Psyllid ID: psy14456

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90---
Protein Sequence
MHDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWGGATVLSGSHDRTVRFWDLRTRGCTNVLTPITVP
Secondary Structure (PSIPRED)
cccccEEEEEEccccccccccEEEEccccccEEEEEcccccEEEccccccccEEEEEcccccEEEEccccccEEEEEcccccEEEEccccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEEEEcccccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEcccccEEEEcccccEEEEEEcccccEEEEEcccccc
Coil and Loop (DISEMBL)
mhdgtvrdvcfiedtsnkssllisggagdckiyVTDCATGQafqalsghsghvlslynwggatvlsgshdrtvrfwdlrtrgctnvltpitvp
Flexible Loop (DISEMBL)
MHDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWGGATVLSGSHDRTVRfwdlrtrgctnvltpitvp
Low Complexity Region (SEG)
MHDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWGGATVLSGSHDRTVRFWDLRTRGCTNVLTPITVP
Disordered region (IsUnstruct)
******RDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWGGATVLSGSHDRTVRFWDLRTRGCTNVLTPI***
Disordered Region (DISOPRED)
MHDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWGGATVLSGSHDRTVRFWDLRTRGCTNVLTP****
Disordered Region (DISEMBL)
MHDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWGGATVLSGSHDRTVRFWDLRTRGCTNVLTPITVP
Disordered Region (DISPRO)
****TVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWGGATVLSGSHDRTVRFWDLRTRGCTNVLTP****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWGGATVLSGSHDRTVRFWDLRTRGCTNVLTPITVP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	93	2.2.26 [Sep-21-2011]
Q8CGF6	920	WD repeat-containing prot	yes	N/A	0.935	0.094	0.574	7e-28
O94967	919	WD repeat-containing prot	yes	N/A	0.935	0.094	0.574	9e-28
Q8MY12	780	Myosin heavy chain kinase	yes	N/A	0.838	0.1	0.360	2e-08
C4YFX2	511	Transcriptional repressor	N/A	N/A	0.870	0.158	0.379	5e-07
P0CY34	512	Transcriptional repressor	N/A	N/A	0.870	0.158	0.379	5e-07
Q3Y8L7	446	Outer row dynein assembly	N/A	N/A	0.774	0.161	0.383	6e-07
P16649	713	General transcriptional c	yes	N/A	0.870	0.113	0.379	2e-06
P56094	682	General transcriptional c	yes	N/A	0.870	0.118	0.379	2e-06
Q9V3J8	361	Protein will die slowly O	no	N/A	0.870	0.224	0.356	7e-06
Q00808	1356	Vegetative incompatibilit	no	N/A	0.870	0.059	0.356	7e-06

>sp|Q8CGF6|WDR47_MOUSE WD repeat-containing protein 47 OS=Mus musculus GN=Wdr47 PE=1 SV=2

 Score =  122 bits (306), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 50/87 (57%), Positives = 62/87 (71%)

Query: 1   MHDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWG 60
           MHDGT+RD+ F+E   +  ++LIS GAGDC IY TDC  GQ   ALSGH+GH+L+LY W 
Sbjct: 707 MHDGTIRDLAFMEGPESGGAILISAGAGDCNIYTTDCQRGQGLHALSGHTGHILALYTWS 766

Query: 61  GATVLSGSHDRTVRFWDLRTRGCTNVL 87
           G  + SGS D+TVRFWDLR   C  V+
Sbjct: 767 GWMIASGSQDKTVRFWDLRVPSCVRVV 793

Mus musculus (taxid: 10090)

>sp|O94967|WDR47_HUMAN WD repeat-containing protein 47 OS=Homo sapiens GN=WDR47 PE=1 SV=1

 Score =  122 bits (305), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 50/87 (57%), Positives = 62/87 (71%)

Query: 1   MHDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWG 60
           MHDGT+RD+ F+E   +  ++LIS GAGDC IY TDC  GQ   ALSGH+GH+L+LY W 
Sbjct: 706 MHDGTIRDLAFMEGPESGGAILISAGAGDCNIYTTDCQRGQGLHALSGHTGHILALYTWS 765

Query: 61  GATVLSGSHDRTVRFWDLRTRGCTNVL 87
           G  + SGS D+TVRFWDLR   C  V+
Sbjct: 766 GWMIASGSQDKTVRFWDLRVPSCVRVV 792

Homo sapiens (taxid: 9606)

>sp|Q8MY12|MHCKC_DICDI Myosin heavy chain kinase C OS=Dictyostelium discoideum GN=mhkC PE=1 SV=1

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 8/86 (9%)

Query: 2   HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWGG 61
           H   ++ VC + +       L+  G+ D +IYV + ATG       GH G V +LY    
Sbjct: 632 HTRAIKSVCAMGN-------LLFSGSNDQQIYVWNLATGTILTNFQGHEGWVKTLYAHNN 684

Query: 62  ATVLSGSHDRTVRFWDLRTRGCTNVL 87
             + SGSHD T+R WDL+T  C N +
Sbjct: 685 -MLYSGSHDETIRIWDLKTTRCVNTI 709

Phosphorylates threonine at 'Thr-1823', 'Thr-1833' and 'Thr-2029' in the C-terminal tail region of myosin II heavy chain (mhcA) (By similarity). This phosphorylation is critical in actin-activated ATPase activity of the myosin and regulating the assembly and disassembly of myosin II filament. In vitro, catalytic domain phosphorylates mhcA, myelin basic protein, myosin regulatory light chain, casein and caldesmon. Drives the disassembly of myosin II filaments for efficient cytokinesis and recycling of myosin II that occurs during late cytokinesis. Can be activated in vitro by autophosphorylation.

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 7

>sp|C4YFX2|TUP1_CANAW Transcriptional repressor TUP1 OS=Candida albicans (strain WO-1) GN=TUP1 PE=4 SV=1

 Score = 53.1 bits (126), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 6/87 (6%)

Query: 3   DGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGG 61
           D  +R VCF  D       L++ GA D  I + D +T +  + L GH   + SL +   G
Sbjct: 254 DLYIRSVCFSPDGK-----LLATGAEDKLIRIWDLSTKRIIKILRGHEQDIYSLDFFPDG 308

Query: 62  ATVLSGSHDRTVRFWDLRTRGCTNVLT 88
             ++SGS DR+VR WDLRT  C+  L+
Sbjct: 309 DRLVSGSGDRSVRIWDLRTSQCSLTLS 335

Represses transcription by RNA polymerase II. Represses genes responsible for initiating filamentous growth and this repression is lifted under inducing environmental conditions.

Candida albicans (strain WO-1) (taxid: 294748)

>sp|P0CY34|TUP1_CANAL Transcriptional repressor TUP1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=TUP1 PE=1 SV=1

 Score = 53.1 bits (126), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 6/87 (6%)

Query: 3   DGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGG 61
           D  +R VCF  D       L++ GA D  I + D +T +  + L GH   + SL +   G
Sbjct: 255 DLYIRSVCFSPDGK-----LLATGAEDKLIRIWDLSTKRIIKILRGHEQDIYSLDFFPDG 309

Query: 62  ATVLSGSHDRTVRFWDLRTRGCTNVLT 88
             ++SGS DR+VR WDLRT  C+  L+
Sbjct: 310 DRLVSGSGDRSVRIWDLRTSQCSLTLS 336

Represses transcription by RNA polymerase II. Represses genes responsible for initiating filamentous growth and this repression is lifted under inducing environmental conditions.

Candida albicans (strain SC5314 / ATCC MYA-2876) (taxid: 237561)

>sp|Q3Y8L7|WDR69_CHLRE Outer row dynein assembly protein 16 OS=Chlamydomonas reinhardtii GN=ODA16 PE=1 SV=1

 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 1/73 (1%)

Query: 17  NKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRF 75
           N  S +I+ G+ D    + D  TGQ    L+GH   ++SL +N GG  +++GS D   R 
Sbjct: 188 NPQSTIIATGSMDNTAKLWDVETGQERATLAGHRAEIVSLGFNTGGDLIVTGSFDHDSRL 247

Query: 76  WDLRTRGCTNVLT 88
           WD+RT  C +VL+
Sbjct: 248 WDVRTGQCVHVLS 260

Functions as a cargo-specific adapter between intraflagellar transport (IFT) particles and outer row dynein. Required for efficient dynein-mediated transport into the flagellar compartment.

Chlamydomonas reinhardtii (taxid: 3055)

>sp|P16649|TUP1_YEAST General transcriptional corepressor TUP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TUP1 PE=1 SV=2

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/87 (37%), Positives = 43/87 (49%), Gaps = 6/87 (6%)

Query: 3   DGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGG 61
           D  +R VCF  D        ++ GA D  I + D    +    L GH   + SL Y   G
Sbjct: 443 DLYIRSVCFSPDGK-----FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSG 497

Query: 62  ATVLSGSHDRTVRFWDLRTRGCTNVLT 88
             ++SGS DRTVR WDLRT  C+  L+
Sbjct: 498 DKLVSGSGDRTVRIWDLRTGQCSLTLS 524

Acts as component of the CYC8-TUP1 corepressor complex which is involved in the repression of many genes in a wide variety of physiological processes including heme-regulated and catabolite repressed genes. May also be involved in the derepression of at least some target genes. The complex is recruited to target genes by interaction with DNA-bound transcriptional repressors, like MATALPHA2, MIG1, RFX1 and SKO1. The complex recruits histone deacetylases to produce a repressive chromatin structure, interacts with hypoacetylated N-terminal tails of histones H3 and H4 that have been programmed for repression by the action of histone deacetylases and interferes directly with the transcriptional machinery by associating with the RNA polymerase II mediator complex.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P56094|TUP1_KLULA General transcriptional corepressor TUP1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=TUP1 PE=1 SV=2

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/87 (37%), Positives = 43/87 (49%), Gaps = 6/87 (6%)

Query: 3   DGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGG 61
           D  +R VCF  D        ++ GA D  I + D  T +    L GH   + SL Y   G
Sbjct: 406 DLYIRSVCFSPDGK-----FLATGAEDKLIRIWDLETKKIVMTLKGHEQDIYSLDYFPSG 460

Query: 62  ATVLSGSHDRTVRFWDLRTRGCTNVLT 88
             ++SGS DRTVR WDL T  C+  L+
Sbjct: 461 NKLVSGSGDRTVRIWDLTTGTCSLTLS 487

Represses transcription by RNA polymerase II.

Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590)

>sp|Q9V3J8|WDS_DROME Protein will die slowly OS=Drosophila melanogaster GN=wds PE=2 SV=1

 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 6/87 (6%)

Query: 2   HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWG 60
           H   + DV +  D    S LL+SG + D  + V + +TG++ + L GHS +V    +N  
Sbjct: 113 HKLGISDVAWSSD----SRLLVSG-SDDKTLKVWELSTGKSLKTLKGHSNYVFCCNFNPQ 167

Query: 61  GATVLSGSHDRTVRFWDLRTRGCTNVL 87
              ++SGS D +VR WD+RT  C   L
Sbjct: 168 SNLIVSGSFDESVRIWDVRTGKCLKTL 194

Essential for viability.

Drosophila melanogaster (taxid: 7227)

>sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1

 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 6/87 (6%)

Query: 2    HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWG 60
            H  +V  V F  D        ++ G+GD  I + D A+G   Q L GH G V S+ ++  
Sbjct: 966  HGSSVLSVAFSPDGQR-----VASGSGDKTIKIWDTASGTCTQTLEGHGGSVWSVAFSPD 1020

Query: 61   GATVLSGSHDRTVRFWDLRTRGCTNVL 87
            G  V SGS D+T++ WD  +  CT  L
Sbjct: 1021 GQRVASGSDDKTIKIWDTASGTCTQTL 1047

Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c.

Podospora anserina (taxid: 5145)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	93
383858427	955	PREDICTED: WD repeat-containing protein	1.0	0.097	0.849	2e-44
380013168	956	PREDICTED: LOW QUALITY PROTEIN: WD repea	1.0	0.097	0.849	2e-44
328776065	955	PREDICTED: WD repeat-containing protein	1.0	0.097	0.849	2e-44
340716254	955	PREDICTED: WD repeat-containing protein	1.0	0.097	0.849	2e-44
350406409	955	PREDICTED: WD repeat-containing protein	1.0	0.097	0.849	2e-44
270003148	490	hypothetical protein TcasGA2_TC001582 [T	1.0	0.189	0.817	8e-44
328704358	903	PREDICTED: WD repeat-containing protein	0.978	0.100	0.846	1e-43
332022047	966	WD repeat-containing protein 47 [Acromyr	1.0	0.096	0.827	3e-43
189235180	473	PREDICTED: similar to AGAP006113-PA, par	1.0	0.196	0.817	2e-41
307201082	330	WD repeat-containing protein 47 [Harpegn	1.0	0.281	0.849	2e-41

>gi|383858427|ref|XP_003704703.1| PREDICTED: WD repeat-containing protein 47-like [Megachile rotundata]

 Score =  182 bits (463), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 79/93 (84%), Positives = 86/93 (92%)

Query: 1   MHDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWG 60
           MHDGTVRD+CF+EDTSNKSSLLISGGAGDCKIYVTDCATG  FQALSGHSGHVL+LYNWG
Sbjct: 738 MHDGTVRDLCFLEDTSNKSSLLISGGAGDCKIYVTDCATGTPFQALSGHSGHVLTLYNWG 797

Query: 61  GATVLSGSHDRTVRFWDLRTRGCTNVLTPITVP 93
           GA  +SGS D+TVRFWDLRTRGC N++TP TVP
Sbjct: 798 GAMFVSGSQDKTVRFWDLRTRGCVNMVTPATVP 830

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380013168|ref|XP_003690639.1| PREDICTED: LOW QUALITY PROTEIN: WD repeat-containing protein 47-like [Apis florea]

 Score =  182 bits (463), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 79/93 (84%), Positives = 86/93 (92%)

Query: 1   MHDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWG 60
           MHDGTVRD+CF+EDTSNKSSLLISGGAGDCKIYVTDCATG  FQALSGHSGHVL+LYNWG
Sbjct: 739 MHDGTVRDLCFLEDTSNKSSLLISGGAGDCKIYVTDCATGTPFQALSGHSGHVLTLYNWG 798

Query: 61  GATVLSGSHDRTVRFWDLRTRGCTNVLTPITVP 93
           GA  +SGS D+TVRFWDLRTRGC N++TP TVP
Sbjct: 799 GAMFVSGSQDKTVRFWDLRTRGCVNMVTPATVP 831

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328776065|ref|XP_394247.4| PREDICTED: WD repeat-containing protein 47-like [Apis mellifera]

 Score =  182 bits (463), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 79/93 (84%), Positives = 86/93 (92%)

Query: 1   MHDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWG 60
           MHDGTVRD+CF+EDTSNKSSLLISGGAGDCKIYVTDCATG  FQALSGHSGHVL+LYNWG
Sbjct: 738 MHDGTVRDLCFLEDTSNKSSLLISGGAGDCKIYVTDCATGTPFQALSGHSGHVLTLYNWG 797

Query: 61  GATVLSGSHDRTVRFWDLRTRGCTNVLTPITVP 93
           GA  +SGS D+TVRFWDLRTRGC N++TP TVP
Sbjct: 798 GAMFVSGSQDKTVRFWDLRTRGCVNMVTPATVP 830

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340716254|ref|XP_003396614.1| PREDICTED: WD repeat-containing protein 47-like [Bombus terrestris]

 Score =  182 bits (463), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 79/93 (84%), Positives = 86/93 (92%)

Query: 1   MHDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWG 60
           MHDGTVRD+CF+EDTSNKSSLLISGGAGDCKIYVTDCATG  FQALSGHSGHVL+LYNWG
Sbjct: 738 MHDGTVRDLCFLEDTSNKSSLLISGGAGDCKIYVTDCATGTPFQALSGHSGHVLTLYNWG 797

Query: 61  GATVLSGSHDRTVRFWDLRTRGCTNVLTPITVP 93
           GA  +SGS D+TVRFWDLRTRGC N++TP TVP
Sbjct: 798 GAMFVSGSQDKTVRFWDLRTRGCVNMVTPATVP 830

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350406409|ref|XP_003487763.1| PREDICTED: WD repeat-containing protein 47-like [Bombus impatiens]

 Score =  182 bits (462), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 79/93 (84%), Positives = 86/93 (92%)

Query: 1   MHDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWG 60
           MHDGTVRD+CF+EDTSNKSSLLISGGAGDCKIYVTDCATG  FQALSGHSGHVL+LYNWG
Sbjct: 738 MHDGTVRDLCFLEDTSNKSSLLISGGAGDCKIYVTDCATGTPFQALSGHSGHVLTLYNWG 797

Query: 61  GATVLSGSHDRTVRFWDLRTRGCTNVLTPITVP 93
           GA  +SGS D+TVRFWDLRTRGC N++TP TVP
Sbjct: 798 GAMFVSGSQDKTVRFWDLRTRGCVNMVTPATVP 830

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270003148|gb|EEZ99595.1| hypothetical protein TcasGA2_TC001582 [Tribolium castaneum]

 Score =  180 bits (457), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 76/93 (81%), Positives = 86/93 (92%)

Query: 1   MHDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWG 60
           MHDGT+RD+CF+EDTSNKSSLLISGGAGDCKIYVTDCATG  FQALSGH+GH+LSLY WG
Sbjct: 304 MHDGTIRDLCFLEDTSNKSSLLISGGAGDCKIYVTDCATGTPFQALSGHTGHILSLYTWG 363

Query: 61  GATVLSGSHDRTVRFWDLRTRGCTNVLTPITVP 93
           GA  +SGSHD+TVRFWDLRTRGC N++TP T+P
Sbjct: 364 GAMFVSGSHDKTVRFWDLRTRGCVNMVTPCTIP 396

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328704358|ref|XP_001949932.2| PREDICTED: WD repeat-containing protein 47-like [Acyrthosiphon pisum]

 Score =  180 bits (456), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 77/91 (84%), Positives = 85/91 (93%)

Query: 1   MHDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWG 60
           MHDGTVRDVCFIEDT+N+SSLLISGGAGDCKIYVTDC TGQ +QALSGHSGH+L+LYNWG
Sbjct: 685 MHDGTVRDVCFIEDTTNRSSLLISGGAGDCKIYVTDCETGQPYQALSGHSGHILTLYNWG 744

Query: 61  GATVLSGSHDRTVRFWDLRTRGCTNVLTPIT 91
           GA  +SGSHDRT+RFWDLRTRGC NV+TP T
Sbjct: 745 GAMFVSGSHDRTIRFWDLRTRGCVNVVTPNT 775

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332022047|gb|EGI62373.1| WD repeat-containing protein 47 [Acromyrmex echinatior]

 Score =  178 bits (452), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 77/93 (82%), Positives = 84/93 (90%)

Query: 1   MHDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWG 60
           MHDGTVRD+CF+EDTSNKSSLLISGGAGDCKIYVTDC TG  FQALSGHSGHVL+LYNWG
Sbjct: 749 MHDGTVRDLCFLEDTSNKSSLLISGGAGDCKIYVTDCTTGTPFQALSGHSGHVLTLYNWG 808

Query: 61  GATVLSGSHDRTVRFWDLRTRGCTNVLTPITVP 93
           GA  +SGS D+TVRFWDLRTR C N++TP TVP
Sbjct: 809 GAMFVSGSQDKTVRFWDLRTRSCVNMVTPATVP 841

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189235180|ref|XP_001810207.1| PREDICTED: similar to AGAP006113-PA, partial [Tribolium castaneum]

 Score =  172 bits (437), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 76/93 (81%), Positives = 86/93 (92%)

Query: 1   MHDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWG 60
           MHDGT+RD+CF+EDTSNKSSLLISGGAGDCKIYVTDCATG  FQALSGH+GH+LSLY WG
Sbjct: 304 MHDGTIRDLCFLEDTSNKSSLLISGGAGDCKIYVTDCATGTPFQALSGHTGHILSLYTWG 363

Query: 61  GATVLSGSHDRTVRFWDLRTRGCTNVLTPITVP 93
           GA  +SGSHD+TVRFWDLRTRGC N++TP T+P
Sbjct: 364 GAMFVSGSHDKTVRFWDLRTRGCVNMVTPCTIP 396

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307201082|gb|EFN81014.1| WD repeat-containing protein 47 [Harpegnathos saltator]

 Score =  172 bits (437), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 79/93 (84%), Positives = 86/93 (92%)

Query: 1   MHDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWG 60
           MHDGTVRD+CF+EDTSNKSSLLISGGAGDCKIYVTDCATG  FQALSGHSGHVL+LYNWG
Sbjct: 113 MHDGTVRDLCFLEDTSNKSSLLISGGAGDCKIYVTDCATGTPFQALSGHSGHVLTLYNWG 172

Query: 61  GATVLSGSHDRTVRFWDLRTRGCTNVLTPITVP 93
           GA  +SGS D+TVRFWDLRTRGC N++TP TVP
Sbjct: 173 GAMFVSGSQDKTVRFWDLRTRGCVNMVTPATVP 205

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	93
FB|FBgn0034931	348	CG2812 [Drosophila melanogaste	0.935	0.25	0.666	1.8e-30
UNIPROTKB|O94967	919	WDR47 "WD repeat-containing pr	0.935	0.094	0.574	6.3e-25
MGI|MGI:2139593	920	Wdr47 "WD repeat domain 47" [M	0.935	0.094	0.574	6.3e-25
WB|WBGene00019434	942	nmtn-1 [Caenorhabditis elegans	0.946	0.093	0.522	8.3e-22
DICTYBASE|DDB_G0290687	780	mhkC "myosin heavy chain kinas	0.838	0.1	0.383	1.2e-08
POMBASE|SPBC713.04c	854	SPBC713.04c "U3 snoRNP-associa	0.860	0.093	0.341	7.3e-08
ASPGD|ASPL0000008575	618	AN6217 [Emericella nidulans (t	0.720	0.108	0.426	1.6e-07
FB|FBgn0040066	361	wds "will die slowly" [Drosoph	0.763	0.196	0.383	2.4e-07
CGD|CAL0005939	512	TUP1 [Candida albicans (taxid:	0.838	0.152	0.380	4.3e-07
UNIPROTKB|P0CY34	512	TUP1 "Transcriptional represso	0.838	0.152	0.380	4.3e-07

FB|FBgn0034931 CG2812 [Drosophila melanogaster (taxid:7227)]

 Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
 Identities = 58/87 (66%), Positives = 69/87 (79%)

Query:     1 MHDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWG 60
             MHDGTVRD+CF++D+S KS LL SGGAGDCKIY+TDC TG  FQA SGH+GH+LSLY+W 
Sbjct:   131 MHDGTVRDMCFLDDSSTKSRLLASGGAGDCKIYITDCGTGTPFQAYSGHTGHILSLYSWN 190

Query:    61 GATVLSGSHDRTVRFWDLRTRGCTNVL 87
              A  +SGS D+T+RFWDLR     N L
Sbjct:   191 NAMFVSGSQDQTIRFWDLRVNVSVNTL 217

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|O94967 WDR47 "WD repeat-containing protein 47" [Homo sapiens (taxid:9606)]

 Score = 295 (108.9 bits), Expect = 6.3e-25, P = 6.3e-25
 Identities = 50/87 (57%), Positives = 62/87 (71%)

Query:     1 MHDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWG 60
             MHDGT+RD+ F+E   +  ++LIS GAGDC IY TDC  GQ   ALSGH+GH+L+LY W 
Sbjct:   706 MHDGTIRDLAFMEGPESGGAILISAGAGDCNIYTTDCQRGQGLHALSGHTGHILALYTWS 765

Query:    61 GATVLSGSHDRTVRFWDLRTRGCTNVL 87
             G  + SGS D+TVRFWDLR   C  V+
Sbjct:   766 GWMIASGSQDKTVRFWDLRVPSCVRVV 792

GO:0005737 "cytoplasm" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

MGI|MGI:2139593 Wdr47 "WD repeat domain 47" [Mus musculus (taxid:10090)]

 Score = 295 (108.9 bits), Expect = 6.3e-25, P = 6.3e-25
 Identities = 50/87 (57%), Positives = 62/87 (71%)

Query:     1 MHDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWG 60
             MHDGT+RD+ F+E   +  ++LIS GAGDC IY TDC  GQ   ALSGH+GH+L+LY W 
Sbjct:   707 MHDGTIRDLAFMEGPESGGAILISAGAGDCNIYTTDCQRGQGLHALSGHTGHILALYTWS 766

Query:    61 GATVLSGSHDRTVRFWDLRTRGCTNVL 87
             G  + SGS D+TVRFWDLR   C  V+
Sbjct:   767 GWMIASGSQDKTVRFWDLRVPSCVRVV 793

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0008150 "biological_process" evidence=ND

WB|WBGene00019434 nmtn-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 266 (98.7 bits), Expect = 8.3e-22, P = 8.3e-22
 Identities = 47/90 (52%), Positives = 65/90 (72%)

Query:     2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWG- 60
             HDGTVRD+ FIE + N+S++L+SGGAG+C + VTDC TGQ  Q++ GH+  +L LY W  
Sbjct:   725 HDGTVRDLIFIESSINRSTILVSGGAGNCHLNVTDCNTGQLIQSMKGHTAPILGLYTWSQ 784

Query:    61 -GATVLSGSHDRTVRFWDLRTRGCTNVLTP 89
              G   +S S D+T+RFWDLR +   NV++P
Sbjct:   785 AGNQFVSCSQDKTIRFWDLRQQTAVNVISP 814

GO:0040002 "collagen and cuticulin-based cuticle development" evidence=IMP

DICTYBASE|DDB_G0290687 mhkC "myosin heavy chain kinase C" [Dictyostelium discoideum (taxid:44689)]

 Score = 142 (55.0 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 33/86 (38%), Positives = 45/86 (52%)

Query:     2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWGG 61
             H   ++ VC +       +LL SG + D +IYV + ATG       GH G V +LY    
Sbjct:   632 HTRAIKSVCAM------GNLLFSG-SNDQQIYVWNLATGTILTNFQGHEGWVKTLYAHNN 684

Query:    62 ATVLSGSHDRTVRFWDLRTRGCTNVL 87
               + SGSHD T+R WDL+T  C N +
Sbjct:   685 M-LYSGSHDETIRIWDLKTTRCVNTI 709

GO:0031037 "myosin II filament disassembly" evidence=IMP

GO:0005826 "actomyosin contractile ring" evidence=IDA

GO:0000910 "cytokinesis" evidence=IMP

GO:0016905 "myosin heavy chain kinase activity" evidence=IEA;IMP

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0005938 "cell cortex" evidence=IEA;IDA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS;IDA

GO:0018107 "peptidyl-threonine phosphorylation" evidence=IDA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;IC

GO:0045159 "myosin II binding" evidence=ISS

GO:0016740 "transferase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0032154 "cleavage furrow" evidence=IEA

POMBASE|SPBC713.04c SPBC713.04c "U3 snoRNP-associated protein Utp1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 135 (52.6 bits), Expect = 7.3e-08, P = 7.3e-08
 Identities = 29/85 (34%), Positives = 49/85 (57%)

Query:    10 CFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGS 68
             C   D S +  ++ +G     +I++    TGQ  + L+GH G V SL +N  G+ + SGS
Sbjct:   429 CIAVDPSGE--IVCAGSQDSFEIFMWSVQTGQLLETLAGHEGPVSSLSFNSSGSLLASGS 486

Query:    69 HDRTVRFWDLRTRGCTNVLTPITVP 93
              D+TVR WD+ +R  + ++ P+ +P
Sbjct:   487 WDKTVRIWDIFSR--SGIVEPLPIP 509

GO:0005730 "nucleolus" evidence=IDA

GO:0005732 "small nucleolar ribonucleoprotein complex" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0006364 "rRNA processing" evidence=ISO

GO:0030515 "snoRNA binding" evidence=ISO

ASPGD|ASPL0000008575 AN6217 [Emericella nidulans (taxid:162425)]

 Score = 130 (50.8 bits), Expect = 1.6e-07, P = 1.6e-07
 Identities = 29/68 (42%), Positives = 41/68 (60%)

Query:    20 SLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWGGATVLSGSHDRTVRFWDLR 79
             ++L+SGG  D ++ V + ATG++   L GH+  V  L      T +SGS D T+R WDLR
Sbjct:   303 NILVSGGC-DREVRVWNMATGESIYLLRGHTSTVRCLKMSDKNTAISGSRDTTLRIWDLR 361

Query:    80 TRGCTNVL 87
             T  C +VL
Sbjct:   362 TGTCRSVL 369

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

FB|FBgn0040066 wds "will die slowly" [Drosophila melanogaster (taxid:7227)]

 Score = 125 (49.1 bits), Expect = 2.4e-07, P = 2.4e-07
 Identities = 28/73 (38%), Positives = 43/73 (58%)

Query:    16 SNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVR 74
             S+ S LL+SG + D  + V + +TG++ + L GHS +V    +N     ++SGS D +VR
Sbjct:   123 SSDSRLLVSG-SDDKTLKVWELSTGKSLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 181

Query:    75 FWDLRTRGCTNVL 87
              WD+RT  C   L
Sbjct:   182 IWDVRTGKCLKTL 194

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=IPI

GO:0006338 "chromatin remodeling" evidence=IDA

GO:0004402 "histone acetyltransferase activity" evidence=IDA

GO:0016573 "histone acetylation" evidence=IDA

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0007095 "mitotic G2 DNA damage checkpoint" evidence=IGI

GO:0048188 "Set1C/COMPASS complex" evidence=IDA

GO:0022008 "neurogenesis" evidence=IMP

GO:0051568 "histone H3-K4 methylation" evidence=IMP;IDA

GO:0044665 "MLL1/2 complex" evidence=ISS

GO:0044666 "MLL3/4 complex" evidence=IDA

CGD|CAL0005939 TUP1 [Candida albicans (taxid:5476)]

 Score = 125 (49.1 bits), Expect = 4.3e-07, P = 4.3e-07
 Identities = 32/84 (38%), Positives = 46/84 (54%)

Query:     6 VRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATV 64
             +R VCF  D       L++ GA D  I + D +T +  + L GH   + SL +   G  +
Sbjct:   258 IRSVCFSPDGK-----LLATGAEDKLIRIWDLSTKRIIKILRGHEQDIYSLDFFPDGDRL 312

Query:    65 LSGSHDRTVRFWDLRTRGCTNVLT 88
             +SGS DR+VR WDLRT  C+  L+
Sbjct:   313 VSGSGDRSVRIWDLRTSQCSLTLS 336

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IGI;ISS;IMP

GO:0030447 "filamentous growth" evidence=IMP

GO:0016337 "cell-cell adhesion" evidence=IMP

GO:0045827 "negative regulation of isoprenoid metabolic process" evidence=IMP

GO:0009372 "quorum sensing" evidence=IMP

GO:0044409 "entry into host" evidence=IMP

GO:0051834 "evasion or tolerance of defenses of other organism involved in symbiotic interaction" evidence=IMP

GO:0009405 "pathogenesis" evidence=IMP

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0035690 "cellular response to drug" evidence=IMP

GO:0071280 "cellular response to copper ion" evidence=IMP

GO:0017053 "transcriptional repressor complex" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0006342 "chromatin silencing" evidence=IEA

GO:0007070 "negative regulation of transcription from RNA polymerase II promoter during mitosis" evidence=IEA

GO:0061392 "regulation of transcription from RNA polymerase II promoter in response to osmotic stress" evidence=IEA

GO:0043486 "histone exchange" evidence=IEA

GO:2001020 "regulation of response to DNA damage stimulus" evidence=IEA

GO:0000433 "negative regulation of transcription from RNA polymerase II promoter by glucose" evidence=IEA

GO:0035955 "negative regulation of dipeptide transport by negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0016584 "nucleosome positioning" evidence=IEA

GO:0043156 "chromatin remodeling in response to cation stress" evidence=IEA

GO:0061418 "regulation of transcription from RNA polymerase II promoter in response to hypoxia" evidence=IEA

GO:2000531 "regulation of fatty acid biosynthetic process by regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0001198 "negative regulation of mating-type specific transcription from RNA polymerase II promoter" evidence=IEA

GO:1900429 "negative regulation of filamentous growth of a population of unicellular organisms" evidence=IMP

GO:0044182 "filamentous growth of a population of unicellular organisms" evidence=IMP

GO:0097308 "cellular response to farnesol" evidence=IMP

GO:0036171 "filamentous growth of a population of unicellular organisms in response to chemical stimulus" evidence=IMP

GO:0044114 "development of symbiont in host" evidence=IMP

GO:0009267 "cellular response to starvation" evidence=IMP

GO:0036170 "filamentous growth of a population of unicellular organisms in response to starvation" evidence=IMP

GO:0036180 "filamentous growth of a population of unicellular organisms in response to biotic stimulus" evidence=IMP

GO:0036166 "phenotypic switching" evidence=IMP

GO:0071216 "cellular response to biotic stimulus" evidence=IMP

GO:0036033 "mediator complex binding" evidence=IEA

GO:0042393 "histone binding" evidence=IEA

GO:0043130 "ubiquitin binding" evidence=IEA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IEA

GO:0003714 "transcription corepressor activity" evidence=IEA

GO:0042826 "histone deacetylase binding" evidence=IEA

GO:0001191 "RNA polymerase II transcription factor binding transcription factor activity involved in negative regulation of transcription" evidence=IEA

UNIPROTKB|P0CY34 TUP1 "Transcriptional repressor TUP1" [Candida albicans SC5314 (taxid:237561)]

 Score = 125 (49.1 bits), Expect = 4.3e-07, P = 4.3e-07
 Identities = 32/84 (38%), Positives = 46/84 (54%)

Query:     6 VRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATV 64
             +R VCF  D       L++ GA D  I + D +T +  + L GH   + SL +   G  +
Sbjct:   258 IRSVCFSPDGK-----LLATGAEDKLIRIWDLSTKRIIKILRGHEQDIYSLDFFPDGDRL 312

Query:    65 LSGSHDRTVRFWDLRTRGCTNVLT 88
             +SGS DR+VR WDLRT  C+  L+
Sbjct:   313 VSGSGDRSVRIWDLRTSQCSLTLS 336

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0009267 "cellular response to starvation" evidence=IMP

GO:0009372 "quorum sensing" evidence=IMP

GO:0009405 "pathogenesis" evidence=IMP

GO:0016337 "cell-cell adhesion" evidence=IMP

GO:0030447 "filamentous growth" evidence=IMP

GO:0035690 "cellular response to drug" evidence=IMP

GO:0036166 "phenotypic switching" evidence=IMP

GO:0036170 "filamentous growth of a population of unicellular organisms in response to starvation" evidence=IMP

GO:0036171 "filamentous growth of a population of unicellular organisms in response to chemical stimulus" evidence=IMP

GO:0036180 "filamentous growth of a population of unicellular organisms in response to biotic stimulus" evidence=IMP

GO:0044114 "development of symbiont in host" evidence=IMP

GO:0044182 "filamentous growth of a population of unicellular organisms" evidence=IMP

GO:0044409 "entry into host" evidence=IMP

GO:0045827 "negative regulation of isoprenoid metabolic process" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IGI;IMP

GO:0051834 "evasion or tolerance of defenses of other organism involved in symbiotic interaction" evidence=IMP

GO:0071216 "cellular response to biotic stimulus" evidence=IMP

GO:0071280 "cellular response to copper ion" evidence=IMP

GO:0097308 "cellular response to farnesol" evidence=IMP

GO:1900429 "negative regulation of filamentous growth of a population of unicellular organisms" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8CGF6	WDR47_MOUSE	No assigned EC number	0.5747	0.9354	0.0945	yes	N/A
O94967	WDR47_HUMAN	No assigned EC number	0.5747	0.9354	0.0946	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	93
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-11
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	8e-10
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-09
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-08
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-08
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-07
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-07
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-05
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-04
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	8e-04
smart00320	40	smart00320, WD40, WD40 repeats	0.001
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	0.002
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	0.004

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 56.2 bits (136), Expect = 6e-11
 Identities = 33/88 (37%), Positives = 43/88 (48%), Gaps = 6/88 (6%)

Query: 2   HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWG 60
           H G V  V F  D      LL S   G  K++  D +TG+    L GH   V S+ ++  
Sbjct: 176 HTGEVNSVAFSPD---GEKLLSSSSDGTIKLW--DLSTGKCLGTLRGHENGVNSVAFSPD 230

Query: 61  GATVLSGSHDRTVRFWDLRTRGCTNVLT 88
           G  + SGS D T+R WDLRT  C   L+
Sbjct: 231 GYLLASGSEDGTIRVWDLRTGECVQTLS 258

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 53.1 bits (128), Expect = 8e-10
 Identities = 31/89 (34%), Positives = 41/89 (46%), Gaps = 6/89 (6%)

Query: 1   MHDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNW 59
            H   V  V F  D       ++S  + D  I V D  TG+    L GH+  V S+ ++ 
Sbjct: 91  GHTSYVSSVAFSPDGR-----ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP 145

Query: 60  GGATVLSGSHDRTVRFWDLRTRGCTNVLT 88
            G  V S S D T++ WDLRT  C   LT
Sbjct: 146 DGTFVASSSQDGTIKLWDLRTGKCVATLT 174

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 50.8 bits (122), Expect = 5e-09
 Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 6/88 (6%)

Query: 2   HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWG 60
           H   V  V F  D        ++  + D  I + D  TG+    L+GH+G V S+ ++  
Sbjct: 134 HTDWVNSVAFSPD-----GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPD 188

Query: 61  GATVLSGSHDRTVRFWDLRTRGCTNVLT 88
           G  +LS S D T++ WDL T  C   L 
Sbjct: 189 GEKLLSSSSDGTIKLWDLSTGKCLGTLR 216

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 49.3 bits (118), Expect = 2e-08
 Identities = 35/89 (39%), Positives = 44/89 (49%), Gaps = 8/89 (8%)

Query: 2  HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHV--LSLYNW 59
          H G V  V F    S    LL +G  GD  I V D  TG+  + L GH+G V  ++    
Sbjct: 8  HTGGVTCVAF----SPDGKLLATGS-GDGTIKVWDLETGELLRTLKGHTGPVRDVAASAD 62

Query: 60 GGATVLSGSHDRTVRFWDLRTRGCTNVLT 88
          G   + SGS D+T+R WDL T  C   LT
Sbjct: 63 GT-YLASGSSDKTIRLWDLETGECVRTLT 90

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 47.7 bits (114), Expect = 6e-08
 Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 6/77 (7%)

Query: 2   HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWG 60
           H+  V  V F     +    L++ G+ D  I V D  TG+  Q LSGH+  V SL ++  
Sbjct: 218 HENGVNSVAF-----SPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPD 272

Query: 61  GATVLSGSHDRTVRFWD 77
           G  + SGS D T+R WD
Sbjct: 273 GKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 47.3 bits (113), Expect = 1e-07
 Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 6/91 (6%)

Query: 2   HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWG 60
           H G VRDV      ++ + L         +++  D  TG+  + L+GH+ +V S+ ++  
Sbjct: 50  HTGPVRDVAAS---ADGTYLASGSSDKTIRLW--DLETGECVRTLTGHTSYVSSVAFSPD 104

Query: 61  GATVLSGSHDRTVRFWDLRTRGCTNVLTPIT 91
           G  + S S D+T++ WD+ T  C   L   T
Sbjct: 105 GRILSSSSRDKTIKVWDVETGKCLTTLRGHT 135

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 45.8 bits (107), Expect = 3e-07
 Identities = 31/80 (38%), Positives = 45/80 (56%), Gaps = 5/80 (6%)

Query: 2   HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQ-ALSGHSGHVLSLYNWG 60
           H   V  + F    S    LLI+ G+ D  I + D +TG+  +  LSGHS  V+S ++  
Sbjct: 197 HTDPVSSLAF----SPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPD 252

Query: 61  GATVLSGSHDRTVRFWDLRT 80
           G+ + SGS D T+R WDLR+
Sbjct: 253 GSLLASGSSDGTIRLWDLRS 272

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 41.6 bits (96), Expect = 1e-05
 Identities = 31/82 (37%), Positives = 41/82 (50%), Gaps = 3/82 (3%)

Query: 12  IEDTSNKSSLLISGGAGDCKIYVTDCATG-QAFQALSGHSGHVLSL-YNWGGATVLSGSH 69
           +   S   SLL SG + D  I + D  +     + LSGHS  VLS+ ++  G  + SGS 
Sbjct: 246 VSSFSPDGSLLASGSS-DGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSS 304

Query: 70  DRTVRFWDLRTRGCTNVLTPIT 91
           D TVR WDL T    + LT   
Sbjct: 305 DGTVRLWDLETGKLLSSLTLKG 326

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 38.1 bits (87), Expect = 2e-04
 Identities = 33/79 (41%), Positives = 43/79 (54%), Gaps = 4/79 (5%)

Query: 2   HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWGG 61
           H+G V  + F  D     SLL+SGG+ D  I + D  TG+  + L GHS  +   ++  G
Sbjct: 327 HEGPVSSLSFSPD----GSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDG 382

Query: 62  ATVLSGSHDRTVRFWDLRT 80
             V SGS D TVR WDL T
Sbjct: 383 RVVSSGSTDGTVRLWDLST 401

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 36.2 bits (82), Expect = 8e-04
 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 5/90 (5%)

Query: 2   HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCAT-GQAFQALSGHSGHVLSL-YNW 59
           HD +V  +     + + +S+L++  + D  + + D +T G+  + L GHS  V SL ++ 
Sbjct: 108 HDSSVSKLAL--SSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSP 165

Query: 60  GGATVLSGSH-DRTVRFWDLRTRGCTNVLT 88
            G  + SGS  D T++ WDLRT    + L 
Sbjct: 166 DGKLLASGSSLDGTIKLWDLRTGKPLSTLA 195

Length = 466

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 33.1 bits (76), Expect = 0.001
 Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 1/40 (2%)

Query: 39 TGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWD 77
          +G+  + L GH+G V S+ ++  G  + SGS D T++ WD
Sbjct: 1  SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 32.7 bits (75), Expect = 0.002
 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)

Query: 46 LSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWD 77
          L GH+G V S+ ++  G  + SGS D TVR WD
Sbjct: 7  LKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 34.3 bits (77), Expect = 0.004
 Identities = 33/90 (36%), Positives = 40/90 (44%), Gaps = 9/90 (10%)

Query: 2   HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALS--GHSGHV--LSLY 57
           H  +V  V F    S    LL SG   D  + + D  TG+   +L+  GH G V  LS  
Sbjct: 283 HSSSVLSVAF----SPDGKLLASGS-SDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFS 337

Query: 58  NWGGATVLSGSHDRTVRFWDLRTRGCTNVL 87
             G   V  GS D T+R WDLRT      L
Sbjct: 338 PDGSLLVSGGSDDGTIRLWDLRTGKPLKTL 367

Length = 466

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	93
KOG0272|consensus	459		99.83
KOG0271|consensus	480		99.82
KOG0263|consensus	707		99.8
KOG0295|consensus	406		99.8
KOG0266|consensus	456		99.78
PTZ00421	493	coronin; Provisional	99.77
KOG0266|consensus	456		99.76
KOG0279|consensus	315		99.75
KOG0271|consensus	480		99.75
KOG0286|consensus	343		99.75
KOG0286|consensus	343		99.73
KOG0285|consensus	460		99.73
KOG0272|consensus	459		99.72
PTZ00421	493	coronin; Provisional	99.71
KOG0284|consensus	464		99.71
PTZ00420	568	coronin; Provisional	99.71
KOG0316|consensus	307		99.7
KOG0319|consensus	775		99.7
KOG0285|consensus	460		99.7
KOG0291|consensus	893		99.7
KOG0319|consensus	775		99.69
KOG0263|consensus	707		99.69
KOG0302|consensus	440		99.69
KOG0284|consensus	464		99.68
KOG0265|consensus	338		99.68
KOG0282|consensus	503		99.68
KOG0292|consensus	1202		99.68
KOG0273|consensus	524		99.68
KOG0318|consensus	603		99.67
KOG0315|consensus	311		99.67
KOG0265|consensus	338		99.65
KOG0273|consensus	524		99.62
KOG0283|consensus	712		99.62
PTZ00420	568	coronin; Provisional	99.61
KOG0264|consensus	422		99.61
KOG0264|consensus	422		99.6
KOG0276|consensus	794		99.6
KOG0289|consensus	506		99.6
KOG0303|consensus	472		99.59
KOG0296|consensus	399		99.59
KOG0275|consensus	508		99.59
KOG0281|consensus	499		99.58
KOG0647|consensus	347		99.58
KOG0279|consensus	315		99.58
KOG0275|consensus	508		99.58
KOG0295|consensus	406		99.57
KOG1273|consensus	405		99.56
KOG1034|consensus	385		99.56
KOG0643|consensus	327		99.56
KOG0315|consensus	311		99.55
KOG0277|consensus	311		99.55
KOG0308|consensus	735		99.54
KOG0645|consensus	312		99.54
KOG0281|consensus	499		99.54
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.54
KOG0647|consensus	347		99.52
PLN00181	793	protein SPA1-RELATED; Provisional	99.52
KOG0316|consensus	307		99.51
KOG1407|consensus	313		99.51
KOG0310|consensus	487		99.51
KOG0269|consensus	839		99.51
KOG0313|consensus	423		99.51
KOG0274|consensus	537		99.51
KOG0274|consensus	537		99.5
KOG0282|consensus	503		99.5
KOG0641|consensus	350		99.5
KOG0291|consensus	893		99.49
KOG0277|consensus	311		99.49
KOG0276|consensus	794		99.49
KOG0640|consensus	430		99.49
KOG0294|consensus	362		99.48
KOG0283|consensus	712		99.48
KOG0973|consensus	942		99.47
KOG0292|consensus	1202		99.47
KOG0306|consensus	888		99.47
KOG0294|consensus	362		99.46
PLN00181	793	protein SPA1-RELATED; Provisional	99.45
KOG0645|consensus	312		99.45
KOG0305|consensus	484		99.45
KOG0303|consensus	472		99.45
KOG0649|consensus	325		99.44
KOG0639|consensus	705		99.43
KOG0278|consensus	334		99.43
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.43
KOG1407|consensus	313		99.42
KOG2394|consensus	636		99.42
KOG0296|consensus	399		99.42
KOG0299|consensus	479		99.41
KOG0302|consensus	440		99.41
KOG1539|consensus	910		99.41
KOG1445|consensus	1012		99.41
KOG0973|consensus	942		99.41
KOG1034|consensus	385		99.4
KOG0289|consensus	506		99.39
KOG0270|consensus	463		99.39
KOG0267|consensus	825		99.39
KOG0640|consensus	430		99.39
KOG1446|consensus	311		99.39
KOG0772|consensus	641		99.38
KOG0318|consensus	603		99.38
KOG1009|consensus	434		99.38
KOG0293|consensus	519		99.37
KOG0269|consensus	839		99.35
KOG0293|consensus	519		99.35
KOG0305|consensus	484		99.33
KOG0290|consensus	364		99.33
KOG4283|consensus	397		99.33
KOG4283|consensus	397		99.32
KOG0646|consensus	476		99.3
KOG0267|consensus	825		99.3
KOG0278|consensus	334		99.29
KOG0306|consensus	888		99.28
KOG0313|consensus	423		99.27
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.27
KOG1036|consensus	323		99.25
KOG1007|consensus	370		99.24
KOG0288|consensus	459		99.24
KOG0643|consensus	327		99.23
KOG0301|consensus	745		99.23
KOG0310|consensus	487		99.22
KOG2111|consensus	346		99.22
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.22
KOG4328|consensus	498		99.19
KOG3914|consensus	390		99.17
KOG0771|consensus	398		99.16
KOG1445|consensus	1012		99.16
KOG0308|consensus	735		99.15
KOG1274|consensus	933		99.15
KOG0321|consensus	720		99.15
KOG0646|consensus	476		99.14
KOG1007|consensus	370		99.14
KOG1446|consensus	311		99.14
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.14
KOG1539|consensus	910		99.14
KOG1538|consensus	1081		99.13
KOG0772|consensus	641		99.13
KOG0301|consensus	745		99.13
KOG0322|consensus	323		99.13
KOG0300|consensus	481		99.13
KOG2110|consensus	391		99.1
KOG0288|consensus	459		99.1
KOG0641|consensus	350		99.09
KOG1332|consensus	299		99.09
KOG1272|consensus	545		99.08
KOG0300|consensus	481		99.08
KOG1310|consensus	758		99.08
KOG2110|consensus	391		99.07
KOG0644|consensus	1113		99.06
KOG0290|consensus	364		99.05
KOG2394|consensus	636		99.05
KOG0299|consensus	479		99.04
KOG2445|consensus	361		99.02
KOG0268|consensus	433		99.02
KOG0321|consensus	720		99.01
KOG0642|consensus	577		99.0
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	98.99
KOG1332|consensus	299		98.98
KOG0268|consensus	433		98.98
KOG4378|consensus	673		98.97
KOG1063|consensus	764		98.97
KOG2919|consensus	406		98.96
KOG0639|consensus	705		98.94
KOG1408|consensus	1080		98.94
KOG4328|consensus	498		98.93
KOG2096|consensus	420		98.93
KOG1274|consensus	933		98.92
KOG0307|consensus	1049		98.91
KOG0307|consensus	1049		98.91
KOG1009|consensus	434		98.91
COG2319	466	FOG: WD40 repeat [General function prediction only	98.9
KOG0642|consensus	577		98.89
KOG2445|consensus	361		98.89
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.89
KOG1188|consensus	376		98.88
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	98.88
KOG1408|consensus	1080		98.87
KOG2048|consensus	691		98.85
KOG1188|consensus	376		98.85
KOG1524|consensus	737		98.83
KOG1063|consensus	764		98.83
KOG4227|consensus	609		98.83
KOG2919|consensus	406		98.82
KOG4714|consensus	319		98.82
KOG1273|consensus	405		98.82
KOG4378|consensus	673		98.8
KOG2055|consensus	514		98.8
KOG4547|consensus	541		98.8
KOG0270|consensus	463		98.77
KOG0650|consensus	733		98.76
KOG1036|consensus	323		98.75
KOG3881|consensus	412		98.75
KOG0280|consensus	339		98.72
KOG2048|consensus	691		98.69
KOG1963|consensus	792		98.69
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.69
KOG0974|consensus	967		98.68
KOG2139|consensus	445		98.68
KOG2695|consensus	425		98.67
KOG1587|consensus	555		98.66
KOG0649|consensus	325		98.65
KOG2096|consensus	420		98.64
KOG2106|consensus	626		98.61
KOG1310|consensus	758		98.61
KOG1587|consensus	555		98.6
KOG0644|consensus	1113		98.57
KOG1963|consensus	792		98.57
KOG2055|consensus	514		98.57
KOG2111|consensus	346		98.56
KOG1523|consensus	361		98.55
COG2319	466	FOG: WD40 repeat [General function prediction only	98.55
KOG4227|consensus	609		98.51
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.51
KOG0771|consensus	398		98.49
KOG2321|consensus	703		98.49
KOG2139|consensus	445		98.46
KOG0650|consensus	733		98.44
KOG1409|consensus	404		98.42
KOG0974|consensus	967		98.36
KOG1272|consensus	545		98.34
KOG1523|consensus	361		98.33
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.33
KOG2106|consensus	626		98.32
KOG1240|consensus	1431		98.3
KOG1538|consensus	1081		98.23
KOG2695|consensus	425		98.21
KOG0322|consensus	323		98.2
KOG1334|consensus	559		98.13
KOG1524|consensus	737		98.13
KOG2315|consensus	566		98.11
KOG1064|consensus	2439		98.09
KOG0280|consensus	339		98.09
PRK01742	429	tolB translocation protein TolB; Provisional	98.06
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.05
KOG4640|consensus	665		98.04
PRK05137	435	tolB translocation protein TolB; Provisional	98.04
KOG1645|consensus	463		98.04
KOG3881|consensus	412		98.04
KOG4497|consensus	447		98.0
KOG2315|consensus	566		97.99
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	97.97
KOG1517|consensus	1387		97.97
PRK11028	330	6-phosphogluconolactonase; Provisional	97.97
PRK01742	429	tolB translocation protein TolB; Provisional	97.95
KOG1064|consensus	2439		97.94
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.94
KOG2041|consensus	1189		97.9
KOG1275|consensus	1118		97.87
KOG4190|consensus	1034		97.86
KOG1240|consensus	1431		97.79
KOG1517|consensus	1387		97.78
KOG1912|consensus	1062		97.77
KOG4547|consensus	541		97.76
KOG4532|consensus	344		97.71
PRK02889	427	tolB translocation protein TolB; Provisional	97.7
PRK11028	330	6-phosphogluconolactonase; Provisional	97.69
PRK05137	435	tolB translocation protein TolB; Provisional	97.67
PRK03629	429	tolB translocation protein TolB; Provisional	97.66
PRK04922	433	tolB translocation protein TolB; Provisional	97.65
PRK00178	430	tolB translocation protein TolB; Provisional	97.65
KOG1409|consensus	404		97.65
PRK03629	429	tolB translocation protein TolB; Provisional	97.65
PRK02889	427	tolB translocation protein TolB; Provisional	97.59
KOG0882|consensus	558		97.55
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	97.53
PRK04922	433	tolB translocation protein TolB; Provisional	97.5
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	97.49
PRK01029	428	tolB translocation protein TolB; Provisional	97.4
KOG2079|consensus	1206		97.38
COG4946	668	Uncharacterized protein related to the periplasmic	97.35
KOG0309|consensus	1081		97.33
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	97.3
PRK01029	428	tolB translocation protein TolB; Provisional	97.29
KOG4532|consensus	344		97.29
KOG1912|consensus	1062		97.28
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.28
PRK04792	448	tolB translocation protein TolB; Provisional	97.27
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	97.23
KOG2321|consensus	703		97.22
KOG3617|consensus	1416		97.21
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	97.17
PRK00178	430	tolB translocation protein TolB; Provisional	97.16
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.15
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	97.11
PRK04792	448	tolB translocation protein TolB; Provisional	97.11
KOG4190|consensus	1034		97.07
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	97.05
KOG1832|consensus	1516		97.04
KOG2079|consensus	1206		97.01
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.9
KOG4497|consensus	447		96.88
KOG1334|consensus	559		96.85
KOG4714|consensus	319		96.81
KOG1354|consensus	433		96.8
KOG2314|consensus	698		96.8
PRK02888	635	nitrous-oxide reductase; Validated	96.73
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	96.67
KOG0309|consensus	1081		96.67
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	96.62
KOG0882|consensus	558		96.58
KOG2041|consensus	1189		96.58
KOG3621|consensus	726		96.57
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	96.38
KOG4640|consensus	665		96.33
KOG1354|consensus	433		96.32
KOG4649|consensus	354		96.27
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	95.94
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	95.87
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.85
KOG3914|consensus	390		95.81
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	95.76
COG4946	668	Uncharacterized protein related to the periplasmic	95.69
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	95.63
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	95.51
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	95.47
KOG2444|consensus	238		95.29
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	95.21
KOG2314|consensus	698		94.86
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	94.78
PRK04043	419	tolB translocation protein TolB; Provisional	94.58
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	94.53
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	94.32
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	94.22
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	94.21
PRK04043	419	tolB translocation protein TolB; Provisional	94.21
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	94.08
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	94.08
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	93.85
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	93.66
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	93.56
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	93.29
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	93.19
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	93.16
KOG1832|consensus	1516		93.16
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	93.12
KOG1645|consensus	463		92.86
KOG2066|consensus	846		92.69
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	92.05
KOG1275|consensus	1118		91.97
KOG2066|consensus	846		91.92
KOG2444|consensus	238		91.76
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	91.63
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	91.55
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	91.43
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	91.04
KOG2114|consensus	933		90.69
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	90.5
KOG3621|consensus	726		89.7
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	89.65
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	89.19
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	88.94
KOG2395|consensus	644		88.92
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	88.61
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	88.52
KOG4499|consensus	310		87.93
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	87.37
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	86.98
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	86.97
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	86.14
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	85.74
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	85.3
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	85.01
PF12768	281	Rax2: Cortical protein marker for cell polarity	83.89
PRK02888	635	nitrous-oxide reductase; Validated	83.87
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	83.31
KOG1008|consensus	783		83.16
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	82.34
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	82.34
KOG1008|consensus	783		82.02
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	81.95
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	81.43
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	80.8
KOG1920|consensus	1265		80.24
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	80.2

>KOG0272|consensus

Probab=99.83  E-value=3.6e-20  Score=106.95  Aligned_cols=85  Identities=33%  Similarity=0.493  Sum_probs=80.0

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      |...|.+++|+|+    ++.++++|. |..-++||++++.++-.+.+|..+|..+ |+|.|..++||+.|.++++||++.
T Consensus       302 Hs~~v~~iaf~~D----GSL~~tGGl-D~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~  376 (459)
T KOG0272|consen  302 HSKGVFSIAFQPD----GSLAATGGL-DSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRM  376 (459)
T ss_pred             cccccceeEecCC----CceeeccCc-cchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecc
Confidence            7789999999999    788888885 9999999999999999999999999999 999999999999999999999999


Q ss_pred             CceeeEecCcc
Q psy14456         81 RGCTNVLTPIT   91 (93)
Q Consensus        81 ~~~~~~~~~~~   91 (93)
                      ..++..+.+|.
T Consensus       377 r~~ly~ipAH~  387 (459)
T KOG0272|consen  377 RSELYTIPAHS  387 (459)
T ss_pred             cccceeccccc
Confidence            99998888874

>KOG0271|consensus

Probab=99.82  E-value=8.4e-20  Score=104.86  Aligned_cols=85  Identities=29%  Similarity=0.458  Sum_probs=76.9

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      |.++|.|+.|+|+    +..+++++ .|.++++||+.+..+.+++++|.+.|.|+ |+|++..+++|+.|+.|++||.++
T Consensus       114 H~e~Vl~~~fsp~----g~~l~tGs-GD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpkt  188 (480)
T KOG0271|consen  114 HGEAVLSVQFSPT----GSRLVTGS-GDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKT  188 (480)
T ss_pred             CCCcEEEEEecCC----CceEEecC-CCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCC
Confidence            7899999999998    77777765 69999999999999999999999999999 999999999999999999999998


Q ss_pred             Cce-eeEecCcc
Q psy14456         81 RGC-TNVLTPIT   91 (93)
Q Consensus        81 ~~~-~~~~~~~~   91 (93)
                      |++ .+.+.+|.
T Consensus       189 g~~~g~~l~gH~  200 (480)
T KOG0271|consen  189 GQQIGRALRGHK  200 (480)
T ss_pred             CCcccccccCcc
Confidence            865 56666664

>KOG0263|consensus

Probab=99.80  E-value=1.9e-19  Score=109.55  Aligned_cols=85  Identities=28%  Similarity=0.469  Sum_probs=77.7

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      |.+-|.|+.|+|+    ..++++++ .|.++++||+.+|..+..|.||+++|.++ |+|.|.++++|+.|+.|++||+.+
T Consensus       534 hlsDV~cv~FHPN----s~Y~aTGS-sD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~  608 (707)
T KOG0263|consen  534 HLSDVDCVSFHPN----SNYVATGS-SDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLAN  608 (707)
T ss_pred             cccccceEEECCc----ccccccCC-CCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCC
Confidence            6678999999998    67777765 59999999999999999999999999999 999999999999999999999999


Q ss_pred             CceeeEecCcc
Q psy14456         81 RGCTNVLTPIT   91 (93)
Q Consensus        81 ~~~~~~~~~~~   91 (93)
                      +..+..+.+|+
T Consensus       609 ~~~v~~l~~Ht  619 (707)
T KOG0263|consen  609 GSLVKQLKGHT  619 (707)
T ss_pred             Ccchhhhhccc
Confidence            98888877763

>KOG0295|consensus

Probab=99.80  E-value=1.7e-18  Score=98.78  Aligned_cols=90  Identities=28%  Similarity=0.526  Sum_probs=79.0

Q ss_pred             CccceeEEEEEecCCC----------CcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCC
Q psy14456          2 HDGTVRDVCFIEDTSN----------KSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHD   70 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~----------~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~   70 (93)
                      |+-+|.|++|.|....          .+-.++.++++|++|++||+.++.++.++.+|.+.|..+ |+|.|++++++..|
T Consensus       276 hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDD  355 (406)
T KOG0295|consen  276 HEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADD  355 (406)
T ss_pred             cccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecC
Confidence            7788999999986421          112456667899999999999999999999999999999 99999999999999


Q ss_pred             CcEEEEeCCCCceeeEecCcc
Q psy14456         71 RTVRFWDLRTRGCTNVLTPIT   91 (93)
Q Consensus        71 ~~i~~~d~~~~~~~~~~~~~~   91 (93)
                      +++++||+++++|...+.+|+
T Consensus       356 ktlrvwdl~~~~cmk~~~ah~  376 (406)
T KOG0295|consen  356 KTLRVWDLKNLQCMKTLEAHE  376 (406)
T ss_pred             CcEEEEEeccceeeeccCCCc
Confidence            999999999999999888764

>KOG0266|consensus

Probab=99.78  E-value=7.2e-18  Score=101.07  Aligned_cols=86  Identities=38%  Similarity=0.599  Sum_probs=78.1

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeC-CCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDC-ATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLR   79 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~   79 (93)
                      |...|.+++|+|+    ++.+++++ .|+++++||+ ..+..++.+.+|...++++ |+++++.+++|+.|+++++||++
T Consensus       202 h~~~v~~~~fs~d----~~~l~s~s-~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~  276 (456)
T KOG0266|consen  202 HTRGVSDVAFSPD----GSYLLSGS-DDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVR  276 (456)
T ss_pred             cccceeeeEECCC----CcEEEEec-CCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEecc
Confidence            7788999999999    67777766 6999999999 5558889999999999999 99999999999999999999999


Q ss_pred             CCceeeEecCccC
Q psy14456         80 TRGCTNVLTPITV   92 (93)
Q Consensus        80 ~~~~~~~~~~~~~   92 (93)
                      ++++.+.+..|..
T Consensus       277 ~~~~~~~l~~hs~  289 (456)
T KOG0266|consen  277 TGECVRKLKGHSD  289 (456)
T ss_pred             CCeEEEeeeccCC
Confidence            9999999988864

>PTZ00421 coronin; Provisional

Probab=99.77  E-value=3.1e-17  Score=98.94  Aligned_cols=86  Identities=26%  Similarity=0.373  Sum_probs=75.7

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      |+..|.+++|+|.+   ...+++++ .|+.|++||++++..+..+.+|...+.++ |++++.++++++.|+.+++||+++
T Consensus       124 H~~~V~~l~f~P~~---~~iLaSgs-~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rs  199 (493)
T PTZ00421        124 HTKKVGIVSFHPSA---MNVLASAG-ADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRD  199 (493)
T ss_pred             CCCcEEEEEeCcCC---CCEEEEEe-CCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCC
Confidence            78899999999973   35666666 69999999999999888899999999999 999999999999999999999999


Q ss_pred             CceeeEecCcc
Q psy14456         81 RGCTNVLTPIT   91 (93)
Q Consensus        81 ~~~~~~~~~~~   91 (93)
                      +..+..+..|.
T Consensus       200 g~~v~tl~~H~  210 (493)
T PTZ00421        200 GTIVSSVEAHA  210 (493)
T ss_pred             CcEEEEEecCC
Confidence            98887776553

>KOG0266|consensus

Probab=99.76  E-value=3.1e-17  Score=98.39  Aligned_cols=84  Identities=36%  Similarity=0.608  Sum_probs=75.1

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      |+..|++++|+|.    ++++++++ .|+.|++||++++.+...+.+|...+.++ |++++.++++++.|+.+++||+.+
T Consensus       245 H~~~v~~~~f~p~----g~~i~Sgs-~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~  319 (456)
T KOG0266|consen  245 HSTYVTSVAFSPD----GNLLVSGS-DDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLET  319 (456)
T ss_pred             CCCceEEEEecCC----CCEEEEec-CCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCC
Confidence            8899999999999    76666655 69999999999999999999999999999 999999999999999999999999


Q ss_pred             Cc--eeeEecCc
Q psy14456         81 RG--CTNVLTPI   90 (93)
Q Consensus        81 ~~--~~~~~~~~   90 (93)
                      +.  +...+..+
T Consensus       320 ~~~~~~~~~~~~  331 (456)
T KOG0266|consen  320 GSKLCLKLLSGA  331 (456)
T ss_pred             CceeeeecccCC
Confidence            98  55555544

>KOG0279|consensus

Probab=99.75  E-value=1.9e-17  Score=91.86  Aligned_cols=85  Identities=26%  Similarity=0.280  Sum_probs=74.2

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      |++.|.|+.|+|..   .+.++.+++.|+++++||++.-+....+.+|++.++.+ ++|||.++++|+.|+.+.+||++.
T Consensus       147 ~~~WVscvrfsP~~---~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~  223 (315)
T KOG0279|consen  147 HREWVSCVRFSPNE---SNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNE  223 (315)
T ss_pred             CcCcEEEEEEcCCC---CCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccC
Confidence            46789999999985   34444444579999999999999899999999999999 999999999999999999999999


Q ss_pred             CceeeEecC
Q psy14456         81 RGCTNVLTP   89 (93)
Q Consensus        81 ~~~~~~~~~   89 (93)
                      +++++.+..
T Consensus       224 ~k~lysl~a  232 (315)
T KOG0279|consen  224 GKNLYSLEA  232 (315)
T ss_pred             CceeEeccC
Confidence            998887754

>KOG0271|consensus

Probab=99.75  E-value=1e-17  Score=96.44  Aligned_cols=87  Identities=31%  Similarity=0.429  Sum_probs=77.4

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCcee-EEeeccccceEEE-Eec-----CCCEEEEecCCCcEE
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAF-QALSGHSGHVLSL-YNW-----GGATVLSGSHDRTVR   74 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~-~~~~~~~~~v~~~-~~~-----~~~~~~s~~~~~~i~   74 (93)
                      |...|.|++|+|+    ++.+++++ .||.|++||..+++++ ..+.+|+..|+++ |.|     ....+++++.|+.++
T Consensus       156 H~~WVlcvawsPD----gk~iASG~-~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vr  230 (480)
T KOG0271|consen  156 HKNWVLCVAWSPD----GKKIASGS-KDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVR  230 (480)
T ss_pred             CccEEEEEEECCC----cchhhccc-cCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEE
Confidence            7789999999999    78877765 7999999999999775 5788999999999 877     256899999999999


Q ss_pred             EEeCCCCceeeEecCccCC
Q psy14456         75 FWDLRTRGCTNVLTPITVP   93 (93)
Q Consensus        75 ~~d~~~~~~~~~~~~~~~~   93 (93)
                      +||+..+.+++.+.+|+.|
T Consensus       231 IWd~~~~~~~~~lsgHT~~  249 (480)
T KOG0271|consen  231 IWDTKLGTCVRTLSGHTAS  249 (480)
T ss_pred             EEEccCceEEEEeccCccc
Confidence            9999999999999999865

>KOG0286|consensus

Probab=99.75  E-value=2.3e-17  Score=92.19  Aligned_cols=84  Identities=29%  Similarity=0.466  Sum_probs=77.7

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      |++-|.+++++|..   .+.++++++ |+..++||++.+.+++.|.+|.+.|+.+ |.|+|.-+++|+.|++.++||+|.
T Consensus       185 H~gDV~slsl~p~~---~ntFvSg~c-D~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRa  260 (343)
T KOG0286|consen  185 HTGDVMSLSLSPSD---GNTFVSGGC-DKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRA  260 (343)
T ss_pred             CcccEEEEecCCCC---CCeEEeccc-ccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecC
Confidence            78999999999942   788898885 9999999999999999999999999999 999999999999999999999999


Q ss_pred             CceeeEecC
Q psy14456         81 RGCTNVLTP   89 (93)
Q Consensus        81 ~~~~~~~~~   89 (93)
                      .+.+..|..
T Consensus       261 D~~~a~ys~  269 (343)
T KOG0286|consen  261 DQELAVYSH  269 (343)
T ss_pred             CcEEeeecc
Confidence            988887753

>KOG0286|consensus

Probab=99.73  E-value=7.5e-17  Score=90.18  Aligned_cols=85  Identities=32%  Similarity=0.620  Sum_probs=77.2

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-Eec-CCCEEEEecCCCcEEEEeCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNW-GGATVLSGSHDRTVRFWDLR   79 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~-~~~~~~s~~~~~~i~~~d~~   79 (93)
                      |++.+.|+.|.++    ++. +++. .|.+..+||+++++....+.+|.+.|.++ ++| +++.+++|+.|+..++||+|
T Consensus       144 HtgylScC~f~dD----~~i-lT~S-GD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R  217 (343)
T KOG0286|consen  144 HTGYLSCCRFLDD----NHI-LTGS-GDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVR  217 (343)
T ss_pred             ccceeEEEEEcCC----Cce-EecC-CCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeecc
Confidence            8899999999987    554 4433 49999999999999999999999999999 999 89999999999999999999


Q ss_pred             CCceeeEecCccC
Q psy14456         80 TRGCTNVLTPITV   92 (93)
Q Consensus        80 ~~~~~~~~~~~~~   92 (93)
                      .+.+.++|.+|+.
T Consensus       218 ~~~c~qtF~ghes  230 (343)
T KOG0286|consen  218 SGQCVQTFEGHES  230 (343)
T ss_pred             CcceeEeeccccc
Confidence            9999999999863

>KOG0285|consensus

Probab=99.73  E-value=7.3e-17  Score=92.44  Aligned_cols=84  Identities=36%  Similarity=0.468  Sum_probs=75.7

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      |-+.|+|++.+|.    -+.++++| +|..+++||+++...+..+.+|.++|..+ +.+-...+++|++|++|++||++.
T Consensus       234 HlS~V~~L~lhPT----ldvl~t~g-rDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~a  308 (460)
T KOG0285|consen  234 HLSGVYCLDLHPT----LDVLVTGG-RDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRA  308 (460)
T ss_pred             ccceeEEEecccc----ceeEEecC-CcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeecc
Confidence            6688999999998    78888887 79999999999999999999999999999 888667799999999999999999


Q ss_pred             CceeeEecCc
Q psy14456         81 RGCTNVLTPI   90 (93)
Q Consensus        81 ~~~~~~~~~~   90 (93)
                      |+....+..|
T Consensus       309 gkt~~tlt~h  318 (460)
T KOG0285|consen  309 GKTMITLTHH  318 (460)
T ss_pred             CceeEeeecc
Confidence            9877777655

>KOG0272|consensus

Probab=99.72  E-value=2.9e-17  Score=95.14  Aligned_cols=85  Identities=25%  Similarity=0.308  Sum_probs=78.0

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-Eec-CCCEEEEecCCCcEEEEeCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNW-GGATVLSGSHDRTVRFWDLR   79 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~-~~~~~~s~~~~~~i~~~d~~   79 (93)
                      |...|..++|+|+    +-.+++++ .|++++|||++..+++..+.+|.+.|..+ |.| .|.+++|++.|.++++|..+
T Consensus       344 H~k~I~~V~fsPN----Gy~lATgs-~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~  418 (459)
T KOG0272|consen  344 HIKEILSVAFSPN----GYHLATGS-SDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTR  418 (459)
T ss_pred             cccceeeEeECCC----ceEEeecC-CCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCC
Confidence            7889999999998    66667766 69999999999999999999999999999 998 78999999999999999999


Q ss_pred             CCceeeEecCcc
Q psy14456         80 TRGCTNVLTPIT   91 (93)
Q Consensus        80 ~~~~~~~~~~~~   91 (93)
                      +.++++++.+|+
T Consensus       419 ~~~~~ksLaGHe  430 (459)
T KOG0272|consen  419 TWSPLKSLAGHE  430 (459)
T ss_pred             CcccchhhcCCc
Confidence            999999998875

>PTZ00421 coronin; Provisional

Probab=99.71  E-value=6.2e-16  Score=93.40  Aligned_cols=86  Identities=20%  Similarity=0.286  Sum_probs=72.2

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCC-------ceeEEeeccccceEEE-EecCC-CEEEEecCCCc
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATG-------QAFQALSGHSGHVLSL-YNWGG-ATVLSGSHDRT   72 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~-------~~~~~~~~~~~~v~~~-~~~~~-~~~~s~~~~~~   72 (93)
                      |++.|.+++|+|..   ++.+++++ .|+.|++|++.++       ..+..+.+|...|.++ |+|.+ ..+++++.|+.
T Consensus        74 H~~~V~~v~fsP~d---~~~LaSgS-~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt  149 (493)
T PTZ00421         74 QEGPIIDVAFNPFD---PQKLFTAS-EDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV  149 (493)
T ss_pred             CCCCEEEEEEcCCC---CCEEEEEe-CCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence            78999999999931   56677766 6999999998764       3466788999999999 99964 78999999999


Q ss_pred             EEEEeCCCCceeeEecCcc
Q psy14456         73 VRFWDLRTRGCTNVLTPIT   91 (93)
Q Consensus        73 i~~~d~~~~~~~~~~~~~~   91 (93)
                      +++||++++.....+..|.
T Consensus       150 VrIWDl~tg~~~~~l~~h~  168 (493)
T PTZ00421        150 VNVWDVERGKAVEVIKCHS  168 (493)
T ss_pred             EEEEECCCCeEEEEEcCCC
Confidence            9999999998888877654

>KOG0284|consensus

Probab=99.71  E-value=1.1e-17  Score=96.72  Aligned_cols=85  Identities=27%  Similarity=0.402  Sum_probs=76.4

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      |.--|.+++|+|.    ..+++++| +|..|++||.++++++.++.+|++.|..+ |.+++++|++++.|..++++|+++
T Consensus       221 HgwdVksvdWHP~----kgLiasgs-kDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~  295 (464)
T KOG0284|consen  221 HGWDVKSVDWHPT----KGLIASGS-KDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRT  295 (464)
T ss_pred             CCCCcceeccCCc----cceeEEcc-CCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhH
Confidence            5567999999997    66666655 79999999999999999999999999999 999999999999999999999998


Q ss_pred             CceeeEecCcc
Q psy14456         81 RGCTNVLTPIT   91 (93)
Q Consensus        81 ~~~~~~~~~~~   91 (93)
                      -+.++.+++|.
T Consensus       296 mkEl~~~r~Hk  306 (464)
T KOG0284|consen  296 MKELFTYRGHK  306 (464)
T ss_pred             hHHHHHhhcch
Confidence            88888888764

>PTZ00420 coronin; Provisional

Probab=99.71  E-value=6.9e-16  Score=94.20  Aligned_cols=85  Identities=11%  Similarity=0.110  Sum_probs=71.9

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      |+..|.+++|+|+    +..++++++.|+.|++||+++++.+..+. +...+.++ |++++.++++++.|+.+++||+++
T Consensus       124 H~~~V~sVaf~P~----g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rs  198 (568)
T PTZ00420        124 HKKKISIIDWNPM----NYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRK  198 (568)
T ss_pred             CCCcEEEEEECCC----CCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCC
Confidence            7789999999998    55554444469999999999988777665 56788999 999999999999999999999999


Q ss_pred             CceeeEecCcc
Q psy14456         81 RGCTNVLTPIT   91 (93)
Q Consensus        81 ~~~~~~~~~~~   91 (93)
                      +..+..+..|.
T Consensus       199 g~~i~tl~gH~  209 (568)
T PTZ00420        199 QEIASSFHIHD  209 (568)
T ss_pred             CcEEEEEeccc
Confidence            98888887664

>KOG0316|consensus

Probab=99.70  E-value=1.8e-16  Score=86.73  Aligned_cols=85  Identities=22%  Similarity=0.343  Sum_probs=80.3

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      |+++|..+.|..+    +++.+++|+ |.++++|+...+.++++..+|..+|... .+.++..+++|+.|+.+.+||+.+
T Consensus        16 ~qgaV~avryN~d----GnY~ltcGs-drtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~T   90 (307)
T KOG0316|consen   16 AQGAVRAVRYNVD----GNYCLTCGS-DRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNT   90 (307)
T ss_pred             cccceEEEEEccC----CCEEEEcCC-CceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEccc
Confidence            5789999999998    899999996 9999999999999999999999999999 888999999999999999999999


Q ss_pred             CceeeEecCcc
Q psy14456         81 RGCTNVLTPIT   91 (93)
Q Consensus        81 ~~~~~~~~~~~   91 (93)
                      |+..+.|++|.
T Consensus        91 Gkv~Rr~rgH~  101 (307)
T KOG0316|consen   91 GKVDRRFRGHL  101 (307)
T ss_pred             Ceeeeeccccc
Confidence            99999999884

>KOG0319|consensus

Probab=99.70  E-value=1.5e-16  Score=97.15  Aligned_cols=87  Identities=24%  Similarity=0.379  Sum_probs=78.9

Q ss_pred             CCccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCC
Q psy14456          1 MHDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLR   79 (93)
Q Consensus         1 ~h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~   79 (93)
                      .|...|+|++++|+    .++ ++.|++|.+.++|+++....+..+.+|+-.+.++ |++..+.++|++.|.++++|.+.
T Consensus       461 aHdKdIN~Vaia~n----dkL-iAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is  535 (775)
T KOG0319|consen  461 AHDKDINCVAIAPN----DKL-IATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSIS  535 (775)
T ss_pred             hhcccccceEecCC----Cce-EEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEec
Confidence            37889999999997    455 4455689999999999888899999999999999 99999999999999999999999


Q ss_pred             CCceeeEecCccC
Q psy14456         80 TRGCTNVLTPITV   92 (93)
Q Consensus        80 ~~~~~~~~~~~~~   92 (93)
                      +..|+++|.+|+.
T Consensus       536 ~fSClkT~eGH~~  548 (775)
T KOG0319|consen  536 TFSCLKTFEGHTS  548 (775)
T ss_pred             cceeeeeecCccc
Confidence            9999999999864

>KOG0285|consensus

Probab=99.70  E-value=8.8e-17  Score=92.10  Aligned_cols=85  Identities=27%  Similarity=0.322  Sum_probs=78.0

Q ss_pred             CCccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCC
Q psy14456          1 MHDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLR   79 (93)
Q Consensus         1 ~h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~   79 (93)
                      .|.+.|.|+++.|.    +.++++++ .|+++.|||+.+++...++.+|.+.+..+ ++....++++++.|+++++||++
T Consensus       149 gHlgWVr~vavdP~----n~wf~tgs-~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe  223 (460)
T KOG0285|consen  149 GHLGWVRSVAVDPG----NEWFATGS-ADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLE  223 (460)
T ss_pred             hccceEEEEeeCCC----ceeEEecC-CCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEech
Confidence            38899999999997    67777766 69999999999999999999999999999 99999999999999999999999


Q ss_pred             CCceeeEecCc
Q psy14456         80 TRGCTNVLTPI   90 (93)
Q Consensus        80 ~~~~~~~~~~~   90 (93)
                      ..+.++.+.+|
T Consensus       224 ~nkvIR~YhGH  234 (460)
T KOG0285|consen  224 YNKVIRHYHGH  234 (460)
T ss_pred             hhhhHHHhccc
Confidence            99888888776

>KOG0291|consensus

Probab=99.70  E-value=4.1e-16  Score=95.78  Aligned_cols=83  Identities=28%  Similarity=0.484  Sum_probs=77.7

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      |..++++++++|+    ++.+++++ +|+.|++||..++-|..++..|++.+..+ |...++.+++.+.||+++.||+..
T Consensus       349 H~~~i~~l~YSpD----gq~iaTG~-eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkR  423 (893)
T KOG0291|consen  349 HSDRITSLAYSPD----GQLIATGA-EDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKR  423 (893)
T ss_pred             cccceeeEEECCC----CcEEEecc-CCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecc
Confidence            6788999999999    88888877 69999999999999999999999999999 999999999999999999999999


Q ss_pred             CceeeEecC
Q psy14456         81 RGCTNVLTP   89 (93)
Q Consensus        81 ~~~~~~~~~   89 (93)
                      ..+.++|..
T Consensus       424 YrNfRTft~  432 (893)
T KOG0291|consen  424 YRNFRTFTS  432 (893)
T ss_pred             cceeeeecC
Confidence            988888864

>KOG0319|consensus

Probab=99.69  E-value=2e-16  Score=96.60  Aligned_cols=85  Identities=24%  Similarity=0.457  Sum_probs=78.6

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      |+..|.|+.|+|.    .+.++++. .|++|++|.+.+.+|++++.||+..|... |-.++..+++++.||.+++|++.+
T Consensus       504 H~RGvw~V~Fs~~----dq~laT~S-gD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt  578 (775)
T KOG0319|consen  504 HTRGVWCVSFSKN----DQLLATCS-GDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKT  578 (775)
T ss_pred             CccceEEEEeccc----cceeEecc-CCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccc
Confidence            8889999999997    67777765 59999999999999999999999999988 998999999999999999999999


Q ss_pred             CceeeEecCcc
Q psy14456         81 RGCTNVLTPIT   91 (93)
Q Consensus        81 ~~~~~~~~~~~   91 (93)
                      +.|.+++..|+
T Consensus       579 ~eC~~tlD~H~  589 (775)
T KOG0319|consen  579 NECEMTLDAHN  589 (775)
T ss_pred             hhhhhhhhhcc
Confidence            99999998875

>KOG0263|consensus

Probab=99.69  E-value=1.3e-16  Score=97.46  Aligned_cols=87  Identities=25%  Similarity=0.383  Sum_probs=80.6

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      |..+|.++.|+|-    +-++++++ .|++-++|..+...++..+.+|-+.+.|+ |+|+..++++|+.|+++++||+.+
T Consensus       492 H~~PVwdV~F~P~----GyYFatas-~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~  566 (707)
T KOG0263|consen  492 HLAPVWDVQFAPR----GYYFATAS-HDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVST  566 (707)
T ss_pred             CCcceeeEEecCC----ceEEEecC-CCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCC
Confidence            7789999999997    67777765 79999999999999999999999999999 999999999999999999999999


Q ss_pred             CceeeEecCccCC
Q psy14456         81 RGCTNVLTPITVP   93 (93)
Q Consensus        81 ~~~~~~~~~~~~~   93 (93)
                      |...+.|.+|..|
T Consensus       567 G~~VRiF~GH~~~  579 (707)
T KOG0263|consen  567 GNSVRIFTGHKGP  579 (707)
T ss_pred             CcEEEEecCCCCc
Confidence            9999999999764

>KOG0302|consensus

Probab=99.69  E-value=1.7e-16  Score=91.22  Aligned_cols=87  Identities=24%  Similarity=0.372  Sum_probs=70.6

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCC---ceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEe
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATG---QAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWD   77 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~---~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d   77 (93)
                      |+..|..++|+|.+   ...|++++ .|++|+|||++.+   .++.. +.|.+.|+.+ |+-...+|++|+.||.+.+||
T Consensus       256 H~~SVEDLqWSptE---~~vfaScS-~DgsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwD  330 (440)
T KOG0302|consen  256 HTKSVEDLQWSPTE---DGVFASCS-CDGSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWD  330 (440)
T ss_pred             cccchhhhccCCcc---CceEEeee-cCceEEEEEecCCCccceeEe-eccCCceeeEEccCCcceeeecCCCceEEEEE
Confidence            88999999999984   44555555 6999999999987   33443 7899999999 998777999999999999999


Q ss_pred             CCC---CceeeEecCccCC
Q psy14456         78 LRT---RGCTNVLTPITVP   93 (93)
Q Consensus        78 ~~~---~~~~~~~~~~~~~   93 (93)
                      +|+   ++++..|..|..|
T Consensus       331 LR~~~~~~pVA~fk~Hk~p  349 (440)
T KOG0302|consen  331 LRQFKSGQPVATFKYHKAP  349 (440)
T ss_pred             hhhccCCCcceeEEeccCC
Confidence            995   4567777766654

>KOG0284|consensus

Probab=99.68  E-value=5.6e-17  Score=93.80  Aligned_cols=85  Identities=27%  Similarity=0.434  Sum_probs=76.2

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      |...|.+++|+|.    .++|+++. .|+.|+|||....+....+.+|...+.++ |+|...++++++.|..|++||.++
T Consensus       179 h~eaIRdlafSpn----DskF~t~S-dDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprS  253 (464)
T KOG0284|consen  179 HAEAIRDLAFSPN----DSKFLTCS-DDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRS  253 (464)
T ss_pred             hhhhhheeccCCC----CceeEEec-CCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCC
Confidence            4588999999997    67888876 69999999998887777789999999999 999999999999999999999999


Q ss_pred             CceeeEecCcc
Q psy14456         81 RGCTNVLTPIT   91 (93)
Q Consensus        81 ~~~~~~~~~~~   91 (93)
                      ++|+.++..|.
T Consensus       254 g~cl~tlh~HK  264 (464)
T KOG0284|consen  254 GSCLATLHGHK  264 (464)
T ss_pred             cchhhhhhhcc
Confidence            99988877663

>KOG0265|consensus

Probab=99.68  E-value=7.9e-16  Score=86.29  Aligned_cols=85  Identities=34%  Similarity=0.459  Sum_probs=76.0

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCC-ceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATG-QAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLR   79 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~-~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~   79 (93)
                      |++.|+.+.|+|+    +..++++|. |..|.+|+.... +....+++|.+.|..+ |..+++.+++++.|..+..||.+
T Consensus        46 h~geI~~~~F~P~----gs~~aSgG~-Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~  120 (338)
T KOG0265|consen   46 HKGEIYTIKFHPD----GSCFASGGS-DRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAE  120 (338)
T ss_pred             CcceEEEEEECCC----CCeEeecCC-cceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecc
Confidence            7899999999998    889999995 999999996433 3355778999999999 99999999999999999999999


Q ss_pred             CCceeeEecCcc
Q psy14456         80 TRGCTNVLTPIT   91 (93)
Q Consensus        80 ~~~~~~~~~~~~   91 (93)
                      +|++.+.+..|.
T Consensus       121 tG~~~rk~k~h~  132 (338)
T KOG0265|consen  121 TGKRIRKHKGHT  132 (338)
T ss_pred             cceeeehhcccc
Confidence            999999988774

>KOG0282|consensus

Probab=99.68  E-value=4.6e-17  Score=95.49  Aligned_cols=86  Identities=24%  Similarity=0.386  Sum_probs=78.0

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCC-CceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCAT-GQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLR   79 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~-~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~   79 (93)
                      |+..|+++.|.|..   +.+++++| .|+.|.+|++.. +.++.++.+|..+|..+ |+.++..+++++.|+.+++||.+
T Consensus       213 H~kgvsai~~fp~~---~hLlLS~g-mD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtE  288 (503)
T KOG0282|consen  213 HTKGVSAIQWFPKK---GHLLLSGG-MDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTE  288 (503)
T ss_pred             Cccccchhhhccce---eeEEEecC-CCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccc
Confidence            78899999999953   77888887 599999999876 78999999999999999 99999999999999999999999


Q ss_pred             CCceeeEecCcc
Q psy14456         80 TRGCTNVLTPIT   91 (93)
Q Consensus        80 ~~~~~~~~~~~~   91 (93)
                      +|+++..|....
T Consensus       289 TG~~~~~f~~~~  300 (503)
T KOG0282|consen  289 TGQVLSRFHLDK  300 (503)
T ss_pred             cceEEEEEecCC
Confidence            999999887643

>KOG0292|consensus

Probab=99.68  E-value=3.6e-16  Score=97.65  Aligned_cols=85  Identities=38%  Similarity=0.593  Sum_probs=80.4

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      |.++|..++|+|.    +.+++++| .|..|++|+....+++.++.+|-..|..+ |++.-.++++++.|.+|++|+.++
T Consensus        50 HdGpVRgv~FH~~----qplFVSGG-DDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqs  124 (1202)
T KOG0292|consen   50 HDGPVRGVDFHPT----QPLFVSGG-DDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQS  124 (1202)
T ss_pred             cCCccceeeecCC----CCeEEecC-CccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccC
Confidence            7899999999998    78888888 59999999999999999999999999999 999999999999999999999999


Q ss_pred             CceeeEecCcc
Q psy14456         81 RGCTNVLTPIT   91 (93)
Q Consensus        81 ~~~~~~~~~~~   91 (93)
                      +.++..+++|.
T Consensus       125 r~~iavltGHn  135 (1202)
T KOG0292|consen  125 RKCIAVLTGHN  135 (1202)
T ss_pred             CceEEEEecCc
Confidence            99999999874

>KOG0273|consensus

Probab=99.68  E-value=1.2e-15  Score=89.72  Aligned_cols=87  Identities=21%  Similarity=0.289  Sum_probs=76.8

Q ss_pred             CccceeEEEEEecCCC-----CcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEE
Q psy14456          2 HDGTVRDVCFIEDTSN-----KSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRF   75 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~-----~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~   75 (93)
                      |+..|+.+.|+|.+..     .+..+++++ .|++|++||+..+.+++.|..|..+|+++ |+|++.++++|+.|+.+++
T Consensus       400 Hskei~t~~wsp~g~v~~n~~~~~~l~sas-~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~i  478 (524)
T KOG0273|consen  400 HSKEIYTIKWSPTGPVTSNPNMNLMLASAS-FDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHI  478 (524)
T ss_pred             hccceeeEeecCCCCccCCCcCCceEEEee-cCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEe
Confidence            7889999999998522     345667776 59999999999999999999999999999 9999999999999999999


Q ss_pred             EeCCCCceeeEecC
Q psy14456         76 WDLRTRGCTNVLTP   89 (93)
Q Consensus        76 ~d~~~~~~~~~~~~   89 (93)
                      |+.++++..+.+..
T Consensus       479 ws~~~~~l~~s~~~  492 (524)
T KOG0273|consen  479 WSTKTGKLVKSYQG  492 (524)
T ss_pred             ccccchheeEeecC
Confidence            99999988777654

>KOG0318|consensus

Probab=99.67  E-value=1.5e-15  Score=90.29  Aligned_cols=83  Identities=29%  Similarity=0.496  Sum_probs=77.3

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEee---ccccceEEE-EecCCCEEEEecCCCcEEEEe
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALS---GHSGHVLSL-YNWGGATVLSGSHDRTVRFWD   77 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~---~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d   77 (93)
                      |..-|.|+.|+|+    ++++++.|+ |+.+.+||-.+++.+..+.   +|++.|..+ |+||+..++|++.|.++++||
T Consensus       189 HskFV~~VRysPD----G~~Fat~gs-Dgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWd  263 (603)
T KOG0318|consen  189 HSKFVNCVRYSPD----GSRFATAGS-DGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWD  263 (603)
T ss_pred             cccceeeEEECCC----CCeEEEecC-CccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEE
Confidence            7788999999999    899999996 9999999999999888886   899999999 999999999999999999999


Q ss_pred             CCCCceeeEecC
Q psy14456         78 LRTRGCTNVLTP   89 (93)
Q Consensus        78 ~~~~~~~~~~~~   89 (93)
                      +.+.++.+++..
T Consensus       264 Vs~~slv~t~~~  275 (603)
T KOG0318|consen  264 VSTNSLVSTWPM  275 (603)
T ss_pred             eeccceEEEeec
Confidence            999998888754

>KOG0315|consensus

Probab=99.67  E-value=1.9e-15  Score=83.22  Aligned_cols=86  Identities=20%  Similarity=0.292  Sum_probs=77.6

Q ss_pred             CCccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCC-ceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeC
Q psy14456          1 MHDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATG-QAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDL   78 (93)
Q Consensus         1 ~h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~-~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~   78 (93)
                      +|++.+..+.++|+    .++++++++ |.++++|+.+.. +....+.+|...+... |+.++.+++|++.|...++||+
T Consensus       213 ah~~~il~C~lSPd----~k~lat~ss-dktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~  287 (311)
T KOG0315|consen  213 AHNGHILRCLLSPD----VKYLATCSS-DKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDL  287 (311)
T ss_pred             cccceEEEEEECCC----CcEEEeecC-CceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeeccc
Confidence            58899999999999    899999885 999999999887 5556778999999988 9999999999999999999999


Q ss_pred             CCCceeeEecCcc
Q psy14456         79 RTRGCTNVLTPIT   91 (93)
Q Consensus        79 ~~~~~~~~~~~~~   91 (93)
                      +.++..+.+.+|-
T Consensus       288 ~~~k~v~qy~gh~  300 (311)
T KOG0315|consen  288 SAGKEVRQYQGHH  300 (311)
T ss_pred             ccCceeeecCCcc
Confidence            9999999888764

>KOG0265|consensus

Probab=99.65  E-value=1.5e-15  Score=85.18  Aligned_cols=83  Identities=31%  Similarity=0.486  Sum_probs=72.2

Q ss_pred             CCccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-Eec-CCCEEEEecCCCcEEEEeC
Q psy14456          1 MHDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNW-GGATVLSGSHDRTVRFWDL   78 (93)
Q Consensus         1 ~h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~-~~~~~~s~~~~~~i~~~d~   78 (93)
                      .|.++|..+.|.++    ++.++++|. |.+++.||+++|++.+.+++|..-++.+ -.- ...++.+++.|+++++||+
T Consensus        88 gHsgAVM~l~~~~d----~s~i~S~gt-Dk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~  162 (338)
T KOG0265|consen   88 GHSGAVMELHGMRD----GSHILSCGT-DKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDI  162 (338)
T ss_pred             cccceeEeeeeccC----CCEEEEecC-CceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEee
Confidence            38999999999999    788999985 9999999999999999999999988887 333 3467779999999999999


Q ss_pred             CCCceeeEec
Q psy14456         79 RTRGCTNVLT   88 (93)
Q Consensus        79 ~~~~~~~~~~   88 (93)
                      |+..+++.+.
T Consensus       163 R~k~~~~t~~  172 (338)
T KOG0265|consen  163 RKKEAIKTFE  172 (338)
T ss_pred             cccchhhccc
Confidence            9887777663

>KOG0273|consensus

Probab=99.62  E-value=6.8e-15  Score=86.56  Aligned_cols=87  Identities=24%  Similarity=0.378  Sum_probs=77.8

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCC---------CEEEEecCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGG---------ATVLSGSHDR   71 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~---------~~~~s~~~~~   71 (93)
                      |+++|.++.|.|.    +.+++++. .|+++++|......+...+.+|...|+.+ |+|.+         ..+++++.|+
T Consensus       358 H~g~V~alk~n~t----g~LLaS~S-dD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~ds  432 (524)
T KOG0273|consen  358 HHGEVNALKWNPT----GSLLASCS-DDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDS  432 (524)
T ss_pred             ccCceEEEEECCC----CceEEEec-CCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCC
Confidence            8899999999998    77777776 69999999998888899999999999999 88853         4688999999


Q ss_pred             cEEEEeCCCCceeeEecCccCC
Q psy14456         72 TVRFWDLRTRGCTNVLTPITVP   93 (93)
Q Consensus        72 ~i~~~d~~~~~~~~~~~~~~~~   93 (93)
                      ++++||+..+.++..|..|..|
T Consensus       433 tV~lwdv~~gv~i~~f~kH~~p  454 (524)
T KOG0273|consen  433 TVKLWDVESGVPIHTLMKHQEP  454 (524)
T ss_pred             eEEEEEccCCceeEeeccCCCc
Confidence            9999999999999999888765

>KOG0283|consensus

Probab=99.62  E-value=2.9e-15  Score=92.12  Aligned_cols=75  Identities=21%  Similarity=0.418  Sum_probs=67.5

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-Eec-CCCEEEEecCCCcEEEEeCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNW-GGATVLSGSHDRTVRFWDLR   79 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~-~~~~~~s~~~~~~i~~~d~~   79 (93)
                      |++.|.++.|+.+     ++|++++ .|.+|++|++....|++.|. |.+-|+|+ |+| |.+++++|+.|+.+++|++.
T Consensus       368 Ht~DILDlSWSKn-----~fLLSSS-MDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~  440 (712)
T KOG0283|consen  368 HTADILDLSWSKN-----NFLLSSS-MDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSIS  440 (712)
T ss_pred             cchhheecccccC-----CeeEecc-ccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccceEEeecC
Confidence            8899999999974     6778876 59999999999999999885 99999999 999 88999999999999999988


Q ss_pred             CCce
Q psy14456         80 TRGC   83 (93)
Q Consensus        80 ~~~~   83 (93)
                      ..+.
T Consensus       441 d~~V  444 (712)
T KOG0283|consen  441 DKKV  444 (712)
T ss_pred             cCee
Confidence            6543

>PTZ00420 coronin; Provisional

Probab=99.61  E-value=2.9e-14  Score=87.29  Aligned_cols=82  Identities=23%  Similarity=0.300  Sum_probs=66.3

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCc--------eeEEeeccccceEEE-EecCCCE-EEEecCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQ--------AFQALSGHSGHVLSL-YNWGGAT-VLSGSHDR   71 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~--------~~~~~~~~~~~v~~~-~~~~~~~-~~s~~~~~   71 (93)
                      |++.|.+++|+|..   +..+++++ .|+.|++|++.++.        ++..+.+|...|.++ |+|++.. +++++.|+
T Consensus        73 H~~~V~~lafsP~~---~~lLASgS-~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~Dg  148 (568)
T PTZ00420         73 HTSSILDLQFNPCF---SEILASGS-EDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDS  148 (568)
T ss_pred             CCCCEEEEEEcCCC---CCEEEEEe-CCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCC
Confidence            78999999999962   45666665 69999999987542        344677899999999 9997765 57899999


Q ss_pred             cEEEEeCCCCceeeEe
Q psy14456         72 TVRFWDLRTRGCTNVL   87 (93)
Q Consensus        72 ~i~~~d~~~~~~~~~~   87 (93)
                      .+++||+++++....+
T Consensus       149 tIrIWDl~tg~~~~~i  164 (568)
T PTZ00420        149 FVNIWDIENEKRAFQI  164 (568)
T ss_pred             eEEEEECCCCcEEEEE
Confidence            9999999998766554

>KOG0264|consensus

Probab=99.61  E-value=7.5e-15  Score=85.55  Aligned_cols=75  Identities=21%  Similarity=0.407  Sum_probs=65.4

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCC-ceeEEeeccccceEEE-EecC-CCEEEEecCCCcEEEEeC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATG-QAFQALSGHSGHVLSL-YNWG-GATVLSGSHDRTVRFWDL   78 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~-~~~~~~~~~~~~v~~~-~~~~-~~~~~s~~~~~~i~~~d~   78 (93)
                      |++.|.|++|.|-    +.+++++|+.|++|.+||++.. .++..+.+|...|..+ |+|. ...+++++.|+.+++||+
T Consensus       271 h~~~vn~~~fnp~----~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDl  346 (422)
T KOG0264|consen  271 HSAEVNCVAFNPF----NEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDL  346 (422)
T ss_pred             cCCceeEEEeCCC----CCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEec
Confidence            8899999999998    5666666667999999999865 4678999999999999 9994 567889999999999998


Q ss_pred             CC
Q psy14456         79 RT   80 (93)
Q Consensus        79 ~~   80 (93)
                      ..
T Consensus       347 s~  348 (422)
T KOG0264|consen  347 SR  348 (422)
T ss_pred             cc
Confidence            75

>KOG0264|consensus

Probab=99.60  E-value=5.5e-15  Score=86.07  Aligned_cols=86  Identities=27%  Similarity=0.386  Sum_probs=72.1

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCC--CceeEEeeccccceEEE-Eec-CCCEEEEecCCCcEEEEe
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCAT--GQAFQALSGHSGHVLSL-YNW-GGATVLSGSHDRTVRFWD   77 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~--~~~~~~~~~~~~~v~~~-~~~-~~~~~~s~~~~~~i~~~d   77 (93)
                      |+..|..++|++-.   .+.|+++| .|+.+.+||.++  .++.....+|.+.+.|+ |+| ++..|+|++.|+++.+||
T Consensus       226 h~~~VeDV~~h~~h---~~lF~sv~-dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwD  301 (422)
T KOG0264|consen  226 HEDVVEDVAWHPLH---EDLFGSVG-DDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWD  301 (422)
T ss_pred             CCcceehhhccccc---hhhheeec-CCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEee
Confidence            78899999999985   56677777 699999999994  55566778999999999 999 677889999999999999


Q ss_pred             CCCC-ceeeEecCcc
Q psy14456         78 LRTR-GCTNVLTPIT   91 (93)
Q Consensus        78 ~~~~-~~~~~~~~~~   91 (93)
                      +|+- +++.++..|.
T Consensus       302 lRnL~~~lh~~e~H~  316 (422)
T KOG0264|consen  302 LRNLNKPLHTFEGHE  316 (422)
T ss_pred             chhcccCceeccCCC
Confidence            9974 4677776664

>KOG0276|consensus

Probab=99.60  E-value=3.1e-15  Score=90.68  Aligned_cols=86  Identities=26%  Similarity=0.385  Sum_probs=76.5

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-Eec--CCCEEEEecCCCcEEEEeC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNW--GGATVLSGSHDRTVRFWDL   78 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~--~~~~~~s~~~~~~i~~~d~   78 (93)
                      |+--|-+++|.|..   .+.+++++ -|++|++|.+....+.+++.+|...|+|+ |-+  +..++++|+.|.++++||+
T Consensus       139 H~HyVMqv~fnPkD---~ntFaS~s-LDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDy  214 (794)
T KOG0276|consen  139 HEHYVMQVAFNPKD---PNTFASAS-LDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDY  214 (794)
T ss_pred             cceEEEEEEecCCC---ccceeeee-ccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeec
Confidence            67789999999985   66777776 59999999999999999999999999999 766  4468999999999999999


Q ss_pred             CCCceeeEecCcc
Q psy14456         79 RTRGCTNVLTPIT   91 (93)
Q Consensus        79 ~~~~~~~~~~~~~   91 (93)
                      ++.+|++++.+|+
T Consensus       215 Qtk~CV~TLeGHt  227 (794)
T KOG0276|consen  215 QTKSCVQTLEGHT  227 (794)
T ss_pred             chHHHHHHhhccc
Confidence            9999999999885

>KOG0289|consensus

Probab=99.60  E-value=1.2e-14  Score=85.02  Aligned_cols=80  Identities=20%  Similarity=0.367  Sum_probs=69.8

Q ss_pred             ceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCCCce
Q psy14456          5 TVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRGC   83 (93)
Q Consensus         5 ~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~~   83 (93)
                      .+++.+|+|+    +-.+.+ |..|+.+++||+.....+..|.+|+++|..+ |+.+|.++++++.|+.+++||+|+...
T Consensus       349 ~~ts~~fHpD----gLifgt-gt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n  423 (506)
T KOG0289|consen  349 EYTSAAFHPD----GLIFGT-GTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKN  423 (506)
T ss_pred             eeEEeeEcCC----ceEEec-cCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcc
Confidence            3889999999    555544 5679999999999998899999999999999 999999999999999999999998776


Q ss_pred             eeEecC
Q psy14456         84 TNVLTP   89 (93)
Q Consensus        84 ~~~~~~   89 (93)
                      .++|..
T Consensus       424 ~kt~~l  429 (506)
T KOG0289|consen  424 FKTIQL  429 (506)
T ss_pred             cceeec
Confidence            666643

>KOG0303|consensus

Probab=99.59  E-value=9.8e-15  Score=84.60  Aligned_cols=85  Identities=25%  Similarity=0.362  Sum_probs=75.3

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      |+.+|..+.|+|..   .+.++++|+ |..|.+|++.+++.+..+. |...|.++ |+.+|.++++.+.|+.|++||.++
T Consensus       130 H~rrVg~V~wHPtA---~NVLlsag~-Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~  204 (472)
T KOG0303|consen  130 HQRRVGLVQWHPTA---PNVLLSAGS-DNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRR  204 (472)
T ss_pred             cceeEEEEeecccc---hhhHhhccC-CceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCC
Confidence            78899999999984   566777775 9999999999999988887 99999999 999999999999999999999999


Q ss_pred             CceeeEecCcc
Q psy14456         81 RGCTNVLTPIT   91 (93)
Q Consensus        81 ~~~~~~~~~~~   91 (93)
                      +..+..-..|+
T Consensus       205 ~~~v~e~~~he  215 (472)
T KOG0303|consen  205 GTVVSEGVAHE  215 (472)
T ss_pred             CcEeeeccccc
Confidence            98776655543

>KOG0296|consensus

Probab=99.59  E-value=4.7e-14  Score=80.95  Aligned_cols=81  Identities=26%  Similarity=0.416  Sum_probs=74.8

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      |+++|.+++.+|+    .++++++| .|-.-.+|++.++.....+.+|+..|.++ |+.++.+++||..++.+.+|+..+
T Consensus        63 H~~svFavsl~P~----~~l~aTGG-gDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~st  137 (399)
T KOG0296|consen   63 HTDSVFAVSLHPN----NNLVATGG-GDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVST  137 (399)
T ss_pred             cCCceEEEEeCCC----CceEEecC-CCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEccc
Confidence            8999999999996    67777776 69999999999999999999999999999 999999999999999999999999


Q ss_pred             CceeeEe
Q psy14456         81 RGCTNVL   87 (93)
Q Consensus        81 ~~~~~~~   87 (93)
                      +.....+
T Consensus       138 g~~~~~~  144 (399)
T KOG0296|consen  138 GGEQWKL  144 (399)
T ss_pred             CceEEEe
Confidence            9877666

>KOG0275|consensus

Probab=99.59  E-value=3.5e-16  Score=89.13  Aligned_cols=86  Identities=33%  Similarity=0.476  Sum_probs=78.5

Q ss_pred             CCccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEee-ccccceEEE-EecCCCEEEEecCCCcEEEEeC
Q psy14456          1 MHDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALS-GHSGHVLSL-YNWGGATVLSGSHDRTVRFWDL   78 (93)
Q Consensus         1 ~h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~-~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~   78 (93)
                      ||..+|.|+.|+.+    ...+++ |+.||.|++|.+++|.|+..+. .|...++++ |+.++..+++++.|.++++.-+
T Consensus       261 Mmd~aVlci~FSRD----sEMlAs-GsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGl  335 (508)
T KOG0275|consen  261 MMDDAVLCISFSRD----SEMLAS-GSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGL  335 (508)
T ss_pred             ecccceEEEeeccc----HHHhhc-cCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEecc
Confidence            67889999999998    565555 5689999999999999999986 899999999 9999999999999999999999


Q ss_pred             CCCceeeEecCcc
Q psy14456         79 RTRGCTNVLTPIT   91 (93)
Q Consensus        79 ~~~~~~~~~~~~~   91 (93)
                      .+|++++.|++|+
T Consensus       336 KSGK~LKEfrGHs  348 (508)
T KOG0275|consen  336 KSGKCLKEFRGHS  348 (508)
T ss_pred             ccchhHHHhcCcc
Confidence            9999999999885

>KOG0281|consensus

Probab=99.58  E-value=1.7e-15  Score=86.90  Aligned_cols=79  Identities=32%  Similarity=0.474  Sum_probs=68.3

Q ss_pred             cceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCCCc
Q psy14456          4 GTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRG   82 (93)
Q Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~   82 (93)
                      ..|+|+.+..      .+++ +|.+|.+|++||.++..++..+.+|++.+.|+ |  +...+++|+.|.++++||.++++
T Consensus       198 kgVYClQYDD------~kiV-SGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge  268 (499)
T KOG0281|consen  198 KGVYCLQYDD------EKIV-SGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGE  268 (499)
T ss_pred             CceEEEEecc------hhhh-cccccCceEEeccccHHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCc
Confidence            5689998854      3444 46799999999999999999999999999999 7  56699999999999999999999


Q ss_pred             eeeEecCcc
Q psy14456         83 CTNVLTPIT   91 (93)
Q Consensus        83 ~~~~~~~~~   91 (93)
                      ++.++..|.
T Consensus       269 ~l~tlihHc  277 (499)
T KOG0281|consen  269 PLNTLIHHC  277 (499)
T ss_pred             hhhHHhhhc
Confidence            988877664

>KOG0647|consensus

Probab=99.58  E-value=4.3e-14  Score=79.59  Aligned_cols=80  Identities=36%  Similarity=0.629  Sum_probs=67.9

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCC--EEEEecCCCcEEEEeC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGA--TVLSGSHDRTVRFWDL   78 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~--~~~s~~~~~~i~~~d~   78 (93)
                      |.++|.+++|+.+    +.+++++++ |+.+++||+.+++. ..+..|.+++.++ |-+...  .|+||+.|.+++.||.
T Consensus        71 ~~~PvL~v~Wsdd----gskVf~g~~-Dk~~k~wDL~S~Q~-~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~  144 (347)
T KOG0647|consen   71 HDGPVLDVCWSDD----GSKVFSGGC-DKQAKLWDLASGQV-SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDT  144 (347)
T ss_pred             cCCCeEEEEEccC----CceEEeecc-CCceEEEEccCCCe-eeeeecccceeEEEEecCCCcceeEecccccceeeccc
Confidence            7899999999999    788888885 99999999999965 4456799999999 776544  7899999999999999


Q ss_pred             CCCceeeEe
Q psy14456         79 RTRGCTNVL   87 (93)
Q Consensus        79 ~~~~~~~~~   87 (93)
                      |+...+..+
T Consensus       145 R~~~pv~t~  153 (347)
T KOG0647|consen  145 RSSNPVATL  153 (347)
T ss_pred             CCCCeeeee
Confidence            987665554

>KOG0279|consensus

Probab=99.58  E-value=3.8e-14  Score=79.02  Aligned_cols=74  Identities=30%  Similarity=0.522  Sum_probs=68.1

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      |.-.|..+..+++    +++.++++ .|+++++||+.+++..+.|.+|...+.++ |+++.+.+++|+.|+++++|+...
T Consensus        62 HsH~v~dv~~s~d----g~~alS~s-wD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g  136 (315)
T KOG0279|consen   62 HSHFVSDVVLSSD----GNFALSAS-WDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG  136 (315)
T ss_pred             cceEecceEEccC----CceEEecc-ccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecc
Confidence            6778999999999    78777766 69999999999999999999999999999 999999999999999999999864

>KOG0275|consensus

Probab=99.58  E-value=2.3e-15  Score=85.89  Aligned_cols=85  Identities=26%  Similarity=0.471  Sum_probs=78.2

Q ss_pred             CCccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCC
Q psy14456          1 MHDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLR   79 (93)
Q Consensus         1 ~h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~   79 (93)
                      .|+..|+|+.|+.+    ++.+++++ -|.++++.-+.+|++++.+.+|.+.++.. |.++|..+++++.|+++++|+..
T Consensus       304 AHtkGvt~l~FSrD----~SqiLS~s-fD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~K  378 (508)
T KOG0275|consen  304 AHTKGVTCLSFSRD----NSQILSAS-FDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGK  378 (508)
T ss_pred             hhccCeeEEEEccC----cchhhccc-ccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCc
Confidence            38899999999999    67778776 59999999999999999999999999999 99999999999999999999999


Q ss_pred             CCceeeEecCc
Q psy14456         80 TRGCTNVLTPI   90 (93)
Q Consensus        80 ~~~~~~~~~~~   90 (93)
                      +..|+.+|...
T Consensus       379 tteC~~Tfk~~  389 (508)
T KOG0275|consen  379 TTECLSTFKPL  389 (508)
T ss_pred             chhhhhhccCC
Confidence            99999888753

>KOG0295|consensus

Probab=99.57  E-value=2.8e-14  Score=81.85  Aligned_cols=87  Identities=30%  Similarity=0.480  Sum_probs=79.7

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      |.-.|.++.|-|.    +..+++++ +|.+|++|+..++.+++++.+|...+..+ .+.||..+++++.|.++++|-+.+
T Consensus       192 h~h~vS~V~f~P~----gd~ilS~s-rD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t  266 (406)
T KOG0295|consen  192 HEHGVSSVFFLPL----GDHILSCS-RDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVAT  266 (406)
T ss_pred             cccceeeEEEEec----CCeeeecc-cccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEecc
Confidence            5667999999998    78888877 89999999999999999999999999888 888999999999999999999999


Q ss_pred             CceeeEecCccCC
Q psy14456         81 RGCTNVLTPITVP   93 (93)
Q Consensus        81 ~~~~~~~~~~~~~   93 (93)
                      ++|...++.|+.|
T Consensus       267 ~~~k~~lR~hEh~  279 (406)
T KOG0295|consen  267 KQCKAELREHEHP  279 (406)
T ss_pred             chhhhhhhccccc
Confidence            9998888888764

>KOG1273|consensus

Probab=99.56  E-value=2.4e-14  Score=81.27  Aligned_cols=78  Identities=22%  Similarity=0.331  Sum_probs=70.7

Q ss_pred             eeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCCCcee
Q psy14456          6 VRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRGCT   84 (93)
Q Consensus         6 v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~~~   84 (93)
                      ..|+.|++.    +.+++.++ .+|.+-+||+.+...-+.+.+|..+|.++ |+++|++++|++.|..+.+||+..|.++
T Consensus        26 a~~~~Fs~~----G~~lAvGc-~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l  100 (405)
T KOG1273|consen   26 AECCQFSRW----GDYLAVGC-ANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPL  100 (405)
T ss_pred             cceEEeccC----cceeeeec-cCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCce
Confidence            678999998    67777655 69999999999998888899999999999 9999999999999999999999999988


Q ss_pred             eEec
Q psy14456         85 NVLT   88 (93)
Q Consensus        85 ~~~~   88 (93)
                      +.++
T Consensus       101 ~rir  104 (405)
T KOG1273|consen  101 KRIR  104 (405)
T ss_pred             eEEE
Confidence            7765

>KOG1034|consensus

Probab=99.56  E-value=2.6e-14  Score=81.28  Aligned_cols=76  Identities=24%  Similarity=0.528  Sum_probs=65.9

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEe---eccccceEEE-EecCCCEEEEecCCCcEEEEe
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQAL---SGHSGHVLSL-YNWGGATVLSGSHDRTVRFWD   77 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~---~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d   77 (93)
                      |...|..+.++|..   .+++++ +++|..|++|+++++.++..+   .+|...|.++ |+.++..+++++.|..+++|+
T Consensus       134 hG~sINeik~~p~~---~qlvls-~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~  209 (385)
T KOG1034|consen  134 HGGSINEIKFHPDR---PQLVLS-ASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWR  209 (385)
T ss_pred             cCccchhhhcCCCC---CcEEEE-ecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEe
Confidence            77899999999983   345555 557999999999999988766   5799999999 999999999999999999999


Q ss_pred             CCCC
Q psy14456         78 LRTR   81 (93)
Q Consensus        78 ~~~~   81 (93)
                      +...
T Consensus       210 l~~~  213 (385)
T KOG1034|consen  210 LNVK  213 (385)
T ss_pred             cChh
Confidence            9854

>KOG0643|consensus

Probab=99.56  E-value=1.2e-13  Score=76.86  Aligned_cols=82  Identities=23%  Similarity=0.462  Sum_probs=76.8

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      |..+++.+.|..+    +.++++++ .|....+|-...|+.+.++.+|++.|.++ .+.+...+++|+.|..+++||+++
T Consensus         9 HERplTqiKyN~e----GDLlFsca-KD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~t   83 (327)
T KOG0643|consen    9 HERPLTQIKYNRE----GDLLFSCA-KDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVET   83 (327)
T ss_pred             CccccceEEecCC----CcEEEEec-CCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCC
Confidence            7889999999998    89999998 69999999998999999999999999999 888899999999999999999999


Q ss_pred             CceeeEec
Q psy14456         81 RGCTNVLT   88 (93)
Q Consensus        81 ~~~~~~~~   88 (93)
                      |+++..+.
T Consensus        84 Gk~la~~k   91 (327)
T KOG0643|consen   84 GKQLATWK   91 (327)
T ss_pred             CcEEEEee
Confidence            99887765

>KOG0315|consensus

Probab=99.55  E-value=1.2e-13  Score=76.36  Aligned_cols=81  Identities=23%  Similarity=0.394  Sum_probs=69.5

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      |++.|+.+.|.-+    ++.+++++ +||+++|||++..++...+ .+.++|+++ .+|...-|+++..++.|++||+..
T Consensus        82 h~kNVtaVgF~~d----grWMyTgs-eDgt~kIWdlR~~~~qR~~-~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~  155 (311)
T KOG0315|consen   82 HTKNVTAVGFQCD----GRWMYTGS-EDGTVKIWDLRSLSCQRNY-QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGE  155 (311)
T ss_pred             cCCceEEEEEeec----CeEEEecC-CCceEEEEeccCcccchhc-cCCCCcceEEecCCcceEEeecCCCcEEEEEccC
Confidence            7889999999998    89999987 7999999999986665555 477999999 999888899999999999999998


Q ss_pred             CceeeEec
Q psy14456         81 RGCTNVLT   88 (93)
Q Consensus        81 ~~~~~~~~   88 (93)
                      ..+...+.
T Consensus       156 ~~c~~~li  163 (311)
T KOG0315|consen  156 NSCTHELI  163 (311)
T ss_pred             CccccccC
Confidence            86655443

>KOG0277|consensus

Probab=99.55  E-value=1.2e-13  Score=76.41  Aligned_cols=86  Identities=21%  Similarity=0.284  Sum_probs=73.0

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-Eec-CCCEEEEecCCCcEEEEeCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNW-GGATVLSGSHDRTVRFWDLR   79 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~-~~~~~~s~~~~~~i~~~d~~   79 (93)
                      |...|.++.|.+..   +..++++ +=|++|++|+.+....+.++.+|++.|... |+| .++++++++.|+++++||++
T Consensus       103 H~~EV~Svdwn~~~---r~~~lts-SWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr  178 (311)
T KOG0277|consen  103 HKREVYSVDWNTVR---RRIFLTS-SWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVR  178 (311)
T ss_pred             hhhheEEecccccc---ceeEEee-ccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEec
Confidence            77889999998874   4556665 579999999999999999999999999999 999 68899999999999999999


Q ss_pred             CCceeeEecCcc
Q psy14456         80 TRGCTNVLTPIT   91 (93)
Q Consensus        80 ~~~~~~~~~~~~   91 (93)
                      .......|..|.
T Consensus       179 ~~gk~~~i~ah~  190 (311)
T KOG0277|consen  179 SPGKFMSIEAHN  190 (311)
T ss_pred             CCCceeEEEecc
Confidence            765555566554

>KOG0308|consensus

Probab=99.54  E-value=7.9e-14  Score=84.81  Aligned_cols=85  Identities=26%  Similarity=0.451  Sum_probs=75.0

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      +..+|++++-.+.    +..++++| ..+.+++||.++.+.+-.+.+|+..|.++ .+.+|..+++++.|++|++||+..
T Consensus       170 ~k~siYSLA~N~t----~t~ivsGg-tek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgq  244 (735)
T KOG0308|consen  170 PKDSIYSLAMNQT----GTIIVSGG-TEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQ  244 (735)
T ss_pred             CccceeeeecCCc----ceEEEecC-cccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccc
Confidence            3467888888776    56667766 59999999999999998999999999999 999999999999999999999999


Q ss_pred             CceeeEecCcc
Q psy14456         81 RGCTNVLTPIT   91 (93)
Q Consensus        81 ~~~~~~~~~~~   91 (93)
                      ..|+.++..|.
T Consensus       245 QrCl~T~~vH~  255 (735)
T KOG0308|consen  245 QRCLATYIVHK  255 (735)
T ss_pred             cceeeeEEecc
Confidence            99999987764

>KOG0645|consensus

Probab=99.54  E-value=3.1e-13  Score=75.26  Aligned_cols=85  Identities=25%  Similarity=0.452  Sum_probs=72.5

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCC--ceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATG--QAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDL   78 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~--~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~   78 (93)
                      |+..|..++|+|.    ++++++ ++-|.++.+|.-..+  +++..+.+|.++|.++ |+.+|++|++|+.|+.+-+|.+
T Consensus        60 hkrsVRsvAwsp~----g~~La~-aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~  134 (312)
T KOG0645|consen   60 HKRSVRSVAWSPH----GRYLAS-ASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEI  134 (312)
T ss_pred             chheeeeeeecCC----CcEEEE-eeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEe
Confidence            8899999999998    676655 457999999986644  6788999999999999 9999999999999999999988


Q ss_pred             CCC---ceeeEecCcc
Q psy14456         79 RTR---GCTNVLTPIT   91 (93)
Q Consensus        79 ~~~---~~~~~~~~~~   91 (93)
                      ..+   .+..++.+|+
T Consensus       135 deddEfec~aVL~~Ht  150 (312)
T KOG0645|consen  135 DEDDEFECIAVLQEHT  150 (312)
T ss_pred             cCCCcEEEEeeecccc
Confidence            754   4667776665

>KOG0281|consensus

Probab=99.54  E-value=9.9e-15  Score=83.84  Aligned_cols=82  Identities=32%  Similarity=0.514  Sum_probs=70.9

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEEEecCCCEEEEecCCCcEEEEeCCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWGGATVLSGSHDRTVRFWDLRTR   81 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~   81 (93)
                      |.++|+.+.|+      .++++++. .|.++++|+..+...+.++.+|+-.|.|+ -..+.++++|+.|.+|++||++.|
T Consensus       319 HrAaVNvVdfd------~kyIVsAS-gDRTikvW~~st~efvRtl~gHkRGIACl-QYr~rlvVSGSSDntIRlwdi~~G  390 (499)
T KOG0281|consen  319 HRAAVNVVDFD------DKYIVSAS-GDRTIKVWSTSTCEFVRTLNGHKRGIACL-QYRDRLVVSGSSDNTIRLWDIECG  390 (499)
T ss_pred             hhhheeeeccc------cceEEEec-CCceEEEEeccceeeehhhhcccccceeh-hccCeEEEecCCCceEEEEecccc
Confidence            67788888885      35666665 59999999999999999999999999887 236889999999999999999999


Q ss_pred             ceeeEecCcc
Q psy14456         82 GCTNVLTPIT   91 (93)
Q Consensus        82 ~~~~~~~~~~   91 (93)
                      .+++++.+|+
T Consensus       391 ~cLRvLeGHE  400 (499)
T KOG0281|consen  391 ACLRVLEGHE  400 (499)
T ss_pred             HHHHHHhchH
Confidence            9999998875

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.54  E-value=5.6e-13  Score=74.11  Aligned_cols=84  Identities=42%  Similarity=0.661  Sum_probs=72.8

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      |.++|.+++|+|+    ++.+++++ .++.+.+|+...+.....+..|...+..+ |.+++..+++++.++.+.+||+++
T Consensus         8 h~~~i~~~~~~~~----~~~l~~~~-~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~   82 (289)
T cd00200           8 HTGGVTCVAFSPD----GKLLATGS-GDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET   82 (289)
T ss_pred             cCCCEEEEEEcCC----CCEEEEee-cCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence            7899999999998    67777776 59999999999888888888888888888 999888999999999999999998


Q ss_pred             CceeeEecCc
Q psy14456         81 RGCTNVLTPI   90 (93)
Q Consensus        81 ~~~~~~~~~~   90 (93)
                      +.....+..+
T Consensus        83 ~~~~~~~~~~   92 (289)
T cd00200          83 GECVRTLTGH   92 (289)
T ss_pred             ccceEEEecc
Confidence            7666666544

>KOG0647|consensus

Probab=99.52  E-value=1.1e-13  Score=77.97  Aligned_cols=84  Identities=23%  Similarity=0.477  Sum_probs=67.5

Q ss_pred             ccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCC-Ccee-EEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCC
Q psy14456          3 DGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCAT-GQAF-QALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLR   79 (93)
Q Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~-~~~~-~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~   79 (93)
                      ...|.+++|+|.    ...++++|+=|++||+|+++. +... +....|.+++.++ |+.++.++++++.|+.+++||+.
T Consensus        27 ~DsIS~l~FSP~----~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~  102 (347)
T KOG0647|consen   27 EDSISALAFSPQ----ADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLA  102 (347)
T ss_pred             ccchheeEeccc----cCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEcc
Confidence            357899999996    566776777899999999875 3332 4456789999999 99999999999999999999999


Q ss_pred             CCceeeEecCcc
Q psy14456         80 TRGCTNVLTPIT   91 (93)
Q Consensus        80 ~~~~~~~~~~~~   91 (93)
                      +++. ..+..|.
T Consensus       103 S~Q~-~~v~~Hd  113 (347)
T KOG0647|consen  103 SGQV-SQVAAHD  113 (347)
T ss_pred             CCCe-eeeeecc
Confidence            9954 3344443

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.52  E-value=6.1e-13  Score=84.47  Aligned_cols=83  Identities=20%  Similarity=0.336  Sum_probs=70.0

Q ss_pred             ccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-Eec-CCCEEEEecCCCcEEEEeCCC
Q psy14456          3 DGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNW-GGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~-~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      ...|.+++|++..   +..+++++ .|+.|++||+.+++.+..+.+|...|.++ |++ ++.++++++.|+.+++||+++
T Consensus       532 ~~~v~~l~~~~~~---~~~las~~-~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~  607 (793)
T PLN00181        532 RSKLSGICWNSYI---KSQVASSN-FEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQ  607 (793)
T ss_pred             cCceeeEEeccCC---CCEEEEEe-CCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCC
Confidence            3567889998753   45666666 69999999999999889999999999999 987 788999999999999999998


Q ss_pred             CceeeEecC
Q psy14456         81 RGCTNVLTP   89 (93)
Q Consensus        81 ~~~~~~~~~   89 (93)
                      +.++..+..
T Consensus       608 ~~~~~~~~~  616 (793)
T PLN00181        608 GVSIGTIKT  616 (793)
T ss_pred             CcEEEEEec
Confidence            877766543

>KOG0316|consensus

Probab=99.51  E-value=1.1e-13  Score=75.97  Aligned_cols=81  Identities=35%  Similarity=0.510  Sum_probs=70.6

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      |...|..++.+.+    +..++++|. |..+.+||+++|+....+.+|.+.|+.+ |+.+...+++++.|..+++||-++
T Consensus        58 hG~EVlD~~~s~D----nskf~s~Gg-Dk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS  132 (307)
T KOG0316|consen   58 HGHEVLDAALSSD----NSKFASCGG-DKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRS  132 (307)
T ss_pred             CCceeeecccccc----ccccccCCC-CceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEccc
Confidence            4556777777777    778899884 9999999999999999999999999999 999999999999999999999987


Q ss_pred             C--ceeeEe
Q psy14456         81 R--GCTNVL   87 (93)
Q Consensus        81 ~--~~~~~~   87 (93)
                      .  ++++.+
T Consensus       133 ~s~ePiQil  141 (307)
T KOG0316|consen  133 RSFEPIQIL  141 (307)
T ss_pred             CCCCccchh
Confidence            5  345554

>KOG1407|consensus

Probab=99.51  E-value=5.4e-14  Score=77.97  Aligned_cols=52  Identities=21%  Similarity=0.518  Sum_probs=46.7

Q ss_pred             eeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCCCceeeEecCccCC
Q psy14456         42 AFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRGCTNVLTPITVP   93 (93)
Q Consensus        42 ~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~~~   93 (93)
                      ++..+++|.....|+ |+|+|+++++|+.|..+.+||+..--|.+.|..+.+|
T Consensus       181 pv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwp  233 (313)
T KOG1407|consen  181 PVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWP  233 (313)
T ss_pred             cccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCc
Confidence            456777899999999 9999999999999999999999999999999887665

>KOG0310|consensus

Probab=99.51  E-value=6.2e-13  Score=78.53  Aligned_cols=82  Identities=27%  Similarity=0.327  Sum_probs=69.8

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-Eec-CCCEEEEecCCCcEEEEeCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNW-GGATVLSGSHDRTVRFWDLR   79 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~-~~~~~~s~~~~~~i~~~d~~   79 (93)
                      |+.+|....|+|.    ...++++|+.|+.+++||+.+......+.+|++.|.+. ++| .+..++||+.|+.|++||.+
T Consensus       109 h~apv~~~~f~~~----d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR  184 (487)
T KOG0310|consen  109 HQAPVHVTKFSPQ----DNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTR  184 (487)
T ss_pred             ccCceeEEEeccc----CCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEec
Confidence            8899999999998    56666667679999999999988766889999999999 988 45688999999999999999


Q ss_pred             CC-ceeeEe
Q psy14456         80 TR-GCTNVL   87 (93)
Q Consensus        80 ~~-~~~~~~   87 (93)
                      .. ..+..+
T Consensus       185 ~~~~~v~el  193 (487)
T KOG0310|consen  185 SLTSRVVEL  193 (487)
T ss_pred             cCCceeEEe
Confidence            87 444444

>KOG0269|consensus

Probab=99.51  E-value=7.9e-14  Score=86.04  Aligned_cols=41  Identities=27%  Similarity=0.551  Sum_probs=36.2

Q ss_pred             eeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCCCc
Q psy14456         42 AFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRG   82 (93)
Q Consensus        42 ~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~   82 (93)
                      +...+.+|++++.|+ |+|+..+|+||+.|+.+++||...+.
T Consensus       212 ~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~  253 (839)
T KOG0269|consen  212 CEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSR  253 (839)
T ss_pred             HHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCC
Confidence            445667899999999 99999999999999999999988653

>KOG0313|consensus

Probab=99.51  E-value=1.1e-13  Score=79.78  Aligned_cols=82  Identities=30%  Similarity=0.398  Sum_probs=67.4

Q ss_pred             cceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCc---eeEEeeccccceEEE-Eec-CCCEEEEecCCCcEEEEeC
Q psy14456          4 GTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQ---AFQALSGHSGHVLSL-YNW-GGATVLSGSHDRTVRFWDL   78 (93)
Q Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~---~~~~~~~~~~~v~~~-~~~-~~~~~~s~~~~~~i~~~d~   78 (93)
                      ..++|++++|.    ..++++++ .|..+++||.+++.   ..+.+.+|++.|..+ |+| +...+++++.|+++++||+
T Consensus       301 ksl~~i~~~~~----~~Ll~~gs-sdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDv  375 (423)
T KOG0313|consen  301 KSLNCISYSPL----SKLLASGS-SDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDV  375 (423)
T ss_pred             cceeEeecccc----cceeeecC-CCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEe
Confidence            46778888886    56666665 59999999998763   357888999999999 999 5678899999999999999


Q ss_pred             CCCc-eeeEecCc
Q psy14456         79 RTRG-CTNVLTPI   90 (93)
Q Consensus        79 ~~~~-~~~~~~~~   90 (93)
                      |+.. .+..+.+|
T Consensus       376 RS~k~plydI~~h  388 (423)
T KOG0313|consen  376 RSTKAPLYDIAGH  388 (423)
T ss_pred             ccCCCcceeeccC
Confidence            9876 78777766

>KOG0274|consensus

Probab=99.51  E-value=1.2e-13  Score=84.24  Aligned_cols=82  Identities=43%  Similarity=0.644  Sum_probs=71.2

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      |+++|.++...      ...++++ +.|++|++|++.+++++..+.+|+..|.++ +... ..+++|+.|+.|++||+++
T Consensus       330 h~~~V~~v~~~------~~~lvsg-s~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~  401 (537)
T KOG0274|consen  330 HTGPVNCVQLD------EPLLVSG-SYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRT  401 (537)
T ss_pred             ccccEEEEEec------CCEEEEE-ecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCc
Confidence            88999999986      3455555 479999999999999999999999999998 6544 8899999999999999999


Q ss_pred             C-ceeeEecCcc
Q psy14456         81 R-GCTNVLTPIT   91 (93)
Q Consensus        81 ~-~~~~~~~~~~   91 (93)
                      . +|+..+..|.
T Consensus       402 ~~~c~~tl~~h~  413 (537)
T KOG0274|consen  402 KRKCIHTLQGHT  413 (537)
T ss_pred             hhhhhhhhcCCc
Confidence            9 8888887764

>KOG0274|consensus

Probab=99.50  E-value=7.8e-13  Score=80.77  Aligned_cols=86  Identities=36%  Similarity=0.567  Sum_probs=74.1

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEEEecCCCEEEEecCCCcEEEEeCCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWGGATVLSGSHDRTVRFWDLRTR   81 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~   81 (93)
                      |.+.|.++++.-.    +.+++++ +.|.++++||..++++...+.+|.+.+.++ ...+..+++|+.|.++++|+++++
T Consensus       248 H~g~V~~l~~~~~----~~~lvsg-S~D~t~rvWd~~sg~C~~~l~gh~stv~~~-~~~~~~~~sgs~D~tVkVW~v~n~  321 (537)
T KOG0274|consen  248 HFGGVWGLAFPSG----GDKLVSG-STDKTERVWDCSTGECTHSLQGHTSSVRCL-TIDPFLLVSGSRDNTVKVWDVTNG  321 (537)
T ss_pred             CCCCceeEEEecC----CCEEEEE-ecCCcEEeEecCCCcEEEEecCCCceEEEE-EccCceEeeccCCceEEEEeccCc
Confidence            8899999999753    5666665 469999999999999999999999999987 556778888999999999999999


Q ss_pred             ceeeEecCccCC
Q psy14456         82 GCTNVLTPITVP   93 (93)
Q Consensus        82 ~~~~~~~~~~~~   93 (93)
                      .++..+.+|..|
T Consensus       322 ~~l~l~~~h~~~  333 (537)
T KOG0274|consen  322 ACLNLLRGHTGP  333 (537)
T ss_pred             ceEEEecccccc
Confidence            999999877653

>KOG0282|consensus

Probab=99.50  E-value=2.3e-14  Score=84.46  Aligned_cols=82  Identities=22%  Similarity=0.332  Sum_probs=69.6

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCC-CEEEEecCCCcEEEEeCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGG-ATVLSGSHDRTVRFWDLR   79 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~-~~~~s~~~~~~i~~~d~~   79 (93)
                      |..+|.+++|+++    +..+++++ -|+.+++||.++|+++..+. -...+.|+ |+|++ +.+++|..|+.|+.||+|
T Consensus       257 H~k~Vrd~~~s~~----g~~fLS~s-fD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiR  330 (503)
T KOG0282|consen  257 HRKPVRDASFNNC----GTSFLSAS-FDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIR  330 (503)
T ss_pred             chhhhhhhhcccc----CCeeeeee-cceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEecc
Confidence            7889999999998    77888887 69999999999999999884 23456788 99977 788899999999999999


Q ss_pred             CCceeeEecC
Q psy14456         80 TRGCTNVLTP   89 (93)
Q Consensus        80 ~~~~~~~~~~   89 (93)
                      ++..++.+..
T Consensus       331 s~kvvqeYd~  340 (503)
T KOG0282|consen  331 SGKVVQEYDR  340 (503)
T ss_pred             chHHHHHHHh
Confidence            9976655543

>KOG0641|consensus

Probab=99.50  E-value=1e-12  Score=72.17  Aligned_cols=89  Identities=58%  Similarity=1.178  Sum_probs=79.8

Q ss_pred             CCccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEEEecCCCEEEEecCCCcEEEEeCCC
Q psy14456          1 MHDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         1 ~h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      ||.+.|..++|..+.+.++..++++|..|..|.+-|..+++..+.+.+|++.|..+++..+-.+++++.|.+|+.||++-
T Consensus       134 mhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv  213 (350)
T KOG0641|consen  134 MHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRV  213 (350)
T ss_pred             ecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeec
Confidence            79999999999988777778888888778889888999999999999999999998777899999999999999999999


Q ss_pred             CceeeEecC
Q psy14456         81 RGCTNVLTP   89 (93)
Q Consensus        81 ~~~~~~~~~   89 (93)
                      ..+++++..
T Consensus       214 ~~~v~~l~~  222 (350)
T KOG0641|consen  214 NSCVNTLDN  222 (350)
T ss_pred             cceeeeccC
Confidence            888887754

>KOG0291|consensus

Probab=99.49  E-value=6.6e-13  Score=82.13  Aligned_cols=85  Identities=21%  Similarity=0.328  Sum_probs=77.1

Q ss_pred             cceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCCCc
Q psy14456          4 GTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRG   82 (93)
Q Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~   82 (93)
                      .+|..++|.-.    +++++.++++-|.+-+|+-++..-+...++|...+.++ ++|||++++||+.|+.|++||.+++-
T Consensus       308 ~~I~t~~~N~t----GDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sgf  383 (893)
T KOG0291|consen  308 QKILTVSFNST----GDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGF  383 (893)
T ss_pred             ceeeEEEeccc----CCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCce
Confidence            56778888776    78988888777899999999888888889999999999 99999999999999999999999999


Q ss_pred             eeeEecCccC
Q psy14456         83 CTNVLTPITV   92 (93)
Q Consensus        83 ~~~~~~~~~~   92 (93)
                      |..+|..|+.
T Consensus       384 C~vTFteHts  393 (893)
T KOG0291|consen  384 CFVTFTEHTS  393 (893)
T ss_pred             EEEEeccCCC
Confidence            9999999864

>KOG0277|consensus

Probab=99.49  E-value=5.9e-13  Score=73.78  Aligned_cols=86  Identities=21%  Similarity=0.346  Sum_probs=67.6

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-Eec-CCCEEEEecCCCcEEEEeCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNW-GGATVLSGSHDRTVRFWDLR   79 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~-~~~~~~s~~~~~~i~~~d~~   79 (93)
                      |..-|+...|+|..   .+.++++ +.|+.+++||++.......+..|..++.+. |+. +...++|++.|+.|++||++
T Consensus       146 h~~~Iy~a~~sp~~---~nlfas~-Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir  221 (311)
T KOG0277|consen  146 HNSCIYQAAFSPHI---PNLFASA-SGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIR  221 (311)
T ss_pred             CccEEEEEecCCCC---CCeEEEc-cCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehh
Confidence            66789999999984   4455554 469999999998654444488899999999 877 77899999999999999999


Q ss_pred             CCc-eeeEecCcc
Q psy14456         80 TRG-CTNVLTPIT   91 (93)
Q Consensus        80 ~~~-~~~~~~~~~   91 (93)
                      .-. ++..+.+|.
T Consensus       222 ~~r~pl~eL~gh~  234 (311)
T KOG0277|consen  222 NLRTPLFELNGHG  234 (311)
T ss_pred             hccccceeecCCc
Confidence            743 466665554

>KOG0276|consensus

Probab=99.49  E-value=4.7e-13  Score=81.51  Aligned_cols=86  Identities=23%  Similarity=0.316  Sum_probs=76.2

Q ss_pred             CCccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCC-ceeEEeeccccceEEE-Eec-CCCEEEEecCCCcEEEEe
Q psy14456          1 MHDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATG-QAFQALSGHSGHVLSL-YNW-GGATVLSGSHDRTVRFWD   77 (93)
Q Consensus         1 ~h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~-~~~~~~~~~~~~v~~~-~~~-~~~~~~s~~~~~~i~~~d   77 (93)
                      .|..-|.+++.+|.    ..+++++. .|-.|++|+-+.+ .+.+.+.+|..-|..+ |+| |.+.+++++.|+++++|+
T Consensus        95 AH~DyIR~iavHPt----~P~vLtsS-DDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWs  169 (794)
T KOG0276|consen   95 AHSDYIRSIAVHPT----LPYVLTSS-DDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWS  169 (794)
T ss_pred             ccccceeeeeecCC----CCeEEecC-CccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEE
Confidence            37889999999998    67777765 6999999998765 5678899999999999 999 789999999999999999


Q ss_pred             CCCCceeeEecCcc
Q psy14456         78 LRTRGCTNVLTPIT   91 (93)
Q Consensus        78 ~~~~~~~~~~~~~~   91 (93)
                      +.+..+..++.+|+
T Consensus       170 lgs~~~nfTl~gHe  183 (794)
T KOG0276|consen  170 LGSPHPNFTLEGHE  183 (794)
T ss_pred             cCCCCCceeeeccc
Confidence            99999999998875

>KOG0640|consensus

Probab=99.49  E-value=1.9e-13  Score=77.68  Aligned_cols=84  Identities=24%  Similarity=0.427  Sum_probs=72.7

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEee-ccc-cceEEE-EecCCCEEEEecCCCcEEEEeC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALS-GHS-GHVLSL-YNWGGATVLSGSHDRTVRFWDL   78 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~-~~~-~~v~~~-~~~~~~~~~s~~~~~~i~~~d~   78 (93)
                      |++.|+++.+++.    +++.+++. .||.|++||--+++|+.++. .|. +.|.+. |.-++.++++.++|+.+++|++
T Consensus       260 ht~ai~~V~Ys~t----~~lYvTaS-kDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi  334 (430)
T KOG0640|consen  260 HTGAITQVRYSST----GSLYVTAS-KDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEI  334 (430)
T ss_pred             cccceeEEEecCC----ccEEEEec-cCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeee
Confidence            7899999999998    67777754 79999999999999988884 455 467777 9999999999999999999999


Q ss_pred             CCCceeeEecCc
Q psy14456         79 RTRGCTNVLTPI   90 (93)
Q Consensus        79 ~~~~~~~~~~~~   90 (93)
                      .++.+++.+.+.
T Consensus       335 ~t~R~l~~YtGA  346 (430)
T KOG0640|consen  335 STGRMLKEYTGA  346 (430)
T ss_pred             cCCceEEEEecC
Confidence            999999988653

>KOG0294|consensus

Probab=99.48  E-value=5e-13  Score=75.74  Aligned_cols=83  Identities=22%  Similarity=0.357  Sum_probs=71.9

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCC--CEEEEecCCCcEEEEeC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGG--ATVLSGSHDRTVRFWDL   78 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~--~~~~s~~~~~~i~~~d~   78 (93)
                      |.+++++++.+      +.++++++ .|.+|++||+++...+..+..|.+.++++ |.+.-  +.+++|+.||.|.+|+.
T Consensus        42 H~~sitavAVs------~~~~aSGs-sDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~  114 (362)
T KOG0294|consen   42 HAGSITALAVS------GPYVASGS-SDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRV  114 (362)
T ss_pred             cccceeEEEec------ceeEeccC-CCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEc
Confidence            88999999985      45666655 59999999999999999999999999999 87754  38999999999999999


Q ss_pred             CCCceeeEecCcc
Q psy14456         79 RTRGCTNVLTPIT   91 (93)
Q Consensus        79 ~~~~~~~~~~~~~   91 (93)
                      ..-.++..+.+|.
T Consensus       115 ~~W~~~~slK~H~  127 (362)
T KOG0294|consen  115 GSWELLKSLKAHK  127 (362)
T ss_pred             CCeEEeeeecccc
Confidence            9888888888775

>KOG0283|consensus

Probab=99.48  E-value=1.4e-13  Score=84.99  Aligned_cols=83  Identities=30%  Similarity=0.526  Sum_probs=71.0

Q ss_pred             CCccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCC--------------------------------C--------
Q psy14456          1 MHDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCAT--------------------------------G--------   40 (93)
Q Consensus         1 ~h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~--------------------------------~--------   40 (93)
                      .|.+.|.++.|+++    +++++++| +|+.|+||.+..                                .        
T Consensus       265 ah~gaIw~mKFS~D----GKyLAsaG-eD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~  339 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHD----GKYLASAG-EDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS  339 (712)
T ss_pred             ccCCcEEEEEeCCC----CceeeecC-CCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence            38899999999999    89999998 799999997533                                0        


Q ss_pred             --------------------ceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCCCceeeEecC
Q psy14456         41 --------------------QAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRGCTNVLTP   89 (93)
Q Consensus        41 --------------------~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~   89 (93)
                                          .+++.+.+|.+.|..+ |+- .++|+++++|.++++|++....|+..|.-
T Consensus       340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~H  408 (712)
T KOG0283|consen  340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVFSH  408 (712)
T ss_pred             ccccCCccccCCCccccccccchhhhhccchhheeccccc-CCeeEeccccccEEeecCCCcceeeEEec
Confidence                                2456778999999999 875 57889999999999999999999999853

>KOG0973|consensus

Probab=99.47  E-value=6.8e-13  Score=83.88  Aligned_cols=86  Identities=30%  Similarity=0.402  Sum_probs=75.6

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCC------------------CceeEEeeccccceEEE-EecCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCAT------------------GQAFQALSGHSGHVLSL-YNWGGA   62 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~------------------~~~~~~~~~~~~~v~~~-~~~~~~   62 (93)
                      |.+.|+|+.|+|+    ++++++++ +|+.|.+|....                  .+++..+.+|.+.|..+ |+|++.
T Consensus        68 h~~sv~CVR~S~d----G~~lAsGS-DD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~  142 (942)
T KOG0973|consen   68 HDGSVNCVRFSPD----GSYLASGS-DDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS  142 (942)
T ss_pred             ccCceeEEEECCC----CCeEeecc-CcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc
Confidence            7899999999999    78877765 699999998762                  13567788999999999 999999


Q ss_pred             EEEEecCCCcEEEEeCCCCceeeEecCccC
Q psy14456         63 TVLSGSHDRTVRFWDLRTRGCTNVLTPITV   92 (93)
Q Consensus        63 ~~~s~~~~~~i~~~d~~~~~~~~~~~~~~~   92 (93)
                      ++++++.|..|.+|+.++...+..+.+|..
T Consensus       143 ~lvS~s~DnsViiwn~~tF~~~~vl~~H~s  172 (942)
T KOG0973|consen  143 LLVSVSLDNSVIIWNAKTFELLKVLRGHQS  172 (942)
T ss_pred             EEEEecccceEEEEccccceeeeeeecccc
Confidence            999999999999999999999999988753

>KOG0292|consensus

Probab=99.47  E-value=7.1e-14  Score=87.72  Aligned_cols=83  Identities=19%  Similarity=0.358  Sum_probs=77.0

Q ss_pred             ccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCCC
Q psy14456          3 DGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTR   81 (93)
Q Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~   81 (93)
                      +++|..++|+|.    ..+++++= .+|.|.+||.+-+.++..|..|.++|..+ |+|...++++|+.|..|++|++.+.
T Consensus         9 SsRvKglsFHP~----rPwILtsl-HsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r   83 (1202)
T KOG0292|consen    9 SSRVKGLSFHPK----RPWILTSL-HSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR   83 (1202)
T ss_pred             cccccceecCCC----CCEEEEee-cCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccc
Confidence            468999999998    78888865 79999999999999999999999999999 9999999999999999999999999


Q ss_pred             ceeeEecCc
Q psy14456         82 GCTNVLTPI   90 (93)
Q Consensus        82 ~~~~~~~~~   90 (93)
                      .|+.++.+|
T Consensus        84 rclftL~GH   92 (1202)
T KOG0292|consen   84 RCLFTLLGH   92 (1202)
T ss_pred             eehhhhccc
Confidence            999888776

>KOG0306|consensus

Probab=99.47  E-value=1.9e-13  Score=84.43  Aligned_cols=85  Identities=19%  Similarity=0.245  Sum_probs=78.7

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      |.-+|.|++.+|+    ++.+++++ .|..|++|-++-|.|-+.+.+|...|.++ |-|+...+.+++.|+.++-||-.+
T Consensus       549 HkLPV~smDIS~D----SklivTgS-ADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~k  623 (888)
T KOG0306|consen  549 HKLPVLSMDISPD----SKLIVTGS-ADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEK  623 (888)
T ss_pred             cccceeEEeccCC----cCeEEecc-CCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhh
Confidence            6779999999999    78888877 59999999999999999999999999999 999999999999999999999999


Q ss_pred             CceeeEecCcc
Q psy14456         81 RGCTNVLTPIT   91 (93)
Q Consensus        81 ~~~~~~~~~~~   91 (93)
                      -.+++.+.+|.
T Consensus       624 Fe~iq~L~~H~  634 (888)
T KOG0306|consen  624 FEEIQKLDGHH  634 (888)
T ss_pred             hhhheeeccch
Confidence            98998888763

>KOG0294|consensus

Probab=99.46  E-value=1.2e-12  Score=74.19  Aligned_cols=83  Identities=29%  Similarity=0.428  Sum_probs=71.8

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      |++.|+++.|.++-+  .+.++++. .||.|.+|+.....++..+++|.+.|+.+ .+|.+.+-++.+.|+.++.||+-.
T Consensus        82 HagsitaL~F~~~~S--~shLlS~s-dDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~  158 (362)
T KOG0294|consen   82 HAGSITALKFYPPLS--KSHLLSGS-DDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVR  158 (362)
T ss_pred             cccceEEEEecCCcc--hhheeeec-CCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhc
Confidence            789999999998721  12567765 69999999999999999999999999999 999999999999999999999998


Q ss_pred             CceeeEe
Q psy14456         81 RGCTNVL   87 (93)
Q Consensus        81 ~~~~~~~   87 (93)
                      |......
T Consensus       159 Gr~a~v~  165 (362)
T KOG0294|consen  159 GRVAFVL  165 (362)
T ss_pred             Cccceee
Confidence            8755544

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.45  E-value=4.4e-12  Score=80.65  Aligned_cols=85  Identities=19%  Similarity=0.328  Sum_probs=68.2

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-Eec-CCCEEEEecCCCcEEEEeCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNW-GGATVLSGSHDRTVRFWDLR   79 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~-~~~~~~s~~~~~~i~~~d~~   79 (93)
                      |++.|++++|+|..   +..+++++ .|+.|++||++++..+..+..+ ..+.++ |.+ ++..+++++.|+.+++||++
T Consensus       574 H~~~V~~l~~~p~~---~~~L~Sgs-~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~  648 (793)
T PLN00181        574 HEKRVWSIDYSSAD---PTLLASGS-DDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLR  648 (793)
T ss_pred             CCCCEEEEEEcCCC---CCEEEEEc-CCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECC
Confidence            78899999999742   56777776 5999999999999888877654 567788 854 78999999999999999998


Q ss_pred             CCc-eeeEecCcc
Q psy14456         80 TRG-CTNVLTPIT   91 (93)
Q Consensus        80 ~~~-~~~~~~~~~   91 (93)
                      +.. .+..+.+|.
T Consensus       649 ~~~~~~~~~~~h~  661 (793)
T PLN00181        649 NPKLPLCTMIGHS  661 (793)
T ss_pred             CCCccceEecCCC
Confidence            765 455555553

>KOG0645|consensus

Probab=99.45  E-value=3.6e-12  Score=71.13  Aligned_cols=85  Identities=16%  Similarity=0.285  Sum_probs=72.4

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCC---ceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEe
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATG---QAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWD   77 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~---~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d   77 (93)
                      |...|.|++|+++    +.+|++++ +|+.|.+|.+..+   .+...++.|...|..+ |+|...+|++++.|.+|++|.
T Consensus       104 HEnEVK~Vaws~s----G~~LATCS-RDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~  178 (312)
T KOG0645|consen  104 HENEVKCVAWSAS----GNYLATCS-RDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYR  178 (312)
T ss_pred             cccceeEEEEcCC----CCEEEEee-CCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEe
Confidence            7889999999999    78888876 8999999998754   4567788999999988 999999999999999999997


Q ss_pred             CCC---CceeeEecCcc
Q psy14456         78 LRT---RGCTNVLTPIT   91 (93)
Q Consensus        78 ~~~---~~~~~~~~~~~   91 (93)
                      -..   -.+.+++.+|+
T Consensus       179 ~~~dddW~c~~tl~g~~  195 (312)
T KOG0645|consen  179 DEDDDDWECVQTLDGHE  195 (312)
T ss_pred             ecCCCCeeEEEEecCcc
Confidence            662   25777777764

>KOG0305|consensus

Probab=99.45  E-value=6.3e-13  Score=79.73  Aligned_cols=82  Identities=22%  Similarity=0.391  Sum_probs=72.8

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-Eec-CCCEEEEec--CCCcEEEEe
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNW-GGATVLSGS--HDRTVRFWD   77 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~-~~~~~~s~~--~~~~i~~~d   77 (93)
                      |+..|..+.|+++    +..++++|+ |+.+.+||......+..+..|.+.|..+ |+| ...+|++|+  .|+.|++||
T Consensus       300 H~qeVCgLkws~d----~~~lASGgn-DN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn  374 (484)
T KOG0305|consen  300 HRQEVCGLKWSPD----GNQLASGGN-DNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWN  374 (484)
T ss_pred             ccceeeeeEECCC----CCeeccCCC-ccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEE
Confidence            8899999999999    788899886 9999999998888889999999999999 999 677888775  789999999


Q ss_pred             CCCCceeeEec
Q psy14456         78 LRTRGCTNVLT   88 (93)
Q Consensus        78 ~~~~~~~~~~~   88 (93)
                      ..++..+..+.
T Consensus       375 ~~~g~~i~~vd  385 (484)
T KOG0305|consen  375 TNTGARIDSVD  385 (484)
T ss_pred             cCCCcEecccc
Confidence            99988776654

>KOG0303|consensus

Probab=99.45  E-value=3.3e-13  Score=78.43  Aligned_cols=83  Identities=24%  Similarity=0.347  Sum_probs=71.7

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCC-------ceeEEeeccccceEEE-Eec-CCCEEEEecCCCc
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATG-------QAFQALSGHSGHVLSL-YNW-GGATVLSGSHDRT   72 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~-------~~~~~~~~~~~~v~~~-~~~-~~~~~~s~~~~~~   72 (93)
                      |+++|..++|.|.    ....+++|++|.+|.+|++..+       ..+..+.+|...|--+ |+| -.+.|++++.|..
T Consensus        80 Ht~~vLDi~w~Pf----nD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~  155 (472)
T KOG0303|consen   80 HTAPVLDIDWCPF----NDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT  155 (472)
T ss_pred             ccccccccccCcc----CCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence            8999999999998    6777888889999999998643       4567888999999988 999 4678889999999


Q ss_pred             EEEEeCCCCceeeEec
Q psy14456         73 VRFWDLRTRGCTNVLT   88 (93)
Q Consensus        73 i~~~d~~~~~~~~~~~   88 (93)
                      +.+||+.+|..+..+.
T Consensus       156 v~iWnv~tgeali~l~  171 (472)
T KOG0303|consen  156 VSIWNVGTGEALITLD  171 (472)
T ss_pred             EEEEeccCCceeeecC
Confidence            9999999998766654

>KOG0649|consensus

Probab=99.44  E-value=3e-12  Score=70.86  Aligned_cols=80  Identities=30%  Similarity=0.524  Sum_probs=67.8

Q ss_pred             ceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCCCce
Q psy14456          5 TVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRGC   83 (93)
Q Consensus         5 ~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~~   83 (93)
                      .|+++-..|.+   ++.+.++|  |+.+.-||+++|+....+.+|++.+.++ --.....+++|+.||++++||.+++++
T Consensus       116 eINam~ldP~e---nSi~~AgG--D~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~  190 (325)
T KOG0649|consen  116 EINAMWLDPSE---NSILFAGG--DGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKH  190 (325)
T ss_pred             ccceeEeccCC---CcEEEecC--CeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccce
Confidence            47788888874   55566654  9999999999999999999999999998 544556788999999999999999999


Q ss_pred             eeEecC
Q psy14456         84 TNVLTP   89 (93)
Q Consensus        84 ~~~~~~   89 (93)
                      .+++..
T Consensus       191 v~~ie~  196 (325)
T KOG0649|consen  191 VSMIEP  196 (325)
T ss_pred             eEEecc
Confidence            988865

>KOG0639|consensus

Probab=99.43  E-value=1.3e-13  Score=82.28  Aligned_cols=75  Identities=24%  Similarity=0.347  Sum_probs=67.4

Q ss_pred             eeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCCCcee
Q psy14456          6 VRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRGCT   84 (93)
Q Consensus         6 v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~~~   84 (93)
                      .+.++.+|+    .+..+++.+ ||.|.|||+.....+..|++|.+.+.|| .+.+|..+-||+.|.+++.||++++..+
T Consensus       512 CyALa~spD----akvcFsccs-dGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrql  586 (705)
T KOG0639|consen  512 CYALAISPD----AKVCFSCCS-DGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQL  586 (705)
T ss_pred             hhhhhcCCc----cceeeeecc-CCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhh
Confidence            456788888    788888875 9999999999999999999999999999 9999999999999999999999987654


Q ss_pred             e
Q psy14456         85 N   85 (93)
Q Consensus        85 ~   85 (93)
                      +
T Consensus       587 q  587 (705)
T KOG0639|consen  587 Q  587 (705)
T ss_pred             h
Confidence            3

>KOG0278|consensus

Probab=99.43  E-value=1.2e-12  Score=72.54  Aligned_cols=73  Identities=29%  Similarity=0.537  Sum_probs=63.9

Q ss_pred             ceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEe-eccccceEEE-EecCCCEEEEecCCCcEEEEeCCCCc
Q psy14456          5 TVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQAL-SGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRG   82 (93)
Q Consensus         5 ~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~-~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~   82 (93)
                      .|.+.+.+|+    ...++++| +|..+..||..++..+..+ ++|.++|.|+ |+|+|.+.++|+.||+|++|....++
T Consensus       226 nV~SASL~P~----k~~fVaGg-ed~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~  300 (334)
T KOG0278|consen  226 NVESASLHPK----KEFFVAGG-EDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK  300 (334)
T ss_pred             ccccccccCC----CceEEecC-cceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence            4666677777    66777777 6999999999999998886 8999999999 99999999999999999999987654

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.43  E-value=6.1e-12  Score=69.96  Aligned_cols=84  Identities=38%  Similarity=0.603  Sum_probs=72.2

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      |.+.+.++.|+|+    ++.+++++. ++.+.+||.+.+..+..+..|...+.++ |++++.++++++.++.+.+||+.+
T Consensus       176 ~~~~i~~~~~~~~----~~~l~~~~~-~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~  250 (289)
T cd00200         176 HTGEVNSVAFSPD----GEKLLSSSS-DGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRT  250 (289)
T ss_pred             CccccceEEECCC----cCEEEEecC-CCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCC
Confidence            5668999999998    667777774 9999999999988888887888899999 999988888888899999999998


Q ss_pred             CceeeEecCc
Q psy14456         81 RGCTNVLTPI   90 (93)
Q Consensus        81 ~~~~~~~~~~   90 (93)
                      +.....+..+
T Consensus       251 ~~~~~~~~~~  260 (289)
T cd00200         251 GECVQTLSGH  260 (289)
T ss_pred             ceeEEEcccc
Confidence            8877777654

>KOG1407|consensus

Probab=99.42  E-value=1.4e-12  Score=72.51  Aligned_cols=83  Identities=17%  Similarity=0.174  Sum_probs=74.0

Q ss_pred             CCccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCC
Q psy14456          1 MHDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLR   79 (93)
Q Consensus         1 ~h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~   79 (93)
                      .|+....|+.|+|+    ++++++++ .|-.+.+||++..-|+..+.-+.-+|..+ |+.++++|++++.|..|-+=+++
T Consensus       187 AH~snCicI~f~p~----GryfA~Gs-ADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~ve  261 (313)
T KOG1407|consen  187 AHPSNCICIEFDPD----GRYFATGS-ADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVE  261 (313)
T ss_pred             cCCcceEEEEECCC----CceEeecc-ccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecc
Confidence            38888999999999    78888876 59999999999999999998899999999 99999999999999999988888


Q ss_pred             CCceeeEec
Q psy14456         80 TRGCTNVLT   88 (93)
Q Consensus        80 ~~~~~~~~~   88 (93)
                      +|..+..+.
T Consensus       262 tGd~~~eI~  270 (313)
T KOG1407|consen  262 TGDRVWEIP  270 (313)
T ss_pred             cCCeEEEee
Confidence            887665553

>KOG2394|consensus

Probab=99.42  E-value=6.9e-13  Score=79.55  Aligned_cols=83  Identities=18%  Similarity=0.332  Sum_probs=72.8

Q ss_pred             ccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCCC
Q psy14456          3 DGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTR   81 (93)
Q Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~   81 (93)
                      ++.|...+|+|+    ++.+++.+ +||.++|+|..+.+.+..++.+-+...|+ |+||+.++++|+.|-.+.||.+..+
T Consensus       290 ~g~in~f~FS~D----G~~LA~VS-qDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~er  364 (636)
T KOG2394|consen  290 EGSINEFAFSPD----GKYLATVS-QDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEER  364 (636)
T ss_pred             cccccceeEcCC----CceEEEEe-cCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccc
Confidence            467888999998    88888887 89999999999999888888889999999 9999999999999999999999887


Q ss_pred             ceeeEecCc
Q psy14456         82 GCTNVLTPI   90 (93)
Q Consensus        82 ~~~~~~~~~   90 (93)
                      +.+..=.+|
T Consensus       365 RVVARGqGH  373 (636)
T KOG2394|consen  365 RVVARGQGH  373 (636)
T ss_pred             eEEEecccc
Confidence            765544433

>KOG0296|consensus

Probab=99.42  E-value=1.4e-11  Score=71.03  Aligned_cols=87  Identities=24%  Similarity=0.379  Sum_probs=76.3

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      |...|+++.|+-+    +.++++++ .+|.|++|...++.....+..--+.+.-+ |+|.+..++.|+.|+.+-+|.+.+
T Consensus       105 HKDSVt~~~Fshd----gtlLATGd-msG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~  179 (399)
T KOG0296|consen  105 HKDSVTCCSFSHD----GTLLATGD-MSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPS  179 (399)
T ss_pred             CCCceEEEEEccC----ceEEEecC-CCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCC
Confidence            7899999999998    78888877 59999999999998888876556677778 999999999999999999999999


Q ss_pred             CceeeEecCccCC
Q psy14456         81 RGCTNVLTPITVP   93 (93)
Q Consensus        81 ~~~~~~~~~~~~~   93 (93)
                      +...+.+.+|..|
T Consensus       180 ~~~~kv~~Gh~~~  192 (399)
T KOG0296|consen  180 QALCKVMSGHNSP  192 (399)
T ss_pred             cceeeEecCCCCC
Confidence            8888888887654

>KOG0299|consensus

Probab=99.41  E-value=7e-13  Score=77.97  Aligned_cols=85  Identities=27%  Similarity=0.470  Sum_probs=76.4

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      |...+.+++.+++    +++++++| +|..+.||+.++.+.++.+.+|.+.|.++ |-....-+++++.|+.+++|++..
T Consensus       201 h~keil~~avS~D----gkylatgg-~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~  275 (479)
T KOG0299|consen  201 HVKEILTLAVSSD----GKYLATGG-RDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQ  275 (479)
T ss_pred             ccceeEEEEEcCC----CcEEEecC-CCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhH
Confidence            6788999999999    89999988 79999999999999999999999999999 888888899999999999999988


Q ss_pred             CceeeEecCcc
Q psy14456         81 RGCTNVLTPIT   91 (93)
Q Consensus        81 ~~~~~~~~~~~   91 (93)
                      ...+.++++|.
T Consensus       276 ~s~vetlyGHq  286 (479)
T KOG0299|consen  276 LSYVETLYGHQ  286 (479)
T ss_pred             hHHHHHHhCCc
Confidence            77666666653

>KOG0302|consensus

Probab=99.41  E-value=2.3e-12  Score=74.56  Aligned_cols=75  Identities=23%  Similarity=0.448  Sum_probs=62.3

Q ss_pred             CCccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCC---CCceeEEeeccccceEEE-Eec-CCCEEEEecCCCcEEE
Q psy14456          1 MHDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCA---TGQAFQALSGHSGHVLSL-YNW-GGATVLSGSHDRTVRF   75 (93)
Q Consensus         1 ~h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~---~~~~~~~~~~~~~~v~~~-~~~-~~~~~~s~~~~~~i~~   75 (93)
                      .|.+-|+.++|+..    ..++++++ .||.+++||++   .++++..++-|+.+|+++ |+| +...++.++.|.++.+
T Consensus       300 Ah~sDVNVISWnr~----~~lLasG~-DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Qiti  374 (440)
T KOG0302|consen  300 AHNSDVNVISWNRR----EPLLASGG-DDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITI  374 (440)
T ss_pred             ccCCceeeEEccCC----cceeeecC-CCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEE
Confidence            37788999999887    45555555 69999999987   456788999999999999 999 5667888889999999


Q ss_pred             EeCCC
Q psy14456         76 WDLRT   80 (93)
Q Consensus        76 ~d~~~   80 (93)
                      ||+..
T Consensus       375 WDlsv  379 (440)
T KOG0302|consen  375 WDLSV  379 (440)
T ss_pred             EEeec
Confidence            99864

>KOG1539|consensus

Probab=99.41  E-value=2.4e-12  Score=80.27  Aligned_cols=83  Identities=28%  Similarity=0.421  Sum_probs=69.4

Q ss_pred             CCccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCC----------------------------------------
Q psy14456          1 MHDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATG----------------------------------------   40 (93)
Q Consensus         1 ~h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~----------------------------------------   40 (93)
                      .|.++|+.++...-    ++.++++|. +|.+.+||....                                        
T Consensus       491 ah~~~V~gla~D~~----n~~~vsa~~-~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t  565 (910)
T KOG1539|consen  491 AHKGEVTGLAVDGT----NRLLVSAGA-DGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVT  565 (910)
T ss_pred             cccCceeEEEecCC----CceEEEccC-cceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchh
Confidence            37889999998766    677888885 999999987532                                        


Q ss_pred             -ceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCCCceeeEec
Q psy14456         41 -QAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRGCTNVLT   88 (93)
Q Consensus        41 -~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~   88 (93)
                       +.+..+.+|.+.++++ |+|+++++++++.|++|++||+.++.++-.+.
T Consensus       566 ~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~  615 (910)
T KOG1539|consen  566 RKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL  615 (910)
T ss_pred             hhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe
Confidence             2345667899999999 99999999999999999999999998776664

>KOG1445|consensus

Probab=99.41  E-value=3.3e-13  Score=82.66  Aligned_cols=78  Identities=21%  Similarity=0.394  Sum_probs=69.2

Q ss_pred             CCccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCC
Q psy14456          1 MHDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLR   79 (93)
Q Consensus         1 ~h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~   79 (93)
                      +|...|+.+.|+|-.   .+.++++ +.|-+|++||+..+.....+.+|++.|..+ |+|+|+.+++.+.|+.+++++.+
T Consensus       675 ~h~eKI~slRfHPLA---advLa~a-syd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Pr  750 (1012)
T KOG1445|consen  675 IHGEKITSLRFHPLA---ADVLAVA-SYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPR  750 (1012)
T ss_pred             cccceEEEEEecchh---hhHhhhh-hccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCC
Confidence            588999999999973   4445554 469999999999999999999999999999 99999999999999999999988


Q ss_pred             CCc
Q psy14456         80 TRG   82 (93)
Q Consensus        80 ~~~   82 (93)
                      ++.
T Consensus       751 s~e  753 (1012)
T KOG1445|consen  751 SRE  753 (1012)
T ss_pred             CCC
Confidence            764

>KOG0973|consensus

Probab=99.41  E-value=2.1e-12  Score=81.73  Aligned_cols=83  Identities=30%  Similarity=0.422  Sum_probs=73.8

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      |.+.|.++.|+|+    ..++++++. |++|.+|+..+...+..+.+|.+.|..+ |.|-|+++++.+.|+++++|....
T Consensus       128 H~~DV~Dv~Wsp~----~~~lvS~s~-DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~d  202 (942)
T KOG0973|consen  128 HDSDVLDVNWSPD----DSLLVSVSL-DNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSD  202 (942)
T ss_pred             CCCccceeccCCC----ccEEEEecc-cceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEccc
Confidence            7889999999998    788888875 9999999999999999999999999999 999999999999999999999776


Q ss_pred             CceeeEecC
Q psy14456         81 RGCTNVLTP   89 (93)
Q Consensus        81 ~~~~~~~~~   89 (93)
                      -...+.+..
T Consensus       203 w~i~k~It~  211 (942)
T KOG0973|consen  203 WGIEKSITK  211 (942)
T ss_pred             ceeeEeecc
Confidence            555555443

>KOG1034|consensus

Probab=99.40  E-value=4.9e-12  Score=72.21  Aligned_cols=87  Identities=29%  Similarity=0.487  Sum_probs=74.8

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-Eec-CCCEEEEecCCCcEEEEeCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNW-GGATVLSGSHDRTVRFWDLR   79 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~-~~~~~~s~~~~~~i~~~d~~   79 (93)
                      |....+.++|+-+......+++++| .-|.|++.|+.++++...+.+|...|+.+ +.| +.+++++++.|..+++|+++
T Consensus        88 ~~Esfytcsw~yd~~~~~p~la~~G-~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~  166 (385)
T KOG1034|consen   88 HDESFYTCSWSYDSNTGNPFLAAGG-YLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ  166 (385)
T ss_pred             CCcceEEEEEEecCCCCCeeEEeec-ceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence            4456778888877543355677777 69999999999999999999999999999 999 57899999999999999999


Q ss_pred             CCceeeEecC
Q psy14456         80 TRGCTNVLTP   89 (93)
Q Consensus        80 ~~~~~~~~~~   89 (93)
                      +..|+..|.+
T Consensus       167 ~~~Cv~VfGG  176 (385)
T KOG1034|consen  167 TDVCVAVFGG  176 (385)
T ss_pred             CCeEEEEecc
Confidence            9999998865

>KOG0289|consensus

Probab=99.39  E-value=8.7e-12  Score=73.32  Aligned_cols=87  Identities=21%  Similarity=0.345  Sum_probs=75.5

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccc--cceEEE-EecCCCEEEEecCCCcEEEEeC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHS--GHVLSL-YNWGGATVLSGSHDRTVRFWDL   78 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~--~~v~~~-~~~~~~~~~s~~~~~~i~~~d~   78 (93)
                      |.++|+.+..+|.    +.+++++.+ |+...+.|.+++..+.......  -.+.+. |+|||..+.+|..|+.+++||+
T Consensus       302 h~~~V~~ls~h~t----geYllsAs~-d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdl  376 (506)
T KOG0289|consen  302 HEEPVTGLSLHPT----GEYLLSASN-DGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDL  376 (506)
T ss_pred             ccccceeeeeccC----CcEEEEecC-CceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEc
Confidence            7899999999999    899999875 9999999999999876654322  246788 9999999999999999999999


Q ss_pred             CCCceeeEecCccCC
Q psy14456         79 RTRGCTNVLTPITVP   93 (93)
Q Consensus        79 ~~~~~~~~~~~~~~~   93 (93)
                      .++.....|.+|+.|
T Consensus       377 ks~~~~a~Fpght~~  391 (506)
T KOG0289|consen  377 KSQTNVAKFPGHTGP  391 (506)
T ss_pred             CCccccccCCCCCCc
Confidence            999999999888765

>KOG0270|consensus

Probab=99.39  E-value=7.8e-13  Score=77.51  Aligned_cols=75  Identities=25%  Similarity=0.361  Sum_probs=66.5

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-Eec-CCCEEEEecCCCcEEEEeCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNW-GGATVLSGSHDRTVRFWDLR   79 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~-~~~~~~s~~~~~~i~~~d~~   79 (93)
                      |+..|..++|...    .+.++++|+.|.+|.+||+.++++...+..|...|.++ |++ .+..+++|+.|+++.+.|.|
T Consensus       242 HTdavl~Ls~n~~----~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R  317 (463)
T KOG0270|consen  242 HTDAVLALSWNRN----FRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCR  317 (463)
T ss_pred             chHHHHHHHhccc----cceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeecc
Confidence            7788888988877    56666667789999999999999999999899999999 988 67899999999999999999


Q ss_pred             C
Q psy14456         80 T   80 (93)
Q Consensus        80 ~   80 (93)
                      .
T Consensus       318 ~  318 (463)
T KOG0270|consen  318 D  318 (463)
T ss_pred             C
Confidence            3

>KOG0267|consensus

Probab=99.39  E-value=1.9e-13  Score=84.04  Aligned_cols=85  Identities=26%  Similarity=0.520  Sum_probs=75.2

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      |.++|.++.|++.    .. ++++|+.+|.|++||++....+.++.+|...+..+ |+|.+.+.++++.|..+.+||++.
T Consensus        69 hespIeSl~f~~~----E~-LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk  143 (825)
T KOG0267|consen   69 HESPIESLTFDTS----ER-LLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRK  143 (825)
T ss_pred             cCCcceeeecCcc----hh-hhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhc
Confidence            8899999999987    34 44445579999999999999999999999999999 999999999999999999999998


Q ss_pred             CceeeEecCcc
Q psy14456         81 RGCTNVLTPIT   91 (93)
Q Consensus        81 ~~~~~~~~~~~   91 (93)
                      ..|...+..|+
T Consensus       144 ~Gc~~~~~s~~  154 (825)
T KOG0267|consen  144 KGCSHTYKSHT  154 (825)
T ss_pred             cCceeeecCCc
Confidence            88888887653

>KOG0640|consensus

Probab=99.39  E-value=2.2e-12  Score=73.49  Aligned_cols=81  Identities=22%  Similarity=0.459  Sum_probs=70.2

Q ss_pred             ccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEe---eccccceEEE-EecCCCEEEEecCCCcEEEEeC
Q psy14456          3 DGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQAL---SGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDL   78 (93)
Q Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~---~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~   78 (93)
                      ..+|.+++|+|.    +.+++.+. +...+++||+++-++....   ..|++.|+++ +++.+++.++++.||.|++||-
T Consensus       216 ~~~vrsiSfHPs----GefllvgT-dHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDG  290 (430)
T KOG0640|consen  216 TEPVRSISFHPS----GEFLLVGT-DHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDG  290 (430)
T ss_pred             cceeeeEeecCC----CceEEEec-CCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeecc
Confidence            357999999998    78777754 6999999999999886543   4688999999 9999999999999999999999


Q ss_pred             CCCceeeEec
Q psy14456         79 RTRGCTNVLT   88 (93)
Q Consensus        79 ~~~~~~~~~~   88 (93)
                      -++.|+.+|.
T Consensus       291 VS~rCv~t~~  300 (430)
T KOG0640|consen  291 VSNRCVRTIG  300 (430)
T ss_pred             ccHHHHHHHH
Confidence            9888887774

>KOG1446|consensus

Probab=99.39  E-value=2.1e-11  Score=68.98  Aligned_cols=80  Identities=35%  Similarity=0.591  Sum_probs=66.4

Q ss_pred             ccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCC------------------------------------------
Q psy14456          3 DGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATG------------------------------------------   40 (93)
Q Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~------------------------------------------   40 (93)
                      .+.|+++.|+++    +..++++. .|-.+++||...+                                          
T Consensus        14 ~~~i~sl~fs~~----G~~litss-~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~   88 (311)
T KOG1446|consen   14 NGKINSLDFSDD----GLLLITSS-EDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLH   88 (311)
T ss_pred             CCceeEEEecCC----CCEEEEec-CCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEee
Confidence            467899999998    77888865 5889999987533                                          


Q ss_pred             --ceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCCCceeeEe
Q psy14456         41 --QAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRGCTNVL   87 (93)
Q Consensus        41 --~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~   87 (93)
                        +.+.-+.||...|..+ .+|.+..+++++.|+++++||++...|+-.+
T Consensus        89 dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l  138 (311)
T KOG1446|consen   89 DNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLL  138 (311)
T ss_pred             cCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEE
Confidence              3566778999999999 9998899999999999999999977665544

>KOG0772|consensus

Probab=99.38  E-value=9.3e-13  Score=78.77  Aligned_cols=81  Identities=26%  Similarity=0.407  Sum_probs=63.5

Q ss_pred             ceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCc--e-eEEeecccc--ceEEE-EecCCCEEEEecCCCcEEEEeC
Q psy14456          5 TVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQ--A-FQALSGHSG--HVLSL-YNWGGATVLSGSHDRTVRFWDL   78 (93)
Q Consensus         5 ~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~--~-~~~~~~~~~--~v~~~-~~~~~~~~~s~~~~~~i~~~d~   78 (93)
                      +++.++|+|+    +.+|++++ .||.|.+|+....-  . .+.-.+|..  .|.++ |+++++.|++.+.|..+++||+
T Consensus       319 ~~tsC~~nrd----g~~iAagc-~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDL  393 (641)
T KOG0772|consen  319 PVTSCAWNRD----GKLIAAGC-LDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDL  393 (641)
T ss_pred             CceeeecCCC----cchhhhcc-cCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeec
Confidence            5789999999    77766655 69999999975432  2 233356776  89999 9999999999999999999999


Q ss_pred             CCC-ceeeEecCc
Q psy14456         79 RTR-GCTNVLTPI   90 (93)
Q Consensus        79 ~~~-~~~~~~~~~   90 (93)
                      ++. +++.+..+.
T Consensus       394 rq~kkpL~~~tgL  406 (641)
T KOG0772|consen  394 RQFKKPLNVRTGL  406 (641)
T ss_pred             cccccchhhhcCC
Confidence            974 456655544

>KOG0318|consensus

Probab=99.38  E-value=7e-12  Score=75.12  Aligned_cols=77  Identities=19%  Similarity=0.334  Sum_probs=66.7

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCcee-EEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAF-QALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLR   79 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~-~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~   79 (93)
                      |+++|++++|+|+    +.+++++. ..+.+.+||..+.+.. ..+.=|++.|.++ |+|+...++||+.|-.+.+|++.
T Consensus       486 h~a~iT~vaySpd----~~yla~~D-a~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~  560 (603)
T KOG0318|consen  486 HRAAITDVAYSPD----GAYLAAGD-ASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVK  560 (603)
T ss_pred             ccCCceEEEECCC----CcEEEEec-cCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEcc
Confidence            7899999999999    78888776 5999999999988763 2334499999999 99999999999999999999998


Q ss_pred             CCce
Q psy14456         80 TRGC   83 (93)
Q Consensus        80 ~~~~   83 (93)
                      ....
T Consensus       561 kP~~  564 (603)
T KOG0318|consen  561 KPAK  564 (603)
T ss_pred             Chhh
Confidence            7543

>KOG1009|consensus

Probab=99.38  E-value=5.3e-12  Score=73.51  Aligned_cols=85  Identities=28%  Similarity=0.442  Sum_probs=72.9

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCC--------C--------CceeEEeeccccceEEE-EecCCCEE
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCA--------T--------GQAFQALSGHSGHVLSL-YNWGGATV   64 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~--------~--------~~~~~~~~~~~~~v~~~-~~~~~~~~   64 (93)
                      |+.+|+++.|+|+    ++++++++ .++.+.+|...        +        ......+.+|...+..+ |+++++.+
T Consensus        64 H~~aVN~vRf~p~----gelLASg~-D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l  138 (434)
T KOG1009|consen   64 HTRAVNVVRFSPD----GELLASGG-DGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFL  138 (434)
T ss_pred             CcceeEEEEEcCC----cCeeeecC-CCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCcee
Confidence            8899999999999    78888887 59999999765        2        12345667899999999 99999999


Q ss_pred             EEecCCCcEEEEeCCCCceeeEecCcc
Q psy14456         65 LSGSHDRTVRFWDLRTRGCTNVLTPIT   91 (93)
Q Consensus        65 ~s~~~~~~i~~~d~~~~~~~~~~~~~~   91 (93)
                      ++++.|..+++||+..|+....+..|.
T Consensus       139 ~s~s~dns~~l~Dv~~G~l~~~~~dh~  165 (434)
T KOG1009|consen  139 VSGSVDNSVRLWDVHAGQLLAILDDHE  165 (434)
T ss_pred             eeeeccceEEEEEeccceeEeeccccc
Confidence            999999999999999999888877653

>KOG0293|consensus

Probab=99.37  E-value=1.7e-12  Score=76.04  Aligned_cols=62  Identities=31%  Similarity=0.504  Sum_probs=56.7

Q ss_pred             cceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-Eec-CCCEEEEecCCCcEEEEeCCC
Q psy14456         19 SSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNW-GGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus        19 ~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~-~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      .+.++++|++|+.|++|+..++.++..+.||...++++ |+| +...+++++.|++|++|....
T Consensus       451 ~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  451 NDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             CcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence            45788889999999999999999999999999999999 999 678899999999999997653

>KOG0269|consensus

Probab=99.35  E-value=4.7e-12  Score=78.47  Aligned_cols=86  Identities=20%  Similarity=0.229  Sum_probs=64.9

Q ss_pred             CCccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEee-ccccceEEE-EecC-CCEEEEec--CCCcEEE
Q psy14456          1 MHDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALS-GHSGHVLSL-YNWG-GATVLSGS--HDRTVRF   75 (93)
Q Consensus         1 ~h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~-~~~~~v~~~-~~~~-~~~~~s~~--~~~~i~~   75 (93)
                      .|.++|.|+.|+|+    +.+++++| +|+++++|+..+.+...... .-..++..+ |-|. ...|++++  .|..|++
T Consensus       218 AH~GpV~c~nwhPn----r~~lATGG-RDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~V  292 (839)
T KOG0269|consen  218 AHNGPVLCLNWHPN----REWLATGG-RDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHV  292 (839)
T ss_pred             cccCceEEEeecCC----CceeeecC-CCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEE
Confidence            48999999999998    88999988 89999999998665433222 235678888 9884 45677776  5789999


Q ss_pred             EeCCCC-ceeeEecCcc
Q psy14456         76 WDLRTR-GCTNVLTPIT   91 (93)
Q Consensus        76 ~d~~~~-~~~~~~~~~~   91 (93)
                      ||++.. -+..+|..|+
T Consensus       293 WDvrRPYIP~~t~~eH~  309 (839)
T KOG0269|consen  293 WDVRRPYIPYATFLEHT  309 (839)
T ss_pred             EeeccccccceeeeccC
Confidence            999853 4455555543

>KOG0293|consensus

Probab=99.35  E-value=7.1e-12  Score=73.48  Aligned_cols=82  Identities=20%  Similarity=0.269  Sum_probs=71.5

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCC---ceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEe
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATG---QAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWD   77 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~---~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d   77 (93)
                      |+..|.-+.|+++    +++++++. .|.+..+|.+...   +..+++.+|..+|..+ |+|+.+++++|+.+..+.+||
T Consensus       223 htdEVWfl~FS~n----GkyLAsaS-kD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwD  297 (519)
T KOG0293|consen  223 HTDEVWFLQFSHN----GKYLASAS-KDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWD  297 (519)
T ss_pred             CCCcEEEEEEcCC----CeeEeecc-CCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeecc
Confidence            7899999999998    78888876 6999999987544   3467889999999999 999999999999999999999


Q ss_pred             CCCCceeeEec
Q psy14456         78 LRTRGCTNVLT   88 (93)
Q Consensus        78 ~~~~~~~~~~~   88 (93)
                      ..+|.....+.
T Consensus       298 v~tgd~~~~y~  308 (519)
T KOG0293|consen  298 VDTGDLRHLYP  308 (519)
T ss_pred             CCcchhhhhcc
Confidence            99998776654

>KOG0305|consensus

Probab=99.33  E-value=5.7e-12  Score=75.71  Aligned_cols=84  Identities=29%  Similarity=0.379  Sum_probs=73.4

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEE-eeccccceEEE-EecCCCEEEEecCCCcEEEEeCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQA-LSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLR   79 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~-~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~   79 (93)
                      |.++|.+++|.       ..++++|++++.|..+|++..+.... +.+|...|..+ |++++..+++|+.|..+.+||..
T Consensus       259 h~~rvg~laW~-------~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~  331 (484)
T KOG0305|consen  259 HASRVGSLAWN-------SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGL  331 (484)
T ss_pred             cCceeEEEecc-------CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCC
Confidence            78899999996       34677788999999999998766544 88999999999 99999999999999999999998


Q ss_pred             CCceeeEecCccC
Q psy14456         80 TRGCTNVLTPITV   92 (93)
Q Consensus        80 ~~~~~~~~~~~~~   92 (93)
                      .......+..|..
T Consensus       332 ~~~p~~~~~~H~a  344 (484)
T KOG0305|consen  332 SPEPKFTFTEHTA  344 (484)
T ss_pred             CccccEEEeccce
Confidence            8888888887754

>KOG0290|consensus

Probab=99.33  E-value=1.5e-11  Score=69.48  Aligned_cols=76  Identities=21%  Similarity=0.389  Sum_probs=64.1

Q ss_pred             CCccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCC----------------------------------------
Q psy14456          1 MHDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATG----------------------------------------   40 (93)
Q Consensus         1 ~h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~----------------------------------------   40 (93)
                      .|...|.+++|..++   .+.|++.| .||.+|++|++..                                        
T Consensus       194 AHDKEV~DIaf~~~s---~~~FASvg-aDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~  269 (364)
T KOG0290|consen  194 AHDKEVYDIAFLKGS---RDVFASVG-ADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVV  269 (364)
T ss_pred             ecCcceeEEEeccCc---cceEEEec-CCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEE
Confidence            378899999999864   67788888 5999999998632                                        


Q ss_pred             --------ceeEEeeccccceEEE-Eec-CCCEEEEecCCCcEEEEeCCC
Q psy14456         41 --------QAFQALSGHSGHVLSL-YNW-GGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus        41 --------~~~~~~~~~~~~v~~~-~~~-~~~~~~s~~~~~~i~~~d~~~   80 (93)
                              ..+..+.+|.+.|+.+ |.| ....+++++.|.+..+||+.+
T Consensus       270 iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q  319 (364)
T KOG0290|consen  270 ILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ  319 (364)
T ss_pred             EEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence                    1356778899999999 999 578999999999999999975

>KOG4283|consensus

Probab=99.33  E-value=2.3e-11  Score=69.00  Aligned_cols=86  Identities=31%  Similarity=0.539  Sum_probs=70.9

Q ss_pred             cceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCC-EEEEecCCCcEEEEeCCCC
Q psy14456          4 GTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGA-TVLSGSHDRTVRFWDLRTR   81 (93)
Q Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~-~~~s~~~~~~i~~~d~~~~   81 (93)
                      +.|+.-+++|-..  ..-++++|.++..|++-|+.+|..-+.+.+|...|..+ |+|... .+++++.|+.+++||++..
T Consensus       144 ~~VYshamSp~a~--sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRra  221 (397)
T KOG4283|consen  144 GKVYSHAMSPMAM--SHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRA  221 (397)
T ss_pred             ceeehhhcChhhh--cceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecc
Confidence            5566777777531  24577778889999999999999999999999999999 999655 5679999999999999976


Q ss_pred             -ceeeEecCcc
Q psy14456         82 -GCTNVLTPIT   91 (93)
Q Consensus        82 -~~~~~~~~~~   91 (93)
                       .|.+.+..|.
T Consensus       222 sgcf~~lD~hn  232 (397)
T KOG4283|consen  222 SGCFRVLDQHN  232 (397)
T ss_pred             cceeEEeeccc
Confidence             6787776654

>KOG4283|consensus

Probab=99.32  E-value=1.3e-11  Score=69.95  Aligned_cols=77  Identities=23%  Similarity=0.391  Sum_probs=64.6

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCC-ceeEEe--------------eccccceEEE-EecCCCEEE
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATG-QAFQAL--------------SGHSGHVLSL-YNWGGATVL   65 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~-~~~~~~--------------~~~~~~v~~~-~~~~~~~~~   65 (93)
                      |++.|.++.|+|.    .++++++|+.||.+++||++.. .+...+              ..|.+.+..+ |..++.+++
T Consensus       187 Hr~~vlaV~Wsp~----~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~  262 (397)
T KOG4283|consen  187 HRDGVLAVEWSPS----SEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLA  262 (397)
T ss_pred             ccCceEEEEeccC----ceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhh
Confidence            7889999999998    8888888888999999999754 222222              3467788899 999999999


Q ss_pred             EecCCCcEEEEeCCCCc
Q psy14456         66 SGSHDRTVRFWDLRTRG   82 (93)
Q Consensus        66 s~~~~~~i~~~d~~~~~   82 (93)
                      +++.|..+++|+..+|.
T Consensus       263 ~~gtd~r~r~wn~~~G~  279 (397)
T KOG4283|consen  263 SCGTDDRIRVWNMESGR  279 (397)
T ss_pred             hccCccceEEeecccCc
Confidence            99999999999998875

>KOG0646|consensus

Probab=99.30  E-value=1.4e-11  Score=72.73  Aligned_cols=85  Identities=21%  Similarity=0.370  Sum_probs=72.2

Q ss_pred             ccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC-
Q psy14456          3 DGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT-   80 (93)
Q Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~-   80 (93)
                      .++|.+++-+|.    +.++++++ ..+.+.+|.+.+|..+..+.+|...|+++ |+-++.+++|++.|+.|.+|++-. 
T Consensus        81 Pg~v~al~s~n~----G~~l~ag~-i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~l  155 (476)
T KOG0646|consen   81 PGPVHALASSNL----GYFLLAGT-ISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDL  155 (476)
T ss_pred             ccceeeeecCCC----ceEEEeec-ccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEee
Confidence            578999999988    78888776 59999999999999999999999999999 999999999999999999997542 


Q ss_pred             --------CceeeEecCccC
Q psy14456         81 --------RGCTNVLTPITV   92 (93)
Q Consensus        81 --------~~~~~~~~~~~~   92 (93)
                              -.++..|..|+.
T Consensus       156 v~a~~~~~~~p~~~f~~Htl  175 (476)
T KOG0646|consen  156 VSADNDHSVKPLHIFSDHTL  175 (476)
T ss_pred             cccccCCCccceeeeccCcc
Confidence                    235566665554

>KOG0267|consensus

Probab=99.30  E-value=1.1e-11  Score=76.64  Aligned_cols=85  Identities=22%  Similarity=0.292  Sum_probs=74.8

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      |...+..++|+|-    +.++ ++|+.|+.+.+||.+...|.+.+.+|...+..+ |.|+|.+++.++.|..+.+||...
T Consensus       111 h~~~~~sv~f~P~----~~~~-a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~a  185 (825)
T KOG0267|consen  111 HLLNITSVDFHPY----GEFF-ASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTA  185 (825)
T ss_pred             cccCcceeeeccc----eEEe-ccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccc
Confidence            5678889999997    5555 666779999999999888999999999999999 999999999999999999999999


Q ss_pred             CceeeEecCcc
Q psy14456         81 RGCTNVLTPIT   91 (93)
Q Consensus        81 ~~~~~~~~~~~   91 (93)
                      |+....|..|+
T Consensus       186 gk~~~ef~~~e  196 (825)
T KOG0267|consen  186 GKLSKEFKSHE  196 (825)
T ss_pred             ccccccccccc
Confidence            98888877554

>KOG0278|consensus

Probab=99.29  E-value=4e-12  Score=70.57  Aligned_cols=82  Identities=33%  Similarity=0.547  Sum_probs=70.8

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCce-eEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQA-FQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLR   79 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~-~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~   79 (93)
                      |.--|..++|+.+    .+.++++| .+..+++||++.... ...+.+|.+.|..+ |....+.+++...|+.+++||.+
T Consensus        99 hkhivk~~af~~d----s~~lltgg-~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~r  173 (334)
T KOG0278|consen   99 HKHIVKAVAFSQD----SNYLLTGG-QEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHR  173 (334)
T ss_pred             hhheeeeEEeccc----chhhhccc-hHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEec
Confidence            4556889999998    78899988 599999999986643 56788999999999 98888888888999999999999


Q ss_pred             CCceeeEec
Q psy14456         80 TRGCTNVLT   88 (93)
Q Consensus        80 ~~~~~~~~~   88 (93)
                      ++...+.+.
T Consensus       174 Tgt~v~sL~  182 (334)
T KOG0278|consen  174 TGTEVQSLE  182 (334)
T ss_pred             cCcEEEEEe
Confidence            998887775

>KOG0306|consensus

Probab=99.28  E-value=4.4e-11  Score=74.34  Aligned_cols=84  Identities=26%  Similarity=0.307  Sum_probs=75.7

Q ss_pred             ccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCCC
Q psy14456          3 DGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTR   81 (93)
Q Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~   81 (93)
                      +..|.|+.++|+    +.+++.+= -|.++++|-+++.+-...+.||.-+|.++ .+|+..+++||+.|+.+++|-+.=|
T Consensus       508 ~ddvL~v~~Spd----gk~LaVsL-LdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFG  582 (888)
T KOG0306|consen  508 EDDVLCVSVSPD----GKLLAVSL-LDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFG  582 (888)
T ss_pred             cccEEEEEEcCC----CcEEEEEe-ccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccc
Confidence            357899999999    67766654 69999999999999888999999999999 9999999999999999999999989


Q ss_pred             ceeeEecCcc
Q psy14456         82 GCTNVLTPIT   91 (93)
Q Consensus        82 ~~~~~~~~~~   91 (93)
                      .|-+.|.+|.
T Consensus       583 DCHKS~fAHd  592 (888)
T KOG0306|consen  583 DCHKSFFAHD  592 (888)
T ss_pred             hhhhhhhccc
Confidence            9999888874

>KOG0313|consensus

Probab=99.27  E-value=3.6e-11  Score=69.71  Aligned_cols=73  Identities=23%  Similarity=0.409  Sum_probs=64.1

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCc-eeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQ-AFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLR   79 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~-~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~   79 (93)
                      |++.|..+.|+|.    ..+++.+|+.|+++++||+++.+ ++..+.+|...+.++ |+. +.++++|+.|.+++++...
T Consensus       344 H~nwVssvkwsp~----~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~-~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  344 HKNWVSSVKWSPT----NEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE-GGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             chhhhhheecCCC----CceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC-CceEEeccCcceEEEeccc
Confidence            7889999999998    67777778889999999999877 899999999999999 764 5689999999999998654

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.27  E-value=2.2e-10  Score=62.30  Aligned_cols=78  Identities=15%  Similarity=0.353  Sum_probs=59.0

Q ss_pred             cceeEEEEEecCCCCcceE-EEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCC---CcEEEEeC
Q psy14456          4 GTVRDVCFIEDTSNKSSLL-ISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHD---RTVRFWDL   78 (93)
Q Consensus         4 ~~v~~~~~~~~~~~~~~~~-~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~---~~i~~~d~   78 (93)
                      ++|.+++|+|+    ++.+ +..|..+..+.+||++ +..+..+.  ...+..+ |+|+|++++.++.+   |.+.+||.
T Consensus        60 ~~I~~~~WsP~----g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~  132 (194)
T PF08662_consen   60 GPIHDVAWSPN----GNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDV  132 (194)
T ss_pred             CceEEEEECcC----CCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEEC
Confidence            57999999999    4554 4546557899999996 55555553  4566778 99999999987643   67999999


Q ss_pred             CCCceeeEec
Q psy14456         79 RTRGCTNVLT   88 (93)
Q Consensus        79 ~~~~~~~~~~   88 (93)
                      ++.+.+..+.
T Consensus       133 ~~~~~i~~~~  142 (194)
T PF08662_consen  133 RKKKKISTFE  142 (194)
T ss_pred             CCCEEeeccc
Confidence            9877766553

>KOG1036|consensus

Probab=99.25  E-value=1.5e-10  Score=65.59  Aligned_cols=73  Identities=32%  Similarity=0.632  Sum_probs=62.5

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      |++++.+++|.++     ..+++++. ||.|+.+|++++.... +..|...+.++ +.+....+++++.|++|++||.+.
T Consensus        53 ~~~plL~c~F~d~-----~~~~~G~~-dg~vr~~Dln~~~~~~-igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~  125 (323)
T KOG1036|consen   53 HGAPLLDCAFADE-----STIVTGGL-DGQVRRYDLNTGNEDQ-IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRN  125 (323)
T ss_pred             cCCceeeeeccCC-----ceEEEecc-CceEEEEEecCCccee-eccCCCceEEEEeeccCCeEEEcccCccEEEEeccc
Confidence            7889999999875     45677775 9999999999887644 45699999999 888888899999999999999995


Q ss_pred             C
Q psy14456         81 R   81 (93)
Q Consensus        81 ~   81 (93)
                      .
T Consensus       126 ~  126 (323)
T KOG1036|consen  126 K  126 (323)
T ss_pred             c
Confidence            3

>KOG1007|consensus

Probab=99.24  E-value=5.3e-11  Score=67.31  Aligned_cols=75  Identities=28%  Similarity=0.389  Sum_probs=63.7

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCC-ceeEEeeccccceEEE-Eec-CCCEEEEecCCCcEEEEeC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATG-QAFQALSGHSGHVLSL-YNW-GGATVLSGSHDRTVRFWDL   78 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~-~~~~~~~~~~~~v~~~-~~~-~~~~~~s~~~~~~i~~~d~   78 (93)
                      |...|..++|.|+.   ...++++| .||.|++||.+.. .+++.+.+|...+.++ |+| ..+++++++.|..+.+|..
T Consensus       213 Hgq~vrdlDfNpnk---q~~lvt~g-DdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca  288 (370)
T KOG1007|consen  213 HGQRVRDLDFNPNK---QHILVTCG-DDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCA  288 (370)
T ss_pred             hcceeeeccCCCCc---eEEEEEcC-CCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEec
Confidence            67789999999983   45667777 5999999998754 5688899999999999 999 5788999999999999976


Q ss_pred             CC
Q psy14456         79 RT   80 (93)
Q Consensus        79 ~~   80 (93)
                      .+
T Consensus       289 ~s  290 (370)
T KOG1007|consen  289 SS  290 (370)
T ss_pred             cc
Confidence            64

>KOG0288|consensus

Probab=99.24  E-value=4.5e-12  Score=74.01  Aligned_cols=81  Identities=27%  Similarity=0.536  Sum_probs=70.9

Q ss_pred             cceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCCCc
Q psy14456          4 GTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRG   82 (93)
Q Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~   82 (93)
                      +.|+.++|.++    +..+++++. |+.+++|++...+...++.+|++.++++ |.....-+++++.|.+++.||+++..
T Consensus       220 g~it~~d~d~~----~~~~iAas~-d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~  294 (459)
T KOG0288|consen  220 GNITSIDFDSD----NKHVIAASN-DKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAY  294 (459)
T ss_pred             CCcceeeecCC----CceEEeecC-CCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhh
Confidence            56999999988    677788775 9999999999999999999999999999 87766559999999999999999988


Q ss_pred             eeeEecC
Q psy14456         83 CTNVLTP   89 (93)
Q Consensus        83 ~~~~~~~   89 (93)
                      |.+++..
T Consensus       295 C~kt~l~  301 (459)
T KOG0288|consen  295 CSKTVLP  301 (459)
T ss_pred             eeccccc
Confidence            7776543

>KOG0643|consensus

Probab=99.23  E-value=1.2e-10  Score=65.23  Aligned_cols=83  Identities=23%  Similarity=0.342  Sum_probs=72.2

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCcee-EEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAF-QALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLR   79 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~-~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~   79 (93)
                      +.+.++..-|.|-    ++.++++. ++|.|..||++++..+ ..-..|...|+.+ ++++..++++++.|.+-++||.+
T Consensus       146 ~~skit~a~Wg~l----~~~ii~Gh-e~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~  220 (327)
T KOG0643|consen  146 PDSKITSALWGPL----GETIIAGH-EDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVR  220 (327)
T ss_pred             Cccceeeeeeccc----CCEEEEec-CCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeecc
Confidence            4467888899998    78888877 6999999999998654 4557799999999 99999999999999999999999


Q ss_pred             CCceeeEecC
Q psy14456         80 TRGCTNVLTP   89 (93)
Q Consensus        80 ~~~~~~~~~~   89 (93)
                      +-++++++..
T Consensus       221 tl~v~Kty~t  230 (327)
T KOG0643|consen  221 TLEVLKTYTT  230 (327)
T ss_pred             ceeeEEEeee
Confidence            9988888754

>KOG0301|consensus

Probab=99.23  E-value=2.8e-10  Score=70.19  Aligned_cols=78  Identities=29%  Similarity=0.555  Sum_probs=66.7

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      |+.-|..+++-++     .-++++++ ||.|+.|++ ++.++..+.+|++-++++ ...+...+++++.|+++++|+.. 
T Consensus       178 HtD~VRgL~vl~~-----~~flScsN-Dg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~-  249 (745)
T KOG0301|consen  178 HTDCVRGLAVLDD-----SHFLSCSN-DGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD-  249 (745)
T ss_pred             chhheeeeEEecC-----CCeEeecC-CceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC-
Confidence            7888999999886     34778775 999999998 788888899999999999 78888999999999999999876 


Q ss_pred             CceeeEec
Q psy14456         81 RGCTNVLT   88 (93)
Q Consensus        81 ~~~~~~~~   88 (93)
                       .+.+.+.
T Consensus       250 -e~~q~I~  256 (745)
T KOG0301|consen  250 -ECVQVIT  256 (745)
T ss_pred             -ceEEEEe
Confidence             5666554

>KOG0310|consensus

Probab=99.22  E-value=2.2e-10  Score=68.10  Aligned_cols=80  Identities=28%  Similarity=0.361  Sum_probs=67.0

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCce-eEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQA-FQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLR   79 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~-~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~   79 (93)
                      |..+|..+.+-|.    ++.++++|  ...+++||+.+|.. +..+..|...|+|+ +..++.-|++++.|+.+++||+.
T Consensus       195 hg~pVe~vl~lps----gs~iasAg--Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t  268 (487)
T KOG0310|consen  195 HGCPVESVLALPS----GSLIASAG--GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTT  268 (487)
T ss_pred             CCCceeeEEEcCC----CCEEEEcC--CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEcc
Confidence            6778999999998    68888876  79999999986654 45555699999999 99999999999999999999987


Q ss_pred             CCceeeEe
Q psy14456         80 TRGCTNVL   87 (93)
Q Consensus        80 ~~~~~~~~   87 (93)
                      +.+....+
T Consensus       269 ~~Kvv~s~  276 (487)
T KOG0310|consen  269 NYKVVHSW  276 (487)
T ss_pred             ceEEEEee
Confidence            76655544

>KOG2111|consensus

Probab=99.22  E-value=3.6e-10  Score=64.45  Aligned_cols=77  Identities=17%  Similarity=0.271  Sum_probs=65.5

Q ss_pred             CCccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEee--ccccceEEE-EecCCCEEEEecCCCcEEEEe
Q psy14456          1 MHDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALS--GHSGHVLSL-YNWGGATVLSGSHDRTVRFWD   77 (93)
Q Consensus         1 ~h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~--~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d   77 (93)
                      .|.+.|.|++..-+    +..+++++...-.||+||..+|..++.+.  ...+.+.++ |+|+..+++..+..+++.++.
T Consensus       179 AH~s~Iacv~Ln~~----Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~  254 (346)
T KOG2111|consen  179 AHDSDIACVALNLQ----GTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFS  254 (346)
T ss_pred             cccCceeEEEEcCC----ccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEE
Confidence            38899999999988    78888887545557899999999988885  245689999 999999999999999999998


Q ss_pred             CCCC
Q psy14456         78 LRTR   81 (93)
Q Consensus        78 ~~~~   81 (93)
                      ++..
T Consensus       255 l~~~  258 (346)
T KOG2111|consen  255 LRDT  258 (346)
T ss_pred             eecC
Confidence            8753

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.22  E-value=1.2e-10  Score=47.58  Aligned_cols=37  Identities=35%  Similarity=0.673  Sum_probs=34.8

Q ss_pred             ceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEe
Q psy14456         41 QAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWD   77 (93)
Q Consensus        41 ~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d   77 (93)
                      +++..+.+|.+.+.++ |+|++..+++++.|+.+++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            5678899999999999 999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG4328|consensus

Probab=99.19  E-value=2e-10  Score=68.03  Aligned_cols=78  Identities=21%  Similarity=0.302  Sum_probs=64.7

Q ss_pred             CCccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCC----ceeEEeeccccceEEE-Eec-CCCEEEEecCCCcEE
Q psy14456          1 MHDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATG----QAFQALSGHSGHVLSL-YNW-GGATVLSGSHDRTVR   74 (93)
Q Consensus         1 ~h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~----~~~~~~~~~~~~v~~~-~~~-~~~~~~s~~~~~~i~   74 (93)
                      ++.++|++++|+|..   ...++++|+..|.|-+||+.+.    .-+..+..|..+|.++ |+| +...+++.+.||+++
T Consensus       184 v~~~Rit~l~fHPt~---~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR  260 (498)
T KOG4328|consen  184 VTDRRITSLAFHPTE---NRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIR  260 (498)
T ss_pred             ecccceEEEEecccC---cceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceee
Confidence            367899999999985   5477888888999999999532    2356667899999999 999 567888999999999


Q ss_pred             EEeCCCC
Q psy14456         75 FWDLRTR   81 (93)
Q Consensus        75 ~~d~~~~   81 (93)
                      +-|++.+
T Consensus       261 ~~D~~~~  267 (498)
T KOG4328|consen  261 LQDFEGN  267 (498)
T ss_pred             eeeecch
Confidence            9999865

>KOG3914|consensus

Probab=99.17  E-value=1.6e-10  Score=67.28  Aligned_cols=82  Identities=26%  Similarity=0.387  Sum_probs=65.7

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEe-eccccceEEEEecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQAL-SGHSGHVLSLYNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      |-+.+++++|+|+    .+.++++. +|..|++-...--..+..+ .||+.-|..+--.+++.|.+++.|+++++||+++
T Consensus       150 hvSml~dVavS~D----~~~IitaD-RDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~s  224 (390)
T KOG3914|consen  150 HVSMLLDVAVSPD----DQFIITAD-RDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDITS  224 (390)
T ss_pred             hhhhhheeeecCC----CCEEEEec-CCceEEEEecCcccchhhhccccHhheeeeeeccCceeeecCCCCcEEEEeccc
Confidence            5578999999999    78888876 8999998776655555544 5899988887222567789999999999999999


Q ss_pred             CceeeEec
Q psy14456         81 RGCTNVLT   88 (93)
Q Consensus        81 ~~~~~~~~   88 (93)
                      |+++..+.
T Consensus       225 gk~L~t~d  232 (390)
T KOG3914|consen  225 GKLLDTCD  232 (390)
T ss_pred             CCcccccc
Confidence            99886664

>KOG0771|consensus

Probab=99.16  E-value=1.4e-10  Score=67.73  Aligned_cols=76  Identities=25%  Similarity=0.308  Sum_probs=64.9

Q ss_pred             eEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCCCceee
Q psy14456          7 RDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRGCTN   85 (93)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~~~~   85 (93)
                      .+++|..+    +..++++| .||.+|+|+......+.....|...|.++ |+|++..+++.+.| ...+|+.+++.+++
T Consensus       148 k~vaf~~~----gs~latgg-~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a  221 (398)
T KOG0771|consen  148 KVVAFNGD----GSKLATGG-TDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALA  221 (398)
T ss_pred             eEEEEcCC----CCEeeecc-ccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhh
Confidence            56788877    78888888 59999999987777777778899999999 99999999999999 99999999996655


Q ss_pred             Eec
Q psy14456         86 VLT   88 (93)
Q Consensus        86 ~~~   88 (93)
                      ...
T Consensus       222 ~~t  224 (398)
T KOG0771|consen  222 RKT  224 (398)
T ss_pred             hcC
Confidence            443

>KOG1445|consensus

Probab=99.16  E-value=2.3e-10  Score=70.68  Aligned_cols=82  Identities=23%  Similarity=0.345  Sum_probs=71.5

Q ss_pred             cceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCCC-
Q psy14456          4 GTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTR-   81 (93)
Q Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~-   81 (93)
                      -.|.|+.|+|.    .+-++.++. .|.+.+||+.+++.+..+.+|...|.+. |+.+|.++++.+.|+.+++||.+.. 
T Consensus       129 ~~vE~l~fHpT----aDgil~s~a-~g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~  203 (1012)
T KOG1445|consen  129 VIVECLRFHPT----ADGILASGA-HGSVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASM  203 (1012)
T ss_pred             eEEEEeecccC----cCceEEecc-CceEEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCC
Confidence            35889999998    666777775 9999999999999999999999999999 9999999999999999999999964 


Q ss_pred             ceeeEecCc
Q psy14456         82 GCTNVLTPI   90 (93)
Q Consensus        82 ~~~~~~~~~   90 (93)
                      ..++...+|
T Consensus       204 ~piQ~te~H  212 (1012)
T KOG1445|consen  204 EPIQTTEGH  212 (1012)
T ss_pred             Ccccccccc
Confidence            456655554

>KOG0308|consensus

Probab=99.15  E-value=7.6e-10  Score=68.05  Aligned_cols=76  Identities=25%  Similarity=0.263  Sum_probs=69.5

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      |+..|.++-.+++    +..++++++ |++|++||+...+|+.++..|...+.++ .+++-..+.+|+.|+.|..=|+++
T Consensus       212 HTdNVr~ll~~dD----Gt~~ls~sS-DgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n  286 (735)
T KOG0308|consen  212 HTDNVRVLLVNDD----GTRLLSASS-DGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRN  286 (735)
T ss_pred             cccceEEEEEcCC----CCeEeecCC-CceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCC
Confidence            8899999999999    788888875 9999999999999999999999999999 888888999999999999999998


Q ss_pred             Cc
Q psy14456         81 RG   82 (93)
Q Consensus        81 ~~   82 (93)
                      ..
T Consensus       287 ~~  288 (735)
T KOG0308|consen  287 PA  288 (735)
T ss_pred             ch
Confidence            43

>KOG1274|consensus

Probab=99.15  E-value=5.3e-10  Score=70.66  Aligned_cols=82  Identities=24%  Similarity=0.395  Sum_probs=72.5

Q ss_pred             ccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCCC
Q psy14456          3 DGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTR   81 (93)
Q Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~   81 (93)
                      +-++.+++|+-+    ++++++++ .|-.|++.+..+......+.+|.++|.++ |+|.+.++++.+.||.+.+||+..+
T Consensus        96 tlp~r~~~v~g~----g~~iaags-dD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~  170 (933)
T KOG1274|consen   96 TLPIRDLAVSGS----GKMIAAGS-DDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDG  170 (933)
T ss_pred             eccceEEEEecC----CcEEEeec-CceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccc
Confidence            457888999877    77888776 59999999999999999999999999999 9999999999999999999999998


Q ss_pred             ceeeEecC
Q psy14456         82 GCTNVLTP   89 (93)
Q Consensus        82 ~~~~~~~~   89 (93)
                      .+..++..
T Consensus       171 ~~~~tl~~  178 (933)
T KOG1274|consen  171 ILSKTLTG  178 (933)
T ss_pred             hhhhhccc
Confidence            77766654

>KOG0321|consensus

Probab=99.15  E-value=1.3e-10  Score=71.16  Aligned_cols=76  Identities=29%  Similarity=0.423  Sum_probs=64.9

Q ss_pred             CCccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEE--eeccccceEEE-Eec-CCCEEEEecCCCcEEEE
Q psy14456          1 MHDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQA--LSGHSGHVLSL-YNW-GGATVLSGSHDRTVRFW   76 (93)
Q Consensus         1 ~h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~--~~~~~~~v~~~-~~~-~~~~~~s~~~~~~i~~~   76 (93)
                      .|-..|.++.|.|.    ...|++.. .|.++++||++...+...  +.+|...+..+ |.+ +...+++|+.|+.+.+|
T Consensus        98 aH~nAifDl~wapg----e~~lVsas-GDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illW  172 (720)
T KOG0321|consen   98 AHKNAIFDLKWAPG----ESLLVSAS-GDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLW  172 (720)
T ss_pred             cccceeEeeccCCC----ceeEEEcc-CCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEE
Confidence            48889999999995    56666655 599999999998887665  78999999999 988 56788999999999999


Q ss_pred             eCCCC
Q psy14456         77 DLRTR   81 (93)
Q Consensus        77 d~~~~   81 (93)
                      |++-.
T Consensus       173 D~R~n  177 (720)
T KOG0321|consen  173 DCRCN  177 (720)
T ss_pred             EEecc
Confidence            99854

>KOG0646|consensus

Probab=99.14  E-value=1.2e-09  Score=64.75  Aligned_cols=81  Identities=25%  Similarity=0.380  Sum_probs=67.3

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCC---------CCceeEEeeccccceEEE-EecC--CCEEEEecC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCA---------TGQAFQALSGHSGHVLSL-YNWG--GATVLSGSH   69 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~---------~~~~~~~~~~~~~~v~~~-~~~~--~~~~~s~~~   69 (93)
                      |=..|+|+.|+.+    +..++++| .||.|.+|++.         +..+++.+..|+-.|+++ ..+.  ...++|++.
T Consensus       122 HYQ~ITcL~fs~d----gs~iiTgs-kDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~  196 (476)
T KOG0646|consen  122 HYQSITCLKFSDD----GSHIITGS-KDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASE  196 (476)
T ss_pred             hccceeEEEEeCC----CcEEEecC-CCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecC
Confidence            5578999999998    78999988 69999999863         235678888999999998 6554  457899999


Q ss_pred             CCcEEEEeCCCCceeeEe
Q psy14456         70 DRTVRFWDLRTRGCTNVL   87 (93)
Q Consensus        70 ~~~i~~~d~~~~~~~~~~   87 (93)
                      |+++++||+..+..+..+
T Consensus       197 D~t~k~wdlS~g~LLlti  214 (476)
T KOG0646|consen  197 DRTIKLWDLSLGVLLLTI  214 (476)
T ss_pred             CceEEEEEeccceeeEEE
Confidence            999999999998776655

>KOG1007|consensus

Probab=99.14  E-value=1.7e-10  Score=65.28  Aligned_cols=85  Identities=16%  Similarity=0.203  Sum_probs=64.7

Q ss_pred             ccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEe-eccccceEEE-EecCC-CEEEEecCCCcEEEEeCC
Q psy14456          3 DGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQAL-SGHSGHVLSL-YNWGG-ATVLSGSHDRTVRFWDLR   79 (93)
Q Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~-~~~~~~v~~~-~~~~~-~~~~s~~~~~~i~~~d~~   79 (93)
                      +...+.-+|+|...  ++.+++.+  ++++..||.++..+...+ ..|...+..+ |+|.. ..+++|+.|+.+++||.|
T Consensus       170 ~~~ftsg~WspHHd--gnqv~tt~--d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R  245 (370)
T KOG1007|consen  170 RHSFTSGAWSPHHD--GNQVATTS--DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTR  245 (370)
T ss_pred             cceecccccCCCCc--cceEEEeC--CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEecc
Confidence            34566678888431  45566653  999999999998887766 4688889999 99965 467899999999999999


Q ss_pred             CC-ceeeEecCcc
Q psy14456         80 TR-GCTNVLTPIT   91 (93)
Q Consensus        80 ~~-~~~~~~~~~~   91 (93)
                      .. .+++.+.+|.
T Consensus       246 ~tk~pv~el~~Hs  258 (370)
T KOG1007|consen  246 KTKFPVQELPGHS  258 (370)
T ss_pred             CCCccccccCCCc
Confidence            64 4677766653

>KOG1446|consensus

Probab=99.14  E-value=3.6e-09  Score=60.15  Aligned_cols=81  Identities=28%  Similarity=0.369  Sum_probs=66.9

Q ss_pred             cceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccce---EEE-EecCCCEEEEecCCCcEEEEeCC
Q psy14456          4 GTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHV---LSL-YNWGGATVLSGSHDRTVRFWDLR   79 (93)
Q Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v---~~~-~~~~~~~~~s~~~~~~i~~~d~~   79 (93)
                      ...+.+.|+|+    ++.++.+. ..+.+.+.|.-+|..+..+..+.+.-   ... |.|+++.+++++.|+.+.+|+++
T Consensus       188 ~ew~~l~FS~d----GK~iLlsT-~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~  262 (311)
T KOG1446|consen  188 AEWTDLEFSPD----GKSILLST-NASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLE  262 (311)
T ss_pred             cceeeeEEcCC----CCEEEEEe-CCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcC
Confidence            46788999999    67766665 48999999999999888887665432   233 89999999999999999999999


Q ss_pred             CCceeeEecC
Q psy14456         80 TRGCTNVLTP   89 (93)
Q Consensus        80 ~~~~~~~~~~   89 (93)
                      ++.....+.+
T Consensus       263 tg~~v~~~~~  272 (311)
T KOG1446|consen  263 TGKKVAVLRG  272 (311)
T ss_pred             CCcEeeEecC
Confidence            9988777765

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.14  E-value=2.8e-09  Score=58.08  Aligned_cols=78  Identities=12%  Similarity=0.233  Sum_probs=59.4

Q ss_pred             CccceeEEEEEecCCCCcceEEEeee--CCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecC------CCc
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGA--GDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSH------DRT   72 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~--~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~------~~~   72 (93)
                      ++..+..+.|+|.    +++++.+|.  ..|.+.+||.+..+.+.... |. .+..+ |+|+|++++++..      |..
T Consensus        99 ~~~~~n~i~wsP~----G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng  172 (194)
T PF08662_consen   99 GTQPRNTISWSPD----GRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNG  172 (194)
T ss_pred             cCCCceEEEECCC----CCEEEEEEccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCCCCEEEEEEeccceecccc
Confidence            4567889999999    788888763  35779999999888777654 33 35677 9999999998764      678


Q ss_pred             EEEEeCCCCceeeE
Q psy14456         73 VRFWDLRTRGCTNV   86 (93)
Q Consensus        73 i~~~d~~~~~~~~~   86 (93)
                      +++|++. |..+..
T Consensus       173 ~~Iw~~~-G~~l~~  185 (194)
T PF08662_consen  173 FKIWSFQ-GRLLYK  185 (194)
T ss_pred             EEEEEec-CeEeEe
Confidence            8999985 554443

>KOG1539|consensus

Probab=99.14  E-value=6.6e-10  Score=69.80  Aligned_cols=70  Identities=26%  Similarity=0.370  Sum_probs=61.2

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCC-CcEEEEe
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHD-RTVRFWD   77 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~-~~i~~~d   77 (93)
                      |+++|++++|+|+    ++++++++ .|++|++||+.++.++-.+. -..+..++ |+|.+.+++|.-.| .-|.+|.
T Consensus       575 h~nritd~~FS~D----grWlisas-mD~tIr~wDlpt~~lID~~~-vd~~~~sls~SPngD~LAT~Hvd~~gIylWs  646 (910)
T KOG1539|consen  575 HGNRITDMTFSPD----GRWLISAS-MDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSPNGDFLATVHVDQNGIYLWS  646 (910)
T ss_pred             cccceeeeEeCCC----CcEEEEee-cCCcEEEEeccCcceeeeEe-cCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence            8899999999999    89999987 49999999999999887664 45667888 99999999999877 6788885

>KOG1538|consensus

Probab=99.13  E-value=3.4e-10  Score=70.31  Aligned_cols=69  Identities=29%  Similarity=0.589  Sum_probs=61.6

Q ss_pred             ceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCC
Q psy14456          5 TVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLR   79 (93)
Q Consensus         5 ~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~   79 (93)
                      .|..++|-|+|   .++++++   +..+.+||.+.|..++++++|++.|+++ |+.+|..+++|+.|..+.+|..+
T Consensus        14 ci~d~afkPDG---sqL~lAA---g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~k   83 (1081)
T KOG1538|consen   14 CINDIAFKPDG---TQLILAA---GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSK   83 (1081)
T ss_pred             chheeEECCCC---ceEEEec---CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccc
Confidence            57899999995   5555554   5689999999999999999999999999 99999999999999999999765

>KOG0772|consensus

Probab=99.13  E-value=1.9e-10  Score=69.24  Aligned_cols=75  Identities=20%  Similarity=0.367  Sum_probs=58.0

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCc-eeEEee-----ccccceEEE-EecCCCEEEEecCCCcEE
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQ-AFQALS-----GHSGHVLSL-YNWGGATVLSGSHDRTVR   74 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~-~~~~~~-----~~~~~v~~~-~~~~~~~~~s~~~~~~i~   74 (93)
                      |.+.++|-+|+|..   ...+++++ .|+++++|+++... .+..++     +..-.+... |++++.++++++.||.|.
T Consensus       267 Hia~lt~g~whP~~---k~~FlT~s-~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ  342 (641)
T KOG0772|consen  267 HIAELTCGCWHPDN---KEEFLTCS-YDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQ  342 (641)
T ss_pred             ceeeeeccccccCc---ccceEEec-CCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCcee
Confidence            77899999999985   55677777 59999999987542 233332     222345566 999999999999999999


Q ss_pred             EEeCCC
Q psy14456         75 FWDLRT   80 (93)
Q Consensus        75 ~~d~~~   80 (93)
                      +|+.++
T Consensus       343 ~W~~~~  348 (641)
T KOG0772|consen  343 IWDKGS  348 (641)
T ss_pred             eeecCC
Confidence            999764

>KOG0301|consensus

Probab=99.13  E-value=3.7e-10  Score=69.66  Aligned_cols=80  Identities=26%  Similarity=0.379  Sum_probs=67.4

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      |+++|..+..-|+    + .+++++ .|..|++|.-  +..++++.+|++.|..+ +-+ ...+++|+.|+.|+.|++ +
T Consensus       139 H~asVWAv~~l~e----~-~~vTgs-aDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~-~~~flScsNDg~Ir~w~~-~  208 (745)
T KOG0301|consen  139 HTASVWAVASLPE----N-TYVTGS-ADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLD-DSHFLSCSNDGSIRLWDL-D  208 (745)
T ss_pred             cchheeeeeecCC----C-cEEecc-CcceeeeccC--CchhhhhccchhheeeeEEec-CCCeEeecCCceEEEEec-c
Confidence            8899999999887    4 667765 5999999975  77889999999999998 554 456889999999999999 7


Q ss_pred             CceeeEecCcc
Q psy14456         81 RGCTNVLTPIT   91 (93)
Q Consensus        81 ~~~~~~~~~~~   91 (93)
                      |.++....+|+
T Consensus       209 ge~l~~~~ght  219 (745)
T KOG0301|consen  209 GEVLLEMHGHT  219 (745)
T ss_pred             Cceeeeeeccc
Confidence            88888887774

>KOG0322|consensus

Probab=99.13  E-value=1.4e-10  Score=64.84  Aligned_cols=69  Identities=25%  Similarity=0.329  Sum_probs=62.8

Q ss_pred             ceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeC
Q psy14456          5 TVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDL   78 (93)
Q Consensus         5 ~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~   78 (93)
                      .|..+...|+    ++.++++| =|+.+|+|.-++..++..++-|.+.++++ |+|+..+++.+++|..|.+|++
T Consensus       253 Gv~gvrIRpD----~KIlATAG-WD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  253 GVSGVRIRPD----GKILATAG-WDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             CccceEEccC----CcEEeecc-cCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            3566777888    78889988 59999999999999999999999999999 9999999999999999999985

>KOG0300|consensus

Probab=99.13  E-value=6.1e-10  Score=64.03  Aligned_cols=81  Identities=28%  Similarity=0.474  Sum_probs=61.9

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCC-ceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATG-QAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLR   79 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~-~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~   79 (93)
                      |....+.++-+|.    ..+++++ ++|.+.++||++.. ..+..|++|+..+.+. |.-+ ..+++++.|.++++||++
T Consensus       313 Hd~ELtHcstHpt----QrLVvTs-SrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLr  386 (481)
T KOG0300|consen  313 HDSELTHCSTHPT----QRLVVTS-SRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLR  386 (481)
T ss_pred             cchhccccccCCc----ceEEEEe-ccCceeEeccchhhcceeeeecccccceeEEEEecC-CceeecCCCceEEEeeec
Confidence            4556677777776    5555555 58999999999844 4577899999999999 8765 568899999999999998


Q ss_pred             CC-ceeeEec
Q psy14456         80 TR-GCTNVLT   88 (93)
Q Consensus        80 ~~-~~~~~~~   88 (93)
                      +- .++.+++
T Consensus       387 NMRsplATIR  396 (481)
T KOG0300|consen  387 NMRSPLATIR  396 (481)
T ss_pred             cccCcceeee
Confidence            74 3444444

>KOG2110|consensus

Probab=99.10  E-value=3.7e-09  Score=61.37  Aligned_cols=73  Identities=16%  Similarity=0.227  Sum_probs=61.8

Q ss_pred             cceEEEee-eCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCc-EEEEeCCCCceeeEecCcc
Q psy14456         19 SSLLISGG-AGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRT-VRFWDLRTRGCTNVLTPIT   91 (93)
Q Consensus        19 ~~~~~~~g-~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~-i~~~d~~~~~~~~~~~~~~   91 (93)
                      +.+++--+ ...|.|.+||..+-+....+..|.+.+.++ |+++|.+++|++..|+ |+++.+..|+.++.|+...
T Consensus       141 n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~  216 (391)
T KOG2110|consen  141 NCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGT  216 (391)
T ss_pred             CceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCc
Confidence            44555333 237899999999999999999999999999 9999999999998876 5999999999999987643

>KOG0288|consensus

Probab=99.10  E-value=4.3e-10  Score=65.98  Aligned_cols=66  Identities=29%  Similarity=0.477  Sum_probs=57.1

Q ss_pred             eeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeecccc--ceEEE-EecCCCEEEEecCCCcEEEE
Q psy14456          6 VRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSG--HVLSL-YNWGGATVLSGSHDRTVRFW   76 (93)
Q Consensus         6 v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~--~v~~~-~~~~~~~~~s~~~~~~i~~~   76 (93)
                      .+.+.|+|+    +.++++++ .||.|.+|++.++++...+.....  .|+++ |++.|..+++++.++.+.+|
T Consensus       390 wtrvvfSpd----~~YvaAGS-~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  390 WTRVVFSPD----GSYVAAGS-ADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             cceeEECCC----Cceeeecc-CCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence            677889998    78877766 599999999999999887765444  59999 99999999999999999998

>KOG0641|consensus

Probab=99.09  E-value=2.1e-09  Score=59.41  Aligned_cols=73  Identities=25%  Similarity=0.343  Sum_probs=65.4

Q ss_pred             ccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          3 DGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      .+.|..++..|.    +.+++++- .|....+||++-++.++.+..|...|.++ |+|...++++++.|..|++-|++.
T Consensus       231 ssavaav~vdps----grll~sg~-~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqg  304 (350)
T KOG0641|consen  231 SSAVAAVAVDPS----GRLLASGH-ADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG  304 (350)
T ss_pred             cceeEEEEECCC----cceeeecc-CCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeeccc
Confidence            467899999997    66666654 69999999999999999999999999999 999999999999999999999874

>KOG1332|consensus

Probab=99.09  E-value=5.6e-10  Score=61.96  Aligned_cols=63  Identities=22%  Similarity=0.343  Sum_probs=54.5

Q ss_pred             cceEEEeeeCCCeEEEEeCCCC---ceeEEeeccccceEEE-Eec--CCCEEEEecCCCcEEEEeCCCCc
Q psy14456         19 SSLLISGGAGDCKIYVTDCATG---QAFQALSGHSGHVLSL-YNW--GGATVLSGSHDRTVRFWDLRTRG   82 (93)
Q Consensus        19 ~~~~~~~g~~~~~v~~~~~~~~---~~~~~~~~~~~~v~~~-~~~--~~~~~~s~~~~~~i~~~d~~~~~   82 (93)
                      +.+++++++ |++|+|+..+..   ..+..+.+|.+++..+ |..  .|..|++++.|+.+.+|..+.++
T Consensus        23 gkrlATcsS-D~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~   91 (299)
T KOG1332|consen   23 GKRLATCSS-DGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGR   91 (299)
T ss_pred             cceeeeecC-CccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCc
Confidence            678899886 999999998754   4577889999999999 754  79999999999999999988874

>KOG1272|consensus

Probab=99.08  E-value=2.1e-10  Score=68.18  Aligned_cols=69  Identities=22%  Similarity=0.322  Sum_probs=58.7

Q ss_pred             eEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCCCceeeEecC
Q psy14456         21 LLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRGCTNVLTP   89 (93)
Q Consensus        21 ~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~   89 (93)
                      -++-.|-.+|+|.+|......++..+..|.+++.++ +.++|++++|.+.|+.+++||++....+.+++.
T Consensus       264 aVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t  333 (545)
T KOG1272|consen  264 AVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT  333 (545)
T ss_pred             ceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec
Confidence            344445459999999999999988888999999999 999999999999999999999998765555543

>KOG0300|consensus

Probab=99.08  E-value=4.1e-10  Score=64.72  Aligned_cols=85  Identities=22%  Similarity=0.341  Sum_probs=72.6

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      |.+.|.++.|-..    ++.++++. =|.+..+||++++..++.+.+|..+.+.. -+|...++++.+.|.+.++||++.
T Consensus       271 H~~vV~a~dWL~g----g~Q~vTaS-WDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRe  345 (481)
T KOG0300|consen  271 HRAVVSACDWLAG----GQQMVTAS-WDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFRE  345 (481)
T ss_pred             cccceEehhhhcC----cceeeeee-ccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchh
Confidence            6788999999877    67777765 69999999999999999999999998887 788888999999999999999996


Q ss_pred             Cc-eeeEecCcc
Q psy14456         81 RG-CTNVLTPIT   91 (93)
Q Consensus        81 ~~-~~~~~~~~~   91 (93)
                      .- ....|.+|+
T Consensus       346 aI~sV~VFQGHt  357 (481)
T KOG0300|consen  346 AIQSVAVFQGHT  357 (481)
T ss_pred             hcceeeeecccc
Confidence            43 466676764

>KOG1310|consensus

Probab=99.08  E-value=1.3e-09  Score=66.33  Aligned_cols=74  Identities=28%  Similarity=0.512  Sum_probs=63.6

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEe-eccccceEEE-Eec--CCCEEEEecCCCcEEEEe
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQAL-SGHSGHVLSL-YNW--GGATVLSGSHDRTVRFWD   77 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~-~~~~~~v~~~-~~~--~~~~~~s~~~~~~i~~~d   77 (93)
                      |++=|.|+.|..+    +.+++++ +.|-.+.|||.-..+.+..+ .+|...|.+. |-|  ....+++|+.|..|+++|
T Consensus        49 H~GCVN~LeWn~d----G~lL~SG-SDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfd  123 (758)
T KOG1310|consen   49 HTGCVNCLEWNAD----GELLASG-SDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFD  123 (758)
T ss_pred             ccceecceeecCC----CCEEeec-CCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence            7889999999988    6776665 57999999999877777766 5899999999 988  456888999999999999


Q ss_pred             CCC
Q psy14456         78 LRT   80 (93)
Q Consensus        78 ~~~   80 (93)
                      +..
T Consensus       124 l~~  126 (758)
T KOG1310|consen  124 LDS  126 (758)
T ss_pred             ccc
Confidence            985

>KOG2110|consensus

Probab=99.07  E-value=4.2e-09  Score=61.18  Aligned_cols=77  Identities=22%  Similarity=0.348  Sum_probs=64.4

Q ss_pred             CCccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEee-cc-ccceEEE-EecCCCEEEEecCCCcEEEEe
Q psy14456          1 MHDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALS-GH-SGHVLSL-YNWGGATVLSGSHDRTVRFWD   77 (93)
Q Consensus         1 ~h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~-~~-~~~v~~~-~~~~~~~~~s~~~~~~i~~~d   77 (93)
                      .|.+++.|++|+++    +.+++++..+.-.||++.+..|+.+..|. |. -..+..+ |++++++|++.+..++|++|.
T Consensus       171 aH~~~lAalafs~~----G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFK  246 (391)
T KOG2110|consen  171 AHKGPLAALAFSPD----GTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFK  246 (391)
T ss_pred             ecCCceeEEEECCC----CCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEE
Confidence            48999999999999    78888887544557899999999998885 22 2467788 999999999999999999998


Q ss_pred             CCCC
Q psy14456         78 LRTR   81 (93)
Q Consensus        78 ~~~~   81 (93)
                      +.+.
T Consensus       247 L~~~  250 (391)
T KOG2110|consen  247 LEKV  250 (391)
T ss_pred             eccc
Confidence            8754

>KOG0644|consensus

Probab=99.06  E-value=6.6e-11  Score=74.50  Aligned_cols=85  Identities=24%  Similarity=0.385  Sum_probs=77.4

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      |..+|+|..|...    +.+++++. .|..++||.++++.++..+.||.+.+..+ .+.....+++++.|..|++|.++.
T Consensus       189 H~naVyca~fDrt----g~~Iitgs-dd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~  263 (1113)
T KOG0644|consen  189 HRNAVYCAIFDRT----GRYIITGS-DDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPD  263 (1113)
T ss_pred             hhhheeeeeeccc----cceEeecC-ccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCC
Confidence            7789999999988    78888865 69999999999999999999999999999 887888889999999999999999


Q ss_pred             CceeeEecCcc
Q psy14456         81 RGCTNVLTPIT   91 (93)
Q Consensus        81 ~~~~~~~~~~~   91 (93)
                      +..+..+++|+
T Consensus       264 ~~pvsvLrght  274 (1113)
T KOG0644|consen  264 GAPVSVLRGHT  274 (1113)
T ss_pred             CchHHHHhccc
Confidence            99988888886

>KOG0290|consensus

Probab=99.05  E-value=4.6e-09  Score=59.72  Aligned_cols=85  Identities=20%  Similarity=0.222  Sum_probs=66.6

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCce---eEEeeccccceEEE-EecC-CCEEEEecCCCcEEEE
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQA---FQALSGHSGHVLSL-YNWG-GATVLSGSHDRTVRFW   76 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~---~~~~~~~~~~v~~~-~~~~-~~~~~s~~~~~~i~~~   76 (93)
                      |.+++++.+|..-.   .+++.++. -|-+..+||++++..   ...+-+|..+|..+ |..+ ...+++++.||.+++|
T Consensus       149 ~~aPlTSFDWne~d---p~~igtSS-iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmF  224 (364)
T KOG0290|consen  149 FCAPLTSFDWNEVD---PNLIGTSS-IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMF  224 (364)
T ss_pred             cCCcccccccccCC---cceeEeec-ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEE
Confidence            35678888887653   56677766 599999999998743   55677899999999 9874 4688999999999999


Q ss_pred             eCCCCceeeEecCc
Q psy14456         77 DLRTRGCTNVLTPI   90 (93)
Q Consensus        77 d~~~~~~~~~~~~~   90 (93)
                      |+|....-..+++.
T Consensus       225 DLR~leHSTIIYE~  238 (364)
T KOG0290|consen  225 DLRSLEHSTIIYED  238 (364)
T ss_pred             EecccccceEEecC
Confidence            99987655555443

>KOG2394|consensus

Probab=99.05  E-value=1.6e-09  Score=65.53  Aligned_cols=50  Identities=22%  Similarity=0.405  Sum_probs=46.6

Q ss_pred             cceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-Ee
Q psy14456          4 GTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YN   58 (93)
Q Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~   58 (93)
                      +...|++|+||    +++++++| +|-.|.||.+...+.+..-++|++.|..+ |.
T Consensus       333 GGLLCvcWSPD----GKyIvtGG-EDDLVtVwSf~erRVVARGqGHkSWVs~VaFD  383 (636)
T KOG2394|consen  333 GGLLCVCWSPD----GKYIVTGG-EDDLVTVWSFEERRVVARGQGHKSWVSVVAFD  383 (636)
T ss_pred             cceEEEEEcCC----ccEEEecC-CcceEEEEEeccceEEEeccccccceeeEeec
Confidence            56899999999    89999998 79999999999999999999999999999 98

>KOG0299|consensus

Probab=99.04  E-value=2.1e-09  Score=63.74  Aligned_cols=85  Identities=27%  Similarity=0.379  Sum_probs=70.9

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCcee-----------------EEe-eccccceEEE-EecCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAF-----------------QAL-SGHSGHVLSL-YNWGGA   62 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~-----------------~~~-~~~~~~v~~~-~~~~~~   62 (93)
                      |.-++++++++|+    .++.++++ .+++|.-|++.++...                 ..- ..|...+.++ .++++.
T Consensus       141 H~~s~~~vals~d----~~~~fsas-k~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk  215 (479)
T KOG0299|consen  141 HQLSVTSVALSPD----DKRVFSAS-KDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK  215 (479)
T ss_pred             ccCcceEEEeecc----ccceeecC-CCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence            7789999999999    78888877 5999999998765421                 111 2677788899 999999


Q ss_pred             EEEEecCCCcEEEEeCCCCceeeEecCcc
Q psy14456         63 TVLSGSHDRTVRFWDLRTRGCTNVLTPIT   91 (93)
Q Consensus        63 ~~~s~~~~~~i~~~d~~~~~~~~~~~~~~   91 (93)
                      ++++++.|..+.+|+.++.+.++.+..|.
T Consensus       216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr  244 (479)
T KOG0299|consen  216 YLATGGRDRHVQIWDCDTLEHVKVFKGHR  244 (479)
T ss_pred             EEEecCCCceEEEecCcccchhhcccccc
Confidence            99999999999999999999988887774

>KOG2445|consensus

Probab=99.02  E-value=6.3e-09  Score=59.44  Aligned_cols=73  Identities=22%  Similarity=0.360  Sum_probs=60.5

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCC----ceeEEeeccccceEEE-Eec--CCCEEEEecCCCcEE
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATG----QAFQALSGHSGHVLSL-YNW--GGATVLSGSHDRTVR   74 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~----~~~~~~~~~~~~v~~~-~~~--~~~~~~s~~~~~~i~   74 (93)
                      |..-|.|+.|.+-    ++.++++.+ |.+++|||.+..    .+--....|.+.|..+ |.+  -|+.+++++.|+++.
T Consensus        12 h~DlihdVs~D~~----GRRmAtCSs-Dq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~   86 (361)
T KOG2445|consen   12 HKDLIHDVSFDFY----GRRMATCSS-DQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVS   86 (361)
T ss_pred             Ccceeeeeeeccc----CceeeeccC-CCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCcee
Confidence            6678999999988    788898875 999999997544    3445667899999988 754  589999999999999


Q ss_pred             EEeCC
Q psy14456         75 FWDLR   79 (93)
Q Consensus        75 ~~d~~   79 (93)
                      +|+-.
T Consensus        87 iWEE~   91 (361)
T KOG2445|consen   87 IWEEQ   91 (361)
T ss_pred             eeeec
Confidence            99763

>KOG0268|consensus

Probab=99.02  E-value=3.2e-10  Score=65.73  Aligned_cols=73  Identities=15%  Similarity=0.303  Sum_probs=60.3

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      |...|.|++=+|.    .-..+++|+.||.|++||+....++..++.|.+.|..+ +..  ..+++++.|.+++.|.+.-
T Consensus        65 HrdGV~~lakhp~----~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~  138 (433)
T KOG0268|consen   65 HRDGVSCLAKHPN----KLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG  138 (433)
T ss_pred             cccccchhhcCcc----hhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC
Confidence            6778889988887    42334445579999999999999999999999999998 654  7788999999999998653

>KOG0321|consensus

Probab=99.01  E-value=1.1e-09  Score=67.29  Aligned_cols=80  Identities=25%  Similarity=0.479  Sum_probs=56.2

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCc---------------------------eeEEeeccccceE
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQ---------------------------AFQALSGHSGHVL   54 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~---------------------------~~~~~~~~~~~v~   54 (93)
                      |++.|..++|.|.    ...+++.|.+||.+.+||++...                           .....+.+.+.+.
T Consensus       143 H~~SvkS~cf~~~----n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~  218 (720)
T KOG0321|consen  143 HTGSVKSECFMPT----NPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIF  218 (720)
T ss_pred             cccccchhhhccC----CCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCcee
Confidence            7889999999998    44444445589999999985210                           1122233444444


Q ss_pred             E---E-EecCCCEEEEecC-CCcEEEEeCCCCceee
Q psy14456         55 S---L-YNWGGATVLSGSH-DRTVRFWDLRTRGCTN   85 (93)
Q Consensus        55 ~---~-~~~~~~~~~s~~~-~~~i~~~d~~~~~~~~   85 (93)
                      .   + +..|...|++++. |+.|++||+++..+..
T Consensus       219 ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~  254 (720)
T KOG0321|consen  219 SSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAY  254 (720)
T ss_pred             eeeEEEEEeccceeeeccCCCcceEEEeeccccccc
Confidence            4   4 7778889998886 9999999999865443

>KOG0642|consensus

Probab=99.00  E-value=5.2e-09  Score=63.46  Aligned_cols=77  Identities=29%  Similarity=0.330  Sum_probs=64.6

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCC----------ceeEEeeccccceEEE-EecCCCEEEEecCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATG----------QAFQALSGHSGHVLSL-YNWGGATVLSGSHD   70 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~----------~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~   70 (93)
                      |.++|.|+++.++    ++.++++|- ||.|+.|++...          .....+.||.+.+..+ +++....+++++.|
T Consensus       343 H~gPVl~v~v~~n----~~~~ysgg~-Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~D  417 (577)
T KOG0642|consen  343 HEGPVLCVVVPSN----GEHCYSGGI-DGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSD  417 (577)
T ss_pred             ccCceEEEEecCC----ceEEEeecc-CceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCC
Confidence            8899999999988    788999884 999999965421          2345778999999888 88888889999999


Q ss_pred             CcEEEEeCCCCce
Q psy14456         71 RTVRFWDLRTRGC   83 (93)
Q Consensus        71 ~~i~~~d~~~~~~   83 (93)
                      ++++.|+......
T Consensus       418 gTvr~w~~~~~~~  430 (577)
T KOG0642|consen  418 GTVRLWEPTEESP  430 (577)
T ss_pred             ceEEeeccCCcCc
Confidence            9999999876554

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=98.99  E-value=2.4e-08  Score=56.71  Aligned_cols=79  Identities=14%  Similarity=0.126  Sum_probs=59.1

Q ss_pred             eEEEEEecCCCCcceE-EEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEe-cCCCcEEEEeCCCCce
Q psy14456          7 RDVCFIEDTSNKSSLL-ISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSG-SHDRTVRFWDLRTRGC   83 (93)
Q Consensus         7 ~~~~~~~~~~~~~~~~-~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~-~~~~~i~~~d~~~~~~   83 (93)
                      ..++|+|+    ++.+ ++.+ .++.+.+||.++++....+. +...+.++ |+|++..++++ ..++.+.+||++++.+
T Consensus       210 ~~i~~s~d----g~~~~~~~~-~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~  283 (300)
T TIGR03866       210 VGIKLTKD----GKTAFVALG-PANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKV  283 (300)
T ss_pred             cceEECCC----CCEEEEEcC-CCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcE
Confidence            35778888    5554 4444 47789999999887765543 34467788 99999988875 4689999999999998


Q ss_pred             eeEecCcc
Q psy14456         84 TNVLTPIT   91 (93)
Q Consensus        84 ~~~~~~~~   91 (93)
                      +..+....
T Consensus       284 ~~~~~~~~  291 (300)
T TIGR03866       284 IKSIKVGR  291 (300)
T ss_pred             EEEEEccc
Confidence            88776443

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1332|consensus

Probab=98.98  E-value=3.1e-09  Score=59.11  Aligned_cols=79  Identities=22%  Similarity=0.359  Sum_probs=61.2

Q ss_pred             CCccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCC--c-eeEEeeccccceEEE-EecC---C-----------C
Q psy14456          1 MHDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATG--Q-AFQALSGHSGHVLSL-YNWG---G-----------A   62 (93)
Q Consensus         1 ~h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~--~-~~~~~~~~~~~v~~~-~~~~---~-----------~   62 (93)
                      .|.+.|++++|.|.+   ..+++++++.||.|.+.+.+..  . .......|.-.++++ |.|.   +           .
T Consensus       100 ~h~~SVNsV~waphe---ygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~k  176 (299)
T KOG1332|consen  100 AHSASVNSVAWAPHE---YGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVK  176 (299)
T ss_pred             hhcccceeecccccc---cceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccc
Confidence            488999999999986   5566666667999999987654  1 123345788888888 8774   3           4


Q ss_pred             EEEEecCCCcEEEEeCCCCc
Q psy14456         63 TVLSGSHDRTVRFWDLRTRG   82 (93)
Q Consensus        63 ~~~s~~~~~~i~~~d~~~~~   82 (93)
                      .|++++.|..+++|+...++
T Consensus       177 rlvSgGcDn~VkiW~~~~~~  196 (299)
T KOG1332|consen  177 RLVSGGCDNLVKIWKFDSDS  196 (299)
T ss_pred             eeeccCCccceeeeecCCcc
Confidence            58999999999999988763

>KOG0268|consensus

Probab=98.98  E-value=1.1e-09  Score=63.63  Aligned_cols=79  Identities=25%  Similarity=0.393  Sum_probs=62.8

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEee-ccccceEEE-EecCCCEEEEecCCCcEEEEeCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALS-GHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLR   79 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~-~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~   79 (93)
                      |.++|.+++|+|.    ++-+++++ -|.+|++|..+.+...-... .....|.++ |+.|.+++++|+.|+.+++|...
T Consensus       271 hvsAV~dVdfspt----G~Efvsgs-yDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~  345 (433)
T KOG0268|consen  271 HVSAVMDVDFSPT----GQEFVSGS-YDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAK  345 (433)
T ss_pred             cceeEEEeccCCC----cchhcccc-ccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecc
Confidence            6679999999999    67777765 69999999998876544332 233567899 99999999999999999999876


Q ss_pred             CCceee
Q psy14456         80 TRGCTN   85 (93)
Q Consensus        80 ~~~~~~   85 (93)
                      ..+.+-
T Consensus       346 Aseklg  351 (433)
T KOG0268|consen  346 ASEKLG  351 (433)
T ss_pred             hhhhcC
Confidence            554433

>KOG4378|consensus

Probab=98.97  E-value=6.7e-09  Score=62.71  Aligned_cols=86  Identities=22%  Similarity=0.344  Sum_probs=70.0

Q ss_pred             CCccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCC
Q psy14456          1 MHDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLR   79 (93)
Q Consensus         1 ~h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~   79 (93)
                      .|.++...++|+|..   ..++++.| .|..|.+||........++. ...+...+ |.++|.+++.|...|.+..||+|
T Consensus       206 ~HsAP~~gicfspsn---e~l~vsVG-~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R  280 (673)
T KOG4378|consen  206 AHSAPCRGICFSPSN---EALLVSVG-YDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMR  280 (673)
T ss_pred             hccCCcCcceecCCc---cceEEEec-ccceEEEeecccccccceee-ecCCcceeeecCCceEEEeecCCceEEEEecc
Confidence            388999999999984   45677888 59999999998766666554 56788888 99999999999999999999999


Q ss_pred             CC-ceeeEecCcc
Q psy14456         80 TR-GCTNVLTPIT   91 (93)
Q Consensus        80 ~~-~~~~~~~~~~   91 (93)
                      .. .++.++..|.
T Consensus       281 ~~k~Pv~v~sah~  293 (673)
T KOG4378|consen  281 STKAPVAVRSAHD  293 (673)
T ss_pred             cCCCCceEeeecc
Confidence            54 4566666554

>KOG1063|consensus

Probab=98.97  E-value=5e-09  Score=64.95  Aligned_cols=75  Identities=20%  Similarity=0.318  Sum_probs=63.8

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCc----eeEEeeccccceEEE-EecCCCEEEEecCCCcEEEE
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQ----AFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFW   76 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~----~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~   76 (93)
                      |.-.|+.++|+|+    +.++++.+ +|.++.+|......    .....+.|+-.|.+. |+|++.+++|++.|.++++|
T Consensus       571 HsLTVT~l~FSpd----g~~LLsvs-RDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW  645 (764)
T KOG1063|consen  571 HSLTVTRLAFSPD----GRYLLSVS-RDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVW  645 (764)
T ss_pred             cceEEEEEEECCC----CcEEEEee-cCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEE
Confidence            7778999999999    78888887 89999999875432    123467898899999 99999999999999999999


Q ss_pred             eCCCC
Q psy14456         77 DLRTR   81 (93)
Q Consensus        77 d~~~~   81 (93)
                      .....
T Consensus       646 ~~~~~  650 (764)
T KOG1063|consen  646 EEPDL  650 (764)
T ss_pred             eccCc
Confidence            88776

>KOG2919|consensus

Probab=98.96  E-value=3.4e-09  Score=60.95  Aligned_cols=80  Identities=31%  Similarity=0.442  Sum_probs=61.6

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCC-CceeEEeecccc-ceEEE---EecCCCEEEEecCCCcEEEE
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCAT-GQAFQALSGHSG-HVLSL---YNWGGATVLSGSHDRTVRFW   76 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~-~~~~~~~~~~~~-~v~~~---~~~~~~~~~s~~~~~~i~~~   76 (93)
                      |.+.|+.+.|.++    ++.+++++-.+-.|..||++. +.++..+..|.. .-..|   ..|.++.|++|+.||.|++|
T Consensus       249 h~gGvThL~~~ed----Gn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vw  324 (406)
T KOG2919|consen  249 HGGGVTHLQWCED----GNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVW  324 (406)
T ss_pred             cCCCeeeEEeccC----cCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEE
Confidence            6789999999999    678888776789999999975 445666666654 22233   46678999999999999999


Q ss_pred             eCCC-Cceee
Q psy14456         77 DLRT-RGCTN   85 (93)
Q Consensus        77 d~~~-~~~~~   85 (93)
                      |+.. +....
T Consensus       325 dlk~~gn~~s  334 (406)
T KOG2919|consen  325 DLKDLGNEVS  334 (406)
T ss_pred             ecCCCCCccc
Confidence            9987 44333

>KOG0639|consensus

Probab=98.94  E-value=3.4e-09  Score=64.05  Aligned_cols=84  Identities=19%  Similarity=0.266  Sum_probs=66.1

Q ss_pred             cceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCcee--EEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          4 GTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAF--QALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~--~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      ..|..+...|+    ++.++.+| +-.++.|||+......  ..+....-....+ .+||.++.++++.||.|.+||++.
T Consensus       466 nyiRSckL~pd----grtLivGG-eastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhn  540 (705)
T KOG0639|consen  466 NYIRSCKLLPD----GRTLIVGG-EASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHN  540 (705)
T ss_pred             cceeeeEecCC----CceEEecc-ccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEccc
Confidence            45778888998    78888888 6999999998765432  2333333344566 799999999999999999999999


Q ss_pred             CceeeEecCccC
Q psy14456         81 RGCTNVLTPITV   92 (93)
Q Consensus        81 ~~~~~~~~~~~~   92 (93)
                      ...++.|.+|+.
T Consensus       541 q~~VrqfqGhtD  552 (705)
T KOG0639|consen  541 QTLVRQFQGHTD  552 (705)
T ss_pred             ceeeecccCCCC
Confidence            999999998863

>KOG1408|consensus

Probab=98.94  E-value=1.5e-08  Score=63.68  Aligned_cols=83  Identities=22%  Similarity=0.386  Sum_probs=71.1

Q ss_pred             cceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeec---cccceEEE-EecCCCEEEEecCCCcEEEEeCC
Q psy14456          4 GTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSG---HSGHVLSL-YNWGGATVLSGSHDRTVRFWDLR   79 (93)
Q Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~---~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~   79 (93)
                      ..+++++..|.    .+++++++ +|..|++|++..++..+.|++   |.+....+ ..|.+.++++.+.|+++.++|+-
T Consensus       597 tTlYDm~Vdp~----~k~v~t~c-QDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~  671 (1080)
T KOG1408|consen  597 TTLYDMAVDPT----SKLVVTVC-QDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFV  671 (1080)
T ss_pred             ceEEEeeeCCC----cceEEEEe-cccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEec
Confidence            46888999887    67777766 899999999999999888865   45566667 89999999999999999999999


Q ss_pred             CCceeeEecCcc
Q psy14456         80 TRGCTNVLTPIT   91 (93)
Q Consensus        80 ~~~~~~~~~~~~   91 (93)
                      +|+|.....+|.
T Consensus       672 sgEcvA~m~GHs  683 (1080)
T KOG1408|consen  672 SGECVAQMTGHS  683 (1080)
T ss_pred             cchhhhhhcCcc
Confidence            999988877774

>KOG4328|consensus

Probab=98.93  E-value=6.7e-09  Score=61.79  Aligned_cols=75  Identities=20%  Similarity=0.247  Sum_probs=59.1

Q ss_pred             CCccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCce----eEEeeccccceEEE-EecCCCEEEEecCCCcEEE
Q psy14456          1 MHDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQA----FQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRF   75 (93)
Q Consensus         1 ~h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~----~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~   75 (93)
                      +|...|+.+++.|..   ...+++++ .|++.+|||++....    +.....|.-.|.+. |+|.+-.++|-+.|..|++
T Consensus       320 lh~kKI~sv~~NP~~---p~~laT~s-~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv  395 (498)
T KOG4328|consen  320 LHKKKITSVALNPVC---PWFLATAS-LDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRV  395 (498)
T ss_pred             hhhcccceeecCCCC---chheeecc-cCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEE
Confidence            588899999999984   44566666 599999999875422    23335788899999 9997666888889999999


Q ss_pred             EeCC
Q psy14456         76 WDLR   79 (93)
Q Consensus        76 ~d~~   79 (93)
                      ||..
T Consensus       396 ~dss  399 (498)
T KOG4328|consen  396 FDSS  399 (498)
T ss_pred             eecc
Confidence            9983

>KOG2096|consensus

Probab=98.93  E-value=2.1e-08  Score=57.78  Aligned_cols=82  Identities=23%  Similarity=0.340  Sum_probs=57.8

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCC------------------------------------cee--
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATG------------------------------------QAF--   43 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~------------------------------------~~~--   43 (93)
                      |.+.|++++|+.+    ++++++++ .|+.|++|+++.-                                    ..+  
T Consensus        85 H~~~vt~~~FsSd----GK~lat~~-~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~v  159 (420)
T KOG2096|consen   85 HKKEVTDVAFSSD----GKKLATIS-GDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV  159 (420)
T ss_pred             cCCceeeeEEcCC----CceeEEEe-CCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence            7889999999999    89999987 5999999987521                                    011  


Q ss_pred             EEee---------------------ccccceEEE-EecCCCEEEEecCCCcEEEEeCCCCceeeEecC
Q psy14456         44 QALS---------------------GHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRGCTNVLTP   89 (93)
Q Consensus        44 ~~~~---------------------~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~   89 (93)
                      +.+.                     .|.-.+..+ ....+.++.+++.|..|.+|+++ |+.++.+..
T Consensus       160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idt  226 (420)
T KOG2096|consen  160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDT  226 (420)
T ss_pred             EEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecc
Confidence            1110                     122223334 34456678899999999999998 887777643

>KOG1274|consensus

Probab=98.92  E-value=1.6e-08  Score=64.28  Aligned_cols=83  Identities=20%  Similarity=0.275  Sum_probs=66.1

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeecc------c-cceE-EE-EecCCCEEEEecCCCc
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGH------S-GHVL-SL-YNWGGATVLSGSHDRT   72 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~------~-~~v~-~~-~~~~~~~~~s~~~~~~   72 (93)
                      |.++|.++.|+|.    +.+++++.. ||.|++|++..+.+.+.+.+-      . +.+. .+ |+|++..++..+.|+.
T Consensus       137 h~apVl~l~~~p~----~~fLAvss~-dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~  211 (933)
T KOG1274|consen  137 HDAPVLQLSYDPK----GNFLAVSSC-DGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNT  211 (933)
T ss_pred             cCCceeeeeEcCC----CCEEEEEec-CceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCe
Confidence            7899999999998    788887764 999999999988776655321      1 3344 44 9999888888889999


Q ss_pred             EEEEeCCCCceeeEecC
Q psy14456         73 VRFWDLRTRGCTNVLTP   89 (93)
Q Consensus        73 i~~~d~~~~~~~~~~~~   89 (93)
                      |.+++......+..++.
T Consensus       212 Vkvy~r~~we~~f~Lr~  228 (933)
T KOG1274|consen  212 VKVYSRKGWELQFKLRD  228 (933)
T ss_pred             EEEEccCCceeheeecc
Confidence            99999988887777654

>KOG0307|consensus

Probab=98.91  E-value=1.5e-09  Score=69.83  Aligned_cols=84  Identities=25%  Similarity=0.310  Sum_probs=63.0

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEe--eccccceEEE-EecC-CCEEEEecCCCcEEEEe
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQAL--SGHSGHVLSL-YNWG-GATVLSGSHDRTVRFWD   77 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~--~~~~~~v~~~-~~~~-~~~~~s~~~~~~i~~~d   77 (93)
                      |++.|..++|.+..   ++.+++++ .+|.|.+||++.-+.-...  ....+.|.++ |+.. ...|++++.++...+||
T Consensus       115 h~G~V~gLDfN~~q---~nlLASGa-~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWD  190 (1049)
T KOG0307|consen  115 HTGPVLGLDFNPFQ---GNLLASGA-DDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWD  190 (1049)
T ss_pred             cCCceeeeeccccC---CceeeccC-CCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceecc
Confidence            89999999999983   34555555 6999999999865443333  2345788899 8875 45677888999999999


Q ss_pred             CCCCceeeEecC
Q psy14456         78 LRTRGCTNVLTP   89 (93)
Q Consensus        78 ~~~~~~~~~~~~   89 (93)
                      ++..+.+..+..
T Consensus       191 lr~~~pii~ls~  202 (1049)
T KOG0307|consen  191 LRKKKPIIKLSD  202 (1049)
T ss_pred             ccCCCccccccc
Confidence            998876655543

>KOG0307|consensus

Probab=98.91  E-value=4.6e-09  Score=67.69  Aligned_cols=83  Identities=22%  Similarity=0.317  Sum_probs=65.2

Q ss_pred             ceeEEEEEecCCCCcceEEEee-eCCCeEEEEeCCCC-ceeEEeeccccceEEE-Eec-CCCEEEEecCCCcEEEEeCCC
Q psy14456          5 TVRDVCFIEDTSNKSSLLISGG-AGDCKIYVTDCATG-QAFQALSGHSGHVLSL-YNW-GGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         5 ~v~~~~~~~~~~~~~~~~~~~g-~~~~~v~~~~~~~~-~~~~~~~~~~~~v~~~-~~~-~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      .+..+.|+|+..  .+.+++++ .+.-.|.+||++-. ..++.+.+|...+.++ |++ |..++++++.|+.+.+|+.++
T Consensus       208 ~~S~l~WhP~~a--Tql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~t  285 (1049)
T KOG0307|consen  208 HCSVLAWHPDHA--TQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNT  285 (1049)
T ss_pred             ceeeeeeCCCCc--eeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCC
Confidence            377899999853  34455554 23456889998754 5577788999999999 988 568999999999999999999


Q ss_pred             CceeeEecC
Q psy14456         81 RGCTNVLTP   89 (93)
Q Consensus        81 ~~~~~~~~~   89 (93)
                      ++.+..+..
T Consensus       286 gEvl~~~p~  294 (1049)
T KOG0307|consen  286 GEVLGELPA  294 (1049)
T ss_pred             ceEeeecCC
Confidence            988777643

>KOG1009|consensus

Probab=98.91  E-value=1.2e-08  Score=59.95  Aligned_cols=72  Identities=22%  Similarity=0.326  Sum_probs=59.0

Q ss_pred             cceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCc---------eeEEeeccccceEEE-EecCCCEEEEecCCCcE
Q psy14456          4 GTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQ---------AFQALSGHSGHVLSL-YNWGGATVLSGSHDRTV   73 (93)
Q Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~---------~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i   73 (93)
                      .+|..+.|+++.   .++++++|. |..|++|.++.+.         -+..+..|...++++ |++++.++++|+.++.+
T Consensus        14 ~pv~s~dfq~n~---~~~laT~G~-D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v   89 (434)
T KOG1009|consen   14 EPVYSVDFQKNS---LNKLATAGG-DKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEV   89 (434)
T ss_pred             CceEEEEeccCc---ccceecccC-ccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceE
Confidence            578899998874   347888885 9999999876431         134556789999999 99999999999999999


Q ss_pred             EEEeCC
Q psy14456         74 RFWDLR   79 (93)
Q Consensus        74 ~~~d~~   79 (93)
                      .+|...
T Consensus        90 ~lWk~~   95 (434)
T KOG1009|consen   90 FLWKQG   95 (434)
T ss_pred             EEEEec
Confidence            999765

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=98.90  E-value=1.1e-07  Score=55.28  Aligned_cols=85  Identities=36%  Similarity=0.546  Sum_probs=68.5

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCC-EEEEecCCCcEEEEeCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGA-TVLSGSHDRTVRFWDLR   79 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~-~~~s~~~~~~i~~~d~~   79 (93)
                      |...|..++|+|+    +..++.++..++.+++|+...+..+..+.+|...+.++ |.+++. .+++++.|+.+.+||.+
T Consensus       154 ~~~~v~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~  229 (466)
T COG2319         154 HSESVTSLAFSPD----GKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLS  229 (466)
T ss_pred             CcccEEEEEECCC----CCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECC
Confidence            6788999999998    55566554139999999999888888888899999999 998877 55566899999999988


Q ss_pred             CCceee-EecCc
Q psy14456         80 TRGCTN-VLTPI   90 (93)
Q Consensus        80 ~~~~~~-~~~~~   90 (93)
                      .+.... .+..+
T Consensus       230 ~~~~~~~~~~~~  241 (466)
T COG2319         230 TGKLLRSTLSGH  241 (466)
T ss_pred             CCcEEeeecCCC
Confidence            777766 45444

>KOG0642|consensus

Probab=98.89  E-value=3.7e-09  Score=64.04  Aligned_cols=73  Identities=26%  Similarity=0.472  Sum_probs=59.1

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCC--------CceeEEeeccccceEEE-EecCCCEEEEecCCCc
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCAT--------GQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRT   72 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~--------~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~   72 (93)
                      |..-+..+.|+|.    ..-++++ +.++.+.+|+++.        -+++.+|.+|.++|.|+ +.+.+..+++|+.|++
T Consensus       293 ~~d~ir~l~~~~s----ep~lit~-sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~  367 (577)
T KOG0642|consen  293 HDDCIRALAFHPS----EPVLITA-SEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT  367 (577)
T ss_pred             chhhhhhhhcCCC----CCeEEEe-ccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence            3455677778776    4556665 4899999999832        14678999999999999 9999999999999999


Q ss_pred             EEEEeCC
Q psy14456         73 VRFWDLR   79 (93)
Q Consensus        73 i~~~d~~   79 (93)
                      |++|++.
T Consensus       368 I~~w~~p  374 (577)
T KOG0642|consen  368 IRCWNLP  374 (577)
T ss_pred             eeeeccC
Confidence            9999665

>KOG2445|consensus

Probab=98.89  E-value=2e-08  Score=57.43  Aligned_cols=76  Identities=22%  Similarity=0.442  Sum_probs=58.4

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCC--------------------ceeEEeeccccceEEE-EecC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATG--------------------QAFQALSGHSGHVLSL-YNWG   60 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~--------------------~~~~~~~~~~~~v~~~-~~~~   60 (93)
                      |+.+|++++|.|.--. .-.+++.++.|| |+||.+...                    +.+..+..|++.+..+ |+-.
T Consensus       222 ~~dpI~di~wAPn~Gr-~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmt  299 (361)
T KOG2445|consen  222 HTDPIRDISWAPNIGR-SYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMT  299 (361)
T ss_pred             CCCcceeeeeccccCC-ceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeee
Confidence            6889999999997311 223455555799 999987621                    2344567899999999 9999


Q ss_pred             CCEEEEecCCCcEEEEeCC
Q psy14456         61 GATVLSGSHDRTVRFWDLR   79 (93)
Q Consensus        61 ~~~~~s~~~~~~i~~~d~~   79 (93)
                      |..|.+.+.||.+++|...
T Consensus       300 GtiLsStGdDG~VRLWkan  318 (361)
T KOG2445|consen  300 GTILSSTGDDGCVRLWKAN  318 (361)
T ss_pred             eeEEeecCCCceeeehhhh
Confidence            9999999999999999644

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.89  E-value=1.1e-08  Score=41.67  Aligned_cols=30  Identities=30%  Similarity=0.530  Sum_probs=27.0

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEe
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTD   36 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~   36 (93)
                      |++.|++++|+|+    +..+++++ .|+.|++||
T Consensus        10 h~~~i~~i~~~~~----~~~~~s~~-~D~~i~vwd   39 (39)
T PF00400_consen   10 HSSSINSIAWSPD----GNFLASGS-SDGTIRVWD   39 (39)
T ss_dssp             SSSSEEEEEEETT----SSEEEEEE-TTSEEEEEE
T ss_pred             CCCcEEEEEEecc----cccceeeC-CCCEEEEEC
Confidence            7899999999998    78888877 699999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1188|consensus

Probab=98.88  E-value=1.1e-08  Score=59.00  Aligned_cols=62  Identities=24%  Similarity=0.369  Sum_probs=52.4

Q ss_pred             eEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-Eec--CCCEEEEecCCCcEEEEeCCCCce
Q psy14456         21 LLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNW--GGATVLSGSHDRTVRFWDLRTRGC   83 (93)
Q Consensus        21 ~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~--~~~~~~s~~~~~~i~~~d~~~~~~   83 (93)
                      .++++- .+|.+++||..+++.+..++++...+..+ |..  .+..+.+|+.||.|++||+|....
T Consensus        42 ~vav~l-Sngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e  106 (376)
T KOG1188|consen   42 AVAVSL-SNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAE  106 (376)
T ss_pred             eEEEEe-cCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchh
Confidence            355544 59999999999999999999998888888 766  577899999999999999997654

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=98.88  E-value=1.7e-07  Score=53.25  Aligned_cols=79  Identities=22%  Similarity=0.261  Sum_probs=58.2

Q ss_pred             ceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEE-EecCCCcEEEEeCCCCc
Q psy14456          5 TVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVL-SGSHDRTVRFWDLRTRG   82 (93)
Q Consensus         5 ~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~-s~~~~~~i~~~d~~~~~   82 (93)
                      .+..++|+|+    +..+++++..++.+.+||..+++....+..+.. +..+ ++++++.++ ++..++.+.+||++++.
T Consensus        32 ~~~~l~~~~d----g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~  106 (300)
T TIGR03866        32 RPRGITLSKD----GKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRK  106 (300)
T ss_pred             CCCceEECCC----CCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCe
Confidence            3567899988    666654444689999999998887776654443 3456 899888665 45568999999999877


Q ss_pred             eeeEec
Q psy14456         83 CTNVLT   88 (93)
Q Consensus        83 ~~~~~~   88 (93)
                      .+..+.
T Consensus       107 ~~~~~~  112 (300)
T TIGR03866       107 VLAEIP  112 (300)
T ss_pred             EEeEee
Confidence            666554

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1408|consensus

Probab=98.87  E-value=1.2e-08  Score=64.00  Aligned_cols=74  Identities=22%  Similarity=0.355  Sum_probs=65.5

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      |.+..--+...|.    +.+++++++ |.++.++|.-+++++..+.+|...|+.+ |.++...+++.+.|+.|.+|.+..
T Consensus       640 ~eG~lIKv~lDPS----giY~atScs-dktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  640 HEGDLIKVILDPS----GIYLATSCS-DKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             CCCceEEEEECCC----ccEEEEeec-CCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence            3455666777777    788888885 9999999999999999999999999999 999999999999999999998764

>KOG2048|consensus

Probab=98.85  E-value=3.5e-08  Score=61.08  Aligned_cols=82  Identities=21%  Similarity=0.257  Sum_probs=61.0

Q ss_pred             ccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEee-----ccc-c--ceEEE-EecCCCEEEEecCCCcE
Q psy14456          3 DGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALS-----GHS-G--HVLSL-YNWGGATVLSGSHDRTV   73 (93)
Q Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~-----~~~-~--~v~~~-~~~~~~~~~s~~~~~~i   73 (93)
                      +++|.+++|+|+    +..+++++ .||.|++||..++..+....     ..+ .  -+.++ |- ....+++|...|.+
T Consensus       154 ~sRvLslsw~~~----~~~i~~Gs-~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L-rd~tI~sgDS~G~V  227 (691)
T KOG2048|consen  154 KSRVLSLSWNPT----GTKIAGGS-IDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL-RDSTIASGDSAGTV  227 (691)
T ss_pred             cceEEEEEecCC----ccEEEecc-cCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEe-ecCcEEEecCCceE
Confidence            589999999998    66677755 69999999999887765221     111 1  23344 33 56789999999999


Q ss_pred             EEEeCCCCceeeEecCc
Q psy14456         74 RFWDLRTRGCTNVLTPI   90 (93)
Q Consensus        74 ~~~d~~~~~~~~~~~~~   90 (93)
                      .+||...+..++.+..|
T Consensus       228 ~FWd~~~gTLiqS~~~h  244 (691)
T KOG2048|consen  228 TFWDSIFGTLIQSHSCH  244 (691)
T ss_pred             EEEcccCcchhhhhhhh
Confidence            99999998877776654

>KOG1188|consensus

Probab=98.85  E-value=2.1e-08  Score=57.92  Aligned_cols=35  Identities=29%  Similarity=0.429  Sum_probs=31.1

Q ss_pred             eccccceEEE-Eec-CCCEEEEecCCCcEEEEeCCCC
Q psy14456         47 SGHSGHVLSL-YNW-GGATVLSGSHDRTVRFWDLRTR   81 (93)
Q Consensus        47 ~~~~~~v~~~-~~~-~~~~~~s~~~~~~i~~~d~~~~   81 (93)
                      ..|...|+++ |+| +++++++|+.||.+.++|+...
T Consensus       162 eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d  198 (376)
T KOG1188|consen  162 ESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD  198 (376)
T ss_pred             hhccCcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence            3588899999 999 7889999999999999998864

>KOG1524|consensus

Probab=98.83  E-value=1.7e-08  Score=61.59  Aligned_cols=83  Identities=20%  Similarity=0.289  Sum_probs=62.9

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCC----------------------------------------Cc
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCAT----------------------------------------GQ   41 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~----------------------------------------~~   41 (93)
                      |.+.+.+-.|+|+    +.-++++| +||.|++|.-.-                                        ..
T Consensus       103 H~~A~~~gRW~~d----GtgLlt~G-EDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~  177 (737)
T KOG1524|consen  103 HAAAISSGRWSPD----GAGLLTAG-EDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAANS  177 (737)
T ss_pred             hhhhhhhcccCCC----Cceeeeec-CCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEecCCeEEEeeccccc
Confidence            7788888889998    66788888 699999996310                                        01


Q ss_pred             eeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCCCceeeEecCc
Q psy14456         42 AFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRGCTNVLTPI   90 (93)
Q Consensus        42 ~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~   90 (93)
                      .+-.++.|.+-+.++ |++...++++|+.|-..++||-. |+.+..-..|
T Consensus       178 k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~  226 (737)
T KOG1524|consen  178 KIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAE  226 (737)
T ss_pred             ceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChh
Confidence            234556789999999 99999999999999999999964 4444443333

>KOG1063|consensus

Probab=98.83  E-value=3.3e-08  Score=61.50  Aligned_cols=76  Identities=28%  Similarity=0.318  Sum_probs=63.7

Q ss_pred             CccceeEEEEEecCCCCcceEEEeee----CCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEE
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGA----GDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFW   76 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~----~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~   76 (93)
                      |.-.|++++.+|+    ++++++++.    +...|++|+.......+.+.+|.-.|+.+ |+|++.+|++.+.|+++.+|
T Consensus       524 HGyEv~~l~~s~~----gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~  599 (764)
T KOG1063|consen  524 HGYEVYALAISPT----GNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLY  599 (764)
T ss_pred             CceeEEEEEecCC----CCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEee
Confidence            6678999999998    777777651    13347899988877778899999999999 99999999999999999999


Q ss_pred             eCCCC
Q psy14456         77 DLRTR   81 (93)
Q Consensus        77 d~~~~   81 (93)
                      .....
T Consensus       600 ~~~~~  604 (764)
T KOG1063|consen  600 EVQED  604 (764)
T ss_pred             eeecc
Confidence            87543

>KOG4227|consensus

Probab=98.83  E-value=3.8e-08  Score=58.26  Aligned_cols=82  Identities=23%  Similarity=0.343  Sum_probs=68.1

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCC------CceeEEe-eccccceEEE-EecCCCEEEEecCCCcE
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCAT------GQAFQAL-SGHSGHVLSL-YNWGGATVLSGSHDRTV   73 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~------~~~~~~~-~~~~~~v~~~-~~~~~~~~~s~~~~~~i   73 (93)
                      |++-|.++.|+.+    +++++++| .|-.+++|.++.      .+++... ..|.+.|.++ |......+.+|..++++
T Consensus        55 H~GCiNAlqFS~N----~~~L~SGG-DD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V  129 (609)
T KOG4227|consen   55 HTGCINALQFSHN----DRFLASGG-DDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV  129 (609)
T ss_pred             hccccceeeeccC----CeEEeecC-CcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence            7788999999987    78888888 599999999752      2444433 2466899999 99999999999999999


Q ss_pred             EEEeCCCCceeeEec
Q psy14456         74 RFWDLRTRGCTNVLT   88 (93)
Q Consensus        74 ~~~d~~~~~~~~~~~   88 (93)
                      ++.|+++.+.+.++.
T Consensus       130 I~HDiEt~qsi~V~~  144 (609)
T KOG4227|consen  130 IKHDIETKQSIYVAN  144 (609)
T ss_pred             Eeeecccceeeeeec
Confidence            999999998887764

>KOG2919|consensus

Probab=98.82  E-value=4.1e-08  Score=56.67  Aligned_cols=74  Identities=24%  Similarity=0.408  Sum_probs=63.9

Q ss_pred             cceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEec-CCCcEEEEeCCCC
Q psy14456          4 GTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGS-HDRTVRFWDLRTR   81 (93)
Q Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~-~~~~i~~~d~~~~   81 (93)
                      +-+.|++|+|.    ....++.|+-...+-+|.-..+.++..+-+|.+.|+.+ |.++|+.+++|+ .+-.|.+||+|..
T Consensus       208 giisc~a~sP~----~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~  283 (406)
T KOG2919|consen  208 GIISCFAFSPM----DSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYS  283 (406)
T ss_pred             ceeeeeeccCC----CCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhc
Confidence            55889999998    56566667678889999888888899899999999999 999999999887 6789999999964

>KOG4714|consensus

Probab=98.82  E-value=3.7e-09  Score=59.26  Aligned_cols=72  Identities=18%  Similarity=0.294  Sum_probs=60.1

Q ss_pred             ceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCcee-EEeeccccceEEE-Eec-CCCEEEEecCCCcEEEEeCCC
Q psy14456          5 TVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAF-QALSGHSGHVLSL-YNW-GGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         5 ~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~-~~~~~~~~~v~~~-~~~-~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      .|.+++-+|.    .+.++++|.++|.+.+||.+..... -.++.|+.++.-+ |+| ++..+++++.||.+..||..+
T Consensus       181 ~v~~l~~hp~----qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  181 AVTALCSHPA----QQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             cchhhhCCcc----cccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            4778888887    6777777878999999999876443 3457899999999 999 688999999999999999874

>KOG1273|consensus

Probab=98.82  E-value=8.9e-08  Score=55.20  Aligned_cols=71  Identities=14%  Similarity=0.259  Sum_probs=52.5

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecC-CCEEEEecCCCcEEEEeC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWG-GATVLSGSHDRTVRFWDL   78 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~-~~~~~s~~~~~~i~~~d~   78 (93)
                      |..+|++++|+++    +++++++. +|..+.+||+..|.+++.+. -.++|... |+|. .++++..-.+..-.+-++
T Consensus        64 H~~pi~sl~WS~d----gr~LltsS-~D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~  136 (405)
T KOG1273|consen   64 HVRPITSLCWSRD----GRKLLTSS-RDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDF  136 (405)
T ss_pred             cccceeEEEecCC----CCEeeeec-CCceeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEe
Confidence            7889999999999    88999886 79999999999999888775 56677777 8773 344444434433333333

>KOG4378|consensus

Probab=98.80  E-value=3.7e-08  Score=59.63  Aligned_cols=77  Identities=17%  Similarity=0.244  Sum_probs=61.7

Q ss_pred             cceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEe-eccccceEEE-Eec-CCCEEEEecCCCcEEEEeCCC
Q psy14456          4 GTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQAL-SGHSGHVLSL-YNW-GGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~-~~~~~~v~~~-~~~-~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      ..|.-+.|+|.    .+.++.+.+.+|.|.+||+....++..+ ..|.++...+ |+| ...++++.+.|..|.+||.+.
T Consensus       165 qsvRll~ys~s----kr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s  240 (673)
T KOG4378|consen  165 QSVRLLRYSPS----KRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRS  240 (673)
T ss_pred             CeEEEeecccc----cceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccc
Confidence            35668899998    5555555557999999999988877655 5788898889 999 566788999999999999996


Q ss_pred             Ccee
Q psy14456         81 RGCT   84 (93)
Q Consensus        81 ~~~~   84 (93)
                      ....
T Consensus       241 ~~s~  244 (673)
T KOG4378|consen  241 QAST  244 (673)
T ss_pred             cccc
Confidence            5443

>KOG2055|consensus

Probab=98.80  E-value=1.4e-07  Score=56.50  Aligned_cols=73  Identities=23%  Similarity=0.386  Sum_probs=57.8

Q ss_pred             ccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccc-eEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          3 DGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGH-VLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~-v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      .+.|..+.|+.+    +..++++|. +|.|.+||++...+++.+....+. -..+ .++++.++++|+..|.+++||..+
T Consensus       344 eG~v~~~~fsSd----sk~l~~~~~-~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s  418 (514)
T KOG2055|consen  344 EGVVSDFTFSSD----SKELLASGG-TGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNS  418 (514)
T ss_pred             ccEEeeEEEecC----CcEEEEEcC-CceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccch
Confidence            467899999977    677888774 999999999999999888632221 1233 467899999999999999999764

>KOG4547|consensus

Probab=98.80  E-value=1.3e-07  Score=57.62  Aligned_cols=85  Identities=22%  Similarity=0.234  Sum_probs=72.8

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      |-+.|.++.++..    ..-+.++|. |+.+..|+....+.++.+...+..+.++ .++++..+++++  ++|.+||+++
T Consensus       101 h~~~v~~~~~~~~----~~ciyS~~a-d~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~  173 (541)
T KOG4547|consen  101 HYGNVNEILDAQR----LGCIYSVGA-DLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIET  173 (541)
T ss_pred             CCCcceeeecccc----cCceEecCC-ceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccC
Confidence            5677888887766    566788884 9999999999999999998888888888 899988888775  6999999999


Q ss_pred             CceeeEecCccCC
Q psy14456         81 RGCTNVLTPITVP   93 (93)
Q Consensus        81 ~~~~~~~~~~~~~   93 (93)
                      ++.+..|.+|..|
T Consensus       174 kevv~~ftgh~s~  186 (541)
T KOG4547|consen  174 KEVVITFTGHGSP  186 (541)
T ss_pred             ceEEEEecCCCcc
Confidence            9999999999754

>KOG0270|consensus

Probab=98.77  E-value=2.3e-07  Score=55.24  Aligned_cols=86  Identities=20%  Similarity=0.290  Sum_probs=63.8

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCce-eEEeeccccceEEE-Eec-CCCEEEEecCCCcEEEEeC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQA-FQALSGHSGHVLSL-YNW-GGATVLSGSHDRTVRFWDL   78 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~-~~~~~~~~~~v~~~-~~~-~~~~~~s~~~~~~i~~~d~   78 (93)
                      |++.|.++.|+|..   ...+++ |+.|+++.+.|.+.... -..++ -.+.|-.+ |.+ ....++.+..||.++-+|+
T Consensus       285 ~~k~Vq~l~wh~~~---p~~LLs-Gs~D~~V~l~D~R~~~~s~~~wk-~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~  359 (463)
T KOG0270|consen  285 HGKKVQTLEWHPYE---PSVLLS-GSYDGTVALKDCRDPSNSGKEWK-FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDI  359 (463)
T ss_pred             cCCceeEEEecCCC---ceEEEe-ccccceEEeeeccCccccCceEE-eccceEEEEecCCCceeEEEecCCceEEeeec
Confidence            78899999999984   455555 55799999999985322 22232 34556667 877 4567778889999999999


Q ss_pred             CCC-ceeeEecCccC
Q psy14456         79 RTR-GCTNVLTPITV   92 (93)
Q Consensus        79 ~~~-~~~~~~~~~~~   92 (93)
                      |+. +++..+..|..
T Consensus       360 R~~~~~vwt~~AHd~  374 (463)
T KOG0270|consen  360 RNPGKPVWTLKAHDD  374 (463)
T ss_pred             CCCCCceeEEEeccC
Confidence            975 78888877754

>KOG0650|consensus

Probab=98.76  E-value=1.2e-07  Score=58.43  Aligned_cols=71  Identities=23%  Similarity=0.296  Sum_probs=54.3

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCC-EEEEecCCCcEEEEeC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGA-TVLSGSHDRTVRFWDL   78 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~-~~~s~~~~~~i~~~d~   78 (93)
                      |++.|.+++..|.    +.++++++ .||+|++|.+.++.|+..+. -.+.|.++ |+|.+. .++.++.+..+.+.+.
T Consensus       399 Htg~Vr~iSvdp~----G~wlasGs-dDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp  471 (733)
T KOG0650|consen  399 HTGLVRSISVDPS----GEWLASGS-DDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIVNP  471 (733)
T ss_pred             cCCeEEEEEecCC----cceeeecC-CCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEEeCc
Confidence            8999999999997    78888766 69999999999999998875 45688999 999654 2333444444555443

>KOG1036|consensus

Probab=98.75  E-value=3.2e-08  Score=56.41  Aligned_cols=60  Identities=18%  Similarity=0.283  Sum_probs=52.9

Q ss_pred             ceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecC
Q psy14456          5 TVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSH   69 (93)
Q Consensus         5 ~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~   69 (93)
                      +|.+++|+|-    ...++++|+ ||.|.+||+...+.++.+......|..+ |+.+|..|+.++.
T Consensus       234 PVNai~Fhp~----~~tfaTgGs-DG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  234 PVNAIAFHPI----HGTFATGGS-DGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             EeceeEeccc----cceEEecCC-CceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence            6899999997    678999996 9999999999998888887777778899 9999999987753

>KOG3881|consensus

Probab=98.75  E-value=4.6e-08  Score=57.34  Aligned_cols=76  Identities=20%  Similarity=0.296  Sum_probs=64.2

Q ss_pred             cceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEE-eeccccceEEE-EecCCCEEEEecCCCcEEEEeCCCC
Q psy14456          4 GTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQA-LSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTR   81 (93)
Q Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~-~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~   81 (93)
                      .+++++...|.    ++.++++. ..+.+..+|.+.+..+.. +++..+.+..+ .+|...++++++.|+.++++|+++.
T Consensus       248 ~~is~~~l~p~----gn~Iy~gn-~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktr  322 (412)
T KOG3881|consen  248 NPISSTGLTPS----GNFIYTGN-TKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTR  322 (412)
T ss_pred             CcceeeeecCC----CcEEEEec-ccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccc
Confidence            46777777777    67777765 599999999999988765 78899999999 9999999999999999999999985


Q ss_pred             cee
Q psy14456         82 GCT   84 (93)
Q Consensus        82 ~~~   84 (93)
                      ..+
T Consensus       323 kll  325 (412)
T KOG3881|consen  323 KLL  325 (412)
T ss_pred             hhh
Confidence            443

>KOG0280|consensus

Probab=98.72  E-value=1.7e-07  Score=53.45  Aligned_cols=75  Identities=21%  Similarity=0.259  Sum_probs=55.8

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCC-CCceeEE-eeccccceEEE-Eec-CCCEEEEecCCCcEEEEe
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCA-TGQAFQA-LSGHSGHVLSL-YNW-GGATVLSGSHDRTVRFWD   77 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~-~~~~~~~-~~~~~~~v~~~-~~~-~~~~~~s~~~~~~i~~~d   77 (93)
                      |.-......|+..+   .+.+.++| .|+.+..||++ .+..+.. .+.|...|.++ -+| .+..++||+.|..+++||
T Consensus       164 He~E~Wta~f~~~~---pnlvytGg-DD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~D  239 (339)
T KOG0280|consen  164 HEFEAWTAKFSDKE---PNLVYTGG-DDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLD  239 (339)
T ss_pred             cceeeeeeecccCC---CceEEecC-CCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeee
Confidence            44455566666553   45566665 69999999998 3444433 56788999999 555 788999999999999999


Q ss_pred             CCC
Q psy14456         78 LRT   80 (93)
Q Consensus        78 ~~~   80 (93)
                      .|.
T Consensus       240 tRn  242 (339)
T KOG0280|consen  240 TRN  242 (339)
T ss_pred             hhc
Confidence            984

>KOG2048|consensus

Probab=98.69  E-value=6.4e-07  Score=55.76  Aligned_cols=79  Identities=23%  Similarity=0.452  Sum_probs=62.0

Q ss_pred             cceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeE--EeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          4 GTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQ--ALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~--~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      ++|..++.+|.    +..+ +.|++||.+..++...+....  .+.-.++.+.++ |++++..+++|+.|+.|++||..+
T Consensus       111 g~IWsiai~p~----~~~l-~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~  185 (691)
T KOG2048|consen  111 GAIWSIAINPE----NTIL-AIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKS  185 (691)
T ss_pred             cceeEEEeCCc----cceE-EeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCC
Confidence            57888898887    4444 445579988887777776543  334456899999 999999999999999999999999


Q ss_pred             CceeeEe
Q psy14456         81 RGCTNVL   87 (93)
Q Consensus        81 ~~~~~~~   87 (93)
                      +..+...
T Consensus       186 ~~t~~~~  192 (691)
T KOG2048|consen  186 GQTLHII  192 (691)
T ss_pred             CceEEEe
Confidence            9877633

>KOG1963|consensus

Probab=98.69  E-value=2.6e-07  Score=58.56  Aligned_cols=76  Identities=26%  Similarity=0.364  Sum_probs=62.9

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCC--C--ceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEE
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCAT--G--QAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFW   76 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~--~--~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~   76 (93)
                      |+-.++|.+++|.    ++.++++. .||.|.+|.-..  +  .....+.-|.++|.++ |+++|.++++|+..+-+-+|
T Consensus       204 Htf~~t~~~~spn----~~~~Aa~d-~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~W  278 (792)
T KOG1963|consen  204 HTFNITCVALSPN----ERYLAAGD-SDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLW  278 (792)
T ss_pred             hcccceeEEeccc----cceEEEec-cCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEE
Confidence            6667899999998    67777766 599999997432  1  2245667899999999 99999999999999999999


Q ss_pred             eCCCCc
Q psy14456         77 DLRTRG   82 (93)
Q Consensus        77 d~~~~~   82 (93)
                      .+.++.
T Consensus       279 q~~T~~  284 (792)
T KOG1963|consen  279 QLETGK  284 (792)
T ss_pred             eecCCC
Confidence            999876

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.69  E-value=6.2e-07  Score=55.04  Aligned_cols=73  Identities=18%  Similarity=0.169  Sum_probs=56.8

Q ss_pred             ccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCCC
Q psy14456          3 DGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTR   81 (93)
Q Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~   81 (93)
                      ++.|.|++++|+    .++++.++ .||.|.+||...+.....  ...-....+ |+|++..++.|+..|.+.+||..-+
T Consensus       259 ~s~v~~ca~sp~----E~kLvlGC-~DgSiiLyD~~~~~t~~~--ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  259 PSQVICCARSPS----EDKLVLGC-EDGSIILYDTTRGVTLLA--KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             CCcceEEecCcc----cceEEEEe-cCCeEEEEEcCCCeeeee--eecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            467899999998    67777766 699999999877644322  222334567 9999999999999999999998754


Q ss_pred             c
Q psy14456         82 G   82 (93)
Q Consensus        82 ~   82 (93)
                      .
T Consensus       332 p  332 (545)
T PF11768_consen  332 P  332 (545)
T ss_pred             c
Confidence            3

>KOG0974|consensus

Probab=98.68  E-value=2.1e-07  Score=59.94  Aligned_cols=81  Identities=19%  Similarity=0.248  Sum_probs=65.1

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeE-EeeccccceEEE-EecCCCEEEEecCCCcEEEEeCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQ-ALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLR   79 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~-~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~   79 (93)
                      |.+.+..+.|+.+    +.++++.. +|..+++|++++.+... ...+|.+.+..+ |.+.  .+++++.|.+.++|+..
T Consensus       174 HeG~iF~i~~s~d----g~~i~s~S-dDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~  246 (967)
T KOG0974|consen  174 HEGSIFSIVTSLD----GRYIASVS-DDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN  246 (967)
T ss_pred             cCCceEEEEEccC----CcEEEEEe-cCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecc
Confidence            8899999999988    78888876 69999999999887754 667899999888 7766  89999999999999543


Q ss_pred             CCceeeEecCc
Q psy14456         80 TRGCTNVLTPI   90 (93)
Q Consensus        80 ~~~~~~~~~~~   90 (93)
                       +..+..+.+|
T Consensus       247 -~~~l~~y~~h  256 (967)
T KOG0974|consen  247 -GTQLEVYDEH  256 (967)
T ss_pred             -cceehhhhhh
Confidence             3333344433

>KOG2139|consensus

Probab=98.68  E-value=2.6e-07  Score=54.14  Aligned_cols=72  Identities=22%  Similarity=0.402  Sum_probs=57.2

Q ss_pred             cceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCC
Q psy14456          4 GTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLR   79 (93)
Q Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~   79 (93)
                      .+|+.+.|.++    +..++++.-.+..+.+||..++..+....-.-+.+.-+ |+|++.+++.+..|+..++|+..
T Consensus       196 ~pVtsmqwn~d----gt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~  268 (445)
T KOG2139|consen  196 NPVTSMQWNED----GTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQEN  268 (445)
T ss_pred             ceeeEEEEcCC----CCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhc
Confidence            57999999999    56667666569999999999887654332234566677 99999999999999999999433

>KOG2695|consensus

Probab=98.67  E-value=7.7e-08  Score=55.98  Aligned_cols=83  Identities=18%  Similarity=0.243  Sum_probs=62.8

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCce---eEEeeccccceEEE---EecCCCEEEEecCCCcEEE
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQA---FQALSGHSGHVLSL---YNWGGATVLSGSHDRTVRF   75 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~---~~~~~~~~~~v~~~---~~~~~~~~~s~~~~~~i~~   75 (93)
                      |.+.|+++..-...   .+++++++ .+|.|.+||.+-.++   +....+|.+...-+   .++....+++++.|...++
T Consensus       297 h~Ssvtslq~Lq~s---~q~LmaS~-M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRi  372 (425)
T KOG2695|consen  297 HDSSVTSLQILQFS---QQKLMASD-MTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRI  372 (425)
T ss_pred             cCcchhhhhhhccc---cceEeecc-CcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEE
Confidence            66777777765522   67788887 499999999987666   77778887644333   4556678888999999999


Q ss_pred             EeCCCCceeeEec
Q psy14456         76 WDLRTRGCTNVLT   88 (93)
Q Consensus        76 ~d~~~~~~~~~~~   88 (93)
                      |.++.+..+.++.
T Consensus       373 Wsl~~ghLl~tip  385 (425)
T KOG2695|consen  373 WSLDSGHLLCTIP  385 (425)
T ss_pred             EecccCceeeccC
Confidence            9999987766653

>KOG1587|consensus

Probab=98.66  E-value=7.3e-08  Score=59.61  Aligned_cols=76  Identities=16%  Similarity=0.117  Sum_probs=62.3

Q ss_pred             CCccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCC-CCceeEEeeccccceEEE-Eec-CCCEEEEecCCCcEEEEe
Q psy14456          1 MHDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCA-TGQAFQALSGHSGHVLSL-YNW-GGATVLSGSHDRTVRFWD   77 (93)
Q Consensus         1 ~h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~-~~~~~~~~~~~~~~v~~~-~~~-~~~~~~s~~~~~~i~~~d   77 (93)
                      .|-++|+++.++|-    ..+++.++. |..+++|... ...++..+..+...+.++ |+| ....++++..||.+.+||
T Consensus       396 ~h~g~v~~v~~nPF----~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWD  470 (555)
T KOG1587|consen  396 THIGPVYAVSRNPF----YPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWD  470 (555)
T ss_pred             ccCcceEeeecCCC----ccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhh
Confidence            47789999999998    455444443 9999999987 667777777777889999 999 567888999999999999


Q ss_pred             CCCC
Q psy14456         78 LRTR   81 (93)
Q Consensus        78 ~~~~   81 (93)
                      +...
T Consensus       471 Ll~~  474 (555)
T KOG1587|consen  471 LLQD  474 (555)
T ss_pred             hhcc
Confidence            9864

>KOG0649|consensus

Probab=98.65  E-value=5e-07  Score=50.68  Aligned_cols=82  Identities=18%  Similarity=0.278  Sum_probs=59.7

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCC-------ceeE-Eeecc-----ccceEEE-EecCCCEEEEe
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATG-------QAFQ-ALSGH-----SGHVLSL-YNWGGATVLSG   67 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~-------~~~~-~~~~~-----~~~v~~~-~~~~~~~~~s~   67 (93)
                      |.++|+.++|..      ..++++|  ||.|+-|.-+..       .... ...-|     ...|+.+ ..|..+.++.+
T Consensus        61 hdgpiy~~~f~d------~~Lls~g--dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~A  132 (325)
T KOG0649|consen   61 HDGPIYYLAFHD------DFLLSGG--DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFA  132 (325)
T ss_pred             cCCCeeeeeeeh------hheeecc--CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEe
Confidence            788999999984      3566665  799998764321       1111 11112     2357788 88877777777


Q ss_pred             cCCCcEEEEeCCCCceeeEecCcc
Q psy14456         68 SHDRTVRFWDLRTRGCTNVLTPIT   91 (93)
Q Consensus        68 ~~~~~i~~~d~~~~~~~~~~~~~~   91 (93)
                      +.|+.+..||+++|...+.+++|+
T Consensus       133 gGD~~~y~~dlE~G~i~r~~rGHt  156 (325)
T KOG0649|consen  133 GGDGVIYQVDLEDGRIQREYRGHT  156 (325)
T ss_pred             cCCeEEEEEEecCCEEEEEEcCCc
Confidence            799999999999999999999986

>KOG2096|consensus

Probab=98.64  E-value=1.5e-07  Score=54.46  Aligned_cols=70  Identities=21%  Similarity=0.325  Sum_probs=57.7

Q ss_pred             ceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCC---CC-----ceeEEeeccccceEEE-EecCCCEEEEecCCCcEEE
Q psy14456          5 TVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCA---TG-----QAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRF   75 (93)
Q Consensus         5 ~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~---~~-----~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~   75 (93)
                      .-+..+.+|+    +++++++| --.-|.+|.+-   .|     ..+..+++|.+.+... |+++...+++.+.||..++
T Consensus       230 ~n~~aavSP~----GRFia~~g-FTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wri  304 (420)
T KOG2096|consen  230 SNYDAAVSPD----GRFIAVSG-FTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRI  304 (420)
T ss_pred             cccceeeCCC----CcEEEEec-CCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEE
Confidence            3456778898    88888888 47889999863   22     3356789999999999 9999999999999999999


Q ss_pred             EeCC
Q psy14456         76 WDLR   79 (93)
Q Consensus        76 ~d~~   79 (93)
                      ||..
T Consensus       305 wdtd  308 (420)
T KOG2096|consen  305 WDTD  308 (420)
T ss_pred             eecc
Confidence            9865

>KOG2106|consensus

Probab=98.61  E-value=8.4e-07  Score=53.99  Aligned_cols=67  Identities=30%  Similarity=0.505  Sum_probs=54.5

Q ss_pred             cceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEe
Q psy14456          4 GTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWD   77 (93)
Q Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d   77 (93)
                      ..|.|++|.++    ++ ++++.+ +|.+.+|+..+.+..+....|.+.|.++ .--+|.++ +|+.|+.|..||
T Consensus       247 k~Vl~v~F~en----gd-viTgDS-~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd  314 (626)
T KOG2106|consen  247 KFVLCVTFLEN----GD-VITGDS-GGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWD  314 (626)
T ss_pred             eEEEEEEEcCC----CC-EEeecC-CceEEEEeCCCceEEeEeeecCCceEEEEEecCccEe-ecCccceEEecc
Confidence            46899999987    34 566654 9999999998777666666899999999 77777655 599999999998

>KOG1310|consensus

Probab=98.61  E-value=1.8e-07  Score=57.43  Aligned_cols=76  Identities=29%  Similarity=0.397  Sum_probs=61.4

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCC----------ceeEEeeccccceEEE-EecCC-CEEEEecC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATG----------QAFQALSGHSGHVLSL-YNWGG-ATVLSGSH   69 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~----------~~~~~~~~~~~~v~~~-~~~~~-~~~~s~~~   69 (93)
                      |++.|.++.|.|..   ++.++.+|..|..|+++|+...          .....+..|...+..+ -.|++ +.+-+++.
T Consensus        92 HtaNIFsvKFvP~t---nnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasE  168 (758)
T KOG1310|consen   92 HTANIFSVKFVPYT---NNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASE  168 (758)
T ss_pred             cccceeEEeeeccC---CCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecC
Confidence            78899999999986   4556666667999999998741          3345667788888888 77755 78889999


Q ss_pred             CCcEEEEeCCC
Q psy14456         70 DRTVRFWDLRT   80 (93)
Q Consensus        70 ~~~i~~~d~~~   80 (93)
                      ||+++.+|++.
T Consensus       169 DGtirQyDiRE  179 (758)
T KOG1310|consen  169 DGTIRQYDIRE  179 (758)
T ss_pred             CcceeeecccC
Confidence            99999999986

>KOG1587|consensus

Probab=98.60  E-value=5.5e-07  Score=55.86  Aligned_cols=74  Identities=20%  Similarity=0.233  Sum_probs=56.7

Q ss_pred             ccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCce--eEE----eeccccceEEE-EecCC--CEEEEecCCCcE
Q psy14456          3 DGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQA--FQA----LSGHSGHVLSL-YNWGG--ATVLSGSHDRTV   73 (93)
Q Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~--~~~----~~~~~~~v~~~-~~~~~--~~~~s~~~~~~i   73 (93)
                      ...|.|+.|+|.    ...++++|+.+|.|.+||++.+..  ...    ...|...+..+ |-.+.  .-+++++.||.|
T Consensus       242 ~s~v~~~~f~p~----~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i  317 (555)
T KOG1587|consen  242 PSEVTCLKFCPF----DPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSI  317 (555)
T ss_pred             CCceeEEEeccC----CcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcE
Confidence            467999999998    566777777899999999987644  222    23577888888 75543  458999999999


Q ss_pred             EEEeCCC
Q psy14456         74 RFWDLRT   80 (93)
Q Consensus        74 ~~~d~~~   80 (93)
                      ..|+++.
T Consensus       318 ~~W~~~~  324 (555)
T KOG1587|consen  318 CSWDTDM  324 (555)
T ss_pred             eeeeccc
Confidence            9998764

>KOG0644|consensus

Probab=98.57  E-value=1.9e-08  Score=63.93  Aligned_cols=69  Identities=30%  Similarity=0.538  Sum_probs=57.9

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLR   79 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~   79 (93)
                      |.+.++.++.+..     +.++++++.|..|++|.+.++.++..+.+|++.|+.+ |+|..    +.+.|+++.+||.+
T Consensus       231 hs~ditdlavs~~-----n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r  300 (1113)
T KOG0644|consen  231 HSGDITDLAVSSN-----NTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDAR  300 (1113)
T ss_pred             Cccccchhccchh-----hhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEecccc
Confidence            6677888887654     4455555669999999999999999999999999999 99865    55789999999998

>KOG1963|consensus

Probab=98.57  E-value=8.8e-07  Score=56.28  Aligned_cols=82  Identities=17%  Similarity=0.219  Sum_probs=65.2

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      |...|.+++|+++    +.+++++| +.+.+-+|.+.+++ .+-+.--.+++..+ ++|++.+.+....|..|.+....+
T Consensus       250 H~~~V~~L~fS~~----G~~LlSGG-~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~d  323 (792)
T KOG1963|consen  250 HHDEVNSLSFSSD----GAYLLSGG-REGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASD  323 (792)
T ss_pred             cccccceeEEecC----CceEeecc-cceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccc
Confidence            6789999999999    78999999 79999999999988 33334445688888 999999999888999998887655


Q ss_pred             CceeeEecC
Q psy14456         81 RGCTNVLTP   89 (93)
Q Consensus        81 ~~~~~~~~~   89 (93)
                      -....++.+
T Consensus       324 l~~k~tIsg  332 (792)
T KOG1963|consen  324 LEIKSTISG  332 (792)
T ss_pred             hhhhhhccC
Confidence            444444433

>KOG2055|consensus

Probab=98.57  E-value=9.4e-07  Score=53.11  Aligned_cols=77  Identities=17%  Similarity=0.339  Sum_probs=65.4

Q ss_pred             eeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCCCcee
Q psy14456          6 VRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRGCT   84 (93)
Q Consensus         6 v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~~~   84 (93)
                      +.....+++    +++++..| ..|.|.+....+++.+..++ -.+.+..+ |+.++..+..++.+|.|.+||+++..++
T Consensus       306 ~e~FeVShd----~~fia~~G-~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~  379 (514)
T KOG2055|consen  306 MERFEVSHD----SNFIAIAG-NNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCL  379 (514)
T ss_pred             hheeEecCC----CCeEEEcc-cCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceE
Confidence            445566777    78889989 59999999999999888876 56788888 9999999988889999999999999888


Q ss_pred             eEec
Q psy14456         85 NVLT   88 (93)
Q Consensus        85 ~~~~   88 (93)
                      +.+.
T Consensus       380 ~rf~  383 (514)
T KOG2055|consen  380 HRFV  383 (514)
T ss_pred             EEEe
Confidence            8775

>KOG2111|consensus

Probab=98.56  E-value=2.4e-06  Score=49.29  Aligned_cols=72  Identities=21%  Similarity=0.259  Sum_probs=59.6

Q ss_pred             cceEEEeeeCCCeEEEEeCCCCce--eEEeeccccceEEE-EecCCCEEEEecCCCc-EEEEeCCCCceeeEecCc
Q psy14456         19 SSLLISGGAGDCKIYVTDCATGQA--FQALSGHSGHVLSL-YNWGGATVLSGSHDRT-VRFWDLRTRGCTNVLTPI   90 (93)
Q Consensus        19 ~~~~~~~g~~~~~v~~~~~~~~~~--~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~-i~~~d~~~~~~~~~~~~~   90 (93)
                      ...++.-|-+-|.|.+-|+.....  ...+.+|.+.|.|+ .+.+|.+++|++..|+ |++||.++|..++.++..
T Consensus       148 k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG  223 (346)
T KOG2111|consen  148 KSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRG  223 (346)
T ss_pred             ceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecC
Confidence            456666676789999999876554  46678999999999 9999999999998875 699999999999888753

>KOG1523|consensus

Probab=98.55  E-value=8.3e-07  Score=51.26  Aligned_cols=76  Identities=17%  Similarity=0.167  Sum_probs=62.2

Q ss_pred             CCccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCC---ceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEE
Q psy14456          1 MHDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATG---QAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFW   76 (93)
Q Consensus         1 ~h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~---~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~   76 (93)
                      +|...|++++|.|.    .+.|++++ .|..-.+|....+   .....+.-++....++ |+|.++++++++..+.+.+|
T Consensus        53 ~Hd~~vtgvdWap~----snrIvtcs-~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVc  127 (361)
T KOG1523|consen   53 EHDKIVTGVDWAPK----SNRIVTCS-HDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVC  127 (361)
T ss_pred             hhCcceeEEeecCC----CCceeEcc-CCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEE
Confidence            47889999999998    78899987 6999999998443   3334455678888999 99999999999999999998


Q ss_pred             eCCCC
Q psy14456         77 DLRTR   81 (93)
Q Consensus        77 d~~~~   81 (93)
                      =++..
T Consensus       128 y~E~E  132 (361)
T KOG1523|consen  128 YYEQE  132 (361)
T ss_pred             EEecc
Confidence            66543

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=98.55  E-value=2.9e-06  Score=49.32  Aligned_cols=77  Identities=39%  Similarity=0.652  Sum_probs=61.1

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeE-EeeccccceEEE-EecCCCEEEEecCCCcEEEEeCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQ-ALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLR   79 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~-~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~   79 (93)
                      |...|.+++|+|+    +..++.+++.|+.+++||...+.... .+.+|.... .. |.+++..+++++.|+.+++|+.+
T Consensus       197 ~~~~v~~~~~~~~----~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~  271 (466)
T COG2319         197 HTDPVSSLAFSPD----GGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLR  271 (466)
T ss_pred             CCCceEEEEEcCC----cceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeec
Confidence            6788999999987    55445543469999999988777777 677887775 44 88888888899999999999998


Q ss_pred             CCce
Q psy14456         80 TRGC   83 (93)
Q Consensus        80 ~~~~   83 (93)
                      ....
T Consensus       272 ~~~~  275 (466)
T COG2319         272 SSSS  275 (466)
T ss_pred             CCCc
Confidence            6654

>KOG4227|consensus

Probab=98.51  E-value=2.7e-06  Score=50.70  Aligned_cols=76  Identities=21%  Similarity=0.239  Sum_probs=63.3

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeec--cccceEEE-EecCCCEEEEecCCCcEEEEeC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSG--HSGHVLSL-YNWGGATVLSGSHDRTVRFWDL   78 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~--~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~   78 (93)
                      |.+.|.|++|.-.    +.++++++ ++++|...|+++.+.+..+..  ..+.|+.+ .+|..+.+++.+.++.+.+||.
T Consensus       104 H~SNIF~L~F~~~----N~~~~SG~-~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~  178 (609)
T KOG4227|consen  104 HRSNIFSLEFDLE----NRFLYSGE-RWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDN  178 (609)
T ss_pred             cccceEEEEEccC----CeeEecCC-CcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEec
Confidence            5688999999876    67777777 699999999999988876642  23488888 8998888999999999999999


Q ss_pred             CCCc
Q psy14456         79 RTRG   82 (93)
Q Consensus        79 ~~~~   82 (93)
                      +..+
T Consensus       179 Rd~~  182 (609)
T KOG4227|consen  179 RDRQ  182 (609)
T ss_pred             cCCC
Confidence            8765

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.51  E-value=3.4e-06  Score=50.27  Aligned_cols=76  Identities=20%  Similarity=0.188  Sum_probs=55.2

Q ss_pred             EEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEec-CCCcEEEEeCCCCceee
Q psy14456          8 DVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGS-HDRTVRFWDLRTRGCTN   85 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~-~~~~i~~~d~~~~~~~~   85 (93)
                      .+.++|+    +++++.++ +|+.+.++|+.+.+.+..+..-.+ ...+ +++++++++.++ ..+.+.++|.++.+.++
T Consensus        41 ~~~~s~D----gr~~yv~~-rdg~vsviD~~~~~~v~~i~~G~~-~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~  114 (369)
T PF02239_consen   41 GLKFSPD----GRYLYVAN-RDGTVSVIDLATGKVVATIKVGGN-PRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVK  114 (369)
T ss_dssp             EEE-TT-----SSEEEEEE-TTSEEEEEETTSSSEEEEEE-SSE-EEEEEE--TTTEEEEEEEETTEEEEEETTT--EEE
T ss_pred             EEEecCC----CCEEEEEc-CCCeEEEEECCcccEEEEEecCCC-cceEEEcCCCCEEEEEecCCCceeEecccccccee
Confidence            4567888    67777766 799999999999999888865444 3567 899999888665 78999999999988888


Q ss_pred             EecC
Q psy14456         86 VLTP   89 (93)
Q Consensus        86 ~~~~   89 (93)
                      .+..
T Consensus       115 ~I~~  118 (369)
T PF02239_consen  115 TIPT  118 (369)
T ss_dssp             EEE-
T ss_pred             eccc
Confidence            7653

...

>KOG0771|consensus

Probab=98.49  E-value=1.5e-06  Score=51.39  Aligned_cols=81  Identities=27%  Similarity=0.335  Sum_probs=62.2

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCce----------------------------e----------
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQA----------------------------F----------   43 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~----------------------------~----------   43 (93)
                      |.+.|.++.|+|+    ++++++.|. | ..++|+.+++..                            +          
T Consensus       185 ~~~eV~DL~FS~d----gk~lasig~-d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v  258 (398)
T KOG0771|consen  185 HHAEVKDLDFSPD----GKFLASIGA-D-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGV  258 (398)
T ss_pred             hcCccccceeCCC----CcEEEEecC-C-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCce
Confidence            6789999999999    889999984 7 999999876510                            0          


Q ss_pred             EE--e---e-----------ccccceEEE-EecCCCEEEEecCCCcEEEEeCCCCceeeEec
Q psy14456         44 QA--L---S-----------GHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRGCTNVLT   88 (93)
Q Consensus        44 ~~--~---~-----------~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~   88 (93)
                      ..  +   .           .....+.++ .+.+|.+++.|+.|+.|-+++..+-++++.+.
T Consensus       259 ~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk  320 (398)
T KOG0771|consen  259 RLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVK  320 (398)
T ss_pred             eEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeeh
Confidence            00  0   0           012367788 89999999999999999999998877766654

>KOG2321|consensus

Probab=98.49  E-value=1.8e-06  Score=53.31  Aligned_cols=78  Identities=27%  Similarity=0.335  Sum_probs=59.5

Q ss_pred             cceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEee------cccc-----ceEEE-EecCCCEEEEecCCC
Q psy14456          4 GTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALS------GHSG-----HVLSL-YNWGGATVLSGSHDR   71 (93)
Q Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~------~~~~-----~v~~~-~~~~~~~~~s~~~~~   71 (93)
                      +.+.++...+.    ..++++++ .+|.|-.||.++.+.+..+.      .|.+     .++++ |.-+|-.++.|..+|
T Consensus       176 ~~lN~v~in~~----hgLla~Gt-~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G  250 (703)
T KOG2321|consen  176 GELNVVSINEE----HGLLACGT-EDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTG  250 (703)
T ss_pred             ccceeeeecCc----cceEEecc-cCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCC
Confidence            56788888776    45555544 79999999998876554443      1222     37888 988899999999999


Q ss_pred             cEEEEeCCCCceeeE
Q psy14456         72 TVRFWDLRTRGCTNV   86 (93)
Q Consensus        72 ~i~~~d~~~~~~~~~   86 (93)
                      .+.++|+++.+++..
T Consensus       251 ~v~iyDLRa~~pl~~  265 (703)
T KOG2321|consen  251 SVLIYDLRASKPLLV  265 (703)
T ss_pred             cEEEEEcccCCceee
Confidence            999999998876554

>KOG2139|consensus

Probab=98.46  E-value=2.7e-06  Score=50.04  Aligned_cols=79  Identities=19%  Similarity=0.284  Sum_probs=56.3

Q ss_pred             ccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCC----c--------eeE--EeeccccceEEE-EecCCCEEEEe
Q psy14456          3 DGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATG----Q--------AFQ--ALSGHSGHVLSL-YNWGGATVLSG   67 (93)
Q Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~----~--------~~~--~~~~~~~~v~~~-~~~~~~~~~s~   67 (93)
                      +..|+|++|.|.+   ++ .++.|+ .+-|.+|.....    .        +..  .-.+| ..|.++ |++++..++++
T Consensus       140 QrnvtclawRPls---as-elavgC-r~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tA  213 (445)
T KOG2139|consen  140 QRNVTCLAWRPLS---AS-ELAVGC-RAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTA  213 (445)
T ss_pred             hcceeEEEeccCC---cc-eeeeee-cceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeec
Confidence            3579999999984   33 555565 778899976421    1        111  22233 678899 99999999988


Q ss_pred             c-CCCcEEEEeCCCCceeeEe
Q psy14456         68 S-HDRTVRFWDLRTRGCTNVL   87 (93)
Q Consensus        68 ~-~~~~i~~~d~~~~~~~~~~   87 (93)
                      + .|+.+++||..+++++...
T Consensus       214 S~gsssi~iWdpdtg~~~pL~  234 (445)
T KOG2139|consen  214 SFGSSSIMIWDPDTGQKIPLI  234 (445)
T ss_pred             ccCcceEEEEcCCCCCccccc
Confidence            7 6789999999988765443

>KOG0650|consensus

Probab=98.44  E-value=9.6e-07  Score=54.70  Aligned_cols=48  Identities=33%  Similarity=0.541  Sum_probs=43.4

Q ss_pred             eeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCCCceeeEecC
Q psy14456         42 AFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRGCTNVLTP   89 (93)
Q Consensus        42 ~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~   89 (93)
                      +-..+.+|++.+.++ ..+.|.++++|+.||++++|.+.+|.|++.+.-
T Consensus       392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~  440 (733)
T KOG0650|consen  392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF  440 (733)
T ss_pred             eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee
Confidence            445668999999999 999999999999999999999999999988754

>KOG1409|consensus

Probab=98.42  E-value=1.1e-06  Score=51.30  Aligned_cols=75  Identities=24%  Similarity=0.411  Sum_probs=59.9

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCce-eEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQA-FQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLR   79 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~-~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~   79 (93)
                      |.+.+++++|.+.    ...++++. .|..+.+||+--..- ...+.+|...+..+ ..+..+.+++++.|+.|.+||..
T Consensus       196 h~~~~~~l~Wd~~----~~~LfSg~-~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn  270 (404)
T KOG1409|consen  196 HTGEVTCLKWDPG----QRLLFSGA-SDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMN  270 (404)
T ss_pred             cccceEEEEEcCC----CcEEEecc-ccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence            7789999999986    55556654 699999999864433 45667899988888 66677889999999999999987


Q ss_pred             CC
Q psy14456         80 TR   81 (93)
Q Consensus        80 ~~   81 (93)
                      ..
T Consensus       271 ~~  272 (404)
T KOG1409|consen  271 VK  272 (404)
T ss_pred             ce
Confidence            43

>KOG0974|consensus

Probab=98.36  E-value=8.7e-06  Score=52.92  Aligned_cols=72  Identities=25%  Similarity=0.345  Sum_probs=56.9

Q ss_pred             ceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCCCceee-EecCcc
Q psy14456         20 SLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRGCTN-VLTPIT   91 (93)
Q Consensus        20 ~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~~~~-~~~~~~   91 (93)
                      ...+++|+--+.+.+|+.........+.+|.+.+..+ ++.++.++++++.|+.+++|++.+.+... ...+|+
T Consensus       145 ~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHs  218 (967)
T KOG0974|consen  145 ELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHS  218 (967)
T ss_pred             EEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccccccc
Confidence            4445556669999999987444444688999999999 99999999999999999999999877654 333443

>KOG1272|consensus

Probab=98.34  E-value=2e-06  Score=51.88  Aligned_cols=67  Identities=19%  Similarity=0.265  Sum_probs=49.7

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEE
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFW   76 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~   76 (93)
                      |.++|.++++.++    +.+++++|. |..++|||++.-..+.+... ..+...+ ++..+.  +.++....+.+|
T Consensus       292 H~g~V~siAv~~~----G~YMaTtG~-Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkgl--LA~~~G~~v~iw  359 (545)
T KOG1272|consen  292 HRGPVSSIAVDRG----GRYMATTGL-DRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKGL--LALSYGDHVQIW  359 (545)
T ss_pred             cCCCcceEEECCC----CcEEeeccc-ccceeEeeeccccccceeec-CCCccccccccccc--eeeecCCeeeee
Confidence            7899999999999    899999995 99999999987765555533 2334455 565553  344556678888

>KOG1523|consensus

Probab=98.33  E-value=6.6e-06  Score=47.68  Aligned_cols=74  Identities=14%  Similarity=0.210  Sum_probs=61.7

Q ss_pred             ccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCC---ceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeC
Q psy14456          3 DGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATG---QAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDL   78 (93)
Q Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~---~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~   78 (93)
                      .++|+|.+|.++    ...++.+- .+..+.||.....   +...+++.|...++.+ |++..+.|++|+.|+.-.+|..
T Consensus        10 ~~pitchAwn~d----rt~iAv~~-~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~   84 (361)
T KOG1523|consen   10 LEPITCHAWNSD----RTQIAVSP-NNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQ   84 (361)
T ss_pred             cCceeeeeecCC----CceEEecc-CCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcccccc
Confidence            368999999998    66666655 4789999987654   4567888999999999 9999999999999999999998


Q ss_pred             CCC
Q psy14456         79 RTR   81 (93)
Q Consensus        79 ~~~   81 (93)
                      ..+
T Consensus        85 ~~~   87 (361)
T KOG1523|consen   85 PSG   87 (361)
T ss_pred             CCC
Confidence            544

>smart00320 WD40 WD40 repeats

Probab=98.33  E-value=4.6e-06  Score=32.43  Aligned_cols=37  Identities=35%  Similarity=0.708  Sum_probs=30.9

Q ss_pred             ceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEe
Q psy14456         41 QAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWD   77 (93)
Q Consensus        41 ~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d   77 (93)
                      .....+..|...+.++ |.+.+..+++++.|+.+.+|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            3455566788889999 998889999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG2106|consensus

Probab=98.32  E-value=2.5e-05  Score=47.93  Aligned_cols=33  Identities=24%  Similarity=0.473  Sum_probs=29.3

Q ss_pred             ccceEEE-EecCCCEEEEecCCCcEEEEeCCCCc
Q psy14456         50 SGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRG   82 (93)
Q Consensus        50 ~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~   82 (93)
                      ++++.++ |+|+|..++.++.|+.|.+|-+..+.
T Consensus       447 ~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g  480 (626)
T KOG2106|consen  447 NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANG  480 (626)
T ss_pred             CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCC
Confidence            6788999 99999999999999999999776543

>KOG1240|consensus

Probab=98.30  E-value=1.2e-05  Score=53.54  Aligned_cols=75  Identities=19%  Similarity=0.233  Sum_probs=56.2

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCC-------ceeEEeeccccceEEE-EecCCCEEEEecCCCcE
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATG-------QAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTV   73 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~-------~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i   73 (93)
                      |...|..++.++++   ++++++++ .||+|++|+.+..       ++..++..-.+.+.++ +...+..++.++.||.+
T Consensus      1047 hs~~v~k~a~s~~~---~s~FvsgS-~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v 1122 (1431)
T KOG1240|consen 1047 HSSAVIKLAVSSEH---TSLFVSGS-DDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSV 1122 (1431)
T ss_pred             ccccccceeecCCC---CceEEEec-CCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeE
Confidence            56778888888773   57777766 5999999998632       2333443345677777 78888999999999999


Q ss_pred             EEEeCCC
Q psy14456         74 RFWDLRT   80 (93)
Q Consensus        74 ~~~d~~~   80 (93)
                      .+.++..
T Consensus      1123 ~~~~id~ 1129 (1431)
T KOG1240|consen 1123 RVLRIDH 1129 (1431)
T ss_pred             EEEEccc
Confidence            9998765

>KOG1538|consensus

Probab=98.23  E-value=1.5e-06  Score=54.80  Aligned_cols=32  Identities=28%  Similarity=0.380  Sum_probs=28.1

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCA   38 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~   38 (93)
                      |...|+|++|+.+    ++.++++++ |..|.+|...
T Consensus        52 HKDtVycVAys~d----GkrFASG~a-DK~VI~W~~k   83 (1081)
T KOG1538|consen   52 HKDTVYCVAYAKD----GKRFASGSA-DKSVIIWTSK   83 (1081)
T ss_pred             ccceEEEEEEccC----CceeccCCC-ceeEEEeccc
Confidence            7889999999999    788888775 9999999864

>KOG2695|consensus

Probab=98.21  E-value=2.4e-06  Score=49.99  Aligned_cols=79  Identities=22%  Similarity=0.355  Sum_probs=57.1

Q ss_pred             eeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCC-----ceeEEeeccccceEEE--EecCCCEEEEecCCCcEEEEeC
Q psy14456          6 VRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATG-----QAFQALSGHSGHVLSL--YNWGGATVLSGSHDRTVRFWDL   78 (93)
Q Consensus         6 v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~-----~~~~~~~~~~~~v~~~--~~~~~~~~~s~~~~~~i~~~d~   78 (93)
                      |.++.|.-.    .++++. |+++|.|...|++.+     .+...+ -|.+.++++  ..-+.+.+.+.++++.|.+||.
T Consensus       255 VfAlQf~~s----~nLv~~-GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~  328 (425)
T KOG2695|consen  255 VFALQFAGS----DNLVFN-GCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDL  328 (425)
T ss_pred             HHHHHhccc----CCeeEe-cccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeee
Confidence            444555443    344444 569999999999865     344444 377888887  3436788888899999999999


Q ss_pred             CCCce---eeEecCc
Q psy14456         79 RTRGC---TNVLTPI   90 (93)
Q Consensus        79 ~~~~~---~~~~~~~   90 (93)
                      +--++   ++.+++|
T Consensus       329 R~~K~~~~V~qYeGH  343 (425)
T KOG2695|consen  329 RATKCKKSVMQYEGH  343 (425)
T ss_pred             hhhhcccceeeeecc
Confidence            97777   7777776

>KOG0322|consensus

Probab=98.20  E-value=5.2e-06  Score=47.11  Aligned_cols=85  Identities=19%  Similarity=0.208  Sum_probs=61.4

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCC--ce--eEEeeccccceEEE-EecCCCEEEEecCCCcEEEE
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATG--QA--FQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFW   76 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~--~~--~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~   76 (93)
                      |.++|.++.|.+.    -+.-+.+| -+-.+.+|.++..  .+  ...+.-.+-.+..+ .-||+..++|++.|+.+++|
T Consensus       204 h~qpvlsldyas~----~~rGisgg-a~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVy  278 (323)
T KOG0322|consen  204 HKQPVLSLDYASS----CDRGISGG-ADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVY  278 (323)
T ss_pred             ccCcceeeeechh----hcCCcCCC-ccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEE
Confidence            6788999999876    33445555 4778888887643  22  12222233445566 78899999999999999999


Q ss_pred             eCCCCceeeEecCcc
Q psy14456         77 DLRTRGCTNVLTPIT   91 (93)
Q Consensus        77 d~~~~~~~~~~~~~~   91 (93)
                      ..++..++.++..|.
T Consensus       279 swrtl~pLAVLkyHs  293 (323)
T KOG0322|consen  279 SWRTLNPLAVLKYHS  293 (323)
T ss_pred             EeccCCchhhhhhhh
Confidence            999999888877664

>KOG1334|consensus

Probab=98.13  E-value=2.3e-06  Score=51.90  Aligned_cols=72  Identities=25%  Similarity=0.310  Sum_probs=58.0

Q ss_pred             ceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          5 TVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         5 ~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      .|.++-|--.    ..-++.+|+..|.|.+|+-.+++.+.-+.+....|+|+ -+|.-..|++++.|.-|++|-..+
T Consensus       395 TVKgVNFfGP----rsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~  467 (559)
T KOG1334|consen  395 TVKGVNFFGP----RSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLT  467 (559)
T ss_pred             ccceeeeccC----ccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCCc
Confidence            3556655433    34566677789999999999999888888877788999 888888999999999999997643

>KOG1524|consensus

Probab=98.13  E-value=6.3e-06  Score=50.84  Aligned_cols=54  Identities=24%  Similarity=0.399  Sum_probs=38.1

Q ss_pred             CCccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecC
Q psy14456          1 MHDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWG   60 (93)
Q Consensus         1 ~h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~   60 (93)
                      .|.+-|.+++|++.    ++.++++| +|...++||.. |..+.....|..+++++ |+|+
T Consensus       184 AHDGiiL~~~W~~~----s~lI~sgG-ED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd  238 (737)
T KOG1524|consen  184 AHDGLVLSLSWSTQ----SNIIASGG-EDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE  238 (737)
T ss_pred             ccCcEEEEeecCcc----ccceeecC-CceeEEeeccc-CcccccCChhccceeeeeeccc
Confidence            37889999999998    78888888 79999999964 33333334444444544 4444

>KOG2315|consensus

Probab=98.11  E-value=6e-05  Score=46.52  Aligned_cols=80  Identities=18%  Similarity=0.295  Sum_probs=58.3

Q ss_pred             ccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecC---CCcEEEEeC
Q psy14456          3 DGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSH---DRTVRFWDL   78 (93)
Q Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~---~~~i~~~d~   78 (93)
                      .++|.++.|+|.+   ..+.+.-|-.--.+.++|++ +.++..+  -.++-+++ |+|.|+.++-++.   .|.+-+||+
T Consensus       270 ~GPVhdv~W~~s~---~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv  343 (566)
T KOG2315|consen  270 EGPVHDVTWSPSG---REFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDV  343 (566)
T ss_pred             CCCceEEEECCCC---CEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEec
Confidence            5799999999984   45555556557889999976 4444444  34455677 9999998887664   489999999


Q ss_pred             CCCceeeEec
Q psy14456         79 RTRGCTNVLT   88 (93)
Q Consensus        79 ~~~~~~~~~~   88 (93)
                      .+.+++..+.
T Consensus       344 ~n~K~i~~~~  353 (566)
T KOG2315|consen  344 PNRKLIAKFK  353 (566)
T ss_pred             cchhhccccc
Confidence            9876665554

>KOG1064|consensus

Probab=98.09  E-value=3.1e-06  Score=58.18  Aligned_cols=73  Identities=22%  Similarity=0.428  Sum_probs=59.0

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEEEecCCCEEEEecCCCcEEEEeCCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWGGATVLSGSHDRTVRFWDLRTR   81 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~   81 (93)
                      |.+.++++++.|.    .+.++++| ++|.|++||++..+.++.++.        ++ ...++++++..|.+++|++..-
T Consensus      2335 H~~gaT~l~~~P~----~qllisgg-r~G~v~l~D~rqrql~h~~~~--------~~-~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2335 HDGGATVLAYAPK----HQLLISGG-RKGEVCLFDIRQRQLRHTFQA--------LD-TREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred             cCCCceEEEEcCc----ceEEEecC-CcCcEEEeehHHHHHHHHhhh--------hh-hhheeeccCcccceEEEEcccc
Confidence            7788999999998    78888877 799999999987777666654        23 4568889999999999999876


Q ss_pred             ceeeEec
Q psy14456         82 GCTNVLT   88 (93)
Q Consensus        82 ~~~~~~~   88 (93)
                      ..+..+.
T Consensus      2401 ~ll~~~p 2407 (2439)
T KOG1064|consen 2401 GLLHTFP 2407 (2439)
T ss_pred             chhhcCc
Confidence            6555553

>KOG0280|consensus

Probab=98.09  E-value=8.6e-05  Score=42.87  Aligned_cols=69  Identities=13%  Similarity=0.118  Sum_probs=52.3

Q ss_pred             eeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCcee--EEeeccccceEEE-Eec-CCCEEEEecCCCcEEEEeCC
Q psy14456          6 VRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAF--QALSGHSGHVLSL-YNW-GGATVLSGSHDRTVRFWDLR   79 (93)
Q Consensus         6 v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~--~~~~~~~~~v~~~-~~~-~~~~~~s~~~~~~i~~~d~~   79 (93)
                      ..++.|++.    +..++++-+ +|.+.+-+.......  +.++.|.-+.... |+. +++++.+|+.|+.+..||+|
T Consensus       124 ~lslD~~~~----~~~i~vs~s-~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R  196 (339)
T KOG0280|consen  124 ALSLDISTS----GTKIFVSDS-RGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIR  196 (339)
T ss_pred             eeEEEeecc----CceEEEEcC-CCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEec
Confidence            356788887    566777664 888886554444443  3778898888777 766 67889999999999999999

>PRK01742 tolB translocation protein TolB; Provisional

Probab=98.06  E-value=0.00016  Score=44.06  Aligned_cols=74  Identities=15%  Similarity=0.203  Sum_probs=48.4

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeC--CCeEEEEeCCCCce--eEEeeccccceEEE-EecCCCEEEEe-cCCCcEEE
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAG--DCKIYVTDCATGQA--FQALSGHSGHVLSL-YNWGGATVLSG-SHDRTVRF   75 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~--~~~v~~~~~~~~~~--~~~~~~~~~~v~~~-~~~~~~~~~s~-~~~~~i~~   75 (93)
                      |...+....|+|+    ++.++.+...  +..|.+||+.++..  +..+.++.   ... |+|++..++.+ ..++...+
T Consensus       202 ~~~~v~~p~wSPD----G~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~---~~~~wSPDG~~La~~~~~~g~~~I  274 (429)
T PRK01742        202 SSQPLMSPAWSPD----GSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHN---GAPAFSPDGSRLAFASSKDGVLNI  274 (429)
T ss_pred             CCCccccceEcCC----CCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCcc---CceeECCCCCEEEEEEecCCcEEE
Confidence            3456889999999    6666654422  34799999988754  33333332   346 99999987765 46776555


Q ss_pred             E--eCCCCc
Q psy14456         76 W--DLRTRG   82 (93)
Q Consensus        76 ~--d~~~~~   82 (93)
                      |  |+.++.
T Consensus       275 y~~d~~~~~  283 (429)
T PRK01742        275 YVMGANGGT  283 (429)
T ss_pred             EEEECCCCC
Confidence            5  665554

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.05  E-value=0.00014  Score=43.59  Aligned_cols=71  Identities=20%  Similarity=0.215  Sum_probs=52.0

Q ss_pred             cceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCCCceeeEecC
Q psy14456         19 SSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRGCTNVLTP   89 (93)
Q Consensus        19 ~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~   89 (93)
                      +++++..-..++.|.+.|..+.+.+..+....+.-..+ |+++++++...+.|+.+.++|+.+++.+..+..
T Consensus         5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~   76 (369)
T PF02239_consen    5 GNLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV   76 (369)
T ss_dssp             GGEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-
T ss_pred             ccEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec
Confidence            45554444458999999999999998887544433345 899999998888999999999999988877753

...

>KOG4640|consensus

Probab=98.04  E-value=7e-05  Score=46.97  Aligned_cols=76  Identities=16%  Similarity=0.212  Sum_probs=61.1

Q ss_pred             ceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceE-EE-EecCCCEEEEecCCCcEEEEeCCCCc
Q psy14456          5 TVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVL-SL-YNWGGATVLSGSHDRTVRFWDLRTRG   82 (93)
Q Consensus         5 ~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~-~~-~~~~~~~~~s~~~~~~i~~~d~~~~~   82 (93)
                      .+.-+.|+|.    ..+++... .+|.+-+..++ .+.+..+.-+...+. ++ |.|+|.+++.|-.||+|.+.|.+++.
T Consensus        22 ~i~~~ewnP~----~dLiA~~t-~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~   95 (665)
T KOG4640|consen   22 NIKRIEWNPK----MDLIATRT-EKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG   95 (665)
T ss_pred             ceEEEEEcCc----cchhheec-cCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC
Confidence            4667889987    67776655 69999998888 555667765555555 88 99999999999999999999999987


Q ss_pred             eeeE
Q psy14456         83 CTNV   86 (93)
Q Consensus        83 ~~~~   86 (93)
                      .+..
T Consensus        96 ~l~~   99 (665)
T KOG4640|consen   96 RLVS   99 (665)
T ss_pred             ceec
Confidence            6655

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.04  E-value=0.00021  Score=43.52  Aligned_cols=78  Identities=22%  Similarity=0.240  Sum_probs=52.9

Q ss_pred             CccceeEEEEEecCCCCcceEEEeee--CCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEE-EecCCC--cEEE
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGA--GDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVL-SGSHDR--TVRF   75 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~--~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~-s~~~~~--~i~~   75 (93)
                      |.+.+....|+|+    ++.++....  .+..|.+|++.++... .+....+.+... |+|++..++ +.+.++  .|.+
T Consensus       200 ~~~~v~~p~wSpD----G~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~  274 (435)
T PRK05137        200 GSSLVLTPRFSPN----RQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYT  274 (435)
T ss_pred             CCCCeEeeEECCC----CCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEEE
Confidence            4467889999999    566554432  2568999999887653 344445555666 999998765 555554  4777


Q ss_pred             EeCCCCcee
Q psy14456         76 WDLRTRGCT   84 (93)
Q Consensus        76 ~d~~~~~~~   84 (93)
                      ||+.++...
T Consensus       275 ~d~~~~~~~  283 (435)
T PRK05137        275 MDLRSGTTT  283 (435)
T ss_pred             EECCCCceE
Confidence            788876543

>KOG1645|consensus

Probab=98.04  E-value=3.4e-05  Score=46.14  Aligned_cols=76  Identities=17%  Similarity=0.234  Sum_probs=59.0

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecC-CCEEEEecCCCcEEEEeCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWG-GATVLSGSHDRTVRFWDLR   79 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~-~~~~~s~~~~~~i~~~d~~   79 (93)
                      |...|.+++|+|.    .+-++..++.+..|.+.|+++..++..+..+ ..+.+. |.-+ .+.+..|...|.|.++|++
T Consensus       192 ~g~~IrdlafSp~----~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R  266 (463)
T KOG1645|consen  192 EGSFIRDLAFSPF----NEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMR  266 (463)
T ss_pred             cchhhhhhccCcc----ccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEcc
Confidence            5567889999998    4534555567999999999999888888777 555555 7774 4567788899999999999


Q ss_pred             CCc
Q psy14456         80 TRG   82 (93)
Q Consensus        80 ~~~   82 (93)
                      ..+
T Consensus       267 ~~~  269 (463)
T KOG1645|consen  267 QPE  269 (463)
T ss_pred             CCC
Confidence            653

>KOG3881|consensus

Probab=98.04  E-value=7.7e-05  Score=44.35  Aligned_cols=78  Identities=13%  Similarity=0.166  Sum_probs=60.9

Q ss_pred             eeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCc-eeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCCCce
Q psy14456          6 VRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQ-AFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRGC   83 (93)
Q Consensus         6 v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~-~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~~   83 (93)
                      ++++.|-++..  ...|+++ .+-+.+++||.+.++ ++.++.--++++.++ ..|+++.++++...+.+..||++++..
T Consensus       205 ~tdi~Fl~g~~--~~~fat~-T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl  281 (412)
T KOG3881|consen  205 ITDIRFLEGSP--NYKFATI-TRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKL  281 (412)
T ss_pred             eccceecCCCC--CceEEEE-ecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCcee
Confidence            56667766421  2345554 479999999998764 567777678889999 999999999999999999999999876


Q ss_pred             eeE
Q psy14456         84 TNV   86 (93)
Q Consensus        84 ~~~   86 (93)
                      +..
T Consensus       282 ~g~  284 (412)
T KOG3881|consen  282 LGC  284 (412)
T ss_pred             ecc
Confidence            554

>KOG4497|consensus

Probab=98.00  E-value=0.00011  Score=43.28  Aligned_cols=75  Identities=16%  Similarity=0.236  Sum_probs=59.2

Q ss_pred             ceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCE-EEEecCCCcEEEEeCCCCc
Q psy14456          5 TVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGAT-VLSGSHDRTVRFWDLRTRG   82 (93)
Q Consensus         5 ~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~-~~s~~~~~~i~~~d~~~~~   82 (93)
                      .|.-+.|..+    ...++++...++.|.+|++...+-...+....+++..+ |+|+++. +.+...+..|.+|.+.+..
T Consensus        50 ki~yieW~ad----s~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~  125 (447)
T KOG4497|consen   50 KIVYIEWKAD----SCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK  125 (447)
T ss_pred             Hhhheeeecc----ceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccce
Confidence            3455667766    66777777789999999998777777787777888888 9999955 4577799999999998765


Q ss_pred             e
Q psy14456         83 C   83 (93)
Q Consensus        83 ~   83 (93)
                      .
T Consensus       126 ~  126 (447)
T KOG4497|consen  126 G  126 (447)
T ss_pred             e
Confidence            4

>KOG2315|consensus

Probab=97.99  E-value=7.6e-05  Score=46.10  Aligned_cols=72  Identities=14%  Similarity=0.280  Sum_probs=53.7

Q ss_pred             ccceeEEEEEecCCCCcceEEEee--eCCCeEEEEeCCCCceeEEeeccccceEEEEecCCCEEEEecC------CCcEE
Q psy14456          3 DGTVRDVCFIEDTSNKSSLLISGG--AGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWGGATVLSGSH------DRTVR   74 (93)
Q Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~g--~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~------~~~i~   74 (93)
                      +++-+++-|+|.    +++++.+|  +-.|.+-+||+...+++..+..-...+ +-|+|+|.+++|+..      |..++
T Consensus       311 egpRN~~~fnp~----g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~-~eW~PdGe~flTATTaPRlrvdNg~K  385 (566)
T KOG2315|consen  311 EGPRNTAFFNPH----GNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTV-FEWSPDGEYFLTATTAPRLRVDNGIK  385 (566)
T ss_pred             CCCccceEECCC----CCEEEEeecCCCCCceEEEeccchhhccccccCCceE-EEEcCCCcEEEEEeccccEEecCCeE
Confidence            466778889998    67776665  557889999998877777775433332 229999999998865      46788


Q ss_pred             EEeCC
Q psy14456         75 FWDLR   79 (93)
Q Consensus        75 ~~d~~   79 (93)
                      +|++.
T Consensus       386 iwhyt  390 (566)
T KOG2315|consen  386 IWHYT  390 (566)
T ss_pred             EEEec
Confidence            89875

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=97.97  E-value=0.00034  Score=40.17  Aligned_cols=44  Identities=7%  Similarity=0.200  Sum_probs=37.2

Q ss_pred             ccceEEE-EecCCCEEEEecCCCcEEEEeCCCCceeeEecCccCC
Q psy14456         50 SGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRGCTNVLTPITVP   93 (93)
Q Consensus        50 ~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~~~   93 (93)
                      ...|..| .+|++.++++...+|.+.+|++.+-...+.+...+.|
T Consensus       229 ~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~eqP  273 (282)
T PF15492_consen  229 QDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQDEQP  273 (282)
T ss_pred             CCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchhhCC
Confidence            4578888 9999999999999999999999988777777665544

>KOG1517|consensus

Probab=97.97  E-value=7.8e-05  Score=49.49  Aligned_cols=61  Identities=23%  Similarity=0.371  Sum_probs=48.4

Q ss_pred             cceEEEeeeCCCeEEEEeCCCC---ceeEEeeccccc--eEEE-EecCCC-EEEEecCCCcEEEEeCCC
Q psy14456         19 SSLLISGGAGDCKIYVTDCATG---QAFQALSGHSGH--VLSL-YNWGGA-TVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus        19 ~~~~~~~g~~~~~v~~~~~~~~---~~~~~~~~~~~~--v~~~-~~~~~~-~~~s~~~~~~i~~~d~~~   80 (93)
                      ++.++++. .||.+++||.+..   ..+.....|+..  |..+ +.+.|. .+++++.+|.|.+||+|.
T Consensus      1221 gn~i~AGf-aDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~ 1288 (1387)
T KOG1517|consen 1221 GNIIAAGF-ADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRM 1288 (1387)
T ss_pred             CceEEEee-cCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEeccc
Confidence            56666665 5999999998753   346677778876  8888 877554 499999999999999997

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=97.97  E-value=0.00013  Score=42.78  Aligned_cols=70  Identities=9%  Similarity=0.097  Sum_probs=49.5

Q ss_pred             eeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeE-------EeeccccceEEE-EecCCCEEEEecC-CCcEEEE
Q psy14456          6 VRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQ-------ALSGHSGHVLSL-YNWGGATVLSGSH-DRTVRFW   76 (93)
Q Consensus         6 v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~-------~~~~~~~~v~~~-~~~~~~~~~s~~~-~~~i~~~   76 (93)
                      ...++++|+    ++.++++...++.|.+||+++...+.       ... .......+ |+|+++++++... ++.+.+|
T Consensus       128 ~~~~~~~p~----g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~  202 (330)
T PRK11028        128 CHSANIDPD----NRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVW  202 (330)
T ss_pred             ccEeEeCCC----CCEEEEeeCCCCEEEEEEECCCCcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEE
Confidence            456778888    67777666678999999997633221       111 12334567 9999998877764 8999999


Q ss_pred             eCCC
Q psy14456         77 DLRT   80 (93)
Q Consensus        77 d~~~   80 (93)
                      ++..
T Consensus       203 ~~~~  206 (330)
T PRK11028        203 QLKD  206 (330)
T ss_pred             EEeC
Confidence            9973

>PRK01742 tolB translocation protein TolB; Provisional

Probab=97.95  E-value=9.7e-05  Score=44.93  Aligned_cols=73  Identities=16%  Similarity=0.140  Sum_probs=48.3

Q ss_pred             cceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCc-eeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCCC
Q psy14456          4 GTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQ-AFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTR   81 (93)
Q Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~-~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~   81 (93)
                      ..+....|+|+    ++.++.++.+++...+|+++... ....+ .+..  ... |+|++..++..+.++ +..||+.++
T Consensus       292 ~~~~~~~wSpD----G~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g  363 (429)
T PRK01742        292 GNNTEPSWSPD----GQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSG  363 (429)
T ss_pred             CCcCCEEECCC----CCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCC
Confidence            44678899999    66666555467888888865432 22222 3333  346 899999988776655 555999887


Q ss_pred             cee
Q psy14456         82 GCT   84 (93)
Q Consensus        82 ~~~   84 (93)
                      ...
T Consensus       364 ~~~  366 (429)
T PRK01742        364 STE  366 (429)
T ss_pred             CeE
Confidence            654

>KOG1064|consensus

Probab=97.94  E-value=1e-05  Score=55.85  Aligned_cols=65  Identities=22%  Similarity=0.353  Sum_probs=49.9

Q ss_pred             eEEEee--eCCCeEEEEeCCCC---ceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCCCceeeEe
Q psy14456         21 LLISGG--AGDCKIYVTDCATG---QAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRGCTNVL   87 (93)
Q Consensus        21 ~~~~~g--~~~~~v~~~~~~~~---~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~   87 (93)
                      .++++|  +.++.+.+||....   ..+.  ..|.+.++++ +.|..+++++|+.+|.+.+||+++.+....+
T Consensus      2304 ~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~ 2374 (2439)
T KOG1064|consen 2304 LLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTF 2374 (2439)
T ss_pred             hhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHh
Confidence            344444  45888999996432   2233  6799999999 9999999999999999999999987655444

>smart00320 WD40 WD40 repeats

Probab=97.94  E-value=2.7e-05  Score=30.07  Aligned_cols=30  Identities=37%  Similarity=0.493  Sum_probs=24.5

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEe
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTD   36 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~   36 (93)
                      |...|.++.|.+.    ...+++++ .|+.+++|+
T Consensus        11 ~~~~i~~~~~~~~----~~~~~~~~-~d~~~~~~~   40 (40)
T smart00320       11 HTGPVTSVAFSPD----GKYLASAS-DDGTIKLWD   40 (40)
T ss_pred             cCCceeEEEECCC----CCEEEEec-CCCeEEEcC
Confidence            5678999999987    56777766 599999985

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG2041|consensus

Probab=97.90  E-value=8.1e-05  Score=47.83  Aligned_cols=74  Identities=19%  Similarity=0.295  Sum_probs=59.5

Q ss_pred             cceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCC---------------ceeEEeeccccceEEE-EecCCCEEEEe
Q psy14456          4 GTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATG---------------QAFQALSGHSGHVLSL-YNWGGATVLSG   67 (93)
Q Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~---------------~~~~~~~~~~~~v~~~-~~~~~~~~~s~   67 (93)
                      ....|+.|..+    ..+++++| .||.+++..+.+.               ..-+++.+|++.|..+ |+...+.+-|.
T Consensus        15 vkL~c~~WNke----~gyIAcgG-~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtS   89 (1189)
T KOG2041|consen   15 VKLHCAEWNKE----SGYIACGG-ADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTS   89 (1189)
T ss_pred             ceEEEEEEccc----CCeEEecc-ccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccccccccc
Confidence            45778999877    67788887 5999999876532               1225678999999999 99999999999


Q ss_pred             cCCCcEEEEeCCCCc
Q psy14456         68 SHDRTVRFWDLRTRG   82 (93)
Q Consensus        68 ~~~~~i~~~d~~~~~   82 (93)
                      ..+|.|++|-+-+|+
T Consensus        90 Dt~GlIiVWmlykgs  104 (1189)
T KOG2041|consen   90 DTSGLIIVWMLYKGS  104 (1189)
T ss_pred             CCCceEEEEeeeccc
Confidence            999999999876553

>KOG1275|consensus

Probab=97.87  E-value=9.7e-05  Score=48.30  Aligned_cols=66  Identities=17%  Similarity=0.287  Sum_probs=52.9

Q ss_pred             ceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEEEecCCCEEEEecC---------CCcEEEEeCCCCceeeE
Q psy14456         20 SLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWGGATVLSGSH---------DRTVRFWDLRTRGCTNV   86 (93)
Q Consensus        20 ~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~---------~~~i~~~d~~~~~~~~~   86 (93)
                      +.++.+|...|.|.+.|.++-+.++++..|.+.+..+ +-.|+++++|+.         |..++|||+|.-..+..
T Consensus       187 nr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf-Dv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~P  261 (1118)
T KOG1275|consen  187 NRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF-DVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSP  261 (1118)
T ss_pred             CcEEEeecccceEEeecCCcCceeeeeeccccceeee-eccCCeEEEeecccccccccccchhhhhhhhhhhccCC
Confidence            3455556689999999999999999999999998885 668999998864         45789999997544433

>KOG4190|consensus

Probab=97.86  E-value=1.7e-05  Score=49.46  Aligned_cols=75  Identities=15%  Similarity=0.225  Sum_probs=52.7

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCC-------ceeEEeeccccceEEE-EecCCCEEEEecCCCcE
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATG-------QAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTV   73 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~-------~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i   73 (93)
                      |+..|..++--.+    .+.++++. .|.+|++|.++..       -|..+++.|+.++..+ |-.+.+.++++  |+-+
T Consensus       734 H~~~iRai~AidN----ENSFiSAS-kDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~gi  806 (1034)
T KOG4190|consen  734 HQEKIRAIAAIDN----ENSFISAS-KDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGI  806 (1034)
T ss_pred             cHHHhHHHHhccc----ccceeecc-CCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcc
Confidence            3444444443333    34456655 6999999998642       3566778999999999 88888787765  8899


Q ss_pred             EEEeCCCCce
Q psy14456         74 RFWDLRTRGC   83 (93)
Q Consensus        74 ~~~d~~~~~~   83 (93)
                      .+||.--+..
T Consensus       807 HlWDPFigr~  816 (1034)
T KOG4190|consen  807 HLWDPFIGRL  816 (1034)
T ss_pred             eeecccccch
Confidence            9999765543

>KOG1240|consensus

Probab=97.79  E-value=0.00062  Score=46.03  Aligned_cols=83  Identities=13%  Similarity=0.120  Sum_probs=62.1

Q ss_pred             ccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEee-ccccceEEE-Eec---CCCEEEEec--CCCcEEE
Q psy14456          3 DGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALS-GHSGHVLSL-YNW---GGATVLSGS--HDRTVRF   75 (93)
Q Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~-~~~~~v~~~-~~~---~~~~~~s~~--~~~~i~~   75 (93)
                      .+.|++++.+|.    +++++.+. ..|.+-+||++-+.++..+. ++..++..+ .++   .....++++  ..+.+.+
T Consensus      1195 hG~vTSi~idp~----~~WlviGt-s~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~ 1269 (1431)
T KOG1240|consen 1195 HGLVTSIVIDPW----CNWLVIGT-SRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVST 1269 (1431)
T ss_pred             ccceeEEEecCC----ceEEEEec-CCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceee
Confidence            478999999998    67877765 59999999999888877664 445666666 444   235555443  5688999


Q ss_pred             EeCCCCceeeEecCc
Q psy14456         76 WDLRTRGCTNVLTPI   90 (93)
Q Consensus        76 ~d~~~~~~~~~~~~~   90 (93)
                      |++.+|.+.+++...
T Consensus      1270 wn~~~g~~~~vl~~s 1284 (1431)
T KOG1240|consen 1270 WNMETGLRQTVLWAS 1284 (1431)
T ss_pred             eecccCcceEEEEcC
Confidence            999999888887543

>KOG1517|consensus

Probab=97.78  E-value=0.00025  Score=47.31  Aligned_cols=78  Identities=24%  Similarity=0.276  Sum_probs=54.0

Q ss_pred             EEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEee-ccccceEEE-Eec-CCCEEEEecCCCcEEEEeCCCCc---
Q psy14456          9 VCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALS-GHSGHVLSL-YNW-GGATVLSGSHDRTVRFWDLRTRG---   82 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~-~~~~~v~~~-~~~-~~~~~~s~~~~~~i~~~d~~~~~---   82 (93)
                      ++|...    ...++++|. -..|++||.....++..+. +...-++.+ -+. .++.++.|..||.+++||.|...   
T Consensus      1171 ~dWqQ~----~G~Ll~tGd-~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds 1245 (1387)
T KOG1517|consen 1171 VDWQQQ----SGHLLVTGD-VRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDS 1245 (1387)
T ss_pred             eehhhh----CCeEEecCC-eeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccc
Confidence            445444    445677773 8999999999888777664 334455666 332 57899999999999999988542   


Q ss_pred             eeeEecCcc
Q psy14456         83 CTNVLTPIT   91 (93)
Q Consensus        83 ~~~~~~~~~   91 (93)
                      .+...+.|.
T Consensus      1246 ~v~~~R~h~ 1254 (1387)
T KOG1517|consen 1246 LVCVYREHN 1254 (1387)
T ss_pred             cceeecccC
Confidence            344555443

>KOG1912|consensus

Probab=97.77  E-value=0.0004  Score=45.05  Aligned_cols=87  Identities=21%  Similarity=0.224  Sum_probs=66.1

Q ss_pred             CCccceeEEEEEecCCC-------CcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-Eec---CC-CEEEEec
Q psy14456          1 MHDGTVRDVCFIEDTSN-------KSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNW---GG-ATVLSGS   68 (93)
Q Consensus         1 ~h~~~v~~~~~~~~~~~-------~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~---~~-~~~~s~~   68 (93)
                      .|+..|+.+.|.|....       ..+++++++...|.|.+||...+..+..+..+...+..+ |-+   +. ..++.-.
T Consensus        53 ~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh  132 (1062)
T KOG1912|consen   53 LHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIH  132 (1062)
T ss_pred             cCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEec
Confidence            47889999999986422       135677777789999999999998888888888888777 644   23 4556666


Q ss_pred             CCCcEEEEeCCCCceeeEe
Q psy14456         69 HDRTVRFWDLRTRGCTNVL   87 (93)
Q Consensus        69 ~~~~i~~~d~~~~~~~~~~   87 (93)
                      ...++.+|+..+|+..-..
T Consensus       133 ~ss~lvLwntdtG~k~Wk~  151 (1062)
T KOG1912|consen  133 GSSTLVLWNTDTGEKFWKY  151 (1062)
T ss_pred             CCcEEEEEEccCCceeecc
Confidence            7789999998888765444

>KOG4547|consensus

Probab=97.76  E-value=0.00034  Score=43.43  Aligned_cols=70  Identities=26%  Similarity=0.462  Sum_probs=54.0

Q ss_pred             cceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecC-----CCEEE-EecCCCcEEEE
Q psy14456          4 GTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWG-----GATVL-SGSHDRTVRFW   76 (93)
Q Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~-----~~~~~-s~~~~~~i~~~   76 (93)
                      ..+..++++|+    +..++++   .+.|.+||+++++.+..|.+|.+++.++ |-..     |.+++ +...+..+.+|
T Consensus       145 ~~~~sl~is~D----~~~l~~a---s~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w  217 (541)
T KOG4547|consen  145 PLVSSLCISPD----GKILLTA---SRQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVW  217 (541)
T ss_pred             CccceEEEcCC----CCEEEec---cceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEE
Confidence            35667788888    5555553   5899999999999999999999999999 8665     45555 44577788888


Q ss_pred             eCCC
Q psy14456         77 DLRT   80 (93)
Q Consensus        77 d~~~   80 (93)
                      -++.
T Consensus       218 ~v~~  221 (541)
T KOG4547|consen  218 VVEK  221 (541)
T ss_pred             EEEc
Confidence            6654

>KOG4532|consensus

Probab=97.71  E-value=0.00099  Score=38.40  Aligned_cols=72  Identities=14%  Similarity=0.101  Sum_probs=53.9

Q ss_pred             eeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCce--eE-EeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCCC
Q psy14456          6 VRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQA--FQ-ALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTR   81 (93)
Q Consensus         6 v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~--~~-~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~   81 (93)
                      +..+.++++    ++++++.| +...|..|.++....  +. .....+..-.+. |+.....++++..|+.+.+||+|..
T Consensus       161 ~ns~~~snd----~~~~~~Vg-ds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~  235 (344)
T KOG4532|consen  161 QNSLHYSND----PSWGSSVG-DSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNM  235 (344)
T ss_pred             eeeeEEcCC----CceEEEec-CCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEeccc
Confidence            678888888    88999988 588899888765432  23 222333344555 8888889999999999999999975


Q ss_pred             c
Q psy14456         82 G   82 (93)
Q Consensus        82 ~   82 (93)
                      .
T Consensus       236 ~  236 (344)
T KOG4532|consen  236 A  236 (344)
T ss_pred             c
Confidence            3

>PRK02889 tolB translocation protein TolB; Provisional

Probab=97.70  E-value=0.00069  Score=41.33  Aligned_cols=71  Identities=18%  Similarity=0.212  Sum_probs=47.0

Q ss_pred             ccceeEEEEEecCCCCcceEEEeeeC--CCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEE-EecCCCcEEEEeC
Q psy14456          3 DGTVRDVCFIEDTSNKSSLLISGGAG--DCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVL-SGSHDRTVRFWDL   78 (93)
Q Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~g~~--~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~-s~~~~~~i~~~d~   78 (93)
                      .+.+...+|+|+    ++.++.....  ...|.+||+.++.... +....+..... |+|++..++ +.+.++...+|.+
T Consensus       195 ~~~v~~p~wSPD----G~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~  269 (427)
T PRK02889        195 PEPIISPAWSPD----GTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTV  269 (427)
T ss_pred             CCCcccceEcCC----CCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEE
Confidence            456788999999    6666544322  3468999998886543 33233444566 999998776 5667777666643

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=97.69  E-value=0.00064  Score=39.87  Aligned_cols=68  Identities=12%  Similarity=0.255  Sum_probs=45.6

Q ss_pred             EEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeecc---ccceEEE-EecCCCEEEEec-CCCcEEEEeCC
Q psy14456          8 DVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGH---SGHVLSL-YNWGGATVLSGS-HDRTVRFWDLR   79 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~---~~~v~~~-~~~~~~~~~s~~-~~~~i~~~d~~   79 (93)
                      .+.++|+    +++++++...++.|.+|+++.......+.++   ......+ ++++++.+++++ .++.+.+|++.
T Consensus       232 ~i~~~pd----g~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        232 DIHITPD----GRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             eEEECCC----CCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence            4778888    6777776544789999998654321122222   1233467 899998888665 58999999774

>PRK05137 tolB translocation protein TolB; Provisional

Probab=97.67  E-value=0.0016  Score=39.78  Aligned_cols=76  Identities=16%  Similarity=0.164  Sum_probs=48.6

Q ss_pred             cceeEEEEEecCCCCcceEEEeeeCCCe--EEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEec-CC--CcEEEEe
Q psy14456          4 GTVRDVCFIEDTSNKSSLLISGGAGDCK--IYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGS-HD--RTVRFWD   77 (93)
Q Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~g~~~~~--v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~-~~--~~i~~~d   77 (93)
                      +.+...+|+|+    ++.++.+.+.++.  |.++|+.++.. ..+..+....... |+|++..++..+ .+  ..+.++|
T Consensus       246 g~~~~~~~SPD----G~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d  320 (435)
T PRK05137        246 GMTFAPRFSPD----GRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMN  320 (435)
T ss_pred             CcccCcEECCC----CCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEE
Confidence            45667889999    6665544434555  66678777654 3454455445566 999998877554 33  3677888


Q ss_pred             CCCCcee
Q psy14456         78 LRTRGCT   84 (93)
Q Consensus        78 ~~~~~~~   84 (93)
                      +..+...
T Consensus       321 ~~g~~~~  327 (435)
T PRK05137        321 ADGSNPR  327 (435)
T ss_pred             CCCCCeE
Confidence            7765443

>PRK03629 tolB translocation protein TolB; Provisional

Probab=97.66  E-value=0.0018  Score=39.61  Aligned_cols=74  Identities=18%  Similarity=0.085  Sum_probs=46.5

Q ss_pred             ceeEEEEEecCCCCcceEEEeeeCCC--eEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecC-CC--cEEEEeC
Q psy14456          5 TVRDVCFIEDTSNKSSLLISGGAGDC--KIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSH-DR--TVRFWDL   78 (93)
Q Consensus         5 ~v~~~~~~~~~~~~~~~~~~~g~~~~--~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~-~~--~i~~~d~   78 (93)
                      .+....|+|+    ++.++...+.++  .|.+||++++.... +......+... |+|++..++..+. ++  .+..+|+
T Consensus       244 ~~~~~~~SPD----G~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~  318 (429)
T PRK03629        244 HNGAPAFSPD----GSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNI  318 (429)
T ss_pred             CcCCeEECCC----CCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEEC
Confidence            3456789999    666665433344  58888988776544 33334455667 9999998765543 34  4444566


Q ss_pred             CCCce
Q psy14456         79 RTRGC   83 (93)
Q Consensus        79 ~~~~~   83 (93)
                      .++..
T Consensus       319 ~~g~~  323 (429)
T PRK03629        319 NGGAP  323 (429)
T ss_pred             CCCCe
Confidence            65543

>PRK04922 tolB translocation protein TolB; Provisional

Probab=97.65  E-value=0.0011  Score=40.50  Aligned_cols=77  Identities=23%  Similarity=0.217  Sum_probs=50.4

Q ss_pred             ccceeEEEEEecCCCCcceEEEeeeC--CCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEE-EecCCC--cEEEE
Q psy14456          3 DGTVRDVCFIEDTSNKSSLLISGGAG--DCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVL-SGSHDR--TVRFW   76 (93)
Q Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~g~~--~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~-s~~~~~--~i~~~   76 (93)
                      ...+....|+|+    ++.++.....  ...+.+|++.++.... +....+..... |+|++..++ +.+.++  .|.+|
T Consensus       203 ~~~v~~p~wSpD----g~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~  277 (433)
T PRK04922        203 AEPILSPAWSPD----GKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVM  277 (433)
T ss_pred             CCccccccCCCC----CCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEEEE
Confidence            346788899999    6666654422  3468999998776533 22333334456 999998765 444444  68999


Q ss_pred             eCCCCcee
Q psy14456         77 DLRTRGCT   84 (93)
Q Consensus        77 d~~~~~~~   84 (93)
                      |+.++...
T Consensus       278 d~~~g~~~  285 (433)
T PRK04922        278 DLGSRQLT  285 (433)
T ss_pred             ECCCCCeE
Confidence            99877643

>PRK00178 tolB translocation protein TolB; Provisional

Probab=97.65  E-value=0.0021  Score=39.14  Aligned_cols=77  Identities=17%  Similarity=0.183  Sum_probs=49.4

Q ss_pred             ccceeEEEEEecCCCCcceEEEeeeCC--CeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEE-EecCCC--cEEEE
Q psy14456          3 DGTVRDVCFIEDTSNKSSLLISGGAGD--CKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVL-SGSHDR--TVRFW   76 (93)
Q Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~g~~~--~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~-s~~~~~--~i~~~   76 (93)
                      ...+....|+|+    ++.++....++  ..|.+|++.++.... +....+..... |+|++..++ +...++  .+.++
T Consensus       198 ~~~~~~p~wSpD----G~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~  272 (430)
T PRK00178        198 REPILSPRWSPD----GKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVM  272 (430)
T ss_pred             CCceeeeeECCC----CCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEE
Confidence            356788899999    66665544233  468888988776533 22223333456 999998776 444444  67888


Q ss_pred             eCCCCcee
Q psy14456         77 DLRTRGCT   84 (93)
Q Consensus        77 d~~~~~~~   84 (93)
                      |+.++...
T Consensus       273 d~~~~~~~  280 (430)
T PRK00178        273 DLASRQLS  280 (430)
T ss_pred             ECCCCCeE
Confidence            98876543

>KOG1409|consensus

Probab=97.65  E-value=0.0017  Score=38.53  Aligned_cols=40  Identities=33%  Similarity=0.690  Sum_probs=35.4

Q ss_pred             eeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCCC
Q psy14456         42 AFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTR   81 (93)
Q Consensus        42 ~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~   81 (93)
                      .+..+.+|.+.+.+. |.+....+.+|..|..+.+||+.-.
T Consensus       189 ~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~  229 (404)
T KOG1409|consen  189 LITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGR  229 (404)
T ss_pred             eEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCC
Confidence            456778899999999 9998899999999999999998744

>PRK03629 tolB translocation protein TolB; Provisional

Probab=97.65  E-value=0.0024  Score=39.07  Aligned_cols=78  Identities=17%  Similarity=0.177  Sum_probs=49.9

Q ss_pred             cceeEEEEEecCCCCcceEEEee--eCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEe-cCCC--cEEEEe
Q psy14456          4 GTVRDVCFIEDTSNKSSLLISGG--AGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSG-SHDR--TVRFWD   77 (93)
Q Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~g--~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~-~~~~--~i~~~d   77 (93)
                      ..+...+|+|+    ++.++...  ..+..+.+|++.+++... +....+..... |+|++..++.. ..++  .|.+||
T Consensus       199 ~~~~~p~wSPD----G~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d  273 (429)
T PRK03629        199 QPLMSPAWSPD----GSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMD  273 (429)
T ss_pred             CceeeeEEcCC----CCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEE
Confidence            46788999999    66665432  124578899988776433 22222233356 99999877643 4444  588899


Q ss_pred             CCCCceeeE
Q psy14456         78 LRTRGCTNV   86 (93)
Q Consensus        78 ~~~~~~~~~   86 (93)
                      +.++...+.
T Consensus       274 ~~tg~~~~l  282 (429)
T PRK03629        274 LASGQIRQV  282 (429)
T ss_pred             CCCCCEEEc
Confidence            987765443

>PRK02889 tolB translocation protein TolB; Provisional

Probab=97.59  E-value=0.0014  Score=39.98  Aligned_cols=75  Identities=15%  Similarity=-0.011  Sum_probs=45.6

Q ss_pred             ceeEEEEEecCCCCcceEEEeeeCCCeEEEEeC--CCCceeEEeeccccceEEE-EecCCCEEEEecCCC---cEEEEeC
Q psy14456          5 TVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDC--ATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDR---TVRFWDL   78 (93)
Q Consensus         5 ~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~---~i~~~d~   78 (93)
                      ......|+|+    ++.++..+.+++...+|.+  ..+.... +.......... |+|+++.++..+.++   .+.+||+
T Consensus       285 ~~~~~~wSpD----G~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~  359 (427)
T PRK02889        285 IDTEPFFSPD----GRSIYFTSDRGGAPQIYRMPASGGAAQR-VTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDL  359 (427)
T ss_pred             CCcCeEEcCC----CCEEEEEecCCCCcEEEEEECCCCceEE-EecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEEC
Confidence            3566789999    6666554445666667755  3443322 22112222345 899999887655443   6899999


Q ss_pred             CCCcee
Q psy14456         79 RTRGCT   84 (93)
Q Consensus        79 ~~~~~~   84 (93)
                      .++...
T Consensus       360 ~~g~~~  365 (427)
T PRK02889        360 ATGQVT  365 (427)
T ss_pred             CCCCeE
Confidence            877643

>KOG0882|consensus

Probab=97.55  E-value=0.00035  Score=42.64  Aligned_cols=84  Identities=13%  Similarity=0.116  Sum_probs=65.5

Q ss_pred             CCccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCC------Cce---------eEEeeccccceEEE-EecCCCEE
Q psy14456          1 MHDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCAT------GQA---------FQALSGHSGHVLSL-YNWGGATV   64 (93)
Q Consensus         1 ~h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~------~~~---------~~~~~~~~~~v~~~-~~~~~~~~   64 (93)
                      +|.++|.++.+.+.    ++.+++.. ..|.|.-|..+.      ...         +..+...++...++ |+|++..+
T Consensus       142 lH~sPV~~i~y~qa----~Ds~vSiD-~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qi  216 (558)
T KOG0882|consen  142 LHFSPVKKIRYNQA----GDSAVSID-ISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQI  216 (558)
T ss_pred             cccCceEEEEeecc----ccceeecc-ccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcc
Confidence            68999999999998    67777765 589999998762      111         22233345566788 99999999


Q ss_pred             EEecCCCcEEEEeCCCCceeeEecC
Q psy14456         65 LSGSHDRTVRFWDLRTRGCTNVLTP   89 (93)
Q Consensus        65 ~s~~~~~~i~~~d~~~~~~~~~~~~   89 (93)
                      .+-+.|..|++++.+++...+.+..
T Consensus       217 stl~~DrkVR~F~~KtGklvqeiDE  241 (558)
T KOG0882|consen  217 STLNPDRKVRGFVFKTGKLVQEIDE  241 (558)
T ss_pred             cccCcccEEEEEEeccchhhhhhhc
Confidence            9999999999999999988777754

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=97.53  E-value=0.0054  Score=36.79  Aligned_cols=74  Identities=15%  Similarity=0.088  Sum_probs=55.7

Q ss_pred             EEecCCCCcceEEEeee---------CCCeEEEEeCCCCceeEEeecccc-------ceEEE-EecCCCEEEEec-C-CC
Q psy14456         11 FIEDTSNKSSLLISGGA---------GDCKIYVTDCATGQAFQALSGHSG-------HVLSL-YNWGGATVLSGS-H-DR   71 (93)
Q Consensus        11 ~~~~~~~~~~~~~~~g~---------~~~~v~~~~~~~~~~~~~~~~~~~-------~v~~~-~~~~~~~~~s~~-~-~~   71 (93)
                      ++|+    ++.++.+.+         ++..|.+||..+.+.+..+..-..       ....+ ++++++.++... . +.
T Consensus        53 ~spD----g~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~  128 (352)
T TIGR02658        53 VASD----GSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSP  128 (352)
T ss_pred             ECCC----CCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCC
Confidence            6777    666666666         799999999999998877753111       11244 899999888766 3 68


Q ss_pred             cEEEEeCCCCceeeEec
Q psy14456         72 TVRFWDLRTRGCTNVLT   88 (93)
Q Consensus        72 ~i~~~d~~~~~~~~~~~   88 (93)
                      .+.+.|+.+++.+..+.
T Consensus       129 ~V~VvD~~~~kvv~ei~  145 (352)
T TIGR02658       129 AVGVVDLEGKAFVRMMD  145 (352)
T ss_pred             EEEEEECCCCcEEEEEe
Confidence            99999999998877664

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK04922 tolB translocation protein TolB; Provisional

Probab=97.50  E-value=0.0039  Score=38.18  Aligned_cols=74  Identities=14%  Similarity=0.092  Sum_probs=45.3

Q ss_pred             eeEEEEEecCCCCcceEEEeeeCCCe--EEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCC---CcEEEEeCC
Q psy14456          6 VRDVCFIEDTSNKSSLLISGGAGDCK--IYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHD---RTVRFWDLR   79 (93)
Q Consensus         6 v~~~~~~~~~~~~~~~~~~~g~~~~~--v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~---~~i~~~d~~   79 (93)
                      ....+|+|+    ++.++.+..+++.  +.++++.+++... +.......... |+|++..++..+.+   ..+.+||+.
T Consensus       294 ~~~~~~spD----G~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~  368 (433)
T PRK04922        294 DTEPTWAPD----GKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLS  368 (433)
T ss_pred             ccceEECCC----CCEEEEEECCCCCceEEEEECCCCCeEE-eecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECC
Confidence            456789998    6666655445555  5555666655432 22122223346 89999988755432   368899998


Q ss_pred             CCcee
Q psy14456         80 TRGCT   84 (93)
Q Consensus        80 ~~~~~   84 (93)
                      ++...
T Consensus       369 ~g~~~  373 (433)
T PRK04922        369 TGSVR  373 (433)
T ss_pred             CCCeE
Confidence            77643

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=97.49  E-value=0.0041  Score=37.59  Aligned_cols=75  Identities=23%  Similarity=0.225  Sum_probs=49.2

Q ss_pred             cceeEEEEEecCCCCcceEEEeeeCC--CeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEE-EecCC--CcEEEEe
Q psy14456          4 GTVRDVCFIEDTSNKSSLLISGGAGD--CKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVL-SGSHD--RTVRFWD   77 (93)
Q Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~g~~~--~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~-s~~~~--~~i~~~d   77 (93)
                      ..+...+|+|+    ++.++.....+  ..|.+|++.++.... +..+....... |+|++..++ +.+.+  ..+.+||
T Consensus       190 ~~~~~p~~Spd----g~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d  264 (417)
T TIGR02800       190 EPILSPAWSPD----GQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMD  264 (417)
T ss_pred             CceecccCCCC----CCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccEEEEE
Confidence            35777889998    66666544222  578999998876533 23344445567 999988665 44444  4588888


Q ss_pred             CCCCce
Q psy14456         78 LRTRGC   83 (93)
Q Consensus        78 ~~~~~~   83 (93)
                      +.++..
T Consensus       265 ~~~~~~  270 (417)
T TIGR02800       265 LDGKQL  270 (417)
T ss_pred             CCCCCE
Confidence            887653

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=97.40  E-value=0.003  Score=38.71  Aligned_cols=76  Identities=17%  Similarity=0.104  Sum_probs=47.1

Q ss_pred             eeEEEEEecCCCCcceEEEeeeCCCeEEEEeC--CC-CceeEEeeccccceEEE-EecCCCEEEEecCC---CcEEEEeC
Q psy14456          6 VRDVCFIEDTSNKSSLLISGGAGDCKIYVTDC--AT-GQAFQALSGHSGHVLSL-YNWGGATVLSGSHD---RTVRFWDL   78 (93)
Q Consensus         6 v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~-~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~---~~i~~~d~   78 (93)
                      ....+|+|+    ++.++....+++...+|.+  .. +.....+......+... |+|++..++....+   ..+.+||+
T Consensus       283 ~~~p~wSPD----G~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl  358 (428)
T PRK01029        283 QGNPSFSPD----GTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDL  358 (428)
T ss_pred             cCCeEECCC----CCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEEC
Confidence            356789999    6665554445676566643  32 22334444344455566 99999988755432   46889999


Q ss_pred             CCCceee
Q psy14456         79 RTRGCTN   85 (93)
Q Consensus        79 ~~~~~~~   85 (93)
                      .+++..+
T Consensus       359 ~~g~~~~  365 (428)
T PRK01029        359 ATGRDYQ  365 (428)
T ss_pred             CCCCeEE
Confidence            8776543

>KOG2079|consensus

Probab=97.38  E-value=0.0018  Score=43.42  Aligned_cols=65  Identities=25%  Similarity=0.424  Sum_probs=48.4

Q ss_pred             ccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE----EecCCCEEEEecCCCc
Q psy14456          3 DGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL----YNWGGATVLSGSHDRT   72 (93)
Q Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~----~~~~~~~~~s~~~~~~   72 (93)
                      +++|++++|+.+    +..+++ |-.+|.|.+||...+..++.+..+..+...+    +..++..+.++...|.
T Consensus       130 ~~~Vtsvafn~d----g~~l~~-G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs  198 (1206)
T KOG2079|consen  130 QGPVTSVAFNQD----GSLLLA-GLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS  198 (1206)
T ss_pred             CCcceeeEecCC----Cceecc-ccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc
Confidence            478999999988    565555 5569999999999999888887665544433    4445667788877775

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=97.35  E-value=0.012  Score=36.77  Aligned_cols=77  Identities=10%  Similarity=0.220  Sum_probs=60.7

Q ss_pred             cceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCC----CcEEEEeC
Q psy14456          4 GTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHD----RTVRFWDL   78 (93)
Q Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~----~~i~~~d~   78 (93)
                      +.|..+..+|+    +++++.+. ....+.+.|++++.....-+...+-|..+ |++++.+++-+--+    ..|+++|+
T Consensus       402 g~I~av~vs~d----GK~~vvaN-dr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm  476 (668)
T COG4946         402 GNIEAVKVSPD----GKKVVVAN-DRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDM  476 (668)
T ss_pred             cceEEEEEcCC----CcEEEEEc-CceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEec
Confidence            56888999998    77777765 58889999999998766556667788899 99999999876555    46889999


Q ss_pred             CCCceee
Q psy14456         79 RTRGCTN   85 (93)
Q Consensus        79 ~~~~~~~   85 (93)
                      ..++...
T Consensus       477 ~~~Kiy~  483 (668)
T COG4946         477 DGGKIYD  483 (668)
T ss_pred             CCCeEEE
Confidence            8766443

>KOG0309|consensus

Probab=97.33  E-value=0.00084  Score=43.52  Aligned_cols=84  Identities=21%  Similarity=0.335  Sum_probs=58.8

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCc-eeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQ-AFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLR   79 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~-~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~   79 (93)
                      |+..|+.+-|.|..   ...++++. -|..+..||+++.. .+..+..-.+....+ |+.....+...+....+.+||.+
T Consensus       113 hsraitd~n~~~q~---pdVlatcs-vdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r  188 (1081)
T KOG0309|consen  113 HSRAITDINFNPQH---PDVLATCS-VDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLR  188 (1081)
T ss_pred             CccceeccccCCCC---Ccceeecc-ccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEecc
Confidence            67889999999873   44555554 69999999998754 455554444444566 87755555566788899999999


Q ss_pred             CCc-eeeEecC
Q psy14456         80 TRG-CTNVLTP   89 (93)
Q Consensus        80 ~~~-~~~~~~~   89 (93)
                      .|. ++..+.+
T Consensus       189 ~gs~pl~s~K~  199 (1081)
T KOG0309|consen  189 KGSTPLCSLKG  199 (1081)
T ss_pred             CCCcceEEecc
Confidence            875 4544444

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=97.30  E-value=0.0079  Score=40.91  Aligned_cols=72  Identities=17%  Similarity=0.203  Sum_probs=51.8

Q ss_pred             eEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEee-------------ccccceEEE-EecCCCEEEEecCCCc
Q psy14456          7 RDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALS-------------GHSGHVLSL-YNWGGATVLSGSHDRT   72 (93)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~-------------~~~~~v~~~-~~~~~~~~~s~~~~~~   72 (93)
                      ..++++++    +..+++-. .++.|++||..++.......             +.-.....+ ++++++++++-..++.
T Consensus       807 ~Gvavd~d----G~LYVADs-~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~  881 (1057)
T PLN02919        807 LGVLCAKD----GQIYVADS-YNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSL  881 (1057)
T ss_pred             ceeeEeCC----CcEEEEEC-CCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCE
Confidence            46777777    56666554 59999999988765442211             111245677 8899998888889999


Q ss_pred             EEEEeCCCCce
Q psy14456         73 VRFWDLRTRGC   83 (93)
Q Consensus        73 i~~~d~~~~~~   83 (93)
                      |++||+.++..
T Consensus       882 Irvid~~~~~~  892 (1057)
T PLN02919        882 IRYLDLNKGEA  892 (1057)
T ss_pred             EEEEECCCCcc
Confidence            99999998764

>PRK01029 tolB translocation protein TolB; Provisional

Probab=97.29  E-value=0.012  Score=36.10  Aligned_cols=78  Identities=17%  Similarity=0.190  Sum_probs=50.1

Q ss_pred             ceeEEEEEecCCCCcceEEEeeeCC--CeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEE-EecC--CCcEEEEeC
Q psy14456          5 TVRDVCFIEDTSNKSSLLISGGAGD--CKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVL-SGSH--DRTVRFWDL   78 (93)
Q Consensus         5 ~v~~~~~~~~~~~~~~~~~~~g~~~--~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~-s~~~--~~~i~~~d~   78 (93)
                      .+....|+|+    ++.++.....+  ..|.+||+.++.... +......+... |+|++..++ +...  ...+.++|+
T Consensus       328 ~~~~p~wSPD----G~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl  402 (428)
T PRK01029        328 NSSCPAWSPD----GKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISL  402 (428)
T ss_pred             CccceeECCC----CCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCCEEEEEECCCCCceEEEEEC
Confidence            4567889999    67666554333  468899998886543 32222344566 999988776 3332  356788898


Q ss_pred             CCCceeeEe
Q psy14456         79 RTRGCTNVL   87 (93)
Q Consensus        79 ~~~~~~~~~   87 (93)
                      ..+...+..
T Consensus       403 ~~g~~~~Lt  411 (428)
T PRK01029        403 ITKKTRKIV  411 (428)
T ss_pred             CCCCEEEee
Confidence            877654443

>KOG4532|consensus

Probab=97.29  E-value=0.011  Score=34.29  Aligned_cols=68  Identities=16%  Similarity=0.091  Sum_probs=44.9

Q ss_pred             ceEEEeeeCCCeEEEEeCCCCcee-----EEeeccccceEEE-EecCCC--EEEEecCCCcEEEEeCCCCceeeEe
Q psy14456         20 SLLISGGAGDCKIYVTDCATGQAF-----QALSGHSGHVLSL-YNWGGA--TVLSGSHDRTVRFWDLRTRGCTNVL   87 (93)
Q Consensus        20 ~~~~~~g~~~~~v~~~~~~~~~~~-----~~~~~~~~~v~~~-~~~~~~--~~~s~~~~~~i~~~d~~~~~~~~~~   87 (93)
                      +..++.+.+||++.+||++.....     .+-..|++.+... |++.+.  +|+-.-.=+.+.+.|+|++...+.+
T Consensus       215 ~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I  290 (344)
T KOG4532|consen  215 DLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVI  290 (344)
T ss_pred             cceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEE
Confidence            344455569999999999865322     1123578888888 998553  3444445578899999987644433

>KOG1912|consensus

Probab=97.28  E-value=0.0014  Score=42.72  Aligned_cols=81  Identities=17%  Similarity=0.142  Sum_probs=60.6

Q ss_pred             ccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCC------------CEEEEecC
Q psy14456          3 DGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGG------------ATVLSGSH   69 (93)
Q Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~------------~~~~s~~~   69 (93)
                      ...-.+++|+|.|      +++=|+ ...|.+-|..+-+.+..+.-|...|+.+ |.|..            ..++++..
T Consensus        15 ~sN~~A~Dw~~~G------LiAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~   87 (1062)
T KOG1912|consen   15 RSNRNAADWSPSG------LIAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADI   87 (1062)
T ss_pred             cccccccccCccc------eEEEec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccc
Confidence            3445677888863      344454 7889999999999899898899999988 87732            24567778


Q ss_pred             CCcEEEEeCCCCceeeEecCc
Q psy14456         70 DRTVRFWDLRTRGCTNVLTPI   90 (93)
Q Consensus        70 ~~~i~~~d~~~~~~~~~~~~~   90 (93)
                      .|.|.+||...+..+..+..+
T Consensus        88 ~GrIil~d~~~~s~~~~l~~~  108 (1062)
T KOG1912|consen   88 SGRIILVDFVLASVINWLSHS  108 (1062)
T ss_pred             cCcEEEEEehhhhhhhhhcCC
Confidence            899999999987766655544

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.28  E-value=0.012  Score=36.19  Aligned_cols=80  Identities=13%  Similarity=0.227  Sum_probs=57.4

Q ss_pred             ceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEE-E-E-ecCCC-----------------EE
Q psy14456          5 TVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLS-L-Y-NWGGA-----------------TV   64 (93)
Q Consensus         5 ~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~-~-~-~~~~~-----------------~~   64 (93)
                      .+.++..+|.    +.+.+++. .-|.|.++|+..+..+..+++..+.-.. + . .....                 ++
T Consensus       309 ~~~~i~~sP~----~~laA~tD-slGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~Lv  383 (415)
T PF14655_consen  309 EGESICLSPS----GRLAAVTD-SLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLV  383 (415)
T ss_pred             eEEEEEECCC----CCEEEEEc-CCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEE
Confidence            4778888887    67766665 4999999999999888888887654332 2 1 11111                 23


Q ss_pred             EEecCCCcEEEEeCCCCceeeEecC
Q psy14456         65 LSGSHDRTVRFWDLRTRGCTNVLTP   89 (93)
Q Consensus        65 ~s~~~~~~i~~~d~~~~~~~~~~~~   89 (93)
                      +-....+.+.+|+++.|..+..+..
T Consensus       384 IyaprRg~lEvW~~~~g~Rv~a~~v  408 (415)
T PF14655_consen  384 IYAPRRGILEVWSMRQGPRVAAFNV  408 (415)
T ss_pred             EEeccCCeEEEEecCCCCEEEEEEe
Confidence            3456789999999999998877753

>PRK04792 tolB translocation protein TolB; Provisional

Probab=97.27  E-value=0.0087  Score=36.95  Aligned_cols=75  Identities=16%  Similarity=0.134  Sum_probs=46.5

Q ss_pred             cceeEEEEEecCCCCcceEEEeeeCCC--eEEEEeCCCCceeEEeeccccceEEE-EecCCCEEE-EecCCCc--EEEEe
Q psy14456          4 GTVRDVCFIEDTSNKSSLLISGGAGDC--KIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVL-SGSHDRT--VRFWD   77 (93)
Q Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~g~~~~--~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~-s~~~~~~--i~~~d   77 (93)
                      ..+....|+|+    ++.++....+++  .|.++|+.+++... +.......... |+|++..++ +.+.++.  |.++|
T Consensus       218 ~~~~~p~wSPD----G~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d  292 (448)
T PRK04792        218 EPLMSPAWSPD----GRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVD  292 (448)
T ss_pred             CcccCceECCC----CCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEE
Confidence            35668899999    666655433333  57788888776432 22222222356 999998776 4455554  77778


Q ss_pred             CCCCce
Q psy14456         78 LRTRGC   83 (93)
Q Consensus        78 ~~~~~~   83 (93)
                      +.+++.
T Consensus       293 l~tg~~  298 (448)
T PRK04792        293 IATKAL  298 (448)
T ss_pred             CCCCCe
Confidence            877654

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=97.23  E-value=0.016  Score=34.89  Aligned_cols=57  Identities=18%  Similarity=0.220  Sum_probs=46.5

Q ss_pred             CeEEEEeCCCCceeEEeeccccceEEE-EecCCC-EEEEec-CCCcEEEEeCCCCceeeEe
Q psy14456         30 CKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGA-TVLSGS-HDRTVRFWDLRTRGCTNVL   87 (93)
Q Consensus        30 ~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~-~~~s~~-~~~~i~~~d~~~~~~~~~~   87 (93)
                      +.|.++|..+++.+..+.- ...+..+ +++++. ++++.+ .++.+.+.|..+++.++.+
T Consensus       279 ~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       279 RFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             CEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence            6899999999998887753 3356677 999988 777555 6788999999999988887

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2321|consensus

Probab=97.22  E-value=0.002  Score=40.60  Aligned_cols=65  Identities=23%  Similarity=0.414  Sum_probs=51.1

Q ss_pred             EEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCCCceeeEe
Q psy14456         22 LISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRGCTNVL   87 (93)
Q Consensus        22 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~   87 (93)
                      ++.+|+ ...|.=++++.|+-+..+....+.++++ .++...++++|..++.+-.||.+..+....+
T Consensus       148 ly~~gs-g~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l  213 (703)
T KOG2321|consen  148 LYLVGS-GSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTL  213 (703)
T ss_pred             EEEeec-CcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheee
Confidence            444454 5566666888888888887777888888 8998889999999999999999987654444

>KOG3617|consensus

Probab=97.21  E-value=0.00052  Score=45.17  Aligned_cols=70  Identities=13%  Similarity=0.328  Sum_probs=56.5

Q ss_pred             ceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCC
Q psy14456          5 TVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLR   79 (93)
Q Consensus         5 ~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~   79 (93)
                      .+++++|+|.     ..+++.|=.-|.+.+|...+.+--.....|..++..+ |+++|..+.++..-+.+.+|.+.
T Consensus        61 hatSLCWHpe-----~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   61 HATSLCWHPE-----EFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             ehhhhccChH-----HHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            4667899986     5566666668889999887766554556799999999 99999999999999999999655

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=97.17  E-value=0.018  Score=34.35  Aligned_cols=76  Identities=20%  Similarity=0.260  Sum_probs=50.3

Q ss_pred             ceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCC--CCce--eEEeeccccceEEE-EecCCCEEEEec-CCCcEEEEeC
Q psy14456          5 TVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCA--TGQA--FQALSGHSGHVLSL-YNWGGATVLSGS-HDRTVRFWDL   78 (93)
Q Consensus         5 ~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~--~~~~--~~~~~~~~~~v~~~-~~~~~~~~~s~~-~~~~i~~~d~   78 (93)
                      ....+.++|+    +++++++......|.+|+++  ++..  +..+.........+ +++++++++.+. .++.|.+|++
T Consensus       246 ~~~~i~ispd----g~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~  321 (345)
T PF10282_consen  246 APAEIAISPD----GRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDI  321 (345)
T ss_dssp             SEEEEEE-TT----SSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred             CceeEEEecC----CCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEE
Confidence            4667889999    77777776568899999984  3332  23333223345778 999999888665 6678998865


Q ss_pred             --CCCcee
Q psy14456         79 --RTRGCT   84 (93)
Q Consensus        79 --~~~~~~   84 (93)
                        .+|...
T Consensus       322 d~~tG~l~  329 (345)
T PF10282_consen  322 DPDTGKLT  329 (345)
T ss_dssp             ETTTTEEE
T ss_pred             eCCCCcEE
Confidence              455543

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=97.16  E-value=0.015  Score=35.57  Aligned_cols=74  Identities=19%  Similarity=0.118  Sum_probs=46.4

Q ss_pred             eeEEEEEecCCCCcceEEEeeeCCC--eEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEec-CC--CcEEEEeCC
Q psy14456          6 VRDVCFIEDTSNKSSLLISGGAGDC--KIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGS-HD--RTVRFWDLR   79 (93)
Q Consensus         6 v~~~~~~~~~~~~~~~~~~~g~~~~--~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~-~~--~~i~~~d~~   79 (93)
                      +....|+|+    ++.++.+.+.++  .|.++|+.++... .+..+....... |+|++..++..+ .+  ..+.++|+.
T Consensus       245 ~~~~~~SpD----G~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~  319 (430)
T PRK00178        245 NGAPAWSPD----GSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVN  319 (430)
T ss_pred             cCCeEECCC----CCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECC
Confidence            446889998    666654333454  5777888877643 344444444556 899988765443 33  357777877


Q ss_pred             CCcee
Q psy14456         80 TRGCT   84 (93)
Q Consensus        80 ~~~~~   84 (93)
                      ++...
T Consensus       320 ~g~~~  324 (430)
T PRK00178        320 GGRAE  324 (430)
T ss_pred             CCCEE
Confidence            76543

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.15  E-value=0.0031  Score=26.72  Aligned_cols=30  Identities=17%  Similarity=0.202  Sum_probs=24.7

Q ss_pred             cceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCC
Q psy14456          4 GTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCA   38 (93)
Q Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~   38 (93)
                      +.|.+++|+|.    .++++.+. .+|.|.++.++
T Consensus        12 ~~v~~~~w~P~----mdLiA~~t-~~g~v~v~Rl~   41 (47)
T PF12894_consen   12 SRVSCMSWCPT----MDLIALGT-EDGEVLVYRLN   41 (47)
T ss_pred             CcEEEEEECCC----CCEEEEEE-CCCeEEEEECC
Confidence            57999999998    77766654 69999999884

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=97.11  E-value=0.019  Score=34.79  Aligned_cols=73  Identities=16%  Similarity=0.173  Sum_probs=46.4

Q ss_pred             eeEEEEEecCCCCcceEEEeeeCCC--eEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCC---cEEEEeCC
Q psy14456          6 VRDVCFIEDTSNKSSLLISGGAGDC--KIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDR---TVRFWDLR   79 (93)
Q Consensus         6 v~~~~~~~~~~~~~~~~~~~g~~~~--~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~---~i~~~d~~   79 (93)
                      .....|+|+    ++.++....+.+  .|.++++..+... .+..+....... |++++..++....+.   .+.++|+.
T Consensus       280 ~~~~~~s~d----g~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~  354 (417)
T TIGR02800       280 DTEPSWSPD----GKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLD  354 (417)
T ss_pred             CCCEEECCC----CCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCC
Confidence            345688888    666655443444  4666777666543 333334444566 899998888766554   78888887


Q ss_pred             CCce
Q psy14456         80 TRGC   83 (93)
Q Consensus        80 ~~~~   83 (93)
                      ++..
T Consensus       355 ~~~~  358 (417)
T TIGR02800       355 GGGE  358 (417)
T ss_pred             CCCe
Confidence            7543

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=97.11  E-value=0.019  Score=35.56  Aligned_cols=74  Identities=19%  Similarity=0.148  Sum_probs=46.0

Q ss_pred             eeEEEEEecCCCCcceEEEeeeCCCe--EEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEec-CC--CcEEEEeCC
Q psy14456          6 VRDVCFIEDTSNKSSLLISGGAGDCK--IYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGS-HD--RTVRFWDLR   79 (93)
Q Consensus         6 v~~~~~~~~~~~~~~~~~~~g~~~~~--v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~-~~--~~i~~~d~~   79 (93)
                      .....|+|+    ++.++.+.+.++.  |.++|+.++.. ..+..+....... |+|++..++..+ .+  ..+.++|+.
T Consensus       264 ~~~~~wSPD----G~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~  338 (448)
T PRK04792        264 NGAPRFSPD----GKKLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLA  338 (448)
T ss_pred             cCCeeECCC----CCEEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECC
Confidence            346789999    6666654445665  66677776654 3344444444566 999988776443 33  356666777


Q ss_pred             CCcee
Q psy14456         80 TRGCT   84 (93)
Q Consensus        80 ~~~~~   84 (93)
                      +++..
T Consensus       339 ~g~~~  343 (448)
T PRK04792        339 SGKVS  343 (448)
T ss_pred             CCCEE
Confidence            66543

>KOG4190|consensus

Probab=97.07  E-value=0.0024  Score=40.39  Aligned_cols=40  Identities=13%  Similarity=0.159  Sum_probs=32.6

Q ss_pred             ccceEEE-EecCCCEEEEecCCCcEEEEeCCCCceeeEecC
Q psy14456         50 SGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRGCTNVLTP   89 (93)
Q Consensus        50 ~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~   89 (93)
                      ++.+.++ ..+.|++++.+-.+|.+.+.|.++|+.+..+++
T Consensus       876 na~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrp  916 (1034)
T KOG4190|consen  876 NALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRP  916 (1034)
T ss_pred             chheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCc
Confidence            4556777 888899999888999999999999987776554

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=97.05  E-value=0.044  Score=37.57  Aligned_cols=75  Identities=19%  Similarity=0.175  Sum_probs=50.7

Q ss_pred             eeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEee------------c---------cccceEEE-EecCCCE
Q psy14456          6 VRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALS------------G---------HSGHVLSL-YNWGGAT   63 (93)
Q Consensus         6 v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~------------~---------~~~~v~~~-~~~~~~~   63 (93)
                      ...++++|+    +..++.+...++.|++||++++.......            +         .-.....+ +++++.+
T Consensus       742 P~GIavspd----G~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~L  817 (1057)
T PLN02919        742 PSGISLSPD----LKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQI  817 (1057)
T ss_pred             ccEEEEeCC----CCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcE
Confidence            346888888    56455445568999999988764321000            0         01123467 8888888


Q ss_pred             EEEecCCCcEEEEeCCCCcee
Q psy14456         64 VLSGSHDRTVRFWDLRTRGCT   84 (93)
Q Consensus        64 ~~s~~~~~~i~~~d~~~~~~~   84 (93)
                      +++-..++.|.+||..++...
T Consensus       818 YVADs~N~rIrviD~~tg~v~  838 (1057)
T PLN02919        818 YVADSYNHKIKKLDPATKRVT  838 (1057)
T ss_pred             EEEECCCCEEEEEECCCCeEE
Confidence            888889999999999876554

>KOG1832|consensus

Probab=97.04  E-value=0.0021  Score=42.77  Aligned_cols=82  Identities=17%  Similarity=0.278  Sum_probs=60.4

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEec-CCC-cEEEEeC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGS-HDR-TVRFWDL   78 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~-~~~-~i~~~d~   78 (93)
                      |++..+|++|+-+    .+.++. |+..|.|+++++.+|.......+|.+.++.+ -+-++..+++.+ ..+ ..-+|+.
T Consensus      1100 ~~~~fTc~afs~~----~~hL~v-G~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~ 1174 (1516)
T KOG1832|consen 1100 ETALFTCIAFSGG----TNHLAV-GSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDA 1174 (1516)
T ss_pred             cccceeeEEeecC----CceEEe-eeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhcc
Confidence            4677899999976    444444 5579999999999999988888999999988 666777766554 333 5678887


Q ss_pred             CC-CceeeEec
Q psy14456         79 RT-RGCTNVLT   88 (93)
Q Consensus        79 ~~-~~~~~~~~   88 (93)
                      .+ +.....|.
T Consensus      1175 ~s~~~~~Hsf~ 1185 (1516)
T KOG1832|consen 1175 SSTGGPRHSFD 1185 (1516)
T ss_pred             ccccCcccccc
Confidence            64 33444443

>KOG2079|consensus

Probab=97.01  E-value=0.0034  Score=42.20  Aligned_cols=72  Identities=22%  Similarity=0.405  Sum_probs=51.9

Q ss_pred             eEEEeeeCCCeEEEEeCCCCce-eEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCCCceeeEecCccCC
Q psy14456         21 LLISGGAGDCKIYVTDCATGQA-FQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRGCTNVLTPITVP   93 (93)
Q Consensus        21 ~~~~~g~~~~~v~~~~~~~~~~-~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~~~   93 (93)
                      +++.+ +..|.+...|....-. ...=..-.+++.++ |+.++..++.|-.+|.|.+||...+..++.+..+..|
T Consensus       101 ~ivi~-Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap  174 (1206)
T KOG2079|consen  101 PIVIG-TSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAP  174 (1206)
T ss_pred             eEEEE-cCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCc
Confidence            34443 3478887777654311 11112345688999 9999999999999999999999999998888766554

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.90  E-value=0.0072  Score=25.58  Aligned_cols=32  Identities=16%  Similarity=0.165  Sum_probs=27.1

Q ss_pred             ccceEEE-EecCCCEEEEecCCCcEEEEeCCCCc
Q psy14456         50 SGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRG   82 (93)
Q Consensus        50 ~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~   82 (93)
                      .+.+..+ |+|...+++.+..++.+.++.+ +++
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q   43 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ   43 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence            3467788 9999999999999999999988 443

>KOG4497|consensus

Probab=96.88  E-value=0.011  Score=35.30  Aligned_cols=60  Identities=13%  Similarity=0.109  Sum_probs=41.5

Q ss_pred             cceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEec
Q psy14456          4 GTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGS   68 (93)
Q Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~   68 (93)
                      +.+...+|+|+    ++.++....-+-.|.+|.+.+...... +.-+..+..+ |++++++.+-++
T Consensus        92 agls~~~WSPd----grhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg~f~ai~s  152 (447)
T KOG4497|consen   92 AGLSSISWSPD----GRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDGQFCAILS  152 (447)
T ss_pred             CcceeeeECCC----cceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCCCceeeeee
Confidence            56888999999    544444444689999999988776442 2233344666 899998766543

>KOG1334|consensus

Probab=96.85  E-value=0.0022  Score=39.60  Aligned_cols=73  Identities=30%  Similarity=0.479  Sum_probs=55.2

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEe-eccccceEEE-Eec--CCCEEEEecCCCcEEEEe
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQAL-SGHSGHVLSL-YNW--GGATVLSGSHDRTVRFWD   77 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~-~~~~~~v~~~-~~~--~~~~~~s~~~~~~i~~~d   77 (93)
                      |.+-|..+.|...    +..+++++ .|..+.+||-..+.....+ .+|...+.-- |-|  +.+.+++++.|+++++-.
T Consensus       141 H~GcVntV~FN~~----Gd~l~SgS-DD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~  215 (559)
T KOG1334|consen  141 HKGCVNTVHFNQR----GDVLASGS-DDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE  215 (559)
T ss_pred             CCCccceeeeccc----CceeeccC-ccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeee
Confidence            7788888888776    66666655 6999999998777766555 4777766555 655  457889999999998876


Q ss_pred             CC
Q psy14456         78 LR   79 (93)
Q Consensus        78 ~~   79 (93)
                      +.
T Consensus       216 i~  217 (559)
T KOG1334|consen  216 IL  217 (559)
T ss_pred             ec
Confidence            54

>KOG4714|consensus

Probab=96.81  E-value=0.011  Score=34.20  Aligned_cols=35  Identities=20%  Similarity=0.322  Sum_probs=29.2

Q ss_pred             CCccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCC
Q psy14456          1 MHDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCAT   39 (93)
Q Consensus         1 ~h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~   39 (93)
                      .|++++..+-|+|..   .+.++++. +||.+..||..+
T Consensus       221 ahk~~i~eV~FHpk~---p~~Lft~s-edGslw~wdas~  255 (319)
T KOG4714|consen  221 AHKAEIWEVHFHPKN---PEHLFTCS-EDGSLWHWDAST  255 (319)
T ss_pred             HhhhhhhheeccCCC---chheeEec-CCCcEEEEcCCC
Confidence            378899999999985   67788876 699999999763

>KOG1354|consensus

Probab=96.80  E-value=0.0023  Score=38.13  Aligned_cols=81  Identities=15%  Similarity=0.248  Sum_probs=52.1

Q ss_pred             ceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCce------e----------EEeeccccceEEE-EecCCCEEEEe
Q psy14456          5 TVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQA------F----------QALSGHSGHVLSL-YNWGGATVLSG   67 (93)
Q Consensus         5 ~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~------~----------~~~~~~~~~v~~~-~~~~~~~~~s~   67 (93)
                      -|++-.|+|..   ...++-+.+ .|.|++-|++....      +          --+..-...|..+ |++.|+++++.
T Consensus       215 VITsaEFhp~~---cn~f~YSSS-KGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsR  290 (433)
T KOG1354|consen  215 VITSAEFHPHH---CNVFVYSSS-KGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSR  290 (433)
T ss_pred             HHhhhccCHhH---ccEEEEecC-CCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEe
Confidence            46667788874   345555554 99999999873210      1          1111223567788 99999999877


Q ss_pred             cCCCcEEEEeCC-CCceeeEecCc
Q psy14456         68 SHDRTVRFWDLR-TRGCTNVLTPI   90 (93)
Q Consensus        68 ~~~~~i~~~d~~-~~~~~~~~~~~   90 (93)
                      .. -++++||+. ...+...+..|
T Consensus       291 Dy-ltvk~wD~nme~~pv~t~~vh  313 (433)
T KOG1354|consen  291 DY-LTVKLWDLNMEAKPVETYPVH  313 (433)
T ss_pred             cc-ceeEEEeccccCCcceEEeeh
Confidence            42 589999994 44555555444

>KOG2314|consensus

Probab=96.80  E-value=0.0092  Score=37.74  Aligned_cols=75  Identities=15%  Similarity=0.147  Sum_probs=52.5

Q ss_pred             eEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecC-----------CCcEE
Q psy14456          7 RDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSH-----------DRTVR   74 (93)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~-----------~~~i~   74 (93)
                      +-+.|||.    +.++++-  ...-|.+|--..-..++.+. |.+ +..+ |+|...+|+|=+.           ...++
T Consensus       214 tyv~wSP~----GTYL~t~--Hk~GI~lWGG~~f~r~~RF~-Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~  285 (698)
T KOG2314|consen  214 TYVRWSPK----GTYLVTF--HKQGIALWGGESFDRIQRFY-HPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLI  285 (698)
T ss_pred             eeEEecCC----ceEEEEE--eccceeeecCccHHHHHhcc-CCC-ceeeecCCccceEEEecCCccccCcccCCCceEE
Confidence            45789998    6777765  35667788655444445553 433 4667 9999888887542           26799


Q ss_pred             EEeCCCCceeeEecC
Q psy14456         75 FWDLRTRGCTNVLTP   89 (93)
Q Consensus        75 ~~d~~~~~~~~~~~~   89 (93)
                      +||+++|...+.|..
T Consensus       286 IWDI~tG~lkrsF~~  300 (698)
T KOG2314|consen  286 IWDIATGLLKRSFPV  300 (698)
T ss_pred             EEEccccchhcceec
Confidence            999999998887765

>PRK02888 nitrous-oxide reductase; Validated

Probab=96.73  E-value=0.023  Score=36.59  Aligned_cols=72  Identities=14%  Similarity=0.142  Sum_probs=52.1

Q ss_pred             ceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCce------------eEEeeccccceEEEEecCCCEEEEecCCCc
Q psy14456          5 TVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQA------------FQALSGHSGHVLSLYNWGGATVLSGSHDRT   72 (93)
Q Consensus         5 ~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~------------~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~   72 (93)
                      ....+.++|+    +++++.++-.+..+.+.|+.+...            .....--.+++..-|..++....|...|+.
T Consensus       322 sPHGV~vSPD----GkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsq  397 (635)
T PRK02888        322 NPHGVNTSPD----GKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQ  397 (635)
T ss_pred             CccceEECCC----CCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecce
Confidence            3456888999    777777776799999999876442            233322233433338888888888889999


Q ss_pred             EEEEeCCC
Q psy14456         73 VRFWDLRT   80 (93)
Q Consensus        73 i~~~d~~~   80 (93)
                      +..||+.+
T Consensus       398 v~kwn~~~  405 (635)
T PRK02888        398 IVKWNIEA  405 (635)
T ss_pred             eEEEehHH
Confidence            99999876

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=96.67  E-value=0.012  Score=24.46  Aligned_cols=34  Identities=21%  Similarity=0.314  Sum_probs=25.2

Q ss_pred             cceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCC
Q psy14456          4 GTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCAT   39 (93)
Q Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~   39 (93)
                      ++|.++.|+|+... .++++-+- ..+.+.++|+++
T Consensus         1 GAvR~~kFsP~~~~-~DLL~~~E-~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGG-NDLLAWAE-HQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCc-ccEEEEEc-cCCeEEEEEccc
Confidence            57899999986311 25666665 589999999885

It contains a characteristic DLL sequence motif.

>KOG0309|consensus

Probab=96.67  E-value=0.0022  Score=41.78  Aligned_cols=71  Identities=27%  Similarity=0.450  Sum_probs=52.1

Q ss_pred             eeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCc-eeEEeeccccceEEE-Eec-CCCEEEEecCCCcEEEEeCCCC
Q psy14456          6 VRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQ-AFQALSGHSGHVLSL-YNW-GGATVLSGSHDRTVRFWDLRTR   81 (93)
Q Consensus         6 v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~-~~~~~~~~~~~v~~~-~~~-~~~~~~s~~~~~~i~~~d~~~~   81 (93)
                      ...++|.-.    ...++++. ....+.+||.+.+. ++..+++|...++.+ |.. ....+.+++.|++++.||+.+.
T Consensus       161 asqVkwnyk----~p~vlass-hg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kS  234 (1081)
T KOG0309|consen  161 ASQVKWNYK----DPNVLASS-HGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKS  234 (1081)
T ss_pred             Cceeeeccc----Ccchhhhc-cCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccc
Confidence            345566544    33344444 48889999999875 467888898888888 766 3455678899999999999865

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=96.62  E-value=0.063  Score=32.16  Aligned_cols=71  Identities=15%  Similarity=0.220  Sum_probs=52.5

Q ss_pred             eeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCcee----EEeeccccceEEE-EecCCCEEEEec-CCCcEEEEeCC
Q psy14456          6 VRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAF----QALSGHSGHVLSL-YNWGGATVLSGS-HDRTVRFWDLR   79 (93)
Q Consensus         6 v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~----~~~~~~~~~v~~~-~~~~~~~~~s~~-~~~~i~~~d~~   79 (93)
                      +-...+.|+    ++++++....--.+.+|++..+...    ..+ .-.+....| |+|+++.....+ .+++|.+|++.
T Consensus       147 ~H~a~~tP~----~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~  221 (346)
T COG2706         147 VHSANFTPD----GRYLVVPDLGTDRIFLYDLDDGKLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYN  221 (346)
T ss_pred             cceeeeCCC----CCEEEEeecCCceEEEEEcccCcccccccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEc
Confidence            667778888    7888888766778999999876542    122 233455778 999998776555 78999999988


Q ss_pred             CC
Q psy14456         80 TR   81 (93)
Q Consensus        80 ~~   81 (93)
                      ..
T Consensus       222 ~~  223 (346)
T COG2706         222 PA  223 (346)
T ss_pred             CC
Confidence            73

>KOG0882|consensus

Probab=96.58  E-value=0.0015  Score=40.07  Aligned_cols=78  Identities=21%  Similarity=0.289  Sum_probs=58.1

Q ss_pred             CCccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCC--C-ceeEEeeccccceEEE-EecCCCEEEEecC-CCcEEE
Q psy14456          1 MHDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCAT--G-QAFQALSGHSGHVLSL-YNWGGATVLSGSH-DRTVRF   75 (93)
Q Consensus         1 ~h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~--~-~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~-~~~i~~   75 (93)
                      ||.+.|+.+...-     .++++++. .||.++.|....  + .-+..+..|...+..+ .+.++.++.|++. |..+++
T Consensus         7 mhrd~i~hv~~tk-----a~fiiqAS-lDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~Kv   80 (558)
T KOG0882|consen    7 MHRDVITHVFPTK-----AKFIIQAS-LDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKV   80 (558)
T ss_pred             cccceeeeEeeeh-----hheEEeee-cchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeE
Confidence            7888898876553     46666655 699999997543  2 2234556788888888 7889999999776 999999


Q ss_pred             EeCCCCcee
Q psy14456         76 WDLRTRGCT   84 (93)
Q Consensus        76 ~d~~~~~~~   84 (93)
                      +|++.-...
T Consensus        81 fDvEn~Dmi   89 (558)
T KOG0882|consen   81 FDVENFDMI   89 (558)
T ss_pred             EEeeccchh
Confidence            998865444

>KOG2041|consensus

Probab=96.58  E-value=0.0082  Score=39.26  Aligned_cols=73  Identities=19%  Similarity=0.199  Sum_probs=55.6

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeec--cccceEEE-EecCCCEEEEecCCCcEEEEeC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSG--HSGHVLSL-YNWGGATVLSGSHDRTVRFWDL   78 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~--~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~   78 (93)
                      |.+.|.-+.|...    .+++-++. .+|.|.+|-+-.++-...+..  .++.|.++ |+.+|+.++..-.||.+.+=.+
T Consensus        70 H~~sV~vvTWNe~----~QKLTtSD-t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsv  144 (1189)
T KOG2041|consen   70 HNASVMVVTWNEN----NQKLTTSD-TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSV  144 (1189)
T ss_pred             CcceEEEEEeccc----cccccccC-CCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEee
Confidence            7889999999877    67777776 699999999877765433322  34567788 9999999988888888777554


Q ss_pred             C
Q psy14456         79 R   79 (93)
Q Consensus        79 ~   79 (93)
                      .
T Consensus       145 d  145 (1189)
T KOG2041|consen  145 D  145 (1189)
T ss_pred             c
Confidence            4

>KOG3621|consensus

Probab=96.57  E-value=0.01  Score=38.32  Aligned_cols=70  Identities=16%  Similarity=0.195  Sum_probs=50.5

Q ss_pred             eeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCcee-----EEe-eccccceEEE-EecCCCEEEEecCCCcEEEEeC
Q psy14456          6 VRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAF-----QAL-SGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDL   78 (93)
Q Consensus         6 v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~-----~~~-~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~   78 (93)
                      +..+..+++     +++++.|...|.|.++.++.+...     ..+ +.|...|+++ |++++..+++|...|.+.+-.+
T Consensus        79 ~~~~~vs~~-----e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L  153 (726)
T KOG3621|consen   79 TCVRSVSSV-----EYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTEL  153 (726)
T ss_pred             EEEEEecch-----hHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEe
Confidence            344455554     556666667999999987754321     111 2467899999 9999999999999999988776


Q ss_pred             CC
Q psy14456         79 RT   80 (93)
Q Consensus        79 ~~   80 (93)
                      .+
T Consensus       154 ~s  155 (726)
T KOG3621|consen  154 DS  155 (726)
T ss_pred             ch
Confidence            65

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=96.38  E-value=0.021  Score=35.76  Aligned_cols=80  Identities=14%  Similarity=0.094  Sum_probs=55.5

Q ss_pred             ceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCC-------------
Q psy14456          5 TVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHD-------------   70 (93)
Q Consensus         5 ~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~-------------   70 (93)
                      ++....|+|.    +.++++.  ....|.+|.-...-.+..+.  ...+..+ |+|.+.+|.+=...             
T Consensus        34 p~~~~~~SP~----G~~l~~~--~~~~V~~~~g~~~~~l~~~~--~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~  105 (561)
T COG5354          34 PVAYVSESPL----GTYLFSE--HAAGVECWGGPSKAKLVRFR--HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFT  105 (561)
T ss_pred             chhheeecCc----chheehh--hccceEEccccchhheeeee--cCCceecccCcccceeeeeccCCccChhhccCCcc
Confidence            4667788887    6666664  36678888766555444442  3456777 89998888774332             


Q ss_pred             --CcEEEEeCCCCceeeEecCccC
Q psy14456         71 --RTVRFWDLRTRGCTNVLTPITV   92 (93)
Q Consensus        71 --~~i~~~d~~~~~~~~~~~~~~~   92 (93)
                        ..+.+||+.++..+..|.....
T Consensus       106 ~~n~~~vwd~~sg~iv~sf~~~~q  129 (561)
T COG5354         106 SKNNVFVWDIASGMIVFSFNGISQ  129 (561)
T ss_pred             ccCceeEEeccCceeEeeccccCC
Confidence              2599999999998888876543

>KOG4640|consensus

Probab=96.33  E-value=0.015  Score=37.13  Aligned_cols=52  Identities=19%  Similarity=0.297  Sum_probs=37.8

Q ss_pred             Ccccee-EEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEe-eccccceEEE-Ee
Q psy14456          2 HDGTVR-DVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQAL-SGHSGHVLSL-YN   58 (93)
Q Consensus         2 h~~~v~-~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~-~~~~~~v~~~-~~   58 (93)
                      |...++ +++|.|+    ++.++.+- .||+|++.|+.++..+... ......+.++ |+
T Consensus        60 p~~~v~~sL~W~~D----GkllaVg~-kdG~I~L~Dve~~~~l~~~~~s~e~~is~~~w~  114 (665)
T KOG4640|consen   60 PGENVTASLCWRPD----GKLLAVGF-KDGTIRLHDVEKGGRLVSFLFSVETDISKGIWD  114 (665)
T ss_pred             CCCccceeeeecCC----CCEEEEEe-cCCeEEEEEccCCCceeccccccccchheeecc
Confidence            455666 9999999    67666655 6999999999998776653 2344556666 64

>KOG1354|consensus

Probab=96.32  E-value=0.017  Score=34.61  Aligned_cols=75  Identities=16%  Similarity=0.208  Sum_probs=55.0

Q ss_pred             CCccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCC-ce--eEEeeccc-----cceEEE-Eec-CCCEEEEecCC
Q psy14456          1 MHDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATG-QA--FQALSGHS-----GHVLSL-YNW-GGATVLSGSHD   70 (93)
Q Consensus         1 ~h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~-~~--~~~~~~~~-----~~v~~~-~~~-~~~~~~s~~~~   70 (93)
                      .|+-.|.++++..+    ...++++  .|-.|.+|.++.. ++  +.-++.++     ..|++- |+| ..++++-.+..
T Consensus       162 aHtyhiNSIS~NsD----~Et~lSA--DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSK  235 (433)
T KOG1354|consen  162 AHTYHINSISVNSD----KETFLSA--DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSK  235 (433)
T ss_pred             cceeEeeeeeecCc----cceEeec--cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCC
Confidence            36777889988877    6777775  3999999998744 32  22334443     346677 998 56788888889


Q ss_pred             CcEEEEeCCCC
Q psy14456         71 RTVRFWDLRTR   81 (93)
Q Consensus        71 ~~i~~~d~~~~   81 (93)
                      |.|++-|+|+.
T Consensus       236 GtIrLcDmR~~  246 (433)
T KOG1354|consen  236 GTIRLCDMRQS  246 (433)
T ss_pred             CcEEEeechhh
Confidence            99999999954

>KOG4649|consensus

Probab=96.27  E-value=0.098  Score=30.56  Aligned_cols=66  Identities=21%  Similarity=0.298  Sum_probs=49.1

Q ss_pred             ceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE--EecCCCEEEEecCCCcEEEEeCCCCceeeEe
Q psy14456         20 SLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL--YNWGGATVLSGSHDRTVRFWDLRTRGCTNVL   87 (93)
Q Consensus        20 ~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~   87 (93)
                      +.++. |+..+.+.+.+.++|+....+..-. .+.+.  ..+++.++..+++|+.....|+++..++...
T Consensus        64 dfVV~-GCy~g~lYfl~~~tGs~~w~f~~~~-~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyks  131 (354)
T KOG4649|consen   64 DFVVL-GCYSGGLYFLCVKTGSQIWNFVILE-TVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKS  131 (354)
T ss_pred             CEEEE-EEccCcEEEEEecchhheeeeeehh-hhccceEEcCCCceEEEecCCCcEEEecccccceEEec
Confidence            44444 4479999999999997776665322 22222  6778999999999999999999988776653

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=95.94  E-value=0.17  Score=30.44  Aligned_cols=67  Identities=12%  Similarity=0.074  Sum_probs=41.7

Q ss_pred             eEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEEEecCCCEEEEecCCCcEEEEeCCCCceeeEec
Q psy14456         21 LLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWGGATVLSGSHDRTVRFWDLRTRGCTNVLT   88 (93)
Q Consensus        21 ~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~   88 (93)
                      .++... .++.+..+|..+++.+.....-......-....+..++.++.++.+.++|..+++.+..+.
T Consensus       281 ~vyv~~-~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~  347 (377)
T TIGR03300       281 RLYVTD-ADGVVVALDRRSGSELWKNDELKYRQLTAPAVVGGYLVVGDFEGYLHWLSREDGSFVARLK  347 (377)
T ss_pred             EEEEEC-CCCeEEEEECCCCcEEEccccccCCccccCEEECCEEEEEeCCCEEEEEECCCCCEEEEEE
Confidence            344433 4788888888777665433211111111111135678888899999999999998876665

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=95.87  E-value=0.16  Score=29.64  Aligned_cols=67  Identities=15%  Similarity=0.071  Sum_probs=45.5

Q ss_pred             cceEEEeeeCCCeEEEEeCCCC--ceeEEeecccc---ceEEE-EecCCCEEEEecCCCcEEEEeCCCCceeeEec
Q psy14456         19 SSLLISGGAGDCKIYVTDCATG--QAFQALSGHSG---HVLSL-YNWGGATVLSGSHDRTVRFWDLRTRGCTNVLT   88 (93)
Q Consensus        19 ~~~~~~~g~~~~~v~~~~~~~~--~~~~~~~~~~~---~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~   88 (93)
                      ++.++..  +|..|.+...+..  .++...+..++   .-..+ |+|++.+++.+...|+|.++|+.. ..+..+.
T Consensus         9 Gk~lAi~--qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~   81 (282)
T PF15492_consen    9 GKLLAIL--QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIP   81 (282)
T ss_pred             CcEEEEE--eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcC
Confidence            5655554  6888888776654  33343333322   23466 999999999999999999999874 4444444

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.85  E-value=0.043  Score=22.78  Aligned_cols=30  Identities=17%  Similarity=0.135  Sum_probs=23.4

Q ss_pred             ceEEE-EecCC---CEEEEecCCCcEEEEeCCCC
Q psy14456         52 HVLSL-YNWGG---ATVLSGSHDRTVRFWDLRTR   81 (93)
Q Consensus        52 ~v~~~-~~~~~---~~~~s~~~~~~i~~~d~~~~   81 (93)
                      .+.++ |+|.+   .+|+-.-..+.+.++|++++
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            46788 99743   47777778899999999964

It contains a characteristic DLL sequence motif.

>KOG3914|consensus

Probab=95.81  E-value=0.053  Score=32.87  Aligned_cols=53  Identities=11%  Similarity=0.218  Sum_probs=38.8

Q ss_pred             CCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCCCc
Q psy14456         29 DCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRG   82 (93)
Q Consensus        29 ~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~   82 (93)
                      ...+.+|....+.+ ..+.+|-+.+..+ ++++++.++++..|..|++-.+..-.
T Consensus       131 ~~~~di~s~~~~~~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f  184 (390)
T KOG3914|consen  131 VYSFDILSADSGRC-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATF  184 (390)
T ss_pred             ceeeeeecccccCc-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCccc
Confidence            34444544444333 3345899999999 99999999999999999997766543

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=95.76  E-value=0.16  Score=28.70  Aligned_cols=78  Identities=13%  Similarity=0.119  Sum_probs=51.7

Q ss_pred             eeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCC-c-e--eE---EeeccccceEEE-EecCCCEEEEecCCCcEEEEe
Q psy14456          6 VRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATG-Q-A--FQ---ALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWD   77 (93)
Q Consensus         6 v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~-~-~--~~---~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d   77 (93)
                      ...++|+|+    ++.++.+.+..+.|..++++.. . .  ..   .+..-.+..-.+ +..++++.++....+.|.++|
T Consensus       136 pNGi~~s~d----g~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~  211 (246)
T PF08450_consen  136 PNGIAFSPD----GKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFD  211 (246)
T ss_dssp             EEEEEEETT----SSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEE
T ss_pred             ccceEECCc----chheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEEC
Confidence            467899998    6666655556888888887532 2 1  12   222222235567 888999888888889999999


Q ss_pred             CCCCceeeEec
Q psy14456         78 LRTRGCTNVLT   88 (93)
Q Consensus        78 ~~~~~~~~~~~   88 (93)
                      .+ |+.+..+.
T Consensus       212 p~-G~~~~~i~  221 (246)
T PF08450_consen  212 PD-GKLLREIE  221 (246)
T ss_dssp             TT-SCEEEEEE
T ss_pred             CC-ccEEEEEc
Confidence            87 77666554

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=95.69  E-value=0.29  Score=31.03  Aligned_cols=74  Identities=18%  Similarity=0.208  Sum_probs=52.5

Q ss_pred             cceeEEEEEecCCCCcceEEEeeeCCC-eEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCCC
Q psy14456          4 GTVRDVCFIEDTSNKSSLLISGGAGDC-KIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTR   81 (93)
Q Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~g~~~~-~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~   81 (93)
                      +.|.-..+.-+    .+.++.+ ..|| .+-+++.++++. +.+...-+.|..+ .+++|..++.+.....+.+.|+.++
T Consensus       360 ~~VrY~r~~~~----~e~~vig-t~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididng  433 (668)
T COG4946         360 GGVRYRRIQVD----PEGDVIG-TNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNG  433 (668)
T ss_pred             CceEEEEEccC----CcceEEe-ccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCC
Confidence            33444444444    3334443 3577 899999887764 4455566788888 9999999999998899999999987


Q ss_pred             ce
Q psy14456         82 GC   83 (93)
Q Consensus        82 ~~   83 (93)
                      ..
T Consensus       434 nv  435 (668)
T COG4946         434 NV  435 (668)
T ss_pred             Ce
Confidence            54

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=95.63  E-value=0.019  Score=34.13  Aligned_cols=81  Identities=12%  Similarity=0.247  Sum_probs=50.8

Q ss_pred             ceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCce------e----------EEeeccccceEEE-EecCCCEEEEe
Q psy14456          5 TVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQA------F----------QALSGHSGHVLSL-YNWGGATVLSG   67 (93)
Q Consensus         5 ~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~------~----------~~~~~~~~~v~~~-~~~~~~~~~s~   67 (93)
                      -|++..|+|..   ...+.-+. ..|.|.+-|++....      +          .-+.+-...+..+ |++.++++++.
T Consensus       223 VItSaeFhp~~---cn~fmYSs-SkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsR  298 (460)
T COG5170         223 VITSAEFHPEM---CNVFMYSS-SKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSR  298 (460)
T ss_pred             HHhhcccCHhH---cceEEEec-CCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEe
Confidence            35666778763   22333333 489999999873210      1          1111223566788 99999999876


Q ss_pred             cCCCcEEEEeCCC-CceeeEecCc
Q psy14456         68 SHDRTVRFWDLRT-RGCTNVLTPI   90 (93)
Q Consensus        68 ~~~~~i~~~d~~~-~~~~~~~~~~   90 (93)
                      +. -++++||.+- ..+++++..|
T Consensus       299 dy-ltvkiwDvnm~k~pikTi~~h  321 (460)
T COG5170         299 DY-LTVKIWDVNMAKNPIKTIPMH  321 (460)
T ss_pred             cc-ceEEEEecccccCCceeechH
Confidence            43 5789999985 4467766544

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=95.51  E-value=0.23  Score=30.00  Aligned_cols=58  Identities=14%  Similarity=0.139  Sum_probs=39.1

Q ss_pred             eEEEEeCCCCceeEEeeccccceEEE-EecCCC-EEEEe-cCCCcEEEEeCCCCceeeEecC
Q psy14456         31 KIYVTDCATGQAFQALSGHSGHVLSL-YNWGGA-TVLSG-SHDRTVRFWDLRTRGCTNVLTP   89 (93)
Q Consensus        31 ~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~-~~~s~-~~~~~i~~~d~~~~~~~~~~~~   89 (93)
                      .|.++|+.+++.+..+.- ..++.++ .+.+.. +|++. ..++.+.+||..+|+.++.+.+
T Consensus       270 eVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~  330 (342)
T PF06433_consen  270 EVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ  330 (342)
T ss_dssp             EEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred             EEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence            366778888888887752 2345577 777544 45443 4689999999999999888765

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=95.47  E-value=0.35  Score=30.67  Aligned_cols=73  Identities=14%  Similarity=0.129  Sum_probs=48.7

Q ss_pred             ccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCC---CcEEEEeC
Q psy14456          3 DGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHD---RTVRFWDL   78 (93)
Q Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~---~~i~~~d~   78 (93)
                      .++|...+|.|.+   ..+.+.+|-.+-.+.++|++.. ....+.  ...-..+ |+|.+++++.++.|   +.+-+||.
T Consensus       274 ~~pVhdf~W~p~S---~~F~vi~g~~pa~~s~~~lr~N-l~~~~P--e~~rNT~~fsp~~r~il~agF~nl~gni~i~~~  347 (561)
T COG5354         274 KDPVHDFTWEPLS---SRFAVISGYMPASVSVFDLRGN-LRFYFP--EQKRNTIFFSPHERYILFAGFDNLQGNIEIFDP  347 (561)
T ss_pred             cccceeeeecccC---CceeEEecccccceeecccccc-eEEecC--CcccccccccCcccEEEEecCCccccceEEecc
Confidence            4789999999984   4444555566888999998766 333332  2222345 88888888776644   66788877


Q ss_pred             CCC
Q psy14456         79 RTR   81 (93)
Q Consensus        79 ~~~   81 (93)
                      ...
T Consensus       348 ~~r  350 (561)
T COG5354         348 AGR  350 (561)
T ss_pred             CCc
Confidence            654

>KOG2444|consensus

Probab=95.29  E-value=0.077  Score=30.12  Aligned_cols=59  Identities=20%  Similarity=0.257  Sum_probs=39.7

Q ss_pred             EEEeeeCCCeEEEEeCCCCceeEEeeccc-cceEEE-EecCCCEEEEe--cCCCcEEEEeCCC
Q psy14456         22 LISGGAGDCKIYVTDCATGQAFQALSGHS-GHVLSL-YNWGGATVLSG--SHDRTVRFWDLRT   80 (93)
Q Consensus        22 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~-~~v~~~-~~~~~~~~~s~--~~~~~i~~~d~~~   80 (93)
                      +..++..++.++.|+....+.+...-.|+ ...... ....+..+...  +.|..++.|++..
T Consensus       116 ~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  116 LGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             eeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence            44445579999999988877766555565 333333 44455666666  7788888888765

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=95.21  E-value=0.35  Score=29.02  Aligned_cols=71  Identities=17%  Similarity=0.244  Sum_probs=47.5

Q ss_pred             ceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCc--e--eEEee-ccccceEEE-EecCCCEEE-EecCCCcEEEEe
Q psy14456          5 TVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQ--A--FQALS-GHSGHVLSL-YNWGGATVL-SGSHDRTVRFWD   77 (93)
Q Consensus         5 ~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~--~--~~~~~-~~~~~v~~~-~~~~~~~~~-s~~~~~~i~~~d   77 (93)
                      ...++.++|+    ++.+++.......|.+|+++...  .  ...+. ........+ |++++..+. ..-.++.|.+++
T Consensus       145 h~H~v~~~pd----g~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~  220 (345)
T PF10282_consen  145 HPHQVVFSPD----GRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFD  220 (345)
T ss_dssp             CEEEEEE-TT----SSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred             cceeEEECCC----CCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEe
Confidence            3567899998    77777776667789999987654  2  12222 233455678 999988765 445788999998


Q ss_pred             CC
Q psy14456         78 LR   79 (93)
Q Consensus        78 ~~   79 (93)
                      +.
T Consensus       221 ~~  222 (345)
T PF10282_consen  221 YD  222 (345)
T ss_dssp             EE
T ss_pred             ec
Confidence            88

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG2314|consensus

Probab=94.86  E-value=0.23  Score=31.88  Aligned_cols=61  Identities=10%  Similarity=0.106  Sum_probs=41.0

Q ss_pred             ceeEEEEEecCCCCcceEEEeee--CCCeEEEEeCCCCceeEE-eeccccceEEE-EecCCCEEEEecCC
Q psy14456          5 TVRDVCFIEDTSNKSSLLISGGA--GDCKIYVTDCATGQAFQA-LSGHSGHVLSL-YNWGGATVLSGSHD   70 (93)
Q Consensus         5 ~v~~~~~~~~~~~~~~~~~~~g~--~~~~v~~~~~~~~~~~~~-~~~~~~~v~~~-~~~~~~~~~s~~~~   70 (93)
                      ..+.+.|+|.    +.+++.++.  ..|.+.++|..-..+... ...|. ..+.+ |.|.|+++.+++..
T Consensus       494 ~~N~vfwsPk----G~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~-~at~veWDPtGRYvvT~ss~  558 (698)
T KOG2314|consen  494 FANTVFWSPK----GRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHF-AATEVEWDPTGRYVVTSSSS  558 (698)
T ss_pred             ccceEEEcCC----CcEEEEEEecccccceEEEecchhhhhhccCcccc-ccccceECCCCCEEEEeeeh
Confidence            4578899998    788776663  478899998764322211 11232 23567 99999999988754

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=94.78  E-value=0.33  Score=31.07  Aligned_cols=36  Identities=11%  Similarity=0.146  Sum_probs=30.5

Q ss_pred             ccccceEEE-EecCCCEEEEecCCCcEEEEeCCCCce
Q psy14456         48 GHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRGC   83 (93)
Q Consensus        48 ~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~~   83 (93)
                      ...+.+.+. ++|+...++.|+.|+.+.+||...+..
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t  293 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVT  293 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCee
Confidence            456677777 999999999999999999999887643

>PRK04043 tolB translocation protein TolB; Provisional

Probab=94.58  E-value=0.63  Score=28.90  Aligned_cols=77  Identities=16%  Similarity=0.076  Sum_probs=44.5

Q ss_pred             ceeEEEEEecCCCCcceEEEeeeCC--CeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEec-CCC--cEEEEeC
Q psy14456          5 TVRDVCFIEDTSNKSSLLISGGAGD--CKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGS-HDR--TVRFWDL   78 (93)
Q Consensus         5 ~v~~~~~~~~~~~~~~~~~~~g~~~--~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~-~~~--~i~~~d~   78 (93)
                      ......|+|+    ++.++...+.+  ..|.++++..+.. ..+.......... |+|+++.++-.+ ..+  .|.+.|+
T Consensus       234 ~~~~~~~SPD----G~~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl  308 (419)
T PRK04043        234 MLVVSDVSKD----GSKLLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKL  308 (419)
T ss_pred             cEEeeEECCC----CCEEEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEEC
Confidence            3556789999    55544333234  4567777776653 3343333322334 899998665433 333  6777788


Q ss_pred             CCCceeeE
Q psy14456         79 RTRGCTNV   86 (93)
Q Consensus        79 ~~~~~~~~   86 (93)
                      .++...+.
T Consensus       309 ~~g~~~rl  316 (419)
T PRK04043        309 NSGSVEQV  316 (419)
T ss_pred             CCCCeEeC
Confidence            77765443

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=94.53  E-value=0.21  Score=31.79  Aligned_cols=28  Identities=29%  Similarity=0.595  Sum_probs=24.8

Q ss_pred             CCCEEEEecCCCcEEEEeCCCCceeeEe
Q psy14456         60 GGATVLSGSHDRTVRFWDLRTRGCTNVL   87 (93)
Q Consensus        60 ~~~~~~s~~~~~~i~~~d~~~~~~~~~~   87 (93)
                      +..++++.+.|+.+++||+.++.++...
T Consensus       229 ~~~~l~tl~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  229 DDTFLFTLSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             TTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred             CCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence            5678889999999999999999997665

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=94.32  E-value=0.42  Score=32.11  Aligned_cols=56  Identities=18%  Similarity=0.224  Sum_probs=38.2

Q ss_pred             eEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeC
Q psy14456         21 LLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDL   78 (93)
Q Consensus        21 ~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~   78 (93)
                      .++. |+.+|.||+||-...+....+.+-..+|..+ .+.+|.+++.-+ +..+.+++.
T Consensus       590 ~iav-gs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t  646 (794)
T PF08553_consen  590 YIAV-GSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT  646 (794)
T ss_pred             eEEE-EeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence            3444 4469999999943333334455667899999 999999876443 556666664

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=94.22  E-value=0.76  Score=28.40  Aligned_cols=71  Identities=17%  Similarity=0.188  Sum_probs=44.9

Q ss_pred             ccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEe--ec------cccceEEE-Eec-----CC---CEEE
Q psy14456          3 DGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQAL--SG------HSGHVLSL-YNW-----GG---ATVL   65 (93)
Q Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~--~~------~~~~v~~~-~~~-----~~---~~~~   65 (93)
                      +++|++++.+.-|      |++.|.++|.+.+.|++....++.-  ..      ....+.++ |..     ++   -.++
T Consensus        86 ~g~vtal~~S~iG------Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~  159 (395)
T PF08596_consen   86 QGPVTALKNSDIG------FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL  159 (395)
T ss_dssp             S-SEEEEEE-BTS------EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred             CCcEeEEecCCCc------EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence            6889999998652      5666668999999999766655432  11      22345566 653     22   3466


Q ss_pred             EecCCCcEEEEeCC
Q psy14456         66 SGSHDRTVRFWDLR   79 (93)
Q Consensus        66 s~~~~~~i~~~d~~   79 (93)
                      .|...|.+.+|.+.
T Consensus       160 vGTn~G~v~~fkIl  173 (395)
T PF08596_consen  160 VGTNSGNVLTFKIL  173 (395)
T ss_dssp             EEETTSEEEEEEEE
T ss_pred             EEeCCCCEEEEEEe
Confidence            77778988888765

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=94.21  E-value=0.35  Score=24.44  Aligned_cols=69  Identities=22%  Similarity=0.354  Sum_probs=38.9

Q ss_pred             eeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEEEecCCCEEEEecCCCcEEEEeC
Q psy14456          6 VRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWGGATVLSGSHDRTVRFWDL   78 (93)
Q Consensus         6 v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~   78 (93)
                      |+++++..-.....+.++.+ +.|..|++|+-+  ..+..+.. .+.+..+....+..++.+..+|+|-+|+-
T Consensus         2 V~al~~~d~d~dg~~eLlvG-s~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~   70 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVG-SDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGGGRFAYALANGTVGVYDR   70 (111)
T ss_pred             eeEEEEEecCCCCcceEEEe-cCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCCCEEEEEecCCEEEEEeC
Confidence            56666655221112344544 479999998743  44555543 34445552224466777777777766654

>PRK04043 tolB translocation protein TolB; Provisional

Probab=94.21  E-value=0.78  Score=28.50  Aligned_cols=74  Identities=12%  Similarity=0.115  Sum_probs=45.8

Q ss_pred             ceeEEEEEecCCCCcce-EE-Eeee-CCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEE-EecCC--CcEEEEe
Q psy14456          5 TVRDVCFIEDTSNKSSL-LI-SGGA-GDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVL-SGSHD--RTVRFWD   77 (93)
Q Consensus         5 ~v~~~~~~~~~~~~~~~-~~-~~g~-~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~-s~~~~--~~i~~~d   77 (93)
                      ......|+|+    ++. ++ ++.. ++..|.++|+.+++...... ..+..... |+|++..++ +.+.+  ..+.++|
T Consensus       189 ~~~~p~wSpD----G~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d  263 (419)
T PRK04043        189 LNIFPKWANK----EQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYD  263 (419)
T ss_pred             CeEeEEECCC----CCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEE
Confidence            4567899999    542 44 3332 25678888988876544332 33444455 999987664 44333  5677778


Q ss_pred             CCCCce
Q psy14456         78 LRTRGC   83 (93)
Q Consensus        78 ~~~~~~   83 (93)
                      +..+..
T Consensus       264 l~~g~~  269 (419)
T PRK04043        264 TNTKTL  269 (419)
T ss_pred             CCCCcE
Confidence            877653

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=94.08  E-value=0.54  Score=26.17  Aligned_cols=60  Identities=18%  Similarity=0.094  Sum_probs=39.0

Q ss_pred             CCeEEEEeCCCCceeEEeecc--ccceEEEEecCCCEEEEecCCCcEEEEeCCCCceeeEec
Q psy14456         29 DCKIYVTDCATGQAFQALSGH--SGHVLSLYNWGGATVLSGSHDRTVRFWDLRTRGCTNVLT   88 (93)
Q Consensus        29 ~~~v~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~   88 (93)
                      ++.|..+|.++++.+-...--  .....+....++..++.++.++.+..||..+|+.+..+.
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~   63 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFD   63 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEE
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEee
Confidence            678888898888877655321  122121122245566666788999999998888765554

...

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=94.08  E-value=0.73  Score=28.94  Aligned_cols=56  Identities=18%  Similarity=0.161  Sum_probs=33.9

Q ss_pred             cceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCC
Q psy14456         19 SSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLR   79 (93)
Q Consensus        19 ~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~   79 (93)
                      +..++..+  ++.|.+||..+++.+..+...  .+..+ |++++.+++-.+.+ .+.+++..
T Consensus       117 G~LL~~~~--~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~  173 (443)
T PF04053_consen  117 GNLLGVKS--SDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYN  173 (443)
T ss_dssp             SSSEEEEE--TTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-
T ss_pred             CcEEEEEC--CCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEec
Confidence            35555554  568999999999998888633  37788 99999988877644 55555443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=93.85  E-value=0.9  Score=29.14  Aligned_cols=61  Identities=13%  Similarity=0.021  Sum_probs=40.6

Q ss_pred             CCeEEEEeCCCCceeEEeeccccceEEEEecCCCEEEEecCCCcEEEEeCCCCceeeEecC
Q psy14456         29 DCKIYVTDCATGQAFQALSGHSGHVLSLYNWGGATVLSGSHDRTVRFWDLRTRGCTNVLTP   89 (93)
Q Consensus        29 ~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~   89 (93)
                      -+.+..+|+.+++.+-..............-.+.+++.+..++.++++|.++|+.+..++.
T Consensus       440 ~g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~  500 (527)
T TIGR03075       440 MGSLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKFKT  500 (527)
T ss_pred             ceeEEEEeCCCCceeeEecCCCCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeEEEeC
Confidence            3568888888887765543211111111222455777788899999999999998877653

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=93.66  E-value=0.2  Score=30.02  Aligned_cols=74  Identities=18%  Similarity=0.251  Sum_probs=51.8

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCce---eEEeeccc-----cceEEE-EecC-CCEEEEecCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQA---FQALSGHS-----GHVLSL-YNWG-GATVLSGSHDR   71 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~---~~~~~~~~-----~~v~~~-~~~~-~~~~~s~~~~~   71 (93)
                      |+-.+.+++|..+    .+.++++  .+-.|.+|.+.....   +..++.|+     ..+++. |+|. .+.+--.+..|
T Consensus       171 H~yhiNSiS~NsD----~et~lSa--DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG  244 (460)
T COG5170         171 HPYHINSISFNSD----KETLLSA--DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKG  244 (460)
T ss_pred             ceeEeeeeeecCc----hheeeec--cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCC
Confidence            5667888888777    6777775  489999999874322   33344554     345666 8884 45666667889


Q ss_pred             cEEEEeCCCC
Q psy14456         72 TVRFWDLRTR   81 (93)
Q Consensus        72 ~i~~~d~~~~   81 (93)
                      .|++-|+|+.
T Consensus       245 ~Ikl~DlRq~  254 (460)
T COG5170         245 EIKLNDLRQS  254 (460)
T ss_pred             cEEehhhhhh
Confidence            9999999954

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=93.56  E-value=0.55  Score=29.97  Aligned_cols=27  Identities=19%  Similarity=0.324  Sum_probs=21.4

Q ss_pred             cceEEEeeeCCCeEEEEeCCCCceeEEe
Q psy14456         19 SSLLISGGAGDCKIYVTDCATGQAFQAL   46 (93)
Q Consensus        19 ~~~~~~~g~~~~~v~~~~~~~~~~~~~~   46 (93)
                      ..++++.. +|+.+++||+.+++++...
T Consensus       230 ~~~l~tl~-~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  230 DTFLFTLS-RDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             TTEEEEEE-TTSEEEEEETTTTCEEEEE
T ss_pred             CCEEEEEe-CCCeEEEEECCCCeEEEEe
Confidence            56666665 7999999999999885544

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=93.29  E-value=1  Score=26.89  Aligned_cols=39  Identities=21%  Similarity=0.311  Sum_probs=32.3

Q ss_pred             cceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEe
Q psy14456          4 GTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQAL   46 (93)
Q Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~   46 (93)
                      +.+-+++++++    +..+++++.+.+.+.+||..++..+...
T Consensus       217 ~Y~gSIa~~~~----g~~ia~tsPrGg~~~~~d~~tg~~~~~~  255 (305)
T PF07433_consen  217 GYIGSIAADRD----GRLIAVTSPRGGRVAVWDAATGRLLGSV  255 (305)
T ss_pred             CceEEEEEeCC----CCEEEEECCCCCEEEEEECCCCCEeecc
Confidence            56788999988    6778777788999999999999876654

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=93.19  E-value=0.72  Score=28.78  Aligned_cols=72  Identities=15%  Similarity=0.129  Sum_probs=41.1

Q ss_pred             eEEEEEecCCCCcceEEEeeeCCCeEEEEeC--CCCceeEEeeccccceEEE-EecCCCEEEEe-cCCCc--EEEEeCCC
Q psy14456          7 RDVCFIEDTSNKSSLLISGGAGDCKIYVTDC--ATGQAFQALSGHSGHVLSL-YNWGGATVLSG-SHDRT--VRFWDLRT   80 (93)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~-~~~~~--i~~~d~~~   80 (93)
                      ..-+|+|+    +++++-+..+++...+|-+  ..+. +..+....+.-..- |+|+|+.++-. +..+.  |.+.+...
T Consensus       241 ~~P~fspD----G~~l~f~~~rdg~~~iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g  315 (425)
T COG0823         241 GAPAFSPD----GSKLAFSSSRDGSPDIYLMDLDGKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEG  315 (425)
T ss_pred             CCccCCCC----CCEEEEEECCCCCccEEEEcCCCCc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCC
Confidence            44578888    6777766667888776654  4444 33343222222223 89999887644 34444  44455555


Q ss_pred             Cce
Q psy14456         81 RGC   83 (93)
Q Consensus        81 ~~~   83 (93)
                      +..
T Consensus       316 ~~~  318 (425)
T COG0823         316 SQV  318 (425)
T ss_pred             Cce
Confidence            443

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=93.16  E-value=0.83  Score=25.42  Aligned_cols=67  Identities=19%  Similarity=0.263  Sum_probs=43.2

Q ss_pred             cceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEEEecCCCEEEEecCCCcEEEEeCCCCceeeEe
Q psy14456         19 SSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWGGATVLSGSHDRTVRFWDLRTRGCTNVL   87 (93)
Q Consensus        19 ~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~   87 (93)
                      +..++++. .++.+..+|..+|+.+..... ...+.......+..++.+..++.+..+|.++|..+..+
T Consensus        36 ~~~v~~~~-~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~  102 (238)
T PF13360_consen   36 GGRVYVAS-GDGNLYALDAKTGKVLWRFDL-PGPISGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSI  102 (238)
T ss_dssp             TTEEEEEE-TTSEEEEEETTTSEEEEEEEC-SSCGGSGEEEETTEEEEEETTSEEEEEETTTSCEEEEE
T ss_pred             CCEEEEEc-CCCEEEEEECCCCCEEEEeec-cccccceeeecccccccccceeeeEecccCCcceeeee
Confidence            34455544 599999999999988766653 11111101113445555557779999999999887764

...

>KOG1832|consensus

Probab=93.16  E-value=0.28  Score=33.56  Aligned_cols=49  Identities=8%  Similarity=0.282  Sum_probs=40.6

Q ss_pred             eEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCCCceeeEecCcc
Q psy14456         43 FQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRGCTNVLTPIT   91 (93)
Q Consensus        43 ~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~   91 (93)
                      ...+..++...+|+ |+-+.+.++.|+..|.++++++.+|+.......|.
T Consensus      1094 w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~ 1143 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQ 1143 (1516)
T ss_pred             chhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccc
Confidence            44566677888999 99999999999999999999999998766665553

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=93.12  E-value=1.2  Score=26.97  Aligned_cols=65  Identities=14%  Similarity=0.086  Sum_probs=39.4

Q ss_pred             ceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEEEecCCCEEEEecCCCcEEEEeCCCCceeeE
Q psy14456         20 SLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWGGATVLSGSHDRTVRFWDLRTRGCTNV   86 (93)
Q Consensus        20 ~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~   86 (93)
                      ..++..+ .++.+..+|..+|+.+-...-........ ..++..++.++.++.+..+|..+|+.+..
T Consensus        66 ~~v~v~~-~~g~v~a~d~~tG~~~W~~~~~~~~~~~p-~v~~~~v~v~~~~g~l~ald~~tG~~~W~  130 (377)
T TIGR03300        66 GKVYAAD-ADGTVVALDAETGKRLWRVDLDERLSGGV-GADGGLVFVGTEKGEVIALDAEDGKELWR  130 (377)
T ss_pred             CEEEEEC-CCCeEEEEEccCCcEeeeecCCCCcccce-EEcCCEEEEEcCCCEEEEEECCCCcEeee
Confidence            3445544 48899999988887765443222111111 12455666677788888888887766543

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1645|consensus

Probab=92.86  E-value=0.21  Score=30.81  Aligned_cols=48  Identities=17%  Similarity=0.156  Sum_probs=36.8

Q ss_pred             eEEeeccccceEEE-EecCCC-EEEEecCCCcEEEEeCCCCceeeEecCc
Q psy14456         43 FQALSGHSGHVLSL-YNWGGA-TVLSGSHDRTVRFWDLRTRGCTNVLTPI   90 (93)
Q Consensus        43 ~~~~~~~~~~v~~~-~~~~~~-~~~s~~~~~~i~~~d~~~~~~~~~~~~~   90 (93)
                      ..-+..+...|..+ |+|... ++..++.+..|++.|+++..+...+..+
T Consensus       186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~  235 (463)
T KOG1645|consen  186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY  235 (463)
T ss_pred             hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc
Confidence            33344566678899 999666 6778899999999999998777766554

>KOG2066|consensus

Probab=92.69  E-value=1.4  Score=29.68  Aligned_cols=55  Identities=13%  Similarity=0.129  Sum_probs=34.8

Q ss_pred             cceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecC-----CCEEEEecCCCcEEEE
Q psy14456         19 SSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWG-----GATVLSGSHDRTVRFW   76 (93)
Q Consensus        19 ~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~-----~~~~~s~~~~~~i~~~   76 (93)
                      +.++++++ .||.+.+-.+.+......+. -.-++..+ ++|+     ...+++|+..| +.++
T Consensus        83 Gey~asCS-~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~  143 (846)
T KOG2066|consen   83 GEYVASCS-DDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLS  143 (846)
T ss_pred             CceEEEec-CCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEe
Confidence            67777766 69999998877766554443 23345556 6665     34566776666 4444

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=92.05  E-value=1.6  Score=26.10  Aligned_cols=80  Identities=15%  Similarity=0.156  Sum_probs=50.9

Q ss_pred             ceeEEEEEecCCCCcceEEEeeeCCCe-EEEEeCCCCceeEEeeccccc-eEE--EEecCCCEEEEec-----CCCcEEE
Q psy14456          5 TVRDVCFIEDTSNKSSLLISGGAGDCK-IYVTDCATGQAFQALSGHSGH-VLS--LYNWGGATVLSGS-----HDRTVRF   75 (93)
Q Consensus         5 ~v~~~~~~~~~~~~~~~~~~~g~~~~~-v~~~~~~~~~~~~~~~~~~~~-v~~--~~~~~~~~~~s~~-----~~~~i~~   75 (93)
                      +.-.++.+|.    ....++.+-+.|. ..++|..+++....+....+. .+.  +|++++++|++--     ..+.|-+
T Consensus         6 RgH~~a~~p~----~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgV   81 (305)
T PF07433_consen    6 RGHGVAAHPT----RPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGV   81 (305)
T ss_pred             cccceeeCCC----CCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEE
Confidence            3445667775    3444444544444 568899999887766544332 222  2899999988753     3478999


Q ss_pred             EeCC-CCceeeEec
Q psy14456         76 WDLR-TRGCTNVLT   88 (93)
Q Consensus        76 ~d~~-~~~~~~~~~   88 (93)
                      ||.. +...+..|.
T Consensus        82 yd~~~~~~ri~E~~   95 (305)
T PF07433_consen   82 YDAARGYRRIGEFP   95 (305)
T ss_pred             EECcCCcEEEeEec
Confidence            9998 444555554

>KOG1275|consensus

Probab=91.97  E-value=2.5  Score=29.27  Aligned_cols=72  Identities=18%  Similarity=0.183  Sum_probs=52.2

Q ss_pred             cceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEEEecCCCEEEEecCCCcEEEEeCCCCceeeEecCccC
Q psy14456         19 SSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWGGATVLSGSHDRTVRFWDLRTRGCTNVLTPITV   92 (93)
Q Consensus        19 ~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~~   92 (93)
                      .+.++.+|- ...+..+|+++.+......-..+.+.- .-..++.+++|...|+|.+-|.++.+.+.+|..|+.
T Consensus       147 ~~~~i~Gg~-Q~~li~~Dl~~~~e~r~~~v~a~~v~i-mR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~  218 (1118)
T KOG1275|consen  147 PSTLIMGGL-QEKLIHIDLNTEKETRTTNVSASGVTI-MRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSG  218 (1118)
T ss_pred             Ccceeecch-hhheeeeecccceeeeeeeccCCceEE-EEecCcEEEeecccceEEeecCCcCceeeeeecccc
Confidence            456777775 556666688887766554333334433 344678999999999999999999999999988753

>KOG2066|consensus

Probab=91.92  E-value=0.44  Score=31.87  Aligned_cols=56  Identities=25%  Similarity=0.245  Sum_probs=35.2

Q ss_pred             EEEeeeCCCeEEEEeCCCCceeEEeeccccceEEEEecCCCEEEEecCCCcEEEEeCCCCcee
Q psy14456         22 LISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWGGATVLSGSHDRTVRFWDLRTRGCT   84 (93)
Q Consensus        22 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~   84 (93)
                      +++-|..+|.+++++.+-..  .....|...     ..+|.++++|+.||.+.+..+-+....
T Consensus        51 ~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~-----~~~Gey~asCS~DGkv~I~sl~~~~~~  106 (846)
T KOG2066|consen   51 FFALGTHRGAVYLTTCQGNP--KTNFDHSSS-----ILEGEYVASCSDDGKVVIGSLFTDDEI  106 (846)
T ss_pred             eeeeccccceEEEEecCCcc--ccccccccc-----ccCCceEEEecCCCcEEEeeccCCccc
Confidence            34445578888887754332  222223222     347899999999999988877665433

>KOG2444|consensus

Probab=91.76  E-value=1.2  Score=25.52  Aligned_cols=72  Identities=14%  Similarity=0.138  Sum_probs=37.8

Q ss_pred             cceEEEeeeCCCeEEEEeCCCCceeE-EeeccccceEEEEec--CCCEEEEecCCCcEEEEeCCCCceeeEecCcc
Q psy14456         19 SSLLISGGAGDCKIYVTDCATGQAFQ-ALSGHSGHVLSLYNW--GGATVLSGSHDRTVRFWDLRTRGCTNVLTPIT   91 (93)
Q Consensus        19 ~~~~~~~g~~~~~v~~~~~~~~~~~~-~~~~~~~~v~~~~~~--~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~   91 (93)
                      +..++.++ .+|.|.+|..+-..... ....-.+.+.+++..  ++.+.++++.++.++.|++..+..+-....|+
T Consensus        70 ~~~~~vG~-~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~  144 (238)
T KOG2444|consen   70 SAKLMVGT-SDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHN  144 (238)
T ss_pred             CceEEeec-ccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeecccc
Confidence            34455544 59999998866211111 111122233333222  34466677777777777777666555444443

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=91.63  E-value=2.7  Score=27.80  Aligned_cols=57  Identities=12%  Similarity=0.159  Sum_probs=40.7

Q ss_pred             eEEEeeeCCCeEEEEeCCCCceeEEee-ccccceEEE-Ee--cCCCEEEEecCCCcEEEEe
Q psy14456         21 LLISGGAGDCKIYVTDCATGQAFQALS-GHSGHVLSL-YN--WGGATVLSGSHDRTVRFWD   77 (93)
Q Consensus        21 ~~~~~g~~~~~v~~~~~~~~~~~~~~~-~~~~~v~~~-~~--~~~~~~~s~~~~~~i~~~d   77 (93)
                      +++...+....+.|||.+.+.....-. ...+.|.++ |.  ++++.+++.+..+.|.++.
T Consensus        42 k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~  102 (631)
T PF12234_consen   42 KIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYT  102 (631)
T ss_pred             cEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEE
Confidence            344444447788999998887543222 456788888 64  4889999999999988874

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=91.55  E-value=3.4  Score=28.69  Aligned_cols=68  Identities=9%  Similarity=0.103  Sum_probs=45.4

Q ss_pred             cceeEEEEEecCCCCcceEEEeeeCCCeEEEE----eCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEe
Q psy14456          4 GTVRDVCFIEDTSNKSSLLISGGAGDCKIYVT----DCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWD   77 (93)
Q Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~----~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d   77 (93)
                      +.|..+.|.++    ...++.+- .+|.|.+.    +...... ...-.-...|.++ |+||..+++....++++.+.+
T Consensus        76 ~~ivs~~yl~d----~~~l~~~~-~~Gdi~~~~~~~~~~~~~~-E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt  148 (928)
T PF04762_consen   76 DKIVSFQYLAD----SESLCIAL-ASGDIILVREDPDPDEDEI-EIVGSVDSGILAASWSPDEELLALVTGEGNLLLMT  148 (928)
T ss_pred             CcEEEEEeccC----CCcEEEEE-CCceEEEEEccCCCCCcee-EEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEe
Confidence            46778888887    44444443 58888887    4333322 2222345688999 999999998888788777653

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=91.43  E-value=1.9  Score=26.08  Aligned_cols=53  Identities=17%  Similarity=0.161  Sum_probs=36.3

Q ss_pred             CCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCCCce
Q psy14456         29 DCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRGC   83 (93)
Q Consensus        29 ~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~~   83 (93)
                      .+...++|++++........ ...+... |+|+++.++-.. ++.|.+++..++..
T Consensus        22 ~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~   75 (353)
T PF00930_consen   22 KGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQE   75 (353)
T ss_dssp             EEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEE
T ss_pred             ceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCe
Confidence            45678889988765443322 4556667 999999888764 57888888877643

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=91.04  E-value=2.3  Score=25.88  Aligned_cols=72  Identities=17%  Similarity=0.178  Sum_probs=47.0

Q ss_pred             eEEEEEecCCCCcceEEEeeeCCCeEEEEeCCC-Ccee--EEeeccccc----------eEEE-EecCCCEEEEec-CCC
Q psy14456          7 RDVCFIEDTSNKSSLLISGGAGDCKIYVTDCAT-GQAF--QALSGHSGH----------VLSL-YNWGGATVLSGS-HDR   71 (93)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~-~~~~--~~~~~~~~~----------v~~~-~~~~~~~~~s~~-~~~   71 (93)
                      +-++++++    +++++++.-..+.|.++-++. |...  .....|.+.          +... +.|+++++++.+ ..-
T Consensus        92 ~yvsvd~~----g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D  167 (346)
T COG2706          92 CYVSVDED----GRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTD  167 (346)
T ss_pred             eEEEECCC----CCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCc
Confidence            55666666    667776665578899988754 3321  112223333          6666 899999888876 346


Q ss_pred             cEEEEeCCCCc
Q psy14456         72 TVRFWDLRTRG   82 (93)
Q Consensus        72 ~i~~~d~~~~~   82 (93)
                      .+.+|++..|.
T Consensus       168 ri~~y~~~dg~  178 (346)
T COG2706         168 RIFLYDLDDGK  178 (346)
T ss_pred             eEEEEEcccCc
Confidence            78889888654

>KOG2114|consensus

Probab=90.69  E-value=1.6  Score=29.69  Aligned_cols=60  Identities=18%  Similarity=0.328  Sum_probs=35.2

Q ss_pred             ceEEEeeeCCCeEEEEeCCCCceeEEeeccccc-eEEEEec-CCCEEEEecCCC-----cEEEEeCCCC
Q psy14456         20 SLLISGGAGDCKIYVTDCATGQAFQALSGHSGH-VLSLYNW-GGATVLSGSHDR-----TVRFWDLRTR   81 (93)
Q Consensus        20 ~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~-v~~~~~~-~~~~~~s~~~~~-----~i~~~d~~~~   81 (93)
                      ..++. |+.+|.|.+++ +.-+.+..++++... +..++.. +...+++.+.|.     .+++|++++-
T Consensus        36 ~~vvi-gt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~  102 (933)
T KOG2114|consen   36 GSVVI-GTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKV  102 (933)
T ss_pred             ceEEE-eeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEeccccc
Confidence            33343 44588887765 223344667776666 4444443 335677766553     5899998853

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=90.50  E-value=1  Score=25.50  Aligned_cols=28  Identities=14%  Similarity=0.355  Sum_probs=22.8

Q ss_pred             EecCCCEEEEecCCCcEEEEeCCCCcee
Q psy14456         57 YNWGGATVLSGSHDRTVRFWDLRTRGCT   84 (93)
Q Consensus        57 ~~~~~~~~~s~~~~~~i~~~d~~~~~~~   84 (93)
                      +...+.++.....+|.+.+||+.+++..
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~   45 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAV   45 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeec
Confidence            3556788888889999999999987653

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG3621|consensus

Probab=89.70  E-value=2  Score=28.57  Aligned_cols=63  Identities=17%  Similarity=0.196  Sum_probs=41.0

Q ss_pred             cceEEEeeeCCCeEEEEeCCCCceeE-EeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCCCc
Q psy14456         19 SSLLISGGAGDCKIYVTDCATGQAFQ-ALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRG   82 (93)
Q Consensus        19 ~~~~~~~g~~~~~v~~~~~~~~~~~~-~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~   82 (93)
                      .++++.+. ..|.+.+|+-..+..+. ...+..+.+... .++...+++.++..+.|.++.+..+.
T Consensus        45 ~~~l~~Gs-S~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~  109 (726)
T KOG3621|consen   45 EEYLAMGS-SAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKEL  109 (726)
T ss_pred             CceEEEec-ccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccC
Confidence            45555554 59999999876665433 222333333344 67777788888888888888777643

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=89.65  E-value=2.3  Score=26.68  Aligned_cols=45  Identities=11%  Similarity=-0.025  Sum_probs=33.9

Q ss_pred             eeccccceEEE-EecCCCEEEEecCCCcEEEEeCCCCceeeEecCc
Q psy14456         46 LSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRGCTNVLTPI   90 (93)
Q Consensus        46 ~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~   90 (93)
                      +....-.+..+ .+|.+++.+....-|.|.++|+.++..++++.+-
T Consensus       303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGY  348 (415)
T PF14655_consen  303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGY  348 (415)
T ss_pred             eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccC
Confidence            33334456677 8999888887777799999999999888777653

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=89.19  E-value=3.8  Score=25.50  Aligned_cols=73  Identities=23%  Similarity=0.224  Sum_probs=33.5

Q ss_pred             EEEecCCCCcceEEEeeeCCCeEEEE--eCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCCCceeeE
Q psy14456         10 CFIEDTSNKSSLLISGGAGDCKIYVT--DCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRGCTNV   86 (93)
Q Consensus        10 ~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~   86 (93)
                      +|.++    +++++-.+..++.-.+|  |+.+++..+.-.+-....... .+++...++-...+..+.-.|+++.+....
T Consensus        42 ~ft~d----G~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~v  117 (386)
T PF14583_consen   42 CFTDD----GRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVV  117 (386)
T ss_dssp             -B-TT----S-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEE
T ss_pred             CcCCC----CCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEE
Confidence            45555    44444444456665544  566666544322221211223 577777766555567888889888765433

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=88.94  E-value=0.89  Score=17.95  Aligned_cols=30  Identities=20%  Similarity=0.240  Sum_probs=20.4

Q ss_pred             CCCEEE-EecCCCcEEEEeCCCCceeeEecC
Q psy14456         60 GGATVL-SGSHDRTVRFWDLRTRGCTNVLTP   89 (93)
Q Consensus        60 ~~~~~~-s~~~~~~i~~~d~~~~~~~~~~~~   89 (93)
                      +++.+. +...++.+.++|..++..+..+..
T Consensus         2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~v   32 (42)
T TIGR02276         2 DGTKLYVTNSGSNTVSVIDTATNKVIATIPV   32 (42)
T ss_pred             CCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence            445444 444678889999988877766654

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG2395|consensus

Probab=88.92  E-value=3  Score=27.16  Aligned_cols=57  Identities=18%  Similarity=0.205  Sum_probs=38.4

Q ss_pred             ceEEEeeeCCCeEEEEeCCCCce-eEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCC
Q psy14456         20 SLLISGGAGDCKIYVTDCATGQA-FQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLR   79 (93)
Q Consensus        20 ~~~~~~g~~~~~v~~~~~~~~~~-~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~   79 (93)
                      ..++.+ +.+|.|++||- .+.. ...+.+-..+|..+ ...+|.+++.-+ +..+.+.+..
T Consensus       442 G~Ivvg-S~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~  500 (644)
T KOG2395|consen  442 GYIVVG-SLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL  500 (644)
T ss_pred             ceEEEe-ecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence            345554 47999999996 5544 34556777888888 888888776433 5566666543

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=88.61  E-value=6.5  Score=27.44  Aligned_cols=59  Identities=14%  Similarity=0.086  Sum_probs=36.9

Q ss_pred             ceeEEEEEecCCCCcceEEEeee--C---CCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEec
Q psy14456          5 TVRDVCFIEDTSNKSSLLISGGA--G---DCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGS   68 (93)
Q Consensus         5 ~v~~~~~~~~~~~~~~~~~~~g~--~---~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~   68 (93)
                      .-..++|..|    +.+++.+.-  .   ...+++|+-+ |........-.+--..+ |.|.|+++++..
T Consensus       211 ~~~~ISWRGD----G~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q  275 (928)
T PF04762_consen  211 GRVRISWRGD----GEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQ  275 (928)
T ss_pred             CceEEEECCC----CcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEE
Confidence            3456789888    788776653  2   2578899844 54333333222223456 899999998664

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=88.52  E-value=3.2  Score=27.94  Aligned_cols=34  Identities=15%  Similarity=0.194  Sum_probs=26.1

Q ss_pred             cceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCC
Q psy14456          4 GTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCAT   39 (93)
Q Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~   39 (93)
                      ..|..+.|+|.+.++..+++-. + |+.+|+||+..
T Consensus       147 ~~i~qv~WhP~s~~~~~l~vLt-s-dn~lR~y~~~~  180 (717)
T PF10168_consen  147 LEIKQVRWHPWSESDSHLVVLT-S-DNTLRLYDISD  180 (717)
T ss_pred             ceEEEEEEcCCCCCCCeEEEEe-c-CCEEEEEecCC
Confidence            4688999999865555665554 3 99999999864

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG4499|consensus

Probab=87.93  E-value=3.8  Score=24.00  Aligned_cols=78  Identities=14%  Similarity=0.108  Sum_probs=48.7

Q ss_pred             eEEEEEecCCCCcceEEEeeeCCCeEEEEe--CCCCc-----eeEEeec---cccceE-EE-EecCCCEEEEecCCCcEE
Q psy14456          7 RDVCFIEDTSNKSSLLISGGAGDCKIYVTD--CATGQ-----AFQALSG---HSGHVL-SL-YNWGGATVLSGSHDRTVR   74 (93)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~~-----~~~~~~~---~~~~v~-~~-~~~~~~~~~s~~~~~~i~   74 (93)
                      +.++|+-+    .+.+.-..+.+..|..||  ..+|.     .+..+..   ...... .+ ..-+|.+.++.-..+++.
T Consensus       161 Ngl~Wd~d----~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~  236 (310)
T KOG4499|consen  161 NGLAWDSD----AKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQ  236 (310)
T ss_pred             cccccccc----CcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEE
Confidence            34667655    566666666688887787  55553     2222221   111111 22 344677778887888999


Q ss_pred             EEeCCCCceeeEec
Q psy14456         75 FWDLRTRGCTNVLT   88 (93)
Q Consensus        75 ~~d~~~~~~~~~~~   88 (93)
                      ..|..+|+.++.+.
T Consensus       237 ~~dp~tGK~L~eik  250 (310)
T KOG4499|consen  237 KVDPTTGKILLEIK  250 (310)
T ss_pred             EECCCCCcEEEEEE
Confidence            99999998887764

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=87.37  E-value=5  Score=25.27  Aligned_cols=73  Identities=14%  Similarity=0.120  Sum_probs=41.2

Q ss_pred             EEEEEecCCCCcceEEEeeeCCCeEEEEeCC--CCce-eEEeeccccceEEE-EecCCCEEEEecC-CCc--EEEEeCCC
Q psy14456          8 DVCFIEDTSNKSSLLISGGAGDCKIYVTDCA--TGQA-FQALSGHSGHVLSL-YNWGGATVLSGSH-DRT--VRFWDLRT   80 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~--~~~~-~~~~~~~~~~v~~~-~~~~~~~~~s~~~-~~~--i~~~d~~~   80 (93)
                      .-.|+|+    ++.++-..++.|.-.+|-.+  .... ..+.......  .- ++|++.+++..+. ++.  +.+.|+.+
T Consensus       286 ~Ps~spd----G~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~--~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~  359 (425)
T COG0823         286 SPSWSPD----GSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNS--NPVWSPDGDKIVFESSSGGQWDIDKNDLAS  359 (425)
T ss_pred             CccCCCC----CCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCc--CccCCCCCCEEEEEeccCCceeeEEeccCC
Confidence            3467888    56655555578887777554  3332 2222222222  34 8999998875553 343  66677766


Q ss_pred             CceeeE
Q psy14456         81 RGCTNV   86 (93)
Q Consensus        81 ~~~~~~   86 (93)
                      +...+.
T Consensus       360 ~~~~~~  365 (425)
T COG0823         360 GGKIRI  365 (425)
T ss_pred             CCcEEE
Confidence            553333

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=86.98  E-value=4  Score=23.18  Aligned_cols=64  Identities=16%  Similarity=0.134  Sum_probs=40.8

Q ss_pred             cceEEEeeeCCCeEEEEeCCCCceeEEe-------e-------ccccceEEE-EecCCCEEEEecCCCcEEEEeCCCCce
Q psy14456         19 SSLLISGGAGDCKIYVTDCATGQAFQAL-------S-------GHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRGC   83 (93)
Q Consensus        19 ~~~~~~~g~~~~~v~~~~~~~~~~~~~~-------~-------~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~~   83 (93)
                      ++++++.. .+|.+.+||+..++++..-       .       .....|..+ ...+|..+++-+ ++....|+..-+..
T Consensus        22 ~~~Ll~iT-~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L~~W   99 (219)
T PF07569_consen   22 GSYLLAIT-SSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDLGCW   99 (219)
T ss_pred             CCEEEEEe-CCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccccee
Confidence            56666665 5999999999887553211       1       233456666 777787777654 46667776654433


Q ss_pred             e
Q psy14456         84 T   84 (93)
Q Consensus        84 ~   84 (93)
                      +
T Consensus       100 ~  100 (219)
T PF07569_consen  100 I  100 (219)
T ss_pred             E
Confidence            3

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=86.97  E-value=5.3  Score=24.60  Aligned_cols=71  Identities=18%  Similarity=0.111  Sum_probs=41.7

Q ss_pred             eeEEEEEecCCCCcceEEEee----eCCCeEEEEeCCCCceeEE-eeccccceEEE-EecCCCEEEEecCC---------
Q psy14456          6 VRDVCFIEDTSNKSSLLISGG----AGDCKIYVTDCATGQAFQA-LSGHSGHVLSL-YNWGGATVLSGSHD---------   70 (93)
Q Consensus         6 v~~~~~~~~~~~~~~~~~~~g----~~~~~v~~~~~~~~~~~~~-~~~~~~~v~~~-~~~~~~~~~s~~~~---------   70 (93)
                      +....++|+    +++++-+-    ++...++++|+++++.+.. +.....  ..+ |.+++..++....+         
T Consensus       126 ~~~~~~Spd----g~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~--~~~~W~~d~~~~~y~~~~~~~~~~~~~  199 (414)
T PF02897_consen  126 LGGFSVSPD----GKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKF--SSVSWSDDGKGFFYTRFDEDQRTSDSG  199 (414)
T ss_dssp             EEEEEETTT----SSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEES--EEEEECTTSSEEEEEECSTTTSS-CCG
T ss_pred             eeeeeECCC----CCEEEEEecCCCCceEEEEEEECCCCcCcCCccccccc--ceEEEeCCCCEEEEEEeCcccccccCC
Confidence            345677888    66665433    3334599999999976543 222111  237 89887776544322         


Q ss_pred             --CcEEEEeCCCCc
Q psy14456         71 --RTVRFWDLRTRG   82 (93)
Q Consensus        71 --~~i~~~d~~~~~   82 (93)
                        ..+..|.+.+..
T Consensus       200 ~~~~v~~~~~gt~~  213 (414)
T PF02897_consen  200 YPRQVYRHKLGTPQ  213 (414)
T ss_dssp             CCEEEEEEETTS-G
T ss_pred             CCcEEEEEECCCCh
Confidence              236777777654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>smart00564 PQQ beta-propeller repeat

Probab=86.14  E-value=1.2  Score=16.54  Aligned_cols=25  Identities=32%  Similarity=0.235  Sum_probs=19.4

Q ss_pred             EEEEecCCCcEEEEeCCCCceeeEe
Q psy14456         63 TVLSGSHDRTVRFWDLRTRGCTNVL   87 (93)
Q Consensus        63 ~~~s~~~~~~i~~~d~~~~~~~~~~   87 (93)
                      .++.++.++.+..+|.++|+..-.+
T Consensus         8 ~v~~~~~~g~l~a~d~~~G~~~W~~   32 (33)
T smart00564        8 TVYVGSTDGTLYALDAKTGEILWTY   32 (33)
T ss_pred             EEEEEcCCCEEEEEEcccCcEEEEc
Confidence            5667778899999999888776543

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=85.74  E-value=3.6  Score=24.91  Aligned_cols=60  Identities=18%  Similarity=0.175  Sum_probs=36.5

Q ss_pred             cceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeE-Eeec------------c----ccceEEE-EecCCCEEE
Q psy14456          4 GTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQ-ALSG------------H----SGHVLSL-YNWGGATVL   65 (93)
Q Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~-~~~~------------~----~~~v~~~-~~~~~~~~~   65 (93)
                      ..+....|+|+    ++.++-.  +++.|.+++..++...+ +..+            .    -+.-..+ |+|+++.++
T Consensus        43 ~~~~~~~~sP~----g~~~~~v--~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la  116 (353)
T PF00930_consen   43 PKLQDAKWSPD----GKYIAFV--RDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLA  116 (353)
T ss_dssp             TTBSEEEE-SS----STEEEEE--ETTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEE
T ss_pred             cccccceeecC----CCeeEEE--ecCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEE
Confidence            35677899999    6777665  48899999877664332 1112            0    1122467 999999888


Q ss_pred             EecC
Q psy14456         66 SGSH   69 (93)
Q Consensus        66 s~~~   69 (93)
                      ....
T Consensus       117 ~~~~  120 (353)
T PF00930_consen  117 FLRF  120 (353)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6653

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=85.30  E-value=6.6  Score=24.11  Aligned_cols=59  Identities=8%  Similarity=0.071  Sum_probs=32.8

Q ss_pred             CCCeEEEEeCCCCceeEEeeccccce-EEEEecCCCEEEEecCCCcEEEEeCCCCceeeEe
Q psy14456         28 GDCKIYVTDCATGQAFQALSGHSGHV-LSLYNWGGATVLSGSHDRTVRFWDLRTRGCTNVL   87 (93)
Q Consensus        28 ~~~~v~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~   87 (93)
                      .++.+..+|..+++.+-....-.... ....- .+..++.++.++.+.+.|..+|+.+...
T Consensus       302 ~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v-~~g~l~v~~~~G~l~~ld~~tG~~~~~~  361 (394)
T PRK11138        302 QNDRVYALDTRGGVELWSQSDLLHRLLTAPVL-YNGYLVVGDSEGYLHWINREDGRFVAQQ  361 (394)
T ss_pred             CCCeEEEEECCCCcEEEcccccCCCcccCCEE-ECCEEEEEeCCCEEEEEECCCCCEEEEE
Confidence            36666666666665433221100111 11101 2455667788899999999998876554

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=85.01  E-value=6.4  Score=23.73  Aligned_cols=72  Identities=17%  Similarity=0.270  Sum_probs=43.2

Q ss_pred             cceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEee--ccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          4 GTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALS--GHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~--~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      +.|.++.|+|+    .+.+++..+ ....-++-...|..+.++.  +-.+ .-.+ +..++++.++--.++.+.++.+..
T Consensus        86 ~nvS~LTynp~----~rtLFav~n-~p~~iVElt~~GdlirtiPL~g~~D-pE~Ieyig~n~fvi~dER~~~l~~~~vd~  159 (316)
T COG3204          86 ANVSSLTYNPD----TRTLFAVTN-KPAAIVELTKEGDLIRTIPLTGFSD-PETIEYIGGNQFVIVDERDRALYLFTVDA  159 (316)
T ss_pred             ccccceeeCCC----cceEEEecC-CCceEEEEecCCceEEEecccccCC-hhHeEEecCCEEEEEehhcceEEEEEEcC
Confidence            34889999999    677777775 5555566556677766553  2111 1233 444555555555566666665554


Q ss_pred             C
Q psy14456         81 R   81 (93)
Q Consensus        81 ~   81 (93)
                      .
T Consensus       160 ~  160 (316)
T COG3204         160 D  160 (316)
T ss_pred             C
Confidence            4

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=83.89  E-value=6.9  Score=23.25  Aligned_cols=55  Identities=16%  Similarity=0.229  Sum_probs=36.8

Q ss_pred             CCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEec------CCCcEEEEeCCCCc
Q psy14456         28 GDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGS------HDRTVRFWDLRTRG   82 (93)
Q Consensus        28 ~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~------~~~~i~~~d~~~~~   82 (93)
                      ....+++||....+-..--.+-.+.|..+ |..+.++++.|.      ....+..||..+..
T Consensus        14 ~C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~   75 (281)
T PF12768_consen   14 PCPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT   75 (281)
T ss_pred             CCCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe
Confidence            47789999987665433333456788888 876667777664      34567778876553

>PRK02888 nitrous-oxide reductase; Validated

Probab=83.87  E-value=10  Score=25.30  Aligned_cols=53  Identities=17%  Similarity=0.155  Sum_probs=35.8

Q ss_pred             CCeEEEEeCCC----C-ceeEEeeccccceEEE-EecCCCEEEEe-cCCCcEEEEeCCCCc
Q psy14456         29 DCKIYVTDCAT----G-QAFQALSGHSGHVLSL-YNWGGATVLSG-SHDRTVRFWDLRTRG   82 (93)
Q Consensus        29 ~~~v~~~~~~~----~-~~~~~~~~~~~~v~~~-~~~~~~~~~s~-~~~~~i~~~d~~~~~   82 (93)
                      ++.|.+.|..+    + ..+..+. -......+ ++|++.+++.. ..+..+.+.|+.+..
T Consensus       295 gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k  354 (635)
T PRK02888        295 GSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLD  354 (635)
T ss_pred             CCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhh
Confidence            46788888877    3 3334333 22333566 89999987655 478999999998754

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=83.31  E-value=7.7  Score=23.34  Aligned_cols=77  Identities=13%  Similarity=0.134  Sum_probs=44.9

Q ss_pred             eEEEEEecCCCCcceEEEeeeCCCeEEEEeCCC--C----ce-eEEeeccccceEEE-EecCCCEEEEecCC-CcEEEEe
Q psy14456          7 RDVCFIEDTSNKSSLLISGGAGDCKIYVTDCAT--G----QA-FQALSGHSGHVLSL-YNWGGATVLSGSHD-RTVRFWD   77 (93)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~--~----~~-~~~~~~~~~~v~~~-~~~~~~~~~s~~~~-~~i~~~d   77 (93)
                      +.++|+|+    ++.++.+-+..+.+.-++...  +    +. ...+....+..=.+ ...++.+.+++-.+ +.+..|+
T Consensus       166 NGla~SpD----g~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~  241 (307)
T COG3386         166 NGLAFSPD----GKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFN  241 (307)
T ss_pred             CceEECCC----CCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEEC
Confidence            57899999    666666666678888777652  1    11 11111112222233 56677777544444 3888898


Q ss_pred             CCCCceeeEec
Q psy14456         78 LRTRGCTNVLT   88 (93)
Q Consensus        78 ~~~~~~~~~~~   88 (93)
                      .. +..+..+.
T Consensus       242 pd-G~l~~~i~  251 (307)
T COG3386         242 PD-GKLLGEIK  251 (307)
T ss_pred             CC-CcEEEEEE
Confidence            87 66665554

>KOG1008|consensus

Probab=83.16  E-value=0.56  Score=30.84  Aligned_cols=74  Identities=16%  Similarity=0.277  Sum_probs=47.1

Q ss_pred             ceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCC--ceeEEeeccccceEEE-Eec-CCCEEEEec----CCCcEEEE
Q psy14456          5 TVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATG--QAFQALSGHSGHVLSL-YNW-GGATVLSGS----HDRTVRFW   76 (93)
Q Consensus         5 ~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~--~~~~~~~~~~~~v~~~-~~~-~~~~~~s~~----~~~~i~~~   76 (93)
                      .+.|+++.-+.   .+-+++.|..+|.|.+-..+..  +......++....+++ |++ |.+.++.|-    .|..+.+|
T Consensus        58 y~kcva~~y~~---d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iw  134 (783)
T KOG1008|consen   58 YVKCVASFYGN---DRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIW  134 (783)
T ss_pred             CceeehhhcCC---chhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccce
Confidence            45566665442   2356666766899988776533  2223334566777888 877 556666552    35689999


Q ss_pred             eCCCC
Q psy14456         77 DLRTR   81 (93)
Q Consensus        77 d~~~~   81 (93)
                      |+.++
T Consensus       135 di~s~  139 (783)
T KOG1008|consen  135 DINSL  139 (783)
T ss_pred             ecccc
Confidence            99876

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=82.34  E-value=10  Score=24.18  Aligned_cols=66  Identities=15%  Similarity=0.144  Sum_probs=41.5

Q ss_pred             EEEeeeCCCeEEEEeCCCCceeEEeecccc------ceEEE-EecCC-CEEEEecCCCcEEEEeCCCCceeeEec
Q psy14456         22 LISGGAGDCKIYVTDCATGQAFQALSGHSG------HVLSL-YNWGG-ATVLSGSHDRTVRFWDLRTRGCTNVLT   88 (93)
Q Consensus        22 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~------~v~~~-~~~~~-~~~~s~~~~~~i~~~d~~~~~~~~~~~   88 (93)
                      ++... .++.+...|.++++.+-.......      .+... ....+ ..++.++.++.+..+|.++|+.+-.+.
T Consensus        64 vy~~~-~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~  137 (488)
T cd00216          64 MYFTT-SHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFG  137 (488)
T ss_pred             EEEeC-CCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEeeeec
Confidence            34433 478999999998877655432211      11111 11123 567777789999999999998776554

The alignment model contains an 8-bladed beta-propeller.

>PF01011 PQQ: PQQ enzyme repeat family

Probab=82.34  E-value=2.3  Score=16.69  Aligned_cols=26  Identities=19%  Similarity=0.134  Sum_probs=20.8

Q ss_pred             EEEecCCCcEEEEeCCCCceeeEecC
Q psy14456         64 VLSGSHDRTVRFWDLRTRGCTNVLTP   89 (93)
Q Consensus        64 ~~s~~~~~~i~~~d~~~~~~~~~~~~   89 (93)
                      +..+..++.+...|.++|+.+-.+..
T Consensus         3 v~~~~~~g~l~AlD~~TG~~~W~~~~   28 (38)
T PF01011_consen    3 VYVGTPDGYLYALDAKTGKVLWKFQT   28 (38)
T ss_dssp             EEEETTTSEEEEEETTTTSEEEEEES
T ss_pred             EEEeCCCCEEEEEECCCCCEEEeeeC
Confidence            45558899999999999988777654

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>KOG1008|consensus

Probab=82.02  E-value=1  Score=29.76  Aligned_cols=71  Identities=15%  Similarity=0.193  Sum_probs=41.1

Q ss_pred             cceeEEEEEecCCCCcceEEEeeeCCCeEEEEeC-C-CCceeEEeecccc----ceEEE-Eec-CCCEEEEec-CCCcEE
Q psy14456          4 GTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDC-A-TGQAFQALSGHSG----HVLSL-YNW-GGATVLSGS-HDRTVR   74 (93)
Q Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~-~~~~~~~~~~~~~----~v~~~-~~~-~~~~~~s~~-~~~~i~   74 (93)
                      ..+..+...|-.   ..+ +++.+ |+.+.+||. . ....+..+...++    .+..+ |.| ...++++.. ..++|+
T Consensus       196 k~vqG~tVdp~~---~nY-~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIr  270 (783)
T KOG1008|consen  196 KYVQGITVDPFS---PNY-FCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIR  270 (783)
T ss_pred             hhcccceecCCC---CCc-eeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEE
Confidence            445566666642   334 44454 999999993 2 2233343433333    36777 888 334455554 446888


Q ss_pred             EEeCC
Q psy14456         75 FWDLR   79 (93)
Q Consensus        75 ~~d~~   79 (93)
                      ++|+.
T Consensus       271 lydi~  275 (783)
T KOG1008|consen  271 LYDIC  275 (783)
T ss_pred             Eeccc
Confidence            88876

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=81.95  E-value=9.5  Score=23.43  Aligned_cols=56  Identities=18%  Similarity=0.111  Sum_probs=35.0

Q ss_pred             eEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeC
Q psy14456         21 LLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDL   78 (93)
Q Consensus        21 ~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~   78 (93)
                      .++... .+|.+...|..+++.+....-....+..- .- .+..++.++.|+.+..++.
T Consensus       337 ~l~v~~-~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~-~~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        337 YLVVGD-SEGYLHWINREDGRFVAQQKVDSSGFLSEPVV-ADDKLLIQARDGTVYAITR  393 (394)
T ss_pred             EEEEEe-CCCEEEEEECCCCCEEEEEEcCCCcceeCCEE-ECCEEEEEeCCceEEEEeC
Confidence            444444 58999999999998776654322223322 22 2346777788888877654

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=81.43  E-value=8.4  Score=22.45  Aligned_cols=70  Identities=17%  Similarity=0.281  Sum_probs=43.3

Q ss_pred             ceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeecc-ccceEEE-EecCCCEEEEecCCCcEEEEeCC
Q psy14456          5 TVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGH-SGHVLSL-YNWGGATVLSGSHDRTVRFWDLR   79 (93)
Q Consensus         5 ~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~-~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~   79 (93)
                      .+..++|.|+    ...+++..+..+.|..++. .|+.+..+.-. .+-.-.+ +..++.++++.-.++.+.++++.
T Consensus        23 e~SGLTy~pd----~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~   94 (248)
T PF06977_consen   23 ELSGLTYNPD----TGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID   94 (248)
T ss_dssp             -EEEEEEETT----TTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred             CccccEEcCC----CCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence            4899999998    5666666667888888886 46666655321 2334455 55556566555567888888773

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=80.80  E-value=3.2  Score=27.34  Aligned_cols=32  Identities=25%  Similarity=0.548  Sum_probs=25.1

Q ss_pred             ccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCC
Q psy14456          3 DGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCA   38 (93)
Q Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~   38 (93)
                      ++.|.|-+|.++|   .+++++.|+ .-.-.+||-.
T Consensus       155 ~G~IhCACWT~DG---~RLVVAvGS-sLHSyiWd~~  186 (671)
T PF15390_consen  155 SGLIHCACWTKDG---QRLVVAVGS-SLHSYIWDSA  186 (671)
T ss_pred             CceEEEEEecCcC---CEEEEEeCC-eEEEEEecCc
Confidence            4679999999996   667778885 7777899854

>KOG1920|consensus

Probab=80.24  E-value=14  Score=26.74  Aligned_cols=71  Identities=14%  Similarity=0.205  Sum_probs=43.8

Q ss_pred             eEEEEEecCCCCcceEEEeee--CCCeEEEEeCCC---CceeEEeeccccceEEE-EecCCCEEEE---ecCCCcEEEEe
Q psy14456          7 RDVCFIEDTSNKSSLLISGGA--GDCKIYVTDCAT---GQAFQALSGHSGHVLSL-YNWGGATVLS---GSHDRTVRFWD   77 (93)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~g~--~~~~v~~~~~~~---~~~~~~~~~~~~~v~~~-~~~~~~~~~s---~~~~~~i~~~d   77 (93)
                      .+++|-|.    +.++++...  .+..|.++.-+-   ++-...+.....++..+ |+.++..++.   ......+.+|-
T Consensus       245 ~~LsWkPs----gs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt  320 (1265)
T KOG1920|consen  245 HSLSWKPS----GSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWT  320 (1265)
T ss_pred             cceeecCC----CCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEE
Confidence            47889997    778877662  255677766431   22222233333347788 9998888776   44455699997


Q ss_pred             CCCC
Q psy14456         78 LRTR   81 (93)
Q Consensus        78 ~~~~   81 (93)
                      ..+.
T Consensus       321 ~~Ny  324 (1265)
T KOG1920|consen  321 TGNY  324 (1265)
T ss_pred             ecCe
Confidence            6654

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=80.20  E-value=10  Score=22.60  Aligned_cols=68  Identities=19%  Similarity=0.258  Sum_probs=39.9

Q ss_pred             ccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCc-eeEEee-ccccceEEEEecCCCEEEEecCCCcEEEEeCC
Q psy14456          3 DGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQ-AFQALS-GHSGHVLSLYNWGGATVLSGSHDRTVRFWDLR   79 (93)
Q Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~-~~~~~~-~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~   79 (93)
                      .++|++++--.     +. ++++.  +..+.+|++...+ ...... .....+.++ ...++.++.+..-..+.++.++
T Consensus        88 ~g~V~ai~~~~-----~~-lv~~~--g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl-~~~~~~I~vgD~~~sv~~~~~~  157 (321)
T PF03178_consen   88 KGPVTAICSFN-----GR-LVVAV--GNKLYVYDLDNSKTLLKKAFYDSPFYITSL-SVFKNYILVGDAMKSVSLLRYD  157 (321)
T ss_dssp             SS-EEEEEEET-----TE-EEEEE--TTEEEEEEEETTSSEEEEEEE-BSSSEEEE-EEETTEEEEEESSSSEEEEEEE
T ss_pred             cCcceEhhhhC-----CE-EEEee--cCEEEEEEccCcccchhhheecceEEEEEE-eccccEEEEEEcccCEEEEEEE
Confidence            46778877652     33 44432  6899999987776 433222 222345555 3346688888877777766444

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	93
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		1e-07
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		1e-06
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		1e-06
2gnq_A	336	Structure Of Wdr5 Length = 336		4e-06
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		4e-06
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		5e-06
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		5e-06
2h9l_A	329	Wdr5delta23 Length = 329		5e-06
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		5e-06
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		5e-06
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		5e-06
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		5e-06
2g99_A	308	Structural Basis For The Specific Recognition Of Me		5e-06
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		5e-06
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		5e-06
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		5e-06
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		5e-06
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		6e-06
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		7e-06
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		7e-06
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		3e-05
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		5e-05
3mmy_A	368	Structural And Functional Analysis Of The Interacti		2e-04
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		8e-04

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
Query: 3   DGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGG 61
           D  +R VCF  D        ++ GA D  I + D    +    L GH   + SL Y   G
Sbjct: 123 DLYIRSVCFSPDGK-----FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSG 177
Query: 62  ATVLSGSHDRTVRFWDLRTRGCTNVLT 88
             ++SGS DRTVR WDLRT  C+  L+
Sbjct: 178 DKLVSGSGDRTVRIWDLRTGQCSLTLS 204

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 34/62 (54%)
Query: 26  GAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWGGATVLSGSHDRTVRFWDLRTRGCTN 85
           GA D  I V D    +    LSGH G V +L    G  ++SGS DRTVR WD++   CT+
Sbjct: 138 GADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTH 197
Query: 86  VL 87
           V 
Sbjct: 198 VF 199

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 34/62 (54%)
Query: 26  GAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWGGATVLSGSHDRTVRFWDLRTRGCTN 85
           GA D  I V D    +    LSGH G V +L    G  ++SGS DRTVR WD++   CT+
Sbjct: 138 GADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTH 197
Query: 86  VL 87
           V 
Sbjct: 198 VF 199

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 2   HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWG 60
           H   + DV +  D    S+LL+S  + D  + + D ++G+  + L GHS +V    +N  
Sbjct: 88  HKLGISDVAWSSD----SNLLVSA-SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 142
Query: 61  GATVLSGSHDRTVRFWDLRTRGCTNVLTPITVP 93
              ++SGS D +VR WD++T  C   L   + P
Sbjct: 143 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 175

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 2   HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWG 60
           H   + DV +  D    S+LL+S  + D  + + D ++G+  + L GHS +V    +N  
Sbjct: 69  HKLGISDVAWSSD----SNLLVSA-SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 123
Query: 61  GATVLSGSHDRTVRFWDLRTRGCTNVLTPITVP 93
              ++SGS D +VR WD++T  C   L   + P
Sbjct: 124 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 156

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 2   HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWG 60
           H   + DV +  D    S+LL+S  + D  + + D ++G+  + L GHS +V    +N  
Sbjct: 64  HKLGISDVAWSSD----SNLLVSA-SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 118
Query: 61  GATVLSGSHDRTVRFWDLRTRGCTNVLTPITVP 93
              ++SGS D +VR WD++T  C   L   + P
Sbjct: 119 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 151

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 2   HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWG 60
           H   + DV +  D    S+LL+S  + D  + + D ++G+  + L GHS +V    +N  
Sbjct: 70  HKLGISDVAWSSD----SNLLVSA-SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 124
Query: 61  GATVLSGSHDRTVRFWDLRTRGCTNVLTPITVP 93
              ++SGS D +VR WD++T  C   L   + P
Sbjct: 125 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 157

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 2   HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWG 60
           H   + DV +  D    S+LL+S  + D  + + D ++G+  + L GHS +V    +N  
Sbjct: 81  HKLGISDVAWSSD----SNLLVSA-SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 135
Query: 61  GATVLSGSHDRTVRFWDLRTRGCTNVLTPITVP 93
              ++SGS D +VR WD++T  C   L   + P
Sbjct: 136 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 168

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 2   HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWG 60
           H   + DV +  D    S+LL+S  + D  + + D ++G+  + L GHS +V    +N  
Sbjct: 70  HKLGISDVAWSSD----SNLLVSA-SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 124
Query: 61  GATVLSGSHDRTVRFWDLRTRGCTNVLTPITVP 93
              ++SGS D +VR WD++T  C   L   + P
Sbjct: 125 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 157

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 2   HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWG 60
           H   + DV +  D    S+LL+S  + D  + + D ++G+  + L GHS +V    +N  
Sbjct: 65  HKLGISDVAWSSD----SNLLVSA-SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 119
Query: 61  GATVLSGSHDRTVRFWDLRTRGCTNVLTPITVP 93
              ++SGS D +VR WD++T  C   L   + P
Sbjct: 120 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 152

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 2   HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWG 60
           H   + DV +  D    S+LL+S  + D  + + D ++G+  + L GHS +V    +N  
Sbjct: 70  HKLGISDVAWSSD----SNLLVSA-SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 124
Query: 61  GATVLSGSHDRTVRFWDLRTRGCTNVLTPITVP 93
              ++SGS D +VR WD++T  C   L   + P
Sbjct: 125 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 157

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 2   HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWG 60
           H   + DV +  D    S+LL+S  + D  + + D ++G+  + L GHS +V    +N  
Sbjct: 64  HKLGISDVAWSSD----SNLLVSA-SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 118
Query: 61  GATVLSGSHDRTVRFWDLRTRGCTNVLTPITVP 93
              ++SGS D +VR WD++T  C   L   + P
Sbjct: 119 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 151

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 2   HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWG 60
           H   + DV +  D    S+LL+S  + D  + + D ++G+  + L GHS +V    +N  
Sbjct: 60  HKLGISDVAWSSD----SNLLVSA-SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 114
Query: 61  GATVLSGSHDRTVRFWDLRTRGCTNVLTPITVP 93
              ++SGS D +VR WD++T  C   L   + P
Sbjct: 115 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 147

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 2   HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWG 60
           H   + DV +  D    S+LL+S  + D  + + D ++G+  + L GHS +V    +N  
Sbjct: 67  HKLGISDVAWSSD----SNLLVSA-SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 121
Query: 61  GATVLSGSHDRTVRFWDLRTRGCTNVLTPITVP 93
              ++SGS D +VR WD++T  C   L   + P
Sbjct: 122 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 154

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 2   HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWG 60
           H   + DV +  D    S+LL+S  + D  + + D ++G+  + L GHS +V    +N  
Sbjct: 63  HKLGISDVAWSSD----SNLLVSA-SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 117
Query: 61  GATVLSGSHDRTVRFWDLRTRGCTNVLTPITVP 93
              ++SGS D +VR WD++T  C   L   + P
Sbjct: 118 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 150

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 2   HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWG 60
           H   + DV +  D    S+LL+S  + D  + + D ++G+  + L GHS +V    +N  
Sbjct: 67  HKLGISDVAWSSD----SNLLVSA-SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 121
Query: 61  GATVLSGSHDRTVRFWDLRTRGCTNVLTPITVP 93
              ++SGS D +VR WD++T  C   L   + P
Sbjct: 122 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 154

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 2   HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWG 60
           H   + DV +  D    S+LL+S  + D  + + D ++G+  + L GHS +V    +N  
Sbjct: 67  HKLGISDVAWSSD----SNLLVSA-SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 121
Query: 61  GATVLSGSHDRTVRFWDLRTRGCTNVLTPITVP 93
              ++SGS D +VR WD++T  C   L   + P
Sbjct: 122 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 154

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 16  SNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVR 74
           S+ S+LL+S  + D  + + D ++G+  + L GHS +V    +N     ++SGS D +VR
Sbjct: 96  SSDSNLLVSA-SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 154
Query: 75  FWDLRTRGCTNVLTPITVP 93
            WD++T  C   L   + P
Sbjct: 155 IWDVKTGKCLKTLPAHSDP 173

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 2   HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWG 60
           H   + DV +  D    S+LL+S  + D  + + D ++G+  + L GHS +V    +N  
Sbjct: 67  HKLGISDVAWSSD----SNLLVSA-SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 121
Query: 61  GATVLSGSHDRTVRFWDLRTRGCTNVLTPITVP 93
              ++SGS D +VR WD++T  C   L   + P
Sbjct: 122 SNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDP 154

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 2   HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWG 60
           H   + DV +  D    S+LL+S  + D  + + D ++G+  + L GHS +V    +N  
Sbjct: 67  HKLGISDVAWSSD----SNLLVSA-SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 121
Query: 61  GATVLSGSHDRTVRFWDLRTRGCTNVLTPITVP 93
              ++SGS D +VR WD++T  C   L   + P
Sbjct: 122 SNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDP 154

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 16  SNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLS-LYNWGGATVLSGSHDRTVR 74
           S K    +  G+ D  I + D +TG     L GH   V   L++ GG  +LS + D+T+R
Sbjct: 304 SGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLR 363
Query: 75  FWDLRTRGCTNVL 87
            WD + + C   L
Sbjct: 364 VWDYKNKRCMKTL 376

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 23  ISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWGGATVLSGSHDRTVRFWDLRTRG 82
           +  GA D  + V D  T      L GH+  V SL  + G  V+SGS D ++R WD+ T  
Sbjct: 252 VVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSL-QFDGIHVVSGSLDTSIRVWDVETGN 310
Query: 83  CTNVLT 88
           C + LT
Sbjct: 311 CIHTLT 316

>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction Between The Nucleoporin Nup98 And The Mrna Export Factor Rae1 Length = 368

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 23/108 (21%)
Query: 1   MHDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWG 60
           MH G V DVC+ +D S      +   + D    + D ++ QA Q ++ H   V +++ W 
Sbjct: 84  MHTGPVLDVCWSDDGSK-----VFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIH-WI 136
Query: 61  GA----TVLSGSHDRTVRFWDLRTRG------------CTNVLTPITV 92
            A     V++GS D+T++FWD R+              C +V+ P+ V
Sbjct: 137 KAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAV 184

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 23  ISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWGGATVLSGSHDRTVRFWDLRTRG 82
           I  G  D  I + D  T +  + L+GH+G VL L  +    +++GS D TVR WD+ T  
Sbjct: 146 IVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCL-QYDERVIITGSSDSTVRVWDVNTGE 204
Query: 83  CTNVL 87
             N L
Sbjct: 205 MLNTL 209

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	93
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.82
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.81
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.8
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.8
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.8
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.79
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.78
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.78
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.78
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.78
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.78
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.78
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.77
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.77
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.76
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.75
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.75
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.75
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.74
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.74
2pm7_B	297	Protein transport protein SEC13, protein transport	99.74
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.74
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.74
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.74
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.73
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.73
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.73
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.73
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.73
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.73
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.73
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.72
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.72
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.72
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.72
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.72
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.72
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.72
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.72
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.71
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.71
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.71
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.71
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.71
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.7
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.7
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.7
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.7
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.69
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.69
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.69
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.69
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.69
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.68
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.68
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.67
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.66
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.66
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.66
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.66
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.66
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.65
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.65
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.65
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.65
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.65
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.65
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.65
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.64
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.64
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.63
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.63
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.63
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.63
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.63
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.63
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.63
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.63
3jro_A	753	Fusion protein of protein transport protein SEC13	99.62
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.62
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.62
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.62
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.61
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.61
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.61
2pm7_B	297	Protein transport protein SEC13, protein transport	99.61
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.61
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.61
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.61
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.61
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.6
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.6
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.6
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.6
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.6
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.6
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.6
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.59
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.59
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.59
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.58
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.58
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.58
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.57
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.57
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.57
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.57
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.56
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.56
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.55
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.55
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.55
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.54
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.54
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.53
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.53
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.53
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.52
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.52
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.52
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.51
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.5
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.48
3jro_A	753	Fusion protein of protein transport protein SEC13	99.47
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.39
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.36
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.33
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.26
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.21
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.05
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.03
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.02
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.0
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	98.98
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	98.98
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	98.89
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	98.88
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	98.88
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	98.88
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	98.87
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	98.85
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	98.84
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	98.84
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	98.82
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	98.79
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	98.76
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	98.75
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.73
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	98.73
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	98.72
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	98.69
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	98.69
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	98.63
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	98.63
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	98.62
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	98.61
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	98.61
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	98.61
1k32_A	1045	Tricorn protease; protein degradation, substrate g	98.6
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	98.54
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	98.53
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	98.48
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	98.42
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	98.4
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	98.38
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	98.36
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	98.36
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	98.35
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	98.35
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	98.34
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	98.33
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	98.3
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	98.26
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	98.23
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.23
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	98.2
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.18
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	98.17
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	98.16
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	98.14
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	98.11
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	98.06
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	97.98
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	97.97
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	97.95
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	97.91
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	97.91
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	97.9
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	97.89
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	97.88
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	97.84
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	97.83
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	97.81
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	97.78
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	97.75
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	97.74
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	97.73
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	97.72
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	97.72
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	97.72
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	97.71
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	97.62
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	97.61
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	97.54
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	97.54
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	97.47
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	97.4
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	97.37
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	97.31
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	97.28
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	97.27
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	97.26
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	97.25
2qe8_A	343	Uncharacterized protein; structural genomics, join	97.17
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	97.11
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	97.05
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	96.96
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	96.88
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	96.87
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	96.78
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	96.75
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	96.59
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	96.58
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	96.56
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	96.48
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	96.39
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	96.37
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	96.36
2ece_A	462	462AA long hypothetical selenium-binding protein;	96.33
2qe8_A	343	Uncharacterized protein; structural genomics, join	96.32
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	96.29
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	96.25
2ece_A	462	462AA long hypothetical selenium-binding protein;	96.1
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	95.94
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	95.82
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	95.71
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	95.67
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	95.6
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	95.42
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	95.32
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	95.28
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	94.84
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	94.58
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	94.45
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	94.27
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	94.26
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	93.98
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	93.92
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	93.87
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	93.75
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	93.64
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	93.58
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	93.05
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	92.9
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	92.54
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	92.34
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	92.1
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	91.44
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	90.73
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	90.41
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	90.37
3f7f_A	729	Nucleoporin NUP120; nuclear pore complex, macromol	90.18
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	90.06
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	89.02
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	88.18
3v65_B	386	Low-density lipoprotein receptor-related protein;	87.67
2p4o_A	306	Hypothetical protein; putative lactonase, structur	87.14
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	86.23
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	85.94
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	85.71
3f7f_A	729	Nucleoporin NUP120; nuclear pore complex, macromol	85.67
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	85.01
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	84.0
3v65_B	386	Low-density lipoprotein receptor-related protein;	82.03
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	81.49
3kya_A	496	Putative phosphatase; structural genomics, joint c	80.1

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.82  E-value=5.9e-19  Score=99.66  Aligned_cols=86  Identities=10%  Similarity=0.079  Sum_probs=79.3

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      |++.|.+++|+|+    ++.+++++ .|+.|++||+.++..+..+..|...+.++ |+++++.+++++.|+.+++||+++
T Consensus        12 h~~~V~~~~fsp~----~~~l~s~~-~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~   86 (304)
T 2ynn_A           12 RSDRVKGIDFHPT----EPWVLTTL-YSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT   86 (304)
T ss_dssp             ECSCEEEEEECSS----SSEEEEEE-TTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT
T ss_pred             CCCceEEEEECCC----CCEEEEEc-CCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence            7889999999999    78888877 69999999999999999999999999999 999999999999999999999999


Q ss_pred             CceeeEecCccC
Q psy14456         81 RGCTNVLTPITV   92 (93)
Q Consensus        81 ~~~~~~~~~~~~   92 (93)
                      ++++..+..|..
T Consensus        87 ~~~~~~~~~h~~   98 (304)
T 2ynn_A           87 GEKVVDFEAHPD   98 (304)
T ss_dssp             CCEEEEEECCSS
T ss_pred             CcEEEEEeCCCC
Confidence            999988887753

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.81  E-value=4.2e-19  Score=102.61  Aligned_cols=75  Identities=13%  Similarity=0.038  Sum_probs=67.8

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEe-eccccceEEE-EecCCCEEEEecCCCcEEEEeCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQAL-SGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLR   79 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~-~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~   79 (93)
                      |...|++++|+|+    ++++++++ .|+.|++||+++++++..+ .+|...|.++ |+|++.+|++++.|++|++||+.
T Consensus       268 ~~~~V~~~~~Spd----g~~lasgs-~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip  342 (365)
T 4h5i_A          268 RFKGITSMDVDMK----GELAVLAS-NDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLP  342 (365)
T ss_dssp             SCSCEEEEEECTT----SCEEEEEE-TTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECC
T ss_pred             CCCCeEeEEECCC----CCceEEEc-CCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence            5678999999999    78877766 6999999999999998875 6899999999 99999999999999999999997


Q ss_pred             CC
Q psy14456         80 TR   81 (93)
Q Consensus        80 ~~   81 (93)
                      ..
T Consensus       343 ~~  344 (365)
T 4h5i_A          343 LN  344 (365)
T ss_dssp             TT
T ss_pred             CC
Confidence            54

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.80  E-value=1.7e-18  Score=98.64  Aligned_cols=85  Identities=29%  Similarity=0.502  Sum_probs=78.2

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      |..+|.+++|+|+    +..+++++ .|+.|++||++.+.....+.+|...+.++ |+|++..+++++.|+.+++||+++
T Consensus       205 h~~~v~~l~~spd----~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~  279 (321)
T 3ow8_A          205 HAMPIRSLTFSPD----SQLLVTAS-DDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGT  279 (321)
T ss_dssp             CSSCCCEEEECTT----SCEEEEEC-TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             cCCceeEEEEcCC----CCEEEEEc-CCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCC
Confidence            6788999999998    77777776 69999999999999999999999999999 999999999999999999999999


Q ss_pred             CceeeEecCcc
Q psy14456         81 RGCTNVLTPIT   91 (93)
Q Consensus        81 ~~~~~~~~~~~   91 (93)
                      +.+++.+..|.
T Consensus       280 ~~~~~~~~~h~  290 (321)
T 3ow8_A          280 RTCVHTFFDHQ  290 (321)
T ss_dssp             TEEEEEECCCS
T ss_pred             CEEEEEEcCCC
Confidence            99999987765

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.80  E-value=6.8e-19  Score=102.93  Aligned_cols=85  Identities=28%  Similarity=0.460  Sum_probs=78.4

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      |+++|++++|+|+    +..+++++ .|+.|++||..++.....+.+|...|.++ |++++.++++++.|+.+++||+++
T Consensus       107 h~~~V~~~~~~p~----~~~l~s~s-~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~  181 (410)
T 1vyh_C          107 HRSPVTRVIFHPV----FSVMVSAS-EDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG  181 (410)
T ss_dssp             CSSCEEEEEECSS----SSEEEEEE-SSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS
T ss_pred             cCCcEEEEEEcCC----CCEEEEEe-CCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Confidence            7889999999998    77888876 69999999999999999999999999999 999999999999999999999999


Q ss_pred             CceeeEecCcc
Q psy14456         81 RGCTNVLTPIT   91 (93)
Q Consensus        81 ~~~~~~~~~~~   91 (93)
                      +.+++.+.+|.
T Consensus       182 ~~~~~~~~~h~  192 (410)
T 1vyh_C          182 FECIRTMHGHD  192 (410)
T ss_dssp             SCEEECCCCCS
T ss_pred             CceeEEEcCCC
Confidence            99888887764

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.80  E-value=1.6e-18  Score=104.11  Aligned_cols=83  Identities=31%  Similarity=0.503  Sum_probs=74.4

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      |++.|++++|+|+    ++++++++ .|+.|++||. +++++..+.+|.+.|.++ |+|+++++++++.|+.+++||. +
T Consensus        15 H~~~V~~~a~spd----g~~las~~-~d~~v~iWd~-~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~-~   87 (577)
T 2ymu_A           15 HSSSVRGVAFSPD----GQTIASAS-DDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-N   87 (577)
T ss_dssp             CSSCEEEEEECTT----SSCEEEEE-TTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET-T
T ss_pred             CCCcEEEEEECCC----CCEEEEEe-CCCEEEEEEC-CCCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEEC-C
Confidence            8899999999999    78888876 6999999994 678889999999999999 9999999999999999999995 5


Q ss_pred             CceeeEecCcc
Q psy14456         81 RGCTNVLTPIT   91 (93)
Q Consensus        81 ~~~~~~~~~~~   91 (93)
                      ++.+..+..|.
T Consensus        88 ~~~~~~~~~~~   98 (577)
T 2ymu_A           88 GQLLQTLTGHS   98 (577)
T ss_dssp             SCEEEEECCCS
T ss_pred             CCEEEEEECCC
Confidence            77777777664

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.79  E-value=3.1e-18  Score=98.49  Aligned_cols=82  Identities=24%  Similarity=0.320  Sum_probs=74.0

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCC-CEEEEecCCCcEEEEeCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGG-ATVLSGSHDRTVRFWDLR   79 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~-~~~~s~~~~~~i~~~d~~   79 (93)
                      |++.|++++|+|+    ++.+++++ .|+.|++||+++++++..+.+|.+.|.++ |++++ ..+++++.|+.+++||++
T Consensus       126 H~~~V~~v~~spd----g~~l~sgs-~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~  200 (344)
T 4gqb_B          126 HDDIVSTVSVLSS----GTQAVSGS-KDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTR  200 (344)
T ss_dssp             CSSCEEEEEECTT----SSEEEEEE-TTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETT
T ss_pred             CCCCEEEEEECCC----CCEEEEEe-CCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeecccccccccccc
Confidence            7889999999998    78888876 69999999999999999999999999999 99976 578999999999999999


Q ss_pred             CCceeeEec
Q psy14456         80 TRGCTNVLT   88 (93)
Q Consensus        80 ~~~~~~~~~   88 (93)
                      ++++...+.
T Consensus       201 ~~~~~~~~~  209 (344)
T 4gqb_B          201 CPKPASQIG  209 (344)
T ss_dssp             SSSCEEECC
T ss_pred             ccceeeeee
Confidence            988776654

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.78  E-value=3.7e-18  Score=99.81  Aligned_cols=85  Identities=27%  Similarity=0.462  Sum_probs=78.3

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      |++.|.+++|+|+    +..+++++ .|+.|++||+.++.++..+.+|...+.++ |+|++..+++++.|+.+++||+++
T Consensus       149 h~~~V~~v~~~~~----~~~l~sgs-~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~  223 (410)
T 1vyh_C          149 HTDSVQDISFDHS----GKLLASCS-ADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT  223 (410)
T ss_dssp             CSSCEEEEEECTT----SSEEEEEE-TTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred             cCCcEEEEEEcCC----CCEEEEEe-CCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Confidence            7899999999998    67777776 69999999999999999999999999999 999999999999999999999999


Q ss_pred             CceeeEecCcc
Q psy14456         81 RGCTNVLTPIT   91 (93)
Q Consensus        81 ~~~~~~~~~~~   91 (93)
                      +.++..+.+|.
T Consensus       224 ~~~~~~~~~h~  234 (410)
T 1vyh_C          224 GYCVKTFTGHR  234 (410)
T ss_dssp             CCEEEEEECCS
T ss_pred             CcEEEEEeCCC
Confidence            99988887764

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.78  E-value=1.4e-17  Score=93.94  Aligned_cols=85  Identities=24%  Similarity=0.393  Sum_probs=78.0

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      |++.|.+++|+|+    ++.+++++ .|+.+++|+..+++....+.+|...+.++ |++++..+++++.|+.+++||+++
T Consensus        22 h~~~v~~~~~s~~----~~~l~s~~-~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~   96 (312)
T 4ery_A           22 HTKAVSSVKFSPN----GEWLASSS-ADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS   96 (312)
T ss_dssp             CSSCEEEEEECTT----SSEEEEEE-TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             cCCcEEEEEECCC----CCEEEEee-CCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCC
Confidence            7889999999998    78888876 69999999999999988999999999999 999999999999999999999999


Q ss_pred             CceeeEecCcc
Q psy14456         81 RGCTNVLTPIT   91 (93)
Q Consensus        81 ~~~~~~~~~~~   91 (93)
                      +.++..+..|.
T Consensus        97 ~~~~~~~~~~~  107 (312)
T 4ery_A           97 GKCLKTLKGHS  107 (312)
T ss_dssp             CCEEEEEECCS
T ss_pred             CcEEEEEcCCC
Confidence            99888887664

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.78  E-value=1.5e-17  Score=93.90  Aligned_cols=85  Identities=26%  Similarity=0.367  Sum_probs=75.5

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      |..+|.+++|+|+    ++.+++++ .|+.|++||+++++.+..+.+|...+.++ |+|++.++++++.|+.+++||+++
T Consensus        54 ~~~~v~~~~~~~~----~~~l~s~s-~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~  128 (304)
T 2ynn_A           54 TETPVRAGKFIAR----KNWIIVGS-DDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN  128 (304)
T ss_dssp             CSSCEEEEEEEGG----GTEEEEEE-TTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGG
T ss_pred             cCCcEEEEEEeCC----CCEEEEEC-CCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCC
Confidence            6788999999998    78888876 69999999999999999999999999999 999999999999999999999998


Q ss_pred             Cc-eeeEecCcc
Q psy14456         81 RG-CTNVLTPIT   91 (93)
Q Consensus        81 ~~-~~~~~~~~~   91 (93)
                      +. ..+.+.+|.
T Consensus       129 ~~~~~~~~~~h~  140 (304)
T 2ynn_A          129 NWALEQTFEGHE  140 (304)
T ss_dssp             TTEEEEEECCCC
T ss_pred             CcchhhhhcccC
Confidence            74 455666554

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.78  E-value=9.1e-18  Score=96.57  Aligned_cols=84  Identities=14%  Similarity=0.258  Sum_probs=71.8

Q ss_pred             ccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeE----EeeccccceEEE-EecCCCEEEEecCCCcEEEEe
Q psy14456          3 DGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQ----ALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWD   77 (93)
Q Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~----~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d   77 (93)
                      .+.|.+++|+|+    + .+++++ .|+.|++||+++++.+.    .+.+|.+.|.++ |++++..+++++.|+.|++||
T Consensus        82 ~~~v~~~~~s~d----~-~l~~~s-~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd  155 (344)
T 4gqb_B           82 EAGVADLTWVGE----R-GILVAS-DSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWD  155 (344)
T ss_dssp             SSCEEEEEEETT----T-EEEEEE-TTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             CCCEEEEEEeCC----C-eEEEEE-CCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence            467999999997    3 466655 69999999999886543    345899999999 999999999999999999999


Q ss_pred             CCCCceeeEecCccC
Q psy14456         78 LRTRGCTNVLTPITV   92 (93)
Q Consensus        78 ~~~~~~~~~~~~~~~   92 (93)
                      ++++.+++.+.+|..
T Consensus       156 ~~~~~~~~~~~~h~~  170 (344)
T 4gqb_B          156 LAQQVVLSSYRAHAA  170 (344)
T ss_dssp             TTTTEEEEEECCCSS
T ss_pred             CCCCcEEEEEcCcCC
Confidence            999999999988753

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.78  E-value=5.7e-18  Score=96.23  Aligned_cols=87  Identities=26%  Similarity=0.358  Sum_probs=75.0

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCC-----CceeEEeeccccceEEE-EecCCCEEEEecCCCcEEE
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCAT-----GQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRF   75 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~-----~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~   75 (93)
                      |++.|.+++|+|++   .+.+++++ .|+.|++|++..     +..+..+.+|...+.++ |++++.++++++.|+.+++
T Consensus        16 H~~~V~~l~~~~~~---~~~l~s~s-~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~   91 (319)
T 3frx_A           16 HNGWVTSLATSAGQ---PNLLLSAS-RDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL   91 (319)
T ss_dssp             CSSCEEEEEECSSC---TTEEEEEE-TTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             ccceEEEEEccCCC---ccEEEEec-CCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEE
Confidence            88999999999973   46677766 799999999764     23467788999999999 9999999999999999999


Q ss_pred             EeCCCCceeeEecCccC
Q psy14456         76 WDLRTRGCTNVLTPITV   92 (93)
Q Consensus        76 ~d~~~~~~~~~~~~~~~   92 (93)
                      ||+++++.++.+.+|..
T Consensus        92 wd~~~~~~~~~~~~h~~  108 (319)
T 3frx_A           92 WDVATGETYQRFVGHKS  108 (319)
T ss_dssp             EETTTTEEEEEEECCSS
T ss_pred             EECCCCCeeEEEccCCC
Confidence            99999999988887753

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.78  E-value=2.2e-17  Score=93.18  Aligned_cols=85  Identities=33%  Similarity=0.595  Sum_probs=78.1

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      |...|.+++|+|+    ++.+++++ .|+.+++||+++++++..+.+|...+.++ |++++..+++++.|+.+++||+++
T Consensus        64 h~~~v~~~~~~~~----~~~l~s~~-~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~  138 (312)
T 4ery_A           64 HKLGISDVAWSSD----SNLLVSAS-DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT  138 (312)
T ss_dssp             CSSCEEEEEECTT----SSEEEEEE-TTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred             CCCceEEEEEcCC----CCEEEEEC-CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Confidence            7789999999998    78888877 69999999999999999999999999999 999999999999999999999999


Q ss_pred             CceeeEecCcc
Q psy14456         81 RGCTNVLTPIT   91 (93)
Q Consensus        81 ~~~~~~~~~~~   91 (93)
                      +.+...+..|.
T Consensus       139 ~~~~~~~~~~~  149 (312)
T 4ery_A          139 GKCLKTLPAHS  149 (312)
T ss_dssp             CCEEEEECCCS
T ss_pred             CEEEEEecCCC
Confidence            99888887664

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.77  E-value=1.7e-17  Score=94.45  Aligned_cols=85  Identities=22%  Similarity=0.363  Sum_probs=77.2

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      |...|.+++|+|+    ++++++++ .|+.|++||+++++.+..+.+|...+.++ |+|++.++++++.|+.+++||+++
T Consensus       163 ~~~~v~~~~~spd----g~~lasg~-~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~  237 (321)
T 3ow8_A          163 RGKFILSIAYSPD----GKYLASGA-IDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQH  237 (321)
T ss_dssp             SSSCEEEEEECTT----SSEEEEEE-TTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTT
T ss_pred             CCceEEEEEECCC----CCEEEEEc-CCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCC
Confidence            4567999999998    78888776 69999999999999999999999999999 999999999999999999999999


Q ss_pred             CceeeEecCcc
Q psy14456         81 RGCTNVLTPIT   91 (93)
Q Consensus        81 ~~~~~~~~~~~   91 (93)
                      +.....+.+|.
T Consensus       238 ~~~~~~~~~h~  248 (321)
T 3ow8_A          238 ANLAGTLSGHA  248 (321)
T ss_dssp             CCEEEEECCCS
T ss_pred             cceeEEEcCCC
Confidence            98888887765

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.77  E-value=3.3e-17  Score=93.10  Aligned_cols=83  Identities=28%  Similarity=0.528  Sum_probs=73.8

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      |+..|.+++|+|+    +.++++++ .|+.|++||+++++.+..+.+|...+.++ |++++..+++++.|+.+++||++ 
T Consensus        64 h~~~v~~~~~s~d----g~~l~s~s-~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-  137 (319)
T 3frx_A           64 HSHIVQDCTLTAD----GAYALSAS-WDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-  137 (319)
T ss_dssp             CSSCEEEEEECTT----SSEEEEEE-TTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-
T ss_pred             CcccEEEEEECCC----CCEEEEEe-CCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-
Confidence            7889999999998    78888877 69999999999999999999999999999 99999999999999999999996 


Q ss_pred             CceeeEecCc
Q psy14456         81 RGCTNVLTPI   90 (93)
Q Consensus        81 ~~~~~~~~~~   90 (93)
                      +.++..+.+|
T Consensus       138 ~~~~~~~~~h  147 (319)
T 3frx_A          138 GQCLATLLGH  147 (319)
T ss_dssp             SCEEEEECCC
T ss_pred             CCeEEEEecc
Confidence            4455555544

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.76  E-value=4e-17  Score=93.37  Aligned_cols=82  Identities=27%  Similarity=0.449  Sum_probs=74.6

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      |++.|.+++|+|+    +..+++++ .|+.|++||++++.++..+.+|...+.++ |+|++..+++++.|+.+++||+++
T Consensus       183 h~~~v~~~~~~~~----~~~l~sg~-~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~  257 (340)
T 1got_B          183 HTGDVMSLSLAPD----TRLFVSGA-CDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA  257 (340)
T ss_dssp             CSSCEEEEEECTT----SSEEEEEE-TTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             CCCceEEEEECCC----CCEEEEEe-CCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCC
Confidence            7889999999998    67777776 69999999999999999999999999999 999999999999999999999998


Q ss_pred             CceeeEec
Q psy14456         81 RGCTNVLT   88 (93)
Q Consensus        81 ~~~~~~~~   88 (93)
                      +..+..+.
T Consensus       258 ~~~~~~~~  265 (340)
T 1got_B          258 DQELMTYS  265 (340)
T ss_dssp             TEEEEEEC
T ss_pred             CcEEEEEc
Confidence            87766654

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.75  E-value=7.3e-17  Score=92.89  Aligned_cols=86  Identities=26%  Similarity=0.489  Sum_probs=77.0

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-Eec--CCCEEEEecCCCcEEEEeC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNW--GGATVLSGSHDRTVRFWDL   78 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~--~~~~~~s~~~~~~i~~~d~   78 (93)
                      |++.|.+++|+|+    +..+++++ .|+.|++||+++++.+..+.+|...+.++ +++  ++..+++++.|+.+++||+
T Consensus       153 h~~~v~~~~~~~~----~~~l~t~s-~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~  227 (354)
T 2pbi_B          153 HTNYLSACSFTNS----DMQILTAS-GDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDM  227 (354)
T ss_dssp             CSSCEEEEEECSS----SSEEEEEE-TTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEET
T ss_pred             cCCcEEEEEEeCC----CCEEEEEe-CCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEEC
Confidence            7888999999998    67788776 69999999999999999999999999999 877  4689999999999999999


Q ss_pred             CCCceeeEecCccC
Q psy14456         79 RTRGCTNVLTPITV   92 (93)
Q Consensus        79 ~~~~~~~~~~~~~~   92 (93)
                      +++.++..+..|..
T Consensus       228 ~~~~~~~~~~~h~~  241 (354)
T 2pbi_B          228 RSGQCVQAFETHES  241 (354)
T ss_dssp             TTCCEEEEECCCSS
T ss_pred             CCCcEEEEecCCCC
Confidence            99999988877653

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.75  E-value=5e-17  Score=94.47  Aligned_cols=83  Identities=25%  Similarity=0.377  Sum_probs=76.6

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      |.+.|.+++|+|+    ++.+++++ .|+.|++||+++++.+..+.+|...+.++ |+|++..+++++.|+.+++||+++
T Consensus       138 h~~~v~~~~~~~~----~~~l~s~s-~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~  212 (420)
T 3vl1_A          138 HVSEITKLKFFPS----GEALISSS-QDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGT  212 (420)
T ss_dssp             SSSCEEEEEECTT----SSEEEEEE-TTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT
T ss_pred             ccCccEEEEECCC----CCEEEEEe-CCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCC
Confidence            7889999999998    77777776 69999999999999999999999999999 999999999999999999999999


Q ss_pred             CceeeEecC
Q psy14456         81 RGCTNVLTP   89 (93)
Q Consensus        81 ~~~~~~~~~   89 (93)
                      ++....+..
T Consensus       213 ~~~~~~~~~  221 (420)
T 3vl1_A          213 GTTIHTFNR  221 (420)
T ss_dssp             TEEEEEECB
T ss_pred             CceeEEeec
Confidence            998888864

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.75  E-value=7.6e-17  Score=91.88  Aligned_cols=82  Identities=23%  Similarity=0.454  Sum_probs=75.7

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      |++.|++++|+|+    ++.+++++ .|+.|++||+.+++.+..+.+|...+.++ |++++..+++++.|+.+.+||+++
T Consensus        31 h~~~v~~~~~s~~----~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~  105 (369)
T 3zwl_B           31 HERPLTQVKYNKE----GDLLFSCS-KDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSN  105 (369)
T ss_dssp             CSSCEEEEEECTT----SCEEEEEE-SSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTT
T ss_pred             eeceEEEEEEcCC----CCEEEEEe-CCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence            8899999999998    78888876 59999999999999999999999999999 999999999999999999999999


Q ss_pred             CceeeEec
Q psy14456         81 RGCTNVLT   88 (93)
Q Consensus        81 ~~~~~~~~   88 (93)
                      ++....+.
T Consensus       106 ~~~~~~~~  113 (369)
T 3zwl_B          106 GQCVATWK  113 (369)
T ss_dssp             CCEEEEEE
T ss_pred             CcEEEEee
Confidence            98877765

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.74  E-value=4.9e-17  Score=93.61  Aligned_cols=75  Identities=16%  Similarity=0.286  Sum_probs=68.9

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCe-EEEEeCCCCceeEEee-c-cccceEEE-EecCCCEEEEecCCCcEEEEe
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCK-IYVTDCATGQAFQALS-G-HSGHVLSL-YNWGGATVLSGSHDRTVRFWD   77 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~-v~~~~~~~~~~~~~~~-~-~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d   77 (93)
                      |++.|.+++|+|+    +.++++++ .|+. |++||+++++++..+. + |...+.++ |+|++.++++++.|+.+++||
T Consensus       194 h~~~v~~~~~s~~----g~~l~s~s-~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~  268 (355)
T 3vu4_A          194 HTNPIKMVRLNRK----SDMVATCS-QDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFE  268 (355)
T ss_dssp             CSSCEEEEEECTT----SSEEEEEE-TTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEE
T ss_pred             cCCceEEEEECCC----CCEEEEEe-CCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEE
Confidence            7889999999998    78888876 6998 9999999999999997 5 99999999 999999999999999999999


Q ss_pred             CCCC
Q psy14456         78 LRTR   81 (93)
Q Consensus        78 ~~~~   81 (93)
                      ++.+
T Consensus       269 ~~~~  272 (355)
T 3vu4_A          269 IFND  272 (355)
T ss_dssp             SSCC
T ss_pred             ccCC
Confidence            9865

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.74  E-value=6.1e-17  Score=92.66  Aligned_cols=86  Identities=29%  Similarity=0.389  Sum_probs=73.8

Q ss_pred             CccceeEEEE-----Ee-cCCCCcceEEEeeeCCCeEEEEeCCCC-------ceeEEeeccccceEEE-EecCCCEEEEe
Q psy14456          2 HDGTVRDVCF-----IE-DTSNKSSLLISGGAGDCKIYVTDCATG-------QAFQALSGHSGHVLSL-YNWGGATVLSG   67 (93)
Q Consensus         2 h~~~v~~~~~-----~~-~~~~~~~~~~~~g~~~~~v~~~~~~~~-------~~~~~~~~~~~~v~~~-~~~~~~~~~s~   67 (93)
                      |++.|++++|     ++ +    ++.+++++ .|+.|++|++...       .....+.+|...|.++ |++++.+++++
T Consensus        20 H~~~V~~~~~~~s~~~~~d----~~~l~sgs-~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~   94 (343)
T 2xzm_R           20 HSDWVTSIVAGFSQKENED----SPVLISGS-RDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISS   94 (343)
T ss_dssp             CSSCEEEEEECCCSSTTCC----CCEEEEEE-TTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEE
T ss_pred             chhhhhheeeEEEeecCCC----CCEEEEEc-CCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEE
Confidence            8899999999     55 4    67777766 6999999998743       3456788999999999 99999999999


Q ss_pred             cCCCcEEEEeCCCCceeeEecCccC
Q psy14456         68 SHDRTVRFWDLRTRGCTNVLTPITV   92 (93)
Q Consensus        68 ~~~~~i~~~d~~~~~~~~~~~~~~~   92 (93)
                      +.|+.+++||+++++.+..+.+|..
T Consensus        95 s~D~~v~lwd~~~~~~~~~~~~h~~  119 (343)
T 2xzm_R           95 SWDKTLRLWDLRTGTTYKRFVGHQS  119 (343)
T ss_dssp             ETTSEEEEEETTSSCEEEEEECCCS
T ss_pred             cCCCcEEEEECCCCcEEEEEcCCCC
Confidence            9999999999999999888877753

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.74  E-value=5.8e-17  Score=91.26  Aligned_cols=84  Identities=19%  Similarity=0.245  Sum_probs=70.5

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCC--CceeEEeeccccceEEE-Eec--CCCEEEEecCCCcEEEE
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCAT--GQAFQALSGHSGHVLSL-YNW--GGATVLSGSHDRTVRFW   76 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~--~~~~~~~~~~~~~v~~~-~~~--~~~~~~s~~~~~~i~~~   76 (93)
                      |++.|.+++|+|+    ++++++++ .|+.|++|++..  .+.+..+.+|.+.|.++ |++  ++..+++++.|+.+++|
T Consensus         8 h~~~V~~~~~s~~----g~~las~s-~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW   82 (297)
T 2pm7_B            8 HNEMIHDAVMDYY----GKRMATCS-SDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW   82 (297)
T ss_dssp             CSSCEEEEEECTT----SSEEEEEE-TTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred             CcCceEEEEECCC----CCEEEEEe-CCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence            8899999999998    78888877 699999999874  35678889999999999 975  38899999999999999


Q ss_pred             eCCCCc--eeeEecCc
Q psy14456         77 DLRTRG--CTNVLTPI   90 (93)
Q Consensus        77 d~~~~~--~~~~~~~~   90 (93)
                      |++++.  .+..+..|
T Consensus        83 d~~~~~~~~~~~~~~h   98 (297)
T 2pm7_B           83 KEENGRWSQIAVHAVH   98 (297)
T ss_dssp             EBSSSCBCCCEEECCC
T ss_pred             EcCCCceEEEEEeecC
Confidence            998764  34444444

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.74  E-value=5.8e-17  Score=92.44  Aligned_cols=85  Identities=25%  Similarity=0.388  Sum_probs=70.1

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCC----ceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEE
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATG----QAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFW   76 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~----~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~   76 (93)
                      |++.|.+++|+|+    ++++++++ .|+.|++||++..    +++..+.+|...+.++ |+|++..+++++.|+.+++|
T Consensus       106 h~~~V~~v~~sp~----g~~las~s-~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW  180 (330)
T 2hes_X          106 HENEVKGVAWSND----GYYLATCS-RDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIW  180 (330)
T ss_dssp             ---CEEEEEECTT----SCEEEEEE-TTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEE
T ss_pred             CCCcEEEEEECCC----CCEEEEEe-CCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEE
Confidence            7789999999998    77888876 6999999999432    4567788999999999 99999999999999999999


Q ss_pred             eCCCC--ceeeEecCcc
Q psy14456         77 DLRTR--GCTNVLTPIT   91 (93)
Q Consensus        77 d~~~~--~~~~~~~~~~   91 (93)
                      |.+++  .++..+.+|.
T Consensus       181 ~~~~~~~~~~~~~~~h~  197 (330)
T 2hes_X          181 KDYDDDWECVAVLNGHE  197 (330)
T ss_dssp             EEETTEEEEEEEECCCS
T ss_pred             ECCCCCeeEEEEccCCC
Confidence            98776  5677776664

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.74  E-value=4.1e-17  Score=92.62  Aligned_cols=85  Identities=21%  Similarity=0.278  Sum_probs=69.8

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCc--eeEEeeccccceEEE-Eec--CCCEEEEecCCCcEEEE
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQ--AFQALSGHSGHVLSL-YNW--GGATVLSGSHDRTVRFW   76 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~--~~~~~~~~~~~v~~~-~~~--~~~~~~s~~~~~~i~~~   76 (93)
                      |++.|.+++|+|+    ++++++++ .|+.|++||++++.  .+..+.+|.+.|.++ |++  ++..+++++.|+.+++|
T Consensus        12 H~~~V~~v~~s~~----g~~lasgs-~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW   86 (316)
T 3bg1_A           12 HEDMIHDAQMDYY----GTRLATCS-SDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW   86 (316)
T ss_dssp             --CCEEEEEECGG----GCEEEEEE-TTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred             ccCeEEEeeEcCC----CCEEEEEe-CCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence            7899999999998    78888876 69999999998764  456788999999999 975  48899999999999999


Q ss_pred             eCCCCc--eeeEecCcc
Q psy14456         77 DLRTRG--CTNVLTPIT   91 (93)
Q Consensus        77 d~~~~~--~~~~~~~~~   91 (93)
                      |++++.  ....+..|.
T Consensus        87 d~~~~~~~~~~~~~~h~  103 (316)
T 3bg1_A           87 REENGTWEKSHEHAGHD  103 (316)
T ss_dssp             CCSSSCCCEEEEECCCS
T ss_pred             ECCCCcceEEEEccCCC
Confidence            999874  455555553

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.74  E-value=1.5e-16  Score=90.98  Aligned_cols=85  Identities=28%  Similarity=0.530  Sum_probs=76.1

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      |.+.|.++.|+++    +. +++++ .|+.|++||+++++.+..+.+|...+.++ |+|++.++++++.|+.+++||+++
T Consensus       142 h~~~v~~~~~~~~----~~-l~s~s-~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~  215 (340)
T 1got_B          142 HTGYLSCCRFLDD----NQ-IVTSS-GDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE  215 (340)
T ss_dssp             CSSCEEEEEEEET----TE-EEEEE-TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             CCccEEEEEECCC----Cc-EEEEE-CCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence            7788999999987    43 66665 59999999999999999999999999999 999999999999999999999999


Q ss_pred             CceeeEecCccC
Q psy14456         81 RGCTNVLTPITV   92 (93)
Q Consensus        81 ~~~~~~~~~~~~   92 (93)
                      +.+...+..|..
T Consensus       216 ~~~~~~~~~h~~  227 (340)
T 1got_B          216 GMCRQTFTGHES  227 (340)
T ss_dssp             CSEEEEECCCSS
T ss_pred             CeeEEEEcCCcC
Confidence            999888877653

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.73  E-value=6.5e-17  Score=95.02  Aligned_cols=78  Identities=17%  Similarity=0.210  Sum_probs=63.9

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCce--eEEeeccccceEEE-Eec-CCCEEEEecCCCcEEEEe
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQA--FQALSGHSGHVLSL-YNW-GGATVLSGSHDRTVRFWD   77 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~--~~~~~~~~~~v~~~-~~~-~~~~~~s~~~~~~i~~~d   77 (93)
                      |..+|++++|+|..   ..++++++ .||.|++||+.++..  ...+.+|.+.|.++ |+| ++..|++++.|+.|++||
T Consensus       118 ~~~~V~~l~~~P~~---~~~lasGs-~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd  193 (435)
T 4e54_B          118 FDRRATSLAWHPTH---PSTVAVGS-KGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQD  193 (435)
T ss_dssp             CSSCEEEEEECSSC---TTCEEEEE-TTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEE
T ss_pred             CCCCEEEEEEeCCC---CCEEEEEe-CCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEee
Confidence            56789999999963   45555554 799999999987654  34556899999999 998 688999999999999999


Q ss_pred             CCCCce
Q psy14456         78 LRTRGC   83 (93)
Q Consensus        78 ~~~~~~   83 (93)
                      ++++..
T Consensus       194 ~~~~~~  199 (435)
T 4e54_B          194 FKGNIL  199 (435)
T ss_dssp             TTSCEE
T ss_pred             ccCCce
Confidence            987644

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.73  E-value=2.1e-16  Score=89.53  Aligned_cols=84  Identities=30%  Similarity=0.425  Sum_probs=70.7

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCc-----eeEEeeccccceEEE-EecCCCEEEEecCCCcEEE
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQ-----AFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRF   75 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~-----~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~   75 (93)
                      |++.|++++|+|++   ++++++++ .|+.|++||+...+     +...+.+|...|.++ |++++.++++++.|+.+.+
T Consensus        37 H~~~V~~v~~sp~~---~~~l~S~s-~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~  112 (340)
T 4aow_A           37 HNGWVTQIATTPQF---PDMILSAS-RDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRL  112 (340)
T ss_dssp             CSSCEEEEEECTTC---TTEEEEEE-TTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             ccCCEEEEEEeCCC---CCEEEEEc-CCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceE
Confidence            89999999999973   46677766 69999999987643     456778999999999 9999999999999999999


Q ss_pred             EeCCCCceeeEecC
Q psy14456         76 WDLRTRGCTNVLTP   89 (93)
Q Consensus        76 ~d~~~~~~~~~~~~   89 (93)
                      |+............
T Consensus       113 ~~~~~~~~~~~~~~  126 (340)
T 4aow_A          113 WDLTTGTTTRRFVG  126 (340)
T ss_dssp             EETTTTEEEEEEEC
T ss_pred             EeecccceeeeecC
Confidence            99998766555443

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.73  E-value=1.7e-16  Score=89.54  Aligned_cols=85  Identities=20%  Similarity=0.277  Sum_probs=71.8

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCC----ceeEEeeccccceEEE-Eec--CCCEEEEecCCCcEE
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATG----QAFQALSGHSGHVLSL-YNW--GGATVLSGSHDRTVR   74 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~----~~~~~~~~~~~~v~~~-~~~--~~~~~~s~~~~~~i~   74 (93)
                      |++.|++++|+|+    ++.+++++ .|+.|++|++.++    .....+.+|...+.++ |++  ++..+++++.|+.++
T Consensus        10 H~~~v~~~~~~~~----~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~   84 (351)
T 3f3f_A           10 HDDLVHDVVYDFY----GRHVATCS-SDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK   84 (351)
T ss_dssp             CSSCEEEEEECSS----SSEEEEEE-TTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred             cccceeEEEEcCC----CCEEEEee-CCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence            8899999999998    78888876 6999999999876    3566778899999999 998  589999999999999


Q ss_pred             EEeCCCC---------ceeeEecCcc
Q psy14456         75 FWDLRTR---------GCTNVLTPIT   91 (93)
Q Consensus        75 ~~d~~~~---------~~~~~~~~~~   91 (93)
                      +||++++         .....+..|.
T Consensus        85 vwd~~~~~~~~~~~~~~~~~~~~~~~  110 (351)
T 3f3f_A           85 LWEEDPDQEECSGRRWNKLCTLNDSK  110 (351)
T ss_dssp             EEEECTTSCTTSSCSEEEEEEECCCS
T ss_pred             EEecCCCcccccccCcceeeeecccC
Confidence            9999886         4455555543

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.73  E-value=1.5e-16  Score=96.89  Aligned_cols=82  Identities=21%  Similarity=0.235  Sum_probs=73.6

Q ss_pred             CccceeEEEEEecCCCCcc-eEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSS-LLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLR   79 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~-~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~   79 (93)
                      |++.|.+++|+|+    +. .+++++ .|+.+++||..++++...+.+|...|.++ |+|++.++++++.|+.+++||++
T Consensus       146 h~~~v~~v~f~p~----~~~~l~s~s-~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~  220 (611)
T 1nr0_A          146 QARAMNSVDFKPS----RPFRIISGS-DDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGV  220 (611)
T ss_dssp             CSSCEEEEEECSS----SSCEEEEEE-TTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             CCCCceEEEECCC----CCeEEEEEe-CCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECC
Confidence            7789999999998    55 466655 69999999999988888999999999999 99999999999999999999999


Q ss_pred             CCceeeEec
Q psy14456         80 TRGCTNVLT   88 (93)
Q Consensus        80 ~~~~~~~~~   88 (93)
                      ++++...+.
T Consensus       221 ~g~~~~~~~  229 (611)
T 1nr0_A          221 DGTKTGVFE  229 (611)
T ss_dssp             TCCEEEECB
T ss_pred             CCcEeeeec
Confidence            998877773

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.73  E-value=2.9e-16  Score=89.86  Aligned_cols=74  Identities=23%  Similarity=0.483  Sum_probs=68.4

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      |+..|.+++|+|+    +.++++++ .|+.|++||+++++.+..+.+|...+.++ |+|++..+++++.|+.+++||+..
T Consensus        75 h~~~V~~~~~~~~----~~~l~s~s-~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~  149 (343)
T 2xzm_R           75 HNHFVSDLALSQE----NCFAISSS-WDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG  149 (343)
T ss_dssp             CSSCEEEEEECSS----TTEEEEEE-TTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSS
T ss_pred             CCCceEEEEECCC----CCEEEEEc-CCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccC
Confidence            7789999999998    77777766 69999999999999999999999999999 999999999999999999999974

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.73  E-value=1.4e-16  Score=97.01  Aligned_cols=82  Identities=29%  Similarity=0.503  Sum_probs=73.9

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEee-------ccccceEEE-EecCCCEEEEecCCCcE
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALS-------GHSGHVLSL-YNWGGATVLSGSHDRTV   73 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~-------~~~~~v~~~-~~~~~~~~~s~~~~~~i   73 (93)
                      |++.|.+++|+|+    ++.+++++ .|+.|++||..+++.+..+.       +|.+.|.++ |+|++..+++++.|+.+
T Consensus       189 H~~~V~~v~fspd----g~~las~s-~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v  263 (611)
T 1nr0_A          189 HTKFVHSVRYNPD----GSLFASTG-GDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTI  263 (611)
T ss_dssp             CSSCEEEEEECTT----SSEEEEEE-TTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             ccCceEEEEECCC----CCEEEEEE-CCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeE
Confidence            7889999999998    78888876 69999999999998887774       799999999 99999999999999999


Q ss_pred             EEEeCCCCceeeEec
Q psy14456         74 RFWDLRTRGCTNVLT   88 (93)
Q Consensus        74 ~~~d~~~~~~~~~~~   88 (93)
                      ++||++++++...+.
T Consensus       264 ~lWd~~~~~~~~~~~  278 (611)
T 1nr0_A          264 KIWNVATLKVEKTIP  278 (611)
T ss_dssp             EEEETTTTEEEEEEE
T ss_pred             EEEeCCCCceeeeec
Confidence            999999988877664

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.73  E-value=2e-16  Score=90.67  Aligned_cols=84  Identities=25%  Similarity=0.414  Sum_probs=71.4

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCC--ceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATG--QAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDL   78 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~--~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~   78 (93)
                      |++.|.+++|+|+    ++++++++ .|+.+++|+.+.+  .++..+.+|...|.++ |+|++.++++++.|+.+++||+
T Consensus        60 h~~~v~~~~~sp~----g~~l~s~s-~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~  134 (345)
T 3fm0_A           60 HQRTVRKVAWSPC----GNYLASAS-FDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEV  134 (345)
T ss_dssp             CSSCEEEEEECTT----SSEEEEEE-TTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred             cCCcEEEEEECCC----CCEEEEEE-CCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEEC
Confidence            7889999999998    78888876 6999999998876  4567888999999999 9999999999999999999999


Q ss_pred             CCCc---eeeEecCc
Q psy14456         79 RTRG---CTNVLTPI   90 (93)
Q Consensus        79 ~~~~---~~~~~~~~   90 (93)
                      +++.   ++..+..|
T Consensus       135 ~~~~~~~~~~~~~~h  149 (345)
T 3fm0_A          135 DEEDEYECVSVLNSH  149 (345)
T ss_dssp             CTTSCEEEEEEECCC
T ss_pred             CCCCCeEEEEEecCc
Confidence            8763   34445444

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.72  E-value=6.3e-16  Score=88.10  Aligned_cols=85  Identities=21%  Similarity=0.346  Sum_probs=74.5

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-Eec-CCCEEEEecCCCcEEEEeCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNW-GGATVLSGSHDRTVRFWDLR   79 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~-~~~~~~s~~~~~~i~~~d~~   79 (93)
                      |.+.|++++|+|+....+..+++++ .|+.|++||+.+++.+..+.+|...+.++ |+| ++..+++++.|+.+++||++
T Consensus        68 ~~~~v~~~~~~~~~~~~~~~l~~~~-~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~  146 (366)
T 3k26_A           68 ADENFYTCAWTYDSNTSHPLLAVAG-SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ  146 (366)
T ss_dssp             TTCCEEEEEEEECTTTCCEEEEEEE-TTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETT
T ss_pred             CCCcEEEEEeccCCCCCCCEEEEec-CCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEee
Confidence            5678999999998433234666665 69999999999999999999999999999 999 89999999999999999999


Q ss_pred             CCceeeEe
Q psy14456         80 TRGCTNVL   87 (93)
Q Consensus        80 ~~~~~~~~   87 (93)
                      +++....+
T Consensus       147 ~~~~~~~~  154 (366)
T 3k26_A          147 TDTLVAIF  154 (366)
T ss_dssp             TTEEEEEE
T ss_pred             cCeEEEEe
Confidence            99888887

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.72  E-value=2.4e-16  Score=91.63  Aligned_cols=85  Identities=24%  Similarity=0.438  Sum_probs=74.5

Q ss_pred             CccceeEEEEEe-cCCCCcceEEEeeeCCCeEEEEeCCCC-------ceeEEeeccccceEEE-EecCC-CEEEEecCCC
Q psy14456          2 HDGTVRDVCFIE-DTSNKSSLLISGGAGDCKIYVTDCATG-------QAFQALSGHSGHVLSL-YNWGG-ATVLSGSHDR   71 (93)
Q Consensus         2 h~~~v~~~~~~~-~~~~~~~~~~~~g~~~~~v~~~~~~~~-------~~~~~~~~~~~~v~~~-~~~~~-~~~~s~~~~~   71 (93)
                      |++.|++++|+| +    +..+++++ .|+.|++|++.++       ..+..+.+|...+.++ |+|++ ..+++++.|+
T Consensus        80 h~~~V~~~~~~p~~----~~~l~s~s-~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg  154 (402)
T 2aq5_A           80 HTAPVLDIAWCPHN----DNVIASGS-EDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDN  154 (402)
T ss_dssp             CSSCEEEEEECTTC----TTEEEEEE-TTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTS
T ss_pred             CCCCEEEEEeCCCC----CCEEEEEe-CCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCC
Confidence            788999999999 6    67777766 6999999999887       5677888999999999 99987 6999999999


Q ss_pred             cEEEEeCCCCceeeEe--cCcc
Q psy14456         72 TVRFWDLRTRGCTNVL--TPIT   91 (93)
Q Consensus        72 ~i~~~d~~~~~~~~~~--~~~~   91 (93)
                      .+.+||++++.....+  ..|.
T Consensus       155 ~i~iwd~~~~~~~~~~~~~~~~  176 (402)
T 2aq5_A          155 VILVWDVGTGAAVLTLGPDVHP  176 (402)
T ss_dssp             CEEEEETTTTEEEEEECTTTCC
T ss_pred             EEEEEECCCCCccEEEecCCCC
Confidence            9999999999988888  4443

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.72  E-value=3.4e-16  Score=89.30  Aligned_cols=85  Identities=22%  Similarity=0.408  Sum_probs=66.0

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCC-------CceeEEeeccccceEEE-EecCCCEEEEecCCCcE
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCAT-------GQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTV   73 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~-------~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i   73 (93)
                      |++.|.+++|+|+    ++.+++++ .|+.|++|+.+.       ...+..+.+|...|.++ |+|++.++++++.|+.+
T Consensus        57 h~~~v~~v~~sp~----~~~las~s-~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v  131 (330)
T 2hes_X           57 HKKAIRSVAWRPH----TSLLAAGS-FDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSV  131 (330)
T ss_dssp             CCSCEEEEEECTT----SSEEEEEE-TTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCE
T ss_pred             ccCCEEEEEECCC----CCEEEEEe-CCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEE
Confidence            8889999999998    77777776 699999999853       34567788999999999 99999999999999999


Q ss_pred             EEEeCCCC----ceeeEecCcc
Q psy14456         74 RFWDLRTR----GCTNVLTPIT   91 (93)
Q Consensus        74 ~~~d~~~~----~~~~~~~~~~   91 (93)
                      ++||++..    .++..+..|.
T Consensus       132 ~iwd~~~~~~~~~~~~~~~~h~  153 (330)
T 2hes_X          132 WIWETDESGEEYECISVLQEHS  153 (330)
T ss_dssp             EEEECCTTCCCCEEEEEECCCS
T ss_pred             EEEeccCCCCCeEEEEEeccCC
Confidence            99999532    4556666654

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.72  E-value=1.9e-16  Score=97.39  Aligned_cols=87  Identities=28%  Similarity=0.358  Sum_probs=74.8

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCC-----ceeEEeeccccceEEE-EecCCCEEEEecCCCcEEE
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATG-----QAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRF   75 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~-----~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~   75 (93)
                      |++.|++++|+|++   .+.+++++ .|+.|++|++...     .....+.+|...|.++ |++++..+++++.|+.|++
T Consensus       381 H~~~V~~v~~~~~~---~~~l~s~s-~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~v  456 (694)
T 3dm0_A          381 HTDMVTAIATPIDN---ADIIVSAS-RDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRL  456 (694)
T ss_dssp             CSSCEEEEECCTTC---CSEEEEEE-TTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             CCceeEEEEecCCC---CCEEEEEe-CCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEE
Confidence            89999999999873   45666665 6999999998753     3456788999999999 9999999999999999999


Q ss_pred             EeCCCCceeeEecCccC
Q psy14456         76 WDLRTRGCTNVLTPITV   92 (93)
Q Consensus        76 ~d~~~~~~~~~~~~~~~   92 (93)
                      ||+.++...+.+..|..
T Consensus       457 wd~~~~~~~~~~~~h~~  473 (694)
T 3dm0_A          457 WDLAAGVSTRRFVGHTK  473 (694)
T ss_dssp             EETTTTEEEEEEECCSS
T ss_pred             EECCCCcceeEEeCCCC
Confidence            99999999888887753

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.72  E-value=2.5e-16  Score=88.48  Aligned_cols=80  Identities=16%  Similarity=0.299  Sum_probs=68.1

Q ss_pred             eeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEee--ccccceEEE-EecCCCEEEEecCCCcEEEEeCCCCc
Q psy14456          6 VRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALS--GHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRG   82 (93)
Q Consensus         6 v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~--~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~   82 (93)
                      +.+++|+++     + ++++|. |+.|++||+.+++++..+.  +|...|.++ |+++++++++++.|+.+++||+++++
T Consensus        28 ~~~l~WS~~-----~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~  100 (318)
T 4ggc_A           28 LNLVDWSSG-----N-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK  100 (318)
T ss_dssp             CBCEEECTT-----S-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred             ceEEEECCC-----C-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCce
Confidence            367899975     3 455565 9999999999999877664  677789999 99999999999999999999999999


Q ss_pred             eeeEecCccC
Q psy14456         83 CTNVLTPITV   92 (93)
Q Consensus        83 ~~~~~~~~~~   92 (93)
                      +++.+..|..
T Consensus       101 ~~~~~~~h~~  110 (318)
T 4ggc_A          101 RLRNMTSHSA  110 (318)
T ss_dssp             EEEEEECCSS
T ss_pred             eEEEecCccc
Confidence            9988887653

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.72  E-value=2.4e-16  Score=91.58  Aligned_cols=85  Identities=27%  Similarity=0.370  Sum_probs=75.4

Q ss_pred             CccceeEEEEEecCCCCc-ceEEEeeeCCCeEEEEeCCCCceeEEe--eccccceEEE-EecCCCEEEEecCCCcEEEEe
Q psy14456          2 HDGTVRDVCFIEDTSNKS-SLLISGGAGDCKIYVTDCATGQAFQAL--SGHSGHVLSL-YNWGGATVLSGSHDRTVRFWD   77 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~~~~~~~~--~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d   77 (93)
                      |.+.|.+++|+|+    + ..+++++ .|+.|++||+++++.+..+  ..|...+.++ |++++..+++++.|+.+++||
T Consensus       130 h~~~v~~~~~~p~----~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd  204 (402)
T 2aq5_A          130 HTKRVGIVAWHPT----AQNVLLSAG-CDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIE  204 (402)
T ss_dssp             CSSCEEEEEECSS----BTTEEEEEE-TTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEE
T ss_pred             CCCeEEEEEECcC----CCCEEEEEc-CCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEe
Confidence            7889999999998    5 5666665 6999999999999998888  7899999999 999999999999999999999


Q ss_pred             CCCCceeeEe-cCcc
Q psy14456         78 LRTRGCTNVL-TPIT   91 (93)
Q Consensus        78 ~~~~~~~~~~-~~~~   91 (93)
                      ++++..+..+ ..|.
T Consensus       205 ~~~~~~~~~~~~~~~  219 (402)
T 2aq5_A          205 PRKGTVVAEKDRPHE  219 (402)
T ss_dssp             TTTTEEEEEEECSSC
T ss_pred             CCCCceeeeeccCCC
Confidence            9999888887 4543

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.72  E-value=1.5e-16  Score=89.39  Aligned_cols=77  Identities=26%  Similarity=0.352  Sum_probs=66.4

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      |...+..+.|+|.+   ...++++|..|+.|++||+++++++..+.+|.+.|.++ |+|++.++++++.|+.|++||+..
T Consensus       239 ~~~~v~~~~~~~~~---~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~  315 (318)
T 4ggc_A          239 AHSQVCSILWSPHY---KELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE  315 (318)
T ss_dssp             CSSCEEEEEEETTT---TEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred             ceeeeeeeeecccc---cceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence            45678899999983   33444555569999999999999999999999999999 999999999999999999999875


Q ss_pred             C
Q psy14456         81 R   81 (93)
Q Consensus        81 ~   81 (93)
                      .
T Consensus       316 ~  316 (318)
T 4ggc_A          316 L  316 (318)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.72  E-value=2.3e-16  Score=101.39  Aligned_cols=85  Identities=24%  Similarity=0.417  Sum_probs=78.9

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      |.+.|++++|+|+    ++.+++++ .|+.|++||..++..+..+.+|.+.|.++ |+|++.++++++.|+.+++||+.+
T Consensus       614 h~~~v~~~~~s~~----~~~l~s~~-~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~  688 (1249)
T 3sfz_A          614 HTDAVYHACFSQD----GQRIASCG-ADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT  688 (1249)
T ss_dssp             CSSCEEEEEECTT----SSEEEEEE-TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             ccccEEEEEECCC----CCEEEEEe-CCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCC
Confidence            7899999999999    78888877 69999999999999999999999999999 999999999999999999999999


Q ss_pred             CceeeEecCcc
Q psy14456         81 RGCTNVLTPIT   91 (93)
Q Consensus        81 ~~~~~~~~~~~   91 (93)
                      +..+..+..|.
T Consensus       689 ~~~~~~~~~~~  699 (1249)
T 3sfz_A          689 GKLVHTYDEHS  699 (1249)
T ss_dssp             CCEEEEEECCS
T ss_pred             CceEEEEcCCC
Confidence            99988887764

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.71  E-value=4.2e-16  Score=90.65  Aligned_cols=79  Identities=41%  Similarity=0.669  Sum_probs=71.8

Q ss_pred             ceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCCCce
Q psy14456          5 TVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRGC   83 (93)
Q Consensus         5 ~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~~   83 (93)
                      .|.+++|+|+    ++.+++++ .|+.|++||+++++.+..+.+|...+.++ |++++..+++++.|+.+++||++++++
T Consensus       125 ~v~~v~~s~d----g~~l~s~~-~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~  199 (393)
T 1erj_A          125 YIRSVCFSPD----GKFLATGA-EDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC  199 (393)
T ss_dssp             BEEEEEECTT----SSEEEEEE-TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred             eEEEEEECCC----CCEEEEEc-CCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCee
Confidence            4899999998    78888776 69999999999999999999999999999 999999999999999999999999887


Q ss_pred             eeEec
Q psy14456         84 TNVLT   88 (93)
Q Consensus        84 ~~~~~   88 (93)
                      ...+.
T Consensus       200 ~~~~~  204 (393)
T 1erj_A          200 SLTLS  204 (393)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            76654

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.71  E-value=1.1e-16  Score=93.13  Aligned_cols=85  Identities=16%  Similarity=0.220  Sum_probs=67.2

Q ss_pred             CccceeEEEEEecCCC----CcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCC-CEEEEecCCCcEEE
Q psy14456          2 HDGTVRDVCFIEDTSN----KSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGG-ATVLSGSHDRTVRF   75 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~----~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~-~~~~s~~~~~~i~~   75 (93)
                      |++.|.+++|+|....    .++.+++++ .|+++++||++++..+..+..|.+.+.++ |+|++ ..+++++.|+.+++
T Consensus       135 H~~~v~~v~~~p~~~~~~~~d~~~las~s-~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~  213 (393)
T 4gq1_A          135 HHNFVNDIDIADVYSADNRLAEQVIASVG-DDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRI  213 (393)
T ss_dssp             CSSCEEEEEEEEEECTTCSEEEEEEEEEE-TTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEE
T ss_pred             CCCceEEEEEccccccccCCCCCEEEEEE-CCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEE
Confidence            8899999999982100    156677766 69999999999888888888899999999 99976 57999999999999


Q ss_pred             EeCCCCceeeEe
Q psy14456         76 WDLRTRGCTNVL   87 (93)
Q Consensus        76 ~d~~~~~~~~~~   87 (93)
                      ||+++++.....
T Consensus       214 wd~~t~~~~~~~  225 (393)
T 4gq1_A          214 FDWTLNLSAEEN  225 (393)
T ss_dssp             EETTCCC-----
T ss_pred             EECCCCcccccc
Confidence            999987655443

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.71  E-value=3.7e-16  Score=96.86  Aligned_cols=85  Identities=11%  Similarity=0.096  Sum_probs=78.4

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      |++.|.+++|+|+    +..+++++ .++.|++||..++..+..+.+|...+.++ |+|++..+++++.|+.+.+||+.+
T Consensus        12 h~~~v~~i~~sp~----~~~la~~~-~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~   86 (814)
T 3mkq_A           12 RSDRVKGIDFHPT----EPWVLTTL-YSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT   86 (814)
T ss_dssp             ECSCEEEEEECSS----SSEEEEEE-TTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT
T ss_pred             CCCceEEEEECCC----CCEEEEEe-CCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Confidence            7889999999999    78888877 69999999999999999999999999999 999999999999999999999999


Q ss_pred             CceeeEecCcc
Q psy14456         81 RGCTNVLTPIT   91 (93)
Q Consensus        81 ~~~~~~~~~~~   91 (93)
                      +.....+..|.
T Consensus        87 ~~~~~~~~~~~   97 (814)
T 3mkq_A           87 GEKVVDFEAHP   97 (814)
T ss_dssp             CCEEEEEECCS
T ss_pred             CcEEEEEecCC
Confidence            99888887664

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.71  E-value=3.5e-16  Score=90.67  Aligned_cols=84  Identities=27%  Similarity=0.401  Sum_probs=72.3

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCC-CCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCA-TGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLR   79 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~-~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~   79 (93)
                      |+..|.+++|.+..   +..+++++ .|+.|++||++ .+..+..+.+|.+.|.++ |+|++..+++++.|+.+++||++
T Consensus       204 h~~~v~~~~~~~~~---~~~l~sgs-~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~  279 (380)
T 3iz6_a          204 HTADVLSLSINSLN---ANMFISGS-CDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMR  279 (380)
T ss_dssp             CCSCEEEEEECSSS---CCEEEEEE-TTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETT
T ss_pred             CccCeEEEEeecCC---CCEEEEEE-CCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECC
Confidence            67889999998742   56667665 69999999998 456778889999999999 99999999999999999999999


Q ss_pred             CCceeeEecC
Q psy14456         80 TRGCTNVLTP   89 (93)
Q Consensus        80 ~~~~~~~~~~   89 (93)
                      ++..+..+..
T Consensus       280 ~~~~~~~~~~  289 (380)
T 3iz6_a          280 TGHQLQVYNR  289 (380)
T ss_dssp             TTEEEEEECC
T ss_pred             CCcEEEEecc
Confidence            9988877754

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.71  E-value=1.5e-16  Score=91.66  Aligned_cols=84  Identities=18%  Similarity=0.325  Sum_probs=65.1

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCcee----EEeeccccceEEE-EecCCCEEEEecCCCcEEEE
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAF----QALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFW   76 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~----~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~   76 (93)
                      |.+.|++++|+|+    +. +++++ .|+.|++||+.+++..    ....+|.+.|.++ |+|++..+++++.|+.|++|
T Consensus        93 ~~~~V~~~~~s~d----~~-~l~~s-~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iw  166 (357)
T 4g56_B           93 TEAGVTDVAWVSE----KG-ILVAS-DSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVW  166 (357)
T ss_dssp             CSSCEEEEEEETT----TE-EEEEE-TTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEE
T ss_pred             CCCCEEEEEEcCC----CC-EEEEE-CCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEE
Confidence            5678999999998    55 45555 5999999999887643    2345789999999 99999999999999999999


Q ss_pred             eCCCCceeeEecCcc
Q psy14456         77 DLRTRGCTNVLTPIT   91 (93)
Q Consensus        77 d~~~~~~~~~~~~~~   91 (93)
                      |+++++++..+..|.
T Consensus       167 d~~~~~~~~~~~~h~  181 (357)
T 4g56_B          167 DLSQKAVLKSYNAHS  181 (357)
T ss_dssp             ETTTTEEEEEECCCS
T ss_pred             ECCCCcEEEEEcCCC
Confidence            999999998888765

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.70  E-value=8.3e-16  Score=88.51  Aligned_cols=84  Identities=32%  Similarity=0.441  Sum_probs=73.0

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      |...|.+++|+|...  +..+++++ .|+.+++||+++++++..+.+|...+.++ |+|++..+++++.|+.+++||+++
T Consensus       195 h~~~v~~~~~~~~~~--g~~l~sgs-~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~  271 (354)
T 2pbi_B          195 HGADVLCLDLAPSET--GNTFVSGG-CDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRA  271 (354)
T ss_dssp             CSSCEEEEEECCCSS--CCEEEEEE-TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             CCCCeEEEEEEeCCC--CCEEEEEe-CCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCC
Confidence            778899999988521  45677766 69999999999999999999999999999 999999999999999999999998


Q ss_pred             CceeeEec
Q psy14456         81 RGCTNVLT   88 (93)
Q Consensus        81 ~~~~~~~~   88 (93)
                      +.....+.
T Consensus       272 ~~~~~~~~  279 (354)
T 2pbi_B          272 DREVAIYS  279 (354)
T ss_dssp             TEEEEEEC
T ss_pred             CcEEEEEc
Confidence            87666554

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.70  E-value=2.8e-16  Score=90.59  Aligned_cols=81  Identities=25%  Similarity=0.385  Sum_probs=72.0

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCC-CEEEEecCCCcEEEEeCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGG-ATVLSGSHDRTVRFWDLR   79 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~-~~~~s~~~~~~i~~~d~~   79 (93)
                      |++.|.+++|+|+    ++.+++++ .|+.|++||+++++++..+.+|...+.++ |++++ ..+++++.|+.+++||++
T Consensus       138 h~~~V~~v~~spd----g~~l~sgs-~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~  212 (357)
T 4g56_B          138 HDDIVKTLSVFSD----GTQAVSGG-KDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTR  212 (357)
T ss_dssp             CSSCEEEEEECSS----SSEEEEEE-TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTT
T ss_pred             CCCCEEEEEECCC----CCEEEEEe-CCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECC
Confidence            7789999999998    78888876 69999999999999999999999999999 99976 478899999999999999


Q ss_pred             CCceeeEe
Q psy14456         80 TRGCTNVL   87 (93)
Q Consensus        80 ~~~~~~~~   87 (93)
                      +++....+
T Consensus       213 ~~~~~~~~  220 (357)
T 4g56_B          213 KPKPATRI  220 (357)
T ss_dssp             SSSCBCBC
T ss_pred             CCceeeee
Confidence            88765544

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.70  E-value=7.2e-16  Score=89.69  Aligned_cols=85  Identities=28%  Similarity=0.389  Sum_probs=72.6

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCC------------ceeEEeeccccceEEE-EecCCCEEEEec
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATG------------QAFQALSGHSGHVLSL-YNWGGATVLSGS   68 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~------------~~~~~~~~~~~~v~~~-~~~~~~~~~s~~   68 (93)
                      |...|.+++|+|+    +..+++++ .|+.|++||++..            .+...+.+|...+.++ |++++.++++++
T Consensus       255 h~~~v~~v~~~~~----g~~l~s~s-~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs  329 (393)
T 1erj_A          255 HKDSVYSVVFTRD----GQSVVSGS-LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS  329 (393)
T ss_dssp             CSSCEEEEEECTT----SSEEEEEE-TTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEE
T ss_pred             CCCCEEEEEECCC----CCEEEEEe-CCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEe
Confidence            6788999999998    77888776 6999999998753            3456778899999999 999999999999


Q ss_pred             CCCcEEEEeCCCCceeeEecCcc
Q psy14456         69 HDRTVRFWDLRTRGCTNVLTPIT   91 (93)
Q Consensus        69 ~~~~i~~~d~~~~~~~~~~~~~~   91 (93)
                      .|+.+++||.+++..+..+.+|.
T Consensus       330 ~D~~v~iwd~~~~~~~~~l~~h~  352 (393)
T 1erj_A          330 KDRGVLFWDKKSGNPLLMLQGHR  352 (393)
T ss_dssp             TTSEEEEEETTTCCEEEEEECCS
T ss_pred             CCCeEEEEECCCCeEEEEECCCC
Confidence            99999999999999988887764

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.70  E-value=2.7e-16  Score=89.95  Aligned_cols=84  Identities=21%  Similarity=0.276  Sum_probs=72.4

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCC--CCceeEEeeccccceEEE-EecC--CCEEEEecCCCcEEEE
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCA--TGQAFQALSGHSGHVLSL-YNWG--GATVLSGSHDRTVRFW   76 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~--~~~~~~~~~~~~~~v~~~-~~~~--~~~~~s~~~~~~i~~~   76 (93)
                      |++.|++++|+|+    ++++++++ .|+.|++|++.  +...+..+.+|...+.++ |+++  +..+++++.|+.+++|
T Consensus        10 h~~~v~~~~~s~~----~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iw   84 (379)
T 3jrp_A           10 HNELIHDAVLDYY----GKRLATCS-SDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW   84 (379)
T ss_dssp             CCCCEEEEEECSS----SSEEEEEE-TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEE
T ss_pred             CcccEEEEEEcCC----CCEEEEEE-CCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEE
Confidence            8899999999998    78888876 59999999997  556677888999999999 9876  8999999999999999


Q ss_pred             eCCCCc--eeeEecCc
Q psy14456         77 DLRTRG--CTNVLTPI   90 (93)
Q Consensus        77 d~~~~~--~~~~~~~~   90 (93)
                      |++++.  ....+..|
T Consensus        85 d~~~~~~~~~~~~~~~  100 (379)
T 3jrp_A           85 KEENGRWSQIAVHAVH  100 (379)
T ss_dssp             EEETTEEEEEEEECCC
T ss_pred             EcCCCceeEeeeecCC
Confidence            999886  55655544

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.69  E-value=7.9e-16  Score=92.46  Aligned_cols=84  Identities=31%  Similarity=0.487  Sum_probs=74.5

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      |...|.+++|+|+    ++.+++++ .|+.|++|+. +++++..+.+|...|.++ |+|+++++++++.|+.|++||. +
T Consensus       466 ~~~~v~~~~~spd----~~~las~~-~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~  538 (577)
T 2ymu_A          466 HSSSVRGVAFSPD----GQTIASAS-DDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-N  538 (577)
T ss_dssp             CSSCEEEEEECTT----SCEEEEEE-TTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-T
T ss_pred             CCCCEEEEEEcCC----CCEEEEEe-CCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-C
Confidence            7789999999998    78888776 6999999994 678888999999999999 9999999999999999999996 6


Q ss_pred             CceeeEecCccC
Q psy14456         81 RGCTNVLTPITV   92 (93)
Q Consensus        81 ~~~~~~~~~~~~   92 (93)
                      ++++..+.+|..
T Consensus       539 ~~~~~~~~~h~~  550 (577)
T 2ymu_A          539 GQLLQTLTGHSS  550 (577)
T ss_dssp             SCEEEEEECCSS
T ss_pred             CCEEEEEcCCCC
Confidence            788888887753

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.69  E-value=4.5e-16  Score=91.09  Aligned_cols=81  Identities=26%  Similarity=0.312  Sum_probs=67.4

Q ss_pred             ccceeEEEEEecCCCCcceEE-EeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          3 DGTVRDVCFIEDTSNKSSLLI-SGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         3 ~~~v~~~~~~~~~~~~~~~~~-~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      ...+.++.|+|+    +..++ ++|..|+.|++||..+++++..+.+|.+.|.++ |+|++..++|++.|++|++||+..
T Consensus       320 ~~~v~~~~~~~~----~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~  395 (420)
T 4gga_A          320 HSQVCSILWSPH----YKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE  395 (420)
T ss_dssp             SSCEEEEEEETT----TTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred             ccceeeeeecCC----CCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence            356888999998    45544 455569999999999999999999999999999 999999999999999999999987


Q ss_pred             CceeeEe
Q psy14456         81 RGCTNVL   87 (93)
Q Consensus        81 ~~~~~~~   87 (93)
                      ..+.+..
T Consensus       396 ~~~~~~~  402 (420)
T 4gga_A          396 LDPARRR  402 (420)
T ss_dssp             SSCC---
T ss_pred             CCccchh
Confidence            6554443

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.69  E-value=7.8e-16  Score=88.26  Aligned_cols=85  Identities=22%  Similarity=0.289  Sum_probs=70.9

Q ss_pred             Ccc-ceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeE---EeeccccceEEE-EecCCCEEEEecCCCcEEEE
Q psy14456          2 HDG-TVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQ---ALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFW   76 (93)
Q Consensus         2 h~~-~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~---~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~   76 (93)
                      |.+ .|.+++|+|+    ++++++++ .|+.|++|+...+....   ...+|...|.++ |+|++.++++++.|+.+++|
T Consensus        14 h~~~~v~~l~~sp~----g~~las~~-~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw   88 (345)
T 3fm0_A           14 HPDSRCWFLAWNPA----GTLLASCG-GDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIW   88 (345)
T ss_dssp             STTSCEEEEEECTT----SSCEEEEE-TTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             CCCCcEEEEEECCC----CCEEEEEc-CCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEE
Confidence            666 8999999999    78888877 59999999998775432   235799999999 99999999999999999999


Q ss_pred             eCCCC--ceeeEecCcc
Q psy14456         77 DLRTR--GCTNVLTPIT   91 (93)
Q Consensus        77 d~~~~--~~~~~~~~~~   91 (93)
                      |+.++  .+...+.+|.
T Consensus        89 ~~~~~~~~~~~~~~~h~  105 (345)
T 3fm0_A           89 KKNQDDFECVTTLEGHE  105 (345)
T ss_dssp             EECCC-EEEEEEECCCS
T ss_pred             EccCCCeEEEEEccCCC
Confidence            98876  3566776664

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.69  E-value=2e-16  Score=91.66  Aligned_cols=74  Identities=22%  Similarity=0.373  Sum_probs=68.9

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      |++.|++++|+|+    ++++++++ .|+.|++||..+++....+..|...+.++ |+|++..+++++.|+.+++||+.+
T Consensus        65 H~~~V~~~~~sp~----~~~l~s~s-~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~  139 (380)
T 3iz6_a           65 HSGKVYSLDWTPE----KNWIVSAS-QDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSS  139 (380)
T ss_dssp             CSSCEEEEEECTT----SSCEEEEE-TTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCC
T ss_pred             cccEEEEEEEcCC----CCEEEEEe-CCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCC
Confidence            8899999999998    78888876 69999999999999999999999999999 999999999999999999999865

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.69  E-value=9e-16  Score=87.77  Aligned_cols=85  Identities=8%  Similarity=-0.022  Sum_probs=70.9

Q ss_pred             CccceeEEEEEe--cCCCCcceEEEeeeCCCeEEEEeCCCCceeEEee-ccccceEEE-EecCCCEEEEecCCCcEEEEe
Q psy14456          2 HDGTVRDVCFIE--DTSNKSSLLISGGAGDCKIYVTDCATGQAFQALS-GHSGHVLSL-YNWGGATVLSGSHDRTVRFWD   77 (93)
Q Consensus         2 h~~~v~~~~~~~--~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~-~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d   77 (93)
                      |.+.|.+++|+|  +    ++.+++++ .|+.+++||+++++.+.... .+...+.++ |+|++.++++++.|+.|++||
T Consensus       124 ~~~~v~~~~~~~~~~----~~~l~s~s-~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd  198 (343)
T 3lrv_A          124 SANEIIYMYGHNEVN----TEYFIWAD-NRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYN  198 (343)
T ss_dssp             CSSCEEEEECCC-------CCEEEEEE-TTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEE
T ss_pred             CCCCEEEEEcCCCCC----CCEEEEEe-CCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEE
Confidence            457899999999  7    67777776 69999999999998876653 445578899 999999999999999999999


Q ss_pred             CCCCcee-eEecC-cc
Q psy14456         78 LRTRGCT-NVLTP-IT   91 (93)
Q Consensus        78 ~~~~~~~-~~~~~-~~   91 (93)
                      ++++... ..+.. |.
T Consensus       199 ~~~~~~~~~~~~~~h~  214 (343)
T 3lrv_A          199 LSSPDQASSRFPVDEE  214 (343)
T ss_dssp             SSCTTSCCEECCCCTT
T ss_pred             CCCCCCCccEEeccCC
Confidence            9998877 66765 54

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.68  E-value=1.6e-15  Score=86.37  Aligned_cols=83  Identities=25%  Similarity=0.458  Sum_probs=69.3

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCC-Ccee-EEeeccccceEEE-EecCCCEEEEecCCCcEEEEeC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCAT-GQAF-QALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDL   78 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~-~~~~-~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~   78 (93)
                      |.+.|++++|+|+..+ ++.+++++ .|+.|++|++++ +..+ ..+.+|...+.++ |++++..+++++.|+.+.+||+
T Consensus        38 h~~~v~~~~~~~~~~~-g~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~  115 (368)
T 3mmy_A           38 PDDSIGCLSFSPPTLP-GNFLIAGS-WANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDL  115 (368)
T ss_dssp             CSSCEEEEEECCTTSS-SEEEEEEE-TTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             CCCceEEEEEcCCCCC-ceEEEEEC-CCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEc
Confidence            7899999999997100 15666655 699999999987 5554 6778899999999 9999999999999999999999


Q ss_pred             CCCceeeE
Q psy14456         79 RTRGCTNV   86 (93)
Q Consensus        79 ~~~~~~~~   86 (93)
                      +++.....
T Consensus       116 ~~~~~~~~  123 (368)
T 3mmy_A          116 SSNQAIQI  123 (368)
T ss_dssp             TTTEEEEE
T ss_pred             CCCCceee
Confidence            98876654

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.68  E-value=5e-16  Score=87.62  Aligned_cols=85  Identities=20%  Similarity=0.374  Sum_probs=68.7

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCC-----------------------------------------
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATG-----------------------------------------   40 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~-----------------------------------------   40 (93)
                      |.+.|++++|+|++......+++++ .|+.|++||++.+                                         
T Consensus       213 h~~~i~~~~~~p~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (351)
T 3f3f_A          213 HKSLIRSISWAPSIGRWYQLIATGC-KDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQ  291 (351)
T ss_dssp             CCSCEEEEEECCCSSCSSEEEEEEE-TTSCEEEEEEEECC---------------------------------------C
T ss_pred             CCcceeEEEECCCCCCcceEEEEEc-CCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeec
Confidence            7789999999998310005666665 6999999998764                                         


Q ss_pred             -----ceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCCCceeeEe
Q psy14456         41 -----QAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRGCTNVL   87 (93)
Q Consensus        41 -----~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~   87 (93)
                           ..+..+.+|...+.++ |++++.++++++.|+.+++||+.++..+..+
T Consensus       292 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~  344 (351)
T 3f3f_A          292 SNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM  344 (351)
T ss_dssp             CSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred             ccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence                 4566778899999999 9999999999999999999999987654444

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.67  E-value=1.5e-15  Score=93.44  Aligned_cols=85  Identities=26%  Similarity=0.311  Sum_probs=73.2

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      |...|.+++|+|++.  ...+++++ .|+.|++||++.++....+.+|.+.+.++ |+|++.++++++.|+.|++||+++
T Consensus       516 h~~~v~~~~~~~~~~--~~~l~s~s-~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~  592 (694)
T 3dm0_A          516 HRDWVSCVRFSPNTL--QPTIVSAS-WDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAE  592 (694)
T ss_dssp             CSSCEEEEEECSCSS--SCEEEEEE-TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTT
T ss_pred             CCCcEEEEEEeCCCC--cceEEEEe-CCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Confidence            677899999999731  13556655 69999999999999999999999999999 999999999999999999999999


Q ss_pred             CceeeEecC
Q psy14456         81 RGCTNVLTP   89 (93)
Q Consensus        81 ~~~~~~~~~   89 (93)
                      +..+..+..
T Consensus       593 ~~~~~~~~~  601 (694)
T 3dm0_A          593 GKKLYSLEA  601 (694)
T ss_dssp             TEEEECCBC
T ss_pred             CceEEEecC
Confidence            887766543

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.66  E-value=2.3e-15  Score=90.69  Aligned_cols=85  Identities=11%  Similarity=0.133  Sum_probs=76.5

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeec-cccceEEE-Eec----------CCCEEEEecC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSG-HSGHVLSL-YNW----------GGATVLSGSH   69 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~-~~~~v~~~-~~~----------~~~~~~s~~~   69 (93)
                      |...|++++|+|+    ++.+++++ .|+.+++|++.+++.+..+.+ |...+.++ |+|          ++.++++++.
T Consensus       487 ~~~~v~~~~~s~~----g~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~  561 (615)
T 1pgu_A          487 LRAKPSYISISPS----ETYIAAGD-VMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSL  561 (615)
T ss_dssp             CSSCEEEEEECTT----SSEEEEEE-TTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEET
T ss_pred             ccCceEEEEECCC----CCEEEEcC-CCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcC
Confidence            6789999999998    78888876 699999999999999888887 99999999 999          9999999999


Q ss_pred             CCcEEEEeCCCC-ceeeEecCcc
Q psy14456         70 DRTVRFWDLRTR-GCTNVLTPIT   91 (93)
Q Consensus        70 ~~~i~~~d~~~~-~~~~~~~~~~   91 (93)
                      |+.+++||++++ ..+..+..|.
T Consensus       562 dg~i~iw~~~~~~~~~~~~~~h~  584 (615)
T 1pgu_A          562 DTNIFIYSVKRPMKIIKALNAHK  584 (615)
T ss_dssp             TSCEEEEESSCTTCCEEETTSST
T ss_pred             CCcEEEEECCCCceechhhhcCc
Confidence            999999999987 6777777664

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.66  E-value=4e-16  Score=91.70  Aligned_cols=85  Identities=16%  Similarity=0.196  Sum_probs=69.6

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeE---EeeccccceEEE-EecCCCEEEEecCCCcEEEEe
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQ---ALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWD   77 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~---~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d   77 (93)
                      |.+.|++++|+|+    +..++++|+.|+.|++||++......   ...+|...|.++ |+|++.++++++.|+.|++||
T Consensus       249 h~~~v~~v~~~p~----~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd  324 (435)
T 4e54_B          249 HKKKVTHVALNPC----CDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYS  324 (435)
T ss_dssp             CSSCEEEEEECTT----CSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEE
T ss_pred             ccceEEeeeecCC----CceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEE
Confidence            7889999999998    45444444479999999998765433   335789999999 999999999999999999999


Q ss_pred             CCCCceeeEecCc
Q psy14456         78 LRTRGCTNVLTPI   90 (93)
Q Consensus        78 ~~~~~~~~~~~~~   90 (93)
                      ++++.+...+..+
T Consensus       325 ~~~~~~~~~~~~~  337 (435)
T 4e54_B          325 ASQWDCPLGLIPH  337 (435)
T ss_dssp             SSSSSSEEEECCC
T ss_pred             CCCCccceEEecc
Confidence            9998877666544

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.66  E-value=5.8e-15  Score=83.58  Aligned_cols=86  Identities=24%  Similarity=0.279  Sum_probs=73.5

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      |...+.+++|++++.  ...+++++ .|+.+++||+++++.+..+.+|.+.|.++ |+|++.++++++.|+.+++||+++
T Consensus       170 ~~~~v~~~~~~~~~~--~~~~~s~~-~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~  246 (340)
T 4aow_A          170 HSEWVSCVRFSPNSS--NPIIVSCG-WDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNE  246 (340)
T ss_dssp             CSSCEEEEEECSCSS--SCEEEEEE-TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTT
T ss_pred             ccCcccceEEccCCC--CcEEEEEc-CCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEecc
Confidence            677899999988741  23445544 69999999999999999999999999999 999999999999999999999999


Q ss_pred             CceeeEecCc
Q psy14456         81 RGCTNVLTPI   90 (93)
Q Consensus        81 ~~~~~~~~~~   90 (93)
                      ...+..+..+
T Consensus       247 ~~~~~~~~~~  256 (340)
T 4aow_A          247 GKHLYTLDGG  256 (340)
T ss_dssp             TEEEEEEECS
T ss_pred             CceeeeecCC
Confidence            9888777543

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.66  E-value=4.5e-15  Score=85.66  Aligned_cols=81  Identities=32%  Similarity=0.482  Sum_probs=74.7

Q ss_pred             ccceeEEEEEecCCCCcceEEEeeeCC---CeEEEEeCCCCceeEEeec-------------cccceEEE-EecCCCEEE
Q psy14456          3 DGTVRDVCFIEDTSNKSSLLISGGAGD---CKIYVTDCATGQAFQALSG-------------HSGHVLSL-YNWGGATVL   65 (93)
Q Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~g~~~---~~v~~~~~~~~~~~~~~~~-------------~~~~v~~~-~~~~~~~~~   65 (93)
                      ...|.+++|+|+    +..+++++ .+   +.|++||+++++.+..+.+             |...+.++ |++++.+++
T Consensus       233 ~~~i~~i~~~~~----~~~l~~~~-~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  307 (397)
T 1sq9_A          233 SNSIRSVKFSPQ----GSLLAIAH-DSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLC  307 (397)
T ss_dssp             CCCEEEEEECSS----TTEEEEEE-EETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEE
T ss_pred             CCccceEEECCC----CCEEEEEe-cCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEE
Confidence            789999999998    77888776 48   9999999999999988888             99999999 999999999


Q ss_pred             EecCCCcEEEEeCCCCceeeEec
Q psy14456         66 SGSHDRTVRFWDLRTRGCTNVLT   88 (93)
Q Consensus        66 s~~~~~~i~~~d~~~~~~~~~~~   88 (93)
                      +++.|+.+.+||+++++.+..+.
T Consensus       308 ~~~~dg~i~iwd~~~~~~~~~~~  330 (397)
T 1sq9_A          308 SAGWDGKLRFWDVKTKERITTLN  330 (397)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEE
T ss_pred             EEeCCCeEEEEEcCCCceeEEEe
Confidence            99999999999999999888887

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.66  E-value=1.3e-15  Score=87.16  Aligned_cols=80  Identities=19%  Similarity=0.134  Sum_probs=68.3

Q ss_pred             ccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCcee-EEeec-cccceEEE-EecCCCEEEEecCCCcEEEEeCC
Q psy14456          3 DGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAF-QALSG-HSGHVLSL-YNWGGATVLSGSHDRTVRFWDLR   79 (93)
Q Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~-~~~~~-~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~   79 (93)
                      ...|.+++|+|+    +..+++++ .|+.|++||+++++.+ ..+.. |.+.+.++ |+|++..+++++ ++.+++||++
T Consensus       170 ~~~i~~~~~~pd----g~~lasg~-~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~  243 (343)
T 3lrv_A          170 DVEYSSGVLHKD----SLLLALYS-PDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLR  243 (343)
T ss_dssp             SCCCCEEEECTT----SCEEEEEC-TTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETT
T ss_pred             CCceEEEEECCC----CCEEEEEc-CCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcC
Confidence            457999999998    67777766 6999999999999887 77887 99999999 999999999999 4499999999


Q ss_pred             CCceeeEec
Q psy14456         80 TRGCTNVLT   88 (93)
Q Consensus        80 ~~~~~~~~~   88 (93)
                      ++.....+.
T Consensus       244 ~~~~~~~~~  252 (343)
T 3lrv_A          244 KDVGTLAYP  252 (343)
T ss_dssp             SSTTCBSSC
T ss_pred             CCCcceeec
Confidence            887654443

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.65  E-value=8.9e-15  Score=81.93  Aligned_cols=83  Identities=29%  Similarity=0.485  Sum_probs=73.7

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      |...|.+++|+|+    +. +++++ .++.+++||+++++.+..+.+|...+.++ |++++ .+++++.|+.+.+||+++
T Consensus       183 ~~~~i~~~~~~~~----~~-~~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~  255 (313)
T 3odt_A          183 HNDVVRHLAVVDD----GH-FISCS-NDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKEN  255 (313)
T ss_dssp             CSSCEEEEEEEET----TE-EEEEE-TTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTT
T ss_pred             CcccEEEEEEcCC----Ce-EEEcc-CCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCC
Confidence            6788999999998    55 66665 69999999999999999999999999999 99988 588999999999999999


Q ss_pred             CceeeEecCcc
Q psy14456         81 RGCTNVLTPIT   91 (93)
Q Consensus        81 ~~~~~~~~~~~   91 (93)
                      ++....+..+.
T Consensus       256 ~~~~~~~~~~~  266 (313)
T 3odt_A          256 GSLKQVITLPA  266 (313)
T ss_dssp             CCEEEEEECSS
T ss_pred             CceeEEEeccC
Confidence            99888887654

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.65  E-value=4.6e-15  Score=86.81  Aligned_cols=80  Identities=16%  Similarity=0.299  Sum_probs=67.9

Q ss_pred             eeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEee--ccccceEEE-EecCCCEEEEecCCCcEEEEeCCCCc
Q psy14456          6 VRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALS--GHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRG   82 (93)
Q Consensus         6 v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~--~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~   82 (93)
                      +..++|+++     + +++.|. |+.|++||..++++...+.  +|...|.++ |++++.++++|+.|+.+.+||+++++
T Consensus       108 ~~~l~wS~~-----n-~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~  180 (420)
T 4gga_A          108 LNLVDWSSG-----N-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK  180 (420)
T ss_dssp             CBCEEECTT-----S-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred             ceeEEECCC-----C-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCc
Confidence            467899864     3 556675 9999999999998876554  677789999 99999999999999999999999999


Q ss_pred             eeeEecCccC
Q psy14456         83 CTNVLTPITV   92 (93)
Q Consensus        83 ~~~~~~~~~~   92 (93)
                      .++.+..|..
T Consensus       181 ~~~~~~~h~~  190 (420)
T 4gga_A          181 RLRNMTSHSA  190 (420)
T ss_dssp             EEEEECCCSS
T ss_pred             EEEEEeCCCC
Confidence            9998887753

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.65  E-value=2.9e-15  Score=88.53  Aligned_cols=81  Identities=19%  Similarity=0.112  Sum_probs=68.2

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      |.+.|.+++|+|+.   +..+++++ .|+.|++||++++.......+|...+.++ |++++..+++++.|+.+.+||.+ 
T Consensus       148 h~~~V~~v~~~p~~---~~~las~s-~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-  222 (434)
T 2oit_A          148 AGGMVIDMKWNPTV---PSMVAVCL-ADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-  222 (434)
T ss_dssp             GGGSEEEEEECSSC---TTEEEEEE-TTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-
T ss_pred             CCCceEEEEECCCC---CCEEEEEE-CCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-
Confidence            78899999999973   45666655 69999999999887776667788999999 99999999999999999999998 


Q ss_pred             CceeeEe
Q psy14456         81 RGCTNVL   87 (93)
Q Consensus        81 ~~~~~~~   87 (93)
                      +.....+
T Consensus       223 ~~~~~~~  229 (434)
T 2oit_A          223 LQEKKVI  229 (434)
T ss_dssp             CCEEEEE
T ss_pred             Ccccccc
Confidence            5444444

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.65  E-value=4.3e-15  Score=84.64  Aligned_cols=83  Identities=31%  Similarity=0.509  Sum_probs=72.1

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-E--ecCCCEEEEecCCCcEEEEeC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-Y--NWGGATVLSGSHDRTVRFWDL   78 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~--~~~~~~~~s~~~~~~i~~~d~   78 (93)
                      |.+.|.+++|+|+    ++.+++++ .|+.|++||+++++.+. +..|...+.++ |  ++++..+++++.|+.+++||+
T Consensus        85 h~~~v~~~~~~~~----~~~l~s~~-~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~  158 (368)
T 3mmy_A           85 HTGPVLDVCWSDD----GSKVFTAS-CDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDT  158 (368)
T ss_dssp             CSSCEEEEEECTT----SSEEEEEE-TTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECS
T ss_pred             ccCCEEEEEECcC----CCEEEEEc-CCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEEC
Confidence            7889999999998    78888776 69999999999888766 55699999999 9  778889999999999999999


Q ss_pred             CCCceeeEecCc
Q psy14456         79 RTRGCTNVLTPI   90 (93)
Q Consensus        79 ~~~~~~~~~~~~   90 (93)
                      ++++.+..+..+
T Consensus       159 ~~~~~~~~~~~~  170 (368)
T 3mmy_A          159 RSSNPMMVLQLP  170 (368)
T ss_dssp             SCSSCSEEEECS
T ss_pred             CCCcEEEEEecC
Confidence            998877776543

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.65  E-value=7.2e-15  Score=84.05  Aligned_cols=85  Identities=26%  Similarity=0.263  Sum_probs=74.8

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeC------------------CCCceeEEeeccccceEEE-EecCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDC------------------ATGQAFQALSGHSGHVLSL-YNWGGA   62 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~------------------~~~~~~~~~~~~~~~v~~~-~~~~~~   62 (93)
                      |...|.+++|+|+    ++.+++++ .|+.+++||+                  ..+..+..+.+|...+.++ |++++.
T Consensus       141 ~~~~i~~~~~~~~----~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  215 (372)
T 1k8k_C          141 IRSTVLSLDWHPN----SVLLAAGS-CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGS  215 (372)
T ss_dssp             CCSCEEEEEECTT----SSEEEEEE-TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSS
T ss_pred             cCCCeeEEEEcCC----CCEEEEEc-CCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCC
Confidence            6788999999998    67777776 6999999995                  3567788888899999999 999999


Q ss_pred             EEEEecCCCcEEEEeCCCCceeeEecCcc
Q psy14456         63 TVLSGSHDRTVRFWDLRTRGCTNVLTPIT   91 (93)
Q Consensus        63 ~~~s~~~~~~i~~~d~~~~~~~~~~~~~~   91 (93)
                      .+++++.|+.+.+||+++++.+..+..+.
T Consensus       216 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~  244 (372)
T 1k8k_C          216 RVAWVSHDSTVCLADADKKMAVATLASET  244 (372)
T ss_dssp             EEEEEETTTEEEEEEGGGTTEEEEEECSS
T ss_pred             EEEEEeCCCEEEEEECCCCceeEEEccCC
Confidence            99999999999999999999888887664

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.65  E-value=2.6e-15  Score=85.91  Aligned_cols=81  Identities=12%  Similarity=0.250  Sum_probs=71.7

Q ss_pred             CCccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCc--eeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEe
Q psy14456          1 MHDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQ--AFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWD   77 (93)
Q Consensus         1 ~h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~--~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d   77 (93)
                      .|+++|.+++|+|+    ++.+++++ .++.|++|++.+++  .+..+.+|...+.++ |++++..+++++.|+.+.+||
T Consensus         6 ~~~~~i~~~~~s~~----~~~l~~~~-~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd   80 (372)
T 1k8k_C            6 FLVEPISCHAWNKD----RTQIAICP-NNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWT   80 (372)
T ss_dssp             SCSSCCCEEEECTT----SSEEEEEC-SSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred             ccCCCeEEEEECCC----CCEEEEEe-CCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEE
Confidence            47899999999998    78888776 59999999999887  788888999999999 999999999999999999999


Q ss_pred             CCCCceeeE
Q psy14456         78 LRTRGCTNV   86 (93)
Q Consensus        78 ~~~~~~~~~   86 (93)
                      +++++....
T Consensus        81 ~~~~~~~~~   89 (372)
T 1k8k_C           81 LKGRTWKPT   89 (372)
T ss_dssp             EETTEEEEE
T ss_pred             CCCCeeeee
Confidence            988764443

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.65  E-value=1.4e-16  Score=91.60  Aligned_cols=84  Identities=14%  Similarity=0.198  Sum_probs=67.1

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCC--ceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATG--QAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDL   78 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~--~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~   78 (93)
                      |.++|++++|+|+    ++++++++ .|+.|++|++.++  ..+..+.+|...+.++ |++++.++++++.|+.+++||+
T Consensus        10 ~~~~v~~~~~s~~----g~~l~~~~-~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~   84 (377)
T 3dwl_C           10 LPKPSYEHAFNSQ----RTEFVTTT-ATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEK   84 (377)
T ss_dssp             CSSCCSCCEECSS----SSEEECCC-SSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC--
T ss_pred             CCCcEEEEEECCC----CCEEEEec-CCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEc
Confidence            4678999999998    77777766 5999999999988  6777888999999999 9999999999999999999999


Q ss_pred             CCCc---eeeEecCc
Q psy14456         79 RTRG---CTNVLTPI   90 (93)
Q Consensus        79 ~~~~---~~~~~~~~   90 (93)
                      +++.   ....+..|
T Consensus        85 ~~~~~~~~~~~~~~~   99 (377)
T 3dwl_C           85 RPDGTWKQTLVLLRL   99 (377)
T ss_dssp             ----CCCCEEECCCC
T ss_pred             CCCCceeeeeEeccc
Confidence            9876   45544444

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.64  E-value=8.5e-15  Score=90.85  Aligned_cols=85  Identities=26%  Similarity=0.384  Sum_probs=76.0

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      |.++|.+++|+|+    ++.+++++ .|+.|++|+..+++.+..+.+|...+.++ |+|++..+++++.|+.+.+||+++
T Consensus        54 ~~~~v~~~~~s~~----~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~  128 (814)
T 3mkq_A           54 TETPVRAGKFIAR----KNWIIVGS-DDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN  128 (814)
T ss_dssp             CSSCEEEEEEEGG----GTEEEEEE-TTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGG
T ss_pred             CCCcEEEEEEeCC----CCEEEEEe-CCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCC
Confidence            7889999999999    78888877 59999999999999999999999999999 999999999999999999999998


Q ss_pred             C-ceeeEecCcc
Q psy14456         81 R-GCTNVLTPIT   91 (93)
Q Consensus        81 ~-~~~~~~~~~~   91 (93)
                      + .....+..|.
T Consensus       129 ~~~~~~~~~~~~  140 (814)
T 3mkq_A          129 NWALEQTFEGHE  140 (814)
T ss_dssp             TSEEEEEEECCS
T ss_pred             CceEEEEEcCCC
Confidence            7 5566665553

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.64  E-value=3.5e-15  Score=84.89  Aligned_cols=86  Identities=12%  Similarity=0.096  Sum_probs=71.6

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeC---CCeEEEEeCCCCceeEEe-eccccceEEE-EecC---CCEEEEecCCCcE
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAG---DCKIYVTDCATGQAFQAL-SGHSGHVLSL-YNWG---GATVLSGSHDRTV   73 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~---~~~v~~~~~~~~~~~~~~-~~~~~~v~~~-~~~~---~~~~~s~~~~~~i   73 (93)
                      |.+.|.+++|+|+    +..++++|+.   |+.|++|++.+++..... .+|...+.++ |+++   +..+++++.|+.+
T Consensus        17 h~~~v~~~~~~p~----~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i   92 (357)
T 3i2n_A           17 FNYTVFDCKWVPC----SAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNL   92 (357)
T ss_dssp             CSSCEEEEEECTT----SSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCE
T ss_pred             CCCceEEEEEcCC----CceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeE
Confidence            7889999999998    6666666655   899999999988765433 3788999999 9997   6999999999999


Q ss_pred             EEEeCCCCc-eeeEecCcc
Q psy14456         74 RFWDLRTRG-CTNVLTPIT   91 (93)
Q Consensus        74 ~~~d~~~~~-~~~~~~~~~   91 (93)
                      .+||++++. ....+..|.
T Consensus        93 ~iwd~~~~~~~~~~~~~~~  111 (357)
T 3i2n_A           93 HIWNLEAPEMPVYSVKGHK  111 (357)
T ss_dssp             EEECTTSCSSCSEEECCCS
T ss_pred             EEEeCCCCCccEEEEEecc
Confidence            999999887 777777664

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.63  E-value=1.6e-14  Score=83.60  Aligned_cols=83  Identities=14%  Similarity=0.295  Sum_probs=73.2

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      |.+.|++++|+|+    ++.+++++ .++.|++|+ .++..+..+..|...+.++ |++++..+++++.|+.+.+||+++
T Consensus       107 ~~~~v~~~~~s~~----~~~l~~~~-~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~  180 (425)
T 1r5m_A          107 TTNQVTCLAWSHD----GNSIVTGV-ENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVIS  180 (425)
T ss_dssp             -CBCEEEEEECTT----SSEEEEEE-TTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTT
T ss_pred             CCCceEEEEEcCC----CCEEEEEe-CCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCC
Confidence            5679999999998    78888876 599999999 6777888888999999999 999999999999999999999999


Q ss_pred             CceeeEecCc
Q psy14456         81 RGCTNVLTPI   90 (93)
Q Consensus        81 ~~~~~~~~~~   90 (93)
                      +.....+..+
T Consensus       181 ~~~~~~~~~~  190 (425)
T 1r5m_A          181 GTVMQHFELK  190 (425)
T ss_dssp             TEEEEEECCC
T ss_pred             CcEEEEeecc
Confidence            9888777654

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.63  E-value=2.5e-14  Score=80.70  Aligned_cols=85  Identities=20%  Similarity=0.291  Sum_probs=73.7

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCc--eeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQ--AFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDL   78 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~--~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~   78 (93)
                      |...|.+++|+|+    ++.+++++ .++.+++|+++.+.  ....+..|...+.++ |++++..+++++.|+.+.+||+
T Consensus        96 ~~~~v~~~~~~~~----~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~  170 (337)
T 1gxr_A           96 RDNYIRSCKLLPD----GCTLIVGG-EASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDL  170 (337)
T ss_dssp             TTSBEEEEEECTT----SSEEEEEE-SSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             CCCcEEEEEEcCC----CCEEEEEc-CCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeC
Confidence            5678999999998    77788776 59999999999876  556777899999999 9999999999999999999999


Q ss_pred             CCCceeeEecCcc
Q psy14456         79 RTRGCTNVLTPIT   91 (93)
Q Consensus        79 ~~~~~~~~~~~~~   91 (93)
                      ++++....+..|.
T Consensus       171 ~~~~~~~~~~~~~  183 (337)
T 1gxr_A          171 HNQTLVRQFQGHT  183 (337)
T ss_dssp             TTTEEEEEECCCS
T ss_pred             CCCceeeeeeccc
Confidence            9998888887654

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.63  E-value=1.2e-15  Score=87.66  Aligned_cols=84  Identities=17%  Similarity=0.169  Sum_probs=69.8

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCC------------------CCceeEEeeccccceEEE-EecCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCA------------------TGQAFQALSGHSGHVLSL-YNWGGA   62 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~------------------~~~~~~~~~~~~~~v~~~-~~~~~~   62 (93)
                      |.+.|.+++|+|+    ++.+++++ .|+.+++||++                  .+.++..+ +|...+.++ |+|++.
T Consensus       145 h~~~v~~~~~~~~----~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~  218 (377)
T 3dwl_C          145 LRSTILSLDWHPN----NVLLAAGC-ADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGN  218 (377)
T ss_dssp             CCSCEEEEEECTT----SSEEEEEE-SSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSS
T ss_pred             cCCCeEEEEEcCC----CCEEEEEe-CCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCC
Confidence            7889999999998    77777776 69999999985                  24455566 899999999 999999


Q ss_pred             EEEEecCCCcEEEEeCCCCce----eeEecCcc
Q psy14456         63 TVLSGSHDRTVRFWDLRTRGC----TNVLTPIT   91 (93)
Q Consensus        63 ~~~s~~~~~~i~~~d~~~~~~----~~~~~~~~   91 (93)
                      ++++++.|+.+++||++++..    +..+..|.
T Consensus       219 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  251 (377)
T 3dwl_C          219 ALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQ  251 (377)
T ss_dssp             CEEEEETTTEEC-CEECSTTSCEEECCCEECSS
T ss_pred             EEEEEeCCCcEEEEECCCCCCcceeeEeecCCC
Confidence            999999999999999999876    66665553

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.63  E-value=5.4e-15  Score=85.30  Aligned_cols=82  Identities=13%  Similarity=0.193  Sum_probs=69.7

Q ss_pred             CccceeEEEEEecCCCCcc-eEEEeeeCCCeEEEEeCCC----CceeEEeeccccceEEE-Eec-CCCEEEEecCCCcEE
Q psy14456          2 HDGTVRDVCFIEDTSNKSS-LLISGGAGDCKIYVTDCAT----GQAFQALSGHSGHVLSL-YNW-GGATVLSGSHDRTVR   74 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~-~~~~~g~~~~~v~~~~~~~----~~~~~~~~~~~~~v~~~-~~~-~~~~~~s~~~~~~i~   74 (93)
                      |.+.|.+++|+|+    ++ .+++++ .|+.|++||+++    +..+..+ +|...+.++ |++ ++..+++++.|+.+.
T Consensus       203 h~~~v~~~~~~~~----~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~  276 (383)
T 3ei3_B          203 HKAKVTHAEFNPR----CDWLMATSS-VDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIR  276 (383)
T ss_dssp             SSSCEEEEEECSS----CTTEEEEEE-TTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEE
T ss_pred             CCCcEEEEEECCC----CCCEEEEEe-CCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEE
Confidence            7889999999998    56 666665 699999999987    5555555 689999999 999 999999999999999


Q ss_pred             EEeCCCCceeeEecC
Q psy14456         75 FWDLRTRGCTNVLTP   89 (93)
Q Consensus        75 ~~d~~~~~~~~~~~~   89 (93)
                      +||++++.....+..
T Consensus       277 iwd~~~~~~~~~~~~  291 (383)
T 3ei3_B          277 VYSSYDWSKPDQIII  291 (383)
T ss_dssp             EEETTBTTSCSEEEE
T ss_pred             EEECCCCcccccccc
Confidence            999998877666653

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.63  E-value=2.1e-14  Score=80.45  Aligned_cols=83  Identities=22%  Similarity=0.127  Sum_probs=71.0

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      |.+.|.+++| |+    ++.+++++ .|+.|++||+.++.....+..|...+.++ |++++..+++++.|+.+.+|++..
T Consensus        17 h~~~v~~~~~-~~----~~~l~s~~-~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~   90 (313)
T 3odt_A           17 HDQDVRDVVA-VD----DSKVASVS-RDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFA   90 (313)
T ss_dssp             CSSCEEEEEE-EE----TTEEEEEE-TTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTC
T ss_pred             CCCCcEEEEe-cC----CCEEEEEE-cCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeee
Confidence            7899999999 77    67777776 69999999999998888888999999999 999999999999999999999876


Q ss_pred             C---ceeeEecCc
Q psy14456         81 R---GCTNVLTPI   90 (93)
Q Consensus        81 ~---~~~~~~~~~   90 (93)
                      .   .....+..|
T Consensus        91 ~~~~~~~~~~~~~  103 (313)
T 3odt_A           91 TSGEDPLYTLIGH  103 (313)
T ss_dssp             CTTSCC-CEECCC
T ss_pred             cCCCCcccchhhc
Confidence            4   345555444

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.63  E-value=2.1e-14  Score=83.07  Aligned_cols=86  Identities=13%  Similarity=0.263  Sum_probs=71.2

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCC----eEEEEeCCCCce----eEEeeccccceEEE-EecCCCEEEEecCCCc
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDC----KIYVTDCATGQA----FQALSGHSGHVLSL-YNWGGATVLSGSHDRT   72 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~----~v~~~~~~~~~~----~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~   72 (93)
                      |...|.+++|+|+    +..+++++. ++    .++.|+......    ...+.+|...|.++ |+|++.++++++.|+.
T Consensus       218 ~~~~v~~v~fspd----g~~l~~~s~-d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~  292 (365)
T 4h5i_A          218 KNWSLSKINFIAD----DTVLIAASL-KKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNS  292 (365)
T ss_dssp             TTEEEEEEEEEET----TEEEEEEEE-SSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSC
T ss_pred             CCCCEEEEEEcCC----CCEEEEEec-CCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCE
Confidence            6778999999999    777777664 55    688888766543    34567889999999 9999999999999999


Q ss_pred             EEEEeCCCCceeeEe-cCccC
Q psy14456         73 VRFWDLRTRGCTNVL-TPITV   92 (93)
Q Consensus        73 i~~~d~~~~~~~~~~-~~~~~   92 (93)
                      |++||++++++++.+ .+|..
T Consensus       293 V~iwd~~~~~~~~~~~~gH~~  313 (365)
T 4h5i_A          293 IALVKLKDLSMSKIFKQAHSF  313 (365)
T ss_dssp             EEEEETTTTEEEEEETTSSSS
T ss_pred             EEEEECCCCcEEEEecCcccC
Confidence            999999999998876 56754

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.63  E-value=1.5e-14  Score=93.16  Aligned_cols=86  Identities=27%  Similarity=0.418  Sum_probs=77.6

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-Eec--CCCEEEEecCCCcEEEEeC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNW--GGATVLSGSHDRTVRFWDL   78 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~--~~~~~~s~~~~~~i~~~d~   78 (93)
                      |.+.|.+++|+|+    ++++++++ .|+.|++||+.+++.+..+.+|...+.++ |++  +...+++++.|+.+.+||+
T Consensus       656 h~~~v~~~~~s~~----~~~l~s~~-~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~  730 (1249)
T 3sfz_A          656 HEDEVLCCAFSSD----DSYIATCS-ADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL  730 (1249)
T ss_dssp             CSSCEEEEEECTT----SSEEEEEE-TTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEET
T ss_pred             CCCCEEEEEEecC----CCEEEEEe-CCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEEC
Confidence            7889999999998    78888877 59999999999999999999999999999 998  5668999999999999999


Q ss_pred             CCCceeeEecCccC
Q psy14456         79 RTRGCTNVLTPITV   92 (93)
Q Consensus        79 ~~~~~~~~~~~~~~   92 (93)
                      +++.+...+.+|..
T Consensus       731 ~~~~~~~~~~~h~~  744 (1249)
T 3sfz_A          731 NQKECRNTMFGHTN  744 (1249)
T ss_dssp             TSSSEEEEECCCSS
T ss_pred             CCcchhheecCCCC
Confidence            99999888877653

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.63  E-value=1.4e-14  Score=85.46  Aligned_cols=84  Identities=23%  Similarity=0.330  Sum_probs=71.2

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEE-eeccccceEEE-EecCCCEEEEecCCCcEEEEeCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQA-LSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLR   79 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~-~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~   79 (93)
                      |.+.|.+++|+|+.. .+..+++++ .|+.|++||++++..+.. +.+|...+.++ |+ ++.++++++.|+.|++||++
T Consensus       194 h~~~v~~~~~sp~~~-~~~~l~s~~-~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~  270 (450)
T 2vdu_B          194 HVSMLTDVHLIKDSD-GHQFIITSD-RDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWK  270 (450)
T ss_dssp             CSSCEEEEEEEECTT-SCEEEEEEE-TTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETT
T ss_pred             ccCceEEEEEcCCCC-CCcEEEEEc-CCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECC
Confidence            678999999999710 034566655 699999999999988877 56899999999 99 99999999999999999999


Q ss_pred             CCceeeEec
Q psy14456         80 TRGCTNVLT   88 (93)
Q Consensus        80 ~~~~~~~~~   88 (93)
                      +++++..+.
T Consensus       271 ~~~~~~~~~  279 (450)
T 2vdu_B          271 TGKNLSTFD  279 (450)
T ss_dssp             TCCEEEEEE
T ss_pred             CCcEeeeec
Confidence            998887775

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.62  E-value=2.9e-15  Score=93.20  Aligned_cols=85  Identities=21%  Similarity=0.278  Sum_probs=73.1

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCC--CCceeEEeeccccceEEE-EecC--CCEEEEecCCCcEEEE
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCA--TGQAFQALSGHSGHVLSL-YNWG--GATVLSGSHDRTVRFW   76 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~--~~~~~~~~~~~~~~v~~~-~~~~--~~~~~s~~~~~~i~~~   76 (93)
                      |++.|++++|+|+    ++.+++++ .||.|++|++.  ++..+..+.+|.+.|.++ |+++  +..+++++.|+.+++|
T Consensus         8 H~~~V~~l~~s~d----g~~latg~-~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw   82 (753)
T 3jro_A            8 HNELIHDAVLDYY----GKRLATCS-SDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW   82 (753)
T ss_dssp             CCCCEEEECCCSS----SCCEEEEE-TTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEE
T ss_pred             CcceeEEEEECCC----CCeEEEEE-CCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEE
Confidence            8899999999998    77888877 59999999987  456677888999999999 9887  8999999999999999


Q ss_pred             eCCCCc--eeeEecCcc
Q psy14456         77 DLRTRG--CTNVLTPIT   91 (93)
Q Consensus        77 d~~~~~--~~~~~~~~~   91 (93)
                      |++++.  ....+..|.
T Consensus        83 d~~~~~~~~~~~~~~h~   99 (753)
T 3jro_A           83 KEENGRWSQIAVHAVHS   99 (753)
T ss_dssp             EEETTEEEEEEEECCCS
T ss_pred             ECCCCcccccccccCCC
Confidence            999886  555555543

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.62  E-value=1e-14  Score=85.33  Aligned_cols=84  Identities=19%  Similarity=0.337  Sum_probs=73.2

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEee-ccccceEEE-Eec----CCCEEEEecCCCcEEE
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALS-GHSGHVLSL-YNW----GGATVLSGSHDRTVRF   75 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~-~~~~~v~~~-~~~----~~~~~~s~~~~~~i~~   75 (93)
                      |.+.|++++|+|+    +..+++++ .|+.|++||++.+.++..+. .|...+.++ ++|    ++..+++++.|+.+++
T Consensus       213 h~~~v~~~~~s~~----~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~i  287 (437)
T 3gre_A          213 RHGAVSSICIDEE----CCVLILGT-TRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTI  287 (437)
T ss_dssp             GGCCEEEEEECTT----SCEEEEEE-TTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEE
T ss_pred             CCCceEEEEECCC----CCEEEEEc-CCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEE
Confidence            7789999999998    77788776 69999999999999888875 778888888 876    3668999999999999


Q ss_pred             EeCCCCceeeEecCc
Q psy14456         76 WDLRTRGCTNVLTPI   90 (93)
Q Consensus        76 ~d~~~~~~~~~~~~~   90 (93)
                      ||++++.+++.+..+
T Consensus       288 wd~~~~~~~~~~~~~  302 (437)
T 3gre_A          288 WNFVKGHCQYAFINS  302 (437)
T ss_dssp             EETTTTEEEEEEESS
T ss_pred             EEcCCCcEEEEEEcC
Confidence            999999998888765

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.62  E-value=9.3e-15  Score=83.27  Aligned_cols=79  Identities=24%  Similarity=0.471  Sum_probs=69.9

Q ss_pred             CccceeEEEEEe-cCCCCcceEEEeeeCCCeEEEEeCCCCceeEEe---eccccceEEE-EecCCCEEEEecCCCcEEEE
Q psy14456          2 HDGTVRDVCFIE-DTSNKSSLLISGGAGDCKIYVTDCATGQAFQAL---SGHSGHVLSL-YNWGGATVLSGSHDRTVRFW   76 (93)
Q Consensus         2 h~~~v~~~~~~~-~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~---~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~   76 (93)
                      |.+.|.+++|+| +    +..+++++ .|+.|++||+++++.+..+   .+|...+.++ |++++..+++++.|+.+.+|
T Consensus       114 ~~~~i~~~~~~~~~----~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~  188 (366)
T 3k26_A          114 HGNAINELKFHPRD----PNLLLSVS-KDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW  188 (366)
T ss_dssp             CCSCEEEEEECSSC----TTEEEEEE-TTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             CCCcEEEEEECCCC----CCEEEEEe-CCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEE
Confidence            788999999999 5    67777766 6999999999999888887   6899999999 99999999999999999999


Q ss_pred             eCCCCceee
Q psy14456         77 DLRTRGCTN   85 (93)
Q Consensus        77 d~~~~~~~~   85 (93)
                      |++++....
T Consensus       189 d~~~~~~~~  197 (366)
T 3k26_A          189 RINSKRMMN  197 (366)
T ss_dssp             ESCSHHHHH
T ss_pred             ECCCCcccc
Confidence            999875443

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.62  E-value=1.6e-14  Score=81.89  Aligned_cols=84  Identities=17%  Similarity=0.184  Sum_probs=73.2

Q ss_pred             CccceeEEEEEe-cCCCCcceEEEeeeCCCeEEEEeCCCC------ceeEEeecccc---------ceEEE-EecCCCEE
Q psy14456          2 HDGTVRDVCFIE-DTSNKSSLLISGGAGDCKIYVTDCATG------QAFQALSGHSG---------HVLSL-YNWGGATV   64 (93)
Q Consensus         2 h~~~v~~~~~~~-~~~~~~~~~~~~g~~~~~v~~~~~~~~------~~~~~~~~~~~---------~v~~~-~~~~~~~~   64 (93)
                      |...|.+++|+| +    ++.+++++ .++.+++|+.+..      .....+..|..         .+.++ |++++.++
T Consensus       192 ~~~~i~~i~~~~~~----~~~l~~~~-~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  266 (342)
T 1yfq_A          192 LKYQIRDVALLPKE----QEGYACSS-IDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFL  266 (342)
T ss_dssp             CSSCEEEEEECSGG----GCEEEEEE-TTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCE
T ss_pred             CCCceeEEEECCCC----CCEEEEEe-cCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEE
Confidence            567899999999 8    67777776 6999999999876      66777777755         89999 99999999


Q ss_pred             EEecCCCcEEEEeCCCCceeeEecCc
Q psy14456         65 LSGSHDRTVRFWDLRTRGCTNVLTPI   90 (93)
Q Consensus        65 ~s~~~~~~i~~~d~~~~~~~~~~~~~   90 (93)
                      ++++.|+.+.+||+++++.+..+..|
T Consensus       267 ~~~~~dg~i~vwd~~~~~~~~~~~~~  292 (342)
T 1yfq_A          267 YTAGSDGIISCWNLQTRKKIKNFAKF  292 (342)
T ss_dssp             EEEETTSCEEEEETTTTEEEEECCCC
T ss_pred             EEecCCceEEEEcCccHhHhhhhhcc
Confidence            99999999999999999988888765

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.61  E-value=3.1e-14  Score=80.37  Aligned_cols=82  Identities=23%  Similarity=0.291  Sum_probs=73.5

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      |...|.+++|+|+    ++.+++++ .++.+++||+++++.+..+..|...+.++ |++++..+++++.|+.+.+||+++
T Consensus       140 ~~~~i~~~~~~~~----~~~l~~~~-~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~  214 (337)
T 1gxr_A          140 SAPACYALAISPD----SKVCFSCC-SDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLRE  214 (337)
T ss_dssp             SSSCEEEEEECTT----SSEEEEEE-TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             CCCceEEEEECCC----CCEEEEEe-CCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCC
Confidence            5678999999998    77778776 69999999999999999999999999999 999999999999999999999999


Q ss_pred             CceeeEec
Q psy14456         81 RGCTNVLT   88 (93)
Q Consensus        81 ~~~~~~~~   88 (93)
                      +.....+.
T Consensus       215 ~~~~~~~~  222 (337)
T 1gxr_A          215 GRQLQQHD  222 (337)
T ss_dssp             TEEEEEEE
T ss_pred             CceEeeec
Confidence            88776653

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.61  E-value=3.1e-14  Score=85.80  Aligned_cols=81  Identities=12%  Similarity=0.159  Sum_probs=73.3

Q ss_pred             CccceeEEEEEecCCCCcc-eEEEeeeCCCeEEEEeCCCCceeEEeecccc---ceEEE-EecC-CCEEEEecCCCcEEE
Q psy14456          2 HDGTVRDVCFIEDTSNKSS-LLISGGAGDCKIYVTDCATGQAFQALSGHSG---HVLSL-YNWG-GATVLSGSHDRTVRF   75 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~-~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~---~v~~~-~~~~-~~~~~s~~~~~~i~~   75 (93)
                      |.+.|.+++|+|+    ++ .+++++ .|+.+++||..+++.+..+.+|..   .+.++ |+|+ +..+++++.|+.+.+
T Consensus       159 ~~~~v~~~~~~~~----~~~~l~~~~-~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v  233 (615)
T 1pgu_A          159 HSQRINACHLKQS----RPMRSMTVG-DDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISC  233 (615)
T ss_dssp             CSSCEEEEEECSS----SSCEEEEEE-TTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEE
T ss_pred             CCccEEEEEECCC----CCcEEEEEe-CCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEE
Confidence            6788999999998    55 566655 699999999999999999999998   99999 9999 999999999999999


Q ss_pred             EeCCCCceeeEe
Q psy14456         76 WDLRTRGCTNVL   87 (93)
Q Consensus        76 ~d~~~~~~~~~~   87 (93)
                      ||+++++.+..+
T Consensus       234 wd~~~~~~~~~~  245 (615)
T 1pgu_A          234 FDGKSGEFLKYI  245 (615)
T ss_dssp             EETTTCCEEEEC
T ss_pred             EECCCCCEeEEe
Confidence            999999988887

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.61  E-value=9.8e-15  Score=92.49  Aligned_cols=77  Identities=12%  Similarity=0.072  Sum_probs=66.6

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCC-----------------------------------------
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATG-----------------------------------------   40 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~-----------------------------------------   40 (93)
                      |+..|.+++|+|+    ++.+++++ .|+.|++|++.++                                         
T Consensus       487 h~~~V~svafspd----g~~LAsgs-~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  561 (902)
T 2oaj_A          487 KELAVDKISFAAE----TLELAVSI-ETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGV  561 (902)
T ss_dssp             SSCCEEEEEEETT----TTEEEEEE-TTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTC
T ss_pred             CCCceeEEEecCC----CCeEEEEe-cCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCC
Confidence            6678999999999    78877776 6999999998765                                         


Q ss_pred             ----ceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCCCcee
Q psy14456         41 ----QAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRGCT   84 (93)
Q Consensus        41 ----~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~~~   84 (93)
                          +++..+.+|.+.|.++ |+|++ ++++++.|+.|++||++++..+
T Consensus       562 ~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~  609 (902)
T 2oaj_A          562 RQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAII  609 (902)
T ss_dssp             SEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEE
T ss_pred             CCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEE
Confidence                2356778899999999 99999 9999999999999999877654

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.61  E-value=2.9e-14  Score=80.26  Aligned_cols=78  Identities=24%  Similarity=0.322  Sum_probs=64.5

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCc--eeEEeeccccceEEE-EecC--CCEEEEecCCCcEEEE
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQ--AFQALSGHSGHVLSL-YNWG--GATVLSGSHDRTVRFW   76 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~--~~~~~~~~~~~v~~~-~~~~--~~~~~s~~~~~~i~~~   76 (93)
                      |+++|.+++|+++..  ++.+++++ .|+.|++||++++.  .+..+.+|...+.++ |+|+  +..+++++.|+.+++|
T Consensus        52 H~~~V~~v~~s~~~~--g~~l~s~s-~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~w  128 (297)
T 2pm7_B           52 HEGPVWRVDWAHPKF--GTILASCS-YDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVV  128 (297)
T ss_dssp             CSSCEEEEEECCGGG--CSEEEEEE-TTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEE
T ss_pred             ccCCeEEEEecCCCc--CCEEEEEc-CCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEE
Confidence            789999999986310  45666665 69999999998774  456677899999999 9996  7899999999999999


Q ss_pred             eCCCCc
Q psy14456         77 DLRTRG   82 (93)
Q Consensus        77 d~~~~~   82 (93)
                      |++++.
T Consensus       129 d~~~~~  134 (297)
T 2pm7_B          129 EFKENG  134 (297)
T ss_dssp             EBCSSS
T ss_pred             EecCCC
Confidence            998763

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.61  E-value=2.8e-14  Score=80.90  Aligned_cols=82  Identities=16%  Similarity=0.115  Sum_probs=69.1

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCc---eeEEeeccccceEEE-EecCCC-EEEEecCCCcEEEE
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQ---AFQALSGHSGHVLSL-YNWGGA-TVLSGSHDRTVRFW   76 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~---~~~~~~~~~~~v~~~-~~~~~~-~~~s~~~~~~i~~~   76 (93)
                      |.+.|++++|+|+    +..+++++ .|+.|++|++..+.   ....+.+|...+.++ |++++. .+++++.|+.+.+|
T Consensus        10 h~~~v~~~~~s~~----~~~l~~~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~w   84 (342)
T 1yfq_A           10 PKDYISDIKIIPS----KSLLLITS-WDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV   84 (342)
T ss_dssp             CSSCEEEEEEEGG----GTEEEEEE-TTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEE
T ss_pred             CCCcEEEEEEcCC----CCEEEEEc-CCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEE
Confidence            7899999999998    78888876 59999999998776   344556899999999 999999 99999999999999


Q ss_pred             eC-CCCceeeEecC
Q psy14456         77 DL-RTRGCTNVLTP   89 (93)
Q Consensus        77 d~-~~~~~~~~~~~   89 (93)
                      |+ .++.. ..+..
T Consensus        85 d~~~~~~~-~~~~~   97 (342)
T 1yfq_A           85 DLIGSPSF-QALTN   97 (342)
T ss_dssp             CSSSSSSE-EECBS
T ss_pred             EeccCCce-Eeccc
Confidence            99 76654 44444

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.61  E-value=1.6e-14  Score=83.33  Aligned_cols=75  Identities=21%  Similarity=0.278  Sum_probs=67.7

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEee------cc---------------ccceEEE-Eec
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALS------GH---------------SGHVLSL-YNW   59 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~------~~---------------~~~v~~~-~~~   59 (93)
                      |...|.+++|+|+    ++.+++++ .|+.|++||+++++.+..+.      +|               ...+.++ |++
T Consensus       290 ~~~~v~~~~~~~~----~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~  364 (397)
T 1sq9_A          290 HSSWVMSLSFNDS----GETLCSAG-WDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLK  364 (397)
T ss_dssp             BSSCEEEEEECSS----SSEEEEEE-TTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEEC
T ss_pred             cCCcEEEEEECCC----CCEEEEEe-CCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEecc
Confidence            7889999999998    77888876 69999999999999998888      77               8999999 999


Q ss_pred             CC----------CEEEEecCCCcEEEEeCCCC
Q psy14456         60 GG----------ATVLSGSHDRTVRFWDLRTR   81 (93)
Q Consensus        60 ~~----------~~~~s~~~~~~i~~~d~~~~   81 (93)
                      ++          ..+++++.|+.+++||++++
T Consensus       365 ~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g  396 (397)
T 1sq9_A          365 KGWRSGMGADLNESLCCVCLDRSIRWFREAGG  396 (397)
T ss_dssp             TTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred             ccccccccccccceEEEecCCCcEEEEEcCCC
Confidence            98          79999999999999999876

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.61  E-value=1.3e-14  Score=83.65  Aligned_cols=82  Identities=22%  Similarity=0.336  Sum_probs=69.6

Q ss_pred             CccceeEEEEEe-cCCCCcceEEEeeeCCCeEEEEeCCCCceeEEee-------------ccccceEEE-Eec-CCCEEE
Q psy14456          2 HDGTVRDVCFIE-DTSNKSSLLISGGAGDCKIYVTDCATGQAFQALS-------------GHSGHVLSL-YNW-GGATVL   65 (93)
Q Consensus         2 h~~~v~~~~~~~-~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~-------------~~~~~v~~~-~~~-~~~~~~   65 (93)
                      |++.|++++|+| +    ++.+++++ .|+.|++|++.++.....+.             +|...+.++ |++ ++..++
T Consensus        42 h~~~v~~~~~s~~~----~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  116 (408)
T 4a11_B           42 HGGGINTLDIEPVE----GRYMLSGG-SDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFT  116 (408)
T ss_dssp             CSSCEEEEEECTTT----CCEEEEEE-TTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEE
T ss_pred             cCCcEEEEEEecCC----CCEEEEEc-CCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEE
Confidence            889999999999 7    77888877 59999999998775543332             488999999 999 788999


Q ss_pred             EecCCCcEEEEeCCCCceeeEec
Q psy14456         66 SGSHDRTVRFWDLRTRGCTNVLT   88 (93)
Q Consensus        66 s~~~~~~i~~~d~~~~~~~~~~~   88 (93)
                      +++.|+.+.+||++++.....+.
T Consensus       117 s~~~d~~i~iwd~~~~~~~~~~~  139 (408)
T 4a11_B          117 SSSFDKTLKVWDTNTLQTADVFN  139 (408)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEE
T ss_pred             EEeCCCeEEEeeCCCCccceecc
Confidence            99999999999999988776664

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.61  E-value=4e-14  Score=81.93  Aligned_cols=84  Identities=24%  Similarity=0.374  Sum_probs=75.0

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      |...|.+++|+|+    +..+++++ .++.+++||++.+..+..+..|...+.++ |++++ .+++++.|+.+.+||+++
T Consensus       246 ~~~~i~~~~~~~~----~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~  319 (425)
T 1r5m_A          246 HHGPISVLEFNDT----NKLLLSAS-DDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQ  319 (425)
T ss_dssp             CSSCEEEEEEETT----TTEEEEEE-TTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTT
T ss_pred             CCCceEEEEECCC----CCEEEEEc-CCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCC
Confidence            6788999999998    67777776 69999999999999888888899999999 99988 999999999999999999


Q ss_pred             CceeeEecCcc
Q psy14456         81 RGCTNVLTPIT   91 (93)
Q Consensus        81 ~~~~~~~~~~~   91 (93)
                      +..+..+..+.
T Consensus       320 ~~~~~~~~~~~  330 (425)
T 1r5m_A          320 NTLLALSIVDG  330 (425)
T ss_dssp             TEEEEEEECTT
T ss_pred             CcEeEecccCC
Confidence            98888776653

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.60  E-value=5e-14  Score=82.99  Aligned_cols=83  Identities=37%  Similarity=0.638  Sum_probs=70.0

Q ss_pred             Cccc-eeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCC
Q psy14456          2 HDGT-VRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLR   79 (93)
Q Consensus         2 h~~~-v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~   79 (93)
                      |.+. +.++.+  +    ++.+++++ .|+.|++||+.+++.+..+.+|.+.|.++ |++++ .+++++.|+.+++||++
T Consensus       120 h~~~v~~~~~~--~----~~~l~sgs-~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~  191 (464)
T 3v7d_B          120 HMTSVITCLQF--E----DNYVITGA-DDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIK  191 (464)
T ss_dssp             CSSSCEEEEEE--E----TTEEEEEE-TTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETT
T ss_pred             CCCCcEEEEEE--C----CCEEEEEc-CCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECC
Confidence            5555 456555  3    45677766 69999999999999999999999999999 98877 89999999999999999


Q ss_pred             CCceeeEecCccC
Q psy14456         80 TRGCTNVLTPITV   92 (93)
Q Consensus        80 ~~~~~~~~~~~~~   92 (93)
                      ++.+...+..|..
T Consensus       192 ~~~~~~~~~~h~~  204 (464)
T 3v7d_B          192 KGCCTHVFEGHNS  204 (464)
T ss_dssp             TTEEEEEECCCSS
T ss_pred             CCcEEEEECCCCC
Confidence            9999888877643

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.60  E-value=6.2e-14  Score=82.57  Aligned_cols=84  Identities=31%  Similarity=0.453  Sum_probs=72.8

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      |...|.++  +++    +..+++++ .|+.|++||+++++++..+.+|...+.++ |++++..+++++.|+.+++||+++
T Consensus       269 ~~~~v~~~--~~~----~~~l~~~~-~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~  341 (464)
T 3v7d_B          269 HMASVRTV--SGH----GNIVVSGS-YDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN  341 (464)
T ss_dssp             CSSCEEEE--EEE----TTEEEEEE-TTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT
T ss_pred             ccceEEEE--cCC----CCEEEEEe-CCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Confidence            45566665  455    56777766 69999999999999999999999999999 999999999999999999999999


Q ss_pred             CceeeEecCccC
Q psy14456         81 RGCTNVLTPITV   92 (93)
Q Consensus        81 ~~~~~~~~~~~~   92 (93)
                      ++++..+..|..
T Consensus       342 ~~~~~~~~~h~~  353 (464)
T 3v7d_B          342 GELMYTLQGHTA  353 (464)
T ss_dssp             TEEEEEECCCSS
T ss_pred             CcEEEEEeCCCC
Confidence            999999887754

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.60  E-value=3.1e-14  Score=83.64  Aligned_cols=86  Identities=27%  Similarity=0.360  Sum_probs=70.6

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCC---ceeEEeeccccceEEE-EecCCC-EEEEecCCCcEEEE
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATG---QAFQALSGHSGHVLSL-YNWGGA-TVLSGSHDRTVRFW   76 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~---~~~~~~~~~~~~v~~~-~~~~~~-~~~s~~~~~~i~~~   76 (93)
                      |.+.|.+++|+|.+   ...+++++ .++.|++||++.+   ..+..+..|...+.++ |++++. ++++++.|+.|.+|
T Consensus       230 h~~~v~~v~~~p~~---~~~l~s~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vw  305 (430)
T 2xyi_A          230 HTAVVEDVAWHLLH---ESLFGSVA-DDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW  305 (430)
T ss_dssp             CSSCEEEEEECSSC---TTEEEEEE-TTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEE
T ss_pred             CCCCEeeeEEeCCC---CCEEEEEe-CCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEE
Confidence            67889999999953   56666665 6999999999877   5667778899999999 999775 78899999999999


Q ss_pred             eCCC-CceeeEecCcc
Q psy14456         77 DLRT-RGCTNVLTPIT   91 (93)
Q Consensus        77 d~~~-~~~~~~~~~~~   91 (93)
                      |+++ +..+..+..|.
T Consensus       306 d~~~~~~~~~~~~~h~  321 (430)
T 2xyi_A          306 DLRNLKLKLHSFESHK  321 (430)
T ss_dssp             ETTCTTSCSEEEECCS
T ss_pred             eCCCCCCCeEEeecCC
Confidence            9998 45666666553

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.60  E-value=1.3e-14  Score=84.04  Aligned_cols=77  Identities=13%  Similarity=0.223  Sum_probs=69.6

Q ss_pred             CccceeEEEEEe-cCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCC-CEEEEecCCCcEEEEeC
Q psy14456          2 HDGTVRDVCFIE-DTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGG-ATVLSGSHDRTVRFWDL   78 (93)
Q Consensus         2 h~~~v~~~~~~~-~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~-~~~~s~~~~~~i~~~d~   78 (93)
                      |...|.+++|+| +    +..+++++ .|+.|++||+++++.+..+.+|...+.++ |+|++ .++++++.|+.+++||+
T Consensus       261 ~~~~v~~~~~s~~~----~~~l~s~~-~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~  335 (416)
T 2pm9_A          261 HQKGILSLDWCHQD----EHLLLSSG-RDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTL  335 (416)
T ss_dssp             CSSCEEEEEECSSC----SSCEEEEE-SSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEES
T ss_pred             ccCceeEEEeCCCC----CCeEEEEe-CCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEc
Confidence            778999999999 5    67778776 69999999999999999999999999999 99988 89999999999999999


Q ss_pred             CCCce
Q psy14456         79 RTRGC   83 (93)
Q Consensus        79 ~~~~~   83 (93)
                      .++..
T Consensus       336 ~~~~~  340 (416)
T 2pm9_A          336 QNLTN  340 (416)
T ss_dssp             CCCCC
T ss_pred             cCCCC
Confidence            87654

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.60  E-value=1.5e-14  Score=82.05  Aligned_cols=78  Identities=23%  Similarity=0.335  Sum_probs=64.8

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCc--eeEEeeccccceEEE-EecC--CCEEEEecCCCcEEEE
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQ--AFQALSGHSGHVLSL-YNWG--GATVLSGSHDRTVRFW   76 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~--~~~~~~~~~~~v~~~-~~~~--~~~~~s~~~~~~i~~~   76 (93)
                      |++.|.+++|+++..  ++.+++++ .|+.|++||++++.  ....+.+|...|.++ |+|+  +.++++++.|+.+++|
T Consensus        56 H~~~V~~v~~~~~~~--~~~l~s~s-~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lw  132 (316)
T 3bg1_A           56 HEGPVWQVAWAHPMY--GNILASCS-YDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLL  132 (316)
T ss_dssp             CSSCEEEEEECCGGG--SSCEEEEE-TTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEE
T ss_pred             CCccEEEEEeCCCCC--CCEEEEEE-CCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEE
Confidence            789999999975310  46677766 69999999998873  566778899999999 9997  7899999999999999


Q ss_pred             eCCCCc
Q psy14456         77 DLRTRG   82 (93)
Q Consensus        77 d~~~~~   82 (93)
                      |++.+.
T Consensus       133 d~~~~~  138 (316)
T 3bg1_A          133 TYTGEG  138 (316)
T ss_dssp             EECSSS
T ss_pred             ecCCCC
Confidence            998753

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.60  E-value=9.3e-15  Score=84.71  Aligned_cols=86  Identities=21%  Similarity=0.292  Sum_probs=72.9

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCC---eEEEEeCCCC-ceeEEee-ccccceEEE-Eec-CCCEEEEecCCCcEE
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDC---KIYVTDCATG-QAFQALS-GHSGHVLSL-YNW-GGATVLSGSHDRTVR   74 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~---~v~~~~~~~~-~~~~~~~-~~~~~v~~~-~~~-~~~~~~s~~~~~~i~   74 (93)
                      |...|.+++|+|++   ...+++++ .++   .|++||++++ ..+..+. +|...+.++ |+| ++.++++++.|+.++
T Consensus       213 ~~~~v~~~~~~~~~---~~~l~~~~-~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~  288 (416)
T 2pm9_A          213 IKQQLSVVEWHPKN---STRVATAT-GSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVL  288 (416)
T ss_dssp             CCCCEEEEEECSSC---TTEEEEEE-CCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEE
T ss_pred             cCCceEEEEECCCC---CCEEEEEE-CCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEE
Confidence            37889999999983   34566655 588   9999999986 5667777 899999999 999 899999999999999


Q ss_pred             EEeCCCCceeeEecCcc
Q psy14456         75 FWDLRTRGCTNVLTPIT   91 (93)
Q Consensus        75 ~~d~~~~~~~~~~~~~~   91 (93)
                      +||+++++.+..+..|.
T Consensus       289 ~wd~~~~~~~~~~~~~~  305 (416)
T 2pm9_A          289 LWNPESAEQLSQFPARG  305 (416)
T ss_dssp             EECSSSCCEEEEEECSS
T ss_pred             EeeCCCCccceeecCCC
Confidence            99999999988887664

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.60  E-value=1.8e-14  Score=84.22  Aligned_cols=83  Identities=11%  Similarity=0.202  Sum_probs=69.6

Q ss_pred             CccceeEEEEEecCCCCc-ceEEEeeeCCCeEEEEeCCCCce----eEEeecccc------------ceEEE-EecCCCE
Q psy14456          2 HDGTVRDVCFIEDTSNKS-SLLISGGAGDCKIYVTDCATGQA----FQALSGHSG------------HVLSL-YNWGGAT   63 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~~~~----~~~~~~~~~------------~v~~~-~~~~~~~   63 (93)
                      |.+.|.+++|+|+    + ..+++++ .|+.|++||++++..    ...+..|..            .+.++ |++++.+
T Consensus       225 ~~~~v~~~~~~p~----~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  299 (447)
T 3dw8_B          225 LTEVITAAEFHPN----SCNTFVYSS-SKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRY  299 (447)
T ss_dssp             CCCCEEEEEECSS----CTTEEEEEE-TTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSE
T ss_pred             cCcceEEEEECCC----CCcEEEEEe-CCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCE
Confidence            6788999999998    5 6777766 699999999998876    677777776            89999 9999999


Q ss_pred             EEEecCCCcEEEEeCCC-CceeeEecCc
Q psy14456         64 VLSGSHDRTVRFWDLRT-RGCTNVLTPI   90 (93)
Q Consensus        64 ~~s~~~~~~i~~~d~~~-~~~~~~~~~~   90 (93)
                      +++++. +.+++||+++ +.++..+..|
T Consensus       300 l~~~~~-~~v~iwd~~~~~~~~~~~~~~  326 (447)
T 3dw8_B          300 MMTRDY-LSVKVWDLNMENRPVETYQVH  326 (447)
T ss_dssp             EEEEES-SEEEEEETTCCSSCSCCEESC
T ss_pred             EEEeeC-CeEEEEeCCCCccccceeecc
Confidence            999988 9999999997 7777777655

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.59  E-value=1.4e-14  Score=84.65  Aligned_cols=84  Identities=14%  Similarity=0.247  Sum_probs=69.2

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCC-CceeE-------EeeccccceEEE-EecCC-CEEEEecCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCAT-GQAFQ-------ALSGHSGHVLSL-YNWGG-ATVLSGSHDR   71 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~-~~~~~-------~~~~~~~~v~~~-~~~~~-~~~~s~~~~~   71 (93)
                      |+..|.+++|+|+    ++.++++ . |+.|++||++. +..+.       .+.+|...+.++ |+|++ ..+++++.|+
T Consensus       176 h~~~v~~~~~~~~----~~~l~s~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg  249 (447)
T 3dw8_B          176 HTYHINSISINSD----YETYLSA-D-DLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKG  249 (447)
T ss_dssp             CSSCCCEEEECTT----SSEEEEE-C-SSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTS
T ss_pred             CCcceEEEEEcCC----CCEEEEe-C-CCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCC
Confidence            7889999999998    6777775 4 99999999984 44443       256789999999 99987 9999999999


Q ss_pred             cEEEEeCCCCce----eeEecCcc
Q psy14456         72 TVRFWDLRTRGC----TNVLTPIT   91 (93)
Q Consensus        72 ~i~~~d~~~~~~----~~~~~~~~   91 (93)
                      .+++||++++..    ...+..+.
T Consensus       250 ~i~iwd~~~~~~~~~~~~~~~~~~  273 (447)
T 3dw8_B          250 TIRLCDMRASALCDRHSKLFEEPE  273 (447)
T ss_dssp             CEEEEETTTCSSSCTTCEEECCC-
T ss_pred             eEEEEECcCCccccceeeEeccCC
Confidence            999999998876    66666553

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.59  E-value=6.7e-14  Score=80.74  Aligned_cols=80  Identities=20%  Similarity=0.233  Sum_probs=68.8

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCC-EEEEecCCCcEEEEeCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGA-TVLSGSHDRTVRFWDLR   79 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~-~~~s~~~~~~i~~~d~~   79 (93)
                      |...|.+++|+|+    +..+++++ .|+.|++||+ .+..+..+.+|...+.++ |++++. ++++++.|+.+++||++
T Consensus       162 ~~~~v~~~~~~~~----~~~l~~~~-~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~  235 (383)
T 3ei3_B          162 WDYWYCCVDVSVS----RQMLATGD-STGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLR  235 (383)
T ss_dssp             SSCCEEEEEEETT----TTEEEEEE-TTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGG
T ss_pred             CCCCeEEEEECCC----CCEEEEEC-CCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCC
Confidence            3477999999998    77777776 6999999998 577788889999999999 999888 99999999999999999


Q ss_pred             C----CceeeEe
Q psy14456         80 T----RGCTNVL   87 (93)
Q Consensus        80 ~----~~~~~~~   87 (93)
                      +    +..+..+
T Consensus       236 ~~~~~~~~~~~~  247 (383)
T 3ei3_B          236 NIKDKNSYIAEM  247 (383)
T ss_dssp             GCCSTTCEEEEE
T ss_pred             CCCcccceEEEe
Confidence            7    5555544

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.59  E-value=4.2e-14  Score=82.19  Aligned_cols=82  Identities=16%  Similarity=0.180  Sum_probs=70.7

Q ss_pred             eeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCCCcee
Q psy14456          6 VRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRGCT   84 (93)
Q Consensus         6 v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~~~   84 (93)
                      +....|+|+    ++.+++++ .|+.|++||++++.....+.+|...+.++ |+|++..+++++.|+.+++||+++++..
T Consensus       100 ~~~~~~~~~----~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~  174 (420)
T 3vl1_A          100 TAVDTAKLQ----MRRFILGT-TEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNP  174 (420)
T ss_dssp             EEEEEECSS----SCEEEEEE-TTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCC
T ss_pred             eEEEEEecC----CCEEEEEE-CCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCc
Confidence            344466777    67777766 69999999999998888888999999999 9999999999999999999999999888


Q ss_pred             eEecCccC
Q psy14456         85 NVLTPITV   92 (93)
Q Consensus        85 ~~~~~~~~   92 (93)
                      ..+..|..
T Consensus       175 ~~~~~h~~  182 (420)
T 3vl1_A          175 RTLIGHRA  182 (420)
T ss_dssp             EEEECCSS
T ss_pred             eEEcCCCC
Confidence            88877653

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.58  E-value=8.7e-14  Score=81.43  Aligned_cols=81  Identities=17%  Similarity=0.255  Sum_probs=68.4

Q ss_pred             ccceeEEEEE--ecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeec--cccceEEE-EecCCCEEEEecCCCcEEEEe
Q psy14456          3 DGTVRDVCFI--EDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSG--HSGHVLSL-YNWGGATVLSGSHDRTVRFWD   77 (93)
Q Consensus         3 ~~~v~~~~~~--~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~--~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d   77 (93)
                      ...+.++.+.  ++    +..+++++ .|+.|++||+++++.+..+.+  |...+.++ |++++..+++++.|+.+++||
T Consensus       168 ~~~~~~~~~~~~~~----~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd  242 (437)
T 3gre_A          168 NEYAVRMRAFVNEE----KSLLVALT-NLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWD  242 (437)
T ss_dssp             CCCEEEEEEEECSS----CEEEEEEE-TTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred             ccCceEEEEEEcCC----CCEEEEEe-CCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEE
Confidence            3456666643  44    56667766 699999999999999998887  88999999 999999999999999999999


Q ss_pred             CCCCceeeEec
Q psy14456         78 LRTRGCTNVLT   88 (93)
Q Consensus        78 ~~~~~~~~~~~   88 (93)
                      ++++.++..+.
T Consensus       243 ~~~~~~~~~~~  253 (437)
T 3gre_A          243 IRFNVLIRSWS  253 (437)
T ss_dssp             TTTTEEEEEEB
T ss_pred             cCCccEEEEEe
Confidence            99998888764

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.58  E-value=4.8e-14  Score=82.85  Aligned_cols=74  Identities=20%  Similarity=0.387  Sum_probs=63.7

Q ss_pred             CccceeEEEEEecCCCCcc-eEEEeeeCCCeEEEEeCCC-CceeEEeeccccceEEE-EecCC-CEEEEecCCCcEEEEe
Q psy14456          2 HDGTVRDVCFIEDTSNKSS-LLISGGAGDCKIYVTDCAT-GQAFQALSGHSGHVLSL-YNWGG-ATVLSGSHDRTVRFWD   77 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~-~~~~~g~~~~~v~~~~~~~-~~~~~~~~~~~~~v~~~-~~~~~-~~~~s~~~~~~i~~~d   77 (93)
                      |.+.|.+++|+|+    +. .+++++ .|+.|++||++. ...+..+..|...+.++ |+|++ .++++++.|+.|.+||
T Consensus       276 ~~~~v~~i~~~p~----~~~~l~tg~-~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd  350 (430)
T 2xyi_A          276 HTAEVNCLSFNPY----SEFILATGS-ADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD  350 (430)
T ss_dssp             CSSCEEEEEECSS----CTTEEEEEE-TTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEE
T ss_pred             CCCCeEEEEeCCC----CCCEEEEEe-CCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEe
Confidence            6788999999998    55 455555 699999999987 56678888899999999 99977 5789999999999999


Q ss_pred             CCC
Q psy14456         78 LRT   80 (93)
Q Consensus        78 ~~~   80 (93)
                      ++.
T Consensus       351 ~~~  353 (430)
T 2xyi_A          351 LSK  353 (430)
T ss_dssp             GGG
T ss_pred             CCC
Confidence            987

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.58  E-value=2.1e-13  Score=79.39  Aligned_cols=83  Identities=27%  Similarity=0.366  Sum_probs=71.8

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCC-CCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCA-TGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLR   79 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~-~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~   79 (93)
                      |.+.|.+++|.      ++.+++++ .|+.|++||++ ....+..+.+|...+.++ |++++..+++++.|+.+++||++
T Consensus       175 ~~~~v~~~~~~------~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~  247 (401)
T 4aez_A          175 HQARVGCLSWN------RHVLSSGS-RSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDAR  247 (401)
T ss_dssp             CSSCEEEEEEE------TTEEEEEE-TTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             CCCceEEEEEC------CCEEEEEc-CCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCC
Confidence            77899999994      45666665 69999999998 456677888999999999 99999999999999999999999


Q ss_pred             CCceeeEecCcc
Q psy14456         80 TRGCTNVLTPIT   91 (93)
Q Consensus        80 ~~~~~~~~~~~~   91 (93)
                      ++.....+..+.
T Consensus       248 ~~~~~~~~~~~~  259 (401)
T 4aez_A          248 SSIPKFTKTNHN  259 (401)
T ss_dssp             CSSEEEEECCCS
T ss_pred             CCCccEEecCCc
Confidence            998888877654

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.57  E-value=5.6e-14  Score=81.05  Aligned_cols=81  Identities=23%  Similarity=0.351  Sum_probs=63.9

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCC-----------------------------------------
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATG-----------------------------------------   40 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~-----------------------------------------   40 (93)
                      |.+.|.+++|+|+    +..+++++ .|+.+++||+.++                                         
T Consensus       244 ~~~~v~~~~~~~~----~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v  318 (408)
T 4a11_B          244 HNGKVNGLCFTSD----GLHLLTVG-TDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAV  318 (408)
T ss_dssp             CSSCEEEEEECTT----SSEEEEEE-TTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEE
T ss_pred             ccCceeEEEEcCC----CCEEEEec-CCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEE
Confidence            6788999999998    77888776 5999999997653                                         


Q ss_pred             ------ceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCCCceeeEe
Q psy14456         41 ------QAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRGCTNVL   87 (93)
Q Consensus        41 ------~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~   87 (93)
                            ..+..+.+|...+.++ |++++.++++++.|+.+++||+++++.+...
T Consensus       319 ~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~  372 (408)
T 4a11_B          319 YTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDD  372 (408)
T ss_dssp             EETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-------
T ss_pred             EECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCC
Confidence                  3455667899999999 9999999999999999999999988765544

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.57  E-value=6.2e-15  Score=88.97  Aligned_cols=85  Identities=11%  Similarity=0.068  Sum_probs=69.5

Q ss_pred             CccceeEE--EEEecCCCCc-ceEEEeeeCCCeEEEEeCCCCceeEEeecccc--ceEEE-EecCCCEEEEecCCCcEEE
Q psy14456          2 HDGTVRDV--CFIEDTSNKS-SLLISGGAGDCKIYVTDCATGQAFQALSGHSG--HVLSL-YNWGGATVLSGSHDRTVRF   75 (93)
Q Consensus         2 h~~~v~~~--~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~--~v~~~-~~~~~~~~~s~~~~~~i~~   75 (93)
                      |++.|.++  .|+|+    + ..+++++ .|+++++||++++++...+.+|..  .+.++ |+|++..+++++.|+.+++
T Consensus       307 H~~~V~sv~~~~s~~----g~~~laS~S-~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~l  381 (524)
T 2j04_B          307 HDSYILSVSTAYSDF----EDTVVSTVA-VDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRA  381 (524)
T ss_dssp             SSSCEEEEEEECCTT----SCCEEEEEE-TTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEE
T ss_pred             ccccEEEEEEEcCCC----CCeEEEEec-cCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEE
Confidence            78899999  45665    4 5666665 699999999998887777766653  46788 9999999999999999999


Q ss_pred             EeCCCCceeeEecCcc
Q psy14456         76 WDLRTRGCTNVLTPIT   91 (93)
Q Consensus        76 ~d~~~~~~~~~~~~~~   91 (93)
                      ||++++.++..+.+|.
T Consensus       382 wd~~~~~~~~~l~gH~  397 (524)
T 2j04_B          382 VPSRAAFAVHPLVSRE  397 (524)
T ss_dssp             EETTCTTCCEEEEECS
T ss_pred             EECcccccceeeecCC
Confidence            9999998877777664

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.57  E-value=6.7e-14  Score=88.74  Aligned_cols=80  Identities=9%  Similarity=0.129  Sum_probs=67.1

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeecc------------------ccceEEE-EecCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGH------------------SGHVLSL-YNWGGA   62 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~------------------~~~v~~~-~~~~~~   62 (93)
                      |.++|.+++|+|++   ...++++ +.|+.+ +||+++++++..+..|                  ...|.++ |+|++.
T Consensus       150 h~~~V~sl~~sp~~---~~~l~~g-~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~  224 (902)
T 2oaj_A          150 RLSPIVSIQWNPRD---IGTVLIS-YEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSL  224 (902)
T ss_dssp             CCCCCCEEEEETTE---EEEEEEE-CSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSS
T ss_pred             CCCCeEEEEEccCC---CCEEEEE-eCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCC
Confidence            67899999999962   3455554 469999 9999999888777655                  4679999 999999


Q ss_pred             EEEEecCCCcEEEEeCCCCceeeE
Q psy14456         63 TVLSGSHDRTVRFWDLRTRGCTNV   86 (93)
Q Consensus        63 ~~~s~~~~~~i~~~d~~~~~~~~~   86 (93)
                      .+++++.|+.+++||+++++++..
T Consensus       225 ~lasgs~Dg~i~lWd~~~g~~~~~  248 (902)
T 2oaj_A          225 HIITIHEDNSLVFWDANSGHMIMA  248 (902)
T ss_dssp             EEEEEETTCCEEEEETTTCCEEEE
T ss_pred             EEEEEECCCeEEEEECCCCcEEEE
Confidence            999999999999999999877653

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.57  E-value=3.1e-14  Score=80.96  Aligned_cols=76  Identities=20%  Similarity=0.240  Sum_probs=63.0

Q ss_pred             CccceeEEEEEecCCCCcc-eEEEeeeCCCeEEEEeCCCC-------------------ceeEEeeccccceEEE-EecC
Q psy14456          2 HDGTVRDVCFIEDTSNKSS-LLISGGAGDCKIYVTDCATG-------------------QAFQALSGHSGHVLSL-YNWG   60 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~-~~~~~g~~~~~v~~~~~~~~-------------------~~~~~~~~~~~~v~~~-~~~~   60 (93)
                      |...|.+++|+|+    +. .+++++ .|+.+++||++.+                   ..+..+.+|...+.++ |+++
T Consensus       258 ~~~~v~~~~~~~~----~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  332 (357)
T 3i2n_A          258 HKSTVWQVRHLPQ----NRELFLTAG-GAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPD  332 (357)
T ss_dssp             CSSCEEEEEEETT----EEEEEEEEE-TTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSS
T ss_pred             CcCCEEEEEECCC----CCcEEEEEe-CCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCC
Confidence            7789999999998    66 566655 6999999998743                   3566778899999999 9999


Q ss_pred             CCEEE-EecCCCcEEEEeCCCCc
Q psy14456         61 GATVL-SGSHDRTVRFWDLRTRG   82 (93)
Q Consensus        61 ~~~~~-s~~~~~~i~~~d~~~~~   82 (93)
                      +..++ +++.|+.+++||+.+..
T Consensus       333 ~~~l~~s~~~d~~i~iw~~~~~~  355 (357)
T 3i2n_A          333 KRGLCVCSSFDQTVRVLIVTKLN  355 (357)
T ss_dssp             STTEEEEEETTSEEEEEEECC--
T ss_pred             CCeEEEEecCCCcEEEEECCCcc
Confidence            98887 89999999999998754

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.56  E-value=1.9e-13  Score=77.88  Aligned_cols=79  Identities=14%  Similarity=0.143  Sum_probs=71.1

Q ss_pred             ceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCC-CceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCCCc
Q psy14456          5 TVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCAT-GQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRG   82 (93)
Q Consensus         5 ~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~-~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~   82 (93)
                      .+.+++|+|+    ++.+++++ .++.|++||+++ ...+..+..|...+.++ |++++..+++++.|+.+.+||++++.
T Consensus       177 ~~~~~~~~~~----~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~  251 (369)
T 3zwl_B          177 AATVAGWSTK----GKYIIAGH-KDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQ  251 (369)
T ss_dssp             CEEEEEECGG----GCEEEEEE-TTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred             ceeEEEEcCC----CCEEEEEc-CCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCc
Confidence            8999999998    77777766 699999999998 67788888899999999 99999999999999999999999988


Q ss_pred             eeeEec
Q psy14456         83 CTNVLT   88 (93)
Q Consensus        83 ~~~~~~   88 (93)
                      ....+.
T Consensus       252 ~~~~~~  257 (369)
T 3zwl_B          252 VLKKYE  257 (369)
T ss_dssp             EEEEEE
T ss_pred             eeeeec
Confidence            877764

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.56  E-value=1.8e-13  Score=79.67  Aligned_cols=83  Identities=22%  Similarity=0.316  Sum_probs=71.3

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      |.+.|.+++|+|+    ++.+++++ .|+.+++||+.+++.+..+.+|...+.++ |  ++..+++++.|+.+.+||++.
T Consensus       133 ~~~~v~~v~~s~~----~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~  205 (401)
T 4aez_A          133 ESTYVASVKWSHD----GSFLSVGL-GNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRI  205 (401)
T ss_dssp             TTCCEEEEEECTT----SSEEEEEE-TTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTS
T ss_pred             CCCCEEEEEECCC----CCEEEEEC-CCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEeccc
Confidence            6788999999998    77777776 59999999999999999999999999999 8  567999999999999999994


Q ss_pred             -CceeeEecCcc
Q psy14456         81 -RGCTNVLTPIT   91 (93)
Q Consensus        81 -~~~~~~~~~~~   91 (93)
                       +.....+..|.
T Consensus       206 ~~~~~~~~~~~~  217 (401)
T 4aez_A          206 ANHQIGTLQGHS  217 (401)
T ss_dssp             SSCEEEEEECCS
T ss_pred             CcceeeEEcCCC
Confidence             55566665553

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.55  E-value=1.3e-13  Score=78.93  Aligned_cols=78  Identities=24%  Similarity=0.320  Sum_probs=66.2

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCc--eeEEeeccccceEEE-EecC--CCEEEEecCCCcEEEE
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQ--AFQALSGHSGHVLSL-YNWG--GATVLSGSHDRTVRFW   76 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~--~~~~~~~~~~~v~~~-~~~~--~~~~~s~~~~~~i~~~   76 (93)
                      |.+.|.+++|+++..  +..+++++ .|+.|++||++++.  .+..+..|...+.++ |+++  +..+++++.|+.+.+|
T Consensus        54 h~~~v~~~~~~~~~~--~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~  130 (379)
T 3jrp_A           54 HEGPVWRVDWAHPKF--GTILASCS-YDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVV  130 (379)
T ss_dssp             CSSCEEEEEECCGGG--CSEEEEEE-TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEE
T ss_pred             CCCcEEEEEeCCCCC--CCEEEEec-cCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEE
Confidence            788999999986521  35666665 69999999999886  667778899999999 9998  8999999999999999


Q ss_pred             eCCCCc
Q psy14456         77 DLRTRG   82 (93)
Q Consensus        77 d~~~~~   82 (93)
                      |++++.
T Consensus       131 d~~~~~  136 (379)
T 3jrp_A          131 EFKENG  136 (379)
T ss_dssp             ECCTTS
T ss_pred             ecCCCC
Confidence            999874

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.55  E-value=2.5e-14  Score=86.36  Aligned_cols=82  Identities=12%  Similarity=0.047  Sum_probs=65.5

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCc-eeEEeeccccceEEE-E--ecCC-CEEEEecCCCcEEEE
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQ-AFQALSGHSGHVLSL-Y--NWGG-ATVLSGSHDRTVRFW   76 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~-~~~~~~~~~~~v~~~-~--~~~~-~~~~s~~~~~~i~~~   76 (93)
                      |++.|++++|+++    . .+++++ .|+.|++||++++. ....+.+|...|.++ +  ++++ .++++++.|+++++|
T Consensus       265 h~~~v~sv~~s~~----~-~lasgs-~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklW  338 (524)
T 2j04_B          265 ADSLITTFDFLSP----T-TVVCGF-KNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIF  338 (524)
T ss_dssp             TTTCEEEEEESSS----S-EEEEEE-TTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEE
T ss_pred             CCCCEEEEEecCC----C-eEEEEe-CCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEE
Confidence            6788999999975    3 566655 69999999998764 455678999999987 3  5566 899999999999999


Q ss_pred             eCCCCceeeEecC
Q psy14456         77 DLRTRGCTNVLTP   89 (93)
Q Consensus        77 d~~~~~~~~~~~~   89 (93)
                      |++++++...+.+
T Consensus       339 D~~~~~~~~~~~~  351 (524)
T 2j04_B          339 NPKDIATTKTTVS  351 (524)
T ss_dssp             CGGGHHHHCEEEE
T ss_pred             ECCCCCccccccc
Confidence            9998776555443

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.55  E-value=2e-13  Score=80.17  Aligned_cols=81  Identities=33%  Similarity=0.476  Sum_probs=69.9

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      |...|.++.+  +    ++.+++++ .|+.|++||..+++....+.+|.+.+.++ |  ++..+++++.|+.+++||+++
T Consensus       132 ~~~~v~~~~~--d----~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~  202 (435)
T 1p22_A          132 TSKGVYCLQY--D----DQKIVSGL-RDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNT  202 (435)
T ss_dssp             SCCCEEEEEC--C----SSEEEEEE-SSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSS
T ss_pred             CCCcEEEEEE--C----CCEEEEEe-CCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCC
Confidence            3456888876  4    56777766 69999999999999999999999999998 6  788999999999999999999


Q ss_pred             CceeeEecCcc
Q psy14456         81 RGCTNVLTPIT   91 (93)
Q Consensus        81 ~~~~~~~~~~~   91 (93)
                      ++....+..|.
T Consensus       203 ~~~~~~~~~h~  213 (435)
T 1p22_A          203 GEMLNTLIHHC  213 (435)
T ss_dssp             CCEEEEECCCC
T ss_pred             CcEEEEEcCCC
Confidence            99988887664

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.54  E-value=2.2e-13  Score=78.71  Aligned_cols=83  Identities=16%  Similarity=0.046  Sum_probs=61.1

Q ss_pred             CccceeEEEEEe-cCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccc---cceEEE-EecCCCEE------------
Q psy14456          2 HDGTVRDVCFIE-DTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHS---GHVLSL-YNWGGATV------------   64 (93)
Q Consensus         2 h~~~v~~~~~~~-~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~---~~v~~~-~~~~~~~~------------   64 (93)
                      |+..++.++|+| ++  .+..+++++ .|++|++||+++++++..+.+|.   ..+.++ |+|++..+            
T Consensus       177 ~~~~v~~l~fs~~~g--~~~~LaSgS-~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~l  253 (356)
T 2w18_A          177 MPPEETILTFAEVQG--MQEALLGTT-IMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESE  253 (356)
T ss_dssp             CCCSSCEEEEEEEET--STTEEEEEE-TTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC--------
T ss_pred             CCCceeeEEeeccCC--CCceEEEec-CCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCccee
Confidence            555667777777 21  145666655 69999999999999999997653   356677 99998876            


Q ss_pred             EEecCCCcEEEEeCCCCceeeEe
Q psy14456         65 LSGSHDRTVRFWDLRTRGCTNVL   87 (93)
Q Consensus        65 ~s~~~~~~i~~~d~~~~~~~~~~   87 (93)
                      ++++.|+++++||..++.++..+
T Consensus       254 aSGs~D~tIklWd~~tgk~l~v~  276 (356)
T 2w18_A          254 SLRSPVFQLIVINPKTTLSVGVM  276 (356)
T ss_dssp             ----CCEEEEEEETTTTEEEEEE
T ss_pred             eccCCCcEEEEEECCCCEEEEEE
Confidence            56788999999999999876654

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.54  E-value=1.1e-13  Score=81.59  Aligned_cols=85  Identities=9%  Similarity=0.084  Sum_probs=71.5

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeE----EeeccccceEEE-EecC---CCEEEEecCCCcE
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQ----ALSGHSGHVLSL-YNWG---GATVLSGSHDRTV   73 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~----~~~~~~~~v~~~-~~~~---~~~~~s~~~~~~i   73 (93)
                      |...|.+++|+|+    +..+++++ .++.+.+|++..+....    .+.+|...+.++ |+|+   +.++++++.|+.|
T Consensus       148 ~~~~v~~~~~sp~----~~~l~~~~-~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i  222 (450)
T 2vdu_B          148 FSKRPNAISIAED----DTTVIIAD-KFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHI  222 (450)
T ss_dssp             CSSCEEEEEECTT----SSEEEEEE-TTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCE
T ss_pred             CCCCceEEEEcCC----CCEEEEEe-CCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcE
Confidence            4578999999998    77777776 69999999998776443    677899999999 9999   8899999999999


Q ss_pred             EEEeCCCCceeeEe-cCcc
Q psy14456         74 RFWDLRTRGCTNVL-TPIT   91 (93)
Q Consensus        74 ~~~d~~~~~~~~~~-~~~~   91 (93)
                      ++||++++..+..+ .+|.
T Consensus       223 ~vwd~~~~~~~~~~~~~h~  241 (450)
T 2vdu_B          223 KISHYPQCFIVDKWLFGHK  241 (450)
T ss_dssp             EEEEESCTTCEEEECCCCS
T ss_pred             EEEECCCCceeeeeecCCC
Confidence            99999998877764 3443

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.53  E-value=5.6e-13  Score=78.29  Aligned_cols=82  Identities=34%  Similarity=0.560  Sum_probs=71.8

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      |.+.|.+++|  +    ++.+++++ .|+.+++||+++++.+..+.+|...+.++ +  ++..+++++.|+.+++||+++
T Consensus       255 ~~~~v~~~~~--~----~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~  325 (435)
T 1p22_A          255 HRAAVNVVDF--D----DKYIVSAS-GDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIEC  325 (435)
T ss_dssp             CSSCEEEEEE--E----TTEEEEEE-TTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTT
T ss_pred             CCCcEEEEEe--C----CCEEEEEe-CCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCC
Confidence            6778999998  3    56777766 69999999999999999999999999998 7  578999999999999999999


Q ss_pred             CceeeEecCccC
Q psy14456         81 RGCTNVLTPITV   92 (93)
Q Consensus        81 ~~~~~~~~~~~~   92 (93)
                      +.++..+..|..
T Consensus       326 ~~~~~~~~~h~~  337 (435)
T 1p22_A          326 GACLRVLEGHEE  337 (435)
T ss_dssp             CCEEEEECCCSS
T ss_pred             CCEEEEEeCCcC
Confidence            999998887653

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.53  E-value=1.4e-13  Score=83.76  Aligned_cols=73  Identities=12%  Similarity=0.124  Sum_probs=62.2

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeecccc-----ceEEE-EecCCCEEEEecCCCcEEE
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSG-----HVLSL-YNWGGATVLSGSHDRTVRF   75 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~-----~v~~~-~~~~~~~~~s~~~~~~i~~   75 (93)
                      |...|.+++|+|+    +..+++++ .||.+++|+.+.  ++..+. |..     .+.++ |+|+++.+++++.|+.+++
T Consensus        84 ~~~~V~~vawSPd----G~~LAs~s-~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkI  155 (588)
T 2j04_A           84 PVCYPRVCKPSPI----DDWMAVLS-NNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQF  155 (588)
T ss_dssp             CSCCEEEEEECSS----SSCEEEEE-TTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEE
T ss_pred             CCCcEEEEEECCC----CCEEEEEe-CCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEE
Confidence            4578999999999    78888877 599999999544  566666 554     48899 9999999999999999999


Q ss_pred             EeCCCCc
Q psy14456         76 WDLRTRG   82 (93)
Q Consensus        76 ~d~~~~~   82 (93)
                      ||+.++.
T Consensus       156 Wd~~~~~  162 (588)
T 2j04_A          156 FSIRKNS  162 (588)
T ss_dssp             EECCCCT
T ss_pred             EECCCCc
Confidence            9999875

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.53  E-value=3.9e-14  Score=83.74  Aligned_cols=83  Identities=14%  Similarity=0.101  Sum_probs=65.8

Q ss_pred             ccceeEEEEEecCCCCcceEEE---eeeCCCeEEEEeCCCC--------ce---eEEeeccccceEEE-EecC-CCEEEE
Q psy14456          3 DGTVRDVCFIEDTSNKSSLLIS---GGAGDCKIYVTDCATG--------QA---FQALSGHSGHVLSL-YNWG-GATVLS   66 (93)
Q Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~---~g~~~~~v~~~~~~~~--------~~---~~~~~~~~~~v~~~-~~~~-~~~~~s   66 (93)
                      .+.|.+++|+|+    +++++.   +|+.|+.|++||++++        +.   +..+.+|...+.++ |+|+ +.++++
T Consensus        92 ~~~v~~l~~spd----g~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las  167 (434)
T 2oit_A           92 KFPIHHLALSCD----NLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAV  167 (434)
T ss_dssp             SSCEEEEEECTT----SCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEE
T ss_pred             CCcccEEEEcCC----CCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEE
Confidence            456999999999    677773   4446999999998654        22   34556789999999 9997 889999


Q ss_pred             ecCCCcEEEEeCCCCceeeEecC
Q psy14456         67 GSHDRTVRFWDLRTRGCTNVLTP   89 (93)
Q Consensus        67 ~~~~~~i~~~d~~~~~~~~~~~~   89 (93)
                      ++.|+.+++||++++........
T Consensus       168 ~s~Dg~v~iwD~~~~~~~~~~~~  190 (434)
T 2oit_A          168 CLADGSIAVLQVTETVKVCATLP  190 (434)
T ss_dssp             EETTSCEEEEEESSSEEEEEEEC
T ss_pred             EECCCeEEEEEcCCCcceeeccC
Confidence            99999999999998866544433

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.52  E-value=1.4e-13  Score=79.45  Aligned_cols=56  Identities=16%  Similarity=0.153  Sum_probs=48.1

Q ss_pred             EEeeeCCCeEEEEeCCCCceeEEeeccccceE-EE-EecCCCEEEEecCCCcEEEEeC
Q psy14456         23 ISGGAGDCKIYVTDCATGQAFQALSGHSGHVL-SL-YNWGGATVLSGSHDRTVRFWDL   78 (93)
Q Consensus        23 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~-~~-~~~~~~~~~s~~~~~~i~~~d~   78 (93)
                      +++|+.|++|++||+.+++++..+.+|...+. .+ |+|+++++++|+.|++|++||+
T Consensus       298 lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          298 AAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             EEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             EEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            45555799999999999999999998887655 57 9999999999999999999996

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.52  E-value=7.6e-13  Score=77.80  Aligned_cols=82  Identities=32%  Similarity=0.502  Sum_probs=68.6

Q ss_pred             Cccce-eEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCC
Q psy14456          2 HDGTV-RDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLR   79 (93)
Q Consensus         2 h~~~v-~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~   79 (93)
                      |.+.| .++  +++    ++.+++++ .|+.|++||+.+++.+..+.+|...+.++ |+  +..+++++.|+.+++||+.
T Consensus       117 h~~~v~~~~--~~~----g~~l~sg~-~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~  187 (445)
T 2ovr_B          117 HDDHVITCL--QFC----GNRIVSGS-DDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAE  187 (445)
T ss_dssp             STTSCEEEE--EEE----TTEEEEEE-TTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETT
T ss_pred             cCCCcEEEE--EEc----CCEEEEEE-CCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECC
Confidence            55654 554  445    56777766 69999999999999999999999999999 86  6799999999999999999


Q ss_pred             CCceeeEecCccC
Q psy14456         80 TRGCTNVLTPITV   92 (93)
Q Consensus        80 ~~~~~~~~~~~~~   92 (93)
                      +++....+..|..
T Consensus       188 ~~~~~~~~~~h~~  200 (445)
T 2ovr_B          188 TGECIHTLYGHTS  200 (445)
T ss_dssp             TTEEEEEECCCSS
T ss_pred             cCcEEEEECCCCC
Confidence            9998888877653

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.52  E-value=3.2e-14  Score=82.90  Aligned_cols=70  Identities=17%  Similarity=0.196  Sum_probs=56.3

Q ss_pred             EEEeeeCCCeEEEEeCCCCcee-----EEeeccccceEEE-Eec--------CCCEEEEecCCCcEEEEeCCCCceeeEe
Q psy14456         22 LISGGAGDCKIYVTDCATGQAF-----QALSGHSGHVLSL-YNW--------GGATVLSGSHDRTVRFWDLRTRGCTNVL   87 (93)
Q Consensus        22 ~~~~g~~~~~v~~~~~~~~~~~-----~~~~~~~~~v~~~-~~~--------~~~~~~s~~~~~~i~~~d~~~~~~~~~~   87 (93)
                      ++++++.|++|++||.+.+...     ..+.+|.+.|.++ |+|        ++++|++++.|+++++||++++.+...+
T Consensus       103 ~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~  182 (393)
T 4gq1_A          103 FLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAG  182 (393)
T ss_dssp             EEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEE
T ss_pred             EEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeee
Confidence            3444557999999999887543     3457899999999 987        6789999999999999999988776666


Q ss_pred             cCcc
Q psy14456         88 TPIT   91 (93)
Q Consensus        88 ~~~~   91 (93)
                      ..+.
T Consensus       183 ~~~~  186 (393)
T 4gq1_A          183 YPLS  186 (393)
T ss_dssp             EECS
T ss_pred             cCCC
Confidence            5543

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.51  E-value=4.4e-13  Score=81.57  Aligned_cols=73  Identities=10%  Similarity=0.078  Sum_probs=62.5

Q ss_pred             cceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCce-------eEEe----eccccceEEE-EecCCCEEEEecCCC
Q psy14456          4 GTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQA-------FQAL----SGHSGHVLSL-YNWGGATVLSGSHDR   71 (93)
Q Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~-------~~~~----~~~~~~v~~~-~~~~~~~~~s~~~~~   71 (93)
                      ..|.+++|+|+    ++.+++++ +||.|++|++..+..       +..+    .+|.+.|.++ |+|++  +++++.|+
T Consensus       130 ~sv~svafSPD----G~~LAsgs-~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~  202 (588)
T 2j04_A          130 RTYHCFEWNPI----ESSIVVGN-EDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNN  202 (588)
T ss_dssp             TCEEEEEECSS----SSCEEEEE-TTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTC
T ss_pred             ccEEEEEEcCC----CCEEEEEc-CCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCC
Confidence            35999999999    78888877 699999999998752       5665    5677899999 99998  77888999


Q ss_pred             cEEEEeCCCCce
Q psy14456         72 TVRFWDLRTRGC   83 (93)
Q Consensus        72 ~i~~~d~~~~~~   83 (93)
                      .+++||+..+..
T Consensus       203 tVrlWd~~~~~~  214 (588)
T 2j04_A          203 SVFSMTVSASSH  214 (588)
T ss_dssp             CEEEECCCSSSS
T ss_pred             eEEEEECCCCcc
Confidence            999999988763

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.50  E-value=1.3e-12  Score=76.87  Aligned_cols=81  Identities=33%  Similarity=0.569  Sum_probs=69.6

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      |.+.|.+++|++      +.+++++ .|+.|++||+.+++.+..+.+|...+.++ ++  +..+++++.|+.+.+||+++
T Consensus       158 h~~~v~~~~~~~------~~l~s~~-~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~  228 (445)
T 2ovr_B          158 HTGGVWSSQMRD------NIIISGS-TDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIET  228 (445)
T ss_dssp             CSSCEEEEEEET------TEEEEEE-TTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSS
T ss_pred             CCCCEEEEEecC------CEEEEEe-CCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCC
Confidence            788899999973      4666666 69999999999999999999999999998 74  67899999999999999999


Q ss_pred             CceeeEecCcc
Q psy14456         81 RGCTNVLTPIT   91 (93)
Q Consensus        81 ~~~~~~~~~~~   91 (93)
                      ++.+..+..|.
T Consensus       229 ~~~~~~~~~~~  239 (445)
T 2ovr_B          229 GQCLHVLMGHV  239 (445)
T ss_dssp             CCEEEEEECCS
T ss_pred             CcEEEEEcCCc
Confidence            98888887664

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.48  E-value=7.7e-13  Score=76.21  Aligned_cols=67  Identities=15%  Similarity=0.133  Sum_probs=57.2

Q ss_pred             EEEe-eeCCCeEEEEeCCCCc----------------eeEEeeccccceEEE-EecCCCEEEEecCCCc-EEEEeCCCCc
Q psy14456         22 LISG-GAGDCKIYVTDCATGQ----------------AFQALSGHSGHVLSL-YNWGGATVLSGSHDRT-VRFWDLRTRG   82 (93)
Q Consensus        22 ~~~~-g~~~~~v~~~~~~~~~----------------~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~-i~~~d~~~~~   82 (93)
                      ++.+ |..++.|++||++++.                .+..+.+|.+.|.++ |+|++.++++++.|+. +++||+++++
T Consensus       150 la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~  229 (355)
T 3vu4_A          150 LVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGV  229 (355)
T ss_dssp             EEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCC
T ss_pred             EEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCc
Confidence            4443 5579999999998765                267788999999999 9999999999999998 9999999999


Q ss_pred             eeeEec
Q psy14456         83 CTNVLT   88 (93)
Q Consensus        83 ~~~~~~   88 (93)
                      ++..+.
T Consensus       230 ~~~~~~  235 (355)
T 3vu4_A          230 LVREFR  235 (355)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            998887

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.47  E-value=1.1e-12  Score=81.82  Aligned_cols=77  Identities=23%  Similarity=0.296  Sum_probs=66.4

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCc--eeEEeeccccceEEE-EecC--CCEEEEecCCCcEEEE
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQ--AFQALSGHSGHVLSL-YNWG--GATVLSGSHDRTVRFW   76 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~--~~~~~~~~~~~v~~~-~~~~--~~~~~s~~~~~~i~~~   76 (93)
                      |++.|.+++|+|+..  ++.+++++ .||.|++||+.++.  ....+.+|...+.++ |+|+  +..+++++.|+.+++|
T Consensus        52 h~~~V~~l~~s~~~~--~~~l~s~s-~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vw  128 (753)
T 3jro_A           52 HEGPVWRVDWAHPKF--GTILASCS-YDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVV  128 (753)
T ss_dssp             CSSCEEEEEECCTTS--CSEEEEEE-TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEE
T ss_pred             CcCceEEEEecCCCC--CCEEEEEe-CCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEE
Confidence            788999999987621  35666666 69999999999886  567778899999999 9998  9999999999999999


Q ss_pred             eCCCC
Q psy14456         77 DLRTR   81 (93)
Q Consensus        77 d~~~~   81 (93)
                      |++++
T Consensus       129 dl~~~  133 (753)
T 3jro_A          129 EFKEN  133 (753)
T ss_dssp             ECCSS
T ss_pred             EeecC
Confidence            99987

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.39  E-value=1.6e-11  Score=71.73  Aligned_cols=83  Identities=17%  Similarity=0.021  Sum_probs=69.7

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEE-EecCCCcEEEEeCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVL-SGSHDRTVRFWDLR   79 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~-s~~~~~~i~~~d~~   79 (93)
                      |.+.|.+++|+|+    +..+++++ .++.+++||+++++.+..+..|...+.++ |++++..++ ++..++.+.+||++
T Consensus       168 ~~~~v~~~~~~~~----~~~~~s~~-~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~  242 (433)
T 3bws_A          168 KLGFVETISIPEH----NELWVSQM-QANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRK  242 (433)
T ss_dssp             TCCEEEEEEEGGG----TEEEEEEG-GGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             cCCceeEEEEcCC----CEEEEEEC-CCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECC
Confidence            5678999999887    66666665 69999999999999888888888899999 999988774 56689999999999


Q ss_pred             CCceeeEecC
Q psy14456         80 TRGCTNVLTP   89 (93)
Q Consensus        80 ~~~~~~~~~~   89 (93)
                      ++.....+..
T Consensus       243 ~~~~~~~~~~  252 (433)
T 3bws_A          243 TKLEIRKTDK  252 (433)
T ss_dssp             TTEEEEECCC
T ss_pred             CCcEEEEecC
Confidence            9887766644

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.36  E-value=3.7e-11  Score=69.35  Aligned_cols=82  Identities=12%  Similarity=0.119  Sum_probs=66.0

Q ss_pred             cceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEE-EecCCCcEEEEeCCCC
Q psy14456          4 GTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVL-SGSHDRTVRFWDLRTR   81 (93)
Q Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~-s~~~~~~i~~~d~~~~   81 (93)
                      ..+.+++|+|+    ++.++.++..++.|++||+.+++.+..+..+. .+.++ |++++..++ ++..++.+.+||+.++
T Consensus        32 ~~~~~~~~s~d----g~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~  106 (391)
T 1l0q_A           32 SNPMGAVISPD----GTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSN  106 (391)
T ss_dssp             SSEEEEEECTT----SSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             CCcceEEECCC----CCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCC
Confidence            45889999998    67665555469999999999999888776554 78889 999988764 5667799999999999


Q ss_pred             ceeeEecCc
Q psy14456         82 GCTNVLTPI   90 (93)
Q Consensus        82 ~~~~~~~~~   90 (93)
                      +....+..+
T Consensus       107 ~~~~~~~~~  115 (391)
T 1l0q_A          107 TVAGTVKTG  115 (391)
T ss_dssp             EEEEEEECS
T ss_pred             eEEEEEeCC
Confidence            887766543

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.33  E-value=1e-10  Score=67.57  Aligned_cols=83  Identities=12%  Similarity=0.043  Sum_probs=67.4

Q ss_pred             ccceeEEEEEecCCCCcceEEEeee--CCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEE-EEecCCCcEEEEeC
Q psy14456          3 DGTVRDVCFIEDTSNKSSLLISGGA--GDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATV-LSGSHDRTVRFWDL   78 (93)
Q Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~g~--~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~-~s~~~~~~i~~~d~   78 (93)
                      ...+.+++|+|+    ++.+++++.  .++.+.+||+.+++.+..+..+.. +..+ |++++..+ ++++.|+.+.+||+
T Consensus       199 ~~~~~~~~~~~~----g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~s~~~d~~v~v~d~  273 (391)
T 1l0q_A          199 EAAPSGIAVNPE----GTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPD-PAGIAVTPDGKKVYVALSFXNTVSVIDT  273 (391)
T ss_dssp             SSEEEEEEECTT----SSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSS-EEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             CCCccceEECCC----CCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCC-ccEEEEccCCCEEEEEcCCCCEEEEEEC
Confidence            456889999998    677777663  489999999999988887776554 5778 99998876 67789999999999


Q ss_pred             CCCceeeEecCc
Q psy14456         79 RTRGCTNVLTPI   90 (93)
Q Consensus        79 ~~~~~~~~~~~~   90 (93)
                      .+++.+..+..+
T Consensus       274 ~~~~~~~~~~~~  285 (391)
T 1l0q_A          274 ATNTITATMAVG  285 (391)
T ss_dssp             TTTEEEEEEECS
T ss_pred             CCCcEEEEEECC
Confidence            999888777544

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.26  E-value=3.8e-11  Score=70.11  Aligned_cols=81  Identities=21%  Similarity=0.229  Sum_probs=66.5

Q ss_pred             ceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeE-----EeeccccceEEE-EecCCCEEEEecCCCcEEEEeC
Q psy14456          5 TVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQ-----ALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDL   78 (93)
Q Consensus         5 ~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~-----~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~   78 (93)
                      .+.+++|+|+    +..+++++ .++.|++||..+++...     .+.+|...+.++ |++++.++++++.|+.+.+||+
T Consensus       124 ~~~~~~~s~~----~~~~~~~~-~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~  198 (433)
T 3bws_A          124 QPKSVRFIDN----TRLAIPLL-EDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDL  198 (433)
T ss_dssp             CBCCCEESSS----SEEEEEBT-TSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEET
T ss_pred             CceEEEEeCC----CeEEEEeC-CCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEEC
Confidence            4568889885    56666655 68999999999988776     345788899999 9999999999999999999999


Q ss_pred             CCCceeeEecCc
Q psy14456         79 RTRGCTNVLTPI   90 (93)
Q Consensus        79 ~~~~~~~~~~~~   90 (93)
                      ++++....+..+
T Consensus       199 ~~~~~~~~~~~~  210 (433)
T 3bws_A          199 KTLAYKATVDLT  210 (433)
T ss_dssp             TTCCEEEEEECS
T ss_pred             CCceEEEEEcCC
Confidence            998887777543

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.21  E-value=8.7e-10  Score=64.84  Aligned_cols=76  Identities=13%  Similarity=0.113  Sum_probs=60.9

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCC---CeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEE-EecCCC--cEE
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGD---CKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVL-SGSHDR--TVR   74 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~---~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~-s~~~~~--~i~   74 (93)
                      |.+.+.+++|+|+    ++.++.++. +   ..|++||+.+++.. .+..+...+.++ |+|++..++ +++.++  .|.
T Consensus       177 ~~~~v~~~~~Spd----g~~la~~s~-~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~  250 (415)
T 2hqs_A          177 SPQPLMSPAWSPD----GSKLAYVTF-ESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLY  250 (415)
T ss_dssp             ESSCEEEEEECTT----SSEEEEEEC-TTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEE
T ss_pred             CCCcceeeEEcCC----CCEEEEEEe-cCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEE
Confidence            5678999999999    777777663 5   49999999988765 466677888899 999999777 666554  499


Q ss_pred             EEeCCCCce
Q psy14456         75 FWDLRTRGC   83 (93)
Q Consensus        75 ~~d~~~~~~   83 (93)
                      +||+++++.
T Consensus       251 ~~d~~~~~~  259 (415)
T 2hqs_A          251 VMDLASGQI  259 (415)
T ss_dssp             EEETTTCCE
T ss_pred             EEECCCCCE
Confidence            999988765

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.05  E-value=2.5e-09  Score=68.85  Aligned_cols=81  Identities=12%  Similarity=0.134  Sum_probs=66.0

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCC----------
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHD----------   70 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~----------   70 (93)
                      |...+..++|+|+    ++.++.++ .++.+++||+.+++......+|...+..+ |+|+++.++.++.+          
T Consensus       377 ~~~~~~~~~~SpD----G~~la~~~-~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~  451 (1045)
T 1k32_A          377 NLGNVFAMGVDRN----GKFAVVAN-DRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVM  451 (1045)
T ss_dssp             CCCSEEEEEECTT----SSEEEEEE-TTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCE
T ss_pred             CccceeeeEECCC----CCEEEEEC-CCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCC
Confidence            4567899999999    78888776 58999999999998877776888888888 99999988877654          


Q ss_pred             CcEEEEeCCCCceeeEec
Q psy14456         71 RTVRFWDLRTRGCTNVLT   88 (93)
Q Consensus        71 ~~i~~~d~~~~~~~~~~~   88 (93)
                      ..+.+||+.++. ...+.
T Consensus       452 ~~i~l~d~~~g~-~~~l~  468 (1045)
T 1k32_A          452 QAIHVYDMEGRK-IFAAT  468 (1045)
T ss_dssp             EEEEEEETTTTE-EEECS
T ss_pred             CeEEEEECCCCc-EEEee
Confidence            489999998876 44443

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.03  E-value=9.4e-09  Score=57.99  Aligned_cols=77  Identities=10%  Similarity=-0.012  Sum_probs=62.0

Q ss_pred             ceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCCCce
Q psy14456          5 TVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRGC   83 (93)
Q Consensus         5 ~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~~   83 (93)
                      .+..++|+|+    ++.++++   ++.|.+||+.+++.+..+... ..+..+ |++++..+++++.++.+.+||+.+++.
T Consensus       242 ~~~~~~~s~d----g~~l~~~---~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~  313 (337)
T 1pby_B          242 FYFSTAVNPA----KTRAFGA---YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEK  313 (337)
T ss_dssp             CEEEEEECTT----SSEEEEE---ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCE
T ss_pred             ceeeEEECCC----CCEEEEe---CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcE
Confidence            4567899998    6776665   689999999998877766533 445678 999999888888899999999999988


Q ss_pred             eeEecC
Q psy14456         84 TNVLTP   89 (93)
Q Consensus        84 ~~~~~~   89 (93)
                      +..+..
T Consensus       314 ~~~~~~  319 (337)
T 1pby_B          314 KGQVDL  319 (337)
T ss_dssp             EEEEEC
T ss_pred             EEEEEc
Confidence            877754

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.02  E-value=1.2e-08  Score=60.11  Aligned_cols=77  Identities=16%  Similarity=0.078  Sum_probs=58.6

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCC--eEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecC-CC--cEEE
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDC--KIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSH-DR--TVRF   75 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~--~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~-~~--~i~~   75 (93)
                      |.+.+.+++|+|+    ++.++.+++.++  .|.+||+.+++. ..+..|...+..+ |+|+++.++.++. ++  .+.+
T Consensus       221 ~~~~~~~~~~spd----g~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~  295 (415)
T 2hqs_A          221 FPRHNGAPAFSPD----GSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYK  295 (415)
T ss_dssp             CSSCEEEEEECTT----SSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEE
T ss_pred             CCCcccCEEEcCC----CCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEE
Confidence            4567899999999    677774443454  499999988775 5566788888899 9999998887664 44  6777


Q ss_pred             EeCCCCce
Q psy14456         76 WDLRTRGC   83 (93)
Q Consensus        76 ~d~~~~~~   83 (93)
                      ||+.++..
T Consensus       296 ~d~~~~~~  303 (415)
T 2hqs_A          296 VNINGGAP  303 (415)
T ss_dssp             EETTSSCC
T ss_pred             EECCCCCE
Confidence            89887754

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.00  E-value=1.5e-08  Score=61.65  Aligned_cols=78  Identities=13%  Similarity=0.075  Sum_probs=65.2

Q ss_pred             eeEEEEEecCCCCcceEEEeeeCCCeEEEEeC--CCCceeEEeeccccceEEE-Eec----CCCEEEEec-CCCcEEEEe
Q psy14456          6 VRDVCFIEDTSNKSSLLISGGAGDCKIYVTDC--ATGQAFQALSGHSGHVLSL-YNW----GGATVLSGS-HDRTVRFWD   77 (93)
Q Consensus         6 v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~~~~~~~~~~~~~v~~~-~~~----~~~~~~s~~-~~~~i~~~d   77 (93)
                      +..++|+|+    ++++++++ .++.|.+||+  .+++++..+.. ......+ |+|    +++++++++ .++.+.+||
T Consensus       181 ~~~v~~spd----g~~l~v~~-~d~~V~v~D~~~~t~~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D  254 (543)
T 1nir_A          181 VHISRMSAS----GRYLLVIG-RDARIDMIDLWAKEPTKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMD  254 (543)
T ss_dssp             EEEEEECTT----SCEEEEEE-TTSEEEEEETTSSSCEEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEE
T ss_pred             cceEEECCC----CCEEEEEC-CCCeEEEEECcCCCCcEEEEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEe
Confidence            778899999    78888876 5899999999  78888887764 4456788 999    999998887 589999999


Q ss_pred             CCCCceeeEecC
Q psy14456         78 LRTRGCTNVLTP   89 (93)
Q Consensus        78 ~~~~~~~~~~~~   89 (93)
                      ..++++++.+..
T Consensus       255 ~~t~~~~~~i~~  266 (543)
T 1nir_A          255 GETLEPKQIVST  266 (543)
T ss_dssp             TTTCCEEEEEEC
T ss_pred             ccccccceeecc
Confidence            999988877753

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=98.98  E-value=1.8e-08  Score=56.99  Aligned_cols=81  Identities=6%  Similarity=0.007  Sum_probs=61.7

Q ss_pred             cceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCce-eEEeeccccceEEE-EecCCCEEEEecCCC---cEEEEeC
Q psy14456          4 GTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQA-FQALSGHSGHVLSL-YNWGGATVLSGSHDR---TVRFWDL   78 (93)
Q Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~-~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~---~i~~~d~   78 (93)
                      ..+ .++|+|+    ++.+++++..++.|.+||..++.. ...+..+.....++ |++++..+++...++   .+.+||+
T Consensus        41 ~~~-~~~~s~d----g~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~  115 (331)
T 3u4y_A           41 DFV-DTAITSD----CSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSF  115 (331)
T ss_dssp             CEE-EEEECSS----SCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEET
T ss_pred             Ccc-eEEEcCC----CCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEEC
Confidence            445 8999998    666666654588999999999887 66666565555547 999999888555553   8999999


Q ss_pred             CCCceeeEecC
Q psy14456         79 RTRGCTNVLTP   89 (93)
Q Consensus        79 ~~~~~~~~~~~   89 (93)
                      .+++.+..+..
T Consensus       116 ~~~~~~~~~~~  126 (331)
T 3u4y_A          116 LKNKFISTIPI  126 (331)
T ss_dssp             TTTEEEEEEEC
T ss_pred             CCCCeEEEEEC
Confidence            99887776654

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=98.98  E-value=6e-09  Score=57.57  Aligned_cols=78  Identities=12%  Similarity=0.085  Sum_probs=60.8

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCC-CCceeEEeeccccceEEE-EecCCCEEEEecCC---------
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCA-TGQAFQALSGHSGHVLSL-YNWGGATVLSGSHD---------   70 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~-~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~---------   70 (93)
                      |...+.+++|+|+    ++.++.++..++.+.+|+++ .+.....+..+...+..+ |+|++..++.++.+         
T Consensus       171 ~~~~~~~~~~s~d----g~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~  246 (297)
T 2ojh_A          171 GEGRNDGPDYSPD----GRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRD  246 (297)
T ss_dssp             SSSCEEEEEECTT----SSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSS
T ss_pred             CCCccccceECCC----CCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCccccc
Confidence            4467899999998    67676665458899999876 455566777777788888 99999988877654         


Q ss_pred             --CcEEEEeCCCCce
Q psy14456         71 --RTVRFWDLRTRGC   83 (93)
Q Consensus        71 --~~i~~~d~~~~~~   83 (93)
                        ..+.+||+.+++.
T Consensus       247 ~~~~l~~~d~~~~~~  261 (297)
T 2ojh_A          247 LDVRVQLMDMDGGNV  261 (297)
T ss_dssp             EEEEEEEEETTSCSC
T ss_pred             CceEEEEEecCCCCc
Confidence              5699999988765

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=98.89  E-value=2e-08  Score=61.11  Aligned_cols=73  Identities=11%  Similarity=0.058  Sum_probs=58.5

Q ss_pred             EEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeC--CCCceeeEe
Q psy14456         11 FIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDL--RTRGCTNVL   87 (93)
Q Consensus        11 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~--~~~~~~~~~   87 (93)
                      ++|+    +..+++. ..++.|.+||..+++++..+..... +..+ |+|+++.+++++.|+.|.+||+  .+++++..+
T Consensus       145 ~~p~----~~~~vs~-~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i  218 (543)
T 1nir_A          145 LDLP----NLFSVTL-RDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEI  218 (543)
T ss_dssp             CCGG----GEEEEEE-GGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEE
T ss_pred             cCCC----CEEEEEE-cCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEE
Confidence            5665    5555554 4699999999999999888873333 6788 9999999999999999999999  788777766


Q ss_pred             cC
Q psy14456         88 TP   89 (93)
Q Consensus        88 ~~   89 (93)
                      ..
T Consensus       219 ~~  220 (543)
T 1nir_A          219 KI  220 (543)
T ss_dssp             EC
T ss_pred             ec
Confidence            53

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=98.88  E-value=6.1e-08  Score=55.29  Aligned_cols=76  Identities=13%  Similarity=0.142  Sum_probs=54.9

Q ss_pred             ceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCC---ceeEEeeccccceEEE-EecCCCEEEEec-CCCcEEEE--e
Q psy14456          5 TVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATG---QAFQALSGHSGHVLSL-YNWGGATVLSGS-HDRTVRFW--D   77 (93)
Q Consensus         5 ~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~---~~~~~~~~~~~~v~~~-~~~~~~~~~s~~-~~~~i~~~--d   77 (93)
                      .+..++|+|+    ++.++.++..++.|.+|++...   ..+..+..+...+..+ |+|+++.+++++ .++.+.+|  |
T Consensus       241 ~~~~i~~spd----G~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d  316 (347)
T 3hfq_A          241 GAAAIRLSHD----GHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD  316 (347)
T ss_dssp             EEEEEEECTT----SCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             cceeEEECCC----CCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence            4778999999    6766555546899999998732   3444555555567788 999999877666 45899999  5


Q ss_pred             CCCCcee
Q psy14456         78 LRTRGCT   84 (93)
Q Consensus        78 ~~~~~~~   84 (93)
                      ..+++..
T Consensus       317 ~~tg~l~  323 (347)
T 3hfq_A          317 LTSGKLS  323 (347)
T ss_dssp             TTTCCEE
T ss_pred             CCCCeEE
Confidence            5566543

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=98.88  E-value=4.3e-08  Score=59.59  Aligned_cols=76  Identities=13%  Similarity=0.038  Sum_probs=61.0

Q ss_pred             eEEEEEecCCCCcceEEEeeeCC----CeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCC--cEEEEeCC
Q psy14456          7 RDVCFIEDTSNKSSLLISGGAGD----CKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDR--TVRFWDLR   79 (93)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~g~~~----~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~--~i~~~d~~   79 (93)
                      ..++|+|+    ++.++.++. +    ..|.+||+.+++.. .+..+...+... |+|+++.+++...++  .|.+||+.
T Consensus       153 ~~~~~spD----G~~la~~~~-~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~  226 (582)
T 3o4h_A          153 FGFVSDIR----GDLIAGLGF-FGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPR  226 (582)
T ss_dssp             CEEEEEEE----TTEEEEEEE-EETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTT
T ss_pred             ceEEECCC----CCEEEEEEE-cCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCC
Confidence            57889999    788886653 4    67999999888754 567788888888 999999999877888  89999999


Q ss_pred             CCceeeEecC
Q psy14456         80 TRGCTNVLTP   89 (93)
Q Consensus        80 ~~~~~~~~~~   89 (93)
                      +++.. .+..
T Consensus       227 ~~~~~-~~~~  235 (582)
T 3o4h_A          227 DGSVE-DLEL  235 (582)
T ss_dssp             TCCEE-ECCC
T ss_pred             CCcEE-EccC
Confidence            88766 4443

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=98.88  E-value=7.3e-08  Score=54.78  Aligned_cols=79  Identities=13%  Similarity=0.115  Sum_probs=63.3

Q ss_pred             eeEEEEEecCCCCcceEEEee-eCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCCCce
Q psy14456          6 VRDVCFIEDTSNKSSLLISGG-AGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRGC   83 (93)
Q Consensus         6 v~~~~~~~~~~~~~~~~~~~g-~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~~   83 (93)
                      +.++.|+|+    ++.++.++ ..++.|.+||..+++.+..+..+...+..+ |++++..++.++.++.+.+||..+++.
T Consensus       143 ~~~~~~s~d----g~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~  218 (353)
T 3vgz_A          143 PRELVADDA----TNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKI  218 (353)
T ss_dssp             EEEEEEETT----TTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEE
T ss_pred             CceEEECCC----CCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeE
Confidence            678999998    56555544 348899999999998888776455556777 999999998888899999999999887


Q ss_pred             eeEec
Q psy14456         84 TNVLT   88 (93)
Q Consensus        84 ~~~~~   88 (93)
                      ...+.
T Consensus       219 ~~~~~  223 (353)
T 3vgz_A          219 LSRKK  223 (353)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            76654

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=98.87  E-value=5.6e-08  Score=55.10  Aligned_cols=76  Identities=8%  Similarity=-0.008  Sum_probs=59.8

Q ss_pred             ceeEEEEEe-cCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCCCc
Q psy14456          5 TVRDVCFIE-DTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRG   82 (93)
Q Consensus         5 ~v~~~~~~~-~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~   82 (93)
                      .+..++|+| +    ++.++++   ++.|.+||+.+++.+..+.. ...+..+ |++++..+++++.++.+.+||..+++
T Consensus       256 ~~~~~~~sp~d----g~~l~~~---~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~  327 (349)
T 1jmx_B          256 LYFTGLRSPKD----PNQIYGV---LNRLAKYDLKQRKLIKAANL-DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLE  327 (349)
T ss_dssp             CEEEEEECSSC----TTEEEEE---ESEEEEEETTTTEEEEEEEC-SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTE
T ss_pred             cceeeEecCCC----CCEEEEE---cCeEEEEECccCeEEEEEcC-CCCccceEECCCCCEEEEecCCCeEEEEeccccc
Confidence            466788888 7    6666665   68999999999888776653 2345678 99998877777888999999999988


Q ss_pred             eeeEec
Q psy14456         83 CTNVLT   88 (93)
Q Consensus        83 ~~~~~~   88 (93)
                      .+..+.
T Consensus       328 ~~~~~~  333 (349)
T 1jmx_B          328 KVKNIK  333 (349)
T ss_dssp             EEEEEE
T ss_pred             eeeeee
Confidence            877764

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=98.85  E-value=3.1e-08  Score=56.00  Aligned_cols=73  Identities=18%  Similarity=0.194  Sum_probs=53.0

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCC--CCce--eEEeeccccceEEE-EecCCCEEEEec-CCCcEEE
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCA--TGQA--FQALSGHSGHVLSL-YNWGGATVLSGS-HDRTVRF   75 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~--~~~~--~~~~~~~~~~v~~~-~~~~~~~~~s~~-~~~~i~~   75 (93)
                      |...+.+++|+|+    ++.+++++..++.+.+|+++  ++..  +..+..+. .+..+ |++++..++.++ .++.+.+
T Consensus        36 ~~~~~~~~~~spd----g~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~  110 (343)
T 1ri6_A           36 VPGQVQPMVVSPD----KRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSV  110 (343)
T ss_dssp             CSSCCCCEEECTT----SSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEE
T ss_pred             cCCCCceEEECCC----CCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEE
Confidence            3456788999998    67777776434999999987  5543  33444333 66778 999998776554 5889999


Q ss_pred             EeCC
Q psy14456         76 WDLR   79 (93)
Q Consensus        76 ~d~~   79 (93)
                      ||+.
T Consensus       111 ~d~~  114 (343)
T 1ri6_A          111 TRLE  114 (343)
T ss_dssp             EEEE
T ss_pred             EECC
Confidence            9994

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=98.84  E-value=1.7e-07  Score=53.30  Aligned_cols=80  Identities=9%  Similarity=0.151  Sum_probs=60.1

Q ss_pred             cceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEE-EEecCCCcEEEEeCCCC
Q psy14456          4 GTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATV-LSGSHDRTVRFWDLRTR   81 (93)
Q Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~-~s~~~~~~i~~~d~~~~   81 (93)
                      ..+..++|+|+    ++.++.++..++.+.+||..+++.+..+.....  ..+ |++++..+ ++...++.+.+||..++
T Consensus       231 ~~~~~~~~s~d----g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~  304 (353)
T 3vgz_A          231 HFFINISLDTA----RQRAFITDSKAAEVLVVDTRNGNILAKVAAPES--LAVLFNPARNEAYVTHRQAGKVSVIDAKSY  304 (353)
T ss_dssp             CCEEEEEEETT----TTEEEEEESSSSEEEEEETTTCCEEEEEECSSC--CCEEEETTTTEEEEEETTTTEEEEEETTTT
T ss_pred             cccceEEECCC----CCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC--ceEEECCCCCEEEEEECCCCeEEEEECCCC
Confidence            34677999998    666666554579999999999988777654332  456 89998855 45557899999999998


Q ss_pred             ceeeEecC
Q psy14456         82 GCTNVLTP   89 (93)
Q Consensus        82 ~~~~~~~~   89 (93)
                      +.+..+..
T Consensus       305 ~~~~~~~~  312 (353)
T 3vgz_A          305 KVVKTFDT  312 (353)
T ss_dssp             EEEEEEEC
T ss_pred             eEEEEEec
Confidence            87766643

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=98.84  E-value=3.9e-08  Score=61.04  Aligned_cols=74  Identities=14%  Similarity=0.137  Sum_probs=58.6

Q ss_pred             ccceeEEEEEecCCCCcceEEEeeeCCC-----eEEEEeCCCCceeEEeecccc------------------------ce
Q psy14456          3 DGTVRDVCFIEDTSNKSSLLISGGAGDC-----KIYVTDCATGQAFQALSGHSG------------------------HV   53 (93)
Q Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~g~~~~-----~v~~~~~~~~~~~~~~~~~~~------------------------~v   53 (93)
                      ...+..++|+|+    ++.++.++..++     .|.+||+.+++....+..+..                        .+
T Consensus        36 ~~~~~~~~~Spd----G~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  111 (741)
T 2ecf_A           36 GPTLMKPKVAPD----GSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGI  111 (741)
T ss_dssp             CCCCEEEEECTT----SSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEES
T ss_pred             CCCCCCceEecC----CCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCc
Confidence            356899999999    788887763377     899999999887665544332                        26


Q ss_pred             EEE-EecCCCEEEEecCCCcEEEEeCCCC
Q psy14456         54 LSL-YNWGGATVLSGSHDRTVRFWDLRTR   81 (93)
Q Consensus        54 ~~~-~~~~~~~~~s~~~~~~i~~~d~~~~   81 (93)
                      ..+ |+|+++.+++++. +.+.+||+.++
T Consensus       112 ~~~~~SpDg~~l~~~~~-~~i~~~d~~~~  139 (741)
T 2ecf_A          112 VDYQWSPDAQRLLFPLG-GELYLYDLKQE  139 (741)
T ss_dssp             CCCEECTTSSEEEEEET-TEEEEEESSSC
T ss_pred             ceeEECCCCCEEEEEeC-CcEEEEECCCC
Confidence            777 9999999988775 99999999887

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=98.82  E-value=7.6e-08  Score=54.25  Aligned_cols=80  Identities=11%  Similarity=0.060  Sum_probs=60.5

Q ss_pred             ceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeec-c----ccceEEE-EecCCCEEEEec----------
Q psy14456          5 TVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSG-H----SGHVLSL-YNWGGATVLSGS----------   68 (93)
Q Consensus         5 ~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~-~----~~~v~~~-~~~~~~~~~s~~----------   68 (93)
                      .+..++|+|+    ++.++.++..++.|.+||+.+++.+..+.. +    ...+..+ |++++..++.+.          
T Consensus        35 ~~~~~~~s~d----g~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~  110 (337)
T 1pby_B           35 TPMVPMVAPG----GRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHF  110 (337)
T ss_dssp             CCCCEEECTT----SSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCE
T ss_pred             CccceEEcCC----CCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccc
Confidence            4778999998    666555554689999999999887766642 2    1245677 999998887775          


Q ss_pred             --CCCcEEEEeCCCCceeeEec
Q psy14456         69 --HDRTVRFWDLRTRGCTNVLT   88 (93)
Q Consensus        69 --~~~~i~~~d~~~~~~~~~~~   88 (93)
                        .++.+.+||+.+++....+.
T Consensus       111 ~~~~~~i~v~d~~~~~~~~~~~  132 (337)
T 1pby_B          111 EVQPTRVALYDAETLSRRKAFE  132 (337)
T ss_dssp             EECCCEEEEEETTTTEEEEEEE
T ss_pred             cccCceEEEEECCCCcEEEEEe
Confidence              57999999999887766654

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=98.79  E-value=7.1e-08  Score=53.25  Aligned_cols=75  Identities=9%  Similarity=-0.028  Sum_probs=55.1

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCC-CceeEEeeccc-cceEEE-EecCCCEEEEec--CCCcEEEE
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCAT-GQAFQALSGHS-GHVLSL-YNWGGATVLSGS--HDRTVRFW   76 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~-~~~~~~~~~~~-~~v~~~-~~~~~~~~~s~~--~~~~i~~~   76 (93)
                      |.+.|.+++|+|+    ++.+++++  ++.|.+||+.+ ++.......+. ..+.++ |+|++..++++.  .++...+|
T Consensus        40 ~~~~v~~~~~spd----g~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~  113 (297)
T 2ojh_A           40 TPELFEAPNWSPD----GKYLLLNS--EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIY  113 (297)
T ss_dssp             ESSCCEEEEECTT----SSEEEEEE--TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEE
T ss_pred             CCcceEeeEECCC----CCEEEEEc--CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEE
Confidence            4577999999999    67777653  88999999998 77766555553 567778 999999998887  33445555


Q ss_pred             --eCCCCc
Q psy14456         77 --DLRTRG   82 (93)
Q Consensus        77 --d~~~~~   82 (93)
                        +..++.
T Consensus       114 ~~~~~~~~  121 (297)
T 2ojh_A          114 LLPSTGGT  121 (297)
T ss_dssp             EEETTCCC
T ss_pred             EEECCCCc
Confidence              544443

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=98.76  E-value=3.3e-07  Score=51.74  Aligned_cols=73  Identities=8%  Similarity=0.028  Sum_probs=51.8

Q ss_pred             ceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCC--CC--ceeEEeeccccceEEE-EecCCCEEEEec-CCCcEEEE--
Q psy14456          5 TVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCA--TG--QAFQALSGHSGHVLSL-YNWGGATVLSGS-HDRTVRFW--   76 (93)
Q Consensus         5 ~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~--~~--~~~~~~~~~~~~v~~~-~~~~~~~~~s~~-~~~~i~~~--   76 (93)
                      .+..++|+|+    ++.++.++..++.+.+|++.  .+  ..+..+..+.. +..+ |++++..+++++ .++.+.+|  
T Consensus       232 ~~~~i~~s~d----g~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~  306 (343)
T 1ri6_A          232 WAADIHITPD----GRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEI  306 (343)
T ss_dssp             CEEEEEECTT----SSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEE
T ss_pred             CccceEECCC----CCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEE
Confidence            4557999998    66666555468999999998  33  33444444433 6778 999999777666 68999999  


Q ss_pred             eCCCCc
Q psy14456         77 DLRTRG   82 (93)
Q Consensus        77 d~~~~~   82 (93)
                      |..++.
T Consensus       307 d~~~g~  312 (343)
T 1ri6_A          307 VGEQGL  312 (343)
T ss_dssp             ETTTTE
T ss_pred             cCCCce
Confidence            444553

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=98.75  E-value=8.4e-08  Score=59.59  Aligned_cols=76  Identities=17%  Similarity=0.132  Sum_probs=60.6

Q ss_pred             ceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCc--eeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCCC
Q psy14456          5 TVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQ--AFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTR   81 (93)
Q Consensus         5 ~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~--~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~   81 (93)
                      .|..++|+|+    ++.++.++  ++.|.+||+.++.  ....+..+...+..+ |+|+++.++.++ ++.|.+||+.++
T Consensus       110 ~v~~~~~SpD----g~~l~~~~--~~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g  182 (741)
T 2ecf_A          110 GIVDYQWSPD----AQRLLFPL--GGELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASG  182 (741)
T ss_dssp             ESCCCEECTT----SSEEEEEE--TTEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTT
T ss_pred             CcceeEECCC----CCEEEEEe--CCcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCC
Confidence            4789999999    78777765  4999999998873  344566677788889 999999998876 468999999987


Q ss_pred             ceeeEe
Q psy14456         82 GCTNVL   87 (93)
Q Consensus        82 ~~~~~~   87 (93)
                      ...+..
T Consensus       183 ~~~~~~  188 (741)
T 2ecf_A          183 RQMQLT  188 (741)
T ss_dssp             EEEECC
T ss_pred             CEEEec
Confidence            665443

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.73  E-value=6.4e-07  Score=51.94  Aligned_cols=72  Identities=18%  Similarity=0.190  Sum_probs=57.3

Q ss_pred             EEEEecCCCCcceEEEeee----------CCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEe
Q psy14456          9 VCFIEDTSNKSSLLISGGA----------GDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWD   77 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~g~----------~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d   77 (93)
                      ++|+|+    ++.++.+..          ....|.+||+.+++.+..+..+.  ...+ |+|+++.+++++. +.+.+||
T Consensus       259 ~a~~~d----g~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D  331 (361)
T 2oiz_A          259 VGLHRA----SGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYD  331 (361)
T ss_dssp             EEEETT----TTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEE
T ss_pred             EEEecC----CCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEE
Confidence            577777    455554432          13489999999999999887766  7888 9999998888876 9999999


Q ss_pred             CCCC--ceeeEe
Q psy14456         78 LRTR--GCTNVL   87 (93)
Q Consensus        78 ~~~~--~~~~~~   87 (93)
                      ..++  +.+..+
T Consensus       332 ~~t~~l~~~~~i  343 (361)
T 2oiz_A          332 ISQPEPKLLRTI  343 (361)
T ss_dssp             CSSSSCEEEEEE
T ss_pred             CCCCcceeeEEe
Confidence            9999  888776

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=98.73  E-value=8.9e-08  Score=55.23  Aligned_cols=75  Identities=27%  Similarity=0.264  Sum_probs=57.5

Q ss_pred             EEEEecCCCCcceEEEeeeCCC--eEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCCCceee
Q psy14456          9 VCFIEDTSNKSSLLISGGAGDC--KIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRGCTN   85 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~g~~~~--~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~~~~   85 (93)
                      .+|+|+    ++.++.....++  .|.+||+.+++......++...+... |+|++..++....++.+.+||+.+++...
T Consensus        41 ~~~SpD----g~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~  116 (388)
T 3pe7_A           41 KCFTRD----GSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENV  116 (388)
T ss_dssp             CCBCTT----SCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEE
T ss_pred             ccCCCC----CCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCccee
Confidence            779999    677776664466  48888988888766555565555455 99999999999888999999999887654


Q ss_pred             Ee
Q psy14456         86 VL   87 (93)
Q Consensus        86 ~~   87 (93)
                      .+
T Consensus       117 ~~  118 (388)
T 3pe7_A          117 VY  118 (388)
T ss_dssp             EE
T ss_pred             ee
Confidence            43

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=98.72  E-value=4.3e-07  Score=51.33  Aligned_cols=70  Identities=10%  Similarity=-0.053  Sum_probs=51.9

Q ss_pred             cceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEe-cCCCcEEEEeCCCCce-eeEecC
Q psy14456         19 SSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSG-SHDRTVRFWDLRTRGC-TNVLTP   89 (93)
Q Consensus        19 ~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~-~~~~~i~~~d~~~~~~-~~~~~~   89 (93)
                      ...++.++..++.|.+||..+++....+..+.... .+ |++++..++.+ ..++.+.+||..++.. ...+..
T Consensus         9 ~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~   81 (331)
T 3u4y_A            9 SNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE   81 (331)
T ss_dssp             CCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred             CCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence            44544444469999999999998877776555555 88 99999866544 4588999999998876 555543

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=98.69  E-value=7.5e-08  Score=54.58  Aligned_cols=74  Identities=12%  Similarity=-0.007  Sum_probs=55.7

Q ss_pred             ceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccc------cceEEE-EecCCCEEEEecCC-------
Q psy14456          5 TVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHS------GHVLSL-YNWGGATVLSGSHD-------   70 (93)
Q Consensus         5 ~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~------~~v~~~-~~~~~~~~~s~~~~-------   70 (93)
                      .+..++|+|+    ++.++.++..++.|.+||+.+++.+..+....      ..+..+ |+|+++.+++++.+       
T Consensus        44 ~~~~~~~s~d----g~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~  119 (349)
T 1jmx_B           44 GPGTAMMAPD----NRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDH  119 (349)
T ss_dssp             SSCEEEECTT----SSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSC
T ss_pred             CCceeEECCC----CCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccc
Confidence            4678899998    66555555468999999999988776665322      235677 99999988887754       


Q ss_pred             -----CcEEEEeCCCCc
Q psy14456         71 -----RTVRFWDLRTRG   82 (93)
Q Consensus        71 -----~~i~~~d~~~~~   82 (93)
                           +.+.+||+.+++
T Consensus       120 ~~~~~~~i~~~d~~~~~  136 (349)
T 1jmx_B          120 YVVKPPRLEVFSTADGL  136 (349)
T ss_dssp             EEECCCEEEEEEGGGGG
T ss_pred             cccCCCeEEEEECCCcc
Confidence                 899999998754

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=98.69  E-value=9.4e-08  Score=59.19  Aligned_cols=79  Identities=13%  Similarity=0.087  Sum_probs=57.7

Q ss_pred             cceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccce------------------EEE-EecCCCEE
Q psy14456          4 GTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHV------------------LSL-YNWGGATV   64 (93)
Q Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v------------------~~~-~~~~~~~~   64 (93)
                      ..+..++|+|+    ++.++.+.  ++.|.+|++.++........+...+                  ..+ |+|+++.+
T Consensus       114 ~~~~~~~~SPd----G~~la~~~--~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~l  187 (723)
T 1xfd_A          114 AKLQYAGWGPK----GQQLIFIF--ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRL  187 (723)
T ss_dssp             CCCSBCCBCSS----TTCEEEEE--TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEE
T ss_pred             ccccccEECCC----CCEEEEEE--CCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEE
Confidence            34788999999    77777764  5899999999887765554433322                  678 99999999


Q ss_pred             EEecCCC----------------------------------cEEEEeCCCCceeeEec
Q psy14456         65 LSGSHDR----------------------------------TVRFWDLRTRGCTNVLT   88 (93)
Q Consensus        65 ~s~~~~~----------------------------------~i~~~d~~~~~~~~~~~   88 (93)
                      +.++.+.                                  .+.+||+.++.....+.
T Consensus       188 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~  245 (723)
T 1xfd_A          188 AYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMM  245 (723)
T ss_dssp             EEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECC
T ss_pred             EEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEee
Confidence            8776432                                  78999998877544443

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=98.63  E-value=4.1e-07  Score=56.35  Aligned_cols=74  Identities=14%  Similarity=0.111  Sum_probs=56.5

Q ss_pred             eeEEEEEecCCCCcceEEEeee--------------------------------CCCeEEEEeCCCCceeEEee--cccc
Q psy14456          6 VRDVCFIEDTSNKSSLLISGGA--------------------------------GDCKIYVTDCATGQAFQALS--GHSG   51 (93)
Q Consensus         6 v~~~~~~~~~~~~~~~~~~~g~--------------------------------~~~~v~~~~~~~~~~~~~~~--~~~~   51 (93)
                      +.++.|+|+    ++.++.+..                                .+..|.+||+.++.......  .+..
T Consensus       183 ~~~~~~SpD----g~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~  258 (706)
T 2z3z_A          183 EKGTFWSPK----GSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEK  258 (706)
T ss_dssp             CCSEEECTT----SSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTC
T ss_pred             CceEEECCC----CCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCce
Confidence            588999999    777776641                                24679999999887654332  4566


Q ss_pred             ceEEE-EecCCCEEEEecCCC-----cEEEEeCCCCce
Q psy14456         52 HVLSL-YNWGGATVLSGSHDR-----TVRFWDLRTRGC   83 (93)
Q Consensus        52 ~v~~~-~~~~~~~~~s~~~~~-----~i~~~d~~~~~~   83 (93)
                      .+..+ |+|+++.+++++.++     .+.+||..++..
T Consensus       259 ~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~  296 (706)
T 2z3z_A          259 FLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRF  296 (706)
T ss_dssp             EEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCE
T ss_pred             eEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCce
Confidence            78888 999999888876665     899999998833

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=98.63  E-value=3.7e-08  Score=60.98  Aligned_cols=73  Identities=7%  Similarity=0.012  Sum_probs=58.2

Q ss_pred             ceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeecccc---ceEEE-EecCCCEEEEecCC---------C
Q psy14456          5 TVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSG---HVLSL-YNWGGATVLSGSHD---------R   71 (93)
Q Consensus         5 ~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~---~v~~~-~~~~~~~~~s~~~~---------~   71 (93)
                      ....++|+|+    ++++++ + .++.+++||+.+++....+..+..   .+..+ |+|+++.+++++.+         +
T Consensus        18 ~~~~~~~spd----g~~~~~-~-~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~   91 (723)
T 1xfd_A           18 HDPEAKWISD----TEFIYR-E-QKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTG   91 (723)
T ss_dssp             CCCCCCBSSS----SCBCCC-C-SSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCS
T ss_pred             cccccEEcCC----CcEEEE-e-CCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeeccee
Confidence            4677899998    665544 4 599999999999988777766654   37888 99999999888654         6


Q ss_pred             cEEEEeCCCCce
Q psy14456         72 TVRFWDLRTRGC   83 (93)
Q Consensus        72 ~i~~~d~~~~~~   83 (93)
                      .+.+||+.++..
T Consensus        92 ~i~~~d~~~~~~  103 (723)
T 1xfd_A           92 YYVLSKIPHGDP  103 (723)
T ss_dssp             EEEEEESSSCCC
T ss_pred             eEEEEECCCCce
Confidence            788999998865

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=98.62  E-value=1.1e-06  Score=50.15  Aligned_cols=76  Identities=12%  Similarity=0.052  Sum_probs=53.3

Q ss_pred             ccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCC-Cc--eeEEeecc---------ccceEEE-EecCCCEEEEecC
Q psy14456          3 DGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCAT-GQ--AFQALSGH---------SGHVLSL-YNWGGATVLSGSH   69 (93)
Q Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~-~~--~~~~~~~~---------~~~v~~~-~~~~~~~~~s~~~   69 (93)
                      ...+..++|+|+    ++.+++++..++.+.+|++.. +.  .+..+...         ...+..+ |+|+++++++...
T Consensus        85 ~~~p~~~a~spd----g~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~  160 (347)
T 3hfq_A           85 GTPPAYVAVDEA----RQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLG  160 (347)
T ss_dssp             SCCCSEEEEETT----TTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETT
T ss_pred             CCCCEEEEECCC----CCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCC
Confidence            346778999999    677777664589999999863 22  22333211         1236678 9999996677777


Q ss_pred             CCcEEEEeCC-CCc
Q psy14456         70 DRTVRFWDLR-TRG   82 (93)
Q Consensus        70 ~~~i~~~d~~-~~~   82 (93)
                      ++.+.+|++. ++.
T Consensus       161 ~~~v~~~~~~~~g~  174 (347)
T 3hfq_A          161 SDKVYVYNVSDAGQ  174 (347)
T ss_dssp             TTEEEEEEECTTSC
T ss_pred             CCEEEEEEECCCCc
Confidence            8899999998 443

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=98.61  E-value=1.8e-06  Score=49.56  Aligned_cols=75  Identities=16%  Similarity=0.096  Sum_probs=52.9

Q ss_pred             ceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCce------e------EE-eeccccceEEE-EecCCCEEEEec-C
Q psy14456          5 TVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQA------F------QA-LSGHSGHVLSL-YNWGGATVLSGS-H   69 (93)
Q Consensus         5 ~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~------~------~~-~~~~~~~v~~~-~~~~~~~~~s~~-~   69 (93)
                      .+.+++|+|+    ++.++.++..++.+.+|+++....      +      .. ..........+ |+|+++.++..+ .
T Consensus       156 ~~~~~~~spd----g~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~  231 (361)
T 3scy_A          156 HLHCVRITPD----GKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEI  231 (361)
T ss_dssp             CEEEEEECTT----SSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT
T ss_pred             cceEEEECCC----CCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCC
Confidence            3577999999    676666665689999998775431      1      11 12334456778 999998776655 7


Q ss_pred             CCcEEEEeCCCCce
Q psy14456         70 DRTVRFWDLRTRGC   83 (93)
Q Consensus        70 ~~~i~~~d~~~~~~   83 (93)
                      ++.+.+|++.++..
T Consensus       232 ~~~v~v~~~~~g~~  245 (361)
T 3scy_A          232 GGTVIAFRYADGML  245 (361)
T ss_dssp             TCEEEEEEEETTEE
T ss_pred             CCeEEEEEecCCce
Confidence            89999999986643

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=98.61  E-value=1.2e-06  Score=50.21  Aligned_cols=76  Identities=13%  Similarity=0.104  Sum_probs=53.0

Q ss_pred             ceeEEEEEecCCCCcceEEEeeeC-CCeEEEEeCC--CCc--eeEEeeccccceEEE-EecCCCEEEEec-CCCcEEEE-
Q psy14456          5 TVRDVCFIEDTSNKSSLLISGGAG-DCKIYVTDCA--TGQ--AFQALSGHSGHVLSL-YNWGGATVLSGS-HDRTVRFW-   76 (93)
Q Consensus         5 ~v~~~~~~~~~~~~~~~~~~~g~~-~~~v~~~~~~--~~~--~~~~~~~~~~~v~~~-~~~~~~~~~s~~-~~~~i~~~-   76 (93)
                      ....++|+|+    +++++++... ++.+.+|+++  ++.  .+..+.. ...+..+ |+|+++++++++ .++.+.+| 
T Consensus       260 ~~~~i~~spd----g~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~  334 (361)
T 3scy_A          260 GSGDIHLSPD----GKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFE  334 (361)
T ss_dssp             CEEEEEECTT----SSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEE
T ss_pred             CcccEEECCC----CCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEE
Confidence            3568999999    7777776644 5899999986  344  3334443 4456788 999999887766 67889996 


Q ss_pred             -eCCCCceee
Q psy14456         77 -DLRTRGCTN   85 (93)
Q Consensus        77 -d~~~~~~~~   85 (93)
                       |..+++...
T Consensus       335 ~d~~~g~~~~  344 (361)
T 3scy_A          335 RDQATGLLTD  344 (361)
T ss_dssp             ECTTTCCEEE
T ss_pred             EECCCCcEee
Confidence             555665433

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=98.61  E-value=1.2e-07  Score=58.67  Aligned_cols=78  Identities=12%  Similarity=0.104  Sum_probs=57.6

Q ss_pred             ccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCC-----CceeEEeeccccc--------------eEEE-EecCCC
Q psy14456          3 DGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCAT-----GQAFQALSGHSGH--------------VLSL-YNWGGA   62 (93)
Q Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~-----~~~~~~~~~~~~~--------------v~~~-~~~~~~   62 (93)
                      .+.+..++|+|+    ++.++.+  .++.|.+|++.+     ++.......+...              +..+ |+|+++
T Consensus       120 ~~~~~~~~~Spd----G~~la~~--~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~  193 (706)
T 2z3z_A          120 NEETASLDFSPV----GDRVAYV--RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGS  193 (706)
T ss_dssp             TTCCTTCEECTT----SSEEEEE--ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSS
T ss_pred             cccccCCcCCCC----CCEEEEE--ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCC
Confidence            456788999999    7777774  389999999988     7665544333332              3677 999999


Q ss_pred             EEEEec---------------------------------CCCcEEEEeCCCCceeeE
Q psy14456         63 TVLSGS---------------------------------HDRTVRFWDLRTRGCTNV   86 (93)
Q Consensus        63 ~~~s~~---------------------------------~~~~i~~~d~~~~~~~~~   86 (93)
                      .+++++                                 .+..+.+||+.++.....
T Consensus       194 ~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~  250 (706)
T 2z3z_A          194 CLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYL  250 (706)
T ss_dssp             EEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEEC
T ss_pred             EEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEee
Confidence            998876                                 446799999988765443

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=98.60  E-value=8.8e-07  Score=57.34  Aligned_cols=78  Identities=17%  Similarity=0.147  Sum_probs=62.5

Q ss_pred             ceeEEEEEecCCCCcceEEEeeeCCCeEE-EEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCCCc
Q psy14456          5 TVRDVCFIEDTSNKSSLLISGGAGDCKIY-VTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRG   82 (93)
Q Consensus         5 ~v~~~~~~~~~~~~~~~~~~~g~~~~~v~-~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~   82 (93)
                      .+..++|+ +    ++.++.++. +..+. +|+...+.... +.++...+..+ |+|++..+++++.++.+.+||+.+++
T Consensus       339 ~~~~~~~s-d----g~~l~~~s~-~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~  411 (1045)
T 1k32_A          339 RYVRRGGD-T----KVAFIHGTR-EGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGK  411 (1045)
T ss_dssp             EEEEECSS-S----EEEEEEEET-TEEEEEEEETTTCCEEE-CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred             eEEeeeEc-C----CCeEEEEEC-CCceEEEEECCCCCceE-ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCc
Confidence            67888888 7    677777663 77888 88988776543 44777788889 99999999999999999999999988


Q ss_pred             eeeEecC
Q psy14456         83 CTNVLTP   89 (93)
Q Consensus        83 ~~~~~~~   89 (93)
                      ....+..
T Consensus       412 ~~~~~~~  418 (1045)
T 1k32_A          412 PTVIERS  418 (1045)
T ss_dssp             EEEEEEC
T ss_pred             eEEeccC
Confidence            7666533

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=98.54  E-value=1.6e-07  Score=58.30  Aligned_cols=70  Identities=19%  Similarity=0.188  Sum_probs=55.3

Q ss_pred             EEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeecccc---ceEEE-EecCCCEEEEecC---------CCcEE
Q psy14456          8 DVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSG---HVLSL-YNWGGATVLSGSH---------DRTVR   74 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~---~v~~~-~~~~~~~~~s~~~---------~~~i~   74 (93)
                      .+.|+|+    +. ++.++ .++.|++||+.+++....+..+..   .+..+ |+|+++.++.++.         ++.+.
T Consensus        20 ~~~~s~d----g~-~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~   93 (719)
T 1z68_A           20 FPNWISG----QE-YLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYY   93 (719)
T ss_dssp             CCEESSS----SE-EEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred             ccEECCC----Ce-EEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEE
Confidence            6789998    65 44444 499999999999987766655543   37788 9999999987765         68999


Q ss_pred             EEeCCCCce
Q psy14456         75 FWDLRTRGC   83 (93)
Q Consensus        75 ~~d~~~~~~   83 (93)
                      +||+.+++.
T Consensus        94 ~~d~~~g~~  102 (719)
T 1z68_A           94 IYDLSNGEF  102 (719)
T ss_dssp             EEETTTTEE
T ss_pred             EEECCCCcc
Confidence            999998876

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=98.53  E-value=3.4e-07  Score=55.71  Aligned_cols=75  Identities=11%  Similarity=0.024  Sum_probs=57.4

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCC--eEEEEeCCCCceeEEeeccccce--------EEE-EecCCCEEEEecCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDC--KIYVTDCATGQAFQALSGHSGHV--------LSL-YNWGGATVLSGSHD   70 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~--~v~~~~~~~~~~~~~~~~~~~~v--------~~~-~~~~~~~~~s~~~~   70 (93)
                      |.+.+..++|+|+    ++.++++. .++  .|.+||++++... .+.++...+        ... |+|++.++++++.+
T Consensus       193 ~~~~~~~~~~SpD----G~~l~~~~-~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~  266 (582)
T 3o4h_A          193 GEGSFSSASISPG----MKVTAGLE-TAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARRE  266 (582)
T ss_dssp             SSCEEEEEEECTT----SCEEEEEE-CSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEET
T ss_pred             CCCccccceECCC----CCEEEEcc-CCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcC
Confidence            4567899999999    78888554 588  8999999988776 555554322        233 79999888999999


Q ss_pred             CcEEEEeCCCCcee
Q psy14456         71 RTVRFWDLRTRGCT   84 (93)
Q Consensus        71 ~~i~~~d~~~~~~~   84 (93)
                      +.+.+|++  ++..
T Consensus       267 g~~~l~~~--g~~~  278 (582)
T 3o4h_A          267 GRSAVFID--GERV  278 (582)
T ss_dssp             TEEEEEET--TEEE
T ss_pred             CcEEEEEE--CCee
Confidence            99999998  5443

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=98.48  E-value=1.4e-05  Score=44.69  Aligned_cols=76  Identities=9%  Similarity=-0.030  Sum_probs=58.0

Q ss_pred             cceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCCCc
Q psy14456          4 GTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRG   82 (93)
Q Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~   82 (93)
                      ....+++|+|+    ++.++.++..++.|..|+...+  ...+..+...+..+ +++++.++++...++.|.+||..+++
T Consensus        28 ~~~eg~~~d~~----g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~  101 (296)
T 3e5z_A           28 TWTEGPVYVPA----RSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGE  101 (296)
T ss_dssp             SSEEEEEEEGG----GTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCC
T ss_pred             ccccCCeEeCC----CCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCc
Confidence            34678999998    6634444446899999998877  55565566777888 99999988887777899999998776


Q ss_pred             eee
Q psy14456         83 CTN   85 (93)
Q Consensus        83 ~~~   85 (93)
                      ...
T Consensus       102 ~~~  104 (296)
T 3e5z_A          102 WES  104 (296)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            543

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=98.42  E-value=5.1e-07  Score=56.09  Aligned_cols=72  Identities=10%  Similarity=0.075  Sum_probs=55.0

Q ss_pred             eeEEEEEecCCCCcceEEEeee--------CCCeEEEEeCCCCcee--EEeeccccceEEE-EecCCCEEEEecCCCcEE
Q psy14456          6 VRDVCFIEDTSNKSSLLISGGA--------GDCKIYVTDCATGQAF--QALSGHSGHVLSL-YNWGGATVLSGSHDRTVR   74 (93)
Q Consensus         6 v~~~~~~~~~~~~~~~~~~~g~--------~~~~v~~~~~~~~~~~--~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~   74 (93)
                      +..++|+|+    ++.++.+..        .++.+.+||+.+++.+  ..+   ...+..+ |+|+++.++.+. ++.|.
T Consensus        62 ~~~~~~SpD----g~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~  133 (719)
T 1z68_A           62 ASNYGLSPD----RQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIY  133 (719)
T ss_dssp             CSEEEECTT----SSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEE
T ss_pred             eeeEEECCC----CCeEEEEecCceeEEeecceEEEEEECCCCccccceec---CcccccceECCCCCEEEEEE-CCeEE
Confidence            789999999    777776542        1589999999988762  222   2456677 999999998875 78999


Q ss_pred             EEeCCCCceee
Q psy14456         75 FWDLRTRGCTN   85 (93)
Q Consensus        75 ~~d~~~~~~~~   85 (93)
                      +||+.++...+
T Consensus       134 ~~~~~~g~~~~  144 (719)
T 1z68_A          134 LKQRPGDPPFQ  144 (719)
T ss_dssp             EESSTTSCCEE
T ss_pred             EEeCCCCCcEE
Confidence            99998876544

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=98.40  E-value=5.2e-06  Score=51.13  Aligned_cols=77  Identities=12%  Similarity=0.090  Sum_probs=53.6

Q ss_pred             cceeEEEEEecCCCCcceEEEeeeCC-------CeEEEEeCC-CC---ceeEEeeccccceEEE-EecCCCEEEEecCCC
Q psy14456          4 GTVRDVCFIEDTSNKSSLLISGGAGD-------CKIYVTDCA-TG---QAFQALSGHSGHVLSL-YNWGGATVLSGSHDR   71 (93)
Q Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~g~~~-------~~v~~~~~~-~~---~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~   71 (93)
                      ..+..++|+|+    ++.++.+....       ..|.+|++. ++   .......++...+..+ |+|++++++++..++
T Consensus       188 ~~~~~~~~SpD----G~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~  263 (662)
T 3azo_A          188 RFVTGPRLSPD----GRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTG  263 (662)
T ss_dssp             SEECCCEECTT----SSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTS
T ss_pred             CcccCceECCC----CCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCC
Confidence            45777899999    77776555322       479999998 56   3333334456778888 999999878887777


Q ss_pred             --cEEEEeCCCCcee
Q psy14456         72 --TVRFWDLRTRGCT   84 (93)
Q Consensus        72 --~i~~~d~~~~~~~   84 (93)
                        .+..||..+++..
T Consensus       264 ~~~l~~~~~~~~~~~  278 (662)
T 3azo_A          264 WWNLHRVDPATGAAT  278 (662)
T ss_dssp             SCEEEEECTTTCCEE
T ss_pred             CeEEEEEECCCCcee
Confidence              5666676565543

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=98.38  E-value=4.7e-06  Score=52.04  Aligned_cols=74  Identities=12%  Similarity=0.170  Sum_probs=53.8

Q ss_pred             cceeEEEEEecCCCCcceEEEeeeCCC----eEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCc------
Q psy14456          4 GTVRDVCFIEDTSNKSSLLISGGAGDC----KIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRT------   72 (93)
Q Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~g~~~~----~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~------   72 (93)
                      ..+..++|+|+    +++++.+.+++|    .|++||+.+++.+...... ..+..+ |+|++..++.++.+..      
T Consensus       125 ~~~~~~~~SPD----g~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~  199 (710)
T 2xdw_A          125 VALRGYAFSED----GEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDG  199 (710)
T ss_dssp             EEEEEEEECTT----SSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSS
T ss_pred             EEEEEEEECCC----CCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccc
Confidence            35788999999    677765554344    8999999998876532222 224567 9999998887776654      


Q ss_pred             ----------EEEEeCCCCc
Q psy14456         73 ----------VRFWDLRTRG   82 (93)
Q Consensus        73 ----------i~~~d~~~~~   82 (93)
                                |.+|++.+++
T Consensus       200 ~~~~~~~~~~v~~~~l~t~~  219 (710)
T 2xdw_A          200 TETSTNLHQKLYYHVLGTDQ  219 (710)
T ss_dssp             SCCCCCCCCEEEEEETTSCG
T ss_pred             cccccCCCCEEEEEECCCCc
Confidence                      9999998775

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=98.36  E-value=3e-05  Score=43.96  Aligned_cols=76  Identities=9%  Similarity=0.035  Sum_probs=56.3

Q ss_pred             cceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCC----CcEEEEeC
Q psy14456          4 GTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHD----RTVRFWDL   78 (93)
Q Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~----~~i~~~d~   78 (93)
                      ..+.+++|+|+    +.++++.. .++.|.+|+.++++.......+...+..+ +++++.++++...+    +.+.+||.
T Consensus        45 ~~~~~~~~~~~----g~l~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~  119 (333)
T 2dg1_A           45 LQLEGLNFDRQ----GQLFLLDV-FEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATE  119 (333)
T ss_dssp             CCEEEEEECTT----SCEEEEET-TTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECT
T ss_pred             ccccCcEECCC----CCEEEEEC-CCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeC
Confidence            44678899887    56555543 58999999998877654443456678889 99999888877665    68999998


Q ss_pred             CCCcee
Q psy14456         79 RTRGCT   84 (93)
Q Consensus        79 ~~~~~~   84 (93)
                      .++...
T Consensus       120 ~~~~~~  125 (333)
T 2dg1_A          120 NGDNLQ  125 (333)
T ss_dssp             TSCSCE
T ss_pred             CCCEEE
Confidence            876544

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.36  E-value=1.3e-06  Score=50.36  Aligned_cols=79  Identities=20%  Similarity=0.212  Sum_probs=54.4

Q ss_pred             eeEEEEEecCCCCcceEEEeeeCC--CeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCCCc
Q psy14456          6 VRDVCFIEDTSNKSSLLISGGAGD--CKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRG   82 (93)
Q Consensus         6 v~~~~~~~~~~~~~~~~~~~g~~~--~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~   82 (93)
                      +..++|+|+    ++.++.....+  ..+.+|++.+++......+........ |+|+++.++..+.++.+.+||+.+++
T Consensus        38 ~~~~~~Spd----G~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~  113 (396)
T 3c5m_A           38 FYQKCFTQD----GKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLE  113 (396)
T ss_dssp             TTSCCBCTT----SCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCC
T ss_pred             eecCcCCCC----CCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCC
Confidence            667889998    67766654333  468888988776544333332222225 89999999888888899999998877


Q ss_pred             eeeEec
Q psy14456         83 CTNVLT   88 (93)
Q Consensus        83 ~~~~~~   88 (93)
                      ......
T Consensus       114 ~~~~~~  119 (396)
T 3c5m_A          114 EQVIYT  119 (396)
T ss_dssp             EEEEEE
T ss_pred             cEEEEe
Confidence            554443

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=98.35  E-value=1.1e-06  Score=55.07  Aligned_cols=75  Identities=16%  Similarity=0.170  Sum_probs=56.6

Q ss_pred             cceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccc-----eEEE-EecCCCEEEEecCC-------
Q psy14456          4 GTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGH-----VLSL-YNWGGATVLSGSHD-------   70 (93)
Q Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~-----v~~~-~~~~~~~~~s~~~~-------   70 (93)
                      .....+.|+|+    ++++++ +  ++.|.+|++.++++...+.+|...     ...+ |+|+++.++.++.+       
T Consensus        17 ~~~~~~~w~~d----g~~~~~-~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~   89 (740)
T 4a5s_A           17 LKLYSLRWISD----HEYLYK-Q--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHS   89 (740)
T ss_dssp             CCCCCEEECSS----SEEEEE-E--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSC
T ss_pred             ccccccEECCC----CcEEEE-c--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEc
Confidence            34668899998    666655 3  899999999999887777766532     2236 89999998887765       


Q ss_pred             --CcEEEEeCCCCceee
Q psy14456         71 --RTVRFWDLRTRGCTN   85 (93)
Q Consensus        71 --~~i~~~d~~~~~~~~   85 (93)
                        +.+.+||+.+++..+
T Consensus        90 ~~~~~~~~d~~~~~~~~  106 (740)
T 4a5s_A           90 YTASYDIYDLNKRQLIT  106 (740)
T ss_dssp             EEEEEEEEETTTTEECC
T ss_pred             cceEEEEEECCCCcEEE
Confidence              566799999887543

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=98.35  E-value=1.4e-05  Score=46.12  Aligned_cols=72  Identities=10%  Similarity=0.093  Sum_probs=52.7

Q ss_pred             cceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCC-CCcee--EEee--ccccceEEE-EecCCCEEEEec-CCCcEEEE
Q psy14456          4 GTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCA-TGQAF--QALS--GHSGHVLSL-YNWGGATVLSGS-HDRTVRFW   76 (93)
Q Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~-~~~~~--~~~~--~~~~~v~~~-~~~~~~~~~s~~-~~~~i~~~   76 (93)
                      ..+.+++|+|+    ++.++++...+..|.+|+++ +++..  ..+.  .+...+..+ |+|+++.++.++ .++.+.+|
T Consensus       145 ~~~~~~~~spd----G~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~  220 (365)
T 1jof_A          145 TGIHGMVFDPT----ETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEY  220 (365)
T ss_dssp             CCEEEEEECTT----SSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             CcceEEEECCC----CCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEE
Confidence            46889999999    67777665447899999998 66543  2332  234567788 999998887665 57899999


Q ss_pred             eCC
Q psy14456         77 DLR   79 (93)
Q Consensus        77 d~~   79 (93)
                      ++.
T Consensus       221 ~~~  223 (365)
T 1jof_A          221 VID  223 (365)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            765

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=98.34  E-value=6.8e-06  Score=47.47  Aligned_cols=73  Identities=8%  Similarity=0.009  Sum_probs=50.7

Q ss_pred             ceeEEE-EEecCCCCcceEEEeeeCCC-----eEEEEeCC-CCceeE---EeeccccceEEE-Eec---CCCEEEEecC-
Q psy14456          5 TVRDVC-FIEDTSNKSSLLISGGAGDC-----KIYVTDCA-TGQAFQ---ALSGHSGHVLSL-YNW---GGATVLSGSH-   69 (93)
Q Consensus         5 ~v~~~~-~~~~~~~~~~~~~~~g~~~~-----~v~~~~~~-~~~~~~---~~~~~~~~v~~~-~~~---~~~~~~s~~~-   69 (93)
                      .+..++ |+|+    ++.++++...+.     .|.+|+++ +++...   ....+......+ |+|   ++.++++++. 
T Consensus       255 ~~~~i~~~spd----G~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~  330 (365)
T 1jof_A          255 YRADVCALTFS----GKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQ  330 (365)
T ss_dssp             EEEEEEEECTT----SSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSS
T ss_pred             ccccEEEECCC----CCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcC
Confidence            477899 9999    677666542233     89999986 555433   122333445567 899   7998888875 


Q ss_pred             CCcEEEEeCCCC
Q psy14456         70 DRTVRFWDLRTR   81 (93)
Q Consensus        70 ~~~i~~~d~~~~   81 (93)
                      ++.+.+|++...
T Consensus       331 ~~~v~v~~~~~~  342 (365)
T 1jof_A          331 EGWLEIYRWKDE  342 (365)
T ss_dssp             SCEEEEEEEETT
T ss_pred             CCeEEEEEEchh
Confidence            589999988765

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=98.33  E-value=1.7e-05  Score=45.16  Aligned_cols=76  Identities=17%  Similarity=0.132  Sum_probs=51.5

Q ss_pred             ceeEEEEEecCCCCcceEEEeeeCC--Ce--EEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecC----------
Q psy14456          5 TVRDVCFIEDTSNKSSLLISGGAGD--CK--IYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSH----------   69 (93)
Q Consensus         5 ~v~~~~~~~~~~~~~~~~~~~g~~~--~~--v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~----------   69 (93)
                      .+..+.|+|+    ++.++.....+  +.  |.+|++.+++........ . +..+ |+|++..++..+.          
T Consensus        60 ~~~~~~~SpD----g~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~  133 (347)
T 2gop_A           60 NATMPRISPD----GKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIF  133 (347)
T ss_dssp             SCEEEEECTT----SSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC------
T ss_pred             cCCCeEECCC----CCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEE
Confidence            4667899999    67766655322  33  777788777655443333 3 7788 9999998876652          


Q ss_pred             -----------------CCcEEEEeCCCCceeeE
Q psy14456         70 -----------------DRTVRFWDLRTRGCTNV   86 (93)
Q Consensus        70 -----------------~~~i~~~d~~~~~~~~~   86 (93)
                                       ...+.+||+.+++.++.
T Consensus       134 ~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~  167 (347)
T 2gop_A          134 EDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEE  167 (347)
T ss_dssp             ---CCCC---------CEEEEEEEETTTTEEEEE
T ss_pred             EcccceeecCcccccCccceEEEEECCCCeEEee
Confidence                             25688899988776333

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=98.30  E-value=5e-06  Score=51.22  Aligned_cols=74  Identities=8%  Similarity=-0.017  Sum_probs=54.6

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCC----------CeEEEEeCCC------CceeEEee-ccccceEEE-EecCCCE
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGD----------CKIYVTDCAT------GQAFQALS-GHSGHVLSL-YNWGGAT   63 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~----------~~v~~~~~~~------~~~~~~~~-~~~~~v~~~-~~~~~~~   63 (93)
                      |...+..++|+|+    ++.++.+.. +          ..|.+|++.+      +.. ..+. .+...+..+ |+|+++.
T Consensus       128 ~~~~~~~~~~spD----g~~l~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~  201 (662)
T 3azo_A          128 GGLRWADPVLLPE----RGEVWCMAE-EFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQ  201 (662)
T ss_dssp             TCEEEEEEEEETT----TTEEEEEEE-EECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSE
T ss_pred             CCccccCcEECCC----CCEEEEEEe-cccCCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCE
Confidence            4567889999999    677776653 4          5899999987      544 4444 455666677 9999999


Q ss_pred             EEEecCC--------CcEEEEeCC-CC
Q psy14456         64 VLSGSHD--------RTVRFWDLR-TR   81 (93)
Q Consensus        64 ~~s~~~~--------~~i~~~d~~-~~   81 (93)
                      ++..+.+        ..|.+||+. ++
T Consensus       202 la~~~~~~~~~~~~~~~i~~~d~~~~g  228 (662)
T 3azo_A          202 AVWLAWDHPRMPWEGTELKTARVTEDG  228 (662)
T ss_dssp             EEEEEECTTCCTTTCEEEEEEEECTTS
T ss_pred             EEEEECCCCCCCCCCcEEEEEEECCCC
Confidence            8866643        479999998 56

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=98.26  E-value=1.5e-05  Score=47.00  Aligned_cols=73  Identities=14%  Similarity=0.067  Sum_probs=52.1

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      |+.++.++.+.+.     + ++++. .||.+.+|++..+....    +...+.++ |+|+|  ++.+..|+.+.+|+...
T Consensus       125 ~~~~v~~i~~~~p-----~-~av~~-~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~  191 (388)
T 1xip_A          125 FEKPVFQLKNVNN-----T-LVILN-SVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRN  191 (388)
T ss_dssp             CSSCEEEEEECSS-----E-EEEEE-TTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSCEEEEEEET
T ss_pred             eecceeeEEecCC-----C-EEEEE-CCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCC
Confidence            3445666665543     2 55554 59999999998777543    34578899 99988  66788899999998877


Q ss_pred             Cce--eeEe
Q psy14456         81 RGC--TNVL   87 (93)
Q Consensus        81 ~~~--~~~~   87 (93)
                      +..  .+.+
T Consensus       192 ~~~~~k~~I  200 (388)
T 1xip_A          192 GEMEKQFEF  200 (388)
T ss_dssp             TEEEEEEEE
T ss_pred             cccccccee
Confidence            664  4445

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=98.23  E-value=5.8e-06  Score=51.88  Aligned_cols=72  Identities=7%  Similarity=-0.056  Sum_probs=55.0

Q ss_pred             eEEEEEecCCCCcceEEEeeeCC---------CeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEE
Q psy14456          7 RDVCFIEDTSNKSSLLISGGAGD---------CKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFW   76 (93)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~g~~~---------~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~   76 (93)
                      ....|+|+    ++.++.+.. +         +.+.+||+.+++.. .+..+.+.+... |+|+++.++.+ .++.|.+|
T Consensus        65 ~~~~~Spd----g~~l~~~~~-~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~  137 (740)
T 4a5s_A           65 NDYSISPD----GQFILLEYN-YVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVK  137 (740)
T ss_dssp             CEEEECTT----SSEEEEEEE-EEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEE
T ss_pred             cceEECCC----CCEEEEEEC-CeeeEEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEE-ECCeEEEE
Confidence            34788999    677766552 3         56779999988754 356667778888 99999998877 47899999


Q ss_pred             eCCCCceee
Q psy14456         77 DLRTRGCTN   85 (93)
Q Consensus        77 d~~~~~~~~   85 (93)
                      +..++...+
T Consensus       138 ~~~~~~~~~  146 (740)
T 4a5s_A          138 IEPNLPSYR  146 (740)
T ss_dssp             SSTTSCCEE
T ss_pred             ECCCCceEE
Confidence            998876543

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.23  E-value=7e-06  Score=47.63  Aligned_cols=75  Identities=9%  Similarity=-0.052  Sum_probs=56.4

Q ss_pred             EEEEEecCCCCcceEEEeee---------CCCeEEEEeCCCCceeEEeecc------ccceEEE-EecCCCEEEEecC--
Q psy14456          8 DVCFIEDTSNKSSLLISGGA---------GDCKIYVTDCATGQAFQALSGH------SGHVLSL-YNWGGATVLSGSH--   69 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~g~---------~~~~v~~~~~~~~~~~~~~~~~------~~~v~~~-~~~~~~~~~s~~~--   69 (93)
                      .++|+|+    ++.++++..         .++.|.+||..+.+.+..+...      ......+ ++|+++++++++.  
T Consensus        54 ~i~~spd----g~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~  129 (361)
T 2oiz_A           54 HVQVSND----GKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASP  129 (361)
T ss_dssp             EEEECTT----SSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESS
T ss_pred             ceEECCC----CCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCC
Confidence            7899999    677766541         2577999999988887766422      2234566 8999999887763  


Q ss_pred             CCcEEEEeCCCCceeeE
Q psy14456         70 DRTVRFWDLRTRGCTNV   86 (93)
Q Consensus        70 ~~~i~~~d~~~~~~~~~   86 (93)
                      ++.+.+||+.+++.+..
T Consensus       130 ~~~v~v~d~~~~~~~~~  146 (361)
T 2oiz_A          130 ATSIGIVDVAKGDYVED  146 (361)
T ss_dssp             SEEEEEEETTTTEEEEE
T ss_pred             CCeEEEEECCCCcEEEE
Confidence            68999999999887766

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=98.20  E-value=6.1e-05  Score=44.51  Aligned_cols=69  Identities=20%  Similarity=0.264  Sum_probs=52.3

Q ss_pred             eeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCCCcee
Q psy14456          6 VRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRGCT   84 (93)
Q Consensus         6 v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~~~   84 (93)
                      |+.++|  +    +..++.+  .++.|++||+...........+...+..+ +.+.  .++.+..|+.+.+||+..+...
T Consensus        90 V~~l~f--d----~~~L~v~--~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~  159 (388)
T 1xip_A           90 VIFVCF--H----GDQVLVS--TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTK  159 (388)
T ss_dssp             EEEEEE--E----TTEEEEE--ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEE
T ss_pred             eeEEEE--C----CCEEEEE--cCCcEEEEEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCccc
Confidence            899999  5    5666665  48999999998776555566666777776 5432  3888899999999999876543

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.18  E-value=9.8e-05  Score=45.55  Aligned_cols=78  Identities=15%  Similarity=0.127  Sum_probs=60.1

Q ss_pred             ceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCC--CCceeEEeeccccceEEE-Ee----cCCCEEEEec-CCCcEEEE
Q psy14456          5 TVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCA--TGQAFQALSGHSGHVLSL-YN----WGGATVLSGS-HDRTVRFW   76 (93)
Q Consensus         5 ~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~--~~~~~~~~~~~~~~v~~~-~~----~~~~~~~s~~-~~~~i~~~   76 (93)
                      .+..+.|+|+    ++++++++ +++.|.+||+.  +++.+..+..... ...+ |+    |++++++.++ .++.+.++
T Consensus       198 ~p~~v~~SpD----Gr~lyv~~-~dg~V~viD~~~~t~~~v~~i~~G~~-P~~ia~s~~~~pDGk~l~v~n~~~~~v~Vi  271 (567)
T 1qks_A          198 AVHISRLSAS----GRYLFVIG-RDGKVNMIDLWMKEPTTVAEIKIGSE-ARSIETSKMEGWEDKYAIAGAYWPPQYVIM  271 (567)
T ss_dssp             CEEEEEECTT----SCEEEEEE-TTSEEEEEETTSSSCCEEEEEECCSE-EEEEEECCSTTCTTTEEEEEEEETTEEEEE
T ss_pred             CccceEECCC----CCEEEEEc-CCCeEEEEECCCCCCcEeEEEecCCC-CceeEEccccCCCCCEEEEEEccCCeEEEE
Confidence            4568899999    77777766 69999999996  7777777764333 4577 88    6998877665 66999999


Q ss_pred             eCCCCceeeEec
Q psy14456         77 DLRTRGCTNVLT   88 (93)
Q Consensus        77 d~~~~~~~~~~~   88 (93)
                      |..+.+.++.+.
T Consensus       272 D~~t~~~~~~i~  283 (567)
T 1qks_A          272 DGETLEPKKIQS  283 (567)
T ss_dssp             ETTTCCEEEEEE
T ss_pred             ECCCCcEEEEEe
Confidence            999888777664

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=98.17  E-value=0.00011  Score=41.90  Aligned_cols=80  Identities=13%  Similarity=0.150  Sum_probs=57.5

Q ss_pred             ceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeec----------cccceEEE-EecC-CCEEEEecCCCc
Q psy14456          5 TVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSG----------HSGHVLSL-YNWG-GATVLSGSHDRT   72 (93)
Q Consensus         5 ~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~----------~~~~v~~~-~~~~-~~~~~s~~~~~~   72 (93)
                      ....++++|+.   +..+++.+..++.|.+|+ ..+..+..+..          +-.....+ ++++ +.++++...++.
T Consensus       144 ~P~~ia~~~~~---g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~  219 (329)
T 3fvz_A          144 QPTDVAVEPST---GAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGR  219 (329)
T ss_dssp             SEEEEEECTTT---CCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTE
T ss_pred             CCcEEEEeCCC---CeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCE
Confidence            56789999831   566666531489999999 55666655532          22336788 9997 778888888999


Q ss_pred             EEEEeCCCCceeeEec
Q psy14456         73 VRFWDLRTRGCTNVLT   88 (93)
Q Consensus        73 i~~~d~~~~~~~~~~~   88 (93)
                      |.+||..+++.+..+.
T Consensus       220 I~~~~~~~G~~~~~~~  235 (329)
T 3fvz_A          220 IQCFKTDTKEFVREIK  235 (329)
T ss_dssp             EEEEETTTCCEEEEEC
T ss_pred             EEEEECCCCcEEEEEe
Confidence            9999999888777663

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=98.16  E-value=6.2e-05  Score=41.84  Aligned_cols=71  Identities=17%  Similarity=0.215  Sum_probs=50.9

Q ss_pred             cceeEEEEEecCCCCcceEEEeeeCCC-eEEEEeCCCCceeEEeeccc--cceEEE-EecCCCEEEEecCCCcEEEEeCC
Q psy14456          4 GTVRDVCFIEDTSNKSSLLISGGAGDC-KIYVTDCATGQAFQALSGHS--GHVLSL-YNWGGATVLSGSHDRTVRFWDLR   79 (93)
Q Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~g~~~~-~v~~~~~~~~~~~~~~~~~~--~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~   79 (93)
                      .....++++++    +..+++.. .++ .|.+|+. .+..+..+..+.  ..+..+ +.+++.++++ +.++.|.+|++.
T Consensus       207 ~~p~~i~~d~~----G~l~v~~~-~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~  279 (286)
T 1q7f_A          207 NYPIGVGINSN----GEILIADN-HNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYV  279 (286)
T ss_dssp             CSEEEEEECTT----CCEEEEEC-SSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECS
T ss_pred             CCCcEEEECCC----CCEEEEeC-CCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcc
Confidence            35678899887    66666654 365 9999995 455565554433  235678 9999987777 568999999986


Q ss_pred             CC
Q psy14456         80 TR   81 (93)
Q Consensus        80 ~~   81 (93)
                      ..
T Consensus       280 ~~  281 (286)
T 1q7f_A          280 QL  281 (286)
T ss_dssp             CC
T ss_pred             cc
Confidence            54

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=98.14  E-value=0.00012  Score=41.84  Aligned_cols=79  Identities=20%  Similarity=0.138  Sum_probs=58.7

Q ss_pred             cceeEEEEEecCCCCcceEEEeeeCC------------------------CeEEEEeCCCCceeEEee-ccccceEEE-E
Q psy14456          4 GTVRDVCFIEDTSNKSSLLISGGAGD------------------------CKIYVTDCATGQAFQALS-GHSGHVLSL-Y   57 (93)
Q Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~g~~~------------------------~~v~~~~~~~~~~~~~~~-~~~~~v~~~-~   57 (93)
                      +.+.+++++|+    ++.+++.. .+                        +.|.+||..+++.+..+. ++-.....+ +
T Consensus        24 ~~v~~va~d~~----G~l~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~   98 (329)
T 3fvz_A           24 GQVSGVALDSK----NNLVIFHR-GDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSI   98 (329)
T ss_dssp             SCEEEEEECTT----CCEEEEEC-TTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEE
T ss_pred             CCceEEEECCC----CCEEEEeC-CCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEE
Confidence            56899999998    67666544 34                        379999998888776554 344566788 9


Q ss_pred             ecCCCEEEEecCCCcEEEEeCCCCc-eeeEe
Q psy14456         58 NWGGATVLSGSHDRTVRFWDLRTRG-CTNVL   87 (93)
Q Consensus        58 ~~~~~~~~s~~~~~~i~~~d~~~~~-~~~~~   87 (93)
                      ++++.++++...++.|.+||..... .+..+
T Consensus        99 d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~  129 (329)
T 3fvz_A           99 DTDGNYWVTDVALHQVFKLDPHSKEGPLLIL  129 (329)
T ss_dssp             CTTSCEEEEETTTTEEEEECTTCSSCCSEEE
T ss_pred             CCCCCEEEEECCCCEEEEEeCCCCeEEEEEe
Confidence            9999988888889999999976442 34444

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=98.11  E-value=1.7e-05  Score=49.48  Aligned_cols=74  Identities=12%  Similarity=0.086  Sum_probs=52.6

Q ss_pred             ccceeEEEEEecCCCCcceEEEe----eeCCCeEEEEeCCCCcee-EE-eeccccceEEE-EecCCCEEEEecCCCc---
Q psy14456          3 DGTVRDVCFIEDTSNKSSLLISG----GAGDCKIYVTDCATGQAF-QA-LSGHSGHVLSL-YNWGGATVLSGSHDRT---   72 (93)
Q Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~----g~~~~~v~~~~~~~~~~~-~~-~~~~~~~v~~~-~~~~~~~~~s~~~~~~---   72 (93)
                      +..+..++|+|+    +++++-+    |+++..|++||+.+++.+ .. +...  ....+ |+|+++.++..+.+..   
T Consensus       120 ~~~~~~~~~SPD----G~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~--~~~~~~wspDg~~l~~~~~d~~~~~  193 (695)
T 2bkl_A          120 TVSLGTWAVSWD----GKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGG--KYATPKWTPDSKGFYYEWLPTDPSI  193 (695)
T ss_dssp             CEEEEEEEECTT----SSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCC--TTCCCEECTTSSEEEEEECCCCTTS
T ss_pred             CEEEEEEEECCC----CCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcc--cccceEEecCCCEEEEEEecCCCCC
Confidence            346889999999    6766633    333468999999998765 21 1111  11456 9999999988877665   


Q ss_pred             ----------EEEEeCCCCc
Q psy14456         73 ----------VRFWDLRTRG   82 (93)
Q Consensus        73 ----------i~~~d~~~~~   82 (93)
                                |.+|++.++.
T Consensus       194 ~~~~~~~~~~v~~~~l~t~~  213 (695)
T 2bkl_A          194 KVDERPGYTTIRYHTLGTEP  213 (695)
T ss_dssp             CGGGGGGGCEEEEEETTSCG
T ss_pred             ccccCCCCCEEEEEECCCCc
Confidence                      9999998876

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=98.06  E-value=0.00026  Score=39.30  Aligned_cols=78  Identities=14%  Similarity=0.261  Sum_probs=55.0

Q ss_pred             cceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeecc--ccceEEE-EecCCCEEEEecCCC-cEEEEeCC
Q psy14456          4 GTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGH--SGHVLSL-YNWGGATVLSGSHDR-TVRFWDLR   79 (93)
Q Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~--~~~v~~~-~~~~~~~~~s~~~~~-~i~~~d~~   79 (93)
                      ..+..++++++    +..+++.. .++.|.+|+.. +..+..+...  ...+..+ +++++.++++...++ .|.+||. 
T Consensus       164 ~~p~~i~~~~~----g~l~v~~~-~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-  236 (286)
T 1q7f_A          164 EFPNGVVVNDK----QEIFISDN-RAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-  236 (286)
T ss_dssp             SSEEEEEECSS----SEEEEEEG-GGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-
T ss_pred             CCcEEEEECCC----CCEEEEEC-CCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-
Confidence            35778899887    56655544 58999999974 4555555432  3566788 999999888887775 9999995 


Q ss_pred             CCceeeEec
Q psy14456         80 TRGCTNVLT   88 (93)
Q Consensus        80 ~~~~~~~~~   88 (93)
                      ++..+..+.
T Consensus       237 ~g~~~~~~~  245 (286)
T 1q7f_A          237 DGQLISALE  245 (286)
T ss_dssp             TSCEEEEEE
T ss_pred             CCCEEEEEc
Confidence            455555543

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=97.98  E-value=0.00016  Score=40.59  Aligned_cols=67  Identities=15%  Similarity=0.093  Sum_probs=51.4

Q ss_pred             cceEEEeeeCCCeEEEEeCCCCceeEEeeccc-cceEEE-EecCCCEEEEecCCCcEEEEeCCCCceeeEecC
Q psy14456         19 SSLLISGGAGDCKIYVTDCATGQAFQALSGHS-GHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRGCTNVLTP   89 (93)
Q Consensus        19 ~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~-~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~   89 (93)
                      ++.+++. +.++.|.+||.++++.+..+..+. ..+..+ +.++++++++  .+..+..||. +++.+..+..
T Consensus         5 ~~~lv~~-~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilvs--~~~~V~~~d~-~G~~~W~~~~   73 (276)
T 3no2_A            5 QHLLVGG-SGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFS--YSKGAKMITR-DGRELWNIAA   73 (276)
T ss_dssp             CEEEEEC-TTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEEE--CBSEEEEECT-TSCEEEEEEC
T ss_pred             CcEEEee-CCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEEe--CCCCEEEECC-CCCEEEEEcC
Confidence            3555554 469999999999999998887655 456777 8999998883  4678999998 7777666653

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=97.97  E-value=0.00023  Score=43.96  Aligned_cols=68  Identities=16%  Similarity=0.055  Sum_probs=52.3

Q ss_pred             ceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCC--CCceeeEec
Q psy14456         20 SLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLR--TRGCTNVLT   88 (93)
Q Consensus        20 ~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~--~~~~~~~~~   88 (93)
                      +.++.+...++.|.++|..+++.+..+.... .+..+ |+++++++++++.++.+.+||+.  +++.+..+.
T Consensus       167 ~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~-~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~  237 (567)
T 1qks_A          167 NLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIK  237 (567)
T ss_dssp             GEEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEE
T ss_pred             ceEEEEeCCCCeEEEEECCCCeEEEEEeCCC-CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEe
Confidence            3444445569999999999999888776332 34577 99999999988899999999996  666665554

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=97.95  E-value=0.00037  Score=40.78  Aligned_cols=58  Identities=12%  Similarity=0.083  Sum_probs=46.5

Q ss_pred             CCeEEEEeCCCCceeEEeeccccceEEE-EecCCC-EEEEec-CCCcEEEEeCCCCceeeEe
Q psy14456         29 DCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGA-TVLSGS-HDRTVRFWDLRTRGCTNVL   87 (93)
Q Consensus        29 ~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~-~~~s~~-~~~~i~~~d~~~~~~~~~~   87 (93)
                      .+.|.+.|..+++.+..+.. ......+ |+++++ .++++. .++.+.++|..+++.+..+
T Consensus       297 ~~~V~VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i  357 (373)
T 2mad_H          297 AKEVTSVTGLVGQTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST  357 (373)
T ss_pred             CCeEEEEECCCCEEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence            35799999999998887753 2345678 999998 777776 5899999999999888773

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=97.91  E-value=0.0006  Score=38.37  Aligned_cols=79  Identities=13%  Similarity=0.006  Sum_probs=56.0

Q ss_pred             eeEEEEEecCCCCcceEEEeeeCCCeEEEEeC--CCCce-----eEEeeccccceEEE-EecCCCEEEEecCCCcEEEEe
Q psy14456          6 VRDVCFIEDTSNKSSLLISGGAGDCKIYVTDC--ATGQA-----FQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWD   77 (93)
Q Consensus         6 v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~~~-----~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d   77 (93)
                      ...++|+|+    ++.++.+...++.|..|++  .++..     ...+.........+ +.+++++.++...++.|..||
T Consensus       151 pngi~~spd----g~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d  226 (297)
T 3g4e_A          151 SNGLDWSLD----HKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLD  226 (297)
T ss_dssp             EEEEEECTT----SCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEEC
T ss_pred             ccceEEcCC----CCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEc
Confidence            467889988    6656555556889999986  44432     12222333456677 889999888887788899999


Q ss_pred             CCCCceeeEec
Q psy14456         78 LRTRGCTNVLT   88 (93)
Q Consensus        78 ~~~~~~~~~~~   88 (93)
                      ..+++.+..+.
T Consensus       227 ~~tG~~~~~i~  237 (297)
T 3g4e_A          227 PVTGKRLQTVK  237 (297)
T ss_dssp             TTTCCEEEEEE
T ss_pred             CCCceEEEEEE
Confidence            98888776664

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=97.91  E-value=0.00038  Score=40.08  Aligned_cols=76  Identities=14%  Similarity=-0.068  Sum_probs=53.2

Q ss_pred             eeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE---EecCCCEEEEe---------------
Q psy14456          6 VRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL---YNWGGATVLSG---------------   67 (93)
Q Consensus         6 v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~---~~~~~~~~~s~---------------   67 (93)
                      +....|+|+    ++.++.+. .+..+.+||+.+++.......+...+...   +++++..++..               
T Consensus        83 ~~~~~~spd----g~~l~~~~-~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~  157 (388)
T 3pe7_A           83 TFGGFLSPD----DDALFYVK-DGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKK  157 (388)
T ss_dssp             SSSCEECTT----SSEEEEEE-TTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHH
T ss_pred             ccceEEcCC----CCEEEEEe-CCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccch
Confidence            346789999    77777766 48899999999988766555555444333   47788877632               


Q ss_pred             -------cCCCcEEEEeCCCCceeeE
Q psy14456         68 -------SHDRTVRFWDLRTRGCTNV   86 (93)
Q Consensus        68 -------~~~~~i~~~d~~~~~~~~~   86 (93)
                             ..+..+.+||+.+++....
T Consensus       158 ~~~~~~~~~~~~l~~~d~~~g~~~~l  183 (388)
T 3pe7_A          158 FHEFYFTKPCCRLMRVDLKTGESTVI  183 (388)
T ss_dssp             HHHHGGGCCCEEEEEEETTTCCEEEE
T ss_pred             hhhhhccCCcceEEEEECCCCceEEe
Confidence                   2446789999998865443

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=97.90  E-value=0.00031  Score=41.22  Aligned_cols=78  Identities=10%  Similarity=0.058  Sum_probs=56.1

Q ss_pred             EEEEecCCCCcceEEEeee---C-----CCeEEEEeCCCCceeEEeeccccceEEE-EecCCC-EEEEec-CCCcEEEEe
Q psy14456          9 VCFIEDTSNKSSLLISGGA---G-----DCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGA-TVLSGS-HDRTVRFWD   77 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~g~---~-----~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~-~~~s~~-~~~~i~~~d   77 (93)
                      +.++|+    ++.++.+..   .     +..+.++|..+.+.+..+.... ....+ |++++. ++++.. .++.+.++|
T Consensus       269 v~~s~d----g~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID  343 (368)
T 1mda_H          269 VAKLKN----TDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYD  343 (368)
T ss_dssp             EEEETT----TTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred             eEEcCC----CCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEE
Confidence            578888    455544321   1     1345599999999888775333 45677 999886 566776 699999999


Q ss_pred             CCCCceeeEecCcc
Q psy14456         78 LRTRGCTNVLTPIT   91 (93)
Q Consensus        78 ~~~~~~~~~~~~~~   91 (93)
                      ..+++.+..+....
T Consensus       344 ~~t~kvv~~I~vg~  357 (368)
T 1mda_H          344 AASDQDQSSVELDK  357 (368)
T ss_dssp             SSSCEEEEECCCCS
T ss_pred             CCCCcEEEEEECCC
Confidence            99999988886543

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=97.89  E-value=0.00047  Score=38.54  Aligned_cols=76  Identities=16%  Similarity=0.127  Sum_probs=52.1

Q ss_pred             ceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCC-CCce---eEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCC
Q psy14456          5 TVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCA-TGQA---FQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLR   79 (93)
Q Consensus         5 ~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~-~~~~---~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~   79 (93)
                      ....++|+|+    ++.+ .+...++.|.+|++. .+..   ...+..+...+..+ +++++.++++.  ++.|.+||..
T Consensus       173 ~~~gi~~s~d----g~~l-v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~  245 (296)
T 3e5z_A          173 KPNGLAFLPS----GNLL-VSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD  245 (296)
T ss_dssp             SEEEEEECTT----SCEE-EEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT
T ss_pred             CCccEEECCC----CCEE-EEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC
Confidence            4578899998    6766 444458899999986 4443   22332233445567 89999877766  7889999986


Q ss_pred             CCceeeEec
Q psy14456         80 TRGCTNVLT   88 (93)
Q Consensus        80 ~~~~~~~~~   88 (93)
                       ++.+..+.
T Consensus       246 -g~~~~~~~  253 (296)
T 3e5z_A          246 -GDELGRVL  253 (296)
T ss_dssp             -SCEEEEEE
T ss_pred             -CCEEEEEE
Confidence             65555554

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=97.88  E-value=0.00012  Score=43.34  Aligned_cols=77  Identities=16%  Similarity=0.063  Sum_probs=56.1

Q ss_pred             EEEEEecCCCCcceEEEee---------eCCCeEEEEeCCCCceeEEeeccc-------cceEEE-EecCCCEEEEecC-
Q psy14456          8 DVCFIEDTSNKSSLLISGG---------AGDCKIYVTDCATGQAFQALSGHS-------GHVLSL-YNWGGATVLSGSH-   69 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~g---------~~~~~v~~~~~~~~~~~~~~~~~~-------~~v~~~-~~~~~~~~~s~~~-   69 (93)
                      .+.++|+    ++.++.+.         .+++.|.+||..+.+.+..+.-..       .....+ |+++++.+...+. 
T Consensus        82 ~va~spD----G~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~  157 (386)
T 3sjl_D           82 NPVVADD----GSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS  157 (386)
T ss_dssp             EEEECTT----SSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECS
T ss_pred             cEEECCC----CCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcC
Confidence            4889999    56555443         136789999999998887764211       123456 8999998877653 


Q ss_pred             -CCcEEEEeCCCCceeeEec
Q psy14456         70 -DRTVRFWDLRTRGCTNVLT   88 (93)
Q Consensus        70 -~~~i~~~d~~~~~~~~~~~   88 (93)
                       ++.+.++|..+++.+..+.
T Consensus       158 ~~~~VsVID~~t~~vv~tI~  177 (386)
T 3sjl_D          158 PAPAVGVVDLEGKAFKRMLD  177 (386)
T ss_dssp             SSCEEEEEETTTTEEEEEEE
T ss_pred             CCCeEEEEECCCCcEEEEEE
Confidence             6899999999998877764

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=97.84  E-value=0.00034  Score=39.26  Aligned_cols=67  Identities=10%  Similarity=0.102  Sum_probs=53.2

Q ss_pred             cceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCCCceeeEec
Q psy14456         19 SSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRGCTNVLT   88 (93)
Q Consensus        19 ~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~   88 (93)
                      ++.+++.. .++.|..||.+ ++.+..+... ...... ..+++..++++..++.+..+|..+|+.+..+.
T Consensus       136 G~~lv~~~-~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~  203 (276)
T 3no2_A          136 GNYLVPLF-ATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVN  203 (276)
T ss_dssp             SCEEEEET-TTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEE
T ss_pred             CCEEEEec-CCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEec
Confidence            66777655 59999999988 8888777643 334456 77889999988888899999999998887775

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=97.83  E-value=0.0008  Score=37.66  Aligned_cols=73  Identities=18%  Similarity=0.199  Sum_probs=53.3

Q ss_pred             cceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCC-EEEEecCCCcEEEEeCCCC
Q psy14456          4 GTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGA-TVLSGSHDRTVRFWDLRTR   81 (93)
Q Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~-~~~s~~~~~~i~~~d~~~~   81 (93)
                      .....++++++    +..+++.. .++.|..|+.++++.+..+..+...+.++ +++++. ++++...++.+..|++...
T Consensus       226 ~~p~~i~~d~~----G~l~v~~~-~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~  300 (314)
T 1pjx_A          226 GGADGMDFDED----NNLLVANW-GSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             CEEEEEEEBTT----CCEEEEEE-TTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             CCCCceEECCC----CCEEEEEc-CCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence            34567777776    66666654 47899999988777666665555677888 989888 5566667788999998753

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=97.81  E-value=8.3e-05  Score=43.33  Aligned_cols=66  Identities=17%  Similarity=0.127  Sum_probs=42.4

Q ss_pred             cceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCCCceeeEe
Q psy14456         19 SSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRGCTNVL   87 (93)
Q Consensus        19 ~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~   87 (93)
                      +..+++++ .++.+..||..+++.+..+..  +.+.+. +..++..+++++.|+.+..||.++|+.+..+
T Consensus         9 ~~~v~~gs-~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~   75 (369)
T 2hz6_A            9 ETLLFVST-LDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKL   75 (369)
T ss_dssp             TTEEEEEE-TTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEEC
T ss_pred             CCEEEEEc-CCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeee
Confidence            45566655 599999999999998877765  444444 5556777788889999999999888765544

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=97.78  E-value=0.0012  Score=37.70  Aligned_cols=76  Identities=11%  Similarity=0.064  Sum_probs=54.4

Q ss_pred             eeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCCCcee
Q psy14456          6 VRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRGCT   84 (93)
Q Consensus         6 v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~~~   84 (93)
                      ...+.+..     +..+++.. .++.|.++|..+++.+..+.. ......+ +++++.++++...++.+.+||..+++..
T Consensus        46 ~~~i~~~~-----~~lyv~~~-~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~  118 (328)
T 3dsm_A           46 AQSMVIRD-----GIGWIVVN-NSHVIFAIDINTFKEVGRITG-FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEIT  118 (328)
T ss_dssp             EEEEEEET-----TEEEEEEG-GGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEE
T ss_pred             ceEEEEEC-----CEEEEEEc-CCCEEEEEECcccEEEEEcCC-CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEE
Confidence            34555532     34445544 589999999999998887753 3455677 8788865555557899999999998877


Q ss_pred             eEec
Q psy14456         85 NVLT   88 (93)
Q Consensus        85 ~~~~   88 (93)
                      ..+.
T Consensus       119 ~~i~  122 (328)
T 3dsm_A          119 GYIE  122 (328)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6654

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=97.75  E-value=0.00045  Score=43.33  Aligned_cols=70  Identities=13%  Similarity=0.117  Sum_probs=48.3

Q ss_pred             eeEEEEEecCCCCcceEEEeeeCCCe----------------EEEEeCCCCce--eEEee--ccccceEEE-EecCCCEE
Q psy14456          6 VRDVCFIEDTSNKSSLLISGGAGDCK----------------IYVTDCATGQA--FQALS--GHSGHVLSL-YNWGGATV   64 (93)
Q Consensus         6 v~~~~~~~~~~~~~~~~~~~g~~~~~----------------v~~~~~~~~~~--~~~~~--~~~~~v~~~-~~~~~~~~   64 (93)
                      +..++|+|+    ++.++.+.. +..                |.+|++.++..  ...+.  .+......+ |++++..+
T Consensus       173 ~~~~~wspD----g~~l~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l  247 (710)
T 2xdw_A          173 FSCMAWTHD----GKGMFYNAY-PQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYV  247 (710)
T ss_dssp             SCCEEECTT----SSEEEEEEC-CCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEE
T ss_pred             cceEEEEeC----CCEEEEEEE-CCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEE
Confidence            567899999    666666553 443                99999987753  22222  234456677 99999988


Q ss_pred             EEecC-----CCcEEEEeCCC
Q psy14456         65 LSGSH-----DRTVRFWDLRT   80 (93)
Q Consensus        65 ~s~~~-----~~~i~~~d~~~   80 (93)
                      +..+.     +..+.+||+.+
T Consensus       248 ~~~~~~~~~~~~~l~~~d~~~  268 (710)
T 2xdw_A          248 LLSIREGCDPVNRLWYCDLQQ  268 (710)
T ss_dssp             EEEEECSSSSCCEEEEEEGGG
T ss_pred             EEEEEccCCCccEEEEEECcc
Confidence            76543     57899999876

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=97.74  E-value=0.0013  Score=36.82  Aligned_cols=78  Identities=8%  Similarity=0.115  Sum_probs=52.9

Q ss_pred             eeEEEEE----ecCCCCcceEEEeeeCCCeEEEEeCC-CCc-----eeEEeeccc-cceEEE-EecCCCEEEEecCCCcE
Q psy14456          6 VRDVCFI----EDTSNKSSLLISGGAGDCKIYVTDCA-TGQ-----AFQALSGHS-GHVLSL-YNWGGATVLSGSHDRTV   73 (93)
Q Consensus         6 v~~~~~~----~~~~~~~~~~~~~g~~~~~v~~~~~~-~~~-----~~~~~~~~~-~~v~~~-~~~~~~~~~s~~~~~~i   73 (93)
                      ...++|+    |+    ++.++.+...++.|.+|+.+ .+.     ....+..+. .....+ +++++.++++...++.|
T Consensus       174 ~~~i~~~~~~d~d----g~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i  249 (314)
T 1pjx_A          174 PNGIAVRHMNDGR----PYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHI  249 (314)
T ss_dssp             EEEEEEEECTTSC----EEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEE
T ss_pred             cceEEEecccCCC----CCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEE
Confidence            4677888    87    55555544457899999876 343     222333333 456678 89999988887778899


Q ss_pred             EEEeCCCCceeeEe
Q psy14456         74 RFWDLRTRGCTNVL   87 (93)
Q Consensus        74 ~~~d~~~~~~~~~~   87 (93)
                      .+||..+++....+
T Consensus       250 ~~~d~~~g~~~~~~  263 (314)
T 1pjx_A          250 EVFGPDGGQPKMRI  263 (314)
T ss_dssp             EEECTTCBSCSEEE
T ss_pred             EEEcCCCCcEeEEE
Confidence            99998866655444

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=97.73  E-value=0.00025  Score=44.69  Aligned_cols=72  Identities=15%  Similarity=0.095  Sum_probs=49.3

Q ss_pred             ceeEEEEEecCCCCcceEEEeeeCCC----eEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCC--------
Q psy14456          5 TVRDVCFIEDTSNKSSLLISGGAGDC----KIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDR--------   71 (93)
Q Consensus         5 ~v~~~~~~~~~~~~~~~~~~~g~~~~----~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~--------   71 (93)
                      .+..++|+|+    +++++.+.+++|    .|++||+.+++.+.... ....+..+ |+|+ ..++....+.        
T Consensus       164 ~~~~~~~SPD----G~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~-~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~  237 (741)
T 1yr2_A          164 ALDAWAASDD----GRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL-KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQ  237 (741)
T ss_dssp             EEEEEEECTT----SSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE-EEEESCCCEESTT-SEEEEEECCCC-------
T ss_pred             EEEeEEECCC----CCEEEEEEcCCCCceEEEEEEECCCCCCCCccC-CCceeccEEEECC-CEEEEEEecCcccccccc
Confidence            5778999999    677766554334    59999999988754321 11222356 9999 8887666544        


Q ss_pred             ------cEEEEeCCCCc
Q psy14456         72 ------TVRFWDLRTRG   82 (93)
Q Consensus        72 ------~i~~~d~~~~~   82 (93)
                            .|.+|++.++.
T Consensus       238 ~~~~~~~v~~~~lgt~~  254 (741)
T 1yr2_A          238 ALNYNQTVWLHRLGTPQ  254 (741)
T ss_dssp             -CCCCCEEEEEETTSCG
T ss_pred             cCCCCCEEEEEECCCCc
Confidence                  38889987765

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=97.72  E-value=0.0011  Score=38.79  Aligned_cols=74  Identities=9%  Similarity=-0.111  Sum_probs=53.5

Q ss_pred             EEEEEecCCCCcceEEEeee---------CCCeEEEEeCCCCceeEEeecc-------ccceEEE-EecCCCEEEEecC-
Q psy14456          8 DVCFIEDTSNKSSLLISGGA---------GDCKIYVTDCATGQAFQALSGH-------SGHVLSL-YNWGGATVLSGSH-   69 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~g~---------~~~~v~~~~~~~~~~~~~~~~~-------~~~v~~~-~~~~~~~~~s~~~-   69 (93)
                      .+.++|+    ++.++.+..         .++.+.++|..+.+.+..+.--       ......+ ++|+++.++.++. 
T Consensus        70 ~i~~spD----g~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~  145 (373)
T 2mad_H           70 NPVAAHS----GSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFA  145 (373)
T ss_pred             CeEECCC----CCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecC
Confidence            7889999    676666542         3678999999888777655321       1223466 8999998887763 


Q ss_pred             -CCcEEEEeCCCCceeeE
Q psy14456         70 -DRTVRFWDLRTRGCTNV   86 (93)
Q Consensus        70 -~~~i~~~d~~~~~~~~~   86 (93)
                       +..|.++| .+++....
T Consensus       146 ~~~~v~viD-~t~~~~~~  162 (373)
T 2mad_H          146 AGPAVGLVV-QGGSSDDQ  162 (373)
T ss_pred             CCCeEEEEE-CCCCEEeE
Confidence             57899999 98887666

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=97.72  E-value=0.00049  Score=37.76  Aligned_cols=75  Identities=4%  Similarity=-0.068  Sum_probs=53.4

Q ss_pred             cceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCCCc
Q psy14456          4 GTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRG   82 (93)
Q Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~   82 (93)
                      ..+..+++.++    +..+++.. .++.|.+|+............+...+..+ +.+++.++++...++.|.++++...+
T Consensus       192 ~~p~~i~~d~~----g~l~v~~~-~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          192 TAPWGIAVDEA----GTVYVTEH-NTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH  266 (270)
T ss_dssp             CSEEEEEECTT----CCEEEEET-TTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred             CCceEEEECCC----CCEEEEEC-CCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence            34678888887    65555544 48899999987654433222333556788 99999988888899999999987654


Q ss_pred             e
Q psy14456         83 C   83 (93)
Q Consensus        83 ~   83 (93)
                      .
T Consensus       267 ~  267 (270)
T 1rwi_B          267 H  267 (270)
T ss_dssp             S
T ss_pred             c
Confidence            3

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=97.72  E-value=0.0013  Score=39.43  Aligned_cols=74  Identities=12%  Similarity=0.093  Sum_probs=55.6

Q ss_pred             EEEEecCCCCcceEEEee-e--------CCCeEEEEeCCCCceeEEeeccccceEEE-EecCCC-EEEEec-CCCcEEEE
Q psy14456          9 VCFIEDTSNKSSLLISGG-A--------GDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGA-TVLSGS-HDRTVRFW   76 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~g-~--------~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~-~~~s~~-~~~~i~~~   76 (93)
                      ++++|+    ++.++... .        .++.|.+.|..+.+.+..+..-. ....+ |+++++ .+++.. .++.+.++
T Consensus       324 va~s~d----g~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~-~P~gia~spDg~~~lyv~n~~s~~VsVI  398 (426)
T 3c75_H          324 TAYHRQ----SDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH-EIDSINVSQDAEPLLYALSAGTQTLHIY  398 (426)
T ss_dssp             EEEEGG----GTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-EECEEEECCSSSCEEEEEETTTTEEEEE
T ss_pred             eEEcCC----CCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC-CcCeEEEccCCCEEEEEEcCCCCeEEEE
Confidence            577887    45444432 1        13579999999999988875322 35677 999988 777777 68999999


Q ss_pred             eCCCCceeeEe
Q psy14456         77 DLRTRGCTNVL   87 (93)
Q Consensus        77 d~~~~~~~~~~   87 (93)
                      |..+++.++.+
T Consensus       399 D~~t~kvv~tI  409 (426)
T 3c75_H          399 DAATGEELRSV  409 (426)
T ss_dssp             ETTTCCEEEEE
T ss_pred             ECCCCCEEEEe
Confidence            99999998886

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.71  E-value=0.0003  Score=40.46  Aligned_cols=76  Identities=11%  Similarity=0.030  Sum_probs=47.7

Q ss_pred             cceeEEEEEe-cCCCCcceEEEeeeC-C----CeEEEEeCCCCceeEEeecc--ccceEEE-EecCCCEEEEecCC----
Q psy14456          4 GTVRDVCFIE-DTSNKSSLLISGGAG-D----CKIYVTDCATGQAFQALSGH--SGHVLSL-YNWGGATVLSGSHD----   70 (93)
Q Consensus         4 ~~v~~~~~~~-~~~~~~~~~~~~g~~-~----~~v~~~~~~~~~~~~~~~~~--~~~v~~~-~~~~~~~~~s~~~~----   70 (93)
                      ..+..+.|+| +    +..++..... .    ..|.+|++..+.... +..+  ...+..+ |+|++..++..+.+    
T Consensus       188 ~~~~~~~~sp~d----g~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~  262 (396)
T 3c5m_A          188 AWLGHPIYRPFD----DSTVGFCHEGPHDLVDARMWLVNEDGSNVRK-IKEHAEGESCTHEFWIPDGSAMAYVSYFKGQT  262 (396)
T ss_dssp             SCEEEEEEETTE----EEEEEEEECSCSSSCSCCCEEEETTSCCCEE-SSCCCTTEEEEEEEECTTSSCEEEEEEETTTC
T ss_pred             cccccceECCCC----CCEEEEEecCCCCCCCceEEEEECCCCceeE-eeccCCCccccceEECCCCCEEEEEecCCCCc
Confidence            4577889999 6    5555443321 2    468888887655333 3223  2346677 99999876655332    


Q ss_pred             -CcEEEEeCCCCcee
Q psy14456         71 -RTVRFWDLRTRGCT   84 (93)
Q Consensus        71 -~~i~~~d~~~~~~~   84 (93)
                       +.+.+||+.+++..
T Consensus       263 ~~~l~~~d~~~g~~~  277 (396)
T 3c5m_A          263 DRVIYKANPETLENE  277 (396)
T ss_dssp             CEEEEEECTTTCCEE
T ss_pred             cceEEEEECCCCCeE
Confidence             34999999887643

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=97.62  E-value=0.00052  Score=42.96  Aligned_cols=71  Identities=11%  Similarity=0.008  Sum_probs=48.0

Q ss_pred             eEEEEEecCCCCcceEEEeeeCCCe-------------EEEEeCCCCc----eeEEeeccccceEEE-EecCCCEEEEec
Q psy14456          7 RDVCFIEDTSNKSSLLISGGAGDCK-------------IYVTDCATGQ----AFQALSGHSGHVLSL-YNWGGATVLSGS   68 (93)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~g~~~~~-------------v~~~~~~~~~----~~~~~~~~~~~v~~~-~~~~~~~~~s~~   68 (93)
                      ..++|+|+    ++.++.+.. +..             |++|++.++.    .+.....+...+..+ |+++++.++..+
T Consensus       171 ~~~~wspD----g~~l~~~~~-d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~  245 (695)
T 2bkl_A          171 ATPKWTPD----SKGFYYEWL-PTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYI  245 (695)
T ss_dssp             CCCEECTT----SSEEEEEEC-CCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEE
T ss_pred             cceEEecC----CCEEEEEEe-cCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEE
Confidence            67899999    677766653 444             9999998775    233333444567788 999998887665


Q ss_pred             CCC----cEEEEeCCCCc
Q psy14456         69 HDR----TVRFWDLRTRG   82 (93)
Q Consensus        69 ~~~----~i~~~d~~~~~   82 (93)
                      .++    .+.+++..++.
T Consensus       246 ~~~~~~~~l~~~~~~~~~  263 (695)
T 2bkl_A          246 LRGWSENDVYWKRPGEKD  263 (695)
T ss_dssp             EETTTEEEEEEECTTCSS
T ss_pred             eCCCCceEEEEEcCCCCc
Confidence            444    66666665443

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=97.61  E-value=0.00082  Score=42.39  Aligned_cols=60  Identities=18%  Similarity=-0.012  Sum_probs=45.9

Q ss_pred             CeEEEEeCCCCceeEEeeccccceEEEEecCCCEEEEecCCCcEEEEeCCCCceeeEecC
Q psy14456         30 CKIYVTDCATGQAFQALSGHSGHVLSLYNWGGATVLSGSHDRTVRFWDLRTRGCTNVLTP   89 (93)
Q Consensus        30 ~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~   89 (93)
                      +.+..||+.+++.+-....+.......+...+.+++.++.|+.++.||.++|+.+..+..
T Consensus       455 g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~  514 (689)
T 1yiq_A          455 GKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPA  514 (689)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             eeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeC
Confidence            779999999999877665433221112455677888899999999999999999887753

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=97.54  E-value=0.0011  Score=37.70  Aligned_cols=58  Identities=17%  Similarity=0.263  Sum_probs=40.6

Q ss_pred             eeEEEEEecCCCCcceEEEeeeC--------------------------CCeEEEEeCCCCceeEEeeccccceEEE-Ee
Q psy14456          6 VRDVCFIEDTSNKSSLLISGGAG--------------------------DCKIYVTDCATGQAFQALSGHSGHVLSL-YN   58 (93)
Q Consensus         6 v~~~~~~~~~~~~~~~~~~~g~~--------------------------~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~   58 (93)
                      +..+.|+|+    ++.++.+...                          ...|.+|++.+++.+..+.. . .+..+ |+
T Consensus       106 ~~~~~wspd----g~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~s  179 (347)
T 2gop_A          106 IRSLEWNED----SRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWH  179 (347)
T ss_dssp             EEEEEECTT----SSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEE
T ss_pred             ccceeECCC----CCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCC
Confidence            778999999    6666665422                          25688899988876444544 3 66777 99


Q ss_pred             cCCCEEEEecCC
Q psy14456         59 WGGATVLSGSHD   70 (93)
Q Consensus        59 ~~~~~~~s~~~~   70 (93)
                      |++ .++++..+
T Consensus       180 pdg-~~~~~~~~  190 (347)
T 2gop_A          180 RDK-IVVNVPHR  190 (347)
T ss_dssp             TTE-EEEEEECC
T ss_pred             CCe-EEEEEecc
Confidence            999 77766543

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=97.54  E-value=0.0021  Score=35.23  Aligned_cols=73  Identities=4%  Similarity=0.009  Sum_probs=52.0

Q ss_pred             ceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCCCc
Q psy14456          5 TVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRG   82 (93)
Q Consensus         5 ~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~   82 (93)
                      .+..++++++    +..+++.. .++.|.+|+...................+ +++++.++++...++.+.+||.....
T Consensus       151 ~p~~i~~~~~----g~l~v~~~-~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~  224 (270)
T 1rwi_B          151 DPDGVAVDNS----GNVYVTDT-DNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT  224 (270)
T ss_dssp             SCCCEEECTT----CCEEEEEG-GGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSC
T ss_pred             CceeEEEeCC----CCEEEEEC-CCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCc
Confidence            4567888887    56555544 47899999987665443333333556788 88988888888788899999986543

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=97.47  E-value=0.00075  Score=40.42  Aligned_cols=77  Identities=14%  Similarity=0.011  Sum_probs=55.5

Q ss_pred             EEEEEecCCCCcceEEEeee---------CCCeEEEEeCCCCceeEEeecc-------ccceEEE-EecCCCEEEEecC-
Q psy14456          8 DVCFIEDTSNKSSLLISGGA---------GDCKIYVTDCATGQAFQALSGH-------SGHVLSL-YNWGGATVLSGSH-   69 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~g~---------~~~~v~~~~~~~~~~~~~~~~~-------~~~v~~~-~~~~~~~~~s~~~-   69 (93)
                      .+.++|+    ++.++.+..         .++.|.++|..+.+.+..+.--       ......+ ++++++.++.+.. 
T Consensus       122 gia~SpD----gk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~  197 (426)
T 3c75_H          122 HPVAAED----GSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFS  197 (426)
T ss_dssp             EEEECTT----SSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECS
T ss_pred             ceEECCC----CCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecC
Confidence            6889998    565555431         3678999999999887766421       1122345 8999998887763 


Q ss_pred             -CCcEEEEeCCCCceeeEec
Q psy14456         70 -DRTVRFWDLRTRGCTNVLT   88 (93)
Q Consensus        70 -~~~i~~~d~~~~~~~~~~~   88 (93)
                       ++.+.+.|..+++.+..+.
T Consensus       198 ~~~~VsVID~~t~kvv~~I~  217 (426)
T 3c75_H          198 PAPAVGVVDLEGKTFDRMLD  217 (426)
T ss_dssp             SSCEEEEEETTTTEEEEEEE
T ss_pred             CCCeEEEEECCCCeEEEEEE
Confidence             5789999999988776664

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=97.40  E-value=0.0049  Score=34.85  Aligned_cols=75  Identities=11%  Similarity=0.101  Sum_probs=49.5

Q ss_pred             ccceeEEEEEecCCCCcceEEEeeeCC----CeEEEEeCCCCceeEEee--ccccceEEE-EecCCCEEEEecC------
Q psy14456          3 DGTVRDVCFIEDTSNKSSLLISGGAGD----CKIYVTDCATGQAFQALS--GHSGHVLSL-YNWGGATVLSGSH------   69 (93)
Q Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~g~~~----~~v~~~~~~~~~~~~~~~--~~~~~v~~~-~~~~~~~~~s~~~------   69 (93)
                      ...+.+++++|+    +.++++.. .+    +.|.+|+.+++.....+.  .....+..+ +++++.++++...      
T Consensus        86 ~~~~~~i~~~~d----g~l~v~~~-~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~  160 (333)
T 2dg1_A           86 KANPAAIKIHKD----GRLFVCYL-GDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNP  160 (333)
T ss_dssp             SSSEEEEEECTT----SCEEEEEC-TTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBC
T ss_pred             CCCcceEEECCC----CcEEEEeC-CCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCC
Confidence            356888999988    66666543 34    689999988776543332  234567788 9999988876653      


Q ss_pred             CCcEEEEeCCCCc
Q psy14456         70 DRTVRFWDLRTRG   82 (93)
Q Consensus        70 ~~~i~~~d~~~~~   82 (93)
                      .+.+..+|..+++
T Consensus       161 ~~~l~~~~~~~~~  173 (333)
T 2dg1_A          161 LGGVYYVSPDFRT  173 (333)
T ss_dssp             CEEEEEECTTSCC
T ss_pred             CceEEEEeCCCCE
Confidence            2456666665443

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=97.37  E-value=0.007  Score=35.93  Aligned_cols=60  Identities=13%  Similarity=0.163  Sum_probs=47.0

Q ss_pred             CeEEEEeCCCCceeEEeeccccceEEE-EecCCC-EEEE-ecCCCcEEEEeCCCCceeeEecCc
Q psy14456         30 CKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGA-TVLS-GSHDRTVRFWDLRTRGCTNVLTPI   90 (93)
Q Consensus        30 ~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~-~~~s-~~~~~~i~~~d~~~~~~~~~~~~~   90 (93)
                      ..|.+.|+.+++.+..+.. ...+..+ ++++++ .+++ ...++.+.++|..+++.++.+...
T Consensus       311 ~~V~viD~~t~kv~~~i~v-g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~  373 (386)
T 3sjl_D          311 RFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL  373 (386)
T ss_dssp             EEEEEEETTTCCEEEEEEE-EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC
T ss_pred             CEEEEEECCCCeEEEEEEC-CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCC
Confidence            5789999999999887753 2355678 999886 5555 456899999999999998888653

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=97.31  E-value=0.0025  Score=40.15  Aligned_cols=59  Identities=12%  Similarity=0.009  Sum_probs=45.2

Q ss_pred             CeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCCCceeeEecC
Q psy14456         30 CKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRGCTNVLTP   89 (93)
Q Consensus        30 ~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~   89 (93)
                      +.|..||+.+++.+-.... ....... +...+.+++.++.|+.+.+||.++++.+..+..
T Consensus       457 g~l~A~D~~tG~~~W~~~~-~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~  516 (677)
T 1kb0_A          457 GRLLAWDPVAQKAAWSVEH-VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPT  516 (677)
T ss_dssp             EEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             cEEEEEeCCCCcEEeecCC-CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeC
Confidence            7899999999988766642 2222333 556677888889999999999999999888753

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=97.28  E-value=0.0035  Score=39.42  Aligned_cols=73  Identities=21%  Similarity=0.304  Sum_probs=49.0

Q ss_pred             ccceeEEEEEecCCCCcceEEEe----eeCCCeEEEEeCCCCceeEE-eeccccceEEE-EecCCCEEEEecCCC-----
Q psy14456          3 DGTVRDVCFIEDTSNKSSLLISG----GAGDCKIYVTDCATGQAFQA-LSGHSGHVLSL-YNWGGATVLSGSHDR-----   71 (93)
Q Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~----g~~~~~v~~~~~~~~~~~~~-~~~~~~~v~~~-~~~~~~~~~s~~~~~-----   71 (93)
                      ...+..++|+|+    +++++-+    |++...|+++|+.+++.+.. +...  ....+ |+ +++.++..+.+.     
T Consensus       128 ~~~l~~~~~SpD----g~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~--k~~~~~Ws-Dg~~l~y~~~~~~~~~~  200 (693)
T 3iuj_A          128 TTALDQLSFSRD----GRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDV--KFSGISWL-GNEGFFYSSYDKPDGSE  200 (693)
T ss_dssp             CCEEEEEEECTT----SSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEE--ESCCCEEE-TTTEEEEEESSCCC---
T ss_pred             cEEEEEEEECCC----CCEEEEEEecCCCceEEEEEEECCCCCCCccccCCc--eeccEEEe-CCCEEEEEEecCccccc
Confidence            346788899999    6766532    33335799999999986543 2111  12345 89 999888776553     


Q ss_pred             --------cEEEEeCCCCc
Q psy14456         72 --------TVRFWDLRTRG   82 (93)
Q Consensus        72 --------~i~~~d~~~~~   82 (93)
                              .|.+|++.+++
T Consensus       201 ~~~~~~~~~v~~~~lgt~~  219 (693)
T 3iuj_A          201 LSARTDQHKVYFHRLGTAQ  219 (693)
T ss_dssp             ----CCCCEEEEEETTSCG
T ss_pred             ccccCCCcEEEEEECCCCc
Confidence                    48889988764

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=97.27  E-value=0.0015  Score=40.73  Aligned_cols=70  Identities=16%  Similarity=0.075  Sum_probs=51.6

Q ss_pred             eeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCc------------eeEEeeccccceEEE-EecCCCEEEEecCCCc
Q psy14456          6 VRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQ------------AFQALSGHSGHVLSL-YNWGGATVLSGSHDRT   72 (93)
Q Consensus         6 v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~------------~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~   72 (93)
                      ..++.++|+    +++++.++..+..+.++|+.+..            .......- .....+ |++++....+.-.|++
T Consensus       279 PhGv~~sPD----Gk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG-~gP~h~aF~~dG~aY~t~~ldsq  353 (595)
T 1fwx_A          279 PHGCNMAPD----KKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELG-LGPLHTAFDGRGNAYTSLFLDSQ  353 (595)
T ss_dssp             CCCEEECTT----SSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCC-SCEEEEEECTTSEEEEEETTTTE
T ss_pred             ceEEEEcCC----CCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCC-CCcceEEECCCCeEEEEEecCCc
Confidence            456888999    78887777679999999998652            23333322 334566 9999955567779999


Q ss_pred             EEEEeCCC
Q psy14456         73 VRFWDLRT   80 (93)
Q Consensus        73 i~~~d~~~   80 (93)
                      +.+||+.+
T Consensus       354 V~kwdi~~  361 (595)
T 1fwx_A          354 VVKWNIED  361 (595)
T ss_dssp             EEEEEHHH
T ss_pred             EEEEEhhH
Confidence            99999887

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=97.26  E-value=0.0079  Score=34.37  Aligned_cols=78  Identities=15%  Similarity=0.168  Sum_probs=52.9

Q ss_pred             ceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccc-----cceEEE-EecCCCEEEEec-CCCcEEEEe
Q psy14456          5 TVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHS-----GHVLSL-YNWGGATVLSGS-HDRTVRFWD   77 (93)
Q Consensus         5 ~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~-----~~v~~~-~~~~~~~~~s~~-~~~~i~~~d   77 (93)
                      ....++++++    +..+++.. .++.|.++|..+++....+....     .....+ + .++.++++.. .++.|.++|
T Consensus        85 ~p~~i~~~~~----g~lyv~~~-~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD  158 (328)
T 3dsm_A           85 SPRYIHFLSD----EKAYVTQI-WDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKID  158 (328)
T ss_dssp             SEEEEEEEET----TEEEEEEB-SCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEE
T ss_pred             CCcEEEEeCC----CeEEEEEC-CCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEE
Confidence            4567888887    65444443 48999999999988776664322     133455 5 3444455543 488999999


Q ss_pred             CCCCceeeEec
Q psy14456         78 LRTRGCTNVLT   88 (93)
Q Consensus        78 ~~~~~~~~~~~   88 (93)
                      ..+++....+.
T Consensus       159 ~~t~~~~~~i~  169 (328)
T 3dsm_A          159 TETDKVVDELT  169 (328)
T ss_dssp             TTTTEEEEEEE
T ss_pred             CCCCeEEEEEE
Confidence            99988777664

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=97.25  E-value=0.0081  Score=34.29  Aligned_cols=77  Identities=14%  Similarity=0.109  Sum_probs=50.2

Q ss_pred             eeEEEEEecCCCCcceEEEeeeCCCeEEEEeCC--CC-ce-----eEEeeccccceEEE-EecCCCEEEEecCCCcEEEE
Q psy14456          6 VRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCA--TG-QA-----FQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFW   76 (93)
Q Consensus         6 v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~--~~-~~-----~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~   76 (93)
                      ...++|+|+    ++.++.+...++.|.+|+.+  ++ ..     ...+.........+ +.+++.++++...++.|..|
T Consensus       181 ~~~i~~s~d----g~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~  256 (326)
T 2ghs_A          181 PNSICFSPD----GTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRY  256 (326)
T ss_dssp             EEEEEECTT----SCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEE
T ss_pred             cCCeEEcCC----CCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEE
Confidence            457888888    66555555457899999975  55 31     22222223445667 88888888776667889999


Q ss_pred             eCCCCceeeEe
Q psy14456         77 DLRTRGCTNVL   87 (93)
Q Consensus        77 d~~~~~~~~~~   87 (93)
                      |. +++.+..+
T Consensus       257 d~-~g~~~~~i  266 (326)
T 2ghs_A          257 DT-DGNHIARY  266 (326)
T ss_dssp             CT-TCCEEEEE
T ss_pred             CC-CCCEEEEE
Confidence            98 45554444

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=97.17  E-value=0.01  Score=34.04  Aligned_cols=82  Identities=16%  Similarity=0.043  Sum_probs=55.3

Q ss_pred             cceeEEEEEecCCCCcceEEEeeeC----CCeEEEEeCCCCceeEEeec------cccceEEE-EecC-CCEEEEec---
Q psy14456          4 GTVRDVCFIEDTSNKSSLLISGGAG----DCKIYVTDCATGQAFQALSG------HSGHVLSL-YNWG-GATVLSGS---   68 (93)
Q Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~g~~----~~~v~~~~~~~~~~~~~~~~------~~~~v~~~-~~~~-~~~~~s~~---   68 (93)
                      ..+..++++++    +.++++-...    +..|.+||+.+++.+..+.-      +......+ ++++ +..+++-.   
T Consensus        67 ~~p~gv~~d~~----g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~  142 (343)
T 2qe8_A           67 DTVLGIKSDGN----GIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPD  142 (343)
T ss_dssp             SCEEEEEECSS----SEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSG
T ss_pred             eEeeEEEEcCC----CcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccC
Confidence            56888999887    5555543111    47899999998886655532      12345677 8875 45556655   


Q ss_pred             CCCcEEEEeCCCCceeeEecC
Q psy14456         69 HDRTVRFWDLRTRGCTNVLTP   89 (93)
Q Consensus        69 ~~~~i~~~d~~~~~~~~~~~~   89 (93)
                      .++.+.+||+.++...+.+..
T Consensus       143 ~~~~i~v~d~~~g~~~r~~~~  163 (343)
T 2qe8_A          143 DKAALIRVDLQTGLAARVLQG  163 (343)
T ss_dssp             GGCEEEEEETTTCCEEEECTT
T ss_pred             CCCeEEEEECCCCCEEEEecC
Confidence            678999999998877666543

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=97.11  E-value=0.013  Score=34.69  Aligned_cols=72  Identities=11%  Similarity=0.081  Sum_probs=49.7

Q ss_pred             ceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCC--cEEEEeCCCC
Q psy14456          5 TVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDR--TVRFWDLRTR   81 (93)
Q Consensus         5 ~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~--~i~~~d~~~~   81 (93)
                      ....++|+++    ++++++.. .++.|+.||..++............ . + |++++..++.+..++  .+..++...+
T Consensus       132 ~P~~la~d~~----g~lyv~d~-~~~~I~~id~~~g~~~~~~~~~~~~-~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~  204 (409)
T 3hrp_A          132 YMWGIAAVGN----NTVLAYQR-DDPRVRLISVDDNKVTTVHPGFKGG-K-PAVTKDKQRVYSIGWEGTHTVYVYMKASG  204 (409)
T ss_dssp             CEEEEEECST----TEEEEEET-TTTEEEEEETTTTEEEEEEETCCBC-B-CEECTTSSEEEEEBSSTTCEEEEEEGGGT
T ss_pred             CceEEEEeCC----CCEEEEec-CCCcEEEEECCCCEEEEeeccCCCC-c-eeEecCCCcEEEEecCCCceEEEEEcCCC
Confidence            4678889887    56555543 5799999999877665444332222 3 6 899988888777655  7888887655


Q ss_pred             ce
Q psy14456         82 GC   83 (93)
Q Consensus        82 ~~   83 (93)
                      ..
T Consensus       205 ~~  206 (409)
T 3hrp_A          205 WA  206 (409)
T ss_dssp             TC
T ss_pred             ce
Confidence            44

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=97.05  E-value=0.0076  Score=35.47  Aligned_cols=56  Identities=14%  Similarity=0.023  Sum_probs=45.6

Q ss_pred             eEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEec----------CCCcEEEEeCCCCceeeEec
Q psy14456         31 KIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGS----------HDRTVRFWDLRTRGCTNVLT   88 (93)
Q Consensus        31 ~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~----------~~~~i~~~d~~~~~~~~~~~   88 (93)
                      .+.+.|..+++.+..+..-..+  .+ ++|++..+..+.          .++.+.+||..+++....+.
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~  113 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIE  113 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEE
T ss_pred             eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEE
Confidence            8889999999999888644445  57 999988777665          36889999999999888874

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=96.96  E-value=0.016  Score=32.58  Aligned_cols=69  Identities=10%  Similarity=-0.024  Sum_probs=49.3

Q ss_pred             ceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCC
Q psy14456          5 TVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLR   79 (93)
Q Consensus         5 ~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~   79 (93)
                      ......|+|+    ++.++.++..++.+..|+. .+. ...+......+..+ ++++++++++...++.|..|+..
T Consensus        46 ~~egp~~~~~----g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~  115 (305)
T 3dr2_A           46 WSEGPAWWEA----QRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD  115 (305)
T ss_dssp             SEEEEEEEGG----GTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred             CccCCeEeCC----CCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC
Confidence            3567889998    6655555556899999987 444 33444455667788 99999977766666789999875

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=96.88  E-value=0.02  Score=32.18  Aligned_cols=70  Identities=16%  Similarity=0.043  Sum_probs=48.9

Q ss_pred             eeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCCCce
Q psy14456          6 VRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRGC   83 (93)
Q Consensus         6 v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~~   83 (93)
                      -.+..|+|+    ...++.+...++.|..|+..++... .+. ....+.++ +.+++.++++.  +..+.+||..+++.
T Consensus        15 ~Egp~w~~~----~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~   85 (297)
T 3g4e_A           15 GESPVWEEV----SNSLLFVDIPAKKVCRWDSFTKQVQ-RVT-MDAPVSSVALRQSGGYVATI--GTKFCALNWKEQSA   85 (297)
T ss_dssp             EEEEEEETT----TTEEEEEETTTTEEEEEETTTCCEE-EEE-CSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEE
T ss_pred             ccCCeEECC----CCEEEEEECCCCEEEEEECCCCcEE-EEe-CCCceEEEEECCCCCEEEEE--CCeEEEEECCCCcE
Confidence            457788886    3444444556899999998877652 232 34567788 99999866654  56889999887654

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=96.87  E-value=0.021  Score=32.36  Aligned_cols=75  Identities=9%  Similarity=0.049  Sum_probs=50.5

Q ss_pred             eEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCC-CEEEEecCCCcEEEEeCCCCcee
Q psy14456          7 RDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGG-ATVLSGSHDRTVRFWDLRTRGCT   84 (93)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~-~~~~s~~~~~~i~~~d~~~~~~~   84 (93)
                      ..+.|+.     +.++.+.| .++.|+++|+++++.+..+.  ....... ....+ .+....-.++.+.++|..+.+.+
T Consensus        58 qGL~~~~-----~~Ly~stG-~~g~v~~iD~~Tgkv~~~~l--~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~  129 (268)
T 3nok_A           58 QGLVFHQ-----GHFFESTG-HQGTLRQLSLESAQPVWMER--LGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRE  129 (268)
T ss_dssp             EEEEEET-----TEEEEEET-TTTEEEECCSSCSSCSEEEE--CTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEE
T ss_pred             ceEEEEC-----CEEEEEcC-CCCEEEEEECCCCcEEeEEC--CCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEE
Confidence            4566652     56777777 58899999999998877662  2222222 23333 44444446889999999999888


Q ss_pred             eEecC
Q psy14456         85 NVLTP   89 (93)
Q Consensus        85 ~~~~~   89 (93)
                      ..|..
T Consensus       130 ~ti~~  134 (268)
T 3nok_A          130 RTTRY  134 (268)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            88763

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=96.78  E-value=0.044  Score=34.77  Aligned_cols=73  Identities=12%  Similarity=0.034  Sum_probs=47.2

Q ss_pred             ceeEEEEEecCCCCcceEEEeeeC----CCeEEEEeCCCC--ceeEEeeccccceEEEEecCCCEEEEecC----CCcEE
Q psy14456          5 TVRDVCFIEDTSNKSSLLISGGAG----DCKIYVTDCATG--QAFQALSGHSGHVLSLYNWGGATVLSGSH----DRTVR   74 (93)
Q Consensus         5 ~v~~~~~~~~~~~~~~~~~~~g~~----~~~v~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~s~~~----~~~i~   74 (93)
                      .+..+.|+|+    ++.++....+    ...+.+||+.++  .+...+..+.......+.+++..++..+.    +..|.
T Consensus       269 ~~~~~~~SpD----G~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~  344 (741)
T 1yr2_A          269 RGHGASVSSD----GRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFVDGVGDQLWFVSGDGAPLKKIV  344 (741)
T ss_dssp             CEEEEEECTT----SCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEE
T ss_pred             EEEEEEECCC----CCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEEeccCCEEEEEECCCCCCCEEE
Confidence            4778899999    6766655532    348899998776  31445555554444444577777665543    34599


Q ss_pred             EEeCCCC
Q psy14456         75 FWDLRTR   81 (93)
Q Consensus        75 ~~d~~~~   81 (93)
                      +||+.++
T Consensus       345 ~~d~~~~  351 (741)
T 1yr2_A          345 RVDLSGS  351 (741)
T ss_dssp             EEECSSS
T ss_pred             EEeCCCC
Confidence            9998874

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=96.75  E-value=0.023  Score=31.30  Aligned_cols=70  Identities=10%  Similarity=0.113  Sum_probs=50.4

Q ss_pred             cceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeE-EeeccccceEEE-EecCCCEEEEecCCCcEEEEeCC
Q psy14456          4 GTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQ-ALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLR   79 (93)
Q Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~-~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~   79 (93)
                      ..+.++++.++    +..+++.. .++.|..|+.. +.... ........+..+ +.+++.++++...++.+..||..
T Consensus        15 ~~~~~i~~d~~----g~l~v~~~-~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~   86 (299)
T 2z2n_A           15 TGPYGITVSDK----GKVWITQH-KANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK   86 (299)
T ss_dssp             CCEEEEEECTT----SCEEEEET-TTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred             CCccceEECCC----CCEEEEec-CCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC
Confidence            46788888887    66666654 37899999988 54332 222234567788 88888888887778889999876

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=96.59  E-value=0.038  Score=31.55  Aligned_cols=71  Identities=13%  Similarity=-0.077  Sum_probs=48.4

Q ss_pred             eeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCCCcee
Q psy14456          6 VRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRGCT   84 (93)
Q Consensus         6 v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~~~   84 (93)
                      .....|+|+    +..++.++..++.|..|+.+++... .+. ....+.++ +.+++.++++.  +..+.+||..++...
T Consensus        51 ~egp~~~~~----~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~--~~gl~~~d~~~g~~~  122 (326)
T 2ghs_A           51 GEGPTFDPA----SGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS--DDGLFLRDTATGVLT  122 (326)
T ss_dssp             EEEEEEETT----TTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE--TTEEEEEETTTCCEE
T ss_pred             CcCCeEeCC----CCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE--CCCEEEEECCCCcEE
Confidence            357788887    3444444546889999998877543 232 24567888 89998877765  334888998877643

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=96.58  E-value=0.032  Score=30.73  Aligned_cols=72  Identities=10%  Similarity=-0.006  Sum_probs=48.9

Q ss_pred             cceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCce-eEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCCC
Q psy14456          4 GTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQA-FQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTR   81 (93)
Q Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~-~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~   81 (93)
                      ..+..+++.++    +..+++.. .++.|..|+.. +.. ...+......+..+ +.+++.++++...++.+..||. ++
T Consensus        57 ~~~~~i~~~~~----g~l~v~~~-~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g  129 (299)
T 2z2n_A           57 AKVMCLTISSD----GEVWFTEN-AANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DG  129 (299)
T ss_dssp             CCEEEEEECTT----SCEEEEET-TTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TC
T ss_pred             CceeeEEECCC----CCEEEeCC-CCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CC
Confidence            45777888876    56666644 47889999876 332 12222234466788 8888888888777888999988 44


Q ss_pred             c
Q psy14456         82 G   82 (93)
Q Consensus        82 ~   82 (93)
                      .
T Consensus       130 ~  130 (299)
T 2z2n_A          130 K  130 (299)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=96.56  E-value=0.035  Score=34.45  Aligned_cols=60  Identities=15%  Similarity=-0.066  Sum_probs=42.8

Q ss_pred             CCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCCCceeeEecC
Q psy14456         29 DCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRGCTNVLTP   89 (93)
Q Consensus        29 ~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~   89 (93)
                      ++.+..+|..+++.+-.+... ..+... +...+..++.++.|+.+..+|.++++.+..+..
T Consensus       443 ~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~  503 (571)
T 2ad6_A          443 MGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKM  503 (571)
T ss_dssp             CEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CCeEEEEECCCCCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeC
Confidence            578999999999887665422 122222 333456677788999999999999998877753

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=96.48  E-value=0.035  Score=35.04  Aligned_cols=60  Identities=8%  Similarity=-0.017  Sum_probs=44.3

Q ss_pred             CCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCCCceeeEecC
Q psy14456         29 DCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRGCTNVLTP   89 (93)
Q Consensus        29 ~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~   89 (93)
                      ++.|..||+.+++.+-....... .... +...+.+++.++.|+.+.+||.++++.+..+..
T Consensus       437 ~g~l~A~D~~tG~~~W~~~~~~~-~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~  497 (668)
T 1kv9_A          437 SGALLAWDPVKQKAAWKVPYPTH-WNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEA  497 (668)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSS-CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             cceEEEEeCCCCcEEEEccCCCC-CcCceeEeCCCEEEEECCcccchhhhhhcChhheEecC
Confidence            47899999999988765543222 1212 344677888889999999999999998877743

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=96.39  E-value=0.063  Score=31.85  Aligned_cols=70  Identities=10%  Similarity=0.076  Sum_probs=48.0

Q ss_pred             EEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccc---------------cceEEE-EecCCCEEEEec-CC
Q psy14456          8 DVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHS---------------GHVLSL-YNWGGATVLSGS-HD   70 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~---------------~~v~~~-~~~~~~~~~s~~-~~   70 (93)
                      .++|+|++   +.++++ ...++.|..|+.+..  +..+.++.               .....+ +++++.++++-. .+
T Consensus       271 ~ia~~p~~---g~lyv~-d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~  344 (409)
T 3hrp_A          271 YLIYYFVD---SNFYMS-DQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKG  344 (409)
T ss_dssp             EEEEETTT---TEEEEE-ETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTT
T ss_pred             cEEEeCCC---CEEEEE-eCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCC
Confidence            88999852   444444 445889999987643  22232221               335678 999999888877 88


Q ss_pred             CcEEEEeCCCCce
Q psy14456         71 RTVRFWDLRTRGC   83 (93)
Q Consensus        71 ~~i~~~d~~~~~~   83 (93)
                      +.|..|++.++..
T Consensus       345 ~~I~~~~~~~G~v  357 (409)
T 3hrp_A          345 YCLRKLDILDGYV  357 (409)
T ss_dssp             CEEEEEETTTTEE
T ss_pred             CEEEEEECCCCEE
Confidence            9999999777654

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=96.37  E-value=0.00067  Score=39.55  Aligned_cols=62  Identities=24%  Similarity=0.235  Sum_probs=32.1

Q ss_pred             eEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCCCceeeEe
Q psy14456         21 LLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRGCTNVL   87 (93)
Q Consensus        21 ~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~   87 (93)
                      .+++++ .++.+..||.++|+.+..+..+.    .. +.|++..++.++.++.+..||.++|+.+..+
T Consensus        94 ~v~~g~-~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~  156 (369)
T 2hz6_A           94 ILYMGK-KQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNA  156 (369)
T ss_dssp             -CCCCE-EEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEE
T ss_pred             EEEEEe-CCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeE
Confidence            344444 58999999999998877665432    23 5667778888888999999999998765443

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=96.36  E-value=0.053  Score=30.62  Aligned_cols=77  Identities=10%  Similarity=0.124  Sum_probs=52.2

Q ss_pred             eeEEEEEecCCCCcceEEEeeeCCC--eEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEec-CCCcEEEEeCCCC
Q psy14456          6 VRDVCFIEDTSNKSSLLISGGAGDC--KIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGS-HDRTVRFWDLRTR   81 (93)
Q Consensus         6 v~~~~~~~~~~~~~~~~~~~g~~~~--~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~-~~~~i~~~d~~~~   81 (93)
                      ...+.|+ +    +.++.+.|. ++  .|+.+|+++++.+..+.-.. ..... ..+.+..+.... .++.+.++|..+.
T Consensus        45 tqGL~~~-~----~~LyestG~-~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~  117 (262)
T 3nol_A           45 TEGFFYR-N----GYFYESTGL-NGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLGFVWNIRNL  117 (262)
T ss_dssp             EEEEEEE-T----TEEEEEEEE-TTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETTTC
T ss_pred             cceEEEE-C----CEEEEECCC-CCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEEEEEECccC
Confidence            3566776 4    567777774 65  89999999999887775322 22222 333444444443 6789999999999


Q ss_pred             ceeeEecC
Q psy14456         82 GCTNVLTP   89 (93)
Q Consensus        82 ~~~~~~~~   89 (93)
                      +.+..+..
T Consensus       118 ~~~~ti~~  125 (262)
T 3nol_A          118 RQVRSFNY  125 (262)
T ss_dssp             CEEEEEEC
T ss_pred             cEEEEEEC
Confidence            88887753

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=96.33  E-value=0.079  Score=32.35  Aligned_cols=59  Identities=22%  Similarity=0.341  Sum_probs=44.8

Q ss_pred             CeEEEEeCCCCceeEEeecccc---ceEEE-EecCCCEEEEec-------------------CCCcEEEEeCCCCceeeE
Q psy14456         30 CKIYVTDCATGQAFQALSGHSG---HVLSL-YNWGGATVLSGS-------------------HDRTVRFWDLRTRGCTNV   86 (93)
Q Consensus        30 ~~v~~~~~~~~~~~~~~~~~~~---~v~~~-~~~~~~~~~s~~-------------------~~~~i~~~d~~~~~~~~~   86 (93)
                      +.+.+.|.++.+.+..+..-..   .-+.+ |+|+++.+++..                   .+..|.+||+.+++.++.
T Consensus       164 g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~t  243 (462)
T 2ece_A          164 GGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHS  243 (462)
T ss_dssp             CEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEE
T ss_pred             CeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeE
Confidence            7899999999998888853222   22346 899999888884                   368999999998876666


Q ss_pred             ec
Q psy14456         87 LT   88 (93)
Q Consensus        87 ~~   88 (93)
                      +.
T Consensus       244 I~  245 (462)
T 2ece_A          244 LT  245 (462)
T ss_dssp             EE
T ss_pred             Ee
Confidence            54

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=96.32  E-value=0.027  Score=32.32  Aligned_cols=79  Identities=13%  Similarity=0.121  Sum_probs=49.0

Q ss_pred             ceeEEEEEecCCCCcceEEEee-eCCCeEEEEeCCCCceeEEee-------ccccceEEE-EecCCCEEEEecC-----C
Q psy14456          5 TVRDVCFIEDTSNKSSLLISGG-AGDCKIYVTDCATGQAFQALS-------GHSGHVLSL-YNWGGATVLSGSH-----D   70 (93)
Q Consensus         5 ~v~~~~~~~~~~~~~~~~~~~g-~~~~~v~~~~~~~~~~~~~~~-------~~~~~v~~~-~~~~~~~~~s~~~-----~   70 (93)
                      ....++++|+    ++.+++.. ..++.+++|.+..+.. ..+.       .+...+..+ +++++.++++-..     +
T Consensus        18 ~p~~va~~~~----g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~   92 (343)
T 2qe8_A           18 APGNITLTPD----GRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSV   92 (343)
T ss_dssp             CEEEEEECTT----SCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSC
T ss_pred             CcceEEECCC----CCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCC
Confidence            5678888887    67777642 1133244554444432 2221       234567888 8988876665433     5


Q ss_pred             CcEEEEeCCCCceeeEec
Q psy14456         71 RTVRFWDLRTRGCTNVLT   88 (93)
Q Consensus        71 ~~i~~~d~~~~~~~~~~~   88 (93)
                      ..|.+||+.+++.++.+.
T Consensus        93 ~~i~~~d~~tg~~~~~~~  110 (343)
T 2qe8_A           93 PKLVAWDTLNNQLSRVIY  110 (343)
T ss_dssp             CEEEEEETTTTEEEEEEE
T ss_pred             CeEEEEECCCCeEEEEEE
Confidence            789999999888666553

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=96.29  E-value=0.048  Score=34.00  Aligned_cols=60  Identities=13%  Similarity=0.123  Sum_probs=42.9

Q ss_pred             CCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCCCceeeEecC
Q psy14456         29 DCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRGCTNVLTP   89 (93)
Q Consensus        29 ~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~   89 (93)
                      .+.+..||+.+++.+-...... ....- ....+.+++.++.|+.++.+|.++|+.+..+..
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~  525 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT  525 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             cceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecC
Confidence            5789999999998775554221 11111 233466777899999999999999998877753

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=96.25  E-value=0.062  Score=30.34  Aligned_cols=78  Identities=15%  Similarity=0.087  Sum_probs=53.1

Q ss_pred             eeEEEEEecCCCCcceEEEeee-CCCeEEEEeCCCCceeEEeecccc-ceEEEEecCC-CEEEEecCCCcEEEEeCCCCc
Q psy14456          6 VRDVCFIEDTSNKSSLLISGGA-GDCKIYVTDCATGQAFQALSGHSG-HVLSLYNWGG-ATVLSGSHDRTVRFWDLRTRG   82 (93)
Q Consensus         6 v~~~~~~~~~~~~~~~~~~~g~-~~~~v~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~-~~~~s~~~~~~i~~~d~~~~~   82 (93)
                      ...+.|+++    +.+++++|. .++.|.+.|..+++.+..+.-... ....+ ..++ .+.++.-.++.+.++|..+.+
T Consensus        23 ~~Gl~~~~d----g~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi-~~~g~~lyv~t~~~~~v~viD~~t~~   97 (266)
T 2iwa_A           23 TQGLVYAEN----DTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGL-TLLNEKLYQVVWLKNIGFIYDRRTLS   97 (266)
T ss_dssp             EEEEEECST----TEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEE-EEETTEEEEEETTCSEEEEEETTTTE
T ss_pred             cccEEEeCC----CeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEE-EEeCCEEEEEEecCCEEEEEECCCCc
Confidence            467888886    566666662 268999999999998877642221 11233 3334 444455578899999999988


Q ss_pred             eeeEec
Q psy14456         83 CTNVLT   88 (93)
Q Consensus        83 ~~~~~~   88 (93)
                      .+..+.
T Consensus        98 v~~~i~  103 (266)
T 2iwa_A           98 NIKNFT  103 (266)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            888774

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=96.10  E-value=0.032  Score=34.00  Aligned_cols=69  Identities=12%  Similarity=0.132  Sum_probs=48.3

Q ss_pred             cceEEEeeeCCCeEEEEeCCCC----ceeEEee------c-cccceEEE-EecCCCEEEEecCC------CcEEEEeCCC
Q psy14456         19 SSLLISGGAGDCKIYVTDCATG----QAFQALS------G-HSGHVLSL-YNWGGATVLSGSHD------RTVRFWDLRT   80 (93)
Q Consensus        19 ~~~~~~~g~~~~~v~~~~~~~~----~~~~~~~------~-~~~~v~~~-~~~~~~~~~s~~~~------~~i~~~d~~~   80 (93)
                      +++++..|..+..|.++|+.+.    +....+.      . -......+ ..|++ .++++..+      +.+.+.|..+
T Consensus        95 r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T  173 (462)
T 2ece_A           95 RRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYS  173 (462)
T ss_dssp             SCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTT
T ss_pred             CCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCC
Confidence            6777777778999999998755    4445552      0 11133455 67888 66666555      7899999999


Q ss_pred             CceeeEec
Q psy14456         81 RGCTNVLT   88 (93)
Q Consensus        81 ~~~~~~~~   88 (93)
                      .+.+..+.
T Consensus       174 ~~v~~~~~  181 (462)
T 2ece_A          174 FEPLGKWE  181 (462)
T ss_dssp             CCEEEECC
T ss_pred             CeEEEEEc
Confidence            98887775

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=95.94  E-value=0.093  Score=29.64  Aligned_cols=66  Identities=8%  Similarity=0.036  Sum_probs=45.9

Q ss_pred             eEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEEEecCCCEEEEecCCCcEEEEeCCCCceeeEec
Q psy14456         21 LLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWGGATVLSGSHDRTVRFWDLRTRGCTNVLT   88 (93)
Q Consensus        21 ~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~   88 (93)
                      .+....-+++.+.++|.++.+.+.++..-... .. +.+++..++....+..+.++|..+.+.+..+.
T Consensus        98 ~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG-~g-lt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~  163 (262)
T 3nol_A           98 KIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEG-WG-LTHNDQYLIMSDGTPVLRFLDPESLTPVRTIT  163 (262)
T ss_dssp             EEEEEESSSSEEEEEETTTCCEEEEEECSSCC-CC-EEECSSCEEECCSSSEEEEECTTTCSEEEEEE
T ss_pred             EEEEEEeeCCEEEEEECccCcEEEEEECCCCc-eE-EecCCCEEEEECCCCeEEEEcCCCCeEEEEEE
Confidence            33333336999999999999998888642221 12 45566666666667889999999887766654

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=95.82  E-value=0.11  Score=29.47  Aligned_cols=66  Identities=5%  Similarity=-0.039  Sum_probs=47.5

Q ss_pred             ceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEEEecCCCEEEEecCCCcEEEEeCCCCceeeEec
Q psy14456         20 SLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWGGATVLSGSHDRTVRFWDLRTRGCTNVLT   88 (93)
Q Consensus        20 ~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~   88 (93)
                      ..+.+.. +++.+.++|.++.+.+.++..-... .. +.+++..++....++.+.++|..+.+.+..+.
T Consensus       107 ~Ly~ltw-~~~~v~V~D~~Tl~~~~ti~~~~eG-wG-Lt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~  172 (268)
T 3nok_A          107 RLYQLTW-TEGLLFTWSGMPPQRERTTRYSGEG-WG-LCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQ  172 (268)
T ss_dssp             CEEEEES-SSCEEEEEETTTTEEEEEEECSSCC-CC-EEEETTEEEEECSSSEEEEECTTTCCEEEEEE
T ss_pred             EEEEEEc-cCCEEEEEECCcCcEEEEEeCCCce-eE-EecCCCEEEEECCCCEEEEEcCCCCeEEEEEE
Confidence            3444443 6999999999999998888642221 22 45567777766678999999999988777664

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=95.71  E-value=0.12  Score=29.18  Aligned_cols=68  Identities=12%  Similarity=0.066  Sum_probs=48.5

Q ss_pred             cceEEEeeeCCCeEEEEeCCCCceeEEeeccc--c---ceEEE-EecCCCEEEEecCCCcEEEEeCCCCceeeEec
Q psy14456         19 SSLLISGGAGDCKIYVTDCATGQAFQALSGHS--G---HVLSL-YNWGGATVLSGSHDRTVRFWDLRTRGCTNVLT   88 (93)
Q Consensus        19 ~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~--~---~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~   88 (93)
                      ++.++.+. .++.+.+.|..+.+.+..+.-..  .   ....+ |. ++.+++..-.+..|.+.|..+++.+..+.
T Consensus       116 g~~l~vs~-gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~  189 (266)
T 2iwa_A          116 GKILYGSD-GTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWIL  189 (266)
T ss_dssp             SSSEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEEC-CCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEE
Confidence            44455544 47899999999988777665221  1   24556 66 67666666678899999999999877774

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=95.67  E-value=0.11  Score=28.55  Aligned_cols=73  Identities=14%  Similarity=0.121  Sum_probs=50.4

Q ss_pred             cceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeE-EeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCCC
Q psy14456          4 GTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQ-ALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTR   81 (93)
Q Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~-~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~   81 (93)
                      ....++.+.++    +...++.. .++.|.+++.. +.... .+......+..+ +.+++.++++...++.+..+|.. +
T Consensus        20 ~~p~~i~~d~~----g~l~v~~~-~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g   92 (300)
T 2qc5_A           20 SGPYGITSSED----GKVWFTQH-KANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-G   92 (300)
T ss_dssp             CCEEEEEECTT----SCEEEEET-TTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred             CCcceeeECCC----CCEEEEcC-CCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-C
Confidence            35677888777    56666554 47899999987 54432 222233567788 88888888877777889999877 4


Q ss_pred             ce
Q psy14456         82 GC   83 (93)
Q Consensus        82 ~~   83 (93)
                      ..
T Consensus        93 ~~   94 (300)
T 2qc5_A           93 GF   94 (300)
T ss_dssp             CE
T ss_pred             Ce
Confidence            43

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=95.60  E-value=0.12  Score=28.42  Aligned_cols=73  Identities=10%  Similarity=-0.000  Sum_probs=49.3

Q ss_pred             cceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCcee-EEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCCC
Q psy14456          4 GTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAF-QALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTR   81 (93)
Q Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~-~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~   81 (93)
                      ..+..+++.++    +..+++.. .++.|..++.. +... .........+..+ +.+++.++++...++.+..+|.. +
T Consensus        62 ~~~~~i~~~~~----g~l~v~~~-~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g  134 (300)
T 2qc5_A           62 AKVMCLIVSSL----GDIWFTEN-GANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-G  134 (300)
T ss_dssp             CCEEEEEECTT----SCEEEEET-TTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-S
T ss_pred             CcceeEEECCC----CCEEEEec-CCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-C
Confidence            35677777776    56555543 47889999877 5543 2222233566788 88888888887777888889876 4


Q ss_pred             ce
Q psy14456         82 GC   83 (93)
Q Consensus        82 ~~   83 (93)
                      ..
T Consensus       135 ~~  136 (300)
T 2qc5_A          135 TI  136 (300)
T ss_dssp             CE
T ss_pred             CE
Confidence            43

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=95.42  E-value=0.14  Score=31.24  Aligned_cols=70  Identities=16%  Similarity=0.171  Sum_probs=50.3

Q ss_pred             ceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCc------------eeEEeec------cccceEEE-EecC---CC
Q psy14456          5 TVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQ------------AFQALSG------HSGHVLSL-YNWG---GA   62 (93)
Q Consensus         5 ~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~------------~~~~~~~------~~~~v~~~-~~~~---~~   62 (93)
                      .+..+..+|+    +.+++..|  +..|.+-.+..+.            ..+.+.-      ...+|..+ |+|-   +.
T Consensus        67 ~i~qlvlSps----G~lLAl~g--~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds  140 (452)
T 3pbp_A           67 DTFHVISSTS----GDLLCLFN--DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDS  140 (452)
T ss_dssp             TTCEEEECTT----SSEEEEEC--SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGC
T ss_pred             ceeEEEECCC----CCEEEEec--CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCC
Confidence            4566788888    78888876  6788888876331            1112221      24568888 9994   56


Q ss_pred             EEEEecCCCcEEEEeCCC
Q psy14456         63 TVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus        63 ~~~s~~~~~~i~~~d~~~   80 (93)
                      .+++-..|+.|++||+..
T Consensus       141 ~LVVLtsD~~Ir~yDl~~  158 (452)
T 3pbp_A          141 CIVVLKEDDTITMFDILN  158 (452)
T ss_dssp             EEEEEETTSCEEEEETTC
T ss_pred             eEEEEecCCEEEEEEccc
Confidence            888889999999999986

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=95.32  E-value=0.17  Score=28.28  Aligned_cols=66  Identities=14%  Similarity=-0.008  Sum_probs=46.2

Q ss_pred             eEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEEEecCCCEEEEecCCCcEEEEeCCCCceeeEec
Q psy14456         21 LLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWGGATVLSGSHDRTVRFWDLRTRGCTNVLT   88 (93)
Q Consensus        21 ~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~   88 (93)
                      .+....-+++.+.++|.++.+.+.++...... .. +.+++..+.....++.+.++|..+.+.+..+.
T Consensus        76 ~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~G-wg-lt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~  141 (243)
T 3mbr_X           76 RLIQLTWRNHEGFVYDLATLTPRARFRYPGEG-WA-LTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIK  141 (243)
T ss_dssp             EEEEEESSSSEEEEEETTTTEEEEEEECSSCC-CE-EEECSSCEEEECSSSEEEEECTTTCCEEEEEE
T ss_pred             EEEEEEeeCCEEEEEECCcCcEEEEEeCCCCc-eE-EeeCCCEEEEECCCCeEEEEeCCCCeEEEEEE
Confidence            33333447999999999999998888643222 23 34556655555668899999999988777664

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=95.28  E-value=0.3  Score=30.95  Aligned_cols=75  Identities=21%  Similarity=0.272  Sum_probs=45.9

Q ss_pred             ceeEEEEEecCCCCcceEEEeeeC---CCeEEEEeCCCCc-eeEEeeccccceEEEEecCC-CEEEEecCC---CcEEEE
Q psy14456          5 TVRDVCFIEDTSNKSSLLISGGAG---DCKIYVTDCATGQ-AFQALSGHSGHVLSLYNWGG-ATVLSGSHD---RTVRFW   76 (93)
Q Consensus         5 ~v~~~~~~~~~~~~~~~~~~~g~~---~~~v~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~-~~~~s~~~~---~~i~~~   76 (93)
                      .+..+.|+|+    ++.++.+...   ...+.++++.++. ....+..+.......+.+++ .+++....+   ..|..+
T Consensus       235 ~~~~~~~SpD----g~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~  310 (693)
T 3iuj_A          235 RYVGATVTED----DRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTV  310 (693)
T ss_dssp             SEEEEEECTT----SCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEE
T ss_pred             EEEEEEEcCC----CCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEEEeccCCEEEEEECCCCCCCEEEEE
Confidence            4677889998    5665433321   3588999987763 34555555555444444544 444454443   578889


Q ss_pred             eCCCCce
Q psy14456         77 DLRTRGC   83 (93)
Q Consensus        77 d~~~~~~   83 (93)
                      |+.++..
T Consensus       311 d~~~~~~  317 (693)
T 3iuj_A          311 DAANPGP  317 (693)
T ss_dssp             ETTSCCG
T ss_pred             eCCCCCc
Confidence            9987654

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=94.84  E-value=0.25  Score=27.72  Aligned_cols=74  Identities=14%  Similarity=0.183  Sum_probs=49.7

Q ss_pred             cceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEee-ccccceEEE-EecCCCEEEEecCCCcEEEEeCCCC
Q psy14456          4 GTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALS-GHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTR   81 (93)
Q Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~-~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~   81 (93)
                      +.+..++|.|+    +..+++....++.|...|.. +..+..+. +-....-.+ +..++.++++.-.++.+.++++...
T Consensus        27 ~~lSGla~~~~----~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~  101 (255)
T 3qqz_A           27 NNISSLTWSAQ----SNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPN  101 (255)
T ss_dssp             SCEEEEEEETT----TTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTT
T ss_pred             cCcceeEEeCC----CCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCC
Confidence            45889999988    55566555568899988987 77766653 111334556 6667766666556677888876654


Q ss_pred             c
Q psy14456         82 G   82 (93)
Q Consensus        82 ~   82 (93)
                      .
T Consensus       102 ~  102 (255)
T 3qqz_A          102 S  102 (255)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=94.58  E-value=0.3  Score=27.44  Aligned_cols=70  Identities=11%  Similarity=0.137  Sum_probs=42.4

Q ss_pred             eeEEEEEecCCCCcceEEEe---eeC-------------CCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEec
Q psy14456          6 VRDVCFIEDTSNKSSLLISG---GAG-------------DCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGS   68 (93)
Q Consensus         6 v~~~~~~~~~~~~~~~~~~~---g~~-------------~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~   68 (93)
                      +..+++.|+    +..+++-   |..             .+.|..++..+++.....  .......+ |++++..+..+.
T Consensus       133 ~~~i~~d~d----G~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~  206 (305)
T 3dr2_A          133 PNDLIVARD----GAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQ  206 (305)
T ss_dssp             CCCEEECTT----SCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEE
T ss_pred             CCCEEECCC----CCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEe
Confidence            456778777    5666641   111             245666666556543322  33345677 999998766555


Q ss_pred             CC------CcEEEEeCCCC
Q psy14456         69 HD------RTVRFWDLRTR   81 (93)
Q Consensus        69 ~~------~~i~~~d~~~~   81 (93)
                      ..      +.|..|++..+
T Consensus       207 ~~~~~~~~~~i~~~~~~~~  225 (305)
T 3dr2_A          207 TPEQGHGSVEITAFAWRDG  225 (305)
T ss_dssp             CCC---CCCEEEEEEEETT
T ss_pred             cCCcCCCCCEEEEEEecCC
Confidence            44      68899988654

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=94.45  E-value=0.55  Score=29.95  Aligned_cols=56  Identities=13%  Similarity=0.129  Sum_probs=39.1

Q ss_pred             eEEEEeCCCCceeEEeec--cc-------cceEEE-EecCCC---EEEEecCCCcEEEEeCCCCceeeE
Q psy14456         31 KIYVTDCATGQAFQALSG--HS-------GHVLSL-YNWGGA---TVLSGSHDRTVRFWDLRTRGCTNV   86 (93)
Q Consensus        31 ~v~~~~~~~~~~~~~~~~--~~-------~~v~~~-~~~~~~---~~~s~~~~~~i~~~d~~~~~~~~~   86 (93)
                      .|..+|.++++.+-.++.  |.       ...... ...++.   .++.++.++.+.++|.++|+.+..
T Consensus       276 ~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~  344 (689)
T 1yiq_A          276 SIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSA  344 (689)
T ss_dssp             EEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEE
T ss_pred             eEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEecc
Confidence            499999999998776653  21       112222 233554   678889999999999999987643

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=94.27  E-value=0.2  Score=32.13  Aligned_cols=71  Identities=13%  Similarity=0.034  Sum_probs=44.3

Q ss_pred             ceeEEEEE-ecCCCCcceEEEeeeCCC----eEEEEeCCCC-ceeE-EeeccccceEEE-EecCCCEEEEecCC-----C
Q psy14456          5 TVRDVCFI-EDTSNKSSLLISGGAGDC----KIYVTDCATG-QAFQ-ALSGHSGHVLSL-YNWGGATVLSGSHD-----R   71 (93)
Q Consensus         5 ~v~~~~~~-~~~~~~~~~~~~~g~~~~----~v~~~~~~~~-~~~~-~~~~~~~~v~~~-~~~~~~~~~s~~~~-----~   71 (93)
                      .+....|+ |+    +++++-+.+.+|    .|.++|+.++ +.+. .+.   .....+ |+++++.++....+     .
T Consensus       175 ~~~~~~~S~PD----G~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~  247 (751)
T 2xe4_A          175 DVMEVKPAPPE----HDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLREN  247 (751)
T ss_dssp             EEEEEEECTTT----TCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEE
T ss_pred             EEeeeEecCCC----CCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCC
Confidence            56778999 98    666654433333    4999999988 5321 111   112345 89998877655443     3


Q ss_pred             cEEEEeCCCCc
Q psy14456         72 TVRFWDLRTRG   82 (93)
Q Consensus        72 ~i~~~d~~~~~   82 (93)
                      .|..+++.+++
T Consensus       248 ~v~~~~lgt~~  258 (751)
T 2xe4_A          248 KVWRHVMGKLQ  258 (751)
T ss_dssp             EEEEEETTSCG
T ss_pred             EEEEEECCCCc
Confidence            57777887654

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=94.26  E-value=0.3  Score=30.76  Aligned_cols=59  Identities=17%  Similarity=0.002  Sum_probs=41.7

Q ss_pred             CCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCCCceeeEec
Q psy14456         29 DCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRGCTNVLT   88 (93)
Q Consensus        29 ~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~   88 (93)
                      .+.+..||+.+++.+-..... .....- ....+.+++.++.|+.++.+|.++|+.+..+.
T Consensus       452 ~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~  511 (599)
T 1w6s_A          452 LGQIKAYNAITGDYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFK  511 (599)
T ss_dssp             CEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             cCeEEEEECCCCCEEeEecCC-CCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEee
Confidence            478999999999876555311 111111 23356677778999999999999999887774

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=93.98  E-value=0.22  Score=33.05  Aligned_cols=37  Identities=19%  Similarity=0.311  Sum_probs=30.6

Q ss_pred             ceEEE-EecCCCEEEEecCCCcEEEEeCCCCceeeEec
Q psy14456         52 HVLSL-YNWGGATVLSGSHDRTVRFWDLRTRGCTNVLT   88 (93)
Q Consensus        52 ~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~   88 (93)
                      .+.++ ..++..++++.+.|+.+++|++.+++++.+..
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence            45566 66677889999999999999999999887753

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=93.92  E-value=0.61  Score=28.52  Aligned_cols=35  Identities=17%  Similarity=0.266  Sum_probs=26.0

Q ss_pred             ccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCC
Q psy14456          3 DGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCAT   39 (93)
Q Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~   39 (93)
                      ..+|..+.|+|-+.++..+++. - .|+.|++||+..
T Consensus       124 ~s~I~qVlWHPl~~~ds~LVVL-t-sD~~Ir~yDl~~  158 (452)
T 3pbp_A          124 KSSIKKVLFHPKSYRDSCIVVL-K-EDDTITMFDILN  158 (452)
T ss_dssp             CCCEEEEEECTTBGGGCEEEEE-E-TTSCEEEEETTC
T ss_pred             CCceeEEEeccccCCCCeEEEE-e-cCCEEEEEEccc
Confidence            3679999999986554444444 3 499999999875

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=93.87  E-value=0.44  Score=26.64  Aligned_cols=78  Identities=13%  Similarity=0.045  Sum_probs=51.1

Q ss_pred             eeEEEEEecCCCCcceEEEeeeC-CCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEE-EEecCCCcEEEEeCCCCc
Q psy14456          6 VRDVCFIEDTSNKSSLLISGGAG-DCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATV-LSGSHDRTVRFWDLRTRG   82 (93)
Q Consensus         6 v~~~~~~~~~~~~~~~~~~~g~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~-~s~~~~~~i~~~d~~~~~   82 (93)
                      .-.+.|++     +.++.+.|.. +..|+.+|+.+++.+....-.... ... ....+..+ ...-.++.+.++|..+.+
T Consensus        23 tqGL~~~~-----~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~-fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~   96 (243)
T 3mbr_X           23 TEGLFYLR-----GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPY-FGAGIVAWRDRLIQLTWRNHEGFVYDLATLT   96 (243)
T ss_dssp             EEEEEEET-----TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTC-CEEEEEEETTEEEEEESSSSEEEEEETTTTE
T ss_pred             cccEEEEC-----CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCc-ceeEEEEeCCEEEEEEeeCCEEEEEECCcCc
Confidence            44667764     4667777731 258999999999988776532221 222 23333444 444468899999999998


Q ss_pred             eeeEecC
Q psy14456         83 CTNVLTP   89 (93)
Q Consensus        83 ~~~~~~~   89 (93)
                      .+..|..
T Consensus        97 ~~~ti~~  103 (243)
T 3mbr_X           97 PRARFRY  103 (243)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEeC
Confidence            8888763

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=93.75  E-value=0.53  Score=27.15  Aligned_cols=66  Identities=6%  Similarity=-0.002  Sum_probs=41.7

Q ss_pred             eEEEeeeCCCeEEEEeCCCCceeEEeecccc-ceEEEEecCCCEEEEecCCCcEEEEeCCCCceeeEec
Q psy14456         21 LLISGGAGDCKIYVTDCATGQAFQALSGHSG-HVLSLYNWGGATVLSGSHDRTVRFWDLRTRGCTNVLT   88 (93)
Q Consensus        21 ~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~   88 (93)
                      .++.+. .++.+..+|..+++.+........ ....... .+..+..++.++.+.++|.++++.+..+.
T Consensus       279 ~l~~~~-~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~-~~~~l~v~~~~g~l~~~d~~tG~~~~~~~  345 (376)
T 3q7m_A          279 RIYLVD-QNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL-YNGNLVVGDSEGYLHWINVEDGRFVAQQK  345 (376)
T ss_dssp             EEEEEE-TTCCEEEEETTTCCEEEEECTTTTSCCCCCEE-ETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             EEEEEc-CCCeEEEEECCCCcEEEeecccCCCcccCCEE-ECCEEEEEeCCCeEEEEECCCCcEEEEEe
Confidence            344443 478888888888877655442111 1111111 24567777888999999999998766554

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=93.64  E-value=0.23  Score=31.51  Aligned_cols=70  Identities=11%  Similarity=0.081  Sum_probs=48.5

Q ss_pred             eEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCC------c------e-eEEeeccccceEEEEecCCCEEEEecCCCcE
Q psy14456          7 RDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATG------Q------A-FQALSGHSGHVLSLYNWGGATVLSGSHDRTV   73 (93)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~------~------~-~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i   73 (93)
                      -.+..+|+    +++++.+|..+.++.+++.+..      +      . ......-.++....|.++|....|.-.|+++
T Consensus       326 HGv~vsPD----Gkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqv  401 (638)
T 3sbq_A          326 HGCNTSSD----GKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQV  401 (638)
T ss_dssp             CCEEECTT----SCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEE
T ss_pred             cceeeCCC----CCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceE
Confidence            35677788    7888888877999999998732      1      1 2222222334333389989767777799999


Q ss_pred             EEEeCCC
Q psy14456         74 RFWDLRT   80 (93)
Q Consensus        74 ~~~d~~~   80 (93)
                      ..|++..
T Consensus       402 vkWni~~  408 (638)
T 3sbq_A          402 VKWNMEE  408 (638)
T ss_dssp             EEEEHHH
T ss_pred             EEEeccH
Confidence            9999875

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=93.58  E-value=0.47  Score=26.05  Aligned_cols=78  Identities=18%  Similarity=0.091  Sum_probs=49.1

Q ss_pred             eeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCCCcee
Q psy14456          6 VRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRGCT   84 (93)
Q Consensus         6 v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~~~   84 (93)
                      ...++++++    +..++.+....+.|..++.........+.. ......+ .. .+.++++...++.|..+|..+++.+
T Consensus       169 P~gia~d~~----~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~  242 (267)
T 1npe_A          169 PNGLTFDAF----SSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEM  242 (267)
T ss_dssp             EEEEEEETT----TTEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CcEEEEcCC----CCEEEEEECCCCEEEEEecCCCceEEEecC-CCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCce
Confidence            467788886    445544444578899999875433332222 2223455 44 4455555556789999999988887


Q ss_pred             eEecC
Q psy14456         85 NVLTP   89 (93)
Q Consensus        85 ~~~~~   89 (93)
                      ..+..
T Consensus       243 ~~i~~  247 (267)
T 1npe_A          243 DTFHP  247 (267)
T ss_dssp             EEECC
T ss_pred             EEEcc
Confidence            77753

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=93.05  E-value=0.71  Score=26.61  Aligned_cols=68  Identities=10%  Similarity=0.049  Sum_probs=44.0

Q ss_pred             ceEEEeeeCCCeEEEEeCCCCceeEEeecc---------ccceEEEEecCCCEEEEecCCCcEEEEeCCCCceeeEec
Q psy14456         20 SLLISGGAGDCKIYVTDCATGQAFQALSGH---------SGHVLSLYNWGGATVLSGSHDRTVRFWDLRTRGCTNVLT   88 (93)
Q Consensus        20 ~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~   88 (93)
                      ..++... .++.+..+|.++++.+-.....         ...+.......+..+..++.++.+..+|..+|+.+..+.
T Consensus        54 ~~v~~~~-~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~  130 (376)
T 3q7m_A           54 NVVYAAD-RAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTK  130 (376)
T ss_dssp             TEEEEEC-TTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             CEEEEEc-CCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence            3445544 4889999999999876554431         122222222245566677788999999999988765543

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=92.90  E-value=0.62  Score=25.55  Aligned_cols=71  Identities=8%  Similarity=0.052  Sum_probs=44.8

Q ss_pred             eeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCC-CEEEEecCCCcEEEEeCCC
Q psy14456          6 VRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGG-ATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         6 v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~-~~~~s~~~~~~i~~~d~~~   80 (93)
                      ...++|+++    +..++.+...++.|..++.+.................+ +++++ .++++-...+.|.++++..
T Consensus        38 ~~gi~~d~~----~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g  110 (267)
T 1npe_A           38 IIGLAFDCV----DKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG  110 (267)
T ss_dssp             EEEEEEETT----TTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             EEEEEEecC----CCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCC
Confidence            457888876    34444444458899999987654433332222455677 88854 4455555677888888764

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=92.54  E-value=0.54  Score=31.27  Aligned_cols=37  Identities=24%  Similarity=0.345  Sum_probs=27.4

Q ss_pred             ceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEe
Q psy14456          5 TVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQAL   46 (93)
Q Consensus         5 ~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~   46 (93)
                      .+.++...++    ..++++.+ +|+.+|+|++.+++++...
T Consensus       237 ~~~~~~~~~~----~~~lftl~-~D~~LRiWsl~t~~~v~t~  273 (950)
T 4gq2_M          237 TIISMIFLST----YNVLVMLS-LDYKLKVLDLSTNQCVETI  273 (950)
T ss_dssp             CEEEEEEETT----TTEEEEEE-TTCEEEEEETTTTEEEEEE
T ss_pred             eEEEEeecCC----CcEEEEEE-CCCEEEEEECCCCCeEeee
Confidence            3555666655    56777776 7999999999999876544

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=92.34  E-value=0.23  Score=33.54  Aligned_cols=32  Identities=19%  Similarity=0.250  Sum_probs=27.4

Q ss_pred             EecCCCEEEEecCCCcEEEEeCCCCceeeEec
Q psy14456         57 YNWGGATVLSGSHDRTVRFWDLRTRGCTNVLT   88 (93)
Q Consensus        57 ~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~   88 (93)
                      ...+...+++-+.|+.+++|++.+++++.+..
T Consensus       245 ~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D  276 (1139)
T 4fhn_B          245 FLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  276 (1139)
T ss_dssp             EETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred             ccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence            45567888999999999999999999887754

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=92.10  E-value=1.5  Score=28.00  Aligned_cols=58  Identities=12%  Similarity=0.058  Sum_probs=41.4

Q ss_pred             eEEEEeCCCCceeEEeec--cc-------cceEEE-EecCC---CEEEEecCCCcEEEEeCCCCceeeEec
Q psy14456         31 KIYVTDCATGQAFQALSG--HS-------GHVLSL-YNWGG---ATVLSGSHDRTVRFWDLRTRGCTNVLT   88 (93)
Q Consensus        31 ~v~~~~~~~~~~~~~~~~--~~-------~~v~~~-~~~~~---~~~~s~~~~~~i~~~d~~~~~~~~~~~   88 (93)
                      .|..+|.++++.+-.++.  |.       ...... ...++   ..++.++.++.+.++|.++|+.+..+.
T Consensus       284 sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~  354 (677)
T 1kb0_A          284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKN  354 (677)
T ss_dssp             EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred             EEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEecccc
Confidence            589999999988766542  21       112222 33466   678889999999999999998876654

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=91.44  E-value=1.3  Score=26.02  Aligned_cols=77  Identities=10%  Similarity=0.076  Sum_probs=48.1

Q ss_pred             eEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeecc-----cc--ceEEE-E---ecCCCEEEEec-------
Q psy14456          7 RDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGH-----SG--HVLSL-Y---NWGGATVLSGS-------   68 (93)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~-----~~--~v~~~-~---~~~~~~~~s~~-------   68 (93)
                      .+.+|++.    ...+..+....+.|..|+...+.........     ..  ....+ +   .+++.+++...       
T Consensus        16 E~~~wd~~----~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~   91 (334)
T 2p9w_A           16 EDTIYDRT----RQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF   91 (334)
T ss_dssp             SCEEEETT----TTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred             cCccCcCC----CCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence            46788775    3455555546999999998765443322221     11  34677 8   57777776533       


Q ss_pred             ------CCCcEEEEeCC---CCceeeEe
Q psy14456         69 ------HDRTVRFWDLR---TRGCTNVL   87 (93)
Q Consensus        69 ------~~~~i~~~d~~---~~~~~~~~   87 (93)
                            .+..+..+|+.   +++.+...
T Consensus        92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~  119 (334)
T 2p9w_A           92 ADQSSHGASSFHSFNLPLSENSKPVWSV  119 (334)
T ss_dssp             TSCCSSSCCEEEEEESSCCTTCCCSEEE
T ss_pred             cccccCCCCEEEEEcCCcCCCCCEEEEe
Confidence                  26789999998   66655433

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=90.73  E-value=2.1  Score=27.23  Aligned_cols=57  Identities=11%  Similarity=0.039  Sum_probs=39.8

Q ss_pred             eEEEEeCCCCceeEEeec--cc-------cceEEE-EecCCC---EEEEecCCCcEEEEeCCCCceeeEe
Q psy14456         31 KIYVTDCATGQAFQALSG--HS-------GHVLSL-YNWGGA---TVLSGSHDRTVRFWDLRTRGCTNVL   87 (93)
Q Consensus        31 ~v~~~~~~~~~~~~~~~~--~~-------~~v~~~-~~~~~~---~~~s~~~~~~i~~~d~~~~~~~~~~   87 (93)
                      .|..+|.++++.+-.++.  |.       .+.... +..++.   .++.++.++.+.++|.++|+.+..+
T Consensus       271 ~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~  340 (668)
T 1kv9_A          271 SILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAE  340 (668)
T ss_dssp             EEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred             eEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccc
Confidence            489999999998766643  21       222222 333554   5788889999999999999877443

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=90.41  E-value=1.8  Score=25.93  Aligned_cols=69  Identities=10%  Similarity=0.096  Sum_probs=42.4

Q ss_pred             eEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEee-ccccceEEE-EecCCC-EEEEecCCCcEEEEeCC
Q psy14456          7 RDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALS-GHSGHVLSL-YNWGGA-TVLSGSHDRTVRFWDLR   79 (93)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~-~~~~~v~~~-~~~~~~-~~~s~~~~~~i~~~d~~   79 (93)
                      ..++++|+.   +..+++- ..++.|..++...+....... +.......+ |++++. ++++-...+.|..++..
T Consensus       229 ~giavdp~~---g~lyv~d-~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          229 NGAETHPIN---GELYFNS-WNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD  300 (430)
T ss_dssp             CCEEECTTT---CCEEEEE-TTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             eEEEEeCCC---CEEEEEE-CCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence            456677731   4544443 357888888887665422221 122345678 999998 45555677888887765

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=90.37  E-value=1.4  Score=24.59  Aligned_cols=55  Identities=9%  Similarity=0.023  Sum_probs=34.2

Q ss_pred             CCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCCCceeeEe
Q psy14456         28 GDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRGCTNVL   87 (93)
Q Consensus        28 ~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~   87 (93)
                      .++.+..++.. +..+..+......+..+ ...++.+++..   +.+..+| .++.....+
T Consensus       155 ~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~~~~  210 (330)
T 3hxj_A          155 NDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS---DKVYAIN-PDGTEKWNF  210 (330)
T ss_dssp             TTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES---SSEEEEC-TTSCEEEEE
T ss_pred             CCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe---CEEEEEC-CCCcEEEEE
Confidence            47888888887 76655554434444455 55666655544   7778888 566554443

>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A

Probab=90.18  E-value=1.1  Score=29.14  Aligned_cols=35  Identities=9%  Similarity=0.170  Sum_probs=27.9

Q ss_pred             eEEEEecCCCEEEEecCCCcEEEEeCCCCceeeEec
Q psy14456         53 VLSLYNWGGATVLSGSHDRTVRFWDLRTRGCTNVLT   88 (93)
Q Consensus        53 v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~   88 (93)
                      |.++ ..+..++++-+.|+.+++|++++++++....
T Consensus       224 Is~~-~~~~~fLftL~~Dh~LRiWsL~t~~lv~t~D  258 (729)
T 3f7f_A          224 ISCK-LFHERYLIVLTQNCHLKIWDLTSFTLIQDYD  258 (729)
T ss_dssp             EEEE-EETTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             EEEe-ccCCcEEEEEEcCCeEEEEEcCCCceEEeec
Confidence            4444 3357799999999999999999999877654

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=90.06  E-value=0.64  Score=31.48  Aligned_cols=27  Identities=26%  Similarity=0.297  Sum_probs=21.2

Q ss_pred             cceEEEeeeCCCeEEEEeCCCCceeEEe
Q psy14456         19 SSLLISGGAGDCKIYVTDCATGQAFQAL   46 (93)
Q Consensus        19 ~~~~~~~g~~~~~v~~~~~~~~~~~~~~   46 (93)
                      ..++++-+ +|+.+++|++.+++++...
T Consensus       249 ~~~lftL~-~D~~LRiWsl~t~~~v~t~  275 (1139)
T 4fhn_B          249 YNVLVMLS-LDYKLKVLDLSTNQCVETI  275 (1139)
T ss_dssp             TTEEEEEB-TTCEEEEEETTTTEEEEEE
T ss_pred             ccEEEEEe-CCCEEEEEECCCCCeEEee
Confidence            46677776 7999999999988776543

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=89.02  E-value=3.2  Score=26.78  Aligned_cols=71  Identities=15%  Similarity=0.101  Sum_probs=41.6

Q ss_pred             eEEEEEecCCCCcceEEEeeeCC----CeEEEEeCCCCce--eEEee-ccccceEEE-EecCCCEEEEec---CCCcEEE
Q psy14456          7 RDVCFIEDTSNKSSLLISGGAGD----CKIYVTDCATGQA--FQALS-GHSGHVLSL-YNWGGATVLSGS---HDRTVRF   75 (93)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~g~~~----~~v~~~~~~~~~~--~~~~~-~~~~~v~~~-~~~~~~~~~s~~---~~~~i~~   75 (93)
                      ..+.|+|+    ++.++.+....    ..|..+++.++..  ...+. ........+ |+++++.|+...   ....+.+
T Consensus       224 ~~~~WspD----g~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~  299 (751)
T 2xe4_A          224 GEIVWGPD----HTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHL  299 (751)
T ss_dssp             SCCEECSS----TTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEE
T ss_pred             eeEEEecC----CCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEE
Confidence            46789998    55555443211    3577777776542  22222 222334566 999998776443   3356777


Q ss_pred             EeCCCC
Q psy14456         76 WDLRTR   81 (93)
Q Consensus        76 ~d~~~~   81 (93)
                      +|+.++
T Consensus       300 ~d~~~~  305 (751)
T 2xe4_A          300 LDLRKG  305 (751)
T ss_dssp             EESSSC
T ss_pred             EECCCC
Confidence            888765

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=88.18  E-value=1.8  Score=24.22  Aligned_cols=65  Identities=12%  Similarity=0.055  Sum_probs=40.2

Q ss_pred             ceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCce------eEEee--ccccceEEE-EecCCCEEEEecCCCcEEE
Q psy14456          5 TVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQA------FQALS--GHSGHVLSL-YNWGGATVLSGSHDRTVRF   75 (93)
Q Consensus         5 ~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~------~~~~~--~~~~~v~~~-~~~~~~~~~s~~~~~~i~~   75 (93)
                      .+.+++|+|+    +.+.+.  + ++.+.-.+..+...      -..+-  +-+ ...++ |.+++.+.++  .|+.|.-
T Consensus        42 ~~~~laf~P~----G~LYaV--~-~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~-~F~a~~fD~~G~LYav--~dG~iyr  111 (236)
T 1tl2_A           42 NFKFLFLSPG----GELYGV--L-NDKIYKGTPPTHDNDNWMGRAKKIGNGGWN-QFQFLFFDPNGYLYAV--SKDKLYK  111 (236)
T ss_dssp             TCSEEEECTT----SCEEEE--E-TTEEEEESCCCSTTCCHHHHCEEEECSCGG-GCSEEEECTTSCEEEE--ETTEEEE
T ss_pred             cceeEEECCC----ccEEEE--e-CCeEEEECCCCCCcccccccccEecccccc-cceEEEECCCCCEEEe--CCCEEEE
Confidence            4678999997    665554  3 78777666544211      11110  111 24677 8999988877  5688877


Q ss_pred             EeCC
Q psy14456         76 WDLR   79 (93)
Q Consensus        76 ~d~~   79 (93)
                      ++-.
T Consensus       112 ~~pP  115 (236)
T 1tl2_A          112 ASPP  115 (236)
T ss_dssp             ESCC
T ss_pred             eCCC
Confidence            7653

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=87.67  E-value=2.9  Score=24.62  Aligned_cols=77  Identities=8%  Similarity=-0.027  Sum_probs=45.2

Q ss_pred             eeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCCCcee
Q psy14456          6 VRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRGCT   84 (93)
Q Consensus         6 v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~~~   84 (93)
                      -..++++|+    +..++.+....+.|..++++.......+.........+ +. .+.++.+-...+.|..++..++...
T Consensus       248 PnGlavd~~----~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~  322 (386)
T 3v65_B          248 PNGLTIDYA----GRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQ  322 (386)
T ss_dssp             EEEEEEEGG----GTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSC
T ss_pred             eeeEEEeCC----CCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE-CCEEEEeeCCCCeEEEEECCCCcce
Confidence            467888876    44454445467888888876433322222223344556 53 4455566667778888886666544


Q ss_pred             eEe
Q psy14456         85 NVL   87 (93)
Q Consensus        85 ~~~   87 (93)
                      ..+
T Consensus       323 ~~i  325 (386)
T 3v65_B          323 EII  325 (386)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            444

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=87.14  E-value=2.7  Score=23.65  Aligned_cols=72  Identities=13%  Similarity=0.085  Sum_probs=44.2

Q ss_pred             ceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCC--CcEEEEeCCCC
Q psy14456          5 TVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHD--RTVRFWDLRTR   81 (93)
Q Consensus         5 ~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~--~~i~~~d~~~~   81 (93)
                      ....++|+++    +..+++.. .++.|..++.+.. ....+. -......+ +.++++++++....  ..+..+|..++
T Consensus        33 ~pegia~~~~----g~lyv~d~-~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g  105 (306)
T 2p4o_A           33 FLENLASAPD----GTIFVTNH-EVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDG  105 (306)
T ss_dssp             CEEEEEECTT----SCEEEEET-TTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTS
T ss_pred             CcceEEECCC----CCEEEEeC-CCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCC
Confidence            3567788876    56555543 5888988887643 222222 23456778 88888876655332  24666776666


Q ss_pred             ce
Q psy14456         82 GC   83 (93)
Q Consensus        82 ~~   83 (93)
                      ..
T Consensus       106 ~~  107 (306)
T 2p4o_A          106 TV  107 (306)
T ss_dssp             CE
T ss_pred             eE
Confidence            54

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=86.23  E-value=4.7  Score=25.53  Aligned_cols=65  Identities=14%  Similarity=0.187  Sum_probs=40.7

Q ss_pred             cceEEEeeeCCCeEEEEeCCCCceeE--EeeccccceEEE-EecCCCEEEEec-CC-----CcEEEEeCCCCcee
Q psy14456         19 SSLLISGGAGDCKIYVTDCATGQAFQ--ALSGHSGHVLSL-YNWGGATVLSGS-HD-----RTVRFWDLRTRGCT   84 (93)
Q Consensus        19 ~~~~~~~g~~~~~v~~~~~~~~~~~~--~~~~~~~~v~~~-~~~~~~~~~s~~-~~-----~~i~~~d~~~~~~~   84 (93)
                      +..++.+|..+..+.+||..+..-..  .+...... ... ..+++..++.|+ .+     ..+.+||..++...
T Consensus       254 g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~-~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~  327 (656)
T 1k3i_A          254 GQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGY-QSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWT  327 (656)
T ss_dssp             SCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSS-CEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred             CCEEEeCCCCCCceEEecCcCCceeECCCCCccccc-cceEEecCCeEEEEeCcccCCcccccceEeCCCCCcce
Confidence            67777877556789999987664322  12111111 223 455788888877 34     56899999876543

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=85.94  E-value=4.8  Score=25.45  Aligned_cols=65  Identities=14%  Similarity=0.168  Sum_probs=39.4

Q ss_pred             cceEEEeeeCC----------CeEEEEeCCCCce--eEEeec-cccceEEE-EecCCCEEEEec-CCCcEEEEeCCCCce
Q psy14456         19 SSLLISGGAGD----------CKIYVTDCATGQA--FQALSG-HSGHVLSL-YNWGGATVLSGS-HDRTVRFWDLRTRGC   83 (93)
Q Consensus        19 ~~~~~~~g~~~----------~~v~~~~~~~~~~--~~~~~~-~~~~v~~~-~~~~~~~~~s~~-~~~~i~~~d~~~~~~   83 (93)
                      ++.++.+|...          ..+.+||..+++.  +..+.. +....... +..++.+++.|+ .+..+.+||..+...
T Consensus       198 g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W  277 (656)
T 1k3i_A          198 GRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSW  277 (656)
T ss_dssp             TEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEE
T ss_pred             CEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCCce
Confidence            56666665311          1578899877643  222322 22222234 567888888887 456899999887653

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=85.71  E-value=4.8  Score=25.20  Aligned_cols=67  Identities=12%  Similarity=0.084  Sum_probs=41.0

Q ss_pred             eEEEeeeCCCeEEEEeCCCCceeEEeeccc--c--ceEEE-EecCCCEEEEecC-----CCcEEEEeCCCCceeeEec
Q psy14456         21 LLISGGAGDCKIYVTDCATGQAFQALSGHS--G--HVLSL-YNWGGATVLSGSH-----DRTVRFWDLRTRGCTNVLT   88 (93)
Q Consensus        21 ~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~--~--~v~~~-~~~~~~~~~s~~~-----~~~i~~~d~~~~~~~~~~~   88 (93)
                      .++... .++.+..+|..+++.+-......  .  .+..- .-.++..++....     ++.+..+|.++|+.+-.+.
T Consensus       117 ~v~v~~-~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  193 (571)
T 2ad6_A          117 QIVKKQ-ANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAF  193 (571)
T ss_dssp             EEEEEC-TTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             EEEEEe-CCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEc
Confidence            444444 48999999999998876543211  0  12111 1124444433332     7899999999998876664

>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A

Probab=85.67  E-value=3.1  Score=27.19  Aligned_cols=27  Identities=19%  Similarity=0.217  Sum_probs=21.5

Q ss_pred             cceEEEeeeCCCeEEEEeCCCCceeEEe
Q psy14456         19 SSLLISGGAGDCKIYVTDCATGQAFQAL   46 (93)
Q Consensus        19 ~~~~~~~g~~~~~v~~~~~~~~~~~~~~   46 (93)
                      ..++++-+ +|..+|+|++.+++++...
T Consensus       231 ~~fLftL~-~Dh~LRiWsL~t~~lv~t~  257 (729)
T 3f7f_A          231 ERYLIVLT-QNCHLKIWDLTSFTLIQDY  257 (729)
T ss_dssp             TTEEEEEE-TTCEEEEEETTTTEEEEEE
T ss_pred             CcEEEEEE-cCCeEEEEEcCCCceEEee
Confidence            45677766 7999999999999876554

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=85.01  E-value=3.6  Score=23.20  Aligned_cols=75  Identities=16%  Similarity=0.003  Sum_probs=42.4

Q ss_pred             eEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCc--eeEEeeccccceEEE-EecCCCEEEEecC----------CCcE
Q psy14456          7 RDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQ--AFQALSGHSGHVLSL-YNWGGATVLSGSH----------DRTV   73 (93)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~--~~~~~~~~~~~v~~~-~~~~~~~~~s~~~----------~~~i   73 (93)
                      ..++++|+    ++.++.+....+.|..+++....  ....+....+ ...+ +.+++.++++...          .+.+
T Consensus       188 ~gia~~~d----g~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v  262 (322)
T 2fp8_A          188 GGAEVSAD----SSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKG  262 (322)
T ss_dssp             CEEEECTT----SSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEE
T ss_pred             cceEECCC----CCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccccCCCccEE
Confidence            45677777    55444443347889988876421  1111211122 5567 8888887766543          3557


Q ss_pred             EEEeCCCCceeeEe
Q psy14456         74 RFWDLRTRGCTNVL   87 (93)
Q Consensus        74 ~~~d~~~~~~~~~~   87 (93)
                      ..+|.. ++.+..+
T Consensus       263 ~~~d~~-G~~~~~~  275 (322)
T 2fp8_A          263 IKFDEF-GNILEVI  275 (322)
T ss_dssp             EEECTT-SCEEEEE
T ss_pred             EEECCC-CCEEEEE
Confidence            777763 5554444

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=84.00  E-value=6.5  Score=25.33  Aligned_cols=76  Identities=16%  Similarity=-0.005  Sum_probs=42.1

Q ss_pred             eEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEee--ccccceEEE-EecCCCEEEEecCCCcEEEEeCCCCce
Q psy14456          7 RDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALS--GHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRGC   83 (93)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~--~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~~   83 (93)
                      ..++|+|+    +..|+.+....+.|..++++.......+.  ........+ +..+ .++.+-...+.|..++..++..
T Consensus       543 nGlavd~~----~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~  617 (699)
T 1n7d_A          543 NGITLDLL----SGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSD  617 (699)
T ss_dssp             CCEEECTT----TCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEE
T ss_pred             cEEEEecc----CCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCc
Confidence            46788876    34444444457888888876433222221  111222333 4333 4455556678888888877766


Q ss_pred             eeEe
Q psy14456         84 TNVL   87 (93)
Q Consensus        84 ~~~~   87 (93)
                      +..+
T Consensus       618 ~~~i  621 (699)
T 1n7d_A          618 VNLL  621 (699)
T ss_dssp             EECC
T ss_pred             eEEe
Confidence            5555

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=82.03  E-value=5.9  Score=23.34  Aligned_cols=73  Identities=11%  Similarity=0.059  Sum_probs=41.0

Q ss_pred             ceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecC-CCEEEEecCCCcEEEEeCCCC
Q psy14456          5 TVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWG-GATVLSGSHDRTVRFWDLRTR   81 (93)
Q Consensus         5 ~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~-~~~~~s~~~~~~i~~~d~~~~   81 (93)
                      ....++|.+.    ...++-+....+.|..++++.......+.........+ +.+. +.+..+-...+.|.+.++...
T Consensus       117 ~~~gl~~d~~----~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~  191 (386)
T 3v65_B          117 NAIALDFHHR----RELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA  191 (386)
T ss_dssp             CEEEEEEETT----TTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSC
T ss_pred             ccEEEEEecC----CCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCC
Confidence            4567888875    34444444457888888877654333222222233455 6764 444455556667777776543

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=81.49  E-value=5.1  Score=22.30  Aligned_cols=57  Identities=12%  Similarity=0.057  Sum_probs=37.0

Q ss_pred             CCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCCCceeeEe
Q psy14456         28 GDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRGCTNVL   87 (93)
Q Consensus        28 ~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~   87 (93)
                      .++.+..+|.. +............+..+ ..+++.+ ..++.++.+..+|.. +.....+
T Consensus       115 ~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l-~vgt~~~~l~~~d~~-g~~~~~~  172 (330)
T 3hxj_A          115 MDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTI-YVGSNDNYLYAINPD-GTEKWRF  172 (330)
T ss_dssp             TTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCE-EEECTTSEEEEECTT-SCEEEEE
T ss_pred             cCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEE-EEEcCCCEEEEECCC-CCEeEEE
Confidence            47889999987 76655554444444444 5556664 445667889999988 6654444

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=80.10  E-value=8.5  Score=23.97  Aligned_cols=68  Identities=10%  Similarity=0.128  Sum_probs=39.9

Q ss_pred             eEEEEEecCCCCcceEEEeeeCCCeEEEEeCC-------CCce-----------eEEe-e-ccccceEEE-EecCCCE-E
Q psy14456          7 RDVCFIEDTSNKSSLLISGGAGDCKIYVTDCA-------TGQA-----------FQAL-S-GHSGHVLSL-YNWGGAT-V   64 (93)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~-------~~~~-----------~~~~-~-~~~~~v~~~-~~~~~~~-~   64 (93)
                      ..++.+|++   +.++++- ..++.|..+|+.       ++..           ...+ . +.......+ |++++.. .
T Consensus       250 ~giavdp~~---g~LYvtd-~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lY  325 (496)
T 3kya_A          250 NGATIHPIN---GELYFNS-YEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAY  325 (496)
T ss_dssp             CCEEECTTT---CCEEEEE-TTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEE
T ss_pred             eEEEEcCCC---CeEEEEE-CCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEE
Confidence            345566642   3444444 468889999886       4433           1122 1 223344678 9999984 4


Q ss_pred             EEecCCCcEEEEeC
Q psy14456         65 LSGSHDRTVRFWDL   78 (93)
Q Consensus        65 ~s~~~~~~i~~~d~   78 (93)
                      ++=...+.|+.++.
T Consensus       326 vaD~~~h~I~kid~  339 (496)
T 3kya_A          326 FGVINNHYFMRSDY  339 (496)
T ss_dssp             EEETTTTEEEEEEE
T ss_pred             EEeCCCCEEEEEec
Confidence            45556778888554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	93
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	9e-10
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-06
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-09
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-08
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-05
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	7e-04
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	8e-09
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-05
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	4e-08
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	9e-07
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	4e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	5e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	9e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.002
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	6e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	0.002
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	9e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	5e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-05
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	3e-05
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	7e-05
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	9e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	0.001

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 51.3 bits (121), Expect = 9e-10
 Identities = 20/78 (25%), Positives = 28/78 (35%), Gaps = 6/78 (7%)

Query: 1   MHDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNW 59
                +  V F    S    LL++G   D    V D         L+GH   V  L    
Sbjct: 268 NIICGITSVSF----SKSGRLLLAGYD-DFNCNVWDALKADRAGVLAGHDNRVSCLGVTD 322

Query: 60  GGATVLSGSHDRTVRFWD 77
            G  V +GS D  ++ W+
Sbjct: 323 DGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.0 bits (97), Expect = 2e-06
 Identities = 14/89 (15%), Positives = 29/89 (32%), Gaps = 6/89 (6%)

Query: 2   HDGTVRDVCFIEDTSNKSSLLISGGA-GDCKIYVTDCATGQAFQALSGHSGHVLSL-YNW 59
           H+  +  +CF        +   +G     C+++           +       + S+ ++ 
Sbjct: 225 HESDINAICF----FPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK 280

Query: 60  GGATVLSGSHDRTVRFWDLRTRGCTNVLT 88
            G  +L+G  D     WD        VL 
Sbjct: 281 SGRLLLAGYDDFNCNVWDALKADRAGVLA 309

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.1 bits (118), Expect = 2e-09
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 6/77 (7%)

Query: 2   HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWG 60
           HD  VR V F     +    ++S    D  + V D    +  + L+ H   V SL ++  
Sbjct: 246 HDNWVRGVLF----HSGGKFILSCAD-DKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKT 300

Query: 61  GATVLSGSHDRTVRFWD 77
              V++GS D+TV+ W+
Sbjct: 301 APYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.7 bits (109), Expect = 3e-08
 Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 1/74 (1%)

Query: 16  SNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVR 74
           S K    +  G+ D  I + D +TG     L GH   V  + ++ GG  +LS + D+T+R
Sbjct: 213 SGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLR 272

Query: 75  FWDLRTRGCTNVLT 88
            WD + + C   L 
Sbjct: 273 VWDYKNKRCMKTLN 286

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.2 bits (87), Expect = 4e-05
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 44 QALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRGCTNVLT 88
           ALSGH   V  + ++   + ++S S D T++ WD  T      L 
Sbjct: 11 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLK 56

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.7 bits (78), Expect = 7e-04
 Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 5/58 (8%)

Query: 2  HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNW 59
          H   V  V F        S+++S    D  I V D  TG   + L GH+  V  +   
Sbjct: 16 HRSPVTRVIF----HPVFSVMVSASE-DATIKVWDYETGDFERTLKGHTDSVQDISFD 68

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.6 bits (114), Expect = 8e-09
 Identities = 18/86 (20%), Positives = 27/86 (31%), Gaps = 12/86 (13%)

Query: 1   MHDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL---- 56
            H   V  V      +     ++SG   D  +   D  +G     L GH   V+S+    
Sbjct: 306 GHKDFVLSVAT----TQNDEYILSGSK-DRGVLFWDKKSGNPLLMLQGHRNSVISVAVAN 360

Query: 57  ---YNWGGATVLSGSHDRTVRFWDLR 79
                       +GS D   R W  +
Sbjct: 361 GSSLGPEYNVFATGSGDCKARIWKYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.6 bits (88), Expect = 3e-05
 Identities = 22/100 (22%), Positives = 34/100 (34%), Gaps = 18/100 (18%)

Query: 2   HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSG------------H 49
           H  +V  V F    +     ++SG   D  + + +                        H
Sbjct: 253 HKDSVYSVVF----TRDGQSVVSGSL-DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGH 307

Query: 50  SGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRGCTNVLT 88
              VLS+        +LSGS DR V FWD ++     +L 
Sbjct: 308 KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ 347

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (109), Expect = 4e-08
 Identities = 15/53 (28%), Positives = 25/53 (47%)

Query: 36 DCATGQAFQALSGHSGHVLSLYNWGGATVLSGSHDRTVRFWDLRTRGCTNVLT 88
               ++ + L GH  HV++   + G  ++SGS D T++ W   T  C   L 
Sbjct: 2  RRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLV 54

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (99), Expect = 9e-07
 Identities = 15/79 (18%), Positives = 30/79 (37%), Gaps = 7/79 (8%)

Query: 1   MHDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNW 59
           +H+  V  + F    +      +S G  D  +       G +    S  S  VLS   + 
Sbjct: 263 LHESCVLSLKF----AYCGKWFVSTGK-DNLLNAWRTPYGASIF-QSKESSSVLSCDISV 316

Query: 60  GGATVLSGSHDRTVRFWDL 78
               +++GS D+    +++
Sbjct: 317 DDKYIVTGSGDKKATVYEV 335

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.0 bits (94), Expect = 4e-06
 Identities = 12/80 (15%), Positives = 27/80 (33%), Gaps = 3/80 (3%)

Query: 1   MHDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYN-- 58
           + +       F    S   + + S  A D  I + + AT +  + +   +          
Sbjct: 232 LKNVAHSGSVFGLTWSPDGTKIASASA-DKTIKIWNVATLKVEKTIPVGTRIEDQQLGII 290

Query: 59  WGGATVLSGSHDRTVRFWDL 78
           W    ++S S +  + F + 
Sbjct: 291 WTKQALVSISANGFINFVNP 310

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.6 bits (93), Expect = 5e-06
 Identities = 10/43 (23%), Positives = 21/43 (48%)

Query: 46 LSGHSGHVLSLYNWGGATVLSGSHDRTVRFWDLRTRGCTNVLT 88
          L GH   V++   +    V++G+ D+ +R +D   +     L+
Sbjct: 8  LRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLS 50

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.5 bits (77), Expect = 9e-04
 Identities = 29/82 (35%), Positives = 38/82 (46%), Gaps = 6/82 (7%)

Query: 2  HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWGG 61
          H  +V      ED       +I+G   D  I V D    +    LSGH G V +L    G
Sbjct: 11 HMTSVITCLQFEDN-----YVITGAD-DKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG 64

Query: 62 ATVLSGSHDRTVRFWDLRTRGC 83
            ++SGS DRTVR WD++   C
Sbjct: 65 GILVSGSTDRTVRVWDIKKGCC 86

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 33.3 bits (74), Expect = 0.002
 Identities = 11/79 (13%), Positives = 27/79 (34%), Gaps = 3/79 (3%)

Query: 1   MHDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQA-LSGHSGHVLSLYNW 59
                  ++  I       ++L+SG   + +  + +  +G+   A +   +  + S+   
Sbjct: 276 KFSYHHTNLSAITTFYVSDNILVSGS--ENQFNIYNLRSGKLVHANILKDADQIWSVNFK 333

Query: 60  GGATVLSGSHDRTVRFWDL 78
           G   V +   D       L
Sbjct: 334 GKTLVAAVEKDGQSFLEIL 352

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 6e-06
 Identities = 22/82 (26%), Positives = 30/82 (36%), Gaps = 10/82 (12%)

Query: 5   TVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQA---------LSGHSGHVLS 55
            +     +       +  I  GA D KI V D       +A         L  HSG V  
Sbjct: 213 VLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFR 272

Query: 56  LYNWGGATVLSGSHDRTVRFWD 77
           L  +    ++S SHD T+  WD
Sbjct: 273 L-QFDEFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 1e-05
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 41 QAFQALSGHSGHVLSLYNWGGATVLSGSHDRTVRFWDLRTRGCTNVLT 88
          Q     S  S  V  L  +    ++SG  D T++ WD  T  C  +LT
Sbjct: 6  QRIHCRSETSKGVYCL-QYDDQKIVSGLRDNTIKIWDKNTLECKRILT 52

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.7 bits (75), Expect = 0.002
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 27  AGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWGGATVLSGSHDRTVRFWDLRTRGC 83
           +GD  I V + +T +  + L+GH   +     +    V+SGS D T+R WD+    C
Sbjct: 155 SGDRTIKVWNTSTCEFVRTLNGHKRGIAC-LQYRDRLVVSGSSDNTIRLWDIECGAC 210

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.9 bits (91), Expect = 9e-06
 Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 5/82 (6%)

Query: 1   MHDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHV----LSL 56
             D           +   S    + GA D  I V D  T +  Q  +     +    + +
Sbjct: 245 EDDQEPVQGGIFALSWLDSQKFATVGA-DATIRVWDVTTSKCVQKWTLDKQQLGNQQVGV 303

Query: 57  YNWGGATVLSGSHDRTVRFWDL 78
              G   ++S S D T+ F++L
Sbjct: 304 VATGNGRIISLSLDGTLNFYEL 325

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.8 bits (88), Expect = 2e-05
 Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 1/50 (2%)

Query: 40 GQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRGCTNVLT 88
          G   Q   GH+  + +L  +  G T+ S   +  +  WD+ T     V  
Sbjct: 2  GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFP 51

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 35.3 bits (79), Expect = 4e-04
 Identities = 13/83 (15%), Positives = 27/83 (32%), Gaps = 6/83 (7%)

Query: 2  HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALS-GHSGHVLSLYNWG 60
          H+  +  +      S     L S  A +  I   D +TG + +     H+  +  +    
Sbjct: 11 HNKAITALSS----SADGKTLFSADA-EGHINSWDISTGISNRVFPDVHATMITGIKTTS 65

Query: 61 GATVLSGSHDRTVRFWDLRTRGC 83
             + + S D  ++       G 
Sbjct: 66 KGDLFTVSWDDHLKVVPAGGSGV 88

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 35.0 bits (78), Expect = 5e-04
 Identities = 10/56 (17%), Positives = 22/56 (39%), Gaps = 3/56 (5%)

Query: 26  GAGDCKIYVTDCATGQAFQALSGHSGH---VLSLYNWGGATVLSGSHDRTVRFWDL 78
           G+ D  + V +         +   +     V S+      T++S   D  ++FW++
Sbjct: 242 GSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.8 bits (88), Expect = 2e-05
 Identities = 12/53 (22%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 26  GAGDCKIYVTDCAT-GQAFQALSGHSGHVLSLYNWGGATVLSGSHDRTVRFWD 77
           G+ D  I++       +  +AL+ H   V +L     +T++S   D  ++ W+
Sbjct: 233 GSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWN 285

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.7 bits (88), Expect = 3e-05
 Identities = 6/48 (12%), Positives = 15/48 (31%), Gaps = 1/48 (2%)

Query: 41 QAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRGCTNVL 87
          Q  Q       ++  +      + +L  S D ++  +    +     L
Sbjct: 2  QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDL 49

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 38.3 bits (87), Expect = 3e-05
 Identities = 8/87 (9%), Positives = 24/87 (27%), Gaps = 7/87 (8%)

Query: 2   HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWG 60
            + ++           + +    G      +   D  T +    ++    ++  L  +  
Sbjct: 272 LESSILIYSVPVH--GEFAAYYQGAPEKGVLLKYDVKTRK----VTEVKNNLTDLRLSAD 325

Query: 61  GATVLSGSHDRTVRFWDLRTRGCTNVL 87
             TV+    D  +  + L        +
Sbjct: 326 RKTVMVRKDDGKIYTFPLEKPEDERTV 352

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.5 bits (85), Expect = 7e-05
 Identities = 10/73 (13%), Positives = 23/73 (31%), Gaps = 4/73 (5%)

Query: 6  VRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATV 64
          +    +     +++ + I     +  IY            L  H+G V  + +      +
Sbjct: 10 ISCHAW---NKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRI 66

Query: 65 LSGSHDRTVRFWD 77
          ++   DR    W 
Sbjct: 67 VTCGTDRNAYVWT 79

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 36.1 bits (82), Expect = 2e-04
 Identities = 17/95 (17%), Positives = 27/95 (28%), Gaps = 9/95 (9%)

Query: 2   HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGH---------SGH 52
            DG+  D      +      L +  AG  + +V+    G       G          SG 
Sbjct: 18  SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLSLAVAGHSGS 77

Query: 53  VLSLYNWGGATVLSGSHDRTVRFWDLRTRGCTNVL 87
             +L +   A    G     V  +D  T      +
Sbjct: 78  DFALASTSFARSAKGKRTDYVEVFDPVTFLPIADI 112

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.4 bits (77), Expect = 9e-04
 Identities = 10/58 (17%), Positives = 22/58 (37%), Gaps = 7/58 (12%)

Query: 31 KIYVTDCATGQAFQALSGHSGHVLSLYNWGGATVLSGSHDRTVRFWDLRTRGCTNVLT 88
          K+++     G+       H   + S+ +   +  +S S D  ++ WD +     N   
Sbjct: 1  KVFIATANAGK------AHDADIFSV-SACNSFTVSCSGDGYLKVWDNKLLDNENPKD 51

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.1 bits (76), Expect = 0.001
 Identities = 14/101 (13%), Positives = 26/101 (25%), Gaps = 21/101 (20%)

Query: 2   HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALS------GHSGHV-- 53
           HD  +  V         +S  +S   GD  + V D                  H   +  
Sbjct: 13  HDADIFSVSA------CNSFTVSCS-GDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHH 65

Query: 54  ------LSLYNWGGATVLSGSHDRTVRFWDLRTRGCTNVLT 88
                 +    +    V + S    + F+ +     T  + 
Sbjct: 66  VDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVI 106

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	93
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.84
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.72
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.72
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.72
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.72
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.72
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.71
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.69
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.69
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.68
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.68
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.68
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.68
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.67
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.66
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.62
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.61
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.61
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.6
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.6
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.59
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.58
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.58
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.54
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.52
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.44
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.33
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.24
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.22
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.21
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.21
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.2
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.17
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.14
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.13
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.1
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.08
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.05
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.05
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.0
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.81
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	98.8
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.79
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.78
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	98.69
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.5
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.42
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.41
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.35
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	97.77
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	97.2
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	97.16
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	97.03
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	96.95
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	96.03
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	95.9
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	95.85
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	95.58
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.37
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	95.14
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	94.89
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	94.65
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	94.51
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.37
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	94.17
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	93.94
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	93.35
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	93.29
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	92.31
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	92.25
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	92.17
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	92.06
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	91.24
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	90.63
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	90.38
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	85.89

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=4e-20  Score=105.87  Aligned_cols=85  Identities=31%  Similarity=0.458  Sum_probs=75.3

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCC---eEEEEeCCCCceeEEee-------------ccccceEEE-EecCCCEE
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDC---KIYVTDCATGQAFQALS-------------GHSGHVLSL-YNWGGATV   64 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~---~v~~~~~~~~~~~~~~~-------------~~~~~v~~~-~~~~~~~~   64 (93)
                      |+.+|.+++|+|+    ++++++++. |+   .+++||+++++.+..+.             +|.+.|.++ |+|+++++
T Consensus       230 h~~~V~~l~~spd----g~~l~sgs~-D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l  304 (393)
T d1sq9a_         230 NSNSIRSVKFSPQ----GSLLAIAHD-SNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETL  304 (393)
T ss_dssp             CCCCEEEEEECSS----TTEEEEEEE-ETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEE
T ss_pred             ccceEEEcccccc----cceeeeecC-CCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCee
Confidence            7889999999999    788888764 65   58999999987766653             799999999 99999999


Q ss_pred             EEecCCCcEEEEeCCCCceeeEecCcc
Q psy14456         65 LSGSHDRTVRFWDLRTRGCTNVLTPIT   91 (93)
Q Consensus        65 ~s~~~~~~i~~~d~~~~~~~~~~~~~~   91 (93)
                      ++++.|+.|++||++++++++++.+|.
T Consensus       305 ~S~s~D~~v~vWd~~~g~~~~~l~gH~  331 (393)
T d1sq9a_         305 CSAGWDGKLRFWDVKTKERITTLNMHC  331 (393)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEECCG
T ss_pred             EEECCCCEEEEEECCCCCEEEEECCcC
Confidence            999999999999999999999998875

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.72  E-value=8.9e-17  Score=90.92  Aligned_cols=84  Identities=25%  Similarity=0.383  Sum_probs=71.1

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEee------------------ccccceEEE-EecCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALS------------------GHSGHVLSL-YNWGGA   62 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~------------------~~~~~v~~~-~~~~~~   62 (93)
                      |++.|+|++|+|+    ++++++ |+ |+.|++|++.+++.+..+.                  .|...|.++ |++++.
T Consensus        61 H~~~V~~l~fs~d----g~~las-g~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~  134 (388)
T d1erja_          61 HTSVVCCVKFSND----GEYLAT-GC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK  134 (388)
T ss_dssp             CSSCCCEEEECTT----SSEEEE-EC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSS
T ss_pred             CCCcEEEEEECCC----CCEEEE-Ee-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCC
Confidence            8899999999998    777666 54 8999999999887665543                  355668999 999999


Q ss_pred             EEEEecCCCcEEEEeCCCCceeeEecCcc
Q psy14456         63 TVLSGSHDRTVRFWDLRTRGCTNVLTPIT   91 (93)
Q Consensus        63 ~~~s~~~~~~i~~~d~~~~~~~~~~~~~~   91 (93)
                      ++++++.|+.+++||...++....+..|.
T Consensus       135 ~l~s~~~dg~v~i~~~~~~~~~~~~~~h~  163 (388)
T d1erja_         135 FLATGAEDRLIRIWDIENRKIVMILQGHE  163 (388)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred             cceeccccccccccccccccccccccccc
Confidence            99999999999999999998888777654

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.72  E-value=3.8e-17  Score=92.86  Aligned_cols=77  Identities=13%  Similarity=0.268  Sum_probs=67.3

Q ss_pred             ccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCc--eeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCC
Q psy14456          3 DGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQ--AFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLR   79 (93)
Q Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~--~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~   79 (93)
                      -++|+|++|+|+    ++.+++++ .++.|++|+...++  .+..+.+|.+.|.++ |+|+++++++++.|+.+++||+.
T Consensus         7 ~~pIt~~~~s~d----g~~la~~~-~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~   81 (371)
T d1k8kc_           7 VEPISCHAWNKD----RTQIAICP-NNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK   81 (371)
T ss_dssp             SSCCCEEEECTT----SSEEEEEC-SSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred             CCCeEEEEECCC----CCEEEEEe-CCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeec
Confidence            478999999999    78887776 59999999998764  567788999999999 99999999999999999999998


Q ss_pred             CCcee
Q psy14456         80 TRGCT   84 (93)
Q Consensus        80 ~~~~~   84 (93)
                      ++...
T Consensus        82 ~~~~~   86 (371)
T d1k8kc_          82 GRTWK   86 (371)
T ss_dssp             TTEEE
T ss_pred             ccccc
Confidence            76543

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=2.4e-17  Score=90.32  Aligned_cols=71  Identities=31%  Similarity=0.507  Sum_probs=66.1

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEe
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWD   77 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d   77 (93)
                      |...|.+++|+|+    ++++++++ .|+.|++||+++++++..+.+|.+.|.++ |++++..+++++.|+.|++||
T Consensus       246 ~~~~v~~~~~~~~----~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         246 HDNWVRGVLFHSG----GKFILSCA-DDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             CSSCEEEEEECSS----SSCEEEEE-TTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             CCCCEEEEEECCC----CCEEEEEE-CCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            6788999999998    78888877 59999999999999999999999999999 999999999999999999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.72  E-value=1.4e-16  Score=89.07  Aligned_cols=84  Identities=29%  Similarity=0.462  Sum_probs=73.1

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEe-------eccccceEEE-EecCCCEEEEecCCCcE
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQAL-------SGHSGHVLSL-YNWGGATVLSGSHDRTV   73 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~-------~~~~~~v~~~-~~~~~~~~~s~~~~~~i   73 (93)
                      |+..|+++.|+|+    ++.+++++ .|+.+++|+...+.....+       .+|.+.|.++ |+++++++++++.|+.+
T Consensus       188 ~~~~i~~v~~~p~----~~~l~~~~-~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v  262 (311)
T d1nr0a1         188 HTKFVHSVRYNPD----GSLFASTG-GDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTI  262 (311)
T ss_dssp             CSSCEEEEEECTT----SSEEEEEE-TTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             ccccccccccCcc----cccccccc-ccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeE
Confidence            6789999999998    78888876 5999999999988766554       3578899999 99999999999999999


Q ss_pred             EEEeCCCCceeeEecCc
Q psy14456         74 RFWDLRTRGCTNVLTPI   90 (93)
Q Consensus        74 ~~~d~~~~~~~~~~~~~   90 (93)
                      ++||++++++++.+..+
T Consensus       263 ~iwd~~t~~~~~~l~~~  279 (311)
T d1nr0a1         263 KIWNVATLKVEKTIPVG  279 (311)
T ss_dssp             EEEETTTTEEEEEEECC
T ss_pred             EEEECCCCcEEEEEECC
Confidence            99999999998887654

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.72  E-value=8.3e-17  Score=90.19  Aligned_cols=85  Identities=26%  Similarity=0.382  Sum_probs=71.4

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-Ee---cCCCEEEEecCCCcEEEEe
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YN---WGGATVLSGSHDRTVRFWD   77 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~---~~~~~~~s~~~~~~i~~~d   77 (93)
                      |...|.+++|+|+.   +..+++++ .|+.|++||.++++.+..+.+|...+..+ |+   +++.++++++.|+.+++||
T Consensus       204 ~~~~v~~v~~~pd~---~~~l~s~~-~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd  279 (325)
T d1pgua1         204 QGSFVRDVEFSPDS---GEFVITVG-SDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWD  279 (325)
T ss_dssp             TTCCEEEEEECSTT---CCEEEEEE-TTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEE
T ss_pred             CCCccEEeeecccc---ceeccccc-cccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEE
Confidence            56789999999974   56666666 69999999999999999998888776544 44   6788999999999999999


Q ss_pred             CCCCceeeEecCc
Q psy14456         78 LRTRGCTNVLTPI   90 (93)
Q Consensus        78 ~~~~~~~~~~~~~   90 (93)
                      ++++++++.+..+
T Consensus       280 ~~~~~~~~~~~~~  292 (325)
T d1pgua1         280 VTTSKCVQKWTLD  292 (325)
T ss_dssp             TTTTEEEEEEECC
T ss_pred             CCCCCEEEEEEec
Confidence            9999998887654

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.71  E-value=1.4e-16  Score=88.36  Aligned_cols=75  Identities=28%  Similarity=0.383  Sum_probs=69.6

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      |++.|++++|+|+    ++++++++ .||.|++||+.+++.+..+..|...|.++ |+|++.++++++.|+.+.+|+...
T Consensus        54 H~~~I~~l~~s~~----~~~l~sgs-~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~  128 (340)
T d1tbga_          54 HLAKIYAMHWGTD----SRLLVSAS-QDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKT  128 (340)
T ss_dssp             CSSCEEEEEECTT----SSEEEEEE-TTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSS
T ss_pred             CCCCEEEEEECCC----CCEEEEEE-CCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecccccc
Confidence            8999999999998    78888876 69999999999999999999999999999 999999999999999999999775


Q ss_pred             C
Q psy14456         81 R   81 (93)
Q Consensus        81 ~   81 (93)
                      .
T Consensus       129 ~  129 (340)
T d1tbga_         129 R  129 (340)
T ss_dssp             S
T ss_pred             c
Confidence            4

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.69  E-value=5.7e-16  Score=86.52  Aligned_cols=83  Identities=19%  Similarity=0.218  Sum_probs=73.1

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      |++.|.+++|+|+    ++.++++|+.|+.|++||.++++....+..|...+.++ ++|+++++++++.|+.+.+||.++
T Consensus       145 h~~~v~~v~~~~~----~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~  220 (311)
T d1nr0a1         145 QARAMNSVDFKPS----RPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVD  220 (311)
T ss_dssp             CSSCEEEEEECSS----SSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             ccccccccccccc----ceeeecccccccccccccccccccccccccccccccccccCcccccccccccccccccccccc
Confidence            6788999999998    56545545579999999999999999999999999999 999999999999999999999998


Q ss_pred             CceeeEec
Q psy14456         81 RGCTNVLT   88 (93)
Q Consensus        81 ~~~~~~~~   88 (93)
                      +.....+.
T Consensus       221 ~~~~~~~~  228 (311)
T d1nr0a1         221 GTKTGVFE  228 (311)
T ss_dssp             CCEEEECB
T ss_pred             cccccccc
Confidence            87766654

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.69  E-value=9.6e-16  Score=84.92  Aligned_cols=86  Identities=19%  Similarity=0.363  Sum_probs=74.9

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEe--eccccceEEE-EecCCCEEEEecCCCcEEEEeC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQAL--SGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDL   78 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~--~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~   78 (93)
                      |++.|++++|+|+    +..+++++ .|+.+++|+.+....+..+  ..+...+..+ |++++.++++++.|+.|++||+
T Consensus       225 h~~~i~~v~~~p~----~~~l~s~s-~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~  299 (340)
T d1tbga_         225 HESDINAICFFPN----GNAFATGS-DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA  299 (340)
T ss_dssp             CSSCEEEEEECTT----SSEEEEEE-TTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEET
T ss_pred             CCCCeEEEEECCC----CCEEEEEe-CCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEEC
Confidence            7889999999998    77887776 6999999999988776655  3456678899 9999999999999999999999


Q ss_pred             CCCceeeEecCccC
Q psy14456         79 RTRGCTNVLTPITV   92 (93)
Q Consensus        79 ~~~~~~~~~~~~~~   92 (93)
                      .+++++..+.+|..
T Consensus       300 ~~~~~~~~~~~H~~  313 (340)
T d1tbga_         300 LKADRAGVLAGHDN  313 (340)
T ss_dssp             TTCCEEEEECCCSS
T ss_pred             CCCcEEEEEcCCCC
Confidence            99999999988754

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=4.7e-16  Score=85.07  Aligned_cols=84  Identities=29%  Similarity=0.466  Sum_probs=74.6

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      |+++|++++|+|+    ++++++++ .|+.|++||+++++.+..+.+|.+.|.++ +++++..++++..+..+..|+...
T Consensus        16 H~~~I~~l~~sp~----~~~l~s~s-~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (317)
T d1vyhc1          16 HRSPVTRVIFHPV----FSVMVSAS-EDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG   90 (317)
T ss_dssp             CSSCEEEEEECSS----SSEEEEEE-SSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS
T ss_pred             CCCCeEEEEEcCC----CCEEEEEe-CCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccccccccc
Confidence            8899999999998    78888876 69999999999999999999999999999 999999999999999999999887


Q ss_pred             CceeeEecCc
Q psy14456         81 RGCTNVLTPI   90 (93)
Q Consensus        81 ~~~~~~~~~~   90 (93)
                      ......+..+
T Consensus        91 ~~~~~~~~~~  100 (317)
T d1vyhc1          91 FECIRTMHGH  100 (317)
T ss_dssp             SCEEECCCCC
T ss_pred             cccccccccc
Confidence            7665555443

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.7e-15  Score=82.19  Aligned_cols=79  Identities=33%  Similarity=0.491  Sum_probs=66.5

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEEEecCCCEEEEecCCCcEEEEeCCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWGGATVLSGSHDRTVRFWDLRTR   81 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~   81 (93)
                      |...|+|++|  +    ++++++++ .|+.|++||+++++++..+.+|.+.|.++ .++++++++++.|+.+.+|+++.+
T Consensus        14 ~~~~V~c~~~--d----~~~l~sgs-~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v-~~~~~~l~s~s~D~~i~~~~~~~~   85 (293)
T d1p22a2          14 TSKGVYCLQY--D----DQKIVSGL-RDNTIKIWDKNTLECKRILTGHTGSVLCL-QYDERVIITGSSDSTVRVWDVNTG   85 (293)
T ss_dssp             SCCCEEEEEC--C----SSEEEEEE-SSSCEEEEESSSCCEEEEECCCSSCEEEE-ECCSSEEEEEETTSCEEEEESSSC
T ss_pred             CCCCEEEEEE--c----CCEEEEEe-CCCeEEEEECCCCcEEEEEecCCCCEeee-ecccceeecccccccccccccccc
Confidence            4567888765  5    67777766 69999999999999999999999999998 336789999999999999999988


Q ss_pred             ceeeEec
Q psy14456         82 GCTNVLT   88 (93)
Q Consensus        82 ~~~~~~~   88 (93)
                      .......
T Consensus        86 ~~~~~~~   92 (293)
T d1p22a2          86 EMLNTLI   92 (293)
T ss_dssp             CEEEEEC
T ss_pred             ccccccc
Confidence            7665554

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.68  E-value=9.5e-16  Score=86.66  Aligned_cols=86  Identities=28%  Similarity=0.379  Sum_probs=71.4

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCc------------eeEEeeccccceEEE-EecCCCEEEEec
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQ------------AFQALSGHSGHVLSL-YNWGGATVLSGS   68 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~------------~~~~~~~~~~~v~~~-~~~~~~~~~s~~   68 (93)
                      |.+.|.+++|+|+    +..+++++ .|+.+++||+..+.            .......|...+.++ |++++.++++++
T Consensus       253 h~~~v~~l~~s~~----~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~  327 (388)
T d1erja_         253 HKDSVYSVVFTRD----GQSVVSGS-LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS  327 (388)
T ss_dssp             CSSCEEEEEECTT----SSEEEEEE-TTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEE
T ss_pred             CCCCEEEEEECCC----CCEEEEEE-CCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEe
Confidence            6788999999998    77888776 69999999987542            334556788899999 999999999999


Q ss_pred             CCCcEEEEeCCCCceeeEecCccC
Q psy14456         69 HDRTVRFWDLRTRGCTNVLTPITV   92 (93)
Q Consensus        69 ~~~~i~~~d~~~~~~~~~~~~~~~   92 (93)
                      .|+.|++||+++++++..+.+|..
T Consensus       328 ~dg~i~vwd~~~~~~~~~l~~H~~  351 (388)
T d1erja_         328 KDRGVLFWDKKSGNPLLMLQGHRN  351 (388)
T ss_dssp             TTSEEEEEETTTCCEEEEEECCSS
T ss_pred             CCCEEEEEECCCCcEEEEEeCCCC
Confidence            999999999999999999887753

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.68  E-value=6.4e-16  Score=85.18  Aligned_cols=82  Identities=16%  Similarity=0.093  Sum_probs=66.4

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCce---eEEeeccccceEEE-EecC-CCEEEEecCCCcEEEE
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQA---FQALSGHSGHVLSL-YNWG-GATVLSGSHDRTVRFW   76 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~---~~~~~~~~~~v~~~-~~~~-~~~~~s~~~~~~i~~~   76 (93)
                      |++.|++++|+|+    +++|++++ .|+.|++||++.+..   +....+|.+.|.++ |+++ +..+++++.|+.+.+|
T Consensus        10 h~d~I~~l~fsp~----~~~L~s~s-~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w   84 (342)
T d1yfqa_          10 PKDYISDIKIIPS----KSLLLITS-WDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV   84 (342)
T ss_dssp             CSSCEEEEEEEGG----GTEEEEEE-TTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEE
T ss_pred             CCCCEEEEEEeCC----CCEEEEEE-CCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeee
Confidence            7889999999999    78888866 699999999876543   23334699999999 9885 5688999999999999


Q ss_pred             eCCCCceeeEec
Q psy14456         77 DLRTRGCTNVLT   88 (93)
Q Consensus        77 d~~~~~~~~~~~   88 (93)
                      ++..+.......
T Consensus        85 ~~~~~~~~~~~~   96 (342)
T d1yfqa_          85 DLIGSPSFQALT   96 (342)
T ss_dssp             CSSSSSSEEECB
T ss_pred             eccccccccccc
Confidence            998876555443

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.1e-15  Score=85.75  Aligned_cols=83  Identities=19%  Similarity=0.199  Sum_probs=65.7

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCce-----eEEeeccccceEEE-EecCCCEEEEecCCCcEEE
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQA-----FQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRF   75 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~-----~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~   75 (93)
                      |+..|++++|+|+    +++++++ + |+.|++||+..+..     .....+|.+.|.++ |+|+++++++++.|+.|++
T Consensus        50 H~~~V~~v~fs~~----g~~latg-~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~i  123 (337)
T d1gxra_          50 HGEVVCAVTISNP----TRHVYTG-G-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSI  123 (337)
T ss_dssp             CSSCCCEEEECSS----SSEEEEE-C-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEE
T ss_pred             CCCcEEEEEECCC----CCEEEEE-E-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccc
Confidence            7899999999998    7777775 4 89999999876532     22335788999999 9999999999999999999


Q ss_pred             EeCCCC--ceeeEecCc
Q psy14456         76 WDLRTR--GCTNVLTPI   90 (93)
Q Consensus        76 ~d~~~~--~~~~~~~~~   90 (93)
                      ||+...  .....+..+
T Consensus       124 wd~~~~~~~~~~~~~~~  140 (337)
T d1gxra_         124 WDLAAPTPRIKAELTSS  140 (337)
T ss_dssp             EECCCC--EEEEEEECS
T ss_pred             ccccccccccccccccc
Confidence            998754  344444433

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.66  E-value=4.6e-15  Score=82.27  Aligned_cols=79  Identities=39%  Similarity=0.664  Sum_probs=66.1

Q ss_pred             Cccce-eEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCC
Q psy14456          2 HDGTV-RDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLR   79 (93)
Q Consensus         2 h~~~v-~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~   79 (93)
                      |+..| +|++|  +    ++++++++ .|+.|++||+.+++++..+.+|.+.|.++ |+++ ..+++++.|+.+++|+..
T Consensus        11 H~~~vitc~~~--~----~~~l~tgs-~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~   82 (355)
T d1nexb2          11 HMTSVITCLQF--E----DNYVITGA-DDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIK   82 (355)
T ss_dssp             CSSSCEEEEEE--E----TTEEEEEE-TTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETT
T ss_pred             cCCCcEEEEEE--C----CCEEEEEe-CCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEeccccccccccc
Confidence            77765 66655  4    56777766 69999999999999999999999999999 9875 589999999999999999


Q ss_pred             CCceeeEec
Q psy14456         80 TRGCTNVLT   88 (93)
Q Consensus        80 ~~~~~~~~~   88 (93)
                      .........
T Consensus        83 ~~~~~~~~~   91 (355)
T d1nexb2          83 KGCCTHVFE   91 (355)
T ss_dssp             TTEEEEEEC
T ss_pred             ccccccccc
Confidence            887665543

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.62  E-value=4.3e-15  Score=81.69  Aligned_cols=74  Identities=16%  Similarity=0.192  Sum_probs=63.4

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEee-ccccceEEE-EecCCCEEEEecCCCcEEEEeCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALS-GHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLR   79 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~-~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~   79 (93)
                      |++.|++++|+|+    ++++++++ .|+.|++||+++++.+..+. .|...|.++ |++++.+ ++++.|+.+++|+..
T Consensus        11 H~~~V~~l~~s~d----g~~l~s~s-~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~-~~~~~d~~v~~~~~~   84 (299)
T d1nr0a2          11 HNKAITALSSSAD----GKTLFSAD-AEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL-FTVSWDDHLKVVPAG   84 (299)
T ss_dssp             CSSCEEEEEECTT----SSEEEEEE-TTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCE-EEEETTTEEEEECSS
T ss_pred             CCCCcEEEEECCC----CCEEEEEc-CCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeecccee-ecccceeeEEEeccC
Confidence            8899999999998    78888876 69999999999999888774 688999999 9998875 456679999999976


Q ss_pred             CC
Q psy14456         80 TR   81 (93)
Q Consensus        80 ~~   81 (93)
                      ..
T Consensus        85 ~~   86 (299)
T d1nr0a2          85 GS   86 (299)
T ss_dssp             SS
T ss_pred             Cc
Confidence            43

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.61  E-value=1.4e-14  Score=82.15  Aligned_cols=86  Identities=24%  Similarity=0.234  Sum_probs=72.3

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCC------------------ceeEEeeccccceEEE-EecCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATG------------------QAFQALSGHSGHVLSL-YNWGGA   62 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~------------------~~~~~~~~~~~~v~~~-~~~~~~   62 (93)
                      |.+.|.+++|+|+    +..+++++ .|+.+++|+....                  ..+.....|...+.++ |+|+++
T Consensus       140 ~~~~v~~v~~~p~----~~~l~s~s-~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  214 (371)
T d1k8kc_         140 IRSTVLSLDWHPN----SVLLAAGS-CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGS  214 (371)
T ss_dssp             CCSCEEEEEECTT----SSEEEEEE-TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSS
T ss_pred             ccccccccccccc----ccceeccc-cCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccc
Confidence            6788999999998    77777766 6999999997532                  2445566788899999 999999


Q ss_pred             EEEEecCCCcEEEEeCCCCceeeEecCccC
Q psy14456         63 TVLSGSHDRTVRFWDLRTRGCTNVLTPITV   92 (93)
Q Consensus        63 ~~~s~~~~~~i~~~d~~~~~~~~~~~~~~~   92 (93)
                      .+++++.|+.+.+||++++..+..+..+..
T Consensus       215 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  244 (371)
T d1k8kc_         215 RVAWVSHDSTVCLADADKKMAVATLASETL  244 (371)
T ss_dssp             EEEEEETTTEEEEEEGGGTTEEEEEECSSC
T ss_pred             cccccccCCcceEEeeecccceeeeecccc
Confidence            999999999999999999998888876654

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=2.8e-14  Score=78.68  Aligned_cols=79  Identities=33%  Similarity=0.561  Sum_probs=65.8

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      |++.|.+ +++++    ++++++++ .|+.|++||+.+++++..+.+|.+.|.++ |++  .++++++.|+.+++|+...
T Consensus        15 H~~~V~s-~~~~~----g~~l~sgs-~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~--~~l~s~s~D~~~~~~~~~~   86 (342)
T d2ovrb2          15 HDDHVIT-CLQFC----GNRIVSGS-DDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD--NIIISGSTDRTLKVWNAET   86 (342)
T ss_dssp             STTSCEE-EEEEE----TTEEEEEE-TTSCEEEEETTTCCEEEECCCCSSCEEEEEEET--TEEEEEETTSCEEEEETTT
T ss_pred             cCCceEE-EEEEC----CCEEEEEe-CCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCC--Cccccceeccccccccccc
Confidence            8888754 35666    67788776 69999999999999999999999999999 875  5899999999999999987


Q ss_pred             CceeeEec
Q psy14456         81 RGCTNVLT   88 (93)
Q Consensus        81 ~~~~~~~~   88 (93)
                      ........
T Consensus        87 ~~~~~~~~   94 (342)
T d2ovrb2          87 GECIHTLY   94 (342)
T ss_dssp             TEEEEEEC
T ss_pred             ccceeccc
Confidence            76554443

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.60  E-value=2.5e-14  Score=80.03  Aligned_cols=86  Identities=10%  Similarity=0.134  Sum_probs=70.6

Q ss_pred             CccceeEEEEEecCCCCcce-EEEeeeCCCeEEEEeCCCCceeEEe---eccccceEEE-EecC-CCEEEEecCCCcEEE
Q psy14456          2 HDGTVRDVCFIEDTSNKSSL-LISGGAGDCKIYVTDCATGQAFQAL---SGHSGHVLSL-YNWG-GATVLSGSHDRTVRF   75 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~-~~~~g~~~~~v~~~~~~~~~~~~~~---~~~~~~v~~~-~~~~-~~~~~s~~~~~~i~~   75 (93)
                      |...|.+++|+|+    +.. +++++ .|+.+++|+....+....+   ..|...+.++ |+|+ +.++++++.|+.|++
T Consensus       158 h~~~v~~~~~~~~----~~~~~~~~~-~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~i  232 (325)
T d1pgua1         158 HSQRINACHLKQS----RPMRSMTVG-DDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISC  232 (325)
T ss_dssp             CSSCEEEEEECSS----SSCEEEEEE-TTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEE
T ss_pred             ccccccccccccc----ccceEEEee-cccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceee
Confidence            7789999999998    554 45555 6999999999887765544   3566789999 9995 688999999999999


Q ss_pred             EeCCCCceeeEecCccC
Q psy14456         76 WDLRTRGCTNVLTPITV   92 (93)
Q Consensus        76 ~d~~~~~~~~~~~~~~~   92 (93)
                      ||+++++.+..+..|..
T Consensus       233 wd~~~~~~~~~l~~~~~  249 (325)
T d1pgua1         233 FDGKSGEFLKYIEDDQE  249 (325)
T ss_dssp             EETTTCCEEEECCBTTB
T ss_pred             eeecccccccccccccc
Confidence            99999999998876643

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=3.8e-14  Score=79.38  Aligned_cols=85  Identities=20%  Similarity=0.296  Sum_probs=72.8

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCC--ceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATG--QAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDL   78 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~--~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~   78 (93)
                      |++.|.+++|+|+    ++.+++++ .|+.|++||+...  .....+..|...+..+ |++++..+++++.|+.+.+||+
T Consensus        96 h~~~I~~v~~s~d----g~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~  170 (337)
T d1gxra_          96 RDNYIRSCKLLPD----GCTLIVGG-EASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDL  170 (337)
T ss_dssp             TTSBEEEEEECTT----SSEEEEEE-SSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             CCCcEEEEEEcCC----CCEEEEee-cccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            6788999999998    78888776 6999999998754  4456777888999999 9999999999999999999999


Q ss_pred             CCCceeeEecCcc
Q psy14456         79 RTRGCTNVLTPIT   91 (93)
Q Consensus        79 ~~~~~~~~~~~~~   91 (93)
                      +++........+.
T Consensus       171 ~~~~~~~~~~~~~  183 (337)
T d1gxra_         171 HNQTLVRQFQGHT  183 (337)
T ss_dssp             TTTEEEEEECCCS
T ss_pred             ccccccccccccc
Confidence            9988877776654

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.59  E-value=1.3e-14  Score=79.68  Aligned_cols=77  Identities=17%  Similarity=0.336  Sum_probs=66.4

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCcee---EEeeccccceEEE-EecCCCEEEEecCCCcEEEEe
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAF---QALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWD   77 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~---~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d   77 (93)
                      |++.|++++|+|+    +..+++++ .++.+++|+..++...   ..+.+|...+.++ |+|++.++++++.|+.+++||
T Consensus       178 ~~~~i~~~~~~~~----~~~l~~~~-~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd  252 (299)
T d1nr0a2         178 HPAEITSVAFSNN----GAFLVATD-QSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWN  252 (299)
T ss_dssp             CSSCEEEEEECTT----SSEEEEEE-TTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             ccccccccccccc----cccccccc-cccccccccccccccccccccccccccccccccccccccceEEEcCCCEEEEEE
Confidence            7789999999998    67777766 6999999999877554   3456788999999 999999999999999999999


Q ss_pred             CCCCce
Q psy14456         78 LRTRGC   83 (93)
Q Consensus        78 ~~~~~~   83 (93)
                      ++++..
T Consensus       253 ~~~~~~  258 (299)
T d1nr0a2         253 MNKPSD  258 (299)
T ss_dssp             TTCTTS
T ss_pred             CCCCCc
Confidence            987654

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.58  E-value=3.4e-14  Score=77.73  Aligned_cols=85  Identities=11%  Similarity=0.133  Sum_probs=68.9

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeE-EeeccccceEEE-EecC----------CCEEEEecC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQ-ALSGHSGHVLSL-YNWG----------GATVLSGSH   69 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~-~~~~~~~~v~~~-~~~~----------~~~~~s~~~   69 (93)
                      |.+.+++++|+|+    +.++++++ .++.+++||+..+.... .+.+|...+.++ |+|.          +.++++++.
T Consensus       161 ~~~~v~~~~~s~~----~~~l~~g~-~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~  235 (287)
T d1pgua2         161 LRAKPSYISISPS----ETYIAAGD-VMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSL  235 (287)
T ss_dssp             CSSCEEEEEECTT----SSEEEEEE-TTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEET
T ss_pred             cCCceeEEEeccC----cccccccc-ccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecC
Confidence            5678999999998    77777766 69999999999887654 457889999999 8764          468999999


Q ss_pred             CCcEEEEeCCCC-ceeeEecCcc
Q psy14456         70 DRTVRFWDLRTR-GCTNVLTPIT   91 (93)
Q Consensus        70 ~~~i~~~d~~~~-~~~~~~~~~~   91 (93)
                      |+.+++||++++ ..+..+.+|.
T Consensus       236 D~~i~iw~~~~~~~~~~~~~~h~  258 (287)
T d1pgua2         236 DTNIFIYSVKRPMKIIKALNAHK  258 (287)
T ss_dssp             TSCEEEEESSCTTCCEEETTSST
T ss_pred             CCeEEEEECCCCCeEEEEeCCCC
Confidence            999999999874 4555555664

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.58  E-value=2.1e-14  Score=81.91  Aligned_cols=80  Identities=11%  Similarity=0.192  Sum_probs=65.2

Q ss_pred             ccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEe------eccccceEEE-EecCCCEEEEecCCC---c
Q psy14456          3 DGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQAL------SGHSGHVLSL-YNWGGATVLSGSHDR---T   72 (93)
Q Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~------~~~~~~v~~~-~~~~~~~~~s~~~~~---~   72 (93)
                      ...+.+++|+|+    + .++++ +.|+.|++||+.+++.+..+      .+|...|.++ |+|++.+|++++.|+   .
T Consensus       184 ~~~~~~v~~s~d----g-~lasg-s~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~  257 (393)
T d1sq9a_         184 SQFATSVDISER----G-LIATG-FNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGC  257 (393)
T ss_dssp             CCCCCEEEECTT----S-EEEEE-CTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEE
T ss_pred             CCcEEEEEECCC----C-EEEEE-eCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcce
Confidence            345789999987    4 55554 47999999999988776543      4688999999 999999999999886   4


Q ss_pred             EEEEeCCCCceeeEec
Q psy14456         73 VRFWDLRTRGCTNVLT   88 (93)
Q Consensus        73 i~~~d~~~~~~~~~~~   88 (93)
                      +++||++++..+..+.
T Consensus       258 i~lwd~~~g~~~~~l~  273 (393)
T d1sq9a_         258 ITLYETEFGERIGSLS  273 (393)
T ss_dssp             EEEEETTTCCEEEEEC
T ss_pred             eeecccccceeeeeec
Confidence            8999999998887764

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.54  E-value=5.9e-14  Score=76.75  Aligned_cols=75  Identities=17%  Similarity=0.366  Sum_probs=60.2

Q ss_pred             CccceeEEEEEecCC------CCcceEEEeeeCCCeEEEEeCCC-CceeEEeeccccceEEE-EecCCCEEEEecCCCcE
Q psy14456          2 HDGTVRDVCFIEDTS------NKSSLLISGGAGDCKIYVTDCAT-GQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTV   73 (93)
Q Consensus         2 h~~~v~~~~~~~~~~------~~~~~~~~~g~~~~~v~~~~~~~-~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i   73 (93)
                      |+++|.+++|+|.+.      ....++++++ .|+.|++|+++. ...+..+.+|.+.|.++ |++++ .+++++.|+.+
T Consensus       204 h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs-~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v  281 (287)
T d1pgua2         204 RTSKINAISWKPAEKGANEEEIEEDLVATGS-LDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACI  281 (287)
T ss_dssp             CSSCEEEEEECCCC------CCSCCEEEEEE-TTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCE
T ss_pred             cccccceeeecccccccccccCCCCeeEeec-CCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeE
Confidence            788999999998641      1234566555 799999999876 45567778999999999 99875 58899999999


Q ss_pred             EEEeC
Q psy14456         74 RFWDL   78 (93)
Q Consensus        74 ~~~d~   78 (93)
                      ++|++
T Consensus       282 ~iW~i  286 (287)
T d1pgua2         282 KRWNV  286 (287)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99986

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.52  E-value=3.3e-13  Score=75.20  Aligned_cols=84  Identities=18%  Similarity=0.138  Sum_probs=71.1

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCC-CeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGD-CKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLR   79 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~-~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~   79 (93)
                      |+..|.+++|+|+    ++.++.++.++ ..+.+||.++++.. .+..|...+..+ |+|++..+++++.++.+.+|+..
T Consensus        41 ~~~~v~~~~~spD----g~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~  115 (360)
T d1k32a3          41 EPLRIRYVRRGGD----TKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLE  115 (360)
T ss_dssp             CCSCEEEEEECSS----SEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             CCCCEEEEEECCC----CCEEEEEEcCCCCEEEEEECCCCcEE-EeeCCCceEEeeeecccccccceecccccccccccc
Confidence            7889999999999    77777766544 37899999887654 567889999999 99999999999999999999999


Q ss_pred             CCceeeEecCc
Q psy14456         80 TRGCTNVLTPI   90 (93)
Q Consensus        80 ~~~~~~~~~~~   90 (93)
                      ++.....+..+
T Consensus       116 ~~~~~~~~~~~  126 (360)
T d1k32a3         116 TGKPTVIERSR  126 (360)
T ss_dssp             TCCEEEEEECS
T ss_pred             ccceeeeeecc
Confidence            98887776554

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.6e-12  Score=71.54  Aligned_cols=79  Identities=30%  Similarity=0.509  Sum_probs=61.2

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeecc---ccceEEEEecCCCEEEEecCCCcEEEEeC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGH---SGHVLSLYNWGGATVLSGSHDRTVRFWDL   78 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~s~~~~~~i~~~d~   78 (93)
                      |...+.+++++      ++++++++ .|+.+++|+....+....+..+   ...+.++ ..++..+++++.|+.|++||+
T Consensus       216 ~~~~v~~~~~~------~~~l~s~s-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~s~Dg~i~iwd~  287 (342)
T d2ovrb2         216 HQSLTSGMELK------DNILVSGN-ADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCL-QFNKNFVITSSDDGTVKLWDL  287 (342)
T ss_dssp             CCSCEEEEEEE------TTEEEEEE-TTSCEEEEETTTCCEEEEECSTTSCSSCEEEE-EECSSEEEEEETTSEEEEEET
T ss_pred             cccceeEEecC------CCEEEEEc-CCCEEEEEecccccccccccccceeeeceeec-ccCCCeeEEEcCCCEEEEEEC
Confidence            56677777765      35677766 6999999999988877766543   4455554 446789999999999999999


Q ss_pred             CCCceeeEec
Q psy14456         79 RTRGCTNVLT   88 (93)
Q Consensus        79 ~~~~~~~~~~   88 (93)
                      ++++.++.+.
T Consensus       288 ~tg~~i~~~~  297 (342)
T d2ovrb2         288 KTGEFIRNLV  297 (342)
T ss_dssp             TTCCEEEEEE
T ss_pred             CCCCEEEEEe
Confidence            9999888764

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.33  E-value=4.6e-11  Score=65.88  Aligned_cols=78  Identities=22%  Similarity=0.297  Sum_probs=65.8

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      +...+.++.|+|.    +..+++++ .|+.+++|+.+++..+..+.+|...+.++ ++  +..+++++.|+.|++||+++
T Consensus       200 ~~~~~~~~~~~~~----~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~  272 (355)
T d1nexb2         200 HTDRIYSTIYDHE----RKRCISAS-MDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDAND  272 (355)
T ss_dssp             CSSCEEEEEEETT----TTEEEEEE-TTSCEEEEETTTCCEEEEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTT
T ss_pred             ccccccccccccc----ceeeeccc-ccceEEeeeccccccccccccccccccccccc--cceeeeeecccccccccccc
Confidence            3456778889988    67777766 69999999999999999999999999998 64  67899999999999999998


Q ss_pred             CceeeE
Q psy14456         81 RGCTNV   86 (93)
Q Consensus        81 ~~~~~~   86 (93)
                      +.....
T Consensus       273 ~~~~~~  278 (355)
T d1nexb2         273 YSRKFS  278 (355)
T ss_dssp             CCEEEE
T ss_pred             cceecc
Confidence            765443

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.24  E-value=1e-10  Score=67.33  Aligned_cols=65  Identities=15%  Similarity=0.108  Sum_probs=54.7

Q ss_pred             cceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCCCcee
Q psy14456         19 SSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRGCT   84 (93)
Q Consensus        19 ~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~~~   84 (93)
                      ..+++.+.+.++.|++||+.+++.+..+..+. .+..+ |+|+|+.+++++.|+.+.+||+.+++..
T Consensus        31 ~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~   96 (426)
T d1hzua2          31 PNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPT   96 (426)
T ss_dssp             GGEEEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCE
T ss_pred             CeEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCcee
Confidence            34554555579999999999999999998764 47888 9999999999999999999999988643

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.22  E-value=3.9e-11  Score=69.54  Aligned_cols=81  Identities=14%  Similarity=0.038  Sum_probs=63.2

Q ss_pred             cceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCce--eEEe---eccccceEEE-EecCCCEE-EEecCCCcEEEE
Q psy14456          4 GTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQA--FQAL---SGHSGHVLSL-YNWGGATV-LSGSHDRTVRFW   76 (93)
Q Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~--~~~~---~~~~~~v~~~-~~~~~~~~-~s~~~~~~i~~~   76 (93)
                      ..+..++|+|+    ++++++++ +|+.+++||+.+++.  ...+   .+|.+.+... |+|+++.+ +++..++.+.+|
T Consensus        62 ~~~~~v~fSpD----G~~l~~~s-~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~  136 (432)
T d1qksa2          62 YAVHISRLSAS----GRYLFVIG-RDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIM  136 (432)
T ss_dssp             SCEEEEEECTT----SCEEEEEE-TTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEE
T ss_pred             CCeeEEEECCC----CCEEEEEc-CCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEE
Confidence            35889999999    78888776 799999999988753  2333   3455556666 78899875 678889999999


Q ss_pred             eCCCCceeeEecC
Q psy14456         77 DLRTRGCTNVLTP   89 (93)
Q Consensus        77 d~~~~~~~~~~~~   89 (93)
                      |..+++.++.+..
T Consensus       137 d~~t~~~~~~~~~  149 (432)
T d1qksa2         137 DGETLEPKKIQST  149 (432)
T ss_dssp             ETTTCCEEEEEEC
T ss_pred             eCccccceeeecc
Confidence            9999988877654

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.21  E-value=6e-11  Score=68.28  Aligned_cols=81  Identities=11%  Similarity=0.034  Sum_probs=62.7

Q ss_pred             cceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeE--Ee---eccccceEEE-EecCCCEEE-EecCCCcEEEE
Q psy14456          4 GTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQ--AL---SGHSGHVLSL-YNWGGATVL-SGSHDRTVRFW   76 (93)
Q Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~--~~---~~~~~~v~~~-~~~~~~~~~-s~~~~~~i~~~   76 (93)
                      ..+..++|+|+    ++++++++ +|+.+++||+.+++...  .+   .+|.+.+.+. |+|+++.++ ++..++.+.+|
T Consensus        62 ~~~~~vafSPD----Gk~l~~~~-~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~  136 (426)
T d1hzua2          62 YAVHISRMSAS----GRYLLVIG-RDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIM  136 (426)
T ss_dssp             SSEEEEEECTT----SCEEEEEE-TTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEE
T ss_pred             CCeeEEEECCC----CCEEEEEe-CCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEE
Confidence            45889999999    78888776 69999999999887533  22   2455666667 888998765 55588999999


Q ss_pred             eCCCCceeeEecC
Q psy14456         77 DLRTRGCTNVLTP   89 (93)
Q Consensus        77 d~~~~~~~~~~~~   89 (93)
                      |..++.+.+.+..
T Consensus       137 d~~~~~~~~~~~~  149 (426)
T d1hzua2         137 DGETLEPKQIVST  149 (426)
T ss_dssp             ETTTCCEEEEEEC
T ss_pred             cCCccceeEEeec
Confidence            9999887776654

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.21  E-value=5.9e-11  Score=64.97  Aligned_cols=77  Identities=21%  Similarity=0.321  Sum_probs=58.6

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccce-EEE-EecCCCEEEEecCCCcEEEEeCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHV-LSL-YNWGGATVLSGSHDRTVRFWDLR   79 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v-~~~-~~~~~~~~~s~~~~~~i~~~d~~   79 (93)
                      |+++|.+++|+|++   +..+++++ .|+.+++|+............+.... ... +.++...+++++.++.+.+||++
T Consensus        55 h~~~V~~v~f~~~~---~~~l~sg~-~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~  130 (342)
T d1yfqa_          55 YKHPLLCCNFIDNT---DLQIYVGT-VQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPR  130 (342)
T ss_dssp             CSSCEEEEEEEESS---SEEEEEEE-TTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHH
T ss_pred             CCCCEEEEEEeCCC---CCEEEEcc-cccceeeeecccccccccccccccccccccccccccccccccccccccceeecc
Confidence            78899999999973   34555554 79999999998887766665444433 334 66688899999999999999987


Q ss_pred             CCc
Q psy14456         80 TRG   82 (93)
Q Consensus        80 ~~~   82 (93)
                      ++.
T Consensus       131 ~~~  133 (342)
T d1yfqa_         131 NYG  133 (342)
T ss_dssp             HHT
T ss_pred             ccc
Confidence            543

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.20  E-value=1.4e-10  Score=64.05  Aligned_cols=75  Identities=13%  Similarity=0.000  Sum_probs=59.7

Q ss_pred             EEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEee-ccccceEEE-EecCCCEE-EEecCCCcEEEEeCCCCceee
Q psy14456          9 VCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALS-GHSGHVLSL-YNWGGATV-LSGSHDRTVRFWDLRTRGCTN   85 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~-~~~~~v~~~-~~~~~~~~-~s~~~~~~i~~~d~~~~~~~~   85 (93)
                      ++|+++    ++++++++ +++.|.+||+.+++.+..+. .+......+ |+|+++.+ +++..++.+.+||+.+++...
T Consensus         2 ~a~~~~----~~~l~~~~-~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~   76 (346)
T d1jmxb_           2 PALKAG----HEYMIVTN-YPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTF   76 (346)
T ss_dssp             CCCCTT----CEEEEEEE-TTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             ccCCCC----CcEEEEEc-CCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeee
Confidence            345665    67777766 69999999999999988876 445566788 99999876 566688999999999998776


Q ss_pred             Eec
Q psy14456         86 VLT   88 (93)
Q Consensus        86 ~~~   88 (93)
                      .+.
T Consensus        77 ~~~   79 (346)
T d1jmxb_          77 HAN   79 (346)
T ss_dssp             EEE
T ss_pred             eec
Confidence            654

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=1.6e-09  Score=58.15  Aligned_cols=82  Identities=32%  Similarity=0.530  Sum_probs=64.2

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEEEecCCCEEEEecCCCcEEEEeCCCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWGGATVLSGSHDRTVRFWDLRTR   81 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~   81 (93)
                      |...+.++.+.+      ..+++.+ .|+.+++|+.++++.+..+.++...+..+ .+++..+++++.|+.+++||+++.
T Consensus       137 ~~~~v~~~~~~~------~~~~~~s-~d~~i~~~d~~~~~~~~~~~~~~~~v~~~-~~~~~~l~~~~~dg~i~i~d~~~~  208 (293)
T d1p22a2         137 HRAAVNVVDFDD------KYIVSAS-GDRTIKVWNTSTCEFVRTLNGHKRGIACL-QYRDRLVVSGSSDNTIRLWDIECG  208 (293)
T ss_dssp             CSSCEEEEEEET------TEEEEEE-TTSEEEEEETTTCCEEEEEECCSSCEEEE-EEETTEEEEEETTSCEEEEETTTC
T ss_pred             cccccccceecc------ccccccc-CCCceeeecCCCCcEEEEEcccccccccc-cCCCCeEEEecCCCEEEEEecccc
Confidence            455666666543      3455555 59999999999999999998888887776 334678999999999999999999


Q ss_pred             ceeeEecCcc
Q psy14456         82 GCTNVLTPIT   91 (93)
Q Consensus        82 ~~~~~~~~~~   91 (93)
                      ..+..+..+.
T Consensus       209 ~~~~~~~~~~  218 (293)
T d1p22a2         209 ACLRVLEGHE  218 (293)
T ss_dssp             CEEEEECCCS
T ss_pred             eeeeeecccc
Confidence            8888776653

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.14  E-value=5.9e-10  Score=61.47  Aligned_cols=80  Identities=9%  Similarity=-0.016  Sum_probs=62.9

Q ss_pred             ccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCCC
Q psy14456          3 DGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTR   81 (93)
Q Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~   81 (93)
                      ...+..+.++++    ...++...  ++.+.+||..+++.+..+. +...+.++ |++++..+++++.|+.|.+||.+++
T Consensus       251 ~~~~~~~~~~~~----~~~~~~~~--~~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~  323 (346)
T d1jmxb_         251 TELYFTGLRSPK----DPNQIYGV--LNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL  323 (346)
T ss_dssp             SSCEEEEEECSS----CTTEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTT
T ss_pred             cceeEEEEEeCC----CCEEEEec--CCeEEEEECCCCcEEEEEc-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccC
Confidence            345566677766    44555443  5789999999998887765 34567889 9999999999999999999999999


Q ss_pred             ceeeEecC
Q psy14456         82 GCTNVLTP   89 (93)
Q Consensus        82 ~~~~~~~~   89 (93)
                      +.+..+..
T Consensus       324 ~~i~~i~~  331 (346)
T d1jmxb_         324 EKVKNIKL  331 (346)
T ss_dssp             EEEEEEEC
T ss_pred             CEEEEEEC
Confidence            99888763

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.13  E-value=3.7e-10  Score=62.68  Aligned_cols=80  Identities=11%  Similarity=0.135  Sum_probs=66.5

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEe----------cCC
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSG----------SHD   70 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~----------~~~   70 (93)
                      |.+.|.+++|+|+    ++.+++++ .++.+.+|+...+.....+..+...+.++ |+|+++.++..          ..+
T Consensus        84 ~~~~v~~~~~spd----g~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~  158 (360)
T d1k32a3          84 NLGNVFAMGVDRN----GKFAVVAN-DRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVM  158 (360)
T ss_dssp             CCCSEEEEEECTT----SSEEEEEE-TTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCE
T ss_pred             CCceEEeeeeccc----ccccceec-cccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccc
Confidence            6778999999999    78888877 59999999999999888888888888888 99999998743          334


Q ss_pred             CcEEEEeCCCCceeeE
Q psy14456         71 RTVRFWDLRTRGCTNV   86 (93)
Q Consensus        71 ~~i~~~d~~~~~~~~~   86 (93)
                      +.+.+||..+++....
T Consensus       159 ~~~~v~d~~~~~~~~~  174 (360)
T d1k32a3         159 QAIHVYDMEGRKIFAA  174 (360)
T ss_dssp             EEEEEEETTTTEEEEC
T ss_pred             cceeeeccccCceeee
Confidence            5689999998765443

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.10  E-value=1.5e-09  Score=59.62  Aligned_cols=76  Identities=11%  Similarity=0.016  Sum_probs=59.3

Q ss_pred             ceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCCCce
Q psy14456          5 TVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRGC   83 (93)
Q Consensus         5 ~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~~   83 (93)
                      .+..+.++|+    +..++. +  ++.+++||+.+++.+..+. +...+.++ |++++..+++++.++.|.+||.++++.
T Consensus       242 ~~~~~~~~~~----~~~~~~-~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~  313 (337)
T d1pbyb_         242 FYFSTAVNPA----KTRAFG-A--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEK  313 (337)
T ss_dssp             CEEEEEECTT----SSEEEE-E--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCE
T ss_pred             ceEEEEeccc----ceEEEE-c--cccEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcE
Confidence            3444555554    344332 2  6899999999999888775 45667889 999999999999999999999999988


Q ss_pred             eeEec
Q psy14456         84 TNVLT   88 (93)
Q Consensus        84 ~~~~~   88 (93)
                      +..+.
T Consensus       314 v~~i~  318 (337)
T d1pbyb_         314 KGQVD  318 (337)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            87764

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.08  E-value=5.4e-09  Score=56.66  Aligned_cols=80  Identities=13%  Similarity=0.035  Sum_probs=60.9

Q ss_pred             cceeEEEEEecCCCCcceEEEee--eCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEE-EEecCCCcEEEEeCC
Q psy14456          4 GTVRDVCFIEDTSNKSSLLISGG--AGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATV-LSGSHDRTVRFWDLR   79 (93)
Q Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~g--~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~-~s~~~~~~i~~~d~~   79 (93)
                      .....+.|+++    +..++.++  ..++.+.+||..+++.+..+..+ ..+..+ |+|+++.+ +++..++.|.+||++
T Consensus       200 ~~~~~~~~~~~----g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~-~~~~~va~spdg~~l~va~~~~~~i~v~D~~  274 (301)
T d1l0qa2         200 AAPSGIAVNPE----GTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG-PDPAGIAVTPDGKKVYVALSFCNTVSVIDTA  274 (301)
T ss_dssp             SEEEEEEECTT----SSEEEEEEECSSCCEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             CCcceeecccc----ccccccccccceeeeeeeeecCCCeEEEEEcCC-CCEEEEEEeCCCCEEEEEECCCCeEEEEECC
Confidence            34567788887    45444332  33578999999999888777643 456788 99999876 678889999999999


Q ss_pred             CCceeeEec
Q psy14456         80 TRGCTNVLT   88 (93)
Q Consensus        80 ~~~~~~~~~   88 (93)
                      +++.+..+.
T Consensus       275 t~~~~~~~~  283 (301)
T d1l0qa2         275 TNTITATMA  283 (301)
T ss_dssp             TTEEEEEEE
T ss_pred             CCeEEEEEe
Confidence            999888775

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.05  E-value=2.2e-09  Score=58.93  Aligned_cols=69  Identities=12%  Similarity=0.040  Sum_probs=55.3

Q ss_pred             ceEEEeeeCCCeEEEEeCCCCceeEEeecc--ccceEEE-EecCCCEE-EEecCCCcEEEEeCCCCceeeEecC
Q psy14456         20 SLLISGGAGDCKIYVTDCATGQAFQALSGH--SGHVLSL-YNWGGATV-LSGSHDRTVRFWDLRTRGCTNVLTP   89 (93)
Q Consensus        20 ~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~--~~~v~~~-~~~~~~~~-~s~~~~~~i~~~d~~~~~~~~~~~~   89 (93)
                      +++++++ +|+.|.+||+.+++.+..+..+  ...+..+ |+|+++.+ ++++.++.|.+||+.+++.+..+..
T Consensus         2 ~~~vt~~-~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~   74 (337)
T d1pbyb_           2 DYILAPA-RPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDL   74 (337)
T ss_dssp             EEEEEEE-TTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEEC
T ss_pred             eEEEEEc-CCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEec
Confidence            3566665 6999999999999998887643  3455678 99999876 5677899999999999988777654

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.05  E-value=2.4e-09  Score=61.95  Aligned_cols=62  Identities=18%  Similarity=0.078  Sum_probs=52.9

Q ss_pred             ceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCCCc
Q psy14456         20 SLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRG   82 (93)
Q Consensus        20 ~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~   82 (93)
                      ++++.+.+.++.|.+||.++++++..+..+. .+..+ |+|+++++++++.|+.+.+||+.++.
T Consensus        32 ~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~   94 (432)
T d1qksa2          32 NLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKE   94 (432)
T ss_dssp             GEEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSS
T ss_pred             cEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCC
Confidence            4544445579999999999999999998664 57888 99999999999999999999998765

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.00  E-value=1.4e-08  Score=55.02  Aligned_cols=82  Identities=12%  Similarity=0.129  Sum_probs=64.3

Q ss_pred             cceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEE-EEecCCCcEEEEeCCCC
Q psy14456          4 GTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATV-LSGSHDRTVRFWDLRTR   81 (93)
Q Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~-~s~~~~~~i~~~d~~~~   81 (93)
                      .....++|+|+    +++++.++..++.|.+||+.+++.+..+..+.. ...+ +++++..+ +++..+..+.+|+..++
T Consensus        32 ~~p~~va~spd----G~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (301)
T d1l0qa2          32 SNPMGAVISPD----GTKVYVANAHSNDVSIIDTATNNVIATVPAGSS-PQGVAVSPDGKQVYVTNMASSTLSVIDTTSN  106 (301)
T ss_dssp             SSEEEEEECTT----SSEEEEEEGGGTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             CCceEEEEeCC----CCEEEEEECCCCEEEEEECCCCceeeeeecccc-ccccccccccccccccccccceeeecccccc
Confidence            34678999999    777765555699999999999999888876654 4667 88887755 46667889999999998


Q ss_pred             ceeeEecCc
Q psy14456         82 GCTNVLTPI   90 (93)
Q Consensus        82 ~~~~~~~~~   90 (93)
                      +....+...
T Consensus       107 ~~~~~~~~~  115 (301)
T d1l0qa2         107 TVAGTVKTG  115 (301)
T ss_dssp             EEEEEEECS
T ss_pred             eeeeecccc
Confidence            877776543

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.81  E-value=9.1e-08  Score=52.99  Aligned_cols=59  Identities=14%  Similarity=0.108  Sum_probs=48.4

Q ss_pred             CeEEEEeCCCCceeEEeeccccceEEE-EecCCC--EEEEecCCCcEEEEeCCCCceeeEecC
Q psy14456         30 CKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGA--TVLSGSHDRTVRFWDLRTRGCTNVLTP   89 (93)
Q Consensus        30 ~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~--~~~s~~~~~~i~~~d~~~~~~~~~~~~   89 (93)
                      ..+.+||..+++.+..+.. ...+.++ |+|+++  +++++..|+.|.+||.++++.++.+..
T Consensus       280 ~~v~v~d~~t~~~~~~~~~-~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~  341 (355)
T d2bbkh_         280 RFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQ  341 (355)
T ss_dssp             EEEEEEETTTCCEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECC
T ss_pred             CeEEEEeCCCCcEEEEecC-CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeC
Confidence            4689999999988877753 3456788 999986  456778899999999999999998864

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=98.80  E-value=4.5e-08  Score=53.70  Aligned_cols=78  Identities=18%  Similarity=0.195  Sum_probs=56.5

Q ss_pred             CccceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEe---eccccceEEE-EecCCCEEEEec-CCCcEEEE
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQAL---SGHSGHVLSL-YNWGGATVLSGS-HDRTVRFW   76 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~---~~~~~~v~~~-~~~~~~~~~s~~-~~~~i~~~   76 (93)
                      |.+.+..++|+|+    ++.+++++..++.|.+|++........+   ......+..+ |+|+++.+++++ .+..+.+|
T Consensus        35 ~~~~v~~la~spD----G~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~  110 (333)
T d1ri6a_          35 VPGQVQPMVVSPD----KRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVT  110 (333)
T ss_dssp             CSSCCCCEEECTT----SSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             CCCCEeEEEEeCC----CCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeee
Confidence            4567899999999    7877666656899999998765433222   2233455678 999999888776 56788888


Q ss_pred             eCCCCce
Q psy14456         77 DLRTRGC   83 (93)
Q Consensus        77 d~~~~~~   83 (93)
                      +......
T Consensus       111 ~~~~~~~  117 (333)
T d1ri6a_         111 RLEDGLP  117 (333)
T ss_dssp             EEETTEE
T ss_pred             ccccccc
Confidence            7765543

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.79  E-value=1.6e-07  Score=52.44  Aligned_cols=62  Identities=10%  Similarity=0.080  Sum_probs=51.9

Q ss_pred             CCCeEEEEeCCCCceeEEeeccccceEEE-EecCCC--EEEEecCCCcEEEEeCCCCceeeEecCc
Q psy14456         28 GDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGA--TVLSGSHDRTVRFWDLRTRGCTNVLTPI   90 (93)
Q Consensus        28 ~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~--~~~s~~~~~~i~~~d~~~~~~~~~~~~~   90 (93)
                      .++.+.+||..+++.+..+. +...+..+ |+++++  ++++++.|+.+.+||+.+++.++.+..+
T Consensus       296 ~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~  360 (373)
T d2madh_         296 AAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVEL  360 (373)
T ss_pred             CCCeEEEEECCCCcEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCC
Confidence            47889999999999888764 55667788 999987  4468889999999999999999998753

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.78  E-value=7.2e-08  Score=53.87  Aligned_cols=82  Identities=16%  Similarity=0.055  Sum_probs=62.1

Q ss_pred             CccceeEEEEEecCCCCcceEEEee----eCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEec--------
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGG----AGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGS--------   68 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g----~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~--------   68 (93)
                      +.+++..++++|+    ++.++.+.    +..+.+.+||..+++.+..+..+...  .+ |+|+++.++.+.        
T Consensus        19 ~~~p~~~~a~spd----g~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~   92 (373)
T d2madh_          19 ADGPTNDEAPGAD----GRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAK   92 (373)
T ss_pred             CCCCccccccCCC----CCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccc
Confidence            5678889999999    56655432    12467999999999998888655443  56 999999988764        


Q ss_pred             --CCCcEEEEeCCCCceeeEecC
Q psy14456         69 --HDRTVRFWDLRTRGCTNVLTP   89 (93)
Q Consensus        69 --~~~~i~~~d~~~~~~~~~~~~   89 (93)
                        .++.+.+||..+++....+..
T Consensus        93 ~~~~~~v~v~D~~t~~~~~~~~~  115 (373)
T d2madh_          93 GKRTDYVEVFDPVTFLPIADIEL  115 (373)
T ss_pred             cccceEEEEEECCCCcEEEEEec
Confidence              357799999999988776643

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=98.69  E-value=5.8e-08  Score=53.26  Aligned_cols=63  Identities=10%  Similarity=0.020  Sum_probs=46.0

Q ss_pred             ceEEEeeeCCCeEEEEeCCCCceeEEe--eccccceEEE-EecCCCEEE-EecCCCcEEEEeCCCCc
Q psy14456         20 SLLISGGAGDCKIYVTDCATGQAFQAL--SGHSGHVLSL-YNWGGATVL-SGSHDRTVRFWDLRTRG   82 (93)
Q Consensus        20 ~~~~~~g~~~~~v~~~~~~~~~~~~~~--~~~~~~v~~~-~~~~~~~~~-s~~~~~~i~~~d~~~~~   82 (93)
                      +.++.++..++.|++|+++....+..+  ..+.+.+..+ |+|++++|+ ++..|+.+.+|++....
T Consensus         4 ~~v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~   70 (333)
T d1ri6a_           4 QTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDD   70 (333)
T ss_dssp             EEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred             eEEEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCC
Confidence            344444557999999998765443322  3577888899 999999885 55568999999988654

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.50  E-value=1.7e-06  Score=48.45  Aligned_cols=62  Identities=11%  Similarity=0.108  Sum_probs=49.1

Q ss_pred             eEEEEeCCCCceeEEeeccccceEEE-EecCCC--EEEEecCCCcEEEEeCCCCceeeEecCccCC
Q psy14456         31 KIYVTDCATGQAFQALSGHSGHVLSL-YNWGGA--TVLSGSHDRTVRFWDLRTRGCTNVLTPITVP   93 (93)
Q Consensus        31 ~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~--~~~s~~~~~~i~~~d~~~~~~~~~~~~~~~~   93 (93)
                      .+.+||..+++.+..+. ....+..+ |+++++  ++++...++.+.+||..+++.++.+.....|
T Consensus       295 ~v~v~D~~t~~~~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~~P  359 (368)
T d1mdah_         295 NTSSVTASVGQTSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGP  359 (368)
T ss_dssp             EEEEEESSSCCEEECCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCC
T ss_pred             eEEEEECCCCcEeEEec-CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEECCCCC
Confidence            58899999998887765 33566778 999986  3467778999999999999999988755443

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.42  E-value=5.5e-07  Score=52.03  Aligned_cols=79  Identities=6%  Similarity=-0.035  Sum_probs=60.6

Q ss_pred             CccceeEEEEEecCCCCcceEEEee--------eCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCc
Q psy14456          2 HDGTVRDVCFIEDTSNKSSLLISGG--------AGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRT   72 (93)
Q Consensus         2 h~~~v~~~~~~~~~~~~~~~~~~~g--------~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~   72 (93)
                      |...|.+..|+|+    +++++...        +.++.+.+||+.+++. ..+..+...+... |+|+|+.++.. .+..
T Consensus        60 ~~~~i~~~~~SpD----g~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~  133 (470)
T d2bgra1          60 FGHSINDYSISPD----GQFILLEYNYVKQWRHSYTASYDIYDLNKRQL-ITEERIPNNTQWVTWSPVGHKLAYV-WNND  133 (470)
T ss_dssp             SSSCCCEEEECTT----SSEEEEEEEEEECSSSCEEEEEEEEETTTTEE-CCSSCCCTTEEEEEECSSTTCEEEE-ETTE
T ss_pred             ccCccceeEECCC----CCEEEEEECCcceeeeccCceEEEEECCCCcc-cccccCCccccccccccCcceeeEe-eccc
Confidence            3467899999999    67766543        1246788999998874 4567778888888 99999999875 4678


Q ss_pred             EEEEeCCCCceeeE
Q psy14456         73 VRFWDLRTRGCTNV   86 (93)
Q Consensus        73 i~~~d~~~~~~~~~   86 (93)
                      +.+|+...+...+.
T Consensus       134 l~~~~~~~g~~~~~  147 (470)
T d2bgra1         134 IYVKIEPNLPSYRI  147 (470)
T ss_dssp             EEEESSTTSCCEEC
T ss_pred             ceEEECCCCceeee
Confidence            99999988876544

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.41  E-value=6.3e-07  Score=49.54  Aligned_cols=76  Identities=14%  Similarity=0.047  Sum_probs=54.3

Q ss_pred             eEEEEEecCCCCcceEEEee----eCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEe----------cCCC
Q psy14456          7 RDVCFIEDTSNKSSLLISGG----AGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSG----------SHDR   71 (93)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~g----~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~----------~~~~   71 (93)
                      .-.+.+|+    +..++...    .....+.+||..+++.+..+..+...  .+ |+|+++.++..          ..++
T Consensus         5 ~~~a~spd----g~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~   78 (355)
T d2bbkh_           5 ILEAPAPD----ARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTD   78 (355)
T ss_dssp             BCCCCCCC----TTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEE
T ss_pred             EeEeeCCC----CCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCC
Confidence            33445777    56555432    23557999999999988887655444  57 99999877653          3467


Q ss_pred             cEEEEeCCCCceeeEec
Q psy14456         72 TVRFWDLRTRGCTNVLT   88 (93)
Q Consensus        72 ~i~~~d~~~~~~~~~~~   88 (93)
                      .|.+||..+++....+.
T Consensus        79 ~v~v~D~~t~~~~~~~~   95 (355)
T d2bbkh_          79 YVEVFDPVTLLPTADIE   95 (355)
T ss_dssp             EEEEECTTTCCEEEEEE
T ss_pred             EEEEEECCCCCEEEEEe
Confidence            89999999998777664

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.35  E-value=1.6e-06  Score=48.62  Aligned_cols=79  Identities=9%  Similarity=-0.138  Sum_probs=57.2

Q ss_pred             eEEEEEecCCCCcceEEEee---------eCCCeEEEEeCCCCceeEEeecccc-------ceEEE-EecCCCEEEEec-
Q psy14456          7 RDVCFIEDTSNKSSLLISGG---------AGDCKIYVTDCATGQAFQALSGHSG-------HVLSL-YNWGGATVLSGS-   68 (93)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~g---------~~~~~v~~~~~~~~~~~~~~~~~~~-------~v~~~-~~~~~~~~~s~~-   68 (93)
                      ..+.|+|+    ++.++.+.         .+++.|.+||..+++....+..+..       ....+ |++++++++.+. 
T Consensus        68 ~~~a~spD----g~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~  143 (368)
T d1mdah_          68 SLAVAGHS----GSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLF  143 (368)
T ss_dssp             CEEEECTT----SSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEEC
T ss_pred             CcceECCC----CCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeC
Confidence            35788998    56655432         3578899999999988776643321       12346 899998887665 


Q ss_pred             CCCcEEEEeCCCCceeeEecC
Q psy14456         69 HDRTVRFWDLRTRGCTNVLTP   89 (93)
Q Consensus        69 ~~~~i~~~d~~~~~~~~~~~~   89 (93)
                      .++.+.+||+.+++....+..
T Consensus       144 ~~~~v~~~d~~~~~~~~~~~~  164 (368)
T d1mdah_         144 GSSAAAGLSVPGASDDQLTKS  164 (368)
T ss_dssp             SSSCEEEEEETTTEEEEEEEC
T ss_pred             CCCeEEEEECCCCcEeEEeec
Confidence            579999999999987776643

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.77  E-value=8.7e-05  Score=42.67  Aligned_cols=70  Identities=17%  Similarity=0.197  Sum_probs=51.7

Q ss_pred             eEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEee-----ccccceEEE-EecCCCEEEEec---------CCC
Q psy14456          7 RDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALS-----GHSGHVLSL-YNWGGATVLSGS---------HDR   71 (93)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~-----~~~~~v~~~-~~~~~~~~~s~~---------~~~   71 (93)
                      ..+.|.++    ++++..   .++.+.+||+.+++....+.     .+...+.++ |+||++.++..+         .++
T Consensus        20 ~~~~W~~d----~~~~~~---~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~   92 (470)
T d2bgra1          20 YSLRWISD----HEYLYK---QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTA   92 (470)
T ss_dssp             CCCEECSS----SEEEEE---SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred             cCCEeCCC----CEEEEE---cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCc
Confidence            35678887    565543   37889999999998765443     344678889 999999888764         246


Q ss_pred             cEEEEeCCCCce
Q psy14456         72 TVRFWDLRTRGC   83 (93)
Q Consensus        72 ~i~~~d~~~~~~   83 (93)
                      .+.+||+.+++.
T Consensus        93 ~~~l~d~~~~~~  104 (470)
T d2bgra1          93 SYDIYDLNKRQL  104 (470)
T ss_dssp             EEEEEETTTTEE
T ss_pred             eEEEEECCCCcc
Confidence            788999998764

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=97.20  E-value=0.0038  Score=35.00  Aligned_cols=73  Identities=8%  Similarity=0.059  Sum_probs=49.5

Q ss_pred             eeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCC-cee--EEee--ccccceEEE-EecCCCEEE-EecCCCcEEEEeC
Q psy14456          6 VRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATG-QAF--QALS--GHSGHVLSL-YNWGGATVL-SGSHDRTVRFWDL   78 (93)
Q Consensus         6 v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~-~~~--~~~~--~~~~~v~~~-~~~~~~~~~-s~~~~~~i~~~d~   78 (93)
                      +.++.|+|+    +++++++......|.+|+.... ...  ....  ........+ |+|+++++. +.-.++.|.+|++
T Consensus       147 ~h~v~~sPd----G~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~  222 (365)
T d1jofa_         147 IHGMVFDPT----ETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVI  222 (365)
T ss_dssp             EEEEEECTT----SSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             ceEEEECCC----CCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEe
Confidence            578999999    7777776655667888875533 221  1221  223456778 999998775 5557899999998


Q ss_pred             CCCc
Q psy14456         79 RTRG   82 (93)
Q Consensus        79 ~~~~   82 (93)
                      ..+.
T Consensus       223 ~~~~  226 (365)
T d1jofa_         223 DPAT  226 (365)
T ss_dssp             CTTT
T ss_pred             cCCC
Confidence            7653

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.16  E-value=0.004  Score=32.77  Aligned_cols=76  Identities=8%  Similarity=-0.036  Sum_probs=46.0

Q ss_pred             ceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEec---CCCcEEEEeCCC
Q psy14456          5 TVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGS---HDRTVRFWDLRT   80 (93)
Q Consensus         5 ~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~---~~~~i~~~d~~~   80 (93)
                      ......|+|+    +..++......+...+|..................... |+|+|+.|+-.+   ....+.++++..
T Consensus       172 ~~~~~~~spd----g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg  247 (269)
T d2hqsa1         172 QNQDADVSSD----GKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDG  247 (269)
T ss_dssp             EEEEEEECTT----SSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTS
T ss_pred             cccccccccc----cceeEEEeecCCceeeeEeecccccceEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCC
Confidence            3456678888    66666655556666665544333223333344445566 999999876332   345678888876


Q ss_pred             Ccee
Q psy14456         81 RGCT   84 (93)
Q Consensus        81 ~~~~   84 (93)
                      +...
T Consensus       248 ~~~~  251 (269)
T d2hqsa1         248 RFKA  251 (269)
T ss_dssp             CCEE
T ss_pred             CCEE
Confidence            6543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=97.03  E-value=0.0023  Score=37.23  Aligned_cols=70  Identities=14%  Similarity=0.087  Sum_probs=48.5

Q ss_pred             eeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCc-----------eeEEeeccccceEEE-EecCCCEEEEecCCCcE
Q psy14456          6 VRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQ-----------AFQALSGHSGHVLSL-YNWGGATVLSGSHDRTV   73 (93)
Q Consensus         6 v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~-----------~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i   73 (93)
                      ...+.++|+    +++++++|..++++.+||+++..           ++.....-.-....- |.+++..+.+...|+.+
T Consensus       260 PhGv~vSPD----Gkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v  335 (441)
T d1qnia2         260 PHGLNTSPD----GKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQV  335 (441)
T ss_dssp             CCCEEECTT----SCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEE
T ss_pred             ccCceECCC----CCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEcccccceE
Confidence            356788998    78888888789999999986421           111111111112333 88888888899999999


Q ss_pred             EEEeCC
Q psy14456         74 RFWDLR   79 (93)
Q Consensus        74 ~~~d~~   79 (93)
                      ..|++.
T Consensus       336 ~kw~~~  341 (441)
T d1qnia2         336 CKWNIA  341 (441)
T ss_dssp             EEEEHH
T ss_pred             EEeccc
Confidence            999974

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=96.95  E-value=0.0065  Score=32.97  Aligned_cols=68  Identities=15%  Similarity=0.176  Sum_probs=48.2

Q ss_pred             ceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCC
Q psy14456          5 TVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLR   79 (93)
Q Consensus         5 ~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~   79 (93)
                      .+..+++.|+    ++++++.. .++.|..++....  ...+......+..+ |.+++.++++...+..+..++..
T Consensus        29 ~~e~iAv~pd----G~l~vt~~-~~~~I~~i~p~g~--~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~   97 (302)
T d2p4oa1          29 FLENLASAPD----GTIFVTNH-EVGEIVSITPDGN--QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLV   97 (302)
T ss_dssp             CEEEEEECTT----SCEEEEET-TTTEEEEECTTCC--EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEE
T ss_pred             CcCCEEECCC----CCEEEEeC-CCCEEEEEeCCCC--EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEec
Confidence            3667889998    77777655 5888888775533  23333455677888 99999988888777777766654

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=96.03  E-value=0.041  Score=30.08  Aligned_cols=68  Identities=18%  Similarity=0.186  Sum_probs=47.4

Q ss_pred             EEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCC-EEEEecCCCcEEEEeCCC
Q psy14456          8 DVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGA-TVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~-~~~s~~~~~~i~~~d~~~   80 (93)
                      .+++..+    ++.+++.. ..+.|.+|+.+.+..+..+........++ |.+++. ++++.+.++.|...++..
T Consensus       230 GiavD~~----GnlyVa~~-~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         230 GMDFDED----NNLLVANW-GSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EEEEBTT----CCEEEEEE-TTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             eeEEecC----CcEEEEEc-CCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence            4555555    56666654 48899999988777666665444566778 988876 567777788888877653

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=95.90  E-value=0.063  Score=31.14  Aligned_cols=55  Identities=7%  Similarity=-0.087  Sum_probs=40.1

Q ss_pred             ceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEee-ccccceEEE-EecCCCE
Q psy14456          5 TVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALS-GHSGHVLSL-YNWGGAT   63 (93)
Q Consensus         5 ~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~-~~~~~v~~~-~~~~~~~   63 (93)
                      ........|+    +++++.....+..|.++|+++++....+. ........+ |+++++.
T Consensus        73 ~~s~t~gtpD----Gr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t  129 (441)
T d1qnia2          73 HISMTDGRYD----GKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKT  129 (441)
T ss_dssp             EEEEETTEEE----EEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBC
T ss_pred             CcceecccCC----CCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCE
Confidence            3444455677    78887777679999999999998877654 344566777 8988763

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.85  E-value=0.037  Score=29.23  Aligned_cols=74  Identities=7%  Similarity=-0.031  Sum_probs=40.2

Q ss_pred             eeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCCCce
Q psy14456          6 VRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRGC   83 (93)
Q Consensus         6 v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~~   83 (93)
                      -..+++.++    +..+++.....+.+..++............-......+ +.+++.++++....+.+.+++-.+...
T Consensus        16 P~~vavd~d----G~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~   90 (260)
T d1rwia_          16 PSGVAVDSA----GNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQT   90 (260)
T ss_dssp             EEEEEECTT----CCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCE
T ss_pred             CCEEEEcCC----CCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeecccee
Confidence            367788877    56666544346777666554333222111112233456 788888877776666666665444433

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=95.58  E-value=0.068  Score=29.20  Aligned_cols=76  Identities=7%  Similarity=-0.056  Sum_probs=49.6

Q ss_pred             eEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCC-ceeE----E---eeccccceEEE-EecCCCEEEEecCCCcEEEEe
Q psy14456          7 RDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATG-QAFQ----A---LSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWD   77 (93)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~-~~~~----~---~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d   77 (93)
                      +.++|+|+    ++.++.+....+.|..|+++.. ....    .   ........-.+ +..++++.++....+.|.++|
T Consensus       180 nGia~s~d----g~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~  255 (319)
T d2dg1a1         180 NGIALSTD----EKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFN  255 (319)
T ss_dssp             EEEEECTT----SSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEEC
T ss_pred             eeeeeccc----cceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEEC
Confidence            56889988    5655554556889999987532 1111    1   11111223457 888999888888899999999


Q ss_pred             CCCCceeeEe
Q psy14456         78 LRTRGCTNVL   87 (93)
Q Consensus        78 ~~~~~~~~~~   87 (93)
                      . .|+.+..+
T Consensus       256 p-~G~~l~~i  264 (319)
T d2dg1a1         256 K-RGYPIGQI  264 (319)
T ss_dssp             T-TSCEEEEE
T ss_pred             C-CCcEEEEE
Confidence            5 57766655

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=95.37  E-value=0.067  Score=31.81  Aligned_cols=60  Identities=13%  Similarity=0.018  Sum_probs=42.4

Q ss_pred             CeEEEEeCCCCceeEEeeccccceEEEEecCCCEEEEecCCCcEEEEeCCCCceeeEecC
Q psy14456         30 CKIYVTDCATGQAFQALSGHSGHVLSLYNWGGATVLSGSHDRTVRFWDLRTRGCTNVLTP   89 (93)
Q Consensus        30 ~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~   89 (93)
                      |.+..+|+.+++.+-.........-....-.+.+++.++.|+.++.+|.++|+.+-.+..
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~  516 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPT  516 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             ccEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEEC
Confidence            568889999998876554221110111233677888899999999999999999877753

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.14  E-value=0.055  Score=32.24  Aligned_cols=60  Identities=13%  Similarity=0.123  Sum_probs=43.2

Q ss_pred             CCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCCCceeeEecC
Q psy14456         29 DCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRGCTNVLTP   89 (93)
Q Consensus        29 ~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~   89 (93)
                      .|.+..+|+.+++.+-...... +...- ....+.+++.++.|+.++.+|.++|+.+-.+..
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~~-p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~  525 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT  525 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CCeEEEEcCCCCcEEeecCCCC-CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEEC
Confidence            3678888999988776554222 11111 344677888899999999999999999877753

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.89  E-value=0.11  Score=27.66  Aligned_cols=71  Identities=17%  Similarity=0.248  Sum_probs=47.3

Q ss_pred             eeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeecc--ccceEEE-EecCCCEEEEecCCCcEEEEeCCCCc
Q psy14456          6 VRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGH--SGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRG   82 (93)
Q Consensus         6 v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~--~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~   82 (93)
                      ...+++.++    ++.+++-...+..|.+++ ..++.+..+...  ......+ +.+++.++++ +.+..|.+|.+.+..
T Consensus       202 P~giavD~~----G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~vav~~dG~l~V~-~~n~~v~~fr~~~~~  275 (279)
T d1q7fa_         202 PIGVGINSN----GEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLA  275 (279)
T ss_dssp             EEEEEECTT----CCEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCCC
T ss_pred             CcccccccC----CeEEEEECCCCcEEEEEC-CCCCEEEEEeCCCCCCCEeEEEEeCCCcEEEE-eCCCeEEEEEeeeec
Confidence            466778777    666666432255788887 457666555322  2345677 8899876655 468899999988754

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=94.65  E-value=0.093  Score=31.44  Aligned_cols=58  Identities=17%  Similarity=0.024  Sum_probs=40.9

Q ss_pred             CeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCCCceeeEec
Q psy14456         30 CKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRGCTNVLT   88 (93)
Q Consensus        30 ~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~   88 (93)
                      |.+..||+.+++.+-..... .....- ..-.+.+++.+..|+.++.+|.++|+.+-.+.
T Consensus       453 G~l~A~D~~TG~~~W~~~~~-~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~  511 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFK  511 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ceEEEEeCCCCceecccCCC-CCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEE
Confidence            57888899988876543211 111111 33356778889999999999999999887774

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.51  E-value=0.14  Score=26.98  Aligned_cols=70  Identities=4%  Similarity=0.015  Sum_probs=46.5

Q ss_pred             eeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCC
Q psy14456          6 VRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT   80 (93)
Q Consensus         6 v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~   80 (93)
                      ...+++.++    +..+++.. .++.+..++.+...........-.....+ +.+++.++++....+.+..++...
T Consensus       142 p~~i~~~~~----g~~~v~~~-~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~  212 (260)
T d1rwia_         142 PDGVAVDNS----GNVYVTDT-DNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGS  212 (260)
T ss_dssp             CCEEEECTT----CCEEEEEG-GGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTC
T ss_pred             cceeeecCC----CCEeeecc-ccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCC
Confidence            356777776    56666654 47888888876554333222334455677 888888888888788888776553

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=94.37  E-value=0.18  Score=29.89  Aligned_cols=59  Identities=10%  Similarity=0.007  Sum_probs=40.9

Q ss_pred             CeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCCCcEEEEeCCCCceeeEecC
Q psy14456         30 CKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRGCTNVLTP   89 (93)
Q Consensus        30 ~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~   89 (93)
                      +.+..+|+.+++.+-..... .....- ..-.+.+++.++.|+.++.+|.++|+.+-.+..
T Consensus       438 G~l~A~D~~tGk~~W~~~~~-~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l  497 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEA  497 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             cceEEEeCCCCeEeeeccCC-CCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEEC
Confidence            56788888888876544311 111111 233567788899999999999999998877653

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.17  E-value=0.14  Score=30.48  Aligned_cols=59  Identities=15%  Similarity=-0.039  Sum_probs=39.7

Q ss_pred             CeEEEEeCCCCceeEEeeccccceEEEEecCCCEEEEecCCCcEEEEeCCCCceeeEec
Q psy14456         30 CKIYVTDCATGQAFQALSGHSGHVLSLYNWGGATVLSGSHDRTVRFWDLRTRGCTNVLT   88 (93)
Q Consensus        30 ~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~   88 (93)
                      |.+..+|+++++.+-..............-.+.+++.++.|+.++.+|.++|+.+-.+.
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~  502 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFK  502 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ccEEEeccCCCceeeEcCCCCCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEE
Confidence            56888888888876544311111101123346678889999999999999999887764

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=93.94  E-value=0.23  Score=27.53  Aligned_cols=72  Identities=6%  Similarity=0.010  Sum_probs=42.8

Q ss_pred             eeEEEEEecCCCCcceEEEeeeCC-----CeEEEEeCCCCceeE---Ee---eccccceEEE-Eec-CCCEEEEe-cCCC
Q psy14456          6 VRDVCFIEDTSNKSSLLISGGAGD-----CKIYVTDCATGQAFQ---AL---SGHSGHVLSL-YNW-GGATVLSG-SHDR   71 (93)
Q Consensus         6 v~~~~~~~~~~~~~~~~~~~g~~~-----~~v~~~~~~~~~~~~---~~---~~~~~~v~~~-~~~-~~~~~~s~-~~~~   71 (93)
                      ...+.++|+    +++++++...+     ..+..|+......+.   .+   .........+ ++| ++++++.+ ..++
T Consensus       257 ~~~i~~spd----G~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~  332 (365)
T d1jofa_         257 ADVCALTFS----GKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEG  332 (365)
T ss_dssp             EEEEEECTT----SSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSC
T ss_pred             ccceEECCC----CCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCC
Confidence            457888998    67777654212     237777665432221   11   1122334567 887 78877655 5779


Q ss_pred             cEEEEeCCCC
Q psy14456         72 TVRFWDLRTR   81 (93)
Q Consensus        72 ~i~~~d~~~~   81 (93)
                      .|.+|++...
T Consensus       333 ~v~v~~~~~~  342 (365)
T d1jofa_         333 WLEIYRWKDE  342 (365)
T ss_dssp             EEEEEEEETT
T ss_pred             eEEEEEEeCC
Confidence            9999987644

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=93.35  E-value=0.24  Score=25.69  Aligned_cols=55  Identities=9%  Similarity=0.100  Sum_probs=36.9

Q ss_pred             CCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEec----CC--CcEEEEeCCCCcee
Q psy14456         29 DCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGS----HD--RTVRFWDLRTRGCT   84 (93)
Q Consensus        29 ~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~----~~--~~i~~~d~~~~~~~   84 (93)
                      ++.|.+.++..+... .+..+.+..... |+|+|+.|+-..    .+  ..+.+.+...+...
T Consensus        20 ~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~   81 (281)
T d1k32a2          20 CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIK   81 (281)
T ss_dssp             TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEE
T ss_pred             CCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceE
Confidence            677888898877754 455566667777 999999887432    12  23666677666543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.29  E-value=0.24  Score=25.63  Aligned_cols=60  Identities=12%  Similarity=0.112  Sum_probs=37.3

Q ss_pred             cceeEEEEEecCCCCcceEEEeeeCCCe--EEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEec
Q psy14456          4 GTVRDVCFIEDTSNKSSLLISGGAGDCK--IYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGS   68 (93)
Q Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~g~~~~~--v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~   68 (93)
                      +.+...+|+|+    ++.|+-...+.+.  +.+.+...+.. ..+..+....... |+|++..++...
T Consensus        39 ~~~~sP~wSPD----Gk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~i~~~~  101 (269)
T d2hqsa1          39 QPLMSPAWSPD----GSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDGSKLAFAL  101 (269)
T ss_dssp             SCEEEEEECTT----SSEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             CceeeeEECCC----CCEEEEEEeeccCcceeeeecccCce-eEEeeeecccccceecCCCCeeeEee
Confidence            45668899999    6776644333443  44445554443 3344456666677 999988877544

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.31  E-value=0.53  Score=27.10  Aligned_cols=78  Identities=5%  Similarity=-0.032  Sum_probs=48.3

Q ss_pred             ceeEEEEEecCCCCcceEEEee--------eCCCeEEEEeCCCCceeEEee--ccccceEEE-EecCCCEEEEecCCCcE
Q psy14456          5 TVRDVCFIEDTSNKSSLLISGG--------AGDCKIYVTDCATGQAFQALS--GHSGHVLSL-YNWGGATVLSGSHDRTV   73 (93)
Q Consensus         5 ~v~~~~~~~~~~~~~~~~~~~g--------~~~~~v~~~~~~~~~~~~~~~--~~~~~v~~~-~~~~~~~~~s~~~~~~i   73 (93)
                      .+....|+|+    ++.++...        +..+...++|+.++.......  .....+... |+|+|..++-.. ++.+
T Consensus        62 ~~~~~~~SpD----~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl  136 (465)
T d1xfda1          62 RAIRYEISPD----REYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNI  136 (465)
T ss_dssp             TCSEEEECTT----SSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEE
T ss_pred             ccceeEECCC----CCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceE
Confidence            4556678998    56655432        124678899998876543221  223344446 999998887654 5667


Q ss_pred             EEEeCCCCceeeEe
Q psy14456         74 RFWDLRTRGCTNVL   87 (93)
Q Consensus        74 ~~~d~~~~~~~~~~   87 (93)
                      .+.+...+...+..
T Consensus       137 ~~~~~~~~~~~~lt  150 (465)
T d1xfda1         137 YYCAHVGKQAIRVV  150 (465)
T ss_dssp             EEESSSSSCCEEEE
T ss_pred             EEEecCCCceEEEe
Confidence            77777666554443

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=92.25  E-value=0.5  Score=27.56  Aligned_cols=70  Identities=17%  Similarity=0.124  Sum_probs=47.8

Q ss_pred             eeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCC-----------cee-EEeeccccceEEEEecCCCEEEEecCCCcE
Q psy14456          6 VRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATG-----------QAF-QALSGHSGHVLSLYNWGGATVLSGSHDRTV   73 (93)
Q Consensus         6 v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~-----------~~~-~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i   73 (93)
                      ...+..+|+    +++++++|..+..+.++|++.-           ..+ ....---++....|..+++...|--.|+++
T Consensus       277 PHGV~vSPD----GKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~fd~~g~aytslfids~v  352 (459)
T d1fwxa2         277 PHGCNMAPD----KKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQV  352 (459)
T ss_dssp             CCCEEECTT----SSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEE
T ss_pred             CCceEECCC----CCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccccccCCCceEEEEeeccceE
Confidence            346778888    7888888878999999998632           111 111112234333377778777777799999


Q ss_pred             EEEeCC
Q psy14456         74 RFWDLR   79 (93)
Q Consensus        74 ~~~d~~   79 (93)
                      .-|++.
T Consensus       353 ~kw~~~  358 (459)
T d1fwxa2         353 VKWNIE  358 (459)
T ss_dssp             EEEEHH
T ss_pred             EEEecc
Confidence            999975

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=92.17  E-value=0.42  Score=25.58  Aligned_cols=74  Identities=14%  Similarity=0.134  Sum_probs=49.5

Q ss_pred             cceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCc-eeEEe--eccccceEEE-EecCCCEEEEecCCCcEEEEeCC
Q psy14456          4 GTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQ-AFQAL--SGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLR   79 (93)
Q Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~-~~~~~--~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~   79 (93)
                      +.+.+++|.++    ++.+++.. .++.+..++..... ....+  .........+ +.+++.++++-..++.+..+|..
T Consensus        68 ~~~~gla~~~d----G~l~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~  142 (302)
T d2p4oa1          68 GKVSGLAFTSN----GDLVATGW-NADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVV  142 (302)
T ss_dssp             SEEEEEEECTT----SCEEEEEE-CTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETT
T ss_pred             CCcceEEEcCC----CCeEEEec-CCceEEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeecc
Confidence            46788999988    67666655 47777766654322 11222  1233456677 88899888888888888888877


Q ss_pred             CCc
Q psy14456         80 TRG   82 (93)
Q Consensus        80 ~~~   82 (93)
                      .+.
T Consensus       143 ~~~  145 (302)
T d2p4oa1         143 QPS  145 (302)
T ss_dssp             TTE
T ss_pred             CCc
Confidence            654

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=92.06  E-value=0.46  Score=25.80  Aligned_cols=81  Identities=9%  Similarity=0.123  Sum_probs=49.9

Q ss_pred             eEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCcee------EEeec-cccceEEE-EecCCCEEEEecCCCcEEEEeC
Q psy14456          7 RDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAF------QALSG-HSGHVLSL-YNWGGATVLSGSHDRTVRFWDL   78 (93)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~------~~~~~-~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~   78 (93)
                      +.++|+|++......++.+.+..+.|..|++.....+      ..+.+ .....-.+ +..+++++++....+.|.+||.
T Consensus       175 NGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp  254 (314)
T d1pjxa_         175 NGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGP  254 (314)
T ss_dssp             EEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred             eeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeC
Confidence            3678888742222345555556788888876533222      12222 12233467 8889998888777889999998


Q ss_pred             CCCceeeEe
Q psy14456         79 RTRGCTNVL   87 (93)
Q Consensus        79 ~~~~~~~~~   87 (93)
                      ..+.....+
T Consensus       255 ~~g~~~~~i  263 (314)
T d1pjxa_         255 DGGQPKMRI  263 (314)
T ss_dssp             TCBSCSEEE
T ss_pred             CCCEEEEEE
Confidence            877654444

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=91.24  E-value=0.56  Score=25.19  Aligned_cols=76  Identities=13%  Similarity=0.092  Sum_probs=48.7

Q ss_pred             eEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCC------ce--eEEeeccccceEEE-EecCCCEEEEecCCCcEEEEe
Q psy14456          7 RDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATG------QA--FQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWD   77 (93)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~------~~--~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d   77 (93)
                      ..++|+++    ++.++.+.+..+.|..++++..      +.  ...+.+..+..-.+ +..++++.++.-..+.|..||
T Consensus       151 Ng~~~s~d----~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~d  226 (295)
T d2ghsa1         151 NSICFSPD----GTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYD  226 (295)
T ss_dssp             EEEEECTT----SCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEEC
T ss_pred             ceeeecCC----CceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEec
Confidence            56778877    5555555556888888876422      11  11222334455667 888899888776778899998


Q ss_pred             CCCCceeeEe
Q psy14456         78 LRTRGCTNVL   87 (93)
Q Consensus        78 ~~~~~~~~~~   87 (93)
                      . .++.+..+
T Consensus       227 p-~G~~~~~i  235 (295)
T d2ghsa1         227 T-DGNHIARY  235 (295)
T ss_dssp             T-TCCEEEEE
T ss_pred             C-CCcEeeEe
Confidence            5 46555555

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=90.63  E-value=0.68  Score=25.08  Aligned_cols=72  Identities=10%  Similarity=0.080  Sum_probs=46.5

Q ss_pred             eeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEeeccccceEEE-EecCCCEEEEecCC----CcEEEEeCCC
Q psy14456          6 VRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHD----RTVRFWDLRT   80 (93)
Q Consensus         6 v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~----~~i~~~d~~~   80 (93)
                      +..++|.++    ++++++ ....+.|..++.+.+.....+.........+ +.+++.++++...+    ..+...+...
T Consensus        42 lEG~~~D~~----G~Ly~~-D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~  116 (319)
T d2dg1a1          42 LEGLNFDRQ----GQLFLL-DVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENG  116 (319)
T ss_dssp             EEEEEECTT----SCEEEE-ETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTS
T ss_pred             cEeCEECCC----CCEEEE-ECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCC
Confidence            467788877    665555 4468888888887776555554455566788 89999887765332    3344445444


Q ss_pred             Cc
Q psy14456         81 RG   82 (93)
Q Consensus        81 ~~   82 (93)
                      +.
T Consensus       117 ~~  118 (319)
T d2dg1a1         117 DN  118 (319)
T ss_dssp             CS
T ss_pred             ce
Confidence            43

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=90.38  E-value=0.65  Score=24.51  Aligned_cols=76  Identities=14%  Similarity=0.245  Sum_probs=47.8

Q ss_pred             ceeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEee--ccccceEEE-EecCCCEEEEecC-CCcEEEEeCCC
Q psy14456          5 TVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALS--GHSGHVLSL-YNWGGATVLSGSH-DRTVRFWDLRT   80 (93)
Q Consensus         5 ~v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~--~~~~~v~~~-~~~~~~~~~s~~~-~~~i~~~d~~~   80 (93)
                      ....+++.++    +..+++.. ..+.|.+|+.. ++.+..+.  +.......+ +.++++.+++-.. +..|.+++. .
T Consensus       158 ~~~~i~~d~~----g~i~v~d~-~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~  230 (279)
T d1q7fa_         158 FPNGVVVNDK----QEIFISDN-RAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-D  230 (279)
T ss_dssp             SEEEEEECSS----SEEEEEEG-GGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-T
T ss_pred             ccceeeeccc----eeEEeeec-cccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-C
Confidence            3455666665    55555544 58889998854 55555552  344456777 8898887776543 456888874 4


Q ss_pred             CceeeEe
Q psy14456         81 RGCTNVL   87 (93)
Q Consensus        81 ~~~~~~~   87 (93)
                      |+.+..+
T Consensus       231 G~~~~~~  237 (279)
T d1q7fa_         231 GQLISAL  237 (279)
T ss_dssp             SCEEEEE
T ss_pred             CCEEEEE
Confidence            6655554

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.89  E-value=0.91  Score=26.11  Aligned_cols=57  Identities=18%  Similarity=0.186  Sum_probs=35.6

Q ss_pred             eeEEEEEecCCCCcceEEEeeeCCCeEEEEeCCCCceeEEee-ccccc-----------------eEEE-EecCCCEEEE
Q psy14456          6 VRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALS-GHSGH-----------------VLSL-YNWGGATVLS   66 (93)
Q Consensus         6 v~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~-~~~~~-----------------v~~~-~~~~~~~~~s   66 (93)
                      +....|+|+    ++.++-.  +++.+.+.+...+...+... +..+.                 -..+ |+|++..|+.
T Consensus       116 l~~~~wSPD----G~~iafv--~~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf  189 (465)
T d1xfda1         116 LQYAGWGPK----GQQLIFI--FENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAY  189 (465)
T ss_dssp             CSBCCBCSS----TTCEEEE--ETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEE
T ss_pred             cceeeeccC----CceEEEE--ecceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEE
Confidence            445789999    6666654  37788888776655443221 21111                 1467 9999999886


Q ss_pred             ec
Q psy14456         67 GS   68 (93)
Q Consensus        67 ~~   68 (93)
                      ..
T Consensus       190 ~~  191 (465)
T d1xfda1         190 AA  191 (465)
T ss_dssp             EE
T ss_pred             EE
Confidence            54