Psyllid ID: psy14432

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------19
Protein Sequence
MNTILSFHKLISNQRNVVKRFYKSSISLDKLYPNSSMLLKTPTPDQVKAPDGLKFNGVIPVKAPDGLKFNGVIPVVIPRFSYITEELDITYSRSSGPGGQHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELNKNRLNKDGYLIIKSDRTRSQQLNLADAMTTLRNMIWKAAKPAPQISEDTIDRIRIR
Secondary Structure (PSIPRED)
cccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccccccccccccccEEEEEEEccccccccHHHHHHHHHHHccccccccEEEEEEcccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHcHHHcccccEcccccHHHcccccccEcccccccccccccccccccccccccccHHHccccccEEccccEccHccEEEEEEEcccccccccccEccEEEEEEEccccccccHHHHHHHHHHHccccccccEEEEEccccccHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHcc
Coil and Loop (DISEMBL)
MNTILSFHKLISNQRNVVKRFYKSSisldklypnssmllktptpdqvkapdglkfngvipvkapdglkfngvipvviprfsyiteelditysrssgpggqhvnsvsTKVDIRFKVNAANWLNEDVKKQLIELNKNrlnkdgyliiksdrtrsQQLNLADAMTTLRNMIWKaakpapqisedtidririr
Flexible Loop (DISEMBL)
MNTILSFHKLISNQRNVVKRFYKSSISLDKLYPNSSMLLKTPTPDQVKAPDGLKFNGVIPvkapdglkfngvIPVVIPRFSYITEELDITysrssgpggqhvNSVSTKVDIRFKVNaanwlnedvKKQLIELnknrlnkdgyliiksdrtrsqqLNLADAMTTLRNMIwkaakpapqisedtidririr
Low Complexity Region (SEG)
MNTILSFHKLISNQRNVVKRFYKSSISLDKLYPNSSMLLKTPTPDQVKAPDGLKFNGVIPVKAPDGLKFNGVIPVVIPRFSYITEELDITYSRSSGPGGQHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELNKNRLNKDGYLIIKSDRTRSQQLNLADAMTTLRNMIWKAAKPAPQISEDTIDRIRIR
Disordered region (IsUnstruct)
***ILSFHKLISNQRNVVKRFYKSSISLDKLYP*****************DGLKFNGVIPVKAPDGLKFNGVIPVVIPRFSYITEELDITYS*********VNSVSTKVDIRFKVNAANWLNEDVKKQLIELNKNRLNKDGYLIIKSDRT**QQLNLADAMTTLRNMIWKA******************
Disordered Region (DISOPRED)
********************FYKSSISLDKLYPNSSML******************************FNGVIPVVIPRFSYITEELDITY*R***P**QHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELNKNRLNKDGYLIIKSDRTRSQQLNLADAMTTLRNMIW********************
Disordered Region (DISEMBL)
MNTILSFHKLISNQRNVVKRFYKSSISLDKLYPNSSMLLKTPTPDQVKAPDGLKFNGVIPVKAPDGLKFNGVIPVVIPRFSYITEELDITYS***********SVSTKVDIRFKVNAANWLNEDVKKQLIELNKNRLNKDGYLIIKSDRTRSQQLNLADAMTTLRNMIWKAAKPAPQISEDTIDRIRIR
Disordered Region (DISPRO)
*NTILSFHKLISNQRNVVKRFYKSSISLDKLYPNSSMLLKTPTPD**********NGVI****PD*LKFNGVIPVVIPRFSYITEELDITYSRSSGPGGQHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELNKNRLNKDGYLIIKSDRTRSQQLNLADAMTTLRNMIWKAA*****************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNTILSFHKLISNQRNVVKRFYKSSISLDKLYPNSSMLLKTPTPDQVKAPDGLKFNGVIPVKAPDGLKFNGVIPVVIPRFSYITEELDITYSRSSGPGGQHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELNKNRLNKDGYLIIKSDRTRSQQLNLADAMTTLRNMIWKAAKPAPQISEDTIDRIRIR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	189	2.2.26 [Sep-21-2011]
B5XAM2	191	Peptidyl-tRNA hydrolase I	N/A	N/A	0.513	0.507	0.5	3e-22
Q3T116	206	Peptidyl-tRNA hydrolase I	yes	N/A	0.783	0.718	0.350	2e-21
D2HD32	206	Peptidyl-tRNA hydrolase I	yes	N/A	0.740	0.679	0.349	2e-19
Q8R035	206	Peptidyl-tRNA hydrolase I	yes	N/A	0.783	0.718	0.333	1e-18
Q14197	206	Peptidyl-tRNA hydrolase I	yes	N/A	0.740	0.679	0.355	1e-18
P45388	137	Peptidyl-tRNA hydrolase O	yes	N/A	0.460	0.635	0.431	2e-12
P40711	140	Peptidyl-tRNA hydrolase Y	N/A	N/A	0.492	0.664	0.4	3e-11
Q9HDZ3	182	Meiotically up-regulated	yes	N/A	0.518	0.538	0.342	3e-05

>sp|B5XAM2|ICT1_SALSA Peptidyl-tRNA hydrolase ICT1, mitochondrial OS=Salmo salar GN=ict1 PE=2 SV=1

 Score =  104 bits (260), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 49/98 (50%), Positives = 72/98 (73%), Gaps = 1/98 (1%)

Query: 85  EELDITYSRSSGPGGQHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELNKNRLNKDGYLI 144
           + L ++YSRSSGPGGQHVN VSTK ++RF V  A+W+ EDV++++I  NKNR+NK G L+
Sbjct: 60  DRLTVSYSRSSGPGGQHVNKVSTKAEVRFHVYTADWIPEDVRQKIILNNKNRINKAGELL 119

Query: 145 IKSDRTRSQQLNLADAMTTLRNMIWKAA-KPAPQISED 181
           + S+++RSQQ N+ D +  + ++I KA  KP    +ED
Sbjct: 120 VTSEQSRSQQRNMGDCIQKISDIIAKATEKPHEPSAED 157

Essential peptidyl-tRNA hydrolase component of the mitochondrial large ribosomal subunit. Acts as a codon-independent translation release factor that has lost all stop codon specificity and directs the termination of translation in mitochondrion, possibly in case of abortive elongation. May be involved in the hydrolysis of peptidyl-tRNAs that have been prematurely terminated and thus in the recycling of stalled mitochondrial ribosomes.
Salmo salar (taxid: 8030)
EC: 3EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 9

>sp|Q3T116|ICT1_BOVIN Peptidyl-tRNA hydrolase ICT1, mitochondrial OS=Bos taurus GN=ICT1 PE=2 SV=1

 Score =  102 bits (253), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/177 (35%), Positives = 100/177 (56%), Gaps = 29/177 (16%)

Query: 14  QRNVVKRFYKSSISLDKLYPNSSMLLKTPTPDQVKAPDGLKFNGVIPVKAPDGLKFNGVI 73
            R V    ++S+ SLDKLYP S                G      +P  A  G   N  I
Sbjct: 31  HRQVEGTEFRSAYSLDKLYPESR---------------GADTAWRVPGDAKQG---NDDI 72

Query: 74  PVVIPRFSYITEELDITYSRSSGPGGQHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELN 133
           PV         + L I+Y RSSGPGGQ+VN V++K ++RF + +A+W+ E V++++   +
Sbjct: 73  PV---------DRLTISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIAEPVRQKMALTH 123

Query: 134 KNRLNKDGYLIIKSDRTRSQQLNLADAMTTLRNMIWKAAKPAPQISED--TIDRIRI 188
           KN++N+ G LI+ S+ +R Q  NLAD +  +R+MI +A++PA + S++   + ++RI
Sbjct: 124 KNKINRAGELILTSEYSRYQFRNLADCLQKIRDMIAEASQPATEPSKEDAALQKLRI 180

Essential peptidyl-tRNA hydrolase component of the mitochondrial large ribosomal subunit. Acts as a codon-independent translation release factor that has lost all stop codon specificity and directs the termination of translation in mitochondrion, possibly in case of abortive elongation. May be involved in the hydrolysis of peptidyl-tRNAs that have been prematurely terminated and thus in the recycling of stalled mitochondrial ribosomes.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

>sp|D2HD32|ICT1_AILME Peptidyl-tRNA hydrolase ICT1, mitochondrial OS=Ailuropoda melanoleuca GN=ICT1 PE=3 SV=1

 Score = 95.5 bits (236), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/169 (34%), Positives = 93/169 (55%), Gaps = 29/169 (17%)

Query: 22  YKSSISLDKLYPNSSMLLKTPTPDQVKAPDGLKFNGVIPVKAPDGLKFNGVIPVVIPRFS 81
           ++S  SLDKLYP S       +    K PD             D  + N  IP+      
Sbjct: 39  FQSIYSLDKLYPESR-----GSDTAWKVPD-------------DAQQTNKDIPL------ 74

Query: 82  YITEELDITYSRSSGPGGQHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELNKNRLNKDG 141
              + L I+Y RSSGPGGQ+VN V++K ++RF +  A W+ E V++++  ++KN++N+ G
Sbjct: 75  ---DRLTISYCRSSGPGGQNVNKVNSKAEVRFHLATAEWIAEPVRQKMAIMHKNKINRSG 131

Query: 142 YLIIKSDRTRSQQLNLADAMTTLRNMIWKAAKP--APQISEDTIDRIRI 188
            LI+ S+ +R Q  NLAD +  +R+MI +A++    P   +  + RIRI
Sbjct: 132 ELILTSECSRYQFRNLADCLQKIRDMIAEASQTPKEPSKEDAALHRIRI 180

Essential peptidyl-tRNA hydrolase component of the mitochondrial large ribosomal subunit. Acts as a codon-independent translation release factor that has lost all stop codon specificity and directs the termination of translation in mitochondrion, possibly in case of abortive elongation. May be involved in the hydrolysis of peptidyl-tRNAs that have been prematurely terminated and thus in the recycling of stalled mitochondrial ribosomes.

Ailuropoda melanoleuca (taxid: 9646)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

>sp|Q8R035|ICT1_MOUSE Peptidyl-tRNA hydrolase ICT1, mitochondrial OS=Mus musculus GN=Ict1 PE=1 SV=1

 Score = 92.8 bits (229), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/177 (33%), Positives = 95/177 (53%), Gaps = 29/177 (16%)

Query: 14  QRNVVKRFYKSSISLDKLYPNSSMLLKTPTPDQVKAPDGLKFNGVIPVKAPDGLKFNGVI 73
            R V    ++S  SLDKLYP S                G      +P  A     +   I
Sbjct: 31  HRQVDGTTFQSIYSLDKLYPES---------------KGADTAWKVPEHAKQASSY---I 72

Query: 74  PVVIPRFSYITEELDITYSRSSGPGGQHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELN 133
           P+         + L I+Y RSSGPGGQ+VN V++K ++RF + +A+W+ E V++++   +
Sbjct: 73  PL---------DRLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIEEPVRQKIALTH 123

Query: 134 KNRLNKDGYLIIKSDRTRSQQLNLADAMTTLRNMIWKAAK-PAPQISEDT-IDRIRI 188
           KN++NK G L++ S+ +R Q  NLA+ +  +R+MI +A++ P     ED  + R+RI
Sbjct: 124 KNKINKAGELVLTSESSRYQFRNLAECLQKIRDMIAEASQVPKEPSKEDARLQRLRI 180

Essential peptidyl-tRNA hydrolase component of the mitochondrial large ribosomal subunit. Acts as a codon-independent translation release factor that has lost all stop codon specificity and directs the termination of translation in mitochondrion, possibly in case of abortive elongation. May be involved in the hydrolysis of peptidyl-tRNAs that have been prematurely terminated and thus in the recycling of stalled mitochondrial ribosomes.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

>sp|Q14197|ICT1_HUMAN Peptidyl-tRNA hydrolase ICT1, mitochondrial OS=Homo sapiens GN=ICT1 PE=1 SV=1

 Score = 92.4 bits (228), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/169 (35%), Positives = 94/169 (55%), Gaps = 29/169 (17%)

Query: 22  YKSSISLDKLYPNSSMLLKTPTPDQVKAPDGLKFNGVIPVKAPDGLKFNGVIPVVIPRFS 81
           +KS  SLDKLYP S       +    + P+G K             + +  IP+      
Sbjct: 39  FKSIYSLDKLYPESQG-----SDTAWRVPNGAK-------------QADSDIPL------ 74

Query: 82  YITEELDITYSRSSGPGGQHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELNKNRLNKDG 141
              + L I+Y RSSGPGGQ+VN V++K ++RF +  A W+ E V++++   +KN++N+ G
Sbjct: 75  ---DRLTISYCRSSGPGGQNVNKVNSKAEVRFHLATAEWIAEPVRQKIAITHKNKINRLG 131

Query: 142 YLIIKSDRTRSQQLNLADAMTTLRNMIWKAAK-PAPQISEDT-IDRIRI 188
            LI+ S+ +R Q  NLAD +  +R+MI +A++ P     ED  + RIRI
Sbjct: 132 ELILTSESSRYQFRNLADCLQKIRDMITEASQTPKEPTKEDVKLHRIRI 180

Essential peptidyl-tRNA hydrolase component of the mitochondrial large ribosomal subunit. Acts as a codon-independent translation release factor that has lost all stop codon specificity and directs the termination of translation in mitochondrion, possibly in case of abortive elongation. May be involved in the hydrolysis of peptidyl-tRNAs that have been prematurely terminated and thus in the recycling of stalled mitochondrial ribosomes.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

>sp|P45388|ARFB_PSEPU Peptidyl-tRNA hydrolase OS=Pseudomonas putida PE=3 SV=1

 Score = 72.0 bits (175), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/88 (43%), Positives = 58/88 (65%), Gaps = 1/88 (1%)

Query: 86  ELDITYSRSSGPGGQHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELNKNRLNKDGYLII 145
           E+++TY R+ G GGQ+VN VS+ V +RF + A++ L E  K++L+ L  +R+  DG LII
Sbjct: 14  EIELTYIRAQGAGGQNVNKVSSAVHLRFDIPASS-LPEFYKERLLALRDSRITGDGVLII 72

Query: 146 KSDRTRSQQLNLADAMTTLRNMIWKAAK 173
           K+ + R+Q  N ADA+  L  +I  A K
Sbjct: 73  KAQQYRTQDQNRADALARLAELIIAAGK 100

Rescues stalled ribosomes. Can hydrolyze peptidyl-tRNA on ribosomes stalled by both non-stop mRNAs and mRNAs that contain rare codon clusters.

Pseudomonas putida (taxid: 303)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

>sp|P40711|ARFB_ECOLI Peptidyl-tRNA hydrolase YaeJ OS=Escherichia coli (strain K12) GN=yaeJ PE=1 SV=2

 Score = 68.2 bits (165), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 59/95 (62%), Gaps = 2/95 (2%)

Query: 75  VVIPRFSYITE-ELDITYSRSSGPGGQHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELN 133
           +VI R   I + EL+IT  R+ G GGQHVN  ST + +RF + A++ L E  K++L+  +
Sbjct: 2   IVISRHVAIPDGELEITAIRAQGAGGQHVNKTSTAIHLRFDIRASS-LPEYYKERLLAAS 60

Query: 134 KNRLNKDGYLIIKSDRTRSQQLNLADAMTTLRNMI 168
            + ++ DG ++IK+   RSQ+LN   A+  L  MI
Sbjct: 61  HHLISSDGVIVIKAQEYRSQELNREAALARLVAMI 95

Rescues stalled ribosomes. Can hydrolyze peptidyl-tRNA on ribosomes stalled by both non-stop mRNAs and mRNAs that contain rare codon clusters. May function as a complementary rescue system when the stalled ribosome can not be rescued by the SsrA(tmRNA)-SmpB quality control system or the alternative ribosome-rescue factor A.

Escherichia coli (strain K12) (taxid: 83333)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

>sp|Q9HDZ3|MUG82_SCHPO Meiotically up-regulated gene 82 protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mug82 PE=1 SV=1

 Score = 48.5 bits (114), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 65/114 (57%), Gaps = 16/114 (14%)

Query: 85  EELDITYSRSSGPGGQHVNSVSTK--VDIRFKVNAANWLNEDVKKQLI------ELNKNR 136
           +++ I++SRSSGPGGQ+VN ++TK  V++ FK      L   +   LI      E+ +N 
Sbjct: 47  DQVQISFSRSSGPGGQNVNKLNTKVIVNLPFK-----QLESCIPMFLINHFKTCEMLRNY 101

Query: 137 LNKDGYLIIKSDRTRSQQLNLADAMTTLRNMIWKAAKP--APQISEDTIDRIRI 188
             ++G + I S +TRSQ  N+ DA+  + +++ K+A+    P    + I RI I
Sbjct: 102 RIQNG-IKIYSQKTRSQHKNIEDALNKISDLLNKSAETLYVPDTPPEKIARISI 154

Has a role in meiosis.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	189
193580079	191	PREDICTED: peptidyl-tRNA hydrolase ICT1,	0.793	0.785	0.491	6e-42
380016742	198	PREDICTED: peptidyl-tRNA hydrolase ICT1,	0.719	0.686	0.509	2e-37
66520744	198	PREDICTED: peptidyl-tRNA hydrolase ICT1,	0.735	0.702	0.505	9e-37
170041675	200	immature colon carcinoma [Culex quinquef	0.783	0.74	0.491	1e-35
263173423	189	putative peptidyl-tRNA hydrolase [Cimex	0.798	0.798	0.474	4e-35
158296668	202	AGAP008425-PA [Anopheles gambiae str. PE	0.756	0.707	0.473	4e-35
195035783	203	GH11680 [Drosophila grimshawi] gi|193905	0.756	0.704	0.476	3e-34
383860211	200	PREDICTED: peptidyl-tRNA hydrolase ICT1,	0.804	0.76	0.449	3e-34
357625789	200	putative beta-keto adipate succinyl CoA	0.740	0.7	0.494	6e-34
157125949	200	orf 140; significant similarity to ORF n	0.783	0.74	0.463	8e-34

>gi|193580079|ref|XP_001952371.1| PREDICTED: peptidyl-tRNA hydrolase ICT1, mitochondrial-like [Acyrthosiphon pisum]

 Score =  176 bits (445), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 86/175 (49%), Positives = 123/175 (70%), Gaps = 25/175 (14%)

Query: 15  RNVVKRFYKSSISLDKLYPNSSMLLKTPTPDQVKAPDGLKFNGVIPVKAPDGLKFNGVIP 74
           R + +  Y S+ISL  L+P SS+ + TP+P+Q+                 D   F G IP
Sbjct: 14  RTLSRSNYTSAISLKNLHPKSSLKITTPSPEQL----------------ADNKIFTGYIP 57

Query: 75  VVIPRFSYITEELDITYSRSSGPGGQHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELNK 134
           V         EEL+ITYS SSGPGGQ+VN V+TKVD+RFKV +A WLNE+++++LI +N+
Sbjct: 58  V---------EELEITYSTSSGPGGQNVNKVNTKVDLRFKVESAQWLNEEIRQKLININQ 108

Query: 135 NRLNKDGYLIIKSDRTRSQQLNLADAMTTLRNMIWKAAKPAPQISEDTIDRIRIR 189
           N+L K+GYL+I+S++TRSQQLNLADA+  LR+++WKAA+P P+ SE++I++IR R
Sbjct: 109 NKLTKEGYLVIRSEKTRSQQLNLADAIERLRSLVWKAAEPEPKQSEESIEKIRRR 163

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380016742|ref|XP_003692333.1| PREDICTED: peptidyl-tRNA hydrolase ICT1, mitochondrial-like [Apis florea]

 Score =  160 bits (405), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 84/165 (50%), Positives = 111/165 (67%), Gaps = 29/165 (17%)

Query: 22  YKSSISLDKLYPNSSMLLKTPT--PDQVKAPDGLKFNGVIPVKAPDGLKFNGVIPVVIPR 79
           YKS+ SLDKLYP  ++ L TPT  P+   A    KF+G IP+K                 
Sbjct: 28  YKSAYSLDKLYPTHNIKLFTPTFVPEDPNA----KFSGYIPIK----------------- 66

Query: 80  FSYITEELDITYSRSSGPGGQHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELNKNRLNK 139
                 ELDITYSRSSG GGQHVN  +TKVD+RF + +A WL+E++K +L+E  KN+L+K
Sbjct: 67  ------ELDITYSRSSGAGGQHVNRTNTKVDVRFHLQSAKWLSEEIKSKLLEQYKNKLSK 120

Query: 140 DGYLIIKSDRTRSQQLNLADAMTTLRNMIWKAAKPAPQISEDTID 184
           +GY IIKS+ TRSQQLNLADA+  LR++IW+A KP P+IS +T++
Sbjct: 121 EGYFIIKSELTRSQQLNLADALRKLRDIIWEATKPPPEISSETLE 165

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66520744|ref|XP_393856.2| PREDICTED: peptidyl-tRNA hydrolase ICT1, mitochondrial-like [Apis mellifera]

 Score =  158 bits (400), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 85/168 (50%), Positives = 110/168 (65%), Gaps = 29/168 (17%)

Query: 22  YKSSISLDKLYPNSSMLLKTPT--PDQVKAPDGLKFNGVIPVKAPDGLKFNGVIPVVIPR 79
           YKS+ SLDKLYP  S+ L TPT  P+   A    KF+G IP+K                 
Sbjct: 28  YKSAYSLDKLYPTHSIKLFTPTFVPEDPNA----KFSGYIPIK----------------- 66

Query: 80  FSYITEELDITYSRSSGPGGQHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELNKNRLNK 139
                 EL+ITYSRSSG GGQHVN  ++KVDIRF + +A WL+E++K +L+E  KN+L+K
Sbjct: 67  ------ELNITYSRSSGAGGQHVNCTNSKVDIRFHLQSAKWLSEEIKSKLLEQYKNKLSK 120

Query: 140 DGYLIIKSDRTRSQQLNLADAMTTLRNMIWKAAKPAPQISEDTIDRIR 187
           +GYLIIKS+ TRSQQLNLADA+  LR  IW+A KP P+ S +T++  R
Sbjct: 121 EGYLIIKSELTRSQQLNLADALRKLRETIWEATKPPPETSPETLELKR 168

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170041675|ref|XP_001848580.1| immature colon carcinoma [Culex quinquefasciatus] gi|167865240|gb|EDS28623.1| immature colon carcinoma [Culex quinquefasciatus]

 Score =  154 bits (389), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 87/177 (49%), Positives = 119/177 (67%), Gaps = 29/177 (16%)

Query: 16  NVVKRFY--KSSISLDKLYPNSSMLLKTPTPDQVKAPDGLKFNGVIPVKAPDGLKFNGVI 73
           +V++R Y  KS +SLDK+YP+S++ L TP P Q                + D  KF+G I
Sbjct: 23  HVLRRNYSFKSDLSLDKIYPSSNLRLYTPPPPQ----------------STDS-KFSGFI 65

Query: 74  PVVIPRFSYITEELDITYSRSSGPGGQHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELN 133
           P+         ++L++TYSRSSGPGGQ+VN+VSTKVDIRFK+ AA+WL E  +K+L EL 
Sbjct: 66  PL---------DKLEVTYSRSSGPGGQNVNTVSTKVDIRFKLEAADWLPEATRKRLAELQ 116

Query: 134 KNRLNKDGYLIIKSDRTRSQQLNLADAMTTLRNMIWKAAKPAP-QISEDTIDRIRIR 189
           K RL KDGYLIIKS+ TRSQQ+N+ADA+  LR  I +A KP   ++S +T +++R R
Sbjct: 117 KGRLTKDGYLIIKSELTRSQQMNMADALEKLRTFIREAEKPTTVELSPETAEKLRRR 173

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|263173423|gb|ACY69938.1| putative peptidyl-tRNA hydrolase [Cimex lectularius]

 Score =  153 bits (386), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 85/179 (47%), Positives = 116/179 (64%), Gaps = 28/179 (15%)

Query: 11  ISNQRNVVKRFYKSSISLDKLYPNSSMLLKTPTPDQVKAPDGLKFNGVIPVKAPDGLKFN 70
           + N RN+    YKS+ISL  LYP SS+   TP    V  PD             +G  F+
Sbjct: 13  LPNTRNL--SLYKSNISLSNLYPKSSLNFTTP----VSIPD-------------NGSAFS 53

Query: 71  GVIPVVIPRFSYITEELDITYSRSSGPGGQHVNSVSTKVDIRFKVNAANWLNEDVKKQLI 130
           G IPV         +++DITYSRSSGPGGQHVN+V+TKVD+RF V +A WL++DVKK+++
Sbjct: 54  GFIPV---------DKVDITYSRSSGPGGQHVNTVNTKVDVRFHVESAEWLSDDVKKRIL 104

Query: 131 ELNKNRLNKDGYLIIKSDRTRSQQLNLADAMTTLRNMIWKAAKPAPQISEDTIDRIRIR 189
           E  KN++NKDGYL+++SD+TRSQ  N ADAM  LR +I  A    P I+++T++ +R R
Sbjct: 105 ENLKNKINKDGYLVVRSDKTRSQIYNQADAMMILRRLIHSALVTKPAITQETLEVLRKR 163

Source: Cimex lectularius

Species: Cimex lectularius

Genus: Cimex

Family: Cimicidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158296668|ref|XP_317020.4| AGAP008425-PA [Anopheles gambiae str. PEST] gi|157014821|gb|EAA12662.4| AGAP008425-PA [Anopheles gambiae str. PEST]

 Score =  152 bits (385), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 80/169 (47%), Positives = 112/169 (66%), Gaps = 26/169 (15%)

Query: 22  YKSSISLDKLYPNSSMLLKTPTPDQVKAPDGLKFNGVIPVKAPDGLKFNGVIPVVIPRFS 81
           YKS ++L+ +YPNSS+ L TP P               P  +PDG  FNG IP+      
Sbjct: 33  YKSDLALETIYPNSSLRLYTPPP---------------PAVSPDGT-FNGYIPL------ 70

Query: 82  YITEELDITYSRSSGPGGQHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELNKNRLNKDG 141
              E+L I+YSRSSGPGGQ+VN+VSTKVD+RF +  A WL E+ + +L +L+K R+ KDG
Sbjct: 71  ---EKLTISYSRSSGPGGQNVNTVSTKVDLRFHLETATWLPENTRNRLAQLHKGRITKDG 127

Query: 142 YLIIKSDRTRSQQLNLADAMTTLRNMIWKAAKP-APQISEDTIDRIRIR 189
           YL+IKS+ TRSQQ+N ADA+  LR  I +A +P + + SE+T++++R R
Sbjct: 128 YLVIKSELTRSQQMNTADALEKLRTFIRQAERPVSAEPSEETVEKLRRR 176

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195035783|ref|XP_001989351.1| GH11680 [Drosophila grimshawi] gi|193905351|gb|EDW04218.1| GH11680 [Drosophila grimshawi]

 Score =  150 bits (378), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 80/168 (47%), Positives = 108/168 (64%), Gaps = 25/168 (14%)

Query: 22  YKSSISLDKLYPNSSMLLKTPTPDQVKAPDGLKFNGVIPVKAPDGLKFNGVIPVVIPRFS 81
           YKS +SL+K+YPN+ + L TP P               P  + DG KFNG IP+      
Sbjct: 31  YKSDLSLEKIYPNARLQLYTPPP---------------PAASSDG-KFNGYIPM------ 68

Query: 82  YITEELDITYSRSSGPGGQHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELNKNRLNKDG 141
              ++LDITYSRSSGPGGQHVN+V+TKVD+RFK+  A W+ E  +++L+++  N+LNK+G
Sbjct: 69  ---DKLDITYSRSSGPGGQHVNTVNTKVDVRFKLAEAQWIPEKTRQKLLQVLANKLNKEG 125

Query: 142 YLIIKSDRTRSQQLNLADAMTTLRNMIWKAAKPAPQISEDTIDRIRIR 189
           Y  IKSD TRSQQLNLADA+  LR +I          SE T++++R R
Sbjct: 126 YFFIKSDLTRSQQLNLADALEKLRTLIRAQEVEPVGPSEQTLEKLRRR 173

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383860211|ref|XP_003705584.1| PREDICTED: peptidyl-tRNA hydrolase ICT1, mitochondrial-like [Megachile rotundata]

 Score =  150 bits (378), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 80/178 (44%), Positives = 115/178 (64%), Gaps = 26/178 (14%)

Query: 11  ISNQRNVVKRF-YKSSISLDKLYPNSSMLLKTPTPDQVKAPDGLKFNGVIPVKAPDGLKF 69
             N  N+ K F YKS+ +LD LYP S++ L +PT                  + PD  +F
Sbjct: 18  CQNVYNIGKAFVYKSAFALDNLYPTSNLKLYSPT---------------FTPENPDS-QF 61

Query: 70  NGVIPVVIPRFSYITEELDITYSRSSGPGGQHVNSVSTKVDIRFKVNAANWLNEDVKKQL 129
           NG IP+          EL I YSRSSGPGGQHVN  ++KV++RF V +A WL++++K++L
Sbjct: 62  NGYIPM---------NELQIRYSRSSGPGGQHVNCTNSKVNVRFHVVSAKWLSDEIKEKL 112

Query: 130 IELNKNRLNKDGYLIIKSDRTRSQQLNLADAMTTLRNMIWKAAKPAPQISEDTIDRIR 187
           ++L+ NR+ KDGYL+IKS+ T+SQQLNLADA+  LR +IW + KP P++S +T++  R
Sbjct: 113 LKLHHNRITKDGYLVIKSEITKSQQLNLADALGKLRMLIWDSIKPLPEVSAETMEAKR 170

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357625789|gb|EHJ76109.1| putative beta-keto adipate succinyl CoA transferase [Danaus plexippus]

 Score =  149 bits (375), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 84/170 (49%), Positives = 110/170 (64%), Gaps = 30/170 (17%)

Query: 22  YKSSISLDKLYPNSSMLLKTP--TPDQVKAPDGLKFNGVIPVKAPDGLKFNGVIPVVIPR 79
           YKSS+SL+ LYPNSS+ L TP  TPD  +                   KF+G IP+    
Sbjct: 29  YKSSLSLETLYPNSSLKLSTPAFTPDPKE-------------------KFSGYIPM---- 65

Query: 80  FSYITEELDITYSRSSGPGGQHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELNKNRLNK 139
                ++LDI YS SSGPGGQ+VN V TKVD+RFKVN A+W+  +++++L EL+ N+L K
Sbjct: 66  -----DKLDIKYSASSGPGGQNVNKVHTKVDLRFKVNEADWIPAEIREKLQELHNNKLTK 120

Query: 140 DGYLIIKSDRTRSQQLNLADAMTTLRNMIWKAAKPAPQISEDTIDRIRIR 189
           +GYL+I+SD TRSQQLNLAD +  LRNMI  AA    + S +T +RIR R
Sbjct: 121 EGYLVIRSDVTRSQQLNLADCLQKLRNMIRDAAVTKREPSPETEERIRQR 170

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157125949|ref|XP_001654462.1| orf 140; significant similarity to ORF next to beta-keto adipate succinyl CoA transferase from P. putida, putative [Aedes aegypti] gi|108873472|gb|EAT37697.1| AAEL010339-PA [Aedes aegypti]

 Score =  149 bits (375), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 82/177 (46%), Positives = 116/177 (65%), Gaps = 29/177 (16%)

Query: 16  NVVKRFY--KSSISLDKLYPNSSMLLKTPTPDQVKAPDGLKFNGVIPVKAPDGLKFNGVI 73
           +V++R Y  KS +SLDK+YP+S++ L TP P                     G KF G I
Sbjct: 23  HVLRRNYSFKSDLSLDKIYPSSNLRLYTPPPPHA-----------------TGDKFTGFI 65

Query: 74  PVVIPRFSYITEELDITYSRSSGPGGQHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELN 133
           P+         ++L+IT+SRSSGPGGQ+VN+VSTKVDIRF + +ANWL+E  +K+L EL+
Sbjct: 66  PL---------DKLEITHSRSSGPGGQNVNTVSTKVDIRFHLESANWLSEATRKRLAELH 116

Query: 134 KNRLNKDGYLIIKSDRTRSQQLNLADAMTTLRNMIWKAAKP-APQISEDTIDRIRIR 189
           KNR+ KDGYL ++S+ TRSQQ+N ADA+  LRN I +A  P + ++S +T + +R R
Sbjct: 117 KNRITKDGYLFVRSELTRSQQMNTADALEKLRNFIRQAEIPVSAEMSPETQEMLRRR 173

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	189
FB|FBgn0032261	203	CG6094 [Drosophila melanogaste	0.677	0.630	0.496	7.1e-29
UNIPROTKB|Q3T116	206	ICT1 "Peptidyl-tRNA hydrolase	0.550	0.504	0.424	1.1e-22
MGI|MGI:1915822	206	Ict1 "immature colon carcinoma	0.571	0.524	0.414	3.7e-22
UNIPROTKB|F1NND9	199	ICT1 "Uncharacterized protein"	0.582	0.552	0.363	3.7e-22
RGD|1307942	206	Ict1 "immature colon carcinoma	0.550	0.504	0.415	3.7e-22
UNIPROTKB|B5XAM2	191	ict1 "Peptidyl-tRNA hydrolase	0.513	0.507	0.5	5.5e-22
UNIPROTKB|Q14197	206	ICT1 "Peptidyl-tRNA hydrolase	0.550	0.504	0.424	9.7e-22
UNIPROTKB|D2HD32	206	ICT1 "Peptidyl-tRNA hydrolase	0.550	0.504	0.424	1.2e-21
UNIPROTKB|J3KS15	192	ICT1 "Peptidyl-tRNA hydrolase	0.550	0.541	0.407	1.2e-19
UNIPROTKB|F1PFI7	152	ICT1 "Uncharacterized protein"	0.550	0.684	0.433	1.7e-18

FB|FBgn0032261 CG6094 [Drosophila melanogaster (taxid:7227)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 70/141 (49%), Positives = 96/141 (68%)

Query:    52 GLKFNGVIPVKAPDGL-KFNGVIPVVIPRFSYITEELDITYSRSSGPGGQHVNSVSTKVD 110
             G +     P   P G  KF+G IP+         + L+ITYSRSSGPGGQHVN+V+TKVD
Sbjct:    43 GARLQIYTPPPPPSGSDKFSGFIPM---------DRLEITYSRSSGPGGQHVNTVNTKVD 93

Query:   111 IRFKVNAANWLNEDVKKQLIELNKNRLNKDGYLIIKSDRTRSQQLNLADAMTTLRNMI-- 168
             +RFKV  A+W+ E  +++L+++  NR+ KDGY  IKSD TRSQQ+NLADA+  LR +I  
Sbjct:    94 VRFKVAQADWIPEQTRQKLLKVLANRITKDGYFYIKSDLTRSQQMNLADALEKLRTIIRS 153

Query:   169 WKAAKPAPQISEDTIDRIRIR 189
              +A  PAP  SE+T++++R R
Sbjct:   154 QEAVAPAPP-SEETLEKLRRR 173

GO:0003747 "translation release factor activity" evidence=IEA

GO:0006415 "translational termination" evidence=IEA

UNIPROTKB|Q3T116 ICT1 "Peptidyl-tRNA hydrolase ICT1, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 226 (84.6 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
 Identities = 45/106 (42%), Positives = 77/106 (72%)

Query:    85 EELDITYSRSSGPGGQHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELNKNRLNKDGYLI 144
             + L I+Y RSSGPGGQ+VN V++K ++RF + +A+W+ E V++++   +KN++N+ G LI
Sbjct:    75 DRLTISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIAEPVRQKMALTHKNKINRAGELI 134

Query:   145 IKSDRTRSQQLNLADAMTTLRNMIWKAAKPAPQIS-EDT-IDRIRI 188
             + S+ +R Q  NLAD +  +R+MI +A++PA + S ED  + ++RI
Sbjct:   135 LTSEYSRYQFRNLADCLQKIRDMIAEASQPATEPSKEDAALQKLRI 180

GO:0005739 "mitochondrion" evidence=ISS

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=ISS

GO:0005762 "mitochondrial large ribosomal subunit" evidence=ISS

GO:0016150 "translation release factor activity, codon nonspecific" evidence=ISS

GO:0070126 "mitochondrial translational termination" evidence=ISS

MGI|MGI:1915822 Ict1 "immature colon carcinoma transcript 1" [Mus musculus (taxid:10090)]

 Score = 225 (84.3 bits), Expect = 3.7e-22, Sum P(2) = 3.7e-22
 Identities = 46/111 (41%), Positives = 77/111 (69%)

Query:    81 SYIT-EELDITYSRSSGPGGQHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELNKNRLNK 139
             SYI  + L I+Y RSSGPGGQ+VN V++K ++RF + +A+W+ E V++++   +KN++NK
Sbjct:    70 SYIPLDRLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIEEPVRQKIALTHKNKINK 129

Query:   140 DGYLIIKSDRTRSQQLNLADAMTTLRNMIWKAAK-PAPQISEDT-IDRIRI 188
              G L++ S+ +R Q  NLA+ +  +R+MI +A++ P     ED  + R+RI
Sbjct:   130 AGELVLTSESSRYQFRNLAECLQKIRDMIAEASQVPKEPSKEDARLQRLRI 180

GO:0003747 "translation release factor activity" evidence=IEA

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005762 "mitochondrial large ribosomal subunit" evidence=ISO

GO:0006412 "translation" evidence=IEA

GO:0006415 "translational termination" evidence=IEA

GO:0016150 "translation release factor activity, codon nonspecific" evidence=ISO

GO:0016787 "hydrolase activity" evidence=IEA

GO:0070126 "mitochondrial translational termination" evidence=ISO

UNIPROTKB|F1NND9 ICT1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 223 (83.6 bits), Expect = 3.7e-22, Sum P(2) = 3.7e-22
 Identities = 40/110 (36%), Positives = 75/110 (68%)

Query:    80 FSYITEELDITYSRSSGPGGQHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELNKNRLNK 139
             F+   + L ++YSRSSGPGGQ+VN V+TK ++RF + +A+W+ E V++++  +++N++N+
Sbjct:    63 FNIPMDRLTVSYSRSSGPGGQNVNKVNTKAEVRFHLASADWIPEAVREKMASMHRNKINR 122

Query:   140 DGYLIIKSDRTRSQQLNLADAMTTLRNMIWKAAKPAPQISEDTIDRIRIR 189
              G LI+ S+ +R Q  NLA  +  +R M+ +A +    +S++T  ++  R
Sbjct:   123 AGELIVNSEESRYQMRNLAICLEKIRVMVTEATEKPKVVSKETAQQLIAR 172

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IEA

GO:0005762 "mitochondrial large ribosomal subunit" evidence=IEA

GO:0016150 "translation release factor activity, codon nonspecific" evidence=IEA

GO:0070126 "mitochondrial translational termination" evidence=IEA

RGD|1307942 Ict1 "immature colon carcinoma transcript 1" [Rattus norvegicus (taxid:10116)]

 Score = 222 (83.2 bits), Expect = 3.7e-22, Sum P(2) = 3.7e-22
 Identities = 44/106 (41%), Positives = 74/106 (69%)

Query:    85 EELDITYSRSSGPGGQHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELNKNRLNKDGYLI 144
             + L I+Y RSSGPGGQ+VN V++K ++RF + +A+W+ E V++++   +KN++NK G L+
Sbjct:    75 DRLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIAEPVRQKIALTHKNKINKAGELV 134

Query:   145 IKSDRTRSQQLNLADAMTTLRNMIWKAAK-PAPQISEDT-IDRIRI 188
             + S+ +R Q  NLA+ +  +R+MI KA++ P     ED  + R+RI
Sbjct:   135 LTSESSRYQFRNLAECLQKIRDMIAKASQVPKEPSKEDAQLQRLRI 180

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IEA;ISO

GO:0005739 "mitochondrion" evidence=ISO

GO:0005762 "mitochondrial large ribosomal subunit" evidence=IEA;ISO

GO:0016150 "translation release factor activity, codon nonspecific" evidence=IEA;ISO

GO:0070126 "mitochondrial translational termination" evidence=IEA;ISO

UNIPROTKB|B5XAM2 ict1 "Peptidyl-tRNA hydrolase ICT1, mitochondrial" [Salmo salar (taxid:8030)]

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 49/98 (50%), Positives = 72/98 (73%)

Query:    85 EELDITYSRSSGPGGQHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELNKNRLNKDGYLI 144
             + L ++YSRSSGPGGQHVN VSTK ++RF V  A+W+ EDV++++I  NKNR+NK G L+
Sbjct:    60 DRLTVSYSRSSGPGGQHVNKVSTKAEVRFHVYTADWIPEDVRQKIILNNKNRINKAGELL 119

Query:   145 IKSDRTRSQQLNLADAMTTLRNMIWKAA-KPAPQISED 181
             + S+++RSQQ N+ D +  + ++I KA  KP    +ED
Sbjct:   120 VTSEQSRSQQRNMGDCIQKISDIIAKATEKPHEPSAED 157

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0005762 "mitochondrial large ribosomal subunit" evidence=ISS

GO:0016150 "translation release factor activity, codon nonspecific" evidence=ISS

GO:0070126 "mitochondrial translational termination" evidence=ISS

UNIPROTKB|Q14197 ICT1 "Peptidyl-tRNA hydrolase ICT1, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 218 (81.8 bits), Expect = 9.7e-22, Sum P(2) = 9.7e-22
 Identities = 45/106 (42%), Positives = 72/106 (67%)

Query:    85 EELDITYSRSSGPGGQHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELNKNRLNKDGYLI 144
             + L I+Y RSSGPGGQ+VN V++K ++RF +  A W+ E V++++   +KN++N+ G LI
Sbjct:    75 DRLTISYCRSSGPGGQNVNKVNSKAEVRFHLATAEWIAEPVRQKIAITHKNKINRLGELI 134

Query:   145 IKSDRTRSQQLNLADAMTTLRNMIWKAAK-PAPQISEDT-IDRIRI 188
             + S+ +R Q  NLAD +  +R+MI +A++ P     ED  + RIRI
Sbjct:   135 LTSESSRYQFRNLADCLQKIRDMITEASQTPKEPTKEDVKLHRIRI 180

GO:0070126 "mitochondrial translational termination" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0016150 "translation release factor activity, codon nonspecific" evidence=IDA

GO:0005762 "mitochondrial large ribosomal subunit" evidence=IDA

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IDA

UNIPROTKB|D2HD32 ICT1 "Peptidyl-tRNA hydrolase ICT1, mitochondrial" [Ailuropoda melanoleuca (taxid:9646)]

 Score = 221 (82.9 bits), Expect = 1.2e-21, Sum P(2) = 1.2e-21
 Identities = 45/106 (42%), Positives = 73/106 (68%)

Query:    85 EELDITYSRSSGPGGQHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELNKNRLNKDGYLI 144
             + L I+Y RSSGPGGQ+VN V++K ++RF +  A W+ E V++++  ++KN++N+ G LI
Sbjct:    75 DRLTISYCRSSGPGGQNVNKVNSKAEVRFHLATAEWIAEPVRQKMAIMHKNKINRSGELI 134

Query:   145 IKSDRTRSQQLNLADAMTTLRNMIWKAAK-PAPQISEDT-IDRIRI 188
             + S+ +R Q  NLAD +  +R+MI +A++ P     ED  + RIRI
Sbjct:   135 LTSECSRYQFRNLADCLQKIRDMIAEASQTPKEPSKEDAALHRIRI 180

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0005762 "mitochondrial large ribosomal subunit" evidence=ISS

GO:0016150 "translation release factor activity, codon nonspecific" evidence=ISS

GO:0070126 "mitochondrial translational termination" evidence=ISS

UNIPROTKB|J3KS15 ICT1 "Peptidyl-tRNA hydrolase ICT1, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 198 (74.8 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
 Identities = 46/113 (40%), Positives = 73/113 (64%)

Query:    85 EELDITYSRSSGPGGQHVNSVSTKVDIRFKVNAANWLNEDVKKQLI------EL-NKNRL 137
             + L I+Y RSSGPGGQ+VN V++K ++RF +  A W+ E V++++        L +KN++
Sbjct:    75 DRLTISYCRSSGPGGQNVNKVNSKAEVRFHLATAEWIAEPVRQKIAITFFICSLQHKNKI 134

Query:   138 NKDGYLIIKSDRTRSQQLNLADAMTTLRNMIWKAAK-PAPQISEDT-IDRIRI 188
             N+ G LI+ S+ +R Q  NLAD +  +R+MI +A++ P     ED  + RIRI
Sbjct:   135 NRLGELILTSESSRYQFRNLADCLQKIRDMITEASQTPKEPTKEDVKLHRIRI 187

GO:0003747 "translation release factor activity" evidence=IEA

UNIPROTKB|F1PFI7 ICT1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
 Identities = 46/106 (43%), Positives = 74/106 (69%)

Query:    85 EELDITYSRSSGPGGQHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELNKNRLNKDGYLI 144
             + L I+Y RSSGPGGQ+VN V++K ++RF +  A W+ E V++++   ++N++NK G LI
Sbjct:    21 DRLTISYCRSSGPGGQNVNKVNSKAEVRFHLATAEWIAEPVRQKIAITHRNKINKSGELI 80

Query:   145 IKSDRTRSQQLNLADAMTTLRNMIWKAAKPAPQIS-EDTI-DRIRI 188
             + S+ +R Q  NLAD +  +R+MI KA++ A + S ED +  R+RI
Sbjct:    81 LTSECSRYQFRNLADCLQKIRDMIAKASQTATEPSKEDALLHRLRI 126

GO:0070126 "mitochondrial translational termination" evidence=IEA

GO:0016150 "translation release factor activity, codon nonspecific" evidence=IEA

GO:0005762 "mitochondrial large ribosomal subunit" evidence=IEA

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8R035	ICT1_MOUSE	3, ., 1, ., 1, ., 2, 9	0.3333	0.7830	0.7184	yes	N/A
Q3T116	ICT1_BOVIN	3, ., 1, ., 1, ., 2, 9	0.3502	0.7830	0.7184	yes	N/A
Q14197	ICT1_HUMAN	3, ., 1, ., 1, ., 2, 9	0.3550	0.7407	0.6796	yes	N/A
D2HD32	ICT1_AILME	3, ., 1, ., 1, ., 2, 9	0.3491	0.7407	0.6796	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.1	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	189
PRK09256	138	PRK09256, PRK09256, hypothetical protein; Provisio	2e-29
COG1186	239	COG1186, PrfB, Protein chain release factor B [Tra	3e-16
pfam00472	114	pfam00472, RF-1, RF-1 domain	3e-13
PRK00578	367	PRK00578, prfB, peptide chain release factor 2; Va	2e-05
PRK00591	359	PRK00591, prfA, peptide chain release factor 1; Va	6e-05
PRK08179	200	PRK08179, prfH, peptide chain release factor-like	2e-04
TIGR00020	364	TIGR00020, prfB, peptide chain release factor 2	0.002
COG0216	363	COG0216, PrfA, Protein chain release factor A [Tra	0.002
TIGR00019	360	TIGR00019, prfA, peptide chain release factor 1	0.003
TIGR03072	200	TIGR03072, release_prfH, putative peptide chain re	0.004

>gnl|CDD|181730 PRK09256, PRK09256, hypothetical protein; Provisional

 Score =  105 bits (264), Expect = 2e-29
 Identities = 40/91 (43%), Positives = 61/91 (67%), Gaps = 1/91 (1%)

Query: 86  ELDITYSRSSGPGGQHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELNKNRLNKDGYLII 145
           EL+  + R+SGPGGQ+VN VST V++RF + A++ L E  K++L+ L  +R+ KDG ++I
Sbjct: 14  ELEWRFIRASGPGGQNVNKVSTAVELRFDIAASS-LPEFYKERLLALAGHRITKDGVIVI 72

Query: 146 KSDRTRSQQLNLADAMTTLRNMIWKAAKPAP 176
           K+   RSQ+ N  DA+  L  +I +A KP  
Sbjct: 73  KAQEFRSQERNREDALERLVALIREALKPPK 103

Length = 138

>gnl|CDD|224107 COG1186, PrfB, Protein chain release factor B [Translation, ribosomal structure and biogenesis]

 Score = 73.4 bits (181), Expect = 3e-16
 Identities = 23/76 (30%), Positives = 34/76 (44%)

Query: 85  EELDITYSRSSGPGGQHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELNKNRLNKDGYLI 144
           ++L I   R+SG GGQHVN   + V +         L ++ + Q +     R    G L 
Sbjct: 110 DDLRIDTYRASGAGGQHVNKTDSAVRLTHLPTGIVVLCQNERSQHLNKALARKMLKGKLY 169

Query: 145 IKSDRTRSQQLNLADA 160
           I +   RSQ+ N   A
Sbjct: 170 ILAQEKRSQEKNRERA 185

Length = 239

>gnl|CDD|201249 pfam00472, RF-1, RF-1 domain

 Score = 63.0 bits (154), Expect = 3e-13
 Identities = 24/105 (22%), Positives = 38/105 (36%), Gaps = 26/105 (24%)

Query: 74  PVVIPRFSYITE-ELDITYSRSSGPGGQHVNSVSTKVDIRFKVNAANWLNEDVKKQLIEL 132
           P+       I E +L I   RSSGPGGQ+VN   + V +                     
Sbjct: 1   PLDEEVEIEIPESDLRIDTFRSSGPGGQNVNKTESAVRLTH------------------- 41

Query: 133 NKNRLNKDGYLIIKSDRTRSQQLNLADAMTTLRNMIWKAAKPAPQ 177
                     +++K    RSQ  N   A+  L+  +++A     +
Sbjct: 42  ------LPTGIVVKCQEERSQHKNREKALERLKAKLYEAELQKKR 80

This domain is found in peptide chain release factors such as RF-1 and RF-2, and a number of smaller proteins of unknown function. This domain contains the peptidyl-tRNA hydrolase activity. The domain contains a highly conserved motif GGQ, where the glutamine is thought to coordinate the water that mediates the hydrolysis. Length = 114

>gnl|CDD|234799 PRK00578, prfB, peptide chain release factor 2; Validated

 Score = 44.1 bits (105), Expect = 2e-05
 Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 12/47 (25%)

Query: 72  VIPVV-------IPRFSYITEELDITYSRSSGPGGQHVNSVSTKVDI 111
           V P V       I       ++L I   RSSG GGQHVN   + V I
Sbjct: 220 VYPEVDDTIEIEIN-----PKDLRIDTYRSSGAGGQHVNKTDSAVRI 261

Length = 367

>gnl|CDD|234801 PRK00591, prfA, peptide chain release factor 1; Validated

 Score = 42.0 bits (100), Expect = 6e-05
 Identities = 14/27 (51%), Positives = 18/27 (66%)

Query: 85  EELDITYSRSSGPGGQHVNSVSTKVDI 111
           ++L I   RSSG GGQHVN+  + V I
Sbjct: 221 KDLRIDTFRSSGAGGQHVNTTDSAVRI 247

Length = 359

>gnl|CDD|181271 PRK08179, prfH, peptide chain release factor-like protein; Reviewed

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 19/37 (51%), Positives = 22/37 (59%), Gaps = 4/37 (10%)

Query: 77  IPRFSYITEEL--DITYS--RSSGPGGQHVNSVSTKV 109
           I RFS   EE   +I +   RSSGPGGQHVN   + V
Sbjct: 95  IGRFSADEEEQSDEIRFETLRSSGPGGQHVNKTDSAV 131

Length = 200

>gnl|CDD|232785 TIGR00020, prfB, peptide chain release factor 2

 Score = 38.2 bits (89), Expect = 0.002
 Identities = 14/28 (50%), Positives = 17/28 (60%)

Query: 84  TEELDITYSRSSGPGGQHVNSVSTKVDI 111
            E+L I   R+SG GGQHVN   + V I
Sbjct: 234 PEDLRIDTYRASGAGGQHVNKTDSAVRI 261

In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a PFAM model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc [Protein synthesis, Translation factors]. Length = 364

>gnl|CDD|223294 COG0216, PrfA, Protein chain release factor A [Translation, ribosomal structure and biogenesis]

 Score = 37.6 bits (88), Expect = 0.002
 Identities = 14/27 (51%), Positives = 18/27 (66%)

Query: 85  EELDITYSRSSGPGGQHVNSVSTKVDI 111
           ++L I   RSSG GGQHVN+  + V I
Sbjct: 223 KDLRIDTFRSSGAGGQHVNTTDSAVRI 249

Length = 363

>gnl|CDD|129130 TIGR00019, prfA, peptide chain release factor 1

 Score = 37.0 bits (86), Expect = 0.003
 Identities = 14/27 (51%), Positives = 17/27 (62%)

Query: 85  EELDITYSRSSGPGGQHVNSVSTKVDI 111
            +L I   RSSG GGQHVN+  + V I
Sbjct: 221 ADLRIDTFRSSGAGGQHVNTTDSAVRI 247

This model describes peptide chain release factor 1 (PrfA, RF-1), and excludes the related peptide chain release factor 2 (PrfB, RF-2). RF-1 helps recognize and terminate translation at UAA and UAG stop codons. The mitochondrial release factors are prfA-like, although not included above the trusted cutoff for this model. RF-1 does not have a translational frameshift [Protein synthesis, Translation factors]. Length = 360

>gnl|CDD|213768 TIGR03072, release_prfH, putative peptide chain release factor H

 Score = 36.3 bits (84), Expect = 0.004
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%)

Query: 84  TEELDITYS--RSSGPGGQHVNSVSTKV 109
             E +I +   RSSGPGGQHVN   + V
Sbjct: 103 ATEDEIRFETLRSSGPGGQHVNKTESAV 130

Members of this protein family are bacterial proteins homologous to peptide chain release factors 1 (RF-1, product of the prfA gene), and 2 (RF-2, product of the prfB gene). The member from Escherichia coli K-12, designated prfH, appears to be a pseudogene. This class I release factor is always found as the downstream gene of a two-gene operon [Protein synthesis, Translation factors]. Length = 200

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	189
KOG3429|consensus	172		100.0
PRK09256	138	hypothetical protein; Provisional	100.0
COG0216	363	PrfA Protein chain release factor A [Translation,	100.0
PRK07342	339	peptide chain release factor 2; Provisional	99.96
PRK05589	325	peptide chain release factor 2; Provisional	99.96
TIGR00019	360	prfA peptide chain release factor 1. This model de	99.96
PRK08787	313	peptide chain release factor 2; Provisional	99.96
PRK06746	326	peptide chain release factor 2; Provisional	99.96
PRK00578	367	prfB peptide chain release factor 2; Validated	99.95
TIGR00020	364	prfB peptide chain release factor 2. In many but n	99.95
KOG2726|consensus	386		99.95
PRK00591	359	prfA peptide chain release factor 1; Validated	99.95
PF00472	113	RF-1: RF-1 domain; InterPro: IPR000352 Peptide cha	99.94
TIGR03072	200	release_prfH putative peptide chain release factor	99.94
PRK08179	200	prfH peptide chain release factor-like protein; Re	99.93
COG1186	239	PrfB Protein chain release factor B [Translation,	99.92
PF10213	127	MRP-S28: Mitochondrial ribosomal subunit protein ;	98.18
KOG3933|consensus	296		97.04
COG1186	239	PrfB Protein chain release factor B [Translation,	92.61

>KOG3429|consensus

Probab=100.00  E-value=1.2e-45  Score=302.40  Aligned_cols=141  Identities=52%  Similarity=0.838  Sum_probs=132.5

Q ss_pred             eeeeeeccccCCCCCCCccCCCCCCCCCCCCCcccccccccCCCCcceeEEeecccCCCCcCCCCeEEEEeccCCCCccC
Q psy14432         22 YKSSISLDKLYPNSSMLLKTPTPDQVKAPDGLKFNGVIPVKAPDGLKFNGVIPVVIPRFSYITEELDITYSRSSGPGGQH  101 (189)
Q Consensus        22 ~~s~~sld~lyp~s~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~v~p~~~~~~~i~~~~l~i~fsRSSGPGGQn  101 (189)
                      |+++++|+++|| ..+..++++.+  +.. +.+|.|.||+                       +.++++|+|||||||||
T Consensus         4 ~k~~~~l~~n~~-~~~~~~t~~~~--~sg-~~~~~g~ipl-----------------------d~~~i~y~RSSGPGGQN   56 (172)
T KOG3429|consen    4 IKSSRSLDKNYP-KCLLTKTETRQ--PSG-AIHFKGKIPL-----------------------DQLEISYSRSSGPGGQN   56 (172)
T ss_pred             cchhHhHHhhhh-hhhcccccccC--Ccc-ccccCCCCch-----------------------hheEEEEeecCCCCCcc
Confidence            899999999999 44446666655  566 8899999999                       99999999999999999


Q ss_pred             CCcccceEEEEEecCCCCccCHHHHHHHHHHhcccccCCceEEEEEcCcccHHHHHHHHHHHHHHHHHHhhCCCC-CCCh
Q psy14432        102 VNSVSTKVDIRFKVNAANWLNEDVKKQLIELNKNRLNKDGYLIIKSDRTRSQQLNLADAMTTLRNMIWKAAKPAP-QISE  180 (189)
Q Consensus       102 VNKv~SkV~Lrfhl~s~~wLp~~~r~~L~~~~~~ri~k~G~LvI~s~~~RSQ~~Nr~~Al~kL~~~I~~a~~~pk-~~S~  180 (189)
                      |||+||||++||++..+.|||+++|+.|+..+.+||+++|+|+|.||++|||+.|.+|||+||+++|++++.+|+ +|++
T Consensus        57 VNKvNTKv~vrf~vs~a~Wipe~~R~~~~~~~~~rink~gelvI~Sd~TRsq~~NiaDcleKlr~~I~~~~~~~~~~~te  136 (172)
T KOG3429|consen   57 VNKVNTKVEVRFKVSNAEWIPEFLRNKLLTTEKNRINKDGELVIYSDKTRSQHKNIADCLEKLRDIIRAAEQTPPVDPTE  136 (172)
T ss_pred             cccccceEEEEEecchhhhccHHHHHHHHHHHHHhhccCccEEEecchhHHhhccHHHHHHHHHHHHHHHhcCCCCCCCH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999998888 9999


Q ss_pred             hhHHHHhhC
Q psy14432        181 DTIDRIRIR  189 (189)
Q Consensus       181 Et~~~~r~~  189 (189)
                      ||.++|++|
T Consensus       137 E~~kk~r~~  145 (172)
T KOG3429|consen  137 ETIKKIRIR  145 (172)
T ss_pred             HHHHHHHHH
Confidence            999999875

>PRK09256 hypothetical protein; Provisional

Probab=100.00  E-value=1.7e-36  Score=242.77  Aligned_cols=100  Identities=41%  Similarity=0.624  Sum_probs=95.5

Q ss_pred             ccCCCCcCCCCeEEEEeccCCCCccCCCcccceEEEEEecCCCCccCHHHHHHHHHHhcccccCCceEEEEEcCcccHHH
Q psy14432         76 VIPRFSYITEELDITYSRSSGPGGQHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELNKNRLNKDGYLIIKSDRTRSQQL  155 (189)
Q Consensus        76 ~~~~~~i~~~~l~i~fsRSSGPGGQnVNKv~SkV~Lrfhl~s~~wLp~~~r~~L~~~~~~ri~k~G~LvI~s~~~RSQ~~  155 (189)
                      +.+++.|++++|+++|+|||||||||||||+|||+|+|++..+ |||++++++|.+++.++++++|.|+|+||++|||++
T Consensus         4 ~~~~~~i~~~~l~~~~~RSSGPGGQ~VNKt~SkV~l~~~~~~~-~lp~~~~~~l~~~~~~r~~~~g~l~i~~~~~RSQ~~   82 (138)
T PRK09256          4 ITRRLVIPENELEWRFIRASGPGGQNVNKVSTAVELRFDIAAS-SLPEFYKERLLALAGHRITKDGVIVIKAQEFRSQER   82 (138)
T ss_pred             cCccCccCHHHeEEEEEEcCCCCcccccccceeeEEEechhhc-cCCHHHHHHHHHHhcCcccCCCcEEEEECCcCCHHH
Confidence            5567889999999999999999999999999999999999988 999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhCCCC
Q psy14432        156 NLADAMTTLRNMIWKAAKPAP  176 (189)
Q Consensus       156 Nr~~Al~kL~~~I~~a~~~pk  176 (189)
                      |+++|+++|+++|.++..+|+
T Consensus        83 Nr~~al~kL~~~i~~~~~~p~  103 (138)
T PRK09256         83 NREDALERLVALIREALKPPK  103 (138)
T ss_pred             HHHHHHHHHHHHHHHHhhccc
Confidence            999999999999999977655

>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=4.1e-35  Score=262.67  Aligned_cols=132  Identities=26%  Similarity=0.358  Sum_probs=120.6

Q ss_pred             hhhhcccceeeeeeeeeeccccCCCCCCCccCCCCCCC--CCCCCCcccccccccCCCCcceeEEeecccC--CCCcCCC
Q psy14432         10 LISNQRNVVKRFYKSSISLDKLYPNSSMLLKTPTPDQV--KAPDGLKFNGVIPVKAPDGLKFNGVIPVVIP--RFSYITE   85 (189)
Q Consensus        10 ~~~~~~~~~~~~~~s~~sld~lyp~s~~~~~~~~~~~~--~~~~~~~~~g~i~~~~~~~~~~~~v~p~~~~--~~~i~~~   85 (189)
                      +++...+..|-.-+.+.++.-  .+.|.+|+.++++||  +.| .+|++|||||    |+|+|+|||++++  .+.|+++
T Consensus       151 i~s~se~~~GG~kEii~~I~G--~gvys~LKfEsGvHRVQRVP-~TEsqGRIHT----StaTVaVlPE~ee~~ei~I~~~  223 (363)
T COG0216         151 ILSASESELGGYKEIIASISG--KGVYSRLKFESGVHRVQRVP-ATESQGRIHT----SAATVAVLPEVEEVEEIEINPK  223 (363)
T ss_pred             EeecCcccCCCceEEEEEEec--cchhhhhhhccCccceeccc-cccCCCceee----cceeEEeccCCCcccccccChH
Confidence            566677777775567777777  788999999999999  889 9999999999    4699999999975  5899999


Q ss_pred             CeEEEEeccCCCCccCCCcccceEEEEEecCCCCccCHHHHHHHHHHhcccccCCceEEEEEcCcccHHHHHHHHHHHHH
Q psy14432         86 ELDITYSRSSGPGGQHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELNKNRLNKDGYLIIKSDRTRSQQLNLADAMTTLR  165 (189)
Q Consensus        86 ~l~i~fsRSSGPGGQnVNKv~SkV~Lrfhl~s~~wLp~~~r~~L~~~~~~ri~k~G~LvI~s~~~RSQ~~Nr~~Al~kL~  165 (189)
                      ||+|+++||||+||||||+|+|+|+|+ |+|++                        |+|+||++|||++|++.||..|+
T Consensus       224 DlrIDt~RsSGaGGQhVNtTdSAVRiT-HlPTG------------------------IvV~cQderSQ~kNk~kAmkvL~  278 (363)
T COG0216         224 DLRIDTFRSSGAGGQHVNTTDSAVRIT-HLPTG------------------------IVVECQDERSQHKNKAKAMKVLR  278 (363)
T ss_pred             HceeeeeecCCCCCCCcCccchhheee-ecCCc------------------------eEEEecchhhhhhhHHHHHHHHH
Confidence            999999999999999999999999999 99999                        99999999999999999999999


Q ss_pred             HHHHHhhC
Q psy14432        166 NMIWKAAK  173 (189)
Q Consensus       166 ~~I~~a~~  173 (189)
                      ++|+++..
T Consensus       279 ARl~~~~~  286 (363)
T COG0216         279 ARLYDAER  286 (363)
T ss_pred             HHHHHHHH
Confidence            99999854

>PRK07342 peptide chain release factor 2; Provisional

Probab=99.96  E-value=1.9e-29  Score=226.70  Aligned_cols=121  Identities=26%  Similarity=0.307  Sum_probs=109.3

Q ss_pred             eeee-eeeccccCCCCCCCccCCCCCCC--CCCCCCcccccccccCCCCcceeEEeecccC--CCCcCCCCeEEEEeccC
Q psy14432         21 FYKS-SISLDKLYPNSSMLLKTPTPDQV--KAPDGLKFNGVIPVKAPDGLKFNGVIPVVIP--RFSYITEELDITYSRSS   95 (189)
Q Consensus        21 ~~~s-~~sld~lyp~s~~~~~~~~~~~~--~~~~~~~~~g~i~~~~~~~~~~~~v~p~~~~--~~~i~~~~l~i~fsRSS   95 (189)
                      .|+| .+.++-  ++.++.|+.+.++|+  +.| ..+.+|++||    ++++|.|+|.+++  .+.|++++|+++|+|||
T Consensus       137 g~ksa~l~i~G--~~ay~~lk~E~GvHrv~rvs-p~~~~~rrhT----s~a~V~VlP~~~~~~~~~i~~~dl~~~~~Rss  209 (339)
T PRK07342        137 GIKSATILVKG--HNAYGWLKTESGVHRLVRIS-PYDSNARRHT----SFASIWVYPVIDDNIEVDVNESDVRIDTYRSS  209 (339)
T ss_pred             ceEEEEEEEec--cCHHHHHhhccceeEEEecC-CCCCCCCeEe----EEEEEEEEcCCCcccccccCcccEEEEEEECC
Confidence            3454 567776  778888999999998  677 7899999999    4699999999875  58899999999999999


Q ss_pred             CCCccCCCcccceEEEEEecCCCCccCHHHHHHHHHHhcccccCCceEEEEEcCcccHHHHHHHHHHHHHHHHHHhhC
Q psy14432         96 GPGGQHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELNKNRLNKDGYLIIKSDRTRSQQLNLADAMTTLRNMIWKAAK  173 (189)
Q Consensus        96 GPGGQnVNKv~SkV~Lrfhl~s~~wLp~~~r~~L~~~~~~ri~k~G~LvI~s~~~RSQ~~Nr~~Al~kL~~~I~~a~~  173 (189)
                      ||||||||||+|+|+|+ |+|++                        |+|+|+++|||++|++.||++|+++|++...
T Consensus       210 G~GGQ~VNkt~saVrl~-H~ptg------------------------i~v~~~~eRSQ~~Nk~~A~~~L~~~L~~~~~  262 (339)
T PRK07342        210 GAGGQHVNTTDSAVRIT-HIPTG------------------------IVVQCQQERSQHKNRAKAWSMLRARLYEEEL  262 (339)
T ss_pred             CCCCCCccceeeeEEEE-EcCCc------------------------EEEEECCcccHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999 99998                        9999999999999999999999999998754

>PRK05589 peptide chain release factor 2; Provisional

Probab=99.96  E-value=3.8e-29  Score=223.78  Aligned_cols=120  Identities=23%  Similarity=0.318  Sum_probs=108.7

Q ss_pred             eeee-eeeccccCCCCCCCccCCCCCCC--CCCCCCcccccccccCCCCcceeEEeecccC--CCCcCCCCeEEEEeccC
Q psy14432         21 FYKS-SISLDKLYPNSSMLLKTPTPDQV--KAPDGLKFNGVIPVKAPDGLKFNGVIPVVIP--RFSYITEELDITYSRSS   95 (189)
Q Consensus        21 ~~~s-~~sld~lyp~s~~~~~~~~~~~~--~~~~~~~~~g~i~~~~~~~~~~~~v~p~~~~--~~~i~~~~l~i~fsRSS   95 (189)
                      .|+| .+.++-  ++.++.|+.+.++|+  +.| ..+.+|++||    ++++|.|+|..++  ++.|+++||+|+|+|||
T Consensus       134 g~ks~~~~i~G--~~ay~~lk~E~GvHrv~r~s-~~~~~~rr~t----s~a~V~VlP~~~~~~~~~i~~~dl~~~~~rss  206 (325)
T PRK05589        134 GIKSVTLKITG--EFAYGYLKAEKGIHRLVRIS-PFNANGKRQT----SFASVEVLPELTDDQDIEIRSEDLKIDTYRAG  206 (325)
T ss_pred             ceEEEEEEEec--cCHHHHHhhccceEEEEEcC-CCCCCCCeEe----eeEEEEEecCcCccccccCCchheEEEEeeCC
Confidence            4554 567776  778888999999998  677 7899999999    4699999999865  68999999999999999


Q ss_pred             CCCccCCCcccceEEEEEecCCCCccCHHHHHHHHHHhcccccCCceEEEEEcCcccHHHHHHHHHHHHHHHHHHhh
Q psy14432         96 GPGGQHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELNKNRLNKDGYLIIKSDRTRSQQLNLADAMTTLRNMIWKAA  172 (189)
Q Consensus        96 GPGGQnVNKv~SkV~Lrfhl~s~~wLp~~~r~~L~~~~~~ri~k~G~LvI~s~~~RSQ~~Nr~~Al~kL~~~I~~a~  172 (189)
                      ||||||||||+|+|+|+ |+|++                        |+|+|+++|||++|++.|+++|+++|++..
T Consensus       207 G~GGQ~VNkt~saVrl~-H~ptg------------------------i~v~~q~eRSQ~~Nk~~A~~~L~~kL~~~~  258 (325)
T PRK05589        207 GAGGQHVNKTESAVRIT-HIPTG------------------------IVVQCQNERSQHSNKETAMKMLKSKLVELK  258 (325)
T ss_pred             CCCCCcccceeeEEEEE-ECCCC------------------------EEEEECCccCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999 99998                        999999999999999999999999999864

>TIGR00019 prfA peptide chain release factor 1

Probab=99.96  E-value=4.6e-29  Score=225.79  Aligned_cols=119  Identities=25%  Similarity=0.336  Sum_probs=107.5

Q ss_pred             eeeeeccccCCCCCCCccCCCCCCC--CCCCCCcccccccccCCCCcceeEEeecccC-CCCcCCCCeEEEEeccCCCCc
Q psy14432         23 KSSISLDKLYPNSSMLLKTPTPDQV--KAPDGLKFNGVIPVKAPDGLKFNGVIPVVIP-RFSYITEELDITYSRSSGPGG   99 (189)
Q Consensus        23 ~s~~sld~lyp~s~~~~~~~~~~~~--~~~~~~~~~g~i~~~~~~~~~~~~v~p~~~~-~~~i~~~~l~i~fsRSSGPGG   99 (189)
                      ...+.++-  ++.++.|+.+.++|+  +.| ..+++||+||    ++++|.|+|.+++ .+.|+++||+|+|+|||||||
T Consensus       163 sa~l~i~G--~~ay~~lk~E~GvHrv~Rvp-~~~s~~R~hT----sfa~V~v~P~~~~~~~~i~~~dl~~~~~RssG~GG  235 (360)
T TIGR00019       163 EVIAEIKG--DGVYSRLKFESGVHRVQRVP-VTESQGRIHT----SAATVAVMPELEEVEVDINPADLRIDTFRSSGAGG  235 (360)
T ss_pred             EEEEEEec--ccHHHHHhhcCeeEEEECCC-CCCCCCCeec----ceeEEEEEcCCCccccccCcccEEEEEEECCCCCC
Confidence            34556666  566888899999998  788 8999999999    4699999999864 688999999999999999999


Q ss_pred             cCCCcccceEEEEEecCCCCccCHHHHHHHHHHhcccccCCceEEEEEcCcccHHHHHHHHHHHHHHHHHHhhC
Q psy14432        100 QHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELNKNRLNKDGYLIIKSDRTRSQQLNLADAMTTLRNMIWKAAK  173 (189)
Q Consensus       100 QnVNKv~SkV~Lrfhl~s~~wLp~~~r~~L~~~~~~ri~k~G~LvI~s~~~RSQ~~Nr~~Al~kL~~~I~~a~~  173 (189)
                      ||||||+|+|+|+ |+|++                        |+|.|+++|||++|++.||++|+++|++...
T Consensus       236 Q~VNkt~SaVrl~-h~ptg------------------------i~V~~~~eRSQ~~Nk~~A~~~L~~~L~~~~~  284 (360)
T TIGR00019       236 QHVNTTDSAVRIT-HLPTG------------------------IVVECQDERSQHKNKDKAMKVLRARLYEAEQ  284 (360)
T ss_pred             CCcCceeeeEEEE-ECCCc------------------------EEEEECCccCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999 99998                        9999999999999999999999999998763

This model describes peptide chain release factor 1 (PrfA, RF-1), and excludes the related peptide chain release factor 2 (PrfB, RF-2). RF-1 helps recognize and terminate translation at UAA and UAG stop codons. The mitochondrial release factors are prfA-like, although not included above the trusted cutoff for this model. RF-1 does not have a translational frameshift.

>PRK08787 peptide chain release factor 2; Provisional

Probab=99.96  E-value=3.9e-29  Score=222.69  Aligned_cols=120  Identities=23%  Similarity=0.263  Sum_probs=107.8

Q ss_pred             eee-eeeccccCCCCCCCccCCCCCCC--CCCCCCcccccccccCCCCcceeEEeecccC--CCCcCCCCeEEEEeccCC
Q psy14432         22 YKS-SISLDKLYPNSSMLLKTPTPDQV--KAPDGLKFNGVIPVKAPDGLKFNGVIPVVIP--RFSYITEELDITYSRSSG   96 (189)
Q Consensus        22 ~~s-~~sld~lyp~s~~~~~~~~~~~~--~~~~~~~~~g~i~~~~~~~~~~~~v~p~~~~--~~~i~~~~l~i~fsRSSG   96 (189)
                      |+| .+.++-  ++.|+.|+.+.++|+  +.| ....+|++||    ++++|.|+|.+++  ++.|+++||+|+|+||||
T Consensus       115 iksa~l~I~G--~~ayg~lk~E~GvHRv~R~s-p~~s~~rrhT----sfasV~V~P~~~~~~~i~i~~~dl~~~~~RssG  187 (313)
T PRK08787        115 IKSATVRIEG--EYAYGWLKTEIGVHRLVRKS-PFDSDNRRHT----SFTSVFVSPEVDDNIEIDINPADLRTDVYRSSG  187 (313)
T ss_pred             eeEEEEEEec--ccHHHHHhhccCeeEEEecC-CCCCCCCEEe----eeEEEEEecCcCcccccccChhHeEEEEEECCC
Confidence            444 566766  667888999999998  666 7889999999    4699999999865  688999999999999999


Q ss_pred             CCccCCCcccceEEEEEecCCCCccCHHHHHHHHHHhcccccCCceEEEEEcCcccHHHHHHHHHHHHHHHHHHhhC
Q psy14432         97 PGGQHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELNKNRLNKDGYLIIKSDRTRSQQLNLADAMTTLRNMIWKAAK  173 (189)
Q Consensus        97 PGGQnVNKv~SkV~Lrfhl~s~~wLp~~~r~~L~~~~~~ri~k~G~LvI~s~~~RSQ~~Nr~~Al~kL~~~I~~a~~  173 (189)
                      |||||||||+|+|+|+ |+|++                        |+|+|+++|||++|++.|+++|+++|++...
T Consensus       188 ~GGQ~VNkt~saVri~-H~Ptg------------------------i~v~~q~eRSQ~~Nk~~A~~~L~~~L~~~~~  239 (313)
T PRK08787        188 AGGQHVNKTESAVRIT-HIPTN------------------------TVVACQTGRSQHQNRDNAMKMLAAKLYELEV  239 (313)
T ss_pred             CCCCCcCCEeeEEEEE-ECCCc------------------------EEEEECCcccHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999 99998                        9999999999999999999999999998643

>PRK06746 peptide chain release factor 2; Provisional

Probab=99.96  E-value=5.1e-29  Score=223.02  Aligned_cols=121  Identities=25%  Similarity=0.295  Sum_probs=109.0

Q ss_pred             eeee-eeeccccCCCCCCCccCCCCCCC--CCCCCCcccccccccCCCCcceeEEeecccC--CCCcCCCCeEEEEeccC
Q psy14432         21 FYKS-SISLDKLYPNSSMLLKTPTPDQV--KAPDGLKFNGVIPVKAPDGLKFNGVIPVVIP--RFSYITEELDITYSRSS   95 (189)
Q Consensus        21 ~~~s-~~sld~lyp~s~~~~~~~~~~~~--~~~~~~~~~g~i~~~~~~~~~~~~v~p~~~~--~~~i~~~~l~i~fsRSS   95 (189)
                      .|+| .+.++-  ++.|+.|+.+.++|+  +.| ..+.+|++||    ++++|.|+|.+++  ++.|+++||+++|+|||
T Consensus       135 g~ksa~l~i~G--~~ay~~lk~E~GvHrv~Rvs-p~~s~~rrhT----sfa~V~v~P~~~~~~~i~i~~~dl~~~~~rss  207 (326)
T PRK06746        135 GIKSVTLLIKG--HNAYGYLKAEKGVHRLVRIS-PFDSSGRRHT----SFVSCEVVPEFNDEVEIEVRTEDLKIDTYRAS  207 (326)
T ss_pred             ceEEEEEEEec--cCHHHHHhhccceEEEEecC-CCCCCCCeEe----eEEEEEEecCcCCccccccChHHeEEEEEeCC
Confidence            4555 567776  778888999999998  777 8899999999    4699999999853  68889999999999999


Q ss_pred             CCCccCCCcccceEEEEEecCCCCccCHHHHHHHHHHhcccccCCceEEEEEcCcccHHHHHHHHHHHHHHHHHHhhC
Q psy14432         96 GPGGQHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELNKNRLNKDGYLIIKSDRTRSQQLNLADAMTTLRNMIWKAAK  173 (189)
Q Consensus        96 GPGGQnVNKv~SkV~Lrfhl~s~~wLp~~~r~~L~~~~~~ri~k~G~LvI~s~~~RSQ~~Nr~~Al~kL~~~I~~a~~  173 (189)
                      ||||||||||+|+|+|+ |+|++                        |+|+|+++|||++|++.|+++|+++|++...
T Consensus       208 G~GGQ~vNkt~saVrl~-h~ptg------------------------i~v~~q~~RSQ~~Nk~~A~~~L~akL~~~~~  260 (326)
T PRK06746        208 GAGGQHVNTTDSAVRIT-HTPTN------------------------TVVTCQSERSQIKNREHAMKMLKAKLYQKKL  260 (326)
T ss_pred             CCCCCCccceeeEEEEE-EeCCe------------------------EEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999 99998                        9999999999999999999999999998753

>PRK00578 prfB peptide chain release factor 2; Validated

Probab=99.95  E-value=6.9e-29  Score=225.14  Aligned_cols=119  Identities=25%  Similarity=0.346  Sum_probs=108.4

Q ss_pred             eeeeeccccCCCCCCCccCCCCCCC--CCCCCCcccccccccCCCCcceeEEeecccC--CCCcCCCCeEEEEeccCCCC
Q psy14432         23 KSSISLDKLYPNSSMLLKTPTPDQV--KAPDGLKFNGVIPVKAPDGLKFNGVIPVVIP--RFSYITEELDITYSRSSGPG   98 (189)
Q Consensus        23 ~s~~sld~lyp~s~~~~~~~~~~~~--~~~~~~~~~g~i~~~~~~~~~~~~v~p~~~~--~~~i~~~~l~i~fsRSSGPG   98 (189)
                      ...+.++-  ++.+..|+.+.|+|+  +.| .++.+|++||    ++++|+|+|..++  .+.|+++|++++|+||||||
T Consensus       176 s~~~~i~G--~~a~~~lk~E~GvHrvqrvs-~~~~~~r~ht----s~~~V~vlP~~~~~~~~~i~~~dl~~~~~rssGpG  248 (367)
T PRK00578        176 SATFKIKG--PYAYGYLKSETGVHRLVRIS-PFDSAGRRHT----SFASVEVYPEVDDTIEIEINPKDLRIDTYRSSGAG  248 (367)
T ss_pred             EEEEEEec--cCHHHHHhhccceEEEEecC-CCCCCCceec----ceeeEEecCCCCCccccccChhhEEEEEeeCCCCC
Confidence            34556766  778889999999998  677 8999999999    4699999999875  68899999999999999999


Q ss_pred             ccCCCcccceEEEEEecCCCCccCHHHHHHHHHHhcccccCCceEEEEEcCcccHHHHHHHHHHHHHHHHHHhhC
Q psy14432         99 GQHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELNKNRLNKDGYLIIKSDRTRSQQLNLADAMTTLRNMIWKAAK  173 (189)
Q Consensus        99 GQnVNKv~SkV~Lrfhl~s~~wLp~~~r~~L~~~~~~ri~k~G~LvI~s~~~RSQ~~Nr~~Al~kL~~~I~~a~~  173 (189)
                      |||||||+|+|+|+ |+|++                        |+|+|+++|||++|++.|+++|+++|++...
T Consensus       249 GQ~vNkt~saVrl~-h~ptg------------------------i~v~~~~~RSQ~~Nk~~A~~~L~~kL~~~~~  298 (367)
T PRK00578        249 GQHVNKTDSAVRIT-HIPTG------------------------IVVQCQNERSQHQNKASAMKMLKAKLYELEL  298 (367)
T ss_pred             CCcccceeeEEEEE-ECCCc------------------------EEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999 99998                        9999999999999999999999999998753

>TIGR00020 prfB peptide chain release factor 2

Probab=99.95  E-value=1e-28  Score=223.82  Aligned_cols=121  Identities=26%  Similarity=0.339  Sum_probs=109.2

Q ss_pred             eeee-eeeccccCCCCCCCccCCCCCCC--CCCCCCcccccccccCCCCcceeEEeecccC--CCCcCCCCeEEEEeccC
Q psy14432         21 FYKS-SISLDKLYPNSSMLLKTPTPDQV--KAPDGLKFNGVIPVKAPDGLKFNGVIPVVIP--RFSYITEELDITYSRSS   95 (189)
Q Consensus        21 ~~~s-~~sld~lyp~s~~~~~~~~~~~~--~~~~~~~~~g~i~~~~~~~~~~~~v~p~~~~--~~~i~~~~l~i~fsRSS   95 (189)
                      .|+| .+.++-  ++.++.|+.+.|+|+  +.| ..+.+|++||    ++++|.|+|..++  ++.|+++|++|+|+|||
T Consensus       173 g~ks~~~~i~G--~~ay~~lk~E~GvHrv~rvs-~~~~~~rrht----s~a~V~vlP~~~~~~~~~i~~~d~~~~~~rss  245 (364)
T TIGR00020       173 GIKSVTILIKG--PYAYGYLKSEQGVHRLVRIS-PFDANGRRHT----SFASVFVMPEVDDDIDIEIKPEDLRIDTYRAS  245 (364)
T ss_pred             ceEEEEEEEec--cCHHHHHhhccceEEEEecC-CCCCCCCeEe----eeEEEEEecCCCcccceecccccEEEEEeeCC
Confidence            3554 567776  788889999999998  677 8999999999    4699999999853  68889999999999999


Q ss_pred             CCCccCCCcccceEEEEEecCCCCccCHHHHHHHHHHhcccccCCceEEEEEcCcccHHHHHHHHHHHHHHHHHHhhC
Q psy14432         96 GPGGQHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELNKNRLNKDGYLIIKSDRTRSQQLNLADAMTTLRNMIWKAAK  173 (189)
Q Consensus        96 GPGGQnVNKv~SkV~Lrfhl~s~~wLp~~~r~~L~~~~~~ri~k~G~LvI~s~~~RSQ~~Nr~~Al~kL~~~I~~a~~  173 (189)
                      ||||||||||+|+|+|+ |+|++                        |+|+|+++|||++|++.|+++|+++|++...
T Consensus       246 G~GGQ~VNkt~saVri~-H~ptg------------------------i~v~~q~~RSQ~~Nk~~A~~~L~~kL~~~~~  298 (364)
T TIGR00020       246 GAGGQHVNKTDSAVRIT-HIPTG------------------------IVVQCQNDRSQHKNKDSAMKVLKAKLYELEM  298 (364)
T ss_pred             CCCCccccccceEEEEE-ECCCc------------------------EEEEECCccCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999 99998                        9999999999999999999999999998753

In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc.

>KOG2726|consensus

Probab=99.95  E-value=1.7e-28  Score=222.89  Aligned_cols=120  Identities=23%  Similarity=0.308  Sum_probs=108.1

Q ss_pred             eeeeeeccccCCCCCCCccCCCCCCC--CCCCCCcccccccccCCCCcceeEEeecc--cC-CCCcCCCCeEEEEeccCC
Q psy14432         22 YKSSISLDKLYPNSSMLLKTPTPDQV--KAPDGLKFNGVIPVKAPDGLKFNGVIPVV--IP-RFSYITEELDITYSRSSG   96 (189)
Q Consensus        22 ~~s~~sld~lyp~s~~~~~~~~~~~~--~~~~~~~~~g~i~~~~~~~~~~~~v~p~~--~~-~~~i~~~~l~i~fsRSSG   96 (189)
                      -.+.++++-  -..|+.+..+.++||  +.| .++.+|++||    ++++|+|+|..  ++ ++.++++||+++|.|+||
T Consensus       187 ~~At~~i~G--~~ayg~l~~E~GvHRv~r~p-~~e~~gr~ht----stasV~ViP~~~~~~~~~~~~~~dl~i~~~R~~G  259 (386)
T KOG2726|consen  187 KSATLEIEG--ESAYGYLKFEAGVHRVQRVP-STETSGRRHT----STASVAVIPQPGRDEVDVEIDEKDLRIETFRASG  259 (386)
T ss_pred             eeeeeEecc--cchhheeeccCcccceeecC-Cccccccccc----ccceEEEeccCCCCccceecCchheeEEecccCC
Confidence            345677777  456788899999999  788 8889999999    57999999998  33 688899999999999999


Q ss_pred             CCccCCCcccceEEEEEecCCCCccCHHHHHHHHHHhcccccCCceEEEEEcCcccHHHHHHHHHHHHHHHHHHhhC
Q psy14432         97 PGGQHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELNKNRLNKDGYLIIKSDRTRSQQLNLADAMTTLRNMIWKAAK  173 (189)
Q Consensus        97 PGGQnVNKv~SkV~Lrfhl~s~~wLp~~~r~~L~~~~~~ri~k~G~LvI~s~~~RSQ~~Nr~~Al~kL~~~I~~a~~  173 (189)
                      |||||||||+|+|+|+ |+|+|                        |+|+|+++|||++|++.|+.+|+++|+....
T Consensus       260 ~GGQhvNktdsaVrl~-HiPTG------------------------Ivv~cq~eRSq~~Nr~~A~~~L~akL~~~~~  311 (386)
T KOG2726|consen  260 PGGQHVNKTDSAVRLT-HIPTG------------------------IVVECQEERSQHKNRALALKRLRAKLAVIYR  311 (386)
T ss_pred             CCcccccccccceEEE-eecCc------------------------eEEEeecHHhHHhhHHHHHHHHHHHHHHHHH
Confidence            9999999999999999 99999                        9999999999999999999999999998643

>PRK00591 prfA peptide chain release factor 1; Validated

Probab=99.95  E-value=2.9e-28  Score=220.59  Aligned_cols=119  Identities=26%  Similarity=0.354  Sum_probs=107.4

Q ss_pred             eeeeeccccCCCCCCCccCCCCCCC--CCCCCCcccccccccCCCCcceeEEeecccC-CCCcCCCCeEEEEeccCCCCc
Q psy14432         23 KSSISLDKLYPNSSMLLKTPTPDQV--KAPDGLKFNGVIPVKAPDGLKFNGVIPVVIP-RFSYITEELDITYSRSSGPGG   99 (189)
Q Consensus        23 ~s~~sld~lyp~s~~~~~~~~~~~~--~~~~~~~~~g~i~~~~~~~~~~~~v~p~~~~-~~~i~~~~l~i~fsRSSGPGG   99 (189)
                      .+.+.++-  ++.|+.|+.+.++|+  +.| ..+.+||+||    ++++|.|+|..++ ++.|+++||+|+|+|||||||
T Consensus       163 sa~l~i~G--~~ay~~Lk~E~GvHrv~R~p-~~~s~~R~~t----sfa~V~v~P~~~~~~~~i~~~dl~~~~~RssG~GG  235 (359)
T PRK00591        163 EVIAEISG--DGVYSKLKFESGVHRVQRVP-ATESQGRIHT----SAATVAVLPEAEEVEVEINPKDLRIDTFRSSGAGG  235 (359)
T ss_pred             EEEEEEec--ccHHHHHhhcCeeEEEEeeC-CCCCCCceec----ceEEEEEEcCCCccccccCcccEEEEEEECCCCCC
Confidence            34456665  677788899999998  677 8899999999    4699999999864 788999999999999999999


Q ss_pred             cCCCcccceEEEEEecCCCCccCHHHHHHHHHHhcccccCCceEEEEEcCcccHHHHHHHHHHHHHHHHHHhhC
Q psy14432        100 QHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELNKNRLNKDGYLIIKSDRTRSQQLNLADAMTTLRNMIWKAAK  173 (189)
Q Consensus       100 QnVNKv~SkV~Lrfhl~s~~wLp~~~r~~L~~~~~~ri~k~G~LvI~s~~~RSQ~~Nr~~Al~kL~~~I~~a~~  173 (189)
                      ||||||+|+|+|+ |+|++                        |+|+|+++|||++|++.|+++|+++|.++..
T Consensus       236 Q~VNkt~saVrl~-H~ptG------------------------i~v~~~~eRSQ~~Nk~~Al~~L~~~L~~~~~  284 (359)
T PRK00591        236 QHVNTTDSAVRIT-HLPTG------------------------IVVECQDERSQHKNKAKAMKVLRARLYDAER  284 (359)
T ss_pred             CCccceeeeEEEE-ECCCc------------------------EEEEECCcCCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999 99998                        9999999999999999999999999998753

>PF00472 RF-1: RF-1 domain; InterPro: IPR000352 Peptide chain release factors (RFs) are required for the termination of protein biosynthesis []

Probab=99.94  E-value=6e-27  Score=181.04  Aligned_cols=70  Identities=37%  Similarity=0.629  Sum_probs=65.7

Q ss_pred             CCCCcCCCCeEEEEeccCCCCccCCCcccceEEEEEecCCCCccCHHHHHHHHHHhcccccCCceEEEEEcCcccHHHHH
Q psy14432         78 PRFSYITEELDITYSRSSGPGGQHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELNKNRLNKDGYLIIKSDRTRSQQLNL  157 (189)
Q Consensus        78 ~~~~i~~~~l~i~fsRSSGPGGQnVNKv~SkV~Lrfhl~s~~wLp~~~r~~L~~~~~~ri~k~G~LvI~s~~~RSQ~~Nr  157 (189)
                      ..+.|++++|+++|+|||||||||||||+|+|+|+ |.|++                        |+|+|+++|||..|+
T Consensus         5 ~~~~i~~~dl~~~~~RssGpGGQ~VNk~~s~V~l~-h~ptg------------------------i~v~~~~~Rsq~~Nr   59 (113)
T PF00472_consen    5 KEIDIPEKDLEISFSRSSGPGGQNVNKTNSKVRLR-HIPTG------------------------IVVKCQESRSQHQNR   59 (113)
T ss_dssp             SSSCC-GGGEEEEEEESSSSSSCHHHSSSEEEEEE-ETTTT------------------------EEEEEESSSSHHHHH
T ss_pred             cccccCHHHeEEEEEecCCCCCCcccccCCEEEEE-Eeccc------------------------EEEEEcccCCHHHHH
Confidence            46788999999999999999999999999999999 77888                        999999999999999


Q ss_pred             HHHHHHHHHHHHHhh
Q psy14432        158 ADAMTTLRNMIWKAA  172 (189)
Q Consensus       158 ~~Al~kL~~~I~~a~  172 (189)
                      ++|+++|+++|.++.
T Consensus        60 ~~A~~~L~~~l~~~~   74 (113)
T PF00472_consen   60 EDALEKLREKLDEAY   74 (113)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999999986

At present two classes of RFs can be distinguished. Class I RFs bind to ribosomes that have encountered a stop codon at their decoding site and induce release of the nascent polypeptide. Class II RFs are GTP-binding proteins that interact with class I RFs and enhance class I RF activity. In prokaryotes there are two class I RFs that act in a codon specific manner []: RF-1 (gene prfA) mediates UAA and UAG-dependent termination while RF-2 (gene prfB) mediates UAA and UGA-dependent termination. RF-1 and RF-2 are structurally and evolutionary related proteins which have been shown to be part of a larger family [].; GO: 0003747 translation release factor activity, 0006415 translational termination; PDB: 2JY9_A 1ZBT_A 1GQE_A 3F1G_X 3F1E_X 1RQ0_C 4DH9_Y 2JVA_A 1J26_A 3D5A_X ....

>TIGR03072 release_prfH putative peptide chain release factor H

Probab=99.94  E-value=1.7e-26  Score=194.96  Aligned_cols=116  Identities=22%  Similarity=0.191  Sum_probs=94.3

Q ss_pred             eee-eeeccccCCCCCCCccCCCCCCC---CCCCCCcccccccccCCCCcceeEEeecccCCCCcCCCCeEEEEeccCCC
Q psy14432         22 YKS-SISLDKLYPNSSMLLKTPTPDQV---KAPDGLKFNGVIPVKAPDGLKFNGVIPVVIPRFSYITEELDITYSRSSGP   97 (189)
Q Consensus        22 ~~s-~~sld~lyp~s~~~~~~~~~~~~---~~~~~~~~~g~i~~~~~~~~~~~~v~p~~~~~~~i~~~~l~i~fsRSSGP   97 (189)
                      |+| .+.++-  ++.++.+..+.++|.   +.| .....+|. +    ++++|.|+|.   .++|+++||+++|+|||||
T Consensus        50 ~ksa~~~i~G--~~ay~~l~~~~G~h~~v~~sp-~r~~~~R~-t----s~~~V~v~~~---~~~i~~~dl~~~~~RssGp  118 (200)
T TIGR03072        50 LRSALVSLDG--EAAAALADRWEGTLLWICPSP-YRPHHRRK-N----WFIGVQRFSA---SEEATEDEIRFETLRSSGP  118 (200)
T ss_pred             eEEEEEEEEc--cCHHHHhhcccceEEEEEcCC-CCCCCCee-E----EEEEEEEecC---ccccChhheEEEEEECCCC
Confidence            555 677777  667766667777665   344 33333333 5    3577778873   5678999999999999999


Q ss_pred             CccCCCcccceEEEEEecCCCCccCHHHHHHHHHHhcccccCCceEEEEEcCcccHHHHHHHHHHHHHHHHHHhhC
Q psy14432         98 GGQHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELNKNRLNKDGYLIIKSDRTRSQQLNLADAMTTLRNMIWKAAK  173 (189)
Q Consensus        98 GGQnVNKv~SkV~Lrfhl~s~~wLp~~~r~~L~~~~~~ri~k~G~LvI~s~~~RSQ~~Nr~~Al~kL~~~I~~a~~  173 (189)
                      ||||||||+|+|+|+ |+|++                        |+|+|+++|||++|++.|+++|+++|.+...
T Consensus       119 GGQ~vNkt~saVrl~-h~ptg------------------------i~v~~~~~RSQ~~Nk~~A~~~L~~~l~~~~~  169 (200)
T TIGR03072       119 GGQHVNKTESAVRAT-HLASG------------------------ISVKVQSERSQHANKRLATLLLAVRLADLQQ  169 (200)
T ss_pred             CcccccccceeEEEE-ECCCc------------------------EEEEECCccCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999 99998                        9999999999999999999999999998753

Members of this protein family are bacterial proteins homologous to peptide chain release factors 1 (RF-1, product of the prfA gene), and 2 (RF-2, product of the prfB gene). The member from Escherichia coli K-12, designated prfH, appears to be a pseudogene. This class I release factor is always found as the downstream gene of a two-gene operon.

>PRK08179 prfH peptide chain release factor-like protein; Reviewed

Probab=99.93  E-value=1.1e-25  Score=190.10  Aligned_cols=116  Identities=24%  Similarity=0.232  Sum_probs=91.5

Q ss_pred             eee-eeeccccCCCCCCCccCCCCCCC---CCCCCCcccccccccCCCCcceeEEeecccCCCCcCCCCeEEEEeccCCC
Q psy14432         22 YKS-SISLDKLYPNSSMLLKTPTPDQV---KAPDGLKFNGVIPVKAPDGLKFNGVIPVVIPRFSYITEELDITYSRSSGP   97 (189)
Q Consensus        22 ~~s-~~sld~lyp~s~~~~~~~~~~~~---~~~~~~~~~g~i~~~~~~~~~~~~v~p~~~~~~~i~~~~l~i~fsRSSGP   97 (189)
                      ||| .++++-  ++.+..+....+.|.   +.| .....+|. +    ++++|.|+|   ..+.|+++||+++|+|||||
T Consensus        51 ~ksa~~~i~G--~~a~~~l~~~~G~~~~V~~sp-~~~~~~R~-~----s~~~V~v~~---~~~~i~~~dl~~~~~RssGp  119 (200)
T PRK08179         51 LRSALVSLDG--DNAEALAESWCGTIQWICPSP-YRPHHGRK-N----WFVGIGRFS---ADEEEQSDEIRFETLRSSGP  119 (200)
T ss_pred             eEEEEEEEEc--cCHHHHhhcccCeeEEEecCC-CCCCCCce-E----EEEEEEEeC---CcCccCHHHeEEEEEEccCC
Confidence            555 577776  555555565656554   344 33333343 4    246666765   35688999999999999999


Q ss_pred             CccCCCcccceEEEEEecCCCCccCHHHHHHHHHHhcccccCCceEEEEEcCcccHHHHHHHHHHHHHHHHHHhhC
Q psy14432         98 GGQHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELNKNRLNKDGYLIIKSDRTRSQQLNLADAMTTLRNMIWKAAK  173 (189)
Q Consensus        98 GGQnVNKv~SkV~Lrfhl~s~~wLp~~~r~~L~~~~~~ri~k~G~LvI~s~~~RSQ~~Nr~~Al~kL~~~I~~a~~  173 (189)
                      ||||||||+|+|+|+ |+|++                        |+|+|+++|||++|++.|+++|+++|.+...
T Consensus       120 GGQ~VNkt~saVrl~-h~ptg------------------------i~v~~~~~RSQ~~Nk~~A~~~L~~~L~~~~~  170 (200)
T PRK08179        120 GGQHVNKTDSAVRAT-HLASG------------------------ISVKVQSERSQHANKRLARLLIAWKLEQQQQ  170 (200)
T ss_pred             cccccccccceEEEE-EcCCc------------------------EEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999 99998                        9999999999999999999999999998753

>COG1186 PrfB Protein chain release factor B [Translation, ribosomal structure and biogenesis]

Probab=99.92  E-value=2.2e-26  Score=198.47  Aligned_cols=146  Identities=23%  Similarity=0.212  Sum_probs=125.5

Q ss_pred             eeccccCCCCCCCccCCCCCCC--CCCCCCcccccccccCCCCcceeEEeecccC--CCCcCCCCeEEEEeccCCCCccC
Q psy14432         26 ISLDKLYPNSSMLLKTPTPDQV--KAPDGLKFNGVIPVKAPDGLKFNGVIPVVIP--RFSYITEELDITYSRSSGPGGQH  101 (189)
Q Consensus        26 ~sld~lyp~s~~~~~~~~~~~~--~~~~~~~~~g~i~~~~~~~~~~~~v~p~~~~--~~~i~~~~l~i~fsRSSGPGGQn  101 (189)
                      +.|+-  ++.++-++++.++|+  +.+ .-...|+-|+    +++.+.|+|.+++  .+.|+++||+++|+|||||||||
T Consensus        54 ~~~~g--~~a~g~~~~e~g~hrlvr~S-pf~~~~~R~t----sf~~v~v~p~~~~~i~i~I~~~dl~idt~RASGaGGQh  126 (239)
T COG1186          54 LKIKG--ENAYGYLKTETGVHRLVRIS-PFDSNGRRHT----SFASVEVFPELDISIEIEIPDDDLRIDTYRASGAGGQH  126 (239)
T ss_pred             EEEec--hHHHHHHHhhcceeEEEeec-CCCcCccccc----ceeeeeecCCCCcccceecCccceEEEEEEcCCCCCCc
Confidence            45555  566778899999997  444 4667899999    5688999999865  67889999999999999999999


Q ss_pred             CCcccceEEEEEecCCC-CccCHHHHHHHHHHhcccccCCceEEEEEcCcccHHHHHHHHHHHHHHHHHHhhCCCCCCC
Q psy14432        102 VNSVSTKVDIRFKVNAA-NWLNEDVKKQLIELNKNRLNKDGYLIIKSDRTRSQQLNLADAMTTLRNMIWKAAKPAPQIS  179 (189)
Q Consensus       102 VNKv~SkV~Lrfhl~s~-~wLp~~~r~~L~~~~~~ri~k~G~LvI~s~~~RSQ~~Nr~~Al~kL~~~I~~a~~~pk~~S  179 (189)
                      ||||+|+|+|+ |++++ ...++..|.+++.+...+...+|.|++..+++|+|..|+.+|++++.+.+.++...+..|-
T Consensus       127 VNKt~SAVrlt-h~ptgivv~cq~eRSq~~n~~~a~~~l~~kL~~~~~~~Rsqe~n~~~a~~k~i~wg~qirsyv~~p~  204 (239)
T COG1186         127 VNKTDSAVRLT-HLPTGIVVLCQNERSQHLNKALARKMLKGKLYILAQEKRSQEKNRERALKKLIGWGNQIRSYVLDPY  204 (239)
T ss_pred             cccccccEEEE-EcCCCCEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccccCCCcc
Confidence            99999999999 88888 7789999999999999999999999999999999999999999999999999865555433

>PF10213 MRP-S28: Mitochondrial ribosomal subunit protein ; InterPro: IPR019349 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.18  E-value=2.1e-05  Score=62.62  Aligned_cols=84  Identities=24%  Similarity=0.270  Sum_probs=73.5

Q ss_pred             CCeEEEEeccCCCCccCCCcccceEEEEEecCCCCccCHHHHHHHHHHhcccccC-CceEEEEEcCcccHHHHHHHHHHH
Q psy14432         85 EELDITYSRSSGPGGQHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELNKNRLNK-DGYLIIKSDRTRSQQLNLADAMTT  163 (189)
Q Consensus        85 ~~l~i~fsRSSGPGGQnVNKv~SkV~Lrfhl~s~~wLp~~~r~~L~~~~~~ri~k-~G~LvI~s~~~RSQ~~Nr~~Al~k  163 (189)
                      .-|+++|.-=-|.|    |..+.||.|+|++... .|++.++.+|+...+.|++. .|.|.|+|+..-++.+|++-|.+.
T Consensus         9 ~pl~~~~~~y~~~~----~p~~rkV~l~v~l~dL-~L~~~a~~Kl~~LaG~Ryd~~~d~l~i~sdr~~~~~qN~~~l~~~   83 (127)
T PF10213_consen    9 FPLRFRYTDYMGES----HPANRKVVLQVKLSDL-GLSEKARHKLKLLAGPRYDPETDILKISSDRFPTRAQNKKYLSDL   83 (127)
T ss_pred             CCEEEEEEeecCCC----CCccCEEEEEEEHHhc-CCCHHHHHHHHHHhhcccCCCCCEEEEecccCCCHHHHHHHHHHH
Confidence            34566666555555    7789999999999765 78999999999999999994 789999999999999999999999


Q ss_pred             HHHHHHHhhC
Q psy14432        164 LRNMIWKAAK  173 (189)
Q Consensus       164 L~~~I~~a~~  173 (189)
                      |..+|.+|..
T Consensus        84 l~~L~~EA~~   93 (127)
T PF10213_consen   84 LTRLIHEAKD   93 (127)
T ss_pred             HHHHHHHHhh
Confidence            9999999965

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a conserved region of approx. 125 residues of one of the proteins that makes up the small subunit of the mitochondrial ribosome. In Saccharomyces cerevisiae (Baker's yeast) it is mitochondrial ribosomal protein S24 whereas in humans it is S35.

>KOG3933|consensus

Probab=97.04  E-value=0.0065  Score=54.63  Aligned_cols=87  Identities=31%  Similarity=0.318  Sum_probs=73.6

Q ss_pred             CCCeEEEEeccCCCCccCCCcccceEEEEEecCCCCccCHHHHHHHHHHhcccccC-CceEEEEEcCcccHHHHHHHHHH
Q psy14432         84 TEELDITYSRSSGPGGQHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELNKNRLNK-DGYLIIKSDRTRSQQLNLADAMT  162 (189)
Q Consensus        84 ~~~l~i~fsRSSGPGGQnVNKv~SkV~Lrfhl~s~~wLp~~~r~~L~~~~~~ri~k-~G~LvI~s~~~RSQ~~Nr~~Al~  162 (189)
                      +..+..+++-+||||=-|-|  +-+|.+++++.. ..|++.++.+|+...+.|+++ .+.+.|+||..-...+|+..|+.
T Consensus       148 p~~i~~t~~~~sg~s~~~p~--~RvVvmsvk~~e-L~L~ehq~~klr~Lvg~RY~~~tD~~tissDR~~~r~QN~~y~~~  224 (296)
T KOG3933|consen  148 PISIQSTDYFASGPSIRHPN--SRVVVMSVKVKE-LGLSEHQRKKLRRLVGKRYNKTTDLLTISSDRCEHREQNYDYALY  224 (296)
T ss_pred             cccceeEEEeccCCcccCCC--CceEEEEEEecc-cCccHHHHHHHHHHhhhccCCCCCeEEEeccccchhhHhHHHHHH
Confidence            44667777788888877654  567888877754 589999999999999999997 45899999999999999999999


Q ss_pred             HHHHHHHHhhC
Q psy14432        163 TLRNMIWKAAK  173 (189)
Q Consensus       163 kL~~~I~~a~~  173 (189)
                      .|..++.++..
T Consensus       225 lLt~L~~ES~k  235 (296)
T KOG3933|consen  225 LLTVLYHESGK  235 (296)
T ss_pred             HHHHHHHHhcc
Confidence            99999999844

>COG1186 PrfB Protein chain release factor B [Translation, ribosomal structure and biogenesis]

Probab=92.61  E-value=0.069  Score=46.96  Aligned_cols=32  Identities=28%  Similarity=0.339  Sum_probs=29.0

Q ss_pred             eEEEEEcCcccHHHHHHHHHHHHHHHHHHhhC
Q psy14432        142 YLIIKSDRTRSQQLNLADAMTTLRNMIWKAAK  173 (189)
Q Consensus       142 ~LvI~s~~~RSQ~~Nr~~Al~kL~~~I~~a~~  173 (189)
                      .|++.||.+|||+.|++.|+..|+..|++...
T Consensus       142 givv~cq~eRSq~~n~~~a~~~l~~kL~~~~~  173 (239)
T COG1186         142 GIVVLCQNERSQHLNKALARKMLKGKLYILAQ  173 (239)
T ss_pred             CCEecCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            38999999999999999999999999987643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	189
1j26_A	112	Solution Structure Of A Putative Peptidyl-Trna Hydr		6e-19
2jva_A	108	Nmr Solution Structure Of Peptidyl-Trna Hydrolase D		1e-12
4dh9_Y	140	Crystal Structure Of Yaej Bound To The 70s Ribosome		3e-12
2jy9_A	148	Nmr Structure Of Putative Trna Hydrolase Domain Fro		2e-10

>pdb|1J26|A Chain A, Solution Structure Of A Putative Peptidyl-Trna Hydrolase Domain In A Mouse Hypothetical Protein Length = 112

Iteration: 1
 Score = 90.5 bits (223), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 41/96 (42%), Positives = 70/96 (72%), Gaps = 1/96 (1%)
Query: 81  SYI-TEELDITYSRSSGPGGQHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELNKNRLNK 139
           SYI  + L I+Y RSSGPGGQ+VN V++K ++RF + +A+W+ E V++++   +KN++NK
Sbjct: 15  SYIPLDRLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIEEPVRQKIALTHKNKINK 74
Query: 140 DGYLIIKSDRTRSQQLNLADAMTTLRNMIWKAAKPA 175
            G L++ S+ +R Q  NLA+ +  +R+MI +A+ P+
Sbjct: 75  AGELVLTSESSRYQFRNLAECLQKIRDMIAEASGPS 110

>pdb|2JVA|A Chain A, Nmr Solution Structure Of Peptidyl-Trna Hydrolase Domain Protein From Pseudomonas Syringae Pv. Tomato. Northeast Structural Genomics Consortium Target Psr211 Length = 108

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 60/88 (68%), Gaps = 1/88 (1%)
Query: 86  ELDITYSRSSGPGGQHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELNKNRLNKDGYLII 145
           E+++T  R+ G GGQ+VN VS+ + +RF +NA++ L    K++L+ LN +R+  DG +++
Sbjct: 14  EIELTAIRAQGAGGQNVNKVSSAMHLRFDINASS-LPPFYKERLLALNDSRITSDGVIVL 72
Query: 146 KSDRTRSQQLNLADAMTTLRNMIWKAAK 173
           K+ + R+Q+ N ADA+  L  +I  AAK
Sbjct: 73  KAQQYRTQEQNRADALLRLSELIVNAAK 100

>pdb|4DH9|Y Chain Y, Crystal Structure Of Yaej Bound To The 70s Ribosome Length = 140

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 59/95 (62%), Gaps = 2/95 (2%)
Query: 75  VVIPRFSYITE-ELDITYSRSSGPGGQHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELN 133
           +VI R   I + EL+IT  R+ G GGQHVN  ST + +RF + A++ L E  K++L+  +
Sbjct: 2   IVISRHVAIPDGELEITAIRAQGAGGQHVNKTSTAIHLRFDIRASS-LPEYYKERLLAAS 60
Query: 134 KNRLNKDGYLIIKSDRTRSQQLNLADAMTTLRNMI 168
            + ++ DG ++IK+   RSQ+LN   A+  L  MI
Sbjct: 61  HHLISSDGVIVIKAQEYRSQELNREAALARLVAMI 95

>pdb|2JY9|A Chain A, Nmr Structure Of Putative Trna Hydrolase Domain From Salmonella Typhimurium. Northeast Structural Genomics Consortium Target Str220 Length = 148

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 55/91 (60%), Gaps = 2/91 (2%)
Query: 75  VVIPRFSYITE-ELDITYSRSSGPGGQHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELN 133
           + I R   I + EL+IT  R+ G GGQHVN  S+ + +RF +  A+ L E  K++L+  +
Sbjct: 2   IAISRTVSIADNELEITAIRAQGAGGQHVNKTSSAIHLRFDIR-ASGLPEYYKQRLLTAS 60
Query: 134 KNRLNKDGYLIIKSDRTRSQQLNLADAMTTL 164
            + ++ DG +IIK+   RSQ+LN   A+  L
Sbjct: 61  HHLISDDGVIIIKAQEFRSQELNREAAIARL 91

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	189
1j26_A	112	Immature colon carcinoma transcript 1; peptide cha	2e-31
2jva_A	108	Peptidyl-tRNA hydrolase domain protein; GFT hydrol	2e-31
4dh9_Y	140	YAEJ; ribosome, YAEJ, ribosome stalling, ribosome	5e-31
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-07
2rsm_A	115	Probable peptide chain release factor C12ORF65 HO	2e-04
1zbt_A	371	RF-1, peptide chain release factor 1; peptide chai	2e-04
2ihr_1	365	Peptide chain release factor 2; mixed alpha-beta,	3e-04
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	6e-04
1gqe_A	365	Release factor 2, RF2; protein synthesis, ribosome	8e-04
3d5a_X	354	RF1, peptide chain release factor 1; ribosome, rib	8e-04

>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, immature carcinoma transcript 1; NMR {Mus musculus} SCOP: d.50.4.1 Length = 112

 Score =  109 bits (273), Expect = 2e-31
 Identities = 40/114 (35%), Positives = 71/114 (62%), Gaps = 9/114 (7%)

Query: 62  KAPDGLKFNGVIPVVIPRFSYITEELDITYSRSSGPGGQHVNSVSTKVDIRFKVNAANWL 121
                 + +  IP          + L I+Y RSSGPGGQ+VN V++K ++RF + +A+W+
Sbjct: 6   SGEHAKQASSYIP---------LDRLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWI 56

Query: 122 NEDVKKQLIELNKNRLNKDGYLIIKSDRTRSQQLNLADAMTTLRNMIWKAAKPA 175
            E V++++   +KN++NK G L++ S+ +R Q  NLA+ +  +R+MI +A+ P+
Sbjct: 57  EEPVRQKIALTHKNKINKAGELVLTSESSRYQFRNLAECLQKIRDMIAEASGPS 110

>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural genomics, PSI-2, protein STRU initiative; NMR {Pseudomonas syringae PV} Length = 108

 Score =  109 bits (273), Expect = 2e-31
 Identities = 35/93 (37%), Positives = 59/93 (63%), Gaps = 1/93 (1%)

Query: 85  EELDITYSRSSGPGGQHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELNKNRLNKDGYLI 144
            E+++T  R+ G GGQ+VN VS+ + +RF +NA+  L    K++L+ LN +R+  DG ++
Sbjct: 13  AEIELTAIRAQGAGGQNVNKVSSAMHLRFDINAS-SLPPFYKERLLALNDSRITSDGVIV 71

Query: 145 IKSDRTRSQQLNLADAMTTLRNMIWKAAKPAPQ 177
           +K+ + R+Q+ N ADA+  L  +I  AAK    
Sbjct: 72  LKAQQYRTQEQNRADALLRLSELIVNAAKLEHH 104

>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F alternative rescue factor, ARFB, release factor, rescue of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A Length = 140

 Score =  109 bits (273), Expect = 5e-31
 Identities = 37/103 (35%), Positives = 56/103 (54%), Gaps = 6/103 (5%)

Query: 75  VVIPRFSYITEELDITYSRSSGPGGQHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELNK 134
           V IP       EL+IT  R+ G GGQHVN  ST + +RF + A+  L E  K++L+  + 
Sbjct: 8   VAIPD-----GELEITAIRAQGAGGQHVNKTSTAIHLRFDIRAS-SLPEYYKERLLAASH 61

Query: 135 NRLNKDGYLIIKSDRTRSQQLNLADAMTTLRNMIWKAAKPAPQ 177
           + ++ DG ++IK+   RSQ+LN   A+  L  MI +       
Sbjct: 62  HLISSDGVIVIKAQEYRSQELNREAALARLVAMIKELTTEKKA 104

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 7e-07
 Identities = 26/181 (14%), Positives = 63/181 (34%), Gaps = 29/181 (16%)

Query: 7   FHKLISNQRNVVKRFYKSSISLDKLYPNSSMLLKTPTPDQVKAPDGLKFNGVIPVKAPDG 66
           F  L+S Q  +V++F +  + ++  Y      L +P   + + P        + ++  D 
Sbjct: 68  FWTLLSKQEEMVQKFVEEVLRIN--YK----FLMSPIKTEQRQPSM---MTRMYIEQRDR 118

Query: 67  LKFNGVIPVV---IPRFSYITEELDITYSRSSGPG---------GQHVNSVSTKVDIRFK 114
           L +N         + R     +                      G+   ++   +  + +
Sbjct: 119 L-YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ 177

Query: 115 VNAAN---WLN---EDVKKQLIELNKNRLNK-DGYLIIKSDRTRSQQLNLADAMTTLRNM 167
                   WLN    +  + ++E+ +  L + D     +SD + + +L +      LR +
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237

Query: 168 I 168
           +
Sbjct: 238 L 238

>2rsm_A Probable peptide chain release factor C12ORF65 HO mitochondrial; GGQ domain, translation; NMR {Mus musculus} Length = 115

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 85  EELDITYSRSSGPGGQHVNSVSTKVDI 111
            EL+  + +  GPGGQ  N  S  V +
Sbjct: 46  SELEEQFVKGHGPGGQATNKTSNCVVL 72

>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans} Length = 371

 Score = 39.9 bits (94), Expect = 2e-04
 Identities = 12/27 (44%), Positives = 18/27 (66%)

Query: 85  EELDITYSRSSGPGGQHVNSVSTKVDI 111
           ++L +    +SG GGQ+VN V+T V I
Sbjct: 233 KDLRVDIYHASGAGGQNVNKVATAVRI 259

>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X 2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y Length = 365

 Score = 39.1 bits (92), Expect = 3e-04
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 2/28 (7%)

Query: 85  EELDI-TYSRSSGPGGQHVNSVSTKVDI 111
           EEL I    R+SGPGGQ VN+  + V +
Sbjct: 225 EELRIDVM-RASGPGGQGVNTTDSAVRV 251

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 37.6 bits (86), Expect = 6e-04
 Identities = 9/46 (19%), Positives = 17/46 (36%), Gaps = 17/46 (36%)

Query: 14 QRNVVKRFYKSSISLDKLYPNSSMLLKTPTPDQVKAPDGLKFNGVI 59
          ++  +K+  ++S+   KLY            D   AP  L     +
Sbjct: 18 EKQALKKL-QASL---KLY----------ADDS--AP-ALAIKATM 46

>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z* Length = 365

 Score = 38.4 bits (90), Expect = 8e-04
 Identities = 13/27 (48%), Positives = 16/27 (59%)

Query: 85  EELDITYSRSSGPGGQHVNSVSTKVDI 111
            +L I   R+SG GGQHVN   + V I
Sbjct: 237 ADLRIDVYRASGAGGQHVNRTESAVRI 263

>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V Length = 354

 Score = 38.3 bits (90), Expect = 8e-04
 Identities = 12/27 (44%), Positives = 18/27 (66%)

Query: 85  EELDITYSRSSGPGGQHVNSVSTKVDI 111
           +E+ I   R+SGPGGQ VN+  + V +
Sbjct: 215 DEIRIDVMRASGPGGQGVNTTDSAVRV 241

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	189
1j26_A	112	Immature colon carcinoma transcript 1; peptide cha	100.0
2jva_A	108	Peptidyl-tRNA hydrolase domain protein; GFT hydrol	100.0
4dh9_Y	140	YAEJ; ribosome, YAEJ, ribosome stalling, ribosome	100.0
2b3t_B	360	RF-1, peptide chain release factor 1; translation	99.97
1zbt_A	371	RF-1, peptide chain release factor 1; peptide chai	99.97
3d5a_X	354	RF1, peptide chain release factor 1; ribosome, rib	99.97
1rq0_A	342	RF-1, peptide chain release factor 1; X-RAY, cryst	99.97
1gqe_A	365	Release factor 2, RF2; protein synthesis, ribosome	99.97
2rsm_A	115	Probable peptide chain release factor C12ORF65 HO	99.97
2ihr_1	365	Peptide chain release factor 2; mixed alpha-beta,	99.97

>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, immature carcinoma transcript 1; NMR {Mus musculus} SCOP: d.50.4.1

Probab=100.00  E-value=6.8e-39  Score=247.81  Aligned_cols=95  Identities=40%  Similarity=0.732  Sum_probs=91.1

Q ss_pred             CcCCCCeEEEEeccCCCCccCCCcccceEEEEEecCCCCccCHHHHHHHHHHhcccccCCceEEEEEcCcccHHHHHHHH
Q psy14432         81 SYITEELDITYSRSSGPGGQHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELNKNRLNKDGYLIIKSDRTRSQQLNLADA  160 (189)
Q Consensus        81 ~i~~~~l~i~fsRSSGPGGQnVNKv~SkV~Lrfhl~s~~wLp~~~r~~L~~~~~~ri~k~G~LvI~s~~~RSQ~~Nr~~A  160 (189)
                      .|++++|+++|+|||||||||||||+|||+|+||++++.|||+++|++|++++.+||+++|.|+|+||++|||++|+++|
T Consensus        16 ~I~~~dl~~~~~RssGpGGQnVNKv~SaV~Lrf~i~t~~~Lp~~~k~rl~~~~~~ri~~~G~ivv~~q~~RSQ~~Nr~~A   95 (112)
T 1j26_A           16 YIPLDRLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIEEPVRQKIALTHKNKINKAGELVLTSESSRYQFRNLAEC   95 (112)
T ss_dssp             CCCTTTSEEEEECCCCSSSSCCSSCCCEEEEEEEGGGCTTSCHHHHHHHHHHTTTTBCSSSEEEEEECCCSSHHHHHHHH
T ss_pred             ecChHHeEEEEEECCCCCCCCccCCcceEEEEEeccccccCCHHHHHHHHHhhccccccCCeEEEEECCccCHHHHHHHH
Confidence            34449999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhCCC
Q psy14432        161 MTTLRNMIWKAAKPA  175 (189)
Q Consensus       161 l~kL~~~I~~a~~~p  175 (189)
                      |++|+++|+++..+|
T Consensus        96 l~rL~~~l~~a~~~p  110 (112)
T 1j26_A           96 LQKIRDMIAEASGPS  110 (112)
T ss_dssp             HHHHHHHHHHHHCCS
T ss_pred             HHHHHHHHHHhhcCC
Confidence            999999999998765

>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural genomics, PSI-2, protein STRU initiative; NMR {Pseudomonas syringae PV}

Probab=100.00  E-value=3.2e-37  Score=237.10  Aligned_cols=100  Identities=35%  Similarity=0.543  Sum_probs=94.0

Q ss_pred             ccCCCCcCCCCeEEEEeccCCCCccCCCcccceEEEEEecCCCCccCHHHHHHHHHHhcccccCCceEEEEEcCcccHHH
Q psy14432         76 VIPRFSYITEELDITYSRSSGPGGQHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELNKNRLNKDGYLIIKSDRTRSQQL  155 (189)
Q Consensus        76 ~~~~~~i~~~~l~i~fsRSSGPGGQnVNKv~SkV~Lrfhl~s~~wLp~~~r~~L~~~~~~ri~k~G~LvI~s~~~RSQ~~  155 (189)
                      +.+++.|+++||+++|+|||||||||||||+|||+|+|++.. .|||+++|++|++++.+||+++|.|+|+||++|||.+
T Consensus         4 i~~~i~I~~~dl~~~~~RssGpGGQnVNKv~SaV~L~~d~~~-s~lP~~~k~rl~~~~~~ri~~~G~ivv~~q~~RSQ~~   82 (108)
T 2jva_A            4 ISNNVHLPDAEIELTAIRAQGAGGQNVNKVSSAMHLRFDINA-SSLPPFYKERLLALNDSRITSDGVIVLKAQQYRTQEQ   82 (108)
T ss_dssp             CSSSCEECGGGEEEEECCCTTCSSSSSCCCCCCEEEEEETTT-SCCCHHHHHHHHTCSCTTBCTTCEEEEEECCSSSHHH
T ss_pred             cccccccChHHEEEEEEECCCCCCCCcCCCcceEEEEEEccc-ccCCHHHHHHHHHHhccccccCCcEEEEECCcCCHHH
Confidence            456788999999999999999999999999999999999954 6999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhCCCC
Q psy14432        156 NLADAMTTLRNMIWKAAKPAP  176 (189)
Q Consensus       156 Nr~~Al~kL~~~I~~a~~~pk  176 (189)
                      |+++|+++|+++|+++...|-
T Consensus        83 Nr~~Al~rL~~~l~~a~~~~~  103 (108)
T 2jva_A           83 NRADALLRLSELIVNAAKLEH  103 (108)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSS
T ss_pred             HHHHHHHHHHHHHHHHccCcc
Confidence            999999999999999976553

>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F alternative rescue factor, ARFB, release factor, rescue of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A

Probab=100.00  E-value=3.4e-37  Score=246.21  Aligned_cols=101  Identities=35%  Similarity=0.506  Sum_probs=96.4

Q ss_pred             cccCCCCcCCCCeEEEEeccCCCCccCCCcccceEEEEEecCCCCccCHHHHHHHHHHhcccccCCceEEEEEcCcccHH
Q psy14432         75 VVIPRFSYITEELDITYSRSSGPGGQHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELNKNRLNKDGYLIIKSDRTRSQQ  154 (189)
Q Consensus        75 ~~~~~~~i~~~~l~i~fsRSSGPGGQnVNKv~SkV~Lrfhl~s~~wLp~~~r~~L~~~~~~ri~k~G~LvI~s~~~RSQ~  154 (189)
                      .+.+++.|++++|+|+|+|||||||||||||+|+|+|+|++..+ |||++++++|++.+.+||+++|.|+|+||++|||+
T Consensus         3 ~i~~~i~I~~~el~~~~~RssGpGGQnVNKv~SaV~L~~~~~~s-~lp~~~k~rL~~~~~~rit~~G~ivv~~q~~RSQ~   81 (140)
T 4dh9_Y            3 VISRHVAIPDGELEITAIRAQGAGGQHVNKTSTAIHLRFDIRAS-SLPEYYKERLLAASHHLISSDGVIVIKAQEYRSQE   81 (140)
T ss_dssp             CCCSSSCCCTTCSEEEEECCCSSSSHHHHTTCCCEEEEECCSSS-SSCSHHHHHHHSCCCTTSCSSCCCCEEECCCSSHH
T ss_pred             cccCCCccChHHeEEEEEECCCCCCCccccccceEEEEEecccc-cCCHHHHHHHHHHhccccccCCcEEEEEcCCcCHH
Confidence            45678999999999999999999999999999999999999876 99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCC
Q psy14432        155 LNLADAMTTLRNMIWKAAKPAP  176 (189)
Q Consensus       155 ~Nr~~Al~kL~~~I~~a~~~pk  176 (189)
                      +|+++|+++|+++|.++..+|+
T Consensus        82 ~Nr~~A~~rL~~~l~~a~~~pk  103 (140)
T 4dh9_Y           82 LNREAALARLVAMIKELTTEKK  103 (140)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHHHHHHHHhccCCC
Confidence            9999999999999999987765

>2b3t_B RF-1, peptide chain release factor 1; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: e.38.1.1

Probab=99.97  E-value=6.3e-32  Score=243.07  Aligned_cols=122  Identities=24%  Similarity=0.282  Sum_probs=110.9

Q ss_pred             eeeeeeccccCCCCCCCccCCCCCCC--CCCCCCcccccccccCCCCcceeEEeecccC-C-CCcCCCCeEEEEeccCCC
Q psy14432         22 YKSSISLDKLYPNSSMLLKTPTPDQV--KAPDGLKFNGVIPVKAPDGLKFNGVIPVVIP-R-FSYITEELDITYSRSSGP   97 (189)
Q Consensus        22 ~~s~~sld~lyp~s~~~~~~~~~~~~--~~~~~~~~~g~i~~~~~~~~~~~~v~p~~~~-~-~~i~~~~l~i~fsRSSGP   97 (189)
                      -...+.++-  ++.|+.|+.++++||  +.| .++++||+||    |+++|.|+|++++ . +.|+++||+++|+|||||
T Consensus       160 k~~~~~i~G--~~ayg~Lk~E~GvHRvqRvp-~~es~gR~hT----S~asV~V~Pe~~~~e~i~i~~~dl~i~~~RssG~  232 (360)
T 2b3t_B          160 KEIIAKISG--DGVYGRLKFESGGHRVQRVP-ATESQGRIHT----SACTVAVMPELPDAELPDVNPADLRIDTFRSSGA  232 (360)
T ss_dssp             EEEEEEECS--SSCHHHHGGGCEEEEEEECC-TTCSSCCCEE----EEEEEECCBCCCTTTCCCCCSSSEEEEECCSSCC
T ss_pred             eEEEEEEEc--ccHHHHHHhccCeEEEEecC-CCcccCcCCc----cceEEEEecCcccccccccChhheEEeeecCCCC
Confidence            344567777  889999999999998  788 8999999999    5799999999976 4 779999999999999999


Q ss_pred             CccCCCcccceEEEEEecCCCCccCHHHHHHHHHHhcccccCCceEEEEEcCcccHHHHHHHHHHHHHHHHHHhhCCC
Q psy14432         98 GGQHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELNKNRLNKDGYLIIKSDRTRSQQLNLADAMTTLRNMIWKAAKPA  175 (189)
Q Consensus        98 GGQnVNKv~SkV~Lrfhl~s~~wLp~~~r~~L~~~~~~ri~k~G~LvI~s~~~RSQ~~Nr~~Al~kL~~~I~~a~~~p  175 (189)
                      ||||||||+|+|+|+ |+|++                        |+|+|+++|||++|++.|+++|+++|+++....
T Consensus       233 GGQ~VNkt~saVrl~-hlPtG------------------------ivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~~~  285 (360)
T 2b3t_B          233 GGQHVNTTDSAIRIT-HLPTG------------------------IVVECQDERSQHKNKAKALSVLGARIHAAEMAK  285 (360)
T ss_dssp             CTTTCCCSSEEEEEE-ETTTC------------------------CEEEEEESSCHHHHHHHHHHHHHHHHTTTTTTS
T ss_pred             CCCccccccceEEEE-ECCCe------------------------EEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999 89987                        999999999999999999999999999986543

>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}

Probab=99.97  E-value=5.8e-32  Score=244.04  Aligned_cols=118  Identities=22%  Similarity=0.261  Sum_probs=100.0

Q ss_pred             eeeeeccccCCCCCCCccCCCCCCC--CCCCCCcccccccccCCCCcceeEEeecccC-CCCcCCCCeEEEEeccCCCCc
Q psy14432         23 KSSISLDKLYPNSSMLLKTPTPDQV--KAPDGLKFNGVIPVKAPDGLKFNGVIPVVIP-RFSYITEELDITYSRSSGPGG   99 (189)
Q Consensus        23 ~s~~sld~lyp~s~~~~~~~~~~~~--~~~~~~~~~g~i~~~~~~~~~~~~v~p~~~~-~~~i~~~~l~i~fsRSSGPGG   99 (189)
                      ...+.++-  ++.|+.|+.++++||  +.| .++++||+||    |+++|+|+|++++ .+.|+++||+++|+|||||||
T Consensus       175 sv~~~I~G--~~ayg~Lk~EsGvHRvqRvp-~tes~gR~hT----S~asV~V~Pe~~ev~i~I~~~dl~i~~~RssGpGG  247 (371)
T 1zbt_A          175 EVVAMVSG--QSVYSKLKYESGAHRVQRVP-VTESQGRVHT----STATVLVMPEVEEVEYEIDPKDLRVDIYHASGAGG  247 (371)
T ss_dssp             EEEEEEES--TTHHHHHGGGCEEEEEEECC-TTCSSCCCEE----EEEEEEEEECCCGGGSCCCGGGEEEEEECC-----
T ss_pred             EEEEEEEC--ccHHHHHhhccCeEEEEeec-CCCCCCcccc----cceEEEEeccccccccccCcCcEEEEEecCCCCCC
Confidence            34566776  888999999999998  788 8999999999    4699999999875 678999999999999999999


Q ss_pred             cCCCcccceEEEEEecCCCCccCHHHHHHHHHHhcccccCCceEEEEEcCcccHHHHHHHHHHHHHHHHHHhh
Q psy14432        100 QHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELNKNRLNKDGYLIIKSDRTRSQQLNLADAMTTLRNMIWKAA  172 (189)
Q Consensus       100 QnVNKv~SkV~Lrfhl~s~~wLp~~~r~~L~~~~~~ri~k~G~LvI~s~~~RSQ~~Nr~~Al~kL~~~I~~a~  172 (189)
                      ||||||+|+|+|+ |+|++                        |+|+|+++|||++|++.|+++|+++|+++.
T Consensus       248 Q~VNkt~SaVrlt-hlPtG------------------------ivV~~q~eRSQ~~Nr~~A~~~L~~~L~~~~  295 (371)
T 1zbt_A          248 QNVNKVATAVRII-HLPTN------------------------IKVEMQEERTQQKNRDKAMKIIRARVADHF  295 (371)
T ss_dssp             ----CCCCEEEEE-ETTTT------------------------EEEEECSSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcccccceeEEEE-ECCCe------------------------EEEEECCcCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999 89998                        999999999999999999999999999875

>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V

Probab=99.97  E-value=4.9e-32  Score=243.36  Aligned_cols=119  Identities=24%  Similarity=0.351  Sum_probs=109.5

Q ss_pred             eeeeeccccCCCCCCCccCCCCCCC--CCCCCCcccccccccCCCCcceeEEeecccC-CCCcCCCCeEEEEeccCCCCc
Q psy14432         23 KSSISLDKLYPNSSMLLKTPTPDQV--KAPDGLKFNGVIPVKAPDGLKFNGVIPVVIP-RFSYITEELDITYSRSSGPGG   99 (189)
Q Consensus        23 ~s~~sld~lyp~s~~~~~~~~~~~~--~~~~~~~~~g~i~~~~~~~~~~~~v~p~~~~-~~~i~~~~l~i~fsRSSGPGG   99 (189)
                      ...+.++-  ++.|+.|+.++++||  +.| .++++||+||    |+++|+|+|++++ ++.|+++||+++|+|||||||
T Consensus       157 ~v~~~i~G--~~ayg~Lk~E~GvHRvqRvp-~~es~gR~hT----S~asV~V~P~~~~~~i~i~~~dl~i~~~RssG~GG  229 (354)
T 3d5a_X          157 KVVFEVRG--PGAYGTFKYESGVHRVQRVP-VTETQGRIHT----STATVAVLPKAEEEDFALNMDEIRIDVMRASGPGG  229 (354)
T ss_dssp             EEEEEEES--TTHHHHHGGGCSEEEEEECC-SSCSSCCCEE----EEEEEEEEECCCCCCCCCCGGGEEEEEECCCSCCH
T ss_pred             EEEEEEEC--ccHHHHHHhccCeeEEEecC-CcCCCCcCcc----CceEEEEeccCcccccccCccceEEEeecCCCCCC
Confidence            34566776  888999999999998  788 8999999999    4699999999875 678999999999999999999


Q ss_pred             cCCCcccceEEEEEecCCCCccCHHHHHHHHHHhcccccCCceEEEEEcCcccHHHHHHHHHHHHHHHHHHhhC
Q psy14432        100 QHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELNKNRLNKDGYLIIKSDRTRSQQLNLADAMTTLRNMIWKAAK  173 (189)
Q Consensus       100 QnVNKv~SkV~Lrfhl~s~~wLp~~~r~~L~~~~~~ri~k~G~LvI~s~~~RSQ~~Nr~~Al~kL~~~I~~a~~  173 (189)
                      ||||||+|+|+|+ |+|++                        |+|+|+++|||++|++.|+++|+++|+++..
T Consensus       230 Q~VNkt~SaVrl~-HlPtg------------------------ivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~  278 (354)
T 3d5a_X          230 QGVNTTDSAVRVV-HLPTG------------------------IMVTCQDSRSQIKNREKALMILRSRLLEMKR  278 (354)
T ss_dssp             HHHHHCCCEEEEE-ETTTT------------------------EEEEECCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccceEEEE-EcCCe------------------------EEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999 99998                        9999999999999999999999999999864

>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide release factor 1, ribosome, structural genomics, BSGC structure funded by NIH; 2.65A {Thermotoga maritima} SCOP: e.38.1.1 PDB: 2fvo_A

Probab=99.97  E-value=6e-32  Score=241.84  Aligned_cols=119  Identities=24%  Similarity=0.317  Sum_probs=105.4

Q ss_pred             eeeeeccccCCCCCCCccCCCCCCC--CCCCCCcccccccccCCCCcceeEEeecccC-CCCcCCCCeEEEEeccCCCCc
Q psy14432         23 KSSISLDKLYPNSSMLLKTPTPDQV--KAPDGLKFNGVIPVKAPDGLKFNGVIPVVIP-RFSYITEELDITYSRSSGPGG   99 (189)
Q Consensus        23 ~s~~sld~lyp~s~~~~~~~~~~~~--~~~~~~~~~g~i~~~~~~~~~~~~v~p~~~~-~~~i~~~~l~i~fsRSSGPGG   99 (189)
                      ...+.++-  ++.|+.|+.++++||  +.| .++++||+||    |+++|.|+|++++ ++.|+++||+++|+|||||||
T Consensus       138 s~~~~I~G--~~ayg~Lk~E~GvHRvqRvp-~~es~gR~hT----S~asV~V~Pe~~~~~i~i~~~dl~i~~~RssGpGG  210 (342)
T 1rq0_A          138 EVVFFVKG--KNAYGILKYESGVHRVQRVP-VTESGGRIHT----STATVAVLPEIEEKDIEIRPEDLKIETFRASGHGG  210 (342)
T ss_dssp             EEEEEEES--TTHHHHHGGGCEEEEEEECC-TTSCSCCCEE----EEEEEEEEECCCGGGSCCCGGGEEEEEECCCC---
T ss_pred             EEEEEEEC--cCHHHHHhhccCeEEEEecC-CcccCCCCcc----cceEEEEeccccccccccChhHeEEEeecCCCCCC
Confidence            44567776  888999999999998  788 8999999999    4799999999875 678999999999999999999


Q ss_pred             cCCCcccceEEEEEecCCCCccCHHHHHHHHHHhcccccCCceEEEEEcCcccHHHHHHHHHHHHHHHHHHhhC
Q psy14432        100 QHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELNKNRLNKDGYLIIKSDRTRSQQLNLADAMTTLRNMIWKAAK  173 (189)
Q Consensus       100 QnVNKv~SkV~Lrfhl~s~~wLp~~~r~~L~~~~~~ri~k~G~LvI~s~~~RSQ~~Nr~~Al~kL~~~I~~a~~  173 (189)
                      ||||||+|+|+|+ |+|++                        |+|+|+++|||++|+++|+++|+++|+++..
T Consensus       211 Q~VNKt~SaVrl~-hlPtG------------------------ivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~  259 (342)
T 1rq0_A          211 QYVNKTESAVRIT-HLPTG------------------------IVVSCQNERSQYQNKQTALRILRARLYQLQK  259 (342)
T ss_dssp             -CCSSSSEEEEEE-ETTTC------------------------CEEEEEESSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccceEEEE-ECCCe------------------------EEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999 99987                        9999999999999999999999999998753

>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*

Probab=99.97  E-value=1.1e-31  Score=241.94  Aligned_cols=119  Identities=24%  Similarity=0.320  Sum_probs=108.8

Q ss_pred             eee-eeeccccCCCCCCCccCCCCCCC--CCCCCCcccccccccCCCCcceeEEeecccC--CCCcCCCCeEEEEeccCC
Q psy14432         22 YKS-SISLDKLYPNSSMLLKTPTPDQV--KAPDGLKFNGVIPVKAPDGLKFNGVIPVVIP--RFSYITEELDITYSRSSG   96 (189)
Q Consensus        22 ~~s-~~sld~lyp~s~~~~~~~~~~~~--~~~~~~~~~g~i~~~~~~~~~~~~v~p~~~~--~~~i~~~~l~i~fsRSSG   96 (189)
                      ||+ .+.++-  ++.|+.|+.++++||  +.| .++++||+||    |+++|.|+|++++  ++.|+++||+++|+||||
T Consensus       176 ~Ks~~~~I~G--~~ayg~Lk~EsGvHRvqRvs-~~es~gRrhT----S~asV~V~Pe~~~~v~i~i~~~dl~~~~~RssG  248 (365)
T 1gqe_A          176 IKSVTIKISG--DYAYGWLRTETGVHRLVRKS-PFDSGGRRHT----SFSSAFVYPEVDDDIDIEINPADLRIDVYRASG  248 (365)
T ss_dssp             EEEEEEEEES--TTHHHHHGGGCEEEEEEEEC-TTSSSCCEEE----EEEEEEEEECCBTTBCCCCCGGGEEEEEECCCC
T ss_pred             eeEEEEEEEC--cCHHHHhhhccceEEEEEeC-CCCCcCCCCc----ceeEEEEecCCCcccccccCHHHceEeeecCCC
Confidence            444 566666  888999999999998  778 8999999999    5699999999964  577899999999999999


Q ss_pred             CCccCCCcccceEEEEEecCCCCccCHHHHHHHHHHhcccccCCceEEEEEcCcccHHHHHHHHHHHHHHHHHHhh
Q psy14432         97 PGGQHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELNKNRLNKDGYLIIKSDRTRSQQLNLADAMTTLRNMIWKAA  172 (189)
Q Consensus        97 PGGQnVNKv~SkV~Lrfhl~s~~wLp~~~r~~L~~~~~~ri~k~G~LvI~s~~~RSQ~~Nr~~Al~kL~~~I~~a~  172 (189)
                      |||||||||+|+|+|+ |+|++                        |+|+|+++|||++|++.|+++|+++|+++.
T Consensus       249 ~GGQ~VNkt~saVrl~-HiPtg------------------------ivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~  299 (365)
T 1gqe_A          249 AGGQHVNRTESAVRIT-HIPTG------------------------IVTQCQNDRSQHKNKDQAMKQMKAKLYEVE  299 (365)
T ss_dssp             SSCCSTTSSCCEEEEE-ETTTC------------------------CEEEECSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcccCccceEEEE-ECCCe------------------------EEEEECCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999 99998                        999999999999999999999999999864

>2rsm_A Probable peptide chain release factor C12ORF65 HO mitochondrial; GGQ domain, translation; NMR {Mus musculus}

Probab=99.97  E-value=4.9e-31  Score=204.60  Aligned_cols=95  Identities=24%  Similarity=0.294  Sum_probs=87.5

Q ss_pred             CCCCCCcccccccccCCCCcceeEEeecccC--CCCcCCCCeEEEEeccCCCCccCCCcccceEEEEEecCCCCccCHHH
Q psy14432         48 KAPDGLKFNGVIPVKAPDGLKFNGVIPVVIP--RFSYITEELDITYSRSSGPGGQHVNSVSTKVDIRFKVNAANWLNEDV  125 (189)
Q Consensus        48 ~~~~~~~~~g~i~~~~~~~~~~~~v~p~~~~--~~~i~~~~l~i~fsRSSGPGGQnVNKv~SkV~Lrfhl~s~~wLp~~~  125 (189)
                      +.| .++++|   |    ++++|.|+|+.+.  .+.|+++||+++|+|||||||||||||+|+|+|+ |+|++       
T Consensus        15 rvp-~tes~g---t----s~~~v~v~p~~d~~~~l~I~~~dl~~~~~RssGpGGQ~VNKt~SaVrl~-H~PTG-------   78 (115)
T 2rsm_A           15 EKP-ALLFPG---M----AASTVQVAGRKDYPALLPLNESELEEQFVKGHGPGGQATNKTSNCVVLK-HVPSG-------   78 (115)
T ss_dssp             CCC-CCCCCC---C----CCCCCCCCSCCCCCCSCCCCGGGCEEEECSCCCSCSSSCCCSCCCEEEE-CTTTC-------
T ss_pred             ecC-cccCCc---c----ceEEEEeccccCCCccCCcCHHHeEEEEeeCCCCCccccCccceeEEEe-cCCCC-------
Confidence            566 889999   6    4699999999864  5889999999999999999999999999999999 99998       


Q ss_pred             HHHHHHHhcccccCCceEEEEEcCcccHHHHHHHHHHHHHHHHHHhhCCC
Q psy14432        126 KKQLIELNKNRLNKDGYLIIKSDRTRSQQLNLADAMTTLRNMIWKAAKPA  175 (189)
Q Consensus       126 r~~L~~~~~~ri~k~G~LvI~s~~~RSQ~~Nr~~Al~kL~~~I~~a~~~p  175 (189)
                                       |+|+|+++|||++|+++||++|+++|++....+
T Consensus        79 -----------------ivV~~q~~RSQ~~Nr~~A~~~L~~kL~e~~~~~  111 (115)
T 2rsm_A           79 -----------------IVVKCHQTRSVDQNRKIARKVLQEKVDVFYNSG  111 (115)
T ss_dssp             -----------------CEEEECCSSCHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             -----------------cEEEEcCCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence                             999999999999999999999999999986543

>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X 2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y

Probab=99.97  E-value=4.8e-31  Score=237.72  Aligned_cols=119  Identities=25%  Similarity=0.305  Sum_probs=108.4

Q ss_pred             ee-eeeeccccCCCCCCCccCCCCCCC--CCCCCCcccccccccCCCCcceeEEeecccC--CCCcCCCCeEEEEeccCC
Q psy14432         22 YK-SSISLDKLYPNSSMLLKTPTPDQV--KAPDGLKFNGVIPVKAPDGLKFNGVIPVVIP--RFSYITEELDITYSRSSG   96 (189)
Q Consensus        22 ~~-s~~sld~lyp~s~~~~~~~~~~~~--~~~~~~~~~g~i~~~~~~~~~~~~v~p~~~~--~~~i~~~~l~i~fsRSSG   96 (189)
                      || ..+.++-  ++.|+.|+.++++||  +.| .++++|++||    |+++|.|+|++++  ++.|+++||+++|+||||
T Consensus       164 ~ks~~~~I~G--~~ayg~Lk~E~GvHRvqRvs-~~es~gRrhT----S~asV~V~P~~~~~~~i~i~~~dl~i~~~RssG  236 (365)
T 2ihr_1          164 IDYAQILVKG--ENAYGLLSPEAGVHRLVRPS-PFDASGRRHT----SFAGVEVIPEVDEEVEVVLKPEELRIDVMRASG  236 (365)
T ss_dssp             EEEEEEEEES--TTHHHHHGGGCEEEEEEEEC-TTSSSCCEEE----EEEEEEEEEECCSSSSCCCCGGGEEEEEECCCC
T ss_pred             eEEEEEEEEc--cCHHHhhhhCcCEEEEEEeC-CCCccCCccc----eeEEEEEecCCCcccccccCccceEEEEeecCC
Confidence            44 4566666  888999999999998  788 8999999999    5699999999864  578899999999999999


Q ss_pred             CCccCCCcccceEEEEEecCCCCccCHHHHHHHHHHhcccccCCceEEEEEcCcccHHHHHHHHHHHHHHHHHHhh
Q psy14432         97 PGGQHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELNKNRLNKDGYLIIKSDRTRSQQLNLADAMTTLRNMIWKAA  172 (189)
Q Consensus        97 PGGQnVNKv~SkV~Lrfhl~s~~wLp~~~r~~L~~~~~~ri~k~G~LvI~s~~~RSQ~~Nr~~Al~kL~~~I~~a~  172 (189)
                      |||||||||+|+|+|+ |+|++                        |+|+|+++|||++|++.|+++|+++|++..
T Consensus       237 ~GGQ~VNkt~saVrl~-h~Ptg------------------------ivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~  287 (365)
T 2ihr_1          237 PGGQGVNTTDSAVRVV-HLPTG------------------------ITVTCQTTRSQIKNKELALKILKARLYELE  287 (365)
T ss_dssp             SSCCSGGGSCSEEEEE-ETTTT------------------------EEEEECSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCceecccceEEEEE-EcCCe------------------------EEEEECCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999 89988                        999999999999999999999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	189
d1j26a_	112	d.50.4.1 (A:) Ict1 protein {Mouse (Mus musculus) [	5e-30

>d1j26a_ d.50.4.1 (A:) Ict1 protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 112

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: Peptidyl-tRNA hydrolase domain-like
family: Peptidyl-tRNA hydrolase domain
domain: Ict1 protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  104 bits (260), Expect = 5e-30
 Identities = 41/96 (42%), Positives = 69/96 (71%), Gaps = 1/96 (1%)

Query: 81  SYITE-ELDITYSRSSGPGGQHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELNKNRLNK 139
           SYI    L I+Y RSSGPGGQ+VN V++K ++RF + +A+W+ E V++++   +KN++NK
Sbjct: 15  SYIPLDRLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIEEPVRQKIALTHKNKINK 74

Query: 140 DGYLIIKSDRTRSQQLNLADAMTTLRNMIWKAAKPA 175
            G L++ S+ +R Q  NLA+ +  +R+MI +A+ P+
Sbjct: 75  AGELVLTSESSRYQFRNLAECLQKIRDMIAEASGPS 110

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	189
d1j26a_	112	Ict1 protein {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1gqea_	362	Polypeptide chain release factor 2 (RF2) {Escheric	99.97
d1rq0a_	333	Peptide chain release factor 1, RF1 {Thermotoga ma	99.97
d2b3tb1	344	Peptide chain release factor 1, RF1 {Escherichia c	99.97

>d1j26a_ d.50.4.1 (A:) Ict1 protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: Peptidyl-tRNA hydrolase domain-like
family: Peptidyl-tRNA hydrolase domain
domain: Ict1 protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.6e-37  Score=238.19  Aligned_cols=90  Identities=42%  Similarity=0.792  Sum_probs=88.2

Q ss_pred             CCeEEEEeccCCCCccCCCcccceEEEEEecCCCCccCHHHHHHHHHHhcccccCCceEEEEEcCcccHHHHHHHHHHHH
Q psy14432         85 EELDITYSRSSGPGGQHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELNKNRLNKDGYLIIKSDRTRSQQLNLADAMTTL  164 (189)
Q Consensus        85 ~~l~i~fsRSSGPGGQnVNKv~SkV~Lrfhl~s~~wLp~~~r~~L~~~~~~ri~k~G~LvI~s~~~RSQ~~Nr~~Al~kL  164 (189)
                      ++++|+|+|||||||||||||+|||+|+|++..++|||++++++|++++.+|++++|+|+|+||++|||.+|+++|++||
T Consensus        20 ~~i~~~f~RSsGPGGQ~VNKv~TkV~Lr~~v~~s~~l~~~~~~~l~~~~~~~i~~~g~l~I~s~~~RsQ~~Nr~~a~~kL   99 (112)
T d1j26a_          20 DRLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIEEPVRQKIALTHKNKINKAGELVLTSESSRYQFRNLAECLQKI   99 (112)
T ss_dssp             TTSEEEEECCCCSSSSCCSSCCCEEEEEEEGGGCTTSCHHHHHHHHHHTTTTBCSSSEEEEEECCCSSHHHHHHHHHHHH
T ss_pred             HHeEEEEEEcCCCCCCccceeccEEEEEEeccccccCCHHHHHHHHHHhhhcccCCCeEEEEEcccCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhCC
Q psy14432        165 RNMIWKAAKP  174 (189)
Q Consensus       165 ~~~I~~a~~~  174 (189)
                      +++|.+|..+
T Consensus       100 ~~li~~A~kP  109 (112)
T d1j26a_         100 RDMIAEASGP  109 (112)
T ss_dssp             HHHHHHHHCC
T ss_pred             HHHHHHHhCC
Confidence            9999999853

>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}

class: Multi-domain proteins (alpha and beta)
fold: Release factor
superfamily: Release factor
family: Release factor
domain: Polypeptide chain release factor 2 (RF2)
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=8.3e-33  Score=246.30  Aligned_cols=122  Identities=22%  Similarity=0.290  Sum_probs=111.1

Q ss_pred             eeeeeeeeeccccCCCCCCCccCCCCCCC--CCCCCCcccccccccCCCCcceeEEeecccC--CCCcCCCCeEEEEecc
Q psy14432         19 KRFYKSSISLDKLYPNSSMLLKTPTPDQV--KAPDGLKFNGVIPVKAPDGLKFNGVIPVVIP--RFSYITEELDITYSRS   94 (189)
Q Consensus        19 ~~~~~s~~sld~lyp~s~~~~~~~~~~~~--~~~~~~~~~g~i~~~~~~~~~~~~v~p~~~~--~~~i~~~~l~i~fsRS   94 (189)
                      |-.=...+.+.-  ++.|+.|++++|+||  +.| .++++||+||    |+++|+|+|++++  .+.|+++||+|+++||
T Consensus       171 gG~K~v~~~I~G--~~ayg~Lk~EsGvHRvqRvp-~~es~gr~hT----S~a~V~v~P~~~~~~~~~i~~~dl~i~~~rs  243 (362)
T d1gqea_         171 AGIKSVTIKISG--DYAYGWLRTETGVHRLVRKS-PFDSGGRRHT----SFSSAFVYPEVDDDIDIEINPADLRIDVYRA  243 (362)
T ss_dssp             SSEEEEEEEEES--TTHHHHHGGGCEEEEEEEEC-TTSSSCCEEE----EEEEEEEEECCBTTBCCCCCGGGEEEEEECC
T ss_pred             cceeEEEEEEEC--ccHHHHHHHhcCceeEEEec-ccCCCceEEE----EEEEEEEeecCCCccceecChHHeEEEEeec
Confidence            333446688888  889999999999998  788 9999999999    5799999999854  5778999999999999


Q ss_pred             CCCCccCCCcccceEEEEEecCCCCccCHHHHHHHHHHhcccccCCceEEEEEcCcccHHHHHHHHHHHHHHHHHHhh
Q psy14432         95 SGPGGQHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELNKNRLNKDGYLIIKSDRTRSQQLNLADAMTTLRNMIWKAA  172 (189)
Q Consensus        95 SGPGGQnVNKv~SkV~Lrfhl~s~~wLp~~~r~~L~~~~~~ri~k~G~LvI~s~~~RSQ~~Nr~~Al~kL~~~I~~a~  172 (189)
                      |||||||||||+|+|+|+ |+||+                        |+|+||.+|||++|++.||.+|+++|++..
T Consensus       244 ~g~GGQ~vN~t~savri~-H~ptg------------------------i~v~~q~ersq~~Nk~~A~~~L~~~l~~~~  296 (362)
T d1gqea_         244 SGAGGQHVNRTESAVRIT-HIPTG------------------------IVTQCQNDRSQHKNKDQAMKQMKAKLYEVE  296 (362)
T ss_dssp             CCSSCCSTTSSCCEEEEE-ETTTC------------------------CEEEECSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCccchhhhhceeEEE-ecCch------------------------hHHHhhhcchhhHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999 99999                        999999999999999999999999998753

>d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1 {Thermotoga maritima [TaxId: 2336]}

class: Multi-domain proteins (alpha and beta)
fold: Release factor
superfamily: Release factor
family: Release factor
domain: Peptide chain release factor 1, RF1
species: Thermotoga maritima [TaxId: 2336]

Probab=99.97  E-value=6.5e-32  Score=238.53  Aligned_cols=130  Identities=22%  Similarity=0.269  Sum_probs=111.1

Q ss_pred             hhhcccceeeeeeeeeeccccCCCCCCCccCCCCCCC--CCCCCCcccccccccCCCCcceeEEeecccC-CCCcCCCCe
Q psy14432         11 ISNQRNVVKRFYKSSISLDKLYPNSSMLLKTPTPDQV--KAPDGLKFNGVIPVKAPDGLKFNGVIPVVIP-RFSYITEEL   87 (189)
Q Consensus        11 ~~~~~~~~~~~~~s~~sld~lyp~s~~~~~~~~~~~~--~~~~~~~~~g~i~~~~~~~~~~~~v~p~~~~-~~~i~~~~l   87 (189)
                      ++.+....|-.=..++.+.-  ++.|+.|++++++|+  +.| .++.+|++||    ++++|+|+|+.++ ++.|+++||
T Consensus       126 l~~~~~e~gGiK~v~~~I~G--~~ayg~Lk~E~GvHRv~Rvp-~~~~~~r~hT----s~~~V~v~p~~~~~~v~i~~~dl  198 (333)
T d1rq0a_         126 AEIHETDLGGIREVVFFVKG--KNAYGILKYESGVHRVQRVP-VTESGGRIHT----STATVAVLPEIEEKDIEIRPEDL  198 (333)
T ss_dssp             EEEEECTTSCEEEEEEEEES--TTHHHHHGGGCEEEEEEECC-TTSCSCCCEE----EEEEEEEEECCCGGGSCCCGGGE
T ss_pred             cccccccccccchhheeecc--ccchhhhcccccceeEEEec-ccCCCCceEE----EEEEEEEecccccccccccccce
Confidence            44444444444455677777  899999999999998  788 8999999999    5699999999764 789999999


Q ss_pred             EEEEeccCCCCccCCCcccceEEEEEecCCCCccCHHHHHHHHHHhcccccCCceEEEEEcCcccHHHHHHHHHHHHHHH
Q psy14432         88 DITYSRSSGPGGQHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELNKNRLNKDGYLIIKSDRTRSQQLNLADAMTTLRNM  167 (189)
Q Consensus        88 ~i~fsRSSGPGGQnVNKv~SkV~Lrfhl~s~~wLp~~~r~~L~~~~~~ri~k~G~LvI~s~~~RSQ~~Nr~~Al~kL~~~  167 (189)
                      +|+++|||||||||||||+|+|+|+ |+||+                        |+|+||++|||++|++.||.+|+++
T Consensus       199 ~i~~~RssG~GGQ~VNkt~sAVRit-H~PTG------------------------i~v~~q~eRSQ~~Nk~~A~~~L~~k  253 (333)
T d1rq0a_         199 KIETFRASGHGGQYVNKTESAVRIT-HLPTG------------------------IVVSCQNERSQYQNKQTALRILRAR  253 (333)
T ss_dssp             EEEEECCCC----CCSSSSEEEEEE-ETTTC------------------------CEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred             eEEeecCCccccchhhhhhheeEEE-EcCCc------------------------cEEEcccccccHHHHHHHHHHHHHH
Confidence            9999999999999999999999999 99999                        9999999999999999999999999


Q ss_pred             HHHhh
Q psy14432        168 IWKAA  172 (189)
Q Consensus       168 I~~a~  172 (189)
                      |++..
T Consensus       254 l~~~~  258 (333)
T d1rq0a_         254 LYQLQ  258 (333)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99863

>d2b3tb1 e.38.1.1 (B:7-354) Peptide chain release factor 1, RF1 {Escherichia coli [TaxId: 562]}

class: Multi-domain proteins (alpha and beta)
fold: Release factor
superfamily: Release factor
family: Release factor
domain: Peptide chain release factor 1, RF1
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=1.9e-31  Score=236.13  Aligned_cols=120  Identities=24%  Similarity=0.286  Sum_probs=110.4

Q ss_pred             eeeeeccccCCCCCCCccCCCCCCC--CCCCCCcccccccccCCCCcceeEEeecccC--CCCcCCCCeEEEEeccCCCC
Q psy14432         23 KSSISLDKLYPNSSMLLKTPTPDQV--KAPDGLKFNGVIPVKAPDGLKFNGVIPVVIP--RFSYITEELDITYSRSSGPG   98 (189)
Q Consensus        23 ~s~~sld~lyp~s~~~~~~~~~~~~--~~~~~~~~~g~i~~~~~~~~~~~~v~p~~~~--~~~i~~~~l~i~fsRSSGPG   98 (189)
                      ...+.++-  ++.|+.|+.++++||  +.| .++++|++||    |+++|.|+|.+++  .+.|+++||+|+++||||||
T Consensus       151 ~~~~~i~G--~~ay~~lk~E~GvHRvqRip-~~~~~~r~ht----s~~~v~v~p~~~~~~~~~i~~~dl~i~~~rssg~G  223 (344)
T d2b3tb1         151 EIIAKISG--DGVYGRLKFESGGHRVQRVP-ATESQGRIHT----SACTVAVMPELPDAELPDVNPADLRIDTFRSSGAG  223 (344)
T ss_dssp             EEEEEECS--SSCHHHHGGGCEEEEEEECC-TTCSSCCCEE----EEEEEECCBCCCTTTCCCCCSSSEEEEECCSSCCC
T ss_pred             EEEEEEEc--CcccceeeEeecceEEEeec-cccccccccc----ceeeEeeecccccccccccCcccceEEEecCCCcc
Confidence            34678888  899999999999998  788 8999999999    5699999999864  45789999999999999999


Q ss_pred             ccCCCcccceEEEEEecCCCCccCHHHHHHHHHHhcccccCCceEEEEEcCcccHHHHHHHHHHHHHHHHHHhhCC
Q psy14432         99 GQHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELNKNRLNKDGYLIIKSDRTRSQQLNLADAMTTLRNMIWKAAKP  174 (189)
Q Consensus        99 GQnVNKv~SkV~Lrfhl~s~~wLp~~~r~~L~~~~~~ri~k~G~LvI~s~~~RSQ~~Nr~~Al~kL~~~I~~a~~~  174 (189)
                      |||||||+|+|+|+ |+||+                        |+|+||.+|||++|++.||++|+++|++....
T Consensus       224 GQ~vnkt~sAVRi~-H~ptG------------------------i~v~~q~eRSq~~Nk~~A~~~L~~kl~~~~~~  274 (344)
T d2b3tb1         224 GQHVNTTDSAIRIT-HLPTG------------------------IVVECQDERSQHKNKAKALSVLGARIHAAEMA  274 (344)
T ss_dssp             TTTCCCSSEEEEEE-ETTTC------------------------CEEEEEESSCHHHHHHHHHHHHHHHHTTTTTT
T ss_pred             ccchhhhhceeEEE-EcCCc------------------------eEEEccCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999 99999                        99999999999999999999999999987543