C-----HHHHHHHHcCC
Confidence 55688888 6 57888887653
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Probab=99.39 E-value=8.3e-12 Score=127.83 Aligned_cols=188 Identities=13% Similarity=0.039 Sum_probs=139.8
Q ss_pred CChHHHHHHHHHhccCCCCCCCCCCC-----------CHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHH
Q psy14428 182 VLPSVKEAERRIYEKNLDHEYANIGG-----------DAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAF 250 (583)
Q Consensus 182 ~~~~v~~a~~~~~~~~~~~~Y~~~~G-----------~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~ 250 (583)
+++.+.+++.+..++. |..+.+ +.+.|+++|++++ +++++|++ ++|+++++.++...
T Consensus 13 ~p~~v~ea~~~~~~~~----~~np~~~~~~~~~~~~~~~~aR~~ia~l~~------~~~~~i~~--~~~~T~~l~~~~~~ 80 (376)
T d1eg5a_ 13 VDDRVLEEMIVFYREK----YGNPNSAHGMGIEANLHMEKAREKVAKVLG------VSPSEIFF--TSCATESINWILKT 80 (376)
T ss_dssp CCHHHHHHHHHHHHTC----CCCTTCSSHHHHHHHHHHHHHHHHHHHHHT------SCGGGEEE--ESCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHc----CCCCccccHHHHHHHHHHHHHHHHHHHHcC------CCCCcEEE--ECCHHHHHHhhhhc
Confidence 6688888887777542 222211 3456888999986 56899999 99999999886433
Q ss_pred H-HHhCCCCCEEEEcCCCChhhHHHH---hhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCC
Q psy14428 251 L-ERFYPGVKTVYFPTPTWNGHVRFC---TDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVD 326 (583)
Q Consensus 251 l-~~~~~~gd~Vlv~~P~y~~~~~~~---~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~ 326 (583)
+ ....++|+.|++....++.+.... +..|++++.+|+ ++ ++.+|++.+++.+ .+++++++++.++|+||..
T Consensus 81 ~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~v~~vp~-~~-~~~id~~~l~~~i---~~~t~lv~is~v~~~tG~~ 155 (376)
T d1eg5a_ 81 VAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPV-DS-RGVVKLEELEKLV---DEDTFLVSIMAANNEVGTI 155 (376)
T ss_dssp HHHHTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCB-CT-TSCBCHHHHHHHC---CTTEEEEEEESBCTTTCBB
T ss_pred ccccccccCcccccccccchhhHHHHHHHHhcCCEEEEEcC-CC-CCeECHHHHHHhc---CCCceEEEEECCcccccee
Confidence 3 234566899999988888776655 455999999998 54 4678999998887 7899999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEE
Q psy14428 327 LSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTF 397 (583)
Q Consensus 327 ~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~l 397 (583)
.+.+++.++++ +...++++++|.+..--...- + .+..+..+++.|++|.+|.+|..++|+
T Consensus 156 ~~~~~i~~~~~-~~~~~~~~~vD~~q~~g~~~~---d-------~~~~~~D~~~~s~~K~~gp~G~~~l~~ 215 (376)
T d1eg5a_ 156 QPVEDVTRIVK-KKNKETLVHVDAVQTIGKIPF---S-------LEKLEVDYASFSAHKFHGPKGVGITYI 215 (376)
T ss_dssp CCHHHHHHHHH-HHCTTCEEEEECTTTTTTSCC---C-------CTTTCCSEEEEEGGGGTSCTTCEEEEE
T ss_pred eeehhhhhhhh-hcccCceeEEEeeeccccccc---c-------ccccCccceecccceeecCCCceeEEe
Confidence 99988877665 345588999998864433221 0 122345689999999998888866664
|
| >d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase ArnB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.36 E-value=1.8e-11 Score=125.15 Aligned_cols=192 Identities=13% Similarity=0.057 Sum_probs=138.6
Q ss_pred CChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHh-CCCCCE
Q psy14428 182 VLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERF-YPGVKT 260 (583)
Q Consensus 182 ~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~-~~~gd~ 260 (583)
..+.-.+++.++++.+ .|+......+|.+.+|++++.+ +.+. ++.|+.|+.++ +..+ .++||+
T Consensus 10 ~~~~~~~~~~~~~~~~---~~~~G~~v~~~E~~la~~~g~~--------~ai~--~~sgt~Al~~a---l~al~~~~gde 73 (376)
T d1mdoa_ 10 MGAEELAAVKTVLDSG---WITTGPKNQELEAAFCRLTGNQ--------YAVA--VSSATAGMHIA---LMALGIGEGDE 73 (376)
T ss_dssp CCHHHHHHHHHHHHHT---CCSSSHHHHHHHHHHHHHHCCS--------EEEE--ESCHHHHHHHH---HHHTTCCTTCE
T ss_pred CCHHHHHHHHHHHhcC---CCcCCHHHHHHHHHHHHHHCcC--------eEEE--eCCHHHHHHHH---HHHhCCCCCCE
Confidence 3345456666666543 3444445799999999999864 3455 77779999986 3444 567999
Q ss_pred EEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHH
Q psy14428 261 VYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVK 340 (583)
Q Consensus 261 Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~ 340 (583)
|++++.+|......+...|++++.+++ +++++.+|++.+++++ +++++++++.+ ..|...+ +.+|.++|+
T Consensus 74 Vi~~~~~~~~~~~ai~~~g~~pv~~d~-~~~~~~~d~~~l~~~i---~~~tkaIi~~h---~~G~~~~---~~~i~~i~~ 143 (376)
T d1mdoa_ 74 VITPSMTWVSTLNMIVLLGANPVMVDV-DRDTLMVTPEHIEAAI---TPQTKAIIPVH---YAGAPAD---LDAIYALGE 143 (376)
T ss_dssp EEEESSSCHHHHHHHHHTTCEEEEECB-CTTTCCBCHHHHHHHC---CTTEEEECCBC---GGGCCCC---HHHHHHHHH
T ss_pred EEEecccccccccchhccccceeeecc-cccccCCCHHHHHHhc---CCCCeEEEEeC---CCCCccc---hhHHHHHHH
Confidence 999999999999999999999999999 7777899999999888 67888888653 5676554 566788899
Q ss_pred hcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecC--cccccccCccceEEEEEcCCchhHHHHHHHHHHH
Q psy14428 341 QRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSF--SKNMGLYGERVGTFSVLTPTSDETERIMSQLKIL 417 (583)
Q Consensus 341 ~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~--SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~ 417 (583)
++|++||+|.+......-. .. . ....+. .+.|| +|.++ ...-|.++. .+ +++.++++..
T Consensus 144 ~~~i~vIeD~a~a~g~~~~---~~-~----~g~~g~--~~~Sf~~~K~l~--~g~GG~i~t--~~----~~l~~~~~~~ 204 (376)
T d1mdoa_ 144 RYGIPVIEDAAHATGTSYK---GR-H----IGARGT--AIFSFHAIKNIT--CAEGGIVVT--DN----PQFADKLRSL 204 (376)
T ss_dssp HHTCCBCEECTTCTTCEET---TE-E----TTSSSE--EEEECCTTSSSC--SSSCEEEEE--SC----HHHHHHHHHH
T ss_pred hcCceEEeccchhccCeeC---Ce-e----cccccC--ccccCCCcCCCC--CCCCCEEEE--ec----hhHHHHHHhh
Confidence 9999999999976554211 00 0 112233 34455 58775 344688887 55 4677777665
|
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Probab=99.36 E-value=1.8e-10 Score=117.97 Aligned_cols=233 Identities=13% Similarity=0.043 Sum_probs=150.7
Q ss_pred CCCccccCCccccCCCCCCCCChHHHHHHHHHhcc-CC-----CCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEE
Q psy14428 162 HPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEK-NL-----DHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIV 235 (583)
Q Consensus 162 ~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~-~~-----~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~ 235 (583)
+.+.++|+..++- |.. ..+.++++..+.++. +. ..-+....=..+|.+.+|+|++. +..++
T Consensus 44 ~~~~~~FsSndYL---GL~-~~p~v~~a~~~al~~yG~gs~~Sr~~~G~~~~h~~LE~~lA~~~g~--------e~all- 110 (396)
T d2bwna1 44 KQDITVWCGNDYL---GMG-QHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQK--------EAALV- 110 (396)
T ss_dssp EEEEEECSCSCTT---SGG-GCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTTC--------SEEEE-
T ss_pred CeEEEEEEccccc---CcC-CCHHHHHHHHHHHHHhCCCccccccccCCchHHHHHHHHHHHHhCC--------Cceee-
Confidence 4567888877763 322 346777777666654 11 11122222347889999999874 33444
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcC-CCCcEEE
Q psy14428 236 QGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAM-PERSILF 314 (583)
Q Consensus 236 ~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~-~~~~~~i 314 (583)
.+.|..|...+...+... .++|.|+...-.......-++..+++++.++-. |.+.+++.++.. ..+.+++
T Consensus 111 -~~sG~~An~~~i~~l~~~-~~~d~i~~D~~~Hasi~~g~~ls~a~~~~f~Hn-------d~~~l~~l~~~~~~~~~~~i 181 (396)
T d2bwna1 111 -FSSAYNANDATLSTLRVL-FPGLIIYSDSLNHASMIEGIKRNAGPKRIFRHN-------DVAHLRELIAADDPAAPKLI 181 (396)
T ss_dssp -ESCHHHHHHHHHHHHHHH-STTCEEEEETTCCHHHHHHHHHSCCCEEEECTT-------CHHHHHHHHHHSCTTSCEEE
T ss_pred -eecchHHHHHHHHHHhcc-cCCCceeehhhhhhccchhhhccccCceEeecc-------hHHHhhhHHhhhcccCceeE
Confidence 344444433321222222 348888888888888888888899998877541 677777766654 3455677
Q ss_pred EeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccc
Q psy14428 315 LQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERV 394 (583)
Q Consensus 315 ~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRi 394 (583)
++..-..-+|.+.+ +.+|+++|++|++++++||+++--.++..... ....+.......|+++||||.||..|
T Consensus 182 v~egvySmdGd~ap---l~~l~~L~~~y~~~L~vDeAHs~Gv~G~~G~G--~~~~~~~~~~~di~~gTlsKa~g~~G--- 253 (396)
T d2bwna1 182 AFESVYSMDGDFGP---IKEICDIAEEFGALTYIDEVHAVGMYGPRGAG--VAERDGLMHRIDIFNGTLAKAYGVFG--- 253 (396)
T ss_dssp EEESBCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSTTSCC--HHHHHTCGGGCSEEEEESSSTTCSCC---
T ss_pred EEEeeccCcccccc---cHhHHHHhhhhcceeeeccceeeeeecccccc--chhhcCCceeeeeeeecccccccccc---
Confidence 77777777888887 55667889999999999999998887642122 22222122345789999999998777
Q ss_pred eEEEEEcCCchhHHHHHHHHHHHHhcc-ccCCChHHHH
Q psy14428 395 GTFSVLTPTSDETERIMSQLKILIRGF-YSNPPIHGAR 431 (583)
Q Consensus 395 G~lv~~~p~~~~~~~li~~l~~~~~~~-~~~~s~~~q~ 431 (583)
|++.+ + +++++.++...+.. ++++.++.+.
T Consensus 254 g~v~~--~-----~~~i~~l~~~~~~~ifStalpp~~~ 284 (396)
T d2bwna1 254 GYIAA--S-----ARMVDAVRSYAPGFIFSTSLPPAIA 284 (396)
T ss_dssp EEEEE--C-----HHHHHHHHHHCHHHHTSBCCCHHHH
T ss_pred cccch--h-----HHHHHHHHhhcchhhhcccCcHHHH
Confidence 88888 6 58899988765444 4444344433
|
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Probab=99.34 E-value=1.3e-10 Score=118.38 Aligned_cols=233 Identities=14% Similarity=0.112 Sum_probs=163.6
Q ss_pred ChHHHHHHHHHhccCCCCCCCC--CCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCE
Q psy14428 183 LPSVKEAERRIYEKNLDHEYAN--IGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKT 260 (583)
Q Consensus 183 ~~~v~~a~~~~~~~~~~~~Y~~--~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~ 260 (583)
++...+.......+.....|+- ......|.+.+|...+. +.-++ +++|+.|+..+ +..++++||.
T Consensus 38 ~~~~~~~~~~~~~~~~~~~Y~R~~nPT~~~LE~~la~LEgg--------~~a~~--~sSGmaAi~~~---l~~ll~~Gd~ 104 (397)
T d1y4ia1 38 FDSAEQGAARFALEESGYIYTRLGNPTTDALEKKLAVLERG--------EAGLA--TASGISAITTT---LLTLCQQGDH 104 (397)
T ss_dssp CSSHHHHHHHHHSCSSSSCCCTTSCHHHHHHHHHHHHHHTC--------SEEEE--ESSHHHHHHHH---HHHHCCTTCE
T ss_pred eCCHHHHHHhhcCCcCCceeeCCCCHHHHHHHHHHHHHhCC--------cccee--ehHHHHHHHHH---HhhccCCCCe
Confidence 3444444333333322344543 33346788888888754 23445 77888888774 4566777999
Q ss_pred EEEcCCCChhhHHHH----hhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHH
Q psy14428 261 VYFPTPTWNGHVRFC----TDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLA 336 (583)
Q Consensus 261 Vlv~~P~y~~~~~~~----~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~ 336 (583)
|++++..|......+ ...|+++..++. . |++.+++++ .++++++++-+|.|||..+.+ +++|+
T Consensus 105 vi~~~~~Yg~t~~~~~~~l~~~Gi~~~~vd~---~----d~~~~~~~i---~~~Tklv~~Esp~NP~l~v~D---i~~i~ 171 (397)
T d1y4ia1 105 IVSASAIYGCTHAFLSHSMPKFGINVRFVDA---G----KPEEIRAAM---RPETKVVYIETPANPTLSLVD---IETVA 171 (397)
T ss_dssp EEEESSSCHHHHHHHHTHHHHTTCEEEEECT---T----SHHHHHHHC---CTTEEEEEEESSCTTTCCCCC---HHHHH
T ss_pred eeeecccccccchhhhcccCCCceEeeccCC---C----CHHHHHHhc---CCCCcEEEecCCcccceeecc---cHHHH
Confidence 999999998876654 466999888754 2 678888877 678999999999999998887 55668
Q ss_pred HHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHH-
Q psy14428 337 VVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLK- 415 (583)
Q Consensus 337 ~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~- 415 (583)
++|+++|+++|+|..+..-.... ++ ..+--|++.|.+|.++-.+--+|-+++ .+ ++.+.+.+
T Consensus 172 ~iA~~~gi~~vvDnT~atP~~~~------Pl-----~~GaDivihS~TKyi~Ghsdvl~G~v~--~~----~~~~~~~r~ 234 (397)
T d1y4ia1 172 GIAHQQGALLVVDNTFMSPYCQQ------PL-----QLGADIVVHSVTKYINGHGDVIGGIIV--GK----QEFIDQARF 234 (397)
T ss_dssp HHHHHTTCEEEEECTTTCTTTCC------GG-----GGTCSEEEEETTTTTTCSSCCCCEEEE--EC----HHHHHHHHH
T ss_pred HHhhcCCceEEecCcccCcccCc------ch-----hcCCCEEEEehhhhcCCCcceeeeccC--CC----HHHHHHHHH
Confidence 88999999999999986433322 11 123459999999999766666766666 23 35555433
Q ss_pred -HHHhccccCCChHHHHHHHHHhCC--hhhhhhhhhHHHHHHHHHH
Q psy14428 416 -ILIRGFYSNPPIHGARIVTEILSD--PKLKAQCDETERIMSQLKI 458 (583)
Q Consensus 416 -~~~~~~~~~~s~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~l~~ 458 (583)
........+.++...+.+.+-|+. -.+++|.++..++.+.++.
T Consensus 235 ~~~~~~~G~~l~p~~a~l~~rgl~TL~lRm~~~~~nA~~lA~~L~~ 280 (397)
T d1y4ia1 235 VGLKDITGGCMSPFNAWLTLRGVKTLGIRMERHCENALKIARFLEG 280 (397)
T ss_dssp THHHHTTCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhCcCCcCCHHHHHHHHcCcCcHHHHHHHHHHHHHHHHHHHHh
Confidence 344556788899999999999986 4567777777776666653
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Probab=99.32 E-value=8.1e-11 Score=119.73 Aligned_cols=208 Identities=13% Similarity=0.105 Sum_probs=152.9
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHh----hcCCe
Q psy14428 206 GGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCT----DSRLN 281 (583)
Q Consensus 206 ~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~----~~G~~ 281 (583)
.....|.+.||+..+. +.-++ ++.|..|+..+ +..++++||.|++++..|.+....++ ..|++
T Consensus 59 PT~~~LE~~la~LEg~--------~~a~~--~~SGmaAi~~~---l~~l~~~Gd~vl~~~~~Yg~t~~l~~~~~~~~Gi~ 125 (392)
T d1gc0a_ 59 PTLNLLEARMASLEGG--------EAGLA--LASGMGAITST---LWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVK 125 (392)
T ss_dssp HHHHHHHHHHHHHHTC--------SEEEE--ESSHHHHHHHH---HHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGTCE
T ss_pred hHHHHHHHHHHHHhCC--------cceee--hhhHHHHHHHH---HHhhccCCCeeecccccchhhhhhhhhhhccCCcc
Confidence 3457888999998864 34556 78888888874 44566779999999999998877654 45888
Q ss_pred EEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCC
Q psy14428 282 VGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFD 361 (583)
Q Consensus 282 ~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~ 361 (583)
+..++. . |++.+++++ .++++++++-+|.|||..+.+ +++|+++|+++++++|+|..|..-.+-
T Consensus 126 ~~~~d~---~----d~~~~~~ai---~~~t~lv~~Esp~NP~l~v~D---i~~i~~ia~~~g~~~vvDnT~atP~~~--- 189 (392)
T d1gc0a_ 126 LRHVDM---A----DLQALEAAM---TPATRVIYFESPANPNMHMAD---IAGVAKIARKHGATVVVDNTYCTPYLQ--- 189 (392)
T ss_dssp EEEECT---T----CHHHHHHHC---CTTEEEEEEESSCTTTCCCCC---HHHHHHHHGGGTCEEEEECTTTHHHHC---
T ss_pred cccCCc---c----CHHHHHHhC---CCCCeEEEecccccceeeecc---hHHHHHHHHhcCCEEEEecCccCcccc---
Confidence 887754 1 778888877 788999999999999999987 566688899999999999998421111
Q ss_pred CchHHHHHHHHhcCcEEEEecCcccccccC-ccceEEEEEcCCchhHHHHHHHHH--HHHhccccCCChHHHHHHHHHhC
Q psy14428 362 KDAFSLRYFAKEVGQLCLAQSFSKNMGLYG-ERVGTFSVLTPTSDETERIMSQLK--ILIRGFYSNPPIHGARIVTEILS 438 (583)
Q Consensus 362 ~~~~~~~~~~~~~~~vi~i~S~SK~~~l~G-lRiG~lv~~~p~~~~~~~li~~l~--~~~~~~~~~~s~~~q~~~~~~l~ 438 (583)
+ +-..+--|++.|.+|.++-.| .-.|.+++ + ++.+.+++ ..........++...+.+..-++
T Consensus 190 ------~--Pl~~GaDivihS~TKyi~Ghsd~~~G~v~~--~-----~~~~~~~r~~~~~~~~G~~~~p~da~ll~rgl~ 254 (392)
T d1gc0a_ 190 ------R--PLELGADLVVHSATKYLSGHGDITAGIVVG--S-----QALVDRIRLQGLKDMTGAVLSPHDAALLMRGIK 254 (392)
T ss_dssp ------C--GGGGTCSEEEEETTTTTTCSSSCCCEEEEE--C-----HHHHHHHHHTHHHHHTCCCCCHHHHHHHHHHHT
T ss_pred ------C--hHHhCCCEEEEecceeecCCcccccccccc--h-----hHHHHHHHHHHHHHccCCcCChhhHHHHHhccc
Confidence 1 112345689999999996444 44555555 4 45666543 34455688899999999999998
Q ss_pred C--hhhhhhhhhHHHHHHHHH
Q psy14428 439 D--PKLKAQCDETERIMSQLK 457 (583)
Q Consensus 439 ~--~~~~~~~~~~~~~~~~l~ 457 (583)
+ -.++++.++..++.+.++
T Consensus 255 TL~lRm~~~~~nA~~lA~~L~ 275 (392)
T d1gc0a_ 255 TLNLRMDRHCANAQVLAEFLA 275 (392)
T ss_dssp THHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHH
Confidence 6 456677766666665554
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.29 E-value=2.7e-10 Score=115.50 Aligned_cols=208 Identities=14% Similarity=0.125 Sum_probs=154.6
Q ss_pred CHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhh----cCCeEE
Q psy14428 208 DAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTD----SRLNVG 283 (583)
Q Consensus 208 ~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~----~G~~~~ 283 (583)
...|.+.+|...+. +..++ ++.|..|+.. ++ .++++||.|++..+.|......++. .|+++.
T Consensus 51 ~~~le~~la~LE~~--------~~a~~--fsSGMaAisa---ll-~ll~~Gd~vv~~~~~Yg~t~~l~~~~~~~~gi~~~ 116 (380)
T d1ibja_ 51 RDALESLLAKLDKA--------DRAFC--FTSGMAALSA---VT-HLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVK 116 (380)
T ss_dssp HHHHHHHHHHHHTC--------SEEEE--ESSHHHHHHH---HH-TTSCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEE
T ss_pred HHHHHHHHHHHcCC--------ceEEe--hhhHHHHHHH---HH-HhhCCCCEEEEEecccccccchhhhhhcccccccc
Confidence 46788888887753 33455 6777888864 33 4667799999999999988776654 577777
Q ss_pred EEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCc
Q psy14428 284 AYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKD 363 (583)
Q Consensus 284 ~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~ 363 (583)
.++. . +.+.+++++ .++++++++-+|.|||..+.+. ++|+++|+++++++|+|+.+..-..-.
T Consensus 117 ~~d~---~----~~~~~~~ai---~~~t~li~~EtpsNP~l~v~Di---~~i~~iA~~~g~~~vVDnT~atP~~~~---- 179 (380)
T d1ibja_ 117 RVNT---T----KLDEVAAAI---GPQTKLVWLESPTNPRQQISDI---RKISEMAHAQGALVLVDNSIMSPVLSR---- 179 (380)
T ss_dssp EECT---T----SHHHHHHHC---CSSEEEEEECSSCTTTCCCCCH---HHHHHHHHTTTCEEEEECTTTCTTTCC----
T ss_pred ccCc---c----hHHHHHHHh---ccCccEEEeccccccccccccH---HHHHHHHHHcCCeEEeecccccccccc----
Confidence 6643 1 677777776 7899999999999999999985 555777899999999999996543322
Q ss_pred hHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCC--hh
Q psy14428 364 AFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSD--PK 441 (583)
Q Consensus 364 ~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~--~~ 441 (583)
++ ..+--|++.|.+|.++-.|--+|=+++. .+ +.+.+.+...........++...+.+.+-+++ -.
T Consensus 180 --Pl-----~~GaDiVvhS~TKyi~GhsDv~~G~v~~-~~----~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~Tl~lR 247 (380)
T d1ibja_ 180 --PL-----ELGADIVMHSATKFIAGHSDVMAGVLAV-KG----EKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKTMALR 247 (380)
T ss_dssp --GG-----GTTCSEEEEETTTTTTCSSCCCCEEEEE-CS----HHHHHHHHHHHHHTTCBCCHHHHHHHHHHHTTHHHH
T ss_pred --cc-----ccCCCEEEecccceeccccCcccccccc-ch----hhHHHHHHhhccccCCcCCHHHHHHHHhcchhhhhh
Confidence 11 2345689999999997666655544432 33 47888888888888889999999999999986 45
Q ss_pred hhhhhhhHHHHHHHHHH
Q psy14428 442 LKAQCDETERIMSQLKI 458 (583)
Q Consensus 442 ~~~~~~~~~~~~~~l~~ 458 (583)
++++.++..++.+.++.
T Consensus 248 m~~~~~nA~~lA~~L~~ 264 (380)
T d1ibja_ 248 IEKQQENARKIAMYLSS 264 (380)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 67777777766666543
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Probab=99.27 E-value=6.4e-10 Score=116.46 Aligned_cols=193 Identities=12% Similarity=-0.037 Sum_probs=134.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcC
Q psy14428 200 HEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSR 279 (583)
Q Consensus 200 ~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G 279 (583)
-.|.......+|.+.+|++++.+ ..+. ++.|+.|..++ +..++.+||.|+.... |......+...|
T Consensus 69 d~Y~~dpt~~~lE~~~a~l~G~e--------~al~--~~SGt~An~~a---~~~l~~~Gd~Vi~~~~-f~~~~~~i~~~g 134 (456)
T d1c7ga_ 69 EAYAGSENFYHLEKTVKELFGFK--------HIVP--THQGRGAENLL---SQLAIKPGQYVAGNMY-FTTTRFHQEKNG 134 (456)
T ss_dssp CCSSSCHHHHHHHHHHHHHHCCS--------EEEE--ESSHHHHHHHH---HHHHCCTTEEEEESSC-CHHHHHHHHHTT
T ss_pred hhccCCchHHHHHHHHHHHhCCC--------eEEE--CCCHHHHHHHH---HHHhcCCCCeEecCcc-hHHHHHHHHHcC
Confidence 45888888899999999999764 4566 88899998874 5567788999887665 555555567788
Q ss_pred CeEEEEecc--------cCCCCCCChhhHHHHHHcCC-CCcEEEEeCCCCCCC-CCCCCHHHHHHHHHHHHhcCeEEEEe
Q psy14428 280 LNVGAYRYF--------DNKTNGLDFAGMMEDIKAMP-ERSILFLQTSSHNPT-GVDLSEDQWRQLAVVVKQRHLYPFFD 349 (583)
Q Consensus 280 ~~~~~v~~~--------d~~~~g~d~~~l~~~l~~~~-~~~~~i~i~~p~NPT-G~~~s~~~~~~l~~~a~~~~i~iI~D 349 (583)
+..+.+... +...+.+|++.+++.++... ....++++.++||+. |.+++.+++++|.++|++||+.+++|
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~I~~~~~~~~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~~~~~~~~~D 214 (456)
T d1c7ga_ 135 ATFVDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGAENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYD 214 (456)
T ss_dssp EEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEE
T ss_pred ceeeeccccccccccccCCccccCCHHHHHHHhhhcCCccceeEEeeecccccccceecHHHHHHHHHHHHHcCCEEEEE
Confidence 887766541 12235789999999997653 455688899999997 57789999999999999999999999
Q ss_pred ccCCC----------CCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHH
Q psy14428 350 MAYLG----------LTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKIL 417 (583)
Q Consensus 350 e~Y~~----------l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~ 417 (583)
++... -.+.+ .....+..-.-.... ++..|++|.++.++ -|+++. .+ +.+.++++..
T Consensus 215 ~a~~~~~a~~~~~~~~~~~~--~~i~~i~~~~~~~ad-~~s~s~~K~~~~~~--GG~i~~--~~----~~l~~~~r~~ 281 (456)
T d1c7ga_ 215 ATRCVENAYFIKEQEAGYEN--VSIKDIVHEMFSYAD-GCTMSGKKDCLVNI--GGFLCM--ND----EEMFSAAKEL 281 (456)
T ss_dssp CTTHHHHHHHHHHHSTTCTT--SCHHHHHHHHHTTCS-EEEEETTTTTCCSS--CEEEEE--SC----HHHHHHHHHH
T ss_pred cchhhcchhhhcccccccCC--CChhhhccccccccc-cEEEeccccccccc--eeEEEc--CC----HHHHHHHHHh
Confidence 98531 11222 122222111111223 44458999987443 377777 54 4676666543
|
| >d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) species: Amycolatopsis mediterranei [TaxId: 33910]
Probab=99.27 E-value=7.3e-11 Score=121.23 Aligned_cols=195 Identities=12% Similarity=0.021 Sum_probs=136.2
Q ss_pred hHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHh-CCCCCEEE
Q psy14428 184 PSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERF-YPGVKTVY 262 (583)
Q Consensus 184 ~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~-~~~gd~Vl 262 (583)
+.-.+++.++++.+. .-+....-...|.+.+|+|++.. +.+. ++.|+.|+.++ +..+ .++||+|+
T Consensus 13 ~~~~~~~~~~l~~g~-~~~~~g~~v~~fE~~~a~~~g~~--------~~v~--~~SGt~Al~la---l~~l~~~~gdeVi 78 (384)
T d1b9ha_ 13 DAERNGLVRALEQGQ-WWRMGGDEVNSFEREFAAHHGAA--------HALA--VTNGTHALELA---LQVMGVGPGTEVI 78 (384)
T ss_dssp HHHHHHHHHHHHTSC-CBTTTCSHHHHHHHHHHHHTTCS--------EEEE--ESCHHHHHHHH---HHHTTCCTTCEEE
T ss_pred HHHHHHHHHHHHcCC-eeecCCHHHHHHHHHHHHHHCcC--------eEEE--eCCHHHHHHHH---HHHcCCCCCCEEE
Confidence 444556666665431 11233334689999999998754 4555 88899999986 3333 56799999
Q ss_pred EcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhc
Q psy14428 263 FPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQR 342 (583)
Q Consensus 263 v~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~ 342 (583)
+|+.+|......+...|++++.++. +++++.+|++.+++.+ .++++++++. +..|... ++.+|.++|+++
T Consensus 79 ~p~~t~~a~~~ai~~~g~~p~~~d~-~~~~~~~d~~~~~~~i---~~~tk~i~~~---~~~g~~~---d~~~i~~~~~~~ 148 (384)
T d1b9ha_ 79 VPAFTFISSSQAAQRLGAVTVPVDV-DAATYNLDPEAVAAAV---TPRTKVIMPV---HMAGLMA---DMDALAKISADT 148 (384)
T ss_dssp EESSSCTHHHHHHHHTTCEEEEECB-CTTTCCBCHHHHHHHC---CTTEEEECCB---CGGGCCC---CHHHHHHHHHHH
T ss_pred Eeccccccccccccccccccccccc-cccccccchhhhcccc---cccccccccc---ccccccc---ccccchhhhhhh
Confidence 9999999999999999999999998 6777889999998876 7788888643 4445444 466778899999
Q ss_pred CeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHH
Q psy14428 343 HLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKIL 417 (583)
Q Consensus 343 ~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~ 417 (583)
+++||+|.+......-.. .. + ....+-.++..+.+|.++ .-.-|.++. .++ ++.+.++..
T Consensus 149 ~i~lieD~a~a~ga~~~g--~~--~---g~~g~~~~~Sf~~~K~i~--~g~GG~i~t--~~~----~~~~~~~~~ 208 (384)
T d1b9ha_ 149 GVPLLQDAAHAHGARWQG--KR--V---GELDSIATFSFQNGKLMT--AGEGGAVVF--PDG----ETEKYETAF 208 (384)
T ss_dssp TCCBCEECTTCTTCEETT--EE--G---GGSSSCEEEECCTTSSSC--SSSCEEEEE--CTT----CHHHHHHHH
T ss_pred hhhhhhhhceecccccCC--Ee--c---Ccccccceeccccccccc--ccccchhhh--hhH----HHHHHHHHH
Confidence 999999999876553210 11 1 112233444455688775 445788888 654 455555554
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Probab=99.27 E-value=2.7e-11 Score=119.33 Aligned_cols=158 Identities=14% Similarity=0.089 Sum_probs=108.7
Q ss_pred CChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEE
Q psy14428 182 VLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTV 261 (583)
Q Consensus 182 ~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~V 261 (583)
+.|.+.+|+.+..... ..+|.+..+.+++|+.||++++ .++++|++ |+|+++|+.++ +..+..+++.+
T Consensus 12 ~~P~v~eAl~~~~~~~-~~~y~~~~~~~~lr~~ia~~~g------~~~~~v~~--tsggtean~~a---~~~~~~~~~~~ 79 (340)
T d1svva_ 12 MHPKILDLMARDNMTQ-HAGYGQDSHCAKAARLIGELLE------RPDADVHF--ISGGTQTNLIA---CSLALRPWEAV 79 (340)
T ss_dssp CCHHHHHHHHHHTTCC-CCSTTCSHHHHHHHHHHHHHHT------CTTSEEEE--ESCHHHHHHHH---HHHHCCTTEEE
T ss_pred CCHHHHHHHHHHhhcC-CCCCCCCHHHHHHHHHHHHHhC------CCcceEEE--cCCHHHHHHHH---HHHHhhhcccc
Confidence 3467888887765432 5678888888999999999996 45679999 99999998875 44566679999
Q ss_pred EEcCCCChhhHHHHh--hcCCeEEEEecccCCCCCCChhhHHHHHHcC---CCCcEEEEeCCCCCCCCCCCCHHHHHHHH
Q psy14428 262 YFPTPTWNGHVRFCT--DSRLNVGAYRYFDNKTNGLDFAGMMEDIKAM---PERSILFLQTSSHNPTGVDLSEDQWRQLA 336 (583)
Q Consensus 262 lv~~P~y~~~~~~~~--~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~---~~~~~~i~i~~p~NPTG~~~s~~~~~~l~ 336 (583)
++..+.+..+..... ..+........ .....+.+...+..... ......++++.+.|++|.+...+++..+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (340)
T d1svva_ 80 IATQLGHISTHETGAIEATGHKVVTAPC---PDGKLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQELEDIS 156 (340)
T ss_dssp EEETTSHHHHSSTTHHHHTTCCEEEECC---TTSCCCHHHHHHHHHHSCSTTSCEEEEEEEESSCTTSCCCCHHHHHHHH
T ss_pred ccccccceeeeecccccccceeeeeccc---ccccccchhHHHHhhhhhcccCCcceeeeecccccccccccHHHhhhhh
Confidence 998888766543222 23333333322 11233444443333222 23344445555556677888999999999
Q ss_pred HHHHhcCeEEEEeccCCC
Q psy14428 337 VVVKQRHLYPFFDMAYLG 354 (583)
Q Consensus 337 ~~a~~~~i~iI~De~Y~~ 354 (583)
+.|.+++.+++.|++|..
T Consensus 157 ~~~~~~g~~~~~d~a~~~ 174 (340)
T d1svva_ 157 ASCKEHGLYLFLDGARLA 174 (340)
T ss_dssp HHHHHHTCEEEEECTTHH
T ss_pred cccccccceeeeecccee
Confidence 999999999999999864
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Probab=99.26 E-value=3.7e-10 Score=114.52 Aligned_cols=208 Identities=13% Similarity=0.142 Sum_probs=152.4
Q ss_pred CCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHH----hhcCCeE
Q psy14428 207 GDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFC----TDSRLNV 282 (583)
Q Consensus 207 G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~----~~~G~~~ 282 (583)
....|.+.+|+..+. +.-++ ++.|..|+..+ +..++++||.|++.+..|......+ ...|.++
T Consensus 51 t~~~le~~la~LEgg--------~~a~~--~sSGMaAi~~~---l~~l~~~gd~vv~~~~~yg~t~~~~~~~~~~~g~~~ 117 (384)
T d1cs1a_ 51 TRDVVQRALAELEGG--------AGAVL--TNTGMSAIHLV---TTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRV 117 (384)
T ss_dssp HHHHHHHHHHHHHTC--------SEEEE--ESSHHHHHHHH---HHHHCCTTCEEEEETTCCHHHHHHHHHHHTTTSCEE
T ss_pred HHHHHHHHHHHHhCC--------CceEE--ecChHHHHHHH---Hhhcccccceecccccccchhhhhhhhhhccccccc
Confidence 346788888888764 34555 78888888874 4456777999999999998875544 4446666
Q ss_pred EEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCC
Q psy14428 283 GAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDK 362 (583)
Q Consensus 283 ~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~ 362 (583)
..+.. .|.+.+++.+ .++++++++-+|.|||..+.+. ++|+++|+++|+++|+|..+..-..-.
T Consensus 118 ~~~d~-------~d~~~~~~~~---~~~t~~v~~EspsNP~l~v~Di---~~i~~ia~~~g~~~vVDNT~atP~~~~--- 181 (384)
T d1cs1a_ 118 LFVDQ-------GDEQALRAAL---AEKPKLVLVESPSNPLLRVVDI---AKICHLAREVGAVSVVDNTFLSPALQN--- 181 (384)
T ss_dssp EEECT-------TCHHHHHHHH---HTCCSEEEEECSCTTTCCCCCH---HHHHHHHHHTTCEEEEECTTTCTTTCC---
T ss_pred ccccC-------CCHHHHHhhc---cccccEEEEeccccccceeccH---HHHhhhhhhcCcEEEEeccccCccccc---
Confidence 65533 1677888777 5788999999999999999874 566778899999999999995333221
Q ss_pred chHHHHHHHHhcCcEEEEecCcccccccCccce-EEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCC--
Q psy14428 363 DAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVG-TFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSD-- 439 (583)
Q Consensus 363 ~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG-~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~-- 439 (583)
++ ..+--|++.|.+|.++-.|-=+| .+++ ++ +.+.+.+...........++...+.+.+-+++
T Consensus 182 ---Pl-----~~GaDiVvhS~TKyi~Ghsdv~~G~vv~--~~----~~~~~~~~~~~~~~G~~~~p~~a~ll~rgL~TL~ 247 (384)
T d1cs1a_ 182 ---PL-----ALGADLVLHSCTKYLNGHSDVVAGVVIA--KD----PDVVTELAWWANNIGVTGGAFDSYLLLRGLRTLV 247 (384)
T ss_dssp ---GG-----GGTCSEEEEETTTTTTCSSCCCCEEEEE--SS----HHHHHHHHHHHHHHTCBCCHHHHHHHHHHHTTHH
T ss_pred ---cc-----ccCCCEEEEccccccccCCCcccccccC--Cc----hhhhhhhhhhhhhhhhccccccHHHHhhccchhH
Confidence 11 23456899999999965555455 4555 43 46778888877778888999999999999986
Q ss_pred hhhhhhhhhHHHHHHHHH
Q psy14428 440 PKLKAQCDETERIMSQLK 457 (583)
Q Consensus 440 ~~~~~~~~~~~~~~~~l~ 457 (583)
-.++++.++...+.+.++
T Consensus 248 lRm~~~~~nA~~lA~~L~ 265 (384)
T d1cs1a_ 248 PRMELAQRNAQAIVKYLQ 265 (384)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 456677766666666554
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.25 E-value=3.9e-11 Score=125.62 Aligned_cols=221 Identities=14% Similarity=0.032 Sum_probs=144.0
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHH-HHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEec
Q psy14428 209 AKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVG-TAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRY 287 (583)
Q Consensus 209 ~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~-~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~ 287 (583)
..+...+.+++.+..|.+-. ..-.+ |+|++++...+ ...++...++++.|+++...+......+..+|++++.|+.
T Consensus 93 ~~le~~~~~~~~~l~g~~~~-~~~~~--~~~~t~~~~~~~l~a~~~~~~~~~~vi~~~~~H~s~~~a~~~~g~~~~~v~~ 169 (445)
T d3bc8a1 93 NKITNSLVLNVIKLAGVHSV-ASCFV--VPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIEN 169 (445)
T ss_dssp HHHHHHHHHHHHHHHTCTTC-CEEEE--ESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECC
T ss_pred HHHHHHHHHHHHHHhCCCcc-cCccc--cccchHHHHHHHHHHHHHhCCCCCEEEEcCcccHHHHHHHHHcCCeeEEEEe
Confidence 34555555555444443322 23444 67776554433 2223345666899999999999999999999999888853
Q ss_pred -ccCCCCCCChhhHHHHHHcC-CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchH
Q psy14428 288 -FDNKTNGLDFAGMMEDIKAM-PERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAF 365 (583)
Q Consensus 288 -~d~~~~g~d~~~l~~~l~~~-~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~ 365 (583)
.+.+++.+|++.+++++++. .+++.+++++.|+|++|.+-+ +++|.++|+++|+++++|++|+...... .
T Consensus 170 ~~~~~~~~id~~~l~~~i~~~~~~~~~~v~~~~~~~~~G~~~~---~~~i~~~~~~~~~~l~vD~a~~~~~~~~-----~ 241 (445)
T d3bc8a1 170 VLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDR---LEELAVICANYDIPHVVNNAYGLQSSKC-----M 241 (445)
T ss_dssp EEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTTCHHH-----H
T ss_pred eccCcccccCHHHHHHHHHhccccCeEEEEEeCCCCCCeeehh---HHHHHHHHHHhCCcEEEEccchhhhhhc-----c
Confidence 13445789999999999764 346888999999999998866 6777889999999999999997654211 1
Q ss_pred HHHHH-HHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhh
Q psy14428 366 SLRYF-AKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKA 444 (583)
Q Consensus 366 ~~~~~-~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~ 444 (583)
..... ....+--++..|..|.++.| .-.|+++. .+ ..+++.+.........+.+.+.+++....+....+..
T Consensus 242 ~~~~~~~~~~~vd~~~~s~hK~~~~p-~g~~~l~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 314 (445)
T d3bc8a1 242 HLIQQGARVGRIDAFVQSLDKNFMVP-VGGAIIAG--FN----EPFIQDISKMYPGRASASPSLDVLITLLSLGCSGYRK 314 (445)
T ss_dssp HHHHHHHHHSCCCEEEEEHHHHHSCC-SSCEEEEE--SC----HHHHHHHHHHSCSCBCSHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhccCcCCcceEEecCccccccC-CCCceeee--CC----hHHHHHHHHHHhhcccCcchHHHHHHHHHHhhhcchh
Confidence 11111 12222336788889988744 34677777 54 4667766655444444555566666655554444443
Q ss_pred hhh
Q psy14428 445 QCD 447 (583)
Q Consensus 445 ~~~ 447 (583)
...
T Consensus 315 ~~~ 317 (445)
T d3bc8a1 315 LLK 317 (445)
T ss_dssp HHH
T ss_pred hHH
Confidence 333
|
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.25 E-value=4.9e-10 Score=114.05 Aligned_cols=235 Identities=12% Similarity=0.093 Sum_probs=164.0
Q ss_pred CChHHHHHHHHHhccCCCCCCCC--CCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCC
Q psy14428 182 VLPSVKEAERRIYEKNLDHEYAN--IGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVK 259 (583)
Q Consensus 182 ~~~~v~~a~~~~~~~~~~~~Y~~--~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd 259 (583)
.++...+.......+...+-|+- .+-...|.+.||+..+. +..++ ++.|+.|+..+ +..++++||
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~Y~R~~nPt~~~LE~~la~LEgg--------~~a~~--~sSGMaAi~~~---l~~l~~~Gd 107 (398)
T d1qgna_ 41 FFNKTSELIDFKEKRRASFEYGRYGNPTTVVLEEKISALEGA--------ESTLL--MASGMCASTVM---LLALVPAGG 107 (398)
T ss_dssp CBSSHHHHHHHHTTSSCCCCBGGGCCHHHHHHHHHHHHHHTC--------SEEEE--ESCHHHHHHHH---HHHHSCSSC
T ss_pred EeCCHHHHHHHhcCCcCCceecCCCChHHHHHHHHHHHHhCC--------ceEEE--ecCcchHHHHH---Hhhcccccc
Confidence 34444444332222222344543 33446788899988754 34556 88888888874 445677799
Q ss_pred EEEEcCCCChhhHHHH----hhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHH
Q psy14428 260 TVYFPTPTWNGHVRFC----TDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQL 335 (583)
Q Consensus 260 ~Vlv~~P~y~~~~~~~----~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l 335 (583)
.|++....|......+ +..|+++..++. . +.+..++.+. .++++++++-+|.|||..+.+ +++|
T Consensus 108 ~iv~~~~~Yg~t~~l~~~~~~~~gi~~~~~~~---~----~~~~~~~~~~--~~~t~~v~~EspsNP~l~v~D---i~~i 175 (398)
T d1qgna_ 108 HIVTTTDCYRKTRIFIETILPKMGITATVIDP---A----DVGALELALN--QKKVNLFFTESPTNPFLRCVD---IELV 175 (398)
T ss_dssp EEEEETTSCHHHHHHHHHTGGGGTCEEEEECS---S----CHHHHHHHHH--HSCEEEEEEESSCTTTCCCCC---HHHH
T ss_pred cccccccccchhhhhhcccccccccccccccc---c----chhhhhhhhc--cccceEEEccCccccccccch---HHHH
Confidence 9999999999886665 445777776643 1 3343433332 578999999999999998887 5667
Q ss_pred HHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHH
Q psy14428 336 AVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLK 415 (583)
Q Consensus 336 ~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~ 415 (583)
+++|+++++++|+|..+..-..-. ++ ..+--|++.|.+|.++-.|--+|-+++ .+ +++++.++
T Consensus 176 a~ia~~~g~~~vVDnT~atP~~~~------Pl-----~~GaDiVihS~TKy~~Ghsdv~~G~v~--~~----~~~~~~~~ 238 (398)
T d1qgna_ 176 SKLCHEKGALVCIDGTFATPLNQK------AL-----ALGADLVLHSATKFLGGHNDVLAGCIS--GP----LKLVSEIR 238 (398)
T ss_dssp HHHHHHTTCEEEEECTTTCTTTCC------TT-----TTTCSEEEECTTTTTTCSSSCCCEEEE--EC----HHHHHHHH
T ss_pred HHHHhhcCCEEEecceeeccccCC------ch-----hhCCCEEEEechhhcCcccceeehhhc--ch----hhhhhhhh
Confidence 888999999999999986433221 11 123458899999999766666665555 23 57888888
Q ss_pred HHHhccccCCChHHHHHHHHHhCC--hhhhhhhhhHHHHHHHHHH
Q psy14428 416 ILIRGFYSNPPIHGARIVTEILSD--PKLKAQCDETERIMSQLKI 458 (583)
Q Consensus 416 ~~~~~~~~~~s~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~l~~ 458 (583)
...+......++...+.+.+-+++ -.++++.++...+.+.++.
T Consensus 239 ~~~~~~G~~l~p~~a~ll~rgl~TL~lRm~~~~~nA~~lA~~L~~ 283 (398)
T d1qgna_ 239 NLHHILGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEA 283 (398)
T ss_dssp HHHHHHCCCCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhcccCCCcCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHh
Confidence 888888889999999999999885 4567777777666666643
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Probab=99.22 E-value=4.2e-10 Score=118.39 Aligned_cols=145 Identities=14% Similarity=0.138 Sum_probs=108.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHH----hCCCCCEEEEcCCCChhhHHH
Q psy14428 199 DHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLER----FYPGVKTVYFPTPTWNGHVRF 274 (583)
Q Consensus 199 ~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~----~~~~gd~Vlv~~P~y~~~~~~ 274 (583)
...|....+..+|+++++++++. ++++. +++|++|...+..++.. .....+.++...+.+..+...
T Consensus 68 d~~y~~~~~~~~le~~~a~l~g~--------~~~~~--~~sGt~A~~~a~~~~~~~g~~~~~~~~~~i~~~~h~~t~~~~ 137 (465)
T d1ax4a_ 68 DEAYAGSRNYYDLKDKAKELFNY--------DYIIP--AHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAH 137 (465)
T ss_dssp CCCSSSCHHHHHHHHHHHHHHCC--------CEEEE--ESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEESSCCHHHHHH
T ss_pred hhhhccChHHHHHHHHHHHHHCC--------CEEEE--CCCcHHHHHHHHHHHHHHHHhcCCCCCeEEeccchhhhhHHH
Confidence 45688889999999999999853 57777 99999999987555432 122234566777777777778
Q ss_pred HhhcCCeEEEEecc--------cCCCCCCChhhHHHHHHcCCC-CcEEEEeCCCCCCCC-CCCCHHHHHHHHHHHHhcCe
Q psy14428 275 CTDSRLNVGAYRYF--------DNKTNGLDFAGMMEDIKAMPE-RSILFLQTSSHNPTG-VDLSEDQWRQLAVVVKQRHL 344 (583)
Q Consensus 275 ~~~~G~~~~~v~~~--------d~~~~g~d~~~l~~~l~~~~~-~~~~i~i~~p~NPTG-~~~s~~~~~~l~~~a~~~~i 344 (583)
....|...+.++.. ++..+.+|++.+++.++...+ ...++++..+||..| .+++.+.+++|.++|++||+
T Consensus 138 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g~ 217 (465)
T d1ax4a_ 138 VELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGI 217 (465)
T ss_dssp HHHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHcCCeeecccccccCCCCCCCCccCccCHHHHHHHHHhhccccccceeeccccccCceecCCHHHHHHHHHHHHHcCC
Confidence 88889888766431 223466899999999876543 445566666666654 56899999999999999999
Q ss_pred EEEEeccCC
Q psy14428 345 YPFFDMAYL 353 (583)
Q Consensus 345 ~iI~De~Y~ 353 (583)
++|.|+++.
T Consensus 218 ~l~~D~~~~ 226 (465)
T d1ax4a_ 218 FVVMDSARF 226 (465)
T ss_dssp CEEEECTTH
T ss_pred EEEEECcch
Confidence 999999975
|
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Probab=99.19 E-value=1.5e-09 Score=112.06 Aligned_cols=191 Identities=12% Similarity=0.079 Sum_probs=138.2
Q ss_pred CChHHHHHHHHHhccCCCCCCCC--C------CCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHH-
Q psy14428 182 VLPSVKEAERRIYEKNLDHEYAN--I------GGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLE- 252 (583)
Q Consensus 182 ~~~~v~~a~~~~~~~~~~~~Y~~--~------~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~- 252 (583)
+++.+.+++.+...+........ . .-+.+.|+.+|++++. ..+++|++ |+|+++++..+...+.
T Consensus 34 ~p~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~R~~ia~~l~~-----~~~~~i~~--~~~~T~~~~~~~~~~~~ 106 (405)
T d1jf9a_ 34 KPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINA-----RSAEELVF--VRGTTEGINLVANSWGN 106 (405)
T ss_dssp CCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTC-----SCGGGEEE--ESSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHHHHHHHHHcCC-----CCcccccc--cCcHHHHHHHHHhcccc
Confidence 56788888777665421100000 1 1245678888888863 24579999 9999999987643322
Q ss_pred HhCCCCCEEEEcCCCChhhH----HHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCC
Q psy14428 253 RFYPGVKTVYFPTPTWNGHV----RFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLS 328 (583)
Q Consensus 253 ~~~~~gd~Vlv~~P~y~~~~----~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s 328 (583)
....+||.|++.+-.|+... ...+..|++++.+|+ +++ ..+|++.+++.+ .++++++.++.-+|.||.+++
T Consensus 107 ~~~~~g~~il~~~~e~~s~~~~~~~~a~~~g~~v~~~~~-~~~-g~~~~~~~~~~i---~~~t~lv~~~~v~~~tG~~~p 181 (405)
T d1jf9a_ 107 SNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPL-NPD-GTLQLETLPTLF---DEKTRLLAITHVSNVLGTENP 181 (405)
T ss_dssp HHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECB-CTT-SCBCGGGHHHHC---CTTEEEEEEESBCTTTCCBCC
T ss_pred cccCCCCEEEEEeCcccchHHHHHHHHHHcCcEEEEECC-CCC-CcCCHHHHHHhc---cCCcEEEEEecCCCcccccCc
Confidence 34566999999998887754 344667999999998 543 678998888776 789999999999999999999
Q ss_pred HHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEE
Q psy14428 329 EDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSV 399 (583)
Q Consensus 329 ~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~ 399 (583)
.++ |.++|+++|+++++|-+..--... ..+.. .+--+++.|+.|.+|-+| +|++.+
T Consensus 182 i~~---i~~~~~~~g~~~~vD~~q~~g~~~------id~~~----~~~D~~~~s~hK~~Gp~G--~g~l~v 237 (405)
T d1jf9a_ 182 LAE---MITLAHQHGAKVLVDGAQAVMHHP------VDVQA----LDCDFYVFSGHKLYGPTG--IGILYV 237 (405)
T ss_dssp HHH---HHHHHHHTTCEEEEECTTTTTTSC------CCHHH----HTCSEEEEEGGGTTSCSS--CEEEEE
T ss_pred hHH---hhhHHHHcCCeeecccceeccccc------cchhh----cCCceeeccccccccCCC--ceeeee
Confidence 655 577889999999999986543322 11222 234588999999987666 799998
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Probab=99.12 E-value=4e-09 Score=107.24 Aligned_cols=209 Identities=12% Similarity=0.053 Sum_probs=150.2
Q ss_pred CCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHh----hcCCeE
Q psy14428 207 GDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCT----DSRLNV 282 (583)
Q Consensus 207 G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~----~~G~~~ 282 (583)
-...|.+.+|+..+. +..++ ++.|+.|+..+ +..++++||.|++....|......++ ..|+++
T Consensus 59 t~~~le~~la~LEg~--------~~a~~--~~SGMaAi~~~---l~~l~~~Gd~iv~~~~~Yg~T~~l~~~~l~~~Gi~~ 125 (391)
T d1cl1a_ 59 THFSLQQAMCELEGG--------AGCVL--FPCGAAAVANS---ILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVTT 125 (391)
T ss_dssp HHHHHHHHHHHHHTC--------SEEEE--ESSHHHHHHHH---HHHHCCTTCEEEEETTSCHHHHHHHHHTGGGGTCEE
T ss_pred hHHHHHHHHHHHhCC--------ccEEE--eccccceeeeh---hhcccCCCCeEEEecccccchhhhhhhccccccccc
Confidence 346778888887653 34556 88888898874 44556779999999999998776654 457877
Q ss_pred EEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHH--hcCeEEEEeccCCCCCCCCC
Q psy14428 283 GAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVK--QRHLYPFFDMAYLGLTSGDF 360 (583)
Q Consensus 283 ~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~--~~~i~iI~De~Y~~l~~~~~ 360 (583)
..++. . |.+.+++.+ .++++++++-+|.|||..+.+.+.+ +++|+ ++++++|+|+.+.....-.
T Consensus 126 ~~~d~---~----d~~~~~~~i---~~~t~~i~~EtpsNP~l~v~Di~~i---~~~a~~~~~g~~~vVDnT~atP~~~~- 191 (391)
T d1cl1a_ 126 SWFDP---L----IGADIVKHL---QPNTKIVFLESPGSITMEVHDVPAI---VAAVRSVVPDAIIMIDNTWAAGVLFK- 191 (391)
T ss_dssp EEECT---T----CGGGGGGTC---CTTEEEEEEESSCTTTCCCCCHHHH---HHHHHHHCTTCEEEEECTTTTTTSSC-
T ss_pred ccccC---c----ccccccccc---ccccceeeecccCcccccccccHHH---HHHHHhccCCcEEEEeccccchhhhc-
Confidence 77644 1 556665554 6789999999999999999986655 45554 4699999999996544432
Q ss_pred CCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCC-
Q psy14428 361 DKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSD- 439 (583)
Q Consensus 361 ~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~- 439 (583)
++ ..+--|++.|.+|.++-.|-=+|=+++. . +++.+.+...........++..++.+.+-+++
T Consensus 192 -----Pl-----~~GaDivvhS~TKy~~GhsdvlgG~vv~-~-----~~~~~~~~~~~~~~G~~~~p~~a~ll~rgl~TL 255 (391)
T d1cl1a_ 192 -----AL-----DFGIDVSIQAATKYLVGHSDAMIGTAVC-N-----ARCWEQLRENAYLMGQMVDADTAYITSRGLRTL 255 (391)
T ss_dssp -----GG-----GGTCSEEEEETTTTTTCSSSCCCEEEEE-C-----TTTHHHHHHHHHHTTCCCCHHHHHHHHHHHTTH
T ss_pred -----cc-----ccccceEEeecchhccccccccccceec-c-----ccccccchhhhhcccccCCchhhhhhhccchhH
Confidence 11 2345689999999997556545544442 3 25667777777777888999999999998886
Q ss_pred -hhhhhhhhhHHHHHHHHHH
Q psy14428 440 -PKLKAQCDETERIMSQLKI 458 (583)
Q Consensus 440 -~~~~~~~~~~~~~~~~l~~ 458 (583)
-.++++.++...+.+.++.
T Consensus 256 ~lR~~~~~~nA~~vA~~L~~ 275 (391)
T d1cl1a_ 256 GVRLRQHHESSLKVAEWLAE 275 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 4566776666666666543
|
| >d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: O-acetyl-L-homoserine sulfhydrylase species: Thermus thermophilus [TaxId: 274]
Probab=99.11 E-value=4e-09 Score=107.92 Aligned_cols=215 Identities=14% Similarity=0.040 Sum_probs=147.2
Q ss_pred CCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHH----hhcCCeE
Q psy14428 207 GDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFC----TDSRLNV 282 (583)
Q Consensus 207 G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~----~~~G~~~ 282 (583)
-...|.+.||+..+. +.-++ ++.|..|+..+ +..++++||.|+++...|.+....+ ...|+++
T Consensus 59 T~~~LE~~la~LE~~--------~~a~~--~~SGmaAi~~~---~~~l~~~gd~il~~~~~Yg~t~~l~~~~~~~~gi~~ 125 (421)
T d2ctza1 59 TVDVLEKRLAALEGG--------KAALA--TASGHAAQFLA---LTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEV 125 (421)
T ss_dssp HHHHHHHHHHHHHTC--------SEEEE--ESSHHHHHHHH---HHHHCCTTCEEEECSCCCHHHHHHHHTHHHHTTCEE
T ss_pred HHHHHHHHHHHHhCC--------CeEEE--ecChHHHHHHH---HHhhcccccceeecCCcCCchhHHHHHHHhhccccc
Confidence 346788888888764 23445 77778887764 4556777999999999998876655 4568888
Q ss_pred EEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCC--CCCCCCC
Q psy14428 283 GAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYL--GLTSGDF 360 (583)
Q Consensus 283 ~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~--~l~~~~~ 360 (583)
..++. .+ ..+..++.+ .++++++++-+|.|||..+.+ +++|+++|+++|+++|+|+.+. ++...+
T Consensus 126 ~~~d~---~~---~~~~~~~~~---~~~t~li~~EtpsNP~l~v~D---i~~i~~iA~~~g~~~vvDnT~a~tP~~~~P- 192 (421)
T d2ctza1 126 RFTSR---EE---RPEEFLALT---DEKTRAWWVESIGNPALNIPD---LEALAQAAREKGVALIVDNTFGMGGYLLRP- 192 (421)
T ss_dssp EECCT---TC---CHHHHHHHC---CTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECGGGGGGTSCCG-
T ss_pred eeccc---cc---Ccchhcccc---CCCceEEEEcCCCcceeEecc---hHHHHHHHHhcCCceEecccccccceeccc-
Confidence 77644 11 233333333 678999999999999999987 5666888999999999999986 333321
Q ss_pred CCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCch--------------------------hHHHHHHHH
Q psy14428 361 DKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSD--------------------------ETERIMSQL 414 (583)
Q Consensus 361 ~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~--------------------------~~~~li~~l 414 (583)
+ ..+--|++.|.+|.++-.|--+|=+++...+.. ....+.+..
T Consensus 193 ------l-----~~GaDiVvhS~TKyl~GHsD~l~G~vv~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (421)
T d2ctza1 193 ------L-----AWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKAR 261 (421)
T ss_dssp ------G-----GGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHH
T ss_pred ------c-----ccCCcEEEEechhhccCCCCeEEEEEEcCCcchhhhcccccccCCchhhhhhHHHHHhccHHHHHHHH
Confidence 1 234468999999999777777776665222100 000122222
Q ss_pred HHHHhccccCCChHHHHHHHHHhCC--hhhhhhhhhHHHHHHHHHH
Q psy14428 415 KILIRGFYSNPPIHGARIVTEILSD--PKLKAQCDETERIMSQLKI 458 (583)
Q Consensus 415 ~~~~~~~~~~~s~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~l~~ 458 (583)
....+....+.++...+.+.+-+++ -.+++|.++...+.+.++.
T Consensus 262 ~~~~~~~G~~~sP~~a~l~~rgl~TL~lRm~~~~~nA~~vA~~L~~ 307 (421)
T d2ctza1 262 VDGLRDQGQALGPFEAWVVLLGMETLSLRAERHVENTLHLAHWLLE 307 (421)
T ss_dssp HTHHHHHCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhccCCCCHHHHHHHhcCCcchhhHHHHHHHHHHHHHhhhcc
Confidence 2334556788999999999999986 4566777766666655543
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Probab=99.10 E-value=4.4e-09 Score=104.07 Aligned_cols=172 Identities=13% Similarity=0.053 Sum_probs=121.5
Q ss_pred CCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchh
Q psy14428 163 PKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSG 242 (583)
Q Consensus 163 ~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~ 242 (583)
|..++|+..++. | +.|.+.+|+.+.... ....|.+.....++|+.+|++++. +..|++ |+||++
T Consensus 2 ~~~~~f~s~n~~---g---~~P~v~~A~~~a~~~-~~~~~~~~~~~~~l~~~la~~~g~-------~~~v~f--~~sGt~ 65 (345)
T d1v72a1 2 PPALGFSSDNIA---G---ASPEVAQALVKHSSG-QAGPYGTDELTAQVKRKFCEIFER-------DVEVFL--VPTGTA 65 (345)
T ss_dssp CCCCBCSCGGGC---C---CCHHHHHHHHHTTSS-CCCSTTCSHHHHHHHHHHHHHHTS-------CCEEEE--ESCHHH
T ss_pred CCCcCcCCCCCC---C---CCHHHHHHHHHHhcc-CccccCCCHHHHHHHHHHHHHHCC-------CcEEEE--CCchHH
Confidence 345667654432 2 356788888775433 346677778888999999999963 246778 999999
Q ss_pred HHHHHHHHHHHhCCCCCEEEEcCCCChhhH---HHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcC----CCCcEEEE
Q psy14428 243 SLRVGTAFLERFYPGVKTVYFPTPTWNGHV---RFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAM----PERSILFL 315 (583)
Q Consensus 243 al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~---~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~----~~~~~~i~ 315 (583)
|...+ +...+.+++.+++......... ......+..+..++. ..+...+++.+++.+... ......++
T Consensus 66 An~~a---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 140 (345)
T d1v72a1 66 ANALC---LSAMTPPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVD--GPAAKLDIVRLRERTREKVGDVHTTQPACV 140 (345)
T ss_dssp HHHHH---HHTSCCTTEEEEECTTSHHHHSSTTHHHHHTTSCEEEECC--CGGGCCCHHHHHHHTTSSTTCTTSCEEEEE
T ss_pred HHHHH---HHHHHhcCCccccccccceeeechhhHHHhcCcccccccc--cccccccHHHhhhhhcccccccccccceee
Confidence 98874 4556666777776665533322 233444666665544 233567888888877543 12344677
Q ss_pred eCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCC
Q psy14428 316 QTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGL 355 (583)
Q Consensus 316 i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l 355 (583)
.+++.|++|...+.++++++.++|++++++++.|+++...
T Consensus 141 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~D~~~~~~ 180 (345)
T d1v72a1 141 SITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFAN 180 (345)
T ss_dssp EEESSCTTSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHH
T ss_pred eeeccccccccccchhhhhHHHHHHhcCceeeecccccce
Confidence 7899999999999999999999999999999999998643
|
| >d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL2 [TaxId: 5722]
Probab=99.09 E-value=1.1e-09 Score=109.11 Aligned_cols=207 Identities=13% Similarity=0.087 Sum_probs=144.5
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHH----HhhcCCeEEEE
Q psy14428 210 KFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRF----CTDSRLNVGAY 285 (583)
Q Consensus 210 ~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~----~~~~G~~~~~v 285 (583)
.|.+.+|+..+. +..++ ++.|+.|+..+ +..++++||.|+++.+.|...... ++..|+++..+
T Consensus 2 aLE~~la~Leg~--------~~a~~--~sSGMaAi~~~---l~~ll~~Gd~iv~~~~~Yg~t~~~~~~~l~~~gi~~~~~ 68 (331)
T d1pffa_ 2 ALEGKIAKLEHA--------EACAA--TASGMGAIAAS---VWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFI 68 (331)
T ss_dssp HHHHHHHHHHTC--------SEEEE--ESSHHHHHHHH---HHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEE
T ss_pred HHHHHHHHHhCC--------CeEEE--ECCHHHHHHHH---HHHHhCCCCEEEEeCCCchHHHHHHHHHHHhcCeEEEEe
Confidence 477888888754 34556 78888888764 445667799999999999876554 45679988877
Q ss_pred ecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchH
Q psy14428 286 RYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAF 365 (583)
Q Consensus 286 ~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~ 365 (583)
+.. |.+.+++++ .++++++++-+|.||+..+...+.+.+++ ++++++++|+|+.+.....-.
T Consensus 69 d~~-------d~~~~~~~i---~~~t~~i~~Es~~np~~~v~d~~~~~~~~--a~~~~~~~vVDnT~atp~~~~------ 130 (331)
T d1pffa_ 69 DMA-------VPGNIEKHL---KPNTRIVYFETPANPTLKVIDIEDAVKQA--RKQKDILVIVDNTFASPILTN------ 130 (331)
T ss_dssp CTT-------STTHHHHTC---CTTEEEEEEESSCTTTCCCCCHHHHHHHH--TTSSSCEEEEECTTTHHHHCC------
T ss_pred ccc-------chhhHhhhc---ccccceeeeecccccccccccchhhhhhh--hcccCceEEeecccccccccc------
Confidence 552 566776665 78999999999999999999866654432 357899999999985322111
Q ss_pred HHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHH--HHhccccCCChHHHHHHHHHhCC--hh
Q psy14428 366 SLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKI--LIRGFYSNPPIHGARIVTEILSD--PK 441 (583)
Q Consensus 366 ~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~--~~~~~~~~~s~~~q~~~~~~l~~--~~ 441 (583)
+-..+--|++.|.+|.++-.|--+|-+++ -+ ++.+.+.+. .........++...+.+.+-+++ -.
T Consensus 131 -----pl~~GaDiVv~S~TKy~~Gh~d~~~G~v~--~~----~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~Tl~~R 199 (331)
T d1pffa_ 131 -----PLDLGVDIVVHSATKYINGHTDVVAGLVC--SR----ADIIAKVKSQGIKDITGAIISPHDAWLITRGTLTLDMR 199 (331)
T ss_dssp -----GGGGTCSEEEEETTTTTSSSSSCCCEEEE--EC----HHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred -----ccccCCCEEEecchhhcCCCCcccccccc--cc----ccchhhhhhhhhhhccCCCCCHHHHHHHHHHHHHHHHH
Confidence 11233458999999999655555555554 23 234444332 33445778888999988888874 46
Q ss_pred hhhhhhhHHHHHHHHHH
Q psy14428 442 LKAQCDETERIMSQLKI 458 (583)
Q Consensus 442 ~~~~~~~~~~~~~~l~~ 458 (583)
++++.++...+.+.++.
T Consensus 200 m~~~~~nA~~lA~~L~~ 216 (331)
T d1pffa_ 200 VKRAAENAQKVAEFLHE 216 (331)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 77777777776666654
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.09 E-value=1.1e-09 Score=114.10 Aligned_cols=197 Identities=12% Similarity=0.054 Sum_probs=130.6
Q ss_pred cCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEec-ccCCCCCCChhhHHHHHHcC--CCCcEE
Q psy14428 237 GISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRY-FDNKTNGLDFAGMMEDIKAM--PERSIL 313 (583)
Q Consensus 237 t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~-~d~~~~g~d~~~l~~~l~~~--~~~~~~ 313 (583)
..|++.++.++....+.. .+++.|+++.-..+.....+...|++++.++. .+.+++.+|++++++.+++. ..++.+
T Consensus 136 ~~~t~~~~~~~l~a~r~~-~~~~~vi~s~~~H~s~~k~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~ 214 (434)
T d2z67a1 136 PISTGMSISLCLSAARKK-YGSNVVIYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPC 214 (434)
T ss_dssp SSCHHHHHHHHHHHHHHH-HCCCEEEEECCCCHHHHHHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHHHTTCCEE
T ss_pred CcHHHHHHHHHHHHHHHh-hcCceEEEeccCCHHHHHHHHHhCCcceEEEeecCCCccCCCHHHHHHHHHhhhhcCCceE
Confidence 444444554432222222 24899999999998888889999999888864 23444678999999999753 346778
Q ss_pred EEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCcc
Q psy14428 314 FLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGER 393 (583)
Q Consensus 314 i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlR 393 (583)
+++.+|++++|.+-+ +++|.++|+++|+++++|++|+..... ...........+--+++.|++|.++ .+.-
T Consensus 215 v~~~~~~~~~g~~~~---l~~i~~~~~~~~~~l~vD~a~g~~~~~-----~~~~~~~~~~~~~D~~~~s~hK~l~-~~~g 285 (434)
T d2z67a1 215 VLSTLTFFPPRNSDD---IVEIAKICENYDIPHIINGAYAIQNNY-----YLEKLKKAFKYRVDAVVSSSDKNLL-TPIG 285 (434)
T ss_dssp EEEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTTCHH-----HHHHHHHHHTSCCSEEEEEHHHHHC-CCSS
T ss_pred EEeccCcCCCccccC---HHHHHHHHHHhCCeEEEeccchhhhhh-----ccccccccccCCcceEEEcCccccc-cCCC
Confidence 888999999998766 667789999999999999999754311 0111111222334567889999987 4444
Q ss_pred ceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCChhhhhhhhhH
Q psy14428 394 VGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDET 449 (583)
Q Consensus 394 iG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~ 449 (583)
.|++.. .+ +.+++++...........+....++....+....+....++.
T Consensus 286 ~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~a~l~~~~~~g~~~~~~~~ 335 (434)
T d2z67a1 286 GGLVYS--TD----AEFIKEISLSYPGRASATPVVNTLVSLLSMGSKNYLELVKNQ 335 (434)
T ss_dssp CEEEEE--SC----HHHHHHHHTTSCSCBCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccc--Cc----HHHHHHHHhhcccccccchHHHHHHHHHHHHHhcchhHHHHH
Confidence 567776 54 467777776544444455555566665566554444444333
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Probab=99.01 E-value=2.4e-08 Score=101.45 Aligned_cols=233 Identities=13% Similarity=0.093 Sum_probs=157.0
Q ss_pred CChHHHHHHHHHhccCCCCCCCC--CCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCC
Q psy14428 182 VLPSVKEAERRIYEKNLDHEYAN--IGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVK 259 (583)
Q Consensus 182 ~~~~v~~a~~~~~~~~~~~~Y~~--~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd 259 (583)
.++...+.......+...+-|+- .+-...|.+.+++..+. +.-++ +++|+.|+..+ +..++.+||
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~YsR~~nPT~~~le~~la~LEg~--------~~a~~--~sSGmaAi~~~---~l~l~~~gd 99 (394)
T d1e5ea_ 33 VFDNCQQGGNRFAGQESGYIYTRLGNPTVSNLEGKIAFLEKT--------EACVA--TSSGMGAIAAT---VLTILKAGD 99 (394)
T ss_dssp CCSSHHHHHHHHTTSSCSCCBTTTCCHHHHHHHHHHHHHHTC--------SEEEE--ESSHHHHHHHH---HHHHCCTTC
T ss_pred eeCCHHHHHHhhcCCcCCceecCCCCHHHHHHHHHHHHHhCC--------cceee--eccchHHHHHH---HHhhccccc
Confidence 44555544433333322344543 22345688888887754 33455 77888888864 345667799
Q ss_pred EEEEcCCCChhhHHH----HhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHH
Q psy14428 260 TVYFPTPTWNGHVRF----CTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQL 335 (583)
Q Consensus 260 ~Vlv~~P~y~~~~~~----~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l 335 (583)
.|++.+..|...... +...|+++..++.. |.+.+++.+ .++++++++-+|.|||..+.+.+.+
T Consensus 100 ~vv~~~~~yg~t~~~~~~~~~~~gi~~~~~d~~-------d~~~~~~~i---~~~t~lv~~Etp~NP~l~v~Di~~~--- 166 (394)
T d1e5ea_ 100 HLISDECLYGCTHALFEHALTKFGIQVDFINTA-------IPGEVKKHM---KPNTKIVYFETPANPTLKIIDMERV--- 166 (394)
T ss_dssp EEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT-------STTHHHHHC---CTTEEEEEEESSCTTTCCCCCHHHH---
T ss_pred ccccccceeehhhHhHHHHhhccceeeeccCCC-------CHHHHHHhh---cccccEEEEeccCCcceeeehhhhh---
Confidence 999999999776544 55678888887652 566777776 7889999999999999999886644
Q ss_pred HHHHH-hcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccc-eEEEEEcCCchhHHHHHHH
Q psy14428 336 AVVVK-QRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERV-GTFSVLTPTSDETERIMSQ 413 (583)
Q Consensus 336 ~~~a~-~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRi-G~lv~~~p~~~~~~~li~~ 413 (583)
++.++ ++++++|+|..+..-..-. ++ ..+--|++.|.+|.++-.|.=+ |.+++ + .+.+..
T Consensus 167 ~~~~~~~~g~~vvvDnT~atP~~~~------Pl-----~~GaDiVvhS~TKy~~GhsDv~~G~v~~--~-----~~~~~~ 228 (394)
T d1e5ea_ 167 CKDAHSQEGVLVIADNTFCSPMITN------PV-----DFGVDVVVHSATKYINGHTDVVAGLICG--K-----ADLLQQ 228 (394)
T ss_dssp HHHHHTSTTCEEEEECTTTCTTTCC------GG-----GGTCSEEEEETTTTTTCSSCCCCEEEEE--C-----HHHHHH
T ss_pred hhccccccCeEEEecCcccCcccCC------ch-----hcCCCEEEechhhhcCCCcccccccccc--h-----hhHHHH
Confidence 55454 5689999999986444332 11 2244589999999996555444 44555 4 355554
Q ss_pred HHH--HHhccccCCChHHHHHHHHHhCC--hhhhhhhhhHHHHHHHHHH
Q psy14428 414 LKI--LIRGFYSNPPIHGARIVTEILSD--PKLKAQCDETERIMSQLKI 458 (583)
Q Consensus 414 l~~--~~~~~~~~~s~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~l~~ 458 (583)
.+. .+.......++...+.+.+-+++ -.++++.++...+.+.++.
T Consensus 229 ~~~~~~~~~~G~~lsp~~a~ll~rgl~TL~lRm~r~~~nA~~lA~~L~~ 277 (394)
T d1e5ea_ 229 IRMVGIKDITGSVISPHDAWLITRGLSTLNIRMKAESENAMKVAEYLKS 277 (394)
T ss_dssp HHHTCCCCCCCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhCCCCChHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHhh
Confidence 443 33456778899999999999986 4677777777776666643
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.96 E-value=2.5e-08 Score=101.30 Aligned_cols=207 Identities=14% Similarity=0.110 Sum_probs=143.0
Q ss_pred CHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhh----cCCeEE
Q psy14428 208 DAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTD----SRLNVG 283 (583)
Q Consensus 208 ~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~----~G~~~~ 283 (583)
...|.+++++..+. +.-++ ++.|..|+.. ++. ++.+||.|++....|......++. .|+++.
T Consensus 57 ~~~lE~~la~LE~~--------~~a~~--~sSGmaAi~~---~l~-~l~~gd~iv~~~~~yg~t~~~~~~~l~~~gi~~~ 122 (393)
T d1n8pa_ 57 RENLERAVAALENA--------QYGLA--FSSGSATTAT---ILQ-SLPQGSHAVSIGDVYGGTHRYFTKVANAHGVETS 122 (393)
T ss_dssp HHHHHHHHHHHTTC--------SEEEE--ESCHHHHHHH---HHH-TSCSSCEEEEESSCCHHHHHHHHHTSTTTCSCCE
T ss_pred HHHHHHHHHHHhCC--------ceEEE--ecCchhHHHh---hhh-cccCCCeeeeeeeecccchhhhhhhhhcccceeE
Confidence 35667777776543 23344 5666777754 343 445699999999999988776654 466555
Q ss_pred EEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHH-HHhcCeEEEEeccCCCCCCCCCCC
Q psy14428 284 AYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVV-VKQRHLYPFFDMAYLGLTSGDFDK 362 (583)
Q Consensus 284 ~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~-a~~~~i~iI~De~Y~~l~~~~~~~ 362 (583)
.++. +.+.+++.+ .++++++++-+|.|||..+.+.+.+.++++- +.++++++|+|..+..-..-
T Consensus 123 ~~~~--------~~~~~~~~i---~~~t~lv~~EspsNP~l~v~Di~~ia~~a~~~~~~~g~~lvVDnT~atP~~~---- 187 (393)
T d1n8pa_ 123 FTND--------LLNDLPQLI---KENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPYIS---- 187 (393)
T ss_dssp EESS--------HHHHHHHHS---CSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTTHHHHC----
T ss_pred Eeec--------chHHHHHHh---hhhcceeEecCcchhhhhccchhhhhhhhhhhcccCCceEEEecCccCcccC----
Confidence 4421 345666655 7899999999999999999986666554432 22789999999998422111
Q ss_pred chHHHHHHHHhcCcEEEEecCcccccc-cCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhCC--
Q psy14428 363 DAFSLRYFAKEVGQLCLAQSFSKNMGL-YGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSD-- 439 (583)
Q Consensus 363 ~~~~~~~~~~~~~~vi~i~S~SK~~~l-~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~~-- 439 (583)
+. -..+--|++.|.+|.++- ..+-.|.++. .+ +++.++++..........++...+.+.+-+++
T Consensus 188 -----~P--l~~GADiVvhS~TKyi~GhsDv~~G~v~~--~~----~~~~~~l~~~~~~~G~~~~p~~a~ll~rgl~Tl~ 254 (393)
T d1n8pa_ 188 -----NP--LNFGADIVVHSATKYINGHSDVVLGVLAT--NN----KPLYERLQFLQNAIGAIPSPFDAWLTHRGLKTLH 254 (393)
T ss_dssp -----CG--GGGTCSEEEEETTTTTTCSSCCCCEEEEE--SC----HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTHH
T ss_pred -----Cc--hhhCCCEEEEccccccCCCCccccceeee--cc----hhHHHHHHHHHhhcCCCCChHHHHHHHhCCcchh
Confidence 11 123456899999999954 3456666666 43 47888888888888888999999999999986
Q ss_pred hhhhhhhhhHHHHHHHH
Q psy14428 440 PKLKAQCDETERIMSQL 456 (583)
Q Consensus 440 ~~~~~~~~~~~~~~~~l 456 (583)
-.++++.++...+.+.+
T Consensus 255 lR~~~~~~nA~~lA~~L 271 (393)
T d1n8pa_ 255 LRVRQAALSANKIAEFL 271 (393)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 35666666666665555
|
| >d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase homolog WlaK (PglE, Cj1121c) species: Campylobacter jejuni [TaxId: 197]
Probab=98.93 E-value=1.3e-08 Score=103.49 Aligned_cols=173 Identities=12% Similarity=-0.047 Sum_probs=117.1
Q ss_pred CHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEec
Q psy14428 208 DAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRY 287 (583)
Q Consensus 208 ~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~ 287 (583)
...|.+.++++++.+ ..+. ++.|+.|+.++ +...-.++||+|++|+-+|+.....+..+|++++.+++
T Consensus 23 ~~~fE~~~~~~~~~~--------~~~~--~~SgT~Al~la--l~~l~~~~gdeVi~p~~t~~a~~~~~~~~g~~pv~~Di 90 (374)
T d1o69a_ 23 VNRFEQSVKDYSKSE--------NALA--LNSATAALHLA--LRVAGVKQDDIVLASSFTFIASVAPICYLKAKPVFIDC 90 (374)
T ss_dssp HHHHHHHHHHHHCCS--------EEEE--ESCHHHHHHHH--HHHTTCCTTCEEEEESSSCGGGTHHHHHTTCEEEEECB
T ss_pred HHHHHHHHHHHHCcC--------eEEE--eCCHHHHHHHH--HHHcCCCCcCEEEeCCcchHhhHHHHhhccceeEeccc
Confidence 689999999999764 3555 88899999986 32222566999999999999999999999999999998
Q ss_pred ccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHH
Q psy14428 288 FDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSL 367 (583)
Q Consensus 288 ~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~ 367 (583)
|+.....+.+.. +......++++++++.+. .|... ++.+|.++|++++++||||.+......-. .. .+
T Consensus 91 -~~~~~~~~~~~~-~~~~~~~~~~~aii~~~~---~G~~~---d~~~i~~~~~~~~i~vIED~a~a~g~~~~---~~-~~ 158 (374)
T d1o69a_ 91 -DETYNIDVDLLK-LAIKECEKKPKALILTHL---YGNAA---KMDEIVEICKENDIVLIEDAAEALGSFYK---NK-AL 158 (374)
T ss_dssp -CTTSSBCHHHHH-HHHHHCSSCCCEEEEECG---GGCCC---CHHHHHHHHHHTTCEEEEECTTCTTCEET---TE-ET
T ss_pred -cccccccccccc-ccchhccccccccccccc---ccchh---hhHHHHHHhhccCcchhhhhhhhhcceEC---Ce-ec
Confidence 554333344333 322333566666665333 34444 36677888999999999999986644221 00 11
Q ss_pred HHHHHhcCcEEEEecC--cccccccCccceEEEEEcCCchhHHHHHHHHHHH
Q psy14428 368 RYFAKEVGQLCLAQSF--SKNMGLYGERVGTFSVLTPTSDETERIMSQLKIL 417 (583)
Q Consensus 368 ~~~~~~~~~vi~i~S~--SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~ 417 (583)
-+ .. .+.+.|| +|.++ .| --|.++. .+ +++.++++..
T Consensus 159 G~---~g--d~~~fSf~~~K~l~-tg-eGG~i~t--nn----~~~~~~~~~~ 197 (374)
T d1o69a_ 159 GT---FG--EFGVYSYNGNKIIT-TS-GGGMLIG--KN----KEKIEKARFY 197 (374)
T ss_dssp TS---SS--SEEEEECCTTSSSC-CS-SCEEEEE--SC----HHHHHHHHHH
T ss_pred CC---CC--ceEEEeccCccccc-cc-cceeehh--hh----HHHHHhhccc
Confidence 11 12 3444555 68886 33 3478887 55 4788877765
|
| >d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Spore coat polysaccharide biosynthesis protein C species: Helicobacter pylori [TaxId: 210]
Probab=98.87 E-value=1.4e-08 Score=103.28 Aligned_cols=197 Identities=11% Similarity=0.026 Sum_probs=131.7
Q ss_pred CCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhC-CC-
Q psy14428 180 PYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFY-PG- 257 (583)
Q Consensus 180 p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~-~~- 257 (583)
|...+.-.+++.++++.+ .|+...-...|.+.++++++.+ ..+. +++|+.|+.++ +..+. .+
T Consensus 8 p~~~~~~~~~v~~~l~~~---~~~~G~~v~~fE~~~~~~~g~k--------~ai~--~~Sgt~Al~~a---l~al~~~~~ 71 (371)
T d2fnua1 8 PCLDKEDKKAVLEVLNSK---QLTQGKRSLLFEEALCEFLGVK--------HALV--FNSATSALLTL---YRNFSEFSA 71 (371)
T ss_dssp CCCCHHHHHHHHHHHTSS---CCSSSHHHHHHHHHHHHHHTCS--------EEEE--ESCHHHHHHHH---HHHSSCCCT
T ss_pred CCCCHHHHHHHHHHHcCC---CccCCHHHHHHHHHHHHHHCcC--------eEEE--EecHHHHHHHH---HHHhcccCC
Confidence 334455566777777543 3443334689999999999754 4556 88888999985 33332 22
Q ss_pred -CCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHH
Q psy14428 258 -VKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLA 336 (583)
Q Consensus 258 -gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~ 336 (583)
+|+|++|.-+|......+...|++++.+++ |+++ .++.+.+++.+ ++++++++..+ .-|.... +.+|.
T Consensus 72 ~~~eVi~p~~t~~a~~~ai~~~G~~pv~vDi-~~~~-~~~~~~~~~~~---~~~t~avi~vh---~~G~~~~---~~~i~ 140 (371)
T d2fnua1 72 DRNEIITTPISFVATANMLLESGYTPVFAGI-KNDG-NIDELALEKLI---NERTKAIVSVD---YAGKSVE---VESVQ 140 (371)
T ss_dssp TSCEEEECSSSCTHHHHHHHHTTCEEEECCB-CTTS-SBCGGGSGGGC---CTTEEEEEEEC---GGGCCCC---HHHHH
T ss_pred CCCeeecccccccccceeeeccCcccccccc-cccc-cccchhhhhhc---cchhhcccccc---ccccccc---ccccc
Confidence 458999999999999999999999999998 6654 45556655444 77888887653 4565555 45678
Q ss_pred HHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHH
Q psy14428 337 VVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKI 416 (583)
Q Consensus 337 ~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~ 416 (583)
++|++++++||||.+......-.. .. . ...++-.++....+|.++ +|- -|.++. .+ +++.++++.
T Consensus 141 ~~~~~~~i~lIEDaaqa~Ga~~~~--~~--~---G~~g~~~~~Sf~~~K~l~-~g~-GG~i~t--~~----~~~~~~~~~ 205 (371)
T d2fnua1 141 KLCKKHSLSFLSDSSHALGSEYQN--KK--V---GGFALASVFSFHAIKPIT-TAE-GGAVVT--ND----SELHEKMKL 205 (371)
T ss_dssp HHHHHHTCEEEEECTTCTTCEETT--EE--T---TSSSSEEEEECCTTSSSC-CSS-CEEEEE--SC----HHHHHHHHH
T ss_pred ccccccchhhccchhhccCceecc--cc--C---Cccccccccccccccccc-ccc-ceEEEe--ec----hhhhhhccc
Confidence 889999999999999876543210 00 0 011222333334488886 443 688887 65 467777776
Q ss_pred HH
Q psy14428 417 LI 418 (583)
Q Consensus 417 ~~ 418 (583)
..
T Consensus 206 ~~ 207 (371)
T d2fnua1 206 FR 207 (371)
T ss_dssp HT
T ss_pred cc
Confidence 53
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Probab=98.77 E-value=1e-07 Score=99.76 Aligned_cols=143 Identities=13% Similarity=0.106 Sum_probs=106.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHH------hCCCCCEEEEcCCCChhhH
Q psy14428 199 DHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLER------FYPGVKTVYFPTPTWNGHV 272 (583)
Q Consensus 199 ~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~------~~~~gd~Vlv~~P~y~~~~ 272 (583)
...|...+...+|+++++++++. +.++. +++|++|..++...+.. ....+..+......+....
T Consensus 67 d~~Y~~~~~~~~le~~~a~l~G~--------~~~~~--~~sGt~A~~~a~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~ 136 (467)
T d2v1pa1 67 DEAFSGSRSYYALAESVKNIFGY--------QYTIP--THQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQ 136 (467)
T ss_dssp CCCSSSCHHHHHHHHHHHHHTCC--------SEEEE--ECSSTTTHHHHHHHHHHHHHHHHCCCTTTCEEEESSCCHHHH
T ss_pred chhhcCCchHHHHHHHHHHHHCC--------CEEEE--CCCCHHHHHHHHHHHhhccceEecCCCCcEEEEecccccccH
Confidence 34688888889999999999864 34566 88888888876333321 1122345666666777777
Q ss_pred HHHhhcCCeEEEEecccC---------CCCCCChhhHHHHHHcCC-CCcEEEEeCCCCCCC-CCCCCHHHHHHHHHHHHh
Q psy14428 273 RFCTDSRLNVGAYRYFDN---------KTNGLDFAGMMEDIKAMP-ERSILFLQTSSHNPT-GVDLSEDQWRQLAVVVKQ 341 (583)
Q Consensus 273 ~~~~~~G~~~~~v~~~d~---------~~~g~d~~~l~~~l~~~~-~~~~~i~i~~p~NPT-G~~~s~~~~~~l~~~a~~ 341 (583)
..+...|..++.++. +. ....+|++.+++.+.... +.+.++++.+.+|.. |.+++.+.+++|.++|++
T Consensus 137 ~~~~~~G~~~~~~~~-~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~~ 215 (467)
T d2v1pa1 137 GHSQINGCTVRNVYI-KEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKK 215 (467)
T ss_dssp HHHHHTTCEEEECBC-TTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHH
T ss_pred HHHHHcCCeeeeccc-ccccccccccccccCCCHHHHHHHHhhcCccccceeeecceeeccccccCCHHHHHHHHHHHHH
Confidence 888889999988876 32 124678999999886543 345666677777755 678899999999999999
Q ss_pred cCeEEEEeccC
Q psy14428 342 RHLYPFFDMAY 352 (583)
Q Consensus 342 ~~i~iI~De~Y 352 (583)
||+++++|++.
T Consensus 216 ~g~~l~~D~a~ 226 (467)
T d2v1pa1 216 YDIPVVMDSAR 226 (467)
T ss_dssp TTCCEEEECTT
T ss_pred cCCEEEEechh
Confidence 99999999995
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=98.77 E-value=3.3e-07 Score=94.04 Aligned_cols=191 Identities=11% Similarity=0.062 Sum_probs=131.8
Q ss_pred CChHHHHHHHHHhccCCC--CCCCCC------CCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHH-
Q psy14428 182 VLPSVKEAERRIYEKNLD--HEYANI------GGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLE- 252 (583)
Q Consensus 182 ~~~~v~~a~~~~~~~~~~--~~Y~~~------~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~- 252 (583)
+++.+.+++.+...+... ..-... .-+++.|+.+|++++.. +++.|++ |+++++++.++...+.
T Consensus 34 ~p~~v~~~~~~~~~~~~~n~~s~~~~~~~~~~~~~e~aR~~ia~llga~-----~~~~i~~--~~~tt~~~n~~~~~~~~ 106 (408)
T d1t3ia_ 34 KPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINAR-----SPREIVY--TRNATEAINLVAYSWGM 106 (408)
T ss_dssp CCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCS-----CGGGEEE--ESSHHHHHHHHHHHTHH
T ss_pred CCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCC-----CcccEEe--ecchHHHHHHHHhhccc
Confidence 567888887776654210 000001 11236788888887531 2577888 8999999888643322
Q ss_pred HhCCCCCEEEEcCCCChhhHH----HHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCC
Q psy14428 253 RFYPGVKTVYFPTPTWNGHVR----FCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLS 328 (583)
Q Consensus 253 ~~~~~gd~Vlv~~P~y~~~~~----~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s 328 (583)
...++||+|++.+-.|+.... ..+..|.++..+|. +. +...+.+.+++.+ .++++++.++.-+|-||..++
T Consensus 107 ~~~~~g~~il~s~~e~~s~~~~~~~~~~~~g~~v~~~~~-~~-~~~~~~~~l~~~~---~~~t~lv~i~~~~~~tG~~~p 181 (408)
T d1t3ia_ 107 NNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQL-DE-QESFDLEHFKTLL---SEKTKLVTVVHISNTLGCVNP 181 (408)
T ss_dssp HHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECB-CT-TSSBCHHHHHHHC---CTTEEEEEEESBCTTTCBBCC
T ss_pred cccCCCCEEEeecccchhhhhhhhhhhhccCceEeeeec-cc-cccccHHHhhhcc---CCCceEEEEecccccccccCc
Confidence 234569999998888776543 44556999999987 33 3567888887766 789999999999999999999
Q ss_pred HHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEE
Q psy14428 329 EDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSV 399 (583)
Q Consensus 329 ~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~ 399 (583)
.+ +|.++|+++|++++.|-+..--..+ ..+.. .+--+++.|.-|.+|-+| +|+++.
T Consensus 182 ~~---~i~~~~~~~g~~~ivDa~q~~g~~~------id~~~----~~~D~~~~s~hK~~gp~G--~g~l~v 237 (408)
T d1t3ia_ 182 AE---EIAQLAHQAGAKVLVDACQSAPHYP------LDVQL----IDCDWLVASGHKMCAPTG--IGFLYG 237 (408)
T ss_dssp HH---HHHHHHHHTTCEEEEECTTTTTTSC------CCHHH----HTCSEEEEEGGGTTSCTT--CEEEEE
T ss_pred HH---HHhhhhhccCceeeeccceeccccc------ccccc----cCCceEEeccccccCCCC--cccccc
Confidence 65 5577899999999999876432221 11222 234578999999876444 799999
|
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Probab=98.72 E-value=8.4e-07 Score=91.48 Aligned_cols=263 Identities=14% Similarity=0.067 Sum_probs=159.8
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
.+...+|+..|.+....|. -.|.+.+++.+.++.. .. +.. ...+...+++.+....+ ..+.+.. +++|
T Consensus 50 ~G~~ylD~~~~~~~~~lGh--~hp~i~~ai~~~~~~~-~~-~~~---~~~~~~~la~~~~~~~~---~~~~v~f--~~sG 117 (427)
T d2gsaa_ 50 DGNRYIDYVGTWGPAICGH--AHPEVIEALKVAMEKG-TS-FGA---PCALENVLAEMVNDAVP---SIEMVRF--VNSG 117 (427)
T ss_dssp TSCEEEESSGGGTTTTTCB--TCHHHHHHHHHHHTTC-SC-CSS---CCHHHHHHHHHHHHHST---TCSEEEE--ESSH
T ss_pred CCCEEEEechhHHHHhccC--CcHHHHHHHHHHHHhc-Cc-ccc---chhHHHHHHHHHHhhCC---ccccccc--cCCc
Confidence 4667889988877666665 3478888888777542 11 111 12345556666654321 2367888 9999
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHh--------hcCC------------eEEEEecccCCCCCCChhhH
Q psy14428 241 SGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCT--------DSRL------------NVGAYRYFDNKTNGLDFAGM 300 (583)
Q Consensus 241 ~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~--------~~G~------------~~~~v~~~d~~~~g~d~~~l 300 (583)
++|.+.+..+.+.... ...|+..+-+|........ ..+. +...++. -|++.+
T Consensus 118 seA~e~Alk~ar~~t~-r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-------~~~~~l 189 (427)
T d2gsaa_ 118 TEACMAVLRLMRAYTG-RDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPY-------NDLEAV 189 (427)
T ss_dssp HHHHHHHHHHHHHHHC-CCEEEEETTCCCCSCGGGCSSCCHHHHHTTCCSCSSSCHHHHTTEEEECT-------TCHHHH
T ss_pred HHHHHHHHHHHHHhcC-CCeEEEEecccccCcceeeeecCCcccccCCCCCCCCcccCccceeccCc-------chHHHH
Confidence 9999998766655544 5778888777765321111 1111 1222222 278889
Q ss_pred HHHHHcCCCCcEEEEeCCCCCC-CC-CCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEE
Q psy14428 301 MEDIKAMPERSILFLQTSSHNP-TG-VDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLC 378 (583)
Q Consensus 301 ~~~l~~~~~~~~~i~i~~p~NP-TG-~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi 378 (583)
++.+++...+...+++ -|-.= .| ...+++-+++|.++|+++|+++|.||+...|..+. ......+ +-.+.++
T Consensus 190 e~~~~~~~~~iaavi~-Epi~g~~G~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~r~g~----~~~~~~~-gi~PDi~ 263 (427)
T d2gsaa_ 190 KALFAENPGEIAGVIL-EPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGFRIAY----GGVQEKF-GVTPDLT 263 (427)
T ss_dssp HHHHTTSTTTEEEEEE-CSSBCSSSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBTTTBT----TCHHHHT-TCCCSEE
T ss_pred HHHHHhCCCCeEEEEE-cCCcCCCCCccCCHHHHHHHHHHHHHhceeeeeccccccceecc----cchHHhc-CCCHHHH
Confidence 8888665445444544 34222 24 35677889999999999999999999999885432 2222222 3334454
Q ss_pred EEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhc---cccCCChHHHHHHHHH---hCChhhhhhhhhHH-H
Q psy14428 379 LAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRG---FYSNPPIHGARIVTEI---LSDPKLKAQCDETE-R 451 (583)
Q Consensus 379 ~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~---~~~~~s~~~q~~~~~~---l~~~~~~~~~~~~~-~ 451 (583)
+ ++|.+| .|+-+|.+++ . +++++.+...... .+++.++++..++.+. ++++.+.++..+.- +
T Consensus 264 ~---~gK~lg-gG~p~~a~~~--~-----~~i~~~~~~~~~~~~~~T~~gnpla~AAala~Le~i~~~~l~~~~~~~g~~ 332 (427)
T d2gsaa_ 264 T---LGKIIG-GGLPVGAYGG--K-----REIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKR 332 (427)
T ss_dssp E---ECGGGG-TTSCCEEEEE--C-----HHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHH
T ss_pred h---hhhccC-CCcceeeeee--h-----HHHHHHhcccCCCcCCCCCCCCchhhHHHHHhhHHhhhhhHHhhhhHHHHH
Confidence 4 589998 7999999988 6 5777766542211 2456677777766654 44544444444433 3
Q ss_pred HHHHHHHHH
Q psy14428 452 IMSQLKILI 460 (583)
Q Consensus 452 ~~~~l~~~~ 460 (583)
+.+.++++.
T Consensus 333 l~~~L~~l~ 341 (427)
T d2gsaa_ 333 LSDGLLAIA 341 (427)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Probab=98.59 E-value=1e-07 Score=97.48 Aligned_cols=192 Identities=9% Similarity=-0.043 Sum_probs=121.3
Q ss_pred CChHHHHHHHHHhccC-CCCCCCC------CCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHH---H
Q psy14428 182 VLPSVKEAERRIYEKN-LDHEYAN------IGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAF---L 251 (583)
Q Consensus 182 ~~~~v~~a~~~~~~~~-~~~~Y~~------~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~---l 251 (583)
++..+.+++.+.+.+. ......+ ..-..+.|+.+|++++ +++++|++ |+++++++..+... +
T Consensus 39 ~p~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~e~~R~~iA~llg------a~~~ei~~--~~~~T~~~~~~~~~~~~~ 110 (404)
T d1qz9a_ 39 RPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIG------ARDGEVVV--TDTTSINLFKVLSAALRV 110 (404)
T ss_dssp CBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTT------CCTTSEEE--CSCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcccCcccccchhHHHHHHHHHHHHHHHhC------CCCCcEEE--ecCchHHHHHHhhhhhhh
Confidence 4577788777766431 0111110 0112367777777764 67899999 99999998765321 1
Q ss_pred HHhCCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHH
Q psy14428 252 ERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQ 331 (583)
Q Consensus 252 ~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~ 331 (583)
.....+++.|++.+-.+..........+.++..++. +. +...+++.+++.+ .+++++++++..+|.||..++
T Consensus 111 ~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~i---~~~T~lV~i~~v~~~tG~~~p--- 182 (404)
T d1qz9a_ 111 QATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGY-TL-RLVDSPEELPQAI---DQDTAVVMLTHVNYKTGYMHD--- 182 (404)
T ss_dssp HHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSC-EE-EEESSGGGHHHHC---STTEEEEEEESBCTTTCBBCC---
T ss_pred hcccCCCcEEEEeccccchHHHHHHhhhheeeeece-ec-cccccchhHHHhc---CCCceEEEEecccccccceec---
Confidence 222345788887776655544443333333333322 11 1234677777766 789999999999999999998
Q ss_pred HHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEE
Q psy14428 332 WRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSV 399 (583)
Q Consensus 332 ~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~ 399 (583)
+++|+++|+++++.+++|-+..--...- .+.. .+..++..|..|.+..+.--+|+++.
T Consensus 183 v~~i~~~~~~~~~~~~vD~~q~~g~~~~------~~~~----~~~d~~~~s~~K~~~~~~g~~g~~~~ 240 (404)
T d1qz9a_ 183 MQALTALSHECGALAIWDLAHSAGAVPV------DLHQ----AGADYAIGCTYKYLNGGPGSQAFVWV 240 (404)
T ss_dssp HHHHHHHHHHHTCEEEEECTTTTTTSCC------CHHH----HTCSEEEECSSSTTCCCTTCCCEEEE
T ss_pred HHHHhccccccccceeEEeecccccccc------cccc----ccceEEEEechhhcccCCceEEEEEe
Confidence 4556888999999999999875543321 1222 24456778888877544444677777
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Probab=98.58 E-value=1.3e-06 Score=88.84 Aligned_cols=242 Identities=14% Similarity=0.058 Sum_probs=150.7
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
.+...+|+..|.+...+|. -.|.+.+++.+.++... +.+..-..+.+..+++.+.... .-.-+++.. +++|
T Consensus 35 dG~~ylD~~~g~~~~~lGh--~hp~v~~a~~~~~~~~~---~~~~~~~~~~~~~la~~l~~~~--~~~~~~v~f--~~sG 105 (387)
T d1vefa1 35 EGNEYIDCVGGYGVANLGH--GNPEVVEAVKRQAETLM---AMPQTLPTPMRGEFYRTLTAIL--PPELNRVFP--VNSG 105 (387)
T ss_dssp TSCEEEESSHHHHTCTTCB--TCHHHHHHHHHHHHHCC---CCCTTSCCHHHHHHHHHHHHTS--CTTEEEEEE--ESSH
T ss_pred CCCEEEEcchhHHhhhhcC--CcHHHHHHHHHHHHhhc---ccccccCCchHHHHHHHhhhhc--cccceeecc--ccCc
Confidence 4556788887777666664 34677777777665421 2221112345556665554432 112357888 9999
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhh-cC------------CeEEEEecccCCCCCCChhhHHHHHHcC
Q psy14428 241 SGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTD-SR------------LNVGAYRYFDNKTNGLDFAGMMEDIKAM 307 (583)
Q Consensus 241 ~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~-~G------------~~~~~v~~~d~~~~g~d~~~l~~~l~~~ 307 (583)
++|.+.+..+.+.... ...|+...-+|......... .| ..+..+|.. |.+.+++.+
T Consensus 106 seA~e~Aik~Ar~~t~-r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~p~~~~~~~~p~~-------d~~~l~~~~--- 174 (387)
T d1vefa1 106 TEANEAALKFARAHTG-RKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYN-------DVEALKRAV--- 174 (387)
T ss_dssp HHHHHHHHHHHHHHHS-CCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECTT-------CHHHHHHHC---
T ss_pred hHHHHHHHHHHHhhcc-cceecccccCCCCCccceEeccCCccccCCCCCCCCCceEeCCC-------CHHHHHHhc---
Confidence 9999998777666655 57888888888654322222 11 123444441 677777766
Q ss_pred CCCcEEEEeCCC-CCCCCC-CCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcc
Q psy14428 308 PERSILFLQTSS-HNPTGV-DLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSK 385 (583)
Q Consensus 308 ~~~~~~i~i~~p-~NPTG~-~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK 385 (583)
.+....+++ .| +.-.|. ..+++-+++|.++|+++|+++|.||+...|..-+. ......+ +-.+.++ +++|
T Consensus 175 ~~~iAavi~-EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~---~~~~~~~-~v~PDi~---~~gK 246 (387)
T d1vefa1 175 DEETAAVIL-EPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGK---RFAFEHF-GIVPDIL---TLAK 246 (387)
T ss_dssp CTTEEEEEE-CSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSTHHHH-TCCCSEE---EECG
T ss_pred CCCeEEEEE-ECCCCCCCCccCCHHHHHHHHHHHHHcCceEEecccccccCccCC---CcccccC-CcCCcee---eecc
Confidence 445555554 33 223454 47789999999999999999999999999844331 1122232 3333444 3589
Q ss_pred cccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhC
Q psy14428 386 NMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILS 438 (583)
Q Consensus 386 ~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~ 438 (583)
.++ .|+=+|.+++ . +++++.+.......+++.++++..++.+.++
T Consensus 247 ~l~-gG~~~~~~~~--~-----~~~~~~~~~~~~g~T~~gnPla~aaa~a~L~ 291 (387)
T d1vefa1 247 ALG-GGVPLGVAVM--R-----EEVARSMPKGGHGTTFGGNPLAMAAGVAAIR 291 (387)
T ss_dssp GGG-TTSSCEEEEE--E-----HHHHHTSCTTSSCCSSTTCHHHHHHHHHHHH
T ss_pred cCC-CCcccccccc--c-----eeeeeccccCCccccCCCCcchhhhcccchh
Confidence 998 7888888888 4 4566655444333455667887777776654
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Probab=98.55 E-value=3.1e-07 Score=95.33 Aligned_cols=262 Identities=13% Similarity=-0.069 Sum_probs=165.5
Q ss_pred CChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCC---CeEEEecCCchhHHHHHHHHHHHh----
Q psy14428 182 VLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDN---RLAIVQGISGSGSLRVGTAFLERF---- 254 (583)
Q Consensus 182 ~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~---~I~i~~t~G~~~al~l~~~~l~~~---- 254 (583)
..+.+.+.+.+.+..+ ...+.......++.+.+.+++.+-.|.+-..+ -=.+ |+||++|+.++....+.-
T Consensus 66 ~~~~~~~l~~~~~~~N-~~~~~~~P~~~~lE~~~v~~la~L~~~p~~~~~~~~G~~--t~GgSeA~~~a~~aar~~~~~~ 142 (450)
T d1pmma_ 66 DDENVHKLMDLSINKN-WIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTN--TIGSSEACMLGGMAMKWRWRKR 142 (450)
T ss_dssp CCHHHHHHHHHTTTCB-TTCTTTSHHHHHHHHHHHHHHHHHTTCCCCTTSCCSEEE--ESSHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcC-CCCcccCccHHHHHHHHHHHHHHHhCCCccccCCCcCee--eCchHHHHHHHHHHHHHHHHHH
Confidence 4467777777666543 22333344456777877777776655432211 1356 999999998874332211
Q ss_pred -----CCCCCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCH
Q psy14428 255 -----YPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSE 329 (583)
Q Consensus 255 -----~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~ 329 (583)
.+....+++...........++..|+++..||. +++++.+|++.+++.+ .+++++++.+.++|.||.+=+.
T Consensus 143 ~~~~g~~~~~~~~~~~~~H~s~~Kaa~~~gi~~~~v~~-~~~~~~~d~~~L~~~i---~~~t~~Vv~t~gtt~tG~~dpv 218 (450)
T d1pmma_ 143 MEAAGKPTDKPNLVCGPVQICWHKFARYWDVELREIPM-RPGQLFMDPKRMIEAC---DENTIGVVPTFGVTYTGNYEFP 218 (450)
T ss_dssp HHHHTCCCSCCEEEESSCCHHHHHHHHHTTCEEEECCC-BTTBCSCCHHHHHHHC---CTTEEEEECBBSCTTTCBBCCH
T ss_pred hhhcCCCCCCceEEecccHHHHHHHHHHcCCCceEeee-cCCCCcCcHHHHHHHh---hhCceEEEeeeeeccCCCcccc
Confidence 122335677777788888899999999999998 6666889999999887 6788999999999999999999
Q ss_pred HHHHHHHHH---HHhcCeEEEEeccCCCCCC--CCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCc
Q psy14428 330 DQWRQLAVV---VKQRHLYPFFDMAYLGLTS--GDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTS 404 (583)
Q Consensus 330 ~~~~~l~~~---a~~~~i~iI~De~Y~~l~~--~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~ 404 (583)
+++.+|++. |+++++++.+|-+|+.+.. ... .... . .....-.-+..|.-|.++ .-.-+||++. .++
T Consensus 219 ~~i~~i~~~~~~a~~~~i~lHVDAA~gG~~~p~~~~-~~~~-~---~~~~~aDSi~~s~HK~~~-~p~g~g~l~~--r~~ 290 (450)
T d1pmma_ 219 QPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAP-DIVW-D---FRLPRVKSISASGHKFGL-APLGCGWVIW--RDE 290 (450)
T ss_dssp HHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCT-TCCC-S---TTSTTEEEEEEETTTTTC-CCSSCEEEEE--SSG
T ss_pred chhhHHHHHHHHHhccCcEEEeehhhccceeeeech-hhhh-h---hcccceeEeecChhhccC-CCCCeeEEEe--cCh
Confidence 877766654 6789999999999976542 110 0000 0 011122356668899765 5566899999 653
Q ss_pred hhHHHHHHHHHHH-------HhccccC-----CChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHHHHh
Q psy14428 405 DETERIMSQLKIL-------IRGFYSN-----PPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIR 461 (583)
Q Consensus 405 ~~~~~li~~l~~~-------~~~~~~~-----~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~r 461 (583)
. .+...+... ....... ...+.+++....+....+.+..++.....+.+.+.++
T Consensus 291 ~---~~~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~~~~~~l~~~G~~G~~~~~~~~~~la~~l~~~L~ 356 (450)
T d1pmma_ 291 E---ALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIA 356 (450)
T ss_dssp G---GSCGGGCEEEEETTEEEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred h---hhhhhcccccCcCCCCcCCCcccCccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 111111110 0001111 1223455555666666677777666666665555554
|
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.48 E-value=2.4e-06 Score=87.30 Aligned_cols=241 Identities=12% Similarity=0.074 Sum_probs=144.3
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCC-CCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCC
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNL-DHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGIS 239 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~-~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G 239 (583)
.+...+|+..|.+...+|. -.|.+.+++.+.++... ...+....-...+.+.+++.. ..+++.. ++.
T Consensus 39 dG~~ylD~~~g~~~~~lGh--~~p~i~~Av~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~v~~--~~s 106 (404)
T d2byla1 39 EGRKYFDFLSSISAVNQGH--CHPKIVNALKSQVDKLTLTSRAFYNNVLGEYEEYITKLF--------NYHKVLP--MNT 106 (404)
T ss_dssp TCCEEEESSHHHHTCTTCB--TCHHHHHHHHHHHTTCCCCCTTEEESSHHHHHHHHHHHH--------TCSEEEE--ESS
T ss_pred CCCEEEEecCCHHHHhhcC--CCHHHHHHHHHHHhhCCCcccccccchHHHHHHhhhhcc--------ccccccc--ccC
Confidence 4567899998888766665 34778888887775421 111212222234445454443 2367888 889
Q ss_pred chhHHHHHHHHHHHhC-------CCCCEEEEcCCCChhhHH-HHhhc------------CCeEEEEecccCCCCCCChhh
Q psy14428 240 GSGSLRVGTAFLERFY-------PGVKTVYFPTPTWNGHVR-FCTDS------------RLNVGAYRYFDNKTNGLDFAG 299 (583)
Q Consensus 240 ~~~al~l~~~~l~~~~-------~~gd~Vlv~~P~y~~~~~-~~~~~------------G~~~~~v~~~d~~~~g~d~~~ 299 (583)
|++|.+.+..+.+... .....++...-+|..... ..... -..+..+|. -|++.
T Consensus 107 GseA~e~Aik~ar~~~~~~~~~~~~~~~i~~~~~~~hg~t~~~~~~~~~~~~~~~~~p~~~~~~~~p~-------~d~~~ 179 (404)
T d2byla1 107 GVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPY-------NDLPA 179 (404)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCCSHHHHTTCCCHHHHTTSCSCCTTEEEECT-------TCHHH
T ss_pred ccccchhHHHHHHHHhhhccccccccccccccCCCccccccceeccCCCcccccCCCCCCCCeeEecc-------cCHHH
Confidence 9999998765554321 113456655555543211 11111 112333443 17788
Q ss_pred HHHHHHcCCCCcEEEEeCCC-CCCCC-CCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcE
Q psy14428 300 MMEDIKAMPERSILFLQTSS-HNPTG-VDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQL 377 (583)
Q Consensus 300 l~~~l~~~~~~~~~i~i~~p-~NPTG-~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~v 377 (583)
+++.++ .++..++++ -| +.-.| ...+++-+++|.++|+++|+++|.||+...|.-.+. ......+ +-.+.+
T Consensus 180 l~~~l~--~~~iAavii-EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~---~~a~~~~-gv~PDi 252 (404)
T d2byla1 180 LERALQ--DPNVAAFMV-EPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGR---WLAVDYE-NVRPDI 252 (404)
T ss_dssp HHHHHT--STTEEEEEE-CSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSGGGGG-TCCCSE
T ss_pred HHHhcC--CCCeEEEEE-CCccCCCCCccCCHHHHHHHHHHHHhcCeEEEeeccccccccccc---cchhhhc-CCCCCE
Confidence 888884 233444444 44 33345 566788999999999999999999999988844331 1122111 222233
Q ss_pred EEEecCcccccccC-ccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhC
Q psy14428 378 CLAQSFSKNMGLYG-ERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILS 438 (583)
Q Consensus 378 i~i~S~SK~~~l~G-lRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~ 438 (583)
+ +|+|.++ .| +-+|.+++ . +++.+.+.......+++.++++..++.+.|+
T Consensus 253 ~---~~gK~l~-gG~~p~~av~~--~-----~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~ 303 (404)
T d2byla1 253 V---LLGKALS-GGLYPVSAVLC--D-----DDIMLTIKPGEHFSTYGGNPLGCRVAIAALE 303 (404)
T ss_dssp E---EECGGGG-TTSSCCEEEEE--C-----HHHHTTSCTTSSCCSSTTCHHHHHHHHHHHH
T ss_pred E---EECchhh-CCCccceeeee--c-----hhhhhccCCCCCCcCCCcCHHHHHHHHHHHH
Confidence 3 7899998 66 78999999 6 4666666544333455667777777666654
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.41 E-value=1.2e-05 Score=80.86 Aligned_cols=164 Identities=12% Similarity=-0.047 Sum_probs=109.7
Q ss_pred CCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChh--hHHHHhhcCCeEEEEecccCCCCCCChhhHHHHH
Q psy14428 227 FKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNG--HVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDI 304 (583)
Q Consensus 227 ~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~--~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l 304 (583)
.+++.|++ |.|++++++.+..-+..-..+||+|++..-.+.. +....+..|..+..+.. .+.....+.+.+++.+
T Consensus 55 ~~~~~i~~--t~sgT~a~~~~~~~l~~~~~~gd~vlv~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 131 (382)
T d2bkwa1 55 SKSQPFVL--AGSGTLGWDIFASNFILSKAPNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRP-LKIGESVPLELITEKL 131 (382)
T ss_dssp GTCEEEEE--ESCTTHHHHHHHHHHSCTTCSCCEEEEECSSHHHHHHHHHHHHTTCEEEEECC-SSTTSCCCHHHHHHHH
T ss_pred CCCeEEEE--eCcHHHHHHHHHHHHHHhcCCCCceEEEEechhhhhhhhhccccccccccccc-cCCCCccchhHHHHHh
Confidence 45567888 9999999998622221112469999998766433 34455667887776654 3334567788887776
Q ss_pred HcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCc
Q psy14428 305 KAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFS 384 (583)
Q Consensus 305 ~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~S 384 (583)
.. .++++++++..+|.||...+.+++.+++. +..+++++++|.+-.--..+= + .+..+--+++.|--
T Consensus 132 ~~--~~~~~v~~~~~~~~tg~~~~~~~~~~~~~-~~~~~~~~~vDa~qs~g~~pi---d-------~~~~giD~~~~s~~ 198 (382)
T d2bkwa1 132 SQ--NSYGAVTVTHVDTSTAVLSDLKAISQAIK-QTSPETFFVVDAVCSIGCEEF---E-------FDEWGVDFALTASQ 198 (382)
T ss_dssp HH--SCCSEEEEESEETTTTEECCHHHHHHHHH-HHCTTSEEEEECTTTTTTSCC---C-------TTTTTCSEEEEESS
T ss_pred hh--ccchheeeeeccccccccccchhhhhhcc-ccccceeeeeecccccccccc---c-------ccccCeeEEeeccc
Confidence 53 46678888999999999999887755433 445679999999865433220 0 12223457888889
Q ss_pred ccc-cccCccceEEEEEcCCchhHHHHHHHHH
Q psy14428 385 KNM-GLYGERVGTFSVLTPTSDETERIMSQLK 415 (583)
Q Consensus 385 K~~-~l~GlRiG~lv~~~p~~~~~~~li~~l~ 415 (583)
|.+ |-+| +|++++ . +++++++.
T Consensus 199 K~l~gP~G--~g~l~v--s-----~~~~~~~~ 221 (382)
T d2bkwa1 199 KAIGAPAG--LSISLC--S-----SRFMDYAL 221 (382)
T ss_dssp STTCCCSC--EEEEEE--C-----HHHHHHHT
T ss_pred ccCcCCCc--hhhhhc--c-----HHHHhhhh
Confidence 988 6677 599998 5 45655543
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Probab=98.40 E-value=1.7e-06 Score=89.15 Aligned_cols=253 Identities=11% Similarity=-0.017 Sum_probs=144.2
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
.+...+|+..|.+....|. -.|.+.+++.+.++... |.......+-+..+|+.+.+... -..+++.+ +++|
T Consensus 39 dG~~ylD~~~g~~~~~lGh--~~p~v~~ai~~q~~~~~---~~~~~~~~~~~~~la~~L~~~~~--~~~~~v~f--~~sG 109 (431)
T d1zoda1 39 DGRAILDFTSGQMSAVLGH--CHPEIVSVIGEYAGKLD---HLFSEMLSRPVVDLATRLANITP--PGLDRALL--LSTG 109 (431)
T ss_dssp TCCEEEETTHHHHTCTTCB--TCHHHHHHHHHHHHHCC---CCCTTCCCHHHHHHHHHHHHHSC--TTCCEEEE--ESCH
T ss_pred CCCEEEEcccCHHhhhhcC--CCHHHHHHHHHHHhhcc---ccccccccHHHHHHHHHHHHhCC--cccceeee--cccc
Confidence 4567789988887766775 34788888777765421 21111222333445555543211 12468999 9999
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhhcCC------------eEEEEecccCCCC-------CCC---hh
Q psy14428 241 SGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRL------------NVGAYRYFDNKTN-------GLD---FA 298 (583)
Q Consensus 241 ~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~------------~~~~v~~~d~~~~-------g~d---~~ 298 (583)
++|.+.+..+.+.... .+.|+...-+|.......-..+. ....++....... ..+ .+
T Consensus 110 seA~e~Alk~Ar~~t~-r~~i~~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (431)
T d1zoda1 110 AESNEAAIRMAKLVTG-KYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELD 188 (431)
T ss_dssp HHHHHHHHHHHHHHHT-CCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHH
T ss_pred cchHHHHHHHHHHhcC-CcceeecccccccccchhhcccccccccccCCcccCceeeeeecccccccccccchhhhhhHH
Confidence 9999998777666654 57788777777665333222111 1222222000000 001 22
Q ss_pred hHHHHHHcCCCCcEEEEeCCCCCCC-CC-CCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCc
Q psy14428 299 GMMEDIKAMPERSILFLQTSSHNPT-GV-DLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQ 376 (583)
Q Consensus 299 ~l~~~l~~~~~~~~~i~i~~p~NPT-G~-~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~ 376 (583)
.+...+....+...+-++--|-.-. |. ..+++-+++|.++|+++|+++|.||+...|..-+. ......+ +-.+.
T Consensus 189 ~~~~~~~~~~~~~iAavi~EPi~g~~G~~~~~~~yl~~lr~lc~~~gillI~DEV~tG~gRtG~---~~~~~~~-gv~PD 264 (431)
T d1zoda1 189 YAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGT---MFACQRD-GVTPD 264 (431)
T ss_dssp HHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSTHHHH-TCCCS
T ss_pred HHHHHHHHhccccccceeeccccccCCccCCCHHHHHHHHHHHHhcCceEEecccccccccccc---ccccccC-CCCcc
Confidence 2222222223333333333443223 33 46888999999999999999999999998754431 1122222 22334
Q ss_pred EEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHH--hccccCCChHHHHHHHHHhC
Q psy14428 377 LCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILI--RGFYSNPPIHGARIVTEILS 438 (583)
Q Consensus 377 vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~--~~~~~~~s~~~q~~~~~~l~ 438 (583)
++ +++|.++ .|+-+|.+++ . +++++...... ...+++.++++..++.+.++
T Consensus 265 i~---~~gK~l~-gG~p~~av~~--~-----~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~l~ 317 (431)
T d1zoda1 265 IL---TLSKTLG-AGLPLAAIVT--S-----AAIEERAHELGYLFYTTHVSDPLPAAVGLRVLD 317 (431)
T ss_dssp EE---EECHHHH-TTSSCEEEEE--C-----HHHHHHHHHTTCCCCCTTTTCHHHHHHHHHHHH
T ss_pred hh---ccccccc-cccccceeee--e-----ecchhhhhcccccccCCCCCCcchHHHHHHHHH
Confidence 44 4589998 8899999988 5 46666665432 22345667777666655543
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Probab=98.39 E-value=3.5e-06 Score=84.21 Aligned_cols=164 Identities=13% Similarity=-0.018 Sum_probs=107.9
Q ss_pred CCHHHHHHHHHHHhCCCCCCCCCCC--eEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChh--hHHHHhhcCCeE
Q psy14428 207 GDAKFCKLAAQLAYGEDFPAFKDNR--LAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNG--HVRFCTDSRLNV 282 (583)
Q Consensus 207 G~~~Lr~aia~~~~~~~g~~~~~~~--I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~--~~~~~~~~G~~~ 282 (583)
-..+.|+.++++++ +++++ |++ |.|+++++..+ +..+..+++.+++....+.. .....+..+...
T Consensus 34 ~~~~~r~~l~~l~~------~~~~~~~i~~--t~s~T~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (361)
T d1m32a_ 34 VVEQIRQQLTALAT------ASEGYTSVLL--QGSGSYAVEAV---LGSALGPQDKVLIVSNGAYGARMVEMAGLMGIAH 102 (361)
T ss_dssp THHHHHHHHHHHHC------SSSSEEEEEE--ESCHHHHHHHH---HHHSCCTTCCEEEEESSHHHHHHHHHHHHHTCCE
T ss_pred HHHHHHHHHHHHhC------CCCCCEEEEE--CCCHHHHHHHH---HHHhhhhccccceeeehhhhhhHHHHhhhhhccc
Confidence 35788999999886 44555 455 78889999985 44555567777766665322 233344456665
Q ss_pred EEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCC
Q psy14428 283 GAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDK 362 (583)
Q Consensus 283 ~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~ 362 (583)
..+.. +.. ...+. ..+.......++++++.++.-+|-||...+. ++|.++|+++|++++.|-+..--..+-
T Consensus 103 ~~~~~-~~~-~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~tG~~~~i---~~i~~~~~~~g~~~~vDa~qs~G~~~~--- 173 (361)
T d1m32a_ 103 HAYDC-GEV-ARPDV-QAIDAILNADPTISHIAMVHSETTTGMLNPI---DEVGALAHRYGKTYIVDAMSSFGGIPM--- 173 (361)
T ss_dssp EEEEC-CTT-SCCCH-HHHHHHHHHCTTCCEEEEESEETTTTEECCH---HHHHHHHHHHTCEEEEECTTTTTTSCC---
T ss_pred ccccc-ccc-CCccc-hhhHHHHHhccCccceEEEeeecccccchhh---hhhhhhhcccceeeEeecccccCcccc---
Confidence 55544 221 12222 2222222236788999999999999999985 555788999999999999986544321
Q ss_pred chHHHHHHHHhcCcEEEEecCcccccc-cCccceEEEE
Q psy14428 363 DAFSLRYFAKEVGQLCLAQSFSKNMGL-YGERVGTFSV 399 (583)
Q Consensus 363 ~~~~~~~~~~~~~~vi~i~S~SK~~~l-~GlRiG~lv~ 399 (583)
+ .+..+-.+++.|..|.++. +| +|++++
T Consensus 174 d-------~~~~~~D~~~~s~~K~l~gp~G--~g~l~~ 202 (361)
T d1m32a_ 174 D-------IAALHIDYLISSANKCIQGVPG--FAFVIA 202 (361)
T ss_dssp C-------TTTTTCSEEEEESSSTTCCCSS--EEEEEE
T ss_pred c-------ccccccceEEeeecccccCCCC--ceEEEe
Confidence 1 1233567888899998854 46 688887
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Probab=98.32 E-value=3.3e-06 Score=87.77 Aligned_cols=177 Identities=12% Similarity=-0.034 Sum_probs=98.6
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhh-cCCeE
Q psy14428 204 NIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTD-SRLNV 282 (583)
Q Consensus 204 ~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~-~G~~~ 282 (583)
|..=+.++++.+|++++. ++.++ .++|++++... ++..++.+||+|+++.-+.......... .+..+
T Consensus 64 ~~~~i~eae~~~A~~~ga--------~~a~f-~~~Gtt~~n~a---~i~a~~~~gd~Vi~~~~~H~Sv~~~~~~l~~~~~ 131 (462)
T d1c4ka2 64 HEGPAVAAEKHAARVYNA--------DKTYF-VLGGSSNANNT---VTSALVSNGDLVLFDRNNHKSVYNSALAMAGGRP 131 (462)
T ss_dssp TBTHHHHHHHHHHHHTTC--------SEEEE-ESSHHHHHHHH---HHHHHCCTTCEEEEETTCCHHHHHHHTTTTCCEE
T ss_pred CCHHHHHHHHHHHHHhCC--------CeEEE-ECCchHHHHHH---HHHHhcCCCCeEEecccchHHHHHHHHHHhcCCc
Confidence 333357889999999864 33444 15666666554 4556677899999999998776654433 34443
Q ss_pred E--EEecccCCC--C-----CCChhhHHHHHHc------CCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEE
Q psy14428 283 G--AYRYFDNKT--N-----GLDFAGMMEDIKA------MPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPF 347 (583)
Q Consensus 283 ~--~v~~~d~~~--~-----g~d~~~l~~~l~~------~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI 347 (583)
+ ..++ |+.. . .++.+.+.+.+.. ...+++.+++..-+|=.|.+.+ +++|+++|++++++|+
T Consensus 132 ~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~G~~~d---l~~I~~ia~~~g~~l~ 207 (462)
T d1c4ka2 132 VYLQTNR-NPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYN---AHEVVKRIGHLCDYIE 207 (462)
T ss_dssp EEECEEE-CTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEEC---HHHHHHHHGGGBSEEE
T ss_pred eeeeccc-ccccccCCCChHHhhHHHHHhhhhhhcHHhhhccCCceeEEEEeeeeccchhh---HHHHHHHHHHcCCEEE
Confidence 3 3333 3321 0 1222222221111 1233333333344455787776 5667888999999999
Q ss_pred EeccCCCCCCCCCCCchHHHHHHH----HhcCcEEEEecCcccccccCccceEEEE
Q psy14428 348 FDMAYLGLTSGDFDKDAFSLRYFA----KEVGQLCLAQSFSKNMGLYGERVGTFSV 399 (583)
Q Consensus 348 ~De~Y~~l~~~~~~~~~~~~~~~~----~~~~~vi~i~S~SK~~~l~GlRiG~lv~ 399 (583)
+|+++..-..... ....+..... ...+-.+++.|++|+++ +...|.++.
T Consensus 208 vD~A~~~~~~~~~-~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg--~~~~g~ll~ 260 (462)
T d1c4ka2 208 FDSAWVGYEQFIP-MMRNSSPLLIDDLGPEDPGIIVVQSVHKQQA--GFSQTSQIH 260 (462)
T ss_dssp EECTTCCGGGSSG-GGGGGCTTSCCCCCTTSCEEEEEECHHHHSS--CCTTCEEEE
T ss_pred EechhhccccccC-cCCcchhhccccccccCCccEEEEecCcccc--cccceEEEE
Confidence 9999864332110 0011110000 01123689999999986 444566665
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.30 E-value=7.5e-06 Score=82.67 Aligned_cols=173 Identities=12% Similarity=0.037 Sum_probs=115.8
Q ss_pred CHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhh--HHHHhhcCCeEEEE
Q psy14428 208 DAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGH--VRFCTDSRLNVGAY 285 (583)
Q Consensus 208 ~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~--~~~~~~~G~~~~~v 285 (583)
+.+.|+.++++++.. ++..|++ |.|++++++.+ +..+..+|+++++....+... .......+..++.+
T Consensus 54 ~~ea~~~l~~llg~~-----~~~~ii~--~gsgT~a~~~~---i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (388)
T d1h0ca_ 54 MDEIKEGIQYVFQTR-----NPLTLVI--SGSGHCALEAA---LVNVLEPGDSFLVGANGIWGQRAVDIGERIGARVHPM 123 (388)
T ss_dssp HHHHHHHHHHHHTCC-----CSEEEEE--SSCHHHHHHHH---HHHHCCSSCCEEECBSSHHHHHHHHHHHHHC--CBCC
T ss_pred HHHHHHHHHHHhCCC-----CCcEEEE--cCcHHHHHHHH---HHHhhccCCceeeecccceeeeecccccccccccccc
Confidence 466777777777531 1235777 89999999985 444566799999998876544 33345556666666
Q ss_pred ecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchH
Q psy14428 286 RYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAF 365 (583)
Q Consensus 286 ~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~ 365 (583)
+. + ...++|.+..++.+. ..+++++.++..+|.||...+ +++|.++|+++|+++++|.+..--...- +
T Consensus 124 ~~-~-~~~~~~~~~~~~~~~--~~~~~~v~~~~~~n~tG~i~p---i~~i~~~~~~~g~~~~vD~~qs~g~~~~---d-- 191 (388)
T d1h0ca_ 124 TK-D-PGGHYTLQEVEEGLA--QHKPVLLFLTHGESSTGVLQP---LDGFGELCHRYKCLLLVDSVASLGGTPL---Y-- 191 (388)
T ss_dssp BC-C-TTCCCCHHHHHHHHH--HHCCSEEEEESEETTTTEECC---CTTHHHHHHTTTCEEEEECTTTTTTSCC---C--
T ss_pred cc-C-CccccchHHHHHHhc--cCCcceEEEeeeeeccccccC---HHHHHHHhhcccccceeccccccccccc---c--
Confidence 65 2 235778888877664 346678888999999999987 4566788999999999999875433221 0
Q ss_pred HHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHH
Q psy14428 366 SLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLK 415 (583)
Q Consensus 366 ~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~ 415 (583)
.+..+-.+++.|.-|.++.|+ -+|+++. . +..++.+.
T Consensus 192 -----~~~~~~D~~~~s~~K~~~gp~-g~~~~~~--~-----~~~~~~~~ 228 (388)
T d1h0ca_ 192 -----MDRQGIDILYSGSQKALNAPP-GTSLISF--S-----DKAKKKMY 228 (388)
T ss_dssp -----TTTTTCSEEEEESSSTTCCCT-TCEEEEE--C-----HHHHHHHT
T ss_pred -----ccccccceecccccccccCCC-ceEEEee--c-----HHHHHhhh
Confidence 122234477888888886443 4577777 4 35555554
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Probab=98.28 E-value=2.8e-06 Score=87.43 Aligned_cols=263 Identities=11% Similarity=0.039 Sum_probs=149.0
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCC-CCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCC
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIG-GDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGIS 239 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~-G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G 239 (583)
.+...+|+..|.+....|. -.+.+.+++.+.+... .+.... ...+.+..+|+.+.+... .-..+.+.. +++
T Consensus 38 dG~~ylD~~~g~~~~~lGh--~~p~i~~ai~~q~~~~---~~~~~~~~~~~~~~~la~~l~~~~p-~~~~~~v~f--~~s 109 (425)
T d1sffa_ 38 EGREYLDFAGGIAVLNTGH--LHPKVVAAVEAQLKKL---SHTCFQVLAYEPYLELCEIMNQKVP-GDFAKKTLL--VTT 109 (425)
T ss_dssp TCCEEEESSHHHHTCTTCB--TCHHHHHHHHHHTTTC---SCCCTTTEECHHHHHHHHHHHHHSS-CSSCEEEEE--ESS
T ss_pred CCCEEEEcCcCHHhhcccC--CcHHHHHHHHHHHhhc---CCcccccccCcHHHHHHHHHHhhhh-hcccceeee--ecc
Confidence 4567789888877666664 3478888888776542 122111 112334445555543211 011257888 999
Q ss_pred chhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHHhh-cCC-------------eEEEEec--ccCCCCCCChh-hHHH
Q psy14428 240 GSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTD-SRL-------------NVGAYRY--FDNKTNGLDFA-GMME 302 (583)
Q Consensus 240 ~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~-~G~-------------~~~~v~~--~d~~~~g~d~~-~l~~ 302 (583)
|++|.+.+..+.+.... ...|+...-+|......... .|. .....+. ...+....... ..++
T Consensus 110 GseA~e~Alk~ar~~t~-r~~ii~~~~~yHG~t~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (425)
T d1sffa_ 110 GSEAVENAVKIARAATK-RSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHR 188 (425)
T ss_dssp HHHHHHHHHHHHHHHHT-CCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHH
T ss_pred ccchhhhHHHHhhhhhc-ccceEeecCCCcCccccchhhcCCCCcccCCcccccCCccccCCccccccccchhhHHHHHH
Confidence 99999988777666555 46788888887765433322 221 1112221 00100000011 1111
Q ss_pred HHHc-C-CCCcEEEEeCCC-CCCCC-CCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEE
Q psy14428 303 DIKA-M-PERSILFLQTSS-HNPTG-VDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLC 378 (583)
Q Consensus 303 ~l~~-~-~~~~~~i~i~~p-~NPTG-~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi 378 (583)
.+.. . .....++++ -| +--.| ...+++-++.|.++|+++|+++|.||+...|.-.+. ......+ +-.+.
T Consensus 189 ~~~~~~~~~~vaavi~-EPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gR~g~---~~a~~~~-gv~PD-- 261 (425)
T d1sffa_ 189 IFKNDAAPEDIAAIVI-EPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGT---LFAMEQM-GVAPD-- 261 (425)
T ss_dssp HHHHTCCGGGEEEEEE-CSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSGGGGT-TSCCS--
T ss_pred HHHhcccccceEEEEe-cCccCCCCcccCCHHHHHHHHHHHHHcCceEEeccccccCCCcch---hhHHHhc-CCCcc--
Confidence 1111 1 223333443 33 22244 357899999999999999999999999998643331 1111111 22233
Q ss_pred EEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhC---Chhhhhhhhh
Q psy14428 379 LAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILS---DPKLKAQCDE 448 (583)
Q Consensus 379 ~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~---~~~~~~~~~~ 448 (583)
+-+++|.++ .|+-+|.+++ . +++++.+........++.++++..++.+.|+ ++.+..+...
T Consensus 262 -i~~~gK~l~-gG~P~~av~~--~-----~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~~~~~~~~~~ 325 (425)
T d1sffa_ 262 -LTTFAKSIA-GGFPLAGVTG--R-----AEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQENLLQKAND 325 (425)
T ss_dssp -EEEECGGGG-TSSCCEEEEE--E-----HHHHTTSCTTSBCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred -ceecccccC-CCcceEEEEE--c-----HHHHHhhCCCCCCCCCCcCHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 334799998 7999999999 5 5777766554444456777888777776654 3444444433
|
| >d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.18 E-value=2.7e-05 Score=77.66 Aligned_cols=220 Identities=19% Similarity=0.208 Sum_probs=130.5
Q ss_pred CCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCC---CCCC---HHHHHHHHHHHhCCCCCCCCCCCeEEEe
Q psy14428 163 PKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYAN---IGGD---AKFCKLAAQLAYGEDFPAFKDNRLAIVQ 236 (583)
Q Consensus 163 ~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~---~~G~---~~Lr~aia~~~~~~~g~~~~~~~I~i~~ 236 (583)
.+.|+|-..+.- ..+.+.+++...+.+....+|+. ..|. .++.+...+..++-++. .--+|-
T Consensus 23 ~~~l~LiaSEN~-------~S~~v~~a~~S~l~nkyaeG~pg~ryy~G~~~id~iE~la~~ra~~lF~a--~~anVq--- 90 (405)
T d1kl1a_ 23 HAKIELIASENF-------VSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGA--EHANVQ--- 90 (405)
T ss_dssp HHSEECCTTCCC-------CCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHCC--SEEECC---
T ss_pred HcCceEeccCCc-------CCHHHHHHhcCcccCcCcCCCCCccccCCchhHHHHHHHHHHHHHHHhCC--Ccceee---
Confidence 355666555442 45788888877775532333332 2232 22222222222222221 112332
Q ss_pred cCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHH-----HhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCc
Q psy14428 237 GISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRF-----CTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERS 311 (583)
Q Consensus 237 t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~-----~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~ 311 (583)
...|+.|... ++..+.+|||+|+..++...++... +.....+.+.+++ |++++.+|++.+++.+++ .++
T Consensus 91 p~SGs~An~a---v~~all~pGD~im~l~l~~GGHlshg~~~~~~g~~~~~~~y~~-d~~~~~ID~d~l~~~a~~--~kP 164 (405)
T d1kl1a_ 91 PHSGAQANMA---VYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGV-DPETHVIDYDDVREKARL--HRP 164 (405)
T ss_dssp CSSHHHHHHH---HHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECB-CTTTCSBCHHHHHHHHHH--HCC
T ss_pred ccCchHHHHH---HHHHhcCCCCEEEEeecccccccccCccccccceEEEEEEecc-chhcccccHHHHHHHHHh--hCc
Confidence 3344445444 3456778899999999876665432 2233467888898 777788999999998875 356
Q ss_pred EEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCC-CCCCCCCCCchHHHHHHHHhcCcEEEEecCccccccc
Q psy14428 312 ILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYL-GLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLY 390 (583)
Q Consensus 312 ~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~-~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~ 390 (583)
++|++.--.+|-- + +++++.++|.+-+.+++.|-++. .|.-.+.. +.|+ + +-. |+..|.-|++ +
T Consensus 165 klIi~G~S~y~r~--~---d~~~~reIad~vga~l~~D~aH~~GLIa~g~~--~~P~----~-~aD-vvt~tThKtl--r 229 (405)
T d1kl1a_ 165 KLIVAAASAYPRI--I---DFAKFREIADEVGAYLMVDMAHIAGLVAAGLH--PNPV----P-YAH-FVTTTTHKTL--R 229 (405)
T ss_dssp SEEEECCSSCCSC--C---CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSS--CCST----T-TCS-EEEEESSSTT--C
T ss_pred ceEEecccccccc--c---ChHHHHHHHhhhCCEEecchhhHhhhhhhhhc--CChh----h-hhh-heeccccccc--c
Confidence 6777655555542 3 35677778888899999999963 33333211 1112 1 223 4467899998 7
Q ss_pred CccceEEEEEcCCchhHHHHHHHHHHHHhccc
Q psy14428 391 GERVGTFSVLTPTSDETERIMSQLKILIRGFY 422 (583)
Q Consensus 391 GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~ 422 (583)
|=|-|.+++ . +++.+++.+..-...
T Consensus 230 GPrgg~I~~--~-----~~~~~~i~~avfPg~ 254 (405)
T d1kl1a_ 230 GPRGGMILC--Q-----EQFAKQIDKAIFPGI 254 (405)
T ss_dssp CCSCEEEEE--C-----HHHHHHHHHHHTTTT
T ss_pred CCCCceEEe--c-----chhHHHHHhhhCccc
Confidence 999999998 5 466666666544333
|
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Probab=98.15 E-value=4.8e-05 Score=77.87 Aligned_cols=264 Identities=8% Similarity=-0.011 Sum_probs=147.7
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCC--CCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecC
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANI--GGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGI 238 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~--~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~ 238 (583)
.+...+|+..|.+....|.- .|.+.+++.+.++.. .|... ...++. ..+++.+.... ...-+++.. ++
T Consensus 41 dG~~ylD~~~g~~~~~lGh~--~p~i~~Ai~~q~~~~---~~~~~~~~~~~~~-~~l~~~l~~~~--~~~~~~v~f--~~ 110 (429)
T d1s0aa_ 41 DGRRLVDGMSSWWAAIHGYN--HPQLNAAMKSQIDAM---SHVMFGGITHAPA-IELCRKLVAMT--PQPLECVFL--AD 110 (429)
T ss_dssp TSCEEEESSTTTTTCTTCBS--CHHHHHHHHHHHHHC---SCCCCSSEECHHH-HHHHHHHHHHS--CTTCCEEEE--ES
T ss_pred CCCEEEECcccHHHHhhcCC--cHHHHHHHHHHHHhc---CCcccCCccchHH-HHHHHHHHhhh--ccCcceeee--cc
Confidence 45577899888877667753 478888877766542 12111 112222 22233332211 123467888 89
Q ss_pred CchhHHHHHHHHHHHhC----CCCCEEEEcCCCChhhHH-HHhhcC-------------CeEEEEecccC-CCCCC---C
Q psy14428 239 SGSGSLRVGTAFLERFY----PGVKTVYFPTPTWNGHVR-FCTDSR-------------LNVGAYRYFDN-KTNGL---D 296 (583)
Q Consensus 239 G~~~al~l~~~~l~~~~----~~gd~Vlv~~P~y~~~~~-~~~~~G-------------~~~~~v~~~d~-~~~g~---d 296 (583)
++++|.+.+..+.+... .+..+|+...-+|..... .....| ......|.... ..... +
T Consensus 111 sGseA~e~A~k~ar~~~~~~g~~~~~ii~~~~~yHG~t~~a~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (429)
T d1s0aa_ 111 SGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERD 190 (429)
T ss_dssp SHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGG
T ss_pred ccccchhhhhhhhhheeecccccccEEEEecCCccccchhhhhhcCCccccccccCccccccccccccccccccccchhh
Confidence 99999987755554321 334578888777765432 222211 11222222111 11112 3
Q ss_pred hhhHHHHHHcCCCCcEEEEeCC-CCCCCCC-CCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhc
Q psy14428 297 FAGMMEDIKAMPERSILFLQTS-SHNPTGV-DLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEV 374 (583)
Q Consensus 297 ~~~l~~~l~~~~~~~~~i~i~~-p~NPTG~-~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~ 374 (583)
++.+++.+........++++-- .++--|. ..+++-+++|.++|+++|+++|.||+...|..-+. ...... .+-.
T Consensus 191 ~~~~~~~~~~~~~~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~---~~~~~~-~~v~ 266 (429)
T d1s0aa_ 191 MVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGK---LFACEH-AEIA 266 (429)
T ss_dssp GHHHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSGGGG-GTCC
T ss_pred hhhhhhhhhhcCCccceeeecceeccCCCccCCCHHHHHHHHHHHHHcCcceehhhcccccccccc---cccccc-ceec
Confidence 4445444444344455554432 2354444 56899999999999999999999999999844331 111111 1222
Q ss_pred CcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHh-----ccccCCChHHHHHHHHHhC---Chhhhhhh
Q psy14428 375 GQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIR-----GFYSNPPIHGARIVTEILS---DPKLKAQC 446 (583)
Q Consensus 375 ~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~-----~~~~~~s~~~q~~~~~~l~---~~~~~~~~ 446 (583)
+.++ .++|.++--++-+|.+++ . +++.+.+..... ...++.++++..++.+.|+ ++.+..+.
T Consensus 267 PDi~---~~gK~l~gG~~p~~av~~--~-----~~i~~~~~~~~~~~~~~~~T~~gnp~~~aaa~a~L~~i~~~~~~~~~ 336 (429)
T d1s0aa_ 267 PDIL---CLGKALTGGTMTLSATLT--T-----REVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQV 336 (429)
T ss_dssp CSEE---EECGGGGTSSSCCEEEEE--C-----HHHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cccc---ccccccccccccccchhh--H-----HHHHhccCCCCCcceeecCCCCCCcccchhhhccccccccccccchh
Confidence 3343 358999734489999999 5 577777764321 2345566777766666554 44444433
Q ss_pred hh
Q psy14428 447 DE 448 (583)
Q Consensus 447 ~~ 448 (583)
.+
T Consensus 337 ~~ 338 (429)
T d1s0aa_ 337 AD 338 (429)
T ss_dssp HH
T ss_pred hH
Confidence 33
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=98.11 E-value=5.8e-05 Score=76.65 Aligned_cols=242 Identities=12% Similarity=0.108 Sum_probs=133.7
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCc
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISG 240 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~ 240 (583)
.+...+|+..|.+....|.- .|.+.+++.+.+.+ ..|....-...-.+.+++.+... ...+.+.+ +..+
T Consensus 37 dG~~ylD~~~g~~~~~lGh~--~p~v~~Ai~~q~~~---~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~--~~sg 105 (404)
T d1z7da1 37 NDKRYYDFLSAYSSVNQGHC--HPNILNAMINQAKN---LTICSRAFFSVPLGICERYLTNL----LGYDKVLM--MNTG 105 (404)
T ss_dssp TCCEEEESSHHHHTTTTCBT--CHHHHHHHHHHHTT---CSCCCTTSEEHHHHHHHHHHHHH----HTCSEEEE--ESSH
T ss_pred CCCEEEEccccHHHHhhhcC--cHHHHHHHHHHHHh---CCCcccccchHHHHHHHHhhhhc----cccceeee--eccc
Confidence 45677899888887666643 47788887766654 12221111112223333333321 12356777 7888
Q ss_pred hhHHHHHHHHHHHhC-------CCCCEEEEcCCCChhhHHHHhhcCC-------------eEEEEecccCCCCCCChhhH
Q psy14428 241 SGSLRVGTAFLERFY-------PGVKTVYFPTPTWNGHVRFCTDSRL-------------NVGAYRYFDNKTNGLDFAGM 300 (583)
Q Consensus 241 ~~al~l~~~~l~~~~-------~~gd~Vlv~~P~y~~~~~~~~~~G~-------------~~~~v~~~d~~~~g~d~~~l 300 (583)
++|.+.+..+.+... .....++...-+|............ .+..+|. + +.+.+
T Consensus 106 s~a~~~a~k~ar~~~~~~~~~~~~~~~~~~~~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---~~~~l 178 (404)
T d1z7da1 106 AEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPY----D---DLEAL 178 (404)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------------CEEEECT----T---CHHHH
T ss_pred cchHHHHHHHHHHHHhhcccccccccccccccccCCCCcccccccccccccccCCCCCCcccccccc----c---hHHHH
Confidence 888887654443221 1123566666666554332222211 1111211 1 45555
Q ss_pred HHHHHcCCCCcEEEEeCCC-CCCCCCC-CCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEE
Q psy14428 301 MEDIKAMPERSILFLQTSS-HNPTGVD-LSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLC 378 (583)
Q Consensus 301 ~~~l~~~~~~~~~i~i~~p-~NPTG~~-~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi 378 (583)
+..+. .++..++++ -| +.-.|.. .+++-+++|.++|+++|+++|.||+...|.--+ .......+ +-.+.++
T Consensus 179 ~~~~~--~~~iAavi~-EPi~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~tGfgRtG---~~~~~e~~-gv~PDiv 251 (404)
T d1z7da1 179 EEELK--DPNVCAFIV-EPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTG---KLLCVHHY-NVKPDVI 251 (404)
T ss_dssp HHHHT--STTEEEEEE-CSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTS---SSSGGGGG-TCCCSEE
T ss_pred HHHhc--CCCEEEEEE-EEEcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccCCCccc---cccccccc-CCCCCEE
Confidence 55552 233344444 44 3344544 566778999999999999999999998884333 11122222 2223344
Q ss_pred EEecCcccccccC-ccceEEEEEcCCchhHHHHHHHHHHHHhccccCCChHHHHHHHHHhC
Q psy14428 379 LAQSFSKNMGLYG-ERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILS 438 (583)
Q Consensus 379 ~i~S~SK~~~l~G-lRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~~~q~~~~~~l~ 438 (583)
+++|.++ .| +-+|.+++ . +++.+.+.......+++.++++..++.+.|+
T Consensus 252 ---t~gK~l~-gG~~p~~~v~~--~-----~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~ 301 (404)
T d1z7da1 252 ---LLGKALS-GGHYPISAVLA--N-----DDIMLVIKPGEHGSTYGGNPLAASICVEALN 301 (404)
T ss_dssp ---EECGGGG-TTSSCCEEEEE--C-----HHHHTTCCTTCCCCTTTTCHHHHHHHHHHHH
T ss_pred ---EEccccc-CCCCCcccccc--h-----HHHHccCCCCCcCcCCCCCcchhhhhhhhhh
Confidence 7899998 55 78999999 6 5677766554334456678888888777664
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Probab=98.11 E-value=6.6e-05 Score=74.96 Aligned_cols=197 Identities=11% Similarity=0.064 Sum_probs=120.0
Q ss_pred CCChHHHHHHHHHhccCCCCCCCC--CCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCC
Q psy14428 181 YVLPSVKEAERRIYEKNLDHEYAN--IGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGV 258 (583)
Q Consensus 181 ~~~~~v~~a~~~~~~~~~~~~Y~~--~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~g 258 (583)
..++.|.+++.. ....+++. ..-..+.|+.++++++.. +...|++ +.|++++++.+ +..+..+|
T Consensus 28 ~v~~~Vl~am~~----~~~~hr~~ef~~i~~~~r~~l~~ll~~~-----~~~~i~~--~g~gT~~~~~~---~~~~~~~~ 93 (377)
T d1vjoa_ 28 NAHPSVLQAMNV----SPVGHLDPAFLALMDEIQSLLRYVWQTE-----NPLTIAV--SGTGTAAMEAT---IANAVEPG 93 (377)
T ss_dssp CCCHHHHHHHSS----CCCCTTSHHHHHHHHHHHHHHHHHHTCC-----CSCEEEE--SSCHHHHHHHH---HHHHCCTT
T ss_pred CCCHHHHHHhCc----CCCCCCCHHHHHHHHHHHHHHHHHhCCC-----CCeEEEE--cCcHHHHHHHH---HHhccccc
Confidence 356778776532 11223322 122466777777777521 2345666 78889999885 44566668
Q ss_pred CEEEEcCCCChhh--HHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHH
Q psy14428 259 KTVYFPTPTWNGH--VRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLA 336 (583)
Q Consensus 259 d~Vlv~~P~y~~~--~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~ 336 (583)
+.+++..-.+... ....+..+.....+.. + .+...+.+..+.... ..+++++.++.-+|.||...+ ++++.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~tg~~~~---i~~i~ 166 (377)
T d1vjoa_ 94 DVVLIGVAGYFGNRLVDMAGRYGADVRTISK-P-WGEVFSLEELRTALE--THRPAILALVHAETSTGARQP---LEGVG 166 (377)
T ss_dssp CEEEEEESSHHHHHHHHHHHHTTCEEEEEEC-C-TTCCCCHHHHHHHHH--HHCCSEEEEESEETTTTEECC---CTTHH
T ss_pred cccceeeechhhhhhhhhhhhhccccccccc-C-CCCcccchhhhhhhh--cCcceeeeeeeeeccceeeec---hhhhh
Confidence 9888776654332 3344445666655554 2 223445555554443 346677778888999999887 55668
Q ss_pred HHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHH
Q psy14428 337 VVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKI 416 (583)
Q Consensus 337 ~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~ 416 (583)
++|++++.+++.|.+..--...- . .+..+-.+++.|..|.++.|+ -+|.++. . +..++....
T Consensus 167 ~~~~~~g~~~~vDa~~~~g~~~~------~----~~~~~~d~~~~s~~K~~~gp~-g~~~~~~--~-----~~~~~~~~~ 228 (377)
T d1vjoa_ 167 ELCREFGTLLLVDTVTSLGGVPI------F----LDAWGVDLAYSCSQKGLGCSP-GASPFTM--S-----SRAIEKLQR 228 (377)
T ss_dssp HHHHHHTCEEEEECTTTTTTSCC------C----TTTTTCSEEECCSSSTTCSCS-SCEEEEE--C-----HHHHHHHHT
T ss_pred hhhhhccceEEEecchhhhhhhh------c----ccccccceeeecccccccCCC-EEEEecc--h-----hhHHhhhhc
Confidence 88889999999999985332211 0 123345567788888775343 4566666 4 355555544
|
| >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Escherichia coli [TaxId: 562]
Probab=98.10 E-value=0.00027 Score=70.58 Aligned_cols=227 Identities=17% Similarity=0.188 Sum_probs=131.3
Q ss_pred CCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCCC---CCCC---HHHHHHHHHHHhCCCCCCCCCCCeEEEe
Q psy14428 163 PKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYAN---IGGD---AKFCKLAAQLAYGEDFPAFKDNRLAIVQ 236 (583)
Q Consensus 163 ~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~---~~G~---~~Lr~aia~~~~~~~g~~~~~~~I~i~~ 236 (583)
.+.|+|-..+.- .++.+.+++...+.+....+|+. ..|. .++.+...+...+-++. .-.+|-.
T Consensus 26 ~~~i~LiaSEN~-------~S~~v~~a~~S~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~a--~~anVqp-- 94 (416)
T d1dfoa_ 26 EEHIELIASENY-------TSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGA--DYANVQP-- 94 (416)
T ss_dssp HHSEECCTTCCC-------CCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTC--SEEECCC--
T ss_pred HcCceEecCccc-------CCHHHHHHhcCcccCcccCCCCCCcccCCChhHHHHHHHHHHHHHHHhCC--Ccceeec--
Confidence 355666554442 45888888877775532333332 2233 22222222222222221 1123333
Q ss_pred cCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHH-----HhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCc
Q psy14428 237 GISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRF-----CTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERS 311 (583)
Q Consensus 237 t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~-----~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~ 311 (583)
.+ |+.|... ++..+++|||+|+..++...++... +.....+.+++++ |+ +..+|.+.+++..++ .++
T Consensus 95 ~S-Gs~AN~a---v~~All~pGD~Il~l~l~~GGHlshg~~~~~~g~~~~~~~y~~-d~-~~~IDyd~l~~~a~~--~kP 166 (416)
T d1dfoa_ 95 HS-GSQANFA---VYTALLEPGDTVLGMNLAHGGHLTHGSPVNFSGKLYNIVPYGI-DA-TGHIDYADLEKQAKE--HKP 166 (416)
T ss_dssp SS-HHHHHHH---HHHHHCCTTCEEEEECTTTTCCGGGTCTTSHHHHHSEEEEECB-CS-SSSBCHHHHHHHHHH--HCC
T ss_pred cc-CccHHHH---HHHHhcCCCCeeeeccccccccccccccccccCceEEEEeccc-CC-ccCccHHHHHHHHHH--hcc
Confidence 44 4445544 3455677899999999887765432 2223457788887 54 456999999988765 355
Q ss_pred EEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCC-CCCCCCCCCchHHHHHHHHhcCcEEEEecCccccccc
Q psy14428 312 ILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYL-GLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLY 390 (583)
Q Consensus 312 ~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~-~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~ 390 (583)
++++..--.+| ..++ ++++.++|.+.+.+++.|.++. +|.-.+.. +.|+ +. . -|+..|..|+| +
T Consensus 167 klIi~G~S~y~--r~~d---~~~~reiad~vga~l~~D~aH~~GLIa~g~~--~sP~----~~-a-Dvvt~tThKtl--r 231 (416)
T d1dfoa_ 167 KMIIGGFSAYS--GVVD---WAKMREIADSIGAYLFVDMAHVAGLVAAGVY--PNPV----PH-A-HVVTTTTHKTL--A 231 (416)
T ss_dssp SEEEEECSSCC--SCCC---HHHHHHHHHHTTCEEEEECTTTHHHHHHTSS--CCCT----TT-S-SEEEEESSSTT--C
T ss_pred ceEEecccccc--cccC---HHHHHHHHHhcCceEEcchhhhhcceecccc--CCcc----cc-c-ceeeeehhhcc--c
Confidence 66665543433 2333 5677788889999999999973 22222210 0111 11 1 37888999998 7
Q ss_pred CccceEEEEEcCCchhHHHHHHHHHHHHhccccCCCh
Q psy14428 391 GERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPI 427 (583)
Q Consensus 391 GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~~s~ 427 (583)
|-|-|.+++ .... +++.+++.+.......+.+.
T Consensus 232 GPrggiI~~--~~~~--~~~~~~i~~avfPg~qggp~ 264 (416)
T d1dfoa_ 232 GPRGGLILA--KGGS--EELYKKLNSAVFPGGQGGPL 264 (416)
T ss_dssp CCSCEEEEE--SSCC--HHHHHHHHHHHTTTTCSSCC
T ss_pred CCCceEEEe--ccch--HhHHHHHHhhhCcccccCcc
Confidence 999999998 5332 46777776655444444333
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.09 E-value=4.5e-05 Score=79.14 Aligned_cols=259 Identities=8% Similarity=-0.071 Sum_probs=160.1
Q ss_pred HHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCC-------CCCeEEEecCCchhHHHHHHHHHHHh-CC
Q psy14428 185 SVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFK-------DNRLAIVQGISGSGSLRVGTAFLERF-YP 256 (583)
Q Consensus 185 ~v~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~-------~~~I~i~~t~G~~~al~l~~~~l~~~-~~ 256 (583)
.+-+.+......+ ...|.......++.+.+.+|+.+..|.+-. ...-++ |+||++|...+..+.+.. .+
T Consensus 89 ~l~~~~~~~~n~n-~~~~~~sp~~t~iE~~v~~wl~~l~g~p~~~~~~~~~~~~G~~--~~Ggs~anl~al~~AR~~~~~ 165 (476)
T d1js3a_ 89 MLADMLCGAIGCI-GFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVI--QGSASEATLVALLAARTKVVR 165 (476)
T ss_dssp HHHHHHHHHHCCC-CSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEE--ESCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccc-ccchhhhhhHHHHHHHHHHHHHHHhCCCcccccCCCCCCCceE--CCcHHHHHHHHHHHHHHHHHH
Confidence 4444445555332 444555666788899999999887776422 223456 999999987763332221 00
Q ss_pred ------C---------CCEEEEcCCCChhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcC---CCCcEEEEeCC
Q psy14428 257 ------G---------VKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAM---PERSILFLQTS 318 (583)
Q Consensus 257 ------~---------gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~---~~~~~~i~i~~ 318 (583)
. .-.|++++-+.......+...|..++.+|. |+ ++.+|++.|++.+++. ...+.+++.+-
T Consensus 166 ~~~~~~~g~~~~~~~~~~vv~~s~~~H~Si~ka~~~lGl~~~~v~~-d~-~~~md~~~L~~~i~~~~~~g~~p~~Vvata 243 (476)
T d1js3a_ 166 RLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPS-DG-KFAMRASALQEALERDKAAGLIPFFVVATL 243 (476)
T ss_dssp HHHHHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHHHTCEEEEECC-CT-TSCCCHHHHHHHHHHHHHTTCEEEEEEEEB
T ss_pred hhcccccCcccccccCceEEEecccccHHHHHHHHhcCceEEEecc-CC-CCCcCHHHHHHHHHHHHhcCCCcEEEeecC
Confidence 0 124677777777788888999999999998 55 4789999999999753 34456777788
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEE
Q psy14428 319 SHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFS 398 (583)
Q Consensus 319 p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv 398 (583)
..+.||.+=+ +++|.++|+++++|+-+|-+|+.+..-.. +...-+.. .+.- --+.-++.|.++.|. -.|.++
T Consensus 244 Gtt~~G~iDp---l~~I~~i~~~~~~wlHVDAA~Gg~~~~~~-~~~~~~~g-i~~a--DSit~d~HK~l~~P~-~~g~~l 315 (476)
T d1js3a_ 244 GTTSCCSFDN---LLEVGPICHEEDIWLHVDAAYAGSAFICP-EFRHLLNG-VEFA--DSFNFNPHKWLLVNF-DCSAMW 315 (476)
T ss_dssp SCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTGGGGGGST-TTGGGGTT-GGGC--SEEEECHHHHSSCCS-SCEEEE
T ss_pred CCccceeecc---HHHHHHHHHhcCcEEEEecccchhhhhhc-chhhhhcC-Cccc--ceeeecCccccccCC-cceeec
Confidence 8999998766 55668889999999999999987654321 01111111 1111 133446789887554 678888
Q ss_pred EEcCCchhHHHHHHHHHHH-------Hh----------cc---ccCCChHHHHHHHHHhCChhhhhhhhhHHHHHHHHHH
Q psy14428 399 VLTPTSDETERIMSQLKIL-------IR----------GF---YSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKI 458 (583)
Q Consensus 399 ~~~p~~~~~~~li~~l~~~-------~~----------~~---~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~l~~ 458 (583)
. .++. .+...+... .. .. .-....+..+++...+....+.+.+++.....+.+.+
T Consensus 316 ~--r~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~al~lw~~l~~~G~~g~~~~i~~~~~lA~~l~~ 390 (476)
T d1js3a_ 316 V--KRRT---DLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEA 390 (476)
T ss_dssp E--SCHH---HHHGGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred c--cchH---HHHHHHhcChhhhccccccccccccccccccccchhhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH
Confidence 8 6532 222111100 00 00 1122345566777777777777776666555555555
Q ss_pred HHh
Q psy14428 459 LIR 461 (583)
Q Consensus 459 ~~r 461 (583)
.++
T Consensus 391 ~l~ 393 (476)
T d1js3a_ 391 FVL 393 (476)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
|
| >d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Subgroup IV putative aspartate aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=97.96 E-value=0.00012 Score=72.71 Aligned_cols=180 Identities=17% Similarity=0.067 Sum_probs=111.3
Q ss_pred CChHHHHHHHHHhccCCCCCCCCC--CCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCC
Q psy14428 182 VLPSVKEAERRIYEKNLDHEYANI--GGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVK 259 (583)
Q Consensus 182 ~~~~v~~a~~~~~~~~~~~~Y~~~--~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd 259 (583)
.++.|.+++.+-. ..++++. .-..+.|+.+++.++ .+.+-|++ +.|++.+++.+ +..+..+||
T Consensus 11 v~~~V~~am~~~~----~~hr~~~f~~i~~~~~~~l~~ll~------~~~~~i~~--~gsgT~a~e~~---~~nl~~~g~ 75 (348)
T d1iuga_ 11 LHPKALEALARPQ----LHHRTEAAREVFLKARGLLREAFR------TEGEVLIL--TGSGTLAMEAL---VKNLFAPGE 75 (348)
T ss_dssp CCHHHHHHHHSCC----CCTTSHHHHHHHHHHHHHHHHHHT------CSSEEEEE--ESCHHHHHHHH---HHHHCCTTC
T ss_pred CCHHHHHHhcCCC----CCCCCHHHHHHHHHHHHHHHHHhC------CCCCEEEE--eCchHHHHHHH---HHhcccccc
Confidence 5677777754311 1222210 112344555555554 23456677 88999999885 444566699
Q ss_pred EEEEcCCC-Ch-hhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHH
Q psy14428 260 TVYFPTPT-WN-GHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAV 337 (583)
Q Consensus 260 ~Vlv~~P~-y~-~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~ 337 (583)
+|++..-. |. .+...++.+|.++..+.. +. ...++++.. ...+.+.+++++..+.||...+.+++ .+
T Consensus 76 ~vlv~~~G~f~~~~~~~a~~~~~~~~~~~~-~~-g~~~~~~~~------~~~~~~~v~~~h~eTstG~~~~i~~i---~~ 144 (348)
T d1iuga_ 76 RVLVPVYGKFSERFYEIALEAGLVVERLDY-PY-GDTPRPEDV------AKEGYAGLLLVHSETSTGALADLPAL---AR 144 (348)
T ss_dssp EEEEEECSHHHHHHHHHHHHTTCEEEEEEC-CT-TCCCCTTTS------CCSSCSEEEEESEETTTTEECCHHHH---HH
T ss_pred cceeecchHHHHHHHHHHHhcCcccccccc-cC-CCccccccc------cccCCCeeEEEecchhhhhhccHHHH---HH
Confidence 88887666 43 345567788888887776 22 233443332 24567788888999999999997666 55
Q ss_pred HHHhc--CeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccc-cccCccceEEEE
Q psy14428 338 VVKQR--HLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNM-GLYGERVGTFSV 399 (583)
Q Consensus 338 ~a~~~--~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~-~l~GlRiG~lv~ 399 (583)
.|+++ +.++++|.+-+-....= + .+..+--+++.|--|.+ |.||+ |.+++
T Consensus 145 ~~~~~~~~~l~~vDavss~g~~~i---~-------~d~~~iD~~~~~sqK~l~gppG~--~~v~~ 197 (348)
T d1iuga_ 145 AFKEKNPEGLVGADMVTSLLVGEV---A-------LEAMGVDAAASGSQKGLMCPPGL--GFVAL 197 (348)
T ss_dssp HHHHHCTTCEEEEECTTTBTTBCC---C-------SGGGTCSEEEEESSSTTCCCSCE--EEEEE
T ss_pred HHHhhhccceeechhhhccccccc---c-------cccccCCEEEeccccceecCCce--eeeee
Confidence 55555 57888888754332210 0 12223446777888988 87885 88888
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Probab=97.84 E-value=2.2e-06 Score=87.13 Aligned_cols=112 Identities=30% Similarity=0.494 Sum_probs=83.3
Q ss_pred EecCCCCcCchhhhhhcC-----CCceeeeeccCCCCcc--------------------------cchhhhHHHH-----
Q psy14428 30 VYFPTPTWNGHVRFCTDS-----RLNVGAYRYFDNKTNG--------------------------LDFAGMMEDI----- 73 (583)
Q Consensus 30 ~~~~~p~w~n~~~~~~~~-----~~~~~~y~~~~~~~~~--------------------------~d~~~~~~~~----- 73 (583)
-..+||+++....+-.|. .|.|+.|+.-|+++.. .+|-..+.+.
T Consensus 7 ~~~~d~i~~l~~~~~~d~~~~~InL~iG~~~d~~g~~~~~~~V~~A~~~~~~~~~~~~Y~p~~G~~~lr~aia~~~~~~~ 86 (394)
T d2ay1a_ 7 PQAPDKILALMGEFRADPRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMGELILGDG 86 (394)
T ss_dssp CCCCCSHHHHHHHHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCSSCCHHHHHHHHHHHHGGG
T ss_pred CCCCChHHHHHHHHhCCCCCCCEEccCCCccCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhccc
Confidence 456677776655555443 2667777665555433 4455555442
Q ss_pred ----HhhhhhcccccchhhhHHHHHHHhCCCCcEEEeCCCCCCChHhHhhhcCCcccccccccCCCCCccccC
Q psy14428 74 ----KLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAG 142 (583)
Q Consensus 74 ----~~a~~q~~~gtgal~~~~~~~~~~~~~~~~~~i~~ptw~nh~~if~~~g~~~~~y~Y~~~~~~~~d~~~ 142 (583)
....+||.||+|++.+++.++....|+ ..|++++|+|++|..+++.+|.++..|++++......+++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g-d~V~~p~p~~~~y~~~~~~~g~~~v~~~~~~~~~~~~~~~~ 158 (394)
T d2ay1a_ 87 LKSETTATLATVGGTGALRQALELARMANPD-LRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEG 158 (394)
T ss_dssp CCGGGEEEEEEEHHHHHHHHHHHHHHHHCTT-CCEEEEESCCHHHHHHHHHHTCCEEEEECEETTTTEECHHH
T ss_pred cccccccceeccCchHHHHHHHHHhhhcCCc-eEEEEecccccchHHHHHHcCCEEEEecccchhcccccchh
Confidence 355689999999999999998888776 78999999999999999999999999999887776555443
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Probab=97.80 E-value=9.6e-06 Score=82.36 Aligned_cols=116 Identities=29% Similarity=0.605 Sum_probs=85.2
Q ss_pred eEEecCCCCcCchhhhhhcC-----CCceeeeeccCCCCcc---------------------------cchhhhHHHH--
Q psy14428 28 KTVYFPTPTWNGHVRFCTDS-----RLNVGAYRYFDNKTNG---------------------------LDFAGMMEDI-- 73 (583)
Q Consensus 28 ~~~~~~~p~w~n~~~~~~~~-----~~~~~~y~~~~~~~~~---------------------------~d~~~~~~~~-- 73 (583)
-+-|+.||+.+.-..+-.|. .|.|+.|+.-++++.. ..|-..+.+.
T Consensus 5 ~~~~~~dpi~~~~~~~~~d~~~~kInL~iG~~~d~~g~~p~~~~V~~A~~~l~~~~~~~~~Y~p~~G~~~lR~aia~~~~ 84 (397)
T d3tata_ 5 VDAYAGDPILTLMERFKEDPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLF 84 (397)
T ss_dssp CCCCCCCTTTTHHHHHHHSCCSSCEECSCCSCCCTTSSCCCCHHHHHHHHHHTTSCCSSBCCCCTTCCHHHHHHHHHHHT
T ss_pred CCCCCCCcHHHHHHHHhcCCCCCcEEccCCCCcCCCCCCCCcHHHHHHHHHHHhCcccCCCCCCcccCHHHHHHHHHHHh
Confidence 35688888888776665543 3778887776666553 3333333331
Q ss_pred ----------HhhhhhcccccchhhhHHHHHHHhCCCCcEEEeCCCCCCChHhHhhhcCCcccccccccCCCCCccccCc
Q psy14428 74 ----------KLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGM 143 (583)
Q Consensus 74 ----------~~a~~q~~~gtgal~~~~~~~~~~~~~~~~~~i~~ptw~nh~~if~~~g~~~~~y~Y~~~~~~~~d~~~m 143 (583)
++...++.+++|++.+.+.++....|+ ..|+|++|+|++|..+|+..|.++..|++.+.+...+|++.+
T Consensus 85 ~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~pg-d~Vlv~~P~y~~y~~~~~~~G~~~~~v~~~~~~~~~~~~~~~ 163 (397)
T d3tata_ 85 GADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPE-SGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDL 163 (397)
T ss_dssp CSSCHHHHTTCEEECCBSHHHHHHHHHHHHHHHHCSS-CCCEECSSCCTTHHHHHHTTTCCCEECCCCCTTTSSCCHHHH
T ss_pred hccCCcCCcCcEEEecCchhHHHHHHHHHHhhhcCCC-CcceecccCccccHHHHHHcCCEEEEEecchhhccccchHHH
Confidence 123457788888888888888888886 789999999999999999999999999998877776655544
Q ss_pred c
Q psy14428 144 M 144 (583)
Q Consensus 144 ~ 144 (583)
.
T Consensus 164 ~ 164 (397)
T d3tata_ 164 L 164 (397)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Probab=97.74 E-value=0.00014 Score=72.92 Aligned_cols=194 Identities=9% Similarity=0.027 Sum_probs=121.4
Q ss_pred CChHHHHHHHHHhccCCCCCCCC--CCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCC
Q psy14428 182 VLPSVKEAERRIYEKNLDHEYAN--IGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVK 259 (583)
Q Consensus 182 ~~~~v~~a~~~~~~~~~~~~Y~~--~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd 259 (583)
.++.|++|+.. ....+++. ..-..+.|+.++++++.. +.+-|++ +.|++++++.+ +..+..+|+
T Consensus 28 ~~~~V~~Am~~----~~~~hr~~ef~~i~~~~r~~L~~ll~~~-----~~~~i~~--~gsgT~a~ea~---~~~l~~~~~ 93 (388)
T d2ch1a1 28 CSKRVLTAMTN----TVLSNFHAELFRTMDEVKDGLRYIFQTE-----NRATMCV--SGSAHAGMEAM---LSNLLEEGD 93 (388)
T ss_dssp CCHHHHHHTTS----CCCCTTCHHHHHHHHHHHHHHHHHHTCC-----CSCEEEE--SSCHHHHHHHH---HHHHCCTTC
T ss_pred CCHHHHHHhCc----CCCCCCCHHHHHHHHHHHHHHHHHhCCC-----CCeEEEE--cCcHHHHHHHH---HHHhccccc
Confidence 56778776432 11233332 122356777777777521 2234555 77889999984 555666799
Q ss_pred EEEEcCCCChh--hHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHH
Q psy14428 260 TVYFPTPTWNG--HVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAV 337 (583)
Q Consensus 260 ~Vlv~~P~y~~--~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~ 337 (583)
.|++..-.... .....+..+...+.+.. ++ ....+.+..++... ..++++++++.-+|.||...+.++. .+
T Consensus 94 ~vl~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~--~~~~~~v~~~~~~t~tG~~~~~~~i---~~ 166 (388)
T d2ch1a1 94 RVLIAVNGIWAERAVEMSERYGADVRTIEG-PP-DRPFSLETLARAIE--LHQPKCLFLTHGDSSSGLLQPLEGV---GQ 166 (388)
T ss_dssp EEEEEESSHHHHHHHHHHHHTTCEEEEEEC-CT-TSCCCHHHHHHHHH--HHCCSEEEEESEETTTTEECCCTTH---HH
T ss_pred cccccccccccccchhhhhhhccccccccc-cc-ccccchhhhhhhhc--cCCcceeeeeecccccccccchhhh---cc
Confidence 98877665433 33446667888877776 32 34567766666553 3467888889999999999886554 67
Q ss_pred HHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCccccc-ccCccceEEEEEcCCchhHHHHHHHHH
Q psy14428 338 VVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMG-LYGERVGTFSVLTPTSDETERIMSQLK 415 (583)
Q Consensus 338 ~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~-l~GlRiG~lv~~~p~~~~~~~li~~l~ 415 (583)
+|++++.++++|.+..-....- + .+..+-.+++.|--|.++ .+| +|.++. . +..++.+.
T Consensus 167 ~~~~~~~~~~vD~~ss~g~~pi---d-------~~~~~~d~~~~s~~K~~~gp~G--~g~~~~--~-----~~~~~~~~ 226 (388)
T d2ch1a1 167 ICHQHDCLLIVDAVASLCGVPF---Y-------MDKWEIDAVYTGAQKVLGAPPG--ITPISI--S-----PKALDVIR 226 (388)
T ss_dssp HHHHTTCEEEEECTTTBTTBCC---C-------TTTTTCCEEECCCC-CCCCCSS--CEEEEE--C-----HHHHHHHH
T ss_pred hhccccceeeeeeeeccccccc---c-------hhccCceEEEEccccccCCCCe--EEEEec--c-----HHHHHhhh
Confidence 7889999999999976544221 1 123344566777777664 344 466666 4 35555544
|
| >d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=97.66 E-value=0.00066 Score=68.51 Aligned_cols=205 Identities=14% Similarity=0.100 Sum_probs=108.7
Q ss_pred CccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCC------CCCCCHHHHHHHHHHHhCCCCCCCCCC--CeEEE
Q psy14428 164 KKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYA------NIGGDAKFCKLAAQLAYGEDFPAFKDN--RLAIV 235 (583)
Q Consensus 164 ~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~------~~~G~~~Lr~aia~~~~~~~g~~~~~~--~I~i~ 235 (583)
..|+|-..+.- .++.+++++...+.+....+|+ ...-..++.....+...+-++.+.... ||-
T Consensus 28 ~~l~LiaSEN~-------~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~~a~w~vNVq-- 98 (463)
T d2a7va1 28 RGLELIASENF-------CSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQ-- 98 (463)
T ss_dssp HSEECCTTCCC-------CCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTTTEEEECC--
T ss_pred cCeeEeccCCc-------CCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhCCCchhccCCcc--
Confidence 44666555442 5578888887777543233332 222234444433344433343332221 233
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHHH--------hhcC--CeEEEEecccCCCCCCChhhHHHHHH
Q psy14428 236 QGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFC--------TDSR--LNVGAYRYFDNKTNGLDFAGMMEDIK 305 (583)
Q Consensus 236 ~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~~--------~~~G--~~~~~v~~~d~~~~g~d~~~l~~~l~ 305 (583)
...++.|... ++..+++|||+|+..++...++..-- ...| .+.+++.+ |++++.+|.+.+++..+
T Consensus 99 -p~SGs~An~a---v~~all~pgD~Im~l~l~~GGHlshg~~~~~~~~~~~g~~~~~~~Y~~-d~~~~~IDyd~~~~~a~ 173 (463)
T d2a7va1 99 -PYSGSPANLA---VYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKL-NPKTGLIDYNQLALTAR 173 (463)
T ss_dssp -CSSHHHHHHH---HHHHHCCSCEECCC-------------------------------CCB-CTTTCSBCHHHHHHHHH
T ss_pred -ccccHHHHHH---HHHHHcCCCceEEeeccCcCcccccccccccccccceeeEeeeeeeec-cCCCCcCcHHHHHHHHh
Confidence 3344455544 34567778999999888766664221 1122 35566666 66677899999998876
Q ss_pred cCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCC-CCCCCCCCCchHHHHHHHHhcCcEEEEecCc
Q psy14428 306 AMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYL-GLTSGDFDKDAFSLRYFAKEVGQLCLAQSFS 384 (583)
Q Consensus 306 ~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~-~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~S 384 (583)
+ .++++|+..--.+|- .+ +++++.++|.+-|.+++.|-++. .|.-.+.. +.|+ + .. -|+..|.-
T Consensus 174 ~--~kPklIi~G~S~y~r--~~---d~~~~reIad~vga~l~~D~aH~aGLIA~g~~--~sP~----~-~a-Dvvt~tTH 238 (463)
T d2a7va1 174 L--FRPRLIIAGTSAYAR--LI---DYARMREVCDEVKAHLLADMAHISGLVAAKVI--PSPF----K-HA-DIVTTTTH 238 (463)
T ss_dssp H--HCCSEEEECCSSCCS--CC---CHHHHHHHHHHTTCEEEEECGGGHHHHHTTSS--CCGG----G-TC-SEEEEESS
T ss_pred h--cCCceEEeccccccc--cc---CHHHHHHHhhcccceEEechhhhhHHhhhhhh--cChh----h-hh-hhhhchhh
Confidence 4 356677765544443 23 35666777888899999999963 33333311 1122 1 12 36677889
Q ss_pred ccccccCccceEEEE
Q psy14428 385 KNMGLYGERVGTFSV 399 (583)
Q Consensus 385 K~~~l~GlRiG~lv~ 399 (583)
|+| +|=|-|.+++
T Consensus 239 KTl--rGPrgGiIl~ 251 (463)
T d2a7va1 239 KTL--RGARSGLIFY 251 (463)
T ss_dssp GGG--CSCSCEEEEE
T ss_pred hhh--cCCCceEEEE
Confidence 998 7999999888
|
| >d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=97.64 E-value=0.0012 Score=66.78 Aligned_cols=208 Identities=16% Similarity=0.103 Sum_probs=124.2
Q ss_pred CCccccCCccccCCCCCCCCChHHHHHHHHHhccCCCCCCC------CCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEe
Q psy14428 163 PKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYA------NIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQ 236 (583)
Q Consensus 163 ~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~~~~Y~------~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~ 236 (583)
...|+|-..+.- .++.+.+++...+.+....+|+ -..-..++.....+...+-++.+-+.. -+=||
T Consensus 31 ~~~l~LIaSEN~-------~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~~~~~-~anVq 102 (470)
T d1rv3a_ 31 RVGLELIASENF-------ASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCW-GVNVQ 102 (470)
T ss_dssp HSSEECCTTCCC-------CCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTE-EEECC
T ss_pred HcCceEecCCCc-------CCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhCCChhhc-ccccc
Confidence 355666655542 5588988887777553233332 222234444434344444343321111 12234
Q ss_pred cCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHH----------HhhcCCeEEEEecccCCCCCCChhhHHHHHHc
Q psy14428 237 GISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRF----------CTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKA 306 (583)
Q Consensus 237 t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~----------~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~ 306 (583)
...|+.|...+ +..+++|||+|+..++.-.++..- +.....+.+.+++ |++++.+|.+.+++..++
T Consensus 103 p~SGs~An~av---~~all~pgD~im~~~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~v-~~~~~~IDyd~l~~~a~~ 178 (470)
T d1rv3a_ 103 PYSGSPANFAV---YTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKV-NPDTGYIDYDRLEENARL 178 (470)
T ss_dssp CSSHHHHHHHH---HHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECB-CTTTCSBCHHHHHHHHHH
T ss_pred ccCCccHHHHH---HHHhcCCCCeEeeeccccCCcccccccccCCCcccccceeEeeEEEE-ecccCcccHHHHHHHHHh
Confidence 55555565553 455777799999988765544321 1112357888988 777788999999988764
Q ss_pred CCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCC-CCCCCCCCCchHHHHHHHHhcCcEEEEecCcc
Q psy14428 307 MPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYL-GLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSK 385 (583)
Q Consensus 307 ~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~-~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK 385 (583)
.++++|+..--.+|- .+ +++++.++|.+-+.+|+.|-++. +|.-.+.. +.|+ + +. -|+..|.-|
T Consensus 179 --~kPklIi~G~S~y~r--~~---d~~~~reIad~vga~l~~D~aH~aGLIA~g~~--~sPl----~-~a-Dvvt~tTHK 243 (470)
T d1rv3a_ 179 --FHPKLIIAGTSCYSR--NL---DYGRLRKIADENGAYLMADMAHISGLVVAGVV--PSPF----E-HC-HVVTTTTHK 243 (470)
T ss_dssp --HCCSEEEECCSSCCS--CC---CHHHHHHHHHHTTCEEEEECTTTHHHHHHTSS--CCGG----G-TC-SEEEEESSG
T ss_pred --hCcceEeechhhccc--cC---CHHHHHHHHhccCCeEEecchhhhhhcccccc--CChh----h-ee-eeeeeehhh
Confidence 355677765545443 23 35666777889999999999973 23222211 1122 1 12 377889999
Q ss_pred cccccCccceEEEE
Q psy14428 386 NMGLYGERVGTFSV 399 (583)
Q Consensus 386 ~~~l~GlRiG~lv~ 399 (583)
+| +|=|-|.+++
T Consensus 244 tl--rGPrgGiI~~ 255 (470)
T d1rv3a_ 244 TL--RGCRAGMIFY 255 (470)
T ss_dssp GG--CCCSCEEEEE
T ss_pred hc--cCCcceEEEE
Confidence 98 7999999988
|
| >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.59 E-value=0.00064 Score=69.89 Aligned_cols=253 Identities=11% Similarity=-0.013 Sum_probs=130.5
Q ss_pred CCCCccccCCccccCCCCCCCCChHHHHHHHHHhccCC--CCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecC
Q psy14428 161 PHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNL--DHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGI 238 (583)
Q Consensus 161 ~~~~~i~l~~g~~~~~~~~p~~~~~v~~a~~~~~~~~~--~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~ 238 (583)
.+...+|+..|.+....|.- .+.|.+++.+.++... ............+.+.+++.+..... -.-++++. ++
T Consensus 51 dG~~ylD~~~g~~~~~lGh~--~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~~a~~lae~l~~~~~--~~~~~v~f--~~ 124 (461)
T d1ohwa_ 51 DGNRMLDLYSQISSIPIGYS--HPALVKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVAP--KGMSQLIT--MA 124 (461)
T ss_dssp TSCEEEESSHHHHTCSSCBT--CHHHHHHHHCGGGHHHHHCCCCTTTSCBTTHHHHHHHTGGGGCC--TTCCEEEE--ES
T ss_pred CCCEEEEcccCHHHHhhcCC--cHHHHHHHHHHHhhhhhcccccccccchHHHHHHHHHHHHhhhc--cCcceeee--ec
Confidence 45567898877776666643 3677777765543210 00011111223455666666543221 13457888 99
Q ss_pred CchhHHHHHHHHHHHh-------------------------CCCCCEEEEcCCCChhhHHHHhh-cCCe-----------
Q psy14428 239 SGSGSLRVGTAFLERF-------------------------YPGVKTVYFPTPTWNGHVRFCTD-SRLN----------- 281 (583)
Q Consensus 239 G~~~al~l~~~~l~~~-------------------------~~~gd~Vlv~~P~y~~~~~~~~~-~G~~----------- 281 (583)
+|++|.+.+..+.+.. ..+...|+...-+|.+....... .|-+
T Consensus 125 sGseAve~Aik~Ar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~~~~syHG~t~~a~s~tg~~~~~~~~~~~~~ 204 (461)
T d1ohwa_ 125 CGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFD 204 (461)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHTCCSCHHHHTTCCCCC
T ss_pred chhhhhHHHHHHHHHHhhhcccCcccccchhhhhhhhccccCCCCceEEEecCCcCCCCcccccccCCcccccccccccC
Confidence 9999999875544321 12234688888888764322222 2211
Q ss_pred EEEEecccCCC-C-----------CCChhhHHHHHH---cCCCCcEEEEeCCCCCCCC-CCCCHHHHHHHHHHHHhcCeE
Q psy14428 282 VGAYRYFDNKT-N-----------GLDFAGMMEDIK---AMPERSILFLQTSSHNPTG-VDLSEDQWRQLAVVVKQRHLY 345 (583)
Q Consensus 282 ~~~v~~~d~~~-~-----------g~d~~~l~~~l~---~~~~~~~~i~i~~p~NPTG-~~~s~~~~~~l~~~a~~~~i~ 345 (583)
....+...... . ..+++.+++.+. .......++++-.-+.-.| ...+++-+++|.++|++||++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPi~g~~G~~~~~~~fl~~lr~lc~~~gil 284 (461)
T d1ohwa_ 205 WPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCA 284 (461)
T ss_dssp CCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCE
T ss_pred CcccccccccccccccccccchhhhhhHHHHHHHHHHHHhCCCccceeeeccccccccccCchhhHHHHHHHHHHhhCcc
Confidence 00011100000 0 001233333332 2234455555544444445 457899999999999999999
Q ss_pred EEEeccCCCCCCCCCCCchHHHHHHH-HhcCcEEEEecCcccccccCccceEEEEEcCCchhHHHHHHHHHHHHhccccC
Q psy14428 346 PFFDMAYLGLTSGDFDKDAFSLRYFA-KEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSN 424 (583)
Q Consensus 346 iI~De~Y~~l~~~~~~~~~~~~~~~~-~~~~~vi~i~S~SK~~~l~GlRiG~lv~~~p~~~~~~~li~~l~~~~~~~~~~ 424 (583)
+|.||+...|.-.+. ......+. +....++ +++|.++ . |+... . .++...........++
T Consensus 285 lI~DEV~tG~gRtG~---~~~~e~~gi~~~PDiv---~~gK~l~-~----g~~~~--~------~~~~~~~~~~~~~T~~ 345 (461)
T d1ohwa_ 285 FLVDEVQTGGGSTGK---FWAHEHWGLDDPADVM---TFSKKMM-T----GGFFH--K------EEFRPNAPYRIFNTWL 345 (461)
T ss_dssp EEEECTTTCSSTTSS---SSGGGGGCCSSCCSEE---EECGGGS-S----EEEEE--C------GGGSCSSTTSSCCSCS
T ss_pred eeccccccccccccc---cccccccccccCchhh---hhhhccc-c----ccccc--c------cccccccccccccccc
Confidence 999999998864441 11111110 0012333 6789775 2 55555 2 2222211112223445
Q ss_pred CChHHHHHHHHHhC
Q psy14428 425 PPIHGARIVTEILS 438 (583)
Q Consensus 425 ~s~~~q~~~~~~l~ 438 (583)
.++++..++.+.|+
T Consensus 346 g~p~~~aaa~a~l~ 359 (461)
T d1ohwa_ 346 GDPSKNLLLAEVIN 359 (461)
T ss_dssp SCHHHHHHHHHHHH
T ss_pred cccccchhhcccch
Confidence 56677666665554
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Probab=97.56 E-value=2e-05 Score=80.32 Aligned_cols=74 Identities=38% Similarity=0.828 Sum_probs=65.5
Q ss_pred cceecccchhHHHHHHHHHHhhc-----CCCeEEecCCCCcCchhhhhhcCCCc-eeeeeccCCCCcccchhhhHHHHHh
Q psy14428 2 AIVQGISGSGSLRVGTAFLERFY-----PGVKTVYFPTPTWNGHVRFCTDSRLN-VGAYRYFDNKTNGLDFAGMMEDIKL 75 (583)
Q Consensus 2 ~~~q~~~~tg~~~~~~~~~~~~~-----~~~~~~~~~~p~w~n~~~~~~~~~~~-~~~y~~~~~~~~~~d~~~~~~~~~~ 75 (583)
+.+|+.++||+++.+..+|...+ |+ .+|++++|+|.+|..+++.+|.+ +..|.++|......||+.++++++.
T Consensus 101 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~pG-d~Vlv~~P~y~~y~~~~~~~G~~~v~~~~~~~~~~~~~d~~~~~~~~~~ 179 (412)
T d1ajsa_ 101 GGVQSLGGTGALRIGAEFLARWYNGTNNKD-TPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLEN 179 (412)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHHSSSSSCCC-SCEEEEESCCTHHHHHHHHTTCSCEEEEECEETTTTEECHHHHHHHHHH
T ss_pred eeecccchhhHHHHHHHHHHHHhhhcCCCC-CEEEEeCCcchhhHHHHHHcCCeEEEeecccccccccccHHHHHHHHHh
Confidence 46899999999999999998853 44 67999999999999999999986 7888999999999999999888776
Q ss_pred h
Q psy14428 76 A 76 (583)
Q Consensus 76 a 76 (583)
+
T Consensus 180 ~ 180 (412)
T d1ajsa_ 180 A 180 (412)
T ss_dssp S
T ss_pred c
Confidence 3
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Probab=97.55 E-value=1.4e-05 Score=81.16 Aligned_cols=65 Identities=32% Similarity=0.619 Sum_probs=56.7
Q ss_pred hhhhcccccchhhhHHHHHHHhCCCCcEEEeCCCCCCChHhHhhhcCCcccccccccCCCCCcccc
Q psy14428 76 AIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFA 141 (583)
Q Consensus 76 a~~q~~~gtgal~~~~~~~~~~~~~~~~~~i~~ptw~nh~~if~~~g~~~~~y~Y~~~~~~~~d~~ 141 (583)
..++|.||++++.++..++....++ ..|+|++|+|++|..+++.+|.++..|++++.+....++.
T Consensus 96 ~~~~~~~~~~~~~l~~~~l~~~~~g-d~Vlvp~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~~~ 160 (396)
T d2q7wa1 96 RTAQTPGGTGALRVAADFLAKNTSV-KRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFD 160 (396)
T ss_dssp EEEEESHHHHHHHHHHHHHHHHSCC-CEEEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEECHH
T ss_pred eeeccchHHHHHHHHHHHHhhcccc-eEEEEecCCCccchHHHHHcCCeeEecccccccccccccc
Confidence 3567889999999999999888886 8999999999999999999999999999988877644443
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Probab=97.51 E-value=2.6e-05 Score=79.21 Aligned_cols=77 Identities=51% Similarity=0.906 Sum_probs=68.4
Q ss_pred CcceecccchhHHHHHHHHHHhhcCCCeEEecCCCCcCchhhhhhcCCCceeeeeccCCCCcccchhhhHHHHHhhh
Q psy14428 1 LAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKLAI 77 (583)
Q Consensus 1 ~~~~q~~~~tg~~~~~~~~~~~~~~~~~~~~~~~p~w~n~~~~~~~~~~~~~~y~~~~~~~~~~d~~~~~~~~~~a~ 77 (583)
|+++|+.+|+|+++....++..+.....+|++++|+|.+|..+++.+|.++..|++++......|++.+.+++..++
T Consensus 97 i~~~~~~~~~g~~~~~~~~~~~l~~pGd~Vlv~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (401)
T d7aata_ 97 YVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIP 173 (401)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTSC
T ss_pred eEEeccchHHHHHHHHHHhhHhhcCCCceEEEecCCCcchhhHHHHcCCeEEEEeccccccccccHHHHHHHHhcCC
Confidence 35789999999999999988887755479999999999999999999999999999999999999999888877653
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Probab=96.96 E-value=0.00024 Score=72.11 Aligned_cols=74 Identities=35% Similarity=0.782 Sum_probs=65.6
Q ss_pred cceecccchhHHHHHHHHHHhhcCCCeEEecCCCCcCchhhhhhcCCCceeeeeccCCCCcccchhhhHHHHHhh
Q psy14428 2 AIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKLA 76 (583)
Q Consensus 2 ~~~q~~~~tg~~~~~~~~~~~~~~~~~~~~~~~p~w~n~~~~~~~~~~~~~~y~~~~~~~~~~d~~~~~~~~~~a 76 (583)
.++|+.+|++++.+++.++...-++ ..|++|+|+|.+|..+++.+|.++..|++++.....+|++.+.+++...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~g-d~Vlip~P~~~~y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (412)
T d1yaaa_ 100 ISVQSLSGTGALHISAKFFSKFFPD-KLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLDLNGFLNAIQKA 173 (412)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHHCTT-CCEEEEESCCTTHHHHHHTTTCCEEEEECEETTTTEECHHHHHHHHHHS
T ss_pred eEEecccchhHHHHHHHHHhccCCC-CEEecccccCchhHHHHHHcCCceecccccccccccccchhhhcccccC
Confidence 5788999999999999888776666 6899999999999999999999999999999998899988877776654
|
| >d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
Probab=96.89 E-value=0.00032 Score=69.48 Aligned_cols=178 Identities=12% Similarity=0.020 Sum_probs=100.6
Q ss_pred CChHHHHHHHHHhccC--CCCC--CCC--CCC----CHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHH
Q psy14428 182 VLPSVKEAERRIYEKN--LDHE--YAN--IGG----DAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFL 251 (583)
Q Consensus 182 ~~~~v~~a~~~~~~~~--~~~~--Y~~--~~G----~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l 251 (583)
.++.|.+++.+.+.+. ...+ +-. ..- +.+.|+.++++++ .+ +..+|++ ++|+..+...+ .+
T Consensus 14 vp~~V~eam~~~~~~~~~~~~~~~~~sHRs~ef~~~~~~~r~~l~~l~~----~~-~~~~i~~--~~gs~t~~~ea--~~ 84 (361)
T d2c0ra1 14 LPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLG----NP-TGYKVLF--IQGGASTQFAM--IP 84 (361)
T ss_dssp CCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTT----CC-SSEEEEE--ESSHHHHHHHH--HH
T ss_pred CCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhC----CC-CCCEEEE--ECCCchHHHHH--HH
Confidence 6789999887755320 0000 000 111 1334444544443 22 2346777 77766555443 34
Q ss_pred HHhCCCCCEEEEcCCC-Ch-hhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCH
Q psy14428 252 ERFYPGVKTVYFPTPT-WN-GHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSE 329 (583)
Q Consensus 252 ~~~~~~gd~Vlv~~P~-y~-~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~ 329 (583)
..+..+|+.+++..-. |. .+..+.+..|..+..+.. +. ...++++.+++.+ ...+...+ +|.||...+.
T Consensus 85 ~~l~~~~~~~l~~~~g~~~~~~~~~~~~~g~~~~~~~~-~~-~~~~~~~~~~~~~---~~~~~~~v----~~~tg~~~~~ 155 (361)
T d2c0ra1 85 MNFLKEGQTANYVMTGSWASKALKEAKLIGDTHVAASS-EA-SNYMTLPKLQEIQ---LQDNAAYL----HLTSNETIEG 155 (361)
T ss_dssp HHHCCTTCEEEEEECSHHHHHHHHHHHHHSCEEEEEEC-GG-GTTCSCCCGGGCC---CCTTEEEE----EEESEETTTT
T ss_pred hccccCCCceEEEeechhhhhhhhhhhhcCceeeeecc-cc-ccccchhhhhhhc---ccCcceEE----EEecccceec
Confidence 4466668888755433 32 345567778988888776 32 2345666655443 22333222 5678888775
Q ss_pred HHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCc
Q psy14428 330 DQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGE 392 (583)
Q Consensus 330 ~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~Gl 392 (583)
. ++.++|+++|+++++|.+-+--... -+ .+.. . +.+.|.+|.++.+|.
T Consensus 156 ~---~i~~~~~~~~al~~vDavss~g~~~---id-------~~~~-d-i~~~s~~k~~~~~~~ 203 (361)
T d2c0ra1 156 A---QFKAFPDTGSVPLIGDMSSDILSRP---FD-------LNQF-G-LVYAGAQKNLGPSGV 203 (361)
T ss_dssp E---ECSSCCCCTTSCEEEECTTTTTSSC---CC-------GGGC-S-EEEEETTTTTCCSSC
T ss_pred c---eEEEeeccCCceEEEEeeccccccc---cc-------cccc-e-eEEEecccccccccC
Confidence 5 4567899999999999996443321 01 1222 2 345577999998874
|
| >d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Escherichia coli [TaxId: 562]
Probab=96.43 E-value=0.00057 Score=67.06 Aligned_cols=186 Identities=10% Similarity=-0.084 Sum_probs=105.6
Q ss_pred CChHHHHHHHHHhccCCCCCCC----CCCC------CHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHH
Q psy14428 182 VLPSVKEAERRIYEKNLDHEYA----NIGG------DAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFL 251 (583)
Q Consensus 182 ~~~~v~~a~~~~~~~~~~~~Y~----~~~G------~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l 251 (583)
.|+.|.+++.+.+.+....+.+ ...+ +.+.|+.|+++++.. +++.|++ ++|++.+...+ ..
T Consensus 12 ~p~~Vl~a~~~~~~~~~~~~~~~~~~sHRs~ef~~l~~~~r~~l~~l~~~~-----~~~~v~~--~~gs~t~~~~a--~~ 82 (360)
T d1bjna_ 12 LPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVP-----SNYKVLF--CHGGGRGQFAA--VP 82 (360)
T ss_dssp CCHHHHHHHHHTSSSGGGSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCC-----TTEEEEE--ESSHHHHHHHH--HH
T ss_pred CCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCC-----CCCEEEE--ECCchHHHHhh--hh
Confidence 6789999888765431000000 0011 467777888888632 2346888 88887777665 34
Q ss_pred HHhCCCCCEEEEcCCCChhh--HHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCH
Q psy14428 252 ERFYPGVKTVYFPTPTWNGH--VRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSE 329 (583)
Q Consensus 252 ~~~~~~gd~Vlv~~P~y~~~--~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~ 329 (583)
..+.++++.+++..-.+... ....+..|..++.+.. +.+ ...+.+.+++.+ ..+++++++...+|-||.....
T Consensus 83 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~---~~~~~~v~v~~~~~~t~~~~~~ 157 (360)
T d1bjna_ 83 LNILGDKTTADYVDAGYWAASAIKEAKKYCTPNVFDAK-VTV-DGLRAVKPMREW---QLSDNAAYMHYCPNETIDGIAI 157 (360)
T ss_dssp HHHCTTCCEEEEEESSHHHHHHHHHHTTTSEEEEEECE-EEE-TTEEEECCGGGC---CCCSSCSCEEECSEETTTTEEC
T ss_pred hcccccccccceecccchhhhhHHHHhhcCccceeecc-ccC-CCcchhhhhhhh---ccCCceeEEEecccccccCccc
Confidence 45666688888776664432 3445555665555544 221 223333333322 4555666666678888877654
Q ss_pred HHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccccccCccceEEEE
Q psy14428 330 DQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSV 399 (583)
Q Consensus 330 ~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~ 399 (583)
... .+..+++.++.|-+-+....+= +..+--+++.|.+|.++.|+- .|.++.
T Consensus 158 ~~i-----~~~~~~~~v~vDa~~~~~~~~v------------d~~~~dv~~~ss~k~~~~~~~-~~~~~~ 209 (360)
T d1bjna_ 158 DET-----PDFGADVVVAADFSSTILSRPI------------DVSRYGVIYAGAQKNIGPAGL-TIVIVR 209 (360)
T ss_dssp CCC-----CCCCTTCCEEEECTTTTTSSCC------------CGGGCSEEEEETTTTTSSTTC-EEEEEE
T ss_pred cce-----ecccccceeeeeeeccccceee------------eeccceeEEEEcccccccCCC-ceeEee
Confidence 332 2456788899988765443321 111234577788888875543 344444
|
| >d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus alcalophilus [TaxId: 1445]
Probab=95.85 E-value=0.0049 Score=60.27 Aligned_cols=156 Identities=11% Similarity=-0.061 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHhCCCCCCCCCC-CeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCCh--hhHHHHhhcCCeEEEE
Q psy14428 209 AKFCKLAAQLAYGEDFPAFKDN-RLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWN--GHVRFCTDSRLNVGAY 285 (583)
Q Consensus 209 ~~Lr~aia~~~~~~~g~~~~~~-~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~--~~~~~~~~~G~~~~~v 285 (583)
.+.|+.++++++. +.+ .|++ ++|++++...+ ....+.++++.|++..-... .+...++..+...+..
T Consensus 51 ~~~r~~l~~l~~~------~~~~~i~~--~~gt~~~~~~~--~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~ 120 (360)
T d1w23a_ 51 EQAQNLLRELLQI------PNDYQILF--LQGGASLQFTM--LPMNLLTKGTIGNYVLTGSWSEKALKEAKLLGETHIAA 120 (360)
T ss_dssp HHHHHHHHHHHTC------CTTEEEEE--ESSHHHHHHHH--HHHHHCCTTCEEEEEECSHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHhCC------CCCCEEEE--eCCcHHHHHHH--HHhhhcccCcccceeeccchhhhhHHHHHHhhhcceee
Confidence 5577888888853 233 5777 77777776655 33345566888887765532 3344555566666555
Q ss_pred ecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEeccCCCCCCCCCCCchH
Q psy14428 286 RYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAF 365 (583)
Q Consensus 286 ~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~ 365 (583)
...+. .....+.+.+.. ...+...+ .|-||...+.+ +|.++|+++|+++|.|-+-+-...+= +
T Consensus 121 ~~~~~--~~~~~~~~~~~~---~~~~~~~~----~~~tg~~~~~~---~i~~~~~~~g~l~ivDavqs~g~~~i---d-- 183 (360)
T d1w23a_ 121 STKAN--SYQSIPDFSEFQ---LNENDAYL----HITSNNTIYGT---QYQNFPEINHAPLIADMSSDILSRPL---K-- 183 (360)
T ss_dssp ECGGG--TSCSCCCGGGCC---CCTTEEEE----EEESEETTTTE---ECSSCCCCCSSCEEEECTTTTTSSCC---C--
T ss_pred ccccc--cccchhhhhhcc---ccccccee----EecCCccccce---eeeeccccceeeEEeecccccccccc---c--
Confidence 54221 122333332221 22222222 35578777654 55778999999999999976444321 1
Q ss_pred HHHHHHHhcCcEEEEecCcccccccCccceEEEE
Q psy14428 366 SLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSV 399 (583)
Q Consensus 366 ~~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~lv~ 399 (583)
.+.. -+.+.|+||..+++|. .|+++.
T Consensus 184 -----~~~~--~vd~~~~~~~k~~~~~-~~~~~~ 209 (360)
T d1w23a_ 184 -----VNQF--GMIYAGAQKNLGPSGV-TVVIVK 209 (360)
T ss_dssp -----GGGC--SEEEEETTTTTSCTTC-EEEEEE
T ss_pred -----cccc--cceEEeeccccccCCc-ceeeEe
Confidence 1222 2455577888876663 445444
|
| >d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase (decarboxylating) subunit 1 species: Thermus thermophilus [TaxId: 274]
Probab=95.36 E-value=0.086 Score=52.71 Aligned_cols=125 Identities=5% Similarity=-0.191 Sum_probs=79.7
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCCCeEEEecCCchhHHHHHHHHHHHhCCCCCEEEEcCCCChhhHHH----HhhcCC
Q psy14428 205 IGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRF----CTDSRL 280 (583)
Q Consensus 205 ~~G~~~Lr~aia~~~~~~~g~~~~~~~I~i~~t~G~~~al~l~~~~l~~~~~~gd~Vlv~~P~y~~~~~~----~~~~G~ 280 (583)
.+|..++--.+..++.+--|.++. +.-. -.|+++...-+... ..... .+++++..-.++.+..+ ++..|+
T Consensus 103 sQG~Lq~l~e~q~~l~eltGmd~~--n~s~--~~ga~a~~~~~~~~-~~~~~-~~~~~v~~~~~p~~~~v~~t~a~~~g~ 176 (437)
T d1wyua1 103 SQGVLQATFEYQTMIAELAGLEIA--NASM--YDGATALAEGVLLA-LRETG-RMGVLVSQGVHPEYRAVLRAYLEAVGA 176 (437)
T ss_dssp CHHHHHHHHHHHHHHHHHHTSSEE--CSCB--SSHHHHHHHHHHHH-HHHHT-CCEEEEETTSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHhhCCCcc--ccCc--hHHHHHHHHHHHHH-Hhhhc-ccccccccccChHHhhhhhhhccccee
Confidence 577665555555555544443322 2233 56777776655322 23333 57889988888776554 456799
Q ss_pred eEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCeEEEEe
Q psy14428 281 NVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFD 349 (583)
Q Consensus 281 ~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~a~~~~i~iI~D 349 (583)
+++.+|. ++ .+.+.+. ..+.+..+++.|||. .|..- +++++.+++.+.|.+++.|
T Consensus 177 ~vv~v~~-~~--~~~~~~~-------~~~~~Aavmi~~Pnt-~G~~e---d~~~i~~~~h~~G~l~~~~ 231 (437)
T d1wyua1 177 KLLTLPL-EG--GRTPLPE-------VGEEVGAVVVQNPNF-LGALE---DLGPFAEAAHGAGALFVAV 231 (437)
T ss_dssp EEEEECC-BT--TBCCCCC-------CCTTEEEEEEESSCT-TSBCC---CHHHHHHHHHHTTCEEEEE
T ss_pred eEEeeec-cc--ccchhhh-------hccceeEEEEccccc-ccccc---chHHHHHHhhhccceEEee
Confidence 9999988 43 2333322 256788899999954 67663 4788899999999876655
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Probab=90.96 E-value=0.12 Score=51.66 Aligned_cols=59 Identities=20% Similarity=0.393 Sum_probs=42.9
Q ss_pred hhhHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccceeecCCCh
Q psy14428 471 GARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSA 536 (583)
Q Consensus 471 g~~i~~~~l~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~pg~~~~~~~~~g~f~~~~l~~ 536 (583)
....+...+.+... +.+++++++.++.++|+.+.+.|++.+ +.+..+++|+|+|++++.
T Consensus 307 ~~~~~~a~l~~~~~---~~~~~~~~~~~~~~~~~~l~~~L~~~g----i~~~~p~gg~f~w~~l~~ 365 (431)
T d1m7ya_ 307 TQHLLSAMLSDKKL---TKNYIAENHKRLKQRQKKLVSGLQKSG----ISCLNGNAGLFCWVDMRH 365 (431)
T ss_dssp HHHHHHHHHHCHHH---HHHHHHHHHHHHHHHHHHHHHHHHTTT----CEECCCCSSSEEEEECGG
T ss_pred ccchhhhhhccchh---hhhhhhhhhhhhhhhhhhhhhhhhcCC----cEEecCCceeEEEEECcc
Confidence 33444444444333 334578889999999999999998765 567889999999988754
|
| >d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase subunit 2 (P-protein) species: Thermus thermophilus [TaxId: 274]
Probab=86.84 E-value=8.8 Score=37.80 Aligned_cols=123 Identities=11% Similarity=0.102 Sum_probs=70.8
Q ss_pred EEEEcCCCC-hhhHHHHhhcCCeEEEEecccCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHH
Q psy14428 260 TVYFPTPTW-NGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVV 338 (583)
Q Consensus 260 ~Vlv~~P~y-~~~~~~~~~~G~~~~~v~~~d~~~~g~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~s~~~~~~l~~~ 338 (583)
.+.+..+.+ ..........+..++.++. +. ....+.+.+.... ...+..+++.+|+++-+..- +.+++.++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~---~~~~a~v~v~~p~~~g~~e~---~~~~~~~~ 227 (471)
T d1wyub1 156 RVVLVPDSAHGSNPATASMAGYQVREIPS-GP-EGEVDLEALKREL---GPHVAALMLTNPNTLGLFER---RILEISRL 227 (471)
T ss_dssp CEEEEETTSCTHHHHHHHHTTCEEEEECB-CT-TSSBCHHHHHHHC---STTEEEEEECSSCTTSCCCT---THHHHHHH
T ss_pred ccccCCcccccceeeeeecccceeecccc-cc-cccccchhhhhhh---hccccceeeccCCCcccccc---hhhhhHHH
Confidence 344455544 4445555667778888876 33 3456777666554 56677888888888765433 34456777
Q ss_pred HHhcCeEEEEeccCCCCCCCCCCCchHHHHHHHHhcCcEEEEecCcccc----cccCccceEEEE
Q psy14428 339 VKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNM----GLYGERVGTFSV 399 (583)
Q Consensus 339 a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~----~l~GlRiG~lv~ 399 (583)
+.+.+..++.|-+-......- .++ .+....+++++ ..+.| +..|--+|++.+
T Consensus 228 ~h~~g~~~~~~~~~~~~~~~l--~~p------~~~g~div~vg-~~q~~G~P~~~GGP~~G~~a~ 283 (471)
T d1wyub1 228 CKEAGVQLYYDGANLNAIMGW--ARP------GDMGFDVVHLN-LHKTFTVPHGGGGPGSGPVGV 283 (471)
T ss_dssp HHHHTCEEEEEGGGGGGTTTT--CCH------HHHTCSEEECC-TTTTTCCCCTTSCCCCCCEEE
T ss_pred HHhccccccccccchhhhhhc--ccc------Ccccccccccc-cccccccccccccccccceee
Confidence 777777777765543332211 011 12334455443 34444 334666789888
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Probab=85.57 E-value=0.3 Score=47.03 Aligned_cols=67 Identities=13% Similarity=0.024 Sum_probs=48.2
Q ss_pred eecccchhHHHHHHHHHHhhcCCCeEEecCCCCcCchhhhhhcCCCceeeeeccC-CCCcccchhhhHHHH
Q psy14428 4 VQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFD-NKTNGLDFAGMMEDI 73 (583)
Q Consensus 4 ~q~~~~tg~~~~~~~~~~~~~~~~~~~~~~~p~w~n~~~~~~~~~~~~~~y~~~~-~~~~~~d~~~~~~~~ 73 (583)
+-|=++|.+|.....-|.+ ++ .+|.+++|+|.+|..+++..|..+..++... .....+|++.+.+.+
T Consensus 62 ~it~G~~~~l~~~~~~l~~--~g-d~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~~~~~~ 129 (361)
T d1d2fa_ 62 VYGPSVIYMVSELIRQWSE--TG-EGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVL 129 (361)
T ss_dssp EEESCHHHHHHHHHHHSSC--TT-CEEEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHH
T ss_pred EEeCCHHHHHHHHhhhccc--cc-cccccccccccchhHHHHhhcceEEeecccccccccccccccchhhc
Confidence 3455677777665554433 55 5799999999999999999999877776554 334458887766555
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=80.74 E-value=0.27 Score=47.77 Aligned_cols=64 Identities=11% Similarity=0.142 Sum_probs=48.8
Q ss_pred cccchhHHHHHHHHHHhhcCCCeEEecCCCCcCchhhhhhcCCCceeeeeccCCCCcccchhhhHHH
Q psy14428 6 GISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMED 72 (583)
Q Consensus 6 ~~~~tg~~~~~~~~~~~~~~~~~~~~~~~p~w~n~~~~~~~~~~~~~~y~~~~~~~~~~d~~~~~~~ 72 (583)
|-++++++.+...-|.+ ++ .+|.+++|+|.++..+++..|.++..++..+...-++|++.+.+.
T Consensus 92 t~G~~~~l~~~~~~l~~--~g-d~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~ 155 (388)
T d1gdea_ 92 LLGANQAFLMGLSAFLK--DG-EEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKY 155 (388)
T ss_dssp ESSTTHHHHHHHTTTCC--TT-CEEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCHHHHHHH
T ss_pred ccCcchHHHHHHHHhcC--CC-CEEEECCCCcHHHHHHHHHcCCEEEEeecccccCCCCCHHHHHHh
Confidence 44567777776554433 55 689999999999999999999999999876665567888765443
|