Psyllid ID: psy14445

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250--
MSSIGAGYDLSASQFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYDPGANKRIFHVDTHIGLGSGLISAGRQLAETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEKLKLSTLSMEQLAKEAARIIYVVHDELKDKHFELELAWVGEKTNGKFEMVPQSFLEECENYAKASLQDSDSDNDL
ccccccccccccccccccccHHHHHHHHHHHHccccEEEEEEccEEEEEEEcccccccccccccccEEEEcccEEEEccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccccHHEEEEEEEEccccccEEEEEccccccccccEEEEccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccccEEEEEEEEEccccEEEEccHHHHHHHHHHHHHHcccccccccc
cccccccccccccccccccccHHHHHHHHHHHccccEEEEEcccEEEEEEccccccccEcHHHcccEEEEEccEEEEEEEcHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHEccccccccEEEEEEEEcccEEEEEEEcccccEEEEcEEEEcccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccccEEEEEEEEccccEEEEccHHHHHHHHHHHHHHHHHHcccccc
mssigagydlsasqfspdgrVFQVEYAQKAvensstaiglrgkdGVVIAVEKLVLSklydpgankrifHVDTHIGLGSGLISAGRQLAETAKTEASEYrskyggniplhlLNERVSMYVHAYTLYSMVRPFGASLLLashdktdgpslyvvdpsgvshgyfgCAIGKAKQNAKTEIEKLKLSTLSMEQLAKEAARIIYVVHDELKDKHFELELAWvgektngkfemvpqSFLEECENYAKaslqdsdsdndl
mssigagydlsasqfspdGRVFQVEYAQKAVensstaiglrgkdgvVIAVEKLVLSKLYDPGANKRIFHVDTHIGLGSGLISAGRQLAETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEKLKLSTLSMEQLAKEAARIIYVVHDELKDKHFELELAWVGEKTNGKFEMVPQSFLEECENYAkaslqdsdsdndl
MSSIGAGYDLSASQFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYDPGANKRIFHVDTHIGLGSGLISAGRQLAETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEKLKLSTLSMEQLAKEAARIIYVVHDELKDKHFELELAWVGEKTNGKFEMVPQSFLEECENYAKASLQDSDSDNDL
*******************RVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYDPGANKRIFHVDTHIGLGSGLISAGRQLAE*******EYRSKYGGNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEKLKLSTLSMEQLAKEAARIIYVVHDELKDKHFELELAWVGEKTNGKFEMVPQSFLEEC*****************
*****AG*DLSASQFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYDPGANKRIFHVDTHIGLGSGLISAGRQLAETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEKLKLSTLSMEQLAKEAARIIYVVHDELKDKHFELELAWVGEKTNGKFEMVPQSFLEECE****************
MSSIGAGYDLSASQFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYDPGANKRIFHVDTHIGLGSGLISAGRQ***********YRSKYGGNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEKLKLSTLSMEQLAKEAARIIYVVHDELKDKHFELELAWVGEKTNGKFEMVPQSFLEECENY**************
*********LSASQFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYDPGANKRIFHVDTHIGLGSGLISAGRQLAETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEKLKLSTLSMEQLAKEAARIIYVVHDELKDKHFELELAWVGEKTNGKFEMVPQSFLEECENYAKASLQ********
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MSSIGAGYDLSASQFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYDPGANKRIFHVDTHIGLGSGLISAGRQLAETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEKLKLSTLSMEQLAKEAARIIYVVHDELKDKHFELELAWVGEKTNGKFEMVPQSFLEECENYAKASLQDSDSDNDL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query252 2.2.26 [Sep-21-2011]
P25788255 Proteasome subunit alpha yes N/A 0.996 0.984 0.650 6e-95
Q58DU5255 Proteasome subunit alpha yes N/A 0.996 0.984 0.650 9e-95
O70435255 Proteasome subunit alpha yes N/A 0.996 0.984 0.646 3e-94
P18422255 Proteasome subunit alpha yes N/A 0.996 0.984 0.646 5e-94
P90513252 Proteasome subunit alpha N/A N/A 0.952 0.952 0.590 1e-76
Q9V5C6253 Proteasome subunit alpha yes N/A 0.992 0.988 0.551 4e-74
O23715249 Proteasome subunit alpha yes N/A 0.984 0.995 0.528 1e-73
O24362249 Proteasome subunit alpha N/A N/A 0.984 0.995 0.532 1e-71
Q27563248 Proteasome subunit alpha yes N/A 0.976 0.991 0.504 2e-71
Q9LSU0249 Proteasome subunit alpha yes N/A 0.984 0.995 0.536 2e-71
>sp|P25788|PSA3_HUMAN Proteasome subunit alpha type-3 OS=Homo sapiens GN=PSMA3 PE=1 SV=2 Back     alignment and function desciption
 Score =  347 bits (889), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 164/252 (65%), Positives = 202/252 (80%), Gaps = 1/252 (0%)

Query: 1   MSSIGAGYDLSASQFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYD 60
           MSSIG GYDLSAS FSPDGRVFQVEYA KAVENSSTAIG+R KDGVV  VEKLVLSKLY+
Sbjct: 1   MSSIGTGYDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYE 60

Query: 61  PGANKRIFHVDTHIGLG-SGLISAGRQLAETAKTEASEYRSKYGGNIPLHLLNERVSMYV 119
            G+NKR+F+VD H+G+  +GL++  R LA+ A+ EAS +RS +G NIPL  L +RV+MYV
Sbjct: 61  EGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYV 120

Query: 120 HAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEKL 179
           HAYTLYS VRPFG S +L S+   DG  LY++DPSGVS+GY+GCAIGKA+Q AKTEIEKL
Sbjct: 121 HAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKL 180

Query: 180 KLSTLSMEQLAKEAARIIYVVHDELKDKHFELELAWVGEKTNGKFEMVPQSFLEECENYA 239
           ++  ++   + KE A+IIY+VHDE+KDK FELEL+WVGE TNG+ E+VP+   EE E YA
Sbjct: 181 QMKEMTCRDIVKEVAKIIYIVHDEVKDKAFELELSWVGELTNGRHEIVPKDIREEAEKYA 240

Query: 240 KASLQDSDSDND 251
           K SL++ D  +D
Sbjct: 241 KESLKEEDESDD 252
The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity. Binds to the C-terminus of CDKN1A and thereby mediates its degradation. Negatively regulates the membrane trafficking of the cell-surface thromboxane A2 receptor (TBXA2R) isoform 2.
Homo sapiens (taxid: 9606)
EC: 3EC: .EC: 4EC: .EC: 2EC: 5EC: .EC: 1
>sp|Q58DU5|PSA3_BOVIN Proteasome subunit alpha type-3 OS=Bos taurus GN=PSMA3 PE=1 SV=3 Back     alignment and function description
>sp|O70435|PSA3_MOUSE Proteasome subunit alpha type-3 OS=Mus musculus GN=Psma3 PE=1 SV=3 Back     alignment and function description
>sp|P18422|PSA3_RAT Proteasome subunit alpha type-3 OS=Rattus norvegicus GN=Psma3 PE=1 SV=3 Back     alignment and function description
>sp|P90513|PSA3_ACACA Proteasome subunit alpha type-3 (Fragment) OS=Acanthamoeba castellanii PE=2 SV=1 Back     alignment and function description
>sp|Q9V5C6|PSA3_DROME Proteasome subunit alpha type-3 OS=Drosophila melanogaster GN=Prosalpha7 PE=1 SV=1 Back     alignment and function description
>sp|O23715|PSA3_ARATH Proteasome subunit alpha type-3 OS=Arabidopsis thaliana GN=PAG1 PE=1 SV=2 Back     alignment and function description
>sp|O24362|PSA3_SPIOL Proteasome subunit alpha type-3 OS=Spinacia oleracea GN=PAG1 PE=2 SV=1 Back     alignment and function description
>sp|Q27563|PSA3_DICDI Proteasome subunit alpha type-3 OS=Dictyostelium discoideum GN=psmA3 PE=2 SV=2 Back     alignment and function description
>sp|Q9LSU0|PSA3_ORYSJ Proteasome subunit alpha type-3 OS=Oryza sativa subsp. japonica GN=PAG1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query252
183979272255 similar to CG1519-PA [Papilio xuthus] 0.996 0.984 0.678 8e-98
307171285254 Proteasome subunit alpha type-3 [Campono 0.992 0.984 0.683 2e-97
114051245255 proteasome alpha 3 subunit [Bombyx mori] 0.988 0.976 0.681 5e-97
321476735255 hypothetical protein DAPPUDRAFT_306433 [ 0.996 0.984 0.679 6e-97
357628180255 proteasome alpha 3 subunit [Danaus plexi 0.988 0.976 0.681 1e-96
307202328254 Proteasome subunit alpha type-3 [Harpegn 0.992 0.984 0.667 3e-96
346469677254 hypothetical protein [Amblyomma maculatu 1.0 0.992 0.665 3e-95
209730378255 Proteasome subunit alpha type-3 [Salmo s 0.952 0.941 0.697 3e-95
340719003254 PREDICTED: proteasome subunit alpha type 0.992 0.984 0.664 4e-95
350396055254 PREDICTED: proteasome subunit alpha type 0.992 0.984 0.664 6e-95
>gi|183979272|dbj|BAG30797.1| similar to CG1519-PA [Papilio xuthus] Back     alignment and taxonomy information
 Score =  362 bits (929), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 171/252 (67%), Positives = 206/252 (81%), Gaps = 1/252 (0%)

Query: 1   MSSIGAGYDLSASQFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYD 60
           MSSIG GYDLSASQFSPDGRVFQVEYA KAVENS T IGLRGKDGVV AVEKLV SKLY+
Sbjct: 1   MSSIGTGYDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVEKLVTSKLYE 60

Query: 61  PGANKRIFHVDTHIGLG-SGLISAGRQLAETAKTEASEYRSKYGGNIPLHLLNERVSMYV 119
           PGANKRIFHVD H+G+  +GLIS  RQ+ ETA+TEA  YRS+YG  +PL  LNERVSMY+
Sbjct: 61  PGANKRIFHVDAHVGMAVAGLISDARQIVETARTEAPNYRSQYGIQVPLKYLNERVSMYM 120

Query: 120 HAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEKL 179
           HAYTLYS VRP+G S+++ S  + +GP +Y++DPSGVS  YFGCA+GKAKQ AKTEIEKL
Sbjct: 121 HAYTLYSAVRPYGCSVVMGSWSEHEGPQMYMLDPSGVSFSYFGCAVGKAKQAAKTEIEKL 180

Query: 180 KLSTLSMEQLAKEAARIIYVVHDELKDKHFELELAWVGEKTNGKFEMVPQSFLEECENYA 239
           KL+ +++++L KEAARIIY+VHDELKDK FELEL+WV + T G+ ++VP+    E EN A
Sbjct: 181 KLADMTVKELVKEAARIIYLVHDELKDKQFELELSWVSKDTRGRHQLVPREVASEAENQA 240

Query: 240 KASLQDSDSDND 251
           K +L D +  +D
Sbjct: 241 KQALADIEDSDD 252

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|307171285|gb|EFN63210.1| Proteasome subunit alpha type-3 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|114051245|ref|NP_001040387.1| proteasome alpha 3 subunit [Bombyx mori] gi|95102712|gb|ABF51297.1| proteasome alpha 3 subunit [Bombyx mori] Back     alignment and taxonomy information
>gi|321476735|gb|EFX87695.1| hypothetical protein DAPPUDRAFT_306433 [Daphnia pulex] Back     alignment and taxonomy information
>gi|357628180|gb|EHJ77588.1| proteasome alpha 3 subunit [Danaus plexippus] Back     alignment and taxonomy information
>gi|307202328|gb|EFN81786.1| Proteasome subunit alpha type-3 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|346469677|gb|AEO34683.1| hypothetical protein [Amblyomma maculatum] Back     alignment and taxonomy information
>gi|209730378|gb|ACI66058.1| Proteasome subunit alpha type-3 [Salmo salar] Back     alignment and taxonomy information
>gi|340719003|ref|XP_003397948.1| PREDICTED: proteasome subunit alpha type-3-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|350396055|ref|XP_003484425.1| PREDICTED: proteasome subunit alpha type-3-like [Bombus impatiens] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query252
ZFIN|ZDB-GENE-050913-120255 psma3 "proteasome (prosome, ma 0.992 0.980 0.665 6.7e-88
UNIPROTKB|Q5ZLI2255 PSMA3 "Proteasome subunit alph 0.996 0.984 0.654 2e-86
UNIPROTKB|P25788255 PSMA3 "Proteasome subunit alph 0.996 0.984 0.656 3.3e-86
UNIPROTKB|Q58DU5255 PSMA3 "Proteasome subunit alph 0.996 0.984 0.656 6.9e-86
MGI|MGI:104883255 Psma3 "proteasome (prosome, ma 0.996 0.984 0.652 1.4e-85
UNIPROTKB|E2RKR4255 PSMA3 "Proteasome subunit alph 0.996 0.984 0.652 1.8e-85
UNIPROTKB|F1SSL6255 PSMA3 "Proteasome subunit alph 0.996 0.984 0.652 2.4e-85
RGD|61844255 Psma3 "proteasome (prosome, ma 0.996 0.984 0.652 2.4e-85
UNIPROTKB|J9P849246 PSMA3 "Proteasome subunit alph 0.960 0.983 0.658 2.4e-83
FB|FBgn0023175253 Prosalpha7 "Proteasome alpha7 0.992 0.988 0.551 6.3e-69
ZFIN|ZDB-GENE-050913-120 psma3 "proteasome (prosome, macropain) subunit, alpha type, 3" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 878 (314.1 bits), Expect = 6.7e-88, P = 6.7e-88
 Identities = 169/254 (66%), Positives = 206/254 (81%)

Query:     1 MSSIGAGYDLSASQFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYD 60
             MSSIG GYDLSAS FSPDGRVFQVEYA KAVENSSTAIG+R KDGVV  VEKLVLSKLY+
Sbjct:     1 MSSIGTGYDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYE 60

Query:    61 PGANKRIFHVDTHIGLG-SGLISAGRQLAETAKTEASEYRSKYGGNIPLHLLNERVSMYV 119
              G+NKRIF++D H+G+  +GL++  R L+E A+ EAS +RS YG +IPL  L +RV+MYV
Sbjct:    61 EGSNKRIFNIDRHVGMAVAGLLADARSLSEVAREEASSFRSNYGHDIPLKHLADRVAMYV 120

Query:   120 HAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEKL 179
             HAYTLYS VRPFG S +L S+D+ DGP LY+VDPSG+++GY+GCAIGKAKQ AKTEIEKL
Sbjct:   121 HAYTLYSAVRPFGCSFILGSYDEDDGPQLYMVDPSGIAYGYWGCAIGKAKQAAKTEIEKL 180

Query:   180 KLSTLSMEQLAKEAARIIYVVHDELKDKHFELELAWVGEKTNGKFEMVPQSFLEECENYA 239
             ++  ++  +L KE A+IIY+VHDE+KDK FELEL+WVGE T G+ E+VP+   EE E YA
Sbjct:   181 QMKDMTCRELVKEVAKIIYIVHDEVKDKAFELELSWVGEVTKGRHELVPKDVKEEAEKYA 240

Query:   240 KASLQ---DSDSDN 250
             K SL+   DSD DN
Sbjct:   241 KESLEEEDDSDEDN 254
GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA
GO:0004298 "threonine-type endopeptidase activity" evidence=IEA
GO:0004175 "endopeptidase activity" evidence=IEA
GO:0005839 "proteasome core complex" evidence=IEA
GO:0019773 "proteasome core complex, alpha-subunit complex" evidence=IEA
GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA
GO:0005634 "nucleus" evidence=IEA
GO:0005737 "cytoplasm" evidence=IEA
GO:0016787 "hydrolase activity" evidence=IEA
GO:0008233 "peptidase activity" evidence=IEA
GO:0000502 "proteasome complex" evidence=IEA
GO:0006508 "proteolysis" evidence=IEA
UNIPROTKB|Q5ZLI2 PSMA3 "Proteasome subunit alpha type" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P25788 PSMA3 "Proteasome subunit alpha type-3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q58DU5 PSMA3 "Proteasome subunit alpha type-3" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:104883 Psma3 "proteasome (prosome, macropain) subunit, alpha type 3" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E2RKR4 PSMA3 "Proteasome subunit alpha type" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1SSL6 PSMA3 "Proteasome subunit alpha type" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|61844 Psma3 "proteasome (prosome, macropain) subunit, alpha type 3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|J9P849 PSMA3 "Proteasome subunit alpha type" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
FB|FBgn0023175 Prosalpha7 "Proteasome alpha7 subunit" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q58DU5PSA3_BOVIN3, ., 4, ., 2, 5, ., 10.65070.99600.9843yesN/A
A6VIP0PSA_METM73, ., 4, ., 2, 5, ., 10.33610.91260.8880yesN/A
A6URN9PSA_METVS3, ., 4, ., 2, 5, ., 10.34380.85310.8301yesN/A
O59219PSA_PYRHO3, ., 4, ., 2, 5, ., 10.35890.89280.8653yesN/A
Q18K08PSA_HALWD3, ., 4, ., 2, 5, ., 10.33830.76980.776yesN/A
A3CW55PSA_METMJ3, ., 4, ., 2, 5, ., 10.38180.63880.6708yesN/A
Q27563PSA3_DICDI3, ., 4, ., 2, 5, ., 10.50400.97610.9919yesN/A
O29760PSA_ARCFU3, ., 4, ., 2, 5, ., 10.42940.65870.6747yesN/A
A4FZT6PSA_METM53, ., 4, ., 2, 5, ., 10.33610.91260.8880yesN/A
A7I9C7PSA_METB63, ., 4, ., 2, 5, ., 10.37150.71030.7458yesN/A
P25788PSA3_HUMAN3, ., 4, ., 2, 5, ., 10.65070.99600.9843yesN/A
Q9V122PSA_PYRAB3, ., 4, ., 2, 5, ., 10.39170.80150.7769yesN/A
A9A846PSA_METM63, ., 4, ., 2, 5, ., 10.33190.91260.8880yesN/A
P90513PSA3_ACACA3, ., 4, ., 2, 5, ., 10.59090.95230.9523N/AN/A
Q8PTU1PSA_METMA3, ., 4, ., 2, 5, ., 10.40930.66660.6746yesN/A
C5A2C2PSA_THEGJ3, ., 4, ., 2, 5, ., 10.38110.81340.7884yesN/A
O26782PSA_METTH3, ., 4, ., 2, 5, ., 10.35260.87300.8870yesN/A
Q5JIU9PSA_PYRKO3, ., 4, ., 2, 5, ., 10.38560.81340.7884yesN/A
O24362PSA3_SPIOL3, ., 4, ., 2, 5, ., 10.5320.98410.9959N/AN/A
Q8TYB7PSA_METKA3, ., 4, ., 2, 5, ., 10.38860.75790.7764yesN/A
P18422PSA3_RAT3, ., 4, ., 2, 5, ., 10.64680.99600.9843yesN/A
Q469M6PSA_METBF3, ., 4, ., 2, 5, ., 10.40930.66660.6746yesN/A
Q60177PSA_METJA3, ., 4, ., 2, 5, ., 10.33920.86900.8390yesN/A
B6YSH9PSA_THEON3, ., 4, ., 2, 5, ., 10.39440.80550.7807yesN/A
B8GEZ3PSA_METPE3, ., 4, ., 2, 5, ., 10.39500.62690.6556yesN/A
Q9LSU0PSA3_ORYSJ3, ., 4, ., 2, 5, ., 10.5360.98410.9959yesN/A
C6A459PSA_THESM3, ., 4, ., 2, 5, ., 10.37660.89280.8653yesN/A
O23715PSA3_ARATH3, ., 4, ., 2, 5, ., 10.5280.98410.9959yesN/A
O59770PSA7_SCHPO3, ., 4, ., 2, 5, ., 10.50200.94440.9407yesN/A
Q8U0L6PSA_PYRFU3, ., 4, ., 2, 5, ., 10.39680.73800.7153yesN/A
P21242PSA7_YEAST3, ., 4, ., 2, 5, ., 10.47790.96420.8437yesN/A
Q8TPX5PSA_METAC3, ., 4, ., 2, 5, ., 10.40930.66660.6801yesN/A
Q09583PSA3_CAEEL3, ., 4, ., 2, 5, ., 10.48600.98800.996yesN/A
Q6M0L9PSA_METMP3, ., 4, ., 2, 5, ., 10.33610.91260.8880yesN/A
O70435PSA3_MOUSE3, ., 4, ., 2, 5, ., 10.64680.99600.9843yesN/A
Q9V5C6PSA3_DROME3, ., 4, ., 2, 5, ., 10.55150.99200.9881yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.25.10.991
3rd Layer3.4.250.976

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query252
cd03751212 cd03751, proteasome_alpha_type_3, proteasome_alpha 1e-129
cd01911209 cd01911, proteasome_alpha, proteasome alpha subuni 2e-99
PRK03996241 PRK03996, PRK03996, proteasome subunit alpha; Prov 7e-55
pfam00227188 pfam00227, Proteasome, Proteasome subunit 7e-55
COG0638236 COG0638, PRE1, 20S proteasome, alpha and beta subu 1e-53
TIGR03633224 TIGR03633, arc_protsome_A, proteasome endopeptidas 2e-51
cd03756211 cd03756, proteasome_alpha_archeal, proteasome_alph 2e-50
cd01906182 cd01906, proteasome_protease_HslV, proteasome_prot 3e-48
cd03754215 cd03754, proteasome_alpha_type_6, proteasome_alpha 2e-45
cd03753213 cd03753, proteasome_alpha_type_5, proteasome_alpha 3e-43
cd03750227 cd03750, proteasome_alpha_type_2, proteasome_alpha 2e-42
cd03755207 cd03755, proteasome_alpha_type_7, proteasome_alpha 5e-42
cd03749211 cd03749, proteasome_alpha_type_1, proteasome_alpha 2e-40
cd03752213 cd03752, proteasome_alpha_type_4, proteasome_alpha 2e-37
PTZ00246253 PTZ00246, PTZ00246, proteasome subunit alpha; Prov 1e-36
cd01901164 cd01901, Ntn_hydrolase, The Ntn hydrolases (N-term 6e-30
cd03764188 cd03764, proteasome_beta_archeal, Archeal proteaso 7e-15
TIGR03634185 TIGR03634, arc_protsome_B, proteasome endopeptidas 7e-14
cd01912189 cd01912, proteasome_beta, proteasome beta subunit 3e-10
pfam1058423 pfam10584, Proteasome_A_N, Proteasome subunit A N- 1e-09
smart0094823 smart00948, Proteasome_A_N, Proteasome subunit A N 3e-08
>gnl|CDD|239720 cd03751, proteasome_alpha_type_3, proteasome_alpha_type_3 Back     alignment and domain information 
 Score =  364 bits (937), Expect = e-129
 Identities = 146/213 (68%), Positives = 174/213 (81%), Gaps = 2/213 (0%)

Query: 5   GAGYDLSASQFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYDPGAN 64
           G GYDLSAS FSPDGRVFQVEYA KAVENS TAIG+R KDGVV+AVEKLV SKLY+PG+N
Sbjct: 1   GTGYDLSASTFSPDGRVFQVEYANKAVENSGTAIGIRCKDGVVLAVEKLVTSKLYEPGSN 60

Query: 65  KRIFHVDTHIGL-GSGLISAGRQLAETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYT 123
           KRIF+VD HIG+  +GL++ GR L   A+ EA  YR  YG  IP+ +L +RV+MY+HAYT
Sbjct: 61  KRIFNVDRHIGIAVAGLLADGRHLVSRAREEAENYRDNYGTPIPVKVLADRVAMYMHAYT 120

Query: 124 LYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEKLKLST 183
           LYS VRPFG S+LL  +D  DGP LY+++PSGVS+GYFGCAIGK KQ AKTE+EKLK S 
Sbjct: 121 LYSSVRPFGCSVLLGGYDS-DGPQLYMIEPSGVSYGYFGCAIGKGKQAAKTELEKLKFSE 179

Query: 184 LSMEQLAKEAARIIYVVHDELKDKHFELELAWV 216
           L+  +  KEAA+IIY+VHDE+KDK FELEL+WV
Sbjct: 180 LTCREAVKEAAKIIYIVHDEIKDKAFELELSWV 212

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 212
>gnl|CDD|238892 cd01911, proteasome_alpha, proteasome alpha subunit Back     alignment and domain information
>gnl|CDD|235192 PRK03996, PRK03996, proteasome subunit alpha; Provisional Back     alignment and domain information
>gnl|CDD|215805 pfam00227, Proteasome, Proteasome subunit Back     alignment and domain information
>gnl|CDD|223711 COG0638, PRE1, 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|163366 TIGR03633, arc_protsome_A, proteasome endopeptidase complex, archaeal, alpha subunit Back     alignment and domain information
>gnl|CDD|239725 cd03756, proteasome_alpha_archeal, proteasome_alpha_archeal Back     alignment and domain information
>gnl|CDD|238887 cd01906, proteasome_protease_HslV, proteasome_protease_HslV Back     alignment and domain information
>gnl|CDD|239723 cd03754, proteasome_alpha_type_6, proteasome_alpha_type_6 Back     alignment and domain information
>gnl|CDD|239722 cd03753, proteasome_alpha_type_5, proteasome_alpha_type_5 Back     alignment and domain information
>gnl|CDD|239719 cd03750, proteasome_alpha_type_2, proteasome_alpha_type_2 Back     alignment and domain information
>gnl|CDD|239724 cd03755, proteasome_alpha_type_7, proteasome_alpha_type_7 Back     alignment and domain information
>gnl|CDD|239718 cd03749, proteasome_alpha_type_1, proteasome_alpha_type_1 Back     alignment and domain information
>gnl|CDD|239721 cd03752, proteasome_alpha_type_4, proteasome_alpha_type_4 Back     alignment and domain information
>gnl|CDD|173491 PTZ00246, PTZ00246, proteasome subunit alpha; Provisional Back     alignment and domain information
>gnl|CDD|238884 cd01901, Ntn_hydrolase, The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid Back     alignment and domain information
>gnl|CDD|239733 cd03764, proteasome_beta_archeal, Archeal proteasome, beta subunit Back     alignment and domain information
>gnl|CDD|234287 TIGR03634, arc_protsome_B, proteasome endopeptidase complex, archaeal, beta subunit Back     alignment and domain information
>gnl|CDD|238893 cd01912, proteasome_beta, proteasome beta subunit Back     alignment and domain information
>gnl|CDD|204518 pfam10584, Proteasome_A_N, Proteasome subunit A N-terminal signature Back     alignment and domain information
>gnl|CDD|198016 smart00948, Proteasome_A_N, Proteasome subunit A N-terminal signature Add an annotation Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 252
KOG0184|consensus254 100.0
PTZ00246253 proteasome subunit alpha; Provisional 100.0
cd03750227 proteasome_alpha_type_2 proteasome_alpha_type_2. T 100.0
PRK03996241 proteasome subunit alpha; Provisional 100.0
cd03751212 proteasome_alpha_type_3 proteasome_alpha_type_3. T 100.0
cd03752213 proteasome_alpha_type_4 proteasome_alpha_type_4. T 100.0
KOG0176|consensus241 100.0
cd03755207 proteasome_alpha_type_7 proteasome_alpha_type_7. T 100.0
TIGR03633224 arc_protsome_A proteasome endopeptidase complex, a 100.0
cd03754215 proteasome_alpha_type_6 proteasome_alpha_type_6. T 100.0
cd03749211 proteasome_alpha_type_1 proteasome_alpha_type_1. T 100.0
cd03756211 proteasome_alpha_archeal proteasome_alpha_archeal. 100.0
COG0638236 PRE1 20S proteasome, alpha and beta subunits [Post 100.0
cd01911209 proteasome_alpha proteasome alpha subunit. The 20S 100.0
cd03753213 proteasome_alpha_type_5 proteasome_alpha_type_5. T 100.0
KOG0178|consensus249 100.0
KOG0181|consensus233 100.0
KOG0182|consensus246 100.0
KOG0183|consensus249 100.0
KOG0863|consensus264 100.0
TIGR03691228 20S_bact_alpha proteasome, alpha subunit, bacteria 100.0
TIGR03690219 20S_bact_beta proteasome, beta subunit, bacterial 100.0
cd03758193 proteasome_beta_type_2 proteasome beta type-2 subu 100.0
cd03760197 proteasome_beta_type_4 proteasome beta type-4 subu 100.0
cd03759195 proteasome_beta_type_3 proteasome beta type-3 subu 100.0
PTZ00488247 Proteasome subunit beta type-5; Provisional 100.0
cd03761188 proteasome_beta_type_5 proteasome beta type-5 subu 100.0
cd03757212 proteasome_beta_type_1 proteasome beta type-1 subu 100.0
cd03765236 proteasome_beta_bacterial Bacterial proteasome, be 100.0
TIGR03634185 arc_protsome_B proteasome endopeptidase complex, a 100.0
cd03762188 proteasome_beta_type_6 proteasome beta type-6 subu 100.0
PF00227190 Proteasome: Proteasome subunit; InterPro: IPR00135 100.0
cd03764188 proteasome_beta_archeal Archeal proteasome, beta s 100.0
cd03763189 proteasome_beta_type_7 proteasome beta type-7 subu 100.0
cd01912189 proteasome_beta proteasome beta subunit. The 20S p 100.0
cd01906182 proteasome_protease_HslV proteasome_protease_HslV. 100.0
KOG0177|consensus200 100.0
KOG0174|consensus224 100.0
KOG0175|consensus285 100.0
KOG0179|consensus235 100.0
KOG0173|consensus271 100.0
KOG0185|consensus256 99.98
PRK05456172 ATP-dependent protease subunit HslV; Provisional 99.97
cd01901164 Ntn_hydrolase The Ntn hydrolases (N-terminal nucle 99.97
cd01913171 protease_HslV Protease HslV and the ATPase/chapero 99.97
KOG0180|consensus204 99.97
TIGR03692171 ATP_dep_HslV ATP-dependent protease HslVU, peptida 99.97
PF1058423 Proteasome_A_N: Proteasome subunit A N-terminal si 99.55
COG3484255 Predicted proteasome-type protease [Posttranslatio 98.99
COG5405178 HslV ATP-dependent protease HslVU (ClpYQ), peptida 98.94
PF09894194 DUF2121: Uncharacterized protein conserved in arch 94.75
COG4079293 Uncharacterized protein conserved in archaea [Func 91.93
>KOG0184|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.6e-67  Score=430.48  Aligned_cols=250  Identities=64%  Similarity=1.015  Sum_probs=244.5

Q ss_pred             CCCCCCCCCCCccccCCCCccchhhhHHHHHhcCCcEEEEEeCCEEEEEEeccccCCcccCCCceeEEEecCeeEEe-ec
Q psy14445          1 MSSIGAGYDLSASQFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYDPGANKRIFHVDTHIGLG-SG   79 (252)
Q Consensus         1 ms~~~~~yd~~~t~fspeGrl~Qveya~~av~~G~t~vgi~~~dgVvlaad~~~~~~~~~~~~~~Ki~~i~~~i~~~-sG   79 (252)
                      ||||.+|||+..++|||+||+||||||+|||.+|+|+|||||||||||++||..+++++.+...+|||.|++||+|+ +|
T Consensus         1 MSsIGtGyDls~s~fSpdGrvfQveYA~KAven~~T~IGIk~kdGVVl~vEKli~SkLy~p~sn~ri~~V~r~iG~avaG   80 (254)
T KOG0184|consen    1 MSSIGTGYDLSASTFSPDGRVFQVEYAQKAVENSGTCIGIKCKDGVVLAVEKLITSKLYEPGSNERIFSVDRHIGMAVAG   80 (254)
T ss_pred             CCcccccccccceeeCCCCceehHHHHHHHHhcCCcEEEEecCCeEEEEEeeeecccccccCCCCceEeecccccEEEec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             chhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCccCceeeEEEEEEeCCCCceEEEECCCCceec
Q psy14445         80 LISAGRQLAETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHG  159 (252)
Q Consensus        80 ~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~  159 (252)
                      +.+|.+.+..++|.++..|+.+|+.|+|...++++++++.|.||.++..||||++.|+++||. +|||||.++|+|.++.
T Consensus        81 l~~Dg~~l~~~ar~ea~~~~~~y~~piP~~~la~rva~yvh~~Tly~~vRpfG~~~~~~~yd~-~g~~LymiepSG~~~~  159 (254)
T KOG0184|consen   81 LIPDGRHLVNRARDEAASWRKNYGDPIPGKHLADRVADYVHAFTLYSSVRPFGASTILGSYDD-EGPQLYMIEPSGSSYG  159 (254)
T ss_pred             cccchHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHhhhheeehhhccccccceEEEEEEeC-CCceEEEEcCCCCccc
Confidence            999999999999999999999999999999999999999999999999999999999999996 9999999999999999


Q ss_pred             ccEEEecCChhhhhHHHHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCcceEEEEEEEecCCCeEEecChhHHHHHHHHH
Q psy14445        160 YFGCAIGKAKQNAKTEIEKLKLSTLSMEQLAKEAARIIYVVHDELKDKHFELELAWVGEKTNGKFEMVPQSFLEECENYA  239 (252)
Q Consensus       160 ~~~~a~G~g~~~~~~~Le~~~~~~~s~~eai~la~~al~~~~~~~~~~~~~iev~~i~~~~~~~~~~~~~~~~~~~~~~~  239 (252)
                      |+++|+|.|.|.+++.|||....+|+++|+++.+.+.|+.++|+.+.+.|+|||+|+..+|+|.|+.+|.+++++..+++
T Consensus       160 Y~~aaiGKgrq~aKtElEKL~~~~mt~~e~VkeaakIiY~~HDe~KdK~feiEm~wvg~eTnG~h~~vp~el~~ea~~~a  239 (254)
T KOG0184|consen  160 YKGAAIGKGRQAAKTELEKLKIDEMTCKELVKEAAKIIYKVHDENKDKEFEIEMGWVGEETNGLHEKVPSELLEEAEKYA  239 (254)
T ss_pred             eeeeeccchhHHHHHHHHhcccccccHHHHHHHHHheeEeecccccCcceEEEEEEEEeecCCccccCcHHHHHHHHHHH
Confidence            99999999999999999999888999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcccCCC-CCCC
Q psy14445        240 KASLQDSD-SDND  251 (252)
Q Consensus       240 ~~~~~~~~-~~~~  251 (252)
                      ...++.+| |+++
T Consensus       240 ~~s~~~~d~sd~~  252 (254)
T KOG0184|consen  240 KASLDEEDESDIY  252 (254)
T ss_pred             Hhhhccccchhhc
Confidence            99998888 6664

>PTZ00246 proteasome subunit alpha; Provisional Back     alignment and domain information
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2 Back     alignment and domain information
>PRK03996 proteasome subunit alpha; Provisional Back     alignment and domain information
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3 Back     alignment and domain information
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4 Back     alignment and domain information
>KOG0176|consensus Back     alignment and domain information
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7 Back     alignment and domain information
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit Back     alignment and domain information
>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6 Back     alignment and domain information
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1 Back     alignment and domain information
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal Back     alignment and domain information
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd01911 proteasome_alpha proteasome alpha subunit Back     alignment and domain information
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5 Back     alignment and domain information
>KOG0178|consensus Back     alignment and domain information
>KOG0181|consensus Back     alignment and domain information
>KOG0182|consensus Back     alignment and domain information
>KOG0183|consensus Back     alignment and domain information
>KOG0863|consensus Back     alignment and domain information
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type Back     alignment and domain information
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type Back     alignment and domain information
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit Back     alignment and domain information
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit Back     alignment and domain information
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit Back     alignment and domain information
>PTZ00488 Proteasome subunit beta type-5; Provisional Back     alignment and domain information
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit Back     alignment and domain information
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit Back     alignment and domain information
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit Back     alignment and domain information
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit Back     alignment and domain information
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit Back     alignment and domain information
>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins Back     alignment and domain information
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit Back     alignment and domain information
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit Back     alignment and domain information
>cd01912 proteasome_beta proteasome beta subunit Back     alignment and domain information
>cd01906 proteasome_protease_HslV proteasome_protease_HslV Back     alignment and domain information
>KOG0177|consensus Back     alignment and domain information
>KOG0174|consensus Back     alignment and domain information
>KOG0175|consensus Back     alignment and domain information
>KOG0179|consensus Back     alignment and domain information
>KOG0173|consensus Back     alignment and domain information
>KOG0185|consensus Back     alignment and domain information
>PRK05456 ATP-dependent protease subunit HslV; Provisional Back     alignment and domain information
>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid Back     alignment and domain information
>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome Back     alignment and domain information
>KOG0180|consensus Back     alignment and domain information
>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit Back     alignment and domain information
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3 Back     alignment and domain information
>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function Back     alignment and domain information
>COG4079 Uncharacterized protein conserved in archaea [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query252
1iru_G254 Crystal Structure Of The Mammalian 20s Proteasome A 2e-95
3unb_F255 Mouse Constitutive 20s Proteasome In Complex With P 3e-95
1z7q_G288 Crystal Structure Of The 20s Proteasome From Yeast 8e-57
1g0u_F248 A Gated Channel Into The Proteasome Core Particle L 1e-56
1fnt_G287 Crystal Structure Of The 20s Proteasome From Yeast 4e-56
1ryp_G244 Crystal Structure Of The 20s Proteasome From Yeast 1e-54
3oeu_F242 Structure Of Yeast 20s Open-Gate Proteasome With Co 4e-54
3h4p_A264 Proteasome 20s Core Particle From Methanocaldococcu 1e-31
1j2p_A246 Alpha-Ring From The Proteasome From Archaeoglobus F 7e-29
1j2q_A237 20s Proteasome In Complex With Calpain-inhibitor I 2e-28
1g0u_D241 A Gated Channel Into The Proteasome Core Particle L 3e-28
3unb_D241 Mouse Constitutive 20s Proteasome In Complex With P 4e-27
1iru_E241 Crystal Structure Of The Mammalian 20s Proteasome A 8e-27
2z5c_C262 Crystal Structure Of A Novel Chaperone Complex For 8e-27
1pma_A233 Proteasome From Thermoplasma Acidophilum Length = 2 9e-27
4g4s_E261 Structure Of Proteasome-Pba1-Pba2 Complex Length = 9e-27
3jrm_A227 Crystal Structure Of Archaeal 20s Proteasome In Com 9e-27
1fnt_E260 Crystal Structure Of The 20s Proteasome From Yeast 9e-27
1vsy_E250 Proteasome Activator Complex Length = 250 1e-26
2ku1_A237 Dynamic Regulation Of Archaeal Proteasome Gate Open 1e-26
1iru_A246 Crystal Structure Of The Mammalian 20s Proteasome A 2e-26
3unb_G246 Mouse Constitutive 20s Proteasome In Complex With P 3e-26
3une_C248 Mouse Constitutive 20s Proteasome Length = 248 4e-26
1ryp_A243 Crystal Structure Of The 20s Proteasome From Yeast 5e-26
1ryp_E242 Crystal Structure Of The 20s Proteasome From Yeast 6e-26
1yar_A233 Structure Of Archeabacterial 20s Proteasome Mutant 6e-26
1iru_D248 Crystal Structure Of The Mammalian 20s Proteasome A 6e-26
1yau_A233 Structure Of Archeabacterial 20s Proteasome- Pa26 C 1e-25
2ku2_A237 Dynamic Regulation Of Archaeal Proteasome Gate Open 2e-25
3unb_C248 Mouse Constitutive 20s Proteasome In Complex With P 2e-25
1g0u_G252 A Gated Channel Into The Proteasome Core Particle L 7e-25
1g0u_C243 A Gated Channel Into The Proteasome Core Particle L 3e-24
1ryp_D241 Crystal Structure Of The 20s Proteasome From Yeast 4e-24
1fnt_D254 Crystal Structure Of The 20s Proteasome From Yeast 4e-24
1z7q_C258 Crystal Structure Of The 20s Proteasome From Yeast 2e-23
1g0u_B245 A Gated Channel Into The Proteasome Core Particle L 2e-23
1ryp_C244 Crystal Structure Of The 20s Proteasome From Yeast 3e-23
1iru_B233 Crystal Structure Of The Mammalian 20s Proteasome A 5e-23
3unb_A234 Mouse Constitutive 20s Proteasome In Complex With P 5e-23
3oeu_B235 Structure Of Yeast 20s Open-Gate Proteasome With Co 2e-22
1ryp_B250 Crystal Structure Of The 20s Proteasome From Yeast 5e-22
1vsy_C232 Proteasome Activator Complex Length = 232 1e-21
1vsy_D227 Proteasome Activator Complex Length = 227 1e-18
1iru_C261 Crystal Structure Of The Mammalian 20s Proteasome A 2e-18
3unb_B261 Mouse Constitutive 20s Proteasome In Complex With P 3e-18
3unb_E263 Mouse Constitutive 20s Proteasome In Complex With P 3e-18
1iru_F263 Crystal Structure Of The Mammalian 20s Proteasome A 4e-18
1vsy_B231 Proteasome Activator Complex Length = 231 6e-18
1fnt_F234 Crystal Structure Of The 20s Proteasome From Yeast 7e-15
4g4s_F235 Structure Of Proteasome-Pba1-Pba2 Complex Length = 7e-15
1ryp_F233 Crystal Structure Of The 20s Proteasome From Yeast 7e-15
1g0u_E234 A Gated Channel Into The Proteasome Core Particle L 4e-14
3sdi_E233 Structure Of Yeast 20s Open-Gate Proteasome With Co 5e-14
1ya7_H217 Implications For Interactions Of Proteasome With Pa 3e-05
1pma_B211 Proteasome From Thermoplasma Acidophilum Length = 2 3e-05
1j2q_H202 20s Proteasome In Complex With Calpain-inhibitor I 1e-04
3c91_H203 Thermoplasma Acidophilum 20s Proteasome With An Ope 2e-04
>pdb|1IRU|G Chain G, Crystal Structure Of The Mammalian 20s Proteasome At 2.75 A Resolution Length = 254 Back     alignment and structure 
Iteration: 1

 Score =  345 bits (884), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 163/251 (64%), Positives = 201/251 (80%), Gaps = 1/251 (0%)
Query: 2   SSIGAGYDLSASQFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYDP 61
           SSIG GYDLSAS FSPDGRVFQVEYA KAVENSSTAIG+R KDGVV  VEKLVLSKLY+ 
Sbjct: 1   SSIGTGYDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEE 60
Query: 62  GANKRIFHVDTHIGLG-SGLISAGRQLAETAKTEASEYRSKYGGNIPLHLLNERVSMYVH 120
           G+NKR+F+VD H+G+  +GL++  R LA+ A+ EAS +RS +G NIPL  L +RV+MYVH
Sbjct: 61  GSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVH 120
Query: 121 AYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEKLK 180
           AYTLYS VRPFG S +L S+   DG  LY++DPSGVS+GY+GCAIGKA+Q AKTEIEKL+
Sbjct: 121 AYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQ 180
Query: 181 LSTLSMEQLAKEAARIIYVVHDELKDKHFELELAWVGEKTNGKFEMVPQSFLEECENYAK 240
           +  ++   + KE A+IIY+VHDE+KDK FELEL+WVGE TNG+ E+VP+   EE E YAK
Sbjct: 181 MKEMTCRDIVKEVAKIIYIVHDEVKDKAFELELSWVGELTNGRHEIVPKDIREEAEKYAK 240
Query: 241 ASLQDSDSDND 251
            SL++ D  +D
Sbjct: 241 ESLKEEDESDD 251
>pdb|3UNB|F Chain F, Mouse Constitutive 20s Proteasome In Complex With Pr-957 Length = 255 Back     alignment and structure
>pdb|1Z7Q|G Chain G, Crystal Structure Of The 20s Proteasome From Yeast In Complex With The Proteasome Activator Pa26 From Trypanosome Brucei At 3.2 Angstroms Resolution Length = 288 Back     alignment and structure
>pdb|1G0U|F Chain F, A Gated Channel Into The Proteasome Core Particle Length = 248 Back     alignment and structure
>pdb|1FNT|G Chain G, Crystal Structure Of The 20s Proteasome From Yeast In Complex With The Proteasome Activator Pa26 From Trypanosome Brucei At 3.2 Angstroms Resolution Length = 287 Back     alignment and structure
>pdb|1RYP|G Chain G, Crystal Structure Of The 20s Proteasome From Yeast At 2.4 Angstroms Resolution Length = 244 Back     alignment and structure
>pdb|3OEU|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound 24 Length = 242 Back     alignment and structure
>pdb|3H4P|A Chain A, Proteasome 20s Core Particle From Methanocaldococcus Jannaschii Length = 264 Back     alignment and structure
>pdb|1J2P|A Chain A, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus Length = 246 Back     alignment and structure
>pdb|1J2Q|A Chain A, 20s Proteasome In Complex With Calpain-inhibitor I From Archaeoglobus Fulgidus Length = 237 Back     alignment and structure
>pdb|1G0U|D Chain D, A Gated Channel Into The Proteasome Core Particle Length = 241 Back     alignment and structure
>pdb|3UNB|D Chain D, Mouse Constitutive 20s Proteasome In Complex With Pr-957 Length = 241 Back     alignment and structure
>pdb|1IRU|E Chain E, Crystal Structure Of The Mammalian 20s Proteasome At 2.75 A Resolution Length = 241 Back     alignment and structure
>pdb|2Z5C|C Chain C, Crystal Structure Of A Novel Chaperone Complex For Yeast 20s Proteasome Assembly Length = 262 Back     alignment and structure
>pdb|1PMA|A Chain A, Proteasome From Thermoplasma Acidophilum Length = 233 Back     alignment and structure
>pdb|4G4S|E Chain E, Structure Of Proteasome-Pba1-Pba2 Complex Length = 261 Back     alignment and structure
>pdb|3JRM|A Chain A, Crystal Structure Of Archaeal 20s Proteasome In Complex With Mutated P26 Activator Length = 227 Back     alignment and structure
>pdb|1FNT|E Chain E, Crystal Structure Of The 20s Proteasome From Yeast In Complex With The Proteasome Activator Pa26 From Trypanosome Brucei At 3.2 Angstroms Resolution Length = 260 Back     alignment and structure
>pdb|1VSY|E Chain E, Proteasome Activator Complex Length = 250 Back     alignment and structure
>pdb|2KU1|A Chain A, Dynamic Regulation Of Archaeal Proteasome Gate Opening As Studied By Trosy-Nmr Length = 237 Back     alignment and structure
>pdb|1IRU|A Chain A, Crystal Structure Of The Mammalian 20s Proteasome At 2.75 A Resolution Length = 246 Back     alignment and structure
>pdb|3UNB|G Chain G, Mouse Constitutive 20s Proteasome In Complex With Pr-957 Length = 246 Back     alignment and structure
>pdb|3UNE|C Chain C, Mouse Constitutive 20s Proteasome Length = 248 Back     alignment and structure
>pdb|1RYP|A Chain A, Crystal Structure Of The 20s Proteasome From Yeast At 2.4 Angstroms Resolution Length = 243 Back     alignment and structure
>pdb|1RYP|E Chain E, Crystal Structure Of The 20s Proteasome From Yeast At 2.4 Angstroms Resolution Length = 242 Back     alignment and structure
>pdb|1YAR|A Chain A, Structure Of Archeabacterial 20s Proteasome Mutant D9s- Pa26 Complex Length = 233 Back     alignment and structure
>pdb|1IRU|D Chain D, Crystal Structure Of The Mammalian 20s Proteasome At 2.75 A Resolution Length = 248 Back     alignment and structure
>pdb|1YAU|A Chain A, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex Length = 233 Back     alignment and structure
>pdb|2KU2|A Chain A, Dynamic Regulation Of Archaeal Proteasome Gate Opening As Studied By Trosy-Nmr Length = 237 Back     alignment and structure
>pdb|3UNB|C Chain C, Mouse Constitutive 20s Proteasome In Complex With Pr-957 Length = 248 Back     alignment and structure
>pdb|1G0U|G Chain G, A Gated Channel Into The Proteasome Core Particle Length = 252 Back     alignment and structure
>pdb|1G0U|C Chain C, A Gated Channel Into The Proteasome Core Particle Length = 243 Back     alignment and structure
>pdb|1RYP|D Chain D, Crystal Structure Of The 20s Proteasome From Yeast At 2.4 Angstroms Resolution Length = 241 Back     alignment and structure
>pdb|1FNT|D Chain D, Crystal Structure Of The 20s Proteasome From Yeast In Complex With The Proteasome Activator Pa26 From Trypanosome Brucei At 3.2 Angstroms Resolution Length = 254 Back     alignment and structure
>pdb|1Z7Q|C Chain C, Crystal Structure Of The 20s Proteasome From Yeast In Complex With The Proteasome Activator Pa26 From Trypanosome Brucei At 3.2 Angstroms Resolution Length = 258 Back     alignment and structure
>pdb|1G0U|B Chain B, A Gated Channel Into The Proteasome Core Particle Length = 245 Back     alignment and structure
>pdb|1RYP|C Chain C, Crystal Structure Of The 20s Proteasome From Yeast At 2.4 Angstroms Resolution Length = 244 Back     alignment and structure
>pdb|1IRU|B Chain B, Crystal Structure Of The Mammalian 20s Proteasome At 2.75 A Resolution Length = 233 Back     alignment and structure
>pdb|3UNB|A Chain A, Mouse Constitutive 20s Proteasome In Complex With Pr-957 Length = 234 Back     alignment and structure
>pdb|3OEU|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound 24 Length = 235 Back     alignment and structure
>pdb|1RYP|B Chain B, Crystal Structure Of The 20s Proteasome From Yeast At 2.4 Angstroms Resolution Length = 250 Back     alignment and structure
>pdb|1VSY|C Chain C, Proteasome Activator Complex Length = 232 Back     alignment and structure
>pdb|1VSY|D Chain D, Proteasome Activator Complex Length = 227 Back     alignment and structure
>pdb|1IRU|C Chain C, Crystal Structure Of The Mammalian 20s Proteasome At 2.75 A Resolution Length = 261 Back     alignment and structure
>pdb|3UNB|B Chain B, Mouse Constitutive 20s Proteasome In Complex With Pr-957 Length = 261 Back     alignment and structure
>pdb|3UNB|E Chain E, Mouse Constitutive 20s Proteasome In Complex With Pr-957 Length = 263 Back     alignment and structure
>pdb|1IRU|F Chain F, Crystal Structure Of The Mammalian 20s Proteasome At 2.75 A Resolution Length = 263 Back     alignment and structure
>pdb|1VSY|B Chain B, Proteasome Activator Complex Length = 231 Back     alignment and structure
>pdb|1FNT|F Chain F, Crystal Structure Of The 20s Proteasome From Yeast In Complex With The Proteasome Activator Pa26 From Trypanosome Brucei At 3.2 Angstroms Resolution Length = 234 Back     alignment and structure
>pdb|4G4S|F Chain F, Structure Of Proteasome-Pba1-Pba2 Complex Length = 235 Back     alignment and structure
>pdb|1RYP|F Chain F, Crystal Structure Of The 20s Proteasome From Yeast At 2.4 Angstroms Resolution Length = 233 Back     alignment and structure
>pdb|1G0U|E Chain E, A Gated Channel Into The Proteasome Core Particle Length = 234 Back     alignment and structure
>pdb|3SDI|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With Compound 20 Length = 233 Back     alignment and structure
>pdb|1YA7|H Chain H, Implications For Interactions Of Proteasome With Pan And Pa700 From The 1.9 A Structure Of A Proteasome-11s Activator Complex Length = 217 Back     alignment and structure
>pdb|1PMA|B Chain B, Proteasome From Thermoplasma Acidophilum Length = 211 Back     alignment and structure
>pdb|1J2Q|H Chain H, 20s Proteasome In Complex With Calpain-inhibitor I From Archaeoglobus Fulgidus Length = 202 Back     alignment and structure
>pdb|3C91|H Chain H, Thermoplasma Acidophilum 20s Proteasome With An Open Gate Length = 203 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query252
1iru_G254 20S proteasome; cell cycle, immune response, prote 1e-119
3nzj_F288 Proteasome component C1; ubiquitin, protein degrad 1e-116
1ryp_G244 20S proteasome; multicatalytic proteinase, protein 1e-112
1iru_E241 20S proteasome; cell cycle, immune response, prote 1e-108
1ryp_B250 20S proteasome; multicatalytic proteinase, protein 1e-107
1iru_B233 20S proteasome; cell cycle, immune response, prote 1e-106
1iru_A246 20S proteasome; cell cycle, immune response, prote 1e-106
3h4p_A264 Proteasome subunit alpha; core particle, cytoplasm 1e-104
1j2p_A246 Alpha-ring, proteasome alpha subunit; hydrolase; 2 1e-103
1yar_A233 Proteasome alpha subunit; proteasome 20S, PA26 pro 1e-102
1iru_C261 20S proteasome; cell cycle, immune response, prote 1e-101
1ryp_C244 20S proteasome; multicatalytic proteinase, protein 1e-101
1iru_D248 20S proteasome; cell cycle, immune response, prote 1e-100
1ryp_A243 20S proteasome; multicatalytic proteinase, protein 1e-98
1iru_F263 20S proteasome; cell cycle, immune response, prote 7e-98
1ryp_E242 20S proteasome; multicatalytic proteinase, protein 3e-97
1ryp_F233 20S proteasome; multicatalytic proteinase, protein 6e-97
1ryp_D241 20S proteasome; multicatalytic proteinase, protein 1e-92
1q5q_A259 Proteasome alpha-type subunit 1; proteasome assemb 5e-27
3mi0_A248 Proteasome subunit alpha; enzyme inhibitors, lacto 1e-25
3unf_H234 Proteasome subunit beta type-10; antigen presentat 1e-18
3nzj_H261 Proteasome component PUP1; ubiquitin, protein degr 1e-17
1yar_H217 Proteasome beta subunit; proteasome 20S, PA26 prot 6e-16
1iru_I234 20S proteasome; cell cycle, immune response, prote 1e-15
1ryp_I222 20S proteasome; multicatalytic proteinase, protein 2e-15
3nzj_K287 Proteasome component PRE2; ubiquitin, protein degr 6e-14
1ryp_L212 20S proteasome; multicatalytic proteinase, protein 9e-13
1ryp_K198 20S proteasome; multicatalytic proteinase, protein 9e-13
1ryp_K198 20S proteasome; multicatalytic proteinase, protein 2e-12
1q5r_H294 Proteasome beta-type subunit 1; proteasome assembl 3e-12
1iru_K201 20S proteasome; cell cycle, immune response, prote 5e-12
1j2q_H202 Proteasome beta subunit; ubiquitin, CP, hydrolase; 1e-11
1iru_M213 20S proteasome; cell cycle, immune response, prote 2e-11
1q5q_H235 Proteasome beta-type subunit 1; proteasome assembl 2e-11
1g0u_M266 Proteasome component PRE4; ubiquitin, degradation, 2e-11
1ryp_N233 20S proteasome; multicatalytic proteinase, protein 3e-11
1ryp_M222 20S proteasome; multicatalytic proteinase, protein 4e-11
1iru_L204 20S proteasome; cell cycle, immune response, prote 1e-10
1iru_H205 20S proteasome; cell cycle, immune response, prote 4e-10
1ryp_J204 20S proteasome; multicatalytic proteinase, protein 1e-09
1ryp_H205 20S proteasome; multicatalytic proteinase, protein 3e-09
2jay_A291 Proteasome; hydrolase; 1.99A {Mycobacterium tuberc 8e-09
1iru_N219 20S proteasome; cell cycle, immune response, prote 1e-08
1iru_J205 20S proteasome; cell cycle, immune response, prote 1e-08
3unf_N199 Proteasome subunit beta type-9; antigen presentati 4e-08
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F Length = 254 Back     alignment and structure
 Score =  340 bits (873), Expect = e-119
 Identities = 163/251 (64%), Positives = 201/251 (80%), Gaps = 1/251 (0%)

Query: 2   SSIGAGYDLSASQFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYDP 61
           SSIG GYDLSAS FSPDGRVFQVEYA KAVENSSTAIG+R KDGVV  VEKLVLSKLY+ 
Sbjct: 1   SSIGTGYDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEE 60

Query: 62  GANKRIFHVDTHIGLG-SGLISAGRQLAETAKTEASEYRSKYGGNIPLHLLNERVSMYVH 120
           G+NKR+F+VD H+G+  +GL++  R LA+ A+ EAS +RS +G NIPL  L +RV+MYVH
Sbjct: 61  GSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVH 120

Query: 121 AYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEKLK 180
           AYTLYS VRPFG S +L S+   DG  LY++DPSGVS+GY+GCAIGKA+Q AKTEIEKL+
Sbjct: 121 AYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQ 180

Query: 181 LSTLSMEQLAKEAARIIYVVHDELKDKHFELELAWVGEKTNGKFEMVPQSFLEECENYAK 240
           +  ++   + KE A+IIY+VHDE+KDK FELEL+WVGE TNG+ E+VP+   EE E YAK
Sbjct: 181 MKEMTCRDIVKEVAKIIYIVHDEVKDKAFELELSWVGELTNGRHEIVPKDIREEAEKYAK 240

Query: 241 ASLQDSDSDND 251
            SL++ D  +D
Sbjct: 241 ESLKEEDESDD 251
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 3bdm_F* 1fnt_G* 2zcy_F* Length = 288 Back     alignment and structure
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ... Length = 244 Back     alignment and structure
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D Length = 241 Back     alignment and structure
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ... Length = 250 Back     alignment and structure
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A Length = 233 Back     alignment and structure
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G Length = 246 Back     alignment and structure
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii} Length = 264 Back     alignment and structure
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A* Length = 246 Back     alignment and structure
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A Length = 233 Back     alignment and structure
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B Length = 261 Back     alignment and structure
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ... Length = 244 Back     alignment and structure
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C* Length = 248 Back     alignment and structure
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ... Length = 243 Back     alignment and structure
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E Length = 263 Back     alignment and structure
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ... Length = 242 Back     alignment and structure
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ... Length = 233 Back     alignment and structure
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ... Length = 241 Back     alignment and structure
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A Length = 259 Back     alignment and structure
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D Length = 248 Back     alignment and structure
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H Length = 234 Back     alignment and structure
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* Length = 261 Back     alignment and structure
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H Length = 217 Back     alignment and structure
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H Length = 234 Back     alignment and structure
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ... Length = 222 Back     alignment and structure
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* Length = 287 Back     alignment and structure
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ... Length = 212 Back     alignment and structure
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ... Length = 198 Back     alignment and structure
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H Length = 294 Back     alignment and structure
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J Length = 201 Back     alignment and structure
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4 Length = 202 Back     alignment and structure
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L Length = 213 Back     alignment and structure
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 Length = 235 Back     alignment and structure
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M* Length = 266 Back     alignment and structure
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ... Length = 233 Back     alignment and structure
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ... Length = 222 Back     alignment and structure
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K Length = 204 Back     alignment and structure
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N Length = 205 Back     alignment and structure
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ... Length = 204 Back     alignment and structure
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ... Length = 205 Back     alignment and structure
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H Length = 291 Back     alignment and structure
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M Length = 219 Back     alignment and structure
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I Length = 205 Back     alignment and structure
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N Length = 199 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query252
3nzj_F288 Proteasome component C1; ubiquitin, protein degrad 100.0
1iru_G254 20S proteasome; cell cycle, immune response, prote 100.0
3h4p_A264 Proteasome subunit alpha; core particle, cytoplasm 100.0
1ryp_G244 20S proteasome; multicatalytic proteinase, protein 100.0
1ryp_A243 20S proteasome; multicatalytic proteinase, protein 100.0
1iru_A246 20S proteasome; cell cycle, immune response, prote 100.0
1iru_C261 20S proteasome; cell cycle, immune response, prote 100.0
1ryp_C244 20S proteasome; multicatalytic proteinase, protein 100.0
1yar_A233 Proteasome alpha subunit; proteasome 20S, PA26 pro 100.0
1iru_E241 20S proteasome; cell cycle, immune response, prote 100.0
1iru_B233 20S proteasome; cell cycle, immune response, prote 100.0
1j2p_A246 Alpha-ring, proteasome alpha subunit; hydrolase; 2 100.0
1ryp_D241 20S proteasome; multicatalytic proteinase, protein 100.0
1iru_D248 20S proteasome; cell cycle, immune response, prote 100.0
1ryp_E242 20S proteasome; multicatalytic proteinase, protein 100.0
1ryp_B250 20S proteasome; multicatalytic proteinase, protein 100.0
1ryp_F233 20S proteasome; multicatalytic proteinase, protein 100.0
1iru_F263 20S proteasome; cell cycle, immune response, prote 100.0
1q5q_A259 Proteasome alpha-type subunit 1; proteasome assemb 100.0
3mi0_A248 Proteasome subunit alpha; enzyme inhibitors, lacto 100.0
3h4p_a219 Proteasome subunit beta; core particle, cytoplasm, 100.0
1yar_H217 Proteasome beta subunit; proteasome 20S, PA26 prot 100.0
1j2q_H202 Proteasome beta subunit; ubiquitin, CP, hydrolase; 100.0
3nzj_K287 Proteasome component PRE2; ubiquitin, protein degr 100.0
1iru_H205 20S proteasome; cell cycle, immune response, prote 100.0
1ryp_L212 20S proteasome; multicatalytic proteinase, protein 100.0
1q5r_H294 Proteasome beta-type subunit 1; proteasome assembl 100.0
2jay_A291 Proteasome; hydrolase; 1.99A {Mycobacterium tuberc 100.0
1iru_N219 20S proteasome; cell cycle, immune response, prote 100.0
1iru_L204 20S proteasome; cell cycle, immune response, prote 100.0
1iru_M213 20S proteasome; cell cycle, immune response, prote 100.0
1ryp_H205 20S proteasome; multicatalytic proteinase, protein 100.0
1ryp_N233 20S proteasome; multicatalytic proteinase, protein 100.0
3nzj_H261 Proteasome component PUP1; ubiquitin, protein degr 100.0
1q5q_H235 Proteasome beta-type subunit 1; proteasome assembl 100.0
1ryp_K198 20S proteasome; multicatalytic proteinase, protein 100.0
1iru_J205 20S proteasome; cell cycle, immune response, prote 100.0
1ryp_J204 20S proteasome; multicatalytic proteinase, protein 100.0
1g0u_M266 Proteasome component PRE4; ubiquitin, degradation, 100.0
1ryp_M222 20S proteasome; multicatalytic proteinase, protein 100.0
3unf_H234 Proteasome subunit beta type-10; antigen presentat 100.0
3unf_N199 Proteasome subunit beta type-9; antigen presentati 100.0
1iru_K201 20S proteasome; cell cycle, immune response, prote 100.0
1ryp_I222 20S proteasome; multicatalytic proteinase, protein 100.0
1iru_I234 20S proteasome; cell cycle, immune response, prote 100.0
2z3b_A180 ATP-dependent protease HSLV; N-terminal nucleophIl 100.0
1m4y_A171 ATP-dependent protease HSLV; N-terminal catalytic 100.0
1g3k_A174 ATP-dependent protease HSLV; hydrolase; 1.90A {Hae 100.0
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F* Back     alignment and structure
Probab=100.00  E-value=8.4e-69  Score=471.85  Aligned_cols=249  Identities=48%  Similarity=0.795  Sum_probs=232.5

Q ss_pred             CCCCCCCCCCCccccCCCCccchhhhHHHHHhcCCcEEEEEeCCEEEEEEeccccCCcccCCCceeEEEecCeeEEe-ec
Q psy14445          1 MSSIGAGYDLSASQFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYDPGANKRIFHVDTHIGLG-SG   79 (252)
Q Consensus         1 ms~~~~~yd~~~t~fspeGrl~Qveya~~av~~G~t~vgi~~~dgVvlaad~~~~~~~~~~~~~~Ki~~i~~~i~~~-sG   79 (252)
                      |||+.++||+++|+|||+|||||||||+||+++|+|+|||+++||||||+|+|.++++++.++.+|||+|++||+|+ +|
T Consensus         1 m~~~~~~yd~~~t~fSP~Grl~QvEYA~kAv~~GtT~Vgik~kdGVVlAaD~r~t~gl~~~~~~~KI~~I~d~i~~~~aG   80 (288)
T 3nzj_F            1 MTSIGTGYDLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQVVDRHIGCVYSG   80 (288)
T ss_dssp             ----CCCTTSSTTCCCTTSCCHHHHHHHHHHHTSCCEEEEEETTEEEEEEEEEECCTTBCTTCSCCCEEETTTEEEEEEE
T ss_pred             CCCCcCCccCCcccCCCCCchHHHHHHHHHHhcCCcEEEEEECCEEEEEEcCCcccCCccccccceEEEEcCCEEEEecC
Confidence            99999999999999999999999999999999999999999999999999999999999877889999999999999 99


Q ss_pred             chhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCccCceeeEEEEEEeCCCCceEEEECCCCceec
Q psy14445         80 LISAGRQLAETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHG  159 (252)
Q Consensus        80 ~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~  159 (252)
                      ..+|++.+++++|.+++.|++++++++|++.+|++|++++|.||++++.|||+|++||||||+ +||+||++||+|++.+
T Consensus        81 ~~aD~~~l~~~lr~e~~~y~~~~~~~i~v~~lA~~l~~~l~~yt~~~~~rP~gv~~lvaG~D~-~Gp~Ly~iDp~G~~~~  159 (288)
T 3nzj_F           81 LIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDK-NGAHLYMLEPSGSYWG  159 (288)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEET-TEEEEEEECTTSCEEE
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEEEEeC-CCCEEEEECCCCCEEE
Confidence            999999999999999999999999999999999999999999999999999999999999999 8899999999999999


Q ss_pred             ccEEEecCChhhhhHHHHHh---cCCCCCHHHHHHHHHHHHHHHhhccCCCcceEEEEEEEe-cCCCeEEecChhHHHHH
Q psy14445        160 YFGCAIGKAKQNAKTEIEKL---KLSTLSMEQLAKEAARIIYVVHDELKDKHFELELAWVGE-KTNGKFEMVPQSFLEEC  235 (252)
Q Consensus       160 ~~~~a~G~g~~~~~~~Le~~---~~~~~s~~eai~la~~al~~~~~~~~~~~~~iev~~i~~-~~~~~~~~~~~~~~~~~  235 (252)
                      ++++|+|+|+++++++||+.   |+++||++||++++++||..++++...+++.+||+||++ +++++|+++|+++++++
T Consensus       160 ~~~~aiGsgs~~a~~~Lek~~~~~~~~ms~eEAv~la~~al~~a~~~~~~~~~~iev~vIt~~~~~~~~~~vp~~~~~~~  239 (288)
T 3nzj_F          160 YKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFVKGDLLQEA  239 (288)
T ss_dssp             BSEEEESTTHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHGGGGTTSEEEEEEEEEETTTSTTCCEECCHHHHHHH
T ss_pred             cCEEEEcCcHHHHHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEEecCCCceEEECCHHHHHHH
Confidence            99999999999999999999   999999999999999999999988666778899999999 78999999999999999


Q ss_pred             HHHHHhcccCCCCCC
Q psy14445        236 ENYAKASLQDSDSDN  250 (252)
Q Consensus       236 ~~~~~~~~~~~~~~~  250 (252)
                      .+.|+..++++|+++
T Consensus       240 ~~~~~~~~~~~~~~~  254 (288)
T 3nzj_F          240 IDFAQKEINGDDDED  254 (288)
T ss_dssp             HHHHHHHTC------
T ss_pred             HHHHHHHhhcccccc
Confidence            999999888777653
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F Back     alignment and structure
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii} Back     alignment and structure
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ... Back     alignment and structure
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ... Back     alignment and structure
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G Back     alignment and structure
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B Back     alignment and structure
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ... Back     alignment and structure
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A Back     alignment and structure
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D Back     alignment and structure
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A Back     alignment and structure
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A* Back     alignment and structure
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ... Back     alignment and structure
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C* Back     alignment and structure
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ... Back     alignment and structure
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ... Back     alignment and structure
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ... Back     alignment and structure
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E Back     alignment and structure
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A Back     alignment and structure
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D Back     alignment and structure
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii} Back     alignment and structure
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H Back     alignment and structure
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4 Back     alignment and structure
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5 Back     alignment and structure
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N Back     alignment and structure
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ... Back     alignment and structure
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H Back     alignment and structure
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H Back     alignment and structure
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M Back     alignment and structure
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K Back     alignment and structure
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L Back     alignment and structure
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ... Back     alignment and structure
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ... Back     alignment and structure
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2 Back     alignment and structure
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 Back     alignment and structure
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ... Back     alignment and structure
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I Back     alignment and structure
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ... Back     alignment and structure
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M* Back     alignment and structure
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ... Back     alignment and structure
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H Back     alignment and structure
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N Back     alignment and structure
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J Back     alignment and structure
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ... Back     alignment and structure
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H Back     alignment and structure
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A Back     alignment and structure
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4 Back     alignment and structure
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 252
d1irug_245 d.153.1.4 (G:) Proteasome alpha subunit (non-catal 3e-87
d1rypg_244 d.153.1.4 (G:) Proteasome alpha subunit (non-catal 3e-72
d1irue_234 d.153.1.4 (E:) Proteasome alpha subunit (non-catal 1e-61
d1j2pa_243 d.153.1.4 (A:) Proteasome alpha subunit (non-catal 4e-60
d1irua_244 d.153.1.4 (A:) Proteasome alpha subunit (non-catal 9e-60
d1rypb_250 d.153.1.4 (B:) Proteasome alpha subunit (non-catal 3e-58
d1iruf_238 d.153.1.4 (F:) Proteasome alpha subunit (non-catal 4e-58
d1rypc_244 d.153.1.4 (C:) Proteasome alpha subunit (non-catal 1e-57
d1iruc_250 d.153.1.4 (C:) Proteasome alpha subunit (non-catal 1e-57
d1irud_243 d.153.1.4 (D:) Proteasome alpha subunit (non-catal 2e-56
d1rypa_243 d.153.1.4 (A:) Proteasome alpha subunit (non-catal 1e-55
d1rypf_233 d.153.1.4 (F:) Proteasome alpha subunit (non-catal 2e-55
d1rype_242 d.153.1.4 (E:) Proteasome alpha subunit (non-catal 2e-55
d1rypd_241 d.153.1.4 (D:) Proteasome alpha subunit (non-catal 2e-54
d1irub_233 d.153.1.4 (B:) Proteasome alpha subunit (non-catal 2e-54
d1yara1221 d.153.1.4 (A:13-233) Proteasome alpha subunit (non 6e-53
d1q5qa_227 d.153.1.4 (A:) Proteasome alpha subunit (non-catal 2e-31
d1ryp2_233 d.153.1.4 (2:) Proteasome beta subunit (catalytic) 2e-24
d1iruh_202 d.153.1.4 (H:) Proteasome beta subunit (catalytic) 6e-24
d1yarh1203 d.153.1.4 (H:1-203) Proteasome beta subunit (catal 2e-23
d1ryp1_222 d.153.1.4 (1:) Proteasome beta subunit (catalytic) 2e-23
d1rypi_222 d.153.1.4 (I:) Proteasome beta subunit (catalytic) 7e-23
d1irul_201 d.153.1.4 (L:) Proteasome beta subunit (catalytic) 2e-22
d1irui_220 d.153.1.4 (I:) Proteasome beta subunit (catalytic) 2e-22
d1j2qh_202 d.153.1.4 (H:) Proteasome beta subunit (catalytic) 6e-22
d1rypl_212 d.153.1.4 (L:) Proteasome beta subunit (catalytic) 3e-21
d1q5qh_224 d.153.1.4 (H:) Proteasome beta subunit (catalytic) 1e-20
d1iru2_217 d.153.1.4 (2:) Proteasome beta subunit (catalytic) 3e-20
d1rypj_204 d.153.1.4 (J:) Proteasome beta subunit (catalytic) 6e-20
d1rypk_198 d.153.1.4 (K:) Proteasome beta subunit (catalytic) 1e-19
d1ryph_205 d.153.1.4 (H:) Proteasome beta subunit (catalytic) 2e-19
d1iruj_204 d.153.1.4 (J:) Proteasome beta subunit (catalytic) 3e-16
d1iruk_199 d.153.1.4 (K:) Proteasome beta subunit (catalytic) 3e-16
d1iru1_213 d.153.1.4 (1:) Proteasome beta subunit (catalytic) 5e-12
d1m4ya_171 d.153.1.4 (A:) HslV (ClpQ) protease {Thermotoga ma 5e-06
d1g3ka_173 d.153.1.4 (A:) HslV (ClpQ) protease {Haemophilus i 1e-05
d2z3ba1180 d.153.1.4 (A:1-180) HslV (ClpQ) protease {Bacillus 2e-04
>d1irug_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 245 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  257 bits (657), Expect = 3e-87
 Identities = 161/245 (65%), Positives = 198/245 (80%), Gaps = 1/245 (0%)

Query: 2   SSIGAGYDLSASQFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYDP 61
           SSIG GYDLSAS FSPDGRVFQVEYA KAVENSSTAIG+R KDGVV  VEKLVLSKLY+ 
Sbjct: 1   SSIGTGYDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEE 60

Query: 62  GANKRIFHVDTHIGLG-SGLISAGRQLAETAKTEASEYRSKYGGNIPLHLLNERVSMYVH 120
           G+NKR+F+VD H+G+  +GL++  R LA+ A+ EAS +RS +G NIPL  L +RV+MYVH
Sbjct: 61  GSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVH 120

Query: 121 AYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEKLK 180
           AYTLYS VRPFG S +L S+   DG  LY++DPSGVS+GY+GCAIGKA+Q AKTEIEKL+
Sbjct: 121 AYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQ 180

Query: 181 LSTLSMEQLAKEAARIIYVVHDELKDKHFELELAWVGEKTNGKFEMVPQSFLEECENYAK 240
           +  ++   + KE A+IIY+VHDE+KDK FELEL+WVGE TNG+ E+VP+   EE E YAK
Sbjct: 181 MKEMTCRDIVKEVAKIIYIVHDEVKDKAFELELSWVGELTNGRHEIVPKDIREEAEKYAK 240

Query: 241 ASLQD 245
            SL++
Sbjct: 241 ESLKE 245
>d1rypg_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 244 Back     information, alignment and structure
>d1irue_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 234 Back     information, alignment and structure
>d1j2pa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 243 Back     information, alignment and structure
>d1irua_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 244 Back     information, alignment and structure
>d1rypb_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 250 Back     information, alignment and structure
>d1iruf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 238 Back     information, alignment and structure
>d1rypc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 244 Back     information, alignment and structure
>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 250 Back     information, alignment and structure
>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 243 Back     information, alignment and structure
>d1rypa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 243 Back     information, alignment and structure
>d1rypf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233 Back     information, alignment and structure
>d1rype_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 242 Back     information, alignment and structure
>d1rypd_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 241 Back     information, alignment and structure
>d1irub_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 233 Back     information, alignment and structure
>d1yara1 d.153.1.4 (A:13-233) Proteasome alpha subunit (non-catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 221 Back     information, alignment and structure
>d1q5qa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Rhodococcus erythropolis [TaxId: 1833]} Length = 227 Back     information, alignment and structure
>d1ryp2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233 Back     information, alignment and structure
>d1iruh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 202 Back     information, alignment and structure
>d1yarh1 d.153.1.4 (H:1-203) Proteasome beta subunit (catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 203 Back     information, alignment and structure
>d1ryp1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 222 Back     information, alignment and structure
>d1rypi_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 222 Back     information, alignment and structure
>d1irul_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 201 Back     information, alignment and structure
>d1irui_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 220 Back     information, alignment and structure
>d1j2qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 202 Back     information, alignment and structure
>d1rypl_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 212 Back     information, alignment and structure
>d1q5qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Rhodococcus erythropolis [TaxId: 1833]} Length = 224 Back     information, alignment and structure
>d1iru2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 217 Back     information, alignment and structure
>d1rypj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 204 Back     information, alignment and structure
>d1rypk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 198 Back     information, alignment and structure
>d1ryph_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 205 Back     information, alignment and structure
>d1iruj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 204 Back     information, alignment and structure
>d1iruk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 199 Back     information, alignment and structure
>d1iru1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 213 Back     information, alignment and structure
>d1m4ya_ d.153.1.4 (A:) HslV (ClpQ) protease {Thermotoga maritima [TaxId: 2336]} Length = 171 Back     information, alignment and structure
>d1g3ka_ d.153.1.4 (A:) HslV (ClpQ) protease {Haemophilus influenzae [TaxId: 727]} Length = 173 Back     information, alignment and structure
>d2z3ba1 d.153.1.4 (A:1-180) HslV (ClpQ) protease {Bacillus subtilis [TaxId: 1423]} Length = 180 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query252
d1irug_245 Proteasome alpha subunit (non-catalytic) {Cow (Bos 100.0
d1rypg_244 Proteasome alpha subunit (non-catalytic) {Baker's 100.0
d1iruc_250 Proteasome alpha subunit (non-catalytic) {Cow (Bos 100.0
d1irua_244 Proteasome alpha subunit (non-catalytic) {Cow (Bos 100.0
d1j2pa_243 Proteasome alpha subunit (non-catalytic) {Archaeon 100.0
d1rypc_244 Proteasome alpha subunit (non-catalytic) {Baker's 100.0
d1rypb_250 Proteasome alpha subunit (non-catalytic) {Baker's 100.0
d1irue_234 Proteasome alpha subunit (non-catalytic) {Cow (Bos 100.0
d1rypf_233 Proteasome alpha subunit (non-catalytic) {Baker's 100.0
d1irud_243 Proteasome alpha subunit (non-catalytic) {Cow (Bos 100.0
d1iruf_238 Proteasome alpha subunit (non-catalytic) {Cow (Bos 100.0
d1rypd_241 Proteasome alpha subunit (non-catalytic) {Baker's 100.0
d1rypa_243 Proteasome alpha subunit (non-catalytic) {Baker's 100.0
d1yara1221 Proteasome alpha subunit (non-catalytic) {Archaeon 100.0
d1rype_242 Proteasome alpha subunit (non-catalytic) {Baker's 100.0
d1irub_233 Proteasome alpha subunit (non-catalytic) {Cow (Bos 100.0
d1q5qa_227 Proteasome alpha subunit (non-catalytic) {Rhodococ 100.0
d1yarh1203 Proteasome beta subunit (catalytic) {Archaeon Ther 100.0
d1ryph_205 Proteasome beta subunit (catalytic) {Baker's yeast 100.0
d1irul_201 Proteasome beta subunit (catalytic) {Cow (Bos taur 100.0
d1rypl_212 Proteasome beta subunit (catalytic) {Baker's yeast 100.0
d1rypk_198 Proteasome beta subunit (catalytic) {Baker's yeast 100.0
d1iruh_202 Proteasome beta subunit (catalytic) {Cow (Bos taur 100.0
d1j2qh_202 Proteasome beta subunit (catalytic) {Archaeon Arch 100.0
d1ryp2_233 Proteasome beta subunit (catalytic) {Baker's yeast 100.0
d1irui_220 Proteasome beta subunit (catalytic) {Cow (Bos taur 100.0
d1rypi_222 Proteasome beta subunit (catalytic) {Baker's yeast 100.0
d1iruj_204 Proteasome beta subunit (catalytic) {Cow (Bos taur 100.0
d1rypj_204 Proteasome beta subunit (catalytic) {Baker's yeast 100.0
d1iru2_217 Proteasome beta subunit (catalytic) {Cow (Bos taur 100.0
d1ryp1_222 Proteasome beta subunit (catalytic) {Baker's yeast 100.0
d1q5qh_224 Proteasome beta subunit (catalytic) {Rhodococcus e 100.0
d1iru1_213 Proteasome beta subunit (catalytic) {Cow (Bos taur 100.0
d1iruk_199 Proteasome beta subunit (catalytic) {Cow (Bos taur 100.0
d2z3ba1180 HslV (ClpQ) protease {Bacillus subtilis [TaxId: 14 99.91
d1m4ya_171 HslV (ClpQ) protease {Thermotoga maritima [TaxId: 99.89
d1g3ka_173 HslV (ClpQ) protease {Haemophilus influenzae [TaxI 99.87
>d1irug_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.7e-68  Score=456.81  Aligned_cols=243  Identities=66%  Similarity=1.073  Sum_probs=234.0

Q ss_pred             CCCCCCCCCCccccCCCCccchhhhHHHHHhcCCcEEEEEeCCEEEEEEeccccCCcccCCCceeEEEecCeeEEe-ecc
Q psy14445          2 SSIGAGYDLSASQFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYDPGANKRIFHVDTHIGLG-SGL   80 (252)
Q Consensus         2 s~~~~~yd~~~t~fspeGrl~Qveya~~av~~G~t~vgi~~~dgVvlaad~~~~~~~~~~~~~~Ki~~i~~~i~~~-sG~   80 (252)
                      ||+++|||+++|+|||||||+|||||+||+++|+|+|||+++||||||+|++.+.+++..++.+|||+|++|++|+ ||.
T Consensus         1 ~~~~~~yd~~~t~Fsp~Grl~QvEYa~~av~~G~t~VGik~~dgVvlaad~~~~~~~~~~~~~~Ki~~I~~~i~~~~sG~   80 (245)
T d1irug_           1 SSIGTGYDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGL   80 (245)
T ss_dssp             CCCCSSTTSCTTCCCTTSCCHHHHHHHHHHHTSCCEEEEECSSBEEEEEEEECSCTTBCTTTTCCEEEEETTEEEEEEEC
T ss_pred             CCCccccCCCCceECCCCeehHHHHHHHHHHcCCcEEEEEeCCEEEEEEeccccccccccCccceEEEcCCCEEEEeccC
Confidence            7899999999999999999999999999999999999999999999999999998888888889999999999999 999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCccCceeeEEEEEEeCCCCceEEEECCCCceecc
Q psy14445         81 ISAGRQLAETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGY  160 (252)
Q Consensus        81 ~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~~  160 (252)
                      .+|++.++++++.++..|++++++++|++.+++++++++|.|+|+++.|||++++||+|||+++||+||.+||+|++.++
T Consensus        81 ~~D~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~la~~~~~~t~~~~~rP~~vs~li~G~D~~~gp~Ly~iDp~G~~~~~  160 (245)
T d1irug_          81 LADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGY  160 (245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSBSSBCCCSEEEEEEEEETTTEEEEEEECTTCCEEEB
T ss_pred             chhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhccccccccceEEEEEEEcCCCCceEEEEcCCceEEee
Confidence            99999999999999999999999999999999999999999999999999999999999997689999999999999999


Q ss_pred             cEEEecCChhhhhHHHHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCcceEEEEEEEecCCCeEEecChhHHHHHHHHHH
Q psy14445        161 FGCAIGKAKQNAKTEIEKLKLSTLSMEQLAKEAARIIYVVHDELKDKHFELELAWVGEKTNGKFEMVPQSFLEECENYAK  240 (252)
Q Consensus       161 ~~~a~G~g~~~~~~~Le~~~~~~~s~~eai~la~~al~~~~~~~~~~~~~iev~~i~~~~~~~~~~~~~~~~~~~~~~~~  240 (252)
                      +++|+|+|++.++++||+.|+++||++||++++++||+.++++...+.++|||++|++++++.++++|+++.+++.+++.
T Consensus       161 ~~~a~G~gs~~a~~~Le~~~~~dmt~eea~~l~~~~l~~~~~~~~~~~~~iei~~v~~~~~~~~~~~~~e~~~~~~~~~~  240 (245)
T d1irug_         161 WGCAIGKARQAAKTEIEKLQMKEMTCRDIVKEVAKIIYIVHDEVKDKAFELELSWVGELTNGRHEIVPKDIREEAEKYAK  240 (245)
T ss_dssp             SEEEESTTHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHSCSSSSCCEEEEEEECBTTTTTCCEECCHHHHHHHHHHHH
T ss_pred             eEEEECCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEEEEecCCCeEEEChHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999876677788999999998889999999999999999988


Q ss_pred             hccc
Q psy14445        241 ASLQ  244 (252)
Q Consensus       241 ~~~~  244 (252)
                      .+++
T Consensus       241 ~~~~  244 (245)
T d1irug_         241 ESLK  244 (245)
T ss_dssp             HHHC
T ss_pred             Hhhc
Confidence            8765
>d1rypg_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1irua_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1j2pa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1rypc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1rypb_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1irue_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1rypf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1iruf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1rypd_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1rypa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1yara1 d.153.1.4 (A:13-233) Proteasome alpha subunit (non-catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1rype_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1irub_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1q5qa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Rhodococcus erythropolis [TaxId: 1833]} Back     information, alignment and structure
>d1yarh1 d.153.1.4 (H:1-203) Proteasome beta subunit (catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1ryph_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1irul_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1rypl_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1rypk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1iruh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1j2qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1ryp2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1irui_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1rypi_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1iruj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1rypj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1iru2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1ryp1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q5qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Rhodococcus erythropolis [TaxId: 1833]} Back     information, alignment and structure
>d1iru1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1iruk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2z3ba1 d.153.1.4 (A:1-180) HslV (ClpQ) protease {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1m4ya_ d.153.1.4 (A:) HslV (ClpQ) protease {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1g3ka_ d.153.1.4 (A:) HslV (ClpQ) protease {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure