Psyllid ID: psy14461

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-----
Protein Sequence
MFSGLDFLSKSQTSGLNAIHAIPSFHEAKTCSPTASSCDLLPSFETPPAYISRLSYENRILIFTHAVLREENARAERYLNARGDRFAVLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAVERRCLPEPRNSALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccHHHHHHHHHcccEEEEEEccccccEEEEcccHHHHHHccccHHHHcccccccccccEEEEEcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEEEcccEEEEccEEEEEccEEEEEcccccccccccEEEcccccccccccccEEEEEcccHHHHHHHHHHHcccccEEEEEccccccccHHHHHHHHHHHHHHcccEEEccccEEEEEcccccEEEEEEcccccccccccccEEEEEccccccccccccccccEEEcccccEEcccccccccccEEEEcccccccccccHHHHHHHHHHHHHHcccccccccccccccEEccccccccccccHHHHHHHHccccEEEEEcccccccccccccccccEEEEEEEccccEEEEEEEcccccEEEEEEccccccEEEEEEEccccHHHHHHHHHHHHccccHHHHccc
Secondary Structure Prediction (SSPRO)
cccccHHHcccccccHHHHHHccccccccccccccccccccccccccccHEEHccHHHHEEEHHHHHHHHcHHHHHHccHcHHHHHHHHHHHEEccccHHEcccHHHHHHccccccccEEEccccccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEEEcccEEEEccEEEEccEEEEEccccccccccccccEcccccccccccccEEEEEcHHHHHHHHHHHHHHccccEEEEEEccccccccHHHHHHHHHHHHHccccEccccccEEEEEccccEEEEEEccccccEEEEEEEEEEEEEccccccccccHHHccEEEccccEEEEEcccccccccEEEEEEcccccccccHHHHHHHHHHHHHHHcccccccccccccEEEcccccEEEEEccHHHHHHHccHHHEEEEEEEEccHHHHHcccccccEEEEEEEccccEEEEEEEEcccccEEEEEEccccEEEEEEcccccHHHHHHHHHHHHHccccHHHcccc
Coil and Loop (DISEMBL)
MFSGLDFLSKsqtsglnaihaipsfheaktcsptasscdllpsfetppayisrLSYENRILIFTHAVLREENARAERYLNARGDRFAVLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLyypvamsdleleqdSTSALNVTIRNWNAATKLIKRFCIRAKNDSMRELKALGIDIVRTAaaftnphtiklsnrsvtgFNFLLAVERrclpeprnsalisaddlfrlgawpgktlvlGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVSIQCCVIEKVISsfdgmkgvrgfhpeskepfADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCnekdqtsvgniFAVGgivhgkpnnaSMAAISARLIIERLYGMQdqlmdysflpvvvrgdvefgtvgmsEEAAAKVYGADGLviykssyptfdnlldpllpeNFVKLVCLkggervlgiHVIGQNNFVKLVCLkggervlgIHVIGQNVAGMIFGYSLALRKFLTKAELDGT
Flexible Loop (DISEMBL)
MFSGLDFLSKSQTSGLNAIHAIPSFHEAKTCSPTASSCDLLPSFETPPAYISRLSYENRILIFTHAVLREENARAERYLNARGDRFAVLYLDRIGDEGILLEEELkrqtnqrrdelqergshlsfrkkrRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAftnphtiklsnrsvtGFNFLLAVERRCLPEPRNSALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVSIQCCVIEKVISSFDGMKGVRGfhpeskepfADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT
Low Complexity Region (SEG)
MFSGLDFLSKSQTSGLNAIHAIPSFHEAKTCSPTASSCDLLPSFETPPAYISRLSYENRILIFTHAVLREENARAERYLNARGDRFAVLYLDRIGDEGIlleeelKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAVERRCLPEPRNSALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT
Disordered region (IsUnstruct)
*****************AIHAIPSFHEAKTC***ASSCDLLPSFETPPAYISRLSYENRILIFTHAVLREENARAERYLNARGDRFAVLYLDRIGDEGILLE**************************RRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAVERRCLPEPRNSALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLT*******
Disordered Region (DISOPRED)
**SG***LSKSQTSGLNAIHAIPSFH*************************SRLSYENRILIF***************LNARGDRFAVLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAVERRCLPEPRNSALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVSIQCC***************RGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDG*
Disordered Region (DISEMBL)
MFSGLDFLSKSQTSGLNAIHAIPSFHEAKTCSPTASSCDLLPSFETPPAYISRLSYENRILIFTHAVLREENARAERYLNARGDRFAVLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAVERRCLPEPRNSALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT
Disordered Region (DISPRO)
**********SQTSGLNA***IPSFHEA*TC*PTASSCDLLPSFETPPAYISRLSYENRILIFTHAVLREENARAERYLNARGDRFAVLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAVERRCLPEPRNSALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTK******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFSGLDFLSKSQTSGLNAIHAIPSFHEAKTCSPTASSCDLLPSFETPPAYISRLSYENRILIFTHAVLREENARAERYLNARGDRFAVLYLDRIGDEGxxxxxxxxxxxxxxxxxxxxxGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAVERRCLPEPRNSALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	535	2.2.26 [Sep-21-2011]
P91938	596	Thioredoxin reductase 1,	yes	N/A	0.642	0.577	0.306	7e-36
Q99MD6	697	Thioredoxin reductase 3 (	yes	N/A	0.654	0.502	0.298	9e-35
Q86VQ6	682	Thioredoxin reductase 3 (	yes	N/A	0.663	0.520	0.306	5e-34
Q9VNT5	516	Thioredoxin reductase 2,	no	N/A	0.644	0.668	0.298	4e-33
Q9NNW7	524	Thioredoxin reductase 2,	no	N/A	0.485	0.496	0.318	5e-32
O89049	499	Thioredoxin reductase 1,	no	N/A	0.579	0.621	0.309	2e-31
O62768	499	Thioredoxin reductase 1,	no	N/A	0.697	0.747	0.284	8e-31
Q9N2I8	511	Thioredoxin reductase 2,	no	N/A	0.553	0.579	0.322	1e-30
Q9JMH6	613	Thioredoxin reductase 1,	no	N/A	0.579	0.505	0.307	1e-30
Q60151	450	Glutathione reductase OS=	yes	N/A	0.706	0.84	0.269	2e-30

>sp|P91938|TRXR1_DROME Thioredoxin reductase 1, mitochondrial OS=Drosophila melanogaster GN=Trxr-1 PE=1 SV=2

 Score =  152 bits (384), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 119/388 (30%), Positives = 196/388 (50%), Gaps = 44/388 (11%)

Query: 156 NWNAATKLIKRFCIRAKNDSMR-ELKALGIDIVRTAAAFTNPHTI----KLSNRSVTGFN 210
           +W+   + ++   I++ N   R +L+   ++ +    +F + HT+    K   R++T   
Sbjct: 200 DWHKLVQSVQNH-IKSVNWVTRVDLRDKKVEYINGLGSFVDSHTLLAKLKSGERTITAQT 258

Query: 211 FLLAVERRCLPEPRNSAL-------ISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFL 263
           F++AV  R    PR   +       I++DDLF L   PGKTLV+G   + +E A  L  L
Sbjct: 259 FVIAVGGR----PRYPDIPGAVEYGITSDDLFSLDREPGKTLVVGAGYIGLECAGFLKGL 314

Query: 264 GVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVS-IQCCVIEKVISSFDGMKGVRGFHPE 322
           G   T++    +L+ FDQ+M  ++ +S+ + G+  ++  V   V    DG   V+  + E
Sbjct: 315 GYEPTVMVRSIVLRGFDQQMAELVAASMEERGIPFLRKTVPLSVEKQDDGKLLVKYKNVE 374

Query: 323 SKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIV 382
           + E   DV+ TV+ A+ +K     LNL + GV ++K    V + ++ T+V NI+AVG I+
Sbjct: 375 TGEEAEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQKDKIPV-DSQEATNVANIYAVGDII 433

Query: 383 HGKPNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGA 442
           +GKP    +A ++ RL+  RLYG   Q MDY  +   V   +E+  VG+SEE A K +GA
Sbjct: 434 YGKPELTPVAVLAGRLLARRLYGGSTQRMDYKDVATTVFTPLEYACVGLSEEDAVKQFGA 493

Query: 443 DGLVIYKSSY-PTFDNLLDPLLPENFVKLVCLKG-GERVLGIHVIGQNNFVKLVCLKGGE 500
           D + ++   Y PT     +  +P+  V+   LK   ER                   G +
Sbjct: 494 DEIEVFHGYYKPT-----EFFIPQKSVRYCYLKAVAER------------------HGDQ 530

Query: 501 RVLGIHVIGQNVAGMIFGYSLALRKFLT 528
           RV G+H IG     +I G++ AL+  LT
Sbjct: 531 RVYGLHYIGPVAGEVIQGFAAALKSGLT 558

Thioredoxin system is a major player in glutathione metabolism, due to the demonstrated absence of a glutathione reductase. Functionally interacts with the Sod/Cat reactive oxidation species (ROS) defense system and thereby has a role in preadult development and life span. Lack of a glutathione reductase suggests antioxidant defense in Drosophila, and probably in related insects, differs fundamentally from that in other organisms.
Drosophila melanogaster (taxid: 7227)
EC: 1EC: .EC: 8EC: .EC: 1EC: .EC: 9

>sp|Q99MD6|TRXR3_MOUSE Thioredoxin reductase 3 (Fragment) OS=Mus musculus GN=Txnrd3 PE=1 SV=2

 Score =  148 bits (374), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 120/402 (29%), Positives = 193/402 (48%), Gaps = 52/402 (12%)

Query: 156 NWNAATKLIKRFCIRAKNDSMR-ELKALGIDIVRTAAAFTNPHTIKLSNRS-----VTGF 209
           NW A T+ I+   I + N   R  L+  G+  V +   F + H IK +N+       T  
Sbjct: 295 NWEAMTEAIQSH-IGSLNWGYRVTLREKGVTYVNSFGEFVDLHKIKATNKKGQETFYTAS 353

Query: 210 NFLLAVERRCLPEPR-------NSALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNF 262
            F++A   R    PR           I++DDLF L   PG TLV+G S + +E A  L  
Sbjct: 354 KFVIATGER----PRYLGIQGDKEYCITSDDLFSLPYCPGCTLVVGASYVGLECAGFLAG 409

Query: 263 LGVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVSIQ----CCVIEKVISSFDGMKGVRG 318
           LG+ VT++    LL+ FDQEM   + S L + GV  Q      +++++     G   V  
Sbjct: 410 LGLDVTVMVRSVLLRGFDQEMAEKVGSYLEQQGVKFQRKFTPILVQQLEKGLPGKLKVVA 469

Query: 319 FHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKS-YVVCNEKDQTSVGNIFA 377
              E  E    ++ TV+ A+ +      + L  IGV I +K+  +  N+ +QT+V +++A
Sbjct: 470 KSTEGPETVEGIYNTVLLAIGRDSCTRKIGLEKIGVKINEKNGKIPVNDVEQTNVPHVYA 529

Query: 378 VGGIVHGKPNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAA 437
           +G I+ GKP    +A  + +L+  RL+G+  +  DY  +P  V   +E+G  G+SEE A 
Sbjct: 530 IGDILDGKPELTPVAIQAGKLLARRLFGVSLEKCDYINIPTTVFTPLEYGCCGLSEEKAI 589

Query: 438 KVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNN---FVKLV 494
           ++Y  + L +Y +       L  PL                     V G++N   + K++
Sbjct: 590 EMYKKENLEVYHT-------LFWPLE------------------WTVAGRDNNTCYAKII 624

Query: 495 CLK-GGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT 535
           C K   ERV+G H++G N   +  G++ A++  LTK  LD T
Sbjct: 625 CNKFDNERVVGFHLLGPNAGEITQGFAAAMKCGLTKQLLDDT 666

Displays thioredoxin reductase, glutaredoxin and glutathione reductase activities. Catalyzes disulfide bond isomerization. Promotes disulfide bond formation between GPX4 and various sperm proteins and may play a role in sperm maturation by promoting formation of sperm structural components.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 9

>sp|Q86VQ6|TRXR3_HUMAN Thioredoxin reductase 3 (Fragment) OS=Homo sapiens GN=TXNRD3 PE=1 SV=3

 Score =  146 bits (368), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 125/408 (30%), Positives = 189/408 (46%), Gaps = 53/408 (12%)

Query: 151 NVTIR-NWNAATKLIKRFCIRAKNDSMR-ELKALGIDIVRTAAAFTNPHTIKLSNRS--- 205
           N  +R NW   TK I+   I + N   R  L+   +  V +   F   H IK +N+    
Sbjct: 274 NQQVRHNWETMTKAIQNH-ISSLNWGYRLSLREKAVAYVNSYGEFVEHHKIKATNKKGQE 332

Query: 206 --VTGFNFLLAVERRCLPEPR-------NSALISADDLFRLGAWPGKTLVLGGSLMAVEI 256
              T   F++A   R    PR           I++DDLF L   PGKTLV+G S +A+E 
Sbjct: 333 TYYTAAQFVIATGER----PRYLGIQGDKEYCITSDDLFSLPYCPGKTLVVGASYVALEC 388

Query: 257 AATLNFLGVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVSIQCCVIEKVISSFD----G 312
           A  L   G+ VT++    LL+ FDQEM   + S + + GV      I  ++   +    G
Sbjct: 389 AGFLAGFGLDVTVMVRSILLRGFDQEMAEKVGSYMEQHGVKFLRKFIPVMVQQLEKGSPG 448

Query: 313 MKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKS-YVVCNEKDQTS 371
              V     E  E    V+ TV+ A+ +      + L  IGV I +KS  +  N+ +QT+
Sbjct: 449 KLKVLAKSTEGTETIEGVYNTVLLAIGRDSCTRKIGLEKIGVKINEKSGKIPVNDVEQTN 508

Query: 372 VGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGM 431
           V  ++AVG I+  KP    +A  S +L+ +RL+G   +  DY  +P  V   +E+G  G+
Sbjct: 509 VPYVYAVGDILEDKPELTPVAIQSGKLLAQRLFGASLEKCDYINVPTTVFTPLEYGCCGL 568

Query: 432 SEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNN-- 489
           SEE A +VY  + L IY +       L  PL                     V G+ N  
Sbjct: 569 SEEKAIEVYKKENLEIYHT-------LFWPLE------------------WTVAGRENNT 603

Query: 490 -FVKLVCLK-GGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT 535
            + K++C K   +RV+G H++G N   +  G++ A++  LTK  LD T
Sbjct: 604 CYAKIICNKFDHDRVIGFHILGPNAGEVTQGFAAAMKCGLTKQLLDDT 651

Displays thioredoxin reductase, glutaredoxin and glutathione reductase activities. Catalyzes disulfide bond isomerization. Promotes disulfide bond formation between GPX4 and various sperm proteins and may play a role in sperm maturation by promoting formation of sperm structural components.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 9

>sp|Q9VNT5|TRXR2_DROME Thioredoxin reductase 2, mitochondrial OS=Drosophila melanogaster GN=Trxr-2 PE=2 SV=1

 Score =  142 bits (359), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 116/389 (29%), Positives = 190/389 (48%), Gaps = 44/389 (11%)

Query: 156 NWNAATKLIKRFCIRAKNDSMR-ELKALGIDIVRTAAAFTNPHTIKL------SNRSVTG 208
           +W    + ++   I++ N   R +L+   ++ V + A F + HTI+        +R VT 
Sbjct: 118 DWRKLVRSVQNH-IKSVNWVTRVDLRDKKVEYVNSMATFRDSHTIEYVAMPGAEHRQVTS 176

Query: 209 FNFLLAVERRCLPEPRNSAL-------ISADDLFRLGAWPGKTLVLGGSLMAVEIAATLN 261
              ++AV  R    PR   +       I++DD+F     PG+TLV+G   + +E A  L 
Sbjct: 177 EYVVVAVGGR----PRYPDIPGAVELGITSDDIFSYEREPGRTLVVGAGYVGLECACFLK 232

Query: 262 FLGVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVSIQCCVIEKVIS-SFDGMKGVRGFH 320
            LG   T++    +L+ FD++M  +L + +T+ G+      I K +    DG   VR  +
Sbjct: 233 GLGYEPTVMVRSIVLRGFDRQMSELLAAMMTERGIPFLGTTIPKAVERQADGRLLVRYRN 292

Query: 321 PESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGG 380
             ++   +DVF TV+ A+ +K     LNL   GV       VV +  + TSV +IFAVG 
Sbjct: 293 TTTQMDGSDVFDTVLWAIGRKGLIEDLNLDAAGVKTHDDKIVV-DAAEATSVPHIFAVGD 351

Query: 381 IVHGKPNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVY 440
           I++G+P    +A +S RL+  RL+    QLMDY+ +   V   +E+  VGMSEE A ++ 
Sbjct: 352 IIYGRPELTPVAILSGRLLARRLFAGSTQLMDYADVATTVFTPLEYSCVGMSEETAIELR 411

Query: 441 GADGLVIYKSSY-PTFDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGG 499
           GAD + ++   Y PT     +  +P+  V+   LK    V                  G 
Sbjct: 412 GADNIEVFHGYYKPT-----EFFIPQKSVRHCYLKAVAEV-----------------SGD 449

Query: 500 ERVLGIHVIGQNVAGMIFGYSLALRKFLT 528
           +++LG+H IG     +I G++ AL+  LT
Sbjct: 450 QKILGLHYIGPVAGEVIQGFAAALKTGLT 478

Thioredoxin system is a major player in glutathione metabolism, due to the demonstrated absence of a glutathione reductase. Functionally interacts with the Sod/Cat reactive oxidation species (ROS) defense system and thereby has a role in preadult development and life span. Lack of a glutathione reductase suggests antioxidant defense in Drosophila, and probably in related insects, differs fundamentally from that in other organisms.

Drosophila melanogaster (taxid: 7227)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 9

>sp|Q9NNW7|TRXR2_HUMAN Thioredoxin reductase 2, mitochondrial OS=Homo sapiens GN=TXNRD2 PE=1 SV=3

 Score =  139 bits (350), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 84/264 (31%), Positives = 145/264 (54%), Gaps = 4/264 (1%)

Query: 229 ISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILL 288
           I++DD+F L   PGKTLV+G S +A+E A  L  +G+  T++     L+ FDQ+M  +++
Sbjct: 206 ITSDDIFWLKESPGKTLVVGASYVALECAGFLTGIGLDTTIMMRSIPLRGFDQQMSSMVI 265

Query: 289 SSLTKAGVS-IQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAAL 347
             +   G   ++ C   +V    DG   V      + +     F TV+ A+ +  D  +L
Sbjct: 266 EHMASHGTRFLRGCAPSRVRRLPDGQLQVTWEDSTTGKEDTGTFDTVLWAIGRVPDTRSL 325

Query: 348 NLHHIGVDIKKKSY-VVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGM 406
           NL   GVD    +  ++ + ++ TSV +I+A+G +V G+P    +A ++ RL+++RL+G 
Sbjct: 326 NLEKAGVDTSPDTQKILVDSREATSVPHIYAIGDVVEGRPELTPIAIMAGRLLVQRLFGG 385

Query: 407 QDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFD-NLLDPLLPE 465
              LMDY  +P  V   +E+G VG+SEE A   +G + + +Y + Y   +  +      +
Sbjct: 386 SSDLMDYDNVPTTVFTPLEYGCVGLSEEEAVARHGQEHVEVYHAHYKPLEFTVAGRDASQ 445

Query: 466 NFVKLVCLKGGER-VLGIHVIGQN 488
            +VK+VCL+   + VLG+H +G N
Sbjct: 446 CYVKMVCLREPPQLVLGLHFLGPN 469

Maintains thioredoxin in a reduced state. Implicated in the defenses against oxidative stress. May play a role in redox-regulated cell signaling.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 9

>sp|O89049|TRXR1_RAT Thioredoxin reductase 1, cytoplasmic OS=Rattus norvegicus GN=Txnrd1 PE=1 SV=5

 Score =  137 bits (346), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 114/368 (30%), Positives = 178/368 (48%), Gaps = 58/368 (15%)

Query: 193 FTNPHTIKLSN-----RSVTGFNFLLAVERRCLPEPR-------NSALISADDLFRLGAW 240
           F  PH I  +N     +  +   FL+A   R    PR           IS+DDLF L   
Sbjct: 134 FIGPHKIMATNNKGKEKVYSAERFLIATGER----PRYLGIPGDKEYCISSDDLFSLPYC 189

Query: 241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVS-IQ 299
           PGKTLV+G S +A+E A  L  +G+ VT++    LL+ FDQ+M   +   + + G+  I+
Sbjct: 190 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIR 249

Query: 300 CCV---IEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDI 356
             V   IE++ +   G   V      S+E   D F TV+ A+ +      + L  +GV I
Sbjct: 250 QFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVGRDSCTRTIGLETVGVKI 309

Query: 357 KKKS-YVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQDQLMDYSF 415
            +K+  +   +++QT+V  I+A+G I+ GK     +A  + RL+ +RLYG      DY  
Sbjct: 310 NEKTGKIPVTDEEQTNVPYIYAIGDILEGKLELTPVAIQAGRLLAQRLYGGSTVKCDYDN 369

Query: 416 LPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKS-------SYPTFDNLLDPLLPENFV 468
           +P  V   +E+G  G+SEE A + +G + + +Y S       + P+ DN       + + 
Sbjct: 370 VPTTVFTPLEYGCCGLSEEKAVEKFGEENIEVYHSFFWPLEWTVPSRDN------NKCYA 423

Query: 469 KLVC-LKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFL 527
           K++C LK  ERV+G HV+G N          GE              +  G++ AL+  L
Sbjct: 424 KVICNLKDNERVVGFHVLGPN---------AGE--------------VTQGFAAALKCGL 460

Query: 528 TKAELDGT 535
           TK +LD T
Sbjct: 461 TKQQLDST 468

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 9

>sp|O62768|TRXR1_BOVIN Thioredoxin reductase 1, cytoplasmic OS=Bos taurus GN=TXNRD1 PE=2 SV=3

 Score =  135 bits (340), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 124/436 (28%), Positives = 205/436 (47%), Gaps = 63/436 (14%)

Query: 129 RRLYYPVAMSDLELEQDSTSALNV--TIR-NWNAATKLIKRFCIRAKNDSMR-ELKALGI 184
           ++L +  A+    L        NV  T++ +W   T+ ++   I + N   R  L+   +
Sbjct: 67  KKLMHQAALLGQALRDSRNYGWNVEETVKHDWERMTEAVQNH-IGSLNWGYRVALREKKV 125

Query: 185 DIVRTAAAFTNPHTIKLSN-----RSVTGFNFLLAVERRCLPEPR-------NSALISAD 232
                   F  PH IK +N     +  +   FL+A   R    PR           IS+D
Sbjct: 126 TYENAYGEFVGPHRIKATNNKGKEKIYSAERFLIATGER----PRYLGIPGDKEYCISSD 181

Query: 233 DLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILLSSLT 292
           DLF L   PGKTLV+G S +A+E A  L  +G+ VT++    LL+ FDQ+M   +   + 
Sbjct: 182 DLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMQ 241

Query: 293 KAGVS-IQCCV---IEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALN 348
           + G+  I+  V   +E++ +   G   V     +S +     + TV+ A+ +      + 
Sbjct: 242 EHGIKFIRQFVPIKVEQIEAGTPGRLRVIAKSTDSDQTIEGEYNTVLLAIGRDACTRKIG 301

Query: 349 LHHIGVDIKKKS-YVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQ 407
           L ++GV I +K+  +   E++QT+V  I+A+G I+ GK     +A  + RL+ +RLYG  
Sbjct: 302 LENVGVKINEKTGKIPVTEEEQTNVPYIYAIGDILEGKLELTPVAIQAGRLLAQRLYGGS 361

Query: 408 DQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSY-------PTFDNLLD 460
               DY  +P  V   +E+G+ G+SEE A + +G + + +Y S +       P+ DN   
Sbjct: 362 TVKCDYENVPTTVFTPLEYGSCGLSEEKAVEKFGEENVEVYHSYFWPLEWTIPSRDN--- 418

Query: 461 PLLPENFVKLVC-LKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGY 519
               + + K+VC +K  ERV+G HV+G N          GE              +  G+
Sbjct: 419 ---NKCYAKVVCNIKDNERVVGFHVLGPN---------AGE--------------VTQGF 452

Query: 520 SLALRKFLTKAELDGT 535
           + AL+  LTK +LD T
Sbjct: 453 AAALKCGLTKDQLDST 468

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 9

>sp|Q9N2I8|TRXR2_BOVIN Thioredoxin reductase 2, mitochondrial OS=Bos taurus GN=TXNRD2 PE=1 SV=2

 Score =  134 bits (338), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 101/313 (32%), Positives = 157/313 (50%), Gaps = 17/313 (5%)

Query: 191 AAFTNPHTIKLSNRSVTGFNFLLAVE--------RRCLPEPRNSAL---ISADDLFRLGA 239
           A+F + HT+     S  G   LL+ E        R   P     AL   I++DDLF L  
Sbjct: 146 ASFVDTHTV--CGVSKGGEETLLSAEHIVIATGGRPRYPTHIEGALEYGITSDDLFWLKE 203

Query: 240 WPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVSI- 298
            PGKTLV+G S +A+E A  L  LG+  T++     L+ FDQ+M  ++   +   G  I 
Sbjct: 204 SPGKTLVVGASYVALECAGLLTGLGLDTTVMIRSVPLRAFDQQMASLVTEHMAGHGTRIL 263

Query: 299 QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKK 358
           + C  EKV         V      S    A  F TV+ A+ +  + A+LNL   GV    
Sbjct: 264 RGCAPEKVEKLPGQQLRVTWVDLTSDRKDAGTFDTVLWAIGRVPETASLNLEKAGVHTNP 323

Query: 359 -KSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQDQLMDYSFLP 417
               ++ + ++ TSV +I+A+G +  G+P     A ++ RL+ +RL G    LMDYS +P
Sbjct: 324 VTGKILVDAQETTSVPHIYAIGDVAEGRPELTPTAIMAGRLLAQRLSGRTSDLMDYSSVP 383

Query: 418 VVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFD-NLLDPLLPENFVKLVCLKGG 476
             V   +E+G VG+SEEAA   +G + + +Y + Y   +  +      + ++K+VCL+  
Sbjct: 384 TTVFTPLEYGCVGLSEEAAVARHGEEHVEVYHAFYKPLEFTVPQRDASQCYIKMVCLREP 443

Query: 477 ER-VLGIHVIGQN 488
            + VLG+H +G N
Sbjct: 444 PQLVLGLHFLGPN 456

Maintains thioredoxin in a reduced state. Implicated in the defenses against oxidative stress. May play a role in redox-regulated cell signaling.

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 9

>sp|Q9JMH6|TRXR1_MOUSE Thioredoxin reductase 1, cytoplasmic OS=Mus musculus GN=Txnrd1 PE=1 SV=3

 Score =  134 bits (338), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 113/368 (30%), Positives = 178/368 (48%), Gaps = 58/368 (15%)

Query: 193 FTNPHTIKLSN-----RSVTGFNFLLAVERRCLPEPR-------NSALISADDLFRLGAW 240
           F  PH I  +N     +  +   FL+A   R    PR           IS+DDLF L   
Sbjct: 248 FIGPHRIVATNNKGKEKIYSAERFLIATGER----PRYLGIPGDKEYCISSDDLFSLPYC 303

Query: 241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVS-IQ 299
           PGKTLV+G S +A+E A  L  +G+ VT++    LL+ FDQ+M   +   + + G+  I+
Sbjct: 304 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIR 363

Query: 300 CCV---IEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDI 356
             V   IE++ +   G   V      S+E     F TV+ A+ +      + L  +GV I
Sbjct: 364 QFVPTKIEQIEAGTPGRLRVTAQSTNSEETIEGEFNTVLLAVGRDSCTRTIGLETVGVKI 423

Query: 357 KKKS-YVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQDQLMDYSF 415
            +K+  +   +++QT+V  I+A+G I+ GK     +A  + RL+ +RLYG  +   DY  
Sbjct: 424 NEKTGKIPVTDEEQTNVPYIYAIGDILEGKLELTPVAIQAGRLLAQRLYGGSNVKCDYDN 483

Query: 416 LPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKS-------SYPTFDNLLDPLLPENFV 468
           +P  V   +E+G  G+SEE A + +G + + +Y S       + P+ DN       + + 
Sbjct: 484 VPTTVFTPLEYGCCGLSEEKAVEKFGEENIEVYHSFFWPLEWTVPSRDNN------KCYA 537

Query: 469 KLVC-LKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFL 527
           K++C LK  ERV+G HV+G N          GE              +  G++ AL+  L
Sbjct: 538 KIICNLKDDERVVGFHVLGPN---------AGE--------------VTQGFAAALKCGL 574

Query: 528 TKAELDGT 535
           TK +LD T
Sbjct: 575 TKQQLDST 582

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 9

>sp|Q60151|GSHR_STRTR Glutathione reductase OS=Streptococcus thermophilus GN=gor PE=3 SV=1

 Score =  134 bits (337), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 112/416 (26%), Positives = 199/416 (47%), Gaps = 38/416 (9%)

Query: 128 KRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKR--FCIRAKNDSMRELKALGID 185
           K+ ++Y   +++           +VTI N++ AT    R  +  R      R   + G++
Sbjct: 50  KKVMWYGAQVAETLHRYAGEYGFDVTINNFDFATLKANRQAYIDRIHGSFERGFDSNGVE 109

Query: 186 IVRTAAAFTNPHTIKLSNRSVTGFNFLLAVERRCL-PE-PRNSALISADDLFRLGAWPGK 243
            V   A F +PHT++++    T  + L+A     L P  P +   I++D  F L   P +
Sbjct: 110 RVYEYARFVDPHTVEVAGELYTAPHILIATGGHPLYPNIPGSEYGITSDGFFELDEVPKR 169

Query: 244 TLVLGGSLMAVEIAATLNFLGVPVTL-VYSRRLLKHFDQEMVRILLSSLTKAG--VSIQC 300
           T V+G   +AVE+A  LN LG    L V   R L+ FD++++ +L+  + K+G  + +  
Sbjct: 170 TAVIGAGYIAVEVAGVLNALGSDTHLFVRKDRPLRTFDKDIIDVLVDEMAKSGPTLHMHA 229

Query: 301 CVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKS 360
              E V ++ D +        +++E        ++ A+ +  + +   L   GV++ ++ 
Sbjct: 230 NATEVVKNADDSLT----ISFDNEETI--TVDCLIWAVGRAANTSGFGLEKTGVELTERG 283

Query: 361 YVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQ-DQLMDYSFLPVV 419
            +  +E + TSV  I+A+G +  GK +   +A  + R + ERL+  + D  +DY+ +  V
Sbjct: 284 NIYSDEFENTSVPGIYALGDVT-GKLDLTPVAVKAGRQLSERLFNNKVDAKLDYTDVATV 342

Query: 420 VRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVCLKGGERV 479
           V      G +G++EE A   YGA+ + +YKSS               F  +    G  R 
Sbjct: 343 VFSHPAIGAIGLTEEKAIAKYGAENIKVYKSS---------------FTPMYTALGDNR- 386

Query: 480 LGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT 535
                  Q + +KLV L   E+++G+H IG  V  MI G+S+A++   TKA+ D T
Sbjct: 387 -------QLSTMKLVTLGEDEKIIGLHGIGYGVDEMIQGFSVAIKMGATKADFDNT 435

Maintains high levels of reduced glutathione in the cytosol.

Streptococcus thermophilus (taxid: 1308)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	535
405962165	491	Thioredoxin reductase 3 [Crassostrea gig	0.657	0.716	0.31	7e-40
145539962	486	hypothetical protein [Paramecium tetraur	0.712	0.783	0.289	4e-37
157887771	598	thioredoxin-glutathione reductase [Fasci	0.620	0.555	0.306	5e-37
1848294	495	glutathione reductase family member [Mus	0.603	0.652	0.314	6e-37
118388266	486	thioredoxin and glutathione reductase fa	0.719	0.792	0.300	7e-37
302746479	509	thioredoxin reductase 2 [Haemonchus cont	0.663	0.697	0.283	1e-36
298358873	623	thioredoxin reductase 3 [Ciona intestina	0.710	0.609	0.305	2e-36
194893675	491	GG19308 [Drosophila erecta] gi|190649568	0.642	0.700	0.314	7e-36
145549037	471	hypothetical protein [Paramecium tetraur	0.706	0.802	0.268	1e-35
195480168	491	GE15773 [Drosophila yakuba] gi|194188688	0.642	0.700	0.317	1e-35

>gi|405962165|gb|EKC27867.1| Thioredoxin reductase 3 [Crassostrea gigas]

 Score =  171 bits (434), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 124/400 (31%), Positives = 200/400 (50%), Gaps = 48/400 (12%)

Query: 155 RNWNAATKLIKRFCIRAKNDSMR-ELKALGIDIVRTAAAFTNPHTIKLSNRS-----VTG 208
            NW      I+ + I + N   R +L+   +D     A F + HT+K  N+       T 
Sbjct: 92  HNWTTMKDAIQDY-IGSLNWGYRVQLRDKKVDYHNAYAEFVDEHTVKAFNKKGQEIKKTA 150

Query: 209 FNFLLAVERRCLPEPRNSAL-------ISADDLFRLGAWPGKTLVLGGSLMAVEIAATLN 261
            +F+LA+  R    PR   +       I++DDLF L   PGKTL++G S +++E    L+
Sbjct: 151 NHFVLAMGER----PRYPDIPGAKEYGITSDDLFSLPYCPGKTLLVGASYVSLECGGFLH 206

Query: 262 FLGVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVS-IQCCVIEKVISSFDGMKG---VR 317
            LG+ VT++    LL+ FDQ+M   +   +   GV  ++ CV  K+    DG  G   V 
Sbjct: 207 ALGLNVTVMVRSILLRGFDQQMAEKIGDYMEVEGVKFVRPCVPTKIEKLEDGQPGKYRVT 266

Query: 318 GFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFA 377
           G + +  E F D F TV+ A+ +    +++ L  +GV   K  ++  +E++ T+V NI+A
Sbjct: 267 GKYDDGME-FTDEFNTVIFAIGRDPCTSSIGLDKVGVKTNKSGFIPVDEEESTNVSNIYA 325

Query: 378 VGGIVHGKPNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAA 437
           +G I  GKP    +A  + RL+  RLYG+  +  DY  +P  V   +E+G +G SEE A 
Sbjct: 326 IGDICEGKPELTPVAIQAGRLLANRLYGLGKERTDYINVPTTVFTPLEYGCIGYSEEDAI 385

Query: 438 KVYGADGLVIYKSSYPTFDNLLDPLLPEN--FVKLVCLKGGERVLGIHVIGQNNFVKLVC 495
           K +G D L +Y +++   +  +    PEN  + KL+CL                      
Sbjct: 386 KKFGEDKLEVYHTNFWPLEWTV-AKRPENSCYAKLICL---------------------- 422

Query: 496 LKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT 535
           +   E+V+G+HV+G N   +  GY++A+R   TKA+ D T
Sbjct: 423 IPEKEKVIGLHVLGPNAGEITQGYAVAMRLGATKADFDAT 462

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|145539962|ref|XP_001455671.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124423479|emb|CAK88274.1| unnamed protein product [Paramecium tetraurelia]

 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 123/425 (28%), Positives = 206/425 (48%), Gaps = 44/425 (10%)

Query: 128 KRRLYYPVAMSDLELEQDSTSALNVTI---RNWNAATK----LIKRFCIRAKNDSMRELK 180
           K+ +++   + +L  +Q     ++  +    NW    +     I++     KN  MR   
Sbjct: 61  KKLMHFAATLGELRHDQVEAGWVDTQVDSKHNWEKMVENVNNHIRKLNFGYKNQLMRG-- 118

Query: 181 ALGIDIVRTAAAFTNPHTIKLSN-----RSVTGFNFLLAVE-RRCLPE--PRNSAL-ISA 231
              +      A   + +TIKL++      +VT  N L+AV  R   PE  P    L I++
Sbjct: 119 --DVKYYNKLAELIDANTIKLTDNKGQIETVTAKNILIAVGGRPSYPENIPNIQKLVITS 176

Query: 232 DDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILLSSL 291
           DDLF L   PGKTLV+G S +A+E    L+ +G  V ++    LL+ FDQE+   +   +
Sbjct: 177 DDLFWLQENPGKTLVVGASYVALECGGFLHGIGNEVAIMVRSILLRGFDQEIAEKIGLYM 236

Query: 292 TKAGVS-IQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLH 350
            + G+  I+ CV + + ++ D  + V       K  + ++F TV+ A  +  D   LNL 
Sbjct: 237 EEKGIRFIRGCVPDMIEATEDNKRKVTWIINGQK--YEEIFDTVLVATGRISDTQKLNLE 294

Query: 351 HIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQDQL 410
            +GV++ K   ++C+  D+TSV NIFA+G  V G+P     A    +L+  RL+    +L
Sbjct: 295 KVGVNMNKNGKILCSADDKTSVPNIFAIGDCVEGRPELTPTAIKCGQLLANRLFNKATEL 354

Query: 411 MDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKL 470
           M Y F+   V   +E+G +G SEE A K +G D + +Y S       +  P L  N+ ++
Sbjct: 355 MSYEFVATTVFTPLEYGCIGYSEEDAIKKFGEDKITVYHS-------IFKP-LEWNYFEM 406

Query: 471 VCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKA 530
                          G++ F KL+ L    RV+G H +G +   +  GY++A++  +TK 
Sbjct: 407 HS-------------GESCFAKLIVLNDNRRVIGFHYLGPHAGEVTQGYAVAMKMGVTKE 453

Query: 531 ELDGT 535
           + D T
Sbjct: 454 QFDST 458

Source: Paramecium tetraurelia strain d4-2

Species: Paramecium tetraurelia

Genus: Paramecium

Family: Parameciidae

Order: Peniculida

Class: Oligohymenophorea

Superkingdom: Eukaryota

>gi|157887771|emb|CAM96615.1| thioredoxin-glutathione reductase [Fasciola hepatica]

 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 116/378 (30%), Positives = 192/378 (50%), Gaps = 46/378 (12%)

Query: 178 ELKALGIDIVRTAAAFTNPHTIKLSNR-----SVTGFNFLLAVERRC----LPEPRNSAL 228
           +L+++ ++ V   A   +PHTIK + +     +VT    +LA   R     +P  +  A 
Sbjct: 216 QLRSINVEYVNAFAEVVDPHTIKYTKKNKETGTVTAKVIILATGERPRYPGIPGDKEYA- 274

Query: 229 ISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILL 288
           I++DDLF L   PGKTLV+G S +A+E A  L   G   T++     L+ FDQ+M  ++ 
Sbjct: 275 ITSDDLFWLPYPPGKTLVVGASYVALECAGFLTRFGFDTTVMVRSIFLRGFDQQMADMIG 334

Query: 289 SSLTKAGVS-IQCCVIEKV--ISSFD------GMKGVRGFHPESKEPFADVFKTVVNAME 339
             + + G   ++ CV   +  I + D      G+  V+G + E+ E F   F T+V A+ 
Sbjct: 335 EYMKEHGTKFVRSCVPTAIEEIEARDKENQKPGLYRVKGKY-ENGEEFVGEFNTIVMAIG 393

Query: 340 KKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLI 399
           +   +    +  +G+ + K   V+C + +Q+SV +I+A+G IV GKP    +A  + R +
Sbjct: 394 RDPTWDRKAMESVGLKLDKAKRVICADNEQSSVDSIYAIGDIVSGKPQLTPVAIHAGRYL 453

Query: 400 IERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLL 459
             RLY    +L DY  +P  +   +E+G  G+SEE A   YG + + +Y S +   +  +
Sbjct: 454 ARRLYAGDIELTDYVNVPTTIFTPIEYGACGLSEEDAITKYGKENIEVYHSHFIPLEWTV 513

Query: 460 DPLLPEN-FVKLVCLKG-GERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIF 517
            P  PE+ + K++CLK   ERV+G+HV+G N          GE              M  
Sbjct: 514 -PHRPEDGYAKIICLKSDSERVIGLHVLGPN---------AGE--------------MTQ 549

Query: 518 GYSLALRKFLTKAELDGT 535
           G+S+A++   TKA+ D T
Sbjct: 550 GFSVAMKAGATKADFDRT 567

Source: Fasciola hepatica

Species: Fasciola hepatica

Genus: Fasciola

Family: Fasciolidae

Order: Echinostomida

Class: Trematoda

Phylum: Platyhelminthes

Superkingdom: Eukaryota

>gi|1848294|gb|AAC69637.1| glutathione reductase family member [Musca domestica]

 Score =  161 bits (408), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 115/366 (31%), Positives = 193/366 (52%), Gaps = 43/366 (11%)

Query: 178 ELKALGIDIVRTAAAFTNPHTI--KLSN---RSVTGFNFLLAVERRCLPEPRNSAL---- 228
           +L+   ++ +  A +F +PHT+  K+ N   R++TG N ++AV  R    PR   +    
Sbjct: 120 DLRDKKVEYINGAGSFKDPHTVVAKMKNGSERTLTGRNVVIAVGGR----PRYPDIPGAV 175

Query: 229 ---ISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVR 285
              I++DDLF L   PGKTLV+G   + +E A  L  LG   T++    +L+ FDQ+M  
Sbjct: 176 EYGITSDDLFSLDKEPGKTLVVGAGYIGLECAGFLKGLGYDATVMVRSIVLRGFDQQMAN 235

Query: 286 ILLSSLTKAGVSIQCCVIEKVIS-SFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDF 344
           ++  S+ + G+      I K +  + DG   V+  + E++E  +DV+ TV+ A+ +K   
Sbjct: 236 MVADSMVERGIPFLHKTIPKSVEKTQDGRLLVKYVNTETQEEGSDVYDTVLWAIGRKGLV 295

Query: 345 AALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLY 404
             LNL   G+++K     V NE +QT+V +IFAVG I+HG+P    +A  + RL+  RL+
Sbjct: 296 DDLNLGAAGIEVKADKIAV-NEAEQTNVPHIFAVGDIIHGRPELTPVAIHAGRLLARRLF 354

Query: 405 GMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSY-PTFDNLLDPLL 463
           G   Q+MDY+ +   V   +E+  VGM+EE A + +G D + ++   Y PT     +  +
Sbjct: 355 GGSKQIMDYTDVATTVFSPLEYACVGMAEEDAIQKFGEDNIEVFHGFYKPT-----EFFI 409

Query: 464 PENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGG-ERVLGIHVIGQNVAGMIFGYSLA 522
           P+  V+                    +VK V  + G ++VLG+H +G     +I G++ A
Sbjct: 410 PQKSVRYC------------------YVKAVAERSGDQKVLGLHYLGPVAGEVIQGFAAA 451

Query: 523 LRKFLT 528
           ++  LT
Sbjct: 452 VKSGLT 457

Source: Musca domestica

Species: Musca domestica

Genus: Musca

Family: Muscidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|118388266|ref|XP_001027232.1| thioredoxin and glutathione reductase family protein [Tetrahymena thermophila] gi|89309002|gb|EAS06990.1| thioredoxin and glutathione reductase family protein [Tetrahymena thermophila SB210]

 Score =  161 bits (408), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 128/426 (30%), Positives = 204/426 (47%), Gaps = 41/426 (9%)

Query: 128 KRRLYYPVAMSDLELEQDSTSALNVTI---RNWNAATKLIKRFCIRAKNDSMRELKALGI 184
           K+  +Y     D+ LE    +   V      NW+     ++ +  R     M  LK   +
Sbjct: 65  KKMFHYASEFGDI-LEHQRNAGWEVPHNINHNWSTLVNKVQTYIKRLNGIYMDALKDKKV 123

Query: 185 DIVRTAAAFTNPHTIKLSN-----RSVTGFNFLLAVERRC-----LPEPRNSALISADDL 234
                 A+  + +TI+L +       VT    LLA+  R      +P  R  A I++DD+
Sbjct: 124 TYYNAFASLKDKNTIQLEDINGNKTEVTSKYILLALGGRPKYLDEIPNIRELA-ITSDDI 182

Query: 235 FRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILLSSLTKA 294
           F     PGKTLV+G S +A+E A  LN LG  VT++   ++L +FDQE  + +   + K 
Sbjct: 183 FFQNTPPGKTLVVGASYVALECAGFLNGLGYDVTVLVRSKVLANFDQEFAQKVKLFMQKH 242

Query: 295 GVS-IQCCVIEKVISSFDG--MKGVRGFHPESKEPFA-DVFKTVVNAMEKKFDFAALNLH 350
           GV  I+  V   +  S  G  +K V   + ++ E    D FKTV+ A+ +      +NL 
Sbjct: 243 GVKFIEGAVPTSIKLSEQGQDLKHVEYKNTQTGELVGQDHFKTVLIAVGRGAQTKGVNLE 302

Query: 351 HIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQDQL 410
            +GV + K   +VC++ D T++ NIF+VG  V G+      A  + R++  RL+  Q QL
Sbjct: 303 QVGVQLTKDGKIVCDDSDTTAIPNIFSVGDCVEGRLELTPTAIKAGRMLARRLFNNQKQL 362

Query: 411 MDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKL 470
           M Y  +P  +   +EFGTVG+SEE AAK YG D L I+ S++   D            + 
Sbjct: 363 MQYHNVPTTIFTPLEFGTVGLSEEQAAKKYGKDNLNIWISTFKPMD-----------WQY 411

Query: 471 VCLKGGERVLGIHVIGQNNFVKLVCLKG-GERVLGIHVIGQNVAGMIFGYSLALRKFLTK 529
              K  +R +           KL+ +K   ++V+G+H IG   A +  G+++A++    K
Sbjct: 412 SVAKQDDRAI----------CKLITVKNDNDKVIGLHYIGPQAAEVTQGFAVAIQMGANK 461

Query: 530 AELDGT 535
            + D T
Sbjct: 462 EDFDNT 467

Source: Tetrahymena thermophila

Species: Tetrahymena thermophila

Genus: Tetrahymena

Family: Tetrahymenidae

Order: Hymenostomatida

Class: Oligohymenophorea

Superkingdom: Eukaryota

>gi|302746479|gb|ADL62853.1| thioredoxin reductase 2 [Haemonchus contortus]

 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 113/398 (28%), Positives = 197/398 (49%), Gaps = 43/398 (10%)

Query: 155 RNWNAATKLIKRFCIRAKNDSMR-ELKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLL 213
            +W    K++    I+A N   R +L   GI +    A+F + HTIK  +        +L
Sbjct: 107 HSWQTLVKVVNDR-IKANNWIYRVQLNEKGIKLYTAFASFIDSHTIKTVSADKKKTEHIL 165

Query: 214 AVERRCL--------PE-PRNSALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLG 264
             ++  +        P+ P +   I++DDLF L   PGKTLV+G S +A+E A  L  +G
Sbjct: 166 HAKKVVIATGLRPRYPDVPGSEYGITSDDLFSLSKSPGKTLVVGASYVALECAGLLAGVG 225

Query: 265 VPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVSIQCCVIEKVISS--FDGMKGVRGFHPE 322
            PV L+   + LK FDQ+ V++++++L + GV++   +  K ++S   DG K    F   
Sbjct: 226 FPVDLLIRSKPLKSFDQDCVKLVMANLQEQGVNV---IYAKEVASVQLDGNKKKVSFKDS 282

Query: 323 --SKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKS-YVVCNEKDQTSVGNIFAVG 379
             ++    + + T+V A+ +      LNL   GV I K S  ++    DQTS   I+A+G
Sbjct: 283 AATQSSTNETYDTIVWAIGRNPQHGDLNLAGAGVKIDKSSGKIIVGNDDQTSAEGIYAIG 342

Query: 380 GIVHGKPNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKV 439
            +V G+P     A  + +L+  R++    Q M+Y  +P  V   +E GTVG++EE A + 
Sbjct: 343 DVVQGRPELTPTAIRAGQLLARRIFAGASQTMNYDNVPTTVFTPLELGTVGLTEEEATRK 402

Query: 440 YGADGLVIYKSSYPTFDNLL--DPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLK 497
           +G++ + ++ S +  F+ ++  DP     + K++CL+   R                   
Sbjct: 403 FGSENIEVFHSHFTPFEYIIPQDPSSAHCYAKVICLRNPPR------------------- 443

Query: 498 GGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT 535
              ++LG+H++  N A +I GY++A    +T  +L  T
Sbjct: 444 ---KILGMHIVSPNAAEIIQGYAVAFNAGITFEQLTDT 478

Source: Haemonchus contortus

Species: Haemonchus contortus

Genus: Haemonchus

Family: Haemonchidae

Order: Rhabditida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|298358873|ref|NP_001177260.1| thioredoxin reductase 3 [Ciona intestinalis]

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 131/429 (30%), Positives = 207/429 (48%), Gaps = 49/429 (11%)

Query: 129 RRLYYPVAMSDLELEQDSTSALNVT---IRN-WNAATKLIKRFCIRAKNDSMR-ELKALG 183
           ++L +  +M    +E   +    +T   ++N W    + ++ + I + N   R +L+   
Sbjct: 191 KKLMHQASMLGKSIEDAKSFGWQLTSEPVKNKWEGMVEAVQNY-IGSLNWGYRVQLREKK 249

Query: 184 IDIVRTAAAFTNPHTIKLSNR-----SVTGFNFLLAV-ERRCLPEPRNSA--LISADDLF 235
           ++ V   A F + HTI   NR      +T   F++AV ER   P+   +    I++DDLF
Sbjct: 250 VNYVNAYAKFEDQHTITTVNRRGKETKMTADKFIVAVGERPRYPDIPGAKEHCITSDDLF 309

Query: 236 RLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILLSSLTKAG 295
            L   PGKTLV+G S +A+E A  L  +G+ VT++     L+ FDQ+M       + K G
Sbjct: 310 SLPYCPGKTLVIGASYVALECAGFLKGIGLDVTVMVRSIFLRGFDQQMADKAAGYMEKEG 369

Query: 296 VS-IQCCV---IEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHH 351
           V  ++ CV   IE+V +   G+  V G   E+ E     + TV+ A+ +      + L  
Sbjct: 370 VQFLRRCVPVKIEQVEAGEPGLLRVTGKMTENGEEVTGDYNTVILAIGRDSVTKTIGLDK 429

Query: 352 IGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQDQLM 411
           I V + K   V  N+ DQT+V NIF +G    GKP    +A  + RL+ ERLYG      
Sbjct: 430 INVQVSKNGKVPVNDYDQTNVENIFCIGDNGEGKPELTPVAIHAGRLLSERLYGGSTLKC 489

Query: 412 DYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSS-YPTFDNLLDPLLPENFVKL 470
           DY  +P  V   +E+   G+SEEAA   YG D L +Y ++ +P                 
Sbjct: 490 DYEGVPTTVFTPLEYSCCGLSEEAAIAKYGEDNLEVYHTNVWP----------------- 532

Query: 471 VCLKGGERVLGIHVIGQNN---FVKLVCLK-GGERVLGIHVIGQNVAGMIFGYSLALRKF 526
                    L   V G +N   +VK +  K   ERV+G+H +G N   ++ G++ A++  
Sbjct: 533 ---------LEWSVPGHDNNTCYVKAITNKLDSERVIGLHYLGPNAGEVMQGFAAAMKCG 583

Query: 527 LTKAELDGT 535
           +TKA+LD T
Sbjct: 584 ITKAQLDQT 592

Source: Ciona intestinalis

Species: Ciona intestinalis

Genus: Ciona

Family: Cionidae

Order: Enterogona

Class: Ascidiacea

Phylum: Chordata

Superkingdom: Eukaryota

>gi|194893675|ref|XP_001977919.1| GG19308 [Drosophila erecta] gi|190649568|gb|EDV46846.1| GG19308 [Drosophila erecta]

 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 122/388 (31%), Positives = 197/388 (50%), Gaps = 44/388 (11%)

Query: 156 NWNAATKLIKRFCIRAKNDSMR-ELKALGIDIVRTAAAFTNPHTI----KLSNRSVTGFN 210
           +WN   + ++   I++ N   R +L+   ++ +    +F + HT+    K   R++T   
Sbjct: 95  DWNKLVQSVQNH-IKSVNWVTRVDLRDKKVEYINGLGSFVDSHTLLAKLKSGERTITAQT 153

Query: 211 FLLAVERRCLPEPRNSAL-------ISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFL 263
           F++AV  R    PR   +       I++DDLF L   PGKTLV+G   + +E A  L  L
Sbjct: 154 FVIAVGGR----PRYPDIPGAVEYGITSDDLFSLDREPGKTLVVGAGYIGLECAGFLKGL 209

Query: 264 GVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVS-IQCCVIEKVISSFDGMKGVRGFHPE 322
           G   T++    +L+ FDQ+M  ++ +S+ + G+  ++  V   V    DG   V+  + E
Sbjct: 210 GYEPTVMVRSIVLRGFDQQMAELVAASMEERGIPFLRKSVPLSVQKQDDGKLLVKYKNVE 269

Query: 323 SKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIV 382
           + E   DVF TV+ A+ +K     LNL + GV ++K    V + ++ T+V NI+AVG I+
Sbjct: 270 TDEEAEDVFDTVLWAIGRKGLVDDLNLPNAGVTVQKDKIPV-DSQEATNVANIYAVGDII 328

Query: 383 HGKPNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGA 442
           +GKP    +A ++ RL+  RLYG   Q MDY+ +   V   +E+  VG+SEE A K YGA
Sbjct: 329 YGKPELTPVAVLAGRLLARRLYGGATQRMDYNDVATTVFTPLEYACVGLSEEEAVKQYGA 388

Query: 443 DGLVIYKSSY-PTFDNLLDPLLPENFVKLVCLKG-GERVLGIHVIGQNNFVKLVCLKGGE 500
           D + ++   Y PT     +  +P+  V+   LK   ER                   G +
Sbjct: 389 DEIEVFHGYYKPT-----EFFIPQKSVRYCYLKAVAER------------------HGDQ 425

Query: 501 RVLGIHVIGQNVAGMIFGYSLALRKFLT 528
           RV G+H IG     +I G++ AL+  LT
Sbjct: 426 RVYGLHYIGPVAGEVIQGFAAALKSGLT 453

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|145549037|ref|XP_001460198.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124428027|emb|CAK92801.1| unnamed protein product [Paramecium tetraurelia]

 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 113/421 (26%), Positives = 197/421 (46%), Gaps = 43/421 (10%)

Query: 128 KRRLYYPVAMSDLELEQDST--SALNVT-IRNWNAATKLIKRFCIRAKNDSMRELKALGI 184
           K+  ++   + D   +Q     S +N     +WN   +++    +R        LK  G+
Sbjct: 63  KKMFHFAAQLGDYRQDQGKVGWSGINENGSHDWNKLVQVVSNLILRLNRMHENNLKIAGV 122

Query: 185 DIVRTAAAFTNPHTIKLSNR-----SVTGFNFLLAVERRCLP----EPRNSALISADDLF 235
             + + A   +P+TI+L+++     +VT    +++V  R       +P+N   I++DDLF
Sbjct: 123 QYINSLARLVDPNTIELTDQKGQKSTVTAEKIIVSVGARPKSYEGLDPQN--YITSDDLF 180

Query: 236 RLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILLSSLTKAG 295
            +   PGK+L++GGS +A+E A  LN LG    ++   +LL+ FDQ+  + +   + + G
Sbjct: 181 WMRRPPGKSLIIGGSYVALECAGFLNGLGFDTQVLVRSKLLRKFDQQYAQFVGQYMVERG 240

Query: 296 VSIQC-CVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGV 354
           V     C   K+       K   G     K      F TV+ A+ ++ +   L L  +G+
Sbjct: 241 VKFHYGCTPSKIEGQTVTWKDKNGKEQSEK------FDTVLMAISRQANTQNLGLERVGI 294

Query: 355 DIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQDQLMDYS 414
              +   ++ N+ DQTS  NI+AVG  V GK      A ++ R +I RLY     +MDY 
Sbjct: 295 QTDQDQKIIVNKYDQTSCPNIYAVGDCVSGKLELTPTAIMAGRKLIRRLYQGSSDIMDYR 354

Query: 415 FLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVCLK 474
            +   V   +E+  +G+SEE A ++YG D L I       F+N+  P+      +   + 
Sbjct: 355 DVATTVFTPLEYSCIGLSEEKAVEMYGKDNLKI-------FENVFKPVTWNISARNPSIC 407

Query: 475 GGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDG 534
            G               KL+  K  ++++G H IG   A +  G+++A+R   TK++ D 
Sbjct: 408 QG---------------KLIVRKDNDQIVGFHYIGPEAAEVTQGFAVAIRMGATKSDFDS 452

Query: 535 T 535
           T
Sbjct: 453 T 453

Source: Paramecium tetraurelia strain d4-2

Species: Paramecium tetraurelia

Genus: Paramecium

Family: Parameciidae

Order: Peniculida

Class: Oligohymenophorea

Superkingdom: Eukaryota

>gi|195480168|ref|XP_002101164.1| GE15773 [Drosophila yakuba] gi|194188688|gb|EDX02272.1| GE15773 [Drosophila yakuba]

 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 123/388 (31%), Positives = 196/388 (50%), Gaps = 44/388 (11%)

Query: 156 NWNAATKLIKRFCIRAKNDSMR-ELKALGIDIVRTAAAFTNPHT----IKLSNRSVTGFN 210
           +WN   + ++   I++ N   R +L+   ++ +    +F + HT    IK   R++T   
Sbjct: 95  DWNKLVQSVQNH-IKSVNWVTRVDLRDKKVEYINGLGSFVDSHTLLAKIKSGERTITAQT 153

Query: 211 FLLAVERRCLPEPRNSAL-------ISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFL 263
           F++AV  R    PR   +       I++DDLF L   PGKTLV+G   + +E A  L  L
Sbjct: 154 FVIAVGGR----PRYPDIPGAVEYGITSDDLFSLEREPGKTLVVGAGYIGLECAGFLKGL 209

Query: 264 GVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVS-IQCCVIEKVISSFDGMKGVRGFHPE 322
           G   T++    +L+ FDQ+M  ++ +S+ + G+  ++  V   V    DG   V+  + E
Sbjct: 210 GYEPTVMVRSIVLRGFDQQMAELVAASMEERGIPFLRKSVPLSVEKQDDGKLLVKYKNVE 269

Query: 323 SKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIV 382
           + E   DVF TV+ A+ +K     LNL + GV ++K    V + ++ T+V NI+AVG I+
Sbjct: 270 TGEEAEDVFDTVLWAIGRKGLVDDLNLPNAGVTVQKDKIPV-DSQEATNVANIYAVGDII 328

Query: 383 HGKPNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGA 442
           +GKP    +A ++ RL+  RLYG   Q MDY  +   V   +E+  VG+SEE A K YGA
Sbjct: 329 YGKPELTPVAVLAGRLLARRLYGGATQRMDYKDVATTVFTPLEYACVGLSEEDAVKEYGA 388

Query: 443 DGLVIYKSSY-PTFDNLLDPLLPENFVKLVCLKG-GERVLGIHVIGQNNFVKLVCLKGGE 500
           D + ++   Y PT     +  +P+  V+   LK   ER                   G +
Sbjct: 389 DEIEVFHGYYKPT-----EFFIPQKSVRYCYLKAVAER------------------HGDQ 425

Query: 501 RVLGIHVIGQNVAGMIFGYSLALRKFLT 528
           RV G+H IG     +I G++ AL+  LT
Sbjct: 426 RVYGLHYIGPVAGEVIQGFAAALKSGLT 453

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	535
UNIPROTKB|F1SG38	499	TXNRD1 "Thioredoxin reductase	0.624	0.669	0.307	3.7e-44
UNIPROTKB|G1K1Q2	497	TXNRD1 "Thioredoxin reductase	0.669	0.720	0.3	4.1e-43
UNIPROTKB|O62768	499	TXNRD1 "Thioredoxin reductase	0.669	0.717	0.3	4.1e-43
RGD|61959	499	Txnrd1 "thioredoxin reductase	0.629	0.675	0.313	2.3e-41
FB|FBgn0020653	596	Trxr-1 "Thioredoxin reductase-	0.614	0.552	0.315	1.7e-40
UNIPROTKB|F5H780	459	TXNRD1 "Thioredoxin reductase	0.551	0.642	0.317	5.2e-39
UNIPROTKB|G3V9V0	611	Txnrd1 "Thioredoxin reductase	0.629	0.551	0.316	6.7e-39
UNIPROTKB|E9PMY9	461	TXNRD1 "Thioredoxin reductase	0.551	0.639	0.317	2.1e-38
MGI|MGI:1354175	613	Txnrd1 "thioredoxin reductase	0.669	0.584	0.3	2.1e-38
UNIPROTKB|E1C928	604	TXNRD3 "Uncharacterized protei	0.618	0.548	0.328	2.9e-38

UNIPROTKB|F1SG38 TXNRD1 "Thioredoxin reductase 1, cytoplasmic" [Sus scrofa (taxid:9823)]

 Score = 379 (138.5 bits), Expect = 3.7e-44, Sum P(2) = 3.7e-44
 Identities = 109/355 (30%), Positives = 178/355 (50%)

Query:   153 TIRN-WNAATKLIKRFCIRAKNDSMR-ELKALGIDIVRTAAAFTNPHTIKLSNRS----- 205
             TI++ W   T+ ++   I + N   R  L+   +        F  PH IK +N       
Sbjct:    94 TIKHDWERMTEAVQNH-IGSLNWGYRVALREKKVTYENAYGQFVGPHRIKATNNKGKEKI 152

Query:   206 VTGFNFLLAV-ER-RCLPEPRNSAL-ISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNF 262
              +   FL+A  ER R L  P +    IS+DDLF L   PGKTLV+G S +A+E A  L  
Sbjct:   153 YSAEKFLIATGERPRYLGIPGDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAG 212

Query:   263 LGVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVS-----IQCCVIEKVISSFDGMKGVR 317
             +G+ VT++    LL+ FDQ+M   +   + + G       + C  +E++ +   G   V 
Sbjct:   213 IGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGCQFIRQFVPCRTVEQIEAGMPGRLRVT 272

Query:   318 GFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKS-YVVCNEKDQTSVGNIF 376
                  S E     + TV+ A+ +      + L  +GV+I +K+  +   +++QT+V  ++
Sbjct:   273 AKATNSDETIEGEYNTVLLAIGRDACTRNIGLETVGVEINEKTGKIPVTDEEQTNVPYVY 332

Query:   377 AVGGIVHGKPNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAA 436
             A+G I+ GKP    +A  + RL+ +RLYG      DY  +P  V   +E+G  G+SEE A
Sbjct:   333 AIGDILEGKPELTPVAIQAGRLLAQRLYGGSTVKCDYENVPTTVFTPLEYGACGLSEEKA 392

Query:   437 AKVYGADGLVIYKSSYPTFDNLLDPLLPEN--FVKLVC-LKGGERVLGIHVIGQN 488
              + +G + + IY S +   +  + P    N  + K+VC +K  ERV+G H++G N
Sbjct:   393 VEKFGEENIEIYHSYFWPLEWTI-PSRDNNKCYAKIVCNIKDNERVVGFHILGPN 446

GO:0008283 "cell proliferation" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=IEA

GO:0001707 "mesoderm formation" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

UNIPROTKB|G1K1Q2 TXNRD1 "Thioredoxin reductase 1, cytoplasmic" [Bos taurus (taxid:9913)]

 Score = 369 (135.0 bits), Expect = 4.1e-43, Sum P(2) = 4.1e-43
 Identities = 114/380 (30%), Positives = 190/380 (50%)

Query:   129 RRLYYPVAMSDLELEQDSTSALNV--TIRN-WNAATKLIKRFCIRAKNDSMR-ELKALGI 184
             ++L +  A+    L        NV  T+++ W   T+ ++   I + N   R  L+   +
Sbjct:    67 KKLMHQAALLGQALRDSRNYGWNVEETVKHDWERMTEAVQNH-IGSLNWGYRVALREKKV 125

Query:   185 DIVRTAAAFTNPHTIKLSNRS-----VTGFNFLLAV-ER-RCLPEPRNSAL-ISADDLFR 236
                     F  PH IK +N        +   FL+A  ER R L  P +    IS+DDLF 
Sbjct:   126 TYENAYGEFVGPHRIKATNNKGKEKIYSAERFLIATGERPRYLGIPGDKEYCISSDDLFS 185

Query:   237 LGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGV 296
             L   PGKTLV+G S +A+E A  L  +G+ VT++    LL+ FDQ+M   +   + + G+
Sbjct:   186 LPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMQEHGI 245

Query:   297 S-IQCCV---IEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHI 352
               I+  V   +E++ +   G   V     +S +     + TV+ A+ +      + L ++
Sbjct:   246 KFIRQFVPIKVEQIEAGTPGRLRVIAKSTDSDQTIEGEYNTVLLAIGRDACTRKIGLENV 305

Query:   353 GVDIKKKS-YVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQDQLM 411
             GV I +K+  +   E++QT+V  I+A+G I+ GK     +A  + RL+ +RLYG      
Sbjct:   306 GVKINEKTGKIPVTEEEQTNVPYIYAIGDILEGKLELTPVAIQAGRLLAQRLYGGSTVKC 365

Query:   412 DYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPEN--FVK 469
             DY  +P  V   +E+G+ G+SEE A + +G + + +Y S +   +  + P    N  + K
Sbjct:   366 DYENVPTTVFTPLEYGSCGLSEEKAVEKFGEENVEVYHSYFWPLEWTI-PSRDNNKCYAK 424

Query:   470 LVC-LKGGERVLGIHVIGQN 488
             +VC +K  ERV+G HV+G N
Sbjct:   425 VVCNIKDNERVVGFHVLGPN 444

GO:0050661 "NADP binding" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=IEA

UNIPROTKB|O62768 TXNRD1 "Thioredoxin reductase 1, cytoplasmic" [Bos taurus (taxid:9913)]

 Score = 369 (135.0 bits), Expect = 4.1e-43, Sum P(2) = 4.1e-43
 Identities = 114/380 (30%), Positives = 190/380 (50%)

Query:   129 RRLYYPVAMSDLELEQDSTSALNV--TIRN-WNAATKLIKRFCIRAKNDSMR-ELKALGI 184
             ++L +  A+    L        NV  T+++ W   T+ ++   I + N   R  L+   +
Sbjct:    67 KKLMHQAALLGQALRDSRNYGWNVEETVKHDWERMTEAVQNH-IGSLNWGYRVALREKKV 125

Query:   185 DIVRTAAAFTNPHTIKLSNRS-----VTGFNFLLAV-ER-RCLPEPRNSAL-ISADDLFR 236
                     F  PH IK +N        +   FL+A  ER R L  P +    IS+DDLF 
Sbjct:   126 TYENAYGEFVGPHRIKATNNKGKEKIYSAERFLIATGERPRYLGIPGDKEYCISSDDLFS 185

Query:   237 LGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGV 296
             L   PGKTLV+G S +A+E A  L  +G+ VT++    LL+ FDQ+M   +   + + G+
Sbjct:   186 LPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMQEHGI 245

Query:   297 S-IQCCV---IEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHI 352
               I+  V   +E++ +   G   V     +S +     + TV+ A+ +      + L ++
Sbjct:   246 KFIRQFVPIKVEQIEAGTPGRLRVIAKSTDSDQTIEGEYNTVLLAIGRDACTRKIGLENV 305

Query:   353 GVDIKKKS-YVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQDQLM 411
             GV I +K+  +   E++QT+V  I+A+G I+ GK     +A  + RL+ +RLYG      
Sbjct:   306 GVKINEKTGKIPVTEEEQTNVPYIYAIGDILEGKLELTPVAIQAGRLLAQRLYGGSTVKC 365

Query:   412 DYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPEN--FVK 469
             DY  +P  V   +E+G+ G+SEE A + +G + + +Y S +   +  + P    N  + K
Sbjct:   366 DYENVPTTVFTPLEYGSCGLSEEKAVEKFGEENVEVYHSYFWPLEWTI-PSRDNNKCYAK 424

Query:   470 LVC-LKGGERVLGIHVIGQN 488
             +VC +K  ERV+G HV+G N
Sbjct:   425 VVCNIKDNERVVGFHVLGPN 444

GO:0005737 "cytoplasm" evidence=IEA

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

RGD|61959 Txnrd1 "thioredoxin reductase 1" [Rattus norvegicus (taxid:10116)]

 Score = 364 (133.2 bits), Expect = 2.3e-41, Sum P(2) = 2.3e-41
 Identities = 112/357 (31%), Positives = 180/357 (50%)

Query:   150 LNVTIRN-WNAATKLIKRFCIRAKNDSMR-ELKALGIDIVRTAAAFTNPHTIKLSNRS-- 205
             L  T+++ W   T+ ++   I + N   R  L+   +        F  PH I  +N    
Sbjct:    90 LEDTVKHDWEKMTESVQNH-IGSLNWGYRVALREKKVVYENAYGKFIGPHKIMATNNKGK 148

Query:   206 ---VTGFNFLLAV-ER-RCLPEPRNSAL-ISADDLFRLGAWPGKTLVLGGSLMAVEIAAT 259
                 +   FL+A  ER R L  P +    IS+DDLF L   PGKTLV+G S +A+E A  
Sbjct:   149 EKVYSAERFLIATGERPRYLGIPGDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGF 208

Query:   260 LNFLGVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVS-IQCCV---IEKVISSFDGMKG 315
             L  +G+ VT++    LL+ FDQ+M   +   + + G+  I+  V   IE++ +   G   
Sbjct:   209 LAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPTKIEQIEAGTPGRLK 268

Query:   316 VRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKS-YVVCNEKDQTSVGN 374
             V      S+E   D F TV+ A+ +      + L  +GV I +K+  +   +++QT+V  
Sbjct:   269 VTAKSTNSEETIEDEFNTVLLAVGRDSCTRTIGLETVGVKINEKTGKIPVTDEEQTNVPY 328

Query:   375 IFAVGGIVHGKPNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEE 434
             I+A+G I+ GK     +A  + RL+ +RLYG      DY  +P  V   +E+G  G+SEE
Sbjct:   329 IYAIGDILEGKLELTPVAIQAGRLLAQRLYGGSTVKCDYDNVPTTVFTPLEYGCCGLSEE 388

Query:   435 AAAKVYGADGLVIYKSSYPTFDNLLDPLLPEN--FVKLVC-LKGGERVLGIHVIGQN 488
              A + +G + + +Y S +   +  + P    N  + K++C LK  ERV+G HV+G N
Sbjct:   389 KAVEKFGEENIEVYHSFFWPLEWTV-PSRDNNKCYAKVICNLKDNERVVGFHVLGPN 444

GO:0001707 "mesoderm formation" evidence=IEA;ISO

GO:0001890 "placenta development" evidence=IEP

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=ISO;IDA

GO:0005634 "nucleus" evidence=ISO

GO:0005730 "nucleolus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO;IDA

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0005829 "cytosol" evidence=ISO;IDA

GO:0006749 "glutathione metabolic process" evidence=IEP

GO:0006790 "sulfur compound metabolic process" evidence=IEP

GO:0006979 "response to oxidative stress" evidence=IDA

GO:0007369 "gastrulation" evidence=ISO

GO:0008283 "cell proliferation" evidence=IEA;ISO

GO:0010269 "response to selenium ion" evidence=IEP

GO:0010942 "positive regulation of cell death" evidence=IMP

GO:0016174 "NAD(P)H oxidase activity" evidence=IDA

GO:0016259 "selenocysteine metabolic process" evidence=IMP

GO:0033797 "selenate reductase activity" evidence=IDA

GO:0042191 "methylmercury metabolic process" evidence=IEP

GO:0042493 "response to drug" evidence=IEP

GO:0042537 "benzene-containing compound metabolic process" evidence=IDA

GO:0042744 "hydrogen peroxide catabolic process" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0043025 "neuronal cell body" evidence=IDA

GO:0045340 "mercury ion binding" evidence=IDA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0048678 "response to axon injury" evidence=IEP

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0051262 "protein tetramerization" evidence=IDA

GO:0055093 "response to hyperoxia" evidence=IEP

GO:0055114 "oxidation-reduction process" evidence=ISO

GO:0070276 "halogen metabolic process" evidence=IEP

GO:0070995 "NADPH oxidation" evidence=IDA

GO:0071280 "cellular response to copper ion" evidence=IEP

GO:0071455 "cellular response to hyperoxia" evidence=IEP

FB|FBgn0020653 Trxr-1 "Thioredoxin reductase-1" [Drosophila melanogaster (taxid:7227)]

 Score = 389 (142.0 bits), Expect = 1.7e-40, Sum P(2) = 1.7e-40
 Identities = 108/342 (31%), Positives = 183/342 (53%)

Query:   156 NWNAATKLIKRFCIRAKNDSMR-ELKALGIDIVRTAAAFTNPHTI----KLSNRSVTGFN 210
             +W+   + ++   I++ N   R +L+   ++ +    +F + HT+    K   R++T   
Sbjct:   200 DWHKLVQSVQNH-IKSVNWVTRVDLRDKKVEYINGLGSFVDSHTLLAKLKSGERTITAQT 258

Query:   211 FLLAVERRC-LPEPRNSAL--ISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPV 267
             F++AV  R   P+   +    I++DDLF L   PGKTLV+G   + +E A  L  LG   
Sbjct:   259 FVIAVGGRPRYPDIPGAVEYGITSDDLFSLDREPGKTLVVGAGYIGLECAGFLKGLGYEP 318

Query:   268 TLVYSRRLLKHFDQEMVRILLSSLTKAGVS-IQCCVIEKVISSFDGMKGVRGFHPESKEP 326
             T++    +L+ FDQ+M  ++ +S+ + G+  ++  V   V    DG   V+  + E+ E 
Sbjct:   319 TVMVRSIVLRGFDQQMAELVAASMEERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEE 378

Query:   327 FADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKP 386
               DV+ TV+ A+ +K     LNL + GV ++K    V + ++ T+V NI+AVG I++GKP
Sbjct:   379 AEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQKDKIPV-DSQEATNVANIYAVGDIIYGKP 437

Query:   387 NNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLV 446
                 +A ++ RL+  RLYG   Q MDY  +   V   +E+  VG+SEE A K +GAD + 
Sbjct:   438 ELTPVAVLAGRLLARRLYGGSTQRMDYKDVATTVFTPLEYACVGLSEEDAVKQFGADEIE 497

Query:   447 IYKSSY-PTFDNLLDPLLPENFVKLVCLK-GGERVLGIHVIG 486
             ++   Y PT   +    +   ++K V  + G +RV G+H IG
Sbjct:   498 VFHGYYKPTEFFIPQKSVRYCYLKAVAERHGDQRVYGLHYIG 539

GO:0001666 "response to hypoxia" evidence=IMP

GO:0004362 "glutathione-disulfide reductase activity" evidence=IDA;NAS;IMP

GO:0008340 "determination of adult lifespan" evidence=IMP;TAS

GO:0005737 "cytoplasm" evidence=IDA;NAS

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=ISS;IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0045454 "cell redox homeostasis" evidence=IEA;IC

GO:0005739 "mitochondrion" evidence=IDA

GO:0016209 "antioxidant activity" evidence=NAS;IDA

GO:0050661 "NADP binding" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0006974 "response to DNA damage stimulus" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|F5H780 TXNRD1 "Thioredoxin reductase 1, cytoplasmic" [Homo sapiens (taxid:9606)]

 Score = 338 (124.0 bits), Expect = 5.2e-39, Sum P(2) = 5.2e-39
 Identities = 99/312 (31%), Positives = 160/312 (51%)

Query:   193 FTNPHTIKLSNRS-----VTGFNFLLAV-ER-RCLPEPRNSAL-ISADDLFRLGAWPGKT 244
             F  PH IK +N        +   FL+A  ER R L  P +    IS+DDLF L   PGKT
Sbjct:    96 FIGPHRIKATNNKGKEKIYSAERFLIATGERPRYLGIPGDKEYCISSDDLFSLPYCPGKT 155

Query:   245 LVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVS-IQCCV- 302
             LV+G S +A+E A  L  +G+ VT++    LL+ FDQ+M   +   + + G+  I+  V 
Sbjct:   156 LVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQFVP 215

Query:   303 --IEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKS 360
               +E++ +   G   V      S+E     + TV+ A+ +      + L  +GV I +K+
Sbjct:   216 IKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKT 275

Query:   361 -YVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQDQLMDYSFLPVV 419
               +   +++QT+V  I+A+G I+  K     +A  + RL+ +RLY       DY  +P  
Sbjct:   276 GKIPVTDEEQTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAGSTVKCDYENVPTT 335

Query:   420 VRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPEN--FVKLVC-LKGG 476
             V   +E+G  G+SEE A + +G + + +Y S +   +  + P    N  + K++C  K  
Sbjct:   336 VFTPLEYGACGLSEEKAVEKFGEENIEVYHSYFWPLEWTI-PSRDNNKCYAKIICNTKDN 394

Query:   477 ERVLGIHVIGQN 488
             ERV+G HV+G N
Sbjct:   395 ERVVGFHVLGPN 406

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0001707 "mesoderm formation" evidence=IEA

GO:0001890 "placenta development" evidence=IEA

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0006749 "glutathione metabolic process" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0010269 "response to selenium ion" evidence=IEA

GO:0010942 "positive regulation of cell death" evidence=IEA

GO:0016174 "NAD(P)H oxidase activity" evidence=IEA

GO:0016259 "selenocysteine metabolic process" evidence=IEA

GO:0033797 "selenate reductase activity" evidence=IEA

GO:0042191 "methylmercury metabolic process" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0042537 "benzene-containing compound metabolic process" evidence=IEA

GO:0042744 "hydrogen peroxide catabolic process" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0043025 "neuronal cell body" evidence=IEA

GO:0045340 "mercury ion binding" evidence=IEA

GO:0048678 "response to axon injury" evidence=IEA

GO:0051262 "protein tetramerization" evidence=IEA

GO:0070276 "halogen metabolic process" evidence=IEA

GO:0070995 "NADPH oxidation" evidence=IEA

GO:0071280 "cellular response to copper ion" evidence=IEA

GO:0071455 "cellular response to hyperoxia" evidence=IEA

UNIPROTKB|G3V9V0 Txnrd1 "Thioredoxin reductase 1, isoform CRA_a" [Rattus norvegicus (taxid:10116)]

 Score = 365 (133.5 bits), Expect = 6.7e-39, Sum P(2) = 6.7e-39
 Identities = 113/357 (31%), Positives = 180/357 (50%)

Query:   150 LNVTIRN-WNAATKLIKRFCIRAKNDSMR-ELKALGIDIVRTAAAFTNPHTIKLSNRS-- 205
             L  T+++ W   T+ ++   I + N   R  L+   +        F  PH I  +N    
Sbjct:   204 LEDTVKHDWEKMTESVQNH-IGSLNWGYRVALREKKVVYENAYGKFIGPHKIMATNNKGK 262

Query:   206 ---VTGFNFLLAV-ER-RCLPEPRNSAL-ISADDLFRLGAWPGKTLVLGGSLMAVEIAAT 259
                 +   FL+A  ER R L  P +    IS+DDLF L   PGKTLV+G S +A+E A  
Sbjct:   263 EKVYSAERFLIATGERPRYLGIPGDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGF 322

Query:   260 LNFLGVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVS-IQCCV---IEKVISSFDGMKG 315
             L  +G+ VT++    LL+ FDQ+M   +   + + G+  I+  V   IE++ +   G   
Sbjct:   323 LAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPTKIEQIEAGTPGRLK 382

Query:   316 VRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKS-YVVCNEKDQTSVGN 374
             V      S+E   D F TV+ A+ +      + L  +GV I +K+  +   +++QT+V  
Sbjct:   383 VTAKSTNSEETIEDEFNTVLLAVGRDSCTRTIGLETVGVKINEKTGKIPVTDEEQTNVPY 442

Query:   375 IFAVGGIVHGKPNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEE 434
             I+A+G I+ GK     +A  + RL+ +RLYG      DY  +P  V   +E+G  G+SEE
Sbjct:   443 IYAIGDILEGKLELTPVAIQAGRLLAQRLYGGSTVKCDYDNVPTTVFTPLEYGCCGLSEE 502

Query:   435 AAAKVYGADGLVIYKSSYPTFDNLLDPLLPEN--FVKLVC-LKGGERVLGIHVIGQN 488
              A + +G + + +Y S +   +  + P    N  + K+VC LK  ERV+G HV+G N
Sbjct:   503 KAVEKFGEENIEVYHSFFWPLEWTV-PSRDNNKCYAKVVCNLKDNERVVGFHVLGPN 558

GO:0001707 "mesoderm formation" evidence=IEA

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

UNIPROTKB|E9PMY9 TXNRD1 "Thioredoxin reductase 1, cytoplasmic" [Homo sapiens (taxid:9606)]

 Score = 338 (124.0 bits), Expect = 2.1e-38, Sum P(2) = 2.1e-38
 Identities = 99/312 (31%), Positives = 160/312 (51%)

Query:   193 FTNPHTIKLSNRS-----VTGFNFLLAV-ER-RCLPEPRNSAL-ISADDLFRLGAWPGKT 244
             F  PH IK +N        +   FL+A  ER R L  P +    IS+DDLF L   PGKT
Sbjct:    96 FIGPHRIKATNNKGKEKIYSAERFLIATGERPRYLGIPGDKEYCISSDDLFSLPYCPGKT 155

Query:   245 LVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVS-IQCCV- 302
             LV+G S +A+E A  L  +G+ VT++    LL+ FDQ+M   +   + + G+  I+  V 
Sbjct:   156 LVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQFVP 215

Query:   303 --IEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKS 360
               +E++ +   G   V      S+E     + TV+ A+ +      + L  +GV I +K+
Sbjct:   216 IKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKT 275

Query:   361 -YVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQDQLMDYSFLPVV 419
               +   +++QT+V  I+A+G I+  K     +A  + RL+ +RLY       DY  +P  
Sbjct:   276 GKIPVTDEEQTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAGSTVKCDYENVPTT 335

Query:   420 VRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPEN--FVKLVC-LKGG 476
             V   +E+G  G+SEE A + +G + + +Y S +   +  + P    N  + K++C  K  
Sbjct:   336 VFTPLEYGACGLSEEKAVEKFGEENIEVYHSYFWPLEWTI-PSRDNNKCYAKIICNTKDN 394

Query:   477 ERVLGIHVIGQN 488
             ERV+G HV+G N
Sbjct:   395 ERVVGFHVLGPN 406

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

MGI|MGI:1354175 Txnrd1 "thioredoxin reductase 1" [Mus musculus (taxid:10090)]

 Score = 357 (130.7 bits), Expect = 2.1e-38, Sum P(3) = 2.1e-38
 Identities = 114/380 (30%), Positives = 188/380 (49%)

Query:   129 RRLYYPVAMSDLELEQDSTSALNV--TIRN-WNAATKLIKRFCIRAKNDSMR-ELKALGI 184
             ++L +  A+    L+        V  T+++ W   T+ ++   I + N   R  L+   +
Sbjct:   181 KKLMHQAALLGQALKDSRNYGWKVEDTVKHDWEKMTESVQSH-IGSLNWGYRVALREKKV 239

Query:   185 DIVRTAAAFTNPHTIKLSNRS-----VTGFNFLLAV-ER-RCLPEPRNSAL-ISADDLFR 236
                     F  PH I  +N        +   FL+A  ER R L  P +    IS+DDLF 
Sbjct:   240 VYENAYGRFIGPHRIVATNNKGKEKIYSAERFLIATGERPRYLGIPGDKEYCISSDDLFS 299

Query:   237 LGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGV 296
             L   PGKTLV+G S +A+E A  L  +G+ VT++    LL+ FDQ+M   +   + + G+
Sbjct:   300 LPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGI 359

Query:   297 S-IQCCV---IEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHI 352
               I+  V   IE++ +   G   V      S+E     F TV+ A+ +      + L  +
Sbjct:   360 KFIRQFVPTKIEQIEAGTPGRLRVTAQSTNSEETIEGEFNTVLLAVGRDSCTRTIGLETV 419

Query:   353 GVDIKKKS-YVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQDQLM 411
             GV I +K+  +   +++QT+V  I+A+G I+ GK     +A  + RL+ +RLYG  +   
Sbjct:   420 GVKINEKTGKIPVTDEEQTNVPYIYAIGDILEGKLELTPVAIQAGRLLAQRLYGGSNVKC 479

Query:   412 DYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPEN--FVK 469
             DY  +P  V   +E+G  G+SEE A + +G + + +Y S +   +  + P    N  + K
Sbjct:   480 DYDNVPTTVFTPLEYGCCGLSEEKAVEKFGEENIEVYHSFFWPLEWTV-PSRDNNKCYAK 538

Query:   470 LVC-LKGGERVLGIHVIGQN 488
             ++C LK  ERV+G HV+G N
Sbjct:   539 IICNLKDDERVVGFHVLGPN 558

GO:0001707 "mesoderm formation" evidence=IMP

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=ISO;IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=ISO;IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005829 "cytosol" evidence=ISO;IDA

GO:0006979 "response to oxidative stress" evidence=ISO

GO:0007369 "gastrulation" evidence=IMP

GO:0008283 "cell proliferation" evidence=IMP

GO:0010942 "positive regulation of cell death" evidence=ISO

GO:0016174 "NAD(P)H oxidase activity" evidence=ISO

GO:0016259 "selenocysteine metabolic process" evidence=ISO

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016668 "oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor" evidence=IEA

GO:0033797 "selenate reductase activity" evidence=ISO

GO:0042537 "benzene-containing compound metabolic process" evidence=ISO

GO:0042744 "hydrogen peroxide catabolic process" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0043025 "neuronal cell body" evidence=ISO

GO:0045340 "mercury ion binding" evidence=ISO

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0051262 "protein tetramerization" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=IDA

GO:0070995 "NADPH oxidation" evidence=ISO

UNIPROTKB|E1C928 TXNRD3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 370 (135.3 bits), Expect = 2.9e-38, Sum P(2) = 2.9e-38
 Identities = 115/350 (32%), Positives = 177/350 (50%)

Query:   156 NWNAATKLIKRFCIRAKNDSMR-ELKALGIDIVRTAAAFTNPHTIKLSNRSV-----TGF 209
             NW    + ++ + I + N   R  L+   +    +   F  PH IK +NR       T  
Sbjct:   204 NWEIMVEAVQNY-IGSLNWGYRLSLREKSVTYQNSYGEFVEPHKIKATNRKGQVTYHTAE 262

Query:   210 NFLLAV-ER-RCLPEPRNSAL-ISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVP 266
              F+LA  ER R L  P +    I++DDLF L   PGKTLV+G S +A+E A  L  LG+ 
Sbjct:   263 TFVLATGERPRYLGIPGDKEYCITSDDLFSLPYCPGKTLVVGASYVALECAGFLAGLGLD 322

Query:   267 VTLVYSRRLLKHFDQEMVRILLSSLTKAGVS-IQCCVIEKVISSFDGMKG---VRGFHPE 322
             VT++    LL+ FDQEM   + + +   GV+ I+  V  +V    DG  G   V     E
Sbjct:   323 VTVMVRSILLRGFDQEMAEKIGAHMETHGVTFIRKFVPTQVERLEDGTPGRLKVTAKSTE 382

Query:   323 SKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKS-YVVCNEKDQTSVGNIFAVGGI 381
               E F   + TV+ A+ +      + L  IGV I +K+  V  N++++T+V  ++A+G I
Sbjct:   383 GPEFFEGEYNTVLIAIGRDACTRNIGLQTIGVKINEKNGKVPVNDEERTNVPYVYAIGDI 442

Query:   382 VHGKPNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYG 441
             + GK     +A  + +L+  RLYG      DY  +P  V   +E+G+ G++EE A + YG
Sbjct:   443 LDGKLELTPVAIQAGKLLARRLYGGSSTKCDYINVPTTVFTPLEYGSCGLAEEKAIEEYG 502

Query:   442 ADGLVIYKSSYPTFDNLLDPLLPEN--FVKLVCLK-GGERVLGIHVIGQN 488
                L +Y S +   +  + P    N  + K++C K  G RV+G HV+G N
Sbjct:   503 KQNLEVYHSLFWPLEWTV-PGRDNNTCYAKIICNKLDGNRVVGFHVLGPN 551

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	535
TIGR01438	484	TIGR01438, TGR, thioredoxin and glutathione reduct	2e-50
PRK06116	450	PRK06116, PRK06116, glutathione reductase; Validat	6e-49
PTZ00052	499	PTZ00052, PTZ00052, thioredoxin reductase; Provisi	2e-43
TIGR01421	450	TIGR01421, gluta_reduc_1, glutathione-disulfide re	2e-38
COG1249	454	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenas	8e-36
TIGR01424	446	TIGR01424, gluta_reduc_2, glutathione-disulfide re	5e-31
TIGR02053	463	TIGR02053, MerA, mercuric reductase	6e-26
PTZ00058	561	PTZ00058, PTZ00058, glutathione reductase; Provisi	5e-24
PLN02546	558	PLN02546, PLN02546, glutathione reductase	6e-22
TIGR01350	460	TIGR01350, lipoamide_DH, dihydrolipoamide dehydrog	2e-21
PLN02507	499	PLN02507, PLN02507, glutathione reductase	2e-20
PRK06292	460	PRK06292, PRK06292, dihydrolipoamide dehydrogenase	2e-19
PRK06416	462	PRK06416, PRK06416, dihydrolipoamide dehydrogenase	2e-18
PRK06370	463	PRK06370, PRK06370, mercuric reductase; Validated	2e-17
PRK05976	472	PRK05976, PRK05976, dihydrolipoamide dehydrogenase	7e-17
TIGR01423	486	TIGR01423, trypano_reduc, trypanothione-disulfide	1e-14
PRK07846	451	PRK07846, PRK07846, mycothione reductase; Reviewed	4e-14
PRK06327	475	PRK06327, PRK06327, dihydrolipoamide dehydrogenase	3e-13
pfam07992	283	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp	3e-13
TIGR03452	452	TIGR03452, mycothione_red, mycothione reductase	5e-12
PRK06115	466	PRK06115, PRK06115, dihydrolipoamide dehydrogenase	1e-11
PRK14727	479	PRK14727, PRK14727, putative mercuric reductase; P	3e-10
PRK05249	461	PRK05249, PRK05249, soluble pyridine nucleotide tr	3e-10
pfam02852	110	pfam02852, Pyr_redox_dim, Pyridine nucleotide-disu	6e-10
PRK06467	471	PRK06467, PRK06467, dihydrolipoamide dehydrogenase	1e-09
PRK14694	468	PRK14694, PRK14694, putative mercuric reductase; P	5e-09
PRK06912	458	PRK06912, acoL, dihydrolipoamide dehydrogenase; Va	7e-09
TIGR03385	427	TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase	8e-09
PRK09564	444	PRK09564, PRK09564, coenzyme A disulfide reductase	1e-08
pfam00070	82	pfam00070, Pyr_redox, Pyridine nucleotide-disulphi	2e-07
PRK13748	561	PRK13748, PRK13748, putative mercuric reductase; P	1e-06
PRK13512	438	PRK13512, PRK13512, coenzyme A disulfide reductase	3e-05
PRK08010	441	PRK08010, PRK08010, pyridine nucleotide-disulfide	3e-05
PRK07251	438	PRK07251, PRK07251, pyridine nucleotide-disulfide	6e-05
PRK07818	466	PRK07818, PRK07818, dihydrolipoamide dehydrogenase	4e-04
COG0446	415	COG0446, HcaD, Uncharacterized NAD(FAD)-dependent	0.001
COG0493	457	COG0493, GltD, NADPH-dependent glutamate synthase	0.001
PRK12770	352	PRK12770, PRK12770, putative glutamate synthase su	0.002
COG0492	305	COG0492, TrxB, Thioredoxin reductase [Posttranslat	0.003

>gnl|CDD|233412 TIGR01438, TGR, thioredoxin and glutathione reductase selenoprotein

 Score =  180 bits (457), Expect = 2e-50
 Identities = 115/391 (29%), Positives = 187/391 (47%), Gaps = 35/391 (8%)

Query: 156 NWNAATKLIKRFCIRAKNDSMR-ELKALGIDIVRTAAAFTNPHTIKLSNRS-----VTGF 209
           +W    + ++   I + N   R  L+   +      A F + H IK +N+       +  
Sbjct: 87  DWKRLVEAVQNH-IGSLNWGYRVALREKKVKYENAYAEFVDKHRIKATNKKGKEKIYSAE 145

Query: 210 NFLLAV-ERRCLPE-PRNSAL-ISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVP 266
            FL+A  ER   P  P    L I++DDLF L   PGKTLV+G S +A+E A  L  +G+ 
Sbjct: 146 RFLIATGERPRYPGIPGAKELCITSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLD 205

Query: 267 VTLVYSRRLLKHFDQEMVRILLSSLTKAGVSIQCCVIEKVISSFDGMKGVRGFHPESKEP 326
           VT++    LL+ FDQ+    +   + + GV  +   +   +   +    V     +S   
Sbjct: 206 VTVMVRSILLRGFDQDCANKVGEHMEEHGVKFKRQFVPIKVEQIEAKVLVE--FTDSTNG 263

Query: 327 FADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKS-YVVCNEKDQTSVGNIFAVGGIVHGK 385
             + + TV+ A+ +      LNL ++GV I KK+  +  +E++QT+V  I+AVG I+  K
Sbjct: 264 IEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGKIPADEEEQTNVPYIYAVGDILEDK 323

Query: 386 PNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGL 445
           P    +A  + RL+ +RL+     + DY  +P  V   +E+G  G+SEE A + +G + +
Sbjct: 324 PELTPVAIQAGRLLAQRLFKGSTVICDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENV 383

Query: 446 VIYKSSYPTFDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKG-GERVLG 504
            ++ S +      L+  +P       C                 + KLVC K   ERV+G
Sbjct: 384 EVFHSYF----WPLEWTIPSRDNHNKC-----------------YAKLVCNKKENERVVG 422

Query: 505 IHVIGQNVAGMIFGYSLALRKFLTKAELDGT 535
            HV+G N   +  G++ ALR  LTK +LD T
Sbjct: 423 FHVVGPNAGEVTQGFAAALRCGLTKKDLDNT 453

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity. Length = 484

>gnl|CDD|235701 PRK06116, PRK06116, glutathione reductase; Validated

 Score =  174 bits (445), Expect = 6e-49
 Identities = 104/359 (28%), Positives = 173/359 (48%), Gaps = 36/359 (10%)

Query: 183 GIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAV-ERRCLPE-PRNSALISADDLFRLGAW 240
           G+D++   A F + HT++++    T  + L+A   R  +P+ P     I++D  F L   
Sbjct: 107 GVDLIEGFARFVDAHTVEVNGERYTADHILIATGGRPSIPDIPGAEYGITSDGFFALEEL 166

Query: 241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSR-RLLKHFDQEMVRILLSSLTKAGVSIQ 299
           P +  V+G   +AVE A  LN LG    L       L+ FD ++   L+  + K G+ + 
Sbjct: 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRGFDPDIRETLVEEMEKKGIRLH 226

Query: 300 C-CVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKK 358
              V + V  + DG   +     E+     D    ++ A+ ++ +   L L + GV + +
Sbjct: 227 TNAVPKAVEKNADGSLTLTLEDGETLT--VD---CLIWAIGREPNTDGLGLENAGVKLNE 281

Query: 359 KSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLY-GMQDQLMDYSFLP 417
           K Y++ +E   T+V  I+AVG  V G+     +A  + R + ERL+    D+ +DYS +P
Sbjct: 282 KGYIIVDEYQNTNVPGIYAVGD-VTGRVELTPVAIAAGRRLSERLFNNKPDEKLDYSNIP 340

Query: 418 VVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSY-PTFDNLLDPLLPENFVKLVCLKGG 476
            VV      GTVG++EE A + YG D + +Y+SS+ P +  L                 G
Sbjct: 341 TVVFSHPPIGTVGLTEEEAREQYGEDNVKVYRSSFTPMYTAL----------------TG 384

Query: 477 ERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT 535
            R        Q   +KLV +   E+V+G+H IG     MI G+++A++   TKA+ D T
Sbjct: 385 HR--------QPCLMKLVVVGKEEKVVGLHGIGFGADEMIQGFAVAIKMGATKADFDNT 435

Length = 450

>gnl|CDD|185416 PTZ00052, PTZ00052, thioredoxin reductase; Provisional

 Score =  160 bits (407), Expect = 2e-43
 Identities = 109/375 (29%), Positives = 179/375 (47%), Gaps = 24/375 (6%)

Query: 169 IRAKNDSMRE-LKALGIDIVRTAAAFTNPHTIKLSNRS----VTGFNFLLAVE-RRCLPE 222
           IR+ N S R  L++  ++ +   A   + HT+   + S    +T    L+A   R  +PE
Sbjct: 101 IRSLNFSYRTGLRSSKVEYINGLAKLKDEHTVSYGDNSQEETITAKYILIATGGRPSIPE 160

Query: 223 PRNSAL---ISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHF 279
               A    I++DD+F L   PGKTL++G S + +E A  LN LG  VT+      L+ F
Sbjct: 161 DVPGAKEYSITSDDIFSLSKDPGKTLIVGASYIGLETAGFLNELGFDVTVAVRSIPLRGF 220

Query: 280 DQEMVRILLSSLTKAGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAME 339
           D++    ++  + + G      V+   I   D    V        +   ++F TV+ A  
Sbjct: 221 DRQCSEKVVEYMKEQGTLFLEGVVPINIEKMDDKIKV-----LFSDGTTELFDTVLYATG 275

Query: 340 KKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLI 399
           +K D   LNL+ IGV + K + ++    D T++ NIFAVG +V G+P    +A  +  L+
Sbjct: 276 RKPDIKGLNLNAIGVHVNKSNKIIA-PNDCTNIPNIFAVGDVVEGRPELTPVAIKAGILL 334

Query: 400 IERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLL 459
             RL+   ++ +DY+F+P  +   +E+G  G S EAA   YG D +  Y   + T +   
Sbjct: 335 ARRLFKQSNEFIDYTFIPTTIFTPIEYGACGYSSEAAIAKYGEDDIEEYLQEFNTLE--- 391

Query: 460 DPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKG-GERVLGIHVIGQNVAGMIFG 518
             +   +  K    +  E       +  N   KLVC+K    +V+G H +G N   +  G
Sbjct: 392 --IAAVHREKHERARKDE---YDFDVSSNCLAKLVCVKSEDNKVVGFHFVGPNAGEITQG 446

Query: 519 YSLALRKFLTKAELD 533
           +SLAL+    K++ D
Sbjct: 447 FSLALKLGAKKSDFD 461

Length = 499

>gnl|CDD|130488 TIGR01421, gluta_reduc_1, glutathione-disulfide reductase, animal/bacterial

 Score =  146 bits (369), Expect = 2e-38
 Identities = 97/365 (26%), Positives = 176/365 (48%), Gaps = 34/365 (9%)

Query: 177 RELKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAV-ERRCLPE--PRNSALISADD 233
           + L+   +D++   A FT   T++++ R  T  + L+A   +   PE  P       +D 
Sbjct: 99  KNLEKNKVDVIFGHARFTKDGTVEVNGRDYTAPHILIATGGKPSFPENIPGAELGTDSDG 158

Query: 234 LFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSR-RLLKHFDQEMVRILLSSLT 292
            F L   P + +++G   +AVE+A  L+ LG    LV    R+L+ FD  +   +     
Sbjct: 159 FFALEELPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRSFDSMISETITEEYE 218

Query: 293 KAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHH 351
           K G+++ +     KV  + +G   +   H E  +   DV   ++ A+ +K +   L L +
Sbjct: 219 KEGINVHKLSKPVKVEKTVEGKLVI---HFEDGKSIDDV-DELIWAIGRKPNTKGLGLEN 274

Query: 352 IGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQ-DQL 410
           +G+ + +K  ++ +E   T+V  I+A+G +V GK     +A  + R + ERL+  + D  
Sbjct: 275 VGIKLNEKGQIIVDEYQNTNVPGIYALGDVV-GKVELTPVAIAAGRKLSERLFNGKTDDK 333

Query: 411 MDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKL 470
           +DY+ +P VV      GT+G++E+ A + YG + + +Y SS+              +  +
Sbjct: 334 LDYNNVPTVVFSHPPIGTIGLTEKEAIEKYGKENIKVYNSSFTPM-----------YYAM 382

Query: 471 VCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKA 530
              K            Q   +KLVC    E+V+G+H IG  V  M+ G+++A++   TKA
Sbjct: 383 TSEK------------QKCRMKLVCAGKEEKVVGLHGIGDGVDEMLQGFAVAIKMGATKA 430

Query: 531 ELDGT 535
           + D T
Sbjct: 431 DFDNT 435

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria [Energy metabolism, Electron transport]. Length = 450

>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

 Score =  138 bits (351), Expect = 8e-36
 Identities = 95/365 (26%), Positives = 159/365 (43%), Gaps = 37/365 (10%)

Query: 179 LKALGIDIVRTAAAFTNPHTIKL---SNRSVTGFNFLLAVERR----CLPEPRNSALISA 231
           LK  G+D++R  A F +PHT+++      ++T  N ++A   R      P    + ++ +
Sbjct: 104 LKKNGVDVIRGEARFVDPHTVEVTGEDKETITADNIIIATGSRPRIPPGPGIDGARILDS 163

Query: 232 DDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSR-RLLKHFDQEMVRILLSS 290
            D   L   P   +++GG  + +E A+    LG  VT+V    R+L   D E+ + L   
Sbjct: 164 SDALFLLELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPGEDPEISKELTKQ 223

Query: 291 LTKAGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLH 350
           L K GV I        +   D    V     E     AD    V+ A+ +K +   L L 
Sbjct: 224 LEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADA---VLVAIGRKPNTDGLGLE 280

Query: 351 HIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQDQL 410
           + GV++  + ++  +++  T+V  I+A+G ++ G P  A +A    R+  E + G +   
Sbjct: 281 NAGVELDDRGFIKVDDQMTTNVPGIYAIGDVI-GGPMLAHVAMAEGRIAAENIAGGKRTP 339

Query: 411 MDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKL 470
           +DY  +P VV  D E  +VG++EE A +             +P   N             
Sbjct: 340 IDYRLIPSVVFTDPEIASVGLTEEEAKEAGID----YKVGKFPFAAN------------- 382

Query: 471 VCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKA 530
               G    +G    G   FVKLV  K   R+LG H++G   + +I   +LA+    T  
Sbjct: 383 ----GRAITMG-ETDG---FVKLVVDKETGRILGAHIVGPGASELINEIALAIEMGATAE 434

Query: 531 ELDGT 535
           +L  T
Sbjct: 435 DLALT 439

Length = 454

>gnl|CDD|213618 TIGR01424, gluta_reduc_2, glutathione-disulfide reductase, plant

 Score =  124 bits (314), Expect = 5e-31
 Identities = 102/382 (26%), Positives = 161/382 (42%), Gaps = 47/382 (12%)

Query: 169 IRAKNDSMRELKAL--------GIDIVRTAAAFTNPHTIKL--SNRSVTGFNFLLAVERR 218
           + AK+  +  L  L        G +++   A    P+T+++  S ++ T    L+AV  R
Sbjct: 82  LAAKDQEIARLSGLYRKGLANAGAELLDGRAELVGPNTVEVLASGKTYTAEKILIAVGGR 141

Query: 219 CL-PE-PRNSALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVY-SRRL 275
              P  P +   I++++ F L   P   L+ GG  +AVE A     LGV  TL+Y  + +
Sbjct: 142 PPKPALPGHELGITSNEAFHLPTLPKSILIAGGGYIAVEFAGIFRGLGVQTTLIYRGKEI 201

Query: 276 LKHFDQEMVRILLSSLTKAGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPF-ADVFKTV 334
           L+ FD +M R L ++L + G+ I        IS  D   G         E   ADV   V
Sbjct: 202 LRGFDDDMRRGLAAALEERGIRILPEDSITSISKDD--DGRLKATLSKHEEIVADV---V 256

Query: 335 VNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAI 394
           + A  +  +   L L   GV +     +  +E  +TS  +I+AVG  V  + N   +A  
Sbjct: 257 LFATGRSPNTNGLGLEAAGVRLNDLGAIAVDEYSRTSTPSIYAVGD-VTDRINLTPVAIH 315

Query: 395 SARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPT 454
            A    E  +G      D+  +   V      GTVG++EE A + +G D  V      P 
Sbjct: 316 EATCFAETEFGNNPTSFDHDLIATAVFSQPPIGTVGLTEEEARRKFG-DIEVYRAEFRPM 374

Query: 455 FDNLLDPLLPENFVKLVCLKGG-ERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVA 513
                               G  E+ L          +KLV     ++VLG H++G + A
Sbjct: 375 K---------------ATFSGRQEKTL----------MKLVVDAKDDKVLGAHMVGPDAA 409

Query: 514 GMIFGYSLALRKFLTKAELDGT 535
            +I G ++AL+   TK + D T
Sbjct: 410 EIIQGLAIALKMGATKDDFDST 431

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria [Energy metabolism, Electron transport]. Length = 446

>gnl|CDD|233700 TIGR02053, MerA, mercuric reductase

 Score =  110 bits (277), Expect = 6e-26
 Identities = 86/362 (23%), Positives = 152/362 (41%), Gaps = 37/362 (10%)

Query: 179 LKALGIDIVRTAAAFTNPHTIKLS-NRSVTGFN-FLLAVERRC----LPEPRNSALISAD 232
           L + G+D +R  A F +P T+K+   R V G   FL+A   R     +P  + +  ++++
Sbjct: 98  LSSYGVDYLRGRARFKDPKTVKVDLGREVRGAKRFLIATGARPAIPPIPGLKEAGYLTSE 157

Query: 233 DLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVY-SRRLLKHFDQEMVRILLSSL 291
           +   L   P    V+GG  + VE+A     LG  VT++  S RLL   + E+   +  +L
Sbjct: 158 EALALDRIPESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPREEPEISAAVEEAL 217

Query: 292 TKAGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHH 351
            + G+ +      K +S   G K +        +   +  + +V A  ++ +   L L  
Sbjct: 218 AEEGIEVVTSAQVKAVSVRGGGKIIT-VEKPGGQGEVEADELLV-ATGRRPNTDGLGLEK 275

Query: 352 IGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQDQLM 411
            GV + ++  ++ +E  +TS   I+A G +  G      +AA    +  E   G  +  +
Sbjct: 276 AGVKLDERGGILVDETLRTSNPGIYAAGDVT-GGLQLEYVAAKEGVVAAENALGGANAKL 334

Query: 412 DYSFLPVVVRGDVEFGTVGMSE-EAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKL 470
           D   +P VV  D    +VG++E EA       D   +  ++ P                 
Sbjct: 335 DLLVIPRVVFTDPAVASVGLTEAEAQKAGIECDCRTLPLTNVPR---------------- 378

Query: 471 VCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKA 530
                  R+          F+KLV   G  +VLG+ V+    A +I   +LA+R  +T  
Sbjct: 379 ------ARINR----DTRGFIKLVAEPGTGKVLGVQVVAPEAAEVINEAALAIRAGMTVD 428

Query: 531 EL 532
           +L
Sbjct: 429 DL 430

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH [Cellular processes, Detoxification]. Length = 463

>gnl|CDD|185420 PTZ00058, PTZ00058, glutathione reductase; Provisional

 Score =  105 bits (263), Expect = 5e-24
 Identities = 87/370 (23%), Positives = 161/370 (43%), Gaps = 64/370 (17%)

Query: 204 RSVTGFNFLLAVERRCLPEPRN----SALISADDLFRLGAWPGKTLVLGGSLMAVEIAAT 259
           + + G N L+AV  +  P   +       IS+DD F++     +  + G   +AVE+   
Sbjct: 199 QVIEGKNILIAVGNK--PIFPDVKGKEFTISSDDFFKIKE-AKRIGIAGSGYIAVELINV 255

Query: 260 LNFLGVPVTLVYSR-RLLKHFDQEMVRILLSSLTKAGVSIQCCVIEKVISSFDGMKGVRG 318
           +N LG    +     RLL+ FD+ ++  L + + K  ++I      + I      K +  
Sbjct: 256 VNRLGAESYIFARGNRLLRKFDETIINELENDMKKNNINIITHANVEEIEK-VKEKNLTI 314

Query: 319 FHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAV 378
           +  + ++     F  V+  + +  +   LNL  +      K Y+  ++  +TSV +I+AV
Sbjct: 315 YLSDGRKYEH--FDYVIYCVGRSPNTEDLNLKAL-NIKTPKGYIKVDDNQRTSVKHIYAV 371

Query: 379 GGIVHGKPNNA--------------------------------SMAAISA-RLIIERLYG 405
           G     K N                                  +  AI+A RL+ +RL+G
Sbjct: 372 GDCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLADRLFG 431

Query: 406 MQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPE 465
              +  +Y  +P V+      GT+G+SE+ A  +YG + + IY+S    F NL       
Sbjct: 432 PFSRTTNYKLIPSVIFSHPPIGTIGLSEQEAIDIYGKENVKIYESR---FTNL------- 481

Query: 466 NFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRK 525
            F  +  +   ++        +  ++KLVC+   E + G+H++G N   ++ G+++AL+ 
Sbjct: 482 -FFSVYDMDPAQK--------EKTYLKLVCVGKEELIKGLHIVGLNADEILQGFAVALKM 532

Query: 526 FLTKAELDGT 535
             TKA+ D T
Sbjct: 533 NATKADFDET 542

Length = 561

>gnl|CDD|215301 PLN02546, PLN02546, glutathione reductase

 Score = 99.2 bits (247), Expect = 6e-22
 Identities = 93/361 (25%), Positives = 166/361 (45%), Gaps = 35/361 (9%)

Query: 179 LKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAVE-RRCLPE-PRNSALISADDLFR 236
           LK  G+ ++       +PHT+ +  +  T  N L+AV  R  +P+ P     I +D    
Sbjct: 188 LKNAGVTLIEGRGKIVDPHTVDVDGKLYTARNILIAVGGRPFIPDIPGIEHAIDSDAALD 247

Query: 237 LGAWPGKTLVLGGSLMAVEIAATLNFLGVPV-TLVYSRRLLKHFDQEMVRILLSSLTKAG 295
           L + P K  ++GG  +A+E A   N L   V   +  +++L+ FD+E+   +   ++  G
Sbjct: 248 LPSKPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRGFDEEVRDFVAEQMSLRG 307

Query: 296 VSIQCC-VIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGV 354
           +        + +I S DG   ++     +K      F  V+ A  +K +   L L  +GV
Sbjct: 308 IEFHTEESPQAIIKSADGSLSLK----TNKGTVEG-FSHVMFATGRKPNTKNLGLEEVGV 362

Query: 355 DIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQDQLMDYS 414
            + K   +  +E  +TSV +I+AVG  V  + N   +A +    + + L+G +    DY 
Sbjct: 363 KMDKNGAIEVDEYSRTSVPSIWAVGD-VTDRINLTPVALMEGGALAKTLFGNEPTKPDYR 421

Query: 415 FLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVCLK 474
            +P  V      G VG++EE A + YG   + ++ +++      L  L    F+KL    
Sbjct: 422 AVPSAVFSQPPIGQVGLTEEQAIEEYG--DVDVFTANFRPLKATLSGLPDRVFMKL---- 475

Query: 475 GGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDG 534
                             +VC K   +VLG+H+ G++   +I G+++A++  LTKA+ D 
Sbjct: 476 ------------------IVCAKTN-KVLGVHMCGEDAPEIIQGFAVAVKAGLTKADFDA 516

Query: 535 T 535
           T
Sbjct: 517 T 517

Length = 558

>gnl|CDD|233368 TIGR01350, lipoamide_DH, dihydrolipoamide dehydrogenase

 Score = 96.6 bits (241), Expect = 2e-21
 Identities = 89/366 (24%), Positives = 162/366 (44%), Gaps = 43/366 (11%)

Query: 179 LKALGIDIVRTAAAFTNPHTIKLSN----RSVTGFNFLLAV--ERRCLP---EPRNSALI 229
           LK   + +++  A F +P T+ ++      ++   N ++A     R LP   +     +I
Sbjct: 99  LKKNKVTVIKGEAKFLDPGTVSVTGENGEETLEAKNIIIATGSRPRSLPGPFDFDGKVVI 158

Query: 230 SADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLV-YSRRLLKHFDQEMVRILL 288
           ++     L   P   +++GG ++ VE A+    LG  VT++    R+L   D E+ ++L 
Sbjct: 159 TSTGALNLEEVPESLVIIGGGVIGVEFASIFASLGSKVTVIEMLDRILPGEDAEVSKVLQ 218

Query: 289 SSLTKAGVSIQCCVIE--KVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAA 346
            +L K GV I    +   KV +       V  +  +  E      + V+ A+ +K +   
Sbjct: 219 KALKKKGVKI----LTNTKVTAVEKNDDQVT-YENKGGETETLTGEKVLVAVGRKPNTEG 273

Query: 347 LNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGM 406
           L L  +GV++ ++  +V +E  +T+V  I+A+G ++ G P  A +A+    +  E + G 
Sbjct: 274 LGLEKLGVELDERGRIVVDEYMRTNVPGIYAIGDVI-GGPMLAHVASHEGIVAAENIAGK 332

Query: 407 QDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPEN 466
           +   +DY  +P V+  D E  +VG++EE A       G  +    +P   N         
Sbjct: 333 EPAHIDYDAVPSVIYTDPEVASVGLTEEQAK----EAGYDVKIGKFPFAAN--------- 379

Query: 467 FVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKF 526
                   G    LG      + FVK++  K    +LG H+IG +   +I   +LA+   
Sbjct: 380 --------GKALALG----ETDGFVKIIADKKTGEILGAHIIGPHATELISEAALAMELE 427

Query: 527 LTKAEL 532
            T  EL
Sbjct: 428 GTVEEL 433

This model describes dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. Length = 460

>gnl|CDD|215281 PLN02507, PLN02507, glutathione reductase

 Score = 93.7 bits (233), Expect = 2e-20
 Identities = 91/376 (24%), Positives = 160/376 (42%), Gaps = 40/376 (10%)

Query: 169 IRAKNDSMRELKALGIDIVRTAAAFTNPHTIKL-----SNRSVTGFNFLLAVERRCLPE- 222
           +R      R L   G+ +         P+ +++     +    T  + L+A   R     
Sbjct: 124 LRLNGIYKRLLANAGVKLYEGEGKIVGPNEVEVTQLDGTKLRYTAKHILIATGSRAQRPN 183

Query: 223 -PRNSALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRL-LKHFD 280
            P     I++D+   L   P + +VLGG  +AVE A+    +G  V L + + L L+ FD
Sbjct: 184 IPGKELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRGFD 243

Query: 281 QEMVRILLSSLTKAGVSIQC-CVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAME 339
            EM  ++  +L   G+++     + ++  +  G+K V   H E  E  ADV   V+ A  
Sbjct: 244 DEMRAVVARNLEGRGINLHPRTNLTQLTKTEGGIK-VITDHGE--EFVADV---VLFATG 297

Query: 340 KKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLI 399
           +  +   LNL  +GV++ K   V  +E  +T++ +I+A+G  V  + N   +A +     
Sbjct: 298 RAPNTKRLNLEAVGVELDKAGAVKVDEYSRTNIPSIWAIGD-VTNRINLTPVALMEGTCF 356

Query: 400 IERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLL 459
            + ++G Q    DY  +   V        VG+SEE A +    D LV + SS+    N  
Sbjct: 357 AKTVFGGQPTKPDYENVACAVFCIPPLSVVGLSEEEAVEQAKGDILV-FTSSFNPMKNT- 414

Query: 460 DPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGY 519
                                 I    +   +KL+     ++VLG  + G +   ++ G 
Sbjct: 415 ----------------------ISGRQEKTVMKLIVDAETDKVLGASMCGPDAPEIMQGI 452

Query: 520 SLALRKFLTKAELDGT 535
           ++AL+   TKA+ D T
Sbjct: 453 AVALKCGATKAQFDST 468

Length = 499

>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated

 Score = 91.0 bits (227), Expect = 2e-19
 Identities = 81/323 (25%), Positives = 137/323 (42%), Gaps = 26/323 (8%)

Query: 177 RELKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAVERRC--LPEPRNSA---LISA 231
              K   ID ++  A F +P+T++++   +   N ++A   R   +P         L+++
Sbjct: 100 GLEKKPKIDKIKGTARFVDPNTVEVNGERIEAKNIVIATGSRVPPIPGVWLILGDRLLTS 159

Query: 232 DDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLV-YSRRLLKHFDQEMVRILLSS 290
           DD F L   P    V+GG ++ +E+   L+ LGV VT+     R+L   D E+ +     
Sbjct: 160 DDAFELDKLPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPLEDPEVSKQAQKI 219

Query: 291 LTKAGVSIQCCVIE--KVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALN 348
           L+K     +  +    KV S             +  +        V+ A  ++ +   L 
Sbjct: 220 LSK-----EFKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRPNTDGLG 274

Query: 349 LHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQD 408
           L + G+++ ++   V +E  QTSV  I+A G +  GKP     AA   R+  E   G   
Sbjct: 275 LENTGIELDERGRPVVDEHTQTSVPGIYAAGDVN-GKPPLLHEAADEGRIAAENAAGDVA 333

Query: 409 QLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDP-----LL 463
             + Y  +P VV  D +  +VG++EE       A G+       P F+            
Sbjct: 334 GGVRYHPIPSVVFTDPQIASVGLTEEELK----AAGIDYVVGEVP-FEA--QGRARVMGK 386

Query: 464 PENFVKLVCLKGGERVLGIHVIG 486
            + FVK+   K   R+LG H+IG
Sbjct: 387 NDGFVKVYADKKTGRLLGAHIIG 409

Length = 460

>gnl|CDD|235798 PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed

 Score = 87.5 bits (218), Expect = 2e-18
 Identities = 91/371 (24%), Positives = 149/371 (40%), Gaps = 75/371 (20%)

Query: 179 LKALGIDIVRTAAAFTNPHTIK----LSNRSVTGFNFLLAV--ERRCLP--EPRNSALIS 230
           LK   +DI+R  A   +P+T++       ++ T  N +LA     R LP  E     + +
Sbjct: 102 LKKNKVDIIRGEAKLVDPNTVRVMTEDGEQTYTAKNIILATGSRPRELPGIEIDGRVIWT 161

Query: 231 ADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLS 289
           +D+   L   P   +V+GG  + VE A+    LG  VT+V +  R+L   D+E+ ++   
Sbjct: 162 SDEALNLDEVPKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPGEDKEISKLAER 221

Query: 290 SLTKAGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDF----- 344
           +L K G+ I+     K         GV     E                E+  +      
Sbjct: 222 ALKKRGIKIKTGA--KAKKVEQTDDGVT-VTLEDGGK------------EETLEADYVLV 266

Query: 345 --------AALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISA 396
                     L L  +GV   +  ++  +E+ +T+V NI+A+G IV G P  A  A+   
Sbjct: 267 AVGRRPNTENLGLEELGVKTDR-GFIEVDEQLRTNVPNIYAIGDIV-GGPMLAHKASAEG 324

Query: 397 RLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFD 456
            +  E + G     +DY  +P V     E  +VG++E  A +      + + K  +P   
Sbjct: 325 IIAAEAIAG-NPHPIDYRGIPAVTYTHPEVASVGLTEAKAKE--EGFDVKVVK--FPFAG 379

Query: 457 N-----LLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQN 511
           N     L +    + FVKL+  K                      K GE VLG H++G  
Sbjct: 380 NGKALALGE---TDGFVKLIFDK----------------------KDGE-VLGAHMVGAR 413

Query: 512 VAGMIFGYSLA 522
            + +I    LA
Sbjct: 414 ASELIQEAQLA 424

Length = 462

>gnl|CDD|235787 PRK06370, PRK06370, mercuric reductase; Validated

 Score = 84.5 bits (210), Expect = 2e-17
 Identities = 56/275 (20%), Positives = 113/275 (41%), Gaps = 9/275 (3%)

Query: 170 RAKNDSMRELKAL-GIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAVERRC----LPEPR 224
           R+++ S + L+ L G+D+ R  A F +P+T+++   ++      +    R     +P   
Sbjct: 95  RSRHGSEQWLRGLEGVDVFRGHARFESPNTVRVGGETLRAKRIFINTGARAAIPPIPGLD 154

Query: 225 NSALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLV-YSRRLLKHFDQEM 283
               ++ + +F L   P   +++GG  + +E A      G  VT++    RLL   D+++
Sbjct: 155 EVGYLTNETIFSLDELPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPREDEDV 214

Query: 284 VRILLSSLTKAGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFD 343
              +   L + G+ ++       +        V G       P       +V A+ +  +
Sbjct: 215 AAAVREILEREGIDVRLNAECIRVERDGDGIAV-GLDCNGGAPEITGSHILV-AVGRVPN 272

Query: 344 FAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERL 403
              L L   GV+   + Y+  +++ +T+   I+A G   +G+      A   AR++   L
Sbjct: 273 TDDLGLEAAGVETDARGYIKVDDQLRTTNPGIYAAGD-CNGRGAFTHTAYNDARIVAANL 331

Query: 404 YGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAK 438
                + +    +P     D     VGM+E  A K
Sbjct: 332 LDGGRRKVSDRIVPYATYTDPPLARVGMTEAEARK 366

Length = 463

>gnl|CDD|235660 PRK05976, PRK05976, dihydrolipoamide dehydrogenase; Validated

 Score = 82.6 bits (205), Expect = 7e-17
 Identities = 72/298 (24%), Positives = 135/298 (45%), Gaps = 33/298 (11%)

Query: 229 ISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLV-YSRRLLKHFDQEMVRIL 287
           IS+D+   L   P   +++GG ++ +E A+ L   GV VT+V  + R+L   D E+ + +
Sbjct: 168 ISSDEALSLETLPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPTEDAELSKEV 227

Query: 288 LSSLTKAGVSIQ--CCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFA 345
              L K GV +     V+   +    G+  V   + E K   AD  K +V ++ ++ +  
Sbjct: 228 ARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEAD--KVLV-SVGRRPNTE 284

Query: 346 ALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYG 405
            + L +  +D++   ++  ++  QT   +I+A+G ++ G+P  A +A     +  E + G
Sbjct: 285 GIGLENTDIDVEGG-FIQIDDFCQTKERHIYAIGDVI-GEPQLAHVAMAEGEMAAEHIAG 342

Query: 406 MQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPE 465
            + +  DY+ +P     D E  +VG++EE A       G  +    +P   N        
Sbjct: 343 KKPRPFDYAAIPACCYTDPEVASVGLTEEEAK----EAGYDVKVGKFPFAAN-------- 390

Query: 466 NFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLAL 523
                    G     G      + FVK+V  +    +LG+  +G +V  +I  ++LAL
Sbjct: 391 ---------GKALTYG----ESDGFVKVVADRDTHDILGVQAVGPHVTELISEFALAL 435

Length = 472

>gnl|CDD|200098 TIGR01423, trypano_reduc, trypanothione-disulfide reductase

 Score = 76.2 bits (187), Expect = 1e-14
 Identities = 76/294 (25%), Positives = 135/294 (45%), Gaps = 24/294 (8%)

Query: 229 ISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNF---LGVPVTLVYSRRL-LKHFDQEMV 284
           IS+++ F L   P + L +GG  ++VE A   N     G  VTL Y   + L+ FD  + 
Sbjct: 175 ISSNEAFYLDEPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRGFDSTLR 234

Query: 285 RILLSSLTKAGVSIQCCV-IEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFD 343
           + L   L   G++I       KV  + DG K V       K    DV    +  + +   
Sbjct: 235 KELTKQLRANGINIMTNENPAKVTLNADGSKHVT--FESGKTLDVDVVMMAIGRVPRTQT 292

Query: 344 FAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERL 403
              L L  +GV++ KK  +  +E  +T+V NI+A+G +   +     +A       ++ +
Sbjct: 293 ---LQLDKVGVELTKKGAIQVDEFSRTNVPNIYAIGDVT-DRVMLTPVAINEGAAFVDTV 348

Query: 404 YGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSY-PTFDNLLDPL 462
           +G + +  D++ +   V      GT G+ EE AAK +  + + +Y+SS+ P   N+    
Sbjct: 349 FGNKPRKTDHTRVASAVFSIPPIGTCGLVEEDAAKKF--EKVAVYESSFTPLMHNISGSK 406

Query: 463 LPENFVKLVCLKGGERVLGIHVIGQNN--FVKLV--CLKGGERV------LGIH 506
             +   K+V       VLG+H++G ++   ++ V  CLK   ++      +G+H
Sbjct: 407 YKKFVAKIVTNHADGTVLGVHLLGDSSPEIIQAVGICLKLNAKISDFYNTIGVH 460

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase. Length = 486

>gnl|CDD|181142 PRK07846, PRK07846, mycothione reductase; Reviewed

 Score = 74.2 bits (183), Expect = 4e-14
 Identities = 83/334 (24%), Positives = 135/334 (40%), Gaps = 50/334 (14%)

Query: 177 RELKALGIDIVRTAAAFTNPHTIKLSNRSV-TGFNFLLAVERRCL--PEPRNSALI--SA 231
           R      ID+ R  A F  P T++  +    T    ++A   R +  P   +S +   ++
Sbjct: 97  RGRDTPNIDVYRGHARFIGPKTLRTGDGEEITADQVVIAAGSRPVIPPVIADSGVRYHTS 156

Query: 232 DDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLV-YSRRLLKHFDQEMVRILLSS 290
           D + RL   P   +++GG  +A E A   + LGV VT+V  S RLL+H D +    +   
Sbjct: 157 DTIMRLPELPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRHLDDD----ISER 212

Query: 291 LTK-AGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNL 349
            T+ A       +   V+       GV     +     ADV   ++ A  +  +   L+ 
Sbjct: 213 FTELASKRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADV---LLVATGRVPNGDLLDA 269

Query: 350 HHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPN------NASMAAISARLIIERL 403
              GVD+ +   VV +E  +TS   +FA+G +    P       N     +   L    L
Sbjct: 270 AAAGVDVDEDGRVVVDEYQRTSAEGVFALGDV--SSPYQLKHVANHEARVVQHNL----L 323

Query: 404 YGMQDQLMDYSFLPVVVRGDVEFGTVGMSE-EAAAKVYGADGLVIYKSSY---------- 452
           +       D+ F+P  V    +  +VG++E EA A   G D + +   +Y          
Sbjct: 324 HPDDLIASDHRFVPAAVFTHPQIASVGLTENEARAA--GLD-ITVKVQNYGDVAYGWAME 380

Query: 453 PTFDNLLDPLLPENFVKLVCLKGGERVLGIHVIG 486
            T            FVKL+  +   R+LG H+IG
Sbjct: 381 DT----------TGFVKLIADRDTGRLLGAHIIG 404

Length = 451

>gnl|CDD|235779 PRK06327, PRK06327, dihydrolipoamide dehydrogenase; Validated

 Score = 71.9 bits (177), Expect = 3e-13
 Identities = 64/261 (24%), Positives = 120/261 (45%), Gaps = 20/261 (7%)

Query: 236 RLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVT-LVYSRRLLKHFDQEMVRILLSSLTKA 294
                P K  V+G  ++ +E+ +    LG  VT L      L   D+++ +    + TK 
Sbjct: 178 NFTEVPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAAADEQVAKEAAKAFTKQ 237

Query: 295 GVSIQCCVIEKVISSFDGMKGVRGFHPESK--EPFADVFKTVVNAMEKKFDFAALNLHHI 352
           G+ I   V  K+     G KGV   + ++       +V K +V ++ +  +   L L  +
Sbjct: 238 GLDIHLGV--KIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIV-SIGRVPNTDGLGLEAV 294

Query: 353 GVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQDQLMD 412
           G+ + ++ ++  ++  +T+V N++A+G +V   P  A  A      + ER+ G Q   +D
Sbjct: 295 GLKLDERGFIPVDDHCRTNVPNVYAIGDVV-RGPMLAHKAEEEGVAVAERIAG-QKGHID 352

Query: 413 YSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDN-----LLDPLLPENF 467
           Y+ +P V+    E   VG +E+       A+G+      +P   N     + +   P+ F
Sbjct: 353 YNTIPWVIYTSPEIAWVGKTEQQLK----AEGVEYKAGKFPFMANGRALAMGE---PDGF 405

Query: 468 VKLVCLKGGERVLGIHVIGQN 488
           VK++     + +LG+HVIG N
Sbjct: 406 VKIIADAKTDEILGVHVIGPN 426

Length = 475

>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase

 Score = 69.7 bits (171), Expect = 3e-13
 Identities = 45/171 (26%), Positives = 74/171 (43%), Gaps = 28/171 (16%)

Query: 228 LISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLV-YSRRLLKHFDQEMVRI 286
           +I +D++  L   P + +V+GG  + +E+AA L  LG  VT+V    RLL   D E+   
Sbjct: 129 VIDSDEILELLELPKRVVVVGGGYIGLELAAALAKLGKEVTVVERRDRLLARADDEISAA 188

Query: 287 LLSSLTKAGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAA 346
           LL  L K  + +   ++  V+      K V                 V     ++ D   
Sbjct: 189 LLEKLEKLLLGVTVLLVVVVVVKVGDGKVVE----------------VKLGDGEELDADV 232

Query: 347 L-----------NLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKP 386
           +            L   GV++ ++ Y+V +E  +TSV  I+A G +  GKP
Sbjct: 233 VLVAIGRRPNTELLEQAGVELDERGYIVVDEYLRTSVPGIYAAGDVAEGKP 283

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283

>gnl|CDD|132493 TIGR03452, mycothione_red, mycothione reductase

 Score = 67.9 bits (166), Expect = 5e-12
 Identities = 77/322 (23%), Positives = 129/322 (40%), Gaps = 40/322 (12%)

Query: 184 IDIVRTAAAFTNPHTIKL-SNRSVTGFNFLLAVERRCLPEPRNSALISA--------DDL 234
           ID+    A F  P T++      +TG   ++A   R    P     I+         +D+
Sbjct: 107 IDVYDGHARFVGPRTLRTGDGEEITGDQIVIAAGSR----PYIPPAIADSGVRYHTNEDI 162

Query: 235 FRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLV-YSRRLLKHFDQEMVRILLSSLTK 293
            RL   P   +++GG  +A E A   + LG  VT+V  S +LL+H D++   I       
Sbjct: 163 MRLPELPESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRHLDED---ISDRFTEI 219

Query: 294 AGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIG 353
           A       +   V +      GV     +     ADV   ++ A  +  +   L+    G
Sbjct: 220 AKKKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADV---LLVATGRVPNGDLLDAEAAG 276

Query: 354 VDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQD-QLMD 412
           V++ +   +  +E  +TS   ++A+G  V        +A   AR++   L    D + M 
Sbjct: 277 VEVDEDGRIKVDEYGRTSARGVWALGD-VSSPYQLKHVANAEARVVKHNLLHPNDLRKMP 335

Query: 413 YSFLPVVVRGDVEFGTVGMSEEAAAKVYGAD--------GLVIYKSSYPTFDNLLDPLLP 464
           + F+P  V    +  TVG++ E  A+  G D        G V Y   +   D        
Sbjct: 336 HDFVPSAVFTHPQIATVGLT-EQEAREAGHDITVKIQNYGDVAY--GWAMEDT------- 385

Query: 465 ENFVKLVCLKGGERVLGIHVIG 486
             F KL+  +   ++LG H+IG
Sbjct: 386 TGFCKLIADRDTGKLLGAHIIG 407

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. Length = 452

>gnl|CDD|180409 PRK06115, PRK06115, dihydrolipoamide dehydrogenase; Reviewed

 Score = 66.4 bits (162), Expect = 1e-11
 Identities = 67/259 (25%), Positives = 118/259 (45%), Gaps = 26/259 (10%)

Query: 241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLV-YSRRLLKHFDQEMVRILLSSLTKAGVSIQ 299
           P   +V+G  ++ +E+ +    LG  VT+V Y  R+    D E  + L  +LTK G+  +
Sbjct: 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPGTDTETAKTLQKALTKQGMKFK 233

Query: 300 CCVIEKVISSFDGMKGVR-GFHP------ESKEPFADVFKTVVNAMEKKFDFAALNLHHI 352
             +  KV  +  G  GV     P      E+ +  AD    V+ A+ ++     L L  +
Sbjct: 234 --LGSKVTGATAGADGVSLTLEPAAGGAAETLQ--ADY---VLVAIGRRPYTQGLGLETV 286

Query: 353 GVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQDQLMD 412
           G++  K+  ++ N+  +TSV  ++ +G +  G P  A  A   A   IER+ G   + ++
Sbjct: 287 GLETDKRG-MLANDHHRTSVPGVWVIGDVTSG-PMLAHKAEDEAVACIERIAGKAGE-VN 343

Query: 413 YSFLPVVVRGDVEFGTVGMSEE---AAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVK 469
           Y  +P V+    E  TVG +EE   A  + Y         +S    ++       E F K
Sbjct: 344 YGLIPGVIYTRPEVATVGKTEEQLKAEGRAYKVGKFPFTANSRAKINHE-----TEGFAK 398

Query: 470 LVCLKGGERVLGIHVIGQN 488
           ++     + VLG+H++G +
Sbjct: 399 ILADARTDEVLGVHMVGPS 417

Length = 466

>gnl|CDD|237806 PRK14727, PRK14727, putative mercuric reductase; Provisional

 Score = 62.3 bits (151), Expect = 3e-10
 Identities = 68/286 (23%), Positives = 114/286 (39%), Gaps = 27/286 (9%)

Query: 241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVSIQC 300
           P    V+G S++A EIA     LG  VT++    LL   D  +   L +   K G+ +  
Sbjct: 188 PASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLLFREDPLLGETLTACFEKEGIEVLN 247

Query: 301 CVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKS 360
                ++   D      GF   +        K ++ +  +  +   LNL  +GV      
Sbjct: 248 NTQASLVEHDDN-----GFVLTTGHGELRAEKLLI-STGRHANTHDLNLEAVGVTTDTSG 301

Query: 361 YVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQDQLMDYSFLPVVV 420
            +V N   +TS  +I+A G      P    +AA +       + G    L D S +P V+
Sbjct: 302 AIVVNPAMETSAPDIYAAGDCSD-LPQFVYVAAAAGSRAGINMTGGNATL-DLSAMPAVI 359

Query: 421 RGDVEFGTVGMSE-EAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVCLKGGERV 479
             D +  TVG+SE +A          V+   + P     L     + F+KLV  +G  ++
Sbjct: 360 FTDPQVATVGLSEAKAHLSGIETISRVLTMENVP---RALANFETDGFIKLVAEEGTRKL 416

Query: 480 LGIHVIGQNNFVKLVCLKGGERV----LGIH--VIGQNVAGMIFGY 519
           +G  ++           +GGE +    L IH  +  + +A  +F Y
Sbjct: 417 IGAQILAH---------EGGELIQSAALAIHNRMTVEELADQLFPY 453

Length = 479

>gnl|CDD|235373 PRK05249, PRK05249, soluble pyridine nucleotide transhydrogenase; Provisional

 Score = 62.1 bits (152), Expect = 3e-10
 Identities = 94/436 (21%), Positives = 166/436 (38%), Gaps = 98/436 (22%)

Query: 107 RQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKR 166
           R+   R     +   + S+R K R    +  +DL       +  +  I   N   ++ + 
Sbjct: 56  REAVLRLIGFNQNPLYSSYRVKLR----ITFADL------LARADHVI---NKQVEVRRG 102

Query: 167 FCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSN-----RSVTGFNFLLAVERRCLP 221
              R +           +D+++  A F +PHT+++        ++T    ++A   R   
Sbjct: 103 QYERNR-----------VDLIQGRARFVDPHTVEVECPDGEVETLTADKIVIATGSR--- 148

Query: 222 EPRNSALIS--------ADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSR 273
            P     +         +D +  L   P   ++ G  ++  E A+    LGV VTL+ +R
Sbjct: 149 -PYRPPDVDFDHPRIYDSDSILSLDHLPRSLIIYGAGVIGCEYASIFAALGVKVTLINTR 207

Query: 274 -RLLKHFDQEMVRILLSSLTKAGVSIQCCVIEKVISSFDGMKGVRGFHPES-KEPFADVF 331
            RLL   D E+   L   L  +GV+I+    E+V     G  GV   H +S K+  AD  
Sbjct: 208 DRLLSFLDDEISDALSYHLRDSGVTIR--HNEEVEKVEGGDDGVI-VHLKSGKKIKAD-- 262

Query: 332 KTVVNAMEKKFDFAA--------LNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVH 383
                       +A         LNL + G++   +  +  NE  QT+V +I+AVG ++ 
Sbjct: 263 ---------CLLYANGRTGNTDGLNLENAGLEADSRGQLKVNENYQTAVPHIYAVGDVI- 312

Query: 384 GKPNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEA--AAKVYG 441
           G P+ AS +    R+  +   G     +    +P  +    E  +VG +E+   AAKV  
Sbjct: 313 GFPSLASASMDQGRIAAQHAVGEATAHL-IEDIPTGIYTIPEISSVGKTEQELTAAKVPY 371

Query: 442 ADGLVIYKSSYPTFDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNN-FVKLVCLKGGE 500
             G   +K                       L          + G N   +K++  +   
Sbjct: 372 EVGRARFKE----------------------LARA------QIAGDNVGMLKILFHRETL 403

Query: 501 RVLGIHVIGQNVAGMI 516
            +LG+H  G+    +I
Sbjct: 404 EILGVHCFGERATEII 419

Length = 461

>gnl|CDD|217252 pfam02852, Pyr_redox_dim, Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain

 Score = 56.4 bits (137), Expect = 6e-10
 Identities = 33/119 (27%), Positives = 48/119 (40%), Gaps = 25/119 (21%)

Query: 417 PVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVCLKGG 476
           P VV  D E  +VG++EE A K  G   + + K  +      L     + FVKLV     
Sbjct: 2   PSVVFTDPEIASVGLTEEEAKKKGGE--VKVGKFPFKANGRALAYGETKGFVKLVADAET 59

Query: 477 ERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT 535
            R+LG H++G N          GE              +I   +LA++   T  +L  T
Sbjct: 60  GRILGAHIVGPN---------AGE--------------LIQEAALAIKMGATVEDLANT 95

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. Length = 110

>gnl|CDD|180579 PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed

 Score = 60.0 bits (146), Expect = 1e-09
 Identities = 71/365 (19%), Positives = 150/365 (41%), Gaps = 57/365 (15%)

Query: 179 LKALGIDIVRTAAAFTNPHTIKLSNRS-----VTGFNFLLAVERRCL---PEPRNSALI- 229
            K   + +V     FT  +T++++        +   N ++A   R +     P +   I 
Sbjct: 103 AKGRKVTVVNGLGKFTGGNTLEVTGEDGKTTVIEFDNAIIAAGSRPIQLPFIPHDDPRIW 162

Query: 230 -SADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLV-YSRRLLKHFDQEMVRIL 287
            S D L  L   P + LV+GG ++ +E+    + LG  V +V    +++   D+++V++ 
Sbjct: 163 DSTDAL-ELKEVPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPAADKDIVKVF 221

Query: 288 LSSLTK----------AGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNA 337
              + K            V  +    + +  + +G K      P   +     +  V+ A
Sbjct: 222 TKRIKKQFNIMLETKVTAVEAKE---DGIYVTMEGKKA-----PAEPQ----RYDAVLVA 269

Query: 338 MEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISAR 397
           + +  +   L+    GV++ ++ ++  +++ +T+V +IFA+G IV G+P  A        
Sbjct: 270 VGRVPNGKLLDAEKAGVEVDERGFIRVDKQCRTNVPHIFAIGDIV-GQPMLAHKGVHEGH 328

Query: 398 LIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDN 457
           +  E + G +    D   +P +   + E   VG++E+ A      +G+    +++P   +
Sbjct: 329 VAAEVIAGKKHY-FDPKVIPSIAYTEPEVAWVGLTEKEAK----EEGIEYETATFPWAAS 383

Query: 458 --LLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGM 515
              +     +   KL+  K   RVLG  ++G N          GE      ++G+    +
Sbjct: 384 GRAIASDCADGMTKLIFDKETHRVLGGAIVGTN---------AGE------LLGEIGLAI 428

Query: 516 IFGYS 520
             G  
Sbjct: 429 EMGCD 433

Length = 471

>gnl|CDD|237790 PRK14694, PRK14694, putative mercuric reductase; Provisional

 Score = 58.4 bits (141), Expect = 5e-09
 Identities = 69/250 (27%), Positives = 116/250 (46%), Gaps = 21/250 (8%)

Query: 241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVSIQC 300
           P + LV+G S++A+E+A     LG  VT++   R+L   D  +   + ++  + G+    
Sbjct: 178 PERLLVIGASVVALELAQAFARLGSRVTVLARSRVLSQEDPAVGEAIEAAFRREGIE--- 234

Query: 301 CVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKS 360
            V+++  +S     G R F  E+        + +V A  +  +   LNL  IGV+ ++ +
Sbjct: 235 -VLKQTQASEVDYNG-REFILETNAGTLRAEQLLV-ATGRTPNTENLNLESIGVETERGA 291

Query: 361 YVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQDQLMDYSFLPVVV 420
             + +E  QT+V  I+A G            AA  +R  I    G  D  +D S +P V+
Sbjct: 292 IRI-DEHLQTTVSGIYAAGDCTDQPQFVYVAAAGGSRAAINMTGG--DASLDLSAMPEVI 348

Query: 421 RGDVEFGTVGMSE-EAAAKVYGADGLVIYKSSYP----TFDNLLDPLLPENFVKLVCLKG 475
             D +  TVG+SE EA A+ Y  D   +   + P     FD          F+K+V  +G
Sbjct: 349 FTDPQVATVGLSEAEAQAQGYDTDSRTLDLENVPRALVNFDT-------GGFIKMVAERG 401

Query: 476 GERVLGIHVI 485
             R+LG+ V+
Sbjct: 402 SGRLLGVQVV 411

Length = 468

>gnl|CDD|180743 PRK06912, acoL, dihydrolipoamide dehydrogenase; Validated

 Score = 57.8 bits (140), Expect = 7e-09
 Identities = 60/222 (27%), Positives = 103/222 (46%), Gaps = 22/222 (9%)

Query: 228 LISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLV-YSRRLLKHFDQEMVRI 286
           +I++     L + P   L++GG ++  E A+  + LG  VT+V  + +LL   D+++  I
Sbjct: 157 IINSKHAMSLPSIPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPGEDEDIAHI 216

Query: 287 LLSSLTKAGVSIQCCVIEKVISSFDGMKGVRGFHP-ESKEPFADVFKTVVNAMEKKFDFA 345
           L   L   GV I      K ++S+   K     +    +E  A+    V+ ++ +K    
Sbjct: 217 LREKLENDGVKIFTGAALKGLNSYK--KQALFEYEGSIQEVNAEF---VLVSVGRKPRVQ 271

Query: 346 ALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFA----VGGI--VHGKPNNASMAAISARLI 399
            LNL   GV    K   V NE  QT+V +I+A    +GGI   H   +  + AA+ A   
Sbjct: 272 QLNLEKAGVQFSNKGISV-NEHMQTNVPHIYACGDVIGGIQLAHVAFHEGTTAALHA--- 327

Query: 400 IERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYG 441
                  +D  ++Y  +P  +    E  +VG++E+ A + YG
Sbjct: 328 -----SGEDVKVNYHAVPRCIYTSPEIASVGLTEKQAREQYG 364

Length = 458

>gnl|CDD|163244 TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase

 Score = 57.4 bits (139), Expect = 8e-09
 Identities = 60/264 (22%), Positives = 112/264 (42%), Gaps = 25/264 (9%)

Query: 241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVY-SRRLL-KHFDQEMVRILLSSLTKAGVSI 298
               +++GG  + +E+A  L   G  VTL++ S R+L K FD+EM +I+   L K  +++
Sbjct: 137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINL 196

Query: 299 QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKK 358
           +   + + + S +G + V+ F          V       ++   + A       G+ + +
Sbjct: 197 R---LNEEVDSIEGEERVKVFTSGGVYQADMVILAT--GIKPNSELA----KDSGLKLGE 247

Query: 359 KSYVVCNEKDQTSVGNIFAVGG------IVHGKPNNASMAAIS---ARLIIERLYGMQDQ 409
              +  NEK QTSV NI+A G       I+  KP    +A  +    R+  E + G   +
Sbjct: 248 TGAIWVNEKFQTSVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENIAGNDIE 307

Query: 410 LMDYSFLPVVVRGDVEFGTVGMSEEAAAKV-YGADGLVIYKSSYPTFDNLLDPLLPENFV 468
                   +    D+   + G++E  A K+      + +   ++  +     PL     +
Sbjct: 308 FKGVLGTNITKFFDLTIASTGVTENEAKKLNIDYKTVFVKAKTHANYYPGNSPLH----L 363

Query: 469 KLVCLKGGERVLGIHVIGQNNFVK 492
           KL+  K   R+LG   +G+    K
Sbjct: 364 KLIYEKDTRRILGAQAVGKEGADK 387

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol [Cellular processes, Detoxification]. Length = 427

>gnl|CDD|181958 PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed

 Score = 57.0 bits (138), Expect = 1e-08
 Identities = 67/271 (24%), Positives = 112/271 (41%), Gaps = 48/271 (17%)

Query: 245 LVLGGSLMAVEIAATLNFLGVPVTLV-YSRRLL-KHFDQEMVRILLSSLTKAGVSIQCCV 302
           +++G   + +E       LG  V ++    R+L   FD+E+  ++   L + GV +   +
Sbjct: 153 VIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELH--L 210

Query: 303 IEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYV 362
            E V  S  G   V G   +  E  ADV   V+ A   K +   L     G+   K   +
Sbjct: 211 NEFV-KSLIGEDKVEGVVTDKGEYEADV---VIVATGVKPNTEFLE--DTGLKTLKNGAI 264

Query: 363 VCNEKDQTSVGNIFAVG------GIVHGKPNNASMAAIS---ARLIIERLYGMQDQL--- 410
           + +E  +TS+ NI+A G       IV  K     +A  +    R++ E L G        
Sbjct: 265 IVDEYGETSIENIYAAGDCATIYNIVSNKNVYVPLATTANKLGRMVGENLAGRHVSFKGT 324

Query: 411 MDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSS----------YPTFDNLLD 460
           +  + + V+   D+E    G++EE  AK  G D    YK+           YP  ++L  
Sbjct: 325 LGSACIKVL---DLEAARTGLTEE-EAKKLGID----YKTVFIKDKNHTNYYPGQEDL-- 374

Query: 461 PLLPENFVKLVCLKGGERVLGIHVIGQNNFV 491
                 +VKL+     + +LG  +IG+   V
Sbjct: 375 ------YVKLIYEADTKVILGGQIIGKKGAV 399

Length = 444

>gnl|CDD|215691 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide oxidoreductase

 Score = 48.4 bits (116), Expect = 2e-07
 Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 2/72 (2%)

Query: 243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYSR-RLLKHFDQEMVRILLSSLTKAGVSIQC- 300
           + +V+GG  + +E A+ L  LG  VT+V  R RLL+ FD+E+ +IL   L K G+ +   
Sbjct: 1   RVVVVGGGYIGLEFASALAKLGSKVTVVERRDRLLRGFDEEIAKILQEKLEKNGIEVLLN 60

Query: 301 CVIEKVISSFDG 312
             +E++  + DG
Sbjct: 61  TTVEEIEGNGDG 72

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 82

>gnl|CDD|184298 PRK13748, PRK13748, putative mercuric reductase; Provisional

 Score = 50.5 bits (121), Expect = 1e-06
 Identities = 88/363 (24%), Positives = 142/363 (39%), Gaps = 50/363 (13%)

Query: 183 GIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAVERRCLPEPRNSALI------------- 229
            I ++   A F +  T  L  R   G   ++A +R CL     S  +             
Sbjct: 203 AITVLHGEARFKDDQT--LIVRLNDGGERVVAFDR-CLIATGASPAVPPIPGLKETPYWT 259

Query: 230 SADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILLS 289
           S + L      P +  V+G S++A+E+A     LG  VT++    L    D  +   + +
Sbjct: 260 STEALVS-DTIPERLAVIGSSVVALELAQAFARLGSKVTILARSTLFFREDPAIGEAVTA 318

Query: 290 SLTKAGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNL 349
           +    G+ +        ++  DG   +   H E +   AD  K +V A  +  +  +L L
Sbjct: 319 AFRAEGIEVLEHTQASQVAHVDGEFVLTTGHGELR---AD--KLLV-ATGRAPNTRSLAL 372

Query: 350 HHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQDQ 409
              GV +  +  +V ++  +TSV +I+A G            AA   R  I    G  D 
Sbjct: 373 DAAGVTVNAQGAIVIDQGMRTSVPHIYAAGDCTDQPQFVYVAAAAGTRAAINMTGG--DA 430

Query: 410 LMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVK 469
            +D + +P VV  D +  TVG SE  A      DG+    S   T DN+  P    NF  
Sbjct: 431 ALDLTAMPAVVFTDPQVATVGYSEAEAH----HDGIET-DSRTLTLDNV--PRALANF-- 481

Query: 470 LVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTK 529
                               F+KLV  +G  R++G+  +      +I   +LA+R  +T 
Sbjct: 482 ----------------DTRGFIKLVIEEGSGRLIGVQAVAPEAGELIQTAALAIRNRMTV 525

Query: 530 AEL 532
            EL
Sbjct: 526 QEL 528

Length = 561

>gnl|CDD|184103 PRK13512, PRK13512, coenzyme A disulfide reductase; Provisional

 Score = 46.3 bits (110), Expect = 3e-05
 Identities = 33/141 (23%), Positives = 66/141 (46%), Gaps = 12/141 (8%)

Query: 243 KTLVLGGSLMAVEIAATLNFLGVPVTLVY-SRRLLKHFDQEMVRILLSSLTKAGVSIQCC 301
           K LV+G   +++E+   L   G+  TL++ S ++ K  D +M + +L  L K  +  +  
Sbjct: 150 KALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYR-- 207

Query: 302 VIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSY 361
            + + I + +G      F     E +  + + V      KF      +    + +  K +
Sbjct: 208 -LNEEIDAING--NEVTFKSGKVEHYDMIIEGVGTHPNSKF------IESSNIKLDDKGF 258

Query: 362 VVCNEKDQTSVGNIFAVGGIV 382
           +  N+K +T+V NI+A+G I+
Sbjct: 259 IPVNDKFETNVPNIYAIGDII 279

Length = 438

>gnl|CDD|181196 PRK08010, PRK08010, pyridine nucleotide-disulfide oxidoreductase; Provisional

 Score = 46.2 bits (109), Expect = 3e-05
 Identities = 64/278 (23%), Positives = 116/278 (41%), Gaps = 25/278 (8%)

Query: 184 IDIVRTAAAFTNPHTIKL----SNRSVTGFNFLLAVERRCLPEP-----RNSALISADDL 234
           ID++   A F N H++++     N  + G    +    + +  P         +  +  L
Sbjct: 92  IDVIDGQAEFINNHSLRVHRPEGNLEIHGEKIFINTGAQTVVPPIPGITTTPGVYDSTGL 151

Query: 235 FRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRL-LKHFDQEMVRILLSSLTK 293
             L   PG   +LGG  + VE A+     G  VT++ +  L L   D+++   + + L  
Sbjct: 152 LNLKELPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPREDRDIADNIATILRD 211

Query: 294 AGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIG 353
            GV I      + IS  +    V   H E  +   D    ++ A  ++   A+L+  + G
Sbjct: 212 QGVDIILNAHVERISHHENQVQV---HSEHAQLAVD---ALLIASGRQPATASLHPENAG 265

Query: 354 VDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISA---RLIIERLYGM-QDQ 409
           + + ++  +V ++   T+  NI+A+G +  G         IS    R++ + L G  +  
Sbjct: 266 IAVNERGAIVVDKYLHTTADNIWAMGDVTGG----LQFTYISLDDYRIVRDELLGEGKRS 321

Query: 410 LMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVI 447
             D   +P  V        VGM+EE  A+  GAD  V+
Sbjct: 322 TDDRKNVPYSVFMTPPLSRVGMTEE-QARESGADIQVV 358

Length = 441

>gnl|CDD|180907 PRK07251, PRK07251, pyridine nucleotide-disulfide oxidoreductase; Provisional

 Score = 45.1 bits (107), Expect = 6e-05
 Identities = 59/282 (20%), Positives = 116/282 (41%), Gaps = 24/282 (8%)

Query: 169 IRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLS----NRSVTGFNFLL---AVERRCLP 221
           +R KN +M  L   G+D+    A F +   I++        +T    ++   AV    LP
Sbjct: 78  LRGKNYAM--LAGSGVDLYDAEAHFVSNKVIEVQAGDEKIELTAETIVINTGAVSNV-LP 134

Query: 222 EP---RNSALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVY--SRRLL 276
            P    +  +  +  +  L   P +  ++GG  + +E A   N LG  VT V   +  +L
Sbjct: 135 IPGLADSKHVYDSTGIQSLETLPERLGIIGGGNIGLEFAGLYNKLGSKVT-VLDAASTIL 193

Query: 277 KHFDQEMVRILLSSLTKAGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVN 336
              +  +  +    + + G++         + + DG + +     E+       F  ++ 
Sbjct: 194 PREEPSVAALAKQYMEEDGITFLLNAHTTEVKN-DGDQVLVVTEDETY-----RFDALLY 247

Query: 337 AMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISA 396
           A  +K +   L L +  +++ ++  +  ++  QTSV  +FAVG  V+G P    ++    
Sbjct: 248 ATGRKPNTEPLGLENTDIELTERGAIKVDDYCQTSVPGVFAVGD-VNGGPQFTYISLDDF 306

Query: 397 RLIIERLYGMQD-QLMDYSFLPVVVRGDVEFGTVGMSEEAAA 437
           R++   L G     L D   +P  +        VG++E+ A 
Sbjct: 307 RIVFGYLTGDGSYTLEDRGNVPTTMFITPPLSQVGLTEKEAK 348

Length = 438

>gnl|CDD|236106 PRK07818, PRK07818, dihydrolipoamide dehydrogenase; Reviewed

 Score = 42.7 bits (101), Expect = 4e-04
 Identities = 81/322 (25%), Positives = 132/322 (40%), Gaps = 46/322 (14%)

Query: 193 FTNPHTIKLS-----NRSVTGFNFLLAV--ERRCLPEPRNSA-------LISADDLFRLG 238
           FT+ +T+++        +VT  N ++A     R LP    S         I + +L    
Sbjct: 116 FTDANTLEVDLNDGGTETVTFDNAIIATGSSTRLLPGTSLSENVVTYEEQILSREL---- 171

Query: 239 AWPGKTLVLGGSLMAVEIAATLNFLGVPVTLV-YSRRLLKHFDQEMVRILLSSLTKAGVS 297
             P   ++ G   + +E A  L   GV VT+V +  R L + D E+ + +     K GV 
Sbjct: 172 --PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPNEDAEVSKEIAKQYKKLGVK 229

Query: 298 IQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFA----ALNLHHIG 353
           I      KV S  D    V       K+  A   +   + + +   FA       L   G
Sbjct: 230 ILTGT--KVESIDDNGSKVT-VTVSKKDGKAQELE--ADKVLQAIGFAPRVEGYGLEKTG 284

Query: 354 VDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQDQ-LMD 412
           V +  +  +  ++  +T+V +I+A+G  V  K   A +A     +  E + G +   L D
Sbjct: 285 VALTDRGAIAIDDYMRTNVPHIYAIGD-VTAKLQLAHVAEAQGVVAAETIAGAETLELGD 343

Query: 413 YSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDN-----LLDPLLPENF 467
           Y  +P       +  + G++EE A      +G  +  + +P   N     L D   P  F
Sbjct: 344 YRMMPRATFCQPQVASFGLTEEQAR----EEGYDVKVAKFPFTANGKAHGLGD---PTGF 396

Query: 468 VKLVC-LKGGERVLGIHVIGQN 488
           VKLV   K GE +LG H+IG +
Sbjct: 397 VKLVADAKYGE-LLGGHLIGPD 417

Length = 466

>gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

 Score = 41.1 bits (96), Expect = 0.001
 Identities = 52/267 (19%), Positives = 91/267 (34%), Gaps = 21/267 (7%)

Query: 233 DLFRLGAWPGKT-LVLGGSLMAVEIAATLNFLGVPVTLVY-SRRLLKH-FDQEMVRILLS 289
           +  + GA P K  +V+G   + +E A      G  VTL+  + RL     D E+   L  
Sbjct: 127 EALKGGAEPPKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAE 186

Query: 290 SLTKAGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNL 349
            L K GV +     + V     G   V                 ++   E+     A + 
Sbjct: 187 LLEKYGVELL-LGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERPNVVLANDA 245

Query: 350 HHIGVDIKKKSYVVCNEKDQTS-VGNIFAVG---------GIVHGKPNNASMAAISARLI 399
              G+ +     V+ +E+  TS   +++A G             G+    ++A  + R+ 
Sbjct: 246 -LPGLALAGG-AVLVDERGGTSKDPDVYAAGDVAEIPAAETGKGGRIALWAIAVAAGRIA 303

Query: 400 IERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLL 459
            E + G            +   GD+   + G++E     +     LV+           L
Sbjct: 304 AENIAGALRIPGLLGT-VISDVGDLCAASTGLTEGKERGI--DVVLVVSGG--KDPRAHL 358

Query: 460 DPLLPENFVKLVCLKGGERVLGIHVIG 486
            P      +KLV      R+LG   + 
Sbjct: 359 YPGAELVGIKLVGDADTGRILGGQELE 385

Length = 415

>gnl|CDD|223567 COG0493, GltD, NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

 Score = 40.7 bits (96), Expect = 0.001
 Identities = 37/166 (22%), Positives = 60/166 (36%), Gaps = 23/166 (13%)

Query: 243 KTLVLGGSLMAVEIAATLNFLGVP-VTLVYSRRLLKHFDQEM---VRILLSSLTKAGVSI 298
           + +V+GG   A++ A T   LG   VT  Y        ++      ++ + S  + GV  
Sbjct: 264 RVVVIGGGDTAMDCAGTALRLGAKSVTCFYREDRDDETNEWPTWAAQLEVRSAGEEGVER 323

Query: 299 QCCV-IEKVISSFDG-----------------MKGVRGFHPESKEPFADVFKTVVNAMEK 340
              V  +  I +  G                   G RG          D   TV+ A+  
Sbjct: 324 LPFVQPKAFIGNEGGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGF 383

Query: 341 KFDFAALNLHHIGVDIKKKSYVVCNEK-DQTSVGNIFAVGGIVHGK 385
           + D     L   G+ + K+  +  +E   QTS+  +FA G  V G 
Sbjct: 384 EGDATDGLLLEFGLKLDKRGRIKVDENLQQTSIPGVFAGGDAVRGA 429

Length = 457

>gnl|CDD|237197 PRK12770, PRK12770, putative glutamate synthase subunit beta; Provisional

 Score = 40.0 bits (94), Expect = 0.002
 Identities = 38/158 (24%), Positives = 56/158 (35%), Gaps = 18/158 (11%)

Query: 242 GKTLVLGGSLMAVEIAATLNFLGV-PVTLVYSRRLLKHFDQEMVRILLSSLTKAGVSIQC 300
            K +V+G  L AV+ A     LG   V L Y RR +        +  +  L   GV    
Sbjct: 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAY-RRTINE--APAGKYEIERLIARGVEFLE 229

Query: 301 CVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAA-------------- 346
            V    I     ++GV        EP        V     +F   A              
Sbjct: 230 LVTPVRIIGEGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTPP 289

Query: 347 LNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHG 384
                +G+++ +K  +V +EK  TS   +FA G +V G
Sbjct: 290 FAKECLGIELNRKGEIVVDEKHMTSREGVFAAGDVVTG 327

Length = 352

>gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

 Score = 39.6 bits (93), Expect = 0.003
 Identities = 35/162 (21%), Positives = 68/162 (41%), Gaps = 18/162 (11%)

Query: 243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVSIQCCV 302
             +V+GG   AVE A  L+ +   VTLV+ R   +  ++ +V  L  ++      +   V
Sbjct: 145 DVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRA-EEILVERLKKNV--KIEVLTNTV 201

Query: 303 IEKVI-SSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSY 361
           +++++    +G+        E + P   VF  +        +            + +  Y
Sbjct: 202 VKEILGDDVEGVVLKNVKGEEKELPVDGVF--IAIGHLPNTELLKG-----LGVLDENGY 254

Query: 362 VVCNEKDQTSVGNIFAVGGIVHGKP-------NNASMAAISA 396
           +V +E+ +TSV  IFA G +             + ++AA+SA
Sbjct: 255 IVVDEEMETSVPGIFAAGDVADKNGRQIATAAGDGAIAALSA 296

Length = 305

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	535
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	100.0
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	100.0
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	100.0
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	100.0
PRK06116	450	glutathione reductase; Validated	100.0
PLN02546	558	glutathione reductase	100.0
PTZ00058	561	glutathione reductase; Provisional	100.0
PLN02507	499	glutathione reductase	100.0
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	100.0
PRK06370	463	mercuric reductase; Validated	100.0
PRK07846	451	mycothione reductase; Reviewed	100.0
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	100.0
TIGR02053	463	MerA mercuric reductase. This model represents the	100.0
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	100.0
KOG1335|consensus	506		100.0
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	100.0
PRK07845	466	flavoprotein disulfide reductase; Reviewed	100.0
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	100.0
PTZ00153	659	lipoamide dehydrogenase; Provisional	100.0
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	100.0
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	100.0
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	100.0
KOG0405|consensus	478		100.0
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	100.0
PTZ00052	499	thioredoxin reductase; Provisional	100.0
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	100.0
PRK14727	479	putative mercuric reductase; Provisional	100.0
PRK14694	468	putative mercuric reductase; Provisional	100.0
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	100.0
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	100.0
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	100.0
PRK13748	561	putative mercuric reductase; Provisional	100.0
KOG4716|consensus	503		100.0
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	100.0
PRK13512	438	coenzyme A disulfide reductase; Provisional	100.0
PRK09564	444	coenzyme A disulfide reductase; Reviewed	100.0
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	100.0
PRK14989	847	nitrite reductase subunit NirD; Provisional	100.0
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	100.0
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	100.0
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	100.0
PRK12831	464	putative oxidoreductase; Provisional	100.0
KOG1336|consensus	478		100.0
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	100.0
PRK12779	944	putative bifunctional glutamate synthase subunit b	100.0
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	100.0
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	100.0
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	100.0
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	100.0
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	100.0
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	100.0
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	100.0
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	100.0
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	100.0
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	100.0
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	100.0
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	100.0
PRK12814	652	putative NADPH-dependent glutamate synthase small	100.0
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	100.0
PRK10262	321	thioredoxin reductase; Provisional	100.0
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	100.0
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	100.0
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	100.0
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	100.0
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	99.97
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	99.97
PRK12770	352	putative glutamate synthase subunit beta; Provisio	99.97
PRK13984	604	putative oxidoreductase; Provisional	99.97
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	99.97
KOG0399|consensus	2142		99.96
KOG0404|consensus	322		99.95
PLN02852	491	ferredoxin-NADP+ reductase	99.95
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	99.95
KOG2495|consensus	491		99.95
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	99.93
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	99.93
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	99.91
PRK06567	1028	putative bifunctional glutamate synthase subunit b	99.87
KOG1346|consensus	659		99.87
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	99.82
PF02852	110	Pyr_redox_dim: Pyridine nucleotide-disulphide oxid	99.78
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	99.71
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	99.7
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	99.65
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	99.65
KOG2755|consensus	334		99.65
KOG3851|consensus	446		99.63
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	99.62
PTZ00188	506	adrenodoxin reductase; Provisional	99.58
KOG1800|consensus	468		99.53
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	99.52
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	99.52
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	99.43
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	99.35
KOG1399|consensus	448		99.21
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	98.86
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	98.74
PRK12842	574	putative succinate dehydrogenase; Reviewed	98.6
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	98.58
COG2081	408	Predicted flavoproteins [General function predicti	98.51
COG2081	408	Predicted flavoproteins [General function predicti	98.48
KOG1752|consensus	104		98.46
PHA03050	108	glutaredoxin; Provisional	98.39
PRK09897	534	hypothetical protein; Provisional	98.35
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.35
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.35
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	98.34
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	98.33
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	98.32
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	98.28
PRK09564	444	coenzyme A disulfide reductase; Reviewed	98.28
TIGR02189	99	GlrX-like_plant Glutaredoxin-like family. This fam	98.27
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	98.24
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	98.23
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	98.23
PRK06847	375	hypothetical protein; Provisional	98.19
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	98.19
PRK13512	438	coenzyme A disulfide reductase; Provisional	98.18
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	98.13
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	98.13
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	98.09
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	98.08
PRK10262	321	thioredoxin reductase; Provisional	98.08
PRK07236	386	hypothetical protein; Provisional	98.06
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	98.06
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	98.04
PRK12770	352	putative glutamate synthase subunit beta; Provisio	98.04
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	98.03
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	98.0
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	97.99
PRK10824	115	glutaredoxin-4; Provisional	97.98
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	97.97
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	97.97
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	97.96
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	97.94
PRK14989	847	nitrite reductase subunit NirD; Provisional	97.94
PRK08244	493	hypothetical protein; Provisional	97.94
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	97.93
TIGR00365	97	monothiol glutaredoxin, Grx4 family. The gene for	97.93
PRK12779	944	putative bifunctional glutamate synthase subunit b	97.92
PRK06834	488	hypothetical protein; Provisional	97.92
PRK06184	502	hypothetical protein; Provisional	97.91
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.89
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	97.88
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	97.88
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	97.88
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	97.88
PRK08163	396	salicylate hydroxylase; Provisional	97.85
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	97.84
PLN02463	447	lycopene beta cyclase	97.83
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	97.82
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	97.82
PRK07588	391	hypothetical protein; Provisional	97.82
KOG1399|consensus	448		97.82
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	97.81
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	97.81
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	97.8
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	97.8
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	97.79
PRK06475	400	salicylate hydroxylase; Provisional	97.79
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	97.78
KOG0399|consensus	2142		97.78
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	97.78
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	97.77
PRK05868	372	hypothetical protein; Validated	97.77
PRK07845	466	flavoprotein disulfide reductase; Reviewed	97.76
PRK11728	393	hydroxyglutarate oxidase; Provisional	97.75
PTZ00188	506	adrenodoxin reductase; Provisional	97.74
COG0579	429	Predicted dehydrogenase [General function predicti	97.73
PRK09126	392	hypothetical protein; Provisional	97.73
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	97.72
PRK12831	464	putative oxidoreductase; Provisional	97.71
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	97.71
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	97.71
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	97.7
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	97.69
PRK08132	547	FAD-dependent oxidoreductase; Provisional	97.69
PRK06126	545	hypothetical protein; Provisional	97.69
PRK14694	468	putative mercuric reductase; Provisional	97.69
PRK06116	450	glutathione reductase; Validated	97.69
cd03028	90	GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte	97.69
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	97.68
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	97.68
PLN02852	491	ferredoxin-NADP+ reductase	97.67
PRK06753	373	hypothetical protein; Provisional	97.67
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	97.67
PRK07190	487	hypothetical protein; Provisional	97.65
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	97.64
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	97.64
PRK10157	428	putative oxidoreductase FixC; Provisional	97.63
PRK08013	400	oxidoreductase; Provisional	97.62
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	97.62
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	97.61
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	97.6
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.6
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	97.6
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	97.59
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	97.59
PRK07045	388	putative monooxygenase; Reviewed	97.59
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	97.59
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	97.58
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	97.57
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	97.57
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	97.55
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	97.54
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	97.54
PLN02463	447	lycopene beta cyclase	97.54
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	97.53
PRK07538	413	hypothetical protein; Provisional	97.52
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	97.51
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	97.51
PLN02661	357	Putative thiazole synthesis	97.51
PRK06370	463	mercuric reductase; Validated	97.5
PLN02697	529	lycopene epsilon cyclase	97.49
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	97.49
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	97.48
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	97.47
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	97.45
PLN02507	499	glutathione reductase	97.45
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	97.44
TIGR00275	400	flavoprotein, HI0933 family. The model when search	97.44
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.44
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	97.44
PRK12814	652	putative NADPH-dependent glutamate synthase small	97.44
PRK06185	407	hypothetical protein; Provisional	97.43
PRK10015	429	oxidoreductase; Provisional	97.43
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	97.42
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	97.41
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	97.41
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	97.4
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	97.39
PRK09897	534	hypothetical protein; Provisional	97.37
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	97.37
PRK13748	561	putative mercuric reductase; Provisional	97.36
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	97.35
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	97.34
PRK06996	398	hypothetical protein; Provisional	97.33
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.32
PRK06847	375	hypothetical protein; Provisional	97.31
KOG2495|consensus	491		97.3
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	97.29
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	97.28
PRK10157	428	putative oxidoreductase FixC; Provisional	97.28
PRK11445	351	putative oxidoreductase; Provisional	97.27
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	97.27
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	97.27
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	97.25
KOG1336|consensus	478		97.25
PRK10015	429	oxidoreductase; Provisional	97.24
PRK14727	479	putative mercuric reductase; Provisional	97.23
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	97.22
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	97.22
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	97.2
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	97.19
PLN02546	558	glutathione reductase	97.17
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	97.16
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	97.16
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	97.15
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	97.12
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	97.12
PLN02697	529	lycopene epsilon cyclase	97.11
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	97.11
PRK06567	1028	putative bifunctional glutamate synthase subunit b	97.11
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	97.1
PRK13984	604	putative oxidoreductase; Provisional	97.1
PTZ00058	561	glutathione reductase; Provisional	97.1
TIGR02053	463	MerA mercuric reductase. This model represents the	97.09
PLN02985	514	squalene monooxygenase	97.09
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	97.09
PRK05257	494	malate:quinone oxidoreductase; Validated	97.09
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	97.07
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	97.07
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	97.06
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	97.05
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	97.05
PRK08294	634	phenol 2-monooxygenase; Provisional	97.05
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	97.04
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	97.03
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	96.99
PRK13977	576	myosin-cross-reactive antigen; Provisional	96.99
COG0695	80	GrxC Glutaredoxin and related proteins [Posttransl	96.98
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	96.97
TIGR00275	400	flavoprotein, HI0933 family. The model when search	96.97
PTZ00062	204	glutaredoxin; Provisional	96.97
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	96.96
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	96.96
PRK08401	466	L-aspartate oxidase; Provisional	96.96
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	96.92
PTZ00052	499	thioredoxin reductase; Provisional	96.92
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	96.92
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	96.91
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	96.91
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	96.88
PTZ00383	497	malate:quinone oxidoreductase; Provisional	96.88
PLN02661	357	Putative thiazole synthesis	96.87
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	96.86
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	96.85
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	96.85
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	96.84
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	96.84
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	96.83
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	96.81
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	96.79
PRK07121	492	hypothetical protein; Validated	96.79
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	96.78
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	96.76
KOG0404|consensus	322		96.76
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	96.75
PRK08274	466	tricarballylate dehydrogenase; Validated	96.75
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	96.65
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	96.64
TIGR02190	79	GlrX-dom Glutaredoxin-family domain. This C-termin	96.64
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	96.63
PRK06184	502	hypothetical protein; Provisional	96.63
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	96.61
cd03419	82	GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h	96.61
PRK06834	488	hypothetical protein; Provisional	96.59
PRK13339	497	malate:quinone oxidoreductase; Reviewed	96.54
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	96.54
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	96.53
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	96.46
PRK07190	487	hypothetical protein; Provisional	96.45
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	96.41
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	96.4
PRK08244	493	hypothetical protein; Provisional	96.38
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	96.38
PRK07846	451	mycothione reductase; Reviewed	96.37
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	96.37
PRK10329	81	glutaredoxin-like protein; Provisional	96.37
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	96.35
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	96.35
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	96.34
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	96.33
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	96.32
PRK08275	554	putative oxidoreductase; Provisional	96.29
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.25
PRK10638	83	glutaredoxin 3; Provisional	96.21
cd03029	72	GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb	96.17
cd03027	73	GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg	96.17
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	96.16
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	96.1
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	96.07
PRK09077	536	L-aspartate oxidase; Provisional	96.04
PTZ00153	659	lipoamide dehydrogenase; Provisional	96.02
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	96.01
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	95.99
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	95.98
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	95.95
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	95.94
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	95.94
cd03418	75	GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b	95.92
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	95.9
TIGR02183	86	GRXA Glutaredoxin, GrxA family. This model include	95.88
PRK06175	433	L-aspartate oxidase; Provisional	95.87
TIGR02180	84	GRX_euk Glutaredoxin. This model represents eukary	95.84
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	95.83
PLN02464	627	glycerol-3-phosphate dehydrogenase	95.83
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	95.83
PRK08401	466	L-aspartate oxidase; Provisional	95.79
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	95.77
cd02066	72	GRX_family Glutaredoxin (GRX) family; composed of	95.76
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	95.75
PTZ00367	567	squalene epoxidase; Provisional	95.71
PF00462	60	Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl	95.69
PRK07804	541	L-aspartate oxidase; Provisional	95.66
KOG1298|consensus	509		95.65
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	95.64
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	95.57
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	95.55
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	95.52
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	95.52
KOG0405|consensus	478		95.52
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	95.5
KOG2614|consensus	420		95.46
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	95.44
PLN02815	594	L-aspartate oxidase	95.42
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	95.39
KOG2311|consensus	679		95.32
TIGR02194	72	GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red	95.29
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	95.23
PRK06753	373	hypothetical protein; Provisional	95.07
PRK11200	85	grxA glutaredoxin 1; Provisional	95.04
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	95.0
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	95.0
PRK11883	451	protoporphyrinogen oxidase; Reviewed	94.97
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	94.92
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	94.9
PRK07045	388	putative monooxygenase; Reviewed	94.87
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.84
KOG1335|consensus	506		94.77
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	94.73
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	94.68
PRK09126	392	hypothetical protein; Provisional	94.65
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	94.65
TIGR02181	79	GRX_bact Glutaredoxin, GrxC family. This family of	94.61
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	94.56
PRK08071	510	L-aspartate oxidase; Provisional	94.54
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	94.51
PRK07233	434	hypothetical protein; Provisional	94.45
KOG0029|consensus	501		94.43
KOG2820|consensus	399		94.41
PRK07395	553	L-aspartate oxidase; Provisional	94.37
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	94.35
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	94.31
PRK07588	391	hypothetical protein; Provisional	94.31
PRK11445	351	putative oxidoreductase; Provisional	94.3
PRK08013	400	oxidoreductase; Provisional	94.28
PRK07538	413	hypothetical protein; Provisional	94.25
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	94.24
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	94.24
PRK08163	396	salicylate hydroxylase; Provisional	94.23
COG3349	485	Uncharacterized conserved protein [Function unknow	94.14
PRK07236	386	hypothetical protein; Provisional	94.13
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	94.13
KOG0029|consensus	501		94.12
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	94.11
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	94.1
KOG4716|consensus	503		94.1
PRK11883	451	protoporphyrinogen oxidase; Reviewed	94.09
PRK07233	434	hypothetical protein; Provisional	94.08
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	94.07
PLN02268	435	probable polyamine oxidase	94.06
KOG1800|consensus	468		94.06
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	94.04
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	94.03
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	94.02
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	94.01
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	94.01
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	93.99
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	93.99
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	93.98
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	93.95
PRK07208	479	hypothetical protein; Provisional	93.94
KOG0685|consensus	498		93.92
PRK08274	466	tricarballylate dehydrogenase; Validated	93.89
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	93.87
PRK06475	400	salicylate hydroxylase; Provisional	93.84
PRK06185	407	hypothetical protein; Provisional	93.77
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	93.75
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	93.74
PRK07121	492	hypothetical protein; Validated	93.71
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	93.69
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	93.67
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	93.66
PRK05868	372	hypothetical protein; Validated	93.66
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	93.66
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	93.65
PLN02576	496	protoporphyrinogen oxidase	93.62
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	93.56
KOG2404|consensus	477		93.54
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	93.54
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	93.51
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	93.51
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	93.49
PRK12759	410	bifunctional gluaredoxin/ribonucleoside-diphosphat	93.47
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	93.43
PLN02268	435	probable polyamine oxidase	93.43
PRK08275	554	putative oxidoreductase; Provisional	93.42
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	93.4
KOG2415|consensus	621		93.39
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	93.36
COG3349	485	Uncharacterized conserved protein [Function unknow	93.32
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	93.29
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	93.2
PRK06719	157	precorrin-2 dehydrogenase; Validated	93.19
PRK07208	479	hypothetical protein; Provisional	93.15
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	93.08
PRK06126	545	hypothetical protein; Provisional	93.06
PRK07512	513	L-aspartate oxidase; Provisional	92.95
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	92.9
KOG1346|consensus	659		92.84
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	92.77
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	92.73
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	92.69
PLN02985	514	squalene monooxygenase	92.68
PRK11728	393	hydroxyglutarate oxidase; Provisional	92.64
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	92.64
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	92.64
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	92.6
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	92.6
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	92.57
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	92.55
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	92.52
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	92.5
PRK07804	541	L-aspartate oxidase; Provisional	92.49
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	92.48
PRK12839	572	hypothetical protein; Provisional	92.45
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	92.44
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	92.43
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	92.38
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	92.3
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	92.28
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	92.27
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	92.26
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	92.24
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	92.23
PRK08132	547	FAD-dependent oxidoreductase; Provisional	92.22
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	92.16
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	92.15
KOG3851|consensus	446		92.14

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=100.00  E-value=4.5e-69  Score=559.53  Aligned_cols=418  Identities=23%  Similarity=0.296  Sum_probs=360.0

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccc-------cccccccccccccchhhccc-cccc-ccccccCHH
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSF-------RKKRRLYYPVAMSDLELEQD-STSA-LNVTIRNWN  158 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~-------~~~~l~~~~~~i~~~~~~~~-~~~~-~~~~~~~~~  158 (535)
                      .+|++|||+||+|..+|.++...+.+|.|+|+...+++       .|.+.+.+...+........ .+.. .....+||.
T Consensus         4 ~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~~id~~   83 (454)
T COG1249           4 EYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVPKIDFE   83 (454)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCCCcCHH
Confidence            47899999999999999999888888999999964332       22222222111111111111 1111 112268999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEce---eEEEcceEEEeeCceecC-CCCC---Cceech
Q psy14461        159 AATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSN---RSVTGFNFLLAVERRCLP-EPRN---SALISA  231 (535)
Q Consensus       159 ~l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~---~~~~~d~lViATGs~p~~-~i~G---~~v~~~  231 (535)
                      ++++++++....+...+..+++..+|+++.|+++|.++++|.+.+   +++++|++||||||+|.. +++|   ..++++
T Consensus        84 ~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~~~~~v~V~~~~~~~~~a~~iiIATGS~p~~~~~~~~~~~~~~~s  163 (454)
T COG1249          84 KLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVDPHTVEVTGEDKETITADNIIIATGSRPRIPPGPGIDGARILDS  163 (454)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEECCCCEEEEcCCCceEEEeCEEEEcCCCCCcCCCCCCCCCCeEEec
Confidence            999999998888888899999999999999999999999999987   799999999999999999 8777   558899


Q ss_pred             hhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEe
Q psy14461        232 DDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISS  309 (535)
Q Consensus       232 ~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~  309 (535)
                      ++.+.+.+.|++++|||||++|+|+|..|+++|.+||++++ ++++|.+|+++++.+.+.|++.|+++ +++.+++++..
T Consensus       164 ~~~l~~~~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~~D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~  243 (454)
T COG1249         164 SDALFLLELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPGEDPEISKELTKQLEKGGVKILLNTKVTAVEKK  243 (454)
T ss_pred             hhhcccccCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCcCCHHHHHHHHHHHHhCCeEEEccceEEEEEec
Confidence            99887779999999999999999999999999999999999 99999999999999999999999999 99999999876


Q ss_pred             CCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCCCcH
Q psy14461        310 FDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNA  389 (535)
Q Consensus       310 ~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~~~~  389 (535)
                      + +.+.++++   +|+..++++|.+++|+|++||++.|++++.|++++++|+|.||++++|++|+|||+|||+ ++++++
T Consensus       244 ~-~~v~v~~~---~g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD~~~~Tnvp~IyA~GDV~-~~~~La  318 (454)
T COG1249         244 D-DGVLVTLE---DGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVDDQMTTNVPGIYAIGDVI-GGPMLA  318 (454)
T ss_pred             C-CeEEEEEe---cCCCCEEEeeEEEEccCCccCCCCCChhhcCceECCCCCEEeCCccccCCCCEEEeeccC-CCcccH
Confidence            3 33777775   454337899999999999999999999999999999999999988888999999999999 888999


Q ss_pred             HHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcchhh
Q psy14461        390 SMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVK  469 (535)
Q Consensus       390 ~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (535)
                      |.|.+||++||+||++......++..+|+++|++|++|+||+||+||++++.  ++++...++..+.++. ..       
T Consensus       319 h~A~~eg~iaa~~i~g~~~~~~d~~~iP~~ift~Peia~VGlte~ea~~~g~--~~~~~~~~f~~~~ra~-~~-------  388 (454)
T COG1249         319 HVAMAEGRIAAENIAGGKRTPIDYRLIPSVVFTDPEIASVGLTEEEAKEAGI--DYKVGKFPFAANGRAI-TM-------  388 (454)
T ss_pred             hHHHHHHHHHHHHHhCCCCCcCcccCCCEEEECCCcceeeeCCHHHHHhcCC--ceEEEEeecccchhHH-hc-------
Confidence            9999999999999998555677899999999999999999999999999966  6888888888776654 21       


Q ss_pred             hhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461        470 LVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT  535 (535)
Q Consensus       470 ~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~  535 (535)
                                     +++.||+|+++|++|++|||+|++|++|.|||++++++|++++|.+++.++
T Consensus       389 ---------------~~~~G~~Klv~d~~t~~IlGahivg~~A~ElI~~~~~a~~~g~t~~~~~~~  439 (454)
T COG1249         389 ---------------GETDGFVKLVVDKETGRILGAHIVGPGASELINEIALAIEMGATAEDLALT  439 (454)
T ss_pred             ---------------cCCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCcHHHHhcC
Confidence                           257899999999999999999999999999999999999999999999854

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=100.00  E-value=7.7e-63  Score=522.79  Aligned_cols=418  Identities=23%  Similarity=0.340  Sum_probs=348.7

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccc---cccccc----cccccchhhccccc--ccccccccCHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRK---KRRLYY----PVAMSDLELEQDST--SALNVTIRNWNA  159 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~---~~l~~~----~~~i~~~~~~~~~~--~~~~~~~~~~~~  159 (535)
                      +||+|||+||+|+.+|+++...+.+|+|||++. +++..   +-+|..    +..+.......+.+  .......++|.+
T Consensus         3 yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~   81 (450)
T TIGR01421         3 YDYLVIGGGSGGIASARRAAEHGAKALLVEAKK-LGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTFNWPE   81 (450)
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEecccc-cccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCccCHHH
Confidence            689999999999999999999999999999964 33221   112211    00000000011111  111122579999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEceeEEEcceEEEeeCceecC--CCCC-CceechhhHHh
Q psy14461        160 ATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAVERRCLP--EPRN-SALISADDLFR  236 (535)
Q Consensus       160 l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~~~~~~d~lViATGs~p~~--~i~G-~~v~~~~~~~~  236 (535)
                      +.++++++++++...+...+++.||+++.|++.+.++++|.+++..+.||+||||||++|+.  ++|| +..+++++++.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v~~~~~~~d~vIiAtGs~p~~p~~i~g~~~~~~~~~~~~  161 (450)
T TIGR01421        82 LKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARFTKDGTVEVNGRDYTAPHILIATGGKPSFPENIPGAELGTDSDGFFA  161 (450)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEECCEEEEeCEEEEecCCCCCCCCCCCCCceeEcHHHhhC
Confidence            99999999999988888889999999999999998889998877789999999999999976  4788 65678899988


Q ss_pred             ccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcE
Q psy14461        237 LGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMK  314 (535)
Q Consensus       237 ~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~  314 (535)
                      +...|++++|||||++|+|+|..|+++|.+||++++ +++++.+|+++.+.+++.|+++||++ +++.+++++.+.++.+
T Consensus       162 ~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~  241 (450)
T TIGR01421       162 LEELPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRSFDSMISETITEEYEKEGINVHKLSKPVKVEKTVEGKL  241 (450)
T ss_pred             ccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCcccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceE
Confidence            888899999999999999999999999999999999 99999999999999999999999999 9999999986533335


Q ss_pred             EEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCCCcHHHHHH
Q psy14461        315 GVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAI  394 (535)
Q Consensus       315 ~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~~~~~~A~~  394 (535)
                      .+++.   +|+ .++++|.|++++|++||++.+.++..+++++++|+|.||+++||++|+|||+|||+ +.+.+++.|.+
T Consensus       242 ~v~~~---~g~-~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~T~~p~IyAiGD~~-~~~~~~~~A~~  316 (450)
T TIGR01421       242 VIHFE---DGK-SIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDEYQNTNVPGIYALGDVV-GKVELTPVAIA  316 (450)
T ss_pred             EEEEC---CCc-EEEEcCEEEEeeCCCcCcccCCccccCcEECCCCcEEeCCCCcCCCCCEEEEEecC-CCcccHHHHHH
Confidence            56663   552 37999999999999999998777889999999999999999999999999999999 88999999999


Q ss_pred             HHHHHHHHHhCCC-CCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcchhhhhhc
Q psy14461        395 SARLIIERLYGMQ-DQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVCL  473 (535)
Q Consensus       395 ~g~~aa~~i~g~~-~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  473 (535)
                      ||++||+||++.. ....++..+|+++|++|++|+||+||+||+++++.+.+.+...++.+..++. ..           
T Consensus       317 ~g~~aa~~i~~~~~~~~~~~~~~p~~~f~~p~ia~vGlte~~a~~~~g~~~~~~~~~~~~~~~~~~-~~-----------  384 (450)
T TIGR01421       317 AGRKLSERLFNGKTDDKLDYNNVPTVVFSHPPIGTIGLTEKEAIEKYGKENIKVYNSSFTPMYYAM-TS-----------  384 (450)
T ss_pred             HHHHHHHHHhcCCCCCccCcccCCeEEeCCCceEEEeCCHHHHHhhcCCCCEEEEEEEcChhHHHH-hc-----------
Confidence            9999999999754 3456788899999999999999999999998755445777766666544432 11           


Q ss_pred             cCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461        474 KGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT  535 (535)
Q Consensus       474 ~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~  535 (535)
                                 +.+.||+||++|++|++|||+|++|++|+|+|+.+++||++++|++||.++
T Consensus       385 -----------~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~  435 (450)
T TIGR01421       385 -----------EKQKCRMKLVCAGKEEKVVGLHGIGDGVDEMLQGFAVAIKMGATKADFDNT  435 (450)
T ss_pred             -----------CCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhc
Confidence                       257899999999999999999999999999999999999999999999864

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=100.00  E-value=7.6e-63  Score=524.69  Aligned_cols=417  Identities=22%  Similarity=0.263  Sum_probs=345.5

Q ss_pred             EEEEeeCCccHHHHHHHHHhhC-CCeEEEEecC--------Cccccc-------ccccccccccccchhhccccccc---
Q psy14461         89 LYLDRIGDEGILLEEELKRQTN-QRRDELQERG--------SHLSFR-------KKRRLYYPVAMSDLELEQDSTSA---  149 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~-~~~V~lie~~--------~~~~~~-------~~~l~~~~~~i~~~~~~~~~~~~---  149 (535)
                      +|++|||+|++|..+|++.... +.+|+|||++        ..+++.       |.+.+.....+.....+...+..   
T Consensus         4 ~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~gi~~~   83 (486)
T TIGR01423         4 FDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFGWEFD   83 (486)
T ss_pred             cCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhccCeecc
Confidence            6899999999999999999885 8999999984        233322       22222111111111111111111   


Q ss_pred             ccccccCHHHHHHHHHHHHHHHHHHHHHHHHh-cCcEEEEeEEEEecCCEEEEce---------eEEEcceEEEeeCcee
Q psy14461        150 LNVTIRNWNAATKLIKRFCIRAKNDSMRELKA-LGIDIVRTAAAFTNPHTIKLSN---------RSVTGFNFLLAVERRC  219 (535)
Q Consensus       150 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~gV~~~~g~~~~~~~~~v~~~~---------~~~~~d~lViATGs~p  219 (535)
                      .....+||.++.+++++.+.+++..+...++. .||+++.|++.+.++++|.+..         .++.||+||||||++|
T Consensus        84 ~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a~f~~~~~v~V~~~~~~~~~~~~~~~~d~lIIATGs~p  163 (486)
T TIGR01423        84 RSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWGALEDKNVVLVRESADPKSAVKERLQAEHILLATGSWP  163 (486)
T ss_pred             CCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEEEccCCEEEEeeccCCCCCcceEEECCEEEEecCCCC
Confidence            01346799999999999999998888888887 4999999999999999998852         4799999999999999


Q ss_pred             cC-CCCC-CceechhhHHhccCCCCcEEEECCChHHHHHHHHHHhC---CCcEEEEEc-CcCCccCcHHHHHHHHHhhhc
Q psy14461        220 LP-EPRN-SALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFL---GVPVTLVYS-RRLLKHFDQEMVRILLSSLTK  293 (535)
Q Consensus       220 ~~-~i~G-~~v~~~~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~---g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~  293 (535)
                      .. ++|| +.++++++++.+...|++++|||||++|+|+|..|.++   |.+||++++ +++++.+|+++.+.+.+.|++
T Consensus       164 ~~p~i~G~~~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~~~d~~~~~~l~~~L~~  243 (486)
T TIGR01423       164 QMLGIPGIEHCISSNEAFYLDEPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRGFDSTLRKELTKQLRA  243 (486)
T ss_pred             CCCCCCChhheechhhhhccccCCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccccccCHHHHHHHHHHHHH
Confidence            88 8999 77889999988888899999999999999999887665   999999999 999999999999999999999


Q ss_pred             CCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCC
Q psy14461        294 AGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSV  372 (535)
Q Consensus       294 ~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~  372 (535)
                      +||++ +++.+++++..+++...+++.   +|+  ++++|.+++|+|++||++.++++.++++++++|+|.||+++||+.
T Consensus       244 ~GI~i~~~~~v~~i~~~~~~~~~v~~~---~g~--~i~~D~vl~a~G~~Pn~~~l~l~~~gl~~~~~G~I~Vd~~l~Ts~  318 (486)
T TIGR01423       244 NGINIMTNENPAKVTLNADGSKHVTFE---SGK--TLDVDVVMMAIGRVPRTQTLQLDKVGVELTKKGAIQVDEFSRTNV  318 (486)
T ss_pred             cCCEEEcCCEEEEEEEcCCceEEEEEc---CCC--EEEcCEEEEeeCCCcCcccCCchhhCceECCCCCEecCCCCcCCC
Confidence            99999 999999998653333556663   566  799999999999999999887788899999999999999999999


Q ss_pred             CCEEEeCCcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEec
Q psy14461        373 GNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSY  452 (535)
Q Consensus       373 ~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~  452 (535)
                      |||||+|||+ +.+++++.|.+||++||+||++......++..+|+++|+.|++|+||+||+||++.+.  ++.+....+
T Consensus       319 ~~IyA~GDv~-~~~~l~~~A~~qG~~aa~ni~g~~~~~~~~~~vp~~vft~peia~vGlte~eA~~~~~--~~~~~~~~~  395 (486)
T TIGR01423       319 PNIYAIGDVT-DRVMLTPVAINEGAAFVDTVFGNKPRKTDHTRVASAVFSIPPIGTCGLVEEDAAKKFE--KVAVYESSF  395 (486)
T ss_pred             CCEEEeeecC-CCcccHHHHHHHHHHHHHHHhCCCCcccCCCCCCEEEeCCCceEEeeCCHHHHHhcCC--ceEEEEEee
Confidence            9999999999 8899999999999999999998654556777899999999999999999999998733  566665555


Q ss_pred             CCcccccCCCCCcchhhhhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHH
Q psy14461        453 PTFDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAEL  532 (535)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l  532 (535)
                      ..+.+.. +...                     .+.||+||++|++|++|||+|++|++|+|+|+.+++||++++|++||
T Consensus       396 ~~~~~~~-~~~~---------------------~~~g~~Klv~d~~~~~iLGa~ivg~~a~elI~~~~~ai~~~~t~~dl  453 (486)
T TIGR01423       396 TPLMHNI-SGSK---------------------YKKFVAKIVTNHADGTVLGVHLLGDSSPEIIQAVGICLKLNAKISDF  453 (486)
T ss_pred             Cchhhhh-ccCc---------------------cCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHH
Confidence            4433322 2110                     23799999999999999999999999999999999999999999999


Q ss_pred             cCC
Q psy14461        533 DGT  535 (535)
Q Consensus       533 ~~~  535 (535)
                      .++
T Consensus       454 ~~~  456 (486)
T TIGR01423       454 YNT  456 (486)
T ss_pred             hhc
Confidence            864

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=100.00  E-value=2.7e-62  Score=518.99  Aligned_cols=415  Identities=23%  Similarity=0.318  Sum_probs=348.5

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccccc---cccc----ccccccchhhccccccc-ccccccCHHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKK---RRLY----YPVAMSDLELEQDSTSA-LNVTIRNWNAA  160 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~---~l~~----~~~~i~~~~~~~~~~~~-~~~~~~~~~~l  160 (535)
                      +|++|||+||+|+.+|+++...+.+|+|+|++ .+++...   -+|.    +.........+.+.+.. .....++|.++
T Consensus         3 yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~   81 (446)
T TIGR01424         3 YDLFVIGAGSGGVRAARLAANHGAKVAIAEEP-RVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFDWKKL   81 (446)
T ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecC-ccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcCHHHH
Confidence            68999999999999999999999999999995 3433210   1221    10000011111122111 12346899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEc--eeEEEcceEEEeeCceecC-CCCC-CceechhhHHh
Q psy14461        161 TKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLS--NRSVTGFNFLLAVERRCLP-EPRN-SALISADDLFR  236 (535)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~--~~~~~~d~lViATGs~p~~-~i~G-~~v~~~~~~~~  236 (535)
                      .+++++.+.++...++..+++.||+++.+++.+.+++++.+.  +.++.||+||||||++|.. ++|| +..+++++++.
T Consensus        82 ~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~v~~~~v~v~~~g~~~~~d~lIiATGs~p~~p~i~G~~~~~~~~~~~~  161 (446)
T TIGR01424        82 LQKKDDEIARLSGLYKRLLANAGVELLEGRARLVGPNTVEVLQDGTTYTAKKILIAVGGRPQKPNLPGHELGITSNEAFH  161 (446)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEecCCeEEEcCEEEEecCCcCCCCCCCCccceechHHhhc
Confidence            999999999998888889999999999999999988887773  3679999999999999988 8999 66678888888


Q ss_pred             ccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcE
Q psy14461        237 LGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMK  314 (535)
Q Consensus       237 ~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~  314 (535)
                      +...+++++|||+|++|+|+|..|++.|.+|+++++ +.+++.+++++.+.+.+.|+++||++ +++++++++.. ++.+
T Consensus       162 l~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~-~~~~  240 (446)
T TIGR01424       162 LPTLPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILRGFDDDMRALLARNMEGRGIRIHPQTSLTSITKT-DDGL  240 (446)
T ss_pred             ccccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCcccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEc-CCeE
Confidence            888899999999999999999999999999999999 88899999999999999999999999 99999999865 3445


Q ss_pred             EEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCCCcHHHHHH
Q psy14461        315 GVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAI  394 (535)
Q Consensus       315 ~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~~~~~~A~~  394 (535)
                      .+++.   +|+  ++++|.+++|+|++||++.++++..+++++++|+|.||+++||+.|+|||+|||+ +.+.+++.|.+
T Consensus       241 ~v~~~---~g~--~i~~D~viva~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~IyA~GD~~-~~~~l~~~A~~  314 (446)
T TIGR01424       241 KVTLS---HGE--EIVADVVLFATGRSPNTKGLGLEAAGVELNDAGAIAVDEYSRTSIPSIYAVGDVT-DRINLTPVAIM  314 (446)
T ss_pred             EEEEc---CCc--EeecCEEEEeeCCCcCCCcCCccccCeEECCCCcEEeCCCCccCCCCEEEeeccC-CCccchhHHHH
Confidence            56653   566  7999999999999999998777888999999999999999999999999999999 88899999999


Q ss_pred             HHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcchhhhhhcc
Q psy14461        395 SARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVCLK  474 (535)
Q Consensus       395 ~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  474 (535)
                      ||++||+||++....++++..+|+++|+.|++|+||+||+||++.++. ++.+....+....+.. ..            
T Consensus       315 ~g~~~a~~i~~~~~~~~~~~~~p~~if~~p~ia~vG~te~~a~~~~~~-~~~~~~~~~~~~~~~~-~~------------  380 (446)
T TIGR01424       315 EATCFANTEFGNNPTKFDHDLIATAVFSQPPLGTVGLTEEEAREKFTG-DILVYRAGFRPMKNTF-SG------------  380 (446)
T ss_pred             HHHHHHHHHhcCCCCccCcCCCCeEEeCCchhEEEECCHHHHHhhcCC-CEEEEEEecCchHhHh-hc------------
Confidence            999999999986555567788999999999999999999999988432 6777766665544332 11            


Q ss_pred             CCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461        475 GGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT  535 (535)
Q Consensus       475 ~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~  535 (535)
                                +.++||+||++|++|++|||+|++|++|+|+|+.+++||++++|++||.++
T Consensus       381 ----------~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~  431 (446)
T TIGR01424       381 ----------RQEKTLMKLVVDEKDDKVLGAHMVGPDAAEIIQGIAIALKMGATKADFDST  431 (446)
T ss_pred             ----------CCCceEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhc
Confidence                      246899999999999999999999999999999999999999999999864

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK06116 glutathione reductase; Validated

Probab=100.00  E-value=2.9e-62  Score=519.99  Aligned_cols=417  Identities=25%  Similarity=0.359  Sum_probs=350.1

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccc---ccccc----ccccccchhhc-ccccc-cccccccCHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRK---KRRLY----YPVAMSDLELE-QDSTS-ALNVTIRNWNA  159 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~---~~l~~----~~~~i~~~~~~-~~~~~-~~~~~~~~~~~  159 (535)
                      ++++|||+||+|+.+|+++...+.+|+|||++. +++..   +-+|.    +...+...... .+.+. ......++|.+
T Consensus         5 ~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~~-~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   83 (450)
T PRK06116          5 YDLIVIGGGSGGIASANRAAMYGAKVALIEAKR-LGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENKFDWAK   83 (450)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccc-hhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCCcCHHH
Confidence            589999999999999999999999999999963 32211   01221    10001111111 00111 11234679999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEceeEEEcceEEEeeCceecC-CCCC-CceechhhHHhc
Q psy14461        160 ATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAVERRCLP-EPRN-SALISADDLFRL  237 (535)
Q Consensus       160 l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~~~~~~d~lViATGs~p~~-~i~G-~~v~~~~~~~~~  237 (535)
                      +.+++++.++++...+...+++.||+++.|++.++++++|++++.++.||+||||||++|.. ++|| +.++++++++.+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~v~~~~v~~~g~~~~~d~lViATGs~p~~p~i~g~~~~~~~~~~~~~  163 (450)
T PRK06116         84 LIANRDAYIDRLHGSYRNGLENNGVDLIEGFARFVDAHTVEVNGERYTADHILIATGGRPSIPDIPGAEYGITSDGFFAL  163 (450)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEECCEEEEeCEEEEecCCCCCCCCCCCcceeEchhHhhCc
Confidence            99999988888888888888899999999999999999999966789999999999999988 8999 778889999888


Q ss_pred             cCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEE
Q psy14461        238 GAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKG  315 (535)
Q Consensus       238 ~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~  315 (535)
                      ...+++|+|||+|++|+|+|..|++.|.+||++++ +.+++.+++++.+.+.+.|+++||++ .++++++++.++++.+.
T Consensus       164 ~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~  243 (450)
T PRK06116        164 EELPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRGFDPDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLT  243 (450)
T ss_pred             cccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCccccCHHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEE
Confidence            88899999999999999999999999999999999 88899999999999999999999999 99999999875333356


Q ss_pred             EEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCCCcHHHHHHH
Q psy14461        316 VRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAIS  395 (535)
Q Consensus       316 v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~~~~~~A~~~  395 (535)
                      +++.   +|+  ++++|.|++|+|++||++.+.++..+++++++|+|.||+++||++|+|||+|||+ +.+.+++.|++|
T Consensus       244 v~~~---~g~--~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~IyA~GD~~-~~~~~~~~A~~~  317 (450)
T PRK06116        244 LTLE---DGE--TLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDEYQNTNVPGIYAVGDVT-GRVELTPVAIAA  317 (450)
T ss_pred             EEEc---CCc--EEEeCEEEEeeCCCcCCCCCCchhcCceECCCCcEecCCCCCcCCCCEEEEeecC-CCcCcHHHHHHH
Confidence            6663   676  7999999999999999998766888999999999999999999999999999999 888999999999


Q ss_pred             HHHHHHHHhCCCC-CCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcchhhhhhcc
Q psy14461        396 ARLIIERLYGMQD-QLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVCLK  474 (535)
Q Consensus       396 g~~aa~~i~g~~~-~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  474 (535)
                      |++||+||++... ...++..+|+++|+.|++|+||+||+||++.++...+.+...++....+.. ..            
T Consensus       318 g~~aa~~i~g~~~~~~~~~~~~p~~if~~p~~a~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~-~~------------  384 (450)
T PRK06116        318 GRRLSERLFNNKPDEKLDYSNIPTVVFSHPPIGTVGLTEEEAREQYGEDNVKVYRSSFTPMYTAL-TG------------  384 (450)
T ss_pred             HHHHHHHHhCCCCCCcCCcCCCCeEEeCCCccEEeeCCHHHHHHhCCCCcEEEEEEecchhHHHH-hc------------
Confidence            9999999998654 456788999999999999999999999999855223777766665544432 11            


Q ss_pred             CCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461        475 GGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT  535 (535)
Q Consensus       475 ~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~  535 (535)
                                +.++||+||++|++|++|||+|++|++|+|+|+.+++||++++|++||.++
T Consensus       385 ----------~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~  435 (450)
T PRK06116        385 ----------HRQPCLMKLVVVGKEEKVVGLHGIGFGADEMIQGFAVAIKMGATKADFDNT  435 (450)
T ss_pred             ----------CCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcc
Confidence                      257899999999999999999999999999999999999999999999864

>PLN02546 glutathione reductase

Probab=100.00  E-value=1.7e-62  Score=527.45  Aligned_cols=416  Identities=24%  Similarity=0.343  Sum_probs=349.6

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecC---------Cccc-------ccccccccccccccchhhccc--ccccc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERG---------SHLS-------FRKKRRLYYPVAMSDLELEQD--STSAL  150 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~---------~~~~-------~~~~~l~~~~~~i~~~~~~~~--~~~~~  150 (535)
                      +|++|||+|++|+.+|+++...+.+|+|||+.         ..++       +.|.+.+.+...+........  +....
T Consensus        80 yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~~~~  159 (558)
T PLN02546         80 FDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGWKYE  159 (558)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCcccC
Confidence            68999999999999999999999999999961         1222       222222222111111111111  11111


Q ss_pred             cccccCHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEceeEEEcceEEEeeCceecC-CCCC-Cce
Q psy14461        151 NVTIRNWNAATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAVERRCLP-EPRN-SAL  228 (535)
Q Consensus       151 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~~~~~~d~lViATGs~p~~-~i~G-~~v  228 (535)
                      ....+||.++.+++++.++++...+...+++.||+++.|++++++.++|.+++.++.||+||||||++|.. ++|| +.+
T Consensus       160 ~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G~a~~vd~~~V~v~G~~~~~D~LVIATGs~p~~P~IpG~~~v  239 (558)
T PLN02546        160 TEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEGRGKIVDPHTVDVDGKLYTARNILIAVGGRPFIPDIPGIEHA  239 (558)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEccCCEEEECCEEEECCEEEEeCCCCCCCCCCCChhhc
Confidence            13468999999999999999988899999999999999999999999999877789999999999999998 8999 778


Q ss_pred             echhhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEE
Q psy14461        229 ISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKV  306 (535)
Q Consensus       229 ~~~~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i  306 (535)
                      +++++++.+...+++|+|||||++|+|+|..|+++|.+||++++ +.+++.+++++.+.+++.|+++||++ ++..++++
T Consensus       240 ~~~~~~l~~~~~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~~d~~~~~~l~~~L~~~GV~i~~~~~v~~i  319 (558)
T PLN02546        240 IDSDAALDLPSKPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRGFDEEVRDFVAEQMSLRGIEFHTEESPQAI  319 (558)
T ss_pred             cCHHHHHhccccCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccccccCHHHHHHHHHHHHHCCcEEEeCCEEEEE
Confidence            89999998887899999999999999999999999999999999 89999999999999999999999999 99999999


Q ss_pred             EEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCC
Q psy14461        307 ISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKP  386 (535)
Q Consensus       307 ~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~  386 (535)
                      ....++.+.+..   .+++  ...+|.|++++|++||++++.++.++++++++|+|.||+++||++|+|||+|||+ +.+
T Consensus       320 ~~~~~g~v~v~~---~~g~--~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G~I~VD~~l~Ts~p~IYAaGDv~-~~~  393 (558)
T PLN02546        320 IKSADGSLSLKT---NKGT--VEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVDEYSRTSVPSIWAVGDVT-DRI  393 (558)
T ss_pred             EEcCCCEEEEEE---CCeE--EEecCEEEEeeccccCCCcCChhhcCCcCCCCCcEeECCCceeCCCCEEEeeccC-CCc
Confidence            764334444443   2343  4558999999999999998767888999998999999999999999999999999 888


Q ss_pred             CcHHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcc
Q psy14461        387 NNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPEN  466 (535)
Q Consensus       387 ~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  466 (535)
                      .+++.|.+||+++|+||++......++..+|+++|+.|++|+||+||+||++.++  ++++...++....+.+ ...   
T Consensus       394 ~l~~~A~~~g~~~a~~i~g~~~~~~~~~~vp~~vft~Peia~VGlte~eA~~~g~--~~~~~~~~~~~~~~~~-~~~---  467 (558)
T PLN02546        394 NLTPVALMEGGALAKTLFGNEPTKPDYRAVPSAVFSQPPIGQVGLTEEQAIEEYG--DVDVFTANFRPLKATL-SGL---  467 (558)
T ss_pred             ccHHHHHHHHHHHHHHHcCCCCCcCCCCCCCEEEeCCchHhhccCCHHHHHHcCC--CeEEEEEecccchhhh-hCC---
Confidence            9999999999999999998655456788899999999999999999999999865  6887777776544333 221   


Q ss_pred             hhhhhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461        467 FVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT  535 (535)
Q Consensus       467 ~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~  535 (535)
                                         .+.||+||++|++|++|||+|++|++|.|+|+.+++||++++|++||.++
T Consensus       468 -------------------~~~g~~Klv~d~~t~~ILGa~ivG~~a~elI~~~a~ai~~~~t~~dl~~~  517 (558)
T PLN02546        468 -------------------PDRVFMKLIVCAKTNKVLGVHMCGEDAPEIIQGFAVAVKAGLTKADFDAT  517 (558)
T ss_pred             -------------------CCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhc
Confidence                               36899999999999999999999999999999999999999999999764

>PTZ00058 glutathione reductase; Provisional

Probab=100.00  E-value=1.9e-61  Score=519.01  Aligned_cols=420  Identities=21%  Similarity=0.345  Sum_probs=342.5

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccc-------cccccccccccccchhhcccccccccccccCHHHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSF-------RKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAAT  161 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~-------~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~  161 (535)
                      +|++|||+|++|+.+|++....+.+|+|||++. +++       .|.+.......+.........+.......+||..++
T Consensus        49 yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~~-~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~~~~d~~~~~  127 (561)
T PTZ00058         49 YDLIVIGGGSGGMAAARRAARNKAKVALVEKDY-LGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDTQFSFNLPLLV  127 (561)
T ss_pred             ccEEEECcCHHHHHHHHHHHHcCCeEEEEeccc-ccccccccCCCCCchhhhhcccHHHHHHHHhcCCCccCccCHHHHH
Confidence            689999999999999999999999999999973 322       222222221111111111111111112367999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEE-----------------------------ceeEEEcceEE
Q psy14461        162 KLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKL-----------------------------SNRSVTGFNFL  212 (535)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~-----------------------------~~~~~~~d~lV  212 (535)
                      +++++++.++...+...++..||+++.|++.+.++++|.+                             ++.+++||+||
T Consensus       128 ~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~i~ad~lV  207 (561)
T PTZ00058        128 ERRDKYIRRLNDIYRQNLKKDNVEYFEGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQVIEGKNIL  207 (561)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEecCCEEEeeccccccccccccccccceeeeccceecCCCcEEECCEEE
Confidence            9999999999888888899999999999999999888753                             22579999999


Q ss_pred             EeeCceecC-CCCC-CceechhhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHH
Q psy14461        213 LAVERRCLP-EPRN-SALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLS  289 (535)
Q Consensus       213 iATGs~p~~-~i~G-~~v~~~~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~  289 (535)
                      ||||++|.. ++|| +.++++++++.+.. +++|+|||||++|+|+|..|+++|.+||++++ +++++.+|+++.+.+++
T Consensus       208 IATGS~P~~P~IpG~~~v~ts~~~~~l~~-pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~~~d~~i~~~l~~  286 (561)
T PTZ00058        208 IAVGNKPIFPDVKGKEFTISSDDFFKIKE-AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLRKFDETIINELEN  286 (561)
T ss_pred             EecCCCCCCCCCCCceeEEEHHHHhhccC-CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecccccccCCHHHHHHHHH
Confidence            999999988 8999 66888999988766 89999999999999999999999999999999 99999999999999999


Q ss_pred             hhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCC
Q psy14461        290 SLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKD  368 (535)
Q Consensus       290 ~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~  368 (535)
                      .|+++||++ ++..+.+++.++++.+.+.+.   ++. .++++|.|++|+|++||++.++++..++. +++|+|.||+++
T Consensus       287 ~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~---~~~-~~i~aD~VlvA~Gr~Pn~~~L~l~~~~~~-~~~G~I~VDe~l  361 (561)
T PTZ00058        287 DMKKNNINIITHANVEEIEKVKEKNLTIYLS---DGR-KYEHFDYVIYCVGRSPNTEDLNLKALNIK-TPKGYIKVDDNQ  361 (561)
T ss_pred             HHHHCCCEEEeCCEEEEEEecCCCcEEEEEC---CCC-EEEECCEEEECcCCCCCccccCcccccee-cCCCeEEECcCC
Confidence            999999999 999999998653334555442   232 37999999999999999999877766665 458999999999


Q ss_pred             CcCCCCEEEeCCcCCC----------------------------------CCCcHHHHHHHHHHHHHHHhCCCCCCCCCC
Q psy14461        369 QTSVGNIFAVGGIVHG----------------------------------KPNNASMAAISARLIIERLYGMQDQLMDYS  414 (535)
Q Consensus       369 ~T~~~~IyA~GD~~~~----------------------------------~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~  414 (535)
                      ||+.|+|||+|||+ +                                  .+++++.|.+||++||.||+|......++.
T Consensus       362 qTs~p~IYA~GDv~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~ni~g~~~~~~~~~  440 (561)
T PTZ00058        362 RTSVKHIYAVGDCC-MVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLADRLFGPFSRTTNYK  440 (561)
T ss_pred             ccCCCCEEEeEecc-CccccccccccccccccccccccccccccccccccCcCchHHHHHHHHHHHHHHhCCCCcccCCC
Confidence            99999999999999 6                                  578999999999999999998644456778


Q ss_pred             CCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcchhhhhhccCCcccccccccCcceEEEEE
Q psy14461        415 FLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLV  494 (535)
Q Consensus       415 ~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli  494 (535)
                      .+|+++|++|++|+||+||+||++.++.+.+.+....+....++.....                   ....+.||+||+
T Consensus       441 ~ip~~vft~peiA~vGlte~eA~~~~g~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~g~~Kli  501 (561)
T PTZ00058        441 LIPSVIFSHPPIGTIGLSEQEAIDIYGKENVKIYESRFTNLFFSVYDMD-------------------PAQKEKTYLKLV  501 (561)
T ss_pred             CCCeEEeCCchheeeeCCHHHHHHhcCCCcEEEEEeecchhhhhhhccc-------------------ccCCCCeEEEEE
Confidence            8999999999999999999999988553457776666654433320000                   011367999999


Q ss_pred             EECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461        495 CLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT  535 (535)
Q Consensus       495 ~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~  535 (535)
                      +|+++++|||+|++|++|.|+|+.+++||++++|++||.++
T Consensus       502 ~~~~t~~ILG~~ivG~~a~elI~~~a~ai~~~~t~~dl~~~  542 (561)
T PTZ00058        502 CVGKEELIKGLHIVGLNADEILQGFAVALKMNATKADFDET  542 (561)
T ss_pred             EECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhc
Confidence            99999999999999999999999999999999999999864

>PLN02507 glutathione reductase

Probab=100.00  E-value=1.9e-61  Score=517.05  Aligned_cols=416  Identities=21%  Similarity=0.282  Sum_probs=348.2

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecC---------Ccccccc-------cccccccccccchhhccc--ccccc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERG---------SHLSFRK-------KRRLYYPVAMSDLELEQD--STSAL  150 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~---------~~~~~~~-------~~l~~~~~~i~~~~~~~~--~~~~~  150 (535)
                      +|++|||+||+|+.+|.++...+.+|+|||+.         ..+++..       .+.+.+...+........  +....
T Consensus        26 yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G~~~~  105 (499)
T PLN02507         26 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYGWEIN  105 (499)
T ss_pred             cCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcCcccC
Confidence            68999999999999999999999999999962         2233221       111111101111111111  11111


Q ss_pred             cccccCHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEc---e--eEEEcceEEEeeCceecC-CCC
Q psy14461        151 NVTIRNWNAATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLS---N--RSVTGFNFLLAVERRCLP-EPR  224 (535)
Q Consensus       151 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~---~--~~~~~d~lViATGs~p~~-~i~  224 (535)
                      ....++|.+++++++..+.++...++..++..||+++.|++.+++++++.+.   +  .++.||+||||||++|.. ++|
T Consensus       106 ~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g~a~~vd~~~v~V~~~~g~~~~~~~d~LIIATGs~p~~p~ip  185 (499)
T PLN02507        106 EKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEGEGKIVGPNEVEVTQLDGTKLRYTAKHILIATGSRAQRPNIP  185 (499)
T ss_pred             CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEEeCCCcEEEEEcCEEEEecCCCCCCCCCC
Confidence            1346899999999999999998888888999999999999999999888773   2  358999999999999998 899


Q ss_pred             C-CceechhhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cce
Q psy14461        225 N-SALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCC  301 (535)
Q Consensus       225 G-~~v~~~~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~  301 (535)
                      | +..+++++++.+...+++++|||+|++|+|+|..|+++|.+||++++ +.+++.+++++.+.+.+.|+++||++ +++
T Consensus       186 G~~~~~~~~~~~~l~~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GI~i~~~~  265 (499)
T PLN02507        186 GKELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRGFDDEMRAVVARNLEGRGINLHPRT  265 (499)
T ss_pred             CccceechHHhhhhhhcCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCcccCHHHHHHHHHHHHhCCCEEEeCC
Confidence            9 66678888888888899999999999999999999999999999999 88999999999999999999999999 999


Q ss_pred             EEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCc
Q psy14461        302 VIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGI  381 (535)
Q Consensus       302 ~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~  381 (535)
                      ++++++.. ++.+.+++   .+|+  ++++|.|++++|++||++.+.++.++++++++|+|.||+++||+.|||||+|||
T Consensus       266 ~V~~i~~~-~~~~~v~~---~~g~--~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~I~Vd~~~~Ts~p~IyAiGDv  339 (499)
T PLN02507        266 NLTQLTKT-EGGIKVIT---DHGE--EFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVDEYSRTNIPSIWAIGDV  339 (499)
T ss_pred             EEEEEEEe-CCeEEEEE---CCCc--EEEcCEEEEeecCCCCCCCCCchhhCcEECCCCcEecCCCCcCCCCCEEEeeEc
Confidence            99999875 34556665   3666  799999999999999999877788899999899999999999999999999999


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCC
Q psy14461        382 VHGKPNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDP  461 (535)
Q Consensus       382 ~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~  461 (535)
                      + +.+.+++.|.+||++||+||++......++..+|+++|+.|++|+||+||+||++.++ .++.+...++.+..++. +
T Consensus       340 ~-~~~~l~~~A~~qg~~aa~ni~g~~~~~~~~~~~p~~if~~p~ia~vGlte~ea~~~~~-~~~~~~~~~~~~~~~~~-~  416 (499)
T PLN02507        340 T-NRINLTPVALMEGTCFAKTVFGGQPTKPDYENVACAVFCIPPLSVVGLSEEEAVEQAK-GDILVFTSSFNPMKNTI-S  416 (499)
T ss_pred             C-CCCccHHHHHHHHHHHHHHHcCCCCCcCCCCCCCeEEECCCccEEEeCCHHHHHhccC-CCEEEEEeecCcccccc-c
Confidence            9 8889999999999999999998765566788899999999999999999999998744 25777666666544443 2


Q ss_pred             CCCcchhhhhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461        462 LLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT  535 (535)
Q Consensus       462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~  535 (535)
                      ..                      .+++|+||++|++|++|||+|++|++|.|+|+.+++||++++|++||.++
T Consensus       417 ~~----------------------~~~g~~Kli~d~~t~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~  468 (499)
T PLN02507        417 GR----------------------QEKTVMKLIVDAETDKVLGASMCGPDAPEIMQGIAVALKCGATKAQFDST  468 (499)
T ss_pred             cC----------------------CCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhc
Confidence            22                      36799999999999999999999999999999999999999999999764

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=5.6e-61  Score=511.40  Aligned_cols=417  Identities=16%  Similarity=0.191  Sum_probs=347.8

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccc---cccccccc-cccchh---hcccccc-cccccccCHHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRK---KRRLYYPV-AMSDLE---LEQDSTS-ALNVTIRNWNAA  160 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~---~~l~~~~~-~i~~~~---~~~~~~~-~~~~~~~~~~~l  160 (535)
                      ++++|||+||+|+.+|.++...+.+|+|||+.+.+++..   +.+|.... ..+...   .....+. ......+||..+
T Consensus         5 ~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~   84 (471)
T PRK06467          5 TQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKIDIDKM   84 (471)
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCCCcCHHHH
Confidence            689999999999999999999999999999976554321   11222100 011100   0011110 012346799999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEc---e--eEEEcceEEEeeCceecC-C-CCC--Cceech
Q psy14461        161 TKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLS---N--RSVTGFNFLLAVERRCLP-E-PRN--SALISA  231 (535)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~---~--~~~~~d~lViATGs~p~~-~-i~G--~~v~~~  231 (535)
                      .++++..++++...+...++..||+++.|++.+.+++++.+.   +  .++.||+||||||++|+. | +++  +.++++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~p~~~~~~~~v~~~  164 (471)
T PRK06467         85 RARKEKVVKQLTGGLAGMAKGRKVTVVNGLGKFTGGNTLEVTGEDGKTTVIEFDNAIIAAGSRPIQLPFIPHDDPRIWDS  164 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCceEEEEcCEEEEeCCCCCCCCCCCCCCCCcEECh
Confidence            999999999998888888999999999999999999988774   2  479999999999999985 4 555  568999


Q ss_pred             hhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEe
Q psy14461        232 DDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISS  309 (535)
Q Consensus       232 ~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~  309 (535)
                      ++++.+...|++++|||||++|+|+|..|+++|.+||++++ +++++.+++++.+.+++.|+++ |++ +++.+++++..
T Consensus       165 ~~~~~~~~~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~-v~i~~~~~v~~i~~~  243 (471)
T PRK06467        165 TDALELKEVPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPAADKDIVKVFTKRIKKQ-FNIMLETKVTAVEAK  243 (471)
T ss_pred             HHhhccccCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCcCCHHHHHHHHHHHhhc-eEEEcCCEEEEEEEc
Confidence            99999888899999999999999999999999999999999 9999999999999999999988 999 99999999865


Q ss_pred             CCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCCCcH
Q psy14461        310 FDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNA  389 (535)
Q Consensus       310 ~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~~~~  389 (535)
                       ++.+.+++.+ .+|+.+++++|.|++++|++||++++.++.++++++++|+|.||+++||+.|+|||+|||+ +.++++
T Consensus       244 -~~~~~v~~~~-~~~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd~~~~t~~p~VyAiGDv~-~~~~la  320 (471)
T PRK06467        244 -EDGIYVTMEG-KKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDKQCRTNVPHIFAIGDIV-GQPMLA  320 (471)
T ss_pred             -CCEEEEEEEe-CCCcceEEEeCEEEEeecccccCCccChhhcCceECCCCcEeeCCCcccCCCCEEEehhhc-CCcccH
Confidence             3455666542 1243457999999999999999998767888999999999999999999999999999999 888999


Q ss_pred             HHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcchhh
Q psy14461        390 SMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVK  469 (535)
Q Consensus       390 ~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (535)
                      +.|.+||++||.||++.. ..+++..+|+++|++|++++||+||+||++.+.  ++.+...++....++. ..       
T Consensus       321 ~~A~~eG~~aa~~i~g~~-~~~~~~~~p~~~~~~p~ia~vGlte~ea~~~g~--~~~~~~~~~~~~~~~~-~~-------  389 (471)
T PRK06467        321 HKGVHEGHVAAEVIAGKK-HYFDPKVIPSIAYTEPEVAWVGLTEKEAKEEGI--EYETATFPWAASGRAI-AS-------  389 (471)
T ss_pred             HHHHHHHHHHHHHHcCCC-CCCCCCCCCeEEECCCceeEEECCHHHHHhcCC--CeEEEEEecCcchhhh-hC-------
Confidence            999999999999999864 457788899999999999999999999998843  6777777776544443 11       


Q ss_pred             hhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461        470 LVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT  535 (535)
Q Consensus       470 ~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~  535 (535)
                                     +.++||+||++|++|++|||+|++|++|.|+|+.+++||++++|++||.++
T Consensus       390 ---------------~~~~g~~kli~d~~t~~ilG~~~vg~~a~e~i~~~a~ai~~~~t~~~l~~~  440 (471)
T PRK06467        390 ---------------DCADGMTKLIFDKETHRVLGGAIVGTNAGELLGEIGLAIEMGCDAEDIALT  440 (471)
T ss_pred             ---------------CCCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhc
Confidence                           257899999999999999999999999999999999999999999999864

>PRK06370 mercuric reductase; Validated

Probab=100.00  E-value=3.1e-61  Score=513.77  Aligned_cols=417  Identities=18%  Similarity=0.212  Sum_probs=347.3

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccc---ccccccc----ccccchh--hcccccccccccccCHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRK---KRRLYYP----VAMSDLE--LEQDSTSALNVTIRNWNA  159 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~---~~l~~~~----~~i~~~~--~~~~~~~~~~~~~~~~~~  159 (535)
                      +|++|||+||+|+.+|+++...+.+|+|||++. +++..   +-+|...    .......  .+..+........+||..
T Consensus         6 ~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~   84 (463)
T PRK06370          6 YDAIVIGAGQAGPPLAARAAGLGMKVALIERGL-LGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPVSVDFKA   84 (463)
T ss_pred             ccEEEECCCHHHHHHHHHHHhCCCeEEEEecCc-cCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccCccCHHH
Confidence            689999999999999999999999999999874 22210   1122110    0000000  011122111124679999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhc-CcEEEEeEEEEecCCEEEEceeEEEcceEEEeeCceecC-CCCC---CceechhhH
Q psy14461        160 ATKLIKRFCIRAKNDSMRELKAL-GIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAVERRCLP-EPRN---SALISADDL  234 (535)
Q Consensus       160 l~~~~~~~~~~~~~~~~~~~~~~-gV~~~~g~~~~~~~~~v~~~~~~~~~d~lViATGs~p~~-~i~G---~~v~~~~~~  234 (535)
                      +.++++..+.++...+...+++. ||+++.|++.+.+++++++++.++.||+||||||++|+. ++||   ..+++++++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~~~~~~v~v~~~~~~~d~lViATGs~p~~p~i~G~~~~~~~~~~~~  164 (463)
T PRK06370         85 VMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARFESPNTVRVGGETLRAKRIFINTGARAAIPPIPGLDEVGYLTNETI  164 (463)
T ss_pred             HHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEEccCCEEEECcEEEEeCEEEEcCCCCCCCCCCCCCCcCceEcchHh
Confidence            99999998888777788888887 999999999999999999977789999999999999998 9999   457888888


Q ss_pred             HhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCC
Q psy14461        235 FRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDG  312 (535)
Q Consensus       235 ~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~  312 (535)
                      +.+...+++|+|||+|++|+|+|..|+++|.+|+++++ +.+++.+++++.+.+.+.|+++||++ +++++.+++.. ++
T Consensus       165 ~~~~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~-~~  243 (463)
T PRK06370        165 FSLDELPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPREDEDVAAAVREILEREGIDVRLNAECIRVERD-GD  243 (463)
T ss_pred             hCccccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CC
Confidence            88777899999999999999999999999999999999 99999999999999999999999999 99999999875 34


Q ss_pred             cEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCCCcHHHH
Q psy14461        313 MKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMA  392 (535)
Q Consensus       313 ~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~~~~~~A  392 (535)
                      ...+.+..  ++...++++|.|++|+|++||++.++++..+++++++|+|.||+++||+.|+|||+|||+ +.+.+.+.|
T Consensus       244 ~~~v~~~~--~~~~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~l~t~~~~IyAiGD~~-~~~~~~~~A  320 (463)
T PRK06370        244 GIAVGLDC--NGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVDDQLRTTNPGIYAAGDCN-GRGAFTHTA  320 (463)
T ss_pred             EEEEEEEe--CCCceEEEeCEEEECcCCCcCCCCcCchhhCceECCCCcEeECcCCcCCCCCEEEeeecC-CCcccHHHH
Confidence            44555432  222337999999999999999986666888999999999999999999999999999999 888999999


Q ss_pred             HHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcchhhhhh
Q psy14461        393 AISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVC  472 (535)
Q Consensus       393 ~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  472 (535)
                      .+||++||+||++......++..+|+++|++|++++||+||+||++.+.  ++.+...++....++. ..          
T Consensus       321 ~~~g~~aa~ni~~~~~~~~~~~~~p~~~~~~p~ia~vG~te~~a~~~g~--~~~~~~~~~~~~~~~~-~~----------  387 (463)
T PRK06370        321 YNDARIVAANLLDGGRRKVSDRIVPYATYTDPPLARVGMTEAEARKSGR--RVLVGTRPMTRVGRAV-EK----------  387 (463)
T ss_pred             HHHHHHHHHHHhCCCCCCcccccCCeEEEcCCCcEeeeCCHHHHHHcCC--CeEEEEEecCcchhHH-hc----------
Confidence            9999999999998645566778899999999999999999999998743  6777777776655543 11          


Q ss_pred             ccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461        473 LKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT  535 (535)
Q Consensus       473 ~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~  535 (535)
                                  +.++||+||++|++|++|||+|++|++|+|+|+.++++|++++|++||.++
T Consensus       388 ------------~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~  438 (463)
T PRK06370        388 ------------GETQGFMKVVVDADTDRILGATILGVHGDEMIHEILDAMYAGAPYTTLSRA  438 (463)
T ss_pred             ------------CCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcC
Confidence                        146899999999999999999999999999999999999999999999864

>PRK07846 mycothione reductase; Reviewed

Probab=100.00  E-value=4.5e-61  Score=509.12  Aligned_cols=411  Identities=20%  Similarity=0.232  Sum_probs=338.4

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCc------ccccccccccccccccchhhccccccc-ccccccCHHHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSH------LSFRKKRRLYYPVAMSDLELEQDSTSA-LNVTIRNWNAAT  161 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~------~~~~~~~l~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~l~  161 (535)
                      +|++|||+||+|..+|+++  .+.+|+|||++..      .++.|.+....+..+.......+.+.. .....+||.+++
T Consensus         2 yD~vVIG~G~~g~~aa~~~--~G~~V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~   79 (451)
T PRK07846          2 YDLIIIGTGSGNSILDERF--ADKRIAIVEKGTFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAELDGVRWPDIV   79 (451)
T ss_pred             CCEEEECCCHHHHHHHHHH--CCCeEEEEeCCCCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCCcCCHHHHH
Confidence            4789999999999999875  4899999998641      112222221111111111111111111 123467999999


Q ss_pred             HHHHHHHHHHHHH-HHHH-HHhcCcEEEEeEEEEecCCEEEEce-eEEEcceEEEeeCceecC-CCCC---CceechhhH
Q psy14461        162 KLIKRFCIRAKND-SMRE-LKALGIDIVRTAAAFTNPHTIKLSN-RSVTGFNFLLAVERRCLP-EPRN---SALISADDL  234 (535)
Q Consensus       162 ~~~~~~~~~~~~~-~~~~-~~~~gV~~~~g~~~~~~~~~v~~~~-~~~~~d~lViATGs~p~~-~i~G---~~v~~~~~~  234 (535)
                      ++++..++++... .... ++..||+++.|++.+.++++|++.+ .+++||+||||||++|+. ++||   ..+++.+++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~V~v~~g~~~~~d~lViATGs~p~~p~i~g~~~~~~~~~~~~  159 (451)
T PRK07846         80 SRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARFIGPKTLRTGDGEEITADQVVIAAGSRPVIPPVIADSGVRYHTSDTI  159 (451)
T ss_pred             HHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEEecCCEEEECCCCEEEeCEEEEcCCCCCCCCCCCCcCCccEEchHHH
Confidence            9999998888553 4455 7788999999999999999999964 679999999999999988 8888   347888999


Q ss_pred             HhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCC
Q psy14461        235 FRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDG  312 (535)
Q Consensus       235 ~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~  312 (535)
                      +.+...|++++|||||++|+|+|..|+++|.+||++++ +++++.+++++.+.+.+.+ +.+|++ ++.++++++.+ ++
T Consensus       160 ~~l~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~~~d~~~~~~l~~l~-~~~v~i~~~~~v~~i~~~-~~  237 (451)
T PRK07846        160 MRLPELPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRHLDDDISERFTELA-SKRWDVRLGRNVVGVSQD-GS  237 (451)
T ss_pred             hhhhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHHHHHHHH-hcCeEEEeCCEEEEEEEc-CC
Confidence            88888899999999999999999999999999999999 9999999999998887755 567999 99999999865 34


Q ss_pred             cEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCCCcHHHH
Q psy14461        313 MKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMA  392 (535)
Q Consensus       313 ~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~~~~~~A  392 (535)
                      .+.+++.   +|+  ++++|.|++|+|++||+++++++..+++++++|+|.||+++||+.|+|||+|||+ +.+++.+.|
T Consensus       238 ~v~v~~~---~g~--~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~Vd~~~~Ts~p~IyA~GD~~-~~~~l~~~A  311 (451)
T PRK07846        238 GVTLRLD---DGS--TVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDEYQRTSAEGVFALGDVS-SPYQLKHVA  311 (451)
T ss_pred             EEEEEEC---CCc--EeecCEEEEEECCccCccccCchhcCceECCCCcEeECCCcccCCCCEEEEeecC-CCccChhHH
Confidence            5556652   566  7999999999999999999877888999999999999999999999999999999 888899999


Q ss_pred             HHHHHHHHHHHhCCC-CCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcchhhhh
Q psy14461        393 AISARLIIERLYGMQ-DQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLV  471 (535)
Q Consensus       393 ~~~g~~aa~~i~g~~-~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  471 (535)
                      .+||+++|+||++.. ....++..+|+++|++|++|+||+||+||++.+.  ++.+...++....++. ..         
T Consensus       312 ~~~g~~~a~ni~~~~~~~~~~~~~~p~~if~~p~ia~vGlte~~a~~~g~--~~~~~~~~~~~~~~~~-~~---------  379 (451)
T PRK07846        312 NHEARVVQHNLLHPDDLIASDHRFVPAAVFTHPQIASVGLTENEARAAGL--DITVKVQNYGDVAYGW-AM---------  379 (451)
T ss_pred             HHHHHHHHHHHcCCCCccccCCCCCCeEEECCCCcEeEeCCHHHHHhcCC--CEEEEEEecCcchhhh-hC---------
Confidence            999999999999763 3345777899999999999999999999998843  6777777776655442 11         


Q ss_pred             hccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcC
Q psy14461        472 CLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDG  534 (535)
Q Consensus       472 ~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~  534 (535)
                                   +.++||+||++|++|++|||+|++|++|.|+|+.+++||++++|++||.+
T Consensus       380 -------------~~~~g~~Kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~  429 (451)
T PRK07846        380 -------------EDTTGFVKLIADRDTGRLLGAHIIGPQASTLIQPLIQAMSFGLDAREMAR  429 (451)
T ss_pred             -------------CCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhh
Confidence                         14689999999999999999999999999999999999999999999975

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=100.00  E-value=2e-60  Score=507.29  Aligned_cols=421  Identities=27%  Similarity=0.361  Sum_probs=345.3

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCC--------ccccc-------ccccccccccccchhhccc--cccccc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGS--------HLSFR-------KKRRLYYPVAMSDLELEQD--STSALN  151 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~--------~~~~~-------~~~l~~~~~~i~~~~~~~~--~~~~~~  151 (535)
                      +|++|||+|++|+.+|++....+.+|+|||+..        .+++.       |..+......+........  +.. ..
T Consensus         3 yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~-~~   81 (484)
T TIGR01438         3 YDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWN-VE   81 (484)
T ss_pred             cCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCcc-cC
Confidence            589999999999999999999999999999731        12221       1111111000000000011  111 11


Q ss_pred             c-cccCHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEce-----eEEEcceEEEeeCceecC-CCC
Q psy14461        152 V-TIRNWNAATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSN-----RSVTGFNFLLAVERRCLP-EPR  224 (535)
Q Consensus       152 ~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~-----~~~~~d~lViATGs~p~~-~i~  224 (535)
                      . ..+||.++.+++++.+.++...+...++..||+++.|+++|.++++|.+..     ..+.||+||||||++|+. ++|
T Consensus        82 ~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~~p~ip  161 (484)
T TIGR01438        82 ETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYAEFVDKHRIKATNKKGKEKIYSAERFLIATGERPRYPGIP  161 (484)
T ss_pred             CCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCCCEEEEeccCCCceEEEeCEEEEecCCCCCCCCCC
Confidence            2 467999999999999999988888889999999999999999999998842     479999999999999988 899


Q ss_pred             C--CceechhhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEcCcCCccCcHHHHHHHHHhhhcCCeEE-cce
Q psy14461        225 N--SALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVSI-QCC  301 (535)
Q Consensus       225 G--~~v~~~~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~  301 (535)
                      |  +..+++++++.+...+++++|||||++|+|+|..|+++|.+||+++++.+++.+|+++.+.+++.|+++||++ +++
T Consensus       162 G~~~~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~~~d~~~~~~l~~~L~~~gV~i~~~~  241 (484)
T TIGR01438       162 GAKELCITSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDCANKVGEHMEEHGVKFKRQF  241 (484)
T ss_pred             CccceeecHHHhhcccccCCCEEEECCCHHHHHHHHHHHHhCCcEEEEEecccccccCHHHHHHHHHHHHHcCCEEEeCc
Confidence            9  5567889999888889999999999999999999999999999999877789999999999999999999999 999


Q ss_pred             EEEEEEEeCCCcEEEEEecCCCCC-ceEEEcCEEEEccCCCCCCCCCCccccCeeecC-CCceEcCCCCCcCCCCEEEeC
Q psy14461        302 VIEKVISSFDGMKGVRGFHPESKE-PFADVFKTVVNAMEKKFDFAALNLHHIGVDIKK-KSYVVCNEKDQTSVGNIFAVG  379 (535)
Q Consensus       302 ~v~~i~~~~~~~~~v~~~~~~~G~-~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~-~G~i~vd~~~~T~~~~IyA~G  379 (535)
                      .+++++.. ++.+.+++.   +|+ ..++++|.|++|+|++||++.++++..++++++ +|+|.||+++||+.|+|||+|
T Consensus       242 ~v~~v~~~-~~~~~v~~~---~~~~~~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~~G~I~Vd~~~~Ts~p~IyA~G  317 (484)
T TIGR01438       242 VPIKVEQI-EAKVKVTFT---DSTNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGKIPADEEEQTNVPYIYAVG  317 (484)
T ss_pred             eEEEEEEc-CCeEEEEEe---cCCcceEEEeCEEEEEecCCcCCCcCCcccccceecCcCCeEecCCCcccCCCCEEEEE
Confidence            99999865 345566664   332 237999999999999999998877889999876 599999999999999999999


Q ss_pred             CcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCccccc
Q psy14461        380 GIVHGKPNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLL  459 (535)
Q Consensus       380 D~~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~  459 (535)
                      ||+...+.+.+.|.+||+++|+||++......++..+|+++|++|++|+||+||+||+++++...+.+...++..+.++.
T Consensus       318 Dv~~~~~~l~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~~i~~~p~ia~vGlte~~a~~~~g~~~~~~~~~~~~~~~~~~  397 (484)
T TIGR01438       318 DILEDKQELTPVAIQAGRLLAQRLFSGSTVICDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVFHSYFWPLEWTI  397 (484)
T ss_pred             EecCCCccchHHHHHHHHHHHHHHhcCCCcccccccCCeEEeCCCceeeecCCHHHHHHhcCCCcEEEEEeecchhhhHh
Confidence            99833678999999999999999998655456788899999999999999999999998754335777766776555543


Q ss_pred             CCCCCcchhhhhhccCCcccccccccCcceEEEEEEE-CCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461        460 DPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCL-KGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT  535 (535)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~-~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~  535 (535)
                       +.+.                    ..+.+|+||+++ ++|++|||+|++|++|.|+|+.+++||++++|++||.++
T Consensus       398 -~~~~--------------------~~~~g~~Kli~~~~~t~~ILG~~ivg~~a~e~I~~~a~ai~~~~t~~dl~~~  453 (484)
T TIGR01438       398 -PSRD--------------------NSNKCYAKAVCNRKENERVVGFHVVGPNAGEVTQGFAAALRCGLTKKDLDNT  453 (484)
T ss_pred             -hCCC--------------------ccCCcEEEEEEecCCCCeEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhh
Confidence             2221                    125799999996 579999999999999999999999999999999999864

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>TIGR02053 MerA mercuric reductase

Probab=100.00  E-value=3.4e-60  Score=506.00  Aligned_cols=417  Identities=20%  Similarity=0.239  Sum_probs=344.7

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccc---ccccccccc-ccchhh--ccccccc-ccccccCHHHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRK---KRRLYYPVA-MSDLEL--EQDSTSA-LNVTIRNWNAAT  161 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~---~~l~~~~~~-i~~~~~--~~~~~~~-~~~~~~~~~~l~  161 (535)
                      ++++|||+||+|+.+|+++...+.+|+|||++. +++..   +-+|...+. .+....  +...+.. .....++|.+++
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~   79 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGELL   79 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHHHH
Confidence            378999999999999999999999999999975 33221   012211000 000000  0001110 123467999999


Q ss_pred             HHHHHHHHHHHH-HHHHHHHhcCcEEEEeEEEEecCCEEEEce--eEEEcceEEEeeCceecC-CCCC---CceechhhH
Q psy14461        162 KLIKRFCIRAKN-DSMRELKALGIDIVRTAAAFTNPHTIKLSN--RSVTGFNFLLAVERRCLP-EPRN---SALISADDL  234 (535)
Q Consensus       162 ~~~~~~~~~~~~-~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~--~~~~~d~lViATGs~p~~-~i~G---~~v~~~~~~  234 (535)
                      .++++....+.. .+...+++.+|+++.|++.+.++++|.+.+  ..+.||+||||||++|.. ++||   .++++++++
T Consensus        80 ~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v~~g~~~~~~~~lIiATGs~p~~p~i~G~~~~~~~~~~~~  159 (463)
T TIGR02053        80 EGKREVVEELRHEKYEDVLSSYGVDYLRGRARFKDPKTVKVDLGREVRGAKRFLIATGARPAIPPIPGLKEAGYLTSEEA  159 (463)
T ss_pred             HHHHHHHHHHhhhhHHHHHHhCCcEEEEEEEEEccCCEEEEcCCeEEEEeCEEEEcCCCCCCCCCCCCcccCceECchhh
Confidence            999988888865 366778889999999999999999999865  468999999999999988 8999   347888898


Q ss_pred             HhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCC
Q psy14461        235 FRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDG  312 (535)
Q Consensus       235 ~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~  312 (535)
                      +.+...+++++|||+|++|+|+|..|+++|.+||++++ +++++.+++++...+++.|++.||++ ++++|++++.+ ++
T Consensus       160 ~~~~~~~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~-~~  238 (463)
T TIGR02053       160 LALDRIPESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPREEPEISAAVEEALAEEGIEVVTSAQVKAVSVR-GG  238 (463)
T ss_pred             hCcccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCccCHHHHHHHHHHHHHcCCEEEcCcEEEEEEEc-CC
Confidence            88777789999999999999999999999999999999 89999999999999999999999999 99999999875 34


Q ss_pred             cEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCCCcHHHH
Q psy14461        313 MKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMA  392 (535)
Q Consensus       313 ~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~~~~~~A  392 (535)
                      ...+++..  ++...++++|.|++|+|++||++.++++..+++++++|+|.||+++||+.|+|||+|||+ +.+.+++.|
T Consensus       239 ~~~v~~~~--~~~~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~VyAiGD~~-~~~~~~~~A  315 (463)
T TIGR02053       239 GKIITVEK--PGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDETLRTSNPGIYAAGDVT-GGLQLEYVA  315 (463)
T ss_pred             EEEEEEEe--CCCceEEEeCEEEEeECCCcCCCCCCccccCCEECCCCcEeECCCccCCCCCEEEeeecC-CCcccHhHH
Confidence            45555542  233347999999999999999996666888999999999999999999999999999999 788899999


Q ss_pred             HHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcchhhhhh
Q psy14461        393 AISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVC  472 (535)
Q Consensus       393 ~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  472 (535)
                      .+||++||.||++.....+++..+|+++|++|++++||+||+||++.+.  ++.+...++..++++. ..          
T Consensus       316 ~~~g~~aa~ni~~~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~--~~~~~~~~~~~~~~~~-~~----------  382 (463)
T TIGR02053       316 AKEGVVAAENALGGANAKLDLLVIPRVVFTDPAVASVGLTEAEAQKAGI--ECDCRTLPLTNVPRAR-IN----------  382 (463)
T ss_pred             HHHHHHHHHHhcCCCCCccCcCCCCeEEeccCceEEEeCCHHHHHhcCC--CeEEEEEecccchHHH-hc----------
Confidence            9999999999998634456777899999999999999999999998843  6777776766555543 11          


Q ss_pred             ccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461        473 LKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT  535 (535)
Q Consensus       473 ~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~  535 (535)
                                  +.+.||+||++|++|++|||+|++|++|.|+|+.++++|++++|++||.++
T Consensus       383 ------------~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~  433 (463)
T TIGR02053       383 ------------RDTRGFIKLVAEPGTGKVLGVQVVAPEAAEVINEAALAIRAGMTVDDLIDT  433 (463)
T ss_pred             ------------CCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhC
Confidence                        256899999999999999999999999999999999999999999999864

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=1.2e-59  Score=500.98  Aligned_cols=417  Identities=17%  Similarity=0.173  Sum_probs=342.4

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccc---ccccccccc-ccchhh--c---ccccccccccccCHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRK---KRRLYYPVA-MSDLEL--E---QDSTSALNVTIRNWNA  159 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~---~~l~~~~~~-i~~~~~--~---~~~~~~~~~~~~~~~~  159 (535)
                      ++|+|||+||+|+.+|+++...+.+|+|||+.+.+++..   +-+|....- .+....  +   ...+.......++|.+
T Consensus         4 ~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~   83 (466)
T PRK06115          4 YDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPTLNLAQ   83 (466)
T ss_pred             ccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccCccCHHH
Confidence            689999999999999999999999999999855444321   012211000 000000  0   0111110124678999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEc---e--eEEEcceEEEeeCceecCCCCC-----Ccee
Q psy14461        160 ATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLS---N--RSVTGFNFLLAVERRCLPEPRN-----SALI  229 (535)
Q Consensus       160 l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~---~--~~~~~d~lViATGs~p~~~i~G-----~~v~  229 (535)
                      +.++++..+.++...+...++..+|+++.|++.+.+++++.+.   +  .+++||+||||||++|.. +||     ..++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~~-ipg~~~~~~~~~  162 (466)
T PRK06115         84 MMKQKDESVEALTKGVEFLFRKNKVDWIKGWGRLDGVGKVVVKAEDGSETQLEAKDIVIATGSEPTP-LPGVTIDNQRII  162 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEEcCCCceEEEEeCEEEEeCCCCCCC-CCCCCCCCCeEE
Confidence            9999999999888888888888999999999999888887763   2  369999999999999864 444     4578


Q ss_pred             chhhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEE
Q psy14461        230 SADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVI  307 (535)
Q Consensus       230 ~~~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~  307 (535)
                      ++++++.+...|++++|||+|++|+|+|..|+++|.+||++++ +++++.+++++.+.+++.|++.||++ +++++++++
T Consensus       163 ~~~~~~~~~~~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~  242 (466)
T PRK06115        163 DSTGALSLPEVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPGTDTETAKTLQKALTKQGMKFKLGSKVTGAT  242 (466)
T ss_pred             CHHHHhCCccCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCCHHHHHHHHHHHHhcCCEEEECcEEEEEE
Confidence            8899988877899999999999999999999999999999999 99999999999999999999999999 999999998


Q ss_pred             EeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCCC
Q psy14461        308 SSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPN  387 (535)
Q Consensus       308 ~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~~  387 (535)
                      .+ ++.+.+.+....+|+.+++++|.|++++|++||++.++++..+++++++| +.+|++++|+.|+|||+|||+ +.++
T Consensus       243 ~~-~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~~~~G-~~vd~~~~Ts~~~IyA~GD~~-~~~~  319 (466)
T PRK06115        243 AG-ADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQGLGLETVGLETDKRG-MLANDHHRTSVPGVWVIGDVT-SGPM  319 (466)
T ss_pred             Ec-CCeEEEEEEEcCCCceeEEEeCEEEEccCCccccccCCcccccceeCCCC-EEECCCeecCCCCEEEeeecC-CCcc
Confidence            65 34455555321235445799999999999999999877788889888777 678999999999999999999 8899


Q ss_pred             cHHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcch
Q psy14461        388 NASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENF  467 (535)
Q Consensus       388 ~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  467 (535)
                      +++.|.+||++||+||++.. ...++..+|+++|++|++++||+||+||++.+.  ++.+...++..+.++. ..     
T Consensus       320 la~~A~~~g~~aa~~i~~~~-~~~~~~~~p~~~~t~p~ia~vGlte~~a~~~g~--~~~~~~~~~~~~~~~~-~~-----  390 (466)
T PRK06115        320 LAHKAEDEAVACIERIAGKA-GEVNYGLIPGVIYTRPEVATVGKTEEQLKAEGR--AYKVGKFPFTANSRAK-IN-----  390 (466)
T ss_pred             cHHHHHHHHHHHHHHHcCCC-CCCCCCCCCeEEECCcccEEeeCCHHHHHHCCC--CEEEEEEecccChhhH-hc-----
Confidence            99999999999999999864 346788899999999999999999999998844  6777777776655543 11     


Q ss_pred             hhhhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461        468 VKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT  535 (535)
Q Consensus       468 ~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~  535 (535)
                                       +++.||+||++|++|++|||+|++|++|+|+|+.+++||++++|++||.++
T Consensus       391 -----------------~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~dl~~~  441 (466)
T PRK06115        391 -----------------HETEGFAKILADARTDEVLGVHMVGPSVSEMIGEFCVAMEFSASAEDIALT  441 (466)
T ss_pred             -----------------CCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhC
Confidence                             246899999999999999999999999999999999999999999999864

>KOG1335|consensus

Probab=100.00  E-value=6.7e-61  Score=463.73  Aligned_cols=419  Identities=19%  Similarity=0.203  Sum_probs=366.2

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccc---ccccccccc-ccchh---h--cccccc-cccccccCH
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRK---KRRLYYPVA-MSDLE---L--EQDSTS-ALNVTIRNW  157 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~---~~l~~~~~~-i~~~~---~--~~~~~~-~~~~~~~~~  157 (535)
                      -+|++|||+||.|..||++....+...+.+|+...+++..   +-+|..+.. -++.-   +  .+..+. .+....+|.
T Consensus        39 d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~~~dl  118 (506)
T KOG1335|consen   39 DYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSVSLDL  118 (506)
T ss_pred             cCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCccccceecCH
Confidence            3788999999999999999999999999999987654321   012211000 01110   0  111111 233678899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEce-----eEEEcceEEEeeCceecCCCCC-----Cc
Q psy14461        158 NAATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSN-----RSVTGFNFLLAVERRCLPEPRN-----SA  227 (535)
Q Consensus       158 ~~l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~-----~~~~~d~lViATGs~p~~~i~G-----~~  227 (535)
                      +.++..+...+..+...+...+++.+|+++.|...+.++++|++..     ..+.++++||||||.-. ++||     +.
T Consensus       119 ~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~gsf~~p~~V~v~k~dg~~~ii~aKnIiiATGSeV~-~~PGI~IDekk  197 (506)
T KOG1335|consen  119 QAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFGSFLDPNKVSVKKIDGEDQIIKAKNIIIATGSEVT-PFPGITIDEKK  197 (506)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeEeecCCceEEEeccCCCceEEeeeeEEEEeCCccC-CCCCeEecCce
Confidence            9999999999999999999999999999999999999999999853     67999999999999433 4667     67


Q ss_pred             eechhhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEE
Q psy14461        228 LISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEK  305 (535)
Q Consensus       228 v~~~~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~  305 (535)
                      +.+++.++.+.+.|++++|||+|++|+|++..+.|+|.+||+++. +++.+.+|.++++.+++.|.+.|++| +++++..
T Consensus       198 IVSStgALsL~~vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~mD~Eisk~~qr~L~kQgikF~l~tkv~~  277 (506)
T KOG1335|consen  198 IVSSTGALSLKEVPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVMDGEISKAFQRVLQKQGIKFKLGTKVTS  277 (506)
T ss_pred             EEecCCccchhhCcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccccCHHHHHHHHHHHHhcCceeEeccEEEE
Confidence            899999999999999999999999999999999999999999999 99999999999999999999999999 9999999


Q ss_pred             EEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCC
Q psy14461        306 VISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGK  385 (535)
Q Consensus       306 i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~  385 (535)
                      ++...++.+.+++++..+|+..+++||.+++++|++|-+..|++++.|++.|++|++.+|+.++|.+|+||++||++ .+
T Consensus       278 a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLgle~iGi~~D~r~rv~v~~~f~t~vP~i~~IGDv~-~g  356 (506)
T KOG1335|consen  278 ATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGRVIVNTRFQTKVPHIYAIGDVT-LG  356 (506)
T ss_pred             eeccCCCceEEEEEecCCCceeEEEeeEEEEEccCcccccCCChhhcccccccccceeccccccccCCceEEecccC-Cc
Confidence            99886678888888877888889999999999999999999999999999999999999999999999999999999 99


Q ss_pred             CCcHHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCc
Q psy14461        386 PNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPE  465 (535)
Q Consensus       386 ~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  465 (535)
                      |+++|.|..||-.+.+.|.+.. ...+|..+|.+.|+.||+++||+||+|+++++-  .|.+.+.+|..+.++. .    
T Consensus       357 pMLAhkAeeegI~~VE~i~g~~-~hv~ynciP~v~ythPEvawVG~TEeqlkeegi--~y~vgkfpF~aNsRak-t----  428 (506)
T KOG1335|consen  357 PMLAHKAEEEGIAAVEGIAGGH-GHVDYNCIPSVVYTHPEVAWVGKTEEQLKEEGI--KYKVGKFPFSANSRAK-T----  428 (506)
T ss_pred             chhhhhhhhhchhheeeecccC-cccccCCCCceeecccceeeeccchhhHHhcCc--ceEeeeccccccchhh-c----
Confidence            9999999999999999999865 346777899999999999999999999999844  7888888888776654 1    


Q ss_pred             chhhhhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcC
Q psy14461        466 NFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDG  534 (535)
Q Consensus       466 ~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~  534 (535)
                                        ++..+||+|+++|++|++|||+||+||+|.|||++.++||+.|.+.+|++.
T Consensus       429 ------------------n~d~eg~vKvl~d~~tdkiLGvHiigp~AgEli~EA~lAieyGasaeDvar  479 (506)
T KOG1335|consen  429 ------------------NNDTEGFVKVLADKETDKILGVHIIGPNAGELIHEASLAIEYGASAEDVAR  479 (506)
T ss_pred             ------------------cCCccceeEEEecCCCCcEEEEEEecCCHHHHHHHHHHHHHhCccHHHHhh
Confidence                              236799999999999999999999999999999999999999999999874

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=1.2e-59  Score=501.78  Aligned_cols=416  Identities=18%  Similarity=0.174  Sum_probs=341.8

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccc---cccccccccccc--hhhc----ccccccccccccCHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRK---KRRLYYPVAMSD--LELE----QDSTSALNVTIRNWNA  159 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~---~~l~~~~~~i~~--~~~~----~~~~~~~~~~~~~~~~  159 (535)
                      ++++|||+||+|+.+|+++...+.+|+|||++. +++..   +.+|.... +..  ....    ...+.......++|..
T Consensus         5 ~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~~-~GG~c~~~gciPsk~l-~~~~~~~~~~~~~~~~~gi~~~~~~~~~~   82 (466)
T PRK07818          5 YDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKKY-WGGVCLNVGCIPSKAL-LRNAELAHIFTKEAKTFGISGEVTFDYGA   82 (466)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEecCC-CCCceecCCccccHHH-HhhHHHHHHHHHHHHhcCCCcCcccCHHH
Confidence            689999999999999999999999999999863 22211   01221100 100  0000    0011111234679999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEce-----eEEEcceEEEeeCceecCCCCC----Cceec
Q psy14461        160 ATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSN-----RSVTGFNFLLAVERRCLPEPRN----SALIS  230 (535)
Q Consensus       160 l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~-----~~~~~d~lViATGs~p~~~i~G----~~v~~  230 (535)
                      +..+++..++++...+...++..+|+.+.|++.+.+.+++.+..     .+++||+||||||++|+. +||    ..+++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~-~pg~~~~~~v~~  161 (466)
T PRK07818         83 AFDRSRKVAEGRVKGVHFLMKKNKITEIHGYGTFTDANTLEVDLNDGGTETVTFDNAIIATGSSTRL-LPGTSLSENVVT  161 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcCCCEEEEEecCCCeeEEEcCEEEEeCCCCCCC-CCCCCCCCcEEc
Confidence            99999988888877777777788999999999999999888742     479999999999999976 344    34778


Q ss_pred             hhhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEE
Q psy14461        231 ADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVIS  308 (535)
Q Consensus       231 ~~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~  308 (535)
                      .++.+.....|++++|||+|++|+|+|..|+++|.+|+++++ +++++.+++++.+.+++.|+++||++ +++++++++.
T Consensus       162 ~~~~~~~~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~  241 (466)
T PRK07818        162 YEEQILSRELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPNEDAEVSKEIAKQYKKLGVKILTGTKVESIDD  241 (466)
T ss_pred             hHHHhccccCCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCccCHHHHHHHHHHHHHCCCEEEECCEEEEEEE
Confidence            777666666789999999999999999999999999999999 99999999999999999999999999 9999999986


Q ss_pred             eCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCCCc
Q psy14461        309 SFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNN  388 (535)
Q Consensus       309 ~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~~~  388 (535)
                      + ++.+.+++.. .+|+..++++|.|++|+|++||++.++++..+++++++|+|.||+++||+.|+|||+|||+ +.+++
T Consensus       242 ~-~~~~~v~~~~-~~g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~Ts~p~IyAiGD~~-~~~~l  318 (466)
T PRK07818        242 N-GSKVTVTVSK-KDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAIDDYMRTNVPHIYAIGDVT-AKLQL  318 (466)
T ss_pred             e-CCeEEEEEEe-cCCCeEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcEeeCCCcccCCCCEEEEeecC-CCccc
Confidence            5 3445555532 2565457999999999999999998777888999988999999999999999999999999 88899


Q ss_pred             HHHHHHHHHHHHHHHhCCCCCCC-CCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcch
Q psy14461        389 ASMAAISARLIIERLYGMQDQLM-DYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENF  467 (535)
Q Consensus       389 ~~~A~~~g~~aa~~i~g~~~~~~-~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  467 (535)
                      ++.|.+||++||.||++....+. ++..+|+++|++|++|+||+||+||++.+.  ++.+...++....++. .      
T Consensus       319 ~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~--~~~~~~~~~~~~~~~~-~------  389 (466)
T PRK07818        319 AHVAEAQGVVAAETIAGAETLELGDYRMMPRATFCQPQVASFGLTEEQAREEGY--DVKVAKFPFTANGKAH-G------  389 (466)
T ss_pred             HhHHHHHHHHHHHHHcCCCCCccCccCCCCeEEECCCCeEEEeCCHHHHHhCCC--cEEEEEEECCccchhh-h------
Confidence            99999999999999998654444 788899999999999999999999998843  6777777776555543 1      


Q ss_pred             hhhhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461        468 VKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT  535 (535)
Q Consensus       468 ~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~  535 (535)
                                      .+.+.||+||++|++|++|||+|++|++|+|+|+.+++||++++|++||.++
T Consensus       390 ----------------~~~~~g~~Klv~~~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~  441 (466)
T PRK07818        390 ----------------LGDPTGFVKLVADAKYGELLGGHLIGPDVSELLPELTLAQKWDLTAEELARN  441 (466)
T ss_pred             ----------------cCCCCeEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcC
Confidence                            1257899999999999999999999999999999999999999999999864

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=100.00  E-value=1.3e-59  Score=500.56  Aligned_cols=414  Identities=20%  Similarity=0.194  Sum_probs=343.5

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccc---cccccccc----cccchhhccccccc-c---cccccCH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRK---KRRLYYPV----AMSDLELEQDSTSA-L---NVTIRNW  157 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~---~~l~~~~~----~i~~~~~~~~~~~~-~---~~~~~~~  157 (535)
                      .+++|||+|++|+.+|......+.+|+|||++. +++..   +-+|...+    .+.........+.. .   ....+||
T Consensus         2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~-~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~   80 (466)
T PRK07845          2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDG-LGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARVDL   80 (466)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC-CCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccccCH
Confidence            368999999999999999988899999999875 32211   01221100    00000001111111 0   1336799


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEE----ecCCEEEEc---e--eEEEcceEEEeeCceecC-CCCC--
Q psy14461        158 NAATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAF----TNPHTIKLS---N--RSVTGFNFLLAVERRCLP-EPRN--  225 (535)
Q Consensus       158 ~~l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~----~~~~~v~~~---~--~~~~~d~lViATGs~p~~-~i~G--  225 (535)
                      ..+..++++..+.+...+...++..||+++.|++.+    .+++++.+.   +  .++.||+||||||++|.. ++++  
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p~~~p~~~~~  160 (466)
T PRK07845         81 PAVNARVKALAAAQSADIRARLEREGVRVIAGRGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPRILPTAEPD  160 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCCCCCCCCCCC
Confidence            999999999998888788888999999999999998    677887773   2  269999999999999987 6544  


Q ss_pred             -CceechhhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceE
Q psy14461        226 -SALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCV  302 (535)
Q Consensus       226 -~~v~~~~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~  302 (535)
                       +.+++..+++.+...+++++|||+|++|+|+|..|+++|.+||++++ +++++.+++++.+.+.+.|+++||++ ++++
T Consensus       161 ~~~v~~~~~~~~~~~~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~L~~~gV~i~~~~~  240 (466)
T PRK07845        161 GERILTWRQLYDLDELPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGEDADAAEVLEEVFARRGMTVLKRSR  240 (466)
T ss_pred             CceEEeehhhhcccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCCCCHHHHHHHHHHHHHCCcEEEcCCE
Confidence             56888888888888889999999999999999999999999999999 99999999999999999999999999 9999


Q ss_pred             EEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcC
Q psy14461        303 IEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIV  382 (535)
Q Consensus       303 v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~  382 (535)
                      +++++.+ ++.+.+.+.   +|+  ++++|.|++++|++||++.+++++++++++++|+|.||+++||+.|+|||+|||+
T Consensus       241 v~~v~~~-~~~~~v~~~---~g~--~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~i~Vd~~~~Ts~~~IyA~GD~~  314 (466)
T PRK07845        241 AESVERT-GDGVVVTLT---DGR--TVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVDRVSRTSVPGIYAAGDCT  314 (466)
T ss_pred             EEEEEEe-CCEEEEEEC---CCc--EEEecEEEEeecCCcCCCCCCchhhCceECCCCcEeECCCcccCCCCEEEEeecc
Confidence            9999865 355666663   676  7999999999999999998767888999999999999999999999999999999


Q ss_pred             CCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCC
Q psy14461        383 HGKPNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPL  462 (535)
Q Consensus       383 ~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  462 (535)
                       +.+++++.|..||++||.||++....+.++..+|+++|++|++|+||+||+||++.+.  ++.+...++....++. . 
T Consensus       315 -~~~~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~vf~~p~~a~vGlte~~a~~~g~--~~~~~~~~~~~~~~~~-~-  389 (466)
T PRK07845        315 -GVLPLASVAAMQGRIAMYHALGEAVSPLRLKTVASNVFTRPEIATVGVSQAAIDSGEV--PARTVMLPLATNPRAK-M-  389 (466)
T ss_pred             -CCccchhHHHHHHHHHHHHHcCCCCCcCCCCCCCEEEeCCCcceeecCCHHHHHhCCC--ceEEEEEecccCchhh-h-
Confidence             8889999999999999999998654556788899999999999999999999998743  5777666665544432 1 


Q ss_pred             CCcchhhhhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461        463 LPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT  535 (535)
Q Consensus       463 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~  535 (535)
                                           .+.++||+||++|++|++|||+|++|++|.|+|+.+++||++++|++||.++
T Consensus       390 ---------------------~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~  441 (466)
T PRK07845        390 ---------------------SGLRDGFVKLFCRPGTGVVIGGVVVAPRASELILPIALAVQNRLTVDDLAQT  441 (466)
T ss_pred             ---------------------cCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcC
Confidence                                 1257899999999999999999999999999999999999999999999764

>TIGR03452 mycothione_red mycothione reductase

Probab=100.00  E-value=9.2e-60  Score=499.55  Aligned_cols=411  Identities=18%  Similarity=0.239  Sum_probs=332.6

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCc------ccccccccccccccccchhhccccccc-ccccccCHHHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSH------LSFRKKRRLYYPVAMSDLELEQDSTSA-LNVTIRNWNAAT  161 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~------~~~~~~~l~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~l~  161 (535)
                      +|++|||+|++|..++.++  .+.+|+|||++..      .++.|.+...+...+.........+.. .....+||.+++
T Consensus         3 yD~vvIG~G~~g~~aa~~~--~g~~V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~~~   80 (452)
T TIGR03452         3 YDLIIIGTGSGNSIPDPRF--ADKRIAIVEKGTFGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAEIDSVRWPDIV   80 (452)
T ss_pred             cCEEEECCCHHHHHHHHHH--CCCeEEEEeCCCCCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCCCCccCHHHHH
Confidence            5899999999999998765  4889999998641      222222222221111111111111111 123467999999


Q ss_pred             HHHHH-HHHHHHHH-HHHHH--HhcCcEEEEeEEEEecCCEEEEce-eEEEcceEEEeeCceecC-CCCC---Cceechh
Q psy14461        162 KLIKR-FCIRAKND-SMREL--KALGIDIVRTAAAFTNPHTIKLSN-RSVTGFNFLLAVERRCLP-EPRN---SALISAD  232 (535)
Q Consensus       162 ~~~~~-~~~~~~~~-~~~~~--~~~gV~~~~g~~~~~~~~~v~~~~-~~~~~d~lViATGs~p~~-~i~G---~~v~~~~  232 (535)
                      +++.+ ..+.+... ....+  +..||+++.|++.+.+.++|.+.+ .+++||+||||||++|.. ++.+   ..+++++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~V~~~~g~~~~~d~lIiATGs~p~~p~~~~~~~~~~~~~~  160 (452)
T TIGR03452        81 SRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFVGPRTLRTGDGEEITGDQIVIAAGSRPYIPPAIADSGVRYHTNE  160 (452)
T ss_pred             HHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEecCCEEEECCCcEEEeCEEEEEECCCCCCCCCCCCCCCEEEcHH
Confidence            99887 66666443 22222  447999999999999999999854 679999999999999987 5433   3478999


Q ss_pred             hHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeC
Q psy14461        233 DLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSF  310 (535)
Q Consensus       233 ~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~  310 (535)
                      +++.+...+++++|||+|++|+|+|..|+++|.+||++++ +.+++.+++++.+.+.+.+ +.+|++ ++.++++++.+ 
T Consensus       161 ~~~~l~~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~~d~~~~~~l~~~~-~~gI~i~~~~~V~~i~~~-  238 (452)
T TIGR03452       161 DIMRLPELPESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRHLDEDISDRFTEIA-KKKWDIRLGRNVTAVEQD-  238 (452)
T ss_pred             HHHhhhhcCCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccccccCHHHHHHHHHHH-hcCCEEEeCCEEEEEEEc-
Confidence            9998888899999999999999999999999999999999 8888989999998887755 468999 99999999875 


Q ss_pred             CCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCCCcHH
Q psy14461        311 DGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNAS  390 (535)
Q Consensus       311 ~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~~~~~  390 (535)
                      ++.+.+++.   +|+  ++++|.+++++|++||+++++++.+|++++++|+|.||+++||+.|+|||+|||+ +.+++.+
T Consensus       239 ~~~v~v~~~---~g~--~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~~IyA~GD~~-~~~~l~~  312 (452)
T TIGR03452       239 GDGVTLTLD---DGS--TVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDEYGRTSARGVWALGDVS-SPYQLKH  312 (452)
T ss_pred             CCeEEEEEc---CCC--EEEcCEEEEeeccCcCCCCcCchhcCeeECCCCcEeeCCCcccCCCCEEEeeccc-CcccChh
Confidence            345566653   566  7999999999999999999877888999999999999999999999999999999 8889999


Q ss_pred             HHHHHHHHHHHHHhCCCC-CCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcchhh
Q psy14461        391 MAAISARLIIERLYGMQD-QLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVK  469 (535)
Q Consensus       391 ~A~~~g~~aa~~i~g~~~-~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (535)
                      .|.+||++||+||++... ...++..+|+++|++|++++||+||+||++.+.  ++.+...++....++. +.       
T Consensus       313 ~A~~~g~~~a~ni~~~~~~~~~~~~~~p~~i~t~p~ia~vGlte~ea~~~g~--~~~~~~~~~~~~~~~~-~~-------  382 (452)
T TIGR03452       313 VANAEARVVKHNLLHPNDLRKMPHDFVPSAVFTHPQIATVGLTEQEAREAGH--DITVKIQNYGDVAYGW-AM-------  382 (452)
T ss_pred             HHHHHHHHHHHHhcCCCCcccCCCCCCCeEEECCCCeeeeeCCHHHHHhcCC--CeEEEEecCCchhhHh-hc-------
Confidence            999999999999998643 356778899999999999999999999998843  6777666666554432 11       


Q ss_pred             hhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcC
Q psy14461        470 LVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDG  534 (535)
Q Consensus       470 ~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~  534 (535)
                                     +++.||+||++|++|++|||+|++|++|.|+|+.+++||++++|++||.+
T Consensus       383 ---------------~~~~g~~Klv~d~~t~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~  432 (452)
T TIGR03452       383 ---------------EDTTGFCKLIADRDTGKLLGAHIIGPQASSLIQPLITAMAFGLDAREMAR  432 (452)
T ss_pred             ---------------CCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhh
Confidence                           25689999999999999999999999999999999999999999999975

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=100.00  E-value=1e-59  Score=511.45  Aligned_cols=439  Identities=16%  Similarity=0.180  Sum_probs=345.6

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCC-ccc-------ccccccccccccccchhhcc---ccccc-------
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGS-HLS-------FRKKRRLYYPVAMSDLELEQ---DSTSA-------  149 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~-~~~-------~~~~~l~~~~~~i~~~~~~~---~~~~~-------  149 (535)
                      -+|++|||+|++|..+|+.+...+.+|+|||++. .++       +.|...+.++........+.   ..+..       
T Consensus       116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn~GCiPsK~l~~~a~~~~~~~~~~~~~~~Gi~~~~~~~  195 (659)
T PTZ00153        116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYGIYTNAFKN  195 (659)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeEeCCcchHHHHHHHHHHHHHHhccccccCCeeeccccc
Confidence            3689999999999999999999999999999752 232       22222222211110111110   01110       


Q ss_pred             -----------c-cccccCHHHHHHHHHHHHHHHHHHHHHHHHhcC-------cEEEEeEEEEecCCEEEEc--eeEEEc
Q psy14461        150 -----------L-NVTIRNWNAATKLIKRFCIRAKNDSMRELKALG-------IDIVRTAAAFTNPHTIKLS--NRSVTG  208 (535)
Q Consensus       150 -----------~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g-------V~~~~g~~~~~~~~~v~~~--~~~~~~  208 (535)
                                 . ....+||.++.++++..++.++..+...++..+       |+++.|.+.+.++++|.+.  +.++.|
T Consensus       196 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~a~f~~~~~v~v~~~g~~i~a  275 (659)
T PTZ00153        196 GKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHIVDKNTIKSEKSGKEFKV  275 (659)
T ss_pred             cccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeEEEEecCCeEEEccCCEEEEC
Confidence                       1 234679999999999999999888888888875       8999999999999998873  468999


Q ss_pred             ceEEEeeCceecC-CCCC---CceechhhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHH
Q psy14461        209 FNFLLAVERRCLP-EPRN---SALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEM  283 (535)
Q Consensus       209 d~lViATGs~p~~-~i~G---~~v~~~~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~  283 (535)
                      |+||||||++|.. ++++   ..++++++++.+...+++|+|||||++|+|+|..|+++|.+||++++ +++++.+++++
T Consensus       276 d~lIIATGS~P~~P~~~~~~~~~V~ts~d~~~l~~lpk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~~~d~ei  355 (659)
T PTZ00153        276 KNIIIATGSTPNIPDNIEVDQKSVFTSDTAVKLEGLQNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLPLLDADV  355 (659)
T ss_pred             CEEEEcCCCCCCCCCCCCCCCCcEEehHHhhhhhhcCCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcccccCCHHH
Confidence            9999999999987 6555   56899999988888899999999999999999999999999999999 99999999999


Q ss_pred             HHHHHHhh-hcCCeEE-cceEEEEEEEeCCC-cEEEEEecCCCC----------CceEEEcCEEEEccCCCCCCCCCCcc
Q psy14461        284 VRILLSSL-TKAGVSI-QCCVIEKVISSFDG-MKGVRGFHPESK----------EPFADVFKTVVNAMEKKFDFAALNLH  350 (535)
Q Consensus       284 ~~~~~~~l-~~~gV~i-~~~~v~~i~~~~~~-~~~v~~~~~~~G----------~~~~~~~D~vi~a~G~~p~~~~l~l~  350 (535)
                      .+.+.+.+ +++||++ +++.|++|+..+++ .+.+.+.+..++          +.+++++|.||+|+|++||++.++++
T Consensus       356 s~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~L~l~  435 (659)
T PTZ00153        356 AKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNNLGLD  435 (659)
T ss_pred             HHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccCCccCCch
Confidence            99998875 6799999 99999999865222 244544311111          11379999999999999999998778


Q ss_pred             ccCeeecCCCceEcCCCCCcC------CCCEEEeCCcCCCCCCcHHHHHHHHHHHHHHHhCCC------------CCCCC
Q psy14461        351 HIGVDIKKKSYVVCNEKDQTS------VGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQ------------DQLMD  412 (535)
Q Consensus       351 ~~gl~~~~~G~i~vd~~~~T~------~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g~~------------~~~~~  412 (535)
                      ..+++++ +|+|.||++|||+      +|+|||+|||+ +.+++++.|.+||++||+||++..            ...++
T Consensus       436 ~~gi~~~-~G~I~VDe~lqTs~~~~~~v~~IYAiGDv~-g~~~La~~A~~qg~~aa~ni~g~~~~~~~~~~~~~~~~~~~  513 (659)
T PTZ00153        436 KLKIQMK-RGFVSVDEHLRVLREDQEVYDNIFCIGDAN-GKQMLAHTASHQALKVVDWIEGKGKENVNINVENWASKPII  513 (659)
T ss_pred             hcCCccc-CCEEeECCCCCcCCCCCCCCCCEEEEEecC-CCccCHHHHHHHHHHHHHHHcCCCccccccccccccccccc
Confidence            8888886 5999999999997      69999999999 889999999999999999999862            34567


Q ss_pred             CCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcchhhhhhccC----Ccccccc--cccC
Q psy14461        413 YSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVCLKG----GERVLGI--HVIG  486 (535)
Q Consensus       413 ~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~--~~~~  486 (535)
                      +..+|+++|++|++|+||+||+||++.+...++.+....|....+++ ....  |    .+++    +++..|-  ..++
T Consensus       514 ~~~iP~~ift~PeiA~VGlTE~eA~~~g~~~~v~v~~~~~~~~~ra~-~~~~--~----~~p~~~~~~~y~~g~~~~~~~  586 (659)
T PTZ00153        514 YKNIPSVCYTTPELAFIGLTEKEAKELYPPDNVGVEISFYKANSKVL-CENN--I----SFPNNSKNNSYNKGKYNTVDN  586 (659)
T ss_pred             cCcCCEEEECcCceEEeeCCHHHHHhcCCCcceEEEEEEecccchhh-hccc--c----ccccccccccccccccccccC
Confidence            88899999999999999999999999853335666667776655543 1100  0    0011    1111110  0113


Q ss_pred             cceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461        487 QNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT  535 (535)
Q Consensus       487 ~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~  535 (535)
                      +.||+||++|++|++|||+|++|++|.|+|+.+++||++++|++||.++
T Consensus       587 ~~G~vKli~d~~t~rILGa~ivG~~A~elI~~~a~aI~~~~tv~dl~~~  635 (659)
T PTZ00153        587 TEGMVKIVYLKDTKEILGMFIVGSYASILIHEGVLAINLKLSVKDLAHM  635 (659)
T ss_pred             CceEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhC
Confidence            7899999999999999999999999999999999999999999999864

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=100.00  E-value=1.8e-59  Score=499.10  Aligned_cols=413  Identities=19%  Similarity=0.234  Sum_probs=340.5

Q ss_pred             EEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcc------cccccccccccccccchhhccc--cccc-ccccccCHHHH
Q psy14461         90 YLDRIGDEGILLEEELKRQTNQRRDELQERGSHL------SFRKKRRLYYPVAMSDLELEQD--STSA-LNVTIRNWNAA  160 (535)
Q Consensus        90 ~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~------~~~~~~l~~~~~~i~~~~~~~~--~~~~-~~~~~~~~~~l  160 (535)
                      +++|||+|++|+.+|++....+.+|+|||++..-      ++.+.+....+..+........  +... .....+||.++
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~   81 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDWKQM   81 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCHHHH
Confidence            6899999999999999999899999999997521      1111111111000000000001  1111 11346799999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEce----eEEEcceEEEeeCceecC-CCCC---Cceechh
Q psy14461        161 TKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSN----RSVTGFNFLLAVERRCLP-EPRN---SALISAD  232 (535)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~----~~~~~d~lViATGs~p~~-~i~G---~~v~~~~  232 (535)
                      ..++++.++++...+...++..+|+++.|++.+.+++++.+..    .+++||+||||||++|+. ++++   ..+++++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~~~~~~~~d~lviATGs~p~~~p~~~~~~~~v~~~~  161 (458)
T PRK06912         82 QARKSQIVTQLVQGIQYLMKKNKIKVIQGKASFETDHRVRVEYGDKEEVVDAEQFIIAAGSEPTELPFAPFDGKWIINSK  161 (458)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEccCCEEEEeeCCCcEEEECCEEEEeCCCCCCCCCCCCCCCCeEEcch
Confidence            9999999999888888888899999999999999999888742    479999999999999987 7776   4588899


Q ss_pred             hHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeC
Q psy14461        233 DLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSF  310 (535)
Q Consensus       233 ~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~  310 (535)
                      +++.+...+++++|||||++|+|+|..|+++|.+||++++ +++++.+++++.+.+.+.|+++||++ +++++++++.+ 
T Consensus       162 ~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~~d~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~-  240 (458)
T PRK06912        162 HAMSLPSIPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPGEDEDIAHILREKLENDGVKIFTGAALKGLNSY-  240 (458)
T ss_pred             HHhCccccCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCccccHHHHHHHHHHHHHCCCEEEECCEEEEEEEc-
Confidence            9998888899999999999999999999999999999999 99999999999999999999999999 99999999864 


Q ss_pred             CCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCCCcHH
Q psy14461        311 DGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNAS  390 (535)
Q Consensus       311 ~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~~~~~  390 (535)
                      +..+  .+..  +|+..++++|.|++|+|++||++.++++..+++++++| |.||+++||+.|+|||+|||+ +.+++++
T Consensus       241 ~~~v--~~~~--~g~~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~~g-i~Vd~~~~ts~~~VyA~GD~~-~~~~la~  314 (458)
T PRK06912        241 KKQA--LFEY--EGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKG-ISVNEHMQTNVPHIYACGDVI-GGIQLAH  314 (458)
T ss_pred             CCEE--EEEE--CCceEEEEeCEEEEecCCccCCCCCCchhcCceecCCC-EEeCCCeecCCCCEEEEeecC-CCcccHH
Confidence            2333  3332  45445799999999999999998876678888888777 999999999999999999999 8899999


Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcchhhh
Q psy14461        391 MAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKL  470 (535)
Q Consensus       391 ~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  470 (535)
                      .|.+||++||.||+|.+ ...++..+|+++|++|++++||+||+||++++.  ++.+....+....++.           
T Consensus       315 ~A~~~g~~aa~~~~g~~-~~~~~~~~p~~v~~~p~~a~vGlte~~a~~~g~--~~~~~~~~~~~~~~~~-----------  380 (458)
T PRK06912        315 VAFHEGTTAALHASGED-VKVNYHAVPRCIYTSPEIASVGLTEKQAREQYG--DIRIGEFPFTANGKAL-----------  380 (458)
T ss_pred             HHHHHHHHHHHHHcCCC-CCCCcCCCCeEEecCchhEEeeCCHHHHHHCCC--CeEEEEEecCcchhHh-----------
Confidence            99999999999999854 345677899999999999999999999998854  6777666665544433           


Q ss_pred             hhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461        471 VCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT  535 (535)
Q Consensus       471 ~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~  535 (535)
                                  +.+.+.||+||++|++|++|||+|++|++|.|+|+.+++||++++|++||.++
T Consensus       381 ------------~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~  433 (458)
T PRK06912        381 ------------IIGEQTGKVKVIVEPKYQEIVGISIIGPRATELIGQGTVMIHTEVTADIMEDF  433 (458)
T ss_pred             ------------hcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhC
Confidence                        11257899999999999999999999999999999999999999999999864

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=100.00  E-value=3.5e-59  Score=498.27  Aligned_cols=414  Identities=19%  Similarity=0.201  Sum_probs=346.3

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccccc---cccccccc-ccchhh---ccccccc-ccccccCHHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKK---RRLYYPVA-MSDLEL---EQDSTSA-LNVTIRNWNAA  160 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~---~l~~~~~~-i~~~~~---~~~~~~~-~~~~~~~~~~l  160 (535)
                      ++|+|||+|++|+.+|+.+...+.+|+|||+.+.+++...   .+|..... ......   ..+.+.. .....++|.++
T Consensus         6 yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   85 (461)
T PRK05249          6 YDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKLRITFADL   85 (461)
T ss_pred             ccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcCccCHHHH
Confidence            6899999999999999999999999999999765543311   12211000 000000   0000100 11335689999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEce-----eEEEcceEEEeeCceecC-CCCC---Cceech
Q psy14461        161 TKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSN-----RSVTGFNFLLAVERRCLP-EPRN---SALISA  231 (535)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~-----~~~~~d~lViATGs~p~~-~i~G---~~v~~~  231 (535)
                      .++.+..++++...+...+++.+|+++.|++.+.+.+++++..     .++.||+||||||++|.. ++++   ..++++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviATGs~p~~p~~~~~~~~~v~~~  165 (461)
T PRK05249         86 LARADHVINKQVEVRRGQYERNRVDLIQGRARFVDPHTVEVECPDGEVETLTADKIVIATGSRPYRPPDVDFDHPRIYDS  165 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCCCCCCCCeEEcH
Confidence            9999988888877788888999999999999999988877742     379999999999999987 6665   568999


Q ss_pred             hhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEe
Q psy14461        232 DDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISS  309 (535)
Q Consensus       232 ~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~  309 (535)
                      ++++.+...+++++|||+|++|+|+|..|+++|.+||++++ +++++.+++++.+.+.+.++++||++ +++.+++++..
T Consensus       166 ~~~~~~~~~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~  245 (461)
T PRK05249        166 DSILSLDHLPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSFLDDEISDALSYHLRDSGVTIRHNEEVEKVEGG  245 (461)
T ss_pred             HHhhchhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCcCCHHHHHHHHHHHHHcCCEEEECCEEEEEEEe
Confidence            99988888899999999999999999999999999999999 99999999999999999999999999 99999999875


Q ss_pred             CCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCCCcH
Q psy14461        310 FDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNA  389 (535)
Q Consensus       310 ~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~~~~  389 (535)
                       ++.+.+++   .+|+  ++++|.|++|+|++||++.+.++..+++++++|+|.||+++||+.|+|||+|||+ +.++++
T Consensus       246 -~~~~~v~~---~~g~--~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~IyAiGD~~-~~~~~~  318 (461)
T PRK05249        246 -DDGVIVHL---KSGK--KIKADCLLYANGRTGNTDGLNLENAGLEADSRGQLKVNENYQTAVPHIYAVGDVI-GFPSLA  318 (461)
T ss_pred             -CCeEEEEE---CCCC--EEEeCEEEEeecCCccccCCCchhhCcEecCCCcEeeCCCcccCCCCEEEeeecC-CCcccH
Confidence             34555665   3566  7999999999999999998767888999999999999999999999999999999 888999


Q ss_pred             HHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcchhh
Q psy14461        390 SMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVK  469 (535)
Q Consensus       390 ~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (535)
                      +.|.+||++||.||+|.. ...++..+|+++|+.|++|+||+||+||++.+.  ++.+...++....++. .        
T Consensus       319 ~~A~~~g~~aa~~i~g~~-~~~~~~~~p~~i~~~p~ia~vG~te~~a~~~g~--~~~~~~~~~~~~~~~~-~--------  386 (461)
T PRK05249        319 SASMDQGRIAAQHAVGEA-TAHLIEDIPTGIYTIPEISSVGKTEQELTAAKV--PYEVGRARFKELARAQ-I--------  386 (461)
T ss_pred             hHHHHHHHHHHHHHcCCC-cccccCCCCeEEECCCcceEecCCHHHHHHcCC--CeEEEEEcccccccee-e--------
Confidence            999999999999999754 346778899999999999999999999998844  6777776776555543 1        


Q ss_pred             hhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461        470 LVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT  535 (535)
Q Consensus       470 ~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~  535 (535)
                                    .+.+.||+||++|++|++|||+|++|++|+|+|+.+++||++++|++||.++
T Consensus       387 --------------~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~  438 (461)
T PRK05249        387 --------------AGDNVGMLKILFHRETLEILGVHCFGERATEIIHIGQAIMEQKGTIEYFVNT  438 (461)
T ss_pred             --------------cCCCCcEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcC
Confidence                          1256899999999999999999999999999999999999999999999864

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=100.00  E-value=3.6e-59  Score=495.03  Aligned_cols=402  Identities=17%  Similarity=0.213  Sum_probs=333.5

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCc-ccccc---cccccccccccchhhcccccccccccccCHHHHHHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSH-LSFRK---KRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLI  164 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~-~~~~~---~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~  164 (535)
                      +|++|||+|++|+.+|+++...+.+|+|||+++. +++..   ..+|.... +..           .....+|..+..++
T Consensus         4 yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gcip~k~l-~~~-----------~~~~~~~~~~~~~~   71 (441)
T PRK08010          4 YQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTL-VHD-----------AQQHTDFVRAIQRK   71 (441)
T ss_pred             CCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeeccccchHHH-HHH-----------hccCCCHHHHHHHH
Confidence            6899999999999999999989999999999763 33221   11221100 000           01245788778777


Q ss_pred             HHHHHHHHHHHHHHH-HhcCcEEEEeEEEEecCCEEEEc---e-eEEEcceEEEeeCceecC-CCCC----CceechhhH
Q psy14461        165 KRFCIRAKNDSMREL-KALGIDIVRTAAAFTNPHTIKLS---N-RSVTGFNFLLAVERRCLP-EPRN----SALISADDL  234 (535)
Q Consensus       165 ~~~~~~~~~~~~~~~-~~~gV~~~~g~~~~~~~~~v~~~---~-~~~~~d~lViATGs~p~~-~i~G----~~v~~~~~~  234 (535)
                      +..++.+.......+ +..+|+++.|++.+++.+++.+.   + .++.||+||||||++|.. ++||    .++++++++
T Consensus        72 ~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~~~v~~~~g~~~~~~d~lviATGs~p~~p~i~G~~~~~~v~~~~~~  151 (441)
T PRK08010         72 NEVVNFLRNKNFHNLADMPNIDVIDGQAEFINNHSLRVHRPEGNLEIHGEKIFINTGAQTVVPPIPGITTTPGVYDSTGL  151 (441)
T ss_pred             HHHHHHHHHhHHHHHhhcCCcEEEEEEEEEecCCEEEEEeCCCeEEEEeCEEEEcCCCcCCCCCCCCccCCCCEEChhHh
Confidence            766666654333334 34599999999999988887763   2 369999999999999988 8998    347888888


Q ss_pred             HhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCC
Q psy14461        235 FRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDG  312 (535)
Q Consensus       235 ~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~  312 (535)
                      +.+...+++++|||+|++|+|+|..|+++|.+||++++ +.+++.+++++.+.+.+.|+++||++ +++++++++.+ ++
T Consensus       152 ~~~~~~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~-~~  230 (441)
T PRK08010        152 LNLKELPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPREDRDIADNIATILRDQGVDIILNAHVERISHH-EN  230 (441)
T ss_pred             hcccccCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCCcCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CC
Confidence            88777889999999999999999999999999999999 99999899999999999999999999 99999999875 34


Q ss_pred             cEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCCCcHHHH
Q psy14461        313 MKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMA  392 (535)
Q Consensus       313 ~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~~~~~~A  392 (535)
                      .+.++.   .+|   ++++|.+++|+|++||++.+.++.++++++++|+|.||+++||+.|+|||+|||+ +.+++.+.|
T Consensus       231 ~v~v~~---~~g---~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~~IyA~GD~~-~~~~~~~~a  303 (441)
T PRK08010        231 QVQVHS---EHA---QLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKYLHTTADNIWAMGDVT-GGLQFTYIS  303 (441)
T ss_pred             EEEEEE---cCC---eEEeCEEEEeecCCcCCCCcCchhcCcEECCCCcEEECCCcccCCCCEEEeeecC-CCccchhHH
Confidence            455544   234   5899999999999999998766788999998999999999999999999999999 889999999


Q ss_pred             HHHHHHHHHHHhCC-CCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcchhhhh
Q psy14461        393 AISARLIIERLYGM-QDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLV  471 (535)
Q Consensus       393 ~~~g~~aa~~i~g~-~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  471 (535)
                      ..||++++.||+|. .....++..+|+++|++|++|+||+||+||++.+.  ++.+...++....++. .          
T Consensus       304 ~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~p~ia~vGlte~~a~~~g~--~~~~~~~~~~~~~~~~-~----------  370 (441)
T PRK08010        304 LDDYRIVRDELLGEGKRSTDDRKNVPYSVFMTPPLSRVGMTEEQARESGA--DIQVVTLPVAAIPRAR-V----------  370 (441)
T ss_pred             HHHHHHHHHHHcCCCCcccCccCCCCEEEECCCCceeeeCCHHHHHHcCC--CeEEEEEecCcChhhh-h----------
Confidence            99999999999985 33345778899999999999999999999998843  6777777777655543 1          


Q ss_pred             hccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461        472 CLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT  535 (535)
Q Consensus       472 ~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~  535 (535)
                                  .+.+.||+||++|++|++|||+|++|++|+|+|+.++++|++++|++||.++
T Consensus       371 ------------~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~  422 (441)
T PRK08010        371 ------------MNDTRGVLKAIVDNKTQRILGASLLCVDSHEMINIVKMVMDAGLPYSILRDQ  422 (441)
T ss_pred             ------------cCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhc
Confidence                        1256899999999999999999999999999999999999999999999753

>KOG0405|consensus

Probab=100.00  E-value=1.8e-60  Score=455.36  Aligned_cols=419  Identities=24%  Similarity=0.384  Sum_probs=370.0

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcc-------cccccccccccccccchhhcc--cccccccccccCHH
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHL-------SFRKKRRLYYPVAMSDLELEQ--DSTSALNVTIRNWN  158 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~-------~~~~~~l~~~~~~i~~~~~~~--~~~~~~~~~~~~~~  158 (535)
                      .++..+||+|..|+++|.+....+.++.|+|..-.+       ++.|..+.+|....+.+....  .|+..-....+||.
T Consensus        20 ~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~fdW~   99 (478)
T KOG0405|consen   20 DFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGSFDWK   99 (478)
T ss_pred             ccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccccCCcHH
Confidence            467789999999999999999999999999988433       333345566633233333222  24444346789999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEc--e---eEEEcceEEEeeCceecC-CCCC-Cceech
Q psy14461        159 AATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLS--N---RSVTGFNFLLAVERRCLP-EPRN-SALISA  231 (535)
Q Consensus       159 ~l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~--~---~~~~~d~lViATGs~p~~-~i~G-~~v~~~  231 (535)
                      .+.+.+..++.+++.-++..+.+.+|+++.|++.+.++.+|+++  +   ..+++++++||||.+|.+ .||| +.-+++
T Consensus       100 ~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v~V~~~d~~~~~Ytak~iLIAtGg~p~~PnIpG~E~gidS  179 (478)
T KOG0405|consen  100 VIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGEVEVEVNDGTKIVYTAKHILIATGGRPIIPNIPGAELGIDS  179 (478)
T ss_pred             HHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCCceEEEecCCeeEEEecceEEEEeCCccCCCCCCchhhcccc
Confidence            99999999999999999999999999999999999999877663  3   348999999999999999 9999 888999


Q ss_pred             hhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEe
Q psy14461        232 DDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISS  309 (535)
Q Consensus       232 ~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~  309 (535)
                      +.++++++.|+|++|||+|++|+|+|..|+.+|.+++++-| +.+|+.||+.+++.+.+.|+.+||++ .++.++++...
T Consensus       180 Dgff~Lee~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvLR~FD~~i~~~v~~~~~~~ginvh~~s~~~~v~K~  259 (478)
T KOG0405|consen  180 DGFFDLEEQPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVLRGFDEMISDLVTEHLEGRGINVHKNSSVTKVIKT  259 (478)
T ss_pred             ccccchhhcCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhhcchhHHHHHHHHHHhhhcceeecccccceeeeec
Confidence            99999999999999999999999999999999999999999 99999999999999999999999999 99999999876


Q ss_pred             CCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCCCcH
Q psy14461        310 FDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNA  389 (535)
Q Consensus       310 ~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~~~~  389 (535)
                      .++...+...   .|+  ...+|.++||+|+.||+..|++++.|++++++|.|.||+|.+||+|+||++||++ +...+.
T Consensus       260 ~~g~~~~i~~---~~~--i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivDeYq~Tnvp~I~avGDv~-gk~~LT  333 (478)
T KOG0405|consen  260 DDGLELVITS---HGT--IEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVDEYQNTNVPSIWAVGDVT-GKINLT  333 (478)
T ss_pred             CCCceEEEEe---ccc--cccccEEEEEecCCCCcccccchhcceeeCCCCCEEEeccccCCCCceEEecccc-CcEecc
Confidence            4454443332   564  4569999999999999999999999999999999999999999999999999999 999999


Q ss_pred             HHHHHHHHHHHHHHhC-CCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcchh
Q psy14461        390 SMAAISARLIIERLYG-MQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFV  468 (535)
Q Consensus       390 ~~A~~~g~~aa~~i~g-~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  468 (535)
                      ++|+.+|+..|+.+++ .+....+|.++|.++|+.|++++|||||+||.++||+.++.++.+.|.++.+++ ..+     
T Consensus       334 PVAiaagr~la~rlF~~~~~~kldY~nVp~vVFshP~igtVGLtE~EAiekyg~~~i~vy~s~F~pm~~a~-~~~-----  407 (478)
T KOG0405|consen  334 PVAIAAGRKLANRLFGGGKDTKLDYENVPCVVFSHPPIGTVGLTEEEAIEKYGKGDIKVYTSKFNPMKYAM-SGR-----  407 (478)
T ss_pred             hHHHhhhhhHHHHhhcCCCCCccccccCceEEEecCCcccccCCHHHHHHHhCccceEEEecCCchhHhHh-hcC-----
Confidence            9999999999999998 566778999999999999999999999999999999889999999998887776 443     


Q ss_pred             hhhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461        469 KLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT  535 (535)
Q Consensus       469 ~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~  535 (535)
                                       ..+.++||++..++.+++|+||+|+.+.|+++.|+.|+++|+|..|+.++
T Consensus       408 -----------------k~kt~mKlvc~~~~eKVvG~hm~G~~s~EilQGf~VAvKmGaTKadFD~t  457 (478)
T KOG0405|consen  408 -----------------KEKTLMKLVCAGKSEKVVGVHMCGDDSAEILQGFAVAVKMGATKADFDST  457 (478)
T ss_pred             -----------------CcceEEEEEEecCCCcEEEEEEecCCcHHHHhhhhhheecCcchhhhccc
Confidence                             36889999999999999999999999999999999999999999998764

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=1.1e-58  Score=494.29  Aligned_cols=414  Identities=22%  Similarity=0.260  Sum_probs=343.7

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccc---cccccccc-cccc---hhhccccccc-ccccccCHHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRK---KRRLYYPV-AMSD---LELEQDSTSA-LNVTIRNWNAA  160 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~---~~l~~~~~-~i~~---~~~~~~~~~~-~~~~~~~~~~l  160 (535)
                      ++++|||+||+|+.+|+.+...+.+|+|+|++. +++..   +-+|.... ..+.   .....+.+.. .....++|.++
T Consensus         5 yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   83 (462)
T PRK06416          5 YDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAENVGIDFKKV   83 (462)
T ss_pred             ccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCCCccCHHHH
Confidence            689999999999999999998999999999986 43321   11221100 0000   0000111110 11235689999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEc----eeEEEcceEEEeeCceecCCCCC-----Cceech
Q psy14461        161 TKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLS----NRSVTGFNFLLAVERRCLPEPRN-----SALISA  231 (535)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~----~~~~~~d~lViATGs~p~~~i~G-----~~v~~~  231 (535)
                      .++.+..++.+...+...+++.||+++.+++.+.+++++++.    +.++.||+||||||++|.. +||     ..++++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~~~~~~~~d~lViAtGs~p~~-~pg~~~~~~~v~~~  162 (462)
T PRK06416         84 QEWKNGVVNRLTGGVEGLLKKNKVDIIRGEAKLVDPNTVRVMTEDGEQTYTAKNIILATGSRPRE-LPGIEIDGRVIWTS  162 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCcEEEEeCEEEEeCCCCCCC-CCCCCCCCCeEEcc
Confidence            999999999988888888889999999999999998888875    2679999999999999875 334     457899


Q ss_pred             hhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEe
Q psy14461        232 DDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISS  309 (535)
Q Consensus       232 ~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~  309 (535)
                      ++++.+...+++++|||||++|+|+|..|+++|.+||++++ +++++.+++++.+.+++.|++.||++ +++++++++.+
T Consensus       163 ~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~  242 (462)
T PRK06416        163 DEALNLDEVPKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPGEDKEISKLAERALKKRGIKIKTGAKAKKVEQT  242 (462)
T ss_pred             hHhhCccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCcCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEe
Confidence            99988877889999999999999999999999999999999 99999999999999999999999999 99999999876


Q ss_pred             CCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCCCcH
Q psy14461        310 FDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNA  389 (535)
Q Consensus       310 ~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~~~~  389 (535)
                       ++.+.+.+.+  +|++.++++|.+++|+|++|++++++++..+++++ +|+|.||+++||+.|+|||+|||+ +.+.++
T Consensus       243 -~~~v~v~~~~--gg~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~-~g~i~vd~~~~t~~~~VyAiGD~~-~~~~~~  317 (462)
T PRK06416        243 -DDGVTVTLED--GGKEETLEADYVLVAVGRRPNTENLGLEELGVKTD-RGFIEVDEQLRTNVPNIYAIGDIV-GGPMLA  317 (462)
T ss_pred             -CCEEEEEEEe--CCeeEEEEeCEEEEeeCCccCCCCCCchhcCCeec-CCEEeECCCCccCCCCEEEeeecC-CCcchH
Confidence             3455666542  34445799999999999999999877788899988 899999999999999999999999 788899


Q ss_pred             HHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcchhh
Q psy14461        390 SMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVK  469 (535)
Q Consensus       390 ~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (535)
                      +.|.+||++||.||++.. ..+++..+|+++|++|++++||+||+||++.+.  ++.+...++....+.. .        
T Consensus       318 ~~A~~~g~~aa~ni~~~~-~~~~~~~~~~~~~~~~~~a~vG~te~~a~~~g~--~~~~~~~~~~~~~~~~-~--------  385 (462)
T PRK06416        318 HKASAEGIIAAEAIAGNP-HPIDYRGIPAVTYTHPEVASVGLTEAKAKEEGF--DVKVVKFPFAGNGKAL-A--------  385 (462)
T ss_pred             HHHHHHHHHHHHHHcCCC-CCCCCCCCCeEEECCCceEEEeCCHHHHHhcCC--CeEEEEEecCcChHhH-h--------
Confidence            999999999999999854 455678899999999999999999999999843  6777776666544443 1        


Q ss_pred             hhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461        470 LVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT  535 (535)
Q Consensus       470 ~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~  535 (535)
                                    .+.++||+||++|++|++|||+|++|++|.|+|+.+++||++++|++||.++
T Consensus       386 --------------~~~~~g~~kli~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~  437 (462)
T PRK06416        386 --------------LGETDGFVKLIFDKKDGEVLGAHMVGARASELIQEAQLAINWEATPEDLALT  437 (462)
T ss_pred             --------------cCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhC
Confidence                          1257899999999999999999999999999999999999999999999864

>PTZ00052 thioredoxin reductase; Provisional

Probab=100.00  E-value=1.3e-58  Score=495.61  Aligned_cols=431  Identities=25%  Similarity=0.357  Sum_probs=341.0

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCC--------cccccc---ccccc----ccccccchhh-cccccccccc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGS--------HLSFRK---KRRLY----YPVAMSDLEL-EQDSTSALNV  152 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~--------~~~~~~---~~l~~----~~~~i~~~~~-~~~~~~~~~~  152 (535)
                      +|++|||+||+|+.+|+++...+.+|+|||++.        .+++..   .-+|.    ++..+..... ....+.....
T Consensus         6 yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g~~~~   85 (499)
T PTZ00052          6 YDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYGWKTS   85 (499)
T ss_pred             cCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCCCCCC
Confidence            689999999999999999999999999999732        133221   01221    1000000000 0000111111


Q ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEce----eEEEcceEEEeeCceecC-C-CCC-
Q psy14461        153 TIRNWNAATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSN----RSVTGFNFLLAVERRCLP-E-PRN-  225 (535)
Q Consensus       153 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~----~~~~~d~lViATGs~p~~-~-i~G-  225 (535)
                      ..++|.++.++++..++++...+...++..+|+++.|++.+.+.++|.+.+    ..++||+||||||++|.. + +|| 
T Consensus        86 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~a~~~~~~~v~v~~~~~~~~i~~d~lIIATGs~p~~p~~i~G~  165 (499)
T PTZ00052         86 SSFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYINGLAKLKDEHTVSYGDNSQEETITAKYILIATGGRPSIPEDVPGA  165 (499)
T ss_pred             CCcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEEEEEEccCCEEEEeeCCCceEEECCEEEEecCCCCCCCCCCCCc
Confidence            267999999999999999887788888889999999999999999998743    579999999999999987 4 898 


Q ss_pred             -CceechhhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEcCcCCccCcHHHHHHHHHhhhcCCeEE-cceEE
Q psy14461        226 -SALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVSI-QCCVI  303 (535)
Q Consensus       226 -~~v~~~~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v  303 (535)
                       ...+++++++.+...+++++|||||++|+|+|..|+++|.+||+++++.+++.+++++.+.+++.|+++||++ +++.+
T Consensus       166 ~~~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v  245 (499)
T PTZ00052        166 KEYSITSDDIFSLSKDPGKTLIVGASYIGLETAGFLNELGFDVTVAVRSIPLRGFDRQCSEKVVEYMKEQGTLFLEGVVP  245 (499)
T ss_pred             cceeecHHHHhhhhcCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCcccccCCHHHHHHHHHHHHHcCCEEEcCCeE
Confidence             4567889998888888999999999999999999999999999998866678899999999999999999999 99999


Q ss_pred             EEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCC
Q psy14461        304 EKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVH  383 (535)
Q Consensus       304 ~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~  383 (535)
                      ++++.. ++.+.+.+.   +|+  ++++|.|++++|++||++++.++.++++++++|++.+++. +|+.|+|||+|||+.
T Consensus       246 ~~v~~~-~~~~~v~~~---~g~--~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G~ii~~~~-~Ts~p~IyAiGDv~~  318 (499)
T PTZ00052        246 INIEKM-DDKIKVLFS---DGT--TELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPND-CTNIPNIFAVGDVVE  318 (499)
T ss_pred             EEEEEc-CCeEEEEEC---CCC--EEEcCEEEEeeCCCCCccccCchhcCcEECCCCCEeeCCC-cCCCCCEEEEEEecC
Confidence            999865 344556663   676  7899999999999999998877888999999998777777 999999999999983


Q ss_pred             CCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCC
Q psy14461        384 GKPNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLL  463 (535)
Q Consensus       384 ~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  463 (535)
                      +.+.+++.|.+||+++|.||++......++..+|+++|++|++|+||+||+||++.++...+.+...++....... ..+
T Consensus       319 ~~~~l~~~A~~~g~~aa~ni~g~~~~~~~~~~~p~~ift~p~ia~vGlte~~A~~~~~~~~~~~~~~~~~~~~~~~-~~~  397 (499)
T PTZ00052        319 GRPELTPVAIKAGILLARRLFKQSNEFIDYTFIPTTIFTPIEYGACGYSSEAAIAKYGEDDIEEYLQEFNTLEIAA-VHR  397 (499)
T ss_pred             CCcccHHHHHHHHHHHHHHHhCCCCCcCccccCCeEEecCCcceeecCCHHHHHHhcCCCCEEEEEeecccchhhc-ccc
Confidence            4678999999999999999998665567888899999999999999999999998854335777666665433221 111


Q ss_pred             CcchhhhhhccCCcccccc-cccCcceEEEEEEEC-CCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461        464 PENFVKLVCLKGGERVLGI-HVIGQNNFVKLVCLK-GGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT  535 (535)
Q Consensus       464 ~~~~~~~~~~~~~~~~~~~-~~~~~~g~~Kli~~~-~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~  535 (535)
                      .      .-  .+.....+ +...+.||+||++|+ +|++|||+|++|++|+|+|+.+++||++++|++||.++
T Consensus       398 ~------~~--~~~~~~~~~~~~~~~g~~Kli~~~~~~~~IlG~~ivg~~A~elI~~~~~ai~~~~t~~~l~~~  463 (499)
T PTZ00052        398 E------KH--ERARKDEYDFDVSSNCLAKLVCVKSEDNKVVGFHFVGPNAGEITQGFSLALKLGAKKSDFDSM  463 (499)
T ss_pred             c------cc--cccccccccccccCCceEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcc
Confidence            0      00  00000000 001268999999997 48999999999999999999999999999999999864

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=100.00  E-value=2.8e-58  Score=487.85  Aligned_cols=401  Identities=15%  Similarity=0.166  Sum_probs=338.5

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCc-cccccc----ccccccccccchhhcccccccccccccCHHHHHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSH-LSFRKK----RRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKL  163 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~-~~~~~~----~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~  163 (535)
                      ++|+|||+||+|+.+|+++...+.+|+|||+++. +++. |    .+|.... +..           .....+|.++..+
T Consensus         4 ~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~-c~~~gciP~k~~-~~~-----------~~~~~~~~~~~~~   70 (438)
T PRK07251          4 YDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGT-CINIGCIPTKTL-LVA-----------AEKNLSFEQVMAT   70 (438)
T ss_pred             cCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCccccee-eecCccccchHh-hhh-----------hhcCCCHHHHHHH
Confidence            6899999999999999999989999999999874 3322 2    1332210 000           0123588999888


Q ss_pred             HHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEce----eEEEcceEEEeeCceecC-CCCC----CceechhhH
Q psy14461        164 IKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSN----RSVTGFNFLLAVERRCLP-EPRN----SALISADDL  234 (535)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~----~~~~~d~lViATGs~p~~-~i~G----~~v~~~~~~  234 (535)
                      ++....++.......+...||+++.+++.+.++++|.+..    .++.||+||||||++|+. ++||    ..++++.++
T Consensus        71 ~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~v~~~~~~~~~~~d~vViATGs~~~~p~i~G~~~~~~v~~~~~~  150 (438)
T PRK07251         71 KNTVTSRLRGKNYAMLAGSGVDLYDAEAHFVSNKVIEVQAGDEKIELTAETIVINTGAVSNVLPIPGLADSKHVYDSTGI  150 (438)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEeeCCCcEEEEcCEEEEeCCCCCCCCCCCCcCCCCcEEchHHH
Confidence            8888888876667778889999999999999999888742    479999999999999998 8998    358889999


Q ss_pred             HhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCC
Q psy14461        235 FRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDG  312 (535)
Q Consensus       235 ~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~  312 (535)
                      +.+...+++|+|||+|++|+|+|..|++.|.+|+++++ +++++..++++.+.+.+.++++||++ .++++++++.+ ++
T Consensus       151 ~~~~~~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~-~~  229 (438)
T PRK07251        151 QSLETLPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPREEPSVAALAKQYMEEDGITFLLNAHTTEVKND-GD  229 (438)
T ss_pred             hcchhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCCCCHHHHHHHHHHHHHcCCEEEcCCEEEEEEec-CC
Confidence            88877899999999999999999999999999999999 99999889999999999999999999 99999999864 34


Q ss_pred             cEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCCCcHHHH
Q psy14461        313 MKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMA  392 (535)
Q Consensus       313 ~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~~~~~~A  392 (535)
                      .+.+..    +|+  ++++|.+++|+|++|+++.++++..++.++++|+|.||+++||+.|+|||+|||+ +.+++.+.|
T Consensus       230 ~v~v~~----~g~--~i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~i~vd~~~~t~~~~IyaiGD~~-~~~~~~~~a  302 (438)
T PRK07251        230 QVLVVT----EDE--TYRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVDDYCQTSVPGVFAVGDVN-GGPQFTYIS  302 (438)
T ss_pred             EEEEEE----CCe--EEEcCEEEEeeCCCCCcccCCchhcCcEECCCCcEEECCCcccCCCCEEEeeecC-CCcccHhHH
Confidence            444432    565  7999999999999999998777777888888999999999999999999999999 889999999


Q ss_pred             HHHHHHHHHHHhCCCC-CCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcchhhhh
Q psy14461        393 AISARLIIERLYGMQD-QLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLV  471 (535)
Q Consensus       393 ~~~g~~aa~~i~g~~~-~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  471 (535)
                      ..+|++++.++++... ....+..+|+++|++|++|+||+||+||++.+.  ++.+....+....++. .          
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~ia~vGlte~~a~~~g~--~~~~~~~~~~~~~~~~-~----------  369 (438)
T PRK07251        303 LDDFRIVFGYLTGDGSYTLEDRGNVPTTMFITPPLSQVGLTEKEAKEAGL--PYAVKELLVAAMPRAH-V----------  369 (438)
T ss_pred             HHHHHHHHHHHcCCCCccccccCCCCEEEECCCceEeeeCCHHHHHhcCC--CeEEEEEECCcchhhh-h----------
Confidence            9999999999997643 223566799999999999999999999998843  5776666665444432 1          


Q ss_pred             hccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461        472 CLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT  535 (535)
Q Consensus       472 ~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~  535 (535)
                                  .++++||+||++|++|++|||+|++|++|+|+|+.+++||++++|++||.++
T Consensus       370 ------------~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~  421 (438)
T PRK07251        370 ------------NNDLRGAFKVVVNTETKEILGATLFGEGSQEIINLITMAMDNKIPYTYFKKQ  421 (438)
T ss_pred             ------------cCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcc
Confidence                        1256899999999999999999999999999999999999999999999763

>PRK14727 putative mercuric reductase; Provisional

Probab=100.00  E-value=1.9e-58  Score=493.30  Aligned_cols=412  Identities=18%  Similarity=0.185  Sum_probs=337.5

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccccc--c-cccc----cccccchhhc--ccccccccccccCHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKK--R-RLYY----PVAMSDLELE--QDSTSALNVTIRNWNA  159 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~--~-l~~~----~~~i~~~~~~--~~~~~~~~~~~~~~~~  159 (535)
                      ++++|||+|++|+.+|.++...+.+|+|+|+++.+++...  + +|..    +..+......  +.+.. ...+.++|..
T Consensus        17 ~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~-~~~~~~~~~~   95 (479)
T PRK14727         17 LHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVE-AVAPSIDRGL   95 (479)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcc-cCCCccCHHH
Confidence            6889999999999999999999999999999855433210  1 1211    0000000000  11211 1234678999


Q ss_pred             HHHHHHHHHHHHHH-HHHHHHHhc-CcEEEEeEEEEecCCEEEEc--e---eEEEcceEEEeeCceecC-CCCC---Cce
Q psy14461        160 ATKLIKRFCIRAKN-DSMRELKAL-GIDIVRTAAAFTNPHTIKLS--N---RSVTGFNFLLAVERRCLP-EPRN---SAL  228 (535)
Q Consensus       160 l~~~~~~~~~~~~~-~~~~~~~~~-gV~~~~g~~~~~~~~~v~~~--~---~~~~~d~lViATGs~p~~-~i~G---~~v  228 (535)
                      +..+++..+.++.. .+...++.. +|+++.|++.+.+++++.+.  +   .++.||+||||||++|.. ++||   ..+
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~p~i~G~~~~~~  175 (479)
T PRK14727         96 LLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFKDGNTLVVRLHDGGERVLAADRCLIATGSTPTIPPIPGLMDTPY  175 (479)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEecCCEEEEEeCCCceEEEEeCEEEEecCCCCCCCCCCCcCccce
Confidence            99988888887754 356666655 99999999999999988774  2   469999999999999998 8999   346


Q ss_pred             echhhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEcCcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEE
Q psy14461        229 ISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVI  307 (535)
Q Consensus       229 ~~~~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~  307 (535)
                      ++..+.+.....|++++|||+|++|+|+|..|+++|.+||+++++.+++.+++++.+.+++.|++.||++ +++++++++
T Consensus       176 ~~~~~~l~~~~~~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l~~~d~~~~~~l~~~L~~~GV~i~~~~~V~~i~  255 (479)
T PRK14727        176 WTSTEALFSDELPASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLLFREDPLLGETLTACFEKEGIEVLNNTQASLVE  255 (479)
T ss_pred             ecchHHhccccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCCCcchHHHHHHHHHHHHhCCCEEEcCcEEEEEE
Confidence            7777777666678999999999999999999999999999998866778899999999999999999999 999999998


Q ss_pred             EeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCCC
Q psy14461        308 SSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPN  387 (535)
Q Consensus       308 ~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~~  387 (535)
                      .+ ++.+.+..   .++   ++++|.+++|+|++||+..+.++.++++++++|+|.||+++||+.|+|||+|||+ +.+.
T Consensus       256 ~~-~~~~~v~~---~~g---~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~Vd~~~~Ts~~~IyA~GD~~-~~~~  327 (479)
T PRK14727        256 HD-DNGFVLTT---GHG---ELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNPAMETSAPDIYAAGDCS-DLPQ  327 (479)
T ss_pred             Ee-CCEEEEEE---cCC---eEEeCEEEEccCCCCCccCCCchhhCceecCCCCEEECCCeecCCCCEEEeeecC-Ccch
Confidence            65 34455544   233   5899999999999999998767888999999999999999999999999999999 8889


Q ss_pred             cHHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcch
Q psy14461        388 NASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENF  467 (535)
Q Consensus       388 ~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  467 (535)
                      +.+.|..||++||.||++.. ..+++..+|+++|++|++|+||+||+||++.+.  ++.+...++....+++ +..    
T Consensus       328 ~~~~A~~~G~~aa~~i~g~~-~~~~~~~~p~~~~~~p~ia~vGlte~~a~~~g~--~~~~~~~~~~~~~~~~-~~~----  399 (479)
T PRK14727        328 FVYVAAAAGSRAGINMTGGN-ATLDLSAMPAVIFTDPQVATVGLSEAKAHLSGI--ETISRVLTMENVPRAL-ANF----  399 (479)
T ss_pred             hhhHHHHHHHHHHHHHcCCC-cccccccCCcEEEecCceeeeeCCHHHHHHcCC--ceEEEEEEcccCchhh-hcC----
Confidence            99999999999999999864 456777899999999999999999999998843  6766666666555543 221    


Q ss_pred             hhhhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461        468 VKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT  535 (535)
Q Consensus       468 ~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~  535 (535)
                                        .++||+||++|++|++|||+|++|++|.|+|+.+++||++++|++||.++
T Consensus       400 ------------------~~~g~~Kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~  449 (479)
T PRK14727        400 ------------------ETDGFIKLVAEEGTRKLIGAQILAHEGGELIQSAALAIHNRMTVEELADQ  449 (479)
T ss_pred             ------------------CCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcC
Confidence                              46899999999999999999999999999999999999999999999874

>PRK14694 putative mercuric reductase; Provisional

Probab=100.00  E-value=1.9e-58  Score=492.48  Aligned_cols=411  Identities=20%  Similarity=0.249  Sum_probs=335.0

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccc---cccccccc----cccchhhccc---ccccccccccCH
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRK---KRRLYYPV----AMSDLELEQD---STSALNVTIRNW  157 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~---~~l~~~~~----~i~~~~~~~~---~~~~~~~~~~~~  157 (535)
                      -++++|||+|++|+++|+++...+.+|+|||++. +++..   +-+|...+    .+.......+   +.. .....++|
T Consensus         6 ~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~-~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~-~~~~~~~~   83 (468)
T PRK14694          6 NLHIAVIGSGGSAMAAALKATERGARVTLIERGT-IGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLS-AQAPVVDR   83 (468)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccc-cccceecCCccccHHHHHHHHHHHHHhhccccCCcc-cCCCccCH
Confidence            4689999999999999999999999999999974 32210   00221100    0000000001   111 01346799


Q ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHhc-CcEEEEeEEEEecCCEEEEc--e---eEEEcceEEEeeCceecC-CCCC---C
Q psy14461        158 NAATKLIKRFCIRAKND-SMRELKAL-GIDIVRTAAAFTNPHTIKLS--N---RSVTGFNFLLAVERRCLP-EPRN---S  226 (535)
Q Consensus       158 ~~l~~~~~~~~~~~~~~-~~~~~~~~-gV~~~~g~~~~~~~~~v~~~--~---~~~~~d~lViATGs~p~~-~i~G---~  226 (535)
                      ..+.++.++.+..+... +...++.. +|+++.|++.+++.+.+.+.  +   .+++||+||||||++|+. ++||   .
T Consensus        84 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id~~~~~V~~~~g~~~~~~~d~lViATGs~p~~p~i~G~~~~  163 (468)
T PRK14694         84 SALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVDERTLTVTLNDGGEQTVHFDRAFIGTGARPAEPPVPGLAET  163 (468)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEecCCEEEEEecCCCeEEEECCEEEEeCCCCCCCCCCCCCCCC
Confidence            99999999888877653 55556554 99999999999887766663  2   479999999999999998 9999   3


Q ss_pred             ceechhhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEcCcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEE
Q psy14461        227 ALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEK  305 (535)
Q Consensus       227 ~v~~~~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~  305 (535)
                      .++++++.+.+...+++++|||+|++|+|+|..|+++|.+||+++++++++.+++++.+.+++.|+++||++ .++.+++
T Consensus       164 ~~~~~~~~~~l~~~~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l~~~~~~~~~~l~~~l~~~GI~v~~~~~v~~  243 (468)
T PRK14694        164 PYLTSTSALELDHIPERLLVIGASVVALELAQAFARLGSRVTVLARSRVLSQEDPAVGEAIEAAFRREGIEVLKQTQASE  243 (468)
T ss_pred             ceEcchhhhchhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCCCCCHHHHHHHHHHHHhCCCEEEeCCEEEE
Confidence            467778887777778999999999999999999999999999998877788899999999999999999999 9999999


Q ss_pred             EEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCC
Q psy14461        306 VISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGK  385 (535)
Q Consensus       306 i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~  385 (535)
                      ++.+ ++.+.+..    ++.  ++++|.|++|+|++||++++.++.++++. ++|+|.||++++|+.|+|||+|||+ +.
T Consensus       244 i~~~-~~~~~v~~----~~~--~i~~D~vi~a~G~~pn~~~l~l~~~g~~~-~~G~i~vd~~~~Ts~~~IyA~GD~~-~~  314 (468)
T PRK14694        244 VDYN-GREFILET----NAG--TLRAEQLLVATGRTPNTENLNLESIGVET-ERGAIRIDEHLQTTVSGIYAAGDCT-DQ  314 (468)
T ss_pred             EEEc-CCEEEEEE----CCC--EEEeCEEEEccCCCCCcCCCCchhcCccc-CCCeEeeCCCcccCCCCEEEEeecC-CC
Confidence            9865 34344443    333  69999999999999999987667778876 4799999999999999999999999 88


Q ss_pred             CCcHHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCc
Q psy14461        386 PNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPE  465 (535)
Q Consensus       386 ~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  465 (535)
                      +.+.+.|..||++||.||++.. ..+++..+|+++|++|++|+||+||+||++.+.  ++.+...++....+++ +..  
T Consensus       315 ~~~~~~A~~~G~~aa~~i~~~~-~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~--~~~~~~~~~~~~~~~~-~~~--  388 (468)
T PRK14694        315 PQFVYVAAAGGSRAAINMTGGD-ASLDLSAMPEVIFTDPQVATVGLSEAEAQAQGY--DTDSRTLDLENVPRAL-VNF--  388 (468)
T ss_pred             cccHHHHHHHHHHHHHHhcCCC-cccccCCCCeEEECCCCeEEeeCCHHHHHHcCC--ceEEEEEecccchhhh-hcC--
Confidence            9999999999999999999864 456778899999999999999999999998844  6777777776655544 222  


Q ss_pred             chhhhhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461        466 NFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT  535 (535)
Q Consensus       466 ~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~  535 (535)
                                          .+.||+||++|++|++|||+|++|++|+|+|+.+++||++++|++||.++
T Consensus       389 --------------------~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~  438 (468)
T PRK14694        389 --------------------DTGGFIKMVAERGSGRLLGVQVVAGEAGELIQTAVMALRARMTVNEIADE  438 (468)
T ss_pred             --------------------CCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcc
Confidence                                46899999999999999999999999999999999999999999999875

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=100.00  E-value=2.8e-58  Score=491.19  Aligned_cols=414  Identities=22%  Similarity=0.236  Sum_probs=340.0

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccccc---cccc----ccccccchhhccccccc-ccccccCHHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKK---RRLY----YPVAMSDLELEQDSTSA-LNVTIRNWNAA  160 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~---~l~~----~~~~i~~~~~~~~~~~~-~~~~~~~~~~l  160 (535)
                      ++++|||+|++|+.+|+++...+.+|+|||++ .+++...   -+|.    ..........+.+++.. .....++|.++
T Consensus         4 yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~   82 (460)
T PRK06292          4 YDVIVIGAGPAGYVAARRAAKLGKKVALIEKG-PLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHADGPKIDFKKV   82 (460)
T ss_pred             ccEEEECCCHHHHHHHHHHHHCCCeEEEEeCC-ccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcCCCccCHHHH
Confidence            68999999999999999999999999999994 3332210   0111    00000001111122211 11246799999


Q ss_pred             HHHHHHHHHHHHHHH-HHHHHhcCcEEEEeEEEEecCCEEEEceeEEEcceEEEeeCce-ecCCCCC------Cceechh
Q psy14461        161 TKLIKRFCIRAKNDS-MRELKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAVERR-CLPEPRN------SALISAD  232 (535)
Q Consensus       161 ~~~~~~~~~~~~~~~-~~~~~~~gV~~~~g~~~~~~~~~v~~~~~~~~~d~lViATGs~-p~~~i~G------~~v~~~~  232 (535)
                      .++.+.....+...+ ...++..+|+++.|++.+.+.+++.+++.++.||+||||||++ |  ++||      ..+++++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~v~v~~~~~~~d~lIiATGs~~p--~ipg~~~~~~~~~~~~~  160 (460)
T PRK06292         83 MARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFVDPNTVEVNGERIEAKNIVIATGSRVP--PIPGVWLILGDRLLTSD  160 (460)
T ss_pred             HHHHHHHHHHHhcchHHHHHhhCCCEEEEEEEEEccCCEEEECcEEEEeCEEEEeCCCCCC--CCCCCcccCCCcEECch
Confidence            999998888877666 5667778999999999999999998876789999999999999 5  4454      3577888


Q ss_pred             hHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeC
Q psy14461        233 DLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSF  310 (535)
Q Consensus       233 ~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~  310 (535)
                      +++.+...+++++|||+|++|+|+|..|+++|.+|+++++ +++++.+++++.+.+++.|+++ |++ +++++++++.++
T Consensus       161 ~~~~~~~~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~-I~i~~~~~v~~i~~~~  239 (460)
T PRK06292        161 DAFELDKLPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPLEDPEVSKQAQKILSKE-FKIKLGAKVTSVEKSG  239 (460)
T ss_pred             HHhCccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcchhHHHHHHHHHHHhhc-cEEEcCCEEEEEEEcC
Confidence            8888888899999999999999999999999999999999 9999999999999999999999 999 999999998652


Q ss_pred             CCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCCCcHH
Q psy14461        311 DGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNAS  390 (535)
Q Consensus       311 ~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~~~~~  390 (535)
                      +..+.++.   .+|+..++++|.+++++|++||++.+.++.++++++++|+|.||+++||+.|+|||+|||+ +.+++++
T Consensus       240 ~~~v~~~~---~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~g~i~vd~~~~ts~~~IyA~GD~~-~~~~~~~  315 (460)
T PRK06292        240 DEKVEELE---KGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDEHTQTSVPGIYAAGDVN-GKPPLLH  315 (460)
T ss_pred             CceEEEEE---cCCceEEEEeCEEEEccCCccCCCCCCcHhhCCEecCCCcEeECCCcccCCCCEEEEEecC-CCccchh
Confidence            22344433   2455457999999999999999998767888999999999999999999999999999999 8888999


Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcchhhh
Q psy14461        391 MAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKL  470 (535)
Q Consensus       391 ~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  470 (535)
                      .|.+||++||.||++......++..+|+++|++|++++||+||+||++.+.  ++.+...++....++. ..        
T Consensus       316 ~A~~qg~~aa~~i~~~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~g~--~~~~~~~~~~~~~~~~-~~--------  384 (460)
T PRK06292        316 EAADEGRIAAENAAGDVAGGVRYHPIPSVVFTDPQIASVGLTEEELKAAGI--DYVVGEVPFEAQGRAR-VM--------  384 (460)
T ss_pred             HHHHHHHHHHHHhcCCCCCCcCCCCCCeEEECCCccEEeECCHHHHHhcCC--CeEEEEEecccchHHH-hc--------
Confidence            999999999999998544456777899999999999999999999998743  6777777776655543 11        


Q ss_pred             hhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461        471 VCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT  535 (535)
Q Consensus       471 ~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~  535 (535)
                                    +.++||+||++|++|++|||+|++|++|.|+|+.+++||++++|++||.++
T Consensus       385 --------------~~~~g~~klv~d~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~  435 (460)
T PRK06292        385 --------------GKNDGFVKVYADKKTGRLLGAHIIGPDAEHLIHLLAWAMQQGLTVEDLLRM  435 (460)
T ss_pred             --------------CCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhC
Confidence                          257899999999999999999999999999999999999999999999864

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=100.00  E-value=5.3e-58  Score=489.65  Aligned_cols=417  Identities=16%  Similarity=0.185  Sum_probs=341.8

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEec------CCccccccc---ccccccc----cccchhhc---ccccccccc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQER------GSHLSFRKK---RRLYYPV----AMSDLELE---QDSTSALNV  152 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~------~~~~~~~~~---~l~~~~~----~i~~~~~~---~~~~~~~~~  152 (535)
                      ++++|||+|++|+.+|++....+.+|+|+|+      ...+++...   .+|...+    .+......   ..+.. ...
T Consensus         5 ~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~-~~~   83 (475)
T PRK06327          5 FDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIH-VDG   83 (475)
T ss_pred             eeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCcc-CCC
Confidence            6899999999999999999999999999998      122222110   1121000    00000000   01111 123


Q ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEec----CCEEEEce---eEEEcceEEEeeCceecC-C-C
Q psy14461        153 TIRNWNAATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTN----PHTIKLSN---RSVTGFNFLLAVERRCLP-E-P  223 (535)
Q Consensus       153 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~----~~~v~~~~---~~~~~d~lViATGs~p~~-~-i  223 (535)
                      ..+||.++.+++++.++.+...+...++..+|+++.|++.+.+    .++|.+.+   .+++||+||||||++|+. + +
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~v~v~~~~~~~~~~d~lViATGs~p~~~p~~  163 (475)
T PRK06327         84 VKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGRGSFVGKTDAGYEIKVTGEDETVITAKHVIIATGSEPRHLPGV  163 (475)
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCCCCCEEEEecCCCeEEEeCEEEEeCCCCCCCCCCC
Confidence            4679999999999999988888888889999999999999887    77888752   479999999999999975 4 3


Q ss_pred             CC--CceechhhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-c
Q psy14461        224 RN--SALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-Q  299 (535)
Q Consensus       224 ~G--~~v~~~~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~  299 (535)
                      +.  ..++++++++.+...|++|+|||+|++|+|+|..|+++|.+||++++ +.+++.+++++.+.+.+.|+++||++ +
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~gi~i~~  243 (475)
T PRK06327        164 PFDNKIILDNTGALNFTEVPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAAADEQVAKEAAKAFTKQGLDIHL  243 (475)
T ss_pred             CCCCceEECcHHHhcccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCcCCHHHHHHHHHHHHHcCcEEEe
Confidence            22  55788888888877899999999999999999999999999999999 99999899999999999999999999 9


Q ss_pred             ceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeC
Q psy14461        300 CCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVG  379 (535)
Q Consensus       300 ~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~G  379 (535)
                      +++|++++.+ ++.+.+++.+ .+|++.++++|.+++++|++|+++.+.++.++++++++|+|.||++++|+.|+|||+|
T Consensus       244 ~~~v~~i~~~-~~~v~v~~~~-~~g~~~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~Ts~~~VyA~G  321 (475)
T PRK06327        244 GVKIGEIKTG-GKGVSVAYTD-ADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFIPVDDHCRTNVPNVYAIG  321 (475)
T ss_pred             CcEEEEEEEc-CCEEEEEEEe-CCCceeEEEcCEEEEccCCccCCCCCCcHhhCceeCCCCeEeECCCCccCCCCEEEEE
Confidence            9999999875 3455666542 2355457999999999999999997766788999999999999999999999999999


Q ss_pred             CcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCccccc
Q psy14461        380 GIVHGKPNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLL  459 (535)
Q Consensus       380 D~~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~  459 (535)
                      ||+ +.+++++.|..||++||.||++.. ...++..+|+++|++|++++||+||+||++.+.  ++.+...++....++.
T Consensus       322 D~~-~~~~~~~~A~~~G~~aa~~i~g~~-~~~~~~~~p~~~~~~pe~a~vGlte~~a~~~g~--~~~~~~~~~~~~~~~~  397 (475)
T PRK06327        322 DVV-RGPMLAHKAEEEGVAVAERIAGQK-GHIDYNTIPWVIYTSPEIAWVGKTEQQLKAEGV--EYKAGKFPFMANGRAL  397 (475)
T ss_pred             ecc-CCcchHHHHHHHHHHHHHHHcCCC-CCCCCCCCCeEEeCCcceEEEeCCHHHHHHcCC--CEEEEEEcccccchhh
Confidence            999 788899999999999999999854 345778899999999999999999999998833  5666666665444432


Q ss_pred             CCCCCcchhhhhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461        460 DPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT  535 (535)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~  535 (535)
                       .                      .+.+.||+||++|++|++|||+|++|++|.|+|+.+++||++++|++||.++
T Consensus       398 -~----------------------~~~~~g~~klv~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~  450 (475)
T PRK06327        398 -A----------------------MGEPDGFVKIIADAKTDEILGVHVIGPNASELIAEAVVAMEFKASSEDIARI  450 (475)
T ss_pred             -h----------------------cCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcC
Confidence             1                      1256899999999999999999999999999999999999999999999864

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=100.00  E-value=1.2e-57  Score=487.08  Aligned_cols=417  Identities=21%  Similarity=0.262  Sum_probs=339.6

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccc---ccccccccc-ccch---hhcc--cccccccccccCHH
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRK---KRRLYYPVA-MSDL---ELEQ--DSTSALNVTIRNWN  158 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~---~~l~~~~~~-i~~~---~~~~--~~~~~~~~~~~~~~  158 (535)
                      .++++|||+||+|+.+|+++...+.+|+|||++. +++..   +.+|...+- .+..   ....  .+.. .....++|.
T Consensus         4 ~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~-~~~~~~~~~   81 (472)
T PRK05976          4 EYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKGK-LGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGIS-VSGPALDFA   81 (472)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCeEEEEEccC-CCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCcc-CCCCccCHH
Confidence            3689999999999999999999999999999963 33221   012211000 0000   0000  1111 113367999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCC-------EEEEce-----eEEEcceEEEeeCceecC-CCCC
Q psy14461        159 AATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPH-------TIKLSN-----RSVTGFNFLLAVERRCLP-EPRN  225 (535)
Q Consensus       159 ~l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~-------~v~~~~-----~~~~~d~lViATGs~p~~-~i~G  225 (535)
                      ++.++++..++.+...+...+++.||+++.|++.+++.+       ++++..     .++.||+||||||++|.. +...
T Consensus        82 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~~~p~~~  161 (472)
T PRK05976         82 KVQERKDGIVDRLTKGVAALLKKGKIDVFHGIGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPVELPGLP  161 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCCCCCCCCC
Confidence            999999999999888888888999999999999999888       777642     579999999999999975 3222


Q ss_pred             ---CceechhhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cc
Q psy14461        226 ---SALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QC  300 (535)
Q Consensus       226 ---~~v~~~~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~  300 (535)
                         ..++++++++.+...+++++|||||++|+|+|..|+++|.+||++++ +.+++.+++++.+.+.+.|+++||++ ++
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~~~~~~~~~l~~~l~~~gI~i~~~  241 (472)
T PRK05976        162 FDGEYVISSDEALSLETLPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPTEDAELSKEVARLLKKLGVRVVTG  241 (472)
T ss_pred             CCCceEEcchHhhCccccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCCcCCHHHHHHHHHHHHhcCCEEEeC
Confidence               45788999988888899999999999999999999999999999999 99999999999999999999999999 99


Q ss_pred             eEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCC
Q psy14461        301 CVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGG  380 (535)
Q Consensus       301 ~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD  380 (535)
                      +++++++...++.+.+...  .+|+++++++|.+++|+|++||++.++++..++..+ +|+|.||++++|+.|+|||+||
T Consensus       242 ~~v~~i~~~~~~~~~~~~~--~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~-~g~i~Vd~~l~ts~~~IyAiGD  318 (472)
T PRK05976        242 AKVLGLTLKKDGGVLIVAE--HNGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDVE-GGFIQIDDFCQTKERHIYAIGD  318 (472)
T ss_pred             cEEEEEEEecCCCEEEEEE--eCCceEEEEeCEEEEeeCCccCCCCCCchhcCceec-CCEEEECCCcccCCCCEEEeee
Confidence            9999997521233333222  266555799999999999999998776667777654 7899999999999999999999


Q ss_pred             cCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccC
Q psy14461        381 IVHGKPNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLD  460 (535)
Q Consensus       381 ~~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~  460 (535)
                      |+ +.+.+++.|.+||++||.||+|.....+++..+|+++|++|++++||+||+||++.+.  ++.+....+....++. 
T Consensus       319 ~~-~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~p~~a~vG~te~~a~~~g~--~~~~~~~~~~~~~~~~-  394 (472)
T PRK05976        319 VI-GEPQLAHVAMAEGEMAAEHIAGKKPRPFDYAAIPACCYTDPEVASVGLTEEEAKEAGY--DVKVGKFPFAANGKAL-  394 (472)
T ss_pred             cC-CCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCCCEEEECcCceEEEeCCHHHHHHcCC--CEEEEEEECCcchhhh-
Confidence            99 8888999999999999999998765567777899999999999999999999998843  6777666666555543 


Q ss_pred             CCCCcchhhhhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461        461 PLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT  535 (535)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~  535 (535)
                      .                      .+.++||+||++|++|++|||+|++|++|.|+|+.+++||++++|++||.++
T Consensus       395 ~----------------------~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~  447 (472)
T PRK05976        395 T----------------------YGESDGFVKVVADRDTHDILGVQAVGPHVTELISEFALALELGARLWEVAGT  447 (472)
T ss_pred             h----------------------cCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhC
Confidence            1                      1257899999999999999999999999999999999999999999999864

>PRK13748 putative mercuric reductase; Provisional

Probab=100.00  E-value=1.3e-57  Score=497.66  Aligned_cols=411  Identities=20%  Similarity=0.219  Sum_probs=337.0

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccc--cc-cccc----cccccchhh--cc-cccccccccccCHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRK--KR-RLYY----PVAMSDLEL--EQ-DSTSALNVTIRNWN  158 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~--~~-l~~~----~~~i~~~~~--~~-~~~~~~~~~~~~~~  158 (535)
                      ++++|||+||+|+.+|+++...+.+|+|||++ .+++..  .+ +|..    +..+.....  .+ ++.. ......+|.
T Consensus        99 ~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~  176 (561)
T PRK13748         99 LHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIA-ATVPTIDRS  176 (561)
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccccCccccHHHHHHHHHHHHHhcccccCCcc-CCCCccCHH
Confidence            78999999999999999999999999999997 343221  00 2211    000000000  01 1211 123457899


Q ss_pred             HHHHHHHHHHHHHHHH-HHHHHHhc-CcEEEEeEEEEecCCEEEEc---e--eEEEcceEEEeeCceecC-CCCC-C--c
Q psy14461        159 AATKLIKRFCIRAKND-SMRELKAL-GIDIVRTAAAFTNPHTIKLS---N--RSVTGFNFLLAVERRCLP-EPRN-S--A  227 (535)
Q Consensus       159 ~l~~~~~~~~~~~~~~-~~~~~~~~-gV~~~~g~~~~~~~~~v~~~---~--~~~~~d~lViATGs~p~~-~i~G-~--~  227 (535)
                      ++.+++++.+.++... +...++.. +|+++.|++.+.+++++.+.   +  .+++||+||||||++|.. ++|| +  .
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~i~g~~~~~  256 (561)
T PRK13748        177 RLLAQQQARVDELRHAKYEGILDGNPAITVLHGEARFKDDQTLIVRLNDGGERVVAFDRCLIATGASPAVPPIPGLKETP  256 (561)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHhccCCeEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCCCCCCccc
Confidence            9999988888877653 55666665 89999999999998887773   2  369999999999999988 8999 3  4


Q ss_pred             eechhhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEcCcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEE
Q psy14461        228 LISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKV  306 (535)
Q Consensus       228 v~~~~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i  306 (535)
                      +++..+.+.....+++++|||+|++|+|+|..|+++|.+||+++++.+++.+++++.+.+++.|++.||++ +++.++++
T Consensus       257 ~~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i  336 (561)
T PRK13748        257 YWTSTEALVSDTIPERLAVIGSSVVALELAQAFARLGSKVTILARSTLFFREDPAIGEAVTAAFRAEGIEVLEHTQASQV  336 (561)
T ss_pred             eEccHHHhhcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEcCCEEEEE
Confidence            67777777666778999999999999999999999999999999855677789999999999999999999 99999999


Q ss_pred             EEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCC
Q psy14461        307 ISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKP  386 (535)
Q Consensus       307 ~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~  386 (535)
                      +.+ ++.+.+..    ++.  ++++|.|++|+|++||+..+.++.++++++++|+|.||+++||+.|||||+|||+ +.+
T Consensus       337 ~~~-~~~~~v~~----~~~--~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~Ts~~~IyA~GD~~-~~~  408 (561)
T PRK13748        337 AHV-DGEFVLTT----GHG--ELRADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVIDQGMRTSVPHIYAAGDCT-DQP  408 (561)
T ss_pred             Eec-CCEEEEEe----cCC--eEEeCEEEEccCCCcCCCCcCchhcCceECCCCCEeECCCcccCCCCEEEeeecC-CCc
Confidence            865 34444544    233  5999999999999999998767888999999999999999999999999999999 888


Q ss_pred             CcHHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcc
Q psy14461        387 NNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPEN  466 (535)
Q Consensus       387 ~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  466 (535)
                      .+.+.|..||++||.||+|.. ..+++..+|+++|++|++|+||+||+||++.+.  ++.+...++....+++ +..   
T Consensus       409 ~~~~~A~~~g~~aa~~i~g~~-~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~--~~~~~~~~~~~~~~~~-~~~---  481 (561)
T PRK13748        409 QFVYVAAAAGTRAAINMTGGD-AALDLTAMPAVVFTDPQVATVGYSEAEAHHDGI--ETDSRTLTLDNVPRAL-ANF---  481 (561)
T ss_pred             cchhHHHHHHHHHHHHHcCCC-cccCCCCCCeEEEccCCceeeeCCHHHHHHcCC--CeEEEEEecccCchhh-hcC---
Confidence            999999999999999999864 456777899999999999999999999998843  5777776666555543 221   


Q ss_pred             hhhhhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461        467 FVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT  535 (535)
Q Consensus       467 ~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~  535 (535)
                                         .+.||+||++|++|++|||+|++|++|.|+|+.++++|++++|++||.++
T Consensus       482 -------------------~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~  531 (561)
T PRK13748        482 -------------------DTRGFIKLVIEEGSGRLIGVQAVAPEAGELIQTAALAIRNRMTVQELADQ  531 (561)
T ss_pred             -------------------CCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcc
Confidence                               46899999999999999999999999999999999999999999999864

>KOG4716|consensus

Probab=100.00  E-value=4.1e-58  Score=437.32  Aligned_cols=425  Identities=27%  Similarity=0.382  Sum_probs=373.8

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCC-c--------------ccccccccccccccccchhh--ccccccccc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGS-H--------------LSFRKKRRLYYPVAMSDLEL--EQDSTSALN  151 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~-~--------------~~~~~~~l~~~~~~i~~~~~--~~~~~~~~~  151 (535)
                      ++++|||+|.+|++||-.+...+.+|.++|--. .              +++.+..+.+.+.-++....  +..|+..-.
T Consensus        20 yDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da~kyGW~~~e   99 (503)
T KOG4716|consen   20 YDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDARKYGWNVDE   99 (503)
T ss_pred             ccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCccccCceeeecccccHHHHHHHHHHHHHHHHHHhhCCCCcc
Confidence            788999999999999999999999999998532 1              11122223322211221111  112333222


Q ss_pred             -ccccCHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEce-----eEEEcceEEEeeCceecC-CCC
Q psy14461        152 -VTIRNWNAATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSN-----RSVTGFNFLLAVERRCLP-EPR  224 (535)
Q Consensus       152 -~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~-----~~~~~d~lViATGs~p~~-~i~  224 (535)
                       ..+.||..+.+..++.+..+++.++-.+++..|+++...++|++++++...+     +.++++++|||||.+|+. +||
T Consensus       100 ~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h~I~at~~~gk~~~~ta~~fvIatG~RPrYp~Ip  179 (503)
T KOG4716|consen  100 QKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPHKIKATNKKGKERFLTAENFVIATGLRPRYPDIP  179 (503)
T ss_pred             ccccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeecccceEEEecCCCceEEeecceEEEEecCCCCCCCCC
Confidence             5788999999999999999999988889999999999999999999988754     578999999999999999 999


Q ss_pred             C--CceechhhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEcCcCCccCcHHHHHHHHHhhhcCCeEE-cce
Q psy14461        225 N--SALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVSI-QCC  301 (535)
Q Consensus       225 G--~~v~~~~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~  301 (535)
                      |  +..+|++|++.+...|.+.+|||+|++|+|||.+|+-.|.+||+..|+-+++.||+++.+.+.+.|+++||+| ..+
T Consensus       180 G~~Ey~ITSDDlFsl~~~PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~LrGFDqdmae~v~~~m~~~Gikf~~~~  259 (503)
T KOG4716|consen  180 GAKEYGITSDDLFSLPYEPGKTLVVGAGYVALECAGFLKGFGYDVTVMVRSILLRGFDQDMAELVAEHMEERGIKFLRKT  259 (503)
T ss_pred             CceeeeecccccccccCCCCceEEEccceeeeehhhhHhhcCCCcEEEEEEeecccccHHHHHHHHHHHHHhCCceeecc
Confidence            9  8889999999999999999999999999999999999999999999988899999999999999999999999 888


Q ss_pred             EEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecC-CCceEcCCCCCcCCCCEEEeCC
Q psy14461        302 VIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKK-KSYVVCNEKDQTSVGNIFAVGG  380 (535)
Q Consensus       302 ~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~-~G~i~vd~~~~T~~~~IyA~GD  380 (535)
                      .+.+++..++++..|....+..+++-+-++|.|+||+|+.++++.++|+.+|+++++ .|.|.+|+.-+|++|+|||+||
T Consensus       260 vp~~Veq~~~g~l~v~~k~t~t~~~~~~~ydTVl~AiGR~~~~~~l~L~~~GVk~n~ks~KI~v~~~e~t~vp~vyAvGD  339 (503)
T KOG4716|consen  260 VPERVEQIDDGKLRVFYKNTNTGEEGEEEYDTVLWAIGRKALTDDLNLDNAGVKTNEKSGKIPVDDEEATNVPYVYAVGD  339 (503)
T ss_pred             cceeeeeccCCcEEEEeecccccccccchhhhhhhhhccccchhhcCCCccceeecccCCccccChHHhcCCCceEEecc
Confidence            889998876777788777666676667789999999999999999999999999976 6899999999999999999999


Q ss_pred             cCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccC
Q psy14461        381 IVHGKPNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLD  460 (535)
Q Consensus       381 ~~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~  460 (535)
                      +..+.|.+.+.|++.||..|+.+++......+|..+|.++||..|++++||||++|.+.+|.++++++...|.++.+.. 
T Consensus       340 Il~~kpELTPvAIqsGrlLa~Rlf~gs~q~~dy~~V~TTVFTPLEy~c~GlsEE~Ai~k~g~dnievfH~~f~P~E~~i-  418 (503)
T KOG4716|consen  340 ILEDKPELTPVAIQSGRLLARRLFAGSTQLMDYDDVATTVFTPLEYGCVGLSEEDAIEKYGEDNIEVFHSYFKPLEYTI-  418 (503)
T ss_pred             eecCCcccchhhhhhchHHHHHHhcCcceeeeccCCceeeecchhccccCCCHHHHHHHhCcccEEEeeccccceEEEc-
Confidence            9988899999999999999999999888899999999999999999999999999999999999999999999999987 


Q ss_pred             CCCCcchhhhhhccCCcccccccccCcceEEEEEEEC-CCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461        461 PLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLK-GGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT  535 (535)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~-~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~  535 (535)
                      |+++                     ....|+|+|+++ ++.+|+|.|++||+|.|+|+.++.|++.++|..+|.++
T Consensus       419 pqrd---------------------~~~CY~K~vc~r~~~qkv~G~H~lgPnAgEV~QGfaaAlk~glt~~~l~nt  473 (503)
T KOG4716|consen  419 PQRD---------------------VRHCYLKAVCERDEDQKVLGLHILGPNAGEVIQGFAAALKCGLTKKDLDNT  473 (503)
T ss_pred             cccc---------------------CCceEEEEeecccCCceEEEEEEecCchhHHHHHHHHHHHhcccHHHHhhc
Confidence            7765                     467899999988 56799999999999999999999999999999999875

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=100.00  E-value=1.2e-55  Score=471.29  Aligned_cols=416  Identities=22%  Similarity=0.287  Sum_probs=344.7

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccccc---ccccccc----cccchhhccccccc-ccccccCHHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKK---RRLYYPV----AMSDLELEQDSTSA-LNVTIRNWNAA  160 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~---~l~~~~~----~i~~~~~~~~~~~~-~~~~~~~~~~l  160 (535)
                      ++|+|||+|++|+.+|.++...+.+|+|||+ +.+++...   .+|...+    .+-........+.. .....++|..+
T Consensus         2 yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   80 (461)
T TIGR01350         2 YDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVENVSVDWEKM   80 (461)
T ss_pred             ccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCCCCcCCHHHH
Confidence            5789999999999999999999999999999 54443211   1121100    00000000111111 12346789999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEce----eEEEcceEEEeeCceecC-CCC-C---Cceech
Q psy14461        161 TKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSN----RSVTGFNFLLAVERRCLP-EPR-N---SALISA  231 (535)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~----~~~~~d~lViATGs~p~~-~i~-G---~~v~~~  231 (535)
                      ..+.+...+++...+...++..||+++.|++.+.+++++.+..    .++.||+||||||++|+. ++| +   ..++++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~d~lVlAtG~~p~~~~~~~~~~~~~~~~~  160 (461)
T TIGR01350        81 QKRKNKVVKKLVGGVKGLLKKNKVTVIKGEAKFLDPGTVLVTGENGEETLTAKNIIIATGSRPRSLPGPFDFDGEVVITS  160 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCcEEEEeCEEEEcCCCCCCCCCCCCCCCCceEEcc
Confidence            9999989888888888889999999999999999988887753    479999999999999988 776 4   458899


Q ss_pred             hhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEe
Q psy14461        232 DDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISS  309 (535)
Q Consensus       232 ~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~  309 (535)
                      ++.+.+...+++++|||||++|+|+|..|++.|.+||++++ +.+++.+++++.+.+.+.+++.||++ .++++++++.+
T Consensus       161 ~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~  240 (461)
T TIGR01350       161 TGALNLKEVPESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILPGEDAEVSKVVAKALKKKGVKILTNTKVTAVEKN  240 (461)
T ss_pred             hHHhccccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEe
Confidence            99988888899999999999999999999999999999999 99999999999999999999999999 99999999875


Q ss_pred             CCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCCCcH
Q psy14461        310 FDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNA  389 (535)
Q Consensus       310 ~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~~~~  389 (535)
                       ++.+.+++.   +|++.++++|.+++|+|++||+..+.++..+++++++|+|.||+++||+.|+|||+|||+ +.+.++
T Consensus       241 -~~~v~v~~~---~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~IyaiGD~~-~~~~~~  315 (461)
T TIGR01350       241 -DDQVVYENK---GGETETLTGEKVLVAVGRKPNTEGLGLENLGVELDERGRIVVDEYMRTNVPGIYAIGDVI-GGPMLA  315 (461)
T ss_pred             -CCEEEEEEe---CCcEEEEEeCEEEEecCCcccCCCCCcHhhCceECCCCcEeeCCCcccCCCCEEEeeecC-CCcccH
Confidence             455555553   564347999999999999999985545888999999999999999999999999999999 788899


Q ss_pred             HHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcchhh
Q psy14461        390 SMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVK  469 (535)
Q Consensus       390 ~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (535)
                      +.|.+||+.||+||.+.....+++..+|.++|++|+++++|+++++|++.+.  ++.+...++....++. .        
T Consensus       316 ~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~a~vG~~~~~a~~~g~--~~~~~~~~~~~~~~~~-~--------  384 (461)
T TIGR01350       316 HVASHEGIVAAENIAGKEPAPIDYDAVPSCIYTDPEVASVGLTEEQAKEAGY--DVKIGKFPFAANGKAL-A--------  384 (461)
T ss_pred             HHHHHHHHHHHHHHcCCCCCCCCCCCCCeEEecCCceEEEeCCHHHHHhCCC--CeEEEEEeCccchHHH-h--------
Confidence            9999999999999998654356677899999999999999999999999843  5777666665444432 1        


Q ss_pred             hhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461        470 LVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT  535 (535)
Q Consensus       470 ~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~  535 (535)
                                    .+.+.||+||++|+++++|||+|++|++|.|+|+.+++||++++|++||.++
T Consensus       385 --------------~~~~~g~~kl~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~  436 (461)
T TIGR01350       385 --------------LGETDGFVKIIADKKTGEILGAHIIGPHATELISEAVLAMELELTVEELAKT  436 (461)
T ss_pred             --------------cCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcC
Confidence                          1257899999999999999999999999999999999999999999999864

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=100.00  E-value=3.8e-55  Score=463.01  Aligned_cols=380  Identities=16%  Similarity=0.178  Sum_probs=301.6

Q ss_pred             EEEEeeCCccHHHHHHHHHh--hCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQ--TNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKR  166 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~--~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  166 (535)
                      .+|+|||+|++|+.+|....  ..+.+|+|||+++++.|.++++|++   +.+..             .++..+..    
T Consensus         2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~~lp~~---~~~~~-------------~~~~~~~~----   61 (438)
T PRK13512          2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYY---IGEVV-------------EDRKYALA----   61 (438)
T ss_pred             CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccCCcchh---hcCcc-------------CCHHHccc----
Confidence            36899999999999986553  4478999999999999999999887   33210             01111111    


Q ss_pred             HHHHHHHHHHHHHHhcCcEEEE-eEEEEec--CCEEEEce------eEEEcceEEEeeCceecC-CCCCCceech---hh
Q psy14461        167 FCIRAKNDSMRELKALGIDIVR-TAAAFTN--PHTIKLSN------RSVTGFNFLLAVERRCLP-EPRNSALISA---DD  233 (535)
Q Consensus       167 ~~~~~~~~~~~~~~~~gV~~~~-g~~~~~~--~~~v~~~~------~~~~~d~lViATGs~p~~-~i~G~~v~~~---~~  233 (535)
                            .....+.++.||+++. .++..++  .++|.+.+      .++.||+||||||++|+. +++++.+++.   .+
T Consensus        62 ------~~~~~~~~~~~i~v~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~~~~~~~~~~~~~~~~~~  135 (438)
T PRK13512         62 ------YTPEKFYDRKQITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANSLGFESDITFTLRNLED  135 (438)
T ss_pred             ------CCHHHHHHhCCCEEEeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCCCCCCCCCCCeEEecCHHH
Confidence                  0112334567999876 4555544  56777643      247999999999999987 6665444443   23


Q ss_pred             HHhc-----cCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEE
Q psy14461        234 LFRL-----GAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKV  306 (535)
Q Consensus       234 ~~~~-----~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i  306 (535)
                      ...+     ...+++++|||||++|+|+|..|+++|.+||++++ +++++.+++++.+.+.+.|++.||++ ++.+++++
T Consensus       136 ~~~l~~~l~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i  215 (438)
T PRK13512        136 TDAIDQFIKANQVDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRLNEEIDAI  215 (438)
T ss_pred             HHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchhcCHHHHHHHHHHHHhcCCEEEECCeEEEE
Confidence            2221     23578999999999999999999999999999999 88899999999999999999999999 99999999


Q ss_pred             EEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCC--
Q psy14461        307 ISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHG--  384 (535)
Q Consensus       307 ~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~--  384 (535)
                      +.   .  .+++.   +|+  ++++|.|++|+|++||++++  +..+++++++|+|.||+++||+.|+|||+|||+ +  
T Consensus       216 ~~---~--~v~~~---~g~--~~~~D~vl~a~G~~pn~~~l--~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~~-~~~  282 (438)
T PRK13512        216 NG---N--EVTFK---SGK--VEHYDMIIEGVGTHPNSKFI--ESSNIKLDDKGFIPVNDKFETNVPNIYAIGDII-TSH  282 (438)
T ss_pred             eC---C--EEEEC---CCC--EEEeCEEEECcCCCcChHHH--HhcCcccCCCCcEEECCCcccCCCCEEEeeeeE-Eee
Confidence            63   2  35553   566  79999999999999999886  778898888899999999999999999999998 4  


Q ss_pred             --------CCCcHHHHHHHHHHHHHHHhCCCCC-CCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCc
Q psy14461        385 --------KPNNASMAAISARLIIERLYGMQDQ-LMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTF  455 (535)
Q Consensus       385 --------~~~~~~~A~~~g~~aa~~i~g~~~~-~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~  455 (535)
                              .+++++.|.+||+++|+||+|.+.. ..++..+|++.|++|++++||+||+||++.    ++.+....+...
T Consensus       283 ~~~~~~~~~~~la~~A~~~a~~~a~ni~g~~~~~~~~~~~~~~~~~~~~~ia~vGlte~~a~~~----~~~~~~~~~~~~  358 (438)
T PRK13512        283 YRHVDLPASVPLAWGAHRAASIVAEQIAGNDTIEFKGFLGNNIVKFFDYTFASVGVKPNELKQF----DYKMVEVTQGAH  358 (438)
T ss_pred             eccCCCceecccchHHHHHHHHHHHHhcCCCccccCCcccceEEEEcCceEEeecCCHHHHccC----CcEEEEEecCCc
Confidence                    2467888999999999999985432 226677999999999999999999999975    466555444322


Q ss_pred             ccccCCCCCcchhhhhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCc-hhHHHHHHHHHHHCCCCHHHHcC
Q psy14461        456 DNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQN-VAGMIFGYSLALRKFLTKAELDG  534 (535)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~-a~e~i~~~~~~i~~~~t~~~l~~  534 (535)
                      .... +                       +++.||+||++|++|++|||+|++|++ |.|+|+.++++|++++|++||.+
T Consensus       359 ~~~~-~-----------------------~~~~g~~klv~d~~~~~ilGa~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~  414 (438)
T PRK13512        359 ANYY-P-----------------------GNSPLHLRVYYDTSNRKILRAAAVGKEGADKRIDVLSMAMMNQLTVDELTE  414 (438)
T ss_pred             CCCc-C-----------------------CCceEEEEEEEECCCCeEEEEEEEccccHHHHHHHHHHHHHcCCcHHHHhh
Confidence            2211 1                       257899999999999999999999997 89999999999999999999976


Q ss_pred             C
Q psy14461        535 T  535 (535)
Q Consensus       535 ~  535 (535)
                      +
T Consensus       415 ~  415 (438)
T PRK13512        415 F  415 (438)
T ss_pred             c
Confidence            3

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=100.00  E-value=3.3e-52  Score=442.69  Aligned_cols=384  Identities=20%  Similarity=0.219  Sum_probs=296.7

Q ss_pred             EEEeeCCccHHHHHHHHHhh--CCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHH
Q psy14461         90 YLDRIGDEGILLEEELKRQT--NQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRF  167 (535)
Q Consensus        90 ~v~iiG~G~aG~~~al~~~~--~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  167 (535)
                      +|+|||+|++|+.+|.....  ...+|+|||+++++.|.+++++++   +.+.             .....++..     
T Consensus         2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~---~~~~-------------~~~~~~~~~-----   60 (444)
T PRK09564          2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYF---VGGF-------------FDDPNTMIA-----   60 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceE---eccc-------------cCCHHHhhc-----
Confidence            68999999999999975543  356899999999988888888776   2221             001111111     


Q ss_pred             HHHHHHHHHHHHHhcCcEEEEe-EEEEe--cCCEEEEce----eEEE--cceEEEeeCceecC-CCCC---Cceech---
Q psy14461        168 CIRAKNDSMRELKALGIDIVRT-AAAFT--NPHTIKLSN----RSVT--GFNFLLAVERRCLP-EPRN---SALISA---  231 (535)
Q Consensus       168 ~~~~~~~~~~~~~~~gV~~~~g-~~~~~--~~~~v~~~~----~~~~--~d~lViATGs~p~~-~i~G---~~v~~~---  231 (535)
                            ...+.+++.||+++.+ .+..+  +.+++.+.+    ..+.  ||+||||||++|.. ++||   +++++.   
T Consensus        61 ------~~~~~~~~~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~~~~i~g~~~~~v~~~~~~  134 (444)
T PRK09564         61 ------RTPEEFIKSGIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARPIIPPIKNINLENVYTLKSM  134 (444)
T ss_pred             ------CCHHHHHHCCCeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCCCCCCCCCCcCCCCEEEECCH
Confidence                  1124466789998765 45544  456777743    3455  99999999999988 8888   445533   


Q ss_pred             hhHHhcc-----CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCc-cCcHHHHHHHHHhhhcCCeEE-cceEE
Q psy14461        232 DDLFRLG-----AWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLK-HFDQEMVRILLSSLTKAGVSI-QCCVI  303 (535)
Q Consensus       232 ~~~~~~~-----~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~-~~~~~~~~~~~~~l~~~gV~i-~~~~v  303 (535)
                      .+...+.     ..+++++|||+|++|+|+|..|++.|.+|+++++ +++++ .+++++.+.+.+.+++.||++ .++++
T Consensus       135 ~~~~~l~~~l~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~l~~~l~~~gI~v~~~~~v  214 (444)
T PRK09564        135 EDGLALKELLKDEEIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELHLNEFV  214 (444)
T ss_pred             HHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCchhcCHHHHHHHHHHHHHCCCEEEcCCEE
Confidence            3333332     2478999999999999999999999999999999 88886 589999999999999999999 99999


Q ss_pred             EEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCC
Q psy14461        304 EKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVH  383 (535)
Q Consensus       304 ~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~  383 (535)
                      ++++.+ ++...+..    ++.  ++++|.+++|+|++||++++  +.+|++++++|+|.||++++|+.|||||+|||+.
T Consensus       215 ~~i~~~-~~~~~v~~----~~~--~i~~d~vi~a~G~~p~~~~l--~~~gl~~~~~g~i~vd~~~~t~~~~IyA~GD~~~  285 (444)
T PRK09564        215 KSLIGE-DKVEGVVT----DKG--EYEADVVIVATGVKPNTEFL--EDTGLKTLKNGAIIVDEYGETSIENIYAAGDCAT  285 (444)
T ss_pred             EEEecC-CcEEEEEe----CCC--EEEcCEEEECcCCCcCHHHH--HhcCccccCCCCEEECCCcccCCCCEEEeeeEEE
Confidence            999753 22223333    444  69999999999999999876  7888988888999999999999999999999983


Q ss_pred             C---------CCCcHHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCC
Q psy14461        384 G---------KPNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPT  454 (535)
Q Consensus       384 ~---------~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~  454 (535)
                      .         .+++++.|.+||+++|+||+|.+.........+...|++|++++||+||+||++.+.  ++.+.......
T Consensus       286 ~~~~~~~~~~~~~~~~~A~~qg~~~a~ni~g~~~~~~~~~~~~~~~~~~~~~a~vG~t~~~a~~~g~--~~~~~~~~~~~  363 (444)
T PRK09564        286 IYNIVSNKNVYVPLATTANKLGRMVGENLAGRHVSFKGTLGSACIKVLDLEAARTGLTEEEAKKLGI--DYKTVFIKDKN  363 (444)
T ss_pred             EEeccCCCeeeccchHHHHHHHHHHHHHhcCCCCCCCCcccceEEEECCEEEEEecCCHHHHHHCCC--CeEEEEEecCC
Confidence            0         146788999999999999998654332222234566999999999999999998843  56555444321


Q ss_pred             cccccCCCCCcchhhhhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCc-hhHHHHHHHHHHHCCCCHHHHc
Q psy14461        455 FDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQN-VAGMIFGYSLALRKFLTKAELD  533 (535)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~-a~e~i~~~~~~i~~~~t~~~l~  533 (535)
                       .+.+ .                      .+.+.||+||++|++|++|||+|++|++ +.++|+.++++|++++|++||.
T Consensus       364 -~~~~-~----------------------~~~~~~~~klv~~~~~~~ilG~~~~g~~~~~~~i~~~~~~i~~~~~~~~~~  419 (444)
T PRK09564        364 -HTNY-Y----------------------PGQEDLYVKLIYEADTKVILGGQIIGKKGAVLRIDALAVAIYAKLTTQELG  419 (444)
T ss_pred             -CCCc-C----------------------CCCceEEEEEEEECCCCeEEeEEEEcCccHHHHHHHHHHHHHCCCCHHHHh
Confidence             1111 0                      1257899999999999999999999996 8999999999999999999997


Q ss_pred             CC
Q psy14461        534 GT  535 (535)
Q Consensus       534 ~~  535 (535)
                      ++
T Consensus       420 ~~  421 (444)
T PRK09564        420 MM  421 (444)
T ss_pred             hc
Confidence            53

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=100.00  E-value=8.8e-49  Score=414.18  Aligned_cols=369  Identities=20%  Similarity=0.171  Sum_probs=287.8

Q ss_pred             HHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccC-HHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14461        104 ELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRN-WNAATKLIKRFCIRAKNDSMRELKAL  182 (535)
Q Consensus       104 al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~  182 (535)
                      .|++.....+|||||+++.+.|.+++++.+   ..+.              .. ...+..          .....+++..
T Consensus         5 ~l~~~~~~~~Vtlid~~~~~~~~~~~l~~~---~~g~--------------~~~~~~~~~----------~~~~~~~~~~   57 (427)
T TIGR03385         5 RVRRLDKESDIIVFEKTEDVSFANCGLPYV---IGGV--------------IDDRNKLLA----------YTPEVFIKKR   57 (427)
T ss_pred             HHHhhCCCCcEEEEEcCCceeEEcCCCCeE---eccc--------------cCCHHHccc----------CCHHHHHHhc
Confidence            355555678999999999988888888776   2221              01 111111          1112344678


Q ss_pred             CcEEEEe-EEEEec--CCEEEEce----eEEE--cceEEEeeCceecC-CCCC---CceechhhHH---hc-----cCCC
Q psy14461        183 GIDIVRT-AAAFTN--PHTIKLSN----RSVT--GFNFLLAVERRCLP-EPRN---SALISADDLF---RL-----GAWP  241 (535)
Q Consensus       183 gV~~~~g-~~~~~~--~~~v~~~~----~~~~--~d~lViATGs~p~~-~i~G---~~v~~~~~~~---~~-----~~~~  241 (535)
                      |++++.+ ++..++  .+++.+.+    .++.  ||+||||||++|.. ++||   +.+++..++.   .+     ...+
T Consensus        58 gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lIiATG~~p~~~~i~G~~~~~v~~~~~~~~~~~~~~~l~~~~~  137 (427)
T TIGR03385        58 GIDVKTNHEVIEVNDERQTVVVRNNKTNETYEESYDYLILSPGASPIVPNIEGINLDIVFTLRNLEDTDAIKQYIDKNKV  137 (427)
T ss_pred             CCeEEecCEEEEEECCCCEEEEEECCCCCEEecCCCEEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHHHHhhcCC
Confidence            9998754 555443  56676642    3577  99999999999998 8998   4455433322   21     1346


Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcC-CccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEE
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRL-LKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRG  318 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~-l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~  318 (535)
                      ++|+|||||++|+|+|..|++.|.+|+++++ +.+ .+.+++++.+.+.+.|++.||++ .+..+++++.+  +.+ +.+
T Consensus       138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~--~~~-v~~  214 (427)
T TIGR03385       138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIEGE--ERV-KVF  214 (427)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCEEEEEecC--CCE-EEE
Confidence            8999999999999999999999999999999 777 46788999999999999999999 99999999764  333 344


Q ss_pred             ecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCC---------CCCcH
Q psy14461        319 FHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHG---------KPNNA  389 (535)
Q Consensus       319 ~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~---------~~~~~  389 (535)
                      .   +|+  ++++|.+++|+|++|+++++  +.++++++++|+|.||++++|+.|+|||+|||+..         .++++
T Consensus       215 ~---~g~--~i~~D~vi~a~G~~p~~~~l--~~~gl~~~~~G~i~vd~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~  287 (427)
T TIGR03385       215 T---SGG--VYQADMVILATGIKPNSELA--KDSGLKLGETGAIWVNEKFQTSVPNIYAAGDVAESHNIITKKPAWVPLA  287 (427)
T ss_pred             c---CCC--EEEeCEEEECCCccCCHHHH--HhcCcccCCCCCEEECCCcEeCCCCEEEeeeeEEeeeccCCCceeeech
Confidence            2   676  79999999999999999876  77889988899999999999999999999999830         13578


Q ss_pred             HHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcchhh
Q psy14461        390 SMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVK  469 (535)
Q Consensus       390 ~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (535)
                      +.|.+||++||+||+|.......+..+|+++|++|++++||+||+||++.+.  ++.+....+....+.+ +        
T Consensus       288 ~~A~~~g~~~a~ni~g~~~~~~~~~~~~~~~~~~~~~a~vG~t~~~a~~~g~--~~~~~~~~~~~~~~~~-~--------  356 (427)
T TIGR03385       288 WGANKMGRIAGENIAGNDIEFKGVLGTNITKFFDLTIASTGVTENEAKKLNI--DYKTVFVKAKTHANYY-P--------  356 (427)
T ss_pred             HHHHHHHHHHHHHhcCCCCCCCCcceeeEEEEcCeEEEEecCCHHHHHHCCC--CeEEEEEecCCCCCcC-C--------
Confidence            8999999999999998654333444678999999999999999999998733  5666554443322221 1        


Q ss_pred             hhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCc-hhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461        470 LVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQN-VAGMIFGYSLALRKFLTKAELDGT  535 (535)
Q Consensus       470 ~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~-a~e~i~~~~~~i~~~~t~~~l~~~  535 (535)
                                     +.+.||+||++|++|++|||+|++|++ |.|+|+.++++|++++|++||.++
T Consensus       357 ---------------~~~~g~~kli~~~~~~~ilG~~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~  408 (427)
T TIGR03385       357 ---------------GNSPLHLKLIYEKDTRRILGAQAVGKEGADKRIDVLAAAIMAGLTVKDLFFF  408 (427)
T ss_pred             ---------------CCceEEEEEEEECCCCeEEEEEEEccccHHHHHHHHHHHHHCCCCHHHHhhc
Confidence                           256899999999999999999999998 999999999999999999999764

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=100.00  E-value=1.7e-42  Score=388.08  Aligned_cols=368  Identities=16%  Similarity=0.135  Sum_probs=283.1

Q ss_pred             EEEeeCCccHHHHHHHHHhh----CCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHH
Q psy14461         90 YLDRIGDEGILLEEELKRQT----NQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIK  165 (535)
Q Consensus        90 ~v~iiG~G~aG~~~al~~~~----~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~  165 (535)
                      +|+|||+|++|+.++.....    .+.+||||+++++++|.++.++.+   +++.               .+.+      
T Consensus         5 kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~---~~~~---------------~~~~------   60 (847)
T PRK14989          5 RLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSY---FSHH---------------TAEE------   60 (847)
T ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHh---HcCC---------------CHHH------
Confidence            68999999999998865432    357999999999999998888766   3321               1222      


Q ss_pred             HHHHHHHHHHHHHHHhcCcEEEEeE-EEEecC--CEEEEce-eEEEcceEEEeeCceecC-CCCC---Ccee---chhhH
Q psy14461        166 RFCIRAKNDSMRELKALGIDIVRTA-AAFTNP--HTIKLSN-RSVTGFNFLLAVERRCLP-EPRN---SALI---SADDL  234 (535)
Q Consensus       166 ~~~~~~~~~~~~~~~~~gV~~~~g~-~~~~~~--~~v~~~~-~~~~~d~lViATGs~p~~-~i~G---~~v~---~~~~~  234 (535)
                           +......+++..||+++.++ +..++.  +.|.+.+ .++.||+||||||++|+. ++||   .+++   +.+++
T Consensus        61 -----l~~~~~~~~~~~gI~~~~g~~V~~Id~~~~~V~~~~G~~i~yD~LVIATGs~p~~p~ipG~~~~~v~~~rt~~d~  135 (847)
T PRK14989         61 -----LSLVREGFYEKHGIKVLVGERAITINRQEKVIHSSAGRTVFYDKLIMATGSYPWIPPIKGSETQDCFVYRTIEDL  135 (847)
T ss_pred             -----ccCCCHHHHHhCCCEEEcCCEEEEEeCCCcEEEECCCcEEECCEEEECCCCCcCCCCCCCCCCCCeEEECCHHHH
Confidence                 11222356777899999986 444443  4565554 679999999999999998 8998   3343   55666


Q ss_pred             Hhc---cCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCc-cCcHHHHHHHHHhhhcCCeEE-cceEEEEEEE
Q psy14461        235 FRL---GAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLK-HFDQEMVRILLSSLTKAGVSI-QCCVIEKVIS  308 (535)
Q Consensus       235 ~~~---~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~-~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~  308 (535)
                      ..+   ...+++++|||||++|+|+|..|+++|.+|+++++ +.+++ .++++..+.+++.|+++||++ ++..+++|..
T Consensus       136 ~~l~~~~~~~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~~ld~~~~~~l~~~L~~~GV~v~~~~~v~~I~~  215 (847)
T PRK14989        136 NAIEACARRSKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQ  215 (847)
T ss_pred             HHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchhhhcCHHHHHHHHHHHHHCCCEEEcCCeEEEEEe
Confidence            544   24578999999999999999999999999999999 88886 689999999999999999999 9999999975


Q ss_pred             eCCC-cEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCC--
Q psy14461        309 SFDG-MKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGK--  385 (535)
Q Consensus       309 ~~~~-~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~--  385 (535)
                      +.++ ...+.+   .+|+  ++++|.|++|+|++||++++  +.+|++++++|+|.||++|+|+.|+|||+|||+. .  
T Consensus       216 ~~~~~~~~v~~---~dG~--~i~~D~Vv~A~G~rPn~~L~--~~~Gl~~~~~G~I~VD~~l~Ts~p~IYAiGD~a~-~~~  287 (847)
T PRK14989        216 EGVEARKTMRF---ADGS--ELEVDFIVFSTGIRPQDKLA--TQCGLAVAPRGGIVINDSCQTSDPDIYAIGECAS-WNN  287 (847)
T ss_pred             cCCCceEEEEE---CCCC--EEEcCEEEECCCcccCchHH--hhcCccCCCCCcEEECCCCcCCCCCEEEeeccee-EcC
Confidence            4222 334666   3787  89999999999999999865  7889999999999999999999999999999994 3  


Q ss_pred             --CCcHHHHHHHHHHHHHHHhCCCCCCCCCCCCc-EEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCC
Q psy14461        386 --PNNASMAAISARLIIERLYGMQDQLMDYSFLP-VVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPL  462 (535)
Q Consensus       386 --~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p-~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  462 (535)
                        ..+++.|..||++||.||+|... .+.....| ...+.+.+++++|..    ... . .+....  .+.       ..
T Consensus       288 ~~~gl~~~a~~~a~vaa~~i~g~~~-~~~g~~~~~~lk~~G~~v~s~G~~----~~~-~-~~~~~~--~~~-------~~  351 (847)
T PRK14989        288 RVFGLVAPGYKMAQVAVDHLLGSEN-AFEGADLSAKLKLLGVDVGGIGDA----HGR-T-PGARSY--VYL-------DE  351 (847)
T ss_pred             cccccHHHHHHHHHHHHHHhcCCCc-CCCCcccceEEEECCcceEecccc----cCC-C-CCceeE--EEE-------cC
Confidence              23788999999999999999753 34444445 556778899999931    111 0 011110  010       01


Q ss_pred             CCcchhhhhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCc--hhHHHHHHHHHHHCCCCHHHHc
Q psy14461        463 LPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQN--VAGMIFGYSLALRKFLTKAELD  533 (535)
Q Consensus       463 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~--a~e~i~~~~~~i~~~~t~~~l~  533 (535)
                                             .+.+|.||++++++++|||++++|+.  +.++++.+...+....+.++|.
T Consensus       352 -----------------------~~~~y~Klv~~~~~~~LlGa~lvGd~~~~~~l~~~~~~~~~l~~~~~~l~  401 (847)
T PRK14989        352 -----------------------SKEIYKRLIVSEDNKTLLGAVLVGDTSDYGNLLQLVLNAIELPENPDSLI  401 (847)
T ss_pred             -----------------------CCCEEEEEEEECCCCEEEEEEEECCHHHHHHHHHHHHcCCCCccchhhee
Confidence                                   24789999999999999999999995  4888888877777666666654

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=100.00  E-value=1.5e-37  Score=323.05  Aligned_cols=307  Identities=17%  Similarity=0.141  Sum_probs=233.5

Q ss_pred             EEEeeCCccHHHHHHH--HHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHH
Q psy14461         90 YLDRIGDEGILLEEEL--KRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRF  167 (535)
Q Consensus        90 ~v~iiG~G~aG~~~al--~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  167 (535)
                      +++|||+|+||+.+|.  ++.....+||||+++++..|.++.++++   +++              ..+..++..     
T Consensus         4 ~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~l~~~---~~~--------------~~~~~~~~~-----   61 (377)
T PRK04965          4 GIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHV---FSQ--------------GQRADDLTR-----   61 (377)
T ss_pred             CEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCcCcHH---HhC--------------CCCHHHhhc-----
Confidence            5799999999999875  4445678999999999887776655544   221              111222211     


Q ss_pred             HHHHHHHHHHHHHhcCcEEEEe-EEEEec--CCEEEEceeEEEcceEEEeeCceecC-CCCC-Cceech---hhHHhcc-
Q psy14461        168 CIRAKNDSMRELKALGIDIVRT-AAAFTN--PHTIKLSNRSVTGFNFLLAVERRCLP-EPRN-SALISA---DDLFRLG-  238 (535)
Q Consensus       168 ~~~~~~~~~~~~~~~gV~~~~g-~~~~~~--~~~v~~~~~~~~~d~lViATGs~p~~-~i~G-~~v~~~---~~~~~~~-  238 (535)
                           ....+++++.||+++.+ ++..++  .+.+.+++..+.||+||||||++|.. ++|| +.+++.   .++..+. 
T Consensus        62 -----~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~~~~~~~~yd~LVlATG~~~~~p~i~G~~~v~~~~~~~~~~~~~~  136 (377)
T PRK04965         62 -----QSAGEFAEQFNLRLFPHTWVTDIDAEAQVVKSQGNQWQYDKLVLATGASAFVPPIPGRELMLTLNSQQEYRAAET  136 (377)
T ss_pred             -----CCHHHHHHhCCCEEECCCEEEEEECCCCEEEECCeEEeCCEEEECCCCCCCCCCCCCCceEEEECCHHHHHHHHH
Confidence                 11234566789999865 455544  45677777789999999999999988 8999 444443   3333221 


Q ss_pred             --CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc-CcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCc
Q psy14461        239 --AWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH-FDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGM  313 (535)
Q Consensus       239 --~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~-~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~  313 (535)
                        ..+++++|||+|++|+|+|..|++.|.+|+++++ +.+++. +++++...+++.+++.||++ .++.+++++.+ ++.
T Consensus       137 ~~~~~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~-~~~  215 (377)
T PRK04965        137 QLRDAQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKT-DSG  215 (377)
T ss_pred             HhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccchhCCHHHHHHHHHHHHhCCCEEEECCeEEEEEcc-CCE
Confidence              3468999999999999999999999999999999 888764 68889999999999999999 99999999875 344


Q ss_pred             EEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCC-CCC--CcHH
Q psy14461        314 KGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVH-GKP--NNAS  390 (535)
Q Consensus       314 ~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~-~~~--~~~~  390 (535)
                      ..+++.   +|+  ++++|.+++|+|.+|+++++  +.+|++.+ +| |.||++++|+.|+|||+|||++ .+.  ....
T Consensus       216 ~~v~~~---~g~--~i~~D~vI~a~G~~p~~~l~--~~~gl~~~-~g-i~vd~~l~ts~~~VyA~GD~a~~~~~~~~~~~  286 (377)
T PRK04965        216 IRATLD---SGR--SIEVDAVIAAAGLRPNTALA--RRAGLAVN-RG-IVVDSYLQTSAPDIYALGDCAEINGQVLPFLQ  286 (377)
T ss_pred             EEEEEc---CCc--EEECCEEEECcCCCcchHHH--HHCCCCcC-CC-EEECCCcccCCCCEEEeeecEeECCceeehHH
Confidence            566663   676  89999999999999999875  66788775 46 9999999999999999999984 111  2455


Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCH
Q psy14461        391 MAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSE  433 (535)
Q Consensus       391 ~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te  433 (535)
                      .|..||++||+||+|.+.........+...+.+.++.++|...
T Consensus       287 ~a~~~g~~~a~n~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~  329 (377)
T PRK04965        287 PIQLSAMALAKNLLGQNTPLKLPAMLVKVKTPELPLQLAGETQ  329 (377)
T ss_pred             HHHHHHHHHHHHhcCCCcccccCCccEEEecCceeeEECCCCC
Confidence            6899999999999997643222222345567789999999754

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=100.00  E-value=1.1e-37  Score=349.75  Aligned_cols=359  Identities=15%  Similarity=0.135  Sum_probs=266.6

Q ss_pred             EEeeCCccHHHHHHHHH--hh-CCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHH
Q psy14461         91 LDRIGDEGILLEEELKR--QT-NQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRF  167 (535)
Q Consensus        91 v~iiG~G~aG~~~al~~--~~-~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  167 (535)
                      |+|||+|++|+.+|...  .. .+.+||||+++++++|.+..++.+   +.+.              .+.+++.      
T Consensus         1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~---l~g~--------------~~~~~l~------   57 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSV---LQGE--------------ADLDDIT------   57 (785)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHH---HCCC--------------CCHHHcc------
Confidence            58999999999998543  32 457999999999999988777765   3321              1222221      


Q ss_pred             HHHHHHHHHHHHHhcCcEEEEeE-EEEec--CCEEEEce-eEEEcceEEEeeCceecC-CCCC---Ccee---chhhHHh
Q psy14461        168 CIRAKNDSMRELKALGIDIVRTA-AAFTN--PHTIKLSN-RSVTGFNFLLAVERRCLP-EPRN---SALI---SADDLFR  236 (535)
Q Consensus       168 ~~~~~~~~~~~~~~~gV~~~~g~-~~~~~--~~~v~~~~-~~~~~d~lViATGs~p~~-~i~G---~~v~---~~~~~~~  236 (535)
                           ....+++++.||+++.++ +..++  .++|.+.+ .++.||+||||||++|+. ++||   ++++   +.+++..
T Consensus        58 -----~~~~~~~~~~gv~~~~g~~V~~Id~~~k~V~~~~g~~~~yD~LVlATGs~p~~p~ipG~~~~~v~~~rt~~d~~~  132 (785)
T TIGR02374        58 -----LNSKDWYEKHGITLYTGETVIQIDTDQKQVITDAGRTLSYDKLILATGSYPFILPIPGADKKGVYVFRTIEDLDA  132 (785)
T ss_pred             -----CCCHHHHHHCCCEEEcCCeEEEEECCCCEEEECCCcEeeCCEEEECCCCCcCCCCCCCCCCCCEEEeCCHHHHHH
Confidence                 122356677899999884 55544  45677654 679999999999999998 9998   3444   3344433


Q ss_pred             c---cCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCc-cCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeC
Q psy14461        237 L---GAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLK-HFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSF  310 (535)
Q Consensus       237 ~---~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~-~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~  310 (535)
                      +   ...+++++|||||++|+|+|..|+++|.+|+++++ +.+++ .++++..+.+.+.+++.||++ ++..++++..+ 
T Consensus       133 i~~~~~~~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~-  211 (785)
T TIGR02374       133 IMAMAQRFKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLLEKDTVEIVGA-  211 (785)
T ss_pred             HHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhhhhcCHHHHHHHHHHHHHcCCEEEeCCceEEEEcC-
Confidence            3   23568999999999999999999999999999999 88875 689999999999999999999 99999999764 


Q ss_pred             CCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCC--C-CCC
Q psy14461        311 DGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVH--G-KPN  387 (535)
Q Consensus       311 ~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~--~-~~~  387 (535)
                      +....|++.   +|+  ++++|+|++++|++||++++  +.++++++  |.|.||++|||+.|+|||+|||+.  + ...
T Consensus       212 ~~~~~v~~~---dG~--~i~~D~Vi~a~G~~Pn~~la--~~~gl~~~--ggI~Vd~~~~Ts~p~IyA~GD~a~~~~~~~g  282 (785)
T TIGR02374       212 TKADRIRFK---DGS--SLEADLIVMAAGIRPNDELA--VSAGIKVN--RGIIVNDSMQTSDPDIYAVGECAEHNGRVYG  282 (785)
T ss_pred             CceEEEEEC---CCC--EEEcCEEEECCCCCcCcHHH--HhcCCccC--CCEEECCCcccCCCCEEEeeecceeCCcccc
Confidence            233456663   787  89999999999999999875  66778775  569999999999999999999984  1 123


Q ss_pred             cHHHHHHHHHHHHHHHhCCCCCCCC-CCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcc
Q psy14461        388 NASMAAISARLIIERLYGMQDQLMD-YSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPEN  466 (535)
Q Consensus       388 ~~~~A~~~g~~aa~~i~g~~~~~~~-~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  466 (535)
                      ++..|..||++||.||+|....++. ........+++.+++++|......       +....  .+.+       .    
T Consensus       283 l~~~a~~qa~vaA~ni~g~~~~~~~~~~~~~~lk~~g~~v~s~G~~~~~~-------~~~~~--~~~d-------~----  342 (785)
T TIGR02374       283 LVAPLYEQAKVLADHICGVECEEYEGSDLSAKLKLLGVDVWSAGDAQETE-------RTTSI--KIYD-------E----  342 (785)
T ss_pred             cHHHHHHHHHHHHHHhcCCCCcCCCCCccceEEEECCcceEecccCCCCC-------CcEEE--EEEc-------C----
Confidence            6777999999999999997622222 222234557899999999765321       11111  1110       0    


Q ss_pred             hhhhhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHH
Q psy14461        467 FVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKA  530 (535)
Q Consensus       467 ~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~  530 (535)
                                         .+..|.|++++  +++|+|++++|+.. + ...+..++.++..+.
T Consensus       343 -------------------~~~~y~kl~~~--~~rLlGavlvgd~~-~-~~~L~~li~~~~~l~  383 (785)
T TIGR02374       343 -------------------QKGIYKKLVLS--DDKLLGAVLFGDTS-D-YGRLLDMVLKQADIS  383 (785)
T ss_pred             -------------------CCCEEEEEEEE--CCEEEEEEEECCHH-H-HHHHHHHHHcCCCCC
Confidence                               23579999997  46899999999743 3 345555666665443

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=100.00  E-value=2.1e-37  Score=323.89  Aligned_cols=354  Identities=14%  Similarity=0.074  Sum_probs=256.7

Q ss_pred             EEEeeCCccHHHHHHHHHhhC--CCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHH
Q psy14461         90 YLDRIGDEGILLEEELKRQTN--QRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRF  167 (535)
Q Consensus        90 ~v~iiG~G~aG~~~al~~~~~--~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  167 (535)
                      +++|||+|+||+.+|..+...  ..+|+|++++++.+|.++.++...  +.+.             ..+  ...      
T Consensus         5 ~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~--~~~~-------------~~~--~~~------   61 (396)
T PRK09754          5 TIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSM--LLED-------------SPQ--LQQ------   61 (396)
T ss_pred             cEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHH--HCCC-------------Ccc--ccc------
Confidence            579999999999998765443  458999999998888765443210  1110             000  000      


Q ss_pred             HHHHHHHHHHHHHhcCcEEEEeE-EEEec--CCEEEEce-eEEEcceEEEeeCceecC-CCCC---Cceec---hhhHHh
Q psy14461        168 CIRAKNDSMRELKALGIDIVRTA-AAFTN--PHTIKLSN-RSVTGFNFLLAVERRCLP-EPRN---SALIS---ADDLFR  236 (535)
Q Consensus       168 ~~~~~~~~~~~~~~~gV~~~~g~-~~~~~--~~~v~~~~-~~~~~d~lViATGs~p~~-~i~G---~~v~~---~~~~~~  236 (535)
                         +  ...+.+...+|+++.++ +..++  .+++.+.+ .++.||+||||||++|+. ++++   +++++   .+++..
T Consensus        62 ---~--~~~~~~~~~~i~~~~g~~V~~id~~~~~v~~~~g~~~~yd~LViATGs~~~~~p~~~~~~~~v~~~~~~~da~~  136 (396)
T PRK09754         62 ---V--LPANWWQENNVHLHSGVTIKTLGRDTRELVLTNGESWHWDQLFIATGAAARPLPLLDALGERCFTLRHAGDAAR  136 (396)
T ss_pred             ---c--CCHHHHHHCCCEEEcCCEEEEEECCCCEEEECCCCEEEcCEEEEccCCCCCCCCCCCcCCCCEEecCCHHHHHH
Confidence               0  00134556799999885 54543  45677654 679999999999999987 7665   44554   566655


Q ss_pred             cc---CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCc-cCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeC
Q psy14461        237 LG---AWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLK-HFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSF  310 (535)
Q Consensus       237 ~~---~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~-~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~  310 (535)
                      +.   ..+++++|||+|++|+|+|..|+++|.+||++++ +.+++ .+++++.+.+.+.++++||++ +++.+++++.  
T Consensus       137 l~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~--  214 (396)
T PRK09754        137 LREVLQPERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAIEHVVD--  214 (396)
T ss_pred             HHHHhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhhcCHHHHHHHHHHHHHCCCEEEeCCeeEEEEc--
Confidence            43   2478999999999999999999999999999999 88886 468888899999999999999 9999999975  


Q ss_pred             CCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCC-CC----
Q psy14461        311 DGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVH-GK----  385 (535)
Q Consensus       311 ~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~-~~----  385 (535)
                      ++.+.+++   .+|+  ++++|.|++++|.+||+.++  +.++++.+  +.|.||+++||+.|+|||+|||+. ..    
T Consensus       215 ~~~~~v~l---~~g~--~i~aD~Vv~a~G~~pn~~l~--~~~gl~~~--~gi~vd~~~~ts~~~IyA~GD~a~~~~~~g~  285 (396)
T PRK09754        215 GEKVELTL---QSGE--TLQADVVIYGIGISANDQLA--REANLDTA--NGIVIDEACRTCDPAIFAGGDVAITRLDNGA  285 (396)
T ss_pred             CCEEEEEE---CCCC--EEECCEEEECCCCChhhHHH--HhcCCCcC--CCEEECCCCccCCCCEEEccceEeeeCCCCC
Confidence            24455666   3677  79999999999999998765  56677653  459999999999999999999983 11    


Q ss_pred             ---CCcHHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCC
Q psy14461        386 ---PNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPL  462 (535)
Q Consensus       386 ---~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  462 (535)
                         +.+++.|..||++||+||+|.... +......|+.+++..+.++|.+..   .     .+. ...   .      + 
T Consensus       286 ~~~~~~~~~A~~qg~~aa~ni~g~~~~-~~~~p~~~~~~~~~~~~~~G~~~~---~-----~~~-~~~---~------~-  345 (396)
T PRK09754        286 LHRCESWENANNQAQIAAAAMLGLPLP-LLPPPWFWSDQYSDNLQFIGDMRG---D-----DWL-CRG---N------P-  345 (396)
T ss_pred             EEEECcHHHHHHHHHHHHHHhcCCCCC-CCCCCceEEEeCCccEEEeeCCCC---C-----EEE-Eec---C------C-
Confidence               134678999999999999986532 233334477888999999997542   0     111 110   0      0 


Q ss_pred             CCcchhhhhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCH
Q psy14461        463 LPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTK  529 (535)
Q Consensus       463 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~  529 (535)
                                             ....|+.+++  ++++|+|+..+|+.  .-...+..+|+.+.++
T Consensus       346 -----------------------~~~~~~~~~~--~~~~l~g~~~~~~~--~~~~~~~~~~~~~~~~  385 (396)
T PRK09754        346 -----------------------ETQKAIWFNL--QNGVLIGAVTLNQG--REIRPIRKWIQSGKTF  385 (396)
T ss_pred             -----------------------CCceEEEEEe--eCCEEEEEEEECCH--HHHHHHHHHHHCCCCC
Confidence                                   1223554444  36899999999973  3345555677777664

>PRK12831 putative oxidoreductase; Provisional

Probab=100.00  E-value=4e-36  Score=318.94  Aligned_cols=327  Identities=17%  Similarity=0.154  Sum_probs=238.0

Q ss_pred             ccccccCCCCCCChhHHHHh------------hhcCCcEEEEeCCCchh--hHHHH---------------HHHHHh---
Q psy14461         34 TASSCDLLPSFETPPAYISR------------LSYENRILIFTHAVLRE--ENARA---------------ERYLNA---   81 (535)
Q Consensus        34 ~~~~~~~~p~~~~l~~~~~~------------~i~~~~v~v~~k~~cp~--~~~~~---------------k~~~~~---   81 (535)
                      +..+|   |...+++.|+..            +.+.|++..+..+.||+  +|..+               +++..+   
T Consensus        50 C~~~C---P~~~~i~~~~~~~~~~~~~~a~~~~~~~np~p~~~grvC~~~~~Ce~~C~r~~~~~~v~I~~l~r~~~~~~~  126 (464)
T PRK12831         50 CVKGC---PVSINIPGFISKLKEGDFEEAAKIIAKYNALPAVCGRVCPQESQCEGKCVLGIKGEPVAIGKLERFVADWAR  126 (464)
T ss_pred             hhhhC---CCCCCHHHHHHHHHCCCHHHHHHHHHHhCCchhhhhccCCCCCChHHHhcCCCCCCCeehhHHHHHHHHHHH
Confidence            33456   777788887654            45668998888999995  68764               333321   


Q ss_pred             -cC------CcceEEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccc-cccccccccccchhhccccccccccc
Q psy14461         82 -RG------DRFAVLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRK-KRRLYYPVAMSDLELEQDSTSALNVT  153 (535)
Q Consensus        82 -~~------~~~~~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~-~~l~~~~~~i~~~~~~~~~~~~~~~~  153 (535)
                       .+      ....-.+|+|||+||+|+++|..+...+.+|+|||+.+.+++.. .++|.+.                   
T Consensus       127 ~~~~~~~~~~~~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~-------------------  187 (464)
T PRK12831        127 ENGIDLSETEEKKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYGIPEFR-------------------  187 (464)
T ss_pred             HcCCCCCCCcCCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeeecCCCcc-------------------
Confidence             11      11234689999999999999999988999999999987653221 1222220                   


Q ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEce--eEEEcceEEEeeCc-eecC-CCCC---C
Q psy14461        154 IRNWNAATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSN--RSVTGFNFLLAVER-RCLP-EPRN---S  226 (535)
Q Consensus       154 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~--~~~~~d~lViATGs-~p~~-~i~G---~  226 (535)
                       +....+..+           ..+.++..||+++.++..   .+++.+++  ..+.||+||||||+ .|+. ++||   +
T Consensus       188 -l~~~~~~~~-----------~~~~~~~~gv~i~~~~~v---~~~v~~~~~~~~~~~d~viiAtGa~~~~~l~ipG~~~~  252 (464)
T PRK12831        188 -LPKETVVKK-----------EIENIKKLGVKIETNVVV---GKTVTIDELLEEEGFDAVFIGSGAGLPKFMGIPGENLN  252 (464)
T ss_pred             -CCccHHHHH-----------HHHHHHHcCCEEEcCCEE---CCcCCHHHHHhccCCCEEEEeCCCCCCCCCCCCCcCCc
Confidence             011112221           124567789999888742   23444443  34679999999999 6888 9999   5


Q ss_pred             ceechhhHHhcc--------------CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-Cc-CCccCcHHHHHHHHHh
Q psy14461        227 ALISADDLFRLG--------------AWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RR-LLKHFDQEMVRILLSS  290 (535)
Q Consensus       227 ~v~~~~~~~~~~--------------~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~-~l~~~~~~~~~~~~~~  290 (535)
                      ++++..+++...              ..+++|+|||||++|+|+|..|.++|.+||++++ +. .++....++     +.
T Consensus       253 gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a~~~e~-----~~  327 (464)
T PRK12831        253 GVFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPARVEEV-----HH  327 (464)
T ss_pred             CcEEHHHHHHHHHhcccccccccCcccCCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHH-----HH
Confidence            788888876431              3568999999999999999999999999999998 43 344332222     23


Q ss_pred             hhcCCeEE-cceEEEEEEEeCCCcEE-EEEec-----C-C---------CCCceEEEcCEEEEccCCCCCCCCCCccc-c
Q psy14461        291 LTKAGVSI-QCCVIEKVISSFDGMKG-VRGFH-----P-E---------SKEPFADVFKTVVNAMEKKFDFAALNLHH-I  352 (535)
Q Consensus       291 l~~~gV~i-~~~~v~~i~~~~~~~~~-v~~~~-----~-~---------~G~~~~~~~D~vi~a~G~~p~~~~l~l~~-~  352 (535)
                      ++++||++ +++.++++..+++++++ |++..     . .         +|+++++++|.||+|+|+.|++.++  .. .
T Consensus       328 a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~--~~~~  405 (464)
T PRK12831        328 AKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNPLIS--STTK  405 (464)
T ss_pred             HHHcCCEEEecccceEEEecCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCCCCChhhh--cccC
Confidence            56789999 99999999764344442 33320     0 0         3455579999999999999999876  44 6


Q ss_pred             CeeecCCCceEcCCC-CCcCCCCEEEeCCcCCCCCCcHHHHHHHHHHHHHHHhC
Q psy14461        353 GVDIKKKSYVVCNEK-DQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYG  405 (535)
Q Consensus       353 gl~~~~~G~i~vd~~-~~T~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g  405 (535)
                      +++++++|+|.||++ ++||.|+|||+|||+ .++.+++.|+.+|+.||.+|..
T Consensus       406 gl~~~~~G~i~vd~~~~~Ts~pgVfAaGD~~-~g~~~v~~Ai~~G~~AA~~I~~  458 (464)
T PRK12831        406 GLKINKRGCIVADEETGLTSKEGVFAGGDAV-TGAATVILAMGAGKKAAKAIDE  458 (464)
T ss_pred             CceECCCCcEEECCCCCccCCCCEEEeCCCC-CCchHHHHHHHHHHHHHHHHHH
Confidence            888888999999988 999999999999999 7788899999999999999863

>KOG1336|consensus

Probab=100.00  E-value=6.2e-36  Score=300.90  Aligned_cols=417  Identities=16%  Similarity=0.157  Sum_probs=288.9

Q ss_pred             hcCCccccccccCCCccccccCCCCCCChhHHHHhhhcCCcEEEEeCCCchhhHHHHHHHHHhcCCcceEEEEEeeCCcc
Q psy14461         19 IHAIPSFHEAKTCSPTASSCDLLPSFETPPAYISRLSYENRILIFTHAVLREENARAERYLNARGDRFAVLYLDRIGDEG   98 (535)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~~v~v~~k~~cp~~~~~~k~~~~~~~~~~~~~~v~iiG~G~   98 (535)
                      =|-.||||.+||.+.++- .+.+|+++++ .++.. -.+..++.-.+++-   -. ...-....+  +...+++|+|+|+
T Consensus        14 g~v~cpwhgacfn~~~gd-iedfP~~~sl-~~v~~-~~~~~~m~~~~~~~---~~-~~~~~~~~g--~~ar~fvivGgG~   84 (478)
T KOG1336|consen   14 GRVRCPWHGACFNLSTGD-IEDFPGLDSL-SRVVV-DNDGQVMQEEKRFK---LV-IVGGGVAAG--YAARHFVIVGGGP   84 (478)
T ss_pred             CcccccccceeecCCcCc-hhhCcCccce-eeEEe-cCccceeeecccee---ee-eeccccccc--cccceEEEEcCCc
Confidence            366899999999998865 5569999998 22111 11222322112110   00 000001122  5578899999999


Q ss_pred             HHHHHHH--HHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHHHHHHHHHHH
Q psy14461         99 ILLEEEL--KRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRFCIRAKNDSM  176 (535)
Q Consensus        99 aG~~~al--~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  176 (535)
                      +|..|+.  ++.....+++|+-++.+++|.+..|+.......                              ..+.....
T Consensus        85 ~g~vaie~~r~~g~~~ri~l~~~~~~~pydr~~Ls~~~~~~~------------------------------~~~a~r~~  134 (478)
T KOG1336|consen   85 GGAVAIETLRQVGFTERIALVKREYLLPYDRARLSKFLLTVG------------------------------EGLAKRTP  134 (478)
T ss_pred             hhhhhHhhHHhhCCCcceEEEeccccCcccchhcccceeecc------------------------------ccccccCh
Confidence            8887764  555566789999999999898876665421101                              01111223


Q ss_pred             HHHHhcCcEEEEeEE-EE--ecCCEEEEce-eEEEcceEEEeeCceecC-CCCC---CceechhhHHh------ccCCCC
Q psy14461        177 RELKALGIDIVRTAA-AF--TNPHTIKLSN-RSVTGFNFLLAVERRCLP-EPRN---SALISADDLFR------LGAWPG  242 (535)
Q Consensus       177 ~~~~~~gV~~~~g~~-~~--~~~~~v~~~~-~~~~~d~lViATGs~p~~-~i~G---~~v~~~~~~~~------~~~~~k  242 (535)
                      +++++.+|+++.++- +.  ...+++...+ +.+.|++|+||||++|++ ++||   +++.+..++.+      .-....
T Consensus       135 e~Yke~gIe~~~~t~v~~~D~~~K~l~~~~Ge~~kys~LilATGs~~~~l~~pG~~~~nv~~ireieda~~l~~~~~~~~  214 (478)
T KOG1336|consen  135 EFYKEKGIELILGTSVVKADLASKTLVLGNGETLKYSKLIIATGSSAKTLDIPGVELKNVFYLREIEDANRLVAAIQLGG  214 (478)
T ss_pred             hhHhhcCceEEEcceeEEeeccccEEEeCCCceeecceEEEeecCccccCCCCCccccceeeeccHHHHHHHHHHhccCc
Confidence            678889999998863 33  3467777765 899999999999999999 9999   55544333322      223467


Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCc-cCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcE-EEEE
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLK-HFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMK-GVRG  318 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~-~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~-~v~~  318 (535)
                      +|+++|+|++|+|+|..|...+.+||+|++ +.+++ .+.+++.+.++++++++||++ .++.+.+++..+++++ .|.+
T Consensus       215 ~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l  294 (478)
T KOG1336|consen  215 KVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLPRLFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKL  294 (478)
T ss_pred             eEEEECchHHHHHHHHHHHhcCceEEEEccCccchhhhhhHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEe
Confidence            899999999999999999999999999999 88887 788999999999999999999 9999999988755554 4666


Q ss_pred             ecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCC----------Cc
Q psy14461        319 FHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKP----------NN  388 (535)
Q Consensus       319 ~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~----------~~  388 (535)
                      .   +|+  ++++|+|++.+|.+||+.++  +. +..++++|+|.||+++||+.|||||+||+++ .|          .-
T Consensus       295 ~---dg~--~l~adlvv~GiG~~p~t~~~--~~-g~~~~~~G~i~V~~~f~t~~~~VyAiGDva~-fp~~~~~~~~~v~H  365 (478)
T KOG1336|consen  295 K---DGK--TLEADLVVVGIGIKPNTSFL--EK-GILLDSKGGIKVDEFFQTSVPNVYAIGDVAT-FPLKGYGEDRRVEH  365 (478)
T ss_pred             c---cCC--EeccCeEEEeeccccccccc--cc-cceecccCCEeehhceeeccCCcccccceee-cccccccccccchH
Confidence            4   788  99999999999999999998  44 7778899999999999999999999999995 21          12


Q ss_pred             HHHHHHHHHHHHHHHhCCCCCCCCCCCCc--EEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcc
Q psy14461        389 ASMAAISARLIIERLYGMQDQLMDYSFLP--VVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPEN  466 (535)
Q Consensus       389 ~~~A~~~g~~aa~~i~g~~~~~~~~~~~p--~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  466 (535)
                      ...|..+|+.|...+.......  +..+|  ++.++...+-+-|..       .+  +. +...            .   
T Consensus       366 ~~~A~~~g~~av~ai~~~~~~~--~~~lPyf~t~~f~~~~~~~G~g-------~~--~~-v~~G------------~---  418 (478)
T KOG1336|consen  366 VDHARASGRQAVKAIKMAPQDA--YDYLPYFYTRFFSLSWRFAGDG-------VG--DV-VLFG------------D---  418 (478)
T ss_pred             HHHHHHHHHhhhhhhhccCccc--ccccchHHHHHhhhhccccCcC-------cc--ce-eeec------------c---
Confidence            2358888886665554433222  33344  333333322222221       00  00 0000            0   


Q ss_pred             hhhhhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHH
Q psy14461        467 FVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAEL  532 (535)
Q Consensus       467 ~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l  532 (535)
                                        .+...|+--+++   +..+|+..-|- -.+..+.++-.++++-.++.+
T Consensus       419 ------------------~e~~~f~ay~~k---~~~v~a~~~~g-~~~~~~~~a~l~~~~~~v~~~  462 (478)
T KOG1336|consen  419 ------------------LEPGSFGAYWIK---GDKVGAVAEGG-RDEEVSQFAKLARQGPEVTSL  462 (478)
T ss_pred             ------------------cccccceeeEee---ccEEEEEeccC-CChHHHHHHHHHhcCCcchhh
Confidence                              022336666663   67777776654 488899999999999877643

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=100.00  E-value=1.2e-35  Score=314.64  Aligned_cols=328  Identities=16%  Similarity=0.145  Sum_probs=237.0

Q ss_pred             CccccccCCCCCCChhHHHHh------------hhcCCcEEEEeCCCchh--hHHHH-------------------HHHH
Q psy14461         33 PTASSCDLLPSFETPPAYISR------------LSYENRILIFTHAVLRE--ENARA-------------------ERYL   79 (535)
Q Consensus        33 ~~~~~~~~~p~~~~l~~~~~~------------~i~~~~v~v~~k~~cp~--~~~~~-------------------k~~~   79 (535)
                      ++..+|   |.-.+++.|+..            +.+.|++.....+.||+  .|..+                   +++.
T Consensus        37 ~C~~~C---P~~~~i~~~~~~~~~g~~~~A~~~~~~~~p~p~~~grvC~~~~~Ce~~C~~~~~~~~~~~~v~i~~l~~~~  113 (449)
T TIGR01316        37 PCIKGC---PVHVPIPEFIAKIQEGDFKGAVDIIKTTSLLPAICGRVCPQERQCEGQCTVGKMFKDVGKPVSIGALERFV  113 (449)
T ss_pred             ChhhhC---CCCCCHHHHHHHHHCCCHHHHHHHHHHhCChhHHhccCCCCccchHhhCcCCCcCCCCCCCccHHHHHHHH
Confidence            344568   777888888653            56668888888899995  57643                   1211


Q ss_pred             H----hcCC-------cceEEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccc
Q psy14461         80 N----ARGD-------RFAVLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTS  148 (535)
Q Consensus        80 ~----~~~~-------~~~~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~  148 (535)
                      .    ..+.       ...-.+|+|||+|++|+.+|..+...+.+|+|||+.+.+++    +..+  +++..        
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG----~l~~--gip~~--------  179 (449)
T TIGR01316       114 ADWERQHGIETEPEKAPSTHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGG----VVTY--GIPEF--------  179 (449)
T ss_pred             HhHHHhcCCCcCCCCCCCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCc----Eeee--cCCCc--------
Confidence            1    1111       11236899999999999999988888999999999875532    2211  01110        


Q ss_pred             cccccccCHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEceeEEEcceEEEeeCc-eecC-CCCC-
Q psy14461        149 ALNVTIRNWNAATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAVER-RCLP-EPRN-  225 (535)
Q Consensus       149 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~~~~~~d~lViATGs-~p~~-~i~G-  225 (535)
                           ..+ .++..+           ....++..||+++.++..   .+++++.+....||+||||||+ .|+. ++|| 
T Consensus       180 -----~~~-~~~~~~-----------~~~~l~~~gv~~~~~~~v---~~~v~~~~~~~~yd~viiAtGa~~p~~~~ipG~  239 (449)
T TIGR01316       180 -----RLP-KEIVVT-----------EIKTLKKLGVTFRMNFLV---GKTATLEELFSQYDAVFIGTGAGLPKLMNIPGE  239 (449)
T ss_pred             -----cCC-HHHHHH-----------HHHHHHhCCcEEEeCCcc---CCcCCHHHHHhhCCEEEEeCCCCCCCcCCCCCC
Confidence                 111 112211           124466789999988742   3445554434579999999998 6887 8999 


Q ss_pred             --CceechhhHHhc---------------cCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcC-CccCcHHHHHH
Q psy14461        226 --SALISADDLFRL---------------GAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRL-LKHFDQEMVRI  286 (535)
Q Consensus       226 --~~v~~~~~~~~~---------------~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~-l~~~~~~~~~~  286 (535)
                        .++++..+++..               ...+++|+|||||++|+|+|..+.++|.+||++++ ++. ++...     .
T Consensus       240 ~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~~~~-----~  314 (449)
T TIGR01316       240 ELCGVYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDMTARV-----E  314 (449)
T ss_pred             CCCCcEEHHHHHHHHhhcccccccccCCcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccCCCCH-----H
Confidence              567887776532               12458999999999999999999999999999998 542 22221     2


Q ss_pred             HHHhhhcCCeEE-cceEEEEEEEeCCCcE-EEEEec------CCC---------CCceEEEcCEEEEccCCCCCCCCCCc
Q psy14461        287 LLSSLTKAGVSI-QCCVIEKVISSFDGMK-GVRGFH------PES---------KEPFADVFKTVVNAMEKKFDFAALNL  349 (535)
Q Consensus       287 ~~~~l~~~gV~i-~~~~v~~i~~~~~~~~-~v~~~~------~~~---------G~~~~~~~D~vi~a~G~~p~~~~l~l  349 (535)
                      ..+.++++||++ +++.++++..++++++ .|++..      ..+         |+++++++|.||+|+|+.|++.++  
T Consensus       315 ~~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~~l--  392 (449)
T TIGR01316       315 EIAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNPIMA--  392 (449)
T ss_pred             HHHHHHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCCchhh--
Confidence            234567889999 9999999976434444 344431      012         344579999999999999998765  


Q ss_pred             cccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCCCcHHHHHHHHHHHHHHHhC
Q psy14461        350 HHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYG  405 (535)
Q Consensus       350 ~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g  405 (535)
                      +..+++++++|+|.||++++|+.|+|||+|||+ .++.++..|+.||+.||.+|..
T Consensus       393 ~~~gl~~~~~G~i~vd~~~~Ts~~~VfA~GD~~-~g~~~v~~Ai~~G~~AA~~I~~  447 (449)
T TIGR01316       393 ETTRLKTSERGTIVVDEDQRTSIPGVFAGGDII-LGAATVIRAMGQGKRAAKSINE  447 (449)
T ss_pred             hccCcccCCCCeEEeCCCCccCCCCEEEecCCC-CCcHHHHHHHHHHHHHHHHHHh
Confidence            677888888999999999999999999999999 7888999999999999999853

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=100.00  E-value=7.3e-35  Score=329.43  Aligned_cols=340  Identities=14%  Similarity=0.081  Sum_probs=246.4

Q ss_pred             CCccccccccC---CCccccccCCCCCCChhHHHH------------hhhcCCcEEEEeCCCchh--hHHHH--------
Q psy14461         21 AIPSFHEAKTC---SPTASSCDLLPSFETPPAYIS------------RLSYENRILIFTHAVLRE--ENARA--------   75 (535)
Q Consensus        21 ~~~~~~~~~~~---~~~~~~~~~~p~~~~l~~~~~------------~~i~~~~v~v~~k~~cp~--~~~~~--------   75 (535)
                      ..||||.+.+.   .....+|   |..++++.|+.            .+.+.|++..++.+.||+  .|..+        
T Consensus       194 ~~p~C~~~~~~~~~~~~~~~C---P~~~~Ip~~i~~i~~g~~~~A~~~i~~~np~p~~~GrVCp~~~~CE~~C~~~~~pV  270 (944)
T PRK12779        194 DDKPCELGVLVQGKAEPKGGC---PVKIHIPEMLDLLGNGKHREALELIESCNPLPNVTGRVCPQELQCQGVCTHTKRPI  270 (944)
T ss_pred             CCCCCCCCcccccccCcCCCC---cCCCcHHHHHHHHHCCCHHHHHHHHHHhCChhHHhcCcCCCccCHHHhccCCCcCc
Confidence            56889876555   2234578   66677776644            467789999999999995  47654        


Q ss_pred             -----HHHHHhc------------C------CcceEEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccc-ccccc
Q psy14461         76 -----ERYLNAR------------G------DRFAVLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFR-KKRRL  131 (535)
Q Consensus        76 -----k~~~~~~------------~------~~~~~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~-~~~l~  131 (535)
                           ++...+.            .      .+..-.+|+|||+||||+++|..+...+++|||||+.+.+++. ..++|
T Consensus       271 ~I~~ler~i~d~~~~~~~~~~~~~~~~~~~~~~~~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP  350 (944)
T PRK12779        271 EIGQLEWYLPQHEKLVNPNANERFAGRISPWAAAVKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIP  350 (944)
T ss_pred             chhHHHHHHHHHHHhhchhhhhcccccccccccCCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCC
Confidence                 2211110            0      0112367899999999999999999999999999998866432 12233


Q ss_pred             cccccccchhhcccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEce-eEEEcce
Q psy14461        132 YYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSN-RSVTGFN  210 (535)
Q Consensus       132 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~-~~~~~d~  210 (535)
                      .+                    .. ..+++++.           .+.++..||+|+.+..   -++++++++ ....||+
T Consensus       351 ~~--------------------rl-p~~vi~~~-----------i~~l~~~Gv~f~~n~~---vG~dit~~~l~~~~yDA  395 (944)
T PRK12779        351 EF--------------------RL-PNQLIDDV-----------VEKIKLLGGRFVKNFV---VGKTATLEDLKAAGFWK  395 (944)
T ss_pred             CC--------------------cC-hHHHHHHH-----------HHHHHhhcCeEEEeEE---eccEEeHHHhccccCCE
Confidence            22                    11 11233322           2556778999998874   245677665 4467999


Q ss_pred             EEEeeCce-ecC-CCCC---CceechhhHHhcc----------------CCCCcEEEECCChHHHHHHHHHHhCCCcEEE
Q psy14461        211 FLLAVERR-CLP-EPRN---SALISADDLFRLG----------------AWPGKTLVLGGSLMAVEIAATLNFLGVPVTL  269 (535)
Q Consensus       211 lViATGs~-p~~-~i~G---~~v~~~~~~~~~~----------------~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtl  269 (535)
                      ||||||++ |+. +|||   ++++++.+++...                ..+++|+|||||++|+|+|..+.++|++||+
T Consensus       396 V~LAtGA~~pr~l~IpG~dl~GV~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtl  475 (944)
T PRK12779        396 IFVGTGAGLPTFMNVPGEHLLGVMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNTAMDAARTAKRLGGNVTI  475 (944)
T ss_pred             EEEeCCCCCCCcCCCCCCcCcCcEEHHHHHHHHHhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCEEEE
Confidence            99999995 777 9999   6788888887420                1358999999999999999999999999999


Q ss_pred             EEc-C-cCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCC-cEE-EEEe------c--------CCCCCceEEE
Q psy14461        270 VYS-R-RLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDG-MKG-VRGF------H--------PESKEPFADV  330 (535)
Q Consensus       270 v~~-~-~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~-~~~-v~~~------~--------~~~G~~~~~~  330 (535)
                      +++ + ..+|....++.    . ..++||++ ++..+++|..++++ .++ +++.      .        ..+|++++++
T Consensus       476 v~rr~~~~mpa~~~e~~----~-a~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~  550 (944)
T PRK12779        476 VYRRTKSEMPARVEELH----H-ALEEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVP  550 (944)
T ss_pred             EEecCcccccccHHHHH----H-HHHCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCceeeecCCceEEEE
Confidence            998 4 34554333332    2 23569999 99999999765222 231 2221      0        0135566899


Q ss_pred             cCEEEEccCCCCCCCCCCccccCeeecCCCceEcCC-CCCcCCCCEEEeCCcCCCCCCcHHHHHHHHHHHHHHHhC
Q psy14461        331 FKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNE-KDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYG  405 (535)
Q Consensus       331 ~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~-~~~T~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g  405 (535)
                      +|.||+|+|+.|+.... ....+++++++|.|.||+ +++||.|+|||+|||+ .++.++..|+.+|+.||.+|..
T Consensus       551 aD~VI~AiG~~p~~~l~-~~~~gle~~~~G~I~vd~~~~~Ts~pgVFAaGD~~-~G~~~vv~Ai~eGr~AA~~I~~  624 (944)
T PRK12779        551 VDLVIMALGNTANPIMK-DAEPGLKTNKWGTIEVEKGSQRTSIKGVYSGGDAA-RGGSTAIRAAGDGQAAAKEIVG  624 (944)
T ss_pred             CCEEEEcCCcCCChhhh-hcccCceECCCCCEEECCCCCccCCCCEEEEEcCC-CChHHHHHHHHHHHHHHHHHHH
Confidence            99999999999997543 234578889999999996 5899999999999999 7788999999999999999964

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=100.00  E-value=3.8e-34  Score=301.59  Aligned_cols=275  Identities=16%  Similarity=0.092  Sum_probs=214.2

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRFC  168 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  168 (535)
                      .+|+|||+|.+|+.++.++.....+|||||+++++.|.+ .++++   +.+              ..+..++..      
T Consensus        11 ~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~~~-~l~~~---~~g--------------~~~~~~~~~------   66 (424)
T PTZ00318         11 PNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFTP-LLPQT---TTG--------------TLEFRSICE------   66 (424)
T ss_pred             CeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcchhh-hHHHh---ccc--------------CCChHHhHH------
Confidence            468999999999999876655568999999999876653 34433   222              112222221      


Q ss_pred             HHHHHHHHHHHHhcCcEEEEeEEEEec--CCEEEE----------c-eeEEEcceEEEeeCceecC-CCCC--Cce---e
Q psy14461        169 IRAKNDSMRELKALGIDIVRTAAAFTN--PHTIKL----------S-NRSVTGFNFLLAVERRCLP-EPRN--SAL---I  229 (535)
Q Consensus       169 ~~~~~~~~~~~~~~gV~~~~g~~~~~~--~~~v~~----------~-~~~~~~d~lViATGs~p~~-~i~G--~~v---~  229 (535)
                           .+...++..+++++.+++..+|  .+.|.+          . +.++.||+||||||++|.. ++||  +++   .
T Consensus        67 -----~~~~~~~~~~~~~i~~~V~~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~~~ipG~~e~~~~~~  141 (424)
T PTZ00318         67 -----PVRPALAKLPNRYLRAVVYDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTFNIPGVEERAFFLK  141 (424)
T ss_pred             -----HHHHHhccCCeEEEEEEEEEEEcCCCEEEEecccccccccCCceEecCCEEEECCCcccCCCCCCCHHHcCCCCC
Confidence                 2335566678999999988765  567777          2 2579999999999999988 8999  332   2


Q ss_pred             chhhHHhcc--------------------CCCCcEEEECCChHHHHHHHHHHh--------------CCCcEEEEEc-Cc
Q psy14461        230 SADDLFRLG--------------------AWPGKTLVLGGSLMAVEIAATLNF--------------LGVPVTLVYS-RR  274 (535)
Q Consensus       230 ~~~~~~~~~--------------------~~~k~vvViGgG~~g~e~A~~l~~--------------~g~~Vtlv~~-~~  274 (535)
                      +.+++..+.                    ...++++|||||++|+|+|..|+.              .+.+||++++ ++
T Consensus       142 ~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~  221 (424)
T PTZ00318        142 EVNHARGIRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSE  221 (424)
T ss_pred             CHHHHHHHHHHHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCc
Confidence            333322210                    012489999999999999999875              3789999999 89


Q ss_pred             CCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccC
Q psy14461        275 LLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIG  353 (535)
Q Consensus       275 ~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~g  353 (535)
                      +++.+++++.+.+++.|+++||++ .+++|+++..+     .|+++   +|+  ++++|.+++++|.+|+. ++  +.++
T Consensus       222 ll~~~~~~~~~~~~~~L~~~gV~v~~~~~v~~v~~~-----~v~~~---~g~--~i~~d~vi~~~G~~~~~-~~--~~~~  288 (424)
T PTZ00318        222 VLGSFDQALRKYGQRRLRRLGVDIRTKTAVKEVLDK-----EVVLK---DGE--VIPTGLVVWSTGVGPGP-LT--KQLK  288 (424)
T ss_pred             ccccCCHHHHHHHHHHHHHCCCEEEeCCeEEEEeCC-----EEEEC---CCC--EEEccEEEEccCCCCcc-hh--hhcC
Confidence            999999999999999999999999 99999999742     35563   677  89999999999999984 44  6678


Q ss_pred             eeecCCCceEcCCCCC-cCCCCEEEeCCcCC----CCCCcHHHHHHHHHHHHHHHhC
Q psy14461        354 VDIKKKSYVVCNEKDQ-TSVGNIFAVGGIVH----GKPNNASMAAISARLIIERLYG  405 (535)
Q Consensus       354 l~~~~~G~i~vd~~~~-T~~~~IyA~GD~~~----~~~~~~~~A~~~g~~aa~~i~g  405 (535)
                      ++++++|+|.||+++| |+.|||||+|||+.    ..++.+..|++||+++|+||.+
T Consensus       289 l~~~~~G~I~Vd~~l~~~~~~~IfAiGD~a~~~~~~~~~~~~~A~~qg~~~A~ni~~  345 (424)
T PTZ00318        289 VDKTSRGRISVDDHLRVKPIPNVFALGDCAANEERPLPTLAQVASQQGVYLAKEFNN  345 (424)
T ss_pred             CcccCCCcEEeCCCcccCCCCCEEEEeccccCCCCCCCCchHHHHHHHHHHHHHHHH
Confidence            8888899999999999 69999999999994    1366788999999999999975

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=100.00  E-value=7.9e-34  Score=316.04  Aligned_cols=343  Identities=16%  Similarity=0.167  Sum_probs=244.3

Q ss_pred             chhhhcCCccccccccCCCccccccCCCCCCChhHHHHh------------hhcCCcEEEEeCCCchhhHHHH-------
Q psy14461         15 GLNAIHAIPSFHEAKTCSPTASSCDLLPSFETPPAYISR------------LSYENRILIFTHAVLREENARA-------   75 (535)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~------------~i~~~~v~v~~k~~cp~~~~~~-------   75 (535)
                      +-+.++..+++. .+...|+..+|   |...+++.|+..            +.+.|++...+.+.||++|..+       
T Consensus       431 ~~~~~~~~~p~~-~c~~aPC~~~C---P~~~dIp~yi~li~~g~~~~A~~~I~~~nPlP~icGrVCph~Ce~~C~R~~~d  506 (1019)
T PRK09853        431 ESRKVAEDLPLT-DCYVAPCVTAC---PINQDIPEYIRLVGEGRYAEALELIYQRNALPAITGHICDHQCQYNCTRLDYD  506 (1019)
T ss_pred             ccccccccCCcc-CCCCCccccCC---CCCCcHHHHHHHHHCCCHHHHHHHHHHhCChhhHhhCcCCchhHHHhcCCCCC
Confidence            334444444421 22335666778   888888888653            5667898888899999988764       


Q ss_pred             --------HHHHHhc-------C---C--cceEEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccc
Q psy14461         76 --------ERYLNAR-------G---D--RFAVLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPV  135 (535)
Q Consensus        76 --------k~~~~~~-------~---~--~~~~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~  135 (535)
                              |+.....       .   .  ...-.+|+|||+||+|+++|..+...+.+|+|||+.+.+++.    ..+  
T Consensus       507 ~pV~I~~Lkr~a~d~~~~~~~~~~~~~~~~~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~----lr~--  580 (1019)
T PRK09853        507 EAVNIRELKKVALEKGWDEYKQRWHKPAGIGSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGV----VKN--  580 (1019)
T ss_pred             CCeeccHHHHHHHhhHHHhcccccCCCCccCCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcc----eee--
Confidence                    3333211       0   0  112357999999999999999998899999999998876432    211  


Q ss_pred             cccchhhcccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEce-eEEEcceEEEe
Q psy14461        136 AMSDLELEQDSTSALNVTIRNWNAATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSN-RSVTGFNFLLA  214 (535)
Q Consensus       136 ~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~-~~~~~d~lViA  214 (535)
                      .+++.             .+. .++..+           ..+.++..||+++.++..     .+.++. ....||+||||
T Consensus       581 ~IP~~-------------Rlp-~evL~~-----------die~l~~~GVe~~~gt~V-----di~le~L~~~gYDaVILA  630 (1019)
T PRK09853        581 IIPQF-------------RIP-AELIQH-----------DIEFVKAHGVKFEFGCSP-----DLTVEQLKNEGYDYVVVA  630 (1019)
T ss_pred             ecccc-------------ccc-HHHHHH-----------HHHHHHHcCCEEEeCcee-----EEEhhhheeccCCEEEEC
Confidence            02211             011 111111           124566789999988643     234433 45679999999


Q ss_pred             eCceec-C-CCCC--CceechhhHHhc-------cCCCCcEEEECCChHHHHHHHHHHhC-C-CcEEEEEc-C-cCCccC
Q psy14461        215 VERRCL-P-EPRN--SALISADDLFRL-------GAWPGKTLVLGGSLMAVEIAATLNFL-G-VPVTLVYS-R-RLLKHF  279 (535)
Q Consensus       215 TGs~p~-~-~i~G--~~v~~~~~~~~~-------~~~~k~vvViGgG~~g~e~A~~l~~~-g-~~Vtlv~~-~-~~l~~~  279 (535)
                      ||+++. . ++||  +++++..+++..       ...+++|+|||||++|+|+|..+.+. | .+|+++++ + ..+|..
T Consensus       631 TGA~~~~~l~IpG~~~gV~saldfL~~~k~~~~~~~~GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~~~MPA~  710 (1019)
T PRK09853        631 IGADKNGGLKLEGGNQNVIKALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQEMPAW  710 (1019)
T ss_pred             cCCCCCCCCCCCCccCCceehHHHHHHHhhhcccccCCCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCccccccc
Confidence            999854 4 7888  457766665532       13579999999999999999999888 4 48999998 4 566766


Q ss_pred             cHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEE---Eec---------CCCCCceEEEcCEEEEccCCCCCCCC
Q psy14461        280 DQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVR---GFH---------PESKEPFADVFKTVVNAMEKKFDFAA  346 (535)
Q Consensus       280 ~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~---~~~---------~~~G~~~~~~~D~vi~a~G~~p~~~~  346 (535)
                      ++++.+.+     ++||++ ++..+.++..  ++++.+.   +..         ...|+.+++++|.||+|+|.+|++++
T Consensus       711 ~eEle~Al-----eeGVe~~~~~~p~~I~~--dG~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pntel  783 (1019)
T PRK09853        711 REEYEEAL-----EDGVEFKELLNPESFDA--DGTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVDTEL  783 (1019)
T ss_pred             HHHHHHHH-----HcCCEEEeCCceEEEEc--CCcEEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCcCChhH
Confidence            55544332     469999 9999998864  2333221   100         01244458999999999999999998


Q ss_pred             CCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCCCcHHHHHHHHHHHHHHHhCCC
Q psy14461        347 LNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQ  407 (535)
Q Consensus       347 l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g~~  407 (535)
                      +  +..|++++++|+|.||++++|+.|+|||+|||+ .++.++..|+.||+.||++|++..
T Consensus       784 l--e~~GL~ld~~G~I~VDetlqTs~pgVFAaGD~a-~Gp~tvv~Ai~qGr~AA~nI~~~~  841 (1019)
T PRK09853        784 L--KANGIPLDKKGWPVVDANGETSLTNVYMIGDVQ-RGPSTIVAAIADARRAADAILSRE  841 (1019)
T ss_pred             H--HhcCccccCCCCEEeCCCcccCCCCEEEEeccc-cCchHHHHHHHHHHHHHHHHhhhc
Confidence            7  677888888999999999999999999999999 788899999999999999998744

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=100.00  E-value=2.6e-33  Score=313.56  Aligned_cols=328  Identities=16%  Similarity=0.192  Sum_probs=238.6

Q ss_pred             ccCCCccccccCCCCCCChhHHHHh------------hhcCCcEEEEeCCCchhhHHHH---------------HHHHHh
Q psy14461         29 KTCSPTASSCDLLPSFETPPAYISR------------LSYENRILIFTHAVLREENARA---------------ERYLNA   81 (535)
Q Consensus        29 ~~~~~~~~~~~~~p~~~~l~~~~~~------------~i~~~~v~v~~k~~cp~~~~~~---------------k~~~~~   81 (535)
                      ++..|+..+|   |...+++.|+..            +.+.|+....+.+.||++|..+               |+...+
T Consensus       442 c~~aPC~~~C---P~~~dIp~yi~~i~~g~~~~A~~vi~~~nPlp~icGrVC~h~Ce~~C~R~~~d~pV~I~~Lkr~a~d  518 (1012)
T TIGR03315       442 CYVAPCTTGC---PINQDIPEYIRLVGEKRYLEALEVIYDKNPLPAITGTICDHQCQYKCTRLDYDESVNIREMKKVAAE  518 (1012)
T ss_pred             CCCCccccCC---CCCCcHHHHHHHHHCCCHHHHHHHHHHhCChhhHhhCcCCcchHHHhcCCCCCCCCcccHHHHHHHh
Confidence            3446777788   888889888663            5667888888899999888764               333321


Q ss_pred             c-----C-------CcceEEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccccc-ccccccccccchhhcccccc
Q psy14461         82 R-----G-------DRFAVLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKK-RRLYYPVAMSDLELEQDSTS  148 (535)
Q Consensus        82 ~-----~-------~~~~~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~-~l~~~~~~i~~~~~~~~~~~  148 (535)
                      .     .       ....-.+|+|||+||||+++|..+...+.+|+|||+.+.+++... .+|.+               
T Consensus       519 ~~~~~~~~~~~~~~~~~~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~IP~~---------------  583 (1012)
T TIGR03315       519 KGYDEYKTRWHKPQGKSSAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNIIPEF---------------  583 (1012)
T ss_pred             hHHHhcCccCCCCCCCCCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeeccccc---------------
Confidence            1     0       011235899999999999999999999999999999987643311 11211               


Q ss_pred             cccccccCHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEce-eEEEcceEEEeeCceecC--CCCC
Q psy14461        149 ALNVTIRNWNAATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSN-RSVTGFNFLLAVERRCLP--EPRN  225 (535)
Q Consensus       149 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~-~~~~~d~lViATGs~p~~--~i~G  225 (535)
                           .... +...+           ..+.+...||+++.+..     ..+++.. ....||+||||||+++..  +++|
T Consensus       584 -----rlp~-e~l~~-----------~ie~l~~~GVe~~~g~~-----~d~~ve~l~~~gYDaVIIATGA~~~~~l~I~G  641 (1012)
T TIGR03315       584 -----RISA-ESIQK-----------DIELVKFHGVEFKYGCS-----PDLTVAELKNQGYKYVILAIGAWKHGPLRLEG  641 (1012)
T ss_pred             -----CCCH-HHHHH-----------HHHHHHhcCcEEEEecc-----cceEhhhhhcccccEEEECCCCCCCCCCCcCC
Confidence                 0111 11111           12456677999988742     1233333 456799999999998544  7888


Q ss_pred             --CceechhhHHhc-------cCCCCcEEEECCChHHHHHHHHHHhC-CC-cEEEEEc-C-cCCccCcHHHHHHHHHhhh
Q psy14461        226 --SALISADDLFRL-------GAWPGKTLVLGGSLMAVEIAATLNFL-GV-PVTLVYS-R-RLLKHFDQEMVRILLSSLT  292 (535)
Q Consensus       226 --~~v~~~~~~~~~-------~~~~k~vvViGgG~~g~e~A~~l~~~-g~-~Vtlv~~-~-~~l~~~~~~~~~~~~~~l~  292 (535)
                        +.+++..+++..       ...+++|+|||||++|+|+|..+.+. |. +|+++++ . ..++..++++...+     
T Consensus       642 ~~~~v~~avefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~~~Mpa~~eEl~~al-----  716 (1012)
T TIGR03315       642 GGERVLKSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKRYMPASREELEEAL-----  716 (1012)
T ss_pred             CCcceeeHHHHHHHhhccccccccCCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccCccccccCHHHHHHHH-----
Confidence              467776666542       24579999999999999999999887 75 8999998 4 55666655543332     


Q ss_pred             cCCeEE-cceEEEEEEEeCCCcEEEEEe------------cCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCC
Q psy14461        293 KAGVSI-QCCVIEKVISSFDGMKGVRGF------------HPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKK  359 (535)
Q Consensus       293 ~~gV~i-~~~~v~~i~~~~~~~~~v~~~------------~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~  359 (535)
                      ++||++ ++..+.+++   ++.+.+...            ...+|++.++++|.||+|+|++|+++++  +..+++++++
T Consensus       717 eeGVe~~~~~~p~~I~---~g~l~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~~Pnt~ll--e~~GL~ld~~  791 (1012)
T TIGR03315       717 EDGVDFKELLSPESFE---DGTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQVDTDLL--QKNGIPLDEY  791 (1012)
T ss_pred             HcCCEEEeCCceEEEE---CCeEEEEEEEeecccCCCceeeecCCCeEEEEeCEEEEecCCcCChHHH--HhcCcccCCC
Confidence            469999 888888886   233332210            0014666689999999999999999886  6778988989


Q ss_pred             CceEcCCC-CCcCCCCEEEeCCcCCCCCCcHHHHHHHHHHHHHHHhCCC
Q psy14461        360 SYVVCNEK-DQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQ  407 (535)
Q Consensus       360 G~i~vd~~-~~T~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g~~  407 (535)
                      |+|.||++ ++|+.|+|||+|||+ .+|.++..|+.||+.||.+|++..
T Consensus       792 G~I~VD~~~~~Ts~pgVFAaGD~a-~GP~tVv~AIaqGr~AA~nIl~~~  839 (1012)
T TIGR03315       792 GWPVVNQATGETNITNVFVIGDAN-RGPATIVEAIADGRKAANAILSRE  839 (1012)
T ss_pred             CCEEeCCCCCccCCCCEEEEeCcC-CCccHHHHHHHHHHHHHHHHhccc
Confidence            99999986 899999999999999 788899999999999999999653

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=100.00  E-value=2.7e-33  Score=284.70  Aligned_cols=276  Identities=18%  Similarity=0.142  Sum_probs=217.6

Q ss_pred             EEEEeeCCccHHHHHHHHHhhC--CCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTN--QRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKR  166 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~--~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  166 (535)
                      .+|+|+|+|.+|+.++......  +.+|||||+.++..+.+- ++..   ..+              .++..        
T Consensus         4 ~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~pl-L~ev---a~g--------------~l~~~--------   57 (405)
T COG1252           4 KRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPL-LYEV---ATG--------------TLSES--------   57 (405)
T ss_pred             ceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchh-hhhh---hcC--------------CCChh--------
Confidence            4689999999999999877654  488999999998766531 2211   111              11222        


Q ss_pred             HHHHHHHHHHHHHHhcC-cEEEEeEEEEec--CCEEEEce-eEEEcceEEEeeCceecC-CCCC--Cc---eechhhHHh
Q psy14461        167 FCIRAKNDSMRELKALG-IDIVRTAAAFTN--PHTIKLSN-RSVTGFNFLLAVERRCLP-EPRN--SA---LISADDLFR  236 (535)
Q Consensus       167 ~~~~~~~~~~~~~~~~g-V~~~~g~~~~~~--~~~v~~~~-~~~~~d~lViATGs~p~~-~i~G--~~---v~~~~~~~~  236 (535)
                         ++...++..++..+ |+++.+++..+|  .++|++++ .++.||+||||+|+.+.. .+||  ++   +.+.+|+.+
T Consensus        58 ---~i~~p~~~~~~~~~~v~~~~~~V~~ID~~~k~V~~~~~~~i~YD~LVvalGs~~~~fgi~G~~E~a~~lks~edA~~  134 (405)
T COG1252          58 ---EIAIPLRALLRKSGNVQFVQGEVTDIDRDAKKVTLADLGEISYDYLVVALGSETNYFGIPGAAEYAFGLKTLEDALR  134 (405)
T ss_pred             ---heeccHHHHhcccCceEEEEEEEEEEcccCCEEEeCCCccccccEEEEecCCcCCcCCCCCHHHhCCCCCCHHHHHH
Confidence               22233446666454 999999988865  67899887 789999999999999999 9999  33   456666654


Q ss_pred             cc-----------CCC-----CcEEEECCChHHHHHHHHHHhCC-------------CcEEEEEc-CcCCccCcHHHHHH
Q psy14461        237 LG-----------AWP-----GKTLVLGGSLMAVEIAATLNFLG-------------VPVTLVYS-RRLLKHFDQEMVRI  286 (535)
Q Consensus       237 ~~-----------~~~-----k~vvViGgG~~g~e~A~~l~~~g-------------~~Vtlv~~-~~~l~~~~~~~~~~  286 (535)
                      ++           ..+     ..++|+|||++|+|+|..|+.+-             .+|+++++ ++++|.++++++++
T Consensus       135 ir~~l~~~fe~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~~~~~l~~~  214 (405)
T COG1252         135 LRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPMFPPKLSKY  214 (405)
T ss_pred             HHHHHHHHHHHhhccccccceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhccCCCHHHHHH
Confidence            31           112     26999999999999999886541             38999999 99999999999999


Q ss_pred             HHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccc-cCeeecCCCceEc
Q psy14461        287 LLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHH-IGVDIKKKSYVVC  364 (535)
Q Consensus       287 ~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~-~gl~~~~~G~i~v  364 (535)
                      .++.|++.||++ +++.|++++++     .|++.   +|++ ++++|.++|++|.+++...   ++ .+++.|.+|++.|
T Consensus       215 a~~~L~~~GV~v~l~~~Vt~v~~~-----~v~~~---~g~~-~I~~~tvvWaaGv~a~~~~---~~l~~~e~dr~Grl~V  282 (405)
T COG1252         215 AERALEKLGVEVLLGTPVTEVTPD-----GVTLK---DGEE-EIPADTVVWAAGVRASPLL---KDLSGLETDRRGRLVV  282 (405)
T ss_pred             HHHHHHHCCCEEEcCCceEEECCC-----cEEEc---cCCe-eEecCEEEEcCCCcCChhh---hhcChhhhccCCCEEe
Confidence            999999999999 99999999864     25553   5552 5999999999999998754   44 4688888899999


Q ss_pred             CCCCCc-CCCCEEEeCCcCC--C---CCCcHHHHHHHHHHHHHHHhC
Q psy14461        365 NEKDQT-SVGNIFAVGGIVH--G---KPNNASMAAISARLIIERLYG  405 (535)
Q Consensus       365 d~~~~T-~~~~IyA~GD~~~--~---~~~~~~~A~~~g~~aa~~i~g  405 (535)
                      |+++++ +.|+|||+|||+.  .   -|+.+..|++||+.+|+||..
T Consensus       283 ~~~L~~~~~~~IFa~GD~A~~~~~~p~P~tAQ~A~Qqg~~~a~ni~~  329 (405)
T COG1252         283 NPTLQVPGHPDIFAAGDCAAVIDPRPVPPTAQAAHQQGEYAAKNIKA  329 (405)
T ss_pred             CCCcccCCCCCeEEEeccccCCCCCCCCChhHHHHHHHHHHHHHHHH
Confidence            999986 8999999999996  2   267888999999999999973

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=100.00  E-value=3.5e-33  Score=300.91  Aligned_cols=281  Identities=15%  Similarity=0.113  Sum_probs=202.1

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHH
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRF  167 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  167 (535)
                      .++|+|||+||+|+++|+.+...+.+|+|+++.  +++.......    +.+    +.+     .....+.++..+    
T Consensus       212 ~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~--~GG~~~~~~~----~~~----~~~-----~~~~~~~~l~~~----  272 (515)
T TIGR03140       212 PYDVLVVGGGPAGAAAAIYAARKGLRTAMVAER--IGGQVKDTVG----IEN----LIS-----VPYTTGSQLAAN----  272 (515)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCccccCcC----ccc----ccc-----cCCCCHHHHHHH----
Confidence            378999999999999999999999999999752  3222110000    110    000     112234444333    


Q ss_pred             HHHHHHHHHHHHHhcCcEEEEeE-EEEe--cC--CEEEEce-eEEEcceEEEeeCceecC-CCCC-C-----ceechhhH
Q psy14461        168 CIRAKNDSMRELKALGIDIVRTA-AAFT--NP--HTIKLSN-RSVTGFNFLLAVERRCLP-EPRN-S-----ALISADDL  234 (535)
Q Consensus       168 ~~~~~~~~~~~~~~~gV~~~~g~-~~~~--~~--~~v~~~~-~~~~~d~lViATGs~p~~-~i~G-~-----~v~~~~~~  234 (535)
                             +.+.++..||+++.+. +..+  +.  ..+.+.+ ..+.||+||+|||++|+. ++|| .     .++.....
T Consensus       273 -------l~~~l~~~gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~~~~~ipG~~~~~~~~v~~~~~~  345 (515)
T TIGR03140       273 -------LEEHIKQYPIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARWRKLGVPGEKEYIGKGVAYCPHC  345 (515)
T ss_pred             -------HHHHHHHhCCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCcCCCCCCCHHHcCCCeEEEeecc
Confidence                   2355667789988753 4333  22  2344433 579999999999999988 8888 1     12211111


Q ss_pred             HhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhc-CCeEE-cceEEEEEEEeCC
Q psy14461        235 FRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTK-AGVSI-QCCVIEKVISSFD  311 (535)
Q Consensus       235 ~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~-~gV~i-~~~~v~~i~~~~~  311 (535)
                      ......+++|+|||||++|+|+|..|++.+.+||++++ +.+..      ...+.+.+++ +||++ +++.++++..+ +
T Consensus       346 ~~~~~~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~~------~~~l~~~l~~~~gV~i~~~~~v~~i~~~-~  418 (515)
T TIGR03140       346 DGPFFKGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKA------DKVLQDKLKSLPNVDILTSAQTTEIVGD-G  418 (515)
T ss_pred             ChhhcCCCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCCh------hHHHHHHHhcCCCCEEEECCeeEEEEcC-C
Confidence            11112468999999999999999999999999999998 76542      2345566665 69999 99999999865 3


Q ss_pred             CcE-EEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCC-CcH
Q psy14461        312 GMK-GVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKP-NNA  389 (535)
Q Consensus       312 ~~~-~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~-~~~  389 (535)
                      +++ .|++.+..+|+++++++|.|++++|++||++++  +.. ++++++|+|.||+++||++|+|||+|||+ +.+ .++
T Consensus       419 ~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~Pn~~~l--~~~-~~~~~~G~I~vd~~~~Ts~p~IyAaGDv~-~~~~~~~  494 (515)
T TIGR03140       419 DKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVPNTEWL--KDA-VELNRRGEIVIDERGRTSVPGIFAAGDVT-TVPYKQI  494 (515)
T ss_pred             CEEEEEEEEECCCCcEEEEEcCEEEEEeCCcCCchHH--hhh-cccCCCCeEEECCCCCCCCCCEEEccccc-CCccceE
Confidence            444 366654334555689999999999999999987  444 77888899999999999999999999999 543 567


Q ss_pred             HHHHHHHHHHHHHHhC
Q psy14461        390 SMAAISARLIIERLYG  405 (535)
Q Consensus       390 ~~A~~~g~~aa~~i~g  405 (535)
                      ..|+.+|..||.+|..
T Consensus       495 ~~A~~~G~~Aa~~i~~  510 (515)
T TIGR03140       495 IIAMGEGAKAALSAFD  510 (515)
T ss_pred             EEEEccHHHHHHHHHH
Confidence            8899999999999875

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=100.00  E-value=2e-32  Score=295.37  Aligned_cols=282  Identities=15%  Similarity=0.086  Sum_probs=204.9

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHH
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRF  167 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  167 (535)
                      .++++|||+|++|+.+|+.....+.+|+||++.  +++.....+ .   +.    ++++     ....++.++.++.   
T Consensus       211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~GG~~~~~~-~---~~----~~~~-----~~~~~~~~l~~~l---  272 (517)
T PRK15317        211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FGGQVLDTM-G---IE----NFIS-----VPETEGPKLAAAL---  272 (517)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCeeeccC-c---cc----ccCC-----CCCCCHHHHHHHH---
Confidence            368999999999999999999999999999864  222211000 0   11    0111     1123455544433   


Q ss_pred             HHHHHHHHHHHHHhcCcEEEEe-EEEEec----CCEEEEce-eEEEcceEEEeeCceecC-CCCC-C-----ceechhhH
Q psy14461        168 CIRAKNDSMRELKALGIDIVRT-AAAFTN----PHTIKLSN-RSVTGFNFLLAVERRCLP-EPRN-S-----ALISADDL  234 (535)
Q Consensus       168 ~~~~~~~~~~~~~~~gV~~~~g-~~~~~~----~~~v~~~~-~~~~~d~lViATGs~p~~-~i~G-~-----~v~~~~~~  234 (535)
                              ...+++.+++++.+ ++..++    .+.+.+.+ .++.||+||+|||++|+. ++|| .     .++.....
T Consensus       273 --------~~~~~~~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~r~~~ipG~~~~~~~~v~~~~~~  344 (517)
T PRK15317        273 --------EEHVKEYDVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGARWRNMNVPGEDEYRNKGVAYCPHC  344 (517)
T ss_pred             --------HHHHHHCCCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCcCCCCCCCHHHhcCceEEEeecc
Confidence                    35667778988765 344432    23455543 579999999999999988 8888 1     12211111


Q ss_pred             HhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhc-CCeEE-cceEEEEEEEeCC
Q psy14461        235 FRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTK-AGVSI-QCCVIEKVISSFD  311 (535)
Q Consensus       235 ~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~-~gV~i-~~~~v~~i~~~~~  311 (535)
                      ......+++|+|||||++|+|+|..|+..+.+||++++ +.+..  +    ..+.+.+.+ .||++ +++.++++..+ +
T Consensus       345 ~~~~~~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~--~----~~l~~~l~~~~gI~i~~~~~v~~i~~~-~  417 (517)
T PRK15317        345 DGPLFKGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKA--D----QVLQDKLRSLPNVTIITNAQTTEVTGD-G  417 (517)
T ss_pred             CchhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccccc--c----HHHHHHHhcCCCcEEEECcEEEEEEcC-C
Confidence            11112468999999999999999999999999999998 66543  2    334555554 69999 99999999875 3


Q ss_pred             CcE-EEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCCCcHH
Q psy14461        312 GMK-GVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNAS  390 (535)
Q Consensus       312 ~~~-~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~~~~~  390 (535)
                      +.+ .+++.+..+|+++++++|.+++++|++||++++  +.. ++++++|+|.||+++||++|+|||+|||+....+++.
T Consensus       418 g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~p~~~~l--~~~-v~~~~~g~i~vd~~l~Ts~p~IyAaGDv~~~~~k~~~  494 (517)
T PRK15317        418 DKVTGLTYKDRTTGEEHHLELEGVFVQIGLVPNTEWL--KGT-VELNRRGEIIVDARGATSVPGVFAAGDCTTVPYKQII  494 (517)
T ss_pred             CcEEEEEEEECCCCcEEEEEcCEEEEeECCccCchHH--hhh-eeeCCCCcEEECcCCCCCCCCEEECccccCCCCCEEE
Confidence            444 366654345666689999999999999999987  444 7888889999999999999999999999933457788


Q ss_pred             HHHHHHHHHHHHHhC
Q psy14461        391 MAAISARLIIERLYG  405 (535)
Q Consensus       391 ~A~~~g~~aa~~i~g  405 (535)
                      .|+.+|..||.++..
T Consensus       495 ~A~~eG~~Aa~~~~~  509 (517)
T PRK15317        495 IAMGEGAKAALSAFD  509 (517)
T ss_pred             EhhhhHHHHHHHHHH
Confidence            999999999999874

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=100.00  E-value=7.9e-33  Score=294.52  Aligned_cols=322  Identities=17%  Similarity=0.151  Sum_probs=230.5

Q ss_pred             CCCCChhHHHHh------------hhcCCcEEEEeCCCchhh--HHHH---------------HHHHHh----cC-----
Q psy14461         42 PSFETPPAYISR------------LSYENRILIFTHAVLREE--NARA---------------ERYLNA----RG-----   83 (535)
Q Consensus        42 p~~~~l~~~~~~------------~i~~~~v~v~~k~~cp~~--~~~~---------------k~~~~~----~~-----   83 (535)
                      |...+++.|+..            +.+.||+.....+.||+.  |...               ++....    .+     
T Consensus        55 p~~~~~~~~~~~~~~~~~~~a~~~~~~~~p~~~~~g~vc~~~~~C~~~C~~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~  134 (457)
T PRK11749         55 PVSIDIPEFIRLIAEGNLKGAAETILETNPLPAVCGRVCPQERLCEGACVRGKKGEPVAIGRLERYITDWAMETGWVLFK  134 (457)
T ss_pred             CCcCCHHHHHHHHHCCCHHHHHHHHHHhCCchhhhcCcCCCccCHHHHhcCCCCCCCcchHHHHHHHHHHHHhcCCCCCC
Confidence            777788877654            456688888889999976  7552               121111    11     


Q ss_pred             -CcceEEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccc-ccccccccccccchhhcccccccccccccCHHHHH
Q psy14461         84 -DRFAVLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFR-KKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAAT  161 (535)
Q Consensus        84 -~~~~~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~-~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~  161 (535)
                       ......+|+|||+|++|+.+|..+...+.+|+|||+.+.++.. ..++|.+                    .. ..++.
T Consensus       135 ~~~~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~gip~~--------------------~~-~~~~~  193 (457)
T PRK11749        135 RAPKTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYGIPEF--------------------RL-PKDIV  193 (457)
T ss_pred             CCccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeeccCCCc--------------------cC-CHHHH
Confidence             1122368999999999999999888889999999998865321 1111111                    00 11122


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEceeEEEcceEEEeeCce-ecC-CCCC---CceechhhHHh
Q psy14461        162 KLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAVERR-CLP-EPRN---SALISADDLFR  236 (535)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~~~~~~d~lViATGs~-p~~-~i~G---~~v~~~~~~~~  236 (535)
                      .+           ....++..||+++.++..   .+.+++.+..+.||+||||||++ |+. ++||   .++++..+++.
T Consensus       194 ~~-----------~~~~l~~~gv~~~~~~~v---~~~v~~~~~~~~~d~vvlAtGa~~~~~~~i~G~~~~gv~~~~~~l~  259 (457)
T PRK11749        194 DR-----------EVERLLKLGVEIRTNTEV---GRDITLDELRAGYDAVFIGTGAGLPRFLGIPGENLGGVYSAVDFLT  259 (457)
T ss_pred             HH-----------HHHHHHHcCCEEEeCCEE---CCccCHHHHHhhCCEEEEccCCCCCCCCCCCCccCCCcEEHHHHHH
Confidence            21           224567789999888753   23344433347899999999996 666 8888   45777666654


Q ss_pred             cc---------CCCCcEEEECCChHHHHHHHHHHhCCC-cEEEEEc-Cc-CCccCcHHHHHHHHHhhhcCCeEE-cceEE
Q psy14461        237 LG---------AWPGKTLVLGGSLMAVEIAATLNFLGV-PVTLVYS-RR-LLKHFDQEMVRILLSSLTKAGVSI-QCCVI  303 (535)
Q Consensus       237 ~~---------~~~k~vvViGgG~~g~e~A~~l~~~g~-~Vtlv~~-~~-~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v  303 (535)
                      ..         ..+++|+|||||++|+|+|..|.+.|. +||++++ +. .++....     ..+.++++||++ +++.+
T Consensus       260 ~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~~~~-----~~~~~~~~GV~i~~~~~v  334 (457)
T PRK11749        260 RVNQAVADYDLPVGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPASEE-----EVEHAKEEGVEFEWLAAP  334 (457)
T ss_pred             HHhhccccccCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHH-----HHHHHHHCCCEEEecCCc
Confidence            21         247899999999999999999999998 8999998 44 3444332     235567889999 99999


Q ss_pred             EEEEEeCCCcEEEEEecC--------------CCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCC-CC
Q psy14461        304 EKVISSFDGMKGVRGFHP--------------ESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNE-KD  368 (535)
Q Consensus       304 ~~i~~~~~~~~~v~~~~~--------------~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~-~~  368 (535)
                      .++..++++...|++...              .+|+++++++|.||+|+|++|+..++ ....+++++++|+|.||+ ++
T Consensus       335 ~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~~l~-~~~~gl~~~~~g~i~vd~~~~  413 (457)
T PRK11749        335 VEILGDEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNPLIL-STTPGLELNRWGTIIADDETG  413 (457)
T ss_pred             EEEEecCCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCCchhh-ccccCccCCCCCCEEeCCCCC
Confidence            999865222122333210              13445589999999999999997765 235578888899999998 88


Q ss_pred             CcCCCCEEEeCCcCCCCCCcHHHHHHHHHHHHHHHhC
Q psy14461        369 QTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYG  405 (535)
Q Consensus       369 ~T~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g  405 (535)
                      +|+.|+|||+|||+ .++.++..|+.||+.||.+|..
T Consensus       414 ~Ts~~~VfA~GD~~-~~~~~~~~A~~~G~~aA~~I~~  449 (457)
T PRK11749        414 RTSLPGVFAGGDIV-TGAATVVWAVGDGKDAAEAIHE  449 (457)
T ss_pred             ccCCCCEEEeCCcC-CCchHHHHHHHHHHHHHHHHHH
Confidence            99999999999999 7778899999999999999864

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=100.00  E-value=2.2e-32  Score=283.16  Aligned_cols=274  Identities=18%  Similarity=0.165  Sum_probs=210.7

Q ss_pred             EEEeeCCccHHHHHHHHHh---hCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHH
Q psy14461         90 YLDRIGDEGILLEEELKRQ---TNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKR  166 (535)
Q Consensus        90 ~v~iiG~G~aG~~~al~~~---~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  166 (535)
                      +|+|||+|.+|+.+|.+..   ....+|+|||++++..|.+. +|++   +.+              ..+..++      
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~-~~~~---~~g--------------~~~~~~~------   56 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGM-LPGM---IAG--------------HYSLDEI------   56 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccch-hhHH---Hhe--------------eCCHHHh------
Confidence            4799999999999887653   45789999999998777643 4443   222              1122222      


Q ss_pred             HHHHHHHHHHHHHHhcCcEEEEeEEEEec--CCEEEEce-eEEEcceEEEeeCceecC-CCCC--Ccee---chhhHHh-
Q psy14461        167 FCIRAKNDSMRELKALGIDIVRTAAAFTN--PHTIKLSN-RSVTGFNFLLAVERRCLP-EPRN--SALI---SADDLFR-  236 (535)
Q Consensus       167 ~~~~~~~~~~~~~~~~gV~~~~g~~~~~~--~~~v~~~~-~~~~~d~lViATGs~p~~-~i~G--~~v~---~~~~~~~-  236 (535)
                           .....++++..||+++.+++..++  .++|.+.+ .++.||+||||||++|.. ++||  ++++   +.+++.. 
T Consensus        57 -----~~~~~~~~~~~gv~~~~~~v~~id~~~~~V~~~~g~~~~yD~LviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~  131 (364)
T TIGR03169        57 -----RIDLRRLARQAGARFVIAEATGIDPDRRKVLLANRPPLSYDVLSLDVGSTTPLSGVEGAADLAVPVKPIENFLAR  131 (364)
T ss_pred             -----cccHHHHHHhcCCEEEEEEEEEEecccCEEEECCCCcccccEEEEccCCCCCCCCCCcccccccccCCHHHHHHH
Confidence                 222335667789999999988765  56777765 679999999999999998 8998  4433   3233322 


Q ss_pred             ---c------cCCCCcEEEECCChHHHHHHHHHHh----CC--CcEEEEEcCcCCccCcHHHHHHHHHhhhcCCeEE-cc
Q psy14461        237 ---L------GAWPGKTLVLGGSLMAVEIAATLNF----LG--VPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVSI-QC  300 (535)
Q Consensus       237 ---~------~~~~k~vvViGgG~~g~e~A~~l~~----~g--~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~i-~~  300 (535)
                         +      ...+++++|||+|++|+|+|..|++    +|  .+|+++..+.+++.+++++.+.+++.|++.||++ .+
T Consensus       132 ~~~~~~~~~~~~~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~  211 (364)
T TIGR03169       132 WEALLESADAPPGTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLIAGASLLPGFPAKVRRLVLRLLARRGIEVHEG  211 (364)
T ss_pred             HHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEEeCCcccccCCHHHHHHHHHHHHHCCCEEEeC
Confidence               1      1235799999999999999999875    34  5899993377888889999999999999999999 99


Q ss_pred             eEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCc-CCCCEEEeC
Q psy14461        301 CVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQT-SVGNIFAVG  379 (535)
Q Consensus       301 ~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T-~~~~IyA~G  379 (535)
                      +.+++++.   +  .+.+.   +|+  ++++|.+++|+|.+|+.. +  ...+++++++|+|.||+++|| +.|+|||+|
T Consensus       212 ~~v~~i~~---~--~v~~~---~g~--~i~~D~vi~a~G~~p~~~-l--~~~gl~~~~~g~i~vd~~l~~~~~~~Iya~G  278 (364)
T TIGR03169       212 APVTRGPD---G--ALILA---DGR--TLPADAILWATGARAPPW-L--AESGLPLDEDGFLRVDPTLQSLSHPHVFAAG  278 (364)
T ss_pred             CeeEEEcC---C--eEEeC---CCC--EEecCEEEEccCCChhhH-H--HHcCCCcCCCCeEEECCccccCCCCCEEEee
Confidence            99999863   2  35553   676  899999999999999863 3  456777888899999999998 999999999


Q ss_pred             CcCC----CCCCcHHHHHHHHHHHHHHHhC
Q psy14461        380 GIVH----GKPNNASMAAISARLIIERLYG  405 (535)
Q Consensus       380 D~~~----~~~~~~~~A~~~g~~aa~~i~g  405 (535)
                      ||+.    ..++....|++||+++|+||..
T Consensus       279 D~~~~~~~~~~~~~~~A~~~g~~~a~ni~~  308 (364)
T TIGR03169       279 DCAVITDAPRPKAGVYAVRQAPILAANLRA  308 (364)
T ss_pred             eeeecCCCCCCCchHHHHHhHHHHHHHHHH
Confidence            9984    1245677899999999999963

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=100.00  E-value=4.1e-32  Score=273.18  Aligned_cols=282  Identities=15%  Similarity=0.102  Sum_probs=201.6

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRFC  168 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  168 (535)
                      ++++|||+|++|+.+|..+...+.+|+|||+++ .++... ..       .....+|++.    ......++..      
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~-~~-------~~~~~~~~~~----~~~~~~~~~~------   61 (300)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLT-TT-------TEVENYPGFP----EGISGPELME------   61 (300)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCccee-ec-------ccccccCCCC----CCCChHHHHH------
Confidence            368999999999999998888899999999886 211100 00       0000011110    0011122222      


Q ss_pred             HHHHHHHHHHHHhcCcEEEEeEEEEecC--C--EEEEce-eEEEcceEEEeeCceecC-CCCC-C-----ceechhhHHh
Q psy14461        169 IRAKNDSMRELKALGIDIVRTAAAFTNP--H--TIKLSN-RSVTGFNFLLAVERRCLP-EPRN-S-----ALISADDLFR  236 (535)
Q Consensus       169 ~~~~~~~~~~~~~~gV~~~~g~~~~~~~--~--~v~~~~-~~~~~d~lViATGs~p~~-~i~G-~-----~v~~~~~~~~  236 (535)
                           .+...+++.+++++.+++..++.  +  .+...+ .++.||+||+|||++|.. ++|| .     .+........
T Consensus        62 -----~l~~~~~~~gv~~~~~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~  136 (300)
T TIGR01292        62 -----KMKEQAVKFGAEIIYEEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASARKLGIPGEDEFLGRGVSYCATCDG  136 (300)
T ss_pred             -----HHHHHHHHcCCeEEEEEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCcccCCCCChhhcCCccEEEeeecCh
Confidence                 23355677899998877655432  2  344443 689999999999999988 8888 2     1211111111


Q ss_pred             ccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcC-CeEE-cceEEEEEEEeCCCc
Q psy14461        237 LGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKA-GVSI-QCCVIEKVISSFDGM  313 (535)
Q Consensus       237 ~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~-gV~i-~~~~v~~i~~~~~~~  313 (535)
                      ....+++|+|||+|++|+|+|..|++.+.+|+++++ +.+..  .    ..+.+.++++ ||++ +++.+++++.+ +..
T Consensus       137 ~~~~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~~--~----~~~~~~l~~~~gv~~~~~~~v~~i~~~-~~~  209 (300)
T TIGR01292       137 PFFKNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFRA--E----KILLDRLRKNPNIEFLWNSTVKEIVGD-NKV  209 (300)
T ss_pred             hhcCCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccCc--C----HHHHHHHHhCCCeEEEeccEEEEEEcc-CcE
Confidence            112468999999999999999999999999999999 65432  2    3345556666 9999 99999999864 222


Q ss_pred             EEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCC-CCCcHHHH
Q psy14461        314 KGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHG-KPNNASMA  392 (535)
Q Consensus       314 ~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~-~~~~~~~A  392 (535)
                      ..+++.+..+|+.+++++|.+++|+|++|+.+++  +.. ++++++|++.||++++|+.|+|||+|||+ + .++.+..|
T Consensus       210 ~~v~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~l--~~~-~~~~~~g~i~v~~~~~t~~~~vya~GD~~-~~~~~~~~~A  285 (300)
T TIGR01292       210 EGVKIKNTVTGEEEELKVDGVFIAIGHEPNTELL--KGL-LELDEGGYIVTDEGMRTSVPGVFAAGDVR-DKGYRQAVTA  285 (300)
T ss_pred             EEEEEEecCCCceEEEEccEEEEeeCCCCChHHH--HHh-heecCCCcEEECCCCccCCCCEEEeeccc-Ccchhhhhhh
Confidence            3455543234665689999999999999999876  444 67788899999999999999999999999 6 57888999


Q ss_pred             HHHHHHHHHHHhC
Q psy14461        393 AISARLIIERLYG  405 (535)
Q Consensus       393 ~~~g~~aa~~i~g  405 (535)
                      +.||+.||.+|..
T Consensus       286 ~~~g~~aa~~i~~  298 (300)
T TIGR01292       286 AGDGCIAALSAER  298 (300)
T ss_pred             hhhHHHHHHHHHh
Confidence            9999999999863

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=100.00  E-value=1.9e-32  Score=307.60  Aligned_cols=323  Identities=16%  Similarity=0.148  Sum_probs=233.2

Q ss_pred             CCCCChhHHHHh------------hhcCCcEEEEeCCCchh--hHHHH----------------HHHHH----hcC----
Q psy14461         42 PSFETPPAYISR------------LSYENRILIFTHAVLRE--ENARA----------------ERYLN----ARG----   83 (535)
Q Consensus        42 p~~~~l~~~~~~------------~i~~~~v~v~~k~~cp~--~~~~~----------------k~~~~----~~~----   83 (535)
                      |...+++.|+..            +.+.|++..+..+.||+  .|..+                ++...    ..+    
T Consensus       344 p~~~~i~~~~~~~~~g~~~~a~~~~~~~~p~p~~~grvC~~~~~Ce~~c~~~~~~~~~v~i~~l~r~~~d~~~~~~~~~~  423 (752)
T PRK12778        344 PVGIDIPRFIKNIERGNFLEAAKILKETSALPAVCGRVCPQEKQCESKCIHGKMGEEAVAIGYLERFVADYERESGNISV  423 (752)
T ss_pred             cCCCCHHHHHHHHHCCCHHHHHHHHHhhCCchhHhcCcCCCcCchHHhcccCCCCCCCcCHHHHHHHHHHHHHHhCCCCC
Confidence            777778777553            56778988888999994  46643                11111    111    


Q ss_pred             ---CcceEEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHH
Q psy14461         84 ---DRFAVLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAA  160 (535)
Q Consensus        84 ---~~~~~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l  160 (535)
                         ....-.+|+|||+||||+++|..+...+.+|+|||+.+.+++    +..|  +++..             ... .++
T Consensus       424 ~~~~~~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG----~l~~--gip~~-------------rlp-~~~  483 (752)
T PRK12778        424 PEVAEKNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGG----VLKY--GIPEF-------------RLP-KKI  483 (752)
T ss_pred             CCCCCCCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCC----eeee--cCCCC-------------CCC-HHH
Confidence               011235899999999999999999889999999999765432    2211  12210             011 112


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEce-eEEEcceEEEeeCc-eecC-CCCC---CceechhhH
Q psy14461        161 TKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSN-RSVTGFNFLLAVER-RCLP-EPRN---SALISADDL  234 (535)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~-~~~~~d~lViATGs-~p~~-~i~G---~~v~~~~~~  234 (535)
                      ..+           ..+.+++.||+++.++..   .+++++++ ....||+||||||+ .|+. ++||   ++++++.++
T Consensus       484 ~~~-----------~~~~l~~~gv~~~~~~~v---~~~v~~~~l~~~~ydavvlAtGa~~~~~l~ipG~~~~gV~~~~~~  549 (752)
T PRK12778        484 VDV-----------EIENLKKLGVKFETDVIV---GKTITIEELEEEGFKGIFIASGAGLPNFMNIPGENSNGVMSSNEY  549 (752)
T ss_pred             HHH-----------HHHHHHHCCCEEECCCEE---CCcCCHHHHhhcCCCEEEEeCCCCCCCCCCCCCCCCCCcEEHHHH
Confidence            211           124566789999887642   34555554 45679999999999 5887 8999   578888887


Q ss_pred             Hhcc--------------CCCCcEEEECCChHHHHHHHHHHhCCCc-EEEEEc-Cc-CCccCcHHHHHHHHHhhhcCCeE
Q psy14461        235 FRLG--------------AWPGKTLVLGGSLMAVEIAATLNFLGVP-VTLVYS-RR-LLKHFDQEMVRILLSSLTKAGVS  297 (535)
Q Consensus       235 ~~~~--------------~~~k~vvViGgG~~g~e~A~~l~~~g~~-Vtlv~~-~~-~l~~~~~~~~~~~~~~l~~~gV~  297 (535)
                      +...              ..+++|+|||||++|+|+|..+.++|.+ ||++++ +. .++....++     +.++++||+
T Consensus       550 l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~~~~e~-----~~~~~~GV~  624 (752)
T PRK12778        550 LTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEEMPARLEEV-----KHAKEEGIE  624 (752)
T ss_pred             HHHHhhcccccccccCcccCCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHH-----HHHHHcCCE
Confidence            6421              2358999999999999999999999997 999998 43 344433332     346678999


Q ss_pred             E-cceEEEEEEEeCCCcE-EEEEec------C---------CCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCC
Q psy14461        298 I-QCCVIEKVISSFDGMK-GVRGFH------P---------ESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKS  360 (535)
Q Consensus       298 i-~~~~v~~i~~~~~~~~-~v~~~~------~---------~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G  360 (535)
                      + +++.+.++..++++.+ .|++..      .         .+|+++++++|.||+|+|++|++.++. ...+++++++|
T Consensus       625 i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~~l~~-~~~gl~~~~~G  703 (752)
T PRK12778        625 FLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNPLVPS-SIPGLELNRKG  703 (752)
T ss_pred             EEecCcceEEEECCCCEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCCCCccccc-cccCceECCCC
Confidence            9 9999999976534443 233321      0         124456799999999999999987641 22478888899


Q ss_pred             ceEcCCCCCcCCCCEEEeCCcCCCCCCcHHHHHHHHHHHHHHHhC
Q psy14461        361 YVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYG  405 (535)
Q Consensus       361 ~i~vd~~~~T~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g  405 (535)
                      +|.||++++|+.|+|||+|||+ .++.++..|+.+|+.||.+|..
T Consensus       704 ~i~vd~~~~Ts~~gVfA~GD~~-~g~~~vv~Av~~G~~AA~~I~~  747 (752)
T PRK12778        704 TIVVDEEMQSSIPGIYAGGDIV-RGGATVILAMGDGKRAAAAIDE  747 (752)
T ss_pred             CEEeCCCCCCCCCCEEEeCCcc-CCcHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999 7788899999999999999964

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=100.00  E-value=1.3e-32  Score=313.83  Aligned_cols=328  Identities=14%  Similarity=0.089  Sum_probs=235.8

Q ss_pred             CCccccccCCCCCCChhHHHH------------hhhcCCcEEEEeCCCchh--hHHHH---------------HHHHHh-
Q psy14461         32 SPTASSCDLLPSFETPPAYIS------------RLSYENRILIFTHAVLRE--ENARA---------------ERYLNA-   81 (535)
Q Consensus        32 ~~~~~~~~~~p~~~~l~~~~~------------~~i~~~~v~v~~k~~cp~--~~~~~---------------k~~~~~-   81 (535)
                      .++..+|   |.-.+++.|+.            .+.+.|++.-+..+.||+  .|..+               ++.+.+ 
T Consensus       339 ~~C~~~C---P~~~dip~~~~~i~~g~~~~A~~~i~~~np~p~~~grvCp~~~~Ce~~C~~~~~~~pv~I~~ler~~~d~  415 (1006)
T PRK12775        339 PTCIAGC---PVQIDIPVFIRHVVVRDFDGALEVIYEASIFPSICGRVCPQETQCEAQCIIAKKHESVGIGRLERFVGDN  415 (1006)
T ss_pred             ccccCCC---CCCCCHHHHHHHHHCCCHHHHHHHHHHhCChHHHhcCcCCCCCCHHHhCcCCCCCCCeeecHHHHHHHHH
Confidence            3444567   77777877755            356778999889999995  57764               333221 


Q ss_pred             ---cCCc-----ceEEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccc-ccccccccccccchhhcccccccccc
Q psy14461         82 ---RGDR-----FAVLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFR-KKRRLYYPVAMSDLELEQDSTSALNV  152 (535)
Q Consensus        82 ---~~~~-----~~~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~-~~~l~~~~~~i~~~~~~~~~~~~~~~  152 (535)
                         .+.+     ..-.+|+|||+||||+++|..+...+.+|+|||+.+.+++. ..++|.+.                  
T Consensus       416 ~~~~~~~~~~~~~~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~gip~~r------------------  477 (1006)
T PRK12775        416 ARAKPVKPPRFSKKLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYGIPSFR------------------  477 (1006)
T ss_pred             HHHcCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeeccCCccC------------------
Confidence               1110     11257999999999999999999999999999998866432 22333320                  


Q ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEcee--EEEcceEEEeeCce-ecC-CCCC---
Q psy14461        153 TIRNWNAATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSNR--SVTGFNFLLAVERR-CLP-EPRN---  225 (535)
Q Consensus       153 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~~--~~~~d~lViATGs~-p~~-~i~G---  225 (535)
                         ...++..+           ..+.++..||++..+++.   ++++++.+.  ...||+||||||+. |+. +|||   
T Consensus       478 ---l~~e~~~~-----------~~~~l~~~Gv~~~~~~~v---g~~~~~~~l~~~~~yDaViIATGa~~pr~l~IpG~~l  540 (1006)
T PRK12775        478 ---LPRDIIDR-----------EVQRLVDIGVKIETNKVI---GKTFTVPQLMNDKGFDAVFLGVGAGAPTFLGIPGEFA  540 (1006)
T ss_pred             ---CCHHHHHH-----------HHHHHHHCCCEEEeCCcc---CCccCHHHHhhccCCCEEEEecCCCCCCCCCCCCcCC
Confidence               01122222           225577789999888642   334444331  35799999999995 777 9999   


Q ss_pred             CceechhhHHhcc---------------CCCCcEEEECCChHHHHHHHHHHhCCC-cEEEEEc--CcCCccCcHHHHHHH
Q psy14461        226 SALISADDLFRLG---------------AWPGKTLVLGGSLMAVEIAATLNFLGV-PVTLVYS--RRLLKHFDQEMVRIL  287 (535)
Q Consensus       226 ~~v~~~~~~~~~~---------------~~~k~vvViGgG~~g~e~A~~l~~~g~-~Vtlv~~--~~~l~~~~~~~~~~~  287 (535)
                      .++++..+++...               ..+++|+|||||++|+|+|..+.++|. +|+++++  ...++....++    
T Consensus       541 ~gV~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~~~em~a~~~e~----  616 (1006)
T PRK12775        541 GQVYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRSEAEAPARIEEI----  616 (1006)
T ss_pred             CCcEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecCcccCCCCHHHH----
Confidence            6788888776421               246899999999999999999999997 5888887  33334332222    


Q ss_pred             HHhhhcCCeEE-cceEEEEEEEeCCCcEE-EEEec------CC--------CCCceEEEcCEEEEccCCCCCCCCCCccc
Q psy14461        288 LSSLTKAGVSI-QCCVIEKVISSFDGMKG-VRGFH------PE--------SKEPFADVFKTVVNAMEKKFDFAALNLHH  351 (535)
Q Consensus       288 ~~~l~~~gV~i-~~~~v~~i~~~~~~~~~-v~~~~------~~--------~G~~~~~~~D~vi~a~G~~p~~~~l~l~~  351 (535)
                       +.+++.||++ +++.+++|..+++++++ |++..      ..        +|+++++++|.||+|+|+.||+.++. ..
T Consensus       617 -~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~-~~  694 (1006)
T PRK12775        617 -RHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTKANPIITQ-ST  694 (1006)
T ss_pred             -HHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcCCChhhhh-cc
Confidence             3466789999 99999999764345442 33321      01        24445799999999999999987652 23


Q ss_pred             cCeeecCCCceEcCC-----CCCcCCCCEEEeCCcCCCCCCcHHHHHHHHHHHHHHHh
Q psy14461        352 IGVDIKKKSYVVCNE-----KDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLY  404 (535)
Q Consensus       352 ~gl~~~~~G~i~vd~-----~~~T~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~  404 (535)
                      .+++++++|.|.+|+     +++||+|+|||+||++ .++.++..|+.+|+.||.+|.
T Consensus       695 ~gl~l~~~G~I~vd~~~v~~~~~Ts~pgVFAaGDv~-~G~~~vv~Ai~~Gr~AA~~I~  751 (1006)
T PRK12775        695 PGLALNKWGNIAADDGKLESTQSTNLPGVFAGGDIV-TGGATVILAMGAGRRAARSIA  751 (1006)
T ss_pred             CCcccCCCCcEEeCCCccccCcCCCCCCEEEecCcC-CCccHHHHHHHHHHHHHHHHH
Confidence            468888889999996     7899999999999999 788899999999999999985

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=100.00  E-value=1.1e-32  Score=294.04  Aligned_cols=326  Identities=17%  Similarity=0.097  Sum_probs=227.6

Q ss_pred             CCCCChhHHHHh------------hhcCCcEEEEeCCCchhhHHHH---------------HHHHHh----cCC--c---
Q psy14461         42 PSFETPPAYISR------------LSYENRILIFTHAVLREENARA---------------ERYLNA----RGD--R---   85 (535)
Q Consensus        42 p~~~~l~~~~~~------------~i~~~~v~v~~k~~cp~~~~~~---------------k~~~~~----~~~--~---   85 (535)
                      |...+.+.|+..            +.+.|++.....+.||+.|..+               ++...+    .+.  .   
T Consensus        59 P~~~~~~~~~~~~~~~~~~~a~~~~~~~~p~~~~~g~vC~~~Ce~~C~~~~~~~~v~i~~l~r~~~~~~~~~~~~~~~~~  138 (471)
T PRK12810         59 PVHNYIPEWNDLVYRGRWEEAAERLHQTNNFPEFTGRVCPAPCEGACTLNINFGPVTIKNIERYIIDKAFEEGWVKPDPP  138 (471)
T ss_pred             CCCCcHHHHHHHHHCCCHHHHHHHHHHhCChhHHhcCcCCchhHHhccCCCCCCCccHHHHHHHHHHHHHHcCCCCCCCC
Confidence            777777777553            5667888888899999878764               222221    110  0   


Q ss_pred             --ceEEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccc-ccccccccccccchhhcccccccccccccCHHHHHH
Q psy14461         86 --FAVLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFR-KKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATK  162 (535)
Q Consensus        86 --~~~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~-~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~  162 (535)
                        ..-.+|+|||+|++|+++|..+...+.+|+|||+.+.++.. ..++|.+                    ... .++..
T Consensus       139 ~~~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~--------------------~~~-~~~~~  197 (471)
T PRK12810        139 VKRTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDF--------------------KLE-KEVID  197 (471)
T ss_pred             cCCCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCcc--------------------cCC-HHHHH
Confidence              11258999999999999999988889999999998866322 1222222                    011 11211


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEceeEEEcceEEEeeCce-ecC-CCCC---CceechhhHHh-
Q psy14461        163 LIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAVERR-CLP-EPRN---SALISADDLFR-  236 (535)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~~~~~~d~lViATGs~-p~~-~i~G---~~v~~~~~~~~-  236 (535)
                      +           ..+.+.+.||+++.++....   .+........||+||||||++ |+. ++||   .++++..+++. 
T Consensus       198 ~-----------~~~~~~~~gv~~~~~~~v~~---~~~~~~~~~~~d~vvlAtGa~~~~~l~ipG~~~~gV~~~~~~l~~  263 (471)
T PRK12810        198 R-----------RIELMEAEGIEFRTNVEVGK---DITAEELLAEYDAVFLGTGAYKPRDLGIPGRDLDGVHFAMDFLIQ  263 (471)
T ss_pred             H-----------HHHHHHhCCcEEEeCCEECC---cCCHHHHHhhCCEEEEecCCCCCCcCCCCCccCCCcEEHHHHHHH
Confidence            1           12456778999988875322   122222345899999999997 666 8998   56766554432 


Q ss_pred             -------------ccCCCCcEEEECCChHHHHHHHHHHhCCC-cEEEEEc-CcCCccC-cH----HH-HHHHHHhhhcCC
Q psy14461        237 -------------LGAWPGKTLVLGGSLMAVEIAATLNFLGV-PVTLVYS-RRLLKHF-DQ----EM-VRILLSSLTKAG  295 (535)
Q Consensus       237 -------------~~~~~k~vvViGgG~~g~e~A~~l~~~g~-~Vtlv~~-~~~l~~~-~~----~~-~~~~~~~l~~~g  295 (535)
                                   ....+++|+|||||++|+|+|..+.++|. +|+++++ +.+.... +.    .. .....+.++++|
T Consensus       264 ~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G  343 (471)
T PRK12810        264 NTRRVLGDETEPFISAKGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPMPPSRRNKNNPWPYWPMKLEVSNAHEEG  343 (471)
T ss_pred             HHhhhccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccCCCccccccccCCcccchHHHHHHHHHcC
Confidence                         12346899999999999999999999986 7887765 3322111 00    00 011245567789


Q ss_pred             eEE-cceEEEEEEEeCCCcEE-EEEecC---------CCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEc
Q psy14461        296 VSI-QCCVIEKVISSFDGMKG-VRGFHP---------ESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVC  364 (535)
Q Consensus       296 V~i-~~~~v~~i~~~~~~~~~-v~~~~~---------~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~v  364 (535)
                      |++ ++..+++|..+ +++++ |++...         ..|+++++++|.||+|+|++|+...+ ++..+++++++|++.+
T Consensus       344 V~i~~~~~~~~i~~~-~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l-~~~~gl~~~~~g~i~v  421 (471)
T PRK12810        344 VEREFNVQTKEFEGE-NGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGL-LAQFGVELDERGRVAA  421 (471)
T ss_pred             CeEEeccCceEEEcc-CCEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCcCCCchhh-ccccCcccCCCCCEEe
Confidence            999 99999999754 45442 443210         13555689999999999999996433 3777888898999999


Q ss_pred             C-CCCCcCCCCEEEeCCcCCCCCCcHHHHHHHHHHHHHHHhC
Q psy14461        365 N-EKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYG  405 (535)
Q Consensus       365 d-~~~~T~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g  405 (535)
                      | ++++|+.|+|||+|||+ +++.++..|+.||+.||.+|..
T Consensus       422 d~~~~~Ts~~gVfa~GD~~-~g~~~~~~Av~~G~~AA~~i~~  462 (471)
T PRK12810        422 PDNAYQTSNPKVFAAGDMR-RGQSLVVWAIAEGRQAARAIDA  462 (471)
T ss_pred             CCCcccCCCCCEEEccccC-CCchhHHHHHHHHHHHHHHHHH
Confidence            8 79999999999999999 7777889999999999999863

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=100.00  E-value=4.3e-32  Score=299.14  Aligned_cols=327  Identities=19%  Similarity=0.161  Sum_probs=235.4

Q ss_pred             CCccccccCCCCCCChhHHHHh------------hhcCCcEEEEeCCCchhhHHHH---------------HHHHHh---
Q psy14461         32 SPTASSCDLLPSFETPPAYISR------------LSYENRILIFTHAVLREENARA---------------ERYLNA---   81 (535)
Q Consensus        32 ~~~~~~~~~~p~~~~l~~~~~~------------~i~~~~v~v~~k~~cp~~~~~~---------------k~~~~~---   81 (535)
                      .|+..+|   |...+++.|+..            +.+.|++.....+.||++|...               ++....   
T Consensus       102 ~pC~~~C---P~~~~~~~~~~~~~~g~~~~a~~~~~~~~p~p~~~grvC~~~Ce~~C~r~~~~~~v~i~~l~r~~~~~~~  178 (652)
T PRK12814        102 GPCELAC---PAGCNIPGFIAAIARGDDREAIRIIKETIPLPGILGRICPAPCEEACRRHGVDEPVSICALKRYAADRDM  178 (652)
T ss_pred             CccccCC---CCCCcHHHHHHHHHCCCHHHHHHHHHhhCCccceeeCCcCchhhHHHcCCCCCCCcchhHHHHHHHHHHH
Confidence            4566677   788888888663            5677899888899999988763               222221   


Q ss_pred             -cCC-------cceEEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhccccccccccc
Q psy14461         82 -RGD-------RFAVLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVT  153 (535)
Q Consensus        82 -~~~-------~~~~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~  153 (535)
                       .+.       .-.-.+|+|||+|++|+.+|..+...+.+|+|||+.+.+++.    ..+  +++..             
T Consensus       179 ~~~~~~~~~~~~~~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~----l~~--gip~~-------------  239 (652)
T PRK12814        179 ESAERYIPERAPKSGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGM----MRY--GIPRF-------------  239 (652)
T ss_pred             hcCcccCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCce----eee--cCCCC-------------
Confidence             000       012358999999999999999998889999999998876332    111  11110             


Q ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEceeEEEcceEEEeeCceec-C-CCCC---Cce
Q psy14461        154 IRNWNAATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAVERRCL-P-EPRN---SAL  228 (535)
Q Consensus       154 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~~~~~~d~lViATGs~p~-~-~i~G---~~v  228 (535)
                      . ....+.++.           .+.+...|+++..++...   ..+++.+....||+||||||+++. . ++||   +++
T Consensus       240 ~-~~~~~~~~~-----------~~~l~~~Gv~i~~~~~v~---~dv~~~~~~~~~DaVilAtGa~~~~~~~ipG~~~~gv  304 (652)
T PRK12814        240 R-LPESVIDAD-----------IAPLRAMGAEFRFNTVFG---RDITLEELQKEFDAVLLAVGAQKASKMGIPGEELPGV  304 (652)
T ss_pred             C-CCHHHHHHH-----------HHHHHHcCCEEEeCCccc---CccCHHHHHhhcCEEEEEcCCCCCCCCCCCCcCcCCc
Confidence            0 011122211           244567799988876421   123333323459999999999864 4 8888   457


Q ss_pred             echhhHHhc------cCCCCcEEEECCChHHHHHHHHHHhCCC-cEEEEEc-Cc-CCccCcHHHHHHHHHhhhcCCeEE-
Q psy14461        229 ISADDLFRL------GAWPGKTLVLGGSLMAVEIAATLNFLGV-PVTLVYS-RR-LLKHFDQEMVRILLSSLTKAGVSI-  298 (535)
Q Consensus       229 ~~~~~~~~~------~~~~k~vvViGgG~~g~e~A~~l~~~g~-~Vtlv~~-~~-~l~~~~~~~~~~~~~~l~~~gV~i-  298 (535)
                      ++..+++..      ...+++|+|||||++|+|+|..+.++|. +||++++ +. .++..+.++.+.     .++||++ 
T Consensus       305 ~~~~~~l~~~~~~~~~~~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~mpa~~~ei~~a-----~~eGV~i~  379 (652)
T PRK12814        305 ISGIDFLRNVALGTALHPGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRTREEMPANRAEIEEA-----LAEGVSLR  379 (652)
T ss_pred             EeHHHHHHHhhcCCcccCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHH-----HHcCCcEE
Confidence            777666542      2357899999999999999999999996 6999998 53 566555544332     3569999 


Q ss_pred             cceEEEEEEEeCCCcEEEE---Eec---C---------CCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceE
Q psy14461        299 QCCVIEKVISSFDGMKGVR---GFH---P---------ESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVV  363 (535)
Q Consensus       299 ~~~~v~~i~~~~~~~~~v~---~~~---~---------~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~  363 (535)
                      ++..+.+|..+ ++.+.++   ++.   .         .+|+++++++|.||+|+|+.|+++++  +..+++++++|+|.
T Consensus       380 ~~~~~~~i~~~-~~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~p~~~ll--~~~gl~~~~~G~I~  456 (652)
T PRK12814        380 ELAAPVSIERS-EGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVDPPIA--EAAGIGTSRNGTVK  456 (652)
T ss_pred             eccCcEEEEec-CCeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCcCCcccc--cccCccccCCCcEe
Confidence            99999998765 3443332   211   0         13455679999999999999999876  66788888889999


Q ss_pred             cCC-CCCcCCCCEEEeCCcCCCCCCcHHHHHHHHHHHHHHHh
Q psy14461        364 CNE-KDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLY  404 (535)
Q Consensus       364 vd~-~~~T~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~  404 (535)
                      ||+ +++|+.|+|||+||++ .++.++..|+.||+.||.+|.
T Consensus       457 vd~~~~~Ts~pgVfA~GDv~-~g~~~v~~Ai~~G~~AA~~I~  497 (652)
T PRK12814        457 VDPETLQTSVAGVFAGGDCV-TGADIAINAVEQGKRAAHAID  497 (652)
T ss_pred             eCCCCCcCCCCCEEEcCCcC-CCchHHHHHHHHHHHHHHHHH
Confidence            996 6899999999999999 778889999999999999985

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=100.00  E-value=2.5e-32  Score=286.39  Aligned_cols=364  Identities=16%  Similarity=0.146  Sum_probs=268.6

Q ss_pred             EEEEeeCCccHHHHHHHHH---hhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHH
Q psy14461         89 LYLDRIGDEGILLEEELKR---QTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIK  165 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~---~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~  165 (535)
                      .+++|||.|.+|..+....   ......||+|-.+++..|.+..+..+   ++++              -+.++      
T Consensus         4 ~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~v---l~~~--------------~~~ed------   60 (793)
T COG1251           4 QKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSV---LAGE--------------KTAED------   60 (793)
T ss_pred             eeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccc---cCCC--------------ccHHH------
Confidence            5689999999997765433   33568899999999999998777655   4432              12222      


Q ss_pred             HHHHHHHHHHHHHHHhcCcEEEEeE-EEEec--CCEEEEce-eEEEcceEEEeeCceecC-CCCC---Ccee---chhhH
Q psy14461        166 RFCIRAKNDSMRELKALGIDIVRTA-AAFTN--PHTIKLSN-RSVTGFNFLLAVERRCLP-EPRN---SALI---SADDL  234 (535)
Q Consensus       166 ~~~~~~~~~~~~~~~~~gV~~~~g~-~~~~~--~~~v~~~~-~~~~~d~lViATGs~p~~-~i~G---~~v~---~~~~~  234 (535)
                           +.....+++++.||+++.++ +.+++  .+.|+.+. ..+.||+|||||||.|+. |+||   +.++   +.+|.
T Consensus        61 -----i~l~~~dwy~~~~i~L~~~~~v~~idr~~k~V~t~~g~~~~YDkLilATGS~pfi~PiPG~~~~~v~~~R~i~D~  135 (793)
T COG1251          61 -----ISLNRNDWYEENGITLYTGEKVIQIDRANKVVTTDAGRTVSYDKLIIATGSYPFILPIPGSDLPGVFVYRTIDDV  135 (793)
T ss_pred             -----HhccchhhHHHcCcEEEcCCeeEEeccCcceEEccCCcEeecceeEEecCccccccCCCCCCCCCeeEEecHHHH
Confidence                 22223478889999999886 44444  55666654 889999999999999999 9999   3444   45555


Q ss_pred             Hhc---cCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC-ccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEE
Q psy14461        235 FRL---GAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL-KHFDQEMVRILLSSLTKAGVSI-QCCVIEKVIS  308 (535)
Q Consensus       235 ~~~---~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l-~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~  308 (535)
                      ..+   .+..++.+|||||..|+|+|..|.+.|.+|++++. +.++ .++|+.....+++.++++|+++ ++....++.+
T Consensus       136 ~am~~~ar~~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lMerQLD~~ag~lL~~~le~~Gi~~~l~~~t~ei~g  215 (793)
T COG1251         136 EAMLDCARNKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVLLEKNTEEIVG  215 (793)
T ss_pred             HHHHHHHhccCCcEEEccchhhhHHHHHHHhCCCceEEEeecchHHHHhhhhHHHHHHHHHHHhhcceeecccchhhhhc
Confidence            433   23456789999999999999999999999999999 8887 5899999999999999999999 9988888876


Q ss_pred             eCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCC---CC
Q psy14461        309 SFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVH---GK  385 (535)
Q Consensus       309 ~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~---~~  385 (535)
                      . +....+.+.   ||+  .+++|.|++|+|++||+++.  ..+|+++++ | |.||++||||.|+|||+|+|++   ..
T Consensus       216 ~-~~~~~vr~~---DG~--~i~ad~VV~a~GIrPn~ela--~~aGlavnr-G-Ivvnd~mqTsdpdIYAvGEcae~~g~~  285 (793)
T COG1251         216 E-DKVEGVRFA---DGT--EIPADLVVMAVGIRPNDELA--KEAGLAVNR-G-IVVNDYMQTSDPDIYAVGECAEHRGKV  285 (793)
T ss_pred             C-cceeeEeec---CCC--cccceeEEEecccccccHhH--HhcCcCcCC-C-eeecccccccCCCeeehhhHHHhcCcc
Confidence            3 344467774   898  89999999999999999986  788999885 4 9999999999999999999996   23


Q ss_pred             CCcHHHHHHHHHHHHHHHhCCCCC-CCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCC
Q psy14461        386 PNNASMAAISARLIIERLYGMQDQ-LMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLP  464 (535)
Q Consensus       386 ~~~~~~A~~~g~~aa~~i~g~~~~-~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  464 (535)
                      +.++..+..|++++|+|+.+.... +......+...-++-++.+.|--. +..      +-+.+.  |.+      +   
T Consensus       286 yGLVaP~yeq~~v~a~hl~~~~~~~y~gsv~stkLKv~Gvdl~S~GD~~-e~~------~~~~iv--~~D------~---  347 (793)
T COG1251         286 YGLVAPLYEQAKVLADHLCGGEAEAYEGSVTSTKLKVSGVDVFSAGDFQ-ETE------GAESIV--FRD------E---  347 (793)
T ss_pred             ceehhHHHHHHHHHHHHhccCcccccccccchhhhcccccceeeccchh-hcC------CCceEE--Eec------c---
Confidence            678889999999999999987543 222211223344566777777443 111      111111  111      1   


Q ss_pred             cchhhhhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHc
Q psy14461        465 ENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELD  533 (535)
Q Consensus       465 ~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~  533 (535)
                                           ....|-|++..  +++|+|+.++|+-+.  =+.+-.+|..+..++++.
T Consensus       348 ---------------------~~~iYKrlvL~--dd~IvgavL~GDt~d--~~~l~~li~~~~~~se~r  391 (793)
T COG1251         348 ---------------------QRGIYKKLVLK--DDKIVGAVLYGDTSD--GGWLLDLILKGADISEIR  391 (793)
T ss_pred             ---------------------cccceeEEEEe--CCeEEEEEEEeeccc--chHHHHHHhcCCCccccc
Confidence                                 12457788875  579999999998421  123445566666665543

>PRK10262 thioredoxin reductase; Provisional

Probab=100.00  E-value=1.3e-31  Score=272.69  Aligned_cols=288  Identities=13%  Similarity=0.072  Sum_probs=201.8

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHH
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRF  167 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  167 (535)
                      ..+|+|||+||+|+.+|+.....+.++++||+.+ .+......+.    +.    ++|+.    ....+++.+.++..  
T Consensus         6 ~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~-~gg~~~~~~~----~~----~~~~~----~~~~~~~~~~~~~~--   70 (321)
T PRK10262          6 HSKLLILGSGPAGYTAAVYAARANLQPVLITGME-KGGQLTTTTE----VE----NWPGD----PNDLTGPLLMERMH--   70 (321)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeec-CCCceecCce----EC----CCCCC----CCCCCHHHHHHHHH--
Confidence            3578999999999999999888888999999653 2211100000    00    01110    12345554444433  


Q ss_pred             HHHHHHHHHHHHHhcCcEEEEeEEEEe--cCCEEEEc--eeEEEcceEEEeeCceecC-CCCC-C-----ceechhhHHh
Q psy14461        168 CIRAKNDSMRELKALGIDIVRTAAAFT--NPHTIKLS--NRSVTGFNFLLAVERRCLP-EPRN-S-----ALISADDLFR  236 (535)
Q Consensus       168 ~~~~~~~~~~~~~~~gV~~~~g~~~~~--~~~~v~~~--~~~~~~d~lViATGs~p~~-~i~G-~-----~v~~~~~~~~  236 (535)
                               ......++++..+++..+  ....+++.  ...+.||+||||||++|+. ++|| +     .++.......
T Consensus        71 ---------~~~~~~~~~~~~~~v~~v~~~~~~~~v~~~~~~~~~d~vilAtG~~~~~~~i~g~~~~~~~~v~~~~~~~~  141 (321)
T PRK10262         71 ---------EHATKFETEIIFDHINKVDLQNRPFRLTGDSGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDG  141 (321)
T ss_pred             ---------HHHHHCCCEEEeeEEEEEEecCCeEEEEecCCEEEECEEEECCCCCCCCCCCCCHHHcCCCcEEEeecCCH
Confidence                     344445666666554332  23344443  3578999999999999988 8998 2     1222211111


Q ss_pred             ccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcE
Q psy14461        237 LGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMK  314 (535)
Q Consensus       237 ~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~  314 (535)
                      ....+++++|||+|++|+|+|..|++.+.+||++++ +.+.  .++.+.+.+++.|++.||++ +++.++++..++.+..
T Consensus       142 ~~~~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~--~~~~~~~~~~~~l~~~gV~i~~~~~v~~v~~~~~~~~  219 (321)
T PRK10262        142 FFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR--AEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVT  219 (321)
T ss_pred             HHcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccC--CCHHHHHHHHhhccCCCeEEEeCCEEEEEEcCCccEE
Confidence            224578999999999999999999999999999999 6552  35677888899999999999 9999999986521222


Q ss_pred             EEEEecCC-CCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCC-----CCCcCCCCEEEeCCcCCCCCCc
Q psy14461        315 GVRGFHPE-SKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNE-----KDQTSVGNIFAVGGIVHGKPNN  388 (535)
Q Consensus       315 ~v~~~~~~-~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~-----~~~T~~~~IyA~GD~~~~~~~~  388 (535)
                      .|++.+.. +++.+++++|.|++++|++||+.++  .. ++.++ +|+|.||+     +++|+.|+|||+|||+...+.+
T Consensus       220 ~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~~l~--~~-~l~~~-~g~i~vd~~~~~~~~~t~~~~VyA~GD~~~~~~~~  295 (321)
T PRK10262        220 GVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIF--EG-QLELE-NGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQ  295 (321)
T ss_pred             EEEEEEcCCCCeEEEEECCEEEEEeCCccChhHh--hc-ccccc-CCEEEECCCCcccccccCCCCEEECeeccCCCcce
Confidence            45554311 2334579999999999999999875  22 45554 68999997     7899999999999999323456


Q ss_pred             HHHHHHHHHHHHHHHhC
Q psy14461        389 ASMAAISARLIIERLYG  405 (535)
Q Consensus       389 ~~~A~~~g~~aa~~i~g  405 (535)
                      ...|+.+|+.||..|..
T Consensus       296 ~~~A~~~g~~Aa~~~~~  312 (321)
T PRK10262        296 AITSAGTGCMAALDAER  312 (321)
T ss_pred             EEEEehhHHHHHHHHHH
Confidence            67799999999999864

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=100.00  E-value=1.1e-31  Score=297.11  Aligned_cols=323  Identities=18%  Similarity=0.132  Sum_probs=226.6

Q ss_pred             CCCCChhHHHH------------hhhcCCcEEEEeCCCchh--hHHHH---------------HHHHH----hcC-----
Q psy14461         42 PSFETPPAYIS------------RLSYENRILIFTHAVLRE--ENARA---------------ERYLN----ARG-----   83 (535)
Q Consensus        42 p~~~~l~~~~~------------~~i~~~~v~v~~k~~cp~--~~~~~---------------k~~~~----~~~-----   83 (535)
                      |.-++++.|+.            .+.+.|++..+..+.||+  .|..+               ++...    ..+     
T Consensus       241 P~~~~i~~~~~~~~~g~~~~A~~~~~~~np~p~~~grvCp~~~~Ce~~C~~~~~~~~v~I~~l~r~~~d~~~~~~~~~~~  320 (654)
T PRK12769        241 PLHNHIPQWIELVKAGNIDAAVELSHQTNSLPEITGRVCPQDRLCEGACTLRDEYGAVTIGNIERYISDQALAKGWRPDL  320 (654)
T ss_pred             CCCCcHHHHHHHHHCCCHHHHHHHHHHhCCchhHhcccCCCCCChHHhccCCCCCCCeecCHHHHHHHHHHHHhCCCCCC
Confidence            66666666644            467789999999999993  57764               22221    111     


Q ss_pred             --CcceEEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHH
Q psy14461         84 --DRFAVLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAAT  161 (535)
Q Consensus        84 --~~~~~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~  161 (535)
                        ....-.+|+|||+||+|+++|..+...+.+|+|||+.+.+++    ++.+  +++..             .++. ++.
T Consensus       321 ~~~~~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG----~l~~--gip~~-------------~l~~-~~~  380 (654)
T PRK12769        321 SQVTKSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGG----LLTF--GIPAF-------------KLDK-SLL  380 (654)
T ss_pred             cccccCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCc----eeee--cCCCc-------------cCCH-HHH
Confidence              011235899999999999999999889999999999886633    2222  12211             1111 122


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEceeEEEcceEEEeeCceec-C-CCCC---CceechhhHH-
Q psy14461        162 KLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAVERRCL-P-EPRN---SALISADDLF-  235 (535)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~~~~~~d~lViATGs~p~-~-~i~G---~~v~~~~~~~-  235 (535)
                      .+           ..+.++..||++..++..   ...+.+......||+||+|||+.+. . ++||   .++++..+++ 
T Consensus       381 ~~-----------~~~~~~~~Gv~~~~~~~v---~~~i~~~~~~~~~DavilAtGa~~~~~l~i~g~~~~Gv~~a~~~l~  446 (654)
T PRK12769        381 AR-----------RREIFSAMGIEFELNCEV---GKDISLESLLEDYDAVFVGVGTYRSMKAGLPNEDAPGVYDALPFLI  446 (654)
T ss_pred             HH-----------HHHHHHHCCeEEECCCEe---CCcCCHHHHHhcCCEEEEeCCCCCCCCCCCCCCCCCCeEEhHHHHH
Confidence            21           125567789998876532   1223333323579999999999654 4 7887   4566543332 


Q ss_pred             -------hc---------cCCCCcEEEECCChHHHHHHHHHHhCCC-cEEEEEc-Cc-CCccCcHHHHHHHHHhhhcCCe
Q psy14461        236 -------RL---------GAWPGKTLVLGGSLMAVEIAATLNFLGV-PVTLVYS-RR-LLKHFDQEMVRILLSSLTKAGV  296 (535)
Q Consensus       236 -------~~---------~~~~k~vvViGgG~~g~e~A~~l~~~g~-~Vtlv~~-~~-~l~~~~~~~~~~~~~~l~~~gV  296 (535)
                             .+         ...+++|+|||||++|+|+|..+.++|. +||++++ +. .++..+.++     +.++++||
T Consensus       447 ~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~~~~~~~e~-----~~~~~~Gv  521 (654)
T PRK12769        447 ANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEANMPGSKKEV-----KNAREEGA  521 (654)
T ss_pred             HHHhhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCCCCCCCCHHHH-----HHHHHcCC
Confidence                   11         1235799999999999999999999996 7999998 54 355544432     44677899


Q ss_pred             EE-cceEEEEEEEeCCCcE-EEEEecC------C---------CCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCC
Q psy14461        297 SI-QCCVIEKVISSFDGMK-GVRGFHP------E---------SKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKK  359 (535)
Q Consensus       297 ~i-~~~~v~~i~~~~~~~~-~v~~~~~------~---------~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~  359 (535)
                      ++ ++..++++..++++++ .|++...      .         .|+++++++|.||+|+|+.|++..+ ++..+++++++
T Consensus       522 ~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~-~~~~gl~~~~~  600 (654)
T PRK12769        522 NFEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHGMPW-LESHGVTVDKW  600 (654)
T ss_pred             eEEeccCcEEEEECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCCCCcccc-ccccCCcCCCC
Confidence            99 9999999975434444 2433210      1         2455689999999999999996433 36778999999


Q ss_pred             CceEcCC----CCCcCCCCEEEeCCcCCCCCCcHHHHHHHHHHHHHHHhC
Q psy14461        360 SYVVCNE----KDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYG  405 (535)
Q Consensus       360 G~i~vd~----~~~T~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g  405 (535)
                      |+|.+|+    +++|+.|+|||+||++ .++.++..|+.+|+.||.+|..
T Consensus       601 G~i~vd~~~~~~~~Ts~~gVfAaGD~~-~g~~~vv~Ai~~Gr~AA~~I~~  649 (654)
T PRK12769        601 GRIIADVESQYRYQTSNPKIFAGGDAV-RGADLVVTAMAEGRHAAQGIID  649 (654)
T ss_pred             CCEEeCCCcccCcccCCCCEEEcCCcC-CCCcHHHHHHHHHHHHHHHHHH
Confidence            9999986    4899999999999999 7888999999999999999964

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.9e-31  Score=264.05  Aligned_cols=278  Identities=18%  Similarity=0.149  Sum_probs=207.7

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCe-EEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHH
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRR-DELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKR  166 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~-V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  166 (535)
                      .++++|||+||+|++||++..+.+.+ ++|+|+.. .+.    .+..   .. .+.++|++.    .......+++.+. 
T Consensus         3 ~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~-~gg----~~~~---~~-~venypg~~----~~~~g~~L~~~~~-   68 (305)
T COG0492           3 IYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGE-PGG----QLTK---TT-DVENYPGFP----GGILGPELMEQMK-   68 (305)
T ss_pred             eeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCC-cCC----cccc---ce-eecCCCCCc----cCCchHHHHHHHH-
Confidence            58999999999999999999999988 66666653 221    1111   11 233344442    2244555655554 


Q ss_pred             HHHHHHHHHHHHHHhcCcEEEEeEEEEecC----CEEEEceeEEEcceEEEeeCceecC-CCCC---------Cceechh
Q psy14461        167 FCIRAKNDSMRELKALGIDIVRTAAAFTNP----HTIKLSNRSVTGFNFLLAVERRCLP-EPRN---------SALISAD  232 (535)
Q Consensus       167 ~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~----~~v~~~~~~~~~d~lViATGs~p~~-~i~G---------~~v~~~~  232 (535)
                                ++....++++....+..++.    ..|.+++.++++++||||||+.++. .+||         .++.+++
T Consensus        69 ----------~~a~~~~~~~~~~~v~~v~~~~~~F~v~t~~~~~~ak~vIiAtG~~~~~~~~~~e~e~~g~gv~yc~~cd  138 (305)
T COG0492          69 ----------EQAEKFGVEIVEDEVEKVELEGGPFKVKTDKGTYEAKAVIIATGAGARKLGVPGEEEFEGKGVSYCATCD  138 (305)
T ss_pred             ----------HHHhhcCeEEEEEEEEEEeecCceEEEEECCCeEEEeEEEECcCCcccCCCCCcchhhcCCceEEeeecC
Confidence                      55667899988877665432    3555555669999999999999988 7776         1233444


Q ss_pred             hHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcC-CeEE-cceEEEEEEEe
Q psy14461        233 DLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKA-GVSI-QCCVIEKVISS  309 (535)
Q Consensus       233 ~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~-gV~i-~~~~v~~i~~~  309 (535)
                      .    ....|+|+|||||++|+|.|.+|.+.+.+||+++| +.+.+  .+.+    .+.++++ +|++ +++.++++.++
T Consensus       139 g----~~~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra--~~~~----~~~l~~~~~i~~~~~~~i~ei~G~  208 (305)
T COG0492         139 G----FFKGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRA--EEIL----VERLKKNVKIEVLTNTVVKEILGD  208 (305)
T ss_pred             c----cccCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccCc--CHHH----HHHHHhcCCeEEEeCCceeEEecC
Confidence            4    12357999999999999999999999999999999 77655  3333    3444443 8999 99999999875


Q ss_pred             CCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCCCcH
Q psy14461        310 FDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNA  389 (535)
Q Consensus       310 ~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~~~~  389 (535)
                       + ...|++++.. |++..+++|.+++++|..|+++++  ...++ ++++|+|.+|+.++||+|+|||+||++.....++
T Consensus       209 -~-v~~v~l~~~~-~~~~~~~~~gvf~~iG~~p~~~~~--~~~~~-~~~~g~I~v~~~~~TsvpGifAaGDv~~~~~rqi  282 (305)
T COG0492         209 -D-VEGVVLKNVK-GEEKELPVDGVFIAIGHLPNTELL--KGLGV-LDENGYIVVDEEMETSVPGIFAAGDVADKNGRQI  282 (305)
T ss_pred             -c-cceEEEEecC-CceEEEEeceEEEecCCCCchHHH--hhccc-cCCCCcEEcCCCcccCCCCEEEeEeeccCcccEE
Confidence             2 2356776422 777799999999999999999887  55555 7889999999999999999999999994334478


Q ss_pred             HHHHHHHHHHHHHHhC
Q psy14461        390 SMAAISARLIIERLYG  405 (535)
Q Consensus       390 ~~A~~~g~~aa~~i~g  405 (535)
                      ..|..+|.+||.++..
T Consensus       283 ~ta~~~G~~Aa~~a~~  298 (305)
T COG0492         283 ATAAGDGAIAALSAER  298 (305)
T ss_pred             eehhhhHHHHHHHHHH
Confidence            8999999999998753

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=100.00  E-value=2.2e-31  Score=283.22  Aligned_cols=327  Identities=17%  Similarity=0.110  Sum_probs=230.5

Q ss_pred             ccccccCCCCCCChhHHHH------------hhhcCCcEEEEeCCCch--hhHHHH---------------HHHHHh---
Q psy14461         34 TASSCDLLPSFETPPAYIS------------RLSYENRILIFTHAVLR--EENARA---------------ERYLNA---   81 (535)
Q Consensus        34 ~~~~~~~~p~~~~l~~~~~------------~~i~~~~v~v~~k~~cp--~~~~~~---------------k~~~~~---   81 (535)
                      +..+|   |.-.+++.|+.            .+.+.|++.....+.||  ++|..+               ++...+   
T Consensus        50 C~~~C---P~~~~~~~~~~~~~~g~~~~a~~~~~~~np~~~~~grvC~~~~~Ce~~C~~~~~~~~v~i~~l~r~~~~~~~  126 (467)
T TIGR01318        50 CEWKC---PVHNAIPQWLQLVQEGRIDEAAELSHQTNTLPEICGRVCPQDRLCEGACTLNDEFGAVTIGNLERYITDTAL  126 (467)
T ss_pred             ccccC---CCCCcHHHHHHHHHCCCHHHHHHHHHHhCCchHhhcccCCCCCChHHhCcCCCCCCCccHHHHHHHHHHHHH
Confidence            33456   77777777755            35667888888899998  478764               222211   


Q ss_pred             -cC--C-----cceEEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccc-ccccccccccccchhhcccccccccc
Q psy14461         82 -RG--D-----RFAVLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFR-KKRRLYYPVAMSDLELEQDSTSALNV  152 (535)
Q Consensus        82 -~~--~-----~~~~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~-~~~l~~~~~~i~~~~~~~~~~~~~~~  152 (535)
                       .+  .     +..-.+|+|||+|++|+.+|..+...+.+|+|+|+.+.+++. +.++|.+                   
T Consensus       127 ~~~~~~~~~~~~~~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~-------------------  187 (467)
T TIGR01318       127 AMGWRPDLSHVVPTGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSF-------------------  187 (467)
T ss_pred             HhCCCCCCCCcCCCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccc-------------------
Confidence             00  0     112357999999999999999888889999999999865322 1122221                   


Q ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEceeEEEcceEEEeeCceecC--CCCC---Cc
Q psy14461        153 TIRNWNAATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAVERRCLP--EPRN---SA  227 (535)
Q Consensus       153 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~~~~~~d~lViATGs~p~~--~i~G---~~  227 (535)
                       ..+ .++..+           ..+.++..||+++.++..   ...+.+.+....||+||+|||+.+..  +|||   ++
T Consensus       188 -~~~-~~~~~~-----------~~~~~~~~Gv~~~~~~~v---~~~~~~~~~~~~~D~vilAtGa~~~~~~~i~g~~~~g  251 (467)
T TIGR01318       188 -KLD-KAVLSR-----------RREIFTAMGIEFHLNCEV---GRDISLDDLLEDYDAVFLGVGTYRSMRGGLPGEDAPG  251 (467)
T ss_pred             -cCC-HHHHHH-----------HHHHHHHCCCEEECCCEe---CCccCHHHHHhcCCEEEEEeCCCCCCcCCCCCcCCCC
Confidence             111 112221           125677789998877532   12233333335799999999998754  8888   56


Q ss_pred             eechhhHHh--------cc---------CCCCcEEEECCChHHHHHHHHHHhCCC-cEEEEEc-Cc-CCccCcHHHHHHH
Q psy14461        228 LISADDLFR--------LG---------AWPGKTLVLGGSLMAVEIAATLNFLGV-PVTLVYS-RR-LLKHFDQEMVRIL  287 (535)
Q Consensus       228 v~~~~~~~~--------~~---------~~~k~vvViGgG~~g~e~A~~l~~~g~-~Vtlv~~-~~-~l~~~~~~~~~~~  287 (535)
                      +++..+++.        +.         ...++++|||+|++|+++|..+.++|. +||++++ +. .++..+.++    
T Consensus       252 V~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~~~~~~~~e~----  327 (467)
T TIGR01318       252 VLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDEANMPGSRREV----  327 (467)
T ss_pred             cEEHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCcccCCCCHHHH----
Confidence            776544331        11         235899999999999999999999995 7999998 54 455554443    


Q ss_pred             HHhhhcCCeEE-cceEEEEEEEeCCCcE-EEEEecC---------------CCCCceEEEcCEEEEccCCCCCCCCCCcc
Q psy14461        288 LSSLTKAGVSI-QCCVIEKVISSFDGMK-GVRGFHP---------------ESKEPFADVFKTVVNAMEKKFDFAALNLH  350 (535)
Q Consensus       288 ~~~l~~~gV~i-~~~~v~~i~~~~~~~~-~v~~~~~---------------~~G~~~~~~~D~vi~a~G~~p~~~~l~l~  350 (535)
                       +.++++||++ +++.++++..++++++ .|++..+               .+|+++++++|.||+|+|++|+...+ ++
T Consensus       328 -~~~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~~-~~  405 (467)
T TIGR01318       328 -ANAREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHAMPW-LA  405 (467)
T ss_pred             -HHHHhcCCEEEecCCcEEEEECCCCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCCCCcccc-cc
Confidence             3456789999 9999999976433443 2333210               12445689999999999999986433 36


Q ss_pred             ccCeeecCCCceEcC----CCCCcCCCCEEEeCCcCCCCCCcHHHHHHHHHHHHHHHhC
Q psy14461        351 HIGVDIKKKSYVVCN----EKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYG  405 (535)
Q Consensus       351 ~~gl~~~~~G~i~vd----~~~~T~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g  405 (535)
                      ..+++++++|+|.+|    ++++|+.|+|||+||++ +++.++..|+.+|+.||.+|..
T Consensus       406 ~~gl~~~~~g~i~vd~~~~~~~~T~~~gVfa~GD~~-~~~~~~~~Ai~~G~~aA~~i~~  463 (467)
T TIGR01318       406 GHGITLDSWGRIITGDVSYLPYQTTNPKIFAGGDAV-RGADLVVTAVAEGRQAAQGILD  463 (467)
T ss_pred             ccCccCCCCCCEEeCCccccCccCCCCCEEEECCcC-CCccHHHHHHHHHHHHHHHHHH
Confidence            678888889999999    68899999999999999 7788889999999999999863

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=100.00  E-value=6.2e-31  Score=285.49  Aligned_cols=282  Identities=11%  Similarity=0.035  Sum_probs=197.2

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHH
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRF  167 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  167 (535)
                      .++|+|||+||||+.+|+.+...+.+|+|||++. +++.. .....   +.    ++++.     .......+.++.   
T Consensus         4 ~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~-~GG~~-~~~~~---i~----~~pg~-----~~~~~~~l~~~l---   66 (555)
T TIGR03143         4 IYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDD-FGGQI-TITSE---VV----NYPGI-----LNTTGPELMQEM---   66 (555)
T ss_pred             cCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC-CCceE-Eeccc---cc----cCCCC-----cCCCHHHHHHHH---
Confidence            3789999999999999999888999999999975 32221 00000   10    01111     112233333322   


Q ss_pred             HHHHHHHHHHHHHhcCcEEEEeEEEEecC--C--EEEEceeEEEcceEEEeeCceecC-CCCC-C-----ceechhhHHh
Q psy14461        168 CIRAKNDSMRELKALGIDIVRTAAAFTNP--H--TIKLSNRSVTGFNFLLAVERRCLP-EPRN-S-----ALISADDLFR  236 (535)
Q Consensus       168 ~~~~~~~~~~~~~~~gV~~~~g~~~~~~~--~--~v~~~~~~~~~d~lViATGs~p~~-~i~G-~-----~v~~~~~~~~  236 (535)
                              ...++..|++++.+++..++.  +  .+...+..+.||+||||||++|+. ++|| +     .++.......
T Consensus        67 --------~~~~~~~gv~~~~~~V~~i~~~~~~~~V~~~~g~~~a~~lVlATGa~p~~~~ipG~~~~~~~~v~~~~~~~~  138 (555)
T TIGR03143        67 --------RQQAQDFGVKFLQAEVLDVDFDGDIKTIKTARGDYKTLAVLIATGASPRKLGFPGEEEFTGRGVAYCATCDG  138 (555)
T ss_pred             --------HHHHHHcCCEEeccEEEEEEecCCEEEEEecCCEEEEeEEEECCCCccCCCCCCCHHHhCCceEEEEeecCh
Confidence                    245566789988777655432  2  344444568999999999999998 8998 2     1221111111


Q ss_pred             ccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcE
Q psy14461        237 LGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMK  314 (535)
Q Consensus       237 ~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~  314 (535)
                      ....+++|+|||||++|+|+|..|+++|.+||++++ +.+..  +....   .+.++.+||++ +++.|+++.++  +.+
T Consensus       139 ~~~~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~~~--~~~~~---~~~~~~~gV~i~~~~~V~~i~~~--~~v  211 (555)
T TIGR03143       139 EFFTGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFTC--AKLIA---EKVKNHPKIEVKFNTELKEATGD--DGL  211 (555)
T ss_pred             hhcCCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCcccc--CHHHH---HHHHhCCCcEEEeCCEEEEEEcC--CcE
Confidence            123478999999999999999999999999999999 66532  23322   23344579999 99999999853  333


Q ss_pred             -EEEEecCCCCCceEE--EcCE----EEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCCC
Q psy14461        315 -GVRGFHPESKEPFAD--VFKT----VVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPN  387 (535)
Q Consensus       315 -~v~~~~~~~G~~~~~--~~D~----vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~~  387 (535)
                       .+.+.+..+|+..++  ++|.    |++++|++||+.++  +. +++++++|+|.||++++|+.|+|||+|||+...+.
T Consensus       212 ~~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~~Pn~~l~--~~-~l~l~~~G~I~vd~~~~Ts~p~IyAaGDv~~~~~~  288 (555)
T TIGR03143       212 RYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPSSELF--KG-VVELDKRGYIPTNEDMETNVPGVYAAGDLRPKELR  288 (555)
T ss_pred             EEEEEEECCCCCEEEEeccccccceEEEEEeCCCCChhHH--hh-hcccCCCCeEEeCCccccCCCCEEEceeccCCCcc
Confidence             234433235764444  3676    99999999999876  33 57888899999999999999999999999722445


Q ss_pred             cHHHHHHHHHHHHHHHh
Q psy14461        388 NASMAAISARLIIERLY  404 (535)
Q Consensus       388 ~~~~A~~~g~~aa~~i~  404 (535)
                      .+..|+.||+.||.+|.
T Consensus       289 ~v~~A~~~G~~Aa~~i~  305 (555)
T TIGR03143       289 QVVTAVADGAIAATSAE  305 (555)
T ss_pred             hheeHHhhHHHHHHHHH
Confidence            67789999999999995

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=99.97  E-value=2.2e-30  Score=285.51  Aligned_cols=323  Identities=17%  Similarity=0.148  Sum_probs=227.5

Q ss_pred             CCCCChhHHHH------------hhhcCCcEEEEeCCCchh--hHHHH---------------HHHHH----hcC-----
Q psy14461         42 PSFETPPAYIS------------RLSYENRILIFTHAVLRE--ENARA---------------ERYLN----ARG-----   83 (535)
Q Consensus        42 p~~~~l~~~~~------------~~i~~~~v~v~~k~~cp~--~~~~~---------------k~~~~----~~~-----   83 (535)
                      |.-++++.|+.            .+.+.|++..+..+.||+  .|..+               +++..    ..+     
T Consensus       224 P~~~~i~~~~~~~~~g~~~~a~~~~~~~np~p~~~grvCp~~~~Ce~~C~~~~~~~~v~i~~l~r~~~d~~~~~~~~~~~  303 (639)
T PRK12809        224 PLHNAIPDYIRLVQEGKIIEAAELCHQTSSLPEICGRVCPQDRLCEGACTLKDHSGAVSIGNLERYITDTALAMGWRPDV  303 (639)
T ss_pred             CCCCcHHHHHHHHHCCCHHHHHHHHHHhCCcchhhcccCCCCCChHHhccCCCcCCCcChhHHHHHHHHHHHHhCCCCCC
Confidence            66666766644            467779999999999983  57764               22221    111     


Q ss_pred             --CcceEEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHH
Q psy14461         84 --DRFAVLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAAT  161 (535)
Q Consensus        84 --~~~~~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~  161 (535)
                        ....-.+|+|||+|++|+.+|..+...+.+|+|||+.+.+++    ++.|  +++..             .++.. +.
T Consensus       304 ~~~~~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG----~l~~--gip~~-------------~l~~~-~~  363 (639)
T PRK12809        304 SKVVPRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGG----MLTF--GIPPF-------------KLDKT-VL  363 (639)
T ss_pred             CcccCCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCC----eeec--cCCcc-------------cCCHH-HH
Confidence              011236789999999999999988888999999999987632    2211  12211             12221 11


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEceeEEEcceEEEeeCceecC--CCCC---CceechhhHHh
Q psy14461        162 KLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAVERRCLP--EPRN---SALISADDLFR  236 (535)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~~~~~~d~lViATGs~p~~--~i~G---~~v~~~~~~~~  236 (535)
                      .+           ..+.++..||+++.++..   ...+.+.+....||+||+|||+.+..  ++||   .+++++-+++.
T Consensus       364 ~~-----------~~~~~~~~Gv~~~~~~~v---~~~~~~~~l~~~~DaV~latGa~~~~~~~i~g~~~~gv~~a~~~l~  429 (639)
T PRK12809        364 SQ-----------RREIFTAMGIDFHLNCEI---GRDITFSDLTSEYDAVFIGVGTYGMMRADLPHEDAPGVIQALPFLT  429 (639)
T ss_pred             HH-----------HHHHHHHCCeEEEcCCcc---CCcCCHHHHHhcCCEEEEeCCCCCCCCCCCCCCccCCcEeHHHHHH
Confidence            11           125567789999887632   22334433446799999999997654  7888   45666533331


Q ss_pred             --------cc---------CCCCcEEEECCChHHHHHHHHHHhCCC-cEEEEEc-CcC-CccCcHHHHHHHHHhhhcCCe
Q psy14461        237 --------LG---------AWPGKTLVLGGSLMAVEIAATLNFLGV-PVTLVYS-RRL-LKHFDQEMVRILLSSLTKAGV  296 (535)
Q Consensus       237 --------~~---------~~~k~vvViGgG~~g~e~A~~l~~~g~-~Vtlv~~-~~~-l~~~~~~~~~~~~~~l~~~gV  296 (535)
                              +.         ..+++|+|||+|++|+++|..+.++|. +||++++ +.. ++..+.++.     .++++||
T Consensus       430 ~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~~~~~~~~~e~~-----~a~~eGv  504 (639)
T PRK12809        430 AHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDEVSMPGSRKEVV-----NAREEGV  504 (639)
T ss_pred             HHHHhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHH-----HHHHcCC
Confidence                    11         135899999999999999999999995 8999998 543 555544432     2467799


Q ss_pred             EE-cceEEEEEEEeCCCcEE-EEEecC------C---------CCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCC
Q psy14461        297 SI-QCCVIEKVISSFDGMKG-VRGFHP------E---------SKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKK  359 (535)
Q Consensus       297 ~i-~~~~v~~i~~~~~~~~~-v~~~~~------~---------~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~  359 (535)
                      ++ +++.+++|..+++++++ +++...      .         .|+++++++|.||+|+|+.|+...+ ++..+++++++
T Consensus       505 ~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~~~~-~~~~gl~~~~~  583 (639)
T PRK12809        505 EFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMPW-LQGSGIKLDKW  583 (639)
T ss_pred             eEEeccCCEEEEECCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCCCCCcccc-ccccCcccCCC
Confidence            99 99999999765345443 322110      0         2456689999999999999975433 36678999989


Q ss_pred             CceEcCC----CCCcCCCCEEEeCCcCCCCCCcHHHHHHHHHHHHHHHhC
Q psy14461        360 SYVVCNE----KDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYG  405 (535)
Q Consensus       360 G~i~vd~----~~~T~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g  405 (535)
                      |+|.+|+    +++|+.|+|||+||++ .++.++..|+.+|+.||.+|..
T Consensus       584 G~i~vd~~~~~~~~Ts~~gVfA~GD~~-~g~~~vv~Ai~~Gr~AA~~i~~  632 (639)
T PRK12809        584 GLIQTGDVGYLPTQTHLKKVFAGGDAV-HGADLVVTAMAAGRQAARDMLT  632 (639)
T ss_pred             CCEEeCCCcccCcccCCCCEEEcCCCC-CCchHHHHHHHHHHHHHHHHHH
Confidence            9999985    4899999999999999 7788899999999999999974

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=99.97  E-value=1.5e-30  Score=277.88  Aligned_cols=326  Identities=16%  Similarity=0.054  Sum_probs=220.4

Q ss_pred             CCCCChhHHHH------------hhhcCCcEEEEeCCCchhhHHHH---------------HHHHHh----cC-------
Q psy14461         42 PSFETPPAYIS------------RLSYENRILIFTHAVLREENARA---------------ERYLNA----RG-------   83 (535)
Q Consensus        42 p~~~~l~~~~~------------~~i~~~~v~v~~k~~cp~~~~~~---------------k~~~~~----~~-------   83 (535)
                      |...+.+.|+.            .+.+.|++.-...+.||+.|..+               ++...+    .+       
T Consensus        59 P~~~~i~~~~~~~~~g~~~~a~~~~~~~~p~p~~~grvC~~~Ce~~C~~~~~~~~v~I~~l~r~~~~~~~~~~~~~~~~~  138 (485)
T TIGR01317        59 PLNNLIPEFNDLVFRGRWKEALDRLHATNNFPEFTGRVCPAPCEGACTLGISEDPVGIKSIERIIIDKGFQEGWVQPRPP  138 (485)
T ss_pred             CCCCcHHHHHHHHHCCCHHHHHHHHHhhCCchhHHhCcCChhhHHhccCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCC
Confidence            66667766644            35667888887889999888764               222210    00       


Q ss_pred             CcceEEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccc-ccccccccccccchhhcccccccccccccCHHHHHH
Q psy14461         84 DRFAVLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFR-KKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATK  162 (535)
Q Consensus        84 ~~~~~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~-~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~  162 (535)
                      ..-.-.+++|||+|++|+.+|..+...+.+|+|||+.+.+++. +.++|.+                    ..+. .+..
T Consensus       139 ~~~~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~gip~~--------------------~~~~-~~~~  197 (485)
T TIGR01317       139 SKRTGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYGIPNM--------------------KLDK-AIVD  197 (485)
T ss_pred             cCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeeccCCCc--------------------cCCH-HHHH
Confidence            0111258999999999999999888888999999998865321 1122221                    0111 1211


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEceeEEEcceEEEeeCce-ecC-CCCC---CceechhhHHh-
Q psy14461        163 LIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAVERR-CLP-EPRN---SALISADDLFR-  236 (535)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~~~~~~d~lViATGs~-p~~-~i~G---~~v~~~~~~~~-  236 (535)
                      +           ..+.+++.||+++.++...   ..+..+.....||+||||||++ |+. ++||   +++++..+++. 
T Consensus       198 ~-----------~~~~~~~~Gv~~~~~~~v~---~~~~~~~~~~~~d~VilAtGa~~~~~l~i~G~~~~gV~~~~~~l~~  263 (485)
T TIGR01317       198 R-----------RIDLLSAEGIDFVTNTEIG---VDISADELKEQFDAVVLAGGATKPRDLPIPGRELKGIHYAMEFLPS  263 (485)
T ss_pred             H-----------HHHHHHhCCCEEECCCEeC---CccCHHHHHhhCCEEEEccCCCCCCcCCCCCcCCCCcEeHHHHHHH
Confidence            1           1255677899998876432   1122222346799999999998 777 8998   46666544331 


Q ss_pred             -----c----------cCCCCcEEEECCChHHHHHHHHHHhCC-CcEEEEEc-CcCCccC---------cH--HHHHHHH
Q psy14461        237 -----L----------GAWPGKTLVLGGSLMAVEIAATLNFLG-VPVTLVYS-RRLLKHF---------DQ--EMVRILL  288 (535)
Q Consensus       237 -----~----------~~~~k~vvViGgG~~g~e~A~~l~~~g-~~Vtlv~~-~~~l~~~---------~~--~~~~~~~  288 (535)
                           .          ...+++|+|||||++|+|+|..+.++| .+|+++++ +..+...         ..  ++....+
T Consensus       264 ~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~  343 (485)
T TIGR01317       264 ATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPKPPEARAKDNPWPEWPRVYRVDYAHE  343 (485)
T ss_pred             HhhhhccccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCCChhhcccccCCCccchhhhhHHHHH
Confidence                 0          124689999999999999998888887 47999987 6544211         11  1222334


Q ss_pred             HhhhcCCeEE--cceEEEEEEEeCCCcE-EEEE-----ecCC---------CCCceEEEcCEEEEccCCC-CCCCCCCcc
Q psy14461        289 SSLTKAGVSI--QCCVIEKVISSFDGMK-GVRG-----FHPE---------SKEPFADVFKTVVNAMEKK-FDFAALNLH  350 (535)
Q Consensus       289 ~~l~~~gV~i--~~~~v~~i~~~~~~~~-~v~~-----~~~~---------~G~~~~~~~D~vi~a~G~~-p~~~~l~l~  350 (535)
                      +..+..|+.+  ++..+.+|..++++++ .+++     ....         .|+++++++|.||+|+|+. |++.++  +
T Consensus       344 e~~~~~gv~~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~~~p~~~~~--~  421 (485)
T TIGR01317       344 EAAAHYGRDPREYSILTKEFIGDDEGKVTALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGFVGPEQILL--D  421 (485)
T ss_pred             hhhhhcCccceEEecCcEEEEEcCCCeEEEEEEEEEEeccCCCCCccceecCCceEEEECCEEEEccCcCCCccccc--c
Confidence            4444456643  5777888866422343 2332     1111         2345689999999999996 888876  6


Q ss_pred             ccCeeecCCCceE-cCCCCCcCCCCEEEeCCcCCCCCCcHHHHHHHHHHHHHHHhC
Q psy14461        351 HIGVDIKKKSYVV-CNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYG  405 (535)
Q Consensus       351 ~~gl~~~~~G~i~-vd~~~~T~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g  405 (535)
                      ..+++++++|++. +|++++|+.|+|||+|||+ .++.++..|+.+|+.||.+|..
T Consensus       422 ~~gl~~~~~G~i~~~~~~~~Ts~~gVfAaGD~~-~g~~~~~~Av~~G~~AA~~i~~  476 (485)
T TIGR01317       422 DFGVKKTRRGNISAGYDDYSTSIPGVFAAGDCR-RGQSLIVWAINEGRKAAAAVDR  476 (485)
T ss_pred             ccCcccCCCCCEEecCCCceECCCCEEEeeccC-CCcHHHHHHHHHHHHHHHHHHH
Confidence            7788888889885 4678999999999999999 7788889999999999999853

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=99.97  E-value=1.2e-29  Score=261.37  Aligned_cols=277  Identities=18%  Similarity=0.132  Sum_probs=196.6

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccc-cccccccccccchhhcccccccccccccCHHHHHHHHHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRK-KRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRF  167 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~-~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  167 (535)
                      .+|+|||+|++|+.+|......+.+|+|||+.+.+++.. ..++.+                    ..+...+.      
T Consensus        19 ~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~--------------------~~~~~~~~------   72 (352)
T PRK12770         19 KKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFGIPEF--------------------RIPIERVR------   72 (352)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeecCccc--------------------ccCHHHHH------
Confidence            568999999999999998888899999999988653221 111110                    01111111      


Q ss_pred             HHHHHHHHHHHHHhcCcEEEEeEEEEec-C------CE-----EEEceeEEEcceEEEeeCce-ecC-CCCC---Cceec
Q psy14461        168 CIRAKNDSMRELKALGIDIVRTAAAFTN-P------HT-----IKLSNRSVTGFNFLLAVERR-CLP-EPRN---SALIS  230 (535)
Q Consensus       168 ~~~~~~~~~~~~~~~gV~~~~g~~~~~~-~------~~-----v~~~~~~~~~d~lViATGs~-p~~-~i~G---~~v~~  230 (535)
                           .. ...+.+.+++++.++..... .      ..     +...+..+.||+||||||++ |.. ++||   ..+++
T Consensus        73 -----~~-~~~l~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs~~~~~~~ipg~~~~~v~~  146 (352)
T PRK12770         73 -----EG-VKELEEAGVVFHTRTKVCCGEPLHEEEGDEFVERIVSLEELVKKYDAVLIATGTWKSRKLGIPGEDLPGVYS  146 (352)
T ss_pred             -----HH-HHHHHhCCeEEecCcEEeeccccccccccccccccCCHHHHHhhCCEEEEEeCCCCCCcCCCCCccccCcee
Confidence                 11 12344569998887644221 1      01     11112347899999999994 666 8888   45666


Q ss_pred             hhhHHh-----------ccCC----CCcEEEECCChHHHHHHHHHHhCCCc-EEEEEc-CcCCccCcHHHHHHHHHhhhc
Q psy14461        231 ADDLFR-----------LGAW----PGKTLVLGGSLMAVEIAATLNFLGVP-VTLVYS-RRLLKHFDQEMVRILLSSLTK  293 (535)
Q Consensus       231 ~~~~~~-----------~~~~----~k~vvViGgG~~g~e~A~~l~~~g~~-Vtlv~~-~~~l~~~~~~~~~~~~~~l~~  293 (535)
                      ..++..           ....    +++++|||+|++|+|+|..|.+.|.+ |+++++ +.......    ....+.|++
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~~~~~----~~~~~~l~~  222 (352)
T PRK12770        147 ALEYLFRIRAAKLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINEAPAG----KYEIERLIA  222 (352)
T ss_pred             HHHHHHHhhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhhCCCC----HHHHHHHHH
Confidence            544321           1111    47999999999999999999999987 999998 53222121    233456888


Q ss_pred             CCeEE-cceEEEEEEEeCCCcEEEEEecC---------------CCCCceEEEcCEEEEccCCCCCCCCCCccc-cCeee
Q psy14461        294 AGVSI-QCCVIEKVISSFDGMKGVRGFHP---------------ESKEPFADVFKTVVNAMEKKFDFAALNLHH-IGVDI  356 (535)
Q Consensus       294 ~gV~i-~~~~v~~i~~~~~~~~~v~~~~~---------------~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~-~gl~~  356 (535)
                      +||++ ++..+++++.. +....|++.+.               .+|++.++++|.+++++|++|++.+.  .. .++++
T Consensus       223 ~gi~i~~~~~v~~i~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~~l~--~~~~g~~~  299 (352)
T PRK12770        223 RGVEFLELVTPVRIIGE-GRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTPPFA--KECLGIEL  299 (352)
T ss_pred             cCCEEeeccCceeeecC-CcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCchhh--hcccCcee
Confidence            99999 99999999754 22223443210               13455589999999999999998765  33 78888


Q ss_pred             cCCCceEcCCCCCcCCCCEEEeCCcCCCCCCcHHHHHHHHHHHHHHHhC
Q psy14461        357 KKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYG  405 (535)
Q Consensus       357 ~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g  405 (535)
                      +++|+|.||++++|+.|+|||+|||+ +.+.++..|+.||+.||.+|..
T Consensus       300 ~~~g~i~vd~~~~t~~~~vyaiGD~~-~~~~~~~~A~~~g~~aa~~i~~  347 (352)
T PRK12770        300 NRKGEIVVDEKHMTSREGVFAAGDVV-TGPSKIGKAIKSGLRAAQSIHE  347 (352)
T ss_pred             cCCCcEeeCCCcccCCCCEEEEcccc-cCcchHHHHHHHHHHHHHHHHH
Confidence            88899999999999999999999999 7788999999999999999864

>PRK13984 putative oxidoreductase; Provisional

Probab=99.97  E-value=1.6e-29  Score=277.99  Aligned_cols=329  Identities=19%  Similarity=0.161  Sum_probs=220.1

Q ss_pred             CCCccccccCCCCCCChhHHHH------------hhhcCCcEEEEeCCCchhhHHHH---------------HHHHH-h-
Q psy14461         31 CSPTASSCDLLPSFETPPAYIS------------RLSYENRILIFTHAVLREENARA---------------ERYLN-A-   81 (535)
Q Consensus        31 ~~~~~~~~~~~p~~~~l~~~~~------------~~i~~~~v~v~~k~~cp~~~~~~---------------k~~~~-~-   81 (535)
                      |-.+...|   |....++.++.            .+.+.|+...+..+.||+.|..+               ++... . 
T Consensus       190 Cg~C~~~C---P~~~~i~~~~~~i~~~~~~~a~~~~~~~np~~~~~g~vC~~~Ce~~C~~~~~~~~~~i~~~~~~~~~~~  266 (604)
T PRK13984        190 CGICTDTC---PAHMDIPQYIKAIYKDDLEEGLRWLYKTNPLSMVCGRVCTHKCETVCSIGHRGEPIAIRWLKRYIVDNV  266 (604)
T ss_pred             CCcccccC---CCCCCHHHHHHHHHcCCHHHHHHHHHhcCCccchhhCcCCchHHHhhcccCCCCCeEeCcHHHHHHhHH
Confidence            34455566   55556665544            34566888888899999888764               11110 0 


Q ss_pred             ----c------CCcceEEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhccccccccc
Q psy14461         82 ----R------GDRFAVLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALN  151 (535)
Q Consensus        82 ----~------~~~~~~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~  151 (535)
                          .      .....-.+++|||+|++|+.+|..+...+.+|+|+|+++.+++    .+.+  +++..           
T Consensus       267 ~~~~~~~~~~~~~~~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG----~~~~--~i~~~-----------  329 (604)
T PRK13984        267 PVEKYSEILDDEPEKKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGG----VMRY--GIPSY-----------  329 (604)
T ss_pred             HHcCcccccCCCcccCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCc----eEee--cCCcc-----------
Confidence                0      0011245789999999999999988888999999999986532    2211  01110           


Q ss_pred             ccccCHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEceeEEEcceEEEeeCce-ecC-CCCC---C
Q psy14461        152 VTIRNWNAATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAVERR-CLP-EPRN---S  226 (535)
Q Consensus       152 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~~~~~~d~lViATGs~-p~~-~i~G---~  226 (535)
                        .. ..++..+           ..+.++..|++++.++....   .+..+.....||+||||||+. |+. ++||   .
T Consensus       330 --~~-~~~~~~~-----------~~~~~~~~gv~~~~~~~v~~---~~~~~~~~~~yD~vilAtGa~~~r~l~i~G~~~~  392 (604)
T PRK13984        330 --RL-PDEALDK-----------DIAFIEALGVKIHLNTRVGK---DIPLEELREKHDAVFLSTGFTLGRSTRIPGTDHP  392 (604)
T ss_pred             --cC-CHHHHHH-----------HHHHHHHCCcEEECCCEeCC---cCCHHHHHhcCCEEEEEcCcCCCccCCCCCcCCc
Confidence              00 1112211           12456778999888764321   122222345799999999997 456 8999   4


Q ss_pred             ceechhhHHhc-----------cCCCCcEEEECCChHHHHHHHHHHhCCC------cEEEEEc---CcCCccCcHHHHHH
Q psy14461        227 ALISADDLFRL-----------GAWPGKTLVLGGSLMAVEIAATLNFLGV------PVTLVYS---RRLLKHFDQEMVRI  286 (535)
Q Consensus       227 ~v~~~~~~~~~-----------~~~~k~vvViGgG~~g~e~A~~l~~~g~------~Vtlv~~---~~~l~~~~~~~~~~  286 (535)
                      ++++..+++..           ...+++|+|||||++|+|+|..|.+++.      +|+++..   ...++....++   
T Consensus       393 gv~~a~~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~~~r~~~~~~~~~~e~---  469 (604)
T PRK13984        393 DVIQALPLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTSLERTFEEMPADMEEI---  469 (604)
T ss_pred             CeEeHHHHHHHHHhhhccCCCcCCCCCcEEEECCchHHHHHHHHHHhccccccCceEEEEeccccCcccCCCCHHHH---
Confidence            56766665431           1236899999999999999999998853      7888743   22344333332   


Q ss_pred             HHHhhhcCCeEE-cceEEEEEEEeCCCcE-EEEEec-----CC---------CCCceEEEcCEEEEccCCCCCCCCCCcc
Q psy14461        287 LLSSLTKAGVSI-QCCVIEKVISSFDGMK-GVRGFH-----PE---------SKEPFADVFKTVVNAMEKKFDFAALNLH  350 (535)
Q Consensus       287 ~~~~l~~~gV~i-~~~~v~~i~~~~~~~~-~v~~~~-----~~---------~G~~~~~~~D~vi~a~G~~p~~~~l~l~  350 (535)
                       .+ +.++||++ ++..++++..+ ++++ .|++..     ..         +|+++++++|.||+|+|++||++++..+
T Consensus       470 -~~-~~~~GV~i~~~~~~~~i~~~-~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~~~~l~~~  546 (604)
T PRK13984        470 -EE-GLEEGVVIYPGWGPMEVVIE-NDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAPDYSYLPEE  546 (604)
T ss_pred             -HH-HHHcCCEEEeCCCCEEEEcc-CCEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCCCChhhhhhh
Confidence             22 23579999 99888888654 3443 233321     01         2344589999999999999999876311


Q ss_pred             -ccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCCCcHHHHHHHHHHHHHHHhC
Q psy14461        351 -HIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYG  405 (535)
Q Consensus       351 -~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g  405 (535)
                       ..+++. ++|+|.||++++|++|+|||+||++ .++.+ ..|+++|+.||.+|..
T Consensus       547 ~~~~l~~-~~G~i~vd~~~~Ts~~gVfAaGD~~-~~~~~-v~Ai~~G~~AA~~I~~  599 (604)
T PRK13984        547 LKSKLEF-VRGRILTNEYGQTSIPWLFAGGDIV-HGPDI-IHGVADGYWAAEGIDM  599 (604)
T ss_pred             hccCccc-cCCeEEeCCCCccCCCCEEEecCcC-CchHH-HHHHHHHHHHHHHHHH
Confidence             123555 4788999999999999999999999 66654 6799999999999863

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=99.97  E-value=1.3e-28  Score=268.40  Aligned_cols=343  Identities=20%  Similarity=0.213  Sum_probs=233.5

Q ss_pred             hcchhhhcCCccccccccCCCccccccCCCCCCChhHHHHh------------hhcCCcEEEEeCCCchhhHHHH-----
Q psy14461         13 TSGLNAIHAIPSFHEAKTCSPTASSCDLLPSFETPPAYISR------------LSYENRILIFTHAVLREENARA-----   75 (535)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~------------~i~~~~v~v~~k~~cp~~~~~~-----   75 (535)
                      +.+..+.+ .|.|+.  ...++..+|   |...+++.|+..            +.+.|++.....+.||++|..+     
T Consensus        31 ~~~~~~~~-~~~~~~--~~~~C~~~C---P~~~~i~~~~~~~~~g~~~~a~~~~~~~np~~~~~grvc~~~ce~~C~r~~  104 (564)
T PRK12771         31 ATGPWRHK-CPVYVD--QTPPCNAAC---PAGEDIRGWLALVRGGDYEYAWRRLTKDNPFPAVMGRVCYHPCESGCNRGQ  104 (564)
T ss_pred             hccccccc-cccccC--CCCccccCC---CCCCcHHHHHHHHHCCCHHHHHHHHHHhCCcchHhhCcCCchhHHhccCCC
Confidence            34444433 465652  445666778   888888888664            4566888888899999888764     


Q ss_pred             ----------HHHHH----hcC------CcceEEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccc
Q psy14461         76 ----------ERYLN----ARG------DRFAVLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPV  135 (535)
Q Consensus        76 ----------k~~~~----~~~------~~~~~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~  135 (535)
                                ++...    ..+      ....-.+|+|||+||+|+.+|..+...+.+|+++|+.+.+++.    +.+  
T Consensus       105 ~~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~----l~~--  178 (564)
T PRK12771        105 VDDAVGINAVERFLGDYAIANGWKFPAPAPDTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGM----MRY--  178 (564)
T ss_pred             CCCCcCHHHHHHHHHHHHHHcCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCe----eee--
Confidence                      22210    000      0011246899999999999999888888899999998876432    211  


Q ss_pred             cccchhhcccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEceeEEEcceEEEee
Q psy14461        136 AMSDLELEQDSTSALNVTIRNWNAATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAV  215 (535)
Q Consensus       136 ~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~~~~~~d~lViAT  215 (535)
                      +++..             .+.. ++....           .+.+.+.|+++..+.....+   +........||+||+||
T Consensus       179 gip~~-------------~~~~-~~~~~~-----------l~~~~~~Gv~~~~~~~~~~~---~~~~~~~~~~D~Vi~At  230 (564)
T PRK12771        179 GIPAY-------------RLPR-EVLDAE-----------IQRILDLGVEVRLGVRVGED---ITLEQLEGEFDAVFVAI  230 (564)
T ss_pred             cCCCc-------------cCCH-HHHHHH-----------HHHHHHCCCEEEeCCEECCc---CCHHHHHhhCCEEEEee
Confidence            12211             1111 111111           13456689988776532111   11111224699999999


Q ss_pred             CceecC--CCCC---CceechhhHHhc------cCCCCcEEEECCChHHHHHHHHHHhCC-CcEEEEEc-Cc-CCccCcH
Q psy14461        216 ERRCLP--EPRN---SALISADDLFRL------GAWPGKTLVLGGSLMAVEIAATLNFLG-VPVTLVYS-RR-LLKHFDQ  281 (535)
Q Consensus       216 Gs~p~~--~i~G---~~v~~~~~~~~~------~~~~k~vvViGgG~~g~e~A~~l~~~g-~~Vtlv~~-~~-~l~~~~~  281 (535)
                      |+.+..  .++|   .+++...+++..      ...+++|+|||+|++|+++|..+.+++ .+|+++++ +. .++....
T Consensus       231 G~~~~~~~~i~g~~~~gv~~~~~~l~~~~~~~~~~~gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~~~~~~~~~~  310 (564)
T PRK12771        231 GAQLGKRLPIPGEDAAGVLDAVDFLRAVGEGEPPFLGKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRTREDMPAHDE  310 (564)
T ss_pred             CCCCCCcCCCCCCccCCcEEHHHHHHHhhccCCcCCCCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecCcccCCCCHH
Confidence            997543  7777   345555444421      234689999999999999999999998 67999988 43 3444444


Q ss_pred             HHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEE---ec---CC-------CCCceEEEcCEEEEccCCCCCCCCC
Q psy14461        282 EMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRG---FH---PE-------SKEPFADVFKTVVNAMEKKFDFAAL  347 (535)
Q Consensus       282 ~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~---~~---~~-------~G~~~~~~~D~vi~a~G~~p~~~~l  347 (535)
                      ++.     ...+.||++ ++..+.++..++++.+.+++   +.   ..       +|+++++++|.||+|+|+.|++.++
T Consensus       311 ~~~-----~a~~~GVki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p~~~~~  385 (564)
T PRK12771        311 EIE-----EALREGVEINWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDIDSAGL  385 (564)
T ss_pred             HHH-----HHHHcCCEEEecCCcEEEEcCCCCEEEEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCCCchhhh
Confidence            332     234579999 99999999765333322221   10   01       3555689999999999999998876


Q ss_pred             Cccc-cCeeecCCCceEcCC-CCCcCCCCEEEeCCcCCCCCCcHHHHHHHHHHHHHHHh
Q psy14461        348 NLHH-IGVDIKKKSYVVCNE-KDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLY  404 (535)
Q Consensus       348 ~l~~-~gl~~~~~G~i~vd~-~~~T~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~  404 (535)
                        +. .+++ +++|+|.+|+ +++|+.|+|||+||++ .++.++..|+.||+.||.+|.
T Consensus       386 --~~~~gl~-~~~G~i~vd~~~~~ts~~~Vfa~GD~~-~g~~~v~~Av~~G~~aA~~i~  440 (564)
T PRK12771        386 --ESVPGVE-VGRGVVQVDPNFMMTGRPGVFAGGDMV-PGPRTVTTAIGHGKKAARNID  440 (564)
T ss_pred             --hhccCcc-cCCCCEEeCCCCccCCCCCEEeccCcC-CCchHHHHHHHHHHHHHHHHH
Confidence              43 5677 7789999998 7899999999999999 778899999999999999984

>KOG0399|consensus

Probab=99.96  E-value=1.6e-29  Score=269.71  Aligned_cols=338  Identities=14%  Similarity=0.086  Sum_probs=231.8

Q ss_pred             CCccccccccCCCccccc---cCCCCCCCh------hHHHHhhhcCCcEEEEeCCCchhhHHHH----------------
Q psy14461         21 AIPSFHEAKTCSPTASSC---DLLPSFETP------PAYISRLSYENRILIFTHAVLREENARA----------------   75 (535)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~---~~~p~~~~l------~~~~~~~i~~~~v~v~~k~~cp~~~~~~----------------   75 (535)
                      .+||||..       +.|   |-+|.|+++      +..+..+.+.|++..|+.+.||++|.-+                
T Consensus      1690 gtpfc~~~-------~gcpl~n~ip~~nelvfk~~wk~al~~ll~tnnfpeftgrvcpapcegactlgiie~pv~iksie 1762 (2142)
T KOG0399|consen 1690 GTPFCQSD-------SGCPLGNIIPKFNELVFKNQWKEALEQLLETNNFPEFTGRVCPAPCEGACTLGIIEPPVGIKSIE 1762 (2142)
T ss_pred             CCccccCC-------CCCccccccccHHHHHHHHHHHHHHHHHHhhCCCccccCccCCCCcCcceeeecccCCccccchh
Confidence            57888752       335   448999888      4446678999999999999999999764                


Q ss_pred             -----HHHHHhcCCc-----ceEEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhccc
Q psy14461         76 -----ERYLNARGDR-----FAVLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQD  145 (535)
Q Consensus        76 -----k~~~~~~~~~-----~~~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~  145 (535)
                           +.+....=+.     -.-.+|.|||+||+|++||-++...++.|+++||.+.+    +++..|  +++       
T Consensus      1763 ~aiid~af~egwm~p~pp~~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~----ggll~y--gip------- 1829 (2142)
T KOG0399|consen 1763 CAIIDKAFEEGWMKPCPPAFRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRV----GGLLMY--GIP------- 1829 (2142)
T ss_pred             hHHHHHHHHhcCCccCCcccccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCc----Cceeee--cCC-------
Confidence                 1111100000     11246799999999999999999999999999999976    455555  255       


Q ss_pred             ccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEceeEEEcceEEEeeCce-ecC-CC
Q psy14461        146 STSALNVTIRNWNAATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAVERR-CLP-EP  223 (535)
Q Consensus       146 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~~~~~~d~lViATGs~-p~~-~i  223 (535)
                            +++.|.. +++++-           +++...||+|+.++   .-++.+.++...-.+|+||+|+||. |+. |+
T Consensus      1830 ------nmkldk~-vv~rrv-----------~ll~~egi~f~tn~---eigk~vs~d~l~~~~daiv~a~gst~prdlpv 1888 (2142)
T KOG0399|consen 1830 ------NMKLDKF-VVQRRV-----------DLLEQEGIRFVTNT---EIGKHVSLDELKKENDAIVLATGSTTPRDLPV 1888 (2142)
T ss_pred             ------ccchhHH-HHHHHH-----------HHHHhhCceEEeec---cccccccHHHHhhccCeEEEEeCCCCCcCCCC
Confidence                  4555654 444433           67888899999876   2345577666666799999999995 666 99


Q ss_pred             CC---CceechhhHHhc---------------cCCCCcEEEECCChHHHHHHHHHHhCCC-cEEEEEc----------Cc
Q psy14461        224 RN---SALISADDLFRL---------------GAWPGKTLVLGGSLMAVEIAATLNFLGV-PVTLVYS----------RR  274 (535)
Q Consensus       224 ~G---~~v~~~~~~~~~---------------~~~~k~vvViGgG~~g~e~A~~l~~~g~-~Vtlv~~----------~~  274 (535)
                      ||   ++++.+-+++..               ...+|+|+|||||++|.+|-..-.|+|+ .|.-++-          ++
T Consensus      1889 ~grd~kgv~fame~l~~ntk~lld~~~d~~~~~~~gkkvivigggdtg~dcigtsvrhg~~sv~n~ellp~pp~~ra~~n 1968 (2142)
T KOG0399|consen 1889 PGRDLKGVHFAMEFLEKNTKSLLDSVLDGNYISAKGKKVIVIGGGDTGTDCIGTSVRHGCKSVGNFELLPQPPPERAPDN 1968 (2142)
T ss_pred             CCccccccHHHHHHHHHhHHhhhccccccceeccCCCeEEEECCCCccccccccchhhccceecceeecCCCCcccCCCC
Confidence            99   566555554431               2357899999999999999999999986 4444432          34


Q ss_pred             CCccCcH---------HHHHHHHH----------hh-hcCCeEEcceEEEEE--EEeCCCcEEEEEecCCCCCceEEEcC
Q psy14461        275 LLKHFDQ---------EMVRILLS----------SL-TKAGVSIQCCVIEKV--ISSFDGMKGVRGFHPESKEPFADVFK  332 (535)
Q Consensus       275 ~l~~~~~---------~~~~~~~~----------~l-~~~gV~i~~~~v~~i--~~~~~~~~~v~~~~~~~G~~~~~~~D  332 (535)
                      ++|+++.         +..+..-+          .+ ...+-++++-+..++  ++++.+.+.+.-   ..++++.++||
T Consensus      1969 pwpqwprvfrvdygh~e~~~~~g~dpr~y~vltk~f~~~~~g~v~gl~~vrvew~k~~~g~w~~~e---i~~see~~ead 2045 (2142)
T KOG0399|consen 1969 PWPQWPRVFRVDYGHAEAKEHYGSDPRTYSVLTKRFIGDDNGNVTGLETVRVEWEKDDKGRWQMKE---INNSEEIIEAD 2045 (2142)
T ss_pred             CCccCceEEEeecchHHHHHHhCCCcceeeeeeeeeeccCCCceeeEEEEEEEEEecCCCceEEEE---cCCcceeeecc
Confidence            4554431         22111111          11 111111222222222  222223333221   24566789999


Q ss_pred             EEEEccCCCCCCCCCCccccCeeecCCCceEcC-CCCCcCCCCEEEeCCcCCCCCCcHHHHHHHHHHHHHHHh
Q psy14461        333 TVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCN-EKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLY  404 (535)
Q Consensus       333 ~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd-~~~~T~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~  404 (535)
                      +||+|.|+......+ .++.+++.|+++.|.+- +.+.|++++|||+|||. .+..++.+|+++||.+|+.+-
T Consensus      2046 lv~lamgf~gpe~~~-~~~~~~~~d~rsni~t~~~~y~t~v~~vfaagdcr-rgqslvvwai~egrq~a~~vd 2116 (2142)
T KOG0399|consen 2046 LVILAMGFVGPEKSV-IEQLNLKTDPRSNILTPKDSYSTDVAKVFAAGDCR-RGQSLVVWAIQEGRQAARQVD 2116 (2142)
T ss_pred             eeeeeccccCcchhh-hhhcCcccCccccccCCCccccccccceeeccccc-CCceEEEEEehhhhHHHHHHH
Confidence            999999998665554 37788999999888764 56899999999999999 888999999999999999864

>KOG0404|consensus

Probab=99.95  E-value=1.7e-27  Score=216.00  Aligned_cols=286  Identities=15%  Similarity=0.098  Sum_probs=209.8

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRFC  168 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  168 (535)
                      -+|+|||+|||+-.+|++..+...+-+|||-...-...+++.+.    -...+.++|+|.    ..+...+++++++   
T Consensus         9 e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLt----TTT~veNfPGFP----dgi~G~~l~d~mr---   77 (322)
T KOG0404|consen    9 ENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLT----TTTDVENFPGFP----DGITGPELMDKMR---   77 (322)
T ss_pred             eeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceee----eeeccccCCCCC----cccccHHHHHHHH---
Confidence            47899999999999999999999999999965432222233221    122345566663    3445566777665   


Q ss_pred             HHHHHHHHHHHHhcCcEEEEeEEEEec----CCEEEEceeEEEcceEEEeeCceecC-CCCC--Cc-eec--------hh
Q psy14461        169 IRAKNDSMRELKALGIDIVRTAAAFTN----PHTIKLSNRSVTGFNFLLAVERRCLP-EPRN--SA-LIS--------AD  232 (535)
Q Consensus       169 ~~~~~~~~~~~~~~gV~~~~g~~~~~~----~~~v~~~~~~~~~d~lViATGs~p~~-~i~G--~~-v~~--------~~  232 (535)
                              .+.++.|.+++..++..++    +..+..+.+.+.+|.||+|||+..++ .+||  +. +|.        ++
T Consensus        78 --------kqs~r~Gt~i~tEtVskv~~sskpF~l~td~~~v~~~avI~atGAsAkRl~~pg~ge~~fWqrGiSaCAVCD  149 (322)
T KOG0404|consen   78 --------KQSERFGTEIITETVSKVDLSSKPFKLWTDARPVTADAVILATGASAKRLHLPGEGEGEFWQRGISACAVCD  149 (322)
T ss_pred             --------HHHHhhcceeeeeehhhccccCCCeEEEecCCceeeeeEEEecccceeeeecCCCCcchHHhcccchhhccc
Confidence                    5667789999988876543    34565566889999999999999998 8888  22 221        11


Q ss_pred             hHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeC
Q psy14461        233 DLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSF  310 (535)
Q Consensus       233 ~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~  310 (535)
                      .+..+ -..|-.+|||||++++|-|.+|.+.+.+|++++| +++..  ...++   ++..+..+|++ +++.+.+..++ 
T Consensus       150 Gaapi-frnk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~fRA--s~~Mq---~ra~~npnI~v~~nt~~~ea~gd-  222 (322)
T KOG0404|consen  150 GAAPI-FRNKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHFRA--SKIMQ---QRAEKNPNIEVLYNTVAVEALGD-  222 (322)
T ss_pred             Ccchh-hcCCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhhhhhH--HHHHH---HHHhcCCCeEEEechhhhhhccC-
Confidence            11111 1247799999999999999999999999999999 76543  12222   23344668999 99988887764 


Q ss_pred             CCcE-EEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCC-CCCcCCCCEEEeCCcCCCCCCc
Q psy14461        311 DGMK-GVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNE-KDQTSVGNIFAVGGIVHGKPNN  388 (535)
Q Consensus       311 ~~~~-~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~-~~~T~~~~IyA~GD~~~~~~~~  388 (535)
                      .+.+ .+.+++...|++..++++-++.++|..|++.++  +. ++++|++|+|++-+ ...||+|++||+||+......+
T Consensus       223 ~~~l~~l~ikn~~tge~~dl~v~GlFf~IGH~Pat~~l--~g-qve~d~~GYi~t~pgts~TsvpG~FAAGDVqD~kyRQ  299 (322)
T KOG0404|consen  223 GKLLNGLRIKNVKTGEETDLPVSGLFFAIGHSPATKFL--KG-QVELDEDGYIVTRPGTSLTSVPGVFAAGDVQDKKYRQ  299 (322)
T ss_pred             cccccceEEEecccCcccccccceeEEEecCCchhhHh--cC-ceeeccCceEEeccCcccccccceeeccccchHHHHH
Confidence            2222 355555568888899999999999999999998  44 79999999999984 5679999999999998545567


Q ss_pred             HHHHHHHHHHHHHHH
Q psy14461        389 ASMAAISARLIIERL  403 (535)
Q Consensus       389 ~~~A~~~g~~aa~~i  403 (535)
                      +..|...|.+||...
T Consensus       300 AvTaAgsGciaaldA  314 (322)
T KOG0404|consen  300 AVTAAGSGCIAALDA  314 (322)
T ss_pred             HHhhhccchhhhhhH
Confidence            777888888877543

>PLN02852 ferredoxin-NADP+ reductase

Probab=99.95  E-value=2.3e-26  Score=242.37  Aligned_cols=282  Identities=15%  Similarity=0.063  Sum_probs=192.7

Q ss_pred             EEEEeeCCccHHHHHHHHHhh--CCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQT--NQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKR  166 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~--~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  166 (535)
                      .+|+|||+||||+.+|..+..  .+.+|+|||+.+.++    |+..|  ++..             .......+.     
T Consensus        27 ~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pg----Glvr~--gvaP-------------~~~~~k~v~-----   82 (491)
T PLN02852         27 LHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPF----GLVRS--GVAP-------------DHPETKNVT-----   82 (491)
T ss_pred             CcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCc----ceEee--ccCC-------------CcchhHHHH-----
Confidence            568999999999999987654  689999999998653    33322  1110             000111111     


Q ss_pred             HHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEceeEEEcceEEEeeCcee-cC-CCCC---CceechhhHHhc----
Q psy14461        167 FCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAVERRC-LP-EPRN---SALISADDLFRL----  237 (535)
Q Consensus       167 ~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~~~~~~d~lViATGs~p-~~-~i~G---~~v~~~~~~~~~----  237 (535)
                            ..+...++..+|+++.+.. .  ++.+++++....||+||||||+.+ +. +|||   ++++++.+++.+    
T Consensus        83 ------~~~~~~~~~~~v~~~~nv~-v--g~dvtl~~L~~~yDaVIlAtGa~~~~~l~IpG~d~~gV~~a~~fl~~~ng~  153 (491)
T PLN02852         83 ------NQFSRVATDDRVSFFGNVT-L--GRDVSLSELRDLYHVVVLAYGAESDRRLGIPGEDLPGVLSAREFVWWYNGH  153 (491)
T ss_pred             ------HHHHHHHHHCCeEEEcCEE-E--CccccHHHHhhhCCEEEEecCCCCCCCCCCCCCCCCCeEEHHHHHHHhhcc
Confidence                  1122445667888776532 1  344555554457999999999986 55 8999   678888777431    


Q ss_pred             ------c---CCCCcEEEECCChHHHHHHHHHHhC--------------------CC-cEEEEEc-Cc-CCccCcHHHH-
Q psy14461        238 ------G---AWPGKTLVLGGSLMAVEIAATLNFL--------------------GV-PVTLVYS-RR-LLKHFDQEMV-  284 (535)
Q Consensus       238 ------~---~~~k~vvViGgG~~g~e~A~~l~~~--------------------g~-~Vtlv~~-~~-~l~~~~~~~~-  284 (535)
                            .   ..+++|+|||+|++|+|+|..|.+.                    |. +|+++.| .. -.+...+++. 
T Consensus       154 ~d~~~~~~~~~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RRg~~~~~ft~~Elre  233 (491)
T PLN02852        154 PDCVHLPPDLKSSDTAVVLGQGNVALDCARILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRRGPVQAACTAKELRE  233 (491)
T ss_pred             hhhhhhhhcccCCCEEEEECCCHHHHHHHHHHHhCccccccccccHHHHHHHhhCCCCEEEEEEcCChHhCCCCHHHHHH
Confidence                  1   2468999999999999999998875                    64 6999998 42 1111111111 


Q ss_pred             ------------------------------------HHHHHhhhc---------CCeEE-cceEEEEEEEeC--CCcE-E
Q psy14461        285 ------------------------------------RILLSSLTK---------AGVSI-QCCVIEKVISSF--DGMK-G  315 (535)
Q Consensus       285 ------------------------------------~~~~~~l~~---------~gV~i-~~~~v~~i~~~~--~~~~-~  315 (535)
                                                          +.+.+...+         ++|.+ +...+++|...+  ++++ .
T Consensus       234 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~l~~~a~~~~~~~~~~~~~v~~~f~~sP~ei~~~~~~~~~v~~  313 (491)
T PLN02852        234 LLGLKNVRVRIKEADLTLSPEDEEELKASRPKRRVYELLSKAAAAGKCAPSGGQRELHFVFFRNPTRFLDSGDGNGHVAG  313 (491)
T ss_pred             HhccCCCceeechhhhccccchhhhhccchhhHHHHHHHHHHHhhcccccCCCCceEEEEccCCCeEEEccCCCCCcEEE
Confidence                                                112222112         57999 999999997421  2343 3


Q ss_pred             EEEecC--------------CCCCceEEEcCEEEEccCCC--CCCCC-CCccccCeeecCCCceEcCCCCCcCCCCEEEe
Q psy14461        316 VRGFHP--------------ESKEPFADVFKTVVNAMEKK--FDFAA-LNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAV  378 (535)
Q Consensus       316 v~~~~~--------------~~G~~~~~~~D~vi~a~G~~--p~~~~-l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~  378 (535)
                      +++..+              .+|+++++++|.||.++|++  |...+ +. ...++..+++|+|.+|+.++|+.|||||+
T Consensus       314 l~~~~~~l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~~~~p~~~l~f~-~~~gv~~n~~G~V~~d~~~~T~ipGvyAa  392 (491)
T PLN02852        314 VKLERTVLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGYKSLPVDGLPFD-HKRGVVPNVHGRVLSSASGADTEPGLYVV  392 (491)
T ss_pred             EEEEEeecCCCcccCCcccCCCCCEEEEECCEEEEeecCCCCCCCCCccc-cCcCeeECCCceEEeCCCCccCCCCEEEe
Confidence            444311              14666789999999999998  55553 21 33467778899999998889999999999


Q ss_pred             CCcCCCCCC-cHHHHHHHHHHHHHHHhC
Q psy14461        379 GGIVHGKPN-NASMAAISARLIIERLYG  405 (535)
Q Consensus       379 GD~~~~~~~-~~~~A~~~g~~aa~~i~g  405 (535)
                      |||. .+|. ++..++.+|+.+|.+|+.
T Consensus       393 GDi~-~Gp~gvI~t~~~dA~~ta~~i~~  419 (491)
T PLN02852        393 GWLK-RGPTGIIGTNLTCAEETVASIAE  419 (491)
T ss_pred             eeEe-cCCCCeeeecHhhHHHHHHHHHH
Confidence            9999 5554 888999999999999985

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=99.95  E-value=1e-25  Score=236.79  Aligned_cols=377  Identities=19%  Similarity=0.118  Sum_probs=267.2

Q ss_pred             EEeeCCccHHHHHHH--HHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHHH
Q psy14461         91 LDRIGDEGILLEEEL--KRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRFC  168 (535)
Q Consensus        91 v~iiG~G~aG~~~al--~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  168 (535)
                      ++|+|+|.+|+.++.  ++.....+++++.++....|..+.++.+   +...             ..+...+...     
T Consensus         1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~---~~~~-------------~~~~~~~~~~-----   59 (415)
T COG0446           1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLY---VGGG-------------IASLEDLRYP-----   59 (415)
T ss_pred             CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCCCCccchH---Hhcc-------------cCCHHHhccc-----
Confidence            478999999999886  4555778999999999888888877665   3321             0111111110     


Q ss_pred             HHHHHHHHHHHHhcCcEEEEeE-EEEec--CCEEEEceeEEEcceEEEeeCceecC-CCCC-Ccee---chhhHHhcc--
Q psy14461        169 IRAKNDSMRELKALGIDIVRTA-AAFTN--PHTIKLSNRSVTGFNFLLAVERRCLP-EPRN-SALI---SADDLFRLG--  238 (535)
Q Consensus       169 ~~~~~~~~~~~~~~gV~~~~g~-~~~~~--~~~v~~~~~~~~~d~lViATGs~p~~-~i~G-~~v~---~~~~~~~~~--  238 (535)
                            .. ...+.++++..++ +..++  .+.+.+.+.++.||++++|||++|.. +... ..++   ...+...+.  
T Consensus        60 ------~~-~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~yd~LvlatGa~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (415)
T COG0446          60 ------PR-FNRATGIDVRTGTEVTSIDPENKVVLLDDGEIEYDYLVLATGARPRPPPISDWEGVVTLRLREDAEALKGG  132 (415)
T ss_pred             ------ch-hHHhhCCEEeeCCEEEEecCCCCEEEECCCcccccEEEEcCCCcccCCCccccCceEEECCHHHHHHHHHH
Confidence                  00 1135578877754 44444  56777766689999999999999988 5111 2232   333333322  


Q ss_pred             -CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCc-HHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcE
Q psy14461        239 -AWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFD-QEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMK  314 (535)
Q Consensus       239 -~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~-~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~  314 (535)
                       ...++++|+|+|++|+|+|..++++|.+|++++. +++++.+. +++.+.+.+.++++||++ .+..+.+|+... +..
T Consensus       133 ~~~~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~-~~~  211 (415)
T COG0446         133 AEPPKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKG-NTL  211 (415)
T ss_pred             HhccCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhhHHHHHHHHHHHHHCCcEEEeCCceEEEEccc-Ccc
Confidence             2258999999999999999999999999999999 99988777 899999999999999999 999999998752 222


Q ss_pred             E---EEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccC-eeecCCCceEcCCCCCcC-CCCEEEeCCcCCC---C-
Q psy14461        315 G---VRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIG-VDIKKKSYVVCNEKDQTS-VGNIFAVGGIVHG---K-  385 (535)
Q Consensus       315 ~---v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~g-l~~~~~G~i~vd~~~~T~-~~~IyA~GD~~~~---~-  385 (535)
                      .   +..   .++.  .+++|.+++++|.+||+.+.  ...+ .....+|+|.||++++|+ .++|||+|||+..   . 
T Consensus       212 ~~~~~~~---~~~~--~~~~d~~~~~~g~~p~~~l~--~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~GD~~~~~~~~~  284 (415)
T COG0446         212 VVERVVG---IDGE--EIKADLVIIGPGERPNVVLA--NDALPGLALAGGAVLVDERGGTSKDPDVYAAGDVAEIPAAET  284 (415)
T ss_pred             eeeEEEE---eCCc--EEEeeEEEEeecccccHHHH--hhCccceeccCCCEEEccccccCCCCCEEeccceEeeecccC
Confidence            2   233   2566  89999999999999997665  3332 134567899999999997 9999999998851   0 


Q ss_pred             -----CCcHHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEE-EEEEecCCccccc
Q psy14461        386 -----PNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLV-IYKSSYPTFDNLL  459 (535)
Q Consensus       386 -----~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~-~~~~~~~~~~~~~  459 (535)
                           ......|..++++++.++.+. ..........+...++......|+++.  .+. .   +. +............
T Consensus       285 ~~~~~~~~~~~a~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~-~---~~~~~~~~~~~~~~~~  357 (415)
T COG0446         285 GKGGRIALWAIAVAAGRIAAENIAGA-LRIPGLLGTVISDVGDLCAASTGLTEG--KER-G---IDVVLVVSGGKDPRAH  357 (415)
T ss_pred             CceeeeechhhHhhhhHHHHHHhccc-cccccccCceEEEEcCeEEEEecCCcc--ccc-c---eeeeEEEeccCccccc
Confidence                 224457999999999999986 222222223345667888999999998  222 2   22 1111121111111


Q ss_pred             CCCCCcchhhhhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcC
Q psy14461        460 DPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDG  534 (535)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~  534 (535)
                       ...                     .......|+.++.++++++|++. -. ....++.++.++..+.++.++..
T Consensus       358 -~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~  408 (415)
T COG0446         358 -LYP---------------------GAELVGIKLVGDADTGRILGGQE-LE-VLKRIGALALAIGLGDTVAELDA  408 (415)
T ss_pred             -ccC---------------------CCCeEEEEEEEcCcccceehhhh-HH-HHhhhhhhhhhhhhcCchhhhhh
Confidence             000                     12355889999999999999999 44 77899999999999988887653

>KOG2495|consensus

Probab=99.95  E-value=1.3e-26  Score=229.45  Aligned_cols=278  Identities=14%  Similarity=0.116  Sum_probs=203.8

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRFC  168 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  168 (535)
                      .+|+|+|.|.+|++..-...+...+|+||+...++-+.+ .+|..+                 ...++...+.+..+   
T Consensus        56 k~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTP-LLpS~~-----------------vGTve~rSIvEPIr---  114 (491)
T KOG2495|consen   56 KRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTP-LLPSTT-----------------VGTVELRSIVEPIR---  114 (491)
T ss_pred             ceEEEEcCchHHHHHHHhccccccceEEeccccceEEee-ccCCcc-----------------ccceeehhhhhhHH---
Confidence            567999999998888777777889999999998875542 233321                 12233333443332   


Q ss_pred             HHHHHHHHHHHHhc--CcEEEEeEEEEec--CCEEEEce---------eEEEcceEEEeeCceecC-CCCC--Cceec--
Q psy14461        169 IRAKNDSMRELKAL--GIDIVRTAAAFTN--PHTIKLSN---------RSVTGFNFLLAVERRCLP-EPRN--SALIS--  230 (535)
Q Consensus       169 ~~~~~~~~~~~~~~--gV~~~~g~~~~~~--~~~v~~~~---------~~~~~d~lViATGs~p~~-~i~G--~~v~~--  230 (535)
                              ....+.  ++.++..+...+|  .+.|.++.         ..+.||+||+|+|+.+.. .|||  ++.+.  
T Consensus       115 --------~i~r~k~~~~~y~eAec~~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TFgipGV~e~~~FLK  186 (491)
T KOG2495|consen  115 --------AIARKKNGEVKYLEAECTKIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTFGIPGVEENAHFLK  186 (491)
T ss_pred             --------HHhhccCCCceEEecccEeecccccEEEEeeeccCCCcceeeecccEEEEeccCCCCCCCCCchhhchhhhh
Confidence                    333332  6777777766654  45666532         578999999999999999 9999  43322  


Q ss_pred             -hhhHHhc-------------cC-------CCCcEEEECCChHHHHHHHHHHhC--------------CCcEEEEEc-Cc
Q psy14461        231 -ADDLFRL-------------GA-------WPGKTLVLGGSLMAVEIAATLNFL--------------GVPVTLVYS-RR  274 (535)
Q Consensus       231 -~~~~~~~-------------~~-------~~k~vvViGgG~~g~e~A~~l~~~--------------g~~Vtlv~~-~~  274 (535)
                       ..|+.+.             ..       .--++||||||++|+|+|..|+..              -.+||+++. ++
T Consensus       187 Ev~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~  266 (491)
T KOG2495|consen  187 EVEDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADH  266 (491)
T ss_pred             hhhHHHHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchh
Confidence             1222211             01       113689999999999999988753              258999999 99


Q ss_pred             CCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccC
Q psy14461        275 LLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIG  353 (535)
Q Consensus       275 ~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~g  353 (535)
                      +|+.|+..+.++.++.+.+.||++ .++.|+.++.+   .+.+..   .+|+..++++-+++|++|..|..-.   ..+.
T Consensus       267 iL~mFdkrl~~yae~~f~~~~I~~~~~t~Vk~V~~~---~I~~~~---~~g~~~~iPYG~lVWatG~~~rp~~---k~lm  337 (491)
T KOG2495|consen  267 ILNMFDKRLVEYAENQFVRDGIDLDTGTMVKKVTEK---TIHAKT---KDGEIEEIPYGLLVWATGNGPRPVI---KDLM  337 (491)
T ss_pred             HHHHHHHHHHHHHHHHhhhccceeecccEEEeecCc---EEEEEc---CCCceeeecceEEEecCCCCCchhh---hhHh
Confidence            999999999999999999999999 99999998743   344443   3788789999999999998776432   2222


Q ss_pred             eeecCCC--ceEcCCCCCc-CCCCEEEeCCcCC--CCCCcHHHHHHHHHHHHHHHh
Q psy14461        354 VDIKKKS--YVVCNEKDQT-SVGNIFAVGGIVH--GKPNNASMAAISARLIIERLY  404 (535)
Q Consensus       354 l~~~~~G--~i~vd~~~~T-~~~~IyA~GD~~~--~~~~~~~~A~~~g~~aa~~i~  404 (535)
                      -.+++.|  .+.||++||. +.+||||+|||+.  +.+.++.+|.+||.++|+++-
T Consensus       338 ~~i~e~~rr~L~vDE~LrV~G~~nvfAiGDca~~~~~~~tAQVA~QqG~yLAk~fn  393 (491)
T KOG2495|consen  338 KQIDEQGRRGLAVDEWLRVKGVKNVFAIGDCADQRGLKPTAQVAEQQGAYLAKNFN  393 (491)
T ss_pred             hcCCccCceeeeeeceeeccCcCceEEeccccccccCccHHHHHHHHHHHHHHHHH
Confidence            3344555  7999999996 8999999999993  445588899999999999973

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=99.93  E-value=7.1e-26  Score=236.39  Aligned_cols=331  Identities=19%  Similarity=0.114  Sum_probs=233.6

Q ss_pred             cCCCCCCCh------hHHHHhhhcCCcEEEEeCCCchhh--HHHH---------------HHHHH-----------hcCC
Q psy14461         39 DLLPSFETP------PAYISRLSYENRILIFTHAVLREE--NARA---------------ERYLN-----------ARGD   84 (535)
Q Consensus        39 ~~~p~~~~l------~~~~~~~i~~~~v~v~~k~~cp~~--~~~~---------------k~~~~-----------~~~~   84 (535)
                      +.+|.|..+      +..++.+.+.|....++.++||..  |..+               +....           ....
T Consensus        40 ~~IP~~~~lv~~g~~~~a~~~i~~tn~~p~~~gRvcp~~~~ceg~cv~~~~~~~v~i~~le~~i~d~~~~~g~i~~~~~~  119 (457)
T COG0493          40 NDIPEPIGLVREGVDHEAIKLIHKTNNLPAITGRVCPLGNLCEGACVLGIEELPVNIGALERAIGDKADREGWIPGELPG  119 (457)
T ss_pred             CcCCCHHHHHhcCCcHHHHHHHHHhCCCccccCccCCCCCceeeeeeeccCCCchhhhhHHHHHhhHHHHhCCCCCCCCC
Confidence            446766665      333567888999999999999965  5432               11110           1111


Q ss_pred             cceEEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHH
Q psy14461         85 RFAVLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLI  164 (535)
Q Consensus        85 ~~~~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~  164 (535)
                      ...-.+|.|||+||+|+++|..+...++.||++|+.+..+    ++..|  +++.+             ..+ .++.++.
T Consensus       120 ~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~G----Gll~y--GIP~~-------------kl~-k~i~d~~  179 (457)
T COG0493         120 SRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDG----GLLLY--GIPDF-------------KLP-KDILDRR  179 (457)
T ss_pred             CCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCc----eeEEe--cCchh-------------hcc-chHHHHH
Confidence            2233678999999999999999999999999999998763    33332  13321             111 1233322


Q ss_pred             HHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEceeEEEcceEEEeeCc-eecC-CCCC---CceechhhHHhc--
Q psy14461        165 KRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAVER-RCLP-EPRN---SALISADDLFRL--  237 (535)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~~~~~~d~lViATGs-~p~~-~i~G---~~v~~~~~~~~~--  237 (535)
                                 .+.|++.|++|+.+...   ++.+++....-.||+++||||+ .|+. ++||   ++++.+.+++..  
T Consensus       180 -----------i~~l~~~Gv~~~~~~~v---G~~it~~~L~~e~Dav~l~~G~~~~~~l~i~g~d~~gv~~A~dfL~~~~  245 (457)
T COG0493         180 -----------LELLERSGVEFKLNVRV---GRDITLEELLKEYDAVFLATGAGKPRPLDIPGEDAKGVAFALDFLTRLN  245 (457)
T ss_pred             -----------HHHHHHcCeEEEEcceE---CCcCCHHHHHHhhCEEEEeccccCCCCCCCCCcCCCcchHHHHHHHHHH
Confidence                       36788889999887632   3345555444567999999998 5666 8999   578877777632  


Q ss_pred             ----c-----C----CCCcEEEECCChHHHHHHHHHHhCCC-cEEEEEc--Cc-CCccCcHHHHHHHHHhhhcCCeEE-c
Q psy14461        238 ----G-----A----WPGKTLVLGGSLMAVEIAATLNFLGV-PVTLVYS--RR-LLKHFDQEMVRILLSSLTKAGVSI-Q  299 (535)
Q Consensus       238 ----~-----~----~~k~vvViGgG~~g~e~A~~l~~~g~-~Vtlv~~--~~-~l~~~~~~~~~~~~~~l~~~gV~i-~  299 (535)
                          .     .    .+++|+|||||.++++++....++|+ +|+.+++  .. -...++....+...+...++|+.. +
T Consensus       246 ~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~eeg~~~~~  325 (457)
T COG0493         246 KEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALRLGAKSVTCFYREDRDDETNEWPTWAAQLEVRSAGEEGVERLP  325 (457)
T ss_pred             HHHhcccccccCCCCCCCeEEEECCCCCHHHHHHHHhhcCCeEEEEeccccccccCCcccccchhhhhhhhhhcCCcccc
Confidence                1     1    12899999999999999999999997 8888864  11 112222222344455667788888 8


Q ss_pred             ceEEEEEEEeCCCcEE-EEEe---cC-------------CCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCce
Q psy14461        300 CCVIEKVISSFDGMKG-VRGF---HP-------------ESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYV  362 (535)
Q Consensus       300 ~~~v~~i~~~~~~~~~-v~~~---~~-------------~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i  362 (535)
                      .....++..+++|++. +.+.   ..             ..|+++.+++|.|++|+|+.|+.........++..+.+|.+
T Consensus       326 ~~~~~~~~~~e~GrV~~~~~~~~~~~~~~~~~~r~~p~~v~gs~~~~~aD~v~~aig~~~~~~~~~~~~~~~~~~~~g~i  405 (457)
T COG0493         326 FVQPKAFIGNEGGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDKRGRI  405 (457)
T ss_pred             cCCceeEeecCCCcEeeeecccccccCcccccccccCccccCceEEehHHHHHHHhccCCCcccccccccccccCCCCce
Confidence            8888888876556553 2221   10             13677899999999999999886553223336778889999


Q ss_pred             EcCCCC-CcCCCCEEEeCCcCCCCCCcHHHHHHHHHHHHHHHh
Q psy14461        363 VCNEKD-QTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLY  404 (535)
Q Consensus       363 ~vd~~~-~T~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~  404 (535)
                      .+|+.+ +|+.|++||.||+. .+..++.+|+.+||.+|+.|-
T Consensus       406 ~~~~~~~~ts~~~vfa~gD~~-~g~~~vv~ai~eGr~aak~i~  447 (457)
T COG0493         406 KVDENLQQTSIPGVFAGGDAV-RGAALVVWAIAEGREAAKAID  447 (457)
T ss_pred             ecccccccccCCCeeeCceec-cchhhhhhHHhhchHHHHhhh
Confidence            999998 99999999999999 668899999999999999875

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=1.7e-25  Score=215.20  Aligned_cols=288  Identities=15%  Similarity=0.111  Sum_probs=198.6

Q ss_pred             eEEEEEeeCCccHHHHHHHHHhhCCCeEE-EEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHH
Q psy14461         87 AVLYLDRIGDEGILLEEELKRQTNQRRDE-LQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIK  165 (535)
Q Consensus        87 ~~~~v~iiG~G~aG~~~al~~~~~~~~V~-lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~  165 (535)
                      ..++|.|+|+||||-++|++..+.+.+.= +-||-.   ++    .....+|-++         .+.+..+.+++....+
T Consensus       210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aerfG---GQ----vldT~~IENf---------Isv~~teGpkl~~ale  273 (520)
T COG3634         210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFG---GQ----VLDTMGIENF---------ISVPETEGPKLAAALE  273 (520)
T ss_pred             CCceEEEEcCCcchhHHHHHHHhhcchhhhhhhhhC---Ce----eccccchhhe---------eccccccchHHHHHHH
Confidence            45899999999999999999888775443 334321   11    1110011111         1123345556666555


Q ss_pred             HHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEce-eEEEcceEEEeeCceecC-CCCC------Cc---eechhhH
Q psy14461        166 RFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSN-RSVTGFNFLLAVERRCLP-EPRN------SA---LISADDL  234 (535)
Q Consensus       166 ~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~-~~~~~d~lViATGs~p~~-~i~G------~~---v~~~~~~  234 (535)
                      .++.+...++....+...++  ... .-.+-..|++.+ -.+.++.+|||||++.+. .+||      ++   +-+++.-
T Consensus       274 ~Hv~~Y~vDimn~qra~~l~--~a~-~~~~l~ev~l~nGavLkaktvIlstGArWRn~nvPGE~e~rnKGVayCPHCDGP  350 (520)
T COG3634         274 AHVKQYDVDVMNLQRASKLE--PAA-VEGGLIEVELANGAVLKARTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDGP  350 (520)
T ss_pred             HHHhhcCchhhhhhhhhcce--ecC-CCCccEEEEecCCceeccceEEEecCcchhcCCCCchHHHhhCCeeeCCCCCCc
Confidence            44444333332222222221  000 001123566654 679999999999999998 9999      12   2233333


Q ss_pred             HhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhc-CCeEE-cceEEEEEEEeCC
Q psy14461        235 FRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTK-AGVSI-QCCVIEKVISSFD  311 (535)
Q Consensus       235 ~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~-~gV~i-~~~~v~~i~~~~~  311 (535)
                      +   -.+|+|+|||||++|+|+|..|+-.-..||+++- +.+-.  |.    .+++.++. .++++ ++...++|.++ +
T Consensus       351 L---F~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eLkA--D~----VLq~kl~sl~Nv~ii~na~Ttei~Gd-g  420 (520)
T COG3634         351 L---FKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPELKA--DA----VLQDKLRSLPNVTIITNAQTTEVKGD-G  420 (520)
T ss_pred             c---cCCceEEEECCCcchHHHHHhHHhhhheeeeeecchhhhh--HH----HHHHHHhcCCCcEEEecceeeEEecC-C
Confidence            2   2369999999999999999999988889999986 44321  22    33444433 58999 99999999986 3


Q ss_pred             CcE-EEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCCCcHH
Q psy14461        312 GMK-GVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNAS  390 (535)
Q Consensus       312 ~~~-~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~~~~~  390 (535)
                      .++ -+.+.+..+|+++.++-+-|++-+|-.||++||  +.. ++++++|.|.||....||+|+|||+|||+....+++.
T Consensus       421 ~kV~Gl~Y~dr~sge~~~l~LeGvFVqIGL~PNT~WL--kg~-vel~~rGEIivD~~g~TsvpGvFAAGD~T~~~yKQII  497 (520)
T COG3634         421 DKVTGLEYRDRVSGEEHHLELEGVFVQIGLLPNTEWL--KGA-VELNRRGEIIVDARGETNVPGVFAAGDCTTVPYKQII  497 (520)
T ss_pred             ceecceEEEeccCCceeEEEeeeeEEEEecccChhHh--hch-hhcCcCccEEEecCCCcCCCceeecCcccCCccceEE
Confidence            444 366666678888889999999999999999998  555 8999999999999999999999999999955567788


Q ss_pred             HHHHHHHHHHHHHhCC
Q psy14461        391 MAAISARLIIERLYGM  406 (535)
Q Consensus       391 ~A~~~g~~aa~~i~g~  406 (535)
                      .|+.+|..|+.+.+..
T Consensus       498 IamG~GA~AaL~AFDy  513 (520)
T COG3634         498 IAMGEGAKASLSAFDY  513 (520)
T ss_pred             EEecCcchhhhhhhhh
Confidence            8999999888877653

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=99.91  E-value=8.5e-23  Score=234.79  Aligned_cols=269  Identities=13%  Similarity=0.043  Sum_probs=182.9

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHH
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRF  167 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  167 (535)
                      ..+|+|||+||||+++|+.....+.+|+|+|+++.+++.    .++.   ...           ....+..++...    
T Consensus       163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~----~~~~---~~~-----------~~g~~~~~~~~~----  220 (985)
T TIGR01372       163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGS----LLSE---AET-----------IDGKPAADWAAA----  220 (985)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCe----eecc---ccc-----------cCCccHHHHHHH----
Confidence            468999999999999999999999999999999876432    2220   000           001111111111    


Q ss_pred             HHHHHHHHHHHHHhc-CcEEEEeEEE-EecC-CEEEE----------------ce--eEEEcceEEEeeCceecC-CCCC
Q psy14461        168 CIRAKNDSMRELKAL-GIDIVRTAAA-FTNP-HTIKL----------------SN--RSVTGFNFLLAVERRCLP-EPRN  225 (535)
Q Consensus       168 ~~~~~~~~~~~~~~~-gV~~~~g~~~-~~~~-~~v~~----------------~~--~~~~~d~lViATGs~p~~-~i~G  225 (535)
                             ....++.. +|+++.++.. .+.. ..+..                .+  .++.||+||||||+.++. ++||
T Consensus       221 -------~~~~l~~~~~v~v~~~t~V~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~~pipG  293 (985)
T TIGR01372       221 -------TVAELTAMPEVTLLPRTTAFGYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERPLVFAN  293 (985)
T ss_pred             -------HHHHHhcCCCcEEEcCCEEEEEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcCCCCCC
Confidence                   12334444 5887765422 2211 11110                01  268999999999999998 9998


Q ss_pred             ---CceechhhHHhc----c-CCCCcEEEECCChHHHHHHHHHHhCCC-cEEEEEc-CcCCccCcHHHHHHHHHhhhcCC
Q psy14461        226 ---SALISADDLFRL----G-AWPGKTLVLGGSLMAVEIAATLNFLGV-PVTLVYS-RRLLKHFDQEMVRILLSSLTKAG  295 (535)
Q Consensus       226 ---~~v~~~~~~~~~----~-~~~k~vvViGgG~~g~e~A~~l~~~g~-~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~g  295 (535)
                         +++++...+..+    . ..+++|+|||+|++|+|+|..|++.|. .|+++++ +.+.        ..+.+.+++.|
T Consensus       294 ~~~pgV~~~~~~~~~l~~~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~~--------~~l~~~L~~~G  365 (985)
T TIGR01372       294 NDRPGVMLAGAARTYLNRYGVAPGKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADVS--------PEARAEARELG  365 (985)
T ss_pred             CCCCCcEEchHHHHHHHhhCcCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcchh--------HHHHHHHHHcC
Confidence               567766443322    1 246899999999999999999999995 5788876 5432        23556788899


Q ss_pred             eEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccC--eeecCC--CceEcCCCCCc
Q psy14461        296 VSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIG--VDIKKK--SYVVCNEKDQT  370 (535)
Q Consensus       296 V~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~g--l~~~~~--G~i~vd~~~~T  370 (535)
                      |++ +++.++++..+ +....|++.. .+|+..++++|.|++++|++||++++  ..++  +..++.  +++.     .|
T Consensus       366 V~i~~~~~v~~i~g~-~~v~~V~l~~-~~g~~~~i~~D~V~va~G~~Pnt~L~--~~lg~~~~~~~~~~~~~~-----~t  436 (985)
T TIGR01372       366 IEVLTGHVVAATEGG-KRVSGVAVAR-NGGAGQRLEADALAVSGGWTPVVHLF--SQRGGKLAWDAAIAAFLP-----GD  436 (985)
T ss_pred             CEEEcCCeEEEEecC-CcEEEEEEEe-cCCceEEEECCEEEEcCCcCchhHHH--HhcCCCeeeccccCceec-----CC
Confidence            999 99999999864 2222455542 13444589999999999999999876  4444  333321  2221     37


Q ss_pred             CCCCEEEeCCcCCCCCCcHHHHHHHHHHHHHHHh
Q psy14461        371 SVGNIFAVGGIVHGKPNNASMAAISARLIIERLY  404 (535)
Q Consensus       371 ~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~  404 (535)
                      +.|+||++||++ +. ..+..|+.+|+.||..|+
T Consensus       437 ~v~gVyaaGD~~-g~-~~~~~A~~eG~~Aa~~i~  468 (985)
T TIGR01372       437 AVQGCILAGAAN-GL-FGLAAALADGAAAGAAAA  468 (985)
T ss_pred             CCCCeEEeeccC-Cc-cCHHHHHHHHHHHHHHHH
Confidence            899999999998 54 466679999999999985

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=99.87  E-value=1e-20  Score=208.77  Aligned_cols=305  Identities=12%  Similarity=0.007  Sum_probs=186.5

Q ss_pred             HHhhhcCCcEEEEeC-CCchhhHHHH--------------HHHHHh-----------------c---------CCcceEE
Q psy14461         51 ISRLSYENRILIFTH-AVLREENARA--------------ERYLNA-----------------R---------GDRFAVL   89 (535)
Q Consensus        51 ~~~~i~~~~v~v~~k-~~cp~~~~~~--------------k~~~~~-----------------~---------~~~~~~~   89 (535)
                      +..+.++||....+. +.|| .|..+              |+...+                 .         .....-.
T Consensus       306 l~ii~~~NP~p~~~G~RVCp-~CE~aC~r~~dePV~I~~ler~i~d~~~~~~~~~e~y~~~~~~~~~~~~~~~~~~~tgK  384 (1028)
T PRK06567        306 LAIIVIDNPMVAATGHRICN-DCSKACIYQKQDPVNIPLIESNILEETLKLPYGLEIYLLLTRWNPLNIYAPLPKEPTNY  384 (1028)
T ss_pred             HHHHHHhCCChHhhCCccCc-chHHHhcCCCCCCeehhHHHHHHhhhhhhhcccccccccccccccccccCCCCCCCCCC
Confidence            344678899988887 9999 79875              332211                 0         0112335


Q ss_pred             EEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccc--------cccccccccccchhhccc---ccccccccccCHH
Q psy14461         90 YLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRK--------KRRLYYPVAMSDLELEQD---STSALNVTIRNWN  158 (535)
Q Consensus        90 ~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~--------~~l~~~~~~i~~~~~~~~---~~~~~~~~~~~~~  158 (535)
                      +|+|||+||||+.+|..+...+++|||||+.+..+...        ... +.+. +.   .+.+   |........++|.
T Consensus       385 KVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~~~~~~~i~~~~~-~~~~-L~---er~p~~~GG~~~yGIp~R~~  459 (1028)
T PRK06567        385 NILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLPFDVHKPIKFWHE-YKNL-LS---ERMPRGFGGVAEYGITVRWD  459 (1028)
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccccccccccchhhh-hccc-hh---hhccccCCcccccCccccch
Confidence            89999999999999999988999999999864321100        000 0000 00   0000   0000001112332


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-cCcEEEEeEEEEecCCEEEEce-eEEEcceEEEeeCc-eecC-CCCC---Cceech
Q psy14461        159 AATKLIKRFCIRAKNDSMRELKA-LGIDIVRTAAAFTNPHTIKLSN-RSVTGFNFLLAVER-RCLP-EPRN---SALISA  231 (535)
Q Consensus       159 ~l~~~~~~~~~~~~~~~~~~~~~-~gV~~~~g~~~~~~~~~v~~~~-~~~~~d~lViATGs-~p~~-~i~G---~~v~~~  231 (535)
                      +      ..++.    ....++. .+++++.|..   -+.++++++ ....||+|+||||+ +|+. +|||   .+++++
T Consensus       460 k------~~l~~----i~~il~~g~~v~~~~gv~---lG~dit~edl~~~gyDAV~IATGA~kpr~L~IPGeda~GV~sA  526 (1028)
T PRK06567        460 K------NNLDI----LRLILERNNNFKYYDGVA---LDFNITKEQAFDLGFDHIAFCIGAGQPKVLDIENFEAKGVKTA  526 (1028)
T ss_pred             H------HHHHH----HHHHHhcCCceEEECCeE---ECccCCHHHHhhcCCCEEEEeCCCCCCCCCCCCCccCCCeEEH
Confidence            1      11111    1122222 3466555653   223344444 45789999999999 6888 9999   678888


Q ss_pred             hhHHhcc--------------CCCCcEEEECCChHHHHHHHHHHh-----------------------------------
Q psy14461        232 DDLFRLG--------------AWPGKTLVLGGSLMAVEIAATLNF-----------------------------------  262 (535)
Q Consensus       232 ~~~~~~~--------------~~~k~vvViGgG~~g~e~A~~l~~-----------------------------------  262 (535)
                      .+++...              ..+++|+|||||++|+|+|....+                                   
T Consensus       527 ~DfL~~l~~~~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~~~~~~~~d~eia~~f~~h~r~  606 (1028)
T PRK06567        527 SDFLMTLQSGGAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYIEKDLTEEDKEIAEEFIAHAKL  606 (1028)
T ss_pred             HHHHHHHhhcccccccccCcccCCCCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhhhhhcccccHHHHHHHHHHHHh
Confidence            8865431              135799999999999999984332                                   


Q ss_pred             ----------------CCCcEEEEEc-C-cCCccC---cHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEE-EEEe
Q psy14461        263 ----------------LGVPVTLVYS-R-RLLKHF---DQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKG-VRGF  319 (535)
Q Consensus       263 ----------------~g~~Vtlv~~-~-~~l~~~---~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~-v~~~  319 (535)
                                      .|. |++++| . .-+|..   .+++..     ..++||.+ .+..+.+|..+++++++ +++.
T Consensus       607 ~g~~~~~~~v~~l~~~~G~-VtIvYRr~~~empA~~~~~eEv~~-----A~eEGV~f~~~~~P~~i~~d~~g~v~~l~~~  680 (1028)
T PRK06567        607 FKEAKNNEELRKVFNKLGG-ATVYYRGRLQDSPAYKLNHEELIY-----ALALGVDFKENMQPLRINVDKYGHVESVEFE  680 (1028)
T ss_pred             hcchhccchhhhhhccCCc-eEEEecCChhhCCCCCCCHHHHHH-----HHHcCcEEEecCCcEEEEecCCCeEEEEEEE
Confidence                            222 888888 2 334432   333322     23569999 99999999765445543 3332


Q ss_pred             cC------------CCC-------------CceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCC
Q psy14461        320 HP------------ESK-------------EPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGN  374 (535)
Q Consensus       320 ~~------------~~G-------------~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~  374 (535)
                      ..            ..+             ++.+++||.||+|+|..||+..+.               .+..+-++.++
T Consensus       681 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~~~~~~~~~---------------~~~s~~~d~~~  745 (1028)
T PRK06567        681 NRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGIENNTQFDE---------------DKYSYFGDCNP  745 (1028)
T ss_pred             EEecccccccccccccccccCCcCcccCCCccccccCCEEEEecccCCcccccc---------------cccccccCCCC
Confidence            10            012             557899999999999999997630               01123345566


Q ss_pred             EEEeCCcCCCCCCcHHHHHHHHHHHHHHHh
Q psy14461        375 IFAVGGIVHGKPNNASMAAISARLIIERLY  404 (535)
Q Consensus       375 IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~  404 (535)
                      +|+.         .+..|+.+|+.++.+|.
T Consensus       746 ~f~G---------tvv~A~as~k~~~~~i~  766 (1028)
T PRK06567        746 KYSG---------SVVKALASSKEGYDAIN  766 (1028)
T ss_pred             cccc---------HHHHHHHHHHhHHHHHH
Confidence            6664         56789999999999994

>KOG1346|consensus

Probab=99.87  E-value=7e-22  Score=194.15  Aligned_cols=312  Identities=16%  Similarity=0.140  Sum_probs=212.6

Q ss_pred             EEEEeeCCccHHHHHH--HHHhhCCCeEEEEecCCcccccccccc----cccccccchhhccccccc--------ccccc
Q psy14461         89 LYLDRIGDEGILLEEE--LKRQTNQRRDELQERGSHLSFRKKRRL----YYPVAMSDLELEQDSTSA--------LNVTI  154 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~a--l~~~~~~~~V~lie~~~~~~~~~~~l~----~~~~~i~~~~~~~~~~~~--------~~~~~  154 (535)
                      +...|||+|.+..+++  ++....+..|.+|..++.++|.+..|.    +|+-.-+....++..+.-        .+...
T Consensus       179 vp~liigggtaAfaa~rai~s~da~A~vl~iseepelPYmRPPLSKELW~~~dpn~~k~lrfkqwsGkeRsiffepd~Ff  258 (659)
T KOG1346|consen  179 VPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPYMRPPLSKELWWYGDPNSAKKLRFKQWSGKERSIFFEPDGFF  258 (659)
T ss_pred             CceeEEcCCchhhhcccccccCCCCceEEeeccCccCcccCCCcchhceecCCCChhhheeecccCCccceeEecCCcce
Confidence            4557899988866654  455567788999999999888876432    221000000001111000        00001


Q ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEeE-EEEec--CCEEEEce-eEEEcceEEEeeCceecC-C-CCC---
Q psy14461        155 RNWNAATKLIKRFCIRAKNDSMRELKALGIDIVRTA-AAFTN--PHTIKLSN-RSVTGFNFLLAVERRCLP-E-PRN---  225 (535)
Q Consensus       155 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~-~~~~~--~~~v~~~~-~~~~~d~lViATGs~p~~-~-i~G---  225 (535)
                      ++.+++                .....-||-+..|. ++.++  ++.|.+++ .++.||+++||||.+|+. + +..   
T Consensus       259 vspeDL----------------p~~~nGGvAvl~G~kvvkid~~d~~V~LnDG~~I~YdkcLIATG~~Pk~l~~~~~A~~  322 (659)
T KOG1346|consen  259 VSPEDL----------------PKAVNGGVAVLRGRKVVKIDEEDKKVILNDGTTIGYDKCLIATGVRPKKLQVFEEASE  322 (659)
T ss_pred             eChhHC----------------cccccCceEEEeccceEEeecccCeEEecCCcEeehhheeeecCcCcccchhhhhcCH
Confidence            111110                11233488888886 33333  55677765 899999999999999997 4 332   


Q ss_pred             ------CceechhhHHhccC---CCCcEEEECCChHHHHHHHHHHhC----CCcEEEEEc-CcCC-ccCcHHHHHHHHHh
Q psy14461        226 ------SALISADDLFRLGA---WPGKTLVLGGSLMAVEIAATLNFL----GVPVTLVYS-RRLL-KHFDQEMVRILLSS  290 (535)
Q Consensus       226 ------~~v~~~~~~~~~~~---~~k~vvViGgG~~g~e~A~~l~~~----g~~Vtlv~~-~~~l-~~~~~~~~~~~~~~  290 (535)
                            ..+....|+.++++   ..++|.|||+|++|.|+|..|.+.    |.+|+.+-. ...+ .-+++.+++.-.+.
T Consensus       323 evk~kit~fr~p~DF~rlek~~aek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~kiLPeyls~wt~ek  402 (659)
T KOG1346|consen  323 EVKQKITYFRYPADFKRLEKGLAEKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNMEKILPEYLSQWTIEK  402 (659)
T ss_pred             HhhhheeEEecchHHHHHHHhhhhcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChhhhhHHHHHHHHHHH
Confidence                  23456778776643   247999999999999999999765    678888766 4333 45677788888899


Q ss_pred             hhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCC-CceEcCCCC
Q psy14461        291 LTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKK-SYVVCNEKD  368 (535)
Q Consensus       291 l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~-G~i~vd~~~  368 (535)
                      +++.||.+ .+..|.++... .+++.+.+   .||.  ++..|+|++|+|-.||+++.  +..|+++|++ |.+.||..+
T Consensus       403 ir~~GV~V~pna~v~sv~~~-~~nl~lkL---~dG~--~l~tD~vVvavG~ePN~ela--~~sgLeiD~~lGGfrvnaeL  474 (659)
T KOG1346|consen  403 IRKGGVDVRPNAKVESVRKC-CKNLVLKL---SDGS--ELRTDLVVVAVGEEPNSELA--EASGLEIDEKLGGFRVNAEL  474 (659)
T ss_pred             HHhcCceeccchhhhhhhhh-ccceEEEe---cCCC--eeeeeeEEEEecCCCchhhc--ccccceeecccCcEEeehee
Confidence            99999999 99999998766 35667777   4898  89999999999999999987  7788998874 778999888


Q ss_pred             CcCCCCEEEeCCcCC------CCCCcHH--HHHHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCcee
Q psy14461        369 QTSVGNIFAVGGIVH------GKPNNAS--MAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFG  427 (535)
Q Consensus       369 ~T~~~~IyA~GD~~~------~~~~~~~--~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a  427 (535)
                      +.. .|||++||++.      |.-...|  .|.-.||.|++||.|... ++..+.+.|... +|+++
T Consensus       475 ~ar-~NvwvAGdaacF~D~~LGrRRVehhdhavvSGRLAGENMtgAak-py~hqsmFWsdl-gP~ig  538 (659)
T KOG1346|consen  475 KAR-ENVWVAGDAACFEDGVLGRRRVEHHDHAVVSGRLAGENMTGAAK-PYKHQSMFWSDL-GPEIG  538 (659)
T ss_pred             ecc-cceeeecchhhhhcccccceeccccccceeeceecccccccccC-Cccccceeeecc-Ccccc
Confidence            754 79999999874      1111222  488889999999998543 333333444433 34443

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=99.82  E-value=2.8e-18  Score=181.64  Aligned_cols=285  Identities=10%  Similarity=0.017  Sum_probs=170.7

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccccccccc-------------------ccc---cccchhhcccc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLY-------------------YPV---AMSDLELEQDS  146 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~-------------------~~~---~i~~~~~~~~~  146 (535)
                      .+|+|||+|++|+.+|..+...+.+|+|||+++.+++...-.+.                   |..   .++...-.+..
T Consensus        11 ~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f~d   90 (461)
T PLN02172         11 QHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGYRD   90 (461)
T ss_pred             CCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccCCC
Confidence            56799999999999999888889999999999876533211000                   000   00000000111


Q ss_pred             ccccc---------ccccCHHHHHHHHHHHHHHHHHHHHHHHHhcCcE--EEEe-EEEEec--C--CEEEEce-----eE
Q psy14461        147 TSALN---------VTIRNWNAATKLIKRFCIRAKNDSMRELKALGID--IVRT-AAAFTN--P--HTIKLSN-----RS  205 (535)
Q Consensus       147 ~~~~~---------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gV~--~~~g-~~~~~~--~--~~v~~~~-----~~  205 (535)
                      +....         ...+...++.++.+           ...+..+++  +..+ +|..++  .  .+|++.+     .+
T Consensus        91 fp~~~~~~~~~~~~~~fp~~~ev~~YL~-----------~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~  159 (461)
T PLN02172         91 FPFVPRFDDESRDSRRYPSHREVLAYLQ-----------DFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKD  159 (461)
T ss_pred             CCCCcccccccCcCCCCCCHHHHHHHHH-----------HHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEE
Confidence            11000         11122333444443           444455655  3333 233322  2  2444431     24


Q ss_pred             EEcceEEEeeC--ceecC-CCCC-C----ceechhhHHhcc-CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcC
Q psy14461        206 VTGFNFLLAVE--RRCLP-EPRN-S----ALISADDLFRLG-AWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRL  275 (535)
Q Consensus       206 ~~~d~lViATG--s~p~~-~i~G-~----~v~~~~~~~~~~-~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~  275 (535)
                      ..||+||+|||  +.|+. ++|| +    ..+++.++.... ..+|+|+|||+|.+|+|+|..|++.+.+|++++| ..+
T Consensus       160 ~~~d~VIvAtG~~~~P~~P~ipG~~~f~G~~iHs~~yr~~~~~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~~~  239 (461)
T PLN02172        160 EIFDAVVVCNGHYTEPNVAHIPGIKSWPGKQIHSHNYRVPDPFKNEVVVVIGNFASGADISRDIAKVAKEVHIASRASES  239 (461)
T ss_pred             EEcCEEEEeccCCCCCcCCCCCCcccCCceEEEecccCCccccCCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeeccc
Confidence            67999999999  67887 8888 2    233444443222 2468999999999999999999999999999998 533


Q ss_pred             CccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccC-
Q psy14461        276 LKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIG-  353 (535)
Q Consensus       276 l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~g-  353 (535)
                      ...          ..+......+ .+..|..+..  ++  .|+++   ||+  .+++|.||+|||++|+.++|  +..+ 
T Consensus       240 ~~~----------~~~~~~~~~v~~~~~I~~~~~--~g--~V~f~---DG~--~~~~D~Ii~~TGy~~~~pfL--~~~~~  298 (461)
T PLN02172        240 DTY----------EKLPVPQNNLWMHSEIDTAHE--DG--SIVFK---NGK--VVYADTIVHCTGYKYHFPFL--ETNGY  298 (461)
T ss_pred             ccc----------ccCcCCCCceEECCcccceec--CC--eEEEC---CCC--CccCCEEEECCcCCcccccc--Ccccc
Confidence            210          1111122344 5555665543  23  36674   787  68899999999999999987  3322 


Q ss_pred             eeecCCCceEcCCC-CCcC-CCCEEEeCCcCCCCCCcHHHHHHHHHHHHHHHhCCC
Q psy14461        354 VDIKKKSYVVCNEK-DQTS-VGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQ  407 (535)
Q Consensus       354 l~~~~~G~i~vd~~-~~T~-~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g~~  407 (535)
                      +..+++.-...-++ +-.. .|+++.+|=..  .....+.+..|++.+|+-+.|+.
T Consensus       299 i~v~~~~v~~Ly~~~f~~~~~p~LafiG~~~--~~~~f~~~E~Qa~~~a~v~sG~~  352 (461)
T PLN02172        299 MRIDENRVEPLYKHVFPPALAPGLSFIGLPA--MGIQFVMFEIQSKWVAAVLSGRV  352 (461)
T ss_pred             eeeCCCcchhhHHhhcCCCCCCcEEEEeccc--cccCchhHHHHHHHHHHHHcCCC
Confidence            33332210011111 1223 48999999543  23345678999999999998864

>PF02852 Pyr_redox_dim: Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; InterPro: IPR004099 This entry represents a dimerisation domain that is usually found at the C-terminal of both class I and class II oxidoreductases, as well as in NADH oxidases and peroxidases [, , ]

Probab=99.78  E-value=8.7e-19  Score=149.24  Aligned_cols=95  Identities=29%  Similarity=0.388  Sum_probs=83.2

Q ss_pred             CcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcchhhhhhccCCcccccccccCcceEEEEEE
Q psy14461        416 LPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVC  495 (535)
Q Consensus       416 ~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~  495 (535)
                      +|+++|++|++|+||+||+||++.+.  ++++....+....+.. ..                      +++.||+||++
T Consensus         1 vP~~vft~p~ia~vGlte~~a~~~g~--~~~~~~~~~~~~~~~~-~~----------------------~~~~g~~Kli~   55 (110)
T PF02852_consen    1 VPTVVFTDPEIASVGLTEEEARKQGI--DYEVVTVPFKSNDRAR-YY----------------------PETEGFVKLIF   55 (110)
T ss_dssp             CEEEEESSSEEEEEES-HHHHHHHTS--GEEEEEEEEGGEHHHH-HT----------------------TTTEEEEEEEE
T ss_pred             CCEEEECCCceEEEccCHHHHHhccC--ceeeeeecccccchhc-cc----------------------CCcceeeEEEE
Confidence            69999999999999999999999955  6888888887766654 11                      14789999999


Q ss_pred             ECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461        496 LKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT  535 (535)
Q Consensus       496 ~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~  535 (535)
                      |++|++|||+|++|++|.|+|+.++++|++++|+++|.++
T Consensus        56 d~~t~~IlGa~~vg~~a~e~I~~~~~ai~~~~t~~~l~~~   95 (110)
T PF02852_consen   56 DKKTGRILGAQIVGPNASELINELALAIQNGLTVEDLADD   95 (110)
T ss_dssp             ETTTTBEEEEEEEETTHHHHHHHHHHHHHTTSBHHHHHTS
T ss_pred             EeeccceeeeeeecCchHHHHHHHHHHHHcCCCHHHHhCC
Confidence            9999999999999999999999999999999999998753

; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0045454 cell redox homeostasis, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3II4_B 2A8X_A 2BC0_B 2BC1_B 2W0H_A 2X50_B 2JK6_A 2YAU_A 2EQ9_E 2EQ6_B ....

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=99.71  E-value=2.1e-15  Score=162.02  Aligned_cols=300  Identities=12%  Similarity=0.058  Sum_probs=155.1

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccc--------cccccc---cccchhhccccccc--cccccc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKR--------RLYYPV---AMSDLELEQDSTSA--LNVTIR  155 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~--------l~~~~~---~i~~~~~~~~~~~~--~~~~~~  155 (535)
                      .+|+|||+|++|++++-..+..+.++++||+++.+++...-        .+.|+.   .++.+.-.+.++..  -.+..+
T Consensus         2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f~   81 (531)
T PF00743_consen    2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDFP   81 (531)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSSE
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCCC
Confidence            36899999999999998888889999999999987544210        001100   01111111222211  112244


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEec------CCEEEEce----eEEEcceEEEeeCc--eecCC-
Q psy14461        156 NWNAATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTN------PHTIKLSN----RSVTGFNFLLAVER--RCLPE-  222 (535)
Q Consensus       156 ~~~~l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~------~~~v~~~~----~~~~~d~lViATGs--~p~~~-  222 (535)
                      ...++.++.+.+.+.+...  . .-+.+-++..  ++..+      ..+|+++.    .+..||+||+|||-  .|..| 
T Consensus        82 ~~~~v~~Yl~~Ya~~f~L~--~-~I~fnt~V~~--v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~  156 (531)
T PF00743_consen   82 SHSEVLEYLESYAEHFGLR--K-HIRFNTEVVS--VERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPE  156 (531)
T ss_dssp             BHHHHHHHHHHHHHHTTGG--G-GEETSEEEEE--EEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB--
T ss_pred             CHHHHHHHHHHHHhhhCCc--c-eEEEccEEeE--eeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCCh
Confidence            5677888887776654321  0 0111222221  11111      13455532    45679999999995  56552 


Q ss_pred             --CCC-----CceechhhHHhcc-CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc--CcCCccCc------------
Q psy14461        223 --PRN-----SALISADDLFRLG-AWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS--RRLLKHFD------------  280 (535)
Q Consensus       223 --i~G-----~~v~~~~~~~~~~-~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~--~~~l~~~~------------  280 (535)
                        +||     ..++++.++.... -.+|+|+|||+|.+|+++|..|++...+|++..|  ..++|...            
T Consensus       157 ~~~~G~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~wv~pr~~~~G~P~D~~~~~  236 (531)
T PF00743_consen  157 PSFPGLEKFKGEIIHSKDYRDPEPFKGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGAWVLPRYWDNGYPFDMVFST  236 (531)
T ss_dssp             ---CTGGGHCSEEEEGGG--TGGGGTTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC----------------------
T ss_pred             hhhhhhhcCCeeEEccccCcChhhcCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecccccccccccccccccccccc
Confidence              788     3477788776543 3479999999999999999999999999999887  33333211            


Q ss_pred             -----------HHHHHHH-HHhhh------cCCeE------------------------E-cceEEEEEEEeCCCcEEEE
Q psy14461        281 -----------QEMVRIL-LSSLT------KAGVS------------------------I-QCCVIEKVISSFDGMKGVR  317 (535)
Q Consensus       281 -----------~~~~~~~-~~~l~------~~gV~------------------------i-~~~~v~~i~~~~~~~~~v~  317 (535)
                                 ..+.+.+ .+.+.      ..|+.                        + ....|+++.+     -.|.
T Consensus       237 R~~~~l~~~lp~~~~~~~~~~~l~~~~~~~~~gl~p~~~~~~~~~~ind~l~~~i~~G~i~vk~~I~~~~~-----~~v~  311 (531)
T PF00743_consen  237 RFSSFLQKNLPESLSNWLLEKKLNKRFDHENYGLKPKHRFFSQHPTINDELPNRIRSGRIKVKPDIKRFTE-----NSVI  311 (531)
T ss_dssp             --------------------------------------------------------------EE-EEEE-S-----SEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-----cccc
Confidence                       0011111 01110      01111                        0 1111222221     1245


Q ss_pred             EecCCCCCceE-EEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCC---CcCCCCEEEeCCcCCCCCCcHHHHH
Q psy14461        318 GFHPESKEPFA-DVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKD---QTSVGNIFAVGGIVHGKPNNASMAA  393 (535)
Q Consensus       318 ~~~~~~G~~~~-~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~---~T~~~~IyA~GD~~~~~~~~~~~A~  393 (535)
                      +   .||+  + .++|.||+|||++...++|.  ..-+... ++.+..-.++   .-..|.+..+|=+. ......+.+.
T Consensus       312 F---~DGs--~~e~vD~II~~TGY~~~fpFL~--~~~~~~~-~~~~~LYk~vfp~~~~~ptLafIG~~~-~~g~~fp~~E  382 (531)
T PF00743_consen  312 F---EDGS--TEEDVDVIIFCTGYKFSFPFLD--ESLIKVD-DNRVRLYKHVFPPNLDHPTLAFIGLVQ-PFGSIFPIFE  382 (531)
T ss_dssp             E---TTSE--EEEE-SEEEE---EE---TTB---TTTT-S--SSSSSEETTTEETETTSTTEEESS-SB-SSS-HHHHHH
T ss_pred             c---cccc--cccccccccccccccccccccc--ccccccc-ccccccccccccccccccccccccccc-cccccccccc
Confidence            5   3776  4 46999999999999988873  3223322 2333333332   12458999999775 3223556799


Q ss_pred             HHHHHHHHHHhCCC
Q psy14461        394 ISARLIIERLYGMQ  407 (535)
Q Consensus       394 ~~g~~aa~~i~g~~  407 (535)
                      .|++.+|+-+.|..
T Consensus       383 lQArw~a~v~sG~~  396 (531)
T PF00743_consen  383 LQARWAARVFSGRV  396 (531)
T ss_dssp             HHHHHHHHHHTTSS
T ss_pred             cccccccccccccc
Confidence            99999999998864

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=99.70  E-value=5.3e-17  Score=153.45  Aligned_cols=174  Identities=18%  Similarity=0.202  Sum_probs=115.5

Q ss_pred             EEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHHHH
Q psy14461         90 YLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRFCI  169 (535)
Q Consensus        90 ~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  169 (535)
                      +|+|||+|++|+.+|......+.+|+|+|+.+..++....++..   ..                   ............
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~---~~-------------------~~~~~~~~~~~~   58 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSP---LL-------------------VEIAPHRHEFLP   58 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHH---HH-------------------HHHHHHHHHHHH
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEEEeccccccccccccccc---cc-------------------cccccccccccc
Confidence            58999999999999999999999999999988654433322221   00                   000000000000


Q ss_pred             HHH-HHHHHHHHhcCcEEEE-eEEEEe--cCCE-------EEE----ceeEEEcceEEEeeCceecC-CCCC-C------
Q psy14461        170 RAK-NDSMRELKALGIDIVR-TAAAFT--NPHT-------IKL----SNRSVTGFNFLLAVERRCLP-EPRN-S------  226 (535)
Q Consensus       170 ~~~-~~~~~~~~~~gV~~~~-g~~~~~--~~~~-------v~~----~~~~~~~d~lViATGs~p~~-~i~G-~------  226 (535)
                       .. ..+.+.++..++++.. ..+..+  ..+.       +..    +..++.||+||||||+.|.. ++|| +      
T Consensus        59 -~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i~g~~~~~~~~  137 (201)
T PF07992_consen   59 -ARLFKLVDQLKNRGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNIPGEEVAYFLR  137 (201)
T ss_dssp             -HHHGHHHHHHHHHTHEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESSTTTTTECBTT
T ss_pred             -ccccccccccccceEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCccccceeecCCCccccccc
Confidence             00 0223344556777732 333222  2332       211    12689999999999999988 8888 2      


Q ss_pred             ceechhhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEcCcCCccCcHHHHHHHHHhhhcCCeEEcceEEEEE
Q psy14461        227 ALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVSIQCCVIEKV  306 (535)
Q Consensus       227 ~v~~~~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~i~~~~v~~i  306 (535)
                      .+.++.+++.....+++++|||                                                          
T Consensus       138 ~~~~~~~~~~~~~~~~~v~VvG----------------------------------------------------------  159 (201)
T PF07992_consen  138 GVDDAQRFLELLESPKRVAVVG----------------------------------------------------------  159 (201)
T ss_dssp             SEEHHHHHHTHSSTTSEEEEES----------------------------------------------------------
T ss_pred             cccccccccccccccccccccc----------------------------------------------------------
Confidence            3556677776666677999999                                                          


Q ss_pred             EEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcC
Q psy14461        307 ISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIV  382 (535)
Q Consensus       307 ~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~  382 (535)
                                                           +.+|. +..+++++++|++.||+++||+.|||||+|||+
T Consensus       160 -------------------------------------~~~l~-~~~~~~~~~~g~i~vd~~~~t~~~~Iya~GD~a  197 (201)
T PF07992_consen  160 -------------------------------------TEFLA-EKLGVELDENGFIKVDENLQTSVPGIYAAGDCA  197 (201)
T ss_dssp             -------------------------------------TTTST-HHTTSTBTTTSSBEEBTTSBBSSTTEEE-GGGB
T ss_pred             -------------------------------------ccccc-ccccccccccccccccccccccccccccccccc
Confidence                                                 34443 566788889999999999999999999999998

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=99.65  E-value=1.2e-14  Score=148.00  Aligned_cols=250  Identities=16%  Similarity=0.094  Sum_probs=131.9

Q ss_pred             eEEEEEeeCCccHHHHHHHHHh-hCCCeEEEEecCCcccccccccc-ccccc---ccchhhcccccccccccccCHHHHH
Q psy14461         87 AVLYLDRIGDEGILLEEELKRQ-TNQRRDELQERGSHLSFRKKRRL-YYPVA---MSDLELEQDSTSALNVTIRNWNAAT  161 (535)
Q Consensus        87 ~~~~v~iiG~G~aG~~~al~~~-~~~~~V~lie~~~~~~~~~~~l~-~~~~~---i~~~~~~~~~~~~~~~~~~~~~~l~  161 (535)
                      +.+|++.||.||++++-|.... ....++..+|+.+...|.++.++ .....   +.+...-.++     ...++|....
T Consensus         1 ~~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P-----~s~~sflnYL   75 (341)
T PF13434_consen    1 EIYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDP-----TSPFSFLNYL   75 (341)
T ss_dssp             -EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-T-----TSTTSHHHHH
T ss_pred             CceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCC-----CCcccHHHHH
Confidence            3688999999999987665333 23689999999998777765432 11111   1111111111     1123444333


Q ss_pred             HHHHHHHHHHH-----------HHHHHHHH-hcCcEEEEe-EEEEe---c-C----CEEEEc-----eeEEEcceEEEee
Q psy14461        162 KLIKRFCIRAK-----------NDSMRELK-ALGIDIVRT-AAAFT---N-P----HTIKLS-----NRSVTGFNFLLAV  215 (535)
Q Consensus       162 ~~~~~~~~~~~-----------~~~~~~~~-~~gV~~~~g-~~~~~---~-~----~~v~~~-----~~~~~~d~lViAT  215 (535)
                      ....+..+-+.           ..+..+.. ...-.+..+ +|..+   . .    ..|.+.     ...+.+++|||||
T Consensus        76 ~~~~rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~  155 (341)
T PF13434_consen   76 HEHGRLYEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLAT  155 (341)
T ss_dssp             HHTT-HHHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE--
T ss_pred             HHcCChhhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECc
Confidence            33322222110           12222222 223223333 23222   1 2    356662     3789999999999


Q ss_pred             CceecC-C----CCC-CceechhhHHhcc---CCCCcEEEECCChHHHHHHHHHHhCCC--cEEEEEc-CcCCcc-----
Q psy14461        216 ERRCLP-E----PRN-SALISADDLFRLG---AWPGKTLVLGGSLMAVEIAATLNFLGV--PVTLVYS-RRLLKH-----  278 (535)
Q Consensus       216 Gs~p~~-~----i~G-~~v~~~~~~~~~~---~~~k~vvViGgG~~g~e~A~~l~~~g~--~Vtlv~~-~~~l~~-----  278 (535)
                      |..|.. +    .++ +.++++.+++...   ..+++|+|||||.+|.|++..|.+.+.  +|+++.| ..+.+.     
T Consensus       156 G~~P~iP~~~~~~~~~~~v~Hss~~~~~~~~~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f  235 (341)
T PF13434_consen  156 GGQPRIPEWFQDLPGSPRVFHSSEYLSRIDQSLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPF  235 (341)
T ss_dssp             --EE---GGGGGGTT-TTEEEGGGHHHHHT-----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CC
T ss_pred             CCCCCCCcchhhcCCCCCEEEehHhhhccccccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccc
Confidence            999876 2    233 6688888877542   456899999999999999999998864  8999999 655442     


Q ss_pred             ----CcHH-------------------------------HHHHHHHhh------hcCCeEE-cceEEEEEEEeCCCcEEE
Q psy14461        279 ----FDQE-------------------------------MVRILLSSL------TKAGVSI-QCCVIEKVISSFDGMKGV  316 (535)
Q Consensus       279 ----~~~~-------------------------------~~~~~~~~l------~~~gV~i-~~~~v~~i~~~~~~~~~v  316 (535)
                          ++++                               +.+.+.+.+      .+..+.+ .+++|++++..+++.+.+
T Consensus       236 ~ne~f~P~~v~~f~~l~~~~R~~~l~~~~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~~l  315 (341)
T PF13434_consen  236 VNEIFSPEYVDYFYSLPDEERRELLREQRHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGVRL  315 (341)
T ss_dssp             HHGGGSHHHHHHHHTS-HHHHHHHHHHTGGGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSEEE
T ss_pred             hhhhcCchhhhhhhcCCHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEEEE
Confidence                2222                               222222221      2335789 999999999885468899


Q ss_pred             EEecCCCCCceEEEcCEEEEccCCC
Q psy14461        317 RGFHPESKEPFADVFKTVVNAMEKK  341 (535)
Q Consensus       317 ~~~~~~~G~~~~~~~D~vi~a~G~~  341 (535)
                      ++.+...|+..++++|.||+|||++
T Consensus       316 ~~~~~~~~~~~~~~~D~VilATGy~  340 (341)
T PF13434_consen  316 TLRHRQTGEEETLEVDAVILATGYR  340 (341)
T ss_dssp             EEEETTT--EEEEEESEEEE---EE
T ss_pred             EEEECCCCCeEEEecCEEEEcCCcc
Confidence            9887667888899999999999975

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=99.65  E-value=1.5e-14  Score=145.93  Aligned_cols=196  Identities=14%  Similarity=0.075  Sum_probs=137.0

Q ss_pred             eEEEcceEEEeeCceecC--CCC--C----CceechhhHHhcc----------------CCCCcEEEE---CCCh-----
Q psy14461        204 RSVTGFNFLLAVERRCLP--EPR--N----SALISADDLFRLG----------------AWPGKTLVL---GGSL-----  251 (535)
Q Consensus       204 ~~~~~d~lViATGs~p~~--~i~--G----~~v~~~~~~~~~~----------------~~~k~vvVi---GgG~-----  251 (535)
                      .++..-.+|+|||-.+..  ..+  |    ++++|.-++.++-                +.||+|+.|   |+-+     
T Consensus       297 ve~~vGaIIvAtGy~~~Da~~k~EyGYG~~~nVIT~lElErml~~~GPT~GkvlrpSdg~~pKrVaFIqCVGSRD~~~~n  376 (622)
T COG1148         297 VELEVGAIIVATGYKPFDATRKEEYGYGKYPNVITNLELERMLNPNGPTGGKVLRPSDGKPPKRVAFIQCVGSRDFQVGN  376 (622)
T ss_pred             EEEEeceEEEEccccccCcchhhhcCCCCCcchhhHHHHHHHhccCCCCCceEEecCCCCCCceEEEEEEecCcCcccCC
Confidence            367888999999987765  121  2    6788877766542                357888875   5543     


Q ss_pred             ---------HHHHHHHHHHhC--CCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEEcceEEEEEEEeCCCcEEEEEe
Q psy14461        252 ---------MAVEIAATLNFL--GVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSIQCCVIEKVISSFDGMKGVRGF  319 (535)
Q Consensus       252 ---------~g~e~A~~l~~~--g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i~~~~v~~i~~~~~~~~~v~~~  319 (535)
                               .++.-|...+++  ..+|++++. -+-...+-+++..+.+   ++.||++...++.+|...+++.+.|..+
T Consensus       377 ~YCSrvCCm~slKqA~~Ike~~Pd~~v~I~YmDiRafG~~yEefY~~~Q---~~~gV~fIRGrvaei~e~p~~~l~V~~E  453 (622)
T COG1148         377 PYCSRVCCMVSLKQAQLIKERYPDTDVTIYYMDIRAFGKDYEEFYVRSQ---EDYGVRFIRGRVAEIAEFPKKKLIVRVE  453 (622)
T ss_pred             hhhHHHHHHHHHhhhhhhhhcCCCcceeEEEEEeeccCccHHHHHHhhh---hhhchhhhcCChHHheeCCCCeeEEEEE
Confidence                     122333344433  468999987 4433333333333333   3669999555777877665666788888


Q ss_pred             cCCCCCceEEEcCEEEEccCCCCCCCCCCc-cccCeeecCCCceEcC-CCC---CcCCCCEEEeCCcCCCCCCcHHHHHH
Q psy14461        320 HPESKEPFADVFKTVVNAMEKKFDFAALNL-HHIGVDIKKKSYVVCN-EKD---QTSVGNIFAVGGIVHGKPNNASMAAI  394 (535)
Q Consensus       320 ~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l-~~~gl~~~~~G~i~vd-~~~---~T~~~~IyA~GD~~~~~~~~~~~A~~  394 (535)
                      +|..|+..++++|+|++++|..|....-.+ +.+|++.+++||++-. +.+   +|+.+|||.+|-+.  +|+-+..++.
T Consensus       454 dTl~g~~~e~~~DLVVLa~Gmep~~g~~kia~iLgL~~~~~gF~k~~hPkl~pv~s~~~GIflAG~aq--gPkdI~~sia  531 (622)
T COG1148         454 DTLTGEVKEIEADLVVLATGMEPSEGAKKIAKILGLSQDEDGFLKEAHPKLRPVDSNRDGIFLAGAAQ--GPKDIADSIA  531 (622)
T ss_pred             eccCccceecccceEEEeeccccCcchHHHHHhcCcccCCCCccccCCCCcccccccCCcEEEeeccc--CCccHHHHHH
Confidence            888898889999999999999986543111 4568899999999876 444   57999999999876  7999999988


Q ss_pred             HHHHHHHHHh
Q psy14461        395 SARLIIERLY  404 (535)
Q Consensus       395 ~g~~aa~~i~  404 (535)
                      ||..||....
T Consensus       532 qa~aAA~kA~  541 (622)
T COG1148         532 QAKAAAAKAA  541 (622)
T ss_pred             HhHHHHHHHH
Confidence            8888776653

>KOG2755|consensus

Probab=99.65  E-value=2.6e-15  Score=140.25  Aligned_cols=257  Identities=15%  Similarity=0.102  Sum_probs=146.6

Q ss_pred             EEeeCCccHHHHHHHH--HhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHHH
Q psy14461         91 LDRIGDEGILLEEELK--RQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRFC  168 (535)
Q Consensus        91 v~iiG~G~aG~~~al~--~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  168 (535)
                      .+|+|||-||+.||-+  ...+..+|+|+..++.+--.   .-|.+  ++....           ++|.      ++.-.
T Consensus         2 fivvgggiagvscaeqla~~~psa~illitass~vksv---tn~~~--i~~yle-----------kfdv------~eq~~   59 (334)
T KOG2755|consen    2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSV---TNYQK--IGQYLE-----------KFDV------KEQNC   59 (334)
T ss_pred             eEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHH---hhHHH--HHHHHH-----------hcCc------cccch
Confidence            4789999999999854  44567889999988743110   00000  111000           0000      00011


Q ss_pred             HHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEce-eEEEcceEEEeeCceecCCCCC--Cc---eechhhHHhcc---C
Q psy14461        169 IRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSN-RSVTGFNFLLAVERRCLPEPRN--SA---LISADDLFRLG---A  239 (535)
Q Consensus       169 ~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~-~~~~~d~lViATGs~p~~~i~G--~~---v~~~~~~~~~~---~  239 (535)
                      .++....+..+..  +.-..     ...+-+.+.+ .++.|++|++|||++|..-.+|  ..   ..+.+....++   .
T Consensus        60 ~elg~~f~~~~~~--v~~~~-----s~ehci~t~~g~~~ky~kKOG~tg~kPklq~E~~n~~Iv~irDtDsaQllq~kl~  132 (334)
T KOG2755|consen   60 HELGPDFRRFLND--VVTWD-----SSEHCIHTQNGEKLKYFKLCLCTGYKPKLQVEGINPKIVGIRDTDSAQLLQCKLV  132 (334)
T ss_pred             hhhcccHHHHHHh--hhhhc-----cccceEEecCCceeeEEEEEEecCCCcceeecCCCceEEEEecCcHHHHHHHHHh
Confidence            1121122222222  11111     2345555543 7899999999999999872222  22   22333333222   4


Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCc-cCcHHHHHHHHHhhhcC------------CeEE-c-----
Q psy14461        240 WPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLK-HFDQEMVRILLSSLTKA------------GVSI-Q-----  299 (535)
Q Consensus       240 ~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~-~~~~~~~~~~~~~l~~~------------gV~i-~-----  299 (535)
                      ..|+|.|+|.|-+++|++..+.  +.+|++... +.+.. .+++.+.+.+...|...            .++. +     
T Consensus       133 kaK~VlilgnGgia~El~yElk--~~nv~w~ikd~~IsaTFfdpGaaef~~i~l~a~~s~~~iaiKh~q~iea~pk~~~n  210 (334)
T KOG2755|consen  133 KAKIVLILGNGGIAMELTYELK--ILNVTWKIKDEGISATFFDPGAAEFYDINLRADRSTRIIAIKHFQYIEAFPKCEEN  210 (334)
T ss_pred             hcceEEEEecCchhHHHHHHhh--cceeEEEecchhhhhcccCccHHHHhHhhhhcccccchhhhhhhhhhhhcCccccc
Confidence            5789999999999999998885  568998887 66553 34555444443333100            0000 0     


Q ss_pred             -------------------------------ceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCC
Q psy14461        300 -------------------------------CCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALN  348 (535)
Q Consensus       300 -------------------------------~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~  348 (535)
                                                     +.-+..-.+  .....++..++..|....+.+|.++.|+|..||++++ 
T Consensus       211 ~vg~algpDw~s~~dl~g~~eseer~l~~l~~~~~~~~d~--~d~~sv~~~~~ek~~~~qlt~d~ivSatgvtpn~e~~-  287 (334)
T KOG2755|consen  211 NVGPALGPDWHSQIDLQGISESENRSLTYLRNCVITSTDT--SDNLSVHYMDKEKMADNQLTCDFIVSATGVTPNSEWA-  287 (334)
T ss_pred             CcccccCcchhhhcccccchhhhhhhhHHhhhheeeeccc--hhhcccccccccccccceeeeeEEEeccccCcCceEE-
Confidence                                           000000000  0111122111123333368899999999999999965 


Q ss_pred             ccccCeeecCCCceEcCCCCCcCCCCEEEeCCcC
Q psy14461        349 LHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIV  382 (535)
Q Consensus       349 l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~  382 (535)
                       -...+...++|.+.||+.|+|+.|++||+||+.
T Consensus       288 -~~~~lq~~edggikvdd~m~tslpdvFa~gDvc  320 (334)
T KOG2755|consen  288 -MNKMLQITEDGGIKVDDAMETSLPDVFAAGDVC  320 (334)
T ss_pred             -ecChhhhccccCeeehhhccccccceeeeccee
Confidence             333466778899999999999999999999987

>KOG3851|consensus

Probab=99.63  E-value=9.3e-15  Score=140.13  Aligned_cols=279  Identities=12%  Similarity=0.139  Sum_probs=167.7

Q ss_pred             EEEEEeeCCccHHHHHH--HHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHH
Q psy14461         88 VLYLDRIGDEGILLEEE--LKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIK  165 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~a--l~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~  165 (535)
                      ..++.|+|||.+|+..|  +.+..+..+|.++|..+...|++.-.+.. .++.....+......+-+....|        
T Consensus        39 h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLvG-gGl~~l~~srr~~a~liP~~a~w--------  109 (446)
T KOG3851|consen   39 HFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLVG-GGLKSLDSSRRKQASLIPKGATW--------  109 (446)
T ss_pred             ceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcceEEec-cchhhhhhccCcccccccCCcHH--------
Confidence            46789999887666655  56666778999999998777765422111 00110000000000000001111        


Q ss_pred             HHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEce-eEEEcceEEEeeCceecC-CCCC-------Cceec---h--
Q psy14461        166 RFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSN-RSVTGFNFLLAVERRCLP-EPRN-------SALIS---A--  231 (535)
Q Consensus       166 ~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~-~~~~~d~lViATGs~p~~-~i~G-------~~v~~---~--  231 (535)
                               +.+..++.+          .+.++|.+++ ++++||++|||+|...+. .|+|       +++.+   .  
T Consensus       110 ---------i~ekv~~f~----------P~~N~v~t~gg~eIsYdylviA~Giql~y~~IkGl~Eal~tP~VcSnYSpky  170 (446)
T KOG3851|consen  110 ---------IKEKVKEFN----------PDKNTVVTRGGEEISYDYLVIAMGIQLDYGKIKGLVEALDTPGVCSNYSPKY  170 (446)
T ss_pred             ---------HHHHHHhcC----------CCcCeEEccCCcEEeeeeEeeeeeceeccchhcChHhhccCCCcccccChHH
Confidence                     111111111          5667777765 899999999999998887 7888       22221   1  


Q ss_pred             -h----hHHhcc------CCCCcEE-EECCChHHHHHHH-HHHhCCC--cEEEEEc---CcCCccCcHHHHHHHHHhhhc
Q psy14461        232 -D----DLFRLG------AWPGKTL-VLGGSLMAVEIAA-TLNFLGV--PVTLVYS---RRLLKHFDQEMVRILLSSLTK  293 (535)
Q Consensus       232 -~----~~~~~~------~~~k~vv-ViGgG~~g~e~A~-~l~~~g~--~Vtlv~~---~~~l~~~~~~~~~~~~~~l~~  293 (535)
                       +    .+.+.+      ..|...+ .-|+-.-.+-++. .++++|.  ++.++..   +.++.  -+...+.+++..++
T Consensus       171 vdk~y~~~~~fk~GNAIfTfPntpiKCAGAPQKi~yise~y~Rk~gvRd~a~iiy~Tsl~~iFg--Vk~Y~~AL~k~~~~  248 (446)
T KOG3851|consen  171 VDKVYKELMNFKKGNAIFTFPNTPIKCAGAPQKIMYISESYFRKRGVRDNANIIYNTSLPTIFG--VKHYADALEKVIQE  248 (446)
T ss_pred             HHHHHHHHHhccCCceEEecCCCccccCCCchhhhhhhHHHHHHhCccccccEEEecCccceec--HHHHHHHHHHHHHh
Confidence             1    111111      1222222 2355555555554 5666674  5666654   33332  25577888898999


Q ss_pred             CCeEE-cceEEEEEEEeCCCcEEEEEecCC-CCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCC-CCC-
Q psy14461        294 AGVSI-QCCVIEKVISSFDGMKGVRGFHPE-SKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNE-KDQ-  369 (535)
Q Consensus       294 ~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~-~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~-~~~-  369 (535)
                      ++|++ ....+.++..+  ++. ..+++.+ -|..++++++++-+....++....   ..+.+ .|+.||+.||. .+| 
T Consensus       249 rni~vn~krnLiEV~~~--~~~-AvFe~L~kPG~t~ei~yslLHv~Ppms~pe~l---~~s~~-adktGfvdVD~~TlQs  321 (446)
T KOG3851|consen  249 RNITVNYKRNLIEVRTN--DRK-AVFENLDKPGVTEEIEYSLLHVTPPMSTPEVL---ANSDL-ADKTGFVDVDQSTLQS  321 (446)
T ss_pred             cceEeeeccceEEEecc--chh-hHHHhcCCCCceeEEeeeeeeccCCCCChhhh---hcCcc-cCcccceecChhhhcc
Confidence            99999 99999998764  222 2233222 388889999999887766655432   44444 47789999995 555 


Q ss_pred             cCCCCEEEeCCcCCCCCC--cHHHHHHHHHHHHHHHh
Q psy14461        370 TSVGNIFAVGGIVHGKPN--NASMAAISARLIIERLY  404 (535)
Q Consensus       370 T~~~~IyA~GD~~~~~~~--~~~~A~~~g~~aa~~i~  404 (535)
                      +..||||++|||. +.|.  .+..+..|..++-+|+.
T Consensus       322 ~kypNVFgiGDc~-n~PnsKTaAAvaaq~~vv~~nl~  357 (446)
T KOG3851|consen  322 KKYPNVFGIGDCM-NLPNSKTAAAVAAQSPVVDKNLT  357 (446)
T ss_pred             ccCCCceeecccc-CCCchhhHHHHHhcCchhhhhHH
Confidence            5899999999999 5554  44445677788888875

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.62  E-value=9.3e-14  Score=138.44  Aligned_cols=203  Identities=17%  Similarity=0.115  Sum_probs=144.0

Q ss_pred             eEEEcceEEEeeCceecC-C----CCCCceechhhHHhcc-C--CCCcEEEECCChHHHHHHHHHHhC----CCcEEEEE
Q psy14461        204 RSVTGFNFLLAVERRCLP-E----PRNSALISADDLFRLG-A--WPGKTLVLGGSLMAVEIAATLNFL----GVPVTLVY  271 (535)
Q Consensus       204 ~~~~~d~lViATGs~p~~-~----i~G~~v~~~~~~~~~~-~--~~k~vvViGgG~~g~e~A~~l~~~----g~~Vtlv~  271 (535)
                      .++.+++|||++|.+|.. +    ++++.++++.+++.-. +  ..++|.|||+|.+|.|+-..|...    ..++.++.
T Consensus       142 ~~y~ar~lVlg~G~~P~IP~~f~~l~~~~vfHss~~~~~~~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~wit  221 (436)
T COG3486         142 TVYRARNLVLGVGTQPYIPPCFRSLIGERVFHSSEYLERHPELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWIT  221 (436)
T ss_pred             cEEEeeeEEEccCCCcCCChHHhCcCccceeehHHHHHhhHHhhcCceEEEEcCCccHHHHHHHHHhCCCCcCccceeee
Confidence            589999999999999986 2    2335788888887432 1  234599999999999999888654    34688999


Q ss_pred             c-CcCCccC---------cHHHH------------------------------HHHHHhh-------hcCCeEE-cceEE
Q psy14461        272 S-RRLLKHF---------DQEMV------------------------------RILLSSL-------TKAGVSI-QCCVI  303 (535)
Q Consensus       272 ~-~~~l~~~---------~~~~~------------------------------~~~~~~l-------~~~gV~i-~~~~v  303 (535)
                      | ..++|..         .++..                              ..+.+.|       .+..|.+ .++++
T Consensus       222 R~~gf~p~d~Skf~~e~F~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev  301 (436)
T COG3486         222 RSSGFLPMDYSKFGLEYFSPEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEV  301 (436)
T ss_pred             ccCCCCccccchhhhhhcCchhHHHHhcCCHHHHHHHHhhcCccccccCHHHHHHHHHHHHHHHhcCCCCCeeeccccce
Confidence            9 7776532         12221                              1122222       2356889 99999


Q ss_pred             EEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCC-CCCccccCeeecCCCceEcCCCCCcC-----CCCEEE
Q psy14461        304 EKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFA-ALNLHHIGVDIKKKSYVVCNEKDQTS-----VGNIFA  377 (535)
Q Consensus       304 ~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~-~l~l~~~gl~~~~~G~i~vd~~~~T~-----~~~IyA  377 (535)
                      ..++..++|++.+.+.+..+|+.+++++|.||+|||++...+ ++..-...+.++++|...|++.++..     .-.||+
T Consensus       302 ~~~~~~G~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P~fL~~l~d~l~~d~~g~l~I~~dY~v~~~~~~~~~ifv  381 (436)
T COG3486         302 QSVEPAGDGRYRLTLRHHETGELETVETDAVILATGYRRAVPSFLEGLADRLQWDDDGRLVIGRDYRVLWDGPGKGRIFV  381 (436)
T ss_pred             eeeecCCCceEEEEEeeccCCCceEEEeeEEEEecccccCCchhhhhHHHhhcccccCCeEecCceeeecCCCCcceEEE
Confidence            999988666677877766678888999999999999996655 44211123667889999999876531     136999


Q ss_pred             eCCcCC----CCCCcHHHHHHHHHHHHHHHhCCC
Q psy14461        378 VGGIVH----GKPNNASMAAISARLIIERLYGMQ  407 (535)
Q Consensus       378 ~GD~~~----~~~~~~~~A~~~g~~aa~~i~g~~  407 (535)
                      .|-..+    +.|.+.-.|.+.+.++ +.++|..
T Consensus       382 qn~e~htHGig~pdLsl~a~Raa~I~-~~L~g~~  414 (436)
T COG3486         382 QNAELHTHGIGAPDLSLGAWRAAVIL-NSLLGRE  414 (436)
T ss_pred             ecccccccccCCccchHHHHHHHHHH-HHHhCcC
Confidence            998765    4566777788877765 5666654

>PTZ00188 adrenodoxin reductase; Provisional

Probab=99.58  E-value=2.2e-13  Score=142.11  Aligned_cols=273  Identities=12%  Similarity=0.039  Sum_probs=156.8

Q ss_pred             EEEEeeCCccHHHHHHHHHh-hCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQ-TNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRF  167 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~-~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  167 (535)
                      .+|+|||+||+|+.+|...+ ..+.+|+|||+.+.+.    |+..|  +++.             .......+...    
T Consensus        40 krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pg----GLvR~--GVaP-------------dh~~~k~v~~~----   96 (506)
T PTZ00188         40 FKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPY----GLIRY--GVAP-------------DHIHVKNTYKT----   96 (506)
T ss_pred             CEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCc----cEEEE--eCCC-------------CCccHHHHHHH----
Confidence            56899999999999987543 4588999999998763    34433  1221             11122222221    


Q ss_pred             HHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEceeEEEcceEEEeeCceecC-CCC----------CC-------cee
Q psy14461        168 CIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAVERRCLP-EPR----------NS-------ALI  229 (535)
Q Consensus       168 ~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~~~~~~d~lViATGs~p~~-~i~----------G~-------~v~  229 (535)
                             +...+...+++++ +.+.+  +..+++++..-.||+||+|||+.+.. +|+          |+       +++
T Consensus        97 -------f~~~~~~~~v~f~-gnv~V--G~Dvt~eeL~~~YDAVIlAtGA~~l~ipi~~~~~~~~~~GGe~~~~~l~Gvf  166 (506)
T PTZ00188         97 -------FDPVFLSPNYRFF-GNVHV--GVDLKMEELRNHYNCVIFCCGASEVSIPIGQQDEDKAVSGGETNPRKQNGIF  166 (506)
T ss_pred             -------HHHHHhhCCeEEE-eeeEe--cCccCHHHHHhcCCEEEEEcCCCCCCCCcccccceeeeccccccccccCcEE
Confidence                   2233445688877 33322  23444544334899999999998665 411          21       344


Q ss_pred             chhhHHhc-----------------c--CCCCcEEEECCChHHHHHHHHH--------------------HhCCC-cEEE
Q psy14461        230 SADDLFRL-----------------G--AWPGKTLVLGGSLMAVEIAATL--------------------NFLGV-PVTL  269 (535)
Q Consensus       230 ~~~~~~~~-----------------~--~~~k~vvViGgG~~g~e~A~~l--------------------~~~g~-~Vtl  269 (535)
                      ++.++..+                 .  ...++++|||+|++|+++|..|                    ++.+. +|+|
T Consensus       167 ~A~dfV~WYNg~p~~~~~~~~~ayL~p~~~~~~vvVIG~GNVAlDvARiL~~~~d~L~~TDI~~~aL~~L~~s~v~~V~i  246 (506)
T PTZ00188        167 HARDLIYFYNNMYNDVRCKAVDNYLNSFENFTTSIIIGNGNVSLDIARILIKSPDDLSKTDISSDYLKVIKRHNIKHIYI  246 (506)
T ss_pred             ehheEEEeecCCCCccccccccccccccCCCCcEEEECCCchHHHHHHHHccCHHHhhcCCCcHHHHHHHHhCCCcEEEE
Confidence            44333211                 0  1236899999999999999974                    33333 6888


Q ss_pred             EEc-CcC--------------Ccc----C-cHH-----------------------HHHHHHHhhh----------cCCe
Q psy14461        270 VYS-RRL--------------LKH----F-DQE-----------------------MVRILLSSLT----------KAGV  296 (535)
Q Consensus       270 v~~-~~~--------------l~~----~-~~~-----------------------~~~~~~~~l~----------~~gV  296 (535)
                      +-| ...              ++.    + +.+                       ..+.+.+...          .+.+
T Consensus       247 vgRRGp~qaaFT~kElrEL~~l~~~~v~v~~~d~~~~~~~~~~~~~~r~~~r~~~~~~~~l~~~~~~~~~~~~~~~~r~i  326 (506)
T PTZ00188        247 VGRRGFWQSSFTNAELRELISLENTKVILSKKNYDLCCHLKSDEENTNMKKRQHEIFQKMVKNYEEVEKNKEFYKTYKII  326 (506)
T ss_pred             EEecCHHHhCCCHHHHHHHhcCCCCeEEEChhhhcccccccchhhhhhhhhhhhhHHHHHHHHHHhhccCccCCCCceEE
Confidence            876 211              010    0 011                       1112222221          1446


Q ss_pred             EE-cceEEEEEEEeCCCcE-EEEEecC--------CCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCC
Q psy14461        297 SI-QCCVIEKVISSFDGMK-GVRGFHP--------ESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNE  366 (535)
Q Consensus       297 ~i-~~~~v~~i~~~~~~~~-~v~~~~~--------~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~  366 (535)
                      .+ +..++.+|.+. ++++ .|+++.+        .+|+.+++++|+|+-|+|++...-    +  |+..|.+  +....
T Consensus       327 ~l~F~~sP~ei~~~-~~~v~~v~~~~n~l~~~~~~~tg~~~~~~~~lV~rsiGY~g~p~----~--g~pFd~~--~~n~~  397 (506)
T PTZ00188        327 EFIFYFEIRQIRPI-DGAMKNVELELNKNVPMSFSSFKENKVLVTPLVIFATGFKKSNF----A--ENLYNQS--VQMFK  397 (506)
T ss_pred             EEEccCCceEEECC-CCcEeEEEEEEeecccCccCCCCeeEEEEcCEEEEcccccCCCC----C--CCCcccc--CCCCC
Confidence            77 88888888753 3444 3555421        256667899999999999986531    1  2334422  22221


Q ss_pred             CCC--cCCCCEEEeCCcCCCCCC-cHHHHHHHHHHHHHHHhC
Q psy14461        367 KDQ--TSVGNIFAVGGIVHGKPN-NASMAAISARLIIERLYG  405 (535)
Q Consensus       367 ~~~--T~~~~IyA~GD~~~~~~~-~~~~A~~~g~~aa~~i~g  405 (535)
                       .+  +..|++|++|.+. .+|. .+..-+.++.-.+.+|+.
T Consensus       398 -grv~~~~~g~Y~~GWiK-rGP~GvIgtn~~da~~t~~~v~~  437 (506)
T PTZ00188        398 -EDIGQHKFAIFKAGWFD-KGPKGNIASQILNSKNSTHLVLN  437 (506)
T ss_pred             -CcccCCCCCcEEeeecC-cCCCceeccCcccHHHHHHHHHH
Confidence             11  1379999999998 4443 444444555555666554

>KOG1800|consensus

Probab=99.53  E-value=3.5e-13  Score=132.45  Aligned_cols=279  Identities=13%  Similarity=0.062  Sum_probs=158.9

Q ss_pred             EEEeeCCccHHHHHHHHHhh--CCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHH
Q psy14461         90 YLDRIGDEGILLEEELKRQT--NQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRF  167 (535)
Q Consensus        90 ~v~iiG~G~aG~~~al~~~~--~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  167 (535)
                      +|.|||+||||+-+|-..+.  .+..|+|+|+.+.+    .|+..|  +++.                |-+++.    ..
T Consensus        22 ~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvP----FGLvRy--GVAP----------------DHpEvK----nv   75 (468)
T KOG1800|consen   22 RVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVP----FGLVRY--GVAP----------------DHPEVK----NV   75 (468)
T ss_pred             eEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcc----cceeee--ccCC----------------CCcchh----hH
Confidence            57999999999988865544  56899999999854    233322  1221                111111    01


Q ss_pred             HHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEceeEEEcceEEEeeCceecC--CCCC---CceechhhHHhcc----
Q psy14461        168 CIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAVERRCLP--EPRN---SALISADDLFRLG----  238 (535)
Q Consensus       168 ~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~~~~~~d~lViATGs~p~~--~i~G---~~v~~~~~~~~~~----  238 (535)
                      ++.+    ...++.....|+-+.   .-+..+.+...+-.||.||||+|+.-.+  +|||   .++++++++..+-    
T Consensus        76 intF----t~~aE~~rfsf~gNv---~vG~dvsl~eL~~~ydavvLaYGa~~dR~L~IPGe~l~~V~Sarefv~Wyng~P  148 (468)
T KOG1800|consen   76 INTF----TKTAEHERFSFFGNV---KVGRDVSLKELTDNYDAVVLAYGADGDRRLDIPGEELSGVISAREFVGWYNGLP  148 (468)
T ss_pred             HHHH----HHHhhccceEEEecc---eecccccHHHHhhcccEEEEEecCCCCcccCCCCcccccceehhhhhhhccCCC
Confidence            1111    133344455544432   1234466665667899999999996544  9999   6788888776542    


Q ss_pred             --------CCCCcEEEECCChHHHHHHHHHHhC-------------------C---CcEEEEEc-CcCCccC--------
Q psy14461        239 --------AWPGKTLVLGGSLMAVEIAATLNFL-------------------G---VPVTLVYS-RRLLKHF--------  279 (535)
Q Consensus       239 --------~~~k~vvViGgG~~g~e~A~~l~~~-------------------g---~~Vtlv~~-~~~l~~~--------  279 (535)
                              -...+|+|||.|++++++|..|...                   .   .+|+|+.| .-.-..|        
T Consensus       149 ~~~~le~dls~~~vvIvG~GNVAlDvARiLls~~~~l~~~TDi~~~aL~~L~~s~VkdV~lvgRRgp~~~aFTiKELRE~  228 (468)
T KOG1800|consen  149 ENQNLEPDLSGRKVVIVGNGNVALDVARILLSPQGPLFRRTDIPKLALNLLKRSNVKDVKLVGRRGPLQVAFTIKELREV  228 (468)
T ss_pred             cccccCcccccceEEEEccCchhhhhhhhhhCCccccccccCCcHHHHhhhhcCCcceEEEEeccCccceeeeHHHHHHH
Confidence                    1257899999999999999887432                   0   26888876 3110000        


Q ss_pred             ----------c--------------------HHHHHHHHHhhhc---------CCe---EE-cceEEEEEEEeCCC--cE
Q psy14461        280 ----------D--------------------QEMVRILLSSLTK---------AGV---SI-QCCVIEKVISSFDG--MK  314 (535)
Q Consensus       280 ----------~--------------------~~~~~~~~~~l~~---------~gV---~i-~~~~v~~i~~~~~~--~~  314 (535)
                                +                    +++.+.+.+.+.+         .+.   .+ +...+.+|.+..++  .+
T Consensus       229 ~~l~~~~~r~~~~~~~~~~~~~~~~~~~RpRkrl~ell~k~~~e~~~~~~~~~~~~k~w~~~f~r~P~~i~~~~~~v~~~  308 (468)
T KOG1800|consen  229 LELPGARPRLDPVDFSGKWMDESETPQHRPRKRLTELLLKWAREHRAKASEEAGGSKQWHLRFFRTPGAILPGADGVSGV  308 (468)
T ss_pred             hCCCCcccccCchhccceeCCcccccccCchhHHHHHHHHHHHhhhhccccccCccchhHHHHhcCHHHhccCcccccce
Confidence                      0                    1111222221111         111   11 22233333332111  11


Q ss_pred             E--EEE-e---cCCCCCceEEEcCEEEEccCCCCCCC--CCCc-cccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCC
Q psy14461        315 G--VRG-F---HPESKEPFADVFKTVVNAMEKKFDFA--ALNL-HHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGK  385 (535)
Q Consensus       315 ~--v~~-~---~~~~G~~~~~~~D~vi~a~G~~p~~~--~l~l-~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~  385 (535)
                      .  ++. +   ....|...+++|++++.++|++...-  .++. ...|+-.+.+|++.+..    -.|++|+.|-+.+|.
T Consensus       309 ~~~~t~l~~~~~~~tg~~e~~p~~l~i~sIGYks~pv~~gipFd~~kgvv~n~~GrV~~s~----~~pglY~sGW~k~GP  384 (468)
T KOG1800|consen  309 RFQVTILEGTQAVPTGAFETLPCGLLIRSIGYKSVPVDSGIPFDDKKGVVPNVNGRVLVSG----CSPGLYASGWVKHGP  384 (468)
T ss_pred             EEEeeeehhhcccccCceEeeccceeEeeeeecccccCCCCCcccccCcccCCCceEEeec----cCCceEEEeeeccCC
Confidence            1  111 1   11246667899999999999875432  1111 12233334455554211    349999999999555


Q ss_pred             CCcHHHHHHHHHHHHHHHhC
Q psy14461        386 PNNASMAAISARLIIERLYG  405 (535)
Q Consensus       386 ~~~~~~A~~~g~~aa~~i~g  405 (535)
                      ...+..++.++..+|+.|..
T Consensus       385 ~GvIattm~dAf~v~d~I~q  404 (468)
T KOG1800|consen  385 TGVIATTMQDAFEVADTIVQ  404 (468)
T ss_pred             cceeeehhhhHHHHHHHHHH
Confidence            56777888888888888864

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=99.52  E-value=3.5e-12  Score=133.10  Aligned_cols=155  Identities=15%  Similarity=0.135  Sum_probs=118.8

Q ss_pred             EEEECCChHHHHHH-HHHH----hCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEE
Q psy14461        244 TLVLGGSLMAVEIA-ATLN----FLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGV  316 (535)
Q Consensus       244 vvViGgG~~g~e~A-~~l~----~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v  316 (535)
                      =+|++.+.+|+|.+ ..++    ++|.+|+++.. +..++..  ++.+.+.+.+++.|+++ ++++|.+++.. ++.+.+
T Consensus       218 ~~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~ppslpG~--rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~-~~~V~~  294 (422)
T PRK05329        218 EAVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPSVPGL--RLQNALRRAFERLGGRIMPGDEVLGAEFE-GGRVTA  294 (422)
T ss_pred             CEEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCCCchH--HHHHHHHHHHHhCCCEEEeCCEEEEEEEe-CCEEEE
Confidence            37789999999999 6665    56999999988 7777754  78888999999999999 99999999876 454543


Q ss_pred             EEecCCCCCceEEEcCEEEEccCCCCCCCCC---------------------------------CccccCeeecCCCceE
Q psy14461        317 RGFHPESKEPFADVFKTVVNAMEKKFDFAAL---------------------------------NLHHIGVDIKKKSYVV  363 (535)
Q Consensus       317 ~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l---------------------------------~l~~~gl~~~~~G~i~  363 (535)
                      ...  .+|++..+++|.+++|+|+.+...+.                                 .+...|+.+|++ ...
T Consensus       295 v~~--~~g~~~~i~AD~VVLAtGrf~s~GL~a~~~~i~Epif~l~v~~~~~r~~w~~~~~~~~~p~~~~GV~~d~~-~~p  371 (422)
T PRK05329        295 VWT--RNHGDIPLRARHFVLATGSFFSGGLVAERDGIREPIFGLDVLQPADRADWYQRDFFAPHPFLQFGVATDAT-LRP  371 (422)
T ss_pred             EEe--eCCceEEEECCEEEEeCCCcccCceeccCCccccccCCCCCCCCCchhhhhhhhhccCCchhhcCceECCC-cCc
Confidence            332  35665679999999999987654331                                 113446666543 555


Q ss_pred             cCCCCCcCCCCEEEeCCcCCCCCCcHH------HHHHHHHHHHHHHhC
Q psy14461        364 CNEKDQTSVGNIFAVGGIVHGKPNNAS------MAAISARLIIERLYG  405 (535)
Q Consensus       364 vd~~~~T~~~~IyA~GD~~~~~~~~~~------~A~~~g~~aa~~i~g  405 (535)
                      +|...++..+|+||+|++. +++..+.      +|+..|-.||++|..
T Consensus       372 ~~~~g~~~~~nl~a~G~vl-~g~d~~~~~~g~Gva~~ta~~a~~~~~~  418 (422)
T PRK05329        372 LDSQGGPVIENLYAAGAVL-GGYDPIREGCGSGVALATALHAAEQIAE  418 (422)
T ss_pred             ccCCCCeeccceEEeeehh-cCCchHHhCCCchhHHHHHHHHHHHHHH
Confidence            6777777899999999999 7776653      688999999998874

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=99.52  E-value=1e-13  Score=131.22  Aligned_cols=169  Identities=17%  Similarity=0.100  Sum_probs=94.4

Q ss_pred             EeeCCccHHHHHHHHHhhCCCe-EEEEecCCcccccccccc-----cccccccchhhccccccc----------cccccc
Q psy14461         92 DRIGDEGILLEEELKRQTNQRR-DELQERGSHLSFRKKRRL-----YYPVAMSDLELEQDSTSA----------LNVTIR  155 (535)
Q Consensus        92 ~iiG~G~aG~~~al~~~~~~~~-V~lie~~~~~~~~~~~l~-----~~~~~i~~~~~~~~~~~~----------~~~~~~  155 (535)
                      +|||+|++|+++|..+...+.+ |+|+|+++.++......+     ..|...... ..++.+..          ......
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~   79 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSD-FGLPDFESFSFDDSPEWRWPHDFP   79 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGG-SS--CCCHSCHHHHHHHHHSBSSE
T ss_pred             CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCcccccc-ccCCcccccccccCCCCCCCcccC
Confidence            5899999999999988888888 999999976543221110     010000000 00000000          001112


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEeE-EEE----ecCCEEEEce-eEEEcceEEEeeCc--eecC-CCCC-
Q psy14461        156 NWNAATKLIKRFCIRAKNDSMRELKALGIDIVRTA-AAF----TNPHTIKLSN-RSVTGFNFLLAVER--RCLP-EPRN-  225 (535)
Q Consensus       156 ~~~~l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~-~~~----~~~~~v~~~~-~~~~~d~lViATGs--~p~~-~i~G-  225 (535)
                      ..+++.++.           +...++.++++..++ ++.    .+...|++.+ .++.+|+||+|||.  .|.. ++|| 
T Consensus        80 ~~~~v~~yl-----------~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~p~~p~~~g~  148 (203)
T PF13738_consen   80 SGEEVLDYL-----------QEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSHPRIPDIPGS  148 (203)
T ss_dssp             BHHHHHHHH-----------HHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCSB---S-TTG
T ss_pred             CHHHHHHHH-----------HHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCCCCccccccc
Confidence            333333333           344555566654432 222    2245677766 48999999999996  7777 7888 


Q ss_pred             --CceechhhHHhcc-CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        226 --SALISADDLFRLG-AWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       226 --~~v~~~~~~~~~~-~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                        ...+++.++.... ..+++|+|||+|.+|+++|..|.+.|.+|+++.|
T Consensus       149 ~~~~~~h~~~~~~~~~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R  198 (203)
T PF13738_consen  149 AFRPIIHSADWRDPEDFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTR  198 (203)
T ss_dssp             GCSEEEEGGG-STTGGCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEES
T ss_pred             cccceEehhhcCChhhcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEec
Confidence              3456666665433 3469999999999999999999999999999998

...

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=99.43  E-value=2.2e-12  Score=102.99  Aligned_cols=76  Identities=33%  Similarity=0.488  Sum_probs=71.1

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEe
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGF  319 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~  319 (535)
                      +++|||||++|+|+|..|+++|.+||++++ +.+++.+++++.+.+.+.|+++||++ +++.+++++.++++ ++|+++
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~-~~V~~~   78 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDG-VEVTLE   78 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTS-EEEEEE
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCE-EEEEEe
Confidence            689999999999999999999999999999 99999999999999999999999999 99999999988545 667775

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=99.35  E-value=5.4e-12  Score=133.32  Aligned_cols=167  Identities=16%  Similarity=0.099  Sum_probs=104.3

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCe-EEEEecCCcccccc---------cccccccccccchhhcccccccc-cccccC
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRR-DELQERGSHLSFRK---------KRRLYYPVAMSDLELEQDSTSAL-NVTIRN  156 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~-V~lie~~~~~~~~~---------~~l~~~~~~i~~~~~~~~~~~~~-~~~~~~  156 (535)
                      ..+++|||+|++|++++..+...+.. ++++||.+.++...         +..|....       .++..... ......
T Consensus         8 ~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~-------~~~~~p~~~~~~~~~   80 (443)
T COG2072           8 HTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLL-------GFPFLPFRWDEAFAP   80 (443)
T ss_pred             cccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchhee-------ccCCCccCCcccCCC
Confidence            46789999999999999888877777 99999997554221         11111100       01111110 011112


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCc----EEEEeE--EEEec---CCEEEEce-e--EEEcceEEEeeCc--eecC-
Q psy14461        157 WNAATKLIKRFCIRAKNDSMRELKALGI----DIVRTA--AAFTN---PHTIKLSN-R--SVTGFNFLLAVER--RCLP-  221 (535)
Q Consensus       157 ~~~l~~~~~~~~~~~~~~~~~~~~~~gV----~~~~g~--~~~~~---~~~v~~~~-~--~~~~d~lViATGs--~p~~-  221 (535)
                      +..+.++..           ..++.+++    .+.+..  +.+.+   ..+|++++ .  ++.+|+||+|||-  .|.. 
T Consensus        81 ~~~~~~y~~-----------~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP  149 (443)
T COG2072          81 FAEIKDYIK-----------DYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIP  149 (443)
T ss_pred             cccHHHHHH-----------HHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCC
Confidence            222233332           33333333    332222  22222   23566654 2  2679999999995  6766 


Q ss_pred             CCCC-----CceechhhHHhc-cCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        222 EPRN-----SALISADDLFRL-GAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       222 ~i~G-----~~v~~~~~~~~~-~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      +|+|     ..++++.++... .-.+|+|+|||+|.+|+++|..|.+.|.+||++.|
T Consensus       150 ~~~G~~~f~g~~~HS~~~~~~~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qR  206 (443)
T COG2072         150 DFAGLDEFKGRILHSADWPNPEDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQR  206 (443)
T ss_pred             CCCCccCCCceEEchhcCCCccccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEec
Confidence            7888     235566655543 44679999999999999999999999999999999

>KOG1399|consensus

Probab=99.21  E-value=4.6e-10  Score=117.40  Aligned_cols=285  Identities=12%  Similarity=0.023  Sum_probs=156.1

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccccccc--------ccc-cc--cccchhhcccccccc---cccc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRR--------LYY-PV--AMSDLELEQDSTSAL---NVTI  154 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l--------~~~-~~--~i~~~~~~~~~~~~~---~~~~  154 (535)
                      .+++|||+|++||++|..+...+.+++++||.+.+++...-.        ..| ..  .++.+--.++.+...   ....
T Consensus         7 ~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~~~   86 (448)
T KOG1399|consen    7 KDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPRYF   86 (448)
T ss_pred             CceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCcccC
Confidence            467999999999999998888999999999998764322111        101 00  011111111111111   1112


Q ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEE--Eec--CCEEEEce-----eEEEcceEEEeeCce--ecC-C
Q psy14461        155 RNWNAATKLIKRFCIRAKNDSMRELKALGIDIVRTAAA--FTN--PHTIKLSN-----RSVTGFNFLLAVERR--CLP-E  222 (535)
Q Consensus       155 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~--~~~--~~~v~~~~-----~~~~~d~lViATGs~--p~~-~  222 (535)
                      .+..++.++.+.+.+.+....       -|.+-...+.  ..+  ...|...+     .+.-||.|++|||-.  |+. .
T Consensus        87 p~~~e~~~YL~~yA~~F~l~~-------~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~  159 (448)
T KOG1399|consen   87 PSHREVLEYLRDYAKHFDLLK-------MINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQ  159 (448)
T ss_pred             CCHHHHHHHHHHHHHhcChhh-------heEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCc
Confidence            344566666665554443210       1222221111  122  34555532     467899999999976  655 5


Q ss_pred             CCC-------CceechhhHHhcc-CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc---CcCCccCcHHHHHHHHHhh
Q psy14461        223 PRN-------SALISADDLFRLG-AWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS---RRLLKHFDQEMVRILLSSL  291 (535)
Q Consensus       223 i~G-------~~v~~~~~~~~~~-~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~---~~~l~~~~~~~~~~~~~~l  291 (535)
                      ++|       ..++++.++...+ -..|+|+|||.|++|+|+|..+++...+|++..+   ....+.          ..+
T Consensus       160 ~~g~~~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~~~~~~~~~~----------~~~  229 (448)
T KOG1399|consen  160 IPGPGIESFKGKIIHSHDYKSPEKFRDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVVSPKVHVEPP----------EIL  229 (448)
T ss_pred             CCCCchhhcCCcceehhhccCcccccCceEEEECCCccHHHHHHHHHHhccCcceeeeccccccccc----------cee
Confidence            665       1356666665433 3468999999999999999999998888888752   000000          000


Q ss_pred             hcCCeEEcceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccC--eeecCCCceEcCCCCC
Q psy14461        292 TKAGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIG--VDIKKKSYVVCNEKDQ  369 (535)
Q Consensus       292 ~~~gV~i~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~g--l~~~~~G~i~vd~~~~  369 (535)
                       ..++..... ++.+..+  +   ..+.  +++.  ...+|.+|+|||+.-...++  +..+  ...+++ ...   -..
T Consensus       230 -~~~~~~~~~-i~~~~e~--~---~~~~--~~~~--~~~~D~ii~ctgy~y~fPfl--~~~~~~~~~~~~-~~p---l~k  292 (448)
T KOG1399|consen  230 -GENLWQVPS-IKSFTED--G---SVFE--KGGP--VERVDRIIFCTGYKYKFPFL--ETLGLGTVRDNI-VGP---LYK  292 (448)
T ss_pred             -ecceEEccc-cccccCc--c---eEEE--cCce--eEEeeeEEEeeeeEeeccee--ccCCceeeccCc-ccc---hhe
Confidence             112222111 4444322  1   2232  2565  78899999999999887776  2221  111111 000   111


Q ss_pred             cCCCCEEEeCCcCCCCC---CcHHHHHHHHHHHHHHHhCCC
Q psy14461        370 TSVGNIFAVGGIVHGKP---NNASMAAISARLIIERLYGMQ  407 (535)
Q Consensus       370 T~~~~IyA~GD~~~~~~---~~~~~A~~~g~~aa~~i~g~~  407 (535)
                      .-.|..++-|....+-+   ...+.-..|++.+++-+.|..
T Consensus       293 ~~~p~~~~~~~~~~~l~~~~~~f~~~e~Q~r~~~~v~~G~~  333 (448)
T KOG1399|consen  293 KVFPPALAPGLSLAGLPLIQIPFPMFELQARWVAAVLEGRL  333 (448)
T ss_pred             eccchhhCccccccccCeeeEeecceehhhhhhHhhhcCCC
Confidence            22344444452210111   234567788888888888764

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.86  E-value=2.2e-06  Score=88.63  Aligned_cols=177  Identities=12%  Similarity=0.079  Sum_probs=95.2

Q ss_pred             EEEEeeCCccHHHHHHHHHh---hCCCeEEEEecCCcccccccccccccccccchhhcccccc-cccccccC-HHHHHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQ---TNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTS-ALNVTIRN-WNAATKL  163 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~---~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~-~~~~~~~~-~~~l~~~  163 (535)
                      .+|+|||+|+.|+..|..++   .....|.|||+...++   +|++|.... +....+.+... ...  ..| .....+|
T Consensus         2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G---~GiaYs~~~-p~~~lNv~a~~mS~~--~pD~p~~F~~W   75 (474)
T COG4529           2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFG---QGIAYSTEE-PEHLLNVPAARMSAF--APDIPQDFVRW   75 (474)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccC---CCccCCCCC-chhhhcccccccccc--CCCCchHHHHH
Confidence            46899999999988764332   2333499999988653   334443110 00000111000 000  001 1112222


Q ss_pred             HHHH-----------------------HHHHHHHHHHHHHhcC---cEEEEeEEEEecC------CEEEEce-eEEEcce
Q psy14461        164 IKRF-----------------------CIRAKNDSMRELKALG---IDIVRTAAAFTNP------HTIKLSN-RSVTGFN  210 (535)
Q Consensus       164 ~~~~-----------------------~~~~~~~~~~~~~~~g---V~~~~g~~~~~~~------~~v~~~~-~~~~~d~  210 (535)
                      .+..                       -..+...+..+++...   |.+++.++.....      ..++..+ ....+|-
T Consensus        76 L~~~~~~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~~g~~~~ad~  155 (474)
T COG4529          76 LQKQLQRYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTADGPSEIADI  155 (474)
T ss_pred             HHhcccccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEecCCCCeeeeeE
Confidence            2221                       1122233334444433   7777766544211      1222222 6678999


Q ss_pred             EEEeeCceecC-C-----CCC-C----ceechhhHHhccCCCCcEEEECCChHHHHHHHHHHhCCC--cEEEEEc
Q psy14461        211 FLLAVERRCLP-E-----PRN-S----ALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGV--PVTLVYS  272 (535)
Q Consensus       211 lViATGs~p~~-~-----i~G-~----~v~~~~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~--~Vtlv~~  272 (535)
                      +|+|||-.+.. +     .+| .    ..+.++.+..++ ...+|+|+|+|.+-++....|+++|.  +||++.|
T Consensus       156 ~Vlatgh~~~~~~~~~~~~~~~~~~ia~~~~~~~ld~v~-~~drVli~GsgLt~~D~v~~l~~~gh~g~It~iSR  229 (474)
T COG4529         156 IVLATGHSAPPADPAARDLKGSPRLIADPYPANALDGVD-ADDRVLIVGSGLTSIDQVLVLRRRGHKGPITAISR  229 (474)
T ss_pred             EEEeccCCCCCcchhhhccCCCcceeccccCCccccccc-CCCceEEecCCchhHHHHHHHhccCCccceEEEec
Confidence            99999975544 2     233 1    123332222223 34569999999999999999999884  8999988

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=98.74  E-value=1.3e-07  Score=94.77  Aligned_cols=98  Identities=16%  Similarity=0.113  Sum_probs=78.7

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc-Cc---C--------CccC-----cHHHHHHHHHhhhcCCeEE-cceEEE
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RR---L--------LKHF-----DQEMVRILLSSLTKAGVSI-QCCVIE  304 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~---~--------l~~~-----~~~~~~~~~~~l~~~gV~i-~~~~v~  304 (535)
                      +|+|||||+.|+++|..|++.|.+|+++++ +.   +        .|.+     +.++...+++.+++.|+++ . .++.
T Consensus         2 dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~   80 (300)
T TIGR01292         2 DVIIIGAGPAGLTAAIYAARANLKTLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIY-EEVI   80 (300)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEE-EEEE
Confidence            599999999999999999999999999997 41   1        1222     3678888888888999999 8 8899


Q ss_pred             EEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCC
Q psy14461        305 KVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAAL  347 (535)
Q Consensus       305 ~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l  347 (535)
                      +++.. ++.+.+++.   +|+  ++.+|.+++|+|..|+...+
T Consensus        81 ~v~~~-~~~~~v~~~---~~~--~~~~d~liiAtG~~~~~~~i  117 (300)
T TIGR01292        81 KVDLS-DRPFKVKTG---DGK--EYTAKAVIIATGASARKLGI  117 (300)
T ss_pred             EEEec-CCeeEEEeC---CCC--EEEeCEEEECCCCCcccCCC
Confidence            99875 455566653   565  79999999999999876543

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=98.60  E-value=4.5e-07  Score=99.58  Aligned_cols=110  Identities=16%  Similarity=0.158  Sum_probs=83.2

Q ss_pred             hhhHHhccCCCCcEEEECCCh--HHHHHHHHHHhCCCcEEEEEc-CcCCccCc--------------HHHHHHHHHhhhc
Q psy14461        231 ADDLFRLGAWPGKTLVLGGSL--MAVEIAATLNFLGVPVTLVYS-RRLLKHFD--------------QEMVRILLSSLTK  293 (535)
Q Consensus       231 ~~~~~~~~~~~k~vvViGgG~--~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~--------------~~~~~~~~~~l~~  293 (535)
                      .+++.++...++++.|+|+++  ++.+++..+...+..++++.+ ..+++.++              ..+...+.+.+++
T Consensus       147 ~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~G~~l~~~L~~~~~~  226 (574)
T PRK12842        147 GKDMARLRPPLKTITFIGMMFNSSNADLKHFFNATRSLTSFIYVAKRLATHLKDLALYRRGTQVTSGNALAARLAKSALD  226 (574)
T ss_pred             hhhHHhhcCCcccccccceecccchHHHHHHHhhccchhHHHHHHHHHHhhHHHHhhccCCcccccHHHHHHHHHHHHHh
Confidence            566777777889999999998  899999999999998888766 55554332              4566777888888


Q ss_pred             CCeEE-cceEEEEEEEeCCCcEE-EEEecCCCCCceEEEcC-EEEEccCCCCC
Q psy14461        294 AGVSI-QCCVIEKVISSFDGMKG-VRGFHPESKEPFADVFK-TVVNAMEKKFD  343 (535)
Q Consensus       294 ~gV~i-~~~~v~~i~~~~~~~~~-v~~~~~~~G~~~~~~~D-~vi~a~G~~p~  343 (535)
                      .|+++ .++.++++..+ ++++. |...+  .+.+..+.++ .||+|+|..++
T Consensus       227 ~Gv~i~~~~~v~~l~~~-~g~V~GV~~~~--~~~~~~i~a~k~VVlAtGg~~~  276 (574)
T PRK12842        227 LGIPILTGTPARELLTE-GGRVVGARVID--AGGERRITARRGVVLACGGFSH  276 (574)
T ss_pred             CCCEEEeCCEEEEEEee-CCEEEEEEEEc--CCceEEEEeCCEEEEcCCCccc
Confidence            99999 99999999865 45543 55542  2333457886 79999997764

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=98.58  E-value=2.4e-05  Score=81.33  Aligned_cols=135  Identities=11%  Similarity=0.078  Sum_probs=84.5

Q ss_pred             CCcEEEEEcCcCCc-cCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCC
Q psy14461        264 GVPVTLVYSRRLLK-HFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKK  341 (535)
Q Consensus       264 g~~Vtlv~~~~~l~-~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~  341 (535)
                      |+.|.-+-.  +-| .....+.+.+.+.+++.|+++ .+.+|.++..+ ++++.....  .++.+..+.+|.+|+|+|.-
T Consensus       247 g~~v~E~pt--lPPSv~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~-~~~v~~V~t--~~g~~~~l~AD~vVLAaGaw  321 (419)
T TIGR03378       247 GLTLCELPT--MPPSLLGIRLEEALKHRFEQLGGVMLPGDRVLRAEFE-GNRVTRIHT--RNHRDIPLRADHFVLASGSF  321 (419)
T ss_pred             CCCEEeCCC--CCCCCcHHHHHHHHHHHHHHCCCEEEECcEEEEEEee-CCeEEEEEe--cCCccceEECCEEEEccCCC
Confidence            665554432  222 235677888889999999999 99999998876 455543222  24433479999999999965


Q ss_pred             -CCCC-----CCCccccCeee---------------cC----CCceEcCCCCCc-----CCCCEEEeCCcCCCCCCcH--
Q psy14461        342 -FDFA-----ALNLHHIGVDI---------------KK----KSYVVCNEKDQT-----SVGNIFAVGGIVHGKPNNA--  389 (535)
Q Consensus       342 -p~~~-----~l~l~~~gl~~---------------~~----~G~i~vd~~~~T-----~~~~IyA~GD~~~~~~~~~--  389 (535)
                       .+.-     .+.-.-.++++               ++    .=.|.+|+++|.     ..+|+||+|-+. ++...+  
T Consensus       322 ~S~gL~a~l~~i~Epif~L~v~~~~~r~~W~~~~ff~~~p~~~~GV~~d~~lrp~~~g~~~~Nl~a~G~vL-~G~d~~~~  400 (419)
T TIGR03378       322 FSNGLVAEFDKIYEPIFGLDVLQLPDRDQWYQHRFFAPHPFMQFGVKTDAQLRPSRGGQTIENLYAIGAVL-GGYDPIFE  400 (419)
T ss_pred             cCHHHHhhcCceeeeccCCCcCCCcchhhhcchhhcCCChhhhcCceEccccCccCCCcccccceEechhh-cCCChHhc
Confidence             2210     00000001111               00    112778888873     378999999998 554332  


Q ss_pred             ----HHHHHHHHHHHHHHh
Q psy14461        390 ----SMAAISARLIIERLY  404 (535)
Q Consensus       390 ----~~A~~~g~~aa~~i~  404 (535)
                          -+|+..|-.||++|.
T Consensus       401 gcG~GVai~Ta~~aa~~i~  419 (419)
T TIGR03378       401 GCGSGVAVSTALHAAEQII  419 (419)
T ss_pred             CCCchhHHHHHHHHHHhhC
Confidence                268888888888873

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=98.51  E-value=9.6e-07  Score=89.04  Aligned_cols=96  Identities=20%  Similarity=0.189  Sum_probs=77.5

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccC-----------------------------------------
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHF-----------------------------------------  279 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~-----------------------------------------  279 (535)
                      ..|+|||||+.|+-+|..++++|.+|+++++ +.+...+                                         
T Consensus         4 ~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~~d   83 (408)
T COG2081           4 FDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTPED   83 (408)
T ss_pred             ceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCHHH
Confidence            4699999999999999999999999999987 6432210                                         


Q ss_pred             --------------------------cHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcC
Q psy14461        280 --------------------------DQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFK  332 (535)
Q Consensus       280 --------------------------~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D  332 (535)
                                                ..++.+.+.+.+++.||++ ++++|.+|+.+ +....+.+   .+|+  ++.||
T Consensus        84 ~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~-~~~f~l~t---~~g~--~i~~d  157 (408)
T COG2081          84 FIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKD-DSGFRLDT---SSGE--TVKCD  157 (408)
T ss_pred             HHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEec-CceEEEEc---CCCC--EEEcc
Confidence                                      0345667788899999999 99999999986 34566766   4787  89999


Q ss_pred             EEEEccC--CCCC
Q psy14461        333 TVVNAME--KKFD  343 (535)
Q Consensus       333 ~vi~a~G--~~p~  343 (535)
                      .+|+|+|  .-|.
T Consensus       158 ~lilAtGG~S~P~  170 (408)
T COG2081         158 SLILATGGKSWPK  170 (408)
T ss_pred             EEEEecCCcCCCC
Confidence            9999999  4453

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=98.48  E-value=1e-06  Score=88.91  Aligned_cols=133  Identities=14%  Similarity=0.096  Sum_probs=78.6

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcc-------cccccccccccccccchhhccccccc-c--cccccCH
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHL-------SFRKKRRLYYPVAMSDLELEQDSTSA-L--NVTIRNW  157 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~-------~~~~~~l~~~~~~i~~~~~~~~~~~~-~--~~~~~~~  157 (535)
                      ..+|+|||+||||+-||......+++|+|||+++.+       +..+|++...-. ......+.|+... +  --..++.
T Consensus         3 ~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~-~~~~ls~~p~~~~fl~sal~~ft~   81 (408)
T COG2081           3 RFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEA-PDEFLSRNPGNGHFLKSALARFTP   81 (408)
T ss_pred             cceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCcccccccc-HHHHHHhCCCcchHHHHHHHhCCH
Confidence            368899999999999999999999999999999853       233343322100 0111112221100 0  0012233


Q ss_pred             HHHHHHHHHH------------------HHHHHHHHHHHHHhcCcEEEEeEEEE-e--cC--CEEEEce-eEEEcceEEE
Q psy14461        158 NAATKLIKRF------------------CIRAKNDSMRELKALGIDIVRTAAAF-T--NP--HTIKLSN-RSVTGFNFLL  213 (535)
Q Consensus       158 ~~l~~~~~~~------------------~~~~~~~~~~~~~~~gV~~~~g~~~~-~--~~--~~v~~~~-~~~~~d~lVi  213 (535)
                      .+++++..++                  ...+...+...+++.||+++..+... +  ++  ..+.+.+ .++.+|.+||
T Consensus        82 ~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lil  161 (408)
T COG2081          82 EDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLIL  161 (408)
T ss_pred             HHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEEEE
Confidence            3344333322                  12344455567788899998876432 2  22  3444444 4799999999


Q ss_pred             eeC--ceecC
Q psy14461        214 AVE--RRCLP  221 (535)
Q Consensus       214 ATG--s~p~~  221 (535)
                      |||  |.|..
T Consensus       162 AtGG~S~P~l  171 (408)
T COG2081         162 ATGGKSWPKL  171 (408)
T ss_pred             ecCCcCCCCC
Confidence            999  67754

>KOG1752|consensus

Probab=98.46  E-value=5.3e-07  Score=74.73  Aligned_cols=65  Identities=28%  Similarity=0.320  Sum_probs=57.8

Q ss_pred             hHHHHhhhcCCcEEEEeCCCchhhHHHHHHHHHhcCCcceEEEEEeeCCccHHHHHHHHHhhCCCeE
Q psy14461         48 PAYISRLSYENRILIFTHAVLREENARAERYLNARGDRFAVLYLDRIGDEGILLEEELKRQTNQRRD  114 (535)
Q Consensus        48 ~~~~~~~i~~~~v~v~~k~~cp~~~~~~k~~~~~~~~~~~~~~v~iiG~G~aG~~~al~~~~~~~~V  114 (535)
                      ...+..++.+++|++|+|++|| ||.++|.++...+..+.+++++....|.. ++.+|.+.+++++|
T Consensus         4 ~~~v~~~i~~~~VVifSKs~C~-~c~~~k~ll~~~~v~~~vvELD~~~~g~e-iq~~l~~~tg~~tv   68 (104)
T KOG1752|consen    4 EAKVRKMISENPVVIFSKSSCP-YCHRAKELLSDLGVNPKVVELDEDEDGSE-IQKALKKLTGQRTV   68 (104)
T ss_pred             HHHHHHHhhcCCEEEEECCcCc-hHHHHHHHHHhCCCCCEEEEccCCCCcHH-HHHHHHHhcCCCCC
Confidence            3467889999999999999999 99999999999999999999999988875 99999988776644

>PHA03050 glutaredoxin; Provisional

Probab=98.39  E-value=1.3e-06  Score=73.60  Aligned_cols=73  Identities=14%  Similarity=0.135  Sum_probs=56.8

Q ss_pred             hHHHHhhhcCCcEEEEeCCCchhhHHHHHHHHHhcCC---cceEEEEEeeCCccHHHHHHHHHhhCCCeE-EEEecCCc
Q psy14461         48 PAYISRLSYENRILIFTHAVLREENARAERYLNARGD---RFAVLYLDRIGDEGILLEEELKRQTNQRRD-ELQERGSH  122 (535)
Q Consensus        48 ~~~~~~~i~~~~v~v~~k~~cp~~~~~~k~~~~~~~~---~~~~~~v~iiG~G~aG~~~al~~~~~~~~V-~lie~~~~  122 (535)
                      +.+++.++++++|++|++++|| ||.++++++++.+.   .++++++.-.+.+.. ++.++...++..+| .||-.+.+
T Consensus         3 ~~~v~~~i~~~~V~vys~~~CP-yC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~-~~~~l~~~tG~~tVP~IfI~g~~   79 (108)
T PHA03050          3 EEFVQQRLANNKVTIFVKFTCP-FCRNALDILNKFSFKRGAYEIVDIKEFKPENE-LRDYFEQITGGRTVPRIFFGKTS   79 (108)
T ss_pred             HHHHHHHhccCCEEEEECCCCh-HHHHHHHHHHHcCCCcCCcEEEECCCCCCCHH-HHHHHHHHcCCCCcCEEEECCEE
Confidence            4688999999999999999999 99999999999887   566777775555444 88888887776655 34444443

>PRK09897 hypothetical protein; Provisional

Probab=98.35  E-value=2.7e-05  Score=84.02  Aligned_cols=84  Identities=11%  Similarity=-0.015  Sum_probs=49.4

Q ss_pred             HHHhcC--cEEEEe-EEEEe--cCC--EEEEce--eEEEcceEEEeeCceecCCCCC-----CceechhhHHhccCCCCc
Q psy14461        178 ELKALG--IDIVRT-AAAFT--NPH--TIKLSN--RSVTGFNFLLAVERRCLPEPRN-----SALISADDLFRLGAWPGK  243 (535)
Q Consensus       178 ~~~~~g--V~~~~g-~~~~~--~~~--~v~~~~--~~~~~d~lViATGs~p~~~i~G-----~~v~~~~~~~~~~~~~k~  243 (535)
                      .+...|  ++++.. +++.+  ++.  .+.+.+  ..+.+|+||||||..+....++     ..-|.. +..... .+.+
T Consensus       116 ~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVLAtGh~~p~~~~~~~~yi~~pw~~-~~~~~i-~~~~  193 (534)
T PRK09897        116 QARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIATGHVWPDEEEATRTYFPSPWSG-LMEAKV-DACN  193 (534)
T ss_pred             HHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEECCCCCCCCCChhhccccCCCCcc-hhhcCC-CCCe
Confidence            344455  566544 44433  223  333322  5689999999999743221122     112221 122111 2589


Q ss_pred             EEEECCChHHHHHHHHHHhC
Q psy14461        244 TLVLGGSLMAVEIAATLNFL  263 (535)
Q Consensus       244 vvViGgG~~g~e~A~~l~~~  263 (535)
                      |+|+|.|.++++++..|..+
T Consensus       194 V~I~GtGLt~iD~v~~Lt~~  213 (534)
T PRK09897        194 VGIMGTSLSGLDAAMAVAIQ  213 (534)
T ss_pred             EEEECCCHHHHHHHHHHHhc
Confidence            99999999999999998865

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.35  E-value=2.1e-06  Score=93.89  Aligned_cols=106  Identities=18%  Similarity=0.145  Sum_probs=79.6

Q ss_pred             ccCCCCcEEEECCChHHHHHHHH-------HHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEE
Q psy14461        237 LGAWPGKTLVLGGSLMAVEIAAT-------LNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVI  307 (535)
Q Consensus       237 ~~~~~k~vvViGgG~~g~e~A~~-------l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~  307 (535)
                      +...|+.++++|++++++|.+..       +.++|.+|+++.. +..+..+...+...+.+.+++.|+++ +++.++++.
T Consensus       156 ~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~L~~~~~~~gv~v~~~t~v~~l~  235 (557)
T PRK07843        156 YGKVPLNMVVMQQDYVWLNLLKRHPRGVLRALKVGARTLWAKATGKNLLGMGQALAAGLRIGLQRAGVPVLLNTPLTDLY  235 (557)
T ss_pred             cccccccccccHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhccCCCcccCcHHHHHHHHHHHHcCCCEEEeCCEEEEEE
Confidence            34568889999999999998865       6677788887665 55555567778888889999999999 999999998


Q ss_pred             EeCCCcEE-EEEecCCCCCceEEEcC-EEEEccC-CCCCCC
Q psy14461        308 SSFDGMKG-VRGFHPESKEPFADVFK-TVVNAME-KKFDFA  345 (535)
Q Consensus       308 ~~~~~~~~-v~~~~~~~G~~~~~~~D-~vi~a~G-~~p~~~  345 (535)
                      .+ ++++. |....  +|++..+.++ .||+|+| +.+|.+
T Consensus       236 ~~-~g~v~Gv~~~~--~g~~~~i~A~~~VIlAtGG~~~n~~  273 (557)
T PRK07843        236 VE-DGRVTGVHAAE--SGEPQLIRARRGVILASGGFEHNEQ  273 (557)
T ss_pred             Ee-CCEEEEEEEEe--CCcEEEEEeceeEEEccCCcCcCHH
Confidence            65 45543 54442  5666678886 6889775 555443

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.35  E-value=5.3e-06  Score=89.98  Aligned_cols=100  Identities=18%  Similarity=0.146  Sum_probs=79.2

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc---CcCC-----------c-cCcHHHHHHHHHhhhcCCeEE-cceEE
Q psy14461        240 WPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS---RRLL-----------K-HFDQEMVRILLSSLTKAGVSI-QCCVI  303 (535)
Q Consensus       240 ~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~---~~~l-----------~-~~~~~~~~~~~~~l~~~gV~i-~~~~v  303 (535)
                      ...+|+|||||+.|+.+|..+++.|.+|++++.   .++.           + ...+++.+.+.+.+++.|+++ .+++|
T Consensus       211 ~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~~~~~V  290 (515)
T TIGR03140       211 DPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMENQRA  290 (515)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEEcCCEE
Confidence            347899999999999999999999999999963   1111           1 234667788888888899999 99999


Q ss_pred             EEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCC
Q psy14461        304 EKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFA  345 (535)
Q Consensus       304 ~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~  345 (535)
                      ++++.. ++...+++.   +|+  .+.+|.+++|+|..|...
T Consensus       291 ~~I~~~-~~~~~v~~~---~g~--~i~~d~lIlAtGa~~~~~  326 (515)
T TIGR03140       291 KKIETE-DGLIVVTLE---SGE--VLKAKSVIVATGARWRKL  326 (515)
T ss_pred             EEEEec-CCeEEEEEC---CCC--EEEeCEEEECCCCCcCCC
Confidence            999765 345566663   666  799999999999987543

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=98.34  E-value=6.1e-06  Score=87.89  Aligned_cols=105  Identities=15%  Similarity=0.137  Sum_probs=79.2

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCc------------------------------------------
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLK------------------------------------------  277 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~------------------------------------------  277 (535)
                      .++|+|||+|++|+-+|..|++.|.+|+++++ +.+..                                          
T Consensus        10 ~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f~   89 (461)
T PLN02172         10 SQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGYR   89 (461)
T ss_pred             CCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccCC
Confidence            58999999999999999999999999999987 53210                                          


Q ss_pred             ---c---------------CcHHHHHHHHHhhhcCCeE--E-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEE
Q psy14461        278 ---H---------------FDQEMVRILLSSLTKAGVS--I-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVN  336 (535)
Q Consensus       278 ---~---------------~~~~~~~~~~~~l~~~gV~--i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~  336 (535)
                         .               -..++.+++++..+..|+.  + ++++|++++.. ++++.|++.+ .++...+..+|.||+
T Consensus        90 dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~-~~~w~V~~~~-~~~~~~~~~~d~VIv  167 (461)
T PLN02172         90 DFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPV-DGKWRVQSKN-SGGFSKDEIFDAVVV  167 (461)
T ss_pred             CCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeec-CCeEEEEEEc-CCCceEEEEcCEEEE
Confidence               0               0045667777777788887  8 99999999876 5667787753 123333568999999


Q ss_pred             ccC--CCCCCCCC
Q psy14461        337 AME--KKFDFAAL  347 (535)
Q Consensus       337 a~G--~~p~~~~l  347 (535)
                      |+|  ..|+...+
T Consensus       168 AtG~~~~P~~P~i  180 (461)
T PLN02172        168 CNGHYTEPNVAHI  180 (461)
T ss_pred             eccCCCCCcCCCC
Confidence            999  56765543

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=98.33  E-value=3.9e-06  Score=79.19  Aligned_cols=97  Identities=19%  Similarity=0.141  Sum_probs=65.6

Q ss_pred             EEECCChHHHHHHHHHHhCCCc-EEEEEc-CcCCc--------------c-------------C----------------
Q psy14461        245 LVLGGSLMAVEIAATLNFLGVP-VTLVYS-RRLLK--------------H-------------F----------------  279 (535)
Q Consensus       245 vViGgG~~g~e~A~~l~~~g~~-Vtlv~~-~~~l~--------------~-------------~----------------  279 (535)
                      +|||+|+.|+-+|..|.+.|.+ |+++++ +.+..              .             +                
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS   80 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred             CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence            6999999999999999999998 999998 54310              0             0                


Q ss_pred             cHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCC--CCCCCCC
Q psy14461        280 DQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEK--KFDFAAL  347 (535)
Q Consensus       280 ~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~--~p~~~~l  347 (535)
                      .+++.+++++..++.++++ .+++|+++... ++...|++.   +++  ++.+|.||+|+|.  .|+...+
T Consensus        81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~-~~~w~v~~~---~~~--~~~a~~VVlAtG~~~~p~~p~~  145 (203)
T PF13738_consen   81 GEEVLDYLQEYAERFGLEIRFNTRVESVRRD-GDGWTVTTR---DGR--TIRADRVVLATGHYSHPRIPDI  145 (203)
T ss_dssp             HHHHHHHHHHHHHHTTGGEETS--EEEEEEE-TTTEEEEET---TS---EEEEEEEEE---SSCSB---S-
T ss_pred             HHHHHHHHHHHHhhcCcccccCCEEEEEEEe-ccEEEEEEE---ecc--eeeeeeEEEeeeccCCCCcccc
Confidence            1345567778888889999 99999999988 456888884   664  7889999999996  5655433

...

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=98.32  E-value=2.7e-06  Score=89.19  Aligned_cols=96  Identities=16%  Similarity=0.162  Sum_probs=69.6

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCC--cEEEEEc-CcC-C--ccCcHHHH-----H----HHHHhhhcCCeEE-cceEEE
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLGV--PVTLVYS-RRL-L--KHFDQEMV-----R----ILLSSLTKAGVSI-QCCVIE  304 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g~--~Vtlv~~-~~~-l--~~~~~~~~-----~----~~~~~l~~~gV~i-~~~~v~  304 (535)
                      .++|+|||||+.|+.+|..|++.|.  +|+++++ +.+ .  +.+.+.+.     +    .-.+.+.+.||++ .++.+.
T Consensus         3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~V~   82 (396)
T PRK09754          3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPANWWQENNVHLHSGVTIK   82 (396)
T ss_pred             cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCCHHHHHHCCCEEEcCCEEE
Confidence            4689999999999999999999875  7999987 332 1  22222211     0    0123356679999 999999


Q ss_pred             EEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCC
Q psy14461        305 KVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDF  344 (535)
Q Consensus       305 ~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~  344 (535)
                      .++..   ...|.+.   +|+  ++.+|.+++|||.+|..
T Consensus        83 ~id~~---~~~v~~~---~g~--~~~yd~LViATGs~~~~  114 (396)
T PRK09754         83 TLGRD---TRELVLT---NGE--SWHWDQLFIATGAAARP  114 (396)
T ss_pred             EEECC---CCEEEEC---CCC--EEEcCEEEEccCCCCCC
Confidence            99764   2345553   676  79999999999999864

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=98.28  E-value=3.3e-06  Score=88.27  Aligned_cols=95  Identities=23%  Similarity=0.270  Sum_probs=62.5

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccC------------------------------------------
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHF------------------------------------------  279 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~------------------------------------------  279 (535)
                      +|+|||||+.|+-+|..+++.|.+|+|+++ +++...+                                          
T Consensus         2 dviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~d   81 (409)
T PF03486_consen    2 DVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPED   81 (409)
T ss_dssp             SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HHH
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHHH
Confidence            589999999999999999999999999998 6432110                                          


Q ss_pred             --------------------------cHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcC
Q psy14461        280 --------------------------DQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFK  332 (535)
Q Consensus       280 --------------------------~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D  332 (535)
                                                ..++.+.+++.+++.||++ ++++|.+|+..+++.+.|.++   +++  .+.+|
T Consensus        82 ~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~---~~~--~~~a~  156 (409)
T PF03486_consen   82 LIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTK---NGG--EYEAD  156 (409)
T ss_dssp             HHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEET---TTE--EEEES
T ss_pred             HHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeecc---Ccc--cccCC
Confidence                                      0345566777888899999 999999998863333677762   444  89999


Q ss_pred             EEEEccCCCC
Q psy14461        333 TVVNAMEKKF  342 (535)
Q Consensus       333 ~vi~a~G~~p  342 (535)
                      .||+|+|-..
T Consensus       157 ~vILAtGG~S  166 (409)
T PF03486_consen  157 AVILATGGKS  166 (409)
T ss_dssp             EEEE----SS
T ss_pred             EEEEecCCCC
Confidence            9999999654

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=98.28  E-value=4.5e-06  Score=88.95  Aligned_cols=102  Identities=18%  Similarity=0.245  Sum_probs=71.2

Q ss_pred             CcEEEECCChHHHHHHHHHHhCC--CcEEEEEc-CcC------CccC-----c--HHHHHHHHHhhhcCCeEE-cceEEE
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLG--VPVTLVYS-RRL------LKHF-----D--QEMVRILLSSLTKAGVSI-QCCVIE  304 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g--~~Vtlv~~-~~~------l~~~-----~--~~~~~~~~~~l~~~gV~i-~~~~v~  304 (535)
                      ++|+|||||+.|+.+|..|++++  .+|+++++ +.+      ++.+     +  .++.....+.+++.||++ .++.++
T Consensus         1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~   80 (444)
T PRK09564          1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKTEHEVV   80 (444)
T ss_pred             CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeEEecCEEE
Confidence            47999999999999999999886  48999998 643      1211     1  122333345577789999 999999


Q ss_pred             EEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCC
Q psy14461        305 KVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAA  346 (535)
Q Consensus       305 ~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~  346 (535)
                      +|+.+ +..  |++.+..+|+...+++|.+++|+|.+|+...
T Consensus        81 ~id~~-~~~--v~~~~~~~~~~~~~~yd~lviAtG~~~~~~~  119 (444)
T PRK09564         81 KVDAK-NKT--ITVKNLKTGSIFNDTYDKLMIATGARPIIPP  119 (444)
T ss_pred             EEECC-CCE--EEEEECCCCCEEEecCCEEEECCCCCCCCCC
Confidence            99865 333  4443212355223349999999999987654

>TIGR02189 GlrX-like_plant Glutaredoxin-like family

Probab=98.27  E-value=2e-06  Score=71.37  Aligned_cols=61  Identities=21%  Similarity=0.166  Sum_probs=48.0

Q ss_pred             HhhhcCCcEEEEeCCCchhhHHHHHHHHHhcCCcceEEEEEeeCCccHHHHHHHHHhhCCCeE
Q psy14461         52 SRLSYENRILIFTHAVLREENARAERYLNARGDRFAVLYLDRIGDEGILLEEELKRQTNQRRD  114 (535)
Q Consensus        52 ~~~i~~~~v~v~~k~~cp~~~~~~k~~~~~~~~~~~~~~v~iiG~G~aG~~~al~~~~~~~~V  114 (535)
                      .++|++++|++|++++|| +|.++|+++.+.+.++.+++|+..-.+.. +..++...++..+|
T Consensus         2 ~~~i~~~~Vvvysk~~Cp-~C~~ak~~L~~~~i~~~~vdid~~~~~~~-~~~~l~~~tg~~tv   62 (99)
T TIGR02189         2 RRMVSEKAVVIFSRSSCC-MCHVVKRLLLTLGVNPAVHEIDKEPAGKD-IENALSRLGCSPAV   62 (99)
T ss_pred             hhhhccCCEEEEECCCCH-HHHHHHHHHHHcCCCCEEEEcCCCccHHH-HHHHHHHhcCCCCc
Confidence            467899999999999999 99999999999999988888775544333 66677665555443

This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=98.24  E-value=1.2e-05  Score=87.24  Aligned_cols=99  Identities=18%  Similarity=0.165  Sum_probs=79.1

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc---CcC---------C---ccCcHHHHHHHHHhhhcCCeEE-cceEEE
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS---RRL---------L---KHFDQEMVRILLSSLTKAGVSI-QCCVIE  304 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~---~~~---------l---~~~~~~~~~~~~~~l~~~gV~i-~~~~v~  304 (535)
                      ..+|+|||||+.|+.+|..+++.|.+|+++..   ...         .   ....+++.+.+.+.+++.|+++ .++++.
T Consensus       211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~V~  290 (517)
T PRK15317        211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAERFGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIMNLQRAS  290 (517)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEEcCCEEE
Confidence            35899999999999999999999999999964   111         0   1234678888888899999999 999999


Q ss_pred             EEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCC
Q psy14461        305 KVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFA  345 (535)
Q Consensus       305 ~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~  345 (535)
                      ++... ++...|.+.   +|+  ++.+|.+++|+|.+|...
T Consensus       291 ~I~~~-~~~~~V~~~---~g~--~i~a~~vViAtG~~~r~~  325 (517)
T PRK15317        291 KLEPA-AGLIEVELA---NGA--VLKAKTVILATGARWRNM  325 (517)
T ss_pred             EEEec-CCeEEEEEC---CCC--EEEcCEEEECCCCCcCCC
Confidence            99875 355666663   666  799999999999987643

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=98.23  E-value=5.5e-06  Score=86.56  Aligned_cols=131  Identities=13%  Similarity=0.091  Sum_probs=61.1

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccc-------ccccccccccccccchhhccccc-cccc--ccccCHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLS-------FRKKRRLYYPVAMSDLELEQDST-SALN--VTIRNWN  158 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~-------~~~~~l~~~~~~i~~~~~~~~~~-~~~~--~~~~~~~  158 (535)
                      ++|+|||+|++|+.||+.+...+.+|+|+|+++.++       ..+|.+.............++.. ..+.  -..++..
T Consensus         1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~   80 (409)
T PF03486_consen    1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPE   80 (409)
T ss_dssp             -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HH
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHH
Confidence            478999999999999999999999999999997531       22333221000000000000000 0000  0011222


Q ss_pred             HHHHHHHHH------------------HHHHHHHHHHHHHhcCcEEEEeE-EEEe--cCC---EEEE-ceeEEEcceEEE
Q psy14461        159 AATKLIKRF------------------CIRAKNDSMRELKALGIDIVRTA-AAFT--NPH---TIKL-SNRSVTGFNFLL  213 (535)
Q Consensus       159 ~l~~~~~~~------------------~~~~~~~~~~~~~~~gV~~~~g~-~~~~--~~~---~v~~-~~~~~~~d~lVi  213 (535)
                      ++..+..+.                  ...+...+...+++.||+++.++ +..+  ++.   .|.+ ++..+.+|+|||
T Consensus        81 d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vIL  160 (409)
T PF03486_consen   81 DLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVIL  160 (409)
T ss_dssp             HHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEEEE
T ss_pred             HHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEEEE
Confidence            222222211                  12344445566778899998775 3332  232   3566 458999999999


Q ss_pred             eeCcee
Q psy14461        214 AVERRC  219 (535)
Q Consensus       214 ATGs~p  219 (535)
                      |||...
T Consensus       161 AtGG~S  166 (409)
T PF03486_consen  161 ATGGKS  166 (409)
T ss_dssp             ----SS
T ss_pred             ecCCCC
Confidence            999643

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=98.23  E-value=1.5e-05  Score=81.50  Aligned_cols=102  Identities=19%  Similarity=0.087  Sum_probs=75.4

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccC------------------------------------------
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHF------------------------------------------  279 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~------------------------------------------  279 (535)
                      +|+|||||+.|+-+|..|++.|.+|+|+++ +.+.+..                                          
T Consensus         3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~~   82 (356)
T PF01494_consen    3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGISD   82 (356)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEETTT
T ss_pred             eEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeecccCC
Confidence            599999999999999999999999999998 5321100                                          


Q ss_pred             ---------------------------cHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEc
Q psy14461        280 ---------------------------DQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVF  331 (535)
Q Consensus       280 ---------------------------~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~  331 (535)
                                                 ..++.+.+.+.+++.|+++ .++++..++.+ ++.+.+.+....+|+.+++++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d-~~~~~~~~~~~~~g~~~~i~a  161 (356)
T PF01494_consen   83 SRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQD-DDGVTVVVRDGEDGEEETIEA  161 (356)
T ss_dssp             SEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEE-TTEEEEEEEETCTCEEEEEEE
T ss_pred             ccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeeccccccc-ccccccccccccCCceeEEEE
Confidence                                       0345556667777789999 99999999877 455666665444677668999


Q ss_pred             CEEEEccCCCCCCC
Q psy14461        332 KTVVNAMEKKFDFA  345 (535)
Q Consensus       332 D~vi~a~G~~p~~~  345 (535)
                      |+||-|-|......
T Consensus       162 dlvVgADG~~S~vR  175 (356)
T PF01494_consen  162 DLVVGADGAHSKVR  175 (356)
T ss_dssp             SEEEE-SGTT-HHH
T ss_pred             eeeecccCcccchh
Confidence            99999999886543

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK06847 hypothetical protein; Provisional

Probab=98.19  E-value=1.7e-05  Score=82.48  Aligned_cols=99  Identities=20%  Similarity=0.205  Sum_probs=76.4

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCc------------------------------------------
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLK------------------------------------------  277 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~------------------------------------------  277 (535)
                      .++|+|||||+.|+-+|..|++.|.+|+++++ +.+.+                                          
T Consensus         4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~g~   83 (375)
T PRK06847          4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDPDGT   83 (375)
T ss_pred             cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECCCCC
Confidence            46899999999999999999999999999997 43100                                          


Q ss_pred             ---cC-----------------cHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEE
Q psy14461        278 ---HF-----------------DQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVN  336 (535)
Q Consensus       278 ---~~-----------------~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~  336 (535)
                         .+                 ..++.+.+.+.+++.|+++ .++++++++.+ ++.+.+.+.   +|+  ++.+|.||.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~-~~~~~v~~~---~g~--~~~ad~vI~  157 (375)
T PRK06847         84 LLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQD-DDGVTVTFS---DGT--TGRYDLVVG  157 (375)
T ss_pred             EEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEc-CCEEEEEEc---CCC--EEEcCEEEE
Confidence               00                 0233455666667789999 99999999875 455667663   676  799999999


Q ss_pred             ccCCCCCCC
Q psy14461        337 AMEKKFDFA  345 (535)
Q Consensus       337 a~G~~p~~~  345 (535)
                      |.|..+...
T Consensus       158 AdG~~s~~r  166 (375)
T PRK06847        158 ADGLYSKVR  166 (375)
T ss_pred             CcCCCcchh
Confidence            999887654

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=98.19  E-value=1.3e-05  Score=88.25  Aligned_cols=230  Identities=16%  Similarity=0.056  Sum_probs=127.1

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccccc---ccccccccccch-hhcccccccccccccCHHHHHHH
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKK---RRLYYPVAMSDL-ELEQDSTSALNVTIRNWNAATKL  163 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~---~l~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~l~~~  163 (535)
                      ..+|+|||+|.+|+.+|+.....+.+|+|+||.+.+++...   +...    +++. .....+      ...+.+.+.++
T Consensus        12 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~~~~g~~~----~~~~~~~~~~g------~~~~~~~~~~~   81 (581)
T PRK06134         12 ECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGTTAWSGGWMW----IPRNPLARRAG------IVEDIEQPRTY   81 (581)
T ss_pred             ccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCccccccCceee----cCccHHhhhcc------ccchHHHHHHH
Confidence            36789999999999999998888999999999875433211   1110    0100 000000      01112222211


Q ss_pred             HHH---------HHHHHH---HHHHHHHHh-cCcEEEEeEEEEecCCEEEEceeEEEcceEEEeeCceecC--CCCCCce
Q psy14461        164 IKR---------FCIRAK---NDSMRELKA-LGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAVERRCLP--EPRNSAL  228 (535)
Q Consensus       164 ~~~---------~~~~~~---~~~~~~~~~-~gV~~~~g~~~~~~~~~v~~~~~~~~~d~lViATGs~p~~--~i~G~~v  228 (535)
                      ...         .+..+.   ....++++. .++++.....         .  ..+.....-.++|.++..  +++|.. 
T Consensus        82 ~~~~~~~~~~~~l~~~~~~~s~~~~~wl~~~~gv~~~~~~~---------~--~d~~~~~~~~~~ggr~~~~~~~~g~~-  149 (581)
T PRK06134         82 LRHELGARYDAARIDAFLEAGPHMVAFFERHTALRFADGNA---------I--PDYHGDTPGAATGGRSLIAAPFDGRE-  149 (581)
T ss_pred             HHHHhCcCCCHHHHHHHHhccHHHHHHHHhcCCceeeecCC---------C--CCCCCCCCCCCCCCCeeccCCCChhh-
Confidence            111         111111   112234544 3555421100         0  011112222455655543  445410 


Q ss_pred             echhhHHhccCCCCcEEEECCChHH-HHHHHHHHhCCCcEEEEEc-CcCCcc--------------CcHHHHHHHHHhhh
Q psy14461        229 ISADDLFRLGAWPGKTLVLGGSLMA-VEIAATLNFLGVPVTLVYS-RRLLKH--------------FDQEMVRILLSSLT  292 (535)
Q Consensus       229 ~~~~~~~~~~~~~k~vvViGgG~~g-~e~A~~l~~~g~~Vtlv~~-~~~l~~--------------~~~~~~~~~~~~l~  292 (535)
                       ..+++..+...+.++.++|++.++ .+++..+...+..+.+..+ ..+++.              ....+...+.+.++
T Consensus       150 -~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~a~  228 (581)
T PRK06134        150 -LGALLERLRKPLRETSFMGMPIMAGADLAAFLNPTRSFRAFLHVARRFARHLIDLARHGRGMHLVNGNALVARLLKSAE  228 (581)
T ss_pred             -hhHHHHHhccccccccccccccccHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHH
Confidence             114555566667788889988876 7788777766665555433 322221              23456677888888


Q ss_pred             cCCeEE-cceEEEEEEEeCCCcEE-EEEecCCCCCceEEEc-CEEEEccCCCCC
Q psy14461        293 KAGVSI-QCCVIEKVISSFDGMKG-VRGFHPESKEPFADVF-KTVVNAMEKKFD  343 (535)
Q Consensus       293 ~~gV~i-~~~~v~~i~~~~~~~~~-v~~~~~~~G~~~~~~~-D~vi~a~G~~p~  343 (535)
                      +.|+++ .++.++++..+ ++++. |..+.  ++...++.+ +.||+|+|--.+
T Consensus       229 ~~Gv~i~~~t~v~~l~~~-~g~v~GV~~~~--~~~~~~i~a~k~VVlAtGg~~~  279 (581)
T PRK06134        229 DLGVRIWESAPARELLRE-DGRVAGAVVET--PGGLQEIRARKGVVLAAGGFPH  279 (581)
T ss_pred             hCCCEEEcCCEEEEEEEe-CCEEEEEEEEE--CCcEEEEEeCCEEEEcCCCccc
Confidence            999999 99999998765 45543 44442  344446888 999999986543

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=98.18  E-value=8.8e-06  Score=86.52  Aligned_cols=102  Identities=10%  Similarity=0.131  Sum_probs=69.2

Q ss_pred             CcEEEECCChHHHHHHHHHHhC--CCcEEEEEc-CcCC--c-cCcHHH-------HHHH----HHhhhcCCeEE-cceEE
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFL--GVPVTLVYS-RRLL--K-HFDQEM-------VRIL----LSSLTKAGVSI-QCCVI  303 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~--g~~Vtlv~~-~~~l--~-~~~~~~-------~~~~----~~~l~~~gV~i-~~~~v  303 (535)
                      ++|+|||||+.|+.+|..|+++  +.+|+|+++ +.+.  + .++.-.       .+.+    ....++.||++ .+++|
T Consensus         2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~V   81 (438)
T PRK13512          2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYYIGEVVEDRKYALAYTPEKFYDRKQITVKTYHEV   81 (438)
T ss_pred             CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccCCcchhhcCccCCHHHcccCCHHHHHHhCCCEEEeCCEE
Confidence            4799999999999999999887  579999998 5321  1 111100       0111    22235579999 99999


Q ss_pred             EEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCC
Q psy14461        304 EKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAA  346 (535)
Q Consensus       304 ~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~  346 (535)
                      ++|+.+ +.  .|.+.+..+++..++++|.+++|||.+|+...
T Consensus        82 ~~Id~~-~~--~v~~~~~~~~~~~~~~yd~lviAtGs~~~~~~  121 (438)
T PRK13512         82 IAINDE-RQ--TVTVLNRKTNEQFEESYDKLILSPGASANSLG  121 (438)
T ss_pred             EEEECC-CC--EEEEEECCCCcEEeeecCEEEECCCCCCCCCC
Confidence            999875 33  34443212234345789999999999997543

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=98.13  E-value=1.6e-05  Score=84.25  Aligned_cols=103  Identities=12%  Similarity=0.040  Sum_probs=72.2

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC--ccC---------cHHHHHHHHHhhhcCCeEEcceEEEEEEE
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL--KHF---------DQEMVRILLSSLTKAGVSIQCCVIEKVIS  308 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l--~~~---------~~~~~~~~~~~l~~~gV~i~~~~v~~i~~  308 (535)
                      .++|||||||+.|+.+|..|.+.+.+||+|++ +.+.  +.+         ..++...+.+.++..++++...+|++|+.
T Consensus        10 ~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~V~~Id~   89 (424)
T PTZ00318         10 KPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLPNRYLRAVVYDVDF   89 (424)
T ss_pred             CCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHhccCCeEEEEEEEEEEEc
Confidence            46899999999999999999776789999998 5432  211         12333445566777788885578999987


Q ss_pred             eCCCcEEEEEecC-----CCCCceEEEcCEEEEccCCCCCCCC
Q psy14461        309 SFDGMKGVRGFHP-----ESKEPFADVFKTVVNAMEKKFDFAA  346 (535)
Q Consensus       309 ~~~~~~~v~~~~~-----~~G~~~~~~~D~vi~a~G~~p~~~~  346 (535)
                      + +..+.+.....     .+|+  ++++|.+++|+|..|+...
T Consensus        90 ~-~~~v~~~~~~~~~~~~~~g~--~i~yD~LViAtGs~~~~~~  129 (424)
T PTZ00318         90 E-EKRVKCGVVSKSNNANVNTF--SVPYDKLVVAHGARPNTFN  129 (424)
T ss_pred             C-CCEEEEecccccccccCCce--EecCCEEEECCCcccCCCC
Confidence            5 34343321100     1344  7999999999999987543

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=98.13  E-value=9.1e-05  Score=72.76  Aligned_cols=164  Identities=17%  Similarity=0.196  Sum_probs=98.4

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc--------------------------------------CcHH
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH--------------------------------------FDQE  282 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~--------------------------------------~~~~  282 (535)
                      -+|+|||+|+.|+-+|..|++.|.+|.++++ ..+...                                      ...+
T Consensus        26 ~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~~vd~~~  105 (257)
T PRK04176         26 VDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLYVADSVE  105 (257)
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCcceeccHHH
Confidence            5799999999999999999999999999998 543110                                      0123


Q ss_pred             HHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcE-EEEEecC---CCC---CceEEEcCEEEEccCCCCCCCCCCccc---
Q psy14461        283 MVRILLSSLTKAGVSI-QCCVIEKVISSFDGMK-GVRGFHP---ESK---EPFADVFKTVVNAMEKKFDFAALNLHH---  351 (535)
Q Consensus       283 ~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~-~v~~~~~---~~G---~~~~~~~D~vi~a~G~~p~~~~l~l~~---  351 (535)
                      +...+.+...+.|+++ .++.+.++..++++++ -+....+   .+|   +..++.++.||.|+|........-.+.   
T Consensus       106 l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v~~~l~~~~~~  185 (257)
T PRK04176        106 AAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAEVVSVLARKGPE  185 (257)
T ss_pred             HHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcHHHHHHHHHcCC
Confidence            4445566667789999 9999999876533343 2332210   011   235799999999999644321100000   


Q ss_pred             cCeeecCCCceEcC--C-----CCCcCCCCEEEeCCcCC---CCCCcHHH--H-HHHHHHHHHHHhC
Q psy14461        352 IGVDIKKKSYVVCN--E-----KDQTSVGNIFAVGGIVH---GKPNNASM--A-AISARLIIERLYG  405 (535)
Q Consensus       352 ~gl~~~~~G~i~vd--~-----~~~T~~~~IyA~GD~~~---~~~~~~~~--A-~~~g~~aa~~i~g  405 (535)
                      .+...-.......+  +     +.+-=.||+|++|=+++   +.|...+.  + .-.|+.||+-|+.
T Consensus       186 ~~~~~~g~~~~~~~~~e~~v~~~t~~~~~g~~~~gm~~~~~~~~~rmg~~fg~m~~sg~~~a~~~~~  252 (257)
T PRK04176        186 LGIEVPGEKSMWAERGEKLVVENTGEVYPGLYVAGMAANAVHGLPRMGPIFGGMLLSGKKVAELILE  252 (257)
T ss_pred             cccccCCccccccCchHHHHHhcCCeEcCCEEEeehhhhhhcCCCccCchhHhHHHhHHHHHHHHHH
Confidence            00100000111111  1     11113799999998765   44444332  2 4478888887764

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=98.09  E-value=3.5e-05  Score=76.87  Aligned_cols=96  Identities=17%  Similarity=0.051  Sum_probs=73.2

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc-------------------------------------------
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH-------------------------------------------  278 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~-------------------------------------------  278 (535)
                      +|+|||||+.|+-+|..|++.|.+|+++++ +.+...                                           
T Consensus         2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (295)
T TIGR02032         2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEIPIE   81 (295)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEeccC
Confidence            589999999999999999999999999998 432100                                           


Q ss_pred             ------C-cHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCC
Q psy14461        279 ------F-DQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFD  343 (535)
Q Consensus       279 ------~-~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~  343 (535)
                            + ..++.+.+.+.+++.|+++ .+++++++..+ ++.+.+.+.  .++.  ++++|.||.|+|....
T Consensus        82 ~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~-~~~~~~~~~--~~~~--~~~a~~vv~a~G~~s~  149 (295)
T TIGR02032        82 TELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIH-DDRVVVIVR--GGEG--TVTAKIVIGADGSRSI  149 (295)
T ss_pred             CCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEe-CCEEEEEEc--CccE--EEEeCEEEECCCcchH
Confidence                  0 1345566677777889999 99999998776 455566553  1333  7999999999998654

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>TIGR00292 thiazole biosynthesis enzyme

Probab=98.08  E-value=7.6e-05  Score=73.10  Aligned_cols=164  Identities=18%  Similarity=0.225  Sum_probs=100.3

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC----------cc----------------------------CcH
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL----------KH----------------------------FDQ  281 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l----------~~----------------------------~~~  281 (535)
                      .-+|+|||+|+.|+-+|..|++.|.+|.++++ ..+.          +.                            ...
T Consensus        21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~~~  100 (254)
T TIGR00292        21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVADSA  100 (254)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEeeHH
Confidence            35799999999999999999999999999998 5431          00                            012


Q ss_pred             HHHHHHHHhhhcCCeEE-cceEEEEEEEeCCC-cE-EEEEecC---CCC---CceEEEcCEEEEccCCCCCC-CCCCccc
Q psy14461        282 EMVRILLSSLTKAGVSI-QCCVIEKVISSFDG-MK-GVRGFHP---ESK---EPFADVFKTVVNAMEKKFDF-AALNLHH  351 (535)
Q Consensus       282 ~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~-~~-~v~~~~~---~~G---~~~~~~~D~vi~a~G~~p~~-~~l~l~~  351 (535)
                      ++.+.+.+...+.|+++ .++.+.++..+++. ++ -|.+...   .+|   +..+++++.||.|+|..... .++ .+.
T Consensus       101 el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~~l-~~~  179 (254)
T TIGR00292       101 EFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVAVC-AKK  179 (254)
T ss_pred             HHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchHHHHH-HHH
Confidence            34445556667789999 99999998765332 23 2333210   012   23579999999999965432 222 122


Q ss_pred             cCeeecC---CC--ceEcCC-------CCCcCCCCEEEeCCcCC---CCCCcHHH--H-HHHHHHHHHHHhC
Q psy14461        352 IGVDIKK---KS--YVVCNE-------KDQTSVGNIFAVGGIVH---GKPNNASM--A-AISARLIIERLYG  405 (535)
Q Consensus       352 ~gl~~~~---~G--~i~vd~-------~~~T~~~~IyA~GD~~~---~~~~~~~~--A-~~~g~~aa~~i~g  405 (535)
                      .++....   .|  ....+.       +.+-=.||+|++|=.++   +.|...+.  + .-.|+.||+-|+.
T Consensus       180 ~~~~~~~~~~~g~~~~~~~~~e~~~~~~t~~~~~g~~~~gm~~~~~~~~~rmgp~fg~m~~sg~~~a~~~~~  251 (254)
T TIGR00292       180 IVLEDQVPKLGGEKSMWAEVAEVAIHENTREVVPNLYVAGMAVAAVHGLPRMGPIFGGMLLSGKHVAEQILE  251 (254)
T ss_pred             cCcccCCcccCCchhhhhhhhHHHHHhccCcccCCEEEechhhhhhcCCCCcCchHHHHHHhhHHHHHHHHH
Confidence            1211111   01  111111       11124799999998765   44444432  3 4478888887764

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PRK10262 thioredoxin reductase; Provisional

Probab=98.08  E-value=5.8e-05  Score=76.82  Aligned_cols=99  Identities=15%  Similarity=0.080  Sum_probs=70.1

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-Cc---C--------Ccc-----CcHHHHHHHHHhhhcCCeEE-cce
Q psy14461        240 WPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RR---L--------LKH-----FDQEMVRILLSSLTKAGVSI-QCC  301 (535)
Q Consensus       240 ~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~---~--------l~~-----~~~~~~~~~~~~l~~~gV~i-~~~  301 (535)
                      ..++|+|||||+.|+.+|..++++|.++++++. +.   +        +|.     ..+++.+.+.+.....++++ .+ 
T Consensus         5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   83 (321)
T PRK10262          5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFD-   83 (321)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeecCCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEee-
Confidence            357899999999999999999999999999865 21   1        111     12345666677777777777 54 


Q ss_pred             EEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCC
Q psy14461        302 VIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAA  346 (535)
Q Consensus       302 ~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~  346 (535)
                      .+..++.. ++.+.++.    +..  .+.+|.||+|+|..|+...
T Consensus        84 ~v~~v~~~-~~~~~v~~----~~~--~~~~d~vilAtG~~~~~~~  121 (321)
T PRK10262         84 HINKVDLQ-NRPFRLTG----DSG--EYTCDALIIATGASARYLG  121 (321)
T ss_pred             EEEEEEec-CCeEEEEe----cCC--EEEECEEEECCCCCCCCCC
Confidence            56667654 34444443    223  5899999999999987543

>PRK07236 hypothetical protein; Provisional

Probab=98.06  E-value=2.6e-05  Score=81.56  Aligned_cols=98  Identities=17%  Similarity=0.114  Sum_probs=71.5

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc------CcHHHHHHHHHh-----------------------
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH------FDQEMVRILLSS-----------------------  290 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~------~~~~~~~~~~~~-----------------------  290 (535)
                      +.+|+|||||++|+.+|..|++.|.+|+|+++ +...+.      +.+...+.+.+.                       
T Consensus         6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~g~   85 (386)
T PRK07236          6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRDGR   85 (386)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCCCC
Confidence            47899999999999999999999999999999 644321      233333322221                       


Q ss_pred             --------------------hhc--CCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCC
Q psy14461        291 --------------------LTK--AGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDF  344 (535)
Q Consensus       291 --------------------l~~--~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~  344 (535)
                                          |.+  .++++ .++++++++.+ ++.++|+++   +|+  ++.+|+||.|-|.....
T Consensus        86 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~-~~~v~v~~~---~g~--~~~ad~vIgADG~~S~v  156 (386)
T PRK07236         86 VVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQD-GDRVTARFA---DGR--RETADLLVGADGGRSTV  156 (386)
T ss_pred             EeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEec-CCeEEEEEC---CCC--EEEeCEEEECCCCCchH
Confidence                                110  13568 89999999876 456777774   677  79999999999987654

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=98.06  E-value=3.2e-05  Score=83.73  Aligned_cols=136  Identities=18%  Similarity=0.145  Sum_probs=86.7

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccC-----------------------------------------
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHF-----------------------------------------  279 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~-----------------------------------------  279 (535)
                      |+|+|||+|.+|+-.|..|.+.|.+++++++ +.+...+                                         
T Consensus         2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f~   81 (531)
T PF00743_consen    2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDFP   81 (531)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSSE
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCCC
Confidence            7999999999999999999999999999998 6542110                                         


Q ss_pred             -cHHHHHHHHHhhhcCCe--EE-cceEEEEEEEeCC----CcEEEEEecCCCCCceEEEcCEEEEccCCC--CCCCCCCc
Q psy14461        280 -DQEMVRILLSSLTKAGV--SI-QCCVIEKVISSFD----GMKGVRGFHPESKEPFADVFKTVVNAMEKK--FDFAALNL  349 (535)
Q Consensus       280 -~~~~~~~~~~~l~~~gV--~i-~~~~v~~i~~~~~----~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~--p~~~~l~l  349 (535)
                       .+++.+++++..+.-++  .+ ++++|.+++..++    ++..|+..  .+|+..+..+|.|++|+|.-  |+.+.-  
T Consensus        82 ~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~--~~g~~~~~~fD~VvvatG~~~~P~~P~~--  157 (531)
T PF00743_consen   82 SHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTE--NDGKEETEEFDAVVVATGHFSKPNIPEP--  157 (531)
T ss_dssp             BHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEET--TTTEEEEEEECEEEEEE-SSSCESB-----
T ss_pred             CHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEee--cCCeEEEEEeCeEEEcCCCcCCCCCChh--
Confidence             15677888888777776  47 8999999987533    35667764  36766677899999999973  554420  


Q ss_pred             cccCeeecCCCceEcCCCCCc----CCCCEEEeCCcC
Q psy14461        350 HHIGVDIKKKSYVVCNEKDQT----SVGNIFAVGGIV  382 (535)
Q Consensus       350 ~~~gl~~~~~G~i~vd~~~~T----~~~~IyA~GD~~  382 (535)
                      .-.|++.- +|.+.=...++.    ..++|-++|-..
T Consensus       158 ~~~G~e~F-~G~i~HS~~yr~~~~f~gKrVlVVG~g~  193 (531)
T PF00743_consen  158 SFPGLEKF-KGEIIHSKDYRDPEPFKGKRVLVVGGGN  193 (531)
T ss_dssp             --CTGGGH-CSEEEEGGG--TGGGGTTSEEEEESSSH
T ss_pred             hhhhhhcC-CeeEEccccCcChhhcCCCEEEEEeCCH
Confidence            01123211 354433333332    345788888644

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>TIGR00136 gidA glucose-inhibited division protein A

Probab=98.04  E-value=0.00024  Score=76.97  Aligned_cols=33  Identities=15%  Similarity=-0.021  Sum_probs=30.0

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCC
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGS  121 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~  121 (535)
                      ++|+|||+|++|+.+|......+.+|+|+|++.
T Consensus         1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~   33 (617)
T TIGR00136         1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNL   33 (617)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCEEEEeccc
Confidence            368999999999999999988899999999874

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=98.04  E-value=1.6e-05  Score=81.96  Aligned_cols=104  Identities=18%  Similarity=0.030  Sum_probs=69.1

Q ss_pred             cCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc---------CcHHHHHHHHHhhhcCCeEE-cceEEEEE
Q psy14461        238 GAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH---------FDQEMVRILLSSLTKAGVSI-QCCVIEKV  306 (535)
Q Consensus       238 ~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~---------~~~~~~~~~~~~l~~~gV~i-~~~~v~~i  306 (535)
                      ...+++|+|||+|+.|+++|..|++.|.+|+++++ +.+...         .+.+......+.+.+.|+++ .++.+..+
T Consensus        15 ~~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~v~~~   94 (352)
T PRK12770         15 PPTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFGIPEFRIPIERVREGVKELEEAGVVFHTRTKVCCG   94 (352)
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeecCcccccCHHHHHHHHHHHHhCCeEEecCcEEeec
Confidence            45678999999999999999999999999999998 665321         22333334445566679999 88888655


Q ss_pred             EE---eCCCcEEEEEecCCCCCceEEEcCEEEEccCCC-CCC
Q psy14461        307 IS---SFDGMKGVRGFHPESKEPFADVFKTVVNAMEKK-FDF  344 (535)
Q Consensus       307 ~~---~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~-p~~  344 (535)
                      ..   ..++.......   +.+...+.+|.|++|+|.. |..
T Consensus        95 ~~~~~~~~~~~~~~~~---~~~~~~~~~d~lviAtGs~~~~~  133 (352)
T PRK12770         95 EPLHEEEGDEFVERIV---SLEELVKKYDAVLIATGTWKSRK  133 (352)
T ss_pred             cccccccccccccccC---CHHHHHhhCCEEEEEeCCCCCCc
Confidence            32   10111111110   1111147899999999983 543

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.03  E-value=8.3e-06  Score=76.68  Aligned_cols=102  Identities=15%  Similarity=0.172  Sum_probs=71.3

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC---ccCc-----------HHHH--H--HHHHhhhcCCeEE-cceE
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL---KHFD-----------QEMV--R--ILLSSLTKAGVSI-QCCV  302 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l---~~~~-----------~~~~--~--~~~~~l~~~gV~i-~~~~  302 (535)
                      +|+|||||+.|+.+|..|++.+.+|+++++ +...   ....           ....  .  .+.+.+...++++ .+.+
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~   80 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIRLNAK   80 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEEHHHT
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccccccccccccccccccccccccccccccccccccceEEEeeccc
Confidence            589999999999999999999999999976 4211   1000           0111  1  3344456789999 9999


Q ss_pred             EEEEEEeCCCc-----EEEEEecCCCCCceEEEcCEEEEccCCCCCCCCC
Q psy14461        303 IEKVISSFDGM-----KGVRGFHPESKEPFADVFKTVVNAMEKKFDFAAL  347 (535)
Q Consensus       303 v~~i~~~~~~~-----~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l  347 (535)
                      +.+++.. .+.     ..+....  .++..++.+|.+++|+|..|+...+
T Consensus        81 v~~i~~~-~~~~~~~~~~~~~~~--~~~~~~~~~d~lviAtG~~~~~~~i  127 (201)
T PF07992_consen   81 VVSIDPE-SKRVVCPAVTIQVVE--TGDGREIKYDYLVIATGSRPRTPNI  127 (201)
T ss_dssp             EEEEEES-TTEEEETCEEEEEEE--TTTEEEEEEEEEEEESTEEEEEESS
T ss_pred             ccccccc-ccccccCcccceeec--cCCceEecCCeeeecCccccceeec
Confidence            9999875 342     1222221  4445589999999999999876644

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=98.00  E-value=3e-05  Score=79.98  Aligned_cols=99  Identities=19%  Similarity=0.199  Sum_probs=75.5

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCC--CcEEEEEc-CcC-Cc-cC---------cHHHHHHHHHhhhcCC-eEEcceEEEE
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLG--VPVTLVYS-RRL-LK-HF---------DQEMVRILLSSLTKAG-VSIQCCVIEK  305 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g--~~Vtlv~~-~~~-l~-~~---------~~~~~~~~~~~l~~~g-V~i~~~~v~~  305 (535)
                      .++|||||||+.|+.+|..|.+.-  .+||+|++ +.. +. .+         +.++...+.+.++..+ |++...+|++
T Consensus         3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~~~V~~   82 (405)
T COG1252           3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQGEVTD   82 (405)
T ss_pred             CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccCceEEEEEEEEE
Confidence            578999999999999999999874  89999998 443 22 21         2445556777777555 8886678999


Q ss_pred             EEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCC
Q psy14461        306 VISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAAL  347 (535)
Q Consensus       306 i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l  347 (535)
                      |+.+   ..+|++.   ++.  .+++|.+++|+|..++....
T Consensus        83 ID~~---~k~V~~~---~~~--~i~YD~LVvalGs~~~~fgi  116 (405)
T COG1252          83 IDRD---AKKVTLA---DLG--EISYDYLVVALGSETNYFGI  116 (405)
T ss_pred             Eccc---CCEEEeC---CCc--cccccEEEEecCCcCCcCCC
Confidence            9864   2456664   444  79999999999999987654

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=97.99  E-value=4.8e-05  Score=79.29  Aligned_cols=96  Identities=9%  Similarity=0.139  Sum_probs=69.0

Q ss_pred             CcEEEECCChHHHHHHHHHHhCC--CcEEEEEc-CcCC---ccCc---------HHHHH-HHHHhhhcCCeEE-cceEEE
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLG--VPVTLVYS-RRLL---KHFD---------QEMVR-ILLSSLTKAGVSI-QCCVIE  304 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g--~~Vtlv~~-~~~l---~~~~---------~~~~~-~~~~~l~~~gV~i-~~~~v~  304 (535)
                      ++++|||||+.|+.+|..|++.+  .+||++.+ +...   +.+.         .++.. ...+.+++.||++ .+++|+
T Consensus         3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~   82 (377)
T PRK04965          3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHVFSQGQRADDLTRQSAGEFAEQFNLRLFPHTWVT   82 (377)
T ss_pred             CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHhhcCCHHHHHHhCCCEEECCCEEE
Confidence            58999999999999999998864  58999987 4321   2221         12211 1234456779999 999999


Q ss_pred             EEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCC
Q psy14461        305 KVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAA  346 (535)
Q Consensus       305 ~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~  346 (535)
                      +++.+  . ..|.+    +|+  ++++|.+++|||.+|....
T Consensus        83 ~id~~--~-~~v~~----~~~--~~~yd~LVlATG~~~~~p~  115 (377)
T PRK04965         83 DIDAE--A-QVVKS----QGN--QWQYDKLVLATGASAFVPP  115 (377)
T ss_pred             EEECC--C-CEEEE----CCe--EEeCCEEEECCCCCCCCCC
Confidence            99864  2 24444    455  7999999999999987544

>PRK10824 glutaredoxin-4; Provisional

Probab=97.98  E-value=2.4e-05  Score=66.27  Aligned_cols=64  Identities=28%  Similarity=0.259  Sum_probs=51.9

Q ss_pred             ChhHHHHhhhcCCcEEEEeCC-----CchhhHHHHHHHHHhcCCcceEEEEEeeCCccHHHHHHHHHhhCCCeE
Q psy14461         46 TPPAYISRLSYENRILIFTHA-----VLREENARAERYLNARGDRFAVLYLDRIGDEGILLEEELKRQTNQRRD  114 (535)
Q Consensus        46 ~l~~~~~~~i~~~~v~v~~k~-----~cp~~~~~~k~~~~~~~~~~~~~~v~iiG~G~aG~~~al~~~~~~~~V  114 (535)
                      ....+++.+|++++|++|+|+     +|| ||.++++++.+.+.++.++++.  .. + .+..++...++..+|
T Consensus         3 ~~~~~v~~~I~~~~Vvvf~Kg~~~~p~Cp-yc~~ak~lL~~~~i~~~~idi~--~d-~-~~~~~l~~~sg~~TV   71 (115)
T PRK10824          3 TTIEKIQRQIAENPILLYMKGSPKLPSCG-FSAQAVQALSACGERFAYVDIL--QN-P-DIRAELPKYANWPTF   71 (115)
T ss_pred             hHHHHHHHHHhcCCEEEEECCCCCCCCCc-hHHHHHHHHHHcCCCceEEEec--CC-H-HHHHHHHHHhCCCCC
Confidence            457789999999999999995     999 9999999999999887666554  22 3 488888887766554

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=97.97  E-value=6.4e-05  Score=80.17  Aligned_cols=94  Identities=18%  Similarity=0.153  Sum_probs=65.9

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEcCcCCcc------------------------------------Cc------
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKH------------------------------------FD------  280 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~l~~------------------------------------~~------  280 (535)
                      .|+|||||+.|+.+|..++++|.+|++++++.+...                                    ++      
T Consensus         4 DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~   83 (446)
T TIGR01424         4 DLFVIGAGSGGVRAARLAANHGAKVAIAEEPRVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFDWKKLLQ   83 (446)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcCHHHHHH
Confidence            599999999999999999999999999987322110                                    00      


Q ss_pred             ------HHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCC
Q psy14461        281 ------QEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAA  346 (535)
Q Consensus       281 ------~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~  346 (535)
                            .++.+.+++.+++.||++ .+ ++..++.   ..+.+.    .+|+  ++.+|.+|+|||.+|+...
T Consensus        84 ~~~~~~~~~~~~~~~~l~~~gV~~~~g-~~~~v~~---~~v~v~----~~g~--~~~~d~lIiATGs~p~~p~  146 (446)
T TIGR01424        84 KKDDEIARLSGLYKRLLANAGVELLEG-RARLVGP---NTVEVL----QDGT--TYTAKKILIAVGGRPQKPN  146 (446)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEecC---CEEEEe----cCCe--EEEcCEEEEecCCcCCCCC
Confidence                  112334455677789999 55 5555542   223332    2565  7999999999999997544

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=97.97  E-value=8.2e-05  Score=81.49  Aligned_cols=98  Identities=9%  Similarity=0.018  Sum_probs=72.9

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEcCcCC------------cc----CcHHHHHHHHHhhhcCCeEEcceEEEE
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLL------------KH----FDQEMVRILLSSLTKAGVSIQCCVIEK  305 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~l------------~~----~~~~~~~~~~~~l~~~gV~i~~~~v~~  305 (535)
                      -.|+|||||+.|+.+|..|++.|.+|+++++..+.            +.    ..+++.+.+.+.+++.|+++.+..+..
T Consensus         5 yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~~~~V~~   84 (555)
T TIGR03143         5 YDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDFGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFLQAEVLD   84 (555)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEeccEEEE
Confidence            36999999999999999999999999999972211            11    124566777777888899995567888


Q ss_pred             EEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCC
Q psy14461        306 VISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAA  346 (535)
Q Consensus       306 i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~  346 (535)
                      ++.. +....|...   +|   .+.+|.+|+|+|..|....
T Consensus        85 i~~~-~~~~~V~~~---~g---~~~a~~lVlATGa~p~~~~  118 (555)
T TIGR03143        85 VDFD-GDIKTIKTA---RG---DYKTLAVLIATGASPRKLG  118 (555)
T ss_pred             EEec-CCEEEEEec---CC---EEEEeEEEECCCCccCCCC
Confidence            8764 233445542   44   5889999999999987643

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=97.96  E-value=3.4e-05  Score=79.96  Aligned_cols=97  Identities=12%  Similarity=0.099  Sum_probs=69.8

Q ss_pred             cEEEECCChHHHHHHHHHHhC---CCcEEEEEc-CcCC--ccC---------cHHHHHHHHHhhhcCCeEEcceEEEEEE
Q psy14461        243 KTLVLGGSLMAVEIAATLNFL---GVPVTLVYS-RRLL--KHF---------DQEMVRILLSSLTKAGVSIQCCVIEKVI  307 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~---g~~Vtlv~~-~~~l--~~~---------~~~~~~~~~~~l~~~gV~i~~~~v~~i~  307 (535)
                      +|||||||+.|+.+|..|+++   +.+|+++++ +...  +.+         ..++...+.+.+++.||++...++++|+
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~~v~~id   80 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGARFVIAEATGID   80 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCCEEEEEEEEEEe
Confidence            589999999999999999644   579999998 4321  211         1233334456677789999334789998


Q ss_pred             EeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCC
Q psy14461        308 SSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAAL  347 (535)
Q Consensus       308 ~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l  347 (535)
                      .+  + ..|.+.   +|+  ++++|.+|+|+|.+|+...+
T Consensus        81 ~~--~-~~V~~~---~g~--~~~yD~LviAtG~~~~~~~i  112 (364)
T TIGR03169        81 PD--R-RKVLLA---NRP--PLSYDVLSLDVGSTTPLSGV  112 (364)
T ss_pred             cc--c-CEEEEC---CCC--cccccEEEEccCCCCCCCCC
Confidence            64  2 256663   676  69999999999999986544

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=97.94  E-value=4.1e-05  Score=87.36  Aligned_cols=87  Identities=18%  Similarity=0.181  Sum_probs=64.9

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC-------cc--CcHHHHHHHHHhhhcCCeEE-cceEEEEEEEe
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL-------KH--FDQEMVRILLSSLTKAGVSI-QCCVIEKVISS  309 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l-------~~--~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~  309 (535)
                      +++|+|||||+.|+.+|..|++.|.+|+++++ +.+.       |.  ++.+....-.+.+++.||++ .++.+ .+.  
T Consensus       539 gKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~GVe~~~gt~V-di~--  615 (1019)
T PRK09853        539 RKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFEFGCSP-DLT--  615 (1019)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHcCCEEEeCcee-EEE--
Confidence            47899999999999999999999999999998 6542       21  24455555556677889999 88776 222  


Q ss_pred             CCCcEEEEEecCCCCCceEEEcCEEEEccCCCCC
Q psy14461        310 FDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFD  343 (535)
Q Consensus       310 ~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~  343 (535)
                              ++   +..  ...+|.||+|||..+.
T Consensus       616 --------le---~L~--~~gYDaVILATGA~~~  636 (1019)
T PRK09853        616 --------VE---QLK--NEGYDYVVVAIGADKN  636 (1019)
T ss_pred             --------hh---hhe--eccCCEEEECcCCCCC
Confidence                    11   222  4568999999999854

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=97.94  E-value=4.4e-05  Score=87.05  Aligned_cols=98  Identities=10%  Similarity=0.135  Sum_probs=71.2

Q ss_pred             CcEEEECCChHHHHHHHHHHhC----CCcEEEEEc-CcCC--c-cCc--------HHHHHHHHHhhhcCCeEE-cceEEE
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFL----GVPVTLVYS-RRLL--K-HFD--------QEMVRILLSSLTKAGVSI-QCCVIE  304 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~----g~~Vtlv~~-~~~l--~-~~~--------~~~~~~~~~~l~~~gV~i-~~~~v~  304 (535)
                      ++|||||+|+.|+.+|..|+++    +.+||++++ +++.  + .+.        +++.....+.+++.||++ .+..+.
T Consensus         4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~~~~~l~~~~~~~~~~~gI~~~~g~~V~   83 (847)
T PRK14989          4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEKHGIKVLVGERAI   83 (847)
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCCCHHHccCCCHHHHHhCCCEEEcCCEEE
Confidence            5899999999999999999765    468999988 5432  1 111        122222244567789999 999999


Q ss_pred             EEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCC
Q psy14461        305 KVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAAL  347 (535)
Q Consensus       305 ~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l  347 (535)
                      +|+..   ...|.+   .+|+  ++++|.+|+|||.+|....+
T Consensus        84 ~Id~~---~~~V~~---~~G~--~i~yD~LVIATGs~p~~p~i  118 (847)
T PRK14989         84 TINRQ---EKVIHS---SAGR--TVFYDKLIMATGSYPWIPPI  118 (847)
T ss_pred             EEeCC---CcEEEE---CCCc--EEECCEEEECCCCCcCCCCC
Confidence            99753   234555   3676  79999999999999876543

>PRK08244 hypothetical protein; Provisional

Probab=97.94  E-value=9.8e-05  Score=79.84  Aligned_cols=98  Identities=16%  Similarity=0.132  Sum_probs=72.8

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc-----C------------------------------------
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH-----F------------------------------------  279 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~-----~------------------------------------  279 (535)
                      -.|+|||||++|+-+|..|++.|.+|+|+++ +.+.+.     +                                    
T Consensus         3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~   82 (493)
T PRK08244          3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDTRL   82 (493)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecccccC
Confidence            3699999999999999999999999999997 432110     0                                    


Q ss_pred             ----------------cHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCC
Q psy14461        280 ----------------DQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKF  342 (535)
Q Consensus       280 ----------------~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p  342 (535)
                                      ...+.+.+.+.+++.|+++ .++++++++.+ ++.+.+++.+ .+| ..++.+|+||.|.|..+
T Consensus        83 ~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~-~~~v~v~~~~-~~g-~~~i~a~~vVgADG~~S  159 (493)
T PRK08244         83 DFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQD-GDGVEVVVRG-PDG-LRTLTSSYVVGADGAGS  159 (493)
T ss_pred             CcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEc-CCeEEEEEEe-CCc-cEEEEeCEEEECCCCCh
Confidence                            0123344555566779999 99999999876 4566777653 235 24799999999999765

>TIGR00551 nadB L-aspartate oxidase

Probab=97.93  E-value=0.00023  Score=76.82  Aligned_cols=47  Identities=13%  Similarity=0.169  Sum_probs=36.2

Q ss_pred             CCceEcCCCCCcCCCCEEEeCCcCC-CCC---Cc----HHHHHHHHHHHHHHHhC
Q psy14461        359 KSYVVCNEKDQTSVGNIFAVGGIVH-GKP---NN----ASMAAISARLIIERLYG  405 (535)
Q Consensus       359 ~G~i~vd~~~~T~~~~IyA~GD~~~-~~~---~~----~~~A~~~g~~aa~~i~g  405 (535)
                      .|.|.+|...||++||+||+|+++. +..   .+    ...|.-.|++|++++..
T Consensus       333 ~GGi~vd~~~~t~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~~aa~  387 (488)
T TIGR00551       333 CGGISVDDHGRTTVPGLYAIGEVACTGLHGANRLASNSLLECLVFGWSAAEDISR  387 (488)
T ss_pred             cCCEEECCCCcccCCCEEECccccccccCcccccchhHHHHHHHHHHHHHHHHHh
Confidence            4679999999999999999999962 111   12    23577889999999875

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>TIGR00365 monothiol glutaredoxin, Grx4 family

Probab=97.93  E-value=3.9e-05  Score=63.41  Aligned_cols=61  Identities=21%  Similarity=0.258  Sum_probs=47.8

Q ss_pred             HHHHhhhcCCcEEEEeC-----CCchhhHHHHHHHHHhcCCcceEEEEEeeCCccHHHHHHHHHhhCCCeE
Q psy14461         49 AYISRLSYENRILIFTH-----AVLREENARAERYLNARGDRFAVLYLDRIGDEGILLEEELKRQTNQRRD  114 (535)
Q Consensus        49 ~~~~~~i~~~~v~v~~k-----~~cp~~~~~~k~~~~~~~~~~~~~~v~iiG~G~aG~~~al~~~~~~~~V  114 (535)
                      .++..++++++|++|+|     ++|| ||.++++++.+.+.++..+++  . ..++ +..++...++..+|
T Consensus         3 ~~v~~~i~~~~Vvvf~kg~~~~~~Cp-~C~~ak~lL~~~~i~~~~~di--~-~~~~-~~~~l~~~tg~~tv   68 (97)
T TIGR00365         3 ERIKEQIKENPVVLYMKGTPQFPQCG-FSARAVQILKACGVPFAYVNV--L-EDPE-IRQGIKEYSNWPTI   68 (97)
T ss_pred             HHHHHHhccCCEEEEEccCCCCCCCc-hHHHHHHHHHHcCCCEEEEEC--C-CCHH-HHHHHHHHhCCCCC
Confidence            57788999999999998     7899 999999999999988765544  3 3344 77778776665444

The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=97.92  E-value=3.2e-05  Score=89.06  Aligned_cols=91  Identities=16%  Similarity=0.125  Sum_probs=69.8

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCc---------cCcHHHHHHHHHhhhcCCeEE-cceEEEEEEE
Q psy14461        240 WPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLK---------HFDQEMVRILLSSLTKAGVSI-QCCVIEKVIS  308 (535)
Q Consensus       240 ~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~---------~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~  308 (535)
                      .+++|+|||+|+.|+.+|..|++.|.+||++++ +.+..         .++.++.+...+.+++.||++ +++.+-.   
T Consensus       305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG~---  381 (944)
T PRK12779        305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVGK---  381 (944)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEecc---
Confidence            468999999999999999999999999999998 65422         245677777778888899999 8875421   


Q ss_pred             eCCCcEEEEEecCCCCCceEEEcCEEEEccCCC-CCC
Q psy14461        309 SFDGMKGVRGFHPESKEPFADVFKTVVNAMEKK-FDF  344 (535)
Q Consensus       309 ~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~-p~~  344 (535)
                            .++++   +..  ...+|.|++|+|.. |..
T Consensus       382 ------dit~~---~l~--~~~yDAV~LAtGA~~pr~  407 (944)
T PRK12779        382 ------TATLE---DLK--AAGFWKIFVGTGAGLPTF  407 (944)
T ss_pred             ------EEeHH---Hhc--cccCCEEEEeCCCCCCCc
Confidence                  23332   333  45799999999984 553

>PRK06834 hypothetical protein; Provisional

Probab=97.92  E-value=0.00013  Score=78.70  Aligned_cols=97  Identities=18%  Similarity=0.147  Sum_probs=73.0

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC---c---cCc----------------------------------
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL---K---HFD----------------------------------  280 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l---~---~~~----------------------------------  280 (535)
                      ..|+|||+|++|+-+|..|++.|.+|+++++ +.+.   +   .+.                                  
T Consensus         4 ~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~   83 (488)
T PRK06834          4 HAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATRLD   83 (488)
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEecc
Confidence            4699999999999999999999999999998 4321   1   000                                  


Q ss_pred             ----------------HHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCC
Q psy14461        281 ----------------QEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFD  343 (535)
Q Consensus       281 ----------------~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~  343 (535)
                                      ..+.+.+.+.+++.|+++ .++++++++.+ ++.+.+++.   +|+  ++.+|+||.|.|..+.
T Consensus        84 ~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~-~~~v~v~~~---~g~--~i~a~~vVgADG~~S~  157 (488)
T PRK06834         84 ISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQD-DTGVDVELS---DGR--TLRAQYLVGCDGGRSL  157 (488)
T ss_pred             cccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEc-CCeEEEEEC---CCC--EEEeCEEEEecCCCCC
Confidence                            112233445556679999 99999999876 456667663   565  7999999999998765


Q ss_pred             C
Q psy14461        344 F  344 (535)
Q Consensus       344 ~  344 (535)
                      .
T Consensus       158 v  158 (488)
T PRK06834        158 V  158 (488)
T ss_pred             c
Confidence            4

>PRK06184 hypothetical protein; Provisional

Probab=97.91  E-value=0.00012  Score=79.22  Aligned_cols=97  Identities=19%  Similarity=0.196  Sum_probs=71.1

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc-----Cc-----------------------------------
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH-----FD-----------------------------------  280 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~-----~~-----------------------------------  280 (535)
                      -+|+|||||++|+-+|..|++.|.+|+++++ +.+.+.     +.                                   
T Consensus         4 ~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~   83 (502)
T PRK06184          4 TDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDDGSV   83 (502)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCCceE
Confidence            3699999999999999999999999999988 533110     00                                   


Q ss_pred             -------------------------HHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEE
Q psy14461        281 -------------------------QEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTV  334 (535)
Q Consensus       281 -------------------------~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~v  334 (535)
                                               ..+.+.+.+.+.+.|+++ .++++++++.+ ++.+.+++....+++  ++.+|.|
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~-~~~v~v~~~~~~~~~--~i~a~~v  160 (502)
T PRK06184         84 AESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQD-ADGVTARVAGPAGEE--TVRARYL  160 (502)
T ss_pred             EEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEc-CCcEEEEEEeCCCeE--EEEeCEE
Confidence                                     011233455566679999 99999999876 455667664322333  7999999


Q ss_pred             EEccCCC
Q psy14461        335 VNAMEKK  341 (535)
Q Consensus       335 i~a~G~~  341 (535)
                      |.|.|..
T Consensus       161 VgADG~~  167 (502)
T PRK06184        161 VGADGGR  167 (502)
T ss_pred             EECCCCc
Confidence            9999965

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.89  E-value=0.00013  Score=77.06  Aligned_cols=101  Identities=16%  Similarity=0.110  Sum_probs=71.8

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC----c---cCc--------------------------------
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL----K---HFD--------------------------------  280 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l----~---~~~--------------------------------  280 (535)
                      ..+|+|||||+.|+-+|..|++.|.+|+|+++ +.+.    +   .+.                                
T Consensus        18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~   97 (415)
T PRK07364         18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSDAD   97 (415)
T ss_pred             ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEeCC
Confidence            35799999999999999999999999999998 4321    0   000                                


Q ss_pred             -----------------------HHHHHHHHHhhhc-CCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEE
Q psy14461        281 -----------------------QEMVRILLSSLTK-AGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVV  335 (535)
Q Consensus       281 -----------------------~~~~~~~~~~l~~-~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi  335 (535)
                                             ..+.+.+.+.+.+ .+|++ .++++++++.+ ++.+.|++++  +++..++.+|+||
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~-~~~~~v~~~~--~~~~~~i~adlvI  174 (415)
T PRK07364         98 YPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQ-QDAATVTLEI--EGKQQTLQSKLVV  174 (415)
T ss_pred             CCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEec-CCeeEEEEcc--CCcceEEeeeEEE
Confidence                                   1111222333333 37999 89999999776 4566777752  3433479999999


Q ss_pred             EccCCCCCC
Q psy14461        336 NAMEKKFDF  344 (535)
Q Consensus       336 ~a~G~~p~~  344 (535)
                      .|.|.....
T Consensus       175 gADG~~S~v  183 (415)
T PRK07364        175 AADGARSPI  183 (415)
T ss_pred             EeCCCCchh
Confidence            999987755

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=97.88  E-value=0.00013  Score=76.41  Aligned_cols=99  Identities=17%  Similarity=0.141  Sum_probs=73.8

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC-----c-----cCc-----------------------------
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL-----K-----HFD-----------------------------  280 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l-----~-----~~~-----------------------------  280 (535)
                      ..+|+|||||+.|+-+|..|++.|.+|+++++ +.+-     +     .+.                             
T Consensus         6 ~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~   85 (392)
T PRK08773          6 RRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRRMRV   85 (392)
T ss_pred             CCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccEEEE
Confidence            35799999999999999999999999999998 4210     0     000                             


Q ss_pred             ---------------------------HHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcC
Q psy14461        281 ---------------------------QEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFK  332 (535)
Q Consensus       281 ---------------------------~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D  332 (535)
                                                 ..+.+.+.+.+++.|+++ .++++++++.+ ++.+.|++.   +|+  ++.+|
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~-~~~v~v~~~---~g~--~~~a~  159 (392)
T PRK08773         86 WDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQD-ADRVRLRLD---DGR--RLEAA  159 (392)
T ss_pred             EeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEec-CCeEEEEEC---CCC--EEEeC
Confidence                                       112233444556679999 99999999876 455667663   676  79999


Q ss_pred             EEEEccCCCCCCC
Q psy14461        333 TVVNAMEKKFDFA  345 (535)
Q Consensus       333 ~vi~a~G~~p~~~  345 (535)
                      .||.|.|..++..
T Consensus       160 ~vV~AdG~~S~vr  172 (392)
T PRK08773        160 LAIAADGAASTLR  172 (392)
T ss_pred             EEEEecCCCchHH
Confidence            9999999988643

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.88  E-value=0.00012  Score=77.83  Aligned_cols=96  Identities=17%  Similarity=0.128  Sum_probs=62.4

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc-------Cc--------------HHH-----------HHHHHH
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH-------FD--------------QEM-----------VRILLS  289 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~-------~~--------------~~~-----------~~~~~~  289 (535)
                      +|+|||||+.|+.+|..++++|.+|+++++ +.++..       .+              +++           .....+
T Consensus         5 dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (438)
T PRK07251          5 DLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIGCIPTKTLLVAAEKNLSFEQVMATKNTVTSRLRGKNYA   84 (438)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecCccccchHhhhhhhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            699999999999999999999999999998 532110       00              111           111223


Q ss_pred             hhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCC
Q psy14461        290 SLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAA  346 (535)
Q Consensus       290 ~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~  346 (535)
                      .+.+.||++ .+.. ..++   +.  +|++..  .+...++.+|.+|+|||.+|+...
T Consensus        85 ~~~~~gV~~~~g~~-~~~~---~~--~v~v~~--~~~~~~~~~d~vViATGs~~~~p~  134 (438)
T PRK07251         85 MLAGSGVDLYDAEA-HFVS---NK--VIEVQA--GDEKIELTAETIVINTGAVSNVLP  134 (438)
T ss_pred             HHHhCCCEEEEEEE-EEcc---CC--EEEEee--CCCcEEEEcCEEEEeCCCCCCCCC
Confidence            456678888 5442 2221   22  344431  222347999999999999987644

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=97.88  E-value=0.00014  Score=74.92  Aligned_cols=92  Identities=22%  Similarity=0.264  Sum_probs=65.0

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc--CcCCc-----c-------------------------------------
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS--RRLLK-----H-------------------------------------  278 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~--~~~l~-----~-------------------------------------  278 (535)
                      +|+|||||..|+|+|..+++.|.+|.++..  +.+..     .                                     
T Consensus         1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s   80 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS   80 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence            489999999999999999999999999954  33211     0                                     


Q ss_pred             -----------Cc-HHHHHHHHHhhhc-CCeEEcceEEEEEEEeCCCcE-EEEEecCCCCCceEEEcCEEEEccCC
Q psy14461        279 -----------FD-QEMVRILLSSLTK-AGVSIQCCVIEKVISSFDGMK-GVRGFHPESKEPFADVFKTVVNAMEK  340 (535)
Q Consensus       279 -----------~~-~~~~~~~~~~l~~-~gV~i~~~~v~~i~~~~~~~~-~v~~~~~~~G~~~~~~~D~vi~a~G~  340 (535)
                                 .| ..+.+.+++.+++ .++++...+|+++..+ ++++ .|.+   .+|+  .+.+|.||+|||.
T Consensus        81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~~~V~~l~~e-~~~v~GV~~---~~g~--~~~a~~vVlaTGt  150 (392)
T PF01134_consen   81 KGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQGEVTDLIVE-NGKVKGVVT---KDGE--EIEADAVVLATGT  150 (392)
T ss_dssp             S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEES-EEEEEEC-TTEEEEEEE---TTSE--EEEECEEEE-TTT
T ss_pred             CCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEEcccceEEec-CCeEEEEEe---CCCC--EEecCEEEEeccc
Confidence                       01 2344556666665 6899955689999876 4554 3555   4787  8999999999998

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=97.88  E-value=2.5e-05  Score=83.22  Aligned_cols=91  Identities=18%  Similarity=0.145  Sum_probs=68.1

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC-------c--cCcHHHHHHHHHhhhcCCeEE-cceEEEEEEE
Q psy14461        240 WPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL-------K--HFDQEMVRILLSSLTKAGVSI-QCCVIEKVIS  308 (535)
Q Consensus       240 ~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l-------~--~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~  308 (535)
                      .+++|+|||+|+.|+.+|..|++.|.+|+++++ +.+.       +  .+++++.....+.+++.||++ .+..+.    
T Consensus       132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~----  207 (449)
T TIGR01316       132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKLGVTFRMNFLVG----  207 (449)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeeecCCCccCCHHHHHHHHHHHHhCCcEEEeCCccC----
Confidence            357899999999999999999999999999998 6541       2  245677777777788899999 887441    


Q ss_pred             eCCCcEEEEEecCCCCCceEEEcCEEEEccCC-CCCCC
Q psy14461        309 SFDGMKGVRGFHPESKEPFADVFKTVVNAMEK-KFDFA  345 (535)
Q Consensus       309 ~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~-~p~~~  345 (535)
                           ..+.+.   +.   ...+|.||+|+|. .|...
T Consensus       208 -----~~v~~~---~~---~~~yd~viiAtGa~~p~~~  234 (449)
T TIGR01316       208 -----KTATLE---EL---FSQYDAVFIGTGAGLPKLM  234 (449)
T ss_pred             -----CcCCHH---HH---HhhCCEEEEeCCCCCCCcC
Confidence                 113331   22   2468999999997 56543

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK08163 salicylate hydroxylase; Provisional

Probab=97.85  E-value=0.00017  Score=75.50  Aligned_cols=98  Identities=13%  Similarity=0.082  Sum_probs=71.0

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc------------------C-c--------------------
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH------------------F-D--------------------  280 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~------------------~-~--------------------  280 (535)
                      +.+|+|||||..|+-+|..|++.|.+|+++++ +.+...                  + +                    
T Consensus         4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~   83 (396)
T PRK08163          4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMDAVDA   83 (396)
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEeCCCC
Confidence            56899999999999999999999999999998 532110                  0 0                    


Q ss_pred             -------------------------HHHHHHHHHhhhcC-CeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCE
Q psy14461        281 -------------------------QEMVRILLSSLTKA-GVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKT  333 (535)
Q Consensus       281 -------------------------~~~~~~~~~~l~~~-gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~  333 (535)
                                               .++.+.+.+.+.+. ++++ .++.+++++.+ ++.+.+++.   +|+  ++.+|.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~-~~~v~v~~~---~g~--~~~ad~  157 (396)
T PRK08163         84 EEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQD-GDGVTVFDQ---QGN--RWTGDA  157 (396)
T ss_pred             CEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecC-CCceEEEEc---CCC--EEecCE
Confidence                                     01112233333344 4899 99999999865 455666663   676  799999


Q ss_pred             EEEccCCCCCC
Q psy14461        334 VVNAMEKKFDF  344 (535)
Q Consensus       334 vi~a~G~~p~~  344 (535)
                      ||.|.|.....
T Consensus       158 vV~AdG~~S~~  168 (396)
T PRK08163        158 LIGCDGVKSVV  168 (396)
T ss_pred             EEECCCcChHH
Confidence            99999987655

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=97.84  E-value=3.6e-05  Score=82.34  Aligned_cols=90  Identities=17%  Similarity=0.120  Sum_probs=68.8

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC-------c--cCcHHHHHHHHHhhhcCCeEE-cceEEEEEE
Q psy14461        239 AWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL-------K--HFDQEMVRILLSSLTKAGVSI-QCCVIEKVI  307 (535)
Q Consensus       239 ~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l-------~--~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~  307 (535)
                      ..+++|+|||||+.|+++|..|++.|.+|+++++ +.+.       |  ..+.++.....+.+++.||++ .++.+..  
T Consensus       138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~--  215 (457)
T PRK11749        138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKLGVEIRTNTEVGR--  215 (457)
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeeccCCCccCCHHHHHHHHHHHHHcCCEEEeCCEECC--
Confidence            4568999999999999999999999999999998 6542       2  135677777778888899999 8876521  


Q ss_pred             EeCCCcEEEEEecCCCCCceEEEcCEEEEccCCC-CC
Q psy14461        308 SSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKK-FD  343 (535)
Q Consensus       308 ~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~-p~  343 (535)
                             .+++.   +.   .+.+|.|++|+|.. |.
T Consensus       216 -------~v~~~---~~---~~~~d~vvlAtGa~~~~  239 (457)
T PRK11749        216 -------DITLD---EL---RAGYDAVFIGTGAGLPR  239 (457)
T ss_pred             -------ccCHH---HH---HhhCCEEEEccCCCCCC
Confidence                   12221   22   36799999999985 44

>PLN02463 lycopene beta cyclase

Probab=97.83  E-value=0.00016  Score=76.76  Aligned_cols=96  Identities=15%  Similarity=0.130  Sum_probs=71.0

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcC-Ccc-C---------------------------------------
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRL-LKH-F---------------------------------------  279 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~-l~~-~---------------------------------------  279 (535)
                      -+|+|||||+.|+-+|..|++.|.+|.++++ +.. .|. .                                       
T Consensus        29 ~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~~~y  108 (447)
T PLN02463         29 VDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDLDRPY  108 (447)
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCccccCcc
Confidence            3799999999999999999999999999987 421 111 0                                       


Q ss_pred             ----cHHHHHHHHHhhhcCCeEEcceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCC
Q psy14461        280 ----DQEMVRILLSSLTKAGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFD  343 (535)
Q Consensus       280 ----~~~~~~~~~~~l~~~gV~i~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~  343 (535)
                          ..++.+.+.+.+.+.|+++...+|++|+.. ++...|++.   +|+  ++++|.||.|+|..+.
T Consensus       109 ~~V~R~~L~~~Ll~~~~~~GV~~~~~~V~~I~~~-~~~~~V~~~---dG~--~i~A~lVI~AdG~~s~  170 (447)
T PLN02463        109 GRVNRKKLKSKMLERCIANGVQFHQAKVKKVVHE-ESKSLVVCD---DGV--KIQASLVLDATGFSRC  170 (447)
T ss_pred             eeEEHHHHHHHHHHHHhhcCCEEEeeEEEEEEEc-CCeEEEEEC---CCC--EEEcCEEEECcCCCcC
Confidence                012224445555667899844688888876 455667763   676  7999999999998764

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=97.82  E-value=0.002  Score=65.79  Aligned_cols=57  Identities=19%  Similarity=0.136  Sum_probs=43.2

Q ss_pred             cHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEE-EEEecCCCCCceEEEcCEEEEccCCCCC
Q psy14461        280 DQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKG-VRGFHPESKEPFADVFKTVVNAMEKKFD  343 (535)
Q Consensus       280 ~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~-v~~~~~~~G~~~~~~~D~vi~a~G~~p~  343 (535)
                      ...+.+.+.+.+++.|+++ .+++|++|..+ ++.+. |.+.   +|   .+.+|.||+|+|...+
T Consensus       146 ~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~-~~~v~gv~~~---~g---~i~ad~vV~a~G~~s~  204 (358)
T PF01266_consen  146 PRRLIQALAAEAQRAGVEIRTGTEVTSIDVD-GGRVTGVRTS---DG---EIRADRVVLAAGAWSP  204 (358)
T ss_dssp             HHHHHHHHHHHHHHTT-EEEESEEEEEEEEE-TTEEEEEEET---TE---EEEECEEEE--GGGHH
T ss_pred             ccchhhhhHHHHHHhhhhccccccccchhhc-cccccccccc---cc---ccccceeEecccccce
Confidence            4667788888888899999 99999999987 56665 7773   55   4999999999997543

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=97.82  E-value=0.00019  Score=75.28  Aligned_cols=96  Identities=15%  Similarity=0.183  Sum_probs=71.9

Q ss_pred             cEEEECCChHHHHHHHHHHhCC--CcEEEEEc-CcCCcc-------C---------------------------------
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLG--VPVTLVYS-RRLLKH-------F---------------------------------  279 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g--~~Vtlv~~-~~~l~~-------~---------------------------------  279 (535)
                      +|+|||||+.|+-+|..|++.|  .+|+++++ +...+.       +                                 
T Consensus         3 dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~   82 (403)
T PRK07333          3 DVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITDSR   82 (403)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEeCC
Confidence            5999999999999999999995  89999997 431100       0                                 


Q ss_pred             ---------------------------cHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEc
Q psy14461        280 ---------------------------DQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVF  331 (535)
Q Consensus       280 ---------------------------~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~  331 (535)
                                                 ..++.+.+.+.+.+.|+++ .++++++++.+ ++.+.|++.   +|+  ++.+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~-~~~v~v~~~---~g~--~~~a  156 (403)
T PRK07333         83 TSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETR-DEGVTVTLS---DGS--VLEA  156 (403)
T ss_pred             CCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEc-CCEEEEEEC---CCC--EEEe
Confidence                                       0122344455566679999 99999999876 455667763   676  7999


Q ss_pred             CEEEEccCCCCCC
Q psy14461        332 KTVVNAMEKKFDF  344 (535)
Q Consensus       332 D~vi~a~G~~p~~  344 (535)
                      |+||.|.|..+..
T Consensus       157 d~vI~AdG~~S~v  169 (403)
T PRK07333        157 RLLVAADGARSKL  169 (403)
T ss_pred             CEEEEcCCCChHH
Confidence            9999999987654

>PRK07588 hypothetical protein; Provisional

Probab=97.82  E-value=0.00024  Score=74.35  Aligned_cols=97  Identities=14%  Similarity=0.072  Sum_probs=70.5

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc----------------Cc-------------------------
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH----------------FD-------------------------  280 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~----------------~~-------------------------  280 (535)
                      +|+|||||+.|+-+|..|++.|.+|+++++ +.+-+.                ++                         
T Consensus         2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g~~~   81 (391)
T PRK07588          2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTGRRK   81 (391)
T ss_pred             eEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCCCEE
Confidence            699999999999999999999999999997 432110                00                         


Q ss_pred             ---------------------HHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEcc
Q psy14461        281 ---------------------QEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAM  338 (535)
Q Consensus       281 ---------------------~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~  338 (535)
                                           .++.+.+.+.+ ..++++ .++++++++.+ ++.+.|+++   +|+  ++++|+||-|.
T Consensus        82 ~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~-~~~v~i~~~~~v~~i~~~-~~~v~v~~~---~g~--~~~~d~vIgAD  154 (391)
T PRK07588         82 ADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAI-DGQVETIFDDSIATIDEH-RDGVRVTFE---RGT--PRDFDLVIGAD  154 (391)
T ss_pred             EEecHHHccccCCCceEEEEHHHHHHHHHHhh-hcCeEEEeCCEEeEEEEC-CCeEEEEEC---CCC--EEEeCEEEECC
Confidence                                 00111122222 346999 99999999876 456777774   677  68999999999


Q ss_pred             CCCCCCCC
Q psy14461        339 EKKFDFAA  346 (535)
Q Consensus       339 G~~p~~~~  346 (535)
                      |.......
T Consensus       155 G~~S~vR~  162 (391)
T PRK07588        155 GLHSHVRR  162 (391)
T ss_pred             CCCccchh
Confidence            98776643

>KOG1399|consensus

Probab=97.82  E-value=0.00037  Score=73.42  Aligned_cols=107  Identities=15%  Similarity=0.083  Sum_probs=77.8

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccC---------------------------------------
Q psy14461        240 WPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHF---------------------------------------  279 (535)
Q Consensus       240 ~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~---------------------------------------  279 (535)
                      .+++|+|||+|++|+-.|..|.+.|.+|++++| +.+...+                                       
T Consensus         5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~   84 (448)
T KOG1399|consen    5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPR   84 (448)
T ss_pred             CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCcc
Confidence            368999999999999999999999999999998 6442100                                       


Q ss_pred             ---c-HHHHHHHHHhhhcCCe--EE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCC--CCCCCC
Q psy14461        280 ---D-QEMVRILLSSLTKAGV--SI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKK--FDFAAL  347 (535)
Q Consensus       280 ---~-~~~~~~~~~~l~~~gV--~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~--p~~~~l  347 (535)
                         . .++.++++...+.-++  .+ .++.+.+++...+++..|...+...+ ..+.-+|.|++|+|.-  |+.+..
T Consensus        85 ~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~-~~~~ifd~VvVctGh~~~P~~P~~  160 (448)
T KOG1399|consen   85 YFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQ-IEEEIFDAVVVCTGHYVEPRIPQI  160 (448)
T ss_pred             cCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcc-eeEEEeeEEEEcccCcCCCCCCcC
Confidence               0 2566677777666665  45 77777888776226788888642121 2477899999999987  555543

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=97.81  E-value=9.2e-05  Score=84.28  Aligned_cols=96  Identities=8%  Similarity=0.054  Sum_probs=70.3

Q ss_pred             EEEECCChHHHHHHHHHHhCC---CcEEEEEc-CcCC--c-cCc---------HHHHHHHHHhhhcCCeEE-cceEEEEE
Q psy14461        244 TLVLGGSLMAVEIAATLNFLG---VPVTLVYS-RRLL--K-HFD---------QEMVRILLSSLTKAGVSI-QCCVIEKV  306 (535)
Q Consensus       244 vvViGgG~~g~e~A~~l~~~g---~~Vtlv~~-~~~l--~-~~~---------~~~~~~~~~~l~~~gV~i-~~~~v~~i  306 (535)
                      |||||+|+.|+.+|..|++++   .+||++++ +.+.  + .+.         +++.....+.+++.||++ .++.|++|
T Consensus         1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~I   80 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGITLYTGETVIQI   80 (785)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCCEEEcCCeEEEE
Confidence            689999999999999998764   58999998 5531  1 111         122222345567789999 99999999


Q ss_pred             EEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCC
Q psy14461        307 ISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAAL  347 (535)
Q Consensus       307 ~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l  347 (535)
                      +..   ...|.+.   +|+  ++++|.+|+|||..|+...+
T Consensus        81 d~~---~k~V~~~---~g~--~~~yD~LVlATGs~p~~p~i  113 (785)
T TIGR02374        81 DTD---QKQVITD---AGR--TLSYDKLILATGSYPFILPI  113 (785)
T ss_pred             ECC---CCEEEEC---CCc--EeeCCEEEECCCCCcCCCCC
Confidence            864   2345553   676  79999999999999876543

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=97.81  E-value=0.00022  Score=77.92  Aligned_cols=100  Identities=14%  Similarity=0.118  Sum_probs=72.5

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCc-----cC-----------------------------------
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLK-----HF-----------------------------------  279 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~-----~~-----------------------------------  279 (535)
                      ..+|+|||+|++|+-+|..|++.|.+|+++++ +.+.+     .+                                   
T Consensus        10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~g~   89 (538)
T PRK06183         10 DTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDAKGR   89 (538)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcCCCC
Confidence            35799999999999999999999999999998 53211     00                                   


Q ss_pred             -----c-----------------HHHHHHHHHhhhc-CCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEE
Q psy14461        280 -----D-----------------QEMVRILLSSLTK-AGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVV  335 (535)
Q Consensus       280 -----~-----------------~~~~~~~~~~l~~-~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi  335 (535)
                           +                 +++.+.+.+.+.+ .|+++ .++++++++.+ ++.+++++++ .+|++.++.+|+||
T Consensus        90 ~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~-~~~v~v~~~~-~~G~~~~i~ad~vV  167 (538)
T PRK06183         90 CLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQD-DDGVTVTLTD-ADGQRETVRARYVV  167 (538)
T ss_pred             EEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEc-CCeEEEEEEc-CCCCEEEEEEEEEE
Confidence                 0                 0111223333434 48999 99999999876 4667777753 25755689999999


Q ss_pred             EccCCCC
Q psy14461        336 NAMEKKF  342 (535)
Q Consensus       336 ~a~G~~p  342 (535)
                      -|.|...
T Consensus       168 gADG~~S  174 (538)
T PRK06183        168 GCDGANS  174 (538)
T ss_pred             ecCCCch
Confidence            9999654

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=97.80  E-value=0.00018  Score=77.08  Aligned_cols=97  Identities=15%  Similarity=0.035  Sum_probs=66.0

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc------CcH-------------------------------H-
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH------FDQ-------------------------------E-  282 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~------~~~-------------------------------~-  282 (535)
                      -.|+|||||+.|+.+|..|+++|.+|+++++ +.+...      .+.                               + 
T Consensus         6 yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   85 (461)
T PRK05249          6 YDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKLRITFADL   85 (461)
T ss_pred             ccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcCccCHHHH
Confidence            4699999999999999999999999999998 543210      000                               0 


Q ss_pred             ----------HHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCC
Q psy14461        283 ----------MVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFA  345 (535)
Q Consensus       283 ----------~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~  345 (535)
                                ..+.+.+.+++.||++ .+. +..++   .+.+.|..   .+|+..++.+|.+|+|||.+|...
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~~~---~~~~~v~~---~~g~~~~~~~d~lviATGs~p~~p  152 (461)
T PRK05249         86 LARADHVINKQVEVRRGQYERNRVDLIQGR-ARFVD---PHTVEVEC---PDGEVETLTADKIVIATGSRPYRP  152 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCEEEEEE-EEEec---CCEEEEEe---CCCceEEEEcCEEEEcCCCCCCCC
Confidence                      0112334456678888 553 33332   23455554   256545799999999999998754

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=97.80  E-value=4.5e-05  Score=81.71  Aligned_cols=90  Identities=13%  Similarity=0.164  Sum_probs=68.5

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC-------c--cCcHHHHHHHHHhhhcCCeEE-cceEEEEEEE
Q psy14461        240 WPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL-------K--HFDQEMVRILLSSLTKAGVSI-QCCVIEKVIS  308 (535)
Q Consensus       240 ~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l-------~--~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~  308 (535)
                      .+++|+|||+|++|+.+|..|++.|.+|+++++ +.+.       |  .+++++.....+.+++.|+++ .++.+..-  
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~--  217 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRD--  217 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCc--
Confidence            458999999999999999999999999999998 6542       2  246667677777888999999 88866310  


Q ss_pred             eCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCC
Q psy14461        309 SFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDF  344 (535)
Q Consensus       309 ~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~  344 (535)
                             +.+    ++.  ...+|.||+|+|..+..
T Consensus       218 -------~~~----~~~--~~~~D~vilAtGa~~~~  240 (467)
T TIGR01318       218 -------ISL----DDL--LEDYDAVFLGVGTYRSM  240 (467)
T ss_pred             -------cCH----HHH--HhcCCEEEEEeCCCCCC
Confidence                   112    111  34699999999998753

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=97.79  E-value=0.00079  Score=67.63  Aligned_cols=99  Identities=18%  Similarity=0.106  Sum_probs=72.1

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCc-EEEEEcCcCC------------c-----cCcHHHHHHHHHhhhcCCeEEcceEE
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVP-VTLVYSRRLL------------K-----HFDQEMVRILLSSLTKAGVSIQCCVI  303 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~-Vtlv~~~~~l------------~-----~~~~~~~~~~~~~l~~~gV~i~~~~v  303 (535)
                      -+|+|||||+.|+-+|.++.|.+.+ +.|++...+.            |     ...+++.+.+.+..+..++++....+
T Consensus         4 ~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~~~~v   83 (305)
T COG0492           4 YDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEIVEDEV   83 (305)
T ss_pred             eeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCeEEEEEEE
Confidence            3699999999999999999999988 5555442111            1     13467777778877888999933778


Q ss_pred             EEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCC
Q psy14461        304 EKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAAL  347 (535)
Q Consensus       304 ~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l  347 (535)
                      .+++.. ++.+.|++.   +|   +++++.||+|+|..+....+
T Consensus        84 ~~v~~~-~~~F~v~t~---~~---~~~ak~vIiAtG~~~~~~~~  120 (305)
T COG0492          84 EKVELE-GGPFKVKTD---KG---TYEAKAVIIATGAGARKLGV  120 (305)
T ss_pred             EEEeec-CceEEEEEC---CC---eEEEeEEEECcCCcccCCCC
Confidence            888764 225666662   55   39999999999988765443

>PRK06475 salicylate hydroxylase; Provisional

Probab=97.79  E-value=0.00028  Score=74.08  Aligned_cols=101  Identities=15%  Similarity=0.148  Sum_probs=71.5

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc----------------C--c----------------------
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH----------------F--D----------------------  280 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~----------------~--~----------------------  280 (535)
                      ++|+|||||..|+-+|..|++.|.+|+++++ +.+...                +  .                      
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g~~~~   82 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKAR   82 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecCCCcc
Confidence            7899999999999999999999999999998 532100                0  0                      


Q ss_pred             ------------------------HHHHHHHHHhhhc-CCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEE
Q psy14461        281 ------------------------QEMVRILLSSLTK-AGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTV  334 (535)
Q Consensus       281 ------------------------~~~~~~~~~~l~~-~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~v  334 (535)
                                              .++.+.+.+.+.+ .++++ .++++++++.+ ++.+.+++....+++  ++++|+|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~-~~~v~v~~~~~~~~~--~~~adlv  159 (400)
T PRK06475         83 PLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQT-GNSITATIIRTNSVE--TVSAAYL  159 (400)
T ss_pred             eEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecC-CCceEEEEEeCCCCc--EEecCEE
Confidence                                    0111223333333 47899 99999999765 456777765322334  7899999


Q ss_pred             EEccCCCCCCC
Q psy14461        335 VNAMEKKFDFA  345 (535)
Q Consensus       335 i~a~G~~p~~~  345 (535)
                      |-|-|......
T Consensus       160 IgADG~~S~vR  170 (400)
T PRK06475        160 IACDGVWSMLR  170 (400)
T ss_pred             EECCCccHhHH
Confidence            99999876543

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=97.78  E-value=0.00029  Score=73.70  Aligned_cols=98  Identities=18%  Similarity=0.153  Sum_probs=75.2

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-C-cCCcc-----C-----------c-----------------------
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-R-RLLKH-----F-----------D-----------------------  280 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~-~~l~~-----~-----------~-----------------------  280 (535)
                      .+|+|||||++|+-+|..|++.|.+|+|+++ + .+.+.     +           +                       
T Consensus         3 ~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~~   82 (387)
T COG0654           3 LDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGGR   82 (387)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCCc
Confidence            5799999999999999999999999999998 3 22110     0           0                       


Q ss_pred             ---------------------HHHHHHHHHhhhcCC-eEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEc
Q psy14461        281 ---------------------QEMVRILLSSLTKAG-VSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNA  337 (535)
Q Consensus       281 ---------------------~~~~~~~~~~l~~~g-V~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a  337 (535)
                                           .++.+.+.+.+.+.+ |++ .+++|+.++.+ ++.+.+++..  +|+  ++++|++|-|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~-~~~v~v~l~~--dG~--~~~a~llVgA  157 (387)
T COG0654          83 RLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQD-GDGVTVTLSF--DGE--TLDADLLVGA  157 (387)
T ss_pred             eeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEc-CCceEEEEcC--CCc--EEecCEEEEC
Confidence                                 234455566666555 999 99999999987 4666777742  777  8999999999


Q ss_pred             cCCCCCC
Q psy14461        338 MEKKFDF  344 (535)
Q Consensus       338 ~G~~p~~  344 (535)
                      -|.....
T Consensus       158 DG~~S~v  164 (387)
T COG0654         158 DGANSAV  164 (387)
T ss_pred             CCCchHH
Confidence            9976554

>KOG0399|consensus

Probab=97.78  E-value=0.00033  Score=78.18  Aligned_cols=185  Identities=15%  Similarity=0.089  Sum_probs=115.9

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCc---------cCcHHHHHHHHHhhhcCCeEE-cceEEEEEEE
Q psy14461        240 WPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLK---------HFDQEMVRILLSSLTKAGVSI-QCCVIEKVIS  308 (535)
Q Consensus       240 ~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~---------~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~  308 (535)
                      .+++|.|||+|+.|+-+|..|.+.|..|++.+| +++..         .+|+.+.++-.+.|.++||+| +|+.+-+-  
T Consensus      1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk~-- 1861 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGKH-- 1861 (2142)
T ss_pred             cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeecccccc--
Confidence            468999999999999999999999999999999 76532         357778888888999999999 88776321  


Q ss_pred             eCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccc---cCeee-----cCCCceEcCC-----CCCcCCCCE
Q psy14461        309 SFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHH---IGVDI-----KKKSYVVCNE-----KDQTSVGNI  375 (535)
Q Consensus       309 ~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~---~gl~~-----~~~G~i~vd~-----~~~T~~~~I  375 (535)
                             +.+    |+-  .-+.|+|++|+|..-.-++- .+.   .|+..     ..+-.-..|.     +....-+.|
T Consensus      1862 -------vs~----d~l--~~~~daiv~a~gst~prdlp-v~grd~kgv~fame~l~~ntk~lld~~~d~~~~~~~gkkv 1927 (2142)
T KOG0399|consen 1862 -------VSL----DEL--KKENDAIVLATGSTTPRDLP-VPGRDLKGVHFAMEFLEKNTKSLLDSVLDGNYISAKGKKV 1927 (2142)
T ss_pred             -------ccH----HHH--hhccCeEEEEeCCCCCcCCC-CCCccccccHHHHHHHHHhHHhhhccccccceeccCCCeE
Confidence                   222    222  34679999999976443321 111   11110     0000011121     122233556


Q ss_pred             EEeCCcCCCCCCcHHHHHHHHHHHHHHH--hCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCC
Q psy14461        376 FAVGGIVHGKPNNASMAAISARLIIERL--YGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADG  444 (535)
Q Consensus       376 yA~GD~~~~~~~~~~~A~~~g~~aa~~i--~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~  444 (535)
                      .++|--- .+..-.-..+++|.....|+  +-.+ ++......||-.|  |.+-+|-+.-+||++.||.+.
T Consensus      1928 ivigggd-tg~dcigtsvrhg~~sv~n~ellp~p-p~~ra~~npwpqw--prvfrvdygh~e~~~~~g~dp 1994 (2142)
T KOG0399|consen 1928 IVIGGGD-TGTDCIGTSVRHGCKSVGNFELLPQP-PPERAPDNPWPQW--PRVFRVDYGHAEAKEHYGSDP 1994 (2142)
T ss_pred             EEECCCC-ccccccccchhhccceecceeecCCC-CcccCCCCCCccC--ceEEEeecchHHHHHHhCCCc
Confidence            6665322 12222335677776655554  2222 2222334678777  888889999999999988643

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=97.78  E-value=0.00021  Score=76.83  Aligned_cols=99  Identities=16%  Similarity=0.118  Sum_probs=65.9

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEcCcCC---------c---------------------------cCc-HH--
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLL---------K---------------------------HFD-QE--  282 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~l---------~---------------------------~~~-~~--  282 (535)
                      -+|+|||||+.|+.+|..++++|.+|+++++..+.         |                           ..+ +.  
T Consensus         5 ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~   84 (472)
T PRK05976          5 YDLVIIGGGPGGYVAAIRAGQLGLKTALVEKGKLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPALDFAKVQ   84 (472)
T ss_pred             ccEEEECCCHHHHHHHHHHHhCCCeEEEEEccCCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCccCHHHHH
Confidence            47999999999999999999999999999973210         0                           000 00  


Q ss_pred             ---------HHHHHHHhhhcCCeEE-cceEEEEEEEe----CCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCC
Q psy14461        283 ---------MVRILLSSLTKAGVSI-QCCVIEKVISS----FDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDF  344 (535)
Q Consensus       283 ---------~~~~~~~~l~~~gV~i-~~~~v~~i~~~----~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~  344 (535)
                               +.+...+.+++.||++ .+ .++.++..    .++.+.|.+.   +|+..++.+|.+++|||.+|+.
T Consensus        85 ~~~~~~~~~l~~~~~~~~~~~gv~~~~g-~a~~i~~~~~~~~~~~~~v~~~---~g~~~~~~~d~lViATGs~p~~  156 (472)
T PRK05976         85 ERKDGIVDRLTKGVAALLKKGKIDVFHG-IGRILGPSIFSPMPGTVSVETE---TGENEMIIPENLLIATGSRPVE  156 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEeCCCCCcCCceEEEEEeC---CCceEEEEcCEEEEeCCCCCCC
Confidence                     1112234456778999 54 44545421    0124556553   5644479999999999999964

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=97.77  E-value=0.00015  Score=76.23  Aligned_cols=98  Identities=15%  Similarity=0.111  Sum_probs=71.4

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-Cc----------CCc---cCc---------------------------
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RR----------LLK---HFD---------------------------  280 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~----------~l~---~~~---------------------------  280 (535)
                      .+|+|||||+.|+-+|..|++.|.+|+++++ +.          ..+   .+.                           
T Consensus         3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~   82 (405)
T PRK05714          3 ADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYSEM   82 (405)
T ss_pred             ccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCccceeE
Confidence            3699999999999999999999999999998 51          000   000                           


Q ss_pred             -----------------------------HHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEE
Q psy14461        281 -----------------------------QEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADV  330 (535)
Q Consensus       281 -----------------------------~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~  330 (535)
                                                   ..+.+.+.+.+++.|+++ .++++++++.+ ++.+.|++.   +|+  ++.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~-~~~v~v~~~---~g~--~~~  156 (405)
T PRK05714         83 QVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRS-GDDWLLTLA---DGR--QLR  156 (405)
T ss_pred             EEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEc-CCeEEEEEC---CCC--EEE
Confidence                                         011122334455668999 99999999876 455667763   676  799


Q ss_pred             cCEEEEccCCCCCCC
Q psy14461        331 FKTVVNAMEKKFDFA  345 (535)
Q Consensus       331 ~D~vi~a~G~~p~~~  345 (535)
                      +|+||.|.|......
T Consensus       157 a~~vVgAdG~~S~vR  171 (405)
T PRK05714        157 APLVVAADGANSAVR  171 (405)
T ss_pred             eCEEEEecCCCchhH
Confidence            999999999876543

>PRK05868 hypothetical protein; Validated

Probab=97.77  E-value=0.00029  Score=73.31  Aligned_cols=98  Identities=19%  Similarity=0.070  Sum_probs=70.7

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCc---c--Cc-------------HHH-------------------
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLK---H--FD-------------QEM-------------------  283 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~---~--~~-------------~~~-------------------  283 (535)
                      ++|+|||||+.|+.+|..|++.|.+|+++++ +.+..   .  +.             +.+                   
T Consensus         2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~~   81 (372)
T PRK05868          2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRDGNE   81 (372)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCCCCE
Confidence            4799999999999999999999999999997 53311   0  00             000                   


Q ss_pred             ----------------------HHHHHHhhh---cCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEc
Q psy14461        284 ----------------------VRILLSSLT---KAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNA  337 (535)
Q Consensus       284 ----------------------~~~~~~~l~---~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a  337 (535)
                                            ...+.+.|.   ..|+++ +++++++++.+ ++.++|+++   +|+  ++++|+||-|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i~~~-~~~v~v~~~---dg~--~~~adlvIgA  155 (372)
T PRK05868         82 LFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQPSVEYLFDDSISTLQDD-GDSVRVTFE---RAA--AREFDLVIGA  155 (372)
T ss_pred             EeecccccccCCCCCCceEEEEHHHHHHHHHHhccCCcEEEeCCEEEEEEec-CCeEEEEEC---CCC--eEEeCEEEEC
Confidence                                  011222222   357889 99999999765 566778874   677  7899999999


Q ss_pred             cCCCCCCC
Q psy14461        338 MEKKFDFA  345 (535)
Q Consensus       338 ~G~~p~~~  345 (535)
                      -|......
T Consensus       156 DG~~S~vR  163 (372)
T PRK05868        156 DGLHSNVR  163 (372)
T ss_pred             CCCCchHH
Confidence            99877654

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=97.76  E-value=0.00015  Score=77.73  Aligned_cols=98  Identities=17%  Similarity=0.111  Sum_probs=65.8

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEcCcC---------Cc--c--------------------C--------c-H
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRL---------LK--H--------------------F--------D-Q  281 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~---------l~--~--------------------~--------~-~  281 (535)
                      ++++|||+|+.|+++|..++++|.+|+++++..+         .|  .                    .        + +
T Consensus         2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~   81 (466)
T PRK07845          2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDGLGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARVDLP   81 (466)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCCCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccccCHH
Confidence            5799999999999999999999999999997221         00  0                    0        0 0


Q ss_pred             H-----------HHHHHHHhhhcCCeEE-cceEEEEEE--EeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCC
Q psy14461        282 E-----------MVRILLSSLTKAGVSI-QCCVIEKVI--SSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDF  344 (535)
Q Consensus       282 ~-----------~~~~~~~~l~~~gV~i-~~~~v~~i~--~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~  344 (535)
                      .           +.+.+.+.+++.||++ .+. +..++  .+ ...+.|..   .+|+.+++.+|.+|+|||.+|..
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~-~~~~~~~~~-~~~v~V~~---~~g~~~~~~~d~lViATGs~p~~  153 (466)
T PRK07845         82 AVNARVKALAAAQSADIRARLEREGVRVIAGR-GRLIDPGLG-PHRVKVTT---ADGGEETLDADVVLIATGASPRI  153 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE-EEEeecccC-CCEEEEEe---CCCceEEEecCEEEEcCCCCCCC
Confidence            0           0123345566779999 553 33322  21 34455554   25654579999999999999974

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=97.75  E-value=0.0017  Score=67.96  Aligned_cols=56  Identities=11%  Similarity=0.013  Sum_probs=43.9

Q ss_pred             cHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCC
Q psy14461        280 DQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKF  342 (535)
Q Consensus       280 ~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p  342 (535)
                      ...+.+.+.+.+++.|+++ .++.+.+++.. ++.+.|.+   .+|   ++.+|.|++|+|...
T Consensus       148 ~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~-~~~~~V~~---~~g---~i~ad~vV~A~G~~s  204 (393)
T PRK11728        148 YRAVAEAMAELIQARGGEIRLGAEVTALDEH-ANGVVVRT---TQG---EYEARTLINCAGLMS  204 (393)
T ss_pred             HHHHHHHHHHHHHhCCCEEEcCCEEEEEEec-CCeEEEEE---CCC---EEEeCEEEECCCcch
Confidence            4567778888888899999 99999999865 45555555   244   699999999999765

>PTZ00188 adrenodoxin reductase; Provisional

Probab=97.74  E-value=8.6e-05  Score=78.34  Aligned_cols=90  Identities=10%  Similarity=0.021  Sum_probs=60.4

Q ss_pred             CCCCcEEEECCChHHHHHHHHH-HhCCCcEEEEEc-CcCCcc-------Cc---HHHHHHHHHhhhcCCeEE-cceEEEE
Q psy14461        239 AWPGKTLVLGGSLMAVEIAATL-NFLGVPVTLVYS-RRLLKH-------FD---QEMVRILLSSLTKAGVSI-QCCVIEK  305 (535)
Q Consensus       239 ~~~k~vvViGgG~~g~e~A~~l-~~~g~~Vtlv~~-~~~l~~-------~~---~~~~~~~~~~l~~~gV~i-~~~~v~~  305 (535)
                      ..+++|+|||+|+.|+.+|..| ++.|.+|+++++ +.+...       ..   +.+...+...+...++++ .+..+-.
T Consensus        37 ~~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~gnv~VG~  116 (506)
T PTZ00188         37 AKPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFFGNVHVGV  116 (506)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhCCeEEEeeeEecC
Confidence            3578999999999999999965 467999999999 766431       11   234444555566677777 5444321


Q ss_pred             EEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCC
Q psy14461        306 VISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFD  343 (535)
Q Consensus       306 i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~  343 (535)
                               .++++    .  ....+|.||+|+|..+.
T Consensus       117 ---------Dvt~e----e--L~~~YDAVIlAtGA~~l  139 (506)
T PTZ00188        117 ---------DLKME----E--LRNHYNCVIFCCGASEV  139 (506)
T ss_pred             ---------ccCHH----H--HHhcCCEEEEEcCCCCC
Confidence                     11121    1  12378999999998754

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=97.73  E-value=0.001  Score=69.32  Aligned_cols=58  Identities=21%  Similarity=0.136  Sum_probs=43.2

Q ss_pred             HHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCC
Q psy14461        281 QEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKF  342 (535)
Q Consensus       281 ~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p  342 (535)
                      .++...+.+.+.++|+++ ++++|+.|+...++...+.+   .+|+++ ++|+.||.|.|-..
T Consensus       153 ~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~---~~g~~~-~~ak~Vin~AGl~A  211 (429)
T COG0579         153 GELTRALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNT---SNGEET-LEAKFVINAAGLYA  211 (429)
T ss_pred             HHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCceEEEEe---cCCcEE-EEeeEEEECCchhH
Confidence            345666777777889999 99999999987444333444   477744 99999999999543

>PRK09126 hypothetical protein; Provisional

Probab=97.73  E-value=0.00039  Score=72.70  Aligned_cols=98  Identities=15%  Similarity=0.130  Sum_probs=70.6

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC---c-c------CcH-----------------------------
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL---K-H------FDQ-----------------------------  281 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l---~-~------~~~-----------------------------  281 (535)
                      -+|+|||||+.|+-+|..|++.|.+|+|+++ +.+.   + .      +.+                             
T Consensus         4 ~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~   83 (392)
T PRK09126          4 SDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAKVL   83 (392)
T ss_pred             ccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEEEE
Confidence            3699999999999999999999999999998 5310   0 0      000                             


Q ss_pred             ---------------------------HHHHHHHHhh-hcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcC
Q psy14461        282 ---------------------------EMVRILLSSL-TKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFK  332 (535)
Q Consensus       282 ---------------------------~~~~~~~~~l-~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D  332 (535)
                                                 .+.+.+.+.+ +..|+++ .++++++++.. ++.+.|++.   +|+  ++.+|
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~-~~~~~v~~~---~g~--~~~a~  157 (392)
T PRK09126         84 NGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTD-DDGAQVTLA---NGR--RLTAR  157 (392)
T ss_pred             cCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEc-CCeEEEEEc---CCC--EEEeC
Confidence                                       0111122222 3468999 99999999765 455667763   676  79999


Q ss_pred             EEEEccCCCCCCC
Q psy14461        333 TVVNAMEKKFDFA  345 (535)
Q Consensus       333 ~vi~a~G~~p~~~  345 (535)
                      +||.|.|..+...
T Consensus       158 ~vI~AdG~~S~vr  170 (392)
T PRK09126        158 LLVAADSRFSATR  170 (392)
T ss_pred             EEEEeCCCCchhh
Confidence            9999999987654

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.72  E-value=0.00019  Score=77.01  Aligned_cols=95  Identities=17%  Similarity=0.047  Sum_probs=63.3

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc------Cc-------------------------------HHH
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH------FD-------------------------------QEM  283 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~------~~-------------------------------~~~  283 (535)
                      -.|+|||+|+.|+.+|..++++|.+|+++++ +.+...      .+                               +.+
T Consensus         5 ~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~   84 (471)
T PRK06467          5 TQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKIDIDKM   84 (471)
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCCCcCHHHH
Confidence            4699999999999999999999999999998 544210      00                               011


Q ss_pred             H-----------HHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCC
Q psy14461        284 V-----------RILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFD  343 (535)
Q Consensus       284 ~-----------~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~  343 (535)
                      .           +.+...+++.||++ .+. ..-++   ...+.|..   .+|+..++.+|.+|+|||.+|.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~-a~~~~---~~~v~v~~---~~g~~~~~~~d~lViATGs~p~  149 (471)
T PRK06467         85 RARKEKVVKQLTGGLAGMAKGRKVTVVNGL-GKFTG---GNTLEVTG---EDGKTTVIEFDNAIIAAGSRPI  149 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEcc---CCEEEEec---CCCceEEEEcCEEEEeCCCCCC
Confidence            1           11123355678888 553 22222   23344443   2564457999999999999986

>PRK12831 putative oxidoreductase; Provisional

Probab=97.71  E-value=7.5e-05  Score=79.92  Aligned_cols=93  Identities=20%  Similarity=0.170  Sum_probs=66.2

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC-------cc--CcH-HHHHHHHHhhhcCCeEE-cceEEEEE
Q psy14461        239 AWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL-------KH--FDQ-EMVRILLSSLTKAGVSI-QCCVIEKV  306 (535)
Q Consensus       239 ~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l-------~~--~~~-~~~~~~~~~l~~~gV~i-~~~~v~~i  306 (535)
                      ..+++|+|||+|+.|+.+|..|+++|.+|+++++ +.+.       |.  ++. ++.....+.+++.||++ .++.+.. 
T Consensus       138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~~gv~i~~~~~v~~-  216 (464)
T PRK12831        138 KKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYGIPEFRLPKETVVKKEIENIKKLGVKIETNVVVGK-  216 (464)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeeecCCCccCCccHHHHHHHHHHHHcCCEEEcCCEECC-
Confidence            3468999999999999999999999999999998 5431       11  222 35556667788889999 8875521 


Q ss_pred             EEeCCCcEEEEEecCCCCCceEEEcCEEEEccCC-CCCC
Q psy14461        307 ISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEK-KFDF  344 (535)
Q Consensus       307 ~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~-~p~~  344 (535)
                              .+.+.   +.. ..+.+|.||+|+|. .|..
T Consensus       217 --------~v~~~---~~~-~~~~~d~viiAtGa~~~~~  243 (464)
T PRK12831        217 --------TVTID---ELL-EEEGFDAVFIGSGAGLPKF  243 (464)
T ss_pred             --------cCCHH---HHH-hccCCCEEEEeCCCCCCCC
Confidence                    12221   221 14569999999997 5654

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=97.71  E-value=0.0001  Score=79.27  Aligned_cols=89  Identities=21%  Similarity=0.205  Sum_probs=67.2

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC-------c--cCcHHHHHHHHHhhhcCCeEE-cceEEEEEEE
Q psy14461        240 WPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL-------K--HFDQEMVRILLSSLTKAGVSI-QCCVIEKVIS  308 (535)
Q Consensus       240 ~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l-------~--~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~  308 (535)
                      .+++|+|||+|++|+++|..|++.|.+|+++++ +.+.       |  .+++++.....+.+++.||++ .++.+.. + 
T Consensus       142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~-~-  219 (485)
T TIGR01317       142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVTNTEIGV-D-  219 (485)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEECCCEeCC-c-
Confidence            347999999999999999999999999999998 6542       2  235566666667788899999 8887631 0 


Q ss_pred             eCCCcEEEEEecCCCCCceEEEcCEEEEccCCC-CC
Q psy14461        309 SFDGMKGVRGFHPESKEPFADVFKTVVNAMEKK-FD  343 (535)
Q Consensus       309 ~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~-p~  343 (535)
                             +..    ++  ....+|.|++|+|.. |.
T Consensus       220 -------~~~----~~--~~~~~d~VilAtGa~~~~  242 (485)
T TIGR01317       220 -------ISA----DE--LKEQFDAVVLAGGATKPR  242 (485)
T ss_pred             -------cCH----HH--HHhhCCEEEEccCCCCCC
Confidence                   111    11  135799999999997 44

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=97.71  E-value=0.00047  Score=72.24  Aligned_cols=102  Identities=12%  Similarity=-0.010  Sum_probs=73.6

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcC--Ccc------------------C---------------------
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRL--LKH------------------F---------------------  279 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~--l~~------------------~---------------------  279 (535)
                      .+|+|||+|+.|+-+|..|++.|.+|+++++ +..  ...                  +                     
T Consensus         3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~g~   82 (392)
T PRK08243          3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFDGR   82 (392)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEECCE
Confidence            5799999999999999999999999999998 531  000                  0                     


Q ss_pred             -------------------cHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccC
Q psy14461        280 -------------------DQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAME  339 (535)
Q Consensus       280 -------------------~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G  339 (535)
                                         ..++.+.+.+...+.|+++ +++++++++..+++...|++.  .+|++.++.+|+||-|-|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~~V~~~--~~G~~~~i~ad~vVgADG  160 (392)
T PRK08243         83 RHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFDSDRPYVTYE--KDGEEHRLDCDFIAGCDG  160 (392)
T ss_pred             EEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCceEEEEE--cCCeEEEEEeCEEEECCC
Confidence                               0111223333345678999 999999987622445667764  267666899999999999


Q ss_pred             CCCCCC
Q psy14461        340 KKFDFA  345 (535)
Q Consensus       340 ~~p~~~  345 (535)
                      ......
T Consensus       161 ~~S~vR  166 (392)
T PRK08243        161 FHGVSR  166 (392)
T ss_pred             CCCchh
Confidence            887654

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.70  E-value=0.00037  Score=74.22  Aligned_cols=96  Identities=13%  Similarity=0.121  Sum_probs=62.7

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC-cc------CcH-----------HH----------HHHH----HH
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL-KH------FDQ-----------EM----------VRIL----LS  289 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l-~~------~~~-----------~~----------~~~~----~~  289 (535)
                      .|+|||||+.|+.+|..|+++|.+|+++++ +..+ ..      .+.           ++          .+.+    .+
T Consensus         5 DvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (441)
T PRK08010          5 QAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQHTDFVRAIQRKNEVVNFLRNKNFH   84 (441)
T ss_pred             CEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeeccccchHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHHH
Confidence            699999999999999999999999999998 5321 10      000           01          0111    11


Q ss_pred             hhh-cCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCC
Q psy14461        290 SLT-KAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAA  346 (535)
Q Consensus       290 ~l~-~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~  346 (535)
                      .+. ..||++ .+ ++..++   .+.+.|...   +|+ .++.+|.+++|||.+|....
T Consensus        85 ~~~~~~gv~~~~g-~~~~i~---~~~~~v~~~---~g~-~~~~~d~lviATGs~p~~p~  135 (441)
T PRK08010         85 NLADMPNIDVIDG-QAEFIN---NHSLRVHRP---EGN-LEIHGEKIFINTGAQTVVPP  135 (441)
T ss_pred             HHhhcCCcEEEEE-EEEEec---CCEEEEEeC---CCe-EEEEeCEEEEcCCCcCCCCC
Confidence            222 338888 54 455443   344555542   443 36899999999999986543

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=97.69  E-value=0.0004  Score=72.33  Aligned_cols=95  Identities=17%  Similarity=0.250  Sum_probs=69.5

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-CcEEEEEc-CcCCcc---------Cc-------------------------------
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLG-VPVTLVYS-RRLLKH---------FD-------------------------------  280 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g-~~Vtlv~~-~~~l~~---------~~-------------------------------  280 (535)
                      .|+|||||+.|+-+|..|++.| .+|+++++ +.+.+.         +.                               
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~   80 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ   80 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence            4899999999999999999999 99999998 432110         00                               


Q ss_pred             ------------------------HHHHHHHHHhhhc-CCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEE
Q psy14461        281 ------------------------QEMVRILLSSLTK-AGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTV  334 (535)
Q Consensus       281 ------------------------~~~~~~~~~~l~~-~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~v  334 (535)
                                              .++.+.+.+.+.+ .|+++ .++++++++.+ ++.+.|++.   +|+  ++.+|+|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~-~~~~~v~~~---~g~--~~~ad~v  154 (382)
T TIGR01984        81 GHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRN-QDYVRVTLD---NGQ--QLRAKLL  154 (382)
T ss_pred             CCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEc-CCeEEEEEC---CCC--EEEeeEE
Confidence                                    0112233344444 48999 89999999866 455667663   666  7999999


Q ss_pred             EEccCCCCC
Q psy14461        335 VNAMEKKFD  343 (535)
Q Consensus       335 i~a~G~~p~  343 (535)
                      |.|.|....
T Consensus       155 V~AdG~~S~  163 (382)
T TIGR01984       155 IAADGANSK  163 (382)
T ss_pred             EEecCCChH
Confidence            999997653

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=97.69  E-value=0.00051  Score=75.26  Aligned_cols=101  Identities=14%  Similarity=0.116  Sum_probs=71.7

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc-----Cc----------------------------------
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH-----FD----------------------------------  280 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~-----~~----------------------------------  280 (535)
                      ..+|+|||+|++|+-+|..|++.|.+|+++++ +.+...     +.                                  
T Consensus        23 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~  102 (547)
T PRK08132         23 RHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFLRDEE  102 (547)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEeCCCe
Confidence            35799999999999999999999999999998 532110     00                                  


Q ss_pred             ----------------------HHHHHHHHHhhhc-CCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEE
Q psy14461        281 ----------------------QEMVRILLSSLTK-AGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVN  336 (535)
Q Consensus       281 ----------------------~~~~~~~~~~l~~-~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~  336 (535)
                                            ..+.+.+.+.+.+ .++++ .++++++++.+ ++.+.++++. .+|+ .++.+|.||.
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~-~~~v~v~~~~-~~g~-~~i~ad~vVg  179 (547)
T PRK08132        103 VYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQH-DDGVTLTVET-PDGP-YTLEADWVIA  179 (547)
T ss_pred             EEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEc-CCEEEEEEEC-CCCc-EEEEeCEEEE
Confidence                                  0111223333444 37999 99999999876 4556666653 2342 3689999999


Q ss_pred             ccCCCCCC
Q psy14461        337 AMEKKFDF  344 (535)
Q Consensus       337 a~G~~p~~  344 (535)
                      |.|.....
T Consensus       180 ADG~~S~v  187 (547)
T PRK08132        180 CDGARSPL  187 (547)
T ss_pred             CCCCCcHH
Confidence            99988765

>PRK06126 hypothetical protein; Provisional

Probab=97.69  E-value=0.00048  Score=75.46  Aligned_cols=101  Identities=16%  Similarity=0.122  Sum_probs=71.9

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc----------------C--cH--------------------
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH----------------F--DQ--------------------  281 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~----------------~--~~--------------------  281 (535)
                      ..+|+|||||++|+-+|..|+++|.+|+|+++ +.+.+.                +  .+                    
T Consensus         7 ~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~~~~~   86 (545)
T PRK06126          7 ETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIAYFTR   86 (545)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCceEEec
Confidence            45799999999999999999999999999987 421100                0  00                    


Q ss_pred             ----------------------------------------HHHHHHHHhhhc-CCeEE-cceEEEEEEEeCCCcEEEEEe
Q psy14461        282 ----------------------------------------EMVRILLSSLTK-AGVSI-QCCVIEKVISSFDGMKGVRGF  319 (535)
Q Consensus       282 ----------------------------------------~~~~~~~~~l~~-~gV~i-~~~~v~~i~~~~~~~~~v~~~  319 (535)
                                                              .+...+.+.+++ .++++ +++++++++.+ ++.+.+++.
T Consensus        87 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~-~~~v~v~~~  165 (545)
T PRK06126         87 LTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQD-ADGVTATVE  165 (545)
T ss_pred             CCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEEC-CCeEEEEEE
Confidence                                                    011122233333 48999 99999999876 455667665


Q ss_pred             cCCCCCceEEEcCEEEEccCCCC
Q psy14461        320 HPESKEPFADVFKTVVNAMEKKF  342 (535)
Q Consensus       320 ~~~~G~~~~~~~D~vi~a~G~~p  342 (535)
                      +..+|+..++.+|+||.|.|...
T Consensus       166 ~~~~g~~~~i~ad~vVgADG~~S  188 (545)
T PRK06126        166 DLDGGESLTIRADYLVGCDGARS  188 (545)
T ss_pred             ECCCCcEEEEEEEEEEecCCcch
Confidence            43467666899999999999653

>PRK14694 putative mercuric reductase; Provisional

Probab=97.69  E-value=0.00049  Score=73.86  Aligned_cols=100  Identities=15%  Similarity=0.029  Sum_probs=66.2

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEcCcC---------------------------Cc----------cCc-HHH
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRL---------------------------LK----------HFD-QEM  283 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~---------------------------l~----------~~~-~~~  283 (535)
                      -.|+|||+|+.|+.+|..|++.|.+|.++++..+                           .+          ..+ .++
T Consensus         7 ~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~~~~~~~l   86 (468)
T PRK14694          7 LHIAVIGSGGSAMAAALKATERGARVTLIERGTIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAPVVDRSAL   86 (468)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEEccccccceecCCccccHHHHHHHHHHHHHhhccccCCcccCCCccCHHHH
Confidence            4799999999999999999999999999997221                           00          000 011


Q ss_pred             HHH------------HHHhhhc-CCeEEcceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCC
Q psy14461        284 VRI------------LLSSLTK-AGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAAL  347 (535)
Q Consensus       284 ~~~------------~~~~l~~-~gV~i~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l  347 (535)
                      .+.            ....+++ .+|++...++..++   .+.+.|++.   +|+..++++|.+|+|||.+|....+
T Consensus        87 ~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id---~~~~~V~~~---~g~~~~~~~d~lViATGs~p~~p~i  157 (468)
T PRK14694         87 LAQQQARVEELRESKYQSILRENAAITVLNGEARFVD---ERTLTVTLN---DGGEQTVHFDRAFIGTGARPAEPPV  157 (468)
T ss_pred             HHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEec---CCEEEEEec---CCCeEEEECCEEEEeCCCCCCCCCC
Confidence            111            1112333 37888333566664   344667763   5644579999999999999876543

>PRK06116 glutathione reductase; Validated

Probab=97.69  E-value=0.00023  Score=75.97  Aligned_cols=93  Identities=19%  Similarity=0.245  Sum_probs=63.6

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEcCcCCc-------------------------------------cCc-H---
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLK-------------------------------------HFD-Q---  281 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~l~-------------------------------------~~~-~---  281 (535)
                      .|+|||||+.|+.+|..++++|.+|+++++..+..                                     .++ +   
T Consensus         6 DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~   85 (450)
T PRK06116          6 DLIVIGGGSGGIASANRAAMYGAKVALIEAKRLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENKFDWAKLI   85 (450)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccchhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCCcCHHHHH
Confidence            69999999999999999999999999999732200                                     000 0   


Q ss_pred             --------HHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCC
Q psy14461        282 --------EMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAAL  347 (535)
Q Consensus       282 --------~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l  347 (535)
                              .+.+.+.+.+++.||++ .+. ++.++.     .+|++    +|+  ++.+|.+++|||.+|+...+
T Consensus        86 ~~~~~~~~~~~~~~~~~l~~~gv~~~~g~-~~~v~~-----~~v~~----~g~--~~~~d~lViATGs~p~~p~i  148 (450)
T PRK06116         86 ANRDAYIDRLHGSYRNGLENNGVDLIEGF-ARFVDA-----HTVEV----NGE--RYTADHILIATGGRPSIPDI  148 (450)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEccC-----CEEEE----CCE--EEEeCEEEEecCCCCCCCCC
Confidence                    01112234456678998 653 444431     24555    455  79999999999999976543

>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins

Probab=97.69  E-value=0.00013  Score=59.48  Aligned_cols=65  Identities=22%  Similarity=0.247  Sum_probs=47.4

Q ss_pred             HhhhcCCcEEEEeC-----CCchhhHHHHHHHHHhcCCcceEEEEEeeCCccHHHHHHHHHhhCCCeE-EEEecCC
Q psy14461         52 SRLSYENRILIFTH-----AVLREENARAERYLNARGDRFAVLYLDRIGDEGILLEEELKRQTNQRRD-ELQERGS  121 (535)
Q Consensus        52 ~~~i~~~~v~v~~k-----~~cp~~~~~~k~~~~~~~~~~~~~~v~iiG~G~aG~~~al~~~~~~~~V-~lie~~~  121 (535)
                      .+++++++|++|+|     ++|| +|.++++++.+.+.++..+++.  .. + .+..++.+.++..+| .||-.+.
T Consensus         2 ~~~i~~~~vvvf~k~~~~~~~Cp-~C~~ak~~L~~~~i~y~~idv~--~~-~-~~~~~l~~~~g~~tvP~vfi~g~   72 (90)
T cd03028           2 KKLIKENPVVLFMKGTPEEPRCG-FSRKVVQILNQLGVDFGTFDIL--ED-E-EVRQGLKEYSNWPTFPQLYVNGE   72 (90)
T ss_pred             hhhhccCCEEEEEcCCCCCCCCc-HHHHHHHHHHHcCCCeEEEEcC--CC-H-HHHHHHHHHhCCCCCCEEEECCE
Confidence            46789999999998     4999 9999999999999887666543  33 3 377778777665443 3333343

The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=97.68  E-value=0.00023  Score=73.21  Aligned_cols=76  Identities=21%  Similarity=0.249  Sum_probs=53.6

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc----------CcHH---HHHHHHHhhhcCCeEE-cceEEE
Q psy14461        240 WPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH----------FDQE---MVRILLSSLTKAGVSI-QCCVIE  304 (535)
Q Consensus       240 ~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~----------~~~~---~~~~~~~~l~~~gV~i-~~~~v~  304 (535)
                      ..++++|||||..|+++|..|+..|.+|+++++ +.+...          .|-.   +.-.+.+.-...+|++ +.++|+
T Consensus       123 v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~m~~v~~hp~i~l~TyaeV~  202 (622)
T COG1148         123 VSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPKMVEVSNHPNIELITYAEVE  202 (622)
T ss_pred             hccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhhccCCCcccchhhccchhhhhccCCceeeeeeeeee
Confidence            468999999999999999999999999999998 665332          1111   1112223334568999 999999


Q ss_pred             EEEEeCCCcEEE
Q psy14461        305 KVISSFDGMKGV  316 (535)
Q Consensus       305 ~i~~~~~~~~~v  316 (535)
                      ++.+. -|.++|
T Consensus       203 ev~G~-vGnF~v  213 (622)
T COG1148         203 EVSGS-VGNFTV  213 (622)
T ss_pred             eeccc-ccceEE
Confidence            87764 344443

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=97.68  E-value=0.0052  Score=64.72  Aligned_cols=57  Identities=16%  Similarity=0.063  Sum_probs=41.6

Q ss_pred             HHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCC--ceEEEcCEEEEccCCC
Q psy14461        282 EMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKE--PFADVFKTVVNAMEKK  341 (535)
Q Consensus       282 ~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~--~~~~~~D~vi~a~G~~  341 (535)
                      .+...+.+.+++.|+++ .+++|++++.. ++.+.+.+..  ++.  ..++.+|.||+|+|..
T Consensus       198 ~~~~~l~~~a~~~G~~i~~~~~V~~i~~~-~~~~~v~~~~--~~~~~~~~i~a~~vV~a~G~~  257 (410)
T PRK12409        198 KFTTGLAAACARLGVQFRYGQEVTSIKTD-GGGVVLTVQP--SAEHPSRTLEFDGVVVCAGVG  257 (410)
T ss_pred             HHHHHHHHHHHhCCCEEEcCCEEEEEEEe-CCEEEEEEEc--CCCCccceEecCEEEECCCcC
Confidence            55566677788899999 99999999865 4555555532  211  2268999999999965

>PLN02852 ferredoxin-NADP+ reductase

Probab=97.67  E-value=0.00012  Score=78.28  Aligned_cols=89  Identities=18%  Similarity=0.109  Sum_probs=63.6

Q ss_pred             CCCcEEEECCChHHHHHHHHHHh--CCCcEEEEEc-CcCCcc----------CcHHHHHHHHHhhhcCCeEE-cceEEEE
Q psy14461        240 WPGKTLVLGGSLMAVEIAATLNF--LGVPVTLVYS-RRLLKH----------FDQEMVRILLSSLTKAGVSI-QCCVIEK  305 (535)
Q Consensus       240 ~~k~vvViGgG~~g~e~A~~l~~--~g~~Vtlv~~-~~~l~~----------~~~~~~~~~~~~l~~~gV~i-~~~~v~~  305 (535)
                      .+++|+|||+|+.|+.+|..|++  .|.+|+|+++ +.+...          ....+...+.+.++..+|++ .+..+-.
T Consensus        25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~nv~vg~  104 (491)
T PLN02852         25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVATDDRVSFFGNVTLGR  104 (491)
T ss_pred             CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHHHCCeEEEcCEEECc
Confidence            46899999999999999999987  6999999999 765421          11233445556677788999 7765521


Q ss_pred             EEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCC
Q psy14461        306 VISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFD  343 (535)
Q Consensus       306 i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~  343 (535)
                               .+++.   +-   ...+|.||+|+|..+.
T Consensus       105 ---------dvtl~---~L---~~~yDaVIlAtGa~~~  127 (491)
T PLN02852        105 ---------DVSLS---EL---RDLYHVVVLAYGAESD  127 (491)
T ss_pred             ---------cccHH---HH---hhhCCEEEEecCCCCC
Confidence                     13332   22   2469999999998763

>PRK06753 hypothetical protein; Provisional

Probab=97.67  E-value=0.00041  Score=72.02  Aligned_cols=97  Identities=13%  Similarity=0.141  Sum_probs=68.0

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc-----CcH-------------HH--------------------
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH-----FDQ-------------EM--------------------  283 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~-----~~~-------------~~--------------------  283 (535)
                      +|+|||||+.|+-+|..|++.|.+|+|+++ +.+...     +.+             .+                    
T Consensus         2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~~~   81 (373)
T PRK06753          2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGTLL   81 (373)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCCEE
Confidence            699999999999999999999999999998 543110     000             00                    


Q ss_pred             ---------------HHHHHHhhhc--CCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCC
Q psy14461        284 ---------------VRILLSSLTK--AGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFA  345 (535)
Q Consensus       284 ---------------~~~~~~~l~~--~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~  345 (535)
                                     ...+.+.|.+  .+.++ +++++++++.+ ++.+.|+++   +|+  ++.+|+||.|-|....+.
T Consensus        82 ~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~-~~~v~v~~~---~g~--~~~~~~vigadG~~S~vR  155 (373)
T PRK06753         82 NKVKLKSNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENE-TDKVTIHFA---DGE--SEAFDLCIGADGIHSKVR  155 (373)
T ss_pred             eecccccCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEec-CCcEEEEEC---CCC--EEecCEEEECCCcchHHH
Confidence                           0111222211  23568 89999999865 566777763   676  789999999999776553

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=97.67  E-value=0.0025  Score=62.82  Aligned_cols=119  Identities=14%  Similarity=0.145  Sum_probs=73.3

Q ss_pred             HHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEE-EEEecCCCCCceEEEcCEEEEccCCCCCCCC-----------CC
Q psy14461        282 EMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKG-VRGFHPESKEPFADVFKTVVNAMEKKFDFAA-----------LN  348 (535)
Q Consensus       282 ~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~-v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~-----------l~  348 (535)
                      .+.+.+...+++.|.-+ ++..|.+.+-. +++++ |..   .+.....+.+|..++|+|.--...+           +.
T Consensus       259 Rl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~-~~~v~~i~t---rn~~diP~~a~~~VLAsGsffskGLvae~d~I~EPIf~  334 (421)
T COG3075         259 RLHNQLQRQFEQLGGLWMPGDEVKKATCK-GGRVTEIYT---RNHADIPLRADFYVLASGSFFSKGLVAERDKIYEPIFD  334 (421)
T ss_pred             hHHHHHHHHHHHcCceEecCCceeeeeee-CCeEEEEEe---cccccCCCChhHeeeeccccccccchhhhhhhhcchhh
Confidence            34566777888888888 99999988776 46554 433   3666667889999999994321111           11


Q ss_pred             ccccCe----eec------CC----CceEcCCCCCcC-----CCCEEEeCCcCCCCCCcHH------HHHHHHHHHHHHH
Q psy14461        349 LHHIGV----DIK------KK----SYVVCNEKDQTS-----VGNIFAVGGIVHGKPNNAS------MAAISARLIIERL  403 (535)
Q Consensus       349 l~~~gl----~~~------~~----G~i~vd~~~~T~-----~~~IyA~GD~~~~~~~~~~------~A~~~g~~aa~~i  403 (535)
                      ++-...    ++.      +.    =.+.+|+++|.+     ..|+||+|-+. ++...+.      +|+..|-.||+.|
T Consensus       335 ldi~~~~dR~~W~~~~ffapqp~~qfGV~tD~~lrp~~~g~~~eNL~aiGavl-gGfdpi~egcGsGVaivta~~aa~qi  413 (421)
T COG3075         335 LDILQTADRAEWYHSDFFAPQPYQQFGVTTDDTLRPSRGGQTIENLYAIGAVL-GGFDPIAEGCGSGVAIVTALHAAEQI  413 (421)
T ss_pred             cccccCcchhhhhhccccCCChhHHhCcccccccCccccchHHHHHHHHHHHh-cCCcHHHhcCCcchHHHHHHHHHHHH
Confidence            110000    000      00    025667777643     46899999998 6644332      4677777777777


Q ss_pred             hC
Q psy14461        404 YG  405 (535)
Q Consensus       404 ~g  405 (535)
                      +.
T Consensus       414 ~~  415 (421)
T COG3075         414 AE  415 (421)
T ss_pred             HH
Confidence            64

>PRK07190 hypothetical protein; Provisional

Probab=97.65  E-value=0.0005  Score=74.05  Aligned_cols=94  Identities=13%  Similarity=0.117  Sum_probs=69.2

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc-----C------------------------------------
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH-----F------------------------------------  279 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~-----~------------------------------------  279 (535)
                      -.|+|||+|++|+-+|..|++.|.+|+++++ +.+...     +                                    
T Consensus         6 ~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~g~~i   85 (487)
T PRK07190          6 TDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWANGKFI   85 (487)
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEecCCceE
Confidence            4699999999999999999999999999988 532100     0                                    


Q ss_pred             ----------c------------HHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEE
Q psy14461        280 ----------D------------QEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVN  336 (535)
Q Consensus       280 ----------~------------~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~  336 (535)
                                +            ..+...+.+.+++.|+++ .++++++++.+ ++.+.+.+.   +|+  ++.++.||.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~-~~~v~v~~~---~g~--~v~a~~vVg  159 (487)
T PRK07190         86 SRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELN-QAGCLTTLS---NGE--RIQSRYVIG  159 (487)
T ss_pred             eeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEc-CCeeEEEEC---CCc--EEEeCEEEE
Confidence                      0            011122334456679999 99999999876 455666553   565  799999999


Q ss_pred             ccCCC
Q psy14461        337 AMEKK  341 (535)
Q Consensus       337 a~G~~  341 (535)
                      |.|.+
T Consensus       160 ADG~~  164 (487)
T PRK07190        160 ADGSR  164 (487)
T ss_pred             CCCCC
Confidence            99964

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=97.64  E-value=0.00037  Score=73.13  Aligned_cols=41  Identities=10%  Similarity=-0.069  Sum_probs=36.5

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccccc
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKK  128 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~  128 (535)
                      .+||+|||+||||.++|..+...+.+|+|+||.+.+++..+
T Consensus         3 ~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~   43 (396)
T COG0644           3 EYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPC   43 (396)
T ss_pred             eeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCcc
Confidence            47899999999999999999888899999999987766554

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=97.64  E-value=0.00055  Score=71.23  Aligned_cols=96  Identities=11%  Similarity=0.141  Sum_probs=69.6

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC--------c--cCc-------------------------------
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL--------K--HFD-------------------------------  280 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l--------~--~~~-------------------------------  280 (535)
                      .|+|||+|+.|+-+|..|++.|.+|+|+++ +.+-        .  .+.                               
T Consensus         1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~   80 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD   80 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence            489999999999999999999999999998 5320        0  000                               


Q ss_pred             -------------------------HHHHHHHHHhhhcCC-eEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCE
Q psy14461        281 -------------------------QEMVRILLSSLTKAG-VSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKT  333 (535)
Q Consensus       281 -------------------------~~~~~~~~~~l~~~g-V~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~  333 (535)
                                               .++.+.+.+.+.+.| +++ .++++++++.. ++.+.++++   +|+  ++.+|+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~-~~~~~v~~~---~g~--~~~~~~  154 (385)
T TIGR01988        81 GGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRH-SDHVELTLD---DGQ--QLRARL  154 (385)
T ss_pred             CCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEec-CCeeEEEEC---CCC--EEEeeE
Confidence                                     011222333445556 889 99999999765 455667663   676  799999


Q ss_pred             EEEccCCCCCC
Q psy14461        334 VVNAMEKKFDF  344 (535)
Q Consensus       334 vi~a~G~~p~~  344 (535)
                      ||.|.|.....
T Consensus       155 vi~adG~~S~v  165 (385)
T TIGR01988       155 LVGADGANSKV  165 (385)
T ss_pred             EEEeCCCCCHH
Confidence            99999986543

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=97.63  E-value=0.00065  Score=72.02  Aligned_cols=95  Identities=17%  Similarity=0.150  Sum_probs=68.0

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc------------------C----c------------------
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH------------------F----D------------------  280 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~------------------~----~------------------  280 (535)
                      -.|+|||||+.|+-+|..|++.|.+|.++++ +.+...                  +    +                  
T Consensus         6 ~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (428)
T PRK10157          6 FDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEKSA   85 (428)
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEEEcCCCc
Confidence            4799999999999999999999999999998 432100                  0    0                  


Q ss_pred             ----------------------HHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEc
Q psy14461        281 ----------------------QEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNA  337 (535)
Q Consensus       281 ----------------------~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a  337 (535)
                                            .++.+.+.+..++.|+++ .+++++++..+ ++.+....   .+|.  ++.+|.||.|
T Consensus        86 ~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~-~g~v~~v~---~~g~--~i~A~~VI~A  159 (428)
T PRK10157         86 MTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQR-DGKVVGVE---ADGD--VIEAKTVILA  159 (428)
T ss_pred             eeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEe-CCEEEEEE---cCCc--EEECCEEEEE
Confidence                                  011123444556689999 99999998765 45443322   2555  7899999999


Q ss_pred             cCCCC
Q psy14461        338 MEKKF  342 (535)
Q Consensus       338 ~G~~p  342 (535)
                      .|...
T Consensus       160 ~G~~s  164 (428)
T PRK10157        160 DGVNS  164 (428)
T ss_pred             eCCCH
Confidence            99743

>PRK08013 oxidoreductase; Provisional

Probab=97.62  E-value=0.00062  Score=71.51  Aligned_cols=98  Identities=11%  Similarity=0.073  Sum_probs=70.3

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc-----------CcH----------------------------
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH-----------FDQ----------------------------  281 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~-----------~~~----------------------------  281 (535)
                      .+|+|||||+.|+-+|..|++.|.+|+++++ +.+.+.           +.+                            
T Consensus         4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~~~   83 (400)
T PRK08013          4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGMEV   83 (400)
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEEEE
Confidence            4799999999999999999999999999998 532100           000                            


Q ss_pred             ----------------------------HHHHHHHHhhhc-CCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEc
Q psy14461        282 ----------------------------EMVRILLSSLTK-AGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVF  331 (535)
Q Consensus       282 ----------------------------~~~~~~~~~l~~-~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~  331 (535)
                                                  ++.+.+.+.+.+ .||++ .++++++++.+ ++.+.+++.   +|+  ++.+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~-~~~v~v~~~---~g~--~i~a  157 (400)
T PRK08013         84 WDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWG-ENEAFLTLK---DGS--MLTA  157 (400)
T ss_pred             EeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEec-CCeEEEEEc---CCC--EEEe
Confidence                                        011122223333 37899 99999998765 455677773   676  7999


Q ss_pred             CEEEEccCCCCCCC
Q psy14461        332 KTVVNAMEKKFDFA  345 (535)
Q Consensus       332 D~vi~a~G~~p~~~  345 (535)
                      |+||-|-|......
T Consensus       158 ~lvVgADG~~S~vR  171 (400)
T PRK08013        158 RLVVGADGANSWLR  171 (400)
T ss_pred             eEEEEeCCCCcHHH
Confidence            99999999876553

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=97.62  E-value=0.00047  Score=68.69  Aligned_cols=36  Identities=14%  Similarity=0.040  Sum_probs=32.1

Q ss_pred             EEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccc
Q psy14461         90 YLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSF  125 (535)
Q Consensus        90 ~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~  125 (535)
                      +|+|||+|++|+.+|+.+...+.+|+|+|+.+....
T Consensus         2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~   37 (295)
T TIGR02032         2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRY   37 (295)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCc
Confidence            689999999999999998888999999999976543

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.61  E-value=0.00044  Score=74.17  Aligned_cols=30  Identities=23%  Similarity=0.323  Sum_probs=29.0

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      .|+|||+|+.|+.+|..++++|.+|+++++
T Consensus         5 DvvVIG~GpaG~~AA~~aa~~G~~V~liE~   34 (466)
T PRK06115          5 DVVIIGGGPGGYNAAIRAGQLGLKVACVEG   34 (466)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence            699999999999999999999999999996

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=97.60  E-value=0.00016  Score=70.99  Aligned_cols=48  Identities=15%  Similarity=0.111  Sum_probs=37.4

Q ss_pred             HHHHHhcCCcceEEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccc
Q psy14461         76 ERYLNARGDRFAVLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLS  124 (535)
Q Consensus        76 k~~~~~~~~~~~~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~  124 (535)
                      +++++.+.. +...||+|||+|++|+.+|+.+...+.+|+|+|+...++
T Consensus        14 ~~~~~~~~~-~~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~G   61 (257)
T PRK04176         14 EEYFEKLLD-YLEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFG   61 (257)
T ss_pred             HHHHHHHHH-hccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCC
Confidence            334444432 224688999999999999999988999999999987654

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.60  E-value=0.00064  Score=70.73  Aligned_cols=96  Identities=18%  Similarity=0.177  Sum_probs=69.2

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc---------Cc--------------------------------
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH---------FD--------------------------------  280 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~---------~~--------------------------------  280 (535)
                      +|+|||||+.|+-+|..|++.|.+|+|+++ +...+.         +.                                
T Consensus         3 dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~   82 (374)
T PRK06617          3 NTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVVDNK   82 (374)
T ss_pred             cEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEEECC
Confidence            599999999999999999999999999996 311000         00                                


Q ss_pred             ---------------------HHHHHHHHHhhhcC-CeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEc
Q psy14461        281 ---------------------QEMVRILLSSLTKA-GVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNA  337 (535)
Q Consensus       281 ---------------------~~~~~~~~~~l~~~-gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a  337 (535)
                                           .++.+.+.+.+.+. ++++ .+++++++..+ ++.+.|.+.   ++   ++.+|+||.|
T Consensus        83 g~~~~~~~~~~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~-~~~v~v~~~---~~---~~~adlvIgA  155 (374)
T PRK06617         83 ASEILDLRNDADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISH-NDYSIIKFD---DK---QIKCNLLIIC  155 (374)
T ss_pred             CceEEEecCCCCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEc-CCeEEEEEc---CC---EEeeCEEEEe
Confidence                                 12233344444444 4888 89999998766 455677762   33   6999999999


Q ss_pred             cCCCCCCC
Q psy14461        338 MEKKFDFA  345 (535)
Q Consensus       338 ~G~~p~~~  345 (535)
                      -|......
T Consensus       156 DG~~S~vR  163 (374)
T PRK06617        156 DGANSKVR  163 (374)
T ss_pred             CCCCchhH
Confidence            99887654

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=97.60  E-value=0.00013  Score=82.95  Aligned_cols=90  Identities=20%  Similarity=0.239  Sum_probs=66.7

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC-------c--cCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEe
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL-------K--HFDQEMVRILLSSLTKAGVSI-QCCVIEKVISS  309 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l-------~--~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~  309 (535)
                      +++|+|||||+.|+.+|..|++.|.+|+++++ +.+.       |  .++.++.+...+.+++.||++ .++.+.     
T Consensus       431 ~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~rlp~~~~~~~~~~l~~~gv~~~~~~~v~-----  505 (752)
T PRK12778        431 GKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKKLGVKFETDVIVG-----  505 (752)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCCCCCHHHHHHHHHHHHHCCCEEECCCEEC-----
Confidence            57899999999999999999999999999998 5432       1  234566666667788889999 887541     


Q ss_pred             CCCcEEEEEecCCCCCceEEEcCEEEEccCC-CCCC
Q psy14461        310 FDGMKGVRGFHPESKEPFADVFKTVVNAMEK-KFDF  344 (535)
Q Consensus       310 ~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~-~p~~  344 (535)
                        .  .++++   +..  ...+|.||+|+|. .|..
T Consensus       506 --~--~v~~~---~l~--~~~ydavvlAtGa~~~~~  532 (752)
T PRK12778        506 --K--TITIE---ELE--EEGFKGIFIASGAGLPNF  532 (752)
T ss_pred             --C--cCCHH---HHh--hcCCCEEEEeCCCCCCCC
Confidence              1  13332   222  4569999999998 4654

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=97.59  E-value=0.00015  Score=77.79  Aligned_cols=87  Identities=15%  Similarity=0.167  Sum_probs=65.0

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCc---------cCcHHHHHHHHHhhhcCCeEE-cceEEEEEEE
Q psy14461        240 WPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLK---------HFDQEMVRILLSSLTKAGVSI-QCCVIEKVIS  308 (535)
Q Consensus       240 ~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~---------~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~  308 (535)
                      .+++|+|||+|+.|+.+|..|++.|.+|+++++ +.+..         .++.++.....+.+.+.||++ .++.+.. + 
T Consensus       142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~-~-  219 (471)
T PRK12810        142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRTNVEVGK-D-  219 (471)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEeCCEECC-c-
Confidence            357999999999999999999999999999998 65421         234556666667788889999 8876531 0 


Q ss_pred             eCCCcEEEEEecCCCCCceEEEcCEEEEccCCC
Q psy14461        309 SFDGMKGVRGFHPESKEPFADVFKTVVNAMEKK  341 (535)
Q Consensus       309 ~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~  341 (535)
                             +..    +..  ...+|.|++|+|..
T Consensus       220 -------~~~----~~~--~~~~d~vvlAtGa~  239 (471)
T PRK12810        220 -------ITA----EEL--LAEYDAVFLGTGAY  239 (471)
T ss_pred             -------CCH----HHH--HhhCCEEEEecCCC
Confidence                   111    111  35789999999997

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=97.59  E-value=0.00044  Score=73.79  Aligned_cols=91  Identities=22%  Similarity=0.212  Sum_probs=63.2

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEcCcCCcc-------------------------------------Cc-H---
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKH-------------------------------------FD-Q---  281 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~l~~-------------------------------------~~-~---  281 (535)
                      .|+|||+|+.|+.+|..++++|.+|++++++.+...                                     ++ +   
T Consensus         4 DvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~   83 (450)
T TIGR01421         4 DYLVIGGGSGGIASARRAAEHGAKALLVEAKKLGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTFNWPELK   83 (450)
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEecccccccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCccCHHHHH
Confidence            699999999999999999999999999987211100                                     00 0   


Q ss_pred             --------HHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCC
Q psy14461        282 --------EMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFA  345 (535)
Q Consensus       282 --------~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~  345 (535)
                              .+.+.+...+++.||++ .++..  +..  +.  +|++    +|+  .+.+|.+|+|||.+|...
T Consensus        84 ~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~--~~~--~~--~v~v----~~~--~~~~d~vIiAtGs~p~~p  144 (450)
T TIGR01421        84 EKRDAYVDRLNGIYQKNLEKNKVDVIFGHAR--FTK--DG--TVEV----NGR--DYTAPHILIATGGKPSFP  144 (450)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCEEEEEEEE--Ecc--CC--EEEE----CCE--EEEeCEEEEecCCCCCCC
Confidence                    11222445567779998 76543  221  22  3444    455  699999999999998755

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK07045 putative monooxygenase; Reviewed

Probab=97.59  E-value=0.00089  Score=69.99  Aligned_cols=99  Identities=23%  Similarity=0.233  Sum_probs=70.5

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCc--c---Cc-----------------------------------
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLK--H---FD-----------------------------------  280 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~--~---~~-----------------------------------  280 (535)
                      -+|+|||||+.|+-+|..|++.|.+|+++++ +.+.+  .   +.                                   
T Consensus         6 ~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~~   85 (388)
T PRK07045          6 VDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHDKEL   85 (388)
T ss_pred             eEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecCCcE
Confidence            4799999999999999999999999999997 53210  0   00                                   


Q ss_pred             --------------------HHHHHHHHHhhh-cCCeEE-cceEEEEEEEeCCCc-EEEEEecCCCCCceEEEcCEEEEc
Q psy14461        281 --------------------QEMVRILLSSLT-KAGVSI-QCCVIEKVISSFDGM-KGVRGFHPESKEPFADVFKTVVNA  337 (535)
Q Consensus       281 --------------------~~~~~~~~~~l~-~~gV~i-~~~~v~~i~~~~~~~-~~v~~~~~~~G~~~~~~~D~vi~a  337 (535)
                                          .++.+.+.+.+. ..|+++ .+++++.++.++++. +.|++   .+|+  ++.+|+||-|
T Consensus        86 ~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~---~~g~--~~~~~~vIgA  160 (388)
T PRK07045         86 IASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTL---SDGE--RVAPTVLVGA  160 (388)
T ss_pred             EEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEe---CCCC--EEECCEEEEC
Confidence                                011222333333 347999 999999998764443 34665   3676  7999999999


Q ss_pred             cCCCCCCC
Q psy14461        338 MEKKFDFA  345 (535)
Q Consensus       338 ~G~~p~~~  345 (535)
                      .|......
T Consensus       161 DG~~S~vR  168 (388)
T PRK07045        161 DGARSMIR  168 (388)
T ss_pred             CCCChHHH
Confidence            99886544

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=97.59  E-value=0.00046  Score=72.20  Aligned_cols=97  Identities=14%  Similarity=0.129  Sum_probs=70.3

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC-c---------------------------cC-------------
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL-K---------------------------HF-------------  279 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l-~---------------------------~~-------------  279 (535)
                      -+|+|||||+.|+-+|..|++.|.+|+++++ +... .                           .+             
T Consensus         6 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~   85 (391)
T PRK08020          6 TDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRRLET   85 (391)
T ss_pred             ccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccceEEE
Confidence            4799999999999999999999999999997 4100 0                           00             


Q ss_pred             -------------------------cHHHHHHHHHhhhcC-CeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcC
Q psy14461        280 -------------------------DQEMVRILLSSLTKA-GVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFK  332 (535)
Q Consensus       280 -------------------------~~~~~~~~~~~l~~~-gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D  332 (535)
                                               ...+.+.+.+.+.+. |+++ .+++++++... ++.+.|++.   +|+  ++.+|
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~-~~~~~v~~~---~g~--~~~a~  159 (391)
T PRK08020         86 WEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRD-DDGWELTLA---DGE--EIQAK  159 (391)
T ss_pred             EeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEc-CCeEEEEEC---CCC--EEEeC
Confidence                                     011122333444444 8999 89999998765 455666663   666  79999


Q ss_pred             EEEEccCCCCCC
Q psy14461        333 TVVNAMEKKFDF  344 (535)
Q Consensus       333 ~vi~a~G~~p~~  344 (535)
                      +||.|.|.....
T Consensus       160 ~vI~AdG~~S~v  171 (391)
T PRK08020        160 LVIGADGANSQV  171 (391)
T ss_pred             EEEEeCCCCchh
Confidence            999999988754

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=97.58  E-value=0.00012  Score=85.05  Aligned_cols=91  Identities=21%  Similarity=0.193  Sum_probs=66.7

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC-------c--cCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEe
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL-------K--HFDQEMVRILLSSLTKAGVSI-QCCVIEKVISS  309 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l-------~--~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~  309 (535)
                      .++|+|||||+.|+.+|..|+++|.+|+|+++ +.+.       |  .++.++.+...+.+++.||++ ++..+.     
T Consensus       430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~~Gv~~~~~~~vg-----  504 (1006)
T PRK12775        430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDIGVKIETNKVIG-----  504 (1006)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeeccCCccCCCHHHHHHHHHHHHHCCCEEEeCCccC-----
Confidence            47899999999999999999999999999998 6542       2  235677777788888999999 886441     


Q ss_pred             CCCcEEEEEecCCCCCceEEEcCEEEEccCCC-CCC
Q psy14461        310 FDGMKGVRGFHPESKEPFADVFKTVVNAMEKK-FDF  344 (535)
Q Consensus       310 ~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~-p~~  344 (535)
                        .  .++++.. . +  ...+|.||+|||.. |..
T Consensus       505 --~--~~~~~~l-~-~--~~~yDaViIATGa~~pr~  532 (1006)
T PRK12775        505 --K--TFTVPQL-M-N--DKGFDAVFLGVGAGAPTF  532 (1006)
T ss_pred             --C--ccCHHHH-h-h--ccCCCEEEEecCCCCCCC
Confidence              1  1222110 0 0  24589999999984 554

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.57  E-value=0.00054  Score=73.43  Aligned_cols=94  Identities=19%  Similarity=0.109  Sum_probs=63.0

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEcCcCCcc------------------------------------Cc-HHHHH
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKH------------------------------------FD-QEMVR  285 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~l~~------------------------------------~~-~~~~~  285 (535)
                      +|+|||||+.|+.+|..++++|.+|.++++..+...                                    ++ .++.+
T Consensus         6 DvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~   85 (462)
T PRK06416          6 DVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEKLGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAENVGIDFKKVQE   85 (462)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEeccccccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCCCccCHHHHHH
Confidence            699999999999999999999999999998222100                                    00 11111


Q ss_pred             H-----------HHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCC
Q psy14461        286 I-----------LLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDF  344 (535)
Q Consensus       286 ~-----------~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~  344 (535)
                      +           +...+++.||++ .+. ++.++   ...+.|...   +|. .++.+|.+|+|||.+|..
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~~~---~~~~~v~~~---~~~-~~~~~d~lViAtGs~p~~  148 (462)
T PRK06416         86 WKNGVVNRLTGGVEGLLKKNKVDIIRGE-AKLVD---PNTVRVMTE---DGE-QTYTAKNIILATGSRPRE  148 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEcc---CCEEEEecC---CCc-EEEEeCEEEEeCCCCCCC
Confidence            1           334566789998 653 44343   233444431   232 379999999999999864

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=97.57  E-value=0.00023  Score=81.73  Aligned_cols=87  Identities=17%  Similarity=0.159  Sum_probs=62.0

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC-------c--cCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEe
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL-------K--HFDQEMVRILLSSLTKAGVSI-QCCVIEKVISS  309 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l-------~--~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~  309 (535)
                      +++|+|||||+.|+.+|..|++.|.+|+|+++ +.+.       |  ..+.+......+.+.+.||++ .+....     
T Consensus       537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~IP~~rlp~e~l~~~ie~l~~~GVe~~~g~~~d-----  611 (1012)
T TIGR03315       537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVKFHGVEFKYGCSPD-----  611 (1012)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeecccccCCCHHHHHHHHHHHHhcCcEEEEecccc-----
Confidence            36899999999999999999999999999998 5432       1  123445555556677789998 763210     


Q ss_pred             CCCcEEEEEecCCCCCceEEEcCEEEEccCCCCC
Q psy14461        310 FDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFD  343 (535)
Q Consensus       310 ~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~  343 (535)
                            +.+.   +.+  ...+|.|++|+|..+.
T Consensus       612 ------~~ve---~l~--~~gYDaVIIATGA~~~  634 (1012)
T TIGR03315       612 ------LTVA---ELK--NQGYKYVILAIGAWKH  634 (1012)
T ss_pred             ------eEhh---hhh--cccccEEEECCCCCCC
Confidence                  1121   222  4568999999998754

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=97.55  E-value=0.005  Score=64.90  Aligned_cols=54  Identities=17%  Similarity=0.153  Sum_probs=40.3

Q ss_pred             HHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcE-EEEEecCCCCCceEEEcCEEEEccCCC
Q psy14461        281 QEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMK-GVRGFHPESKEPFADVFKTVVNAMEKK  341 (535)
Q Consensus       281 ~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~-~v~~~~~~~G~~~~~~~D~vi~a~G~~  341 (535)
                      ..+...+.+.+++.|+++ .++.|++++.+ ++.+ .|+.    ++.  ++.+|.||+|+|.-
T Consensus       201 ~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~-~~~~~~v~t----~~~--~~~a~~VV~a~G~~  256 (416)
T PRK00711        201 QLFTQRLAAMAEQLGVKFRFNTPVDGLLVE-GGRITGVQT----GGG--VITADAYVVALGSY  256 (416)
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCEEEEEEe----CCc--EEeCCEEEECCCcc
Confidence            356667777788899999 99999999875 3443 3443    333  68999999999964

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=97.54  E-value=0.0009  Score=69.91  Aligned_cols=95  Identities=17%  Similarity=0.091  Sum_probs=66.6

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCc-----cC-------------------------------------
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLK-----HF-------------------------------------  279 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~-----~~-------------------------------------  279 (535)
                      .|+|||+|+.|+-+|..|++.|.+|+++++ +.+..     .+                                     
T Consensus         1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG   80 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence            489999999999999999999999999997 43210     00                                     


Q ss_pred             ---cHHHHHHHHHhhhcCCeEEcceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCC
Q psy14461        280 ---DQEMVRILLSSLTKAGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKF  342 (535)
Q Consensus       280 ---~~~~~~~~~~~l~~~gV~i~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p  342 (535)
                         ..++.+.+.+.+.+.|+++...++..+...+++...|++   .+|+  ++.+|.||.|+|..+
T Consensus        81 ~i~~~~l~~~l~~~~~~~gv~~~~~~v~~i~~~~~~~~~v~~---~~g~--~~~a~~VI~A~G~~s  141 (388)
T TIGR01790        81 SVDSTRLHEELLQKCPEGGVLWLERKAIHAEADGVALSTVYC---AGGQ--RIQARLVIDARGFGP  141 (388)
T ss_pred             EEcHHHHHHHHHHHHHhcCcEEEccEEEEEEecCCceeEEEe---CCCC--EEEeCEEEECCCCch
Confidence               012233444555666888844467777654233445665   3665  799999999999887

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=97.54  E-value=0.00087  Score=69.94  Aligned_cols=97  Identities=15%  Similarity=0.068  Sum_probs=69.1

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCc---------------------cC--------------------
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLK---------------------HF--------------------  279 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~---------------------~~--------------------  279 (535)
                      -+|+|||||+.|+-+|..|++.|.+|+++++ +.+..                     .+                    
T Consensus         6 ~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~   85 (388)
T PRK07608          6 FDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMRVF   85 (388)
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEEEE
Confidence            4799999999999999999999999999998 44211                     00                    


Q ss_pred             ------------------------cHHHHHHHHHhhhcCC-eEEcceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEE
Q psy14461        280 ------------------------DQEMVRILLSSLTKAG-VSIQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTV  334 (535)
Q Consensus       280 ------------------------~~~~~~~~~~~l~~~g-V~i~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~v  334 (535)
                                              ...+.+.+.+.+++.| +++.+.++++++.. ++.+.|++.   +|+  ++.+|.+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~~~~v~~i~~~-~~~~~v~~~---~g~--~~~a~~v  159 (388)
T PRK07608         86 GDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWFPARAQGLEVD-PDAATLTLA---DGQ--VLRADLV  159 (388)
T ss_pred             ECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEEcceeEEEEec-CCeEEEEEC---CCC--EEEeeEE
Confidence                                    0112233444455566 77756678888755 455666663   565  7999999


Q ss_pred             EEccCCCCCC
Q psy14461        335 VNAMEKKFDF  344 (535)
Q Consensus       335 i~a~G~~p~~  344 (535)
                      |.|.|.....
T Consensus       160 I~adG~~S~v  169 (388)
T PRK07608        160 VGADGAHSWV  169 (388)
T ss_pred             EEeCCCCchH
Confidence            9999987543

>PLN02463 lycopene beta cyclase

Probab=97.54  E-value=0.00055  Score=72.67  Aligned_cols=127  Identities=9%  Similarity=-0.027  Sum_probs=68.0

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccccc-ccc---cccccccchhh-ccccccc-ccc-----cccC
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKK-RRL---YYPVAMSDLEL-EQDSTSA-LNV-----TIRN  156 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~-~l~---~~~~~i~~~~~-~~~~~~~-~~~-----~~~~  156 (535)
                      .++|+|||+|++|+++|......+.+|+|+|+.+...+.+. +..   ....++..... ..+.... .+.     ....
T Consensus        28 ~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~~~  107 (447)
T PLN02463         28 VVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDLDRP  107 (447)
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCccccCc
Confidence            47899999999999999888888999999999764322111 000   00000111000 0000000 000     0000


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEec--C--CEEEEce-eEEEcceEEEeeCceec
Q psy14461        157 WNAATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTN--P--HTIKLSN-RSVTGFNFLLAVERRCL  220 (535)
Q Consensus       157 ~~~l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~--~--~~v~~~~-~~~~~d~lViATGs~p~  220 (535)
                      +..+ . +    ..+...+.+.+...||+++.+++..+.  +  ..|++++ .++.+|.||.|+|....
T Consensus       108 y~~V-~-R----~~L~~~Ll~~~~~~GV~~~~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~  170 (447)
T PLN02463        108 YGRV-N-R----KKLKSKMLERCIANGVQFHQAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRC  170 (447)
T ss_pred             ceeE-E-H----HHHHHHHHHHHhhcCCEEEeeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcC
Confidence            0000 0 1    122233334456679998776665432  2  2355544 58999999999998654

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=97.53  E-value=0.0013  Score=68.95  Aligned_cols=103  Identities=11%  Similarity=-0.001  Sum_probs=69.2

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC--cc-----Cc--------------------------------
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL--KH-----FD--------------------------------  280 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l--~~-----~~--------------------------------  280 (535)
                      +.+|+|||||+.|+-+|..|++.|.+|+|+++ +...  ..     +.                                
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~   81 (390)
T TIGR02360         2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFDG   81 (390)
T ss_pred             CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeCC
Confidence            35799999999999999999999999999998 5311  00     00                                


Q ss_pred             ---------------------HHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEcc
Q psy14461        281 ---------------------QEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAM  338 (535)
Q Consensus       281 ---------------------~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~  338 (535)
                                           ..+...+.+.+.+.|+.+ .+.+++.+...+++...|++..  +|+..++.+|+||-|-
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~~V~~~~--~g~~~~i~adlvIGAD  159 (390)
T TIGR02360        82 QRFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDRPYVTFER--DGERHRLDCDFIAGCD  159 (390)
T ss_pred             EEEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCccEEEEEE--CCeEEEEEeCEEEECC
Confidence                                 011122333344557777 7777766654223445666642  5655578999999999


Q ss_pred             CCCCCCC
Q psy14461        339 EKKFDFA  345 (535)
Q Consensus       339 G~~p~~~  345 (535)
                      |......
T Consensus       160 G~~S~VR  166 (390)
T TIGR02360       160 GFHGVSR  166 (390)
T ss_pred             CCchhhH
Confidence            9876543

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PRK07538 hypothetical protein; Provisional

Probab=97.52  E-value=0.0011  Score=69.99  Aligned_cols=101  Identities=16%  Similarity=0.117  Sum_probs=68.4

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc-----C-------------c-----------------------
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH-----F-------------D-----------------------  280 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~-----~-------------~-----------------------  280 (535)
                      +|+|||||+.|+-+|..|++.|.+|+++++ +.+.+.     +             .                       
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~~g~~~   81 (413)
T PRK07538          2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNRHGQRI   81 (413)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcCCCCEE
Confidence            699999999999999999999999999998 532110     0             0                       


Q ss_pred             --------------------HHHHHHHHHhhhc-CC-eEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEc
Q psy14461        281 --------------------QEMVRILLSSLTK-AG-VSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNA  337 (535)
Q Consensus       281 --------------------~~~~~~~~~~l~~-~g-V~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a  337 (535)
                                          .++.+.+.+.+.+ .| +.+ .++++++++.++ +.+.+.+.+..+|+.+++.+|+||-|
T Consensus        82 ~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~-~~~~~~~~~~~~g~~~~~~adlvIgA  160 (413)
T PRK07538         82 WSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDA-DVTVVFLGDRAGGDLVSVRGDVLIGA  160 (413)
T ss_pred             eeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecC-CceEEEEeccCCCccceEEeeEEEEC
Confidence                                0111122222222 35 468 999999998663 33555554323444458999999999


Q ss_pred             cCCCCCC
Q psy14461        338 MEKKFDF  344 (535)
Q Consensus       338 ~G~~p~~  344 (535)
                      -|.....
T Consensus       161 DG~~S~v  167 (413)
T PRK07538        161 DGIHSAV  167 (413)
T ss_pred             CCCCHHH
Confidence            9987654

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.51  E-value=0.0002  Score=79.80  Aligned_cols=89  Identities=16%  Similarity=0.162  Sum_probs=67.4

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC-------c--cCcHHHHHHHHHhhhcCCeEE-cceEEEEEEE
Q psy14461        240 WPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL-------K--HFDQEMVRILLSSLTKAGVSI-QCCVIEKVIS  308 (535)
Q Consensus       240 ~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l-------~--~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~  308 (535)
                      .+++|+|||+|+.|+.+|..|++.|.+|+++++ +.+.       |  .++.++.+...+.+++.||++ +++.+..   
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~---  385 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGR---  385 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCC---
Confidence            368999999999999999999999999999998 6532       1  256677666677888999999 8876521   


Q ss_pred             eCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCC
Q psy14461        309 SFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFD  343 (535)
Q Consensus       309 ~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~  343 (535)
                            .+.+.   +.   ...+|.||+|+|..+.
T Consensus       386 ------~~~~~---~l---~~~~DaV~latGa~~~  408 (639)
T PRK12809        386 ------DITFS---DL---TSEYDAVFIGVGTYGM  408 (639)
T ss_pred             ------cCCHH---HH---HhcCCEEEEeCCCCCC
Confidence                  01221   11   3468999999998653

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=97.51  E-value=0.0014  Score=59.22  Aligned_cols=31  Identities=10%  Similarity=-0.110  Sum_probs=24.7

Q ss_pred             EeeCCccHHHHHHHHHhh-----CCCeEEEEecCCc
Q psy14461         92 DRIGDEGILLEEELKRQT-----NQRRDELQERGSH  122 (535)
Q Consensus        92 ~iiG~G~aG~~~al~~~~-----~~~~V~lie~~~~  122 (535)
                      +|||+|++|++.+..+..     ...+|+|||+.+.
T Consensus         1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~   36 (156)
T PF13454_consen    1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF   36 (156)
T ss_pred             CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence            589999999998865543     3689999999654

>PLN02661 Putative thiazole synthesis

Probab=97.51  E-value=0.004  Score=63.29  Aligned_cols=162  Identities=18%  Similarity=0.206  Sum_probs=93.9

Q ss_pred             CcEEEECCChHHHHHHHHHHhC-CCcEEEEEc-CcCCc----------c-----------------Cc-----------H
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFL-GVPVTLVYS-RRLLK----------H-----------------FD-----------Q  281 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~-g~~Vtlv~~-~~~l~----------~-----------------~~-----------~  281 (535)
                      -+|+|||+|..|+-+|..|++. |.+|+++++ ..+..          .                 ++           .
T Consensus        93 ~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~~dgy~vv~ha~  172 (357)
T PLN02661         93 TDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQENYVVIKHAA  172 (357)
T ss_pred             CCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcccCCCeeEecchH
Confidence            4799999999999999999976 899999998 43311          0                 00           0


Q ss_pred             HHHHHHH-HhhhcCCeEE-cceEEEEEEEeCCCcE-EEEEe------cCCCC---CceEEEcCEEEEccCCCCCCCCCCc
Q psy14461        282 EMVRILL-SSLTKAGVSI-QCCVIEKVISSFDGMK-GVRGF------HPESK---EPFADVFKTVVNAMEKKFDFAALNL  349 (535)
Q Consensus       282 ~~~~~~~-~~l~~~gV~i-~~~~v~~i~~~~~~~~-~v~~~------~~~~G---~~~~~~~D~vi~a~G~~p~~~~l~l  349 (535)
                      ++...+. +.+++.||++ .++.+.++..+ ++++ -|.+.      +..++   +...+.++.||+|||..+.......
T Consensus       173 e~~stLi~ka~~~~gVkI~~~t~V~DLI~~-~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~g~~ga~~~  251 (357)
T PLN02661        173 LFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGV  251 (357)
T ss_pred             HHHHHHHHHHHhcCCCEEEeCeEeeeEEec-CCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCCCcchhhhh
Confidence            1111223 2334578999 99999998765 3443 23321      00111   2246899999999996653221111


Q ss_pred             c---ccCeeecC-CC--ceEcCC-------CCCcCCCCEEEeCCcCC---CCCCcHHH--H-HHHHHHHHHHHhC
Q psy14461        350 H---HIGVDIKK-KS--YVVCNE-------KDQTSVGNIFAVGGIVH---GKPNNASM--A-AISARLIIERLYG  405 (535)
Q Consensus       350 ~---~~gl~~~~-~G--~i~vd~-------~~~T~~~~IyA~GD~~~---~~~~~~~~--A-~~~g~~aa~~i~g  405 (535)
                      .   ..|+. .+ .|  .+.++.       +.+-=+||+|++|=.++   |.|...+.  + .-.|+.||+-|+.
T Consensus       252 ~~~~~~g~~-~~~pg~~~~~~~~~e~~~v~~t~ev~pgl~~~gm~~~~~~g~~rmgp~fg~m~~sg~k~a~~~~~  325 (357)
T PLN02661        252 KRLKSIGMI-DSVPGMKALDMNAAEDAIVRLTREVVPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHLALK  325 (357)
T ss_pred             hcccccCCc-cCCCCccccchhhHHHHHHhccCcccCCEEEeccchhhhcCCCccCchhHhHHhhhHHHHHHHHH
Confidence            1   11110 00 01  111111       11123799999997765   44444432  3 4578888888874

>PRK06370 mercuric reductase; Validated

Probab=97.50  E-value=0.00084  Score=71.99  Aligned_cols=93  Identities=18%  Similarity=0.103  Sum_probs=62.9

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEcCcCCc-------------------------------------cCc-HHH
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLK-------------------------------------HFD-QEM  283 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~l~-------------------------------------~~~-~~~  283 (535)
                      -.|+|||+|+.|+.+|..++++|.+|+++++..+..                                     .++ +++
T Consensus         6 ~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~   85 (463)
T PRK06370          6 YDAIVIGAGQAGPPLAARAAGLGMKVALIERGLLGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPVSVDFKAV   85 (463)
T ss_pred             ccEEEECCCHHHHHHHHHHHhCCCeEEEEecCccCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccCccCHHHH
Confidence            469999999999999999999999999999721100                                     000 011


Q ss_pred             H-----------HHHHHhhhcC-CeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCC
Q psy14461        284 V-----------RILLSSLTKA-GVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAA  346 (535)
Q Consensus       284 ~-----------~~~~~~l~~~-gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~  346 (535)
                      .           ..+...+++. ||++ .++.+. +.   .  .+|++    +|+  ++.+|.+|+|||.+|....
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~-~~---~--~~v~v----~~~--~~~~d~lViATGs~p~~p~  149 (463)
T PRK06370         86 MARKRRIRARSRHGSEQWLRGLEGVDVFRGHARF-ES---P--NTVRV----GGE--TLRAKRIFINTGARAAIPP  149 (463)
T ss_pred             HHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEE-cc---C--CEEEE----CcE--EEEeCEEEEcCCCCCCCCC
Confidence            1           2233445665 8988 766542 11   1  23544    454  7899999999999997654

>PLN02697 lycopene epsilon cyclase

Probab=97.49  E-value=0.0012  Score=71.47  Aligned_cols=96  Identities=16%  Similarity=0.158  Sum_probs=67.3

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccC------------c----------------------------
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHF------------D----------------------------  280 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~------------~----------------------------  280 (535)
                      -.|+|||+|+.|+.+|..|++.|.+|.++++ ..+....            +                            
T Consensus       109 ~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~Yg~  188 (529)
T PLN02697        109 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRAYGR  188 (529)
T ss_pred             ccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeeccCcccE
Confidence            4699999999999999999999999999986 2221100            0                            


Q ss_pred             ---HHHHHHHHHhhhcCCeEEcceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCC
Q psy14461        281 ---QEMVRILLSSLTKAGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKF  342 (535)
Q Consensus       281 ---~~~~~~~~~~l~~~gV~i~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p  342 (535)
                         ..+.+.+.+.+.+.|+++.+.+|+++... ++.+.+...  .+|.  ++.+|.||.|+|..+
T Consensus       189 V~R~~L~~~Ll~~a~~~GV~~~~~~V~~I~~~-~~~~~vv~~--~dG~--~i~A~lVI~AdG~~S  248 (529)
T PLN02697        189 VSRTLLHEELLRRCVESGVSYLSSKVDRITEA-SDGLRLVAC--EDGR--VIPCRLATVASGAAS  248 (529)
T ss_pred             EcHHHHHHHHHHHHHhcCCEEEeeEEEEEEEc-CCcEEEEEE--cCCc--EEECCEEEECCCcCh
Confidence               12223444555667888866688888765 344433222  2666  799999999999876

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=97.49  E-value=0.00097  Score=71.37  Aligned_cols=30  Identities=33%  Similarity=0.319  Sum_probs=29.1

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      +|+|||+|+.|+.+|..+++.|.+|+++++
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~   31 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDE   31 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEEC
Confidence            699999999999999999999999999998

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=97.48  E-value=0.0012  Score=68.82  Aligned_cols=98  Identities=14%  Similarity=0.054  Sum_probs=69.7

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-C--cCC---c------cCcH-------------HH-------------
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-R--RLL---K------HFDQ-------------EM-------------  283 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~--~~l---~------~~~~-------------~~-------------  283 (535)
                      -+|+|||||+.|+-+|..|++.|.+|+++++ +  ...   +      .+.+             .+             
T Consensus         4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~~~   83 (384)
T PRK08849          4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRLET   83 (384)
T ss_pred             ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceEEE
Confidence            3699999999999999999999999999997 4  110   0      0000             00             


Q ss_pred             -----------------------------HHHHHHhhhc-CCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcC
Q psy14461        284 -----------------------------VRILLSSLTK-AGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFK  332 (535)
Q Consensus       284 -----------------------------~~~~~~~l~~-~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D  332 (535)
                                                   ...+.+.+.+ .|+++ .++++++++.+ ++.+.|+++   +|+  ++++|
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~-~~~~~v~~~---~g~--~~~~~  157 (384)
T PRK08849         84 WEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFS-AEGNRVTLE---SGA--EIEAK  157 (384)
T ss_pred             EeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEc-CCeEEEEEC---CCC--EEEee
Confidence                                         0011112222 36888 89999999876 455677774   676  89999


Q ss_pred             EEEEccCCCCCCC
Q psy14461        333 TVVNAMEKKFDFA  345 (535)
Q Consensus       333 ~vi~a~G~~p~~~  345 (535)
                      +||.|.|..+...
T Consensus       158 lvIgADG~~S~vR  170 (384)
T PRK08849        158 WVIGADGANSQVR  170 (384)
T ss_pred             EEEEecCCCchhH
Confidence            9999999988764

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=97.47  E-value=0.00068  Score=70.79  Aligned_cols=126  Identities=11%  Similarity=-0.047  Sum_probs=66.3

Q ss_pred             EEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccccc-ccccc---cccccchhh-ccccccccc--c--cccCHHHH
Q psy14461         90 YLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKK-RRLYY---PVAMSDLEL-EQDSTSALN--V--TIRNWNAA  160 (535)
Q Consensus        90 ~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~-~l~~~---~~~i~~~~~-~~~~~~~~~--~--~~~~~~~l  160 (535)
                      ||+|||+|++|+.+|..+...+.+|+|+|+.+..+.... ++...   ..++..... ...+.....  .  ...+....
T Consensus         1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG   80 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence            579999999999999888788999999999875432211 11000   000000000 000000000  0  00000000


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEec---CC--EEEEce-eEEEcceEEEeeCcee
Q psy14461        161 TKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTN---PH--TIKLSN-RSVTGFNFLLAVERRC  219 (535)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~---~~--~v~~~~-~~~~~d~lViATGs~p  219 (535)
                      .-..    ..+...+.+.+...|++++.+++..+.   ..  .|++++ .++++|.||.|+|..+
T Consensus        81 ~i~~----~~l~~~l~~~~~~~gv~~~~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s  141 (388)
T TIGR01790        81 SVDS----TRLHEELLQKCPEGGVLWLERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP  141 (388)
T ss_pred             EEcH----HHHHHHHHHHHHhcCcEEEccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence            0000    122233344556668998877765532   22  344444 5899999999999876

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=97.45  E-value=0.0013  Score=69.10  Aligned_cols=97  Identities=15%  Similarity=0.131  Sum_probs=69.3

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcC-C----c-----cCc-------------HH---------------
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRL-L----K-----HFD-------------QE---------------  282 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~-l----~-----~~~-------------~~---------------  282 (535)
                      .+|+|||||++|+-+|..|++.|.+|+++++ ... .    +     .+.             ++               
T Consensus         5 ~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~   84 (405)
T PRK08850          5 VDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAMEVW   84 (405)
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEEEEE
Confidence            4799999999999999999999999999997 310 0    0     000             00               


Q ss_pred             ----------------------------HHHHHHHhhhc-CCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcC
Q psy14461        283 ----------------------------MVRILLSSLTK-AGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFK  332 (535)
Q Consensus       283 ----------------------------~~~~~~~~l~~-~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D  332 (535)
                                                  +...+.+.+.+ .||++ .+.++++++.+ ++.+.|++.   +|+  ++.+|
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~-~~~~~v~~~---~g~--~~~a~  158 (405)
T PRK08850         85 EQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVG-ESEAWLTLD---NGQ--ALTAK  158 (405)
T ss_pred             eCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEee-CCeEEEEEC---CCC--EEEeC
Confidence                                        11122222333 47999 99999999765 455677773   676  89999


Q ss_pred             EEEEccCCCCCC
Q psy14461        333 TVVNAMEKKFDF  344 (535)
Q Consensus       333 ~vi~a~G~~p~~  344 (535)
                      +||.|.|.....
T Consensus       159 lvIgADG~~S~v  170 (405)
T PRK08850        159 LVVGADGANSWL  170 (405)
T ss_pred             EEEEeCCCCChh
Confidence            999999987654

>PLN02507 glutathione reductase

Probab=97.45  E-value=0.0016  Score=70.52  Aligned_cols=100  Identities=15%  Similarity=0.027  Sum_probs=65.4

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc----------CcCCcc------CcH------------------------
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS----------RRLLKH------FDQ------------------------  281 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~----------~~~l~~------~~~------------------------  281 (535)
                      -.++|||+|+.|+.+|..++++|.+|.++++          +.+...      .+.                        
T Consensus        26 yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G~~~~  105 (499)
T PLN02507         26 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYGWEIN  105 (499)
T ss_pred             cCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcCcccC
Confidence            3699999999999999999999999999994          111000      000                        


Q ss_pred             -----H--------------HHHHHHHhhhcCCeEEcceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCC
Q psy14461        282 -----E--------------MVRILLSSLTKAGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKF  342 (535)
Q Consensus       282 -----~--------------~~~~~~~~l~~~gV~i~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p  342 (535)
                           +              +...+++.+++.||++...++..++   ...+.|+.   .+|++.++.+|.+|+|||.+|
T Consensus       106 ~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g~a~~vd---~~~v~V~~---~~g~~~~~~~d~LIIATGs~p  179 (499)
T PLN02507        106 EKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEGEGKIVG---PNEVEVTQ---LDGTKLRYTAKHILIATGSRA  179 (499)
T ss_pred             CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEec---CCEEEEEe---CCCcEEEEEcCEEEEecCCCC
Confidence                 0              0011223345567887223444443   34456665   367655789999999999998


Q ss_pred             CCCCC
Q psy14461        343 DFAAL  347 (535)
Q Consensus       343 ~~~~l  347 (535)
                      ....+
T Consensus       180 ~~p~i  184 (499)
T PLN02507        180 QRPNI  184 (499)
T ss_pred             CCCCC
Confidence            76543

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=97.44  E-value=0.0012  Score=71.90  Aligned_cols=33  Identities=12%  Similarity=-0.022  Sum_probs=31.0

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCC
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGS  121 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~  121 (535)
                      +||+|||+|+||+.+|+.....+.+|+|+|+..
T Consensus         5 yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~   37 (618)
T PRK05192          5 YDVIVVGGGHAGCEAALAAARMGAKTLLLTHNL   37 (618)
T ss_pred             ceEEEECchHHHHHHHHHHHHcCCcEEEEeccc
Confidence            789999999999999999999999999999984

>TIGR00275 flavoprotein, HI0933 family

Probab=97.44  E-value=0.00096  Score=70.08  Aligned_cols=91  Identities=22%  Similarity=0.287  Sum_probs=66.1

Q ss_pred             EEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc-----------------------C---------------------
Q psy14461        245 LVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH-----------------------F---------------------  279 (535)
Q Consensus       245 vViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~-----------------------~---------------------  279 (535)
                      +|||||+.|+-+|..+++.|.+|+++++ +.+...                       .                     
T Consensus         1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~   80 (400)
T TIGR00275         1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLID   80 (400)
T ss_pred             CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHHH
Confidence            5899999999999999999999999997 543210                       0                     


Q ss_pred             -----------------------cHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEE
Q psy14461        280 -----------------------DQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVV  335 (535)
Q Consensus       280 -----------------------~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi  335 (535)
                                             ..++.+.+.+.+++.|+++ .++.++++... ++.+.++.    +++  ++.+|.||
T Consensus        81 ~~~~~Gv~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~-~~~~~v~~----~~~--~i~ad~VI  153 (400)
T TIGR00275        81 FFESLGLELKVEEDGRVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKD-DNGFGVET----SGG--EYEADKVI  153 (400)
T ss_pred             HHHHcCCeeEEecCCEeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEec-CCeEEEEE----CCc--EEEcCEEE
Confidence                                   0112233445566788999 99999999765 34455554    444  68999999


Q ss_pred             EccCCCC
Q psy14461        336 NAMEKKF  342 (535)
Q Consensus       336 ~a~G~~p  342 (535)
                      +|+|...
T Consensus       154 lAtG~~s  160 (400)
T TIGR00275       154 LATGGLS  160 (400)
T ss_pred             ECCCCcc
Confidence            9999753

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.44  E-value=0.00028  Score=76.04  Aligned_cols=79  Identities=23%  Similarity=0.104  Sum_probs=61.2

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEE
Q psy14461        240 WPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVR  317 (535)
Q Consensus       240 ~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~  317 (535)
                      .+++|+|||+|.+|+++|..|+++|.+|+++++ +.       +....+.+.|++.||++ .+..+.             
T Consensus        15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~-------~~~~~~~~~l~~~gv~~~~~~~~~-------------   74 (480)
T PRK01438         15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD-------ERHRALAAILEALGATVRLGPGPT-------------   74 (480)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch-------hhhHHHHHHHHHcCCEEEECCCcc-------------
Confidence            357899999999999999999999999999986 42       22334556677788888 654321             


Q ss_pred             EecCCCCCceEEEcCEEEEccCCCCCCCCC
Q psy14461        318 GFHPESKEPFADVFKTVVNAMEKKFDFAAL  347 (535)
Q Consensus       318 ~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l  347 (535)
                      .         ...+|+||+++|.+|+.+.+
T Consensus        75 ~---------~~~~D~Vv~s~Gi~~~~~~~   95 (480)
T PRK01438         75 L---------PEDTDLVVTSPGWRPDAPLL   95 (480)
T ss_pred             c---------cCCCCEEEECCCcCCCCHHH
Confidence            1         24589999999999999864

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.44  E-value=0.00028  Score=78.94  Aligned_cols=88  Identities=15%  Similarity=0.174  Sum_probs=65.4

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC-------c--cCcHHHHHHHHHhhhcCCeEE-cceEEEEEEE
Q psy14461        240 WPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL-------K--HFDQEMVRILLSSLTKAGVSI-QCCVIEKVIS  308 (535)
Q Consensus       240 ~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l-------~--~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~  308 (535)
                      .+++|+|||+|+.|+.+|..|++.|.+|+++++ +.+.       |  .++.++.....+.+++.||++ .++.+..   
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~---  402 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGK---  402 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCC---
Confidence            357999999999999999999999999999998 6532       2  245666666667788889999 8876521   


Q ss_pred             eCCCcEEEEEecCCCCCceEEEcCEEEEccCCCC
Q psy14461        309 SFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKF  342 (535)
Q Consensus       309 ~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p  342 (535)
                            .+.++   +-   ...+|.|++|+|..+
T Consensus       403 ------~i~~~---~~---~~~~DavilAtGa~~  424 (654)
T PRK12769        403 ------DISLE---SL---LEDYDAVFVGVGTYR  424 (654)
T ss_pred             ------cCCHH---HH---HhcCCEEEEeCCCCC
Confidence                  01121   11   246999999999754

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=97.44  E-value=0.00024  Score=79.24  Aligned_cols=89  Identities=15%  Similarity=0.098  Sum_probs=65.4

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC-------c--cCcHHHHHHHHHhhhcCCeEE-cceEEEEEEE
Q psy14461        240 WPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL-------K--HFDQEMVRILLSSLTKAGVSI-QCCVIEKVIS  308 (535)
Q Consensus       240 ~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l-------~--~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~  308 (535)
                      ..++|+|||+|+.|+.+|..|++.|.+|+++++ +.+.       +  .++.++.+...+.+.+.|+++ .++.+. +  
T Consensus       192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~-~--  268 (652)
T PRK12814        192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFG-R--  268 (652)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCccc-C--
Confidence            357999999999999999999999999999998 6541       2  235566666667778889999 776541 1  


Q ss_pred             eCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCC
Q psy14461        309 SFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFD  343 (535)
Q Consensus       309 ~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~  343 (535)
                            .+++.   +.   ...+|.||+|+|..+.
T Consensus       269 ------dv~~~---~~---~~~~DaVilAtGa~~~  291 (652)
T PRK12814        269 ------DITLE---EL---QKEFDAVLLAVGAQKA  291 (652)
T ss_pred             ------ccCHH---HH---HhhcCEEEEEcCCCCC
Confidence                  01221   12   2359999999998754

>PRK06185 hypothetical protein; Provisional

Probab=97.43  E-value=0.002  Score=67.75  Aligned_cols=99  Identities=17%  Similarity=0.207  Sum_probs=68.5

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCc-----cC--------------c---------------------
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLK-----HF--------------D---------------------  280 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~-----~~--------------~---------------------  280 (535)
                      .+|+|||||++|+-+|..|++.|.+|+++++ +.+..     .+              +                     
T Consensus         7 ~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~~~~~   86 (407)
T PRK06185          7 TDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEIGGRT   86 (407)
T ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEECCeE
Confidence            5799999999999999999999999999997 43210     00              0                     


Q ss_pred             ---------------------HHHHHHHHHhhhc-CCeEE-cceEEEEEEEeCCCcE-EEEEecCCCCCceEEEcCEEEE
Q psy14461        281 ---------------------QEMVRILLSSLTK-AGVSI-QCCVIEKVISSFDGMK-GVRGFHPESKEPFADVFKTVVN  336 (535)
Q Consensus       281 ---------------------~~~~~~~~~~l~~-~gV~i-~~~~v~~i~~~~~~~~-~v~~~~~~~G~~~~~~~D~vi~  336 (535)
                                           ..+.+.+.+.+.+ .|+++ .+++++++..+ ++.+ .|.+.. .+|+ .++.+|.||.
T Consensus        87 ~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~-~~~v~~v~~~~-~~g~-~~i~a~~vI~  163 (407)
T PRK06185         87 VTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEE-GGRVTGVRART-PDGP-GEIRADLVVG  163 (407)
T ss_pred             EEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEe-CCEEEEEEEEc-CCCc-EEEEeCEEEE
Confidence                                 1112233333333 48999 99999999776 3443 344432 2443 3799999999


Q ss_pred             ccCCCCC
Q psy14461        337 AMEKKFD  343 (535)
Q Consensus       337 a~G~~p~  343 (535)
                      |.|....
T Consensus       164 AdG~~S~  170 (407)
T PRK06185        164 ADGRHSR  170 (407)
T ss_pred             CCCCchH
Confidence            9998764

>PRK10015 oxidoreductase; Provisional

Probab=97.43  E-value=0.0018  Score=68.74  Aligned_cols=96  Identities=11%  Similarity=0.070  Sum_probs=67.8

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC------------------ccCc----------------------
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL------------------KHFD----------------------  280 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l------------------~~~~----------------------  280 (535)
                      -.|+|||||+.|+-+|..|++.|.+|.++++ +.+.                  +.+.                      
T Consensus         6 ~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~   85 (429)
T PRK10015          6 FDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFLTEESA   85 (429)
T ss_pred             cCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEEEeCCCc
Confidence            3699999999999999999999999999987 4321                  1000                      


Q ss_pred             ----------------------HHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEc
Q psy14461        281 ----------------------QEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNA  337 (535)
Q Consensus       281 ----------------------~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a  337 (535)
                                            ..+.+.+.+..++.|+++ .+++|+.+..+ ++.+.....   ++.  ++.+|.||.|
T Consensus        86 ~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~-~~~v~~v~~---~~~--~i~A~~VI~A  159 (429)
T PRK10015         86 VTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVRE-GNKVTGVQA---GDD--ILEANVVILA  159 (429)
T ss_pred             eEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEe-CCEEEEEEe---CCe--EEECCEEEEc
Confidence                                  011123445556779999 99999998765 344432221   333  7999999999


Q ss_pred             cCCCCC
Q psy14461        338 MEKKFD  343 (535)
Q Consensus       338 ~G~~p~  343 (535)
                      .|....
T Consensus       160 dG~~s~  165 (429)
T PRK10015        160 DGVNSM  165 (429)
T ss_pred             cCcchh
Confidence            997543

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=97.42  E-value=0.0029  Score=67.22  Aligned_cols=133  Identities=17%  Similarity=0.110  Sum_probs=83.2

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCc-EEEEEc-CcCCcc------------------------C--------cHHHHHHH
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVP-VTLVYS-RRLLKH------------------------F--------DQEMVRIL  287 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~-Vtlv~~-~~~l~~------------------------~--------~~~~~~~~  287 (535)
                      .+|+|||+|++|+-+|..|++.|.. +.++++ +.+...                        +        -.++..++
T Consensus         9 ~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~y~   88 (443)
T COG2072           9 TDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEIKDYI   88 (443)
T ss_pred             ccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcccHHHHH
Confidence            5799999999999999999999988 999988 532110                        0        02256677


Q ss_pred             HHhhhcCCeE--E-cceEEEEEEEeCC-CcEEEEEecCCCCCceEEEcCEEEEccCC--CCCCCCCCccccCeeecCCCc
Q psy14461        288 LSSLTKAGVS--I-QCCVIEKVISSFD-GMKGVRGFHPESKEPFADVFKTVVNAMEK--KFDFAALNLHHIGVDIKKKSY  361 (535)
Q Consensus       288 ~~~l~~~gV~--i-~~~~v~~i~~~~~-~~~~v~~~~~~~G~~~~~~~D~vi~a~G~--~p~~~~l~l~~~gl~~~~~G~  361 (535)
                      ...+++.++.  + .++.|+.+..+++ +..+|++.   +|...++.+|.|++|+|.  .|+.+.+    .|++.- .|.
T Consensus        89 ~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~---~~~~~~~~a~~vV~ATG~~~~P~iP~~----~G~~~f-~g~  160 (443)
T COG2072          89 KDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTS---DGGTGELTADFVVVATGHLSEPYIPDF----AGLDEF-KGR  160 (443)
T ss_pred             HHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEc---CCCeeeEecCEEEEeecCCCCCCCCCC----CCccCC-Cce
Confidence            7777766544  3 4555555554433 35678775   444223779999999997  3444333    123211 343


Q ss_pred             eEcC----CCCCcCCCCEEEeCCcC
Q psy14461        362 VVCN----EKDQTSVGNIFAVGGIV  382 (535)
Q Consensus       362 i~vd----~~~~T~~~~IyA~GD~~  382 (535)
                      +.=-    +.....-++|-++|--+
T Consensus       161 ~~HS~~~~~~~~~~GKrV~VIG~Ga  185 (443)
T COG2072         161 ILHSADWPNPEDLRGKRVLVIGAGA  185 (443)
T ss_pred             EEchhcCCCccccCCCeEEEECCCc
Confidence            2211    12233557899999655

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=97.41  E-value=0.0015  Score=70.97  Aligned_cols=92  Identities=17%  Similarity=0.161  Sum_probs=63.2

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc-C-cCC-----cc---------------Cc--------------------
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-R-RLL-----KH---------------FD--------------------  280 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~-~~l-----~~---------------~~--------------------  280 (535)
                      .|+|||||+.|+++|..+++.|.+|.++++ . .+.     |.               ++                    
T Consensus         6 DVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~ln~s   85 (618)
T PRK05192          6 DVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRMLNTS   85 (618)
T ss_pred             eEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceeecccC
Confidence            699999999999999999999999999988 3 321     00               00                    


Q ss_pred             --------------HHHHHHHHHhhhcC-CeEEcceEEEEEEEeCCCcE-EEEEecCCCCCceEEEcCEEEEccCC
Q psy14461        281 --------------QEMVRILLSSLTKA-GVSIQCCVIEKVISSFDGMK-GVRGFHPESKEPFADVFKTVVNAMEK  340 (535)
Q Consensus       281 --------------~~~~~~~~~~l~~~-gV~i~~~~v~~i~~~~~~~~-~v~~~~~~~G~~~~~~~D~vi~a~G~  340 (535)
                                    ..+...+.+.+++. |+++....+.++..+ ++++ .|.+   .+|.  .+.++.||+|+|.
T Consensus        86 kGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~q~~V~~Li~e-~grV~GV~t---~dG~--~I~Ak~VIlATGT  155 (618)
T PRK05192         86 KGPAVRALRAQADRKLYRAAMREILENQPNLDLFQGEVEDLIVE-NGRVVGVVT---QDGL--EFRAKAVVLTTGT  155 (618)
T ss_pred             CCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEec-CCEEEEEEE---CCCC--EEECCEEEEeeCc
Confidence                          00112233344433 788855567777654 3444 3555   3676  8999999999994

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=97.41  E-value=0.0016  Score=68.07  Aligned_cols=97  Identities=18%  Similarity=0.073  Sum_probs=67.2

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc----Cc------------------------------------
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH----FD------------------------------------  280 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~----~~------------------------------------  280 (535)
                      .+|+|||||+.|+-+|..|++.|.+|+++++ +.+...    +.                                    
T Consensus         8 ~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~g~~~   87 (388)
T PRK07494          8 TDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDATGRLI   87 (388)
T ss_pred             CCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCCCCCC
Confidence            4799999999999999999999999999998 432100    00                                    


Q ss_pred             -----------------------HHHHHHHHHhhhcCC-eEEcceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEE
Q psy14461        281 -----------------------QEMVRILLSSLTKAG-VSIQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVN  336 (535)
Q Consensus       281 -----------------------~~~~~~~~~~l~~~g-V~i~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~  336 (535)
                                             ..+.+.+.+.+.+.+ +...++++.+++.+ ++.+.|+++   +|+  ++.+|.||.
T Consensus        88 ~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~-~~~~~v~~~---~g~--~~~a~~vI~  161 (388)
T PRK07494         88 RAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNITRFGDEAESVRPR-EDEVTVTLA---DGT--TLSARLVVG  161 (388)
T ss_pred             CCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcEEECCeeEEEEEc-CCeEEEEEC---CCC--EEEEeEEEE
Confidence                                   011222333344443 33477888888765 455667663   566  799999999


Q ss_pred             ccCCCCCC
Q psy14461        337 AMEKKFDF  344 (535)
Q Consensus       337 a~G~~p~~  344 (535)
                      |.|.....
T Consensus       162 AdG~~S~v  169 (388)
T PRK07494        162 ADGRNSPV  169 (388)
T ss_pred             ecCCCchh
Confidence            99987643

>TIGR00292 thiazole biosynthesis enzyme

Probab=97.40  E-value=0.00024  Score=69.63  Aligned_cols=37  Identities=14%  Similarity=-0.043  Sum_probs=33.5

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccc
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLS  124 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~  124 (535)
                      .++++|||+|++|+.+|......+.+|+|+||+..++
T Consensus        21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~G   57 (254)
T TIGR00292        21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFG   57 (254)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence            4688999999999999999988899999999998664

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=97.39  E-value=0.0026  Score=66.54  Aligned_cols=99  Identities=18%  Similarity=0.150  Sum_probs=67.5

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEcC--cCC-----------ccC------------------------------
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYSR--RLL-----------KHF------------------------------  279 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~--~~l-----------~~~------------------------------  279 (535)
                      +|+|||||+.|+-+|..|++.|.+|+++++.  .+.           ..+                              
T Consensus         2 DVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (388)
T TIGR02023         2 DVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPIKVTIPS   81 (388)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCceeeeccCC
Confidence            5999999999999999999999999999872  110           000                              


Q ss_pred             --------c-HHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecC---CCCCceEEEcCEEEEccCCCCC
Q psy14461        280 --------D-QEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHP---ESKEPFADVFKTVVNAMEKKFD  343 (535)
Q Consensus       280 --------~-~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~---~~G~~~~~~~D~vi~a~G~~p~  343 (535)
                              + ..+.+.+.+...+.|+++ .. +++++..+ ++.+.+++.+.   .+|+..++.+|.||.|.|....
T Consensus        82 ~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~-~~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~  156 (388)
T TIGR02023        82 EDGYVGMVRREVFDSYLRERAQKAGAELIHG-LFLKLERD-RDGVTLTYRTPKKGAGGEKGSVEADVVIGADGANSP  156 (388)
T ss_pred             CCCceEeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEc-CCeEEEEEEeccccCCCcceEEEeCEEEECCCCCcH
Confidence                    0 012223444456679999 55 58888765 45566766420   1233457999999999997654

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PRK09897 hypothetical protein; Provisional

Probab=97.37  E-value=0.0024  Score=69.17  Aligned_cols=97  Identities=9%  Similarity=0.087  Sum_probs=65.3

Q ss_pred             CcEEEECCChHHHHHHHHHHhCC--CcEEEEEc-CcCCccC-----------------------cHHH------------
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLG--VPVTLVYS-RRLLKHF-----------------------DQEM------------  283 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g--~~Vtlv~~-~~~l~~~-----------------------~~~~------------  283 (535)
                      ++|+|||+|+.|+-+|..|.+.+  .+|+|+++ ..+....                       ++.+            
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~~   81 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHL   81 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHHH
Confidence            47999999999999999998765  48999987 5432100                       0000            


Q ss_pred             -------------------------HH---HHHHhhhcCC--eEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcC
Q psy14461        284 -------------------------VR---ILLSSLTKAG--VSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFK  332 (535)
Q Consensus       284 -------------------------~~---~~~~~l~~~g--V~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D  332 (535)
                                               .+   .+.+.+.+.|  +.+ .+++|++++.. ++.+.+++.  .+|.  .+.+|
T Consensus        82 ~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~-~~g~~V~t~--~gg~--~i~aD  156 (534)
T PRK09897         82 QRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQIT-NAGVMLATN--QDLP--SETFD  156 (534)
T ss_pred             HhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEe-CCEEEEEEC--CCCe--EEEcC
Confidence                                     01   1122233455  677 78899999876 455666653  1344  78999


Q ss_pred             EEEEccCCCCC
Q psy14461        333 TVVNAMEKKFD  343 (535)
Q Consensus       333 ~vi~a~G~~p~  343 (535)
                      .||+|+|..++
T Consensus       157 ~VVLAtGh~~p  167 (534)
T PRK09897        157 LAVIATGHVWP  167 (534)
T ss_pred             EEEECCCCCCC
Confidence            99999997554

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.37  E-value=0.0013  Score=70.46  Aligned_cols=32  Identities=22%  Similarity=0.201  Sum_probs=29.8

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEcC
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYSR  273 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~  273 (535)
                      -+|+|||+|+.|+.+|..++++|.+|+++++.
T Consensus         5 ~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~   36 (466)
T PRK07818          5 YDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK   36 (466)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence            36999999999999999999999999999973

>PRK13748 putative mercuric reductase; Provisional

Probab=97.36  E-value=0.0021  Score=70.73  Aligned_cols=99  Identities=15%  Similarity=0.033  Sum_probs=63.8

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEcCcCC---------------------------c---c-------Cc-HHH
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLL---------------------------K---H-------FD-QEM  283 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~l---------------------------~---~-------~~-~~~  283 (535)
                      -.|+|||+|+.|+.+|..+++.|.+|.++++..+.                           +   .       .+ ..+
T Consensus        99 ~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  178 (561)
T PRK13748         99 LHVAVIGSGGAAMAAALKAVEQGARVTLIERGTIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDRSRL  178 (561)
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCeEEEEecCcceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCCccCHHHH
Confidence            47999999999999999999999999999973210                           0   0       00 111


Q ss_pred             HHH------------HHHhhhcC-CeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCC
Q psy14461        284 VRI------------LLSSLTKA-GVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAAL  347 (535)
Q Consensus       284 ~~~------------~~~~l~~~-gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l  347 (535)
                      .+.            ....+++. +|++ .+ ++..++   ...+.|.+.   +|+..++.+|.+|+|||.+|....+
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~---~~~~~v~~~---~g~~~~~~~d~lviAtGs~p~~p~i  249 (561)
T PRK13748        179 LAQQQARVDELRHAKYEGILDGNPAITVLHG-EARFKD---DQTLIVRLN---DGGERVVAFDRCLIATGASPAVPPI  249 (561)
T ss_pred             HHHHHHHHHHHhcccHHHHHhccCCeEEEEE-EEEEec---CCEEEEEeC---CCceEEEEcCEEEEcCCCCCCCCCC
Confidence            111            11223333 6777 44 344332   344555552   5544579999999999999976543

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=97.35  E-value=0.0091  Score=62.04  Aligned_cols=54  Identities=9%  Similarity=0.091  Sum_probs=41.3

Q ss_pred             HHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCC
Q psy14461        281 QEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKK  341 (535)
Q Consensus       281 ~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~  341 (535)
                      ..+.+.+.+.+++.|+++ .++.|++++.+ ++.+.|.+   .+|   ++.+|.||+|+|..
T Consensus       145 ~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~-~~~~~v~~---~~~---~i~a~~vV~aaG~~  199 (380)
T TIGR01377       145 EKALRALQELAEAHGATVRDGTKVVEIEPT-ELLVTVKT---TKG---SYQANKLVVTAGAW  199 (380)
T ss_pred             HHHHHHHHHHHHHcCCEEECCCeEEEEEec-CCeEEEEe---CCC---EEEeCEEEEecCcc
Confidence            455666777778889999 99999999875 45556655   234   68999999999964

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=97.34  E-value=0.0047  Score=57.74  Aligned_cols=165  Identities=18%  Similarity=0.234  Sum_probs=95.5

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc-------C-------------------------------cH
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH-------F-------------------------------DQ  281 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~-------~-------------------------------~~  281 (535)
                      ...|+|||+|++|+-+|.+|++.|.+|.++++ -.+-..       |                               ..
T Consensus        30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~ds~  109 (262)
T COG1635          30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVADSA  109 (262)
T ss_pred             hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEecHH
Confidence            35799999999999999999999999999998 443211       0                               01


Q ss_pred             HHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEE-EEEecC---CCC---CceEEEcCEEEEccCCCCCCCCCCccc--
Q psy14461        282 EMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKG-VRGFHP---ESK---EPFADVFKTVVNAMEKKFDFAALNLHH--  351 (535)
Q Consensus       282 ~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~-v~~~~~---~~G---~~~~~~~D~vi~a~G~~p~~~~l~l~~--  351 (535)
                      ++...+....-+.|.++ ....+.++.-.++.++. |.++.+   ..+   ....+++++|+-|||.....-.+-.+.  
T Consensus       110 e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda~v~~~~~kr~~  189 (262)
T COG1635         110 EFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDAEVVSFLAKRIP  189 (262)
T ss_pred             HHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCchHHHHHHHHhcc
Confidence            22223333344568899 88999987655332332 333211   011   124789999999999764432210011  


Q ss_pred             -cCeeecCCCceEcC--C-----CCCcCCCCEEEeCCcCC---CCCCcHHH--H-HHHHHHHHHHHhC
Q psy14461        352 -IGVDIKKKSYVVCN--E-----KDQTSVGNIFAVGGIVH---GKPNNASM--A-AISARLIIERLYG  405 (535)
Q Consensus       352 -~gl~~~~~G~i~vd--~-----~~~T~~~~IyA~GD~~~---~~~~~~~~--A-~~~g~~aa~~i~g  405 (535)
                       +++++-..+..+.+  |     ..+--.||+|++|=+++   |.|...+.  + .-.|+.||+.++.
T Consensus       190 ~l~~~~~Ge~~mw~e~~E~lvV~~T~eV~pgL~vaGMa~~av~G~pRMGPiFGgMllSGkkaAe~i~e  257 (262)
T COG1635         190 ELGIEVPGEKSMWAERGEDLVVENTGEVYPGLYVAGMAVNAVHGLPRMGPIFGGMLLSGKKAAEEILE  257 (262)
T ss_pred             ccccccCCCcchhhhHHHHHHHhccccccCCeEeehhhHHhhcCCcccCchhhhhhhchHHHHHHHHH
Confidence             11211111112221  1     12225799999997764   44443332  2 4467888877654

>PRK06996 hypothetical protein; Provisional

Probab=97.33  E-value=0.0018  Score=67.91  Aligned_cols=98  Identities=9%  Similarity=-0.012  Sum_probs=70.9

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCC----CcEEEEEc-CcCCcc------------------C------------------
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLG----VPVTLVYS-RRLLKH------------------F------------------  279 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g----~~Vtlv~~-~~~l~~------------------~------------------  279 (535)
                      ..+|+|||||++|+-+|..|++.|    .+|+++++ +..-+.                  +                  
T Consensus        11 ~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~   90 (398)
T PRK06996         11 DFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIHVSQR   90 (398)
T ss_pred             CCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEEEecC
Confidence            357999999999999999999987    46999987 421000                  0                  


Q ss_pred             -----------------------cHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEE
Q psy14461        280 -----------------------DQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVV  335 (535)
Q Consensus       280 -----------------------~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi  335 (535)
                                             -.++.+.+.+.+++.|+++ .++++++++.+ ++.+++++.+ .+| ++++.+|+||
T Consensus        91 ~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~-~~~v~v~~~~-~~g-~~~i~a~lvI  167 (398)
T PRK06996         91 GHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQD-ADGVTLALGT-PQG-ARTLRARIAV  167 (398)
T ss_pred             CCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeec-CCeEEEEECC-CCc-ceEEeeeEEE
Confidence                                   0234455666677788999 99999999765 4556777642 122 1379999999


Q ss_pred             EccCCC
Q psy14461        336 NAMEKK  341 (535)
Q Consensus       336 ~a~G~~  341 (535)
                      -|.|..
T Consensus       168 gADG~~  173 (398)
T PRK06996        168 QAEGGL  173 (398)
T ss_pred             ECCCCC
Confidence            999953

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.32  E-value=0.0025  Score=66.60  Aligned_cols=97  Identities=22%  Similarity=0.260  Sum_probs=68.5

Q ss_pred             CcEEEECCChHHHHHHHHHHhC---CCcEEEEEc-CcC---Ccc-------Cc-------------H-------------
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFL---GVPVTLVYS-RRL---LKH-------FD-------------Q-------------  281 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~---g~~Vtlv~~-~~~---l~~-------~~-------------~-------------  281 (535)
                      -+|+|||+|+.|+-+|..|++.   |.+|+|+++ ...   .+.       +.             +             
T Consensus         4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~   83 (395)
T PRK05732          4 MDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPITHIH   83 (395)
T ss_pred             CCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCccEEE
Confidence            4699999999999999999998   999999998 311   010       00             0             


Q ss_pred             -----------------------------HHHHHHHHhhhc-CCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEE
Q psy14461        282 -----------------------------EMVRILLSSLTK-AGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADV  330 (535)
Q Consensus       282 -----------------------------~~~~~~~~~l~~-~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~  330 (535)
                                                   ++.+.+.+.+.+ .|+++ .+++++++... ++.+.|++.   +|.  ++.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~-~~~~~v~~~---~g~--~~~  157 (395)
T PRK05732         84 VSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERT-QGSVRVTLD---DGE--TLT  157 (395)
T ss_pred             EecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEc-CCeEEEEEC---CCC--EEE
Confidence                                         011122333333 47899 89999998765 455667663   565  789


Q ss_pred             cCEEEEccCCCCCC
Q psy14461        331 FKTVVNAMEKKFDF  344 (535)
Q Consensus       331 ~D~vi~a~G~~p~~  344 (535)
                      +|.||.|.|.....
T Consensus       158 a~~vI~AdG~~S~v  171 (395)
T PRK05732        158 GRLLVAADGSHSAL  171 (395)
T ss_pred             eCEEEEecCCChhh
Confidence            99999999987653

>PRK06847 hypothetical protein; Provisional

Probab=97.31  E-value=0.0021  Score=66.76  Aligned_cols=34  Identities=12%  Similarity=-0.070  Sum_probs=31.2

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSH  122 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~  122 (535)
                      .+|+|||+|++|+.+|+.+...+.+|+|+|+.+.
T Consensus         5 ~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~   38 (375)
T PRK06847          5 KKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE   38 (375)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            5789999999999999998888999999999874

>KOG2495|consensus

Probab=97.30  E-value=0.00095  Score=67.97  Aligned_cols=107  Identities=17%  Similarity=0.140  Sum_probs=76.2

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC--ccC---------cHHHHHHHHHhhhcC--CeEEcceEEEE
Q psy14461        240 WPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL--KHF---------DQEMVRILLSSLTKA--GVSIQCCVIEK  305 (535)
Q Consensus       240 ~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l--~~~---------~~~~~~~~~~~l~~~--gV~i~~~~v~~  305 (535)
                      ..|+|||+|+|..|+-+...|-..-.+|++|.+ +.++  |.+         -+.+.+.+....+..  ++++....-..
T Consensus        54 kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r~k~~~~~y~eAec~~  133 (491)
T KOG2495|consen   54 KKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIARKKNGEVKYLEAECTK  133 (491)
T ss_pred             CCceEEEEcCchHHHHHHHhccccccceEEeccccceEEeeccCCccccceeehhhhhhHHHHhhccCCCceEEecccEe
Confidence            357999999999999988888777789999998 6654  333         356667777766655  45556667777


Q ss_pred             EEEeCCCcEEEEEecCC-CCCceEEEcCEEEEccCCCCCCCCC
Q psy14461        306 VISSFDGMKGVRGFHPE-SKEPFADVFKTVVNAMEKKFDFAAL  347 (535)
Q Consensus       306 i~~~~~~~~~v~~~~~~-~G~~~~~~~D~vi~a~G~~p~~~~l  347 (535)
                      |+++ ...+.+.....+ ...+..+.+|.+++|+|..||+...
T Consensus       134 iDp~-~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TFgi  175 (491)
T KOG2495|consen  134 IDPD-NKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTFGI  175 (491)
T ss_pred             eccc-ccEEEEeeeccCCCcceeeecccEEEEeccCCCCCCCC
Confidence            7765 344444332111 2455789999999999999998654

>TIGR02028 ChlP geranylgeranyl reductase

Probab=97.29  E-value=0.0036  Score=65.71  Aligned_cols=100  Identities=18%  Similarity=0.171  Sum_probs=64.4

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCc------------cC--c---------------------------
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLK------------HF--D---------------------------  280 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~------------~~--~---------------------------  280 (535)
                      +|+|||||+.|+-+|..|++.|.+|.++++ ..+..            .+  .                           
T Consensus         2 ~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg~~i~~~~l~~~g~~~~~~~~~i~~~~~~~p~~~~~~~~~~~   81 (398)
T TIGR02028         2 RVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCGGAIPLCMVDEFALPRDIIDRRVTKMKMISPSNIAVDIGRTL   81 (398)
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhhHhhccCchhHHHhhhceeEEecCCceEEEeccCC
Confidence            699999999999999999999999999998 43210            00  0                           


Q ss_pred             -----------HHHHHHHHHhhhcCCeEE-cceEEEEEEEe--CCCcEEEEEecCC----CCCceEEEcCEEEEccCCCC
Q psy14461        281 -----------QEMVRILLSSLTKAGVSI-QCCVIEKVISS--FDGMKGVRGFHPE----SKEPFADVFKTVVNAMEKKF  342 (535)
Q Consensus       281 -----------~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~--~~~~~~v~~~~~~----~G~~~~~~~D~vi~a~G~~p  342 (535)
                                 ..+.+.+.+...+.|+++ .++ +..+...  .++...|++....    .|++.++.+++||.|.|..+
T Consensus        82 ~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S  160 (398)
T TIGR02028        82 KEHEYIGMLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANS  160 (398)
T ss_pred             CCCCceeeeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcch
Confidence                       011122334455678888 664 6666421  1233455543211    15445799999999999755


Q ss_pred             C
Q psy14461        343 D  343 (535)
Q Consensus       343 ~  343 (535)
                      .
T Consensus       161 ~  161 (398)
T TIGR02028       161 R  161 (398)
T ss_pred             H
Confidence            3

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=97.28  E-value=0.0025  Score=67.20  Aligned_cols=95  Identities=15%  Similarity=0.062  Sum_probs=65.4

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-CcEEEEEc-CcCCcc-----Cc-------------HHHH------------------
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLG-VPVTLVYS-RRLLKH-----FD-------------QEMV------------------  284 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g-~~Vtlv~~-~~~l~~-----~~-------------~~~~------------------  284 (535)
                      +|+|||||..|+-+|..|++.| .+|+|+++ +.+.+.     +.             +.+.                  
T Consensus         2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~   81 (414)
T TIGR03219         2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEWR   81 (414)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEEE
Confidence            6999999999999999999998 59999998 543210     00             0000                  


Q ss_pred             -----------------------HHHHHhhhc--CCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEcc
Q psy14461        285 -----------------------RILLSSLTK--AGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAM  338 (535)
Q Consensus       285 -----------------------~~~~~~l~~--~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~  338 (535)
                                             ..+.+.|.+  .++.+ .++++++++.+ ++.+.|.+.   +|+  ++++|.||.|.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~v~~~~~v~~i~~~-~~~~~v~~~---~g~--~~~ad~vVgAD  155 (414)
T TIGR03219        82 NGSDASYLGATIAPGVGQSSVHRADFLDALLKHLPEGIASFGKRATQIEEQ-AEEVQVLFT---DGT--EYRCDLLIGAD  155 (414)
T ss_pred             ecCccceeeeeccccCCcccCCHHHHHHHHHHhCCCceEEcCCEEEEEEec-CCcEEEEEc---CCC--EEEeeEEEECC
Confidence                                   001111111  13457 88899999875 455777774   676  79999999999


Q ss_pred             CCCCC
Q psy14461        339 EKKFD  343 (535)
Q Consensus       339 G~~p~  343 (535)
                      |....
T Consensus       156 G~~S~  160 (414)
T TIGR03219       156 GIKSA  160 (414)
T ss_pred             CccHH
Confidence            97754

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=97.28  E-value=0.0021  Score=68.08  Aligned_cols=38  Identities=13%  Similarity=-0.023  Sum_probs=33.8

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccc
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSF  125 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~  125 (535)
                      .++|+|||+||+|+.+|+.+...+.+|+|+||.+..+.
T Consensus         5 ~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~   42 (428)
T PRK10157          5 IFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGA   42 (428)
T ss_pred             cCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCC
Confidence            36899999999999999999999999999999876543

>PRK11445 putative oxidoreductase; Provisional

Probab=97.27  E-value=0.0038  Score=64.36  Aligned_cols=97  Identities=14%  Similarity=-0.012  Sum_probs=67.8

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC--c-------cCcHH------------------------------
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL--K-------HFDQE------------------------------  282 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l--~-------~~~~~------------------------------  282 (535)
                      +|+|||+|+.|+-+|..|++. .+|+++++ +...  +       .+.+.                              
T Consensus         3 dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~~~   81 (351)
T PRK11445          3 DVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVKTIDL   81 (351)
T ss_pred             eEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceeeEecc
Confidence            599999999999999999999 99999998 5321  0       00000                              


Q ss_pred             -------------------HHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCC
Q psy14461        283 -------------------MVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKF  342 (535)
Q Consensus       283 -------------------~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p  342 (535)
                                         +.+.+.+ ..+.|+++ .++.+++++.. ++.+.|.+.  .+|+..++.+|.||.|.|...
T Consensus        82 ~~~~~~~~~~~~~~i~R~~~~~~L~~-~~~~gv~v~~~~~v~~i~~~-~~~~~v~~~--~~g~~~~i~a~~vV~AdG~~S  157 (351)
T PRK11445         82 ANSLTRNYQRSYINIDRHKFDLWLKS-LIPASVEVYHNSLCRKIWRE-DDGYHVIFR--ADGWEQHITARYLVGADGANS  157 (351)
T ss_pred             cccchhhcCCCcccccHHHHHHHHHH-HHhcCCEEEcCCEEEEEEEc-CCEEEEEEe--cCCcEEEEEeCEEEECCCCCc
Confidence                               0011111 12467899 99999999876 455666653  256545789999999999875


Q ss_pred             CC
Q psy14461        343 DF  344 (535)
Q Consensus       343 ~~  344 (535)
                      ..
T Consensus       158 ~v  159 (351)
T PRK11445        158 MV  159 (351)
T ss_pred             HH
Confidence            43

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=97.27  E-value=0.0029  Score=73.93  Aligned_cols=103  Identities=17%  Similarity=0.063  Sum_probs=69.0

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccC-----------cHHHHHHHHHhhhcC-CeEE-cceEEEEE
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHF-----------DQEMVRILLSSLTKA-GVSI-QCCVIEKV  306 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~-----------~~~~~~~~~~~l~~~-gV~i-~~~~v~~i  306 (535)
                      ..+|+|||||+.|+.+|..+++.|.+|++++. +.+...+           ..++...+.+.+++. +|++ .+++|..+
T Consensus       163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~v~v~~~t~V~~i  242 (985)
T TIGR01372       163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTAMPEVTLLPRTTAFGY  242 (985)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhcCCCcEEEcCCEEEEE
Confidence            46799999999999999999999999999998 5543211           123334455556555 5999 99999887


Q ss_pred             EEeCCCcEE-EE-Ee----cCCCC----CceEEEcCEEEEccCCCCCCC
Q psy14461        307 ISSFDGMKG-VR-GF----HPESK----EPFADVFKTVVNAMEKKFDFA  345 (535)
Q Consensus       307 ~~~~~~~~~-v~-~~----~~~~G----~~~~~~~D~vi~a~G~~p~~~  345 (535)
                      ...  +.+. +. ..    ...++    ...++.+|.||+|||..|...
T Consensus       243 ~~~--~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~~  289 (985)
T TIGR01372       243 YDH--NTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERPL  289 (985)
T ss_pred             ecC--CeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcCC
Confidence            531  2211 11 00    00011    112689999999999987654

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=97.27  E-value=0.0031  Score=66.17  Aligned_cols=96  Identities=17%  Similarity=0.086  Sum_probs=70.0

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCc------------------cCc----------------------
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLK------------------HFD----------------------  280 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~------------------~~~----------------------  280 (535)
                      -.|+|||+|+.|.-+|..|++.|.+|.++++ +.+..                  ...                      
T Consensus         4 ~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~~~   83 (396)
T COG0644           4 YDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVAIE   83 (396)
T ss_pred             eeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceEEe
Confidence            3699999999999999999999999999988 53311                  011                      


Q ss_pred             -----------HHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCC
Q psy14461        281 -----------QEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKF  342 (535)
Q Consensus       281 -----------~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p  342 (535)
                                 ..+-+.+.+..++.|+++ .+++++.+..++ +.+.+...   .+. .++.++.||.|.|...
T Consensus        84 ~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~-~~~~~~~~---~~~-~e~~a~~vI~AdG~~s  152 (396)
T COG0644          84 VPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIRED-DGVVVGVR---AGD-DEVRAKVVIDADGVNS  152 (396)
T ss_pred             cCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeC-CcEEEEEE---cCC-EEEEcCEEEECCCcch
Confidence                       122234555667789999 999999998773 44443332   222 4899999999999543

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=97.25  E-value=0.0014  Score=67.45  Aligned_cols=34  Identities=12%  Similarity=-0.015  Sum_probs=27.0

Q ss_pred             EEEeeCCccHHHHHHHHHhhCCCeEEEE-ecCCcc
Q psy14461         90 YLDRIGDEGILLEEELKRQTNQRRDELQ-ERGSHL  123 (535)
Q Consensus        90 ~v~iiG~G~aG~~~al~~~~~~~~V~li-e~~~~~  123 (535)
                      ||+|||+|.||+.||+.....+.+|+|+ .+.+.+
T Consensus         1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i   35 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTI   35 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGT
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeeccccc
Confidence            6899999999999999999999999999 444433

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>KOG1336|consensus

Probab=97.25  E-value=0.0012  Score=68.24  Aligned_cols=97  Identities=14%  Similarity=0.112  Sum_probs=73.8

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCC--cEEEEEcCcCCccCc-----------HHHHHHHHHhhhcCCeEE-cceEEEEE
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLGV--PVTLVYSRRLLKHFD-----------QEMVRILLSSLTKAGVSI-QCCVIEKV  306 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g~--~Vtlv~~~~~l~~~~-----------~~~~~~~~~~l~~~gV~i-~~~~v~~i  306 (535)
                      .++++|||+|+.|.-++..++..|-  +++++.++..+|...           .....+..+.+++.||++ .++.++.+
T Consensus        74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~pydr~~Ls~~~~~~~~~~a~r~~e~Yke~gIe~~~~t~v~~~  153 (478)
T KOG1336|consen   74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLPYDRARLSKFLLTVGEGLAKRTPEFYKEKGIELILGTSVVKA  153 (478)
T ss_pred             cceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCcccchhcccceeeccccccccChhhHhhcCceEEEcceeEEe
Confidence            5789999999999999999998874  788887644444322           233344455678899999 99999999


Q ss_pred             EEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCC
Q psy14461        307 ISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFA  345 (535)
Q Consensus       307 ~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~  345 (535)
                      +-.   ..+|.+   .+|+  .+++|.+++|||..|+..
T Consensus       154 D~~---~K~l~~---~~Ge--~~kys~LilATGs~~~~l  184 (478)
T KOG1336|consen  154 DLA---SKTLVL---GNGE--TLKYSKLIIATGSSAKTL  184 (478)
T ss_pred             ecc---ccEEEe---CCCc--eeecceEEEeecCccccC
Confidence            864   245666   4788  899999999999966653

>PRK10015 oxidoreductase; Provisional

Probab=97.24  E-value=0.0024  Score=67.74  Aligned_cols=37  Identities=14%  Similarity=-0.065  Sum_probs=33.5

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSF  125 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~  125 (535)
                      ++|+|||+||+|+++|+.+...+.+|+|+||++.++.
T Consensus         6 ~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~   42 (429)
T PRK10015          6 FDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGC   42 (429)
T ss_pred             cCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCc
Confidence            6899999999999999999999999999999886543

>PRK14727 putative mercuric reductase; Provisional

Probab=97.23  E-value=0.0038  Score=67.26  Aligned_cols=36  Identities=17%  Similarity=0.130  Sum_probs=32.2

Q ss_pred             ccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        237 LGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       237 ~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      ....+-+++|||+|+.|+.+|..++++|.+|+++++
T Consensus        12 ~~~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~   47 (479)
T PRK14727         12 RSKLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEG   47 (479)
T ss_pred             cCCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEc
Confidence            344556899999999999999999999999999987

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=97.22  E-value=0.0032  Score=65.83  Aligned_cols=32  Identities=16%  Similarity=-0.024  Sum_probs=29.9

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecC
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERG  120 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~  120 (535)
                      ++|+|||+||+|+.+|+.+...+.+|+|+|+.
T Consensus         1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~   32 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLARAGIETILLERA   32 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence            47899999999999999988889999999997

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=97.22  E-value=0.0035  Score=65.26  Aligned_cols=95  Identities=15%  Similarity=0.159  Sum_probs=68.3

Q ss_pred             cEEEECCChHHHHHHHHH--HhCCCcEEEEEc-CcC-Ccc------Cc--------------------------------
Q psy14461        243 KTLVLGGSLMAVEIAATL--NFLGVPVTLVYS-RRL-LKH------FD--------------------------------  280 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l--~~~g~~Vtlv~~-~~~-l~~------~~--------------------------------  280 (535)
                      .|+|||+|+.|+-+|..|  ++.|.+|.++++ +.. .+.      +.                                
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~   80 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYP   80 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccc
Confidence            489999999999999999  778999999987 433 110      00                                


Q ss_pred             ------HHHHHHHHHhhhcCCeEEcceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCC
Q psy14461        281 ------QEMVRILLSSLTKAGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFD  343 (535)
Q Consensus       281 ------~~~~~~~~~~l~~~gV~i~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~  343 (535)
                            .++.+.+.+.+.+.|+.+.+..|++|+.. ++...|++   .+|+  ++.++.||-|.|..+.
T Consensus        81 Y~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~-~~~~~v~~---~~g~--~i~a~~VvDa~g~~~~  143 (374)
T PF05834_consen   81 YCMIDRADFYEFLLERAAAGGVIRLNARVTSIEET-GDGVLVVL---ADGR--TIRARVVVDARGPSSP  143 (374)
T ss_pred             eEEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEec-CceEEEEE---CCCC--EEEeeEEEECCCcccc
Confidence                  23334455555645554488899999876 34455666   3787  8999999999996654

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=97.20  E-value=0.0036  Score=66.62  Aligned_cols=98  Identities=14%  Similarity=0.124  Sum_probs=69.5

Q ss_pred             cEEEECCChHHHHHHHHHHh----CCCcEEEEEc-CcCCcc-----------------Cc--------------------
Q psy14461        243 KTLVLGGSLMAVEIAATLNF----LGVPVTLVYS-RRLLKH-----------------FD--------------------  280 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~----~g~~Vtlv~~-~~~l~~-----------------~~--------------------  280 (535)
                      +|+|||||++|+-+|..|++    .|.+|+++++ +.+...                 +.                    
T Consensus         2 DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~~   81 (437)
T TIGR01989         2 DVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSDR   81 (437)
T ss_pred             cEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhhc
Confidence            59999999999999999998    7999999997 421100                 00                    


Q ss_pred             -----------------------------------HHHHHHHHHhhhcC---CeEE-cceEEEEEEEe------CCCcEE
Q psy14461        281 -----------------------------------QEMVRILLSSLTKA---GVSI-QCCVIEKVISS------FDGMKG  315 (535)
Q Consensus       281 -----------------------------------~~~~~~~~~~l~~~---gV~i-~~~~v~~i~~~------~~~~~~  315 (535)
                                                         ..+.+.+.+.+.+.   ++++ .++++++++..      .+..++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~  161 (437)
T TIGR01989        82 IQPFGRMQVWDGCSLALIRFDRDNGKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVH  161 (437)
T ss_pred             CCceeeEEEecCCCCceEEeecCCCCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceE
Confidence                                               11222333444444   4899 99999999642      124466


Q ss_pred             EEEecCCCCCceEEEcCEEEEccCCCCCCC
Q psy14461        316 VRGFHPESKEPFADVFKTVVNAMEKKFDFA  345 (535)
Q Consensus       316 v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~  345 (535)
                      |++.   +|+  ++.+|+||-|-|......
T Consensus       162 v~~~---~g~--~i~a~llVgADG~~S~vR  186 (437)
T TIGR01989       162 ITLS---DGQ--VLYTKLLIGADGSNSNVR  186 (437)
T ss_pred             EEEc---CCC--EEEeeEEEEecCCCChhH
Confidence            7763   677  899999999999887654

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=97.19  E-value=0.0031  Score=67.58  Aligned_cols=93  Identities=19%  Similarity=0.114  Sum_probs=64.3

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRFC  168 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  168 (535)
                      .+++|||+|..|+..|......+.+|+|+++.+.+      +++.                      +. ++..      
T Consensus       171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~------l~~~----------------------~~-~~~~------  215 (461)
T TIGR01350       171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRI------LPGE----------------------DA-EVSK------  215 (461)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCC------CCCC----------------------CH-HHHH------
Confidence            46899999999999998777778899999998754      1211                      10 1111      


Q ss_pred             HHHHHHHHHHHHhcCcEEEEeE-EEEe--cCCEEEEc---e--eEEEcceEEEeeCceecC
Q psy14461        169 IRAKNDSMRELKALGIDIVRTA-AAFT--NPHTIKLS---N--RSVTGFNFLLAVERRCLP  221 (535)
Q Consensus       169 ~~~~~~~~~~~~~~gV~~~~g~-~~~~--~~~~v~~~---~--~~~~~d~lViATGs~p~~  221 (535)
                           .+.+.+++.||+++.++ +..+  ++..+.+.   +  .++.+|.||+|+|.+|..
T Consensus       216 -----~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~  271 (461)
T TIGR01350       216 -----VVAKALKKKGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKPNT  271 (461)
T ss_pred             -----HHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCcccC
Confidence                 12355677899999874 3322  23444442   2  479999999999999976

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PLN02546 glutathione reductase

Probab=97.17  E-value=0.0028  Score=69.24  Aligned_cols=30  Identities=10%  Similarity=0.125  Sum_probs=28.7

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      .|+|||+|+.|+.+|..++++|.+|.++++
T Consensus        81 DvvVIG~GpaG~~aA~~aa~~G~~V~liE~  110 (558)
T PLN02546         81 DLFTIGAGSGGVRASRFASNFGASAAVCEL  110 (558)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence            599999999999999999999999999993

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=97.16  E-value=0.0006  Score=72.28  Aligned_cols=38  Identities=13%  Similarity=0.064  Sum_probs=30.8

Q ss_pred             EEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccc
Q psy14461         90 YLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRK  127 (535)
Q Consensus        90 ~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~  127 (535)
                      ||+|+|+|++|+.||+.....+.+|+|+|+.+.+++..
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~   38 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMA   38 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGG
T ss_pred             CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcc
Confidence            68999999999999999999999999999999876544

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=97.16  E-value=0.019  Score=61.83  Aligned_cols=63  Identities=14%  Similarity=0.019  Sum_probs=45.6

Q ss_pred             cHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCC
Q psy14461        280 DQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKF  342 (535)
Q Consensus       280 ~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p  342 (535)
                      ...+...+.+.+++.|+++ .+++|++++..+++.+.+++.++.+|+..++.+|.||+|.|.-.
T Consensus       177 p~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s  240 (483)
T TIGR01320       177 FGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGA  240 (483)
T ss_pred             HHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcch
Confidence            3566777777888889999 99999999875334556654332345434689999999999643

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=97.15  E-value=0.0076  Score=64.24  Aligned_cols=105  Identities=14%  Similarity=0.082  Sum_probs=67.4

Q ss_pred             cCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCc------------c--CcH---------------------
Q psy14461        238 GAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLK------------H--FDQ---------------------  281 (535)
Q Consensus       238 ~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~------------~--~~~---------------------  281 (535)
                      ....-+|+|||||+.|+-+|..|++.|.+|.++++ .....            .  +++                     
T Consensus        36 ~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~~~l~~lgl~~~~~~~~i~~~~~~~p~~~~v~  115 (450)
T PLN00093         36 SGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVD  115 (450)
T ss_pred             CCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhHHhhhcCcHHHHHHHhhhheEecCCceEEE
Confidence            33445899999999999999999999999999997 32100            0  000                     


Q ss_pred             -----------------HHHHHHHHhhhcCCeEE-cceEEEEEEEeC--CCcEEEEEecC----CCCCceEEEcCEEEEc
Q psy14461        282 -----------------EMVRILLSSLTKAGVSI-QCCVIEKVISSF--DGMKGVRGFHP----ESKEPFADVFKTVVNA  337 (535)
Q Consensus       282 -----------------~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~--~~~~~v~~~~~----~~G~~~~~~~D~vi~a  337 (535)
                                       .+.+.+.+...+.|+++ .+ .+.+++...  ++.+.|++.+.    .+|+..++.+|+||-|
T Consensus       116 ~~~~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIgA  194 (450)
T PLN00093        116 IGKTLKPHEYIGMVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAVIGA  194 (450)
T ss_pred             ecccCCCCCeEEEecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEeccccccCCCccEEEeCEEEEc
Confidence                             11123344445678888 65 466665321  23455665421    0144458999999999


Q ss_pred             cCCCCC
Q psy14461        338 MEKKFD  343 (535)
Q Consensus       338 ~G~~p~  343 (535)
                      .|....
T Consensus       195 DG~~S~  200 (450)
T PLN00093        195 DGANSR  200 (450)
T ss_pred             CCcchH
Confidence            997543

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=97.12  E-value=0.0005  Score=72.75  Aligned_cols=115  Identities=14%  Similarity=0.048  Sum_probs=81.8

Q ss_pred             eEEEcceEEEeeCceecC--CCCCCceechhhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCc---
Q psy14461        204 RSVTGFNFLLAVERRCLP--EPRNSALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLK---  277 (535)
Q Consensus       204 ~~~~~d~lViATGs~p~~--~i~G~~v~~~~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~---  277 (535)
                      ..+.++.|..+.|.....  .+++.        ..-...+++|+|||+|+.|+.+|..|++.|.+||++++ +.+..   
T Consensus        92 ~~v~i~~le~~i~d~~~~~g~i~~~--------~~~~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~  163 (457)
T COG0493          92 LPVNIGALERAIGDKADREGWIPGE--------LPGSRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLL  163 (457)
T ss_pred             CchhhhhHHHHHhhHHHHhCCCCCC--------CCCCCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEE
Confidence            556777777777765443  24430        11123358999999999999999999999999999998 65422   


Q ss_pred             ------cCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCC
Q psy14461        278 ------HFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKK  341 (535)
Q Consensus       278 ------~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~  341 (535)
                            .++.++.+...+.|++.|++| .++++-.         .++++    .  ..-++|+|++++|..
T Consensus       164 yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~---------~it~~----~--L~~e~Dav~l~~G~~  219 (457)
T COG0493         164 YGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGR---------DITLE----E--LLKEYDAVFLATGAG  219 (457)
T ss_pred             ecCchhhccchHHHHHHHHHHHcCeEEEEcceECC---------cCCHH----H--HHHhhCEEEEecccc
Confidence                  346788889999999999999 8887631         12221    0  123459999999964

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=97.12  E-value=0.0013  Score=72.29  Aligned_cols=88  Identities=18%  Similarity=0.264  Sum_probs=62.8

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCc---------cCcHHHHHHHHHhhhcCCeEE-cceEE-EEEE
Q psy14461        240 WPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLK---------HFDQEMVRILLSSLTKAGVSI-QCCVI-EKVI  307 (535)
Q Consensus       240 ~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~---------~~~~~~~~~~~~~l~~~gV~i-~~~~v-~~i~  307 (535)
                      .+++|+|||+|++|+.+|..|++.|.+|+++++ +.+..         .++.++...-.+.+++.|+++ .+..+ ..+.
T Consensus       136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~~~~~  215 (564)
T PRK12771        136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVGEDIT  215 (564)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEECCcCC
Confidence            468999999999999999999999999999997 54421         234455555455667789998 77655 2221


Q ss_pred             EeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCC
Q psy14461        308 SSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFD  343 (535)
Q Consensus       308 ~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~  343 (535)
                      ..              ..  ...+|.|++|+|..+.
T Consensus       216 ~~--------------~~--~~~~D~Vi~AtG~~~~  235 (564)
T PRK12771        216 LE--------------QL--EGEFDAVFVAIGAQLG  235 (564)
T ss_pred             HH--------------HH--HhhCCEEEEeeCCCCC
Confidence            10              00  1247999999998754

>PLN02697 lycopene epsilon cyclase

Probab=97.11  E-value=0.0021  Score=69.47  Aligned_cols=34  Identities=18%  Similarity=-0.097  Sum_probs=30.9

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCC
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGS  121 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~  121 (535)
                      .++|+|||+|++|+++|......+.+|+|+|+..
T Consensus       108 ~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~  141 (529)
T PLN02697        108 TLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL  141 (529)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCCcEEEecCcc
Confidence            4799999999999999998888899999999864

>TIGR02028 ChlP geranylgeranyl reductase

Probab=97.11  E-value=0.0035  Score=65.80  Aligned_cols=34  Identities=15%  Similarity=0.038  Sum_probs=30.9

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSH  122 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~  122 (535)
                      ++|+|||+||+|.++|+.+...+.+|+|+|+...
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~   34 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPD   34 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCC
Confidence            3689999999999999999899999999999764

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=97.11  E-value=0.0012  Score=74.77  Aligned_cols=34  Identities=21%  Similarity=0.034  Sum_probs=31.9

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        239 AWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       239 ~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      ..+++|+|||+|+.|+.+|..|++.|.+||++++
T Consensus       381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~  414 (1028)
T PRK06567        381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDG  414 (1028)
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcc
Confidence            3578999999999999999999999999999997

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=97.10  E-value=0.0075  Score=63.63  Aligned_cols=58  Identities=26%  Similarity=0.206  Sum_probs=40.2

Q ss_pred             HHHHHhhhcCCeEE-cceEEEEEEEeCCCcE-EEEEecCCCCCceEEEcCEEEEccCCCCC
Q psy14461        285 RILLSSLTKAGVSI-QCCVIEKVISSFDGMK-GVRGFHPESKEPFADVFKTVVNAMEKKFD  343 (535)
Q Consensus       285 ~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~-~v~~~~~~~G~~~~~~~D~vi~a~G~~p~  343 (535)
                      ..+.+.+++.|+++ .++.++++..+ ++++ -|..++..+|+..++.++.||+|+|-...
T Consensus       145 ~~l~~~~~~~gv~i~~~~~~~~Li~e-~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~  204 (417)
T PF00890_consen  145 EALAKAAEEAGVDIRFNTRVTDLITE-DGRVTGVVAENPADGEFVRIKAKAVILATGGFGG  204 (417)
T ss_dssp             HHHHHHHHHTTEEEEESEEEEEEEEE-TTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred             HHHHHHHhhcCeeeeccceeeeEEEe-CCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence            34445567788999 99999999886 5655 36666335788788999999999986554

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PRK13984 putative oxidoreductase; Provisional

Probab=97.10  E-value=0.0012  Score=73.32  Aligned_cols=88  Identities=16%  Similarity=0.101  Sum_probs=64.5

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC-------c--cCcHHHHHHHHHhhhcCCeEE-cceEEEEEEE
Q psy14461        240 WPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL-------K--HFDQEMVRILLSSLTKAGVSI-QCCVIEKVIS  308 (535)
Q Consensus       240 ~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l-------~--~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~  308 (535)
                      ..++|+|||+|+.|+.+|..|+++|.+|+++++ +.+.       +  .+.+++.....+.+++.|+++ .++.+..   
T Consensus       282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~---  358 (604)
T PRK13984        282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLNTRVGK---  358 (604)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEECCCEeCC---
Confidence            467899999999999999999999999999998 5431       1  134455555556778889999 8877631   


Q ss_pred             eCCCcEEEEEecCCCCCceEEEcCEEEEccCCCC
Q psy14461        309 SFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKF  342 (535)
Q Consensus       309 ~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p  342 (535)
                      +      +.++   +.   ...+|.||+|+|..+
T Consensus       359 ~------~~~~---~~---~~~yD~vilAtGa~~  380 (604)
T PRK13984        359 D------IPLE---EL---REKHDAVFLSTGFTL  380 (604)
T ss_pred             c------CCHH---HH---HhcCCEEEEEcCcCC
Confidence            0      1111   11   357999999999763

>PTZ00058 glutathione reductase; Provisional

Probab=97.10  E-value=0.0054  Score=67.02  Aligned_cols=30  Identities=23%  Similarity=0.209  Sum_probs=28.8

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      .|+|||+|+.|..+|..+++.|.+|.+|++
T Consensus        50 DvvVIG~G~aG~~aA~~aa~~G~~ValIEk   79 (561)
T PTZ00058         50 DLIVIGGGSGGMAAARRAARNKAKVALVEK   79 (561)
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCeEEEEec
Confidence            699999999999999999999999999986

>TIGR02053 MerA mercuric reductase

Probab=97.09  E-value=0.0039  Score=66.82  Aligned_cols=93  Identities=19%  Similarity=0.119  Sum_probs=64.0

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRFC  168 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  168 (535)
                      .+++|||+|..|+..|......+.+|+|+++.+.+      ++..                      +. ++.       
T Consensus       167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~------l~~~----------------------d~-~~~-------  210 (463)
T TIGR02053       167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRL------LPRE----------------------EP-EIS-------  210 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcC------CCcc----------------------CH-HHH-------
Confidence            56899999999999988777788899999998743      1111                      11 111       


Q ss_pred             HHHHHHHHHHHHhcCcEEEEeE-EEEec--CC--EEEEc----eeEEEcceEEEeeCceecC
Q psy14461        169 IRAKNDSMRELKALGIDIVRTA-AAFTN--PH--TIKLS----NRSVTGFNFLLAVERRCLP  221 (535)
Q Consensus       169 ~~~~~~~~~~~~~~gV~~~~g~-~~~~~--~~--~v~~~----~~~~~~d~lViATGs~p~~  221 (535)
                          ..+...++..||+++.++ +..+.  +.  .+.+.    ..++.+|.||+|+|.+|..
T Consensus       211 ----~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~  268 (463)
T TIGR02053       211 ----AAVEEALAEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNT  268 (463)
T ss_pred             ----HHHHHHHHHcCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCCcCC
Confidence                122356677899998875 33322  22  23332    1579999999999999987

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PLN02985 squalene monooxygenase

Probab=97.09  E-value=0.0071  Score=65.57  Aligned_cols=32  Identities=16%  Similarity=0.226  Sum_probs=29.8

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      .-+|+|||||..|+-+|..|++.|.+|+++++
T Consensus        43 ~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr   74 (514)
T PLN02985         43 ATDVIIVGAGVGGSALAYALAKDGRRVHVIER   74 (514)
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCCeEEEEEC
Confidence            34799999999999999999999999999997

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=97.09  E-value=0.0079  Score=63.73  Aligned_cols=108  Identities=14%  Similarity=0.088  Sum_probs=67.8

Q ss_pred             hHHHHHHHHHhcCCcceEEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccc
Q psy14461         71 ENARAERYLNARGDRFAVLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSAL  150 (535)
Q Consensus        71 ~~~~~k~~~~~~~~~~~~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~  150 (535)
                      .+.+.+..+....    ..+++|+|+|+.|+..|......+.+|+++++.+.+..     +..                 
T Consensus       124 ~~~~~~~~l~~~~----~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~-----~~~-----------------  177 (427)
T TIGR03385       124 DTDAIKQYIDKNK----VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILN-----KLF-----------------  177 (427)
T ss_pred             HHHHHHHHHhhcC----CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCc-----ccc-----------------
Confidence            4554454443221    13579999999999988777777889999998774310     000                 


Q ss_pred             cccccCHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEeE-EEEec--CCEEEE-ceeEEEcceEEEeeCceecC
Q psy14461        151 NVTIRNWNAATKLIKRFCIRAKNDSMRELKALGIDIVRTA-AAFTN--PHTIKL-SNRSVTGFNFLLAVERRCLP  221 (535)
Q Consensus       151 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~-~~~~~--~~~v~~-~~~~~~~d~lViATGs~p~~  221 (535)
                           + ..+.           ..+.+.+++.||+++.+. +..++  ...+.+ ++.++.+|.||+|+|.+|..
T Consensus       178 -----~-~~~~-----------~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~  235 (427)
T TIGR03385       178 -----D-EEMN-----------QIVEEELKKHEINLRLNEEVDSIEGEERVKVFTSGGVYQADMVILATGIKPNS  235 (427)
T ss_pred             -----C-HHHH-----------HHHHHHHHHcCCEEEeCCEEEEEecCCCEEEEcCCCEEEeCEEEECCCccCCH
Confidence                 1 0111           112355677899998764 33333  222233 34679999999999998875

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=97.09  E-value=0.043  Score=59.17  Aligned_cols=62  Identities=18%  Similarity=0.062  Sum_probs=44.1

Q ss_pred             HHHHHHHHHhhhcCC-eEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCC
Q psy14461        281 QEMVRILLSSLTKAG-VSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKF  342 (535)
Q Consensus       281 ~~~~~~~~~~l~~~g-V~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p  342 (535)
                      ..+.+.+.+.+++.| +++ .+++|++++..+++.+.+++.++.+|+..++.+|.||+|.|.-.
T Consensus       183 ~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s  246 (494)
T PRK05257        183 GALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGA  246 (494)
T ss_pred             HHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcch
Confidence            456677777777776 999 99999999875344466665422345433689999999998643

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=97.07  E-value=0.0083  Score=54.16  Aligned_cols=41  Identities=17%  Similarity=0.093  Sum_probs=31.9

Q ss_pred             CCeEE--cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCC
Q psy14461        294 AGVSI--QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEK  340 (535)
Q Consensus       294 ~gV~i--~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~  340 (535)
                      .|+++  ...+|+++... ++...|.+.   +|.  .+.+|.|++|+|.
T Consensus       113 ~~i~v~~~~~~V~~i~~~-~~~~~v~~~---~g~--~~~~d~VvLa~Gh  155 (156)
T PF13454_consen  113 AGITVRHVRAEVVDIRRD-DDGYRVVTA---DGQ--SIRADAVVLATGH  155 (156)
T ss_pred             CCcEEEEEeeEEEEEEEc-CCcEEEEEC---CCC--EEEeCEEEECCCC
Confidence            46676  67789999887 455666663   777  7899999999995

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=97.07  E-value=0.025  Score=60.61  Aligned_cols=54  Identities=20%  Similarity=0.080  Sum_probs=40.4

Q ss_pred             cHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCC
Q psy14461        280 DQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKK  341 (535)
Q Consensus       280 ~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~  341 (535)
                      +..+...+.+.+++.|+++ .++.|++++.  ++.+.|+.   .+|   ++.+|.||+|+|.-
T Consensus       182 P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~--~~~~~v~t---~~g---~v~A~~VV~Atga~  236 (460)
T TIGR03329       182 PGLLVRGLRRVALELGVEIHENTPMTGLEE--GQPAVVRT---PDG---QVTADKVVLALNAW  236 (460)
T ss_pred             HHHHHHHHHHHHHHcCCEEECCCeEEEEee--CCceEEEe---CCc---EEECCEEEEccccc
Confidence            3456677777888899999 9999999975  23344554   355   58999999999853

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=97.06  E-value=0.029  Score=58.15  Aligned_cols=55  Identities=11%  Similarity=0.011  Sum_probs=40.9

Q ss_pred             HHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCC
Q psy14461        281 QEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKF  342 (535)
Q Consensus       281 ~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p  342 (535)
                      ..+...+.+.+.+.|+++ .+++++++..+ ++.+.|+.   .+|   ++.+|.||+|+|...
T Consensus       149 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~-~~~~~v~~---~~g---~~~a~~vV~A~G~~~  204 (376)
T PRK11259        149 ELAIKAHLRLAREAGAELLFNEPVTAIEAD-GDGVTVTT---ADG---TYEAKKLVVSAGAWV  204 (376)
T ss_pred             HHHHHHHHHHHHHCCCEEECCCEEEEEEee-CCeEEEEe---CCC---EEEeeEEEEecCcch
Confidence            445555666677789999 99999999875 45556655   245   589999999999753

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=97.05  E-value=0.014  Score=60.22  Aligned_cols=82  Identities=16%  Similarity=0.031  Sum_probs=61.1

Q ss_pred             HHHhCCCcEEEEEc--CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEE
Q psy14461        259 TLNFLGVPVTLVYS--RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVV  335 (535)
Q Consensus       259 ~l~~~g~~Vtlv~~--~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi  335 (535)
                      .++..|+...++.-  +++....-+.+.+.+++.+++.|+++ ++++|.+|+..++....|.+   .+|+  ++++|.|+
T Consensus       149 e~~aa~a~~eil~~~~rHiGTD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~---~~g~--~i~~~~vv  223 (486)
T COG2509         149 EFRAAGAGEEILPIYQRHIGTDILPKVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKL---TKGE--EIEADYVV  223 (486)
T ss_pred             HHHHhCCCceeeeccccccCccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEc---cCCc--EEecCEEE
Confidence            44455666666654  66665556788899999999999999 99999999876322234555   3787  89999999


Q ss_pred             EccCCCCCCC
Q psy14461        336 NAMEKKFDFA  345 (535)
Q Consensus       336 ~a~G~~p~~~  345 (535)
                      +|+|+.....
T Consensus       224 lA~Grsg~dw  233 (486)
T COG2509         224 LAPGRSGRDW  233 (486)
T ss_pred             EccCcchHHH
Confidence            9999876543

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=97.05  E-value=0.0074  Score=65.42  Aligned_cols=100  Identities=17%  Similarity=0.137  Sum_probs=69.5

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc-------C--------------------------------cH
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH-------F--------------------------------DQ  281 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~-------~--------------------------------~~  281 (535)
                      -.|+|||+|..|+-+|..+++.|.+|.++++ +.....       +                                ++
T Consensus        62 ~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~~s~Gg~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~~d~  141 (506)
T PRK06481         62 YDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYEETLKGGGGTNDK  141 (506)
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccCCccccCChHHHHhcCCCCCHHHHHHHHHHhcCCCCCH
Confidence            3699999999999999999999999999987 432100       0                                00


Q ss_pred             -------------------------------------------------HHHHHHHHhhhcCCeEE-cceEEEEEEEeCC
Q psy14461        282 -------------------------------------------------EMVRILLSSLTKAGVSI-QCCVIEKVISSFD  311 (535)
Q Consensus       282 -------------------------------------------------~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~  311 (535)
                                                                       .+...+.+.+++.|+++ +++.++++..+ +
T Consensus       142 ~l~~~~~~~s~~~i~wl~~~Gv~~~~~~~~~g~~~~r~~~p~~g~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~-~  220 (506)
T PRK06481        142 ALLRYFVDNSASAIDWLDSMGIKLDNLTITGGMSEKRTHRPHDGSAVGGYLVDGLLKNVQERKIPLFVNADVTKITEK-D  220 (506)
T ss_pred             HHHHHHHhccHHHHHHHHHcCceEeecccCCCCCCCceeccCCCCCChHHHHHHHHHHHHHcCCeEEeCCeeEEEEec-C
Confidence                                                             12233344456678999 99999999765 4


Q ss_pred             CcE-EEEEecCCCCCceEEEcCEEEEccC-CCCC
Q psy14461        312 GMK-GVRGFHPESKEPFADVFKTVVNAME-KKFD  343 (535)
Q Consensus       312 ~~~-~v~~~~~~~G~~~~~~~D~vi~a~G-~~p~  343 (535)
                      +++ .|.+.. .+|+..++.+|.||+|+| +.+|
T Consensus       221 g~V~Gv~~~~-~~g~~~~i~a~~VVlAtGG~~~n  253 (506)
T PRK06481        221 GKVTGVKVKI-NGKETKTISSKAVVVTTGGFGAN  253 (506)
T ss_pred             CEEEEEEEEe-CCCeEEEEecCeEEEeCCCcccC
Confidence            544 244432 244555799999999997 5554

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=97.05  E-value=0.0084  Score=66.74  Aligned_cols=100  Identities=13%  Similarity=0.050  Sum_probs=68.7

Q ss_pred             CcEEEECCChHHHHHHHHHHhC-CCcEEEEEc-CcCCcc-----C------------------------------c----
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFL-GVPVTLVYS-RRLLKH-----F------------------------------D----  280 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~-g~~Vtlv~~-~~~l~~-----~------------------------------~----  280 (535)
                      -+|+|||||++|+-+|..|+++ |.+|+|+++ +.+...     +                              +    
T Consensus        33 ~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~~~~  112 (634)
T PRK08294         33 VDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKPDPA  112 (634)
T ss_pred             CCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcCCCc
Confidence            4799999999999999999995 999999987 532110     0                              0    


Q ss_pred             ----------------------------HHHHHHHHHhhhcCC--eEE-cceEEEEEEEeCC--CcEEEEEecCC---CC
Q psy14461        281 ----------------------------QEMVRILLSSLTKAG--VSI-QCCVIEKVISSFD--GMKGVRGFHPE---SK  324 (535)
Q Consensus       281 ----------------------------~~~~~~~~~~l~~~g--V~i-~~~~v~~i~~~~~--~~~~v~~~~~~---~G  324 (535)
                                                  ..+.+.+.+.+.+.+  +++ .++++++++.+++  ..++|++++.+   +|
T Consensus       113 ~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~g  192 (634)
T PRK08294        113 DPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHEG  192 (634)
T ss_pred             cccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCCCC
Confidence                                        012222334444444  577 8899999976522  24777776421   46


Q ss_pred             CceEEEcCEEEEccCCC
Q psy14461        325 EPFADVFKTVVNAMEKK  341 (535)
Q Consensus       325 ~~~~~~~D~vi~a~G~~  341 (535)
                      +++++.+|+||-|-|.+
T Consensus       193 ~~~tv~A~~lVGaDGa~  209 (634)
T PRK08294        193 EEETVRAKYVVGCDGAR  209 (634)
T ss_pred             ceEEEEeCEEEECCCCc
Confidence            54689999999999964

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=97.04  E-value=0.0087  Score=62.46  Aligned_cols=48  Identities=19%  Similarity=0.302  Sum_probs=36.7

Q ss_pred             CceEcCCCCCcCCCCEEEeCCcCC----CCCCcHH----HHHHHHHHHHHHHhCCC
Q psy14461        360 SYVVCNEKDQTSVGNIFAVGGIVH----GKPNNAS----MAAISARLIIERLYGMQ  407 (535)
Q Consensus       360 G~i~vd~~~~T~~~~IyA~GD~~~----~~~~~~~----~A~~~g~~aa~~i~g~~  407 (535)
                      |.|.||.+.||+.|++||+|.++.    |.-.++.    .+.--|+.||++|.+..
T Consensus       342 GGI~vD~~GrTsi~gLYAiGEvA~TGlHGANRLASNSLLE~vV~g~~aA~~i~~~~  397 (518)
T COG0029         342 GGIAVDANGRTSIPGLYAIGEVACTGLHGANRLASNSLLECLVFGKRAAEDIAGRL  397 (518)
T ss_pred             ccEEECCCCcccCcccEEeeeecccccccchhhhhhhHHHHHHHHHHHHHHhhccc
Confidence            668889999999999999999986    2233444    35666888888888753

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=97.03  E-value=0.0087  Score=65.52  Aligned_cols=31  Identities=23%  Similarity=0.377  Sum_probs=29.4

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      -.|+|||||.+|+-+|..|+++|.+|+|+++
T Consensus         7 ~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk   37 (546)
T PRK11101          7 TDVIIIGGGATGAGIARDCALRGLRCILVER   37 (546)
T ss_pred             ccEEEECcCHHHHHHHHHHHHcCCeEEEEEC
Confidence            4699999999999999999999999999987

>TIGR00136 gidA glucose-inhibited division protein A

Probab=96.99  E-value=0.0094  Score=64.91  Aligned_cols=95  Identities=17%  Similarity=0.154  Sum_probs=63.5

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC---c---------------cC---c--------------------
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL---K---------------HF---D--------------------  280 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l---~---------------~~---~--------------------  280 (535)
                      .|+|||+|..|+++|..+++.|.+|.++++ ....   +               .+   +                    
T Consensus         2 DViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln~s   81 (617)
T TIGR00136         2 DVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLNSS   81 (617)
T ss_pred             eEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheecccC
Confidence            489999999999999999999999999986 3211   0               00   0                    


Q ss_pred             --------------HHHHHHHHHhhhcC-CeEEcceEEEEEEEeCCCc-EEEEEecCCCCCceEEEcCEEEEccCCCC
Q psy14461        281 --------------QEMVRILLSSLTKA-GVSIQCCVIEKVISSFDGM-KGVRGFHPESKEPFADVFKTVVNAMEKKF  342 (535)
Q Consensus       281 --------------~~~~~~~~~~l~~~-gV~i~~~~v~~i~~~~~~~-~~v~~~~~~~G~~~~~~~D~vi~a~G~~p  342 (535)
                                    ..+...+.+.+++. ++.+....+.++..++++. ..|.+   .+|.  .+.+|.||+|+|.-.
T Consensus        82 kgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~~Vv~li~e~~g~V~GV~t---~~G~--~I~Ad~VILATGtfL  154 (617)
T TIGR00136        82 KGPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQGEVEDLILEDNDEIKGVVT---QDGL--KFRAKAVIITTGTFL  154 (617)
T ss_pred             CCCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEEecCCcEEEEEE---CCCC--EEECCEEEEccCccc
Confidence                          01112344455555 7888444666664431233 34665   3676  799999999999764

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=96.99  E-value=0.014  Score=63.07  Aligned_cols=95  Identities=9%  Similarity=-0.046  Sum_probs=58.7

Q ss_pred             hHHHHHHHHHHhCCCcEEEEEc-CcC---CccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEe-CC--CcE-EEEEecC
Q psy14461        251 LMAVEIAATLNFLGVPVTLVYS-RRL---LKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISS-FD--GMK-GVRGFHP  321 (535)
Q Consensus       251 ~~g~e~A~~l~~~g~~Vtlv~~-~~~---l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~-~~--~~~-~v~~~~~  321 (535)
                      .+|.|+..++.+.=.++.-+.. ..+   -....+.+...+.+.++++||+| ++++|+++..+ ++  +.+ .+.+.. 
T Consensus       192 hSA~E~rry~~rf~~~~~~l~~~s~l~ft~ynqyeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~-  270 (576)
T PRK13977        192 HSALEMRRYMHRFIHHIGGLPDLSGLKFTKYNQYESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTR-  270 (576)
T ss_pred             hHHHHHHHHHHHHHHhhccCCccccccCCCCCchhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEe-
Confidence            4788888888776211111111 111   11123678888999999999999 99999999864 22  222 244442 


Q ss_pred             CCCCc---eEEEcCEEEEccCCCCCCCCC
Q psy14461        322 ESKEP---FADVFKTVVNAMEKKFDFAAL  347 (535)
Q Consensus       322 ~~G~~---~~~~~D~vi~a~G~~p~~~~l  347 (535)
                       +|+.   ...+.|+||+++|.-.....+
T Consensus       271 -~~~~~~I~l~~~DlVivTnGs~t~ns~~  298 (576)
T PRK13977        271 -NGKEETIDLTEDDLVFVTNGSITESSTY  298 (576)
T ss_pred             -CCceeEEEecCCCEEEEeCCcCcccccc
Confidence             3332   234699999999965544333

>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=96.98  E-value=0.0024  Score=50.66  Aligned_cols=53  Identities=26%  Similarity=0.264  Sum_probs=36.0

Q ss_pred             cEEEEeCCCchhhHHHHHHHHHhcCCcceEEEEEeeCCccHHHHHHHHHhhCCCeE
Q psy14461         59 RILIFTHAVLREENARAERYLNARGDRFAVLYLDRIGDEGILLEEELKRQTNQRRD  114 (535)
Q Consensus        59 ~v~v~~k~~cp~~~~~~k~~~~~~~~~~~~~~v~iiG~G~aG~~~al~~~~~~~~V  114 (535)
                      .|.+|+++.|| ||.++|+++.+.|..++.++  +.-..+.-.+..+....+.++|
T Consensus         2 ~v~iyt~~~CP-yC~~ak~~L~~~g~~~~~i~--~~~~~~~~~~~~~~~~~g~~tv   54 (80)
T COG0695           2 NVTIYTKPGCP-YCKRAKRLLDRKGVDYEEID--VDDDEPEEAREMVKRGKGQRTV   54 (80)
T ss_pred             CEEEEECCCCc-hHHHHHHHHHHcCCCcEEEE--ecCCcHHHHHHHHHHhCCCCCc
Confidence            47899999999 99999999999998764333  3333223244555555444443

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=96.97  E-value=0.0036  Score=65.02  Aligned_cols=91  Identities=14%  Similarity=0.096  Sum_probs=60.3

Q ss_pred             cEEEECCChHHHHHHHHHHhC--CCcEEEEEc-CcCCc-----cCcHHHH----H-------------------------
Q psy14461        243 KTLVLGGSLMAVEIAATLNFL--GVPVTLVYS-RRLLK-----HFDQEMV----R-------------------------  285 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~--g~~Vtlv~~-~~~l~-----~~~~~~~----~-------------------------  285 (535)
                      .|+|||||..|+.+|..|++.  |.+|.++++ +.+.+     .++.++.    .                         
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~   80 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK   80 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence            489999999999999999987  999999998 63322     1111111    0                         


Q ss_pred             ---------HHHHh-hhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCC
Q psy14461        286 ---------ILLSS-LTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFD  343 (535)
Q Consensus       286 ---------~~~~~-l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~  343 (535)
                               .+.+. +++.+..+ .+.+|++++.   +.  |++.   +|+  ++.+|.||.|.|..+.
T Consensus        81 ~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~~---~~--v~l~---dg~--~~~A~~VI~A~G~~s~  139 (370)
T TIGR01789        81 TAYRSMTSTRFHEGLLQAFPEGVILGRKAVGLDA---DG--VDLA---PGT--RINARSVIDCRGFKPS  139 (370)
T ss_pred             CCceEEEHHHHHHHHHHhhcccEEecCEEEEEeC---CE--EEEC---CCC--EEEeeEEEECCCCCCC
Confidence                     01111 11112336 6788888842   33  4443   677  8999999999998864

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>TIGR00275 flavoprotein, HI0933 family

Probab=96.97  E-value=0.0034  Score=65.95  Aligned_cols=32  Identities=16%  Similarity=0.078  Sum_probs=29.3

Q ss_pred             EeeCCccHHHHHHHHHhhCCCeEEEEecCCcc
Q psy14461         92 DRIGDEGILLEEELKRQTNQRRDELQERGSHL  123 (535)
Q Consensus        92 ~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~  123 (535)
                      +|||+|++|+.+|+.+...+.+|+|+|+.+.+
T Consensus         1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~   32 (400)
T TIGR00275         1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKI   32 (400)
T ss_pred             CEEEEeHHHHHHHHHHHhcCCcEEEEecCccc
Confidence            58999999999999998899999999998864

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PTZ00062 glutaredoxin; Provisional

Probab=96.97  E-value=0.0018  Score=60.96  Aligned_cols=65  Identities=26%  Similarity=0.312  Sum_probs=50.4

Q ss_pred             CChhHHHHhhhcCCcEEEEeC-----CCchhhHHHHHHHHHhcCCcceEEEEEeeCCccHHHHHHHHHhhCCCeE
Q psy14461         45 ETPPAYISRLSYENRILIFTH-----AVLREENARAERYLNARGDRFAVLYLDRIGDEGILLEEELKRQTNQRRD  114 (535)
Q Consensus        45 ~~l~~~~~~~i~~~~v~v~~k-----~~cp~~~~~~k~~~~~~~~~~~~~~v~iiG~G~aG~~~al~~~~~~~~V  114 (535)
                      ..+..+++.++.+++|++|+|     ++|| +|.+++.++.+.+.++..++|.   .... ++.++....+..+|
T Consensus       100 ~~~~~~v~~li~~~~Vvvf~Kg~~~~p~C~-~C~~~k~~L~~~~i~y~~~DI~---~d~~-~~~~l~~~sg~~Tv  169 (204)
T PTZ00062        100 EDTVEKIERLIRNHKILLFMKGSKTFPFCR-FSNAVVNMLNSSGVKYETYNIF---EDPD-LREELKVYSNWPTY  169 (204)
T ss_pred             HHHHHHHHHHHhcCCEEEEEccCCCCCCCh-hHHHHHHHHHHcCCCEEEEEcC---CCHH-HHHHHHHHhCCCCC
Confidence            346788999999999999998     5899 9999999999999887655543   3344 67777776655444

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=96.96  E-value=0.0054  Score=64.97  Aligned_cols=93  Identities=16%  Similarity=0.140  Sum_probs=64.9

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRFC  168 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  168 (535)
                      .+++|||+|+.|+.-|-.....+.+|||+|+.+.+      +|..                      |            
T Consensus       174 ~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~i------Lp~~----------------------D------------  213 (454)
T COG1249         174 KSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRI------LPGE----------------------D------------  213 (454)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC------CCcC----------------------C------------
Confidence            56899999999999887777789999999999865      3322                      1            


Q ss_pred             HHHHHHHHHHHHhcCcEEEEeEEEE-e--cCC--EEEEce-e--EEEcceEEEeeCceecC
Q psy14461        169 IRAKNDSMRELKALGIDIVRTAAAF-T--NPH--TIKLSN-R--SVTGFNFLLAVERRCLP  221 (535)
Q Consensus       169 ~~~~~~~~~~~~~~gV~~~~g~~~~-~--~~~--~v~~~~-~--~~~~d~lViATGs~p~~  221 (535)
                      +++...+...+++.|++++.++... .  +..  .+.+.+ .  .+.+|++++|+|-+|+.
T Consensus       214 ~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~  274 (454)
T COG1249         214 PEISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNT  274 (454)
T ss_pred             HHHHHHHHHHHHhCCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCccCC
Confidence            1122223356677789888776332 2  122  244433 2  68899999999999987

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=96.96  E-value=0.01  Score=64.43  Aligned_cols=50  Identities=14%  Similarity=0.106  Sum_probs=37.0

Q ss_pred             hhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCC
Q psy14461        291 LTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKK  341 (535)
Q Consensus       291 l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~  341 (535)
                      ..+.|+++ .+++|+++..+ ++.+.|++.+..+|+..++.++.||.|+|.-
T Consensus       165 A~~~Ga~i~~~~~V~~i~~~-~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~w  215 (508)
T PRK12266        165 AAERGAEILTRTRVVSARRE-NGLWHVTLEDTATGKRYTVRARALVNAAGPW  215 (508)
T ss_pred             HHHcCCEEEcCcEEEEEEEe-CCEEEEEEEEcCCCCEEEEEcCEEEECCCcc
Confidence            34568999 99999999765 4556666653335655679999999999963

>PRK08401 L-aspartate oxidase; Provisional

Probab=96.96  E-value=0.0081  Score=64.42  Aligned_cols=33  Identities=9%  Similarity=0.017  Sum_probs=30.7

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCC
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGS  121 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~  121 (535)
                      ++|+|||+|.+|+.+|+.....+.+|+|+||..
T Consensus         2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~   34 (466)
T PRK08401          2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGI   34 (466)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            578999999999999999988899999999975

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=96.92  E-value=0.008  Score=64.67  Aligned_cols=93  Identities=13%  Similarity=0.074  Sum_probs=62.7

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRFC  168 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  168 (535)
                      .+++|+|+|..|+..|......+.+|+|+++.+.+      ++..                      + .++..      
T Consensus       184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~------l~~~----------------------d-~~~~~------  228 (475)
T PRK06327        184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAF------LAAA----------------------D-EQVAK------  228 (475)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCcc------CCcC----------------------C-HHHHH------
Confidence            47899999999999987777778999999998743      1111                      1 11111      


Q ss_pred             HHHHHHHHHHHHhcCcEEEEeE-EEEec--CCEE--EEce-----eEEEcceEEEeeCceecC
Q psy14461        169 IRAKNDSMRELKALGIDIVRTA-AAFTN--PHTI--KLSN-----RSVTGFNFLLAVERRCLP  221 (535)
Q Consensus       169 ~~~~~~~~~~~~~~gV~~~~g~-~~~~~--~~~v--~~~~-----~~~~~d~lViATGs~p~~  221 (535)
                           ...+.+++.||+++.++ +..++  +..+  .+.+     .++.+|.|++|+|.+|..
T Consensus       229 -----~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~  286 (475)
T PRK06327        229 -----EAAKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNT  286 (475)
T ss_pred             -----HHHHHHHHcCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCccCC
Confidence                 12245667899998874 33332  2333  3222     469999999999999976

>PTZ00052 thioredoxin reductase; Provisional

Probab=96.92  E-value=0.0029  Score=68.43  Aligned_cols=30  Identities=23%  Similarity=0.228  Sum_probs=28.9

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      .|+|||+|+.|+.+|..++++|.+|.++++
T Consensus         7 DviVIG~GpaG~~AA~~aa~~G~~V~lie~   36 (499)
T PTZ00052          7 DLVVIGGGSGGMAAAKEAAAHGKKVALFDY   36 (499)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence            699999999999999999999999999995

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.92  E-value=0.042  Score=60.65  Aligned_cols=35  Identities=14%  Similarity=0.053  Sum_probs=31.6

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHL  123 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~  123 (535)
                      .||+|||+|.||+.||+.....+.+|+|+||....
T Consensus         8 ~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~   42 (588)
T PRK08958          8 FDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPT   42 (588)
T ss_pred             cCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCC
Confidence            57999999999999999998888999999998643

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=96.91  E-value=0.0025  Score=66.69  Aligned_cols=33  Identities=36%  Similarity=0.387  Sum_probs=30.7

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcC
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRL  275 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~  275 (535)
                      +|+|||||.+|+|+|..|++.|.+|+++++ +..
T Consensus         2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~   35 (433)
T TIGR00137         2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEK   35 (433)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc
Confidence            699999999999999999999999999997 554

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=96.91  E-value=0.00099  Score=70.62  Aligned_cols=95  Identities=25%  Similarity=0.219  Sum_probs=27.0

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc--------C----------------------------------
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH--------F----------------------------------  279 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~--------~----------------------------------  279 (535)
                      .|+|||||+.|+-+|..+++.|.+|.|+++ +.+...        +                                  
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~~   80 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRYG   80 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-------------
T ss_pred             CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhcccccccccc
Confidence            489999999999999999999999999998 644110        0                                  


Q ss_pred             -------cH-HHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcE-EEEEecCCCCCceEEEcCEEEEccCC
Q psy14461        280 -------DQ-EMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMK-GVRGFHPESKEPFADVFKTVVNAMEK  340 (535)
Q Consensus       280 -------~~-~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~-~v~~~~~~~G~~~~~~~D~vi~a~G~  340 (535)
                             ++ .+...+.+.+++.||++ .++.+.++..+ ++++ .|++.+ .+| ..++.++.+|-|+|.
T Consensus        81 ~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~-~~~i~~V~~~~-~~g-~~~i~A~~~IDaTG~  148 (428)
T PF12831_consen   81 WVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRD-GGRITGVIVET-KSG-RKEIRAKVFIDATGD  148 (428)
T ss_dssp             -----------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc-ccccccccccccccc
Confidence                   00 01112344556779999 99999999876 4444 466543 234 458999999999994

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=96.88  E-value=0.0016  Score=60.71  Aligned_cols=41  Identities=10%  Similarity=-0.074  Sum_probs=35.9

Q ss_pred             ceEEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccc
Q psy14461         86 FAVLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFR  126 (535)
Q Consensus        86 ~~~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~  126 (535)
                      +...||+|+|+||+|+.||.++...+.+|++||+.-.+++.
T Consensus        28 ~~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG   68 (262)
T COG1635          28 YLESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGG   68 (262)
T ss_pred             hhhccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCc
Confidence            44578899999999999999999999999999999876543

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=96.88  E-value=0.078  Score=57.14  Aligned_cols=55  Identities=15%  Similarity=0.113  Sum_probs=40.6

Q ss_pred             HHHHHHHHHhhhc----CC--eEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCC
Q psy14461        281 QEMVRILLSSLTK----AG--VSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKK  341 (535)
Q Consensus       281 ~~~~~~~~~~l~~----~g--V~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~  341 (535)
                      ..+...+.+.+++    .|  +++ .+++|++|+..+++.+.|+.   .+|   ++.+|.||+|+|.-
T Consensus       211 ~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T---~~G---~i~A~~VVvaAG~~  272 (497)
T PTZ00383        211 QKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHT---NRG---EIRARFVVVSACGY  272 (497)
T ss_pred             HHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEE---CCC---EEEeCEEEECcChh
Confidence            3566667777777    67  889 99999999875334455655   255   59999999999854

>PLN02661 Putative thiazole synthesis

Probab=96.87  E-value=0.0055  Score=62.30  Aligned_cols=49  Identities=12%  Similarity=0.048  Sum_probs=36.2

Q ss_pred             HHHHHhcCCcceEEEEEeeCCccHHHHHHHHHhh-CCCeEEEEecCCcccc
Q psy14461         76 ERYLNARGDRFAVLYLDRIGDEGILLEEELKRQT-NQRRDELQERGSHLSF  125 (535)
Q Consensus        76 k~~~~~~~~~~~~~~v~iiG~G~aG~~~al~~~~-~~~~V~lie~~~~~~~  125 (535)
                      +++++.+.. +.-.+|+|||+|++|+.+|+.+.. .+.+|+|+|+...+++
T Consensus        81 ~~~~~~l~~-~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GG  130 (357)
T PLN02661         81 RRYMTDMIT-YADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGG  130 (357)
T ss_pred             HhHhhhhhh-cccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCccccc
Confidence            344444432 223689999999999999998875 4789999999876543

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=96.86  E-value=0.0084  Score=47.39  Aligned_cols=34  Identities=24%  Similarity=0.093  Sum_probs=30.7

Q ss_pred             EEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcc
Q psy14461         90 YLDRIGDEGILLEEELKRQTNQRRDELQERGSHL  123 (535)
Q Consensus        90 ~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~  123 (535)
                      +++|||+|..|+..|......+.+|+|+++.+.+
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~   34 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRL   34 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchh
Confidence            4799999999999998888889999999999865

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=96.85  E-value=0.0051  Score=64.02  Aligned_cols=34  Identities=9%  Similarity=-0.140  Sum_probs=30.3

Q ss_pred             EEEeeCCccHHHHHHHHH--hhCCCeEEEEecCCcc
Q psy14461         90 YLDRIGDEGILLEEELKR--QTNQRRDELQERGSHL  123 (535)
Q Consensus        90 ~v~iiG~G~aG~~~al~~--~~~~~~V~lie~~~~~  123 (535)
                      ||+|||+|+||++.|...  ...+.+|+|+|+.+..
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~   36 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKP   36 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccc
Confidence            579999999999999877  7789999999998765

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=96.85  E-value=0.0018  Score=49.59  Aligned_cols=34  Identities=21%  Similarity=0.056  Sum_probs=29.7

Q ss_pred             eeCCccHHHHHHHHHhhCCCeEEEEecCCccccc
Q psy14461         93 RIGDEGILLEEELKRQTNQRRDELQERGSHLSFR  126 (535)
Q Consensus        93 iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~  126 (535)
                      |||+|.+|+.+|..+...+.+|+|+|+.+.+++.
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~   34 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGR   34 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGG
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcc
Confidence            7999999999999888889999999999987654

...

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=96.84  E-value=0.0095  Score=63.80  Aligned_cols=30  Identities=23%  Similarity=0.272  Sum_probs=28.9

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      .|+|||||+.|+.+|..|++.|.+|.++++
T Consensus         5 DvvIIG~G~aGl~aA~~l~~~g~~v~lie~   34 (460)
T PRK06292          5 DVIVIGAGPAGYVAARRAAKLGKKVALIEK   34 (460)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeC
Confidence            699999999999999999999999999997

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=96.84  E-value=0.0085  Score=63.95  Aligned_cols=55  Identities=16%  Similarity=0.132  Sum_probs=35.8

Q ss_pred             HHHHHHhhhcCCeEE-cceEEEEEEEeCCCcE-EEEEecCCCCCceEEEcCEEEEccCCCCCC
Q psy14461        284 VRILLSSLTKAGVSI-QCCVIEKVISSFDGMK-GVRGFHPESKEPFADVFKTVVNAMEKKFDF  344 (535)
Q Consensus       284 ~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~-~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~  344 (535)
                      .+.+.+...+.||++ .+ +|.++..++++.+ .|++   .+|+  ++++|++|=|+|++...
T Consensus       157 d~~L~~~A~~~Gv~~~~g-~V~~v~~~~~g~i~~v~~---~~g~--~i~ad~~IDASG~~s~L  213 (454)
T PF04820_consen  157 DQFLRRHAEERGVEVIEG-TVVDVELDEDGRITAVRL---DDGR--TIEADFFIDASGRRSLL  213 (454)
T ss_dssp             HHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEE---TTSE--EEEESEEEE-SGGG-CC
T ss_pred             HHHHHHHHhcCCCEEEeC-EEEEEEEcCCCCEEEEEE---CCCC--EEEEeEEEECCCccchh
Confidence            344556667789999 76 4777766545554 4666   3676  89999999999997653

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=96.83  E-value=0.013  Score=63.24  Aligned_cols=30  Identities=23%  Similarity=0.254  Sum_probs=28.6

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      .++|||+|+.|+.+|..+++.|.+|.++++
T Consensus         4 DvvVIG~G~aG~~aA~~aa~~G~~v~lie~   33 (484)
T TIGR01438         4 DLIVIGGGSGGLAAAKEAADYGAKVMLLDF   33 (484)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence            699999999999999999999999999994

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=96.81  E-value=0.01  Score=61.79  Aligned_cols=35  Identities=11%  Similarity=-0.050  Sum_probs=31.9

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHL  123 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~  123 (535)
                      .+|+|||+|++|+.+|+.+...+.+|+|+|+.+..
T Consensus         6 ~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~   40 (388)
T PRK07608          6 FDVVVVGGGLVGASLALALAQSGLRVALLAPRAPP   40 (388)
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCc
Confidence            57899999999999999998889999999998754

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=96.79  E-value=0.016  Score=61.72  Aligned_cols=30  Identities=20%  Similarity=0.314  Sum_probs=28.3

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-CcEEEEEc
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLG-VPVTLVYS  272 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g-~~Vtlv~~  272 (535)
                      .|+|||+|..|+-+|..+++.| .+|+|+++
T Consensus         1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk   31 (439)
T TIGR01813         1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEK   31 (439)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCccEEEEec
Confidence            4899999999999999999999 99999987

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PRK07121 hypothetical protein; Validated

Probab=96.79  E-value=0.018  Score=62.33  Aligned_cols=31  Identities=16%  Similarity=0.108  Sum_probs=28.4

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      -.|+|||+|..|+-+|..+++.|.+|+++++
T Consensus        21 ~DVvVVGaG~AGl~AA~~aae~G~~VillEK   51 (492)
T PRK07121         21 ADVVVVGFGAAGACAAIEAAAAGARVLVLER   51 (492)
T ss_pred             cCEEEECcCHHHHHHHHHHHHCCCeEEEEeC
Confidence            4699999999999999999999999999987

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=96.78  E-value=0.07  Score=59.38  Aligned_cols=36  Identities=8%  Similarity=-0.071  Sum_probs=32.1

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcc
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHL  123 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~  123 (535)
                      ..||+|||+|.||+.||+.....+.+|+|+||....
T Consensus        50 ~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~   85 (635)
T PLN00128         50 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPT   85 (635)
T ss_pred             ecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCC
Confidence            368999999999999999998888999999998743

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=96.76  E-value=0.014  Score=65.44  Aligned_cols=31  Identities=26%  Similarity=0.378  Sum_probs=29.7

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      .+|+|||||.+|+-+|..|+++|.+|+|+++
T Consensus       261 ~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~  291 (662)
T PRK01747        261 RDAAIIGGGIAGAALALALARRGWQVTLYEA  291 (662)
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCeEEEEec
Confidence            4899999999999999999999999999998

>KOG0404|consensus

Probab=96.76  E-value=0.0095  Score=55.65  Aligned_cols=99  Identities=12%  Similarity=0.018  Sum_probs=71.0

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc---CcC--------------Cc-----cCcHHHHHHHHHhhhcCCeEE
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS---RRL--------------LK-----HFDQEMVRILLSSLTKAGVSI  298 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~---~~~--------------l~-----~~~~~~~~~~~~~l~~~gV~i  298 (535)
                      -.+|+|||+|+.|-.+|.+++|...+-.+++-   ..+              +|     ...+++.+.+++.-++.|.++
T Consensus         8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt~i   87 (322)
T KOG0404|consen    8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGTEI   87 (322)
T ss_pred             eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhccee
Confidence            35899999999999999999998766666643   111              12     235788888888888899999


Q ss_pred             cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCC
Q psy14461        299 QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAA  346 (535)
Q Consensus       299 ~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~  346 (535)
                      ...+|.+++.. ..-+++..    +.+  .+.+|.||+|||....--.
T Consensus        88 ~tEtVskv~~s-skpF~l~t----d~~--~v~~~avI~atGAsAkRl~  128 (322)
T KOG0404|consen   88 ITETVSKVDLS-SKPFKLWT----DAR--PVTADAVILATGASAKRLH  128 (322)
T ss_pred             eeeehhhcccc-CCCeEEEe----cCC--ceeeeeEEEecccceeeee
Confidence            44467777654 33445544    333  6899999999997655433

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=96.75  E-value=0.011  Score=62.90  Aligned_cols=34  Identities=18%  Similarity=-0.030  Sum_probs=31.3

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSH  122 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~  122 (535)
                      ++|+|||+||+|..+|+.+...+.+|+|+|+...
T Consensus        40 ~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~   73 (450)
T PLN00093         40 LRVAVIGGGPAGACAAETLAKGGIETFLIERKLD   73 (450)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence            6899999999999999999889999999999753

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=96.75  E-value=0.02  Score=61.38  Aligned_cols=30  Identities=30%  Similarity=0.337  Sum_probs=28.9

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      .|+|||+|..|+-+|..+++.|.+|+++++
T Consensus         6 DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk   35 (466)
T PRK08274          6 DVLVIGGGNAALCAALAAREAGASVLLLEA   35 (466)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeC
Confidence            699999999999999999999999999998

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=96.65  E-value=0.046  Score=51.39  Aligned_cols=104  Identities=20%  Similarity=0.171  Sum_probs=63.7

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc-------C-------------------------------cHH
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH-------F-------------------------------DQE  282 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~-------~-------------------------------~~~  282 (535)
                      -.|+|||+|+.|+-+|..|++.|.+|.++++ ..+-..       +                               ..+
T Consensus        18 ~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~~~g~~v~d~~~   97 (230)
T PF01946_consen   18 YDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEYGDGYYVADSVE   97 (230)
T ss_dssp             ESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-SSEEEES-HHH
T ss_pred             CCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEeCCeEEEEcHHH
Confidence            5799999999999999999999999999998 433211       0                               012


Q ss_pred             HHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEE-EEEecC---CCC---CceEEEcCEEEEccCCCCCCC
Q psy14461        283 MVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKG-VRGFHP---ESK---EPFADVFKTVVNAMEKKFDFA  345 (535)
Q Consensus       283 ~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~-v~~~~~---~~G---~~~~~~~D~vi~a~G~~p~~~  345 (535)
                      +...+....-+.|+++ ....++++--.+++++. |.+..+   ..|   .+..+++..|+-|||...+.-
T Consensus        98 ~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda~v~  168 (230)
T PF01946_consen   98 FTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDAEVV  168 (230)
T ss_dssp             HHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSSSST
T ss_pred             HHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCchHHH
Confidence            2233333344589999 99999988655334543 333210   112   234899999999999876653

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=96.64  E-value=0.025  Score=62.63  Aligned_cols=34  Identities=21%  Similarity=0.222  Sum_probs=31.7

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        239 AWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       239 ~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      ..+.+|+|||||..|+-+|..|++.|.+|+|+++
T Consensus        79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er  112 (668)
T PLN02927         79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEK  112 (668)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEec
Confidence            3457899999999999999999999999999998

>TIGR02190 GlrX-dom Glutaredoxin-family domain

Probab=96.64  E-value=0.0029  Score=49.97  Aligned_cols=37  Identities=22%  Similarity=0.281  Sum_probs=32.1

Q ss_pred             hcCCcEEEEeCCCchhhHHHHHHHHHhcCCcceEEEEE
Q psy14461         55 SYENRILIFTHAVLREENARAERYLNARGDRFAVLYLD   92 (535)
Q Consensus        55 i~~~~v~v~~k~~cp~~~~~~k~~~~~~~~~~~~~~v~   92 (535)
                      .++++|.+|++++|| +|.+++.++.+.|.+++.+++.
T Consensus         5 ~~~~~V~ly~~~~Cp-~C~~ak~~L~~~gi~y~~idi~   41 (79)
T TIGR02190         5 RKPESVVVFTKPGCP-FCAKAKATLKEKGYDFEEIPLG   41 (79)
T ss_pred             CCCCCEEEEECCCCH-hHHHHHHHHHHcCCCcEEEECC
Confidence            467899999999999 9999999999999888765543

This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=96.63  E-value=0.029  Score=60.79  Aligned_cols=31  Identities=26%  Similarity=0.277  Sum_probs=29.4

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      -.|+|||||.+|+-+|..|+++|.+|.++++
T Consensus         7 ~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk   37 (502)
T PRK13369          7 YDLFVIGGGINGAGIARDAAGRGLKVLLCEK   37 (502)
T ss_pred             cCEEEECCCHHHHHHHHHHHhCCCcEEEEEC
Confidence            3699999999999999999999999999987

>PRK06184 hypothetical protein; Provisional

Probab=96.63  E-value=0.017  Score=62.52  Aligned_cols=35  Identities=11%  Similarity=-0.034  Sum_probs=31.9

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHL  123 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~  123 (535)
                      .+|+|||+|++|+.+|+.+...+.+|+|+|+.+..
T Consensus         4 ~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~   38 (502)
T PRK06184          4 TDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEP   38 (502)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            57899999999999999999999999999998643

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=96.61  E-value=0.013  Score=63.11  Aligned_cols=93  Identities=14%  Similarity=0.111  Sum_probs=61.1

Q ss_pred             EEEEeeCCccHHHHHHHHHh---hCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQ---TNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIK  165 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~---~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~  165 (535)
                      .+++|||+|..|+..|....   ..+.+|+|+++.+.+      ++.+                      |.        
T Consensus       188 ~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~i------l~~~----------------------d~--------  231 (486)
T TIGR01423       188 RRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMI------LRGF----------------------DS--------  231 (486)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcc------cccc----------------------CH--------
Confidence            46899999999998775322   237899999988754      1211                      10        


Q ss_pred             HHHHHHHHHHHHHHHhcCcEEEEeE-EEEec---CC--EEEEc-eeEEEcceEEEeeCceecC
Q psy14461        166 RFCIRAKNDSMRELKALGIDIVRTA-AAFTN---PH--TIKLS-NRSVTGFNFLLAVERRCLP  221 (535)
Q Consensus       166 ~~~~~~~~~~~~~~~~~gV~~~~g~-~~~~~---~~--~v~~~-~~~~~~d~lViATGs~p~~  221 (535)
                          ++...+...+++.||+++.+. +..+.   ..  .+.+. +.++.+|.|++|+|.+|..
T Consensus       232 ----~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~  290 (486)
T TIGR01423       232 ----TLRKELTKQLRANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRT  290 (486)
T ss_pred             ----HHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCc
Confidence                111223356778899998875 22221   22  34443 3679999999999999976

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=96.61  E-value=0.0094  Score=47.10  Aligned_cols=61  Identities=25%  Similarity=0.302  Sum_probs=44.5

Q ss_pred             cEEEEeCCCchhhHHHHHHHHHhcCCcceEEEEEeeCCccHHHHHHHHHhhCCCeE-EEEecCC
Q psy14461         59 RILIFTHAVLREENARAERYLNARGDRFAVLYLDRIGDEGILLEEELKRQTNQRRD-ELQERGS  121 (535)
Q Consensus        59 ~v~v~~k~~cp~~~~~~k~~~~~~~~~~~~~~v~iiG~G~aG~~~al~~~~~~~~V-~lie~~~  121 (535)
                      +|++|++.+|| +|.++++++.+.+..+..+++.+.-.+.. +...+....+..++ +|+-.+.
T Consensus         1 ~v~~y~~~~Cp-~C~~~~~~l~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~g~~~~P~v~~~g~   62 (82)
T cd03419           1 PVVVFSKSYCP-YCKRAKSLLKELGVKPAVVELDQHEDGSE-IQDYLQELTGQRTVPNVFIGGK   62 (82)
T ss_pred             CEEEEEcCCCH-HHHHHHHHHHHcCCCcEEEEEeCCCChHH-HHHHHHHHhCCCCCCeEEECCE
Confidence            47899999999 99999999999999888888887765333 66666665544343 3343333

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes

>PRK06834 hypothetical protein; Provisional

Probab=96.59  E-value=0.021  Score=61.68  Aligned_cols=34  Identities=12%  Similarity=-0.125  Sum_probs=31.4

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSH  122 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~  122 (535)
                      .+|+|||+|++|+.+|+.+...+.+|+|+|+.+.
T Consensus         4 ~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~   37 (488)
T PRK06834          4 HAVVIAGGGPTGLMLAGELALAGVDVAIVERRPN   37 (488)
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            5789999999999999998889999999999874

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=96.54  E-value=0.1  Score=56.11  Aligned_cols=62  Identities=15%  Similarity=0.009  Sum_probs=42.3

Q ss_pred             HHHHHHHHHhhh-cCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCC
Q psy14461        281 QEMVRILLSSLT-KAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKF  342 (535)
Q Consensus       281 ~~~~~~~~~~l~-~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p  342 (535)
                      ..+.+.+.+.+. ..|+++ .++.|+.++..+++.+.+.+..+.+|+..++.+|.||+|.|.-.
T Consensus       184 ~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS  247 (497)
T PRK13339        184 GALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGA  247 (497)
T ss_pred             HHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcch
Confidence            345566666664 458999 99999999865345566654322345323589999999999755

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=96.54  E-value=0.033  Score=58.04  Aligned_cols=89  Identities=13%  Similarity=0.060  Sum_probs=59.4

Q ss_pred             hhhcC-CeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeec-C-CCceEcC
Q psy14461        290 SLTKA-GVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIK-K-KSYVVCN  365 (535)
Q Consensus       290 ~l~~~-gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~-~-~G~i~vd  365 (535)
                      .+.+. |+++ ++++|++|+..+++...|.+.+..+|+..++.+++|++..|-..- .++  .++|+.-. . .|+.+--
T Consensus       190 ~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL-~LL--qksgi~e~~gyggfPVsG  266 (488)
T PF06039_consen  190 YLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGAL-PLL--QKSGIPEGKGYGGFPVSG  266 (488)
T ss_pred             HHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhH-HHH--HHcCChhhcccCCCcccc
Confidence            34444 8999 999999999987777888876656777789999999999886532 122  55555321 1 3444334


Q ss_pred             CCCCcCCC--------CEEEeCCc
Q psy14461        366 EKDQTSVG--------NIFAVGGI  381 (535)
Q Consensus       366 ~~~~T~~~--------~IyA~GD~  381 (535)
                      .+++++.|        .||..-.+
T Consensus       267 ~fl~~~n~~vv~~H~aKVYgka~v  290 (488)
T PF06039_consen  267 QFLRCKNPEVVAQHNAKVYGKASV  290 (488)
T ss_pred             eEEecCCHHHHHHhcceeeeeCCC
Confidence            56666544        46766554

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=96.53  E-value=0.017  Score=60.40  Aligned_cols=95  Identities=12%  Similarity=0.082  Sum_probs=66.7

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHH
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRF  167 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  167 (535)
                      ..+++++|+|+.|+.+|......+.+|+++|+.+.+...                                 +..     
T Consensus       136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~---------------------------------~~~-----  177 (415)
T COG0446         136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQ---------------------------------LLD-----  177 (415)
T ss_pred             cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchh---------------------------------hhh-----
Confidence            357899999999999999998899999999999865211                                 000     


Q ss_pred             HHHHHHHHHHHHHhcCcEEEEeEE-EEecCC--E------EEEceeEEEcceEEEeeCceecC
Q psy14461        168 CIRAKNDSMRELKALGIDIVRTAA-AFTNPH--T------IKLSNRSVTGFNFLLAVERRCLP  221 (535)
Q Consensus       168 ~~~~~~~~~~~~~~~gV~~~~g~~-~~~~~~--~------v~~~~~~~~~d~lViATGs~p~~  221 (535)
                       ..+...+...++..||+++.+.. ..++.+  .      +......+.+|.+++++|.+|..
T Consensus       178 -~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~~  239 (415)
T COG0446         178 -PEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERPNV  239 (415)
T ss_pred             -HHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeecccccH
Confidence             11222344778888999887753 223322  1      22233789999999999999954

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=96.46  E-value=0.08  Score=56.76  Aligned_cols=59  Identities=22%  Similarity=0.236  Sum_probs=46.3

Q ss_pred             HHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCC
Q psy14461        281 QEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEK  340 (535)
Q Consensus       281 ~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~  340 (535)
                      ..+.-.+.....++|-++ +.++|+.+..+ ++..-|+.++..+|++.++.++.|+.|+|.
T Consensus       164 aRLv~~~a~~A~~~Ga~il~~~~v~~~~re-~~v~gV~~~D~~tg~~~~ira~~VVNAaGp  223 (532)
T COG0578         164 ARLVAANARDAAEHGAEILTYTRVESLRRE-GGVWGVEVEDRETGETYEIRARAVVNAAGP  223 (532)
T ss_pred             HHHHHHHHHHHHhcccchhhcceeeeeeec-CCEEEEEEEecCCCcEEEEEcCEEEECCCc
Confidence            345555556667889999 99999999886 454467777666788889999999999995

>PRK07190 hypothetical protein; Provisional

Probab=96.45  E-value=0.021  Score=61.60  Aligned_cols=34  Identities=12%  Similarity=-0.037  Sum_probs=31.3

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSH  122 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~  122 (535)
                      .+|+|||+||+|+.+|+.+...+.+|+|+|+.+.
T Consensus         6 ~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~   39 (487)
T PRK07190          6 TDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDG   39 (487)
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence            6899999999999999988888999999999874

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=96.41  E-value=0.016  Score=55.83  Aligned_cols=99  Identities=19%  Similarity=0.188  Sum_probs=66.5

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCc----------cC----------cHHHHH----------------
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLK----------HF----------DQEMVR----------------  285 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~----------~~----------~~~~~~----------------  285 (535)
                      +|+|||+|..|+-+|..|+..|.+||++++ .-+..          .+          ++-+.+                
T Consensus         3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W~~   82 (331)
T COG3380           3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVWTP   82 (331)
T ss_pred             cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceeeccc
Confidence            599999999999999999999999999987 32210          01          111111                


Q ss_pred             --------------------------HHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEcc
Q psy14461        286 --------------------------ILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAM  338 (535)
Q Consensus       286 --------------------------~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~  338 (535)
                                                .+.+.| ....++ ++++|+++... ++..+++.+   +|. ....+|.|++++
T Consensus        83 ~~~~~~~~~~~~~~d~~pyvg~pgmsalak~L-AtdL~V~~~~rVt~v~~~-~~~W~l~~~---~g~-~~~~~d~vvla~  156 (331)
T COG3380          83 AVWTFTGDGSPPRGDEDPYVGEPGMSALAKFL-ATDLTVVLETRVTEVART-DNDWTLHTD---DGT-RHTQFDDVVLAI  156 (331)
T ss_pred             cccccccCCCCCCCCCCccccCcchHHHHHHH-hccchhhhhhhhhhheec-CCeeEEEec---CCC-cccccceEEEec
Confidence                                      111222 234678 88999998876 567788874   343 268899999998


Q ss_pred             CCCCCCCCC
Q psy14461        339 EKKFDFAAL  347 (535)
Q Consensus       339 G~~p~~~~l  347 (535)
                      .......+|
T Consensus       157 PAPQ~~~LL  165 (331)
T COG3380         157 PAPQTATLL  165 (331)
T ss_pred             CCCcchhhc
Confidence            644333333

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.40  E-value=0.0086  Score=59.49  Aligned_cols=97  Identities=18%  Similarity=0.118  Sum_probs=76.0

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEE-Ec--CcCCc------------cCcHHHHHHHHHhhhcCCeEE-cceEE
Q psy14461        240 WPGKTLVLGGSLMAVEIAATLNFLGVPVTLV-YS--RRLLK------------HFDQEMVRILLSSLTKAGVSI-QCCVI  303 (535)
Q Consensus       240 ~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv-~~--~~~l~------------~~~~~~~~~~~~~l~~~gV~i-~~~~v  303 (535)
                      .+-.|+|||||+.|.-+|.+.+|.|.+.-++ +|  .+.+.            ...+.+...+++..++..|++ ...+.
T Consensus       210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aerfGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDimn~qra  289 (520)
T COG3634         210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQYDVDVMNLQRA  289 (520)
T ss_pred             CCceEEEEcCCcchhHHHHHHHhhcchhhhhhhhhCCeeccccchhheeccccccchHHHHHHHHHHhhcCchhhhhhhh
Confidence            3568999999999999999999998765444 22  22221            346888999999999999999 88888


Q ss_pred             EEEEEe--CCCcEEEEEecCCCCCceEEEcCEEEEccCCC
Q psy14461        304 EKVISS--FDGMKGVRGFHPESKEPFADVFKTVVNAMEKK  341 (535)
Q Consensus       304 ~~i~~~--~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~  341 (535)
                      +++++.  +++...|+++   +|.  .+++..+|++||.+
T Consensus       290 ~~l~~a~~~~~l~ev~l~---nGa--vLkaktvIlstGAr  324 (520)
T COG3634         290 SKLEPAAVEGGLIEVELA---NGA--VLKARTVILATGAR  324 (520)
T ss_pred             hcceecCCCCccEEEEec---CCc--eeccceEEEecCcc
Confidence            888763  2345678885   788  89999999999976

>PRK08244 hypothetical protein; Provisional

Probab=96.38  E-value=0.017  Score=62.56  Aligned_cols=34  Identities=15%  Similarity=-0.044  Sum_probs=31.3

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSH  122 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~  122 (535)
                      ++|+|||+||+|+.+|+.+...+.+|+|+|+.+.
T Consensus         3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~   36 (493)
T PRK08244          3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLKE   36 (493)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            4789999999999999999889999999999864

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.38  E-value=0.048  Score=59.98  Aligned_cols=50  Identities=14%  Similarity=0.077  Sum_probs=34.6

Q ss_pred             hhhcCCeEE-cceEEEEEEEeCCCcEE-EEEecCCCCCceEEEcCEEEEccCC
Q psy14461        290 SLTKAGVSI-QCCVIEKVISSFDGMKG-VRGFHPESKEPFADVFKTVVNAMEK  340 (535)
Q Consensus       290 ~l~~~gV~i-~~~~v~~i~~~~~~~~~-v~~~~~~~G~~~~~~~D~vi~a~G~  340 (535)
                      .+.+.||++ .++.++++..+ ++++. |...+..+|+...+.++.||+|||-
T Consensus       145 ~~~~~gv~i~~~~~~~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG  196 (566)
T PRK06452        145 RTSGLNVDFYNEWFSLDLVTD-NKKVVGIVAMQMKTLTPFFFKTKAVVLATGG  196 (566)
T ss_pred             HHHhCCCEEEeCcEEEEEEEE-CCEEEEEEEEECCCCeEEEEEeCeEEECCCc
Confidence            344567888 88888888765 46553 4443323555567899999999983

>PRK07846 mycothione reductase; Reviewed

Probab=96.37  E-value=0.023  Score=60.74  Aligned_cols=92  Identities=14%  Similarity=-0.035  Sum_probs=60.0

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRFC  168 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  168 (535)
                      .+++|||+|+.|+..|......+.+|+|+++.+.+      ++..                      +.+ +.+.     
T Consensus       167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l------l~~~----------------------d~~-~~~~-----  212 (451)
T PRK07846        167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRL------LRHL----------------------DDD-ISER-----  212 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcc------cccc----------------------CHH-HHHH-----
Confidence            46899999999999887777788999999998754      1111                      111 1111     


Q ss_pred             HHHHHHHHHHHHhcCcEEEEeE-EEEec--CCE--EEEc-eeEEEcceEEEeeCceecC
Q psy14461        169 IRAKNDSMRELKALGIDIVRTA-AAFTN--PHT--IKLS-NRSVTGFNFLLAVERRCLP  221 (535)
Q Consensus       169 ~~~~~~~~~~~~~~gV~~~~g~-~~~~~--~~~--v~~~-~~~~~~d~lViATGs~p~~  221 (535)
                            +...+ +.+|+++.+. +...+  +..  +.+. +.++.+|.|++|+|.+|..
T Consensus       213 ------l~~l~-~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~  264 (451)
T PRK07846        213 ------FTELA-SKRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVPNG  264 (451)
T ss_pred             ------HHHHH-hcCeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECCccCc
Confidence                  11222 3578887664 32222  223  3333 3679999999999999977

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=96.37  E-value=0.2  Score=52.67  Aligned_cols=53  Identities=23%  Similarity=0.161  Sum_probs=37.3

Q ss_pred             HHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcE-EEEEecCCCCCceEEEcCEEEEccCC
Q psy14461        282 EMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMK-GVRGFHPESKEPFADVFKTVVNAMEK  340 (535)
Q Consensus       282 ~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~-~v~~~~~~~G~~~~~~~D~vi~a~G~  340 (535)
                      .+...+.+.+.+.|+++ .++.|++++..+++.+ .|+.   .+|   ++.+|.|++|+|-
T Consensus       184 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t---~~g---~i~a~~vVvaagg  238 (407)
T TIGR01373       184 AVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVET---TRG---FIGAKKVGVAVAG  238 (407)
T ss_pred             HHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEe---CCc---eEECCEEEECCCh
Confidence            44555667778899999 9999999975423443 3444   355   5899998888764

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PRK10329 glutaredoxin-like protein; Provisional

Probab=96.37  E-value=0.0084  Score=47.62  Aligned_cols=33  Identities=27%  Similarity=0.440  Sum_probs=28.4

Q ss_pred             cEEEEeCCCchhhHHHHHHHHHhcCCcceEEEEE
Q psy14461         59 RILIFTHAVLREENARAERYLNARGDRFAVLYLD   92 (535)
Q Consensus        59 ~v~v~~k~~cp~~~~~~k~~~~~~~~~~~~~~v~   92 (535)
                      +|.+|++++|| +|.+++.++.+.|..++.+++.
T Consensus         2 ~v~lYt~~~Cp-~C~~ak~~L~~~gI~~~~idi~   34 (81)
T PRK10329          2 RITIYTRNDCV-QCHATKRAMESRGFDFEMINVD   34 (81)
T ss_pred             EEEEEeCCCCH-hHHHHHHHHHHCCCceEEEECC
Confidence            57899999999 9999999999999887655544

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=96.35  E-value=0.043  Score=60.79  Aligned_cols=30  Identities=33%  Similarity=0.315  Sum_probs=27.9

Q ss_pred             EEEECCChHHHHHHHHHHhCCCcEEEEEc-C
Q psy14461        244 TLVLGGSLMAVEIAATLNFLGVPVTLVYS-R  273 (535)
Q Consensus       244 vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~  273 (535)
                      |+|||+|..|+-+|..+++.|.+|.|+++ .
T Consensus         1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~   31 (603)
T TIGR01811         1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVD   31 (603)
T ss_pred             CEEECccHHHHHHHHHHHHcCCCEEEEEecC
Confidence            68999999999999999999999999987 5

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=96.35  E-value=0.027  Score=58.45  Aligned_cols=35  Identities=17%  Similarity=-0.027  Sum_probs=29.6

Q ss_pred             EEEeeCCccHHHHHHHHHhhC--CCeEEEEecCCccc
Q psy14461         90 YLDRIGDEGILLEEELKRQTN--QRRDELQERGSHLS  124 (535)
Q Consensus        90 ~v~iiG~G~aG~~~al~~~~~--~~~V~lie~~~~~~  124 (535)
                      +|+|||+|++|+..|......  +.+|+|+|+.+.++
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~   37 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIG   37 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCC
Confidence            579999999999999877654  89999999987543

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=96.34  E-value=0.0061  Score=46.66  Aligned_cols=31  Identities=26%  Similarity=0.298  Sum_probs=27.9

Q ss_pred             EECCChHHHHHHHHHHhCCCcEEEEEc-CcCC
Q psy14461        246 VLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL  276 (535)
Q Consensus       246 ViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l  276 (535)
                      |||+|.+|+-+|..|++.|.+|+|+++ +.+-
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~G   32 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLG   32 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCcccC
Confidence            899999999999999999999999999 7654

...

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=96.33  E-value=0.047  Score=60.12  Aligned_cols=30  Identities=13%  Similarity=0.307  Sum_probs=28.2

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      .|+|||+|..|+-+|..+++.|.+|+|+++
T Consensus         1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK   30 (566)
T TIGR01812         1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISK   30 (566)
T ss_pred             CEEEECccHHHHHHHHHHHHCCCcEEEEec
Confidence            489999999999999999999999999987

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=96.32  E-value=0.011  Score=62.42  Aligned_cols=94  Identities=19%  Similarity=0.166  Sum_probs=62.0

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc--CcCC--c---c---------------C--------------------
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS--RRLL--K---H---------------F--------------------  279 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~--~~~l--~---~---------------~--------------------  279 (535)
                      -.|+|||||..|+|+|.+.+|.|+++.+++.  +.+.  +   .               +                    
T Consensus         5 ~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~LN~   84 (621)
T COG0445           5 YDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRMLNS   84 (621)
T ss_pred             CceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhccC
Confidence            3699999999999999999999999998865  3221  0   0               0                    


Q ss_pred             -------------cH-HHHHHHHHhhh-cCCeEEcceEEEEEEEeCCCcE-EEEEecCCCCCceEEEcCEEEEccCC
Q psy14461        280 -------------DQ-EMVRILLSSLT-KAGVSIQCCVIEKVISSFDGMK-GVRGFHPESKEPFADVFKTVVNAMEK  340 (535)
Q Consensus       280 -------------~~-~~~~~~~~~l~-~~gV~i~~~~v~~i~~~~~~~~-~v~~~~~~~G~~~~~~~D~vi~a~G~  340 (535)
                                   |. .+...+++.++ ..++.+....|.++.-.++.++ -|.+   .+|.  .+.++.|+++||.
T Consensus        85 sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~~v~dli~e~~~~v~GV~t---~~G~--~~~a~aVVlTTGT  156 (621)
T COG0445          85 SKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQGEVEDLIVEEGQRVVGVVT---ADGP--EFHAKAVVLTTGT  156 (621)
T ss_pred             CCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHhhhHHHhhcCCCeEEEEEe---CCCC--eeecCEEEEeecc
Confidence                         11 12233334443 3577775556666654422223 3554   4788  8999999999994

>PRK08275 putative oxidoreductase; Provisional

Probab=96.29  E-value=0.056  Score=59.37  Aligned_cols=59  Identities=20%  Similarity=0.220  Sum_probs=39.6

Q ss_pred             HHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEE-EEEecCCCCCceEEEcCEEEEccCCCC
Q psy14461        284 VRILLSSLTKAGVSI-QCCVIEKVISSFDGMKG-VRGFHPESKEPFADVFKTVVNAMEKKF  342 (535)
Q Consensus       284 ~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~-v~~~~~~~G~~~~~~~D~vi~a~G~~p  342 (535)
                      .+.+.+.+++.||++ .++.++++..++++++. +...+..+|+...+.++.||+|+|-..
T Consensus       140 ~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~  200 (554)
T PRK08275        140 KKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAG  200 (554)
T ss_pred             HHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCcc
Confidence            344455566678999 99999998764234432 333222366655789999999999754

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.25  E-value=0.03  Score=60.31  Aligned_cols=76  Identities=12%  Similarity=-0.079  Sum_probs=54.2

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRFC  168 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  168 (535)
                      .++.|+|+|++|+.+|..+...+.+|+++|+.+..                                    ...      
T Consensus        17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~------------------------------------~~~------   54 (480)
T PRK01438         17 LRVVVAGLGVSGFAAADALLELGARVTVVDDGDDE------------------------------------RHR------   54 (480)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchh------------------------------------hhH------
Confidence            46799999999999988777888999999976411                                    000      


Q ss_pred             HHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEceeEEEcceEEEeeCceecC
Q psy14461        169 IRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAVERRCLP  221 (535)
Q Consensus       169 ~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~~~~~~d~lViATGs~p~~  221 (535)
                           .....+++.||+++.+....          ....+|.||+++|..|..
T Consensus        55 -----~~~~~l~~~gv~~~~~~~~~----------~~~~~D~Vv~s~Gi~~~~   92 (480)
T PRK01438         55 -----ALAAILEALGATVRLGPGPT----------LPEDTDLVVTSPGWRPDA   92 (480)
T ss_pred             -----HHHHHHHHcCCEEEECCCcc----------ccCCCCEEEECCCcCCCC
Confidence                 01234666799987764211          135699999999998876

>PRK10638 glutaredoxin 3; Provisional

Probab=96.21  E-value=0.017  Score=45.98  Aligned_cols=51  Identities=24%  Similarity=0.356  Sum_probs=37.2

Q ss_pred             cEEEEeCCCchhhHHHHHHHHHhcCCcceEEEEEeeCCccHHHHHHHHHhhCCCeE
Q psy14461         59 RILIFTHAVLREENARAERYLNARGDRFAVLYLDRIGDEGILLEEELKRQTNQRRD  114 (535)
Q Consensus        59 ~v~v~~k~~cp~~~~~~k~~~~~~~~~~~~~~v~iiG~G~aG~~~al~~~~~~~~V  114 (535)
                      +|.+|+++.|| +|.+++.++.+.+.+++.+++.   ..+. ....+.+..+..+|
T Consensus         3 ~v~ly~~~~Cp-~C~~a~~~L~~~gi~y~~~dv~---~~~~-~~~~l~~~~g~~~v   53 (83)
T PRK10638          3 NVEIYTKATCP-FCHRAKALLNSKGVSFQEIPID---GDAA-KREEMIKRSGRTTV   53 (83)
T ss_pred             cEEEEECCCCh-hHHHHHHHHHHcCCCcEEEECC---CCHH-HHHHHHHHhCCCCc
Confidence            58899999999 9999999999999887665553   2233 44556555555443

>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria

Probab=96.17  E-value=0.0071  Score=46.69  Aligned_cols=33  Identities=24%  Similarity=0.255  Sum_probs=28.8

Q ss_pred             cEEEEeCCCchhhHHHHHHHHHhcCCcceEEEEE
Q psy14461         59 RILIFTHAVLREENARAERYLNARGDRFAVLYLD   92 (535)
Q Consensus        59 ~v~v~~k~~cp~~~~~~k~~~~~~~~~~~~~~v~   92 (535)
                      +|.+|+++.|| +|.++++++.+.+.++..+++.
T Consensus         2 ~v~lys~~~Cp-~C~~ak~~L~~~~i~~~~~~v~   34 (72)
T cd03029           2 SVSLFTKPGCP-FCARAKAALQENGISYEEIPLG   34 (72)
T ss_pred             eEEEEECCCCH-HHHHHHHHHHHcCCCcEEEECC
Confidence            58899999999 9999999999999887666544

PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.

>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions

Probab=96.17  E-value=0.021  Score=44.24  Aligned_cols=50  Identities=16%  Similarity=0.232  Sum_probs=36.6

Q ss_pred             cEEEEeCCCchhhHHHHHHHHHhcCCcceEEEEEeeCCccHHHHHHHHHhhCCCe
Q psy14461         59 RILIFTHAVLREENARAERYLNARGDRFAVLYLDRIGDEGILLEEELKRQTNQRR  113 (535)
Q Consensus        59 ~v~v~~k~~cp~~~~~~k~~~~~~~~~~~~~~v~iiG~G~aG~~~al~~~~~~~~  113 (535)
                      +|.+|+++.|| +|.+++.++.+.+.+++.+++.  .. +. ....+....+..+
T Consensus         2 ~v~ly~~~~C~-~C~ka~~~L~~~gi~~~~~di~--~~-~~-~~~el~~~~g~~~   51 (73)
T cd03027           2 RVTIYSRLGCE-DCTAVRLFLREKGLPYVEINID--IF-PE-RKAELEERTGSSV   51 (73)
T ss_pred             EEEEEecCCCh-hHHHHHHHHHHCCCceEEEECC--CC-HH-HHHHHHHHhCCCC
Confidence            68899999999 9999999999999887655543  22 33 4556665555433

GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.16  E-value=0.067  Score=59.69  Aligned_cols=50  Identities=14%  Similarity=0.072  Sum_probs=35.3

Q ss_pred             hhhcCCeEE-cceEEEEEEEeCCCcEE-EEEecCCCCCceEEEcCEEEEccCC
Q psy14461        290 SLTKAGVSI-QCCVIEKVISSFDGMKG-VRGFHPESKEPFADVFKTVVNAMEK  340 (535)
Q Consensus       290 ~l~~~gV~i-~~~~v~~i~~~~~~~~~-v~~~~~~~G~~~~~~~D~vi~a~G~  340 (535)
                      .+++.||++ .++.++++..+ ++++. |...+..+|+...+.++.||+|||-
T Consensus       179 ~~~~~gV~i~~~t~v~~Li~d-~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG  230 (640)
T PRK07573        179 QIAAGTVKMYTRTEMLDLVVV-DGRARGIVARNLVTGEIERHTADAVVLATGG  230 (640)
T ss_pred             HHHhcCCEEEeceEEEEEEEe-CCEEEEEEEEECCCCcEEEEECCEEEECCCC
Confidence            345678999 99999998765 45543 4443323566567899999999985

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=96.10  E-value=0.074  Score=59.01  Aligned_cols=31  Identities=19%  Similarity=0.274  Sum_probs=27.7

Q ss_pred             CcEEEECCChHHHHHHHHHHhC--CCcEEEEEc
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFL--GVPVTLVYS  272 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~--g~~Vtlv~~  272 (535)
                      -.|+|||+|..|+-+|..+++.  |.+|.++++
T Consensus        12 ~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK   44 (608)
T PRK06854         12 TDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEK   44 (608)
T ss_pred             eCEEEECcCHHHHHHHHHHHHhCCCCeEEEEEC
Confidence            3699999999999999999888  899999987

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=96.07  E-value=0.0069  Score=56.84  Aligned_cols=40  Identities=10%  Similarity=-0.101  Sum_probs=31.7

Q ss_pred             eEEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccc
Q psy14461         87 AVLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFR  126 (535)
Q Consensus        87 ~~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~  126 (535)
                      ..+|++|+|+||+|+.+|..+...+.+|++||++..+++.
T Consensus        16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg   55 (230)
T PF01946_consen   16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGG   55 (230)
T ss_dssp             TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTT
T ss_pred             ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCcc
Confidence            3578999999999999999998899999999999876543

>PRK09077 L-aspartate oxidase; Provisional

Probab=96.04  E-value=0.25  Score=54.05  Aligned_cols=34  Identities=21%  Similarity=0.160  Sum_probs=30.0

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHL  123 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~  123 (535)
                      .+|+|||+|.||+.+|+..... .+|+|+||....
T Consensus         9 ~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~   42 (536)
T PRK09077          9 CDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLS   42 (536)
T ss_pred             CCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCC
Confidence            5899999999999999988765 799999998754

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=96.02  E-value=0.048  Score=60.71  Aligned_cols=34  Identities=21%  Similarity=-0.015  Sum_probs=28.9

Q ss_pred             EEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcc
Q psy14461         90 YLDRIGDEGILLEEELKRQTNQRRDELQERGSHL  123 (535)
Q Consensus        90 ~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~  123 (535)
                      +++|||+|..|+..|......+.+|+|+|+.+.+
T Consensus       314 ~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~l  347 (659)
T PTZ00153        314 YMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQL  347 (659)
T ss_pred             ceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcc
Confidence            5799999999998887666678899999998754

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.01  E-value=0.086  Score=57.75  Aligned_cols=55  Identities=20%  Similarity=0.128  Sum_probs=37.0

Q ss_pred             HHHhhhcCCeEE-cceEEEEEEEeCCCcE-EEEEecCCCCCceEEEcCEEEEccCCC
Q psy14461        287 LLSSLTKAGVSI-QCCVIEKVISSFDGMK-GVRGFHPESKEPFADVFKTVVNAMEKK  341 (535)
Q Consensus       287 ~~~~l~~~gV~i-~~~~v~~i~~~~~~~~-~v~~~~~~~G~~~~~~~D~vi~a~G~~  341 (535)
                      +.+.+++.||++ .++.++++..++++++ -+...+..+|+...+.++.||+|||--
T Consensus       140 L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~  196 (543)
T PRK06263        140 LMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGA  196 (543)
T ss_pred             HHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCC
Confidence            444455678999 9999999876533323 233332236765678999999999853

>TIGR00551 nadB L-aspartate oxidase

Probab=95.99  E-value=0.086  Score=56.91  Aligned_cols=54  Identities=13%  Similarity=-0.013  Sum_probs=36.5

Q ss_pred             HHHhhhc-CCeEE-cceEEEEEEEeCCCcEE-EEEecCCCCCceEEEcCEEEEccCCCCC
Q psy14461        287 LLSSLTK-AGVSI-QCCVIEKVISSFDGMKG-VRGFHPESKEPFADVFKTVVNAMEKKFD  343 (535)
Q Consensus       287 ~~~~l~~-~gV~i-~~~~v~~i~~~~~~~~~-v~~~~~~~G~~~~~~~D~vi~a~G~~p~  343 (535)
                      +.+.+++ .||++ .++.++++..+ ++.+. +...+  .++...+.++.||+|+|-...
T Consensus       134 L~~~~~~~~gi~i~~~~~v~~l~~~-~g~v~Gv~~~~--~~~~~~i~A~~VVlAtGG~~~  190 (488)
T TIGR00551       134 LVKKALNHPNIRIIEGENALDLLIE-TGRVVGVWVWN--RETVETCHADAVVLATGGAGK  190 (488)
T ss_pred             HHHHHHhcCCcEEEECeEeeeeecc-CCEEEEEEEEE--CCcEEEEEcCEEEECCCcccC
Confidence            3344444 58999 99999998765 45443 54442  243347899999999997544

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=95.98  E-value=0.089  Score=58.26  Aligned_cols=54  Identities=13%  Similarity=-0.068  Sum_probs=36.3

Q ss_pred             HhhhcCCeEE-cceEEEEEEEeCCCcEE-EEEecCCCCCceEEEcCEEEEccCCCC
Q psy14461        289 SSLTKAGVSI-QCCVIEKVISSFDGMKG-VRGFHPESKEPFADVFKTVVNAMEKKF  342 (535)
Q Consensus       289 ~~l~~~gV~i-~~~~v~~i~~~~~~~~~-v~~~~~~~G~~~~~~~D~vi~a~G~~p  342 (535)
                      +.+++.||++ .++.++++..++++++. |...+..+|+...+.++.||+|||--.
T Consensus       157 ~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~  212 (598)
T PRK09078        157 QQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYG  212 (598)
T ss_pred             HHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCc
Confidence            3345578899 89999988754234443 443222467666889999999998543

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=95.95  E-value=0.011  Score=60.22  Aligned_cols=36  Identities=14%  Similarity=0.027  Sum_probs=30.9

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLS  124 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~  124 (535)
                      ++|+|||+|++|+.+|+.+...+.+|+|||+.+...
T Consensus         2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~   37 (356)
T PF01494_consen    2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPR   37 (356)
T ss_dssp             EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCC
T ss_pred             ceEEEECCCHHHHHHHHHHHhcccccccchhccccc
Confidence            689999999999999999999999999999987543

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=95.94  E-value=0.021  Score=65.05  Aligned_cols=34  Identities=18%  Similarity=0.023  Sum_probs=29.6

Q ss_pred             EEEEeeCCccHHHHHHHHHhhC--CCeEEEEecCCc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTN--QRRDELQERGSH  122 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~--~~~V~lie~~~~  122 (535)
                      ++|+|||+|++|+.+|+.+...  +.+|+|+|+.+.
T Consensus         1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~   36 (765)
T PRK08255          1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP   36 (765)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence            3689999999999999877665  799999999875

>TIGR03452 mycothione_red mycothione reductase

Probab=95.94  E-value=0.051  Score=58.05  Aligned_cols=92  Identities=16%  Similarity=-0.006  Sum_probs=59.2

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRFC  168 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  168 (535)
                      .+++|||+|+.|+..|......+.+|+|+++.+.+      ++..                      +. ++...     
T Consensus       170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~l------l~~~----------------------d~-~~~~~-----  215 (452)
T TIGR03452       170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKL------LRHL----------------------DE-DISDR-----  215 (452)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc------cccc----------------------CH-HHHHH-----
Confidence            46799999999999887777778899999987743      1111                      11 11111     


Q ss_pred             HHHHHHHHHHHHhcCcEEEEeE-EEEe--cCCEEE--Ec-eeEEEcceEEEeeCceecC
Q psy14461        169 IRAKNDSMRELKALGIDIVRTA-AAFT--NPHTIK--LS-NRSVTGFNFLLAVERRCLP  221 (535)
Q Consensus       169 ~~~~~~~~~~~~~~gV~~~~g~-~~~~--~~~~v~--~~-~~~~~~d~lViATGs~p~~  221 (535)
                            +...+ ..+|+++.+. +..+  ++..+.  +. +.++.+|.|++|+|.+|..
T Consensus       216 ------l~~~~-~~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~  267 (452)
T TIGR03452       216 ------FTEIA-KKKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPNG  267 (452)
T ss_pred             ------HHHHH-hcCCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeeccCcCC
Confidence                  11222 3578888663 2222  223333  32 3579999999999999977

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=95.92  E-value=0.029  Score=43.44  Aligned_cols=47  Identities=23%  Similarity=0.378  Sum_probs=34.0

Q ss_pred             cEEEEeCCCchhhHHHHHHHHHhcCCcceEEEEEeeCCccHHHHHHHHHhhC
Q psy14461         59 RILIFTHAVLREENARAERYLNARGDRFAVLYLDRIGDEGILLEEELKRQTN  110 (535)
Q Consensus        59 ~v~v~~k~~cp~~~~~~k~~~~~~~~~~~~~~v~iiG~G~aG~~~al~~~~~  110 (535)
                      +|.+|+++.|| +|.+++.++.+.+.++..+++.-  . +. ...++....+
T Consensus         1 ~i~ly~~~~Cp-~C~~ak~~L~~~~i~~~~i~i~~--~-~~-~~~~~~~~~~   47 (75)
T cd03418           1 KVEIYTKPNCP-YCVRAKALLDKKGVDYEEIDVDG--D-PA-LREEMINRSG   47 (75)
T ss_pred             CEEEEeCCCCh-HHHHHHHHHHHCCCcEEEEECCC--C-HH-HHHHHHHHhC
Confidence            47899999999 99999999999998876655542  2 33 4445544433

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=95.90  E-value=0.098  Score=58.13  Aligned_cols=52  Identities=15%  Similarity=-0.083  Sum_probs=34.6

Q ss_pred             hhhcCCeEE-cceEEEEEEEeCCCcEE-EEEecCCCCCceEEEcCEEEEccCCC
Q psy14461        290 SLTKAGVSI-QCCVIEKVISSFDGMKG-VRGFHPESKEPFADVFKTVVNAMEKK  341 (535)
Q Consensus       290 ~l~~~gV~i-~~~~v~~i~~~~~~~~~-v~~~~~~~G~~~~~~~D~vi~a~G~~  341 (535)
                      ..++.||++ .++.++++..++++++. |...+..+|+...+.++.||+|||--
T Consensus       175 ~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~  228 (617)
T PTZ00139        175 QSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGY  228 (617)
T ss_pred             HHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCC
Confidence            344567888 88888887652245443 43322246776788999999999743

>TIGR02183 GRXA Glutaredoxin, GrxA family

Probab=95.88  E-value=0.032  Score=44.82  Aligned_cols=36  Identities=19%  Similarity=0.265  Sum_probs=27.6

Q ss_pred             EEEEeCCCchhhHHHHHHHHHhcCCc---ceEEEEEeeCC
Q psy14461         60 ILIFTHAVLREENARAERYLNARGDR---FAVLYLDRIGD   96 (535)
Q Consensus        60 v~v~~k~~cp~~~~~~k~~~~~~~~~---~~~~~v~iiG~   96 (535)
                      |.+|++++|| +|.++++++.+.+.+   +.+..++|-..
T Consensus         2 V~vys~~~Cp-~C~~ak~~L~~~~~~~~~i~~~~idi~~~   40 (86)
T TIGR02183         2 VVIFGRPGCP-YCVRAKQLAEKLAIERADFEFRYIDIHAE   40 (86)
T ss_pred             EEEEeCCCCc-cHHHHHHHHHHhCcccCCCcEEEEECCCC
Confidence            6789999999 999999999987532   34455565554

This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.

>PRK06175 L-aspartate oxidase; Provisional

Probab=95.87  E-value=0.085  Score=56.01  Aligned_cols=54  Identities=20%  Similarity=0.271  Sum_probs=35.6

Q ss_pred             HHHHhhhc-CCeEE-cceEEEEEEEeCCCcE-EEEEecCCCCCceEEEcCEEEEccCCCC
Q psy14461        286 ILLSSLTK-AGVSI-QCCVIEKVISSFDGMK-GVRGFHPESKEPFADVFKTVVNAMEKKF  342 (535)
Q Consensus       286 ~~~~~l~~-~gV~i-~~~~v~~i~~~~~~~~-~v~~~~~~~G~~~~~~~D~vi~a~G~~p  342 (535)
                      .+.+.+++ .||++ .++.++++..+ ++++ -|....  +|+...+.++.||+|+|--.
T Consensus       133 ~L~~~~~~~~gV~i~~~t~v~~Li~~-~~~v~Gv~~~~--~g~~~~i~Ak~VILAtGG~~  189 (433)
T PRK06175        133 ILLKKVKKRKNITIIENCYLVDIIEN-DNTCIGAICLK--DNKQINIYSKVTILATGGIG  189 (433)
T ss_pred             HHHHHHHhcCCCEEEECcEeeeeEec-CCEEEEEEEEE--CCcEEEEEcCeEEEccCccc
Confidence            34444443 58999 99999998754 3443 233222  45544689999999999643

>TIGR02180 GRX_euk Glutaredoxin

Probab=95.84  E-value=0.023  Score=44.98  Aligned_cols=50  Identities=18%  Similarity=0.341  Sum_probs=37.3

Q ss_pred             EEEEeCCCchhhHHHHHHHHHhcCCc--ceEEEEEeeCCccHHHHHHHHHhhCC
Q psy14461         60 ILIFTHAVLREENARAERYLNARGDR--FAVLYLDRIGDEGILLEEELKRQTNQ  111 (535)
Q Consensus        60 v~v~~k~~cp~~~~~~k~~~~~~~~~--~~~~~v~iiG~G~aG~~~al~~~~~~  111 (535)
                      |++|++.+|| +|.++++++.+.+.+  +..+++.....+.. +..++....+.
T Consensus         1 V~~f~~~~Cp-~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~-~~~~l~~~~g~   52 (84)
T TIGR02180         1 VVVFSKSYCP-YCKKAKEILAKLNVKPAYEVVELDQLSNGSE-IQDYLEEITGQ   52 (84)
T ss_pred             CEEEECCCCh-hHHHHHHHHHHcCCCCCCEEEEeeCCCChHH-HHHHHHHHhCC
Confidence            5689999999 999999999998876  66777776655333 66666555443

This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=95.83  E-value=0.12  Score=57.61  Aligned_cols=30  Identities=20%  Similarity=0.264  Sum_probs=26.0

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      .|+|||+|..|+-+|..+++.|.+|+++++
T Consensus        10 DVvVIG~G~AGl~AAl~Aae~G~~V~lieK   39 (626)
T PRK07803         10 DVVVIGAGGAGLRAAIEARERGLRVAVVCK   39 (626)
T ss_pred             cEEEECcCHHHHHHHHHHHHCCCCEEEEec
Confidence            688999999998888888888888888876

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=95.83  E-value=0.13  Score=57.22  Aligned_cols=31  Identities=29%  Similarity=0.320  Sum_probs=27.1

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      -.|+|||||.+|+-+|..|+++|.+|+++++
T Consensus        72 ~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~  102 (627)
T PLN02464         72 LDVLVVGGGATGAGVALDAATRGLRVGLVER  102 (627)
T ss_pred             cCEEEECCCHHHHHHHHHHHhCCCEEEEEec
Confidence            4689999999999999999998988888876

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=95.83  E-value=0.012  Score=61.41  Aligned_cols=34  Identities=32%  Similarity=0.260  Sum_probs=31.3

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcC
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRL  275 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~  275 (535)
                      ++|+|||||.+|+++|..|++.|.+|+|+++ +..
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~   37 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK   37 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence            5799999999999999999999999999997 544

>PRK08401 L-aspartate oxidase; Provisional

Probab=95.79  E-value=0.098  Score=56.12  Aligned_cols=31  Identities=29%  Similarity=0.368  Sum_probs=28.9

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      ..|+|||+|..|+-+|..+++.|.+|+|+++
T Consensus         2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek   32 (466)
T PRK08401          2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGP   32 (466)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCeEEEEeC
Confidence            4699999999999999999999999999987

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=95.77  E-value=0.044  Score=59.88  Aligned_cols=99  Identities=9%  Similarity=0.035  Sum_probs=72.5

Q ss_pred             CCcEEEECCChHHHHHHHHHHhC---CCcEEEEEc-CcCC-------ccC-----cHHHHHHHHHhhhcCCeEE-cceEE
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFL---GVPVTLVYS-RRLL-------KHF-----DQEMVRILLSSLTKAGVSI-QCCVI  303 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~---g~~Vtlv~~-~~~l-------~~~-----~~~~~~~~~~~l~~~gV~i-~~~~v  303 (535)
                      ..+++|||.|..|..+...+...   -..||++.. +++-       +.+     -+++.-.-.+..+++||++ ++..+
T Consensus         3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~~~v   82 (793)
T COG1251           3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTGEKV   82 (793)
T ss_pred             ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEEEcCCee
Confidence            36799999999999988888774   358888855 3321       111     1334434456678899999 99999


Q ss_pred             EEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCC
Q psy14461        304 EKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAAL  347 (535)
Q Consensus       304 ~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l  347 (535)
                      ..|+..   ...|+.   +.|.  ++.+|-+++|||..|.....
T Consensus        83 ~~idr~---~k~V~t---~~g~--~~~YDkLilATGS~pfi~Pi  118 (793)
T COG1251          83 IQIDRA---NKVVTT---DAGR--TVSYDKLIIATGSYPFILPI  118 (793)
T ss_pred             EEeccC---cceEEc---cCCc--EeecceeEEecCccccccCC
Confidence            999864   234554   3787  89999999999999987654

>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=95.76  E-value=0.026  Score=42.80  Aligned_cols=58  Identities=28%  Similarity=0.419  Sum_probs=40.1

Q ss_pred             cEEEEeCCCchhhHHHHHHHHHhcCCcceEEEEEeeCCccHHHHHHHHHhhCCCeE-EEEecCC
Q psy14461         59 RILIFTHAVLREENARAERYLNARGDRFAVLYLDRIGDEGILLEEELKRQTNQRRD-ELQERGS  121 (535)
Q Consensus        59 ~v~v~~k~~cp~~~~~~k~~~~~~~~~~~~~~v~iiG~G~aG~~~al~~~~~~~~V-~lie~~~  121 (535)
                      +|.+|++..|| +|.+++.++.+.+.++.  .+++... +. ....+....+..++ +++..+.
T Consensus         1 ~v~ly~~~~Cp-~C~~~~~~L~~~~i~~~--~~di~~~-~~-~~~~l~~~~~~~~~P~~~~~~~   59 (72)
T cd02066           1 KVVVFSKSTCP-YCKRAKRLLESLGIEFE--EIDILED-GE-LREELKELSGWPTVPQIFINGE   59 (72)
T ss_pred             CEEEEECCCCH-HHHHHHHHHHHcCCcEE--EEECCCC-HH-HHHHHHHHhCCCCcCEEEECCE
Confidence            57899999999 99999999999986654  4444433 33 55666666665555 4554443

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=95.75  E-value=0.11  Score=57.39  Aligned_cols=55  Identities=22%  Similarity=0.152  Sum_probs=36.3

Q ss_pred             HHHhhhcCCeEE-cceEEEEEEEeCCCcEE-EEEecCCCCCceEEEcCEEEEccCCCC
Q psy14461        287 LLSSLTKAGVSI-QCCVIEKVISSFDGMKG-VRGFHPESKEPFADVFKTVVNAMEKKF  342 (535)
Q Consensus       287 ~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~-v~~~~~~~G~~~~~~~D~vi~a~G~~p  342 (535)
                      +.+.+++.||++ .++.++++..+ ++++. +...+..+|+...+.++.||+|+|--.
T Consensus       141 L~~~~~~~gi~i~~~t~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~  197 (575)
T PRK05945        141 LVNNLRRYGVTIYDEWYVMRLILE-DNQAKGVVMYHIADGRLEVVRAKAVMFATGGYG  197 (575)
T ss_pred             HHHHHhhCCCEEEeCcEEEEEEEE-CCEEEEEEEEEcCCCeEEEEECCEEEECCCCCc
Confidence            334455568999 99999988654 45432 322221356555789999999999754

>PTZ00367 squalene epoxidase; Provisional

Probab=95.71  E-value=0.085  Score=57.81  Aligned_cols=31  Identities=23%  Similarity=0.342  Sum_probs=29.7

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      -+|+|||||..|+-+|..|++.|.+|+++++
T Consensus        34 ~dViIVGaGiaGlalA~aLar~G~~V~VlEr   64 (567)
T PTZ00367         34 YDVIIVGGSIAGPVLAKALSKQGRKVLMLER   64 (567)
T ss_pred             ccEEEECCCHHHHHHHHHHHhcCCEEEEEcc
Confidence            4799999999999999999999999999998

>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=95.69  E-value=0.013  Score=43.33  Aligned_cols=45  Identities=20%  Similarity=0.329  Sum_probs=33.9

Q ss_pred             EEEEeCCCchhhHHHHHHHHHhcCCcceEEEEEeeCCccHHHHHHHHHhh
Q psy14461         60 ILIFTHAVLREENARAERYLNARGDRFAVLYLDRIGDEGILLEEELKRQT  109 (535)
Q Consensus        60 v~v~~k~~cp~~~~~~k~~~~~~~~~~~~~~v~iiG~G~aG~~~al~~~~  109 (535)
                      |++|++..|| +|.++++++.+.+.+++.+++....   . ...++....
T Consensus         1 V~vy~~~~C~-~C~~~~~~L~~~~i~y~~~dv~~~~---~-~~~~l~~~~   45 (60)
T PF00462_consen    1 VVVYTKPGCP-YCKKAKEFLDEKGIPYEEVDVDEDE---E-AREELKELS   45 (60)
T ss_dssp             EEEEESTTSH-HHHHHHHHHHHTTBEEEEEEGGGSH---H-HHHHHHHHH
T ss_pred             cEEEEcCCCc-CHHHHHHHHHHcCCeeeEcccccch---h-HHHHHHHHc
Confidence            6789999999 9999999999999887666655432   2 555565543

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....

>PRK07804 L-aspartate oxidase; Provisional

Probab=95.66  E-value=0.14  Score=56.03  Aligned_cols=31  Identities=19%  Similarity=0.255  Sum_probs=27.6

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      -.|+|||+|..|+-+|..+++.|.+|+|+++
T Consensus        17 ~DVlVIG~G~AGl~AAi~aae~G~~VilleK   47 (541)
T PRK07804         17 ADVVVVGSGVAGLTAALAARRAGRRVLVVTK   47 (541)
T ss_pred             cCEEEECccHHHHHHHHHHHHcCCeEEEEEc
Confidence            4699999999999999999988999999987

>KOG1298|consensus

Probab=95.65  E-value=0.045  Score=55.32  Aligned_cols=31  Identities=16%  Similarity=0.277  Sum_probs=29.5

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      -.|+|||+|..|.-+|..|.+.|.+|++++|
T Consensus        46 ~DvIIVGAGV~GsaLa~~L~kdGRrVhVIER   76 (509)
T KOG1298|consen   46 ADVIIVGAGVAGSALAYALAKDGRRVHVIER   76 (509)
T ss_pred             ccEEEECCcchHHHHHHHHhhCCcEEEEEec
Confidence            4599999999999999999999999999998

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.64  E-value=0.14  Score=53.68  Aligned_cols=34  Identities=18%  Similarity=0.196  Sum_probs=27.6

Q ss_pred             CcEEEECCChHHHHHHHHHHhCC---CcEEEEEc-CcC
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLG---VPVTLVYS-RRL  275 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g---~~Vtlv~~-~~~  275 (535)
                      .+|+|||||++|+.+|..|.+.-   ..|+|+++ +++
T Consensus         2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~   39 (474)
T COG4529           2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNF   39 (474)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCCCCceEEecccccc
Confidence            47999999999999999998762   23999977 543

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=95.57  E-value=0.016  Score=55.90  Aligned_cols=37  Identities=16%  Similarity=0.118  Sum_probs=32.8

Q ss_pred             EEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccc
Q psy14461         90 YLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFR  126 (535)
Q Consensus        90 ~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~  126 (535)
                      .|+|||+|.+|++||..+...+.+||||||+..++++
T Consensus         3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGR   39 (331)
T COG3380           3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGR   39 (331)
T ss_pred             cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccc
Confidence            4799999999999999988899999999999866544

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=95.55  E-value=0.19  Score=55.69  Aligned_cols=31  Identities=13%  Similarity=0.208  Sum_probs=27.4

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      -.|+|||+|..|+-+|..+++.|.+|+|+++
T Consensus        13 ~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK   43 (591)
T PRK07057         13 FDVVIVGAGGSGMRASLQLARAGLSVAVLSK   43 (591)
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCcEEEEec
Confidence            4699999999999999998888999999876

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=95.52  E-value=0.16  Score=56.08  Aligned_cols=30  Identities=17%  Similarity=0.283  Sum_probs=27.1

Q ss_pred             cEEEECCChHHHHHHHHHHhCC---CcEEEEEc
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLG---VPVTLVYS  272 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g---~~Vtlv~~  272 (535)
                      .|+|||+|..|+-+|..+++.|   .+|+|+++
T Consensus         7 DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK   39 (577)
T PRK06069          7 DVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSK   39 (577)
T ss_pred             CEEEECccHHHHHHHHHHHHhCCCCCcEEEEEc
Confidence            5999999999999999999988   79999986

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=95.52  E-value=0.032  Score=63.62  Aligned_cols=32  Identities=25%  Similarity=0.391  Sum_probs=29.7

Q ss_pred             cEEEECCChHHHHHHHHHHhC--CCcEEEEEc-Cc
Q psy14461        243 KTLVLGGSLMAVEIAATLNFL--GVPVTLVYS-RR  274 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~--g~~Vtlv~~-~~  274 (535)
                      +|+|||||+.|+-+|..|++.  |.+|+|+++ +.
T Consensus         2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~   36 (765)
T PRK08255          2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP   36 (765)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence            699999999999999999998  899999998 54

>KOG0405|consensus

Probab=95.52  E-value=0.16  Score=50.84  Aligned_cols=70  Identities=16%  Similarity=0.132  Sum_probs=43.9

Q ss_pred             HHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCC
Q psy14461        288 LSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNE  366 (535)
Q Consensus       288 ~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~  366 (535)
                      ++.|.+.+|++ .+..  ++..  ++.+.|+..   ||+...+.+..+++|+|-+|..+.+  ....+.+|.+|+....+
T Consensus       117 ~~~L~k~~V~~i~G~a--~f~~--~~~v~V~~~---d~~~~~Ytak~iLIAtGg~p~~PnI--pG~E~gidSDgff~Lee  187 (478)
T KOG0405|consen  117 KRNLAKAAVKLIEGRA--RFVS--PGEVEVEVN---DGTKIVYTAKHILIATGGRPIIPNI--PGAELGIDSDGFFDLEE  187 (478)
T ss_pred             HhhccccceeEEeeeE--EEcC--CCceEEEec---CCeeEEEecceEEEEeCCccCCCCC--Cchhhccccccccchhh
Confidence            33445556666 3321  1111  455677763   7766668999999999999988755  44445556667665543

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=95.50  E-value=0.21  Score=55.25  Aligned_cols=31  Identities=32%  Similarity=0.430  Sum_probs=29.0

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      ..|+|||+|..|+-+|..+++.|.+|+|+++
T Consensus         4 ~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK   34 (589)
T PRK08641          4 GKVIVVGGGLAGLMATIKAAEAGVHVDLFSL   34 (589)
T ss_pred             ccEEEECchHHHHHHHHHHHHcCCcEEEEEc
Confidence            4799999999999999999999999999985

>KOG2614|consensus

Probab=95.46  E-value=0.099  Score=53.60  Aligned_cols=31  Identities=26%  Similarity=0.487  Sum_probs=29.7

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      .+|+|||||..|+-.|..|.++|.+|.+++.
T Consensus         3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~   33 (420)
T KOG2614|consen    3 PKVVIVGGGIVGLATALALHRKGIDVVVLES   33 (420)
T ss_pred             CcEEEECCcHHHHHHHHHHHHcCCeEEEEee
Confidence            5799999999999999999999999999987

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=95.44  E-value=0.18  Score=56.36  Aligned_cols=31  Identities=19%  Similarity=0.318  Sum_probs=28.2

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      -.|+|||+|..|+-+|..+++.|.+|.++++
T Consensus         6 ~DVlVIG~G~AGl~AAi~Aae~G~~VivleK   36 (657)
T PRK08626          6 TDALVIGAGLAGLRVAIAAAQRGLDTIVLSL   36 (657)
T ss_pred             ccEEEECccHHHHHHHHHHHHcCCCEEEEeC
Confidence            3699999999999999999999999999986

>PLN02815 L-aspartate oxidase

Probab=95.42  E-value=0.15  Score=56.20  Aligned_cols=46  Identities=15%  Similarity=0.139  Sum_probs=31.3

Q ss_pred             CCeEE-cceEEEEEEEeCCCc---E-EEEEecCCCCCceEEEcCEEEEccC
Q psy14461        294 AGVSI-QCCVIEKVISSFDGM---K-GVRGFHPESKEPFADVFKTVVNAME  339 (535)
Q Consensus       294 ~gV~i-~~~~v~~i~~~~~~~---~-~v~~~~~~~G~~~~~~~D~vi~a~G  339 (535)
                      .||++ .++.++++..++++.   + -+...+..+|+...+.++.||+|||
T Consensus       169 ~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATG  219 (594)
T PLN02815        169 PNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASG  219 (594)
T ss_pred             CCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCC
Confidence            38888 888888876542332   2 2443322467666789999999998

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=95.39  E-value=0.22  Score=54.99  Aligned_cols=48  Identities=17%  Similarity=0.056  Sum_probs=34.2

Q ss_pred             hcCCeEE-cceEEEEEEEeCCCcEE-EEEecCCCCCceEEEcC-EEEEccCCC
Q psy14461        292 TKAGVSI-QCCVIEKVISSFDGMKG-VRGFHPESKEPFADVFK-TVVNAMEKK  341 (535)
Q Consensus       292 ~~~gV~i-~~~~v~~i~~~~~~~~~-v~~~~~~~G~~~~~~~D-~vi~a~G~~  341 (535)
                      ++.|+++ +++.++++..++++++. |..+.  +|+...+.+. .||+|+|--
T Consensus       224 ~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~--~~~~~~i~a~~aVilAtGGf  274 (584)
T PRK12835        224 KDAGVPLWLDSPMTELITDPDGAVVGAVVER--EGRTLRIGARRGVILATGGF  274 (584)
T ss_pred             HhCCceEEeCCEEEEEEECCCCcEEEEEEEe--CCcEEEEEeceeEEEecCcc
Confidence            4567899 99999999875345553 55542  6666678897 699999743

>KOG2311|consensus

Probab=95.32  E-value=0.088  Score=54.69  Aligned_cols=31  Identities=29%  Similarity=0.342  Sum_probs=28.6

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      -.|+|||||..|+|+|.+.+|.|.+.++++.
T Consensus        29 ~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~   59 (679)
T KOG2311|consen   29 YDVVVIGGGHAGCEAAAAAARLGARTLLLTH   59 (679)
T ss_pred             ccEEEECCCccchHHHHHHHhcCCceEEeec
Confidence            3799999999999999999999999998865

>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH

Probab=95.29  E-value=0.055  Score=41.73  Aligned_cols=55  Identities=15%  Similarity=0.177  Sum_probs=36.6

Q ss_pred             EEEEeCCCchhhHHHHHHHHHhcCCcceEEEEEeeCCccHHHHHHHHHhh-CCCeEEEEec
Q psy14461         60 ILIFTHAVLREENARAERYLNARGDRFAVLYLDRIGDEGILLEEELKRQT-NQRRDELQER  119 (535)
Q Consensus        60 v~v~~k~~cp~~~~~~k~~~~~~~~~~~~~~v~iiG~G~aG~~~al~~~~-~~~~V~lie~  119 (535)
                      |.+|++..|| +|.++++++.+.+..++.+++.   ..+. ....+.... ....+++++.
T Consensus         1 v~ly~~~~Cp-~C~~ak~~L~~~~i~~~~~di~---~~~~-~~~~~~~~g~~~vP~v~~~g   56 (72)
T TIGR02194         1 ITVYSKNNCV-QCKMTKKALEEHGIAFEEINID---EQPE-AIDYVKAQGFRQVPVIVADG   56 (72)
T ss_pred             CEEEeCCCCH-HHHHHHHHHHHCCCceEEEECC---CCHH-HHHHHHHcCCcccCEEEECC
Confidence            4689999999 9999999999999887666554   2233 344444332 2344566643

NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=95.23  E-value=0.1  Score=53.45  Aligned_cols=104  Identities=13%  Similarity=0.051  Sum_probs=60.5

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-CcEEEEEc-CcCC--ccC---------------------------------------
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLG-VPVTLVYS-RRLL--KHF---------------------------------------  279 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g-~~Vtlv~~-~~~l--~~~---------------------------------------  279 (535)
                      .++.||.|+..+-+|..|...+ .++..+++ +.+.  |.+                                       
T Consensus         4 D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~rl~~   83 (341)
T PF13434_consen    4 DLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGRLYE   83 (341)
T ss_dssp             SEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-HHH
T ss_pred             eEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCChhh
Confidence            4899999999999999998886 78999987 5431  110                                       


Q ss_pred             ----------cHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCC---cEEEEEecCCCCCceEEEcCEEEEccCCCCCCC
Q psy14461        280 ----------DQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDG---MKGVRGFHPESKEPFADVFKTVVNAMEKKFDFA  345 (535)
Q Consensus       280 ----------~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~---~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~  345 (535)
                                -.++.++++-..++.+-.+ .+.+|++|+...++   ...|+..+ .+|+..++.++.|++++|..|..+
T Consensus        84 f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~-~~g~~~~~~ar~vVla~G~~P~iP  162 (341)
T PF13434_consen   84 FYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRD-SDGDGETYRARNVVLATGGQPRIP  162 (341)
T ss_dssp             HHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEE-TTS-EEEEEESEEEE----EE---
T ss_pred             hhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEee-cCCCeeEEEeCeEEECcCCCCCCC
Confidence                      0223333333333333336 78889999876332   35677654 467667999999999999998875


Q ss_pred             CC
Q psy14461        346 AL  347 (535)
Q Consensus       346 ~l  347 (535)
                      ..
T Consensus       163 ~~  164 (341)
T PF13434_consen  163 EW  164 (341)
T ss_dssp             GG
T ss_pred             cc
Confidence            43

>PRK06753 hypothetical protein; Provisional

Probab=95.07  E-value=0.024  Score=58.72  Aligned_cols=34  Identities=15%  Similarity=0.020  Sum_probs=31.3

Q ss_pred             EEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcc
Q psy14461         90 YLDRIGDEGILLEEELKRQTNQRRDELQERGSHL  123 (535)
Q Consensus        90 ~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~  123 (535)
                      +|+|||+|++|+++|+.+...+.+|+|+|+.+..
T Consensus         2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~   35 (373)
T PRK06753          2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESV   35 (373)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence            6899999999999999998899999999998754

>PRK11200 grxA glutaredoxin 1; Provisional

Probab=95.04  E-value=0.041  Score=43.99  Aligned_cols=36  Identities=17%  Similarity=0.191  Sum_probs=27.1

Q ss_pred             cEEEEeCCCchhhHHHHHHHHHh-----cCCcceEEEEEeeCCc
Q psy14461         59 RILIFTHAVLREENARAERYLNA-----RGDRFAVLYLDRIGDE   97 (535)
Q Consensus        59 ~v~v~~k~~cp~~~~~~k~~~~~-----~~~~~~~~~v~iiG~G   97 (535)
                      +|.+|++++|| +|.++++++.+     .+..+  ..++|.-.+
T Consensus         2 ~v~iy~~~~C~-~C~~a~~~L~~l~~~~~~i~~--~~idi~~~~   42 (85)
T PRK11200          2 FVVIFGRPGCP-YCVRAKELAEKLSEERDDFDY--RYVDIHAEG   42 (85)
T ss_pred             EEEEEeCCCCh-hHHHHHHHHHhhcccccCCcE--EEEECCCCh
Confidence            47899999999 99999999998     44444  445555443

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=95.00  E-value=0.022  Score=59.96  Aligned_cols=36  Identities=14%  Similarity=-0.018  Sum_probs=32.4

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcc
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHL  123 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~  123 (535)
                      .++|+|||+|++|+++|+.+...+.+|+|+|+.+..
T Consensus        18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   53 (415)
T PRK07364         18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAE   53 (415)
T ss_pred             ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence            367899999999999999999999999999998754

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=95.00  E-value=0.025  Score=60.96  Aligned_cols=55  Identities=18%  Similarity=0.154  Sum_probs=42.7

Q ss_pred             HHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCC
Q psy14461        281 QEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEK  340 (535)
Q Consensus       281 ~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~  340 (535)
                      ..+.+.+.+.+++.|++| ++++|++|..+++..+.++.   .+|+  .+++|.|+.....
T Consensus       224 ~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~---~~g~--~~~ad~vv~~~~~  279 (487)
T COG1233         224 GALVDALAELAREHGGEIRTGAEVSQILVEGGKGVGVRT---SDGE--NIEADAVVSNADP  279 (487)
T ss_pred             HHHHHHHHHHHHHcCCEEECCCceEEEEEeCCcceEEec---cccc--eeccceeEecCch
Confidence            457788889999999999 99999999886322345554   3554  7999999988766

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=94.97  E-value=0.025  Score=60.25  Aligned_cols=38  Identities=16%  Similarity=0.047  Sum_probs=32.8

Q ss_pred             EEEeeCCccHHHHHHHHHhhCC--CeEEEEecCCcccccc
Q psy14461         90 YLDRIGDEGILLEEELKRQTNQ--RRDELQERGSHLSFRK  127 (535)
Q Consensus        90 ~v~iiG~G~aG~~~al~~~~~~--~~V~lie~~~~~~~~~  127 (535)
                      +|+|||+|.+|+++|..+...+  .+|+|+|+.+.+++..
T Consensus         2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~   41 (451)
T PRK11883          2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKI   41 (451)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceE
Confidence            5799999999999998887755  8999999999886653

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=94.92  E-value=0.36  Score=53.31  Aligned_cols=46  Identities=11%  Similarity=0.052  Sum_probs=31.1

Q ss_pred             CCeEE-cceEEEEEEEeCCCcEE-EEEecCCCCCceEEEcCEEEEccCC
Q psy14461        294 AGVSI-QCCVIEKVISSFDGMKG-VRGFHPESKEPFADVFKTVVNAMEK  340 (535)
Q Consensus       294 ~gV~i-~~~~v~~i~~~~~~~~~-v~~~~~~~G~~~~~~~D~vi~a~G~  340 (535)
                      .+|++ .++.++++..+ ++++. +...+..+|+...+.++.||+|+|-
T Consensus       146 ~~i~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG  193 (580)
T TIGR01176       146 PQIMRYDEWFVTDLLVD-DGRVCGLVAIEMAEGRLVTILADAVVLATGG  193 (580)
T ss_pred             CCCEEEeCeEEEEEEee-CCEEEEEEEEEcCCCcEEEEecCEEEEcCCC
Confidence            36888 88888887765 45443 3222223676567899999999984

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=94.90  E-value=0.37  Score=53.20  Aligned_cols=46  Identities=11%  Similarity=0.028  Sum_probs=31.4

Q ss_pred             CCeEE-cceEEEEEEEeCCCcEE-EEEecCCCCCceEEEcCEEEEccCC
Q psy14461        294 AGVSI-QCCVIEKVISSFDGMKG-VRGFHPESKEPFADVFKTVVNAMEK  340 (535)
Q Consensus       294 ~gV~i-~~~~v~~i~~~~~~~~~-v~~~~~~~G~~~~~~~D~vi~a~G~  340 (535)
                      .+|++ .++.++++..+ ++.+. +...+..+|+...+.++.||+|+|-
T Consensus       147 ~~i~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG  194 (582)
T PRK09231        147 PQIQRFDEHFVLDILVD-DGHVRGLVAMNMMEGTLVQIRANAVVMATGG  194 (582)
T ss_pred             CCcEEEeCeEEEEEEEe-CCEEEEEEEEEcCCCcEEEEECCEEEECCCC
Confidence            37888 88888887765 45443 3222123666568899999999984

>PRK07045 putative monooxygenase; Reviewed

Probab=94.87  E-value=0.033  Score=58.11  Aligned_cols=36  Identities=8%  Similarity=-0.152  Sum_probs=32.7

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcc
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHL  123 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~  123 (535)
                      .++|+|||+|++|+.+|+.+...+.+|+|+|+.+..
T Consensus         5 ~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~   40 (388)
T PRK07045          5 PVDVLINGSGIAGVALAHLLGARGHSVTVVERAARN   40 (388)
T ss_pred             eeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence            468999999999999999998899999999998854

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.84  E-value=0.073  Score=56.81  Aligned_cols=79  Identities=22%  Similarity=0.228  Sum_probs=54.6

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEE
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRG  318 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~  318 (535)
                      .++++|+|+|.+|+.+|..|++.|++|+++++ +.      +.+. ...+.+.+.|+++ .+....              
T Consensus         5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~------~~~~-~~~~~l~~~~~~~~~~~~~~--------------   63 (450)
T PRK14106          5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEE------DQLK-EALEELGELGIELVLGEYPE--------------   63 (450)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch------HHHH-HHHHHHHhcCCEEEeCCcch--------------
Confidence            58899999999999999999999999999987 31      1222 2223345556555 322211              


Q ss_pred             ecCCCCCceEEEcCEEEEccCCCCCCCCC
Q psy14461        319 FHPESKEPFADVFKTVVNAMEKKFDFAAL  347 (535)
Q Consensus       319 ~~~~~G~~~~~~~D~vi~a~G~~p~~~~l  347 (535)
                           ..  .-.+|.|+.++|..|+.+.+
T Consensus        64 -----~~--~~~~d~vv~~~g~~~~~~~~   85 (450)
T PRK14106         64 -----EF--LEGVDLVVVSPGVPLDSPPV   85 (450)
T ss_pred             -----hH--hhcCCEEEECCCCCCCCHHH
Confidence                 00  12479999999998887654

>KOG1335|consensus

Probab=94.77  E-value=0.17  Score=51.24  Aligned_cols=94  Identities=18%  Similarity=0.073  Sum_probs=64.1

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHH
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRF  167 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  167 (535)
                      ..++.|||+|..|+.-..--.+-+.+||++|--+.+...                            +|.          
T Consensus       211 Pk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~----------------------------mD~----------  252 (506)
T KOG1335|consen  211 PKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGV----------------------------MDG----------  252 (506)
T ss_pred             cceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccc----------------------------cCH----------
Confidence            357799999999988776555678899999987654211                            121          


Q ss_pred             HHHHHHHHHHHHHhcCcEEEEeEEEE-e--c-CC--EEEEce------eEEEcceEEEeeCceecC
Q psy14461        168 CIRAKNDSMRELKALGIDIVRTAAAF-T--N-PH--TIKLSN------RSVTGFNFLLAVERRCLP  221 (535)
Q Consensus       168 ~~~~~~~~~~~~~~~gV~~~~g~~~~-~--~-~~--~v~~~~------~~~~~d~lViATGs~p~~  221 (535)
                        ++....+..+++.|++|..++-.. .  + +.  .|++.+      .++++|.+++|+|-+|..
T Consensus       253 --Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t  316 (506)
T KOG1335|consen  253 --EISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFT  316 (506)
T ss_pred             --HHHHHHHHHHHhcCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCcccc
Confidence              122223466778899999886332 1  1 11  344432      679999999999999986

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=94.73  E-value=0.42  Score=52.83  Aligned_cols=58  Identities=17%  Similarity=0.088  Sum_probs=38.1

Q ss_pred             HHHHHhhhcCCeEE-cceEEEEEEEeCC---CcEE-EEEecCCCCCceEEEcCEEEEccCCCC
Q psy14461        285 RILLSSLTKAGVSI-QCCVIEKVISSFD---GMKG-VRGFHPESKEPFADVFKTVVNAMEKKF  342 (535)
Q Consensus       285 ~~~~~~l~~~gV~i-~~~~v~~i~~~~~---~~~~-v~~~~~~~G~~~~~~~D~vi~a~G~~p  342 (535)
                      ..+.+.+++.||++ .++.++++..+++   +++. +...+..+|+...+.++.||+|||-..
T Consensus       144 ~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~  206 (583)
T PRK08205        144 QTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG  206 (583)
T ss_pred             HHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence            33445556678999 9999999875421   4432 333222356555789999999999654

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=94.68  E-value=0.41  Score=52.89  Aligned_cols=52  Identities=19%  Similarity=-0.024  Sum_probs=35.8

Q ss_pred             HhhhcCCeEE-cceEEEEEEEeCCCcEE-EEEecCCCCCceEEEc-CEEEEccCCCCC
Q psy14461        289 SSLTKAGVSI-QCCVIEKVISSFDGMKG-VRGFHPESKEPFADVF-KTVVNAMEKKFD  343 (535)
Q Consensus       289 ~~l~~~gV~i-~~~~v~~i~~~~~~~~~-v~~~~~~~G~~~~~~~-D~vi~a~G~~p~  343 (535)
                      +.+++.||++ .++.++++..+ ++++. |...  .+|+...+.+ +.||+|+|--..
T Consensus       229 ~~~~~~Gv~i~~~t~v~~Li~~-~g~V~GV~~~--~~g~~~~i~A~~~VVlAtGg~~~  283 (578)
T PRK12843        229 YSLRARGVRILTQTDVESLETD-HGRVIGATVV--QGGVRRRIRARGGVVLATGGFNR  283 (578)
T ss_pred             HHHHhCCCEEEeCCEEEEEEee-CCEEEEEEEe--cCCeEEEEEccceEEECCCCccc
Confidence            3445578999 99999998764 45543 5554  2565556786 789999986544

>PRK09126 hypothetical protein; Provisional

Probab=94.65  E-value=0.032  Score=58.21  Aligned_cols=34  Identities=15%  Similarity=-0.048  Sum_probs=31.4

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSH  122 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~  122 (535)
                      .+|+|||+|++|+++|+.+...+.+|+|+|+.+.
T Consensus         4 ~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~   37 (392)
T PRK09126          4 SDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPL   37 (392)
T ss_pred             ccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence            5789999999999999999889999999999875

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=94.65  E-value=0.032  Score=58.82  Aligned_cols=35  Identities=20%  Similarity=0.168  Sum_probs=30.1

Q ss_pred             EEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccc
Q psy14461         90 YLDRIGDEGILLEEELKRQTNQRRDELQERGSHLS  124 (535)
Q Consensus        90 ~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~  124 (535)
                      ||+|||+|.+|+.+|+.+...+.+|+|+||.+..+
T Consensus         1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~g   35 (417)
T PF00890_consen    1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLG   35 (417)
T ss_dssp             SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGG
T ss_pred             CEEEECCCHHHHHHHHHHhhhcCeEEEEEeecccc
Confidence            58999999999999999999999999999998643

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>TIGR02181 GRX_bact Glutaredoxin, GrxC family

Probab=94.61  E-value=0.045  Score=42.95  Aligned_cols=47  Identities=23%  Similarity=0.425  Sum_probs=33.8

Q ss_pred             EEEEeCCCchhhHHHHHHHHHhcCCcceEEEEEeeCCccHHHHHHHHHhhCC
Q psy14461         60 ILIFTHAVLREENARAERYLNARGDRFAVLYLDRIGDEGILLEEELKRQTNQ  111 (535)
Q Consensus        60 v~v~~k~~cp~~~~~~k~~~~~~~~~~~~~~v~iiG~G~aG~~~al~~~~~~  111 (535)
                      |.+|+++.|| +|.+++.++.+.+..++.+++.-  . +. ....+....+.
T Consensus         1 v~ly~~~~Cp-~C~~a~~~L~~~~i~~~~~di~~--~-~~-~~~~~~~~~g~   47 (79)
T TIGR02181         1 VTIYTKPYCP-YCTRAKALLSSKGVTFTEIRVDG--D-PA-LRDEMMQRSGR   47 (79)
T ss_pred             CEEEecCCCh-hHHHHHHHHHHcCCCcEEEEecC--C-HH-HHHHHHHHhCC
Confidence            4689999999 99999999999998876666542  2 33 44555554443

This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=94.56  E-value=0.038  Score=57.81  Aligned_cols=34  Identities=12%  Similarity=-0.129  Sum_probs=31.2

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSH  122 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~  122 (535)
                      ++|+|||+|++|+++|+.+...+.+|+|+|+.+.
T Consensus         7 ~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~   40 (392)
T PRK08773          7 RDAVIVGGGVVGAACALALADAGLSVALVEGREP   40 (392)
T ss_pred             CCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCC
Confidence            5789999999999999998888999999999864

>PRK08071 L-aspartate oxidase; Provisional

Probab=94.54  E-value=0.34  Score=52.62  Aligned_cols=94  Identities=15%  Similarity=0.130  Sum_probs=0.0

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCc-----------------------------------------
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFD-----------------------------------------  280 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~-----------------------------------------  280 (535)
                      .|+|||+|..|+-+|..+++ |.+|+++++ +.......                                         
T Consensus         5 DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v~~~~~   83 (510)
T PRK08071          5 DVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSNSHLAQGGIAAAVATYDSPNDHFEDTLVAGCHHNNERAVRYLVE   83 (510)
T ss_pred             CEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCCchhcCccceecccCCCCHHHHHHHHHHhccCcCCHHHHHHHHH


Q ss_pred             ----------------------------------------------HHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCc
Q psy14461        281 ----------------------------------------------QEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGM  313 (535)
Q Consensus       281 ----------------------------------------------~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~  313 (535)
                                                                    ..+.+.+.+.++ .||++ .++.++++..+ +++
T Consensus        84 ~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~gd~~g~~i~~~L~~~~~-~gV~i~~~~~v~~Li~~-~g~  161 (510)
T PRK08071         84 EGPKEIQELIENGMPFDGDETGPLHLGKEGAHRKRRILHAGGDATGKNLLEHLLQELV-PHVTVVEQEMVIDLIIE-NGR  161 (510)
T ss_pred             HHHHHHHHHHHcCCccccCCCCceeeccCcCccCCeEEecCCCCcHHHHHHHHHHHHh-cCCEEEECeEhhheeec-CCE


Q ss_pred             EEEEEecCCCCCceEEEcCEEEEccC
Q psy14461        314 KGVRGFHPESKEPFADVFKTVVNAME  339 (535)
Q Consensus       314 ~~v~~~~~~~G~~~~~~~D~vi~a~G  339 (535)
                      +.-......+|+...+.++.||+|+|
T Consensus       162 v~Gv~~~~~~g~~~~i~Ak~VVlATG  187 (510)
T PRK08071        162 CIGVLTKDSEGKLKRYYADYVVLASG  187 (510)
T ss_pred             EEEEEEEECCCcEEEEEcCeEEEecC

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=94.51  E-value=0.036  Score=57.87  Aligned_cols=33  Identities=15%  Similarity=0.111  Sum_probs=30.4

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCC
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGS  121 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~  121 (535)
                      .+|+|||+|++|+++|+.+...+.+|+|||+.+
T Consensus         4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~   36 (384)
T PRK08849          4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE   36 (384)
T ss_pred             ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence            578999999999999999888899999999875

>PRK07233 hypothetical protein; Provisional

Probab=94.45  E-value=0.04  Score=58.18  Aligned_cols=55  Identities=15%  Similarity=0.190  Sum_probs=42.1

Q ss_pred             HHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCC
Q psy14461        281 QEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKK  341 (535)
Q Consensus       281 ~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~  341 (535)
                      ..+.+.+.+.+++.|+++ .+++|++|+.+ ++.+.+...   +|+  ++++|.||+|++..
T Consensus       198 ~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~-~~~~~~~~~---~~~--~~~ad~vI~a~p~~  253 (434)
T PRK07233        198 ATLIDALAEAIEARGGEIRLGTPVTSVVID-GGGVTGVEV---DGE--EEDFDAVISTAPPP  253 (434)
T ss_pred             HHHHHHHHHHHHhcCceEEeCCCeeEEEEc-CCceEEEEe---CCc--eEECCEEEECCCHH
Confidence            456777888888889999 99999999876 454543332   555  79999999998753

>KOG0029|consensus

Probab=94.43  E-value=0.042  Score=59.11  Aligned_cols=39  Identities=15%  Similarity=-0.123  Sum_probs=35.3

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRK  127 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~  127 (535)
                      .+|+|||+|.+|++||-.+...+.+|+|+|..+.++++.
T Consensus        16 ~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI   54 (501)
T KOG0029|consen   16 KKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRI   54 (501)
T ss_pred             CcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCcee
Confidence            457999999999999999999999999999999887654

>KOG2820|consensus

Probab=94.41  E-value=0.44  Score=47.67  Aligned_cols=31  Identities=16%  Similarity=0.287  Sum_probs=28.8

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      ..++|||+|.-|+-.|..|+++|.++.++++
T Consensus         8 ~~viiVGAGVfG~stAyeLaK~g~killLeq   38 (399)
T KOG2820|consen    8 RDVIIVGAGVFGLSTAYELAKRGDKILLLEQ   38 (399)
T ss_pred             eeEEEEcccccchHHHHHHHhcCCeEEEEec
Confidence            5699999999999999999999999999877

>PRK07395 L-aspartate oxidase; Provisional

Probab=94.37  E-value=0.27  Score=53.87  Aligned_cols=94  Identities=15%  Similarity=0.064  Sum_probs=0.0

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCc-----------------------------------------
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFD-----------------------------------------  280 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~-----------------------------------------  280 (535)
                      .|+|||+|..|+-+|..+++ |.+|.|+++ +..-....                                         
T Consensus        11 DVlVVG~G~AGl~AAi~A~~-G~~V~lieK~~~~gg~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~~~~d~~lv~~~~~   89 (553)
T PRK07395         11 DVLVVGSGAAGLYAALCLPS-HLRVGLITKDTLKTSASDWAQGGIAAAIAPDDSPKLHYEDTLKAGAGLCDPEAVRFLVE   89 (553)
T ss_pred             CEEEECccHHHHHHHHHhhc-CCCEEEEEccCCCCCchhhhcccceecccCCCCHHHHHHHHHHhcCCCCCHHHHHHHHH


Q ss_pred             --------------------------------------------HHHHHHHHHhhhcC-CeEE-cceEEEEEEEeCC-Cc
Q psy14461        281 --------------------------------------------QEMVRILLSSLTKA-GVSI-QCCVIEKVISSFD-GM  313 (535)
Q Consensus       281 --------------------------------------------~~~~~~~~~~l~~~-gV~i-~~~~v~~i~~~~~-~~  313 (535)
                                                                  ..+...+.+.++++ ||++ .++.++++..+++ ++
T Consensus        90 ~s~~~i~wL~~~Gv~f~~~~~~~~~~~~~g~s~~r~~~~~d~~G~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~  169 (553)
T PRK07395         90 QAPEAIASLVEMGVAFDRHGQHLALTLEAAHSRPRVLHAADTTGRAIVTTLTEQVLQRPNIEIISQALALSLWLEPETGR  169 (553)
T ss_pred             HHHHHHHHHHhcCCeeecCCCceeeecccccccCeEEEeCCCChHHHHHHHHHHHhhcCCcEEEECcChhhheecCCCCE


Q ss_pred             EE-EEEecCCCCCceEEEcCEEEEccC
Q psy14461        314 KG-VRGFHPESKEPFADVFKTVVNAME  339 (535)
Q Consensus       314 ~~-v~~~~~~~G~~~~~~~D~vi~a~G  339 (535)
                      +. +....  +|+...+.++.||+|||
T Consensus       170 v~Gv~~~~--~g~~~~i~AkaVILATG  194 (553)
T PRK07395        170 CQGISLLY--QGQITWLRAGAVILATG  194 (553)
T ss_pred             EEEEEEEE--CCeEEEEEcCEEEEcCC

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=94.35  E-value=0.042  Score=57.15  Aligned_cols=34  Identities=18%  Similarity=-0.037  Sum_probs=30.8

Q ss_pred             EEEeeCCccHHHHHHHHHhhCC-CeEEEEecCCcc
Q psy14461         90 YLDRIGDEGILLEEELKRQTNQ-RRDELQERGSHL  123 (535)
Q Consensus        90 ~v~iiG~G~aG~~~al~~~~~~-~~V~lie~~~~~  123 (535)
                      +|+|||+|++|+.+|+.+...+ .+|+|+|+.+..
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~   35 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPS   35 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCcc
Confidence            4799999999999999999999 999999998743

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=94.31  E-value=0.043  Score=57.29  Aligned_cols=35  Identities=9%  Similarity=-0.057  Sum_probs=31.6

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCc
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSH  122 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~  122 (535)
                      .++|+|||+|++|+++|+.+...+.+|+|+|+.+.
T Consensus         5 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~   39 (391)
T PRK08020          5 PTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAP   39 (391)
T ss_pred             cccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCC
Confidence            36899999999999999998888999999999763

>PRK07588 hypothetical protein; Provisional

Probab=94.31  E-value=0.041  Score=57.48  Aligned_cols=34  Identities=15%  Similarity=-0.047  Sum_probs=30.9

Q ss_pred             EEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcc
Q psy14461         90 YLDRIGDEGILLEEELKRQTNQRRDELQERGSHL  123 (535)
Q Consensus        90 ~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~  123 (535)
                      +|+|||+|++|+++|+.+...+.+|+|+|+.+..
T Consensus         2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~   35 (391)
T PRK07588          2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPEL   35 (391)
T ss_pred             eEEEECccHHHHHHHHHHHHCCCceEEEeCCCCc
Confidence            6899999999999999998899999999998743

>PRK11445 putative oxidoreductase; Provisional

Probab=94.30  E-value=0.044  Score=56.45  Aligned_cols=33  Identities=6%  Similarity=-0.189  Sum_probs=29.9

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSH  122 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~  122 (535)
                      ++|+|||+|++|+++|+.+... .+|+|+|+.+.
T Consensus         2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~   34 (351)
T PRK11445          2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQ   34 (351)
T ss_pred             ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCc
Confidence            5899999999999999988777 99999999874

>PRK08013 oxidoreductase; Provisional

Probab=94.28  E-value=0.04  Score=57.86  Aligned_cols=34  Identities=15%  Similarity=-0.033  Sum_probs=31.3

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSH  122 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~  122 (535)
                      ++|+|||+|++|+++|+.+...+.+|+|+|+.+.
T Consensus         4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~   37 (400)
T PRK08013          4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP   37 (400)
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence            5789999999999999998889999999999875

>PRK07538 hypothetical protein; Provisional

Probab=94.25  E-value=0.045  Score=57.70  Aligned_cols=35  Identities=14%  Similarity=-0.073  Sum_probs=31.3

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHL  123 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~  123 (535)
                      ++|+|||+|++|+++|+.+...+.+|+|||+.+.+
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   35 (413)
T PRK07538          1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPEL   35 (413)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcc
Confidence            36899999999999999888889999999998743

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=94.24  E-value=0.041  Score=57.76  Aligned_cols=33  Identities=18%  Similarity=-0.008  Sum_probs=30.4

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCC
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGS  121 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~  121 (535)
                      .+|+|||+|++|+++|+.+...+.+|+|+|+.+
T Consensus         3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~   35 (405)
T PRK05714          3 ADLLIVGAGMVGSALALALQGSGLEVLLLDGGP   35 (405)
T ss_pred             ccEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence            478999999999999999888899999999976

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=94.24  E-value=0.044  Score=56.85  Aligned_cols=34  Identities=15%  Similarity=-0.012  Sum_probs=30.9

Q ss_pred             EEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcc
Q psy14461         90 YLDRIGDEGILLEEELKRQTNQRRDELQERGSHL  123 (535)
Q Consensus        90 ~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~  123 (535)
                      +|+|||+|++|+.+|+.+...+.+|+|+|+.+..
T Consensus         1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~   34 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARSGLKIALIEATPAE   34 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCcc
Confidence            4799999999999999988889999999999753

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK08163 salicylate hydroxylase; Provisional

Probab=94.23  E-value=0.051  Score=56.79  Aligned_cols=35  Identities=14%  Similarity=0.023  Sum_probs=31.9

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHL  123 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~  123 (535)
                      .+|+|||+|++|+.+|+.+...+.+|+|+|+.+.+
T Consensus         5 ~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~   39 (396)
T PRK08163          5 TPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEI   39 (396)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCccc
Confidence            57899999999999999998899999999998754

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=94.14  E-value=0.051  Score=57.33  Aligned_cols=39  Identities=13%  Similarity=-0.049  Sum_probs=35.6

Q ss_pred             EEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccccc
Q psy14461         90 YLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKK  128 (535)
Q Consensus        90 ~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~  128 (535)
                      +|+|+|+|-||+++|..+...+.+|||+|+++++++...
T Consensus         2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~   40 (485)
T COG3349           2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVA   40 (485)
T ss_pred             eEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceee
Confidence            689999999999999999999999999999998876543

>PRK07236 hypothetical protein; Provisional

Probab=94.13  E-value=0.051  Score=56.73  Aligned_cols=34  Identities=18%  Similarity=-0.065  Sum_probs=31.3

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSH  122 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~  122 (535)
                      .+|+|||+|++|+.+|+.+...+.+|+|+|+.+.
T Consensus         7 ~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (386)
T PRK07236          7 PRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT   40 (386)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            5789999999999999999889999999999864

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=94.13  E-value=0.056  Score=56.06  Aligned_cols=38  Identities=11%  Similarity=-0.069  Sum_probs=33.0

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFR  126 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~  126 (535)
                      ++++|||+|.+|+.+|.++...+.+|+|+|+.+.+++.
T Consensus         2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~   39 (377)
T TIGR00031         2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGN   39 (377)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCc
Confidence            47899999999999998888778999999998876553

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>KOG0029|consensus

Probab=94.12  E-value=0.065  Score=57.63  Aligned_cols=36  Identities=25%  Similarity=0.370  Sum_probs=32.8

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcC
Q psy14461        240 WPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRL  275 (535)
Q Consensus       240 ~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~  275 (535)
                      ..++|+|||+|.+|+-+|..|.+.|.+|+|++. +++
T Consensus        14 ~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRv   50 (501)
T KOG0029|consen   14 KKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRV   50 (501)
T ss_pred             CCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCc
Confidence            357899999999999999999999999999987 655

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=94.11  E-value=0.046  Score=56.85  Aligned_cols=33  Identities=12%  Similarity=-0.098  Sum_probs=30.2

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCC
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGS  121 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~  121 (535)
                      .+|+|||+|++|+++|+.+...+.+|+|+|+.+
T Consensus         2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~   34 (374)
T PRK06617          2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKS   34 (374)
T ss_pred             ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCC
Confidence            578999999999999999988999999999863

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=94.10  E-value=0.053  Score=56.74  Aligned_cols=34  Identities=18%  Similarity=-0.013  Sum_probs=31.3

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSH  122 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~  122 (535)
                      .+|+|||+|++|+++|+.+...+.+|+|+|+.+.
T Consensus         3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~   36 (390)
T TIGR02360         3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR   36 (390)
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence            5789999999999999999889999999999874

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>KOG4716|consensus

Probab=94.10  E-value=0.77  Score=45.94  Aligned_cols=31  Identities=23%  Similarity=0.196  Sum_probs=28.6

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      -.++|||||.-|+.+|...+..|++|-.++-
T Consensus        20 yDLIviGgGSgGLacaKeAa~~G~kV~~lDf   50 (503)
T KOG4716|consen   20 YDLIVIGGGSGGLACAKEAADLGAKVACLDF   50 (503)
T ss_pred             ccEEEEcCCcchhhHHHHHHhcCCcEEEEee
Confidence            4689999999999999999999999999876

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=94.09  E-value=0.065  Score=56.98  Aligned_cols=35  Identities=29%  Similarity=0.419  Sum_probs=31.2

Q ss_pred             CcEEEECCChHHHHHHHHHHhCC--CcEEEEEc-CcCC
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLG--VPVTLVYS-RRLL  276 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g--~~Vtlv~~-~~~l  276 (535)
                      ++|+|||||.+|+-+|..|++.|  .+|+|++. +++.
T Consensus         1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~G   38 (451)
T PRK11883          1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLG   38 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCc
Confidence            47999999999999999999987  89999998 6553

>PRK07233 hypothetical protein; Provisional

Probab=94.08  E-value=0.066  Score=56.57  Aligned_cols=34  Identities=26%  Similarity=0.323  Sum_probs=31.3

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL  276 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l  276 (535)
                      +|+|||||..|+-+|..|++.|.+|+|+++ +++.
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~G   35 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLG   35 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCC
Confidence            589999999999999999999999999998 7653

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=94.07  E-value=0.045  Score=57.19  Aligned_cols=32  Identities=22%  Similarity=0.093  Sum_probs=30.3

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecC
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERG  120 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~  120 (535)
                      .+|+|+|+|++|+..|+.+...+.+|+|+|+.
T Consensus         3 ~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~   34 (387)
T COG0654           3 LDVAIVGAGPAGLALALALARAGLDVTLLERA   34 (387)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence            57899999999999999999999999999998

>PLN02268 probable polyamine oxidase

Probab=94.06  E-value=0.058  Score=57.26  Aligned_cols=38  Identities=13%  Similarity=-0.025  Sum_probs=33.9

Q ss_pred             EEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccc
Q psy14461         90 YLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRK  127 (535)
Q Consensus        90 ~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~  127 (535)
                      +|+|||+|-+|+++|..+...+.+|+|+|+.+.++++.
T Consensus         2 ~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri   39 (435)
T PLN02268          2 SVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRV   39 (435)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCcee
Confidence            57999999999999988888889999999999887664

>KOG1800|consensus

Probab=94.06  E-value=0.19  Score=50.88  Aligned_cols=85  Identities=12%  Similarity=0.043  Sum_probs=57.1

Q ss_pred             CcEEEECCChHHHHHHHHHHhC--CCcEEEEEc-CcCCcc----------CcHHHHHHHHHhhhcCCeEE-cceEE-EEE
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFL--GVPVTLVYS-RRLLKH----------FDQEMVRILLSSLTKAGVSI-QCCVI-EKV  306 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~--g~~Vtlv~~-~~~l~~----------~~~~~~~~~~~~l~~~gV~i-~~~~v-~~i  306 (535)
                      .+|.|||+|+.|+-.|..|.++  +.+|+++++ +.++..          +-+.+...+.+.++.....+ .|..| +.+
T Consensus        21 p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyGVAPDHpEvKnvintFt~~aE~~rfsf~gNv~vG~dv  100 (468)
T KOG1800|consen   21 PRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTAEHERFSFFGNVKVGRDV  100 (468)
T ss_pred             ceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeeccCCCCcchhhHHHHHHHHhhccceEEEecceecccc
Confidence            3899999999999999888774  689999998 766431          12334455666677777777 66655 222


Q ss_pred             EEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCC
Q psy14461        307 ISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKF  342 (535)
Q Consensus       307 ~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p  342 (535)
                                .+.      +.+-.+|+|++|.|...
T Consensus       101 ----------sl~------eL~~~ydavvLaYGa~~  120 (468)
T KOG1800|consen  101 ----------SLK------ELTDNYDAVVLAYGADG  120 (468)
T ss_pred             ----------cHH------HHhhcccEEEEEecCCC
Confidence                      121      11345788888887643

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=94.04  E-value=0.052  Score=58.90  Aligned_cols=38  Identities=8%  Similarity=0.020  Sum_probs=33.6

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccc
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSF  125 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~  125 (535)
                      ..||+|||+|.+|+.+|+.....+.+|+|+||.+..+.
T Consensus        61 ~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG   98 (506)
T PRK06481         61 KYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGG   98 (506)
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCC
Confidence            35899999999999999999889999999999986543

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=94.03  E-value=0.057  Score=57.45  Aligned_cols=35  Identities=14%  Similarity=0.029  Sum_probs=31.5

Q ss_pred             EEEeeCCccHHHHHHHHHhhCC-CeEEEEecCCccc
Q psy14461         90 YLDRIGDEGILLEEELKRQTNQ-RRDELQERGSHLS  124 (535)
Q Consensus        90 ~v~iiG~G~aG~~~al~~~~~~-~~V~lie~~~~~~  124 (535)
                      ||+|||+|.+|+.+|+.+...+ .+|+|+||.+..+
T Consensus         1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~g   36 (439)
T TIGR01813         1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIG   36 (439)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCC
Confidence            5799999999999999998888 9999999988643

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=94.02  E-value=0.058  Score=59.81  Aligned_cols=39  Identities=21%  Similarity=0.233  Sum_probs=33.1

Q ss_pred             CCCCcCCCCEEEeCCcCC-CCCCcHHHHHHHHHHHHHHHh
Q psy14461        366 EKDQTSVGNIFAVGGIVH-GKPNNASMAAISARLIIERLY  404 (535)
Q Consensus       366 ~~~~T~~~~IyA~GD~~~-~~~~~~~~A~~~g~~aa~~i~  404 (535)
                      ++++|++||+||+|||+. +...+...+..+|++|+.++.
T Consensus       389 ~~~~T~v~glyA~Ge~~~~~~~~l~~~s~~~g~~ag~~~~  428 (608)
T PRK06854        389 YNRMTTVEGLFAAGDVVGGSPHKFSSGSFAEGRIAAKAAV  428 (608)
T ss_pred             cccccCCCCEEEeeecCCCCcchhHHHHHHHHHHHHHHHH
Confidence            889999999999999973 245677888889999999886

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=94.01  E-value=0.65  Score=51.05  Aligned_cols=94  Identities=19%  Similarity=0.189  Sum_probs=0.0

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCc-----------------------------------------
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFD-----------------------------------------  280 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~-----------------------------------------  280 (535)
                      .|+|||+| .|+.+|...++.|.+|.++++ +.+-..-.                                         
T Consensus        18 DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~~~~gG~~~~~~~~~~~~~g~~ds~e~~~~y~~~~~~~~~~~~   96 (564)
T PRK12845         18 DLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTARSGGAFWLPASPVLDEAGAGDTLERARTYLDSVVGGSAPAE   96 (564)
T ss_pred             CEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCcccCcCCCEecCChHHHHHhCcchhHHHHHHHHHHHhCCCCCHH


Q ss_pred             ---------HHHHHHHHHh-------------------------------------------------------------
Q psy14461        281 ---------QEMVRILLSS-------------------------------------------------------------  290 (535)
Q Consensus       281 ---------~~~~~~~~~~-------------------------------------------------------------  290 (535)
                               +++.+.+++.                                                             
T Consensus        97 li~~~~~~~~~~i~wl~~~~gv~~~~~~~~~d~~~~~~g~~~~gr~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  176 (564)
T PRK12845         97 RSAAFLDNGSATVDMLRRTTPMRFFWARGYSDYHPEQPGGSAAGRTCECRPFDTAVLGEYRPRLRPGVMEVSIPMPVTGA  176 (564)
T ss_pred             HHHHHHHhhHHHHHHHHhcCCceEEECCCCCCCCCCCCCCCCCCCcccCCCCChhHhhhHHHhcCCccccccccccccHH


Q ss_pred             --------------------------------------------------hhcCCeEE-cceEEEEEEEeCCCcEEEEEe
Q psy14461        291 --------------------------------------------------LTKAGVSI-QCCVIEKVISSFDGMKGVRGF  319 (535)
Q Consensus       291 --------------------------------------------------l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~  319 (535)
                                                                        +++.||++ +++.++++..+++..+-|...
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~  256 (564)
T PRK12845        177 DYRWLNLMARVPRKALPRIAKRLAQGVGGLALGRRYAAGGQALAAGLFAGVLRAGIPIWTETSLVRLTDDGGRVTGAVVD  256 (564)
T ss_pred             HHHHHHHhhcCcchhHHHHHHHHHHHHhhhccCCcccCChHHHHHHHHHHHHHCCCEEEecCEeeEEEecCCEEEEEEEE


Q ss_pred             cCCCCCceEEEcC-EEEEccC
Q psy14461        320 HPESKEPFADVFK-TVVNAME  339 (535)
Q Consensus       320 ~~~~G~~~~~~~D-~vi~a~G  339 (535)
                      .  +|++..+.+. .||+|+|
T Consensus       257 ~--~g~~~~i~a~kaVILAtG  275 (564)
T PRK12845        257 H--RGREVTVTARRGVVLAAG  275 (564)
T ss_pred             E--CCcEEEEEcCCEEEEecC

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=94.01  E-value=0.055  Score=57.01  Aligned_cols=37  Identities=16%  Similarity=0.004  Sum_probs=31.8

Q ss_pred             EEEeeCCccHHHHHHHHHhhCC--CeEEEEecCCccccc
Q psy14461         90 YLDRIGDEGILLEEELKRQTNQ--RRDELQERGSHLSFR  126 (535)
Q Consensus        90 ~v~iiG~G~aG~~~al~~~~~~--~~V~lie~~~~~~~~  126 (535)
                      +++|||+|.+|+++|.++...+  .+|+|+|+++.+++.
T Consensus         2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~   40 (444)
T COG1232           2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGL   40 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCce
Confidence            6799999999999998776666  999999999877544

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=93.99  E-value=0.065  Score=56.35  Aligned_cols=32  Identities=28%  Similarity=0.343  Sum_probs=30.3

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-C
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-R  273 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~  273 (535)
                      ++|+|||||.+|+-+|..|++.|.+|+++++ +
T Consensus         2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~   34 (410)
T PRK12409          2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR   34 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            4799999999999999999999999999998 5

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=93.99  E-value=0.066  Score=54.55  Aligned_cols=31  Identities=23%  Similarity=0.334  Sum_probs=29.3

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEcC
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYSR  273 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~  273 (535)
                      .|+|||+|.+|+-+|..|++.|.+|+|+++.
T Consensus         1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~   31 (358)
T PF01266_consen    1 DVVIIGAGIAGLSTAYELARRGHSVTLLERG   31 (358)
T ss_dssp             EEEEECTSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeec
Confidence            4899999999999999999999999999983

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=93.98  E-value=0.06  Score=57.56  Aligned_cols=39  Identities=13%  Similarity=-0.087  Sum_probs=33.6

Q ss_pred             EEEEeeCCccHHHHHHHHHhhC----CCeEEEEecCCcccccc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTN----QRRDELQERGSHLSFRK  127 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~----~~~V~lie~~~~~~~~~  127 (535)
                      .+|+|||+|.+|+++|..+...    +.+|+|+|+.+.+++..
T Consensus         3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~   45 (462)
T TIGR00562         3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKI   45 (462)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceE
Confidence            4689999999999999887776    89999999999886653

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=93.95  E-value=0.059  Score=56.38  Aligned_cols=34  Identities=18%  Similarity=-0.043  Sum_probs=31.3

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSH  122 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~  122 (535)
                      .+|+|||+|++|+.+|+.+...+.+|+|+|+.+.
T Consensus         3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~   36 (392)
T PRK08243          3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR   36 (392)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence            5789999999999999999889999999999874

>PRK07208 hypothetical protein; Provisional

Probab=93.94  E-value=0.06  Score=57.95  Aligned_cols=38  Identities=11%  Similarity=-0.115  Sum_probs=34.0

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFR  126 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~  126 (535)
                      .+|+|||+|.+|+++|..+...+.+|+|+|+.+.+++.
T Consensus         5 ~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~   42 (479)
T PRK07208          5 KSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGI   42 (479)
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCce
Confidence            46899999999999999888889999999999987654

>KOG0685|consensus

Probab=93.92  E-value=0.071  Score=55.52  Aligned_cols=44  Identities=11%  Similarity=-0.061  Sum_probs=37.5

Q ss_pred             EEEeeCCccHHHHHHHHHh-hCCCeEEEEecCCcccccccccccc
Q psy14461         90 YLDRIGDEGILLEEELKRQ-TNQRRDELQERGSHLSFRKKRRLYY  133 (535)
Q Consensus        90 ~v~iiG~G~aG~~~al~~~-~~~~~V~lie~~~~~~~~~~~l~~~  133 (535)
                      +|+|||+|-||++||-++. .+...++|+|.+++++++...+|+.
T Consensus        23 kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ti~~~   67 (498)
T KOG0685|consen   23 KIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHTIPFA   67 (498)
T ss_pred             eEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEeeEEcC
Confidence            6899999999999998887 5668999999999998876666654

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=93.89  E-value=0.056  Score=58.00  Aligned_cols=34  Identities=18%  Similarity=0.077  Sum_probs=31.4

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSH  122 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~  122 (535)
                      .+|+|||+|.+|+.+|+.+...+.+|+|+||.+.
T Consensus         5 ~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~   38 (466)
T PRK08274          5 VDVLVIGGGNAALCAALAAREAGASVLLLEAAPR   38 (466)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            5789999999999999999999999999999863

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=93.87  E-value=0.052  Score=56.58  Aligned_cols=34  Identities=12%  Similarity=-0.013  Sum_probs=31.1

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSH  122 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~  122 (535)
                      ++|+|||+|++|+.+|+.+...+.+|+|||+.+.
T Consensus         8 ~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~   41 (388)
T PRK07494          8 TDIAVIGGGPAGLAAAIALARAGASVALVAPEPP   41 (388)
T ss_pred             CCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCC
Confidence            5789999999999999988888999999999864

>PRK06475 salicylate hydroxylase; Provisional

Probab=93.84  E-value=0.071  Score=55.96  Aligned_cols=34  Identities=15%  Similarity=-0.001  Sum_probs=30.7

Q ss_pred             EEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcc
Q psy14461         90 YLDRIGDEGILLEEELKRQTNQRRDELQERGSHL  123 (535)
Q Consensus        90 ~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~  123 (535)
                      +|+|||+|++|+++|+.+...+.+|+|+|+.+.+
T Consensus         4 ~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~   37 (400)
T PRK06475          4 SPLIAGAGVAGLSAALELAARGWAVTIIEKAQEL   37 (400)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence            5799999999999999888889999999998753

>PRK06185 hypothetical protein; Provisional

Probab=93.77  E-value=0.06  Score=56.51  Aligned_cols=35  Identities=9%  Similarity=-0.116  Sum_probs=31.4

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCc
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSH  122 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~  122 (535)
                      ..+|+|||+|++|+.+|+.+...+.+|+|+|+.+.
T Consensus         6 ~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~   40 (407)
T PRK06185          6 TTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD   40 (407)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence            36789999999999999988888999999999753

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=93.75  E-value=0.18  Score=53.59  Aligned_cols=33  Identities=15%  Similarity=-0.007  Sum_probs=29.2

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCC
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGS  121 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~  121 (535)
                      ++|+|||+|.||+.||+...+.+.++.|+--+.
T Consensus         5 ~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~   37 (621)
T COG0445           5 YDVIVIGGGHAGVEAALAAARMGAKTLLLTLNL   37 (621)
T ss_pred             CceEEECCCccchHHHHhhhccCCeEEEEEcCC
Confidence            688999999999999999999998888887654

>TIGR02734 crtI_fam phytoene desaturase

Probab=93.74  E-value=0.063  Score=58.18  Aligned_cols=55  Identities=13%  Similarity=0.096  Sum_probs=43.3

Q ss_pred             HHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCc-EEEEEecCCCCCceEEEcCEEEEccCCC
Q psy14461        281 QEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGM-KGVRGFHPESKEPFADVFKTVVNAMEKK  341 (535)
Q Consensus       281 ~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~-~~v~~~~~~~G~~~~~~~D~vi~a~G~~  341 (535)
                      ..+.+.+.+.+++.|+++ .++.|++|..+ +++ +.|++   .+|+  ++.+|.||++++..
T Consensus       219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~-~~~~~~V~~---~~g~--~~~ad~VI~a~~~~  275 (502)
T TIGR02734       219 GALVAAMAKLAEDLGGELRLNAEVIRIETE-GGRATAVHL---ADGE--RLDADAVVSNADLH  275 (502)
T ss_pred             HHHHHHHHHHHHHCCCEEEECCeEEEEEee-CCEEEEEEE---CCCC--EEECCEEEECCcHH
Confidence            467788888888999999 99999999876 344 35665   3676  78999999988753

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>PRK07121 hypothetical protein; Validated

Probab=93.71  E-value=0.07  Score=57.70  Aligned_cols=36  Identities=11%  Similarity=-0.023  Sum_probs=32.8

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLS  124 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~  124 (535)
                      .+|+|||+|.+|+.+|+.....+.+|+|+||....+
T Consensus        21 ~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~g   56 (492)
T PRK07121         21 ADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAG   56 (492)
T ss_pred             cCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCC
Confidence            589999999999999999998999999999988643

>TIGR02731 phytoene_desat phytoene desaturase

Probab=93.69  E-value=0.07  Score=56.99  Aligned_cols=37  Identities=11%  Similarity=-0.129  Sum_probs=33.1

Q ss_pred             EEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccc
Q psy14461         90 YLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFR  126 (535)
Q Consensus        90 ~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~  126 (535)
                      +|+|||+|.+|+++|..+...+.+|+|+|+.+.+++.
T Consensus         1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~   37 (453)
T TIGR02731         1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGK   37 (453)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCC
Confidence            3689999999999999988889999999999987654

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=93.67  E-value=0.53  Score=49.93  Aligned_cols=27  Identities=30%  Similarity=0.386  Sum_probs=23.5

Q ss_pred             EECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        246 VLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       246 ViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      |||+|..|+-+|..+++.|.+|.++++
T Consensus         1 VVG~G~AGl~AA~~Aa~~Ga~V~vlEK   27 (432)
T TIGR02485         1 VIGGGLAGLCAAIEARRAGASVLLLEA   27 (432)
T ss_pred             CCcccHHHHHHHHHHHhCCCcEEEEeC
Confidence            688888888888888888888888887

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=93.66  E-value=0.079  Score=57.24  Aligned_cols=60  Identities=15%  Similarity=0.170  Sum_probs=42.1

Q ss_pred             HHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcE-EEEEecCCCCCceEEEcCEEEEccCCC
Q psy14461        281 QEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMK-GVRGFHPESKEPFADVFKTVVNAMEKK  341 (535)
Q Consensus       281 ~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~-~v~~~~~~~G~~~~~~~D~vi~a~G~~  341 (535)
                      ..+.+.+.+.+++.|.++ +++.|++|..+ +++. .+.+.+..+|+.+++.+|.||.++...
T Consensus       232 ~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~-~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~  293 (492)
T TIGR02733       232 QTLSDRLVEALKRDGGNLLTGQRVTAIHTK-GGRAGWVVVVDSRKQEDLNVKADDVVANLPPQ  293 (492)
T ss_pred             HHHHHHHHHHHHhcCCEEeCCceEEEEEEe-CCeEEEEEEecCCCCceEEEECCEEEECCCHH
Confidence            457788888888899999 99999999876 3432 344432111212378999999998753

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>PRK05868 hypothetical protein; Validated

Probab=93.66  E-value=0.076  Score=55.19  Aligned_cols=35  Identities=11%  Similarity=-0.118  Sum_probs=31.3

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHL  123 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~  123 (535)
                      .+|+|+|+|++|+.+|+.+...+.+|+|||+.+..
T Consensus         2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~   36 (372)
T PRK05868          2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL   36 (372)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence            46899999999999999888889999999998753

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=93.66  E-value=0.058  Score=44.95  Aligned_cols=33  Identities=30%  Similarity=0.317  Sum_probs=30.2

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        240 WPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       240 ~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      .+++|+|||||.+|..-+..|.+.|++||++.+
T Consensus         6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~   38 (103)
T PF13241_consen    6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISP   38 (103)
T ss_dssp             TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEES
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECC
Confidence            468999999999999999999999999999986

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=93.65  E-value=0.062  Score=56.27  Aligned_cols=34  Identities=6%  Similarity=-0.083  Sum_probs=29.5

Q ss_pred             EEEEeeCCccHHHHHHHHHhhC--CCeEEEEecCCc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTN--QRRDELQERGSH  122 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~--~~~V~lie~~~~  122 (535)
                      ++|+|||+|++|+++|+.+...  +.+|+|+|+.+.
T Consensus         2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~   37 (403)
T PRK07333          2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA   37 (403)
T ss_pred             CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence            4689999999999999988766  489999999864

>PLN02576 protoporphyrinogen oxidase

Probab=93.62  E-value=0.07  Score=57.68  Aligned_cols=39  Identities=8%  Similarity=-0.092  Sum_probs=33.9

Q ss_pred             EEEEeeCCccHHHHHHHHHhhC-CCeEEEEecCCcccccc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTN-QRRDELQERGSHLSFRK  127 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~-~~~V~lie~~~~~~~~~  127 (535)
                      .+|+|||+|.+|+++|..+... +.+|+|+|+.+.+++..
T Consensus        13 ~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~   52 (496)
T PLN02576         13 KDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNI   52 (496)
T ss_pred             CCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCce
Confidence            3689999999999999888777 89999999999886653

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=93.56  E-value=0.081  Score=55.79  Aligned_cols=35  Identities=17%  Similarity=0.056  Sum_probs=30.1

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCC-CeEEEEecCCcc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQ-RRDELQERGSHL  123 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~-~~V~lie~~~~~  123 (535)
                      ++|+|||+|++|+++|+.+...+ .+|+|+|+.+.+
T Consensus         1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~   36 (414)
T TIGR03219         1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAF   36 (414)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcC
Confidence            36899999999999999887766 599999998754

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>KOG2404|consensus

Probab=93.54  E-value=0.51  Score=46.88  Aligned_cols=46  Identities=22%  Similarity=0.088  Sum_probs=35.4

Q ss_pred             CeEE-cceEEEEEEEeCCCcE-EEEEecCCCCCceEEEcCEEEEccCCCC
Q psy14461        295 GVSI-QCCVIEKVISSFDGMK-GVRGFHPESKEPFADVFKTVVNAMEKKF  342 (535)
Q Consensus       295 gV~i-~~~~v~~i~~~~~~~~-~v~~~~~~~G~~~~~~~D~vi~a~G~~p  342 (535)
                      -+++ .+++|+.|... ++++ -|++.+ .+|+...+.+|.|++|+|--.
T Consensus       159 ~~ki~~nskvv~il~n-~gkVsgVeymd-~sgek~~~~~~~VVlatGGf~  206 (477)
T KOG2404|consen  159 LVKILLNSKVVDILRN-NGKVSGVEYMD-ASGEKSKIIGDAVVLATGGFG  206 (477)
T ss_pred             HHhhhhcceeeeeecC-CCeEEEEEEEc-CCCCccceecCceEEecCCcC
Confidence            3678 99999999966 5665 466665 577777889999999998544

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=93.54  E-value=0.062  Score=56.07  Aligned_cols=32  Identities=13%  Similarity=-0.173  Sum_probs=29.1

Q ss_pred             EEEEeeCCccHHHHHHHHHhhC---CCeEEEEecC
Q psy14461         89 LYLDRIGDEGILLEEELKRQTN---QRRDELQERG  120 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~---~~~V~lie~~  120 (535)
                      ++|+|||+|++|+++|+.+...   +.+|+|+|+.
T Consensus         4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~   38 (395)
T PRK05732          4 MDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF   38 (395)
T ss_pred             CCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence            5789999999999999988776   9999999995

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=93.51  E-value=0.84  Score=54.68  Aligned_cols=100  Identities=22%  Similarity=0.291  Sum_probs=0.0

Q ss_pred             cCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccC-------------------------------------
Q psy14461        238 GAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHF-------------------------------------  279 (535)
Q Consensus       238 ~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~-------------------------------------  279 (535)
                      ....-.|+|||+|..|+-+|...++.|.+|.++++ +..-...                                     
T Consensus       406 ~t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s~~s~ggi~~~~t~~q~~~gi~D~~~~~~~d~~~~~~~  485 (1167)
T PTZ00306        406 GSLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNSAKATSGINGWGTRAQAKQDVLDGGKFFERDTHLSGKG  485 (1167)
T ss_pred             cCCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCchhhcccccccCCchhhhhhcccccHHHHHHHHHHhccC


Q ss_pred             ---------------------------------------------------------cHHHHHHHHHhhhcC---CeEE-
Q psy14461        280 ---------------------------------------------------------DQEMVRILLSSLTKA---GVSI-  298 (535)
Q Consensus       280 ---------------------------------------------------------~~~~~~~~~~~l~~~---gV~i-  298 (535)
                                                                               ...+...+.+.+++.   ||++ 
T Consensus       486 ~~~d~~lv~~~~~~s~e~idwL~~~Gv~f~~~~~~gg~~~~r~~~~~~~~~g~~~~~G~~i~~~l~~~~~~~~~~gv~i~  565 (1167)
T PTZ00306        486 GHCDPGLVKTLSVKSADAISWLSSLGVPLTVLSQLGGASRKRCHRAPDKKDGTPVPIGFTIMRTLEDHIRTKLSGRVTIM  565 (1167)
T ss_pred             CCCCHHHHHHHHHhhHHHHHHHHHcCCCceeeeccCCCCCCceeecCcccCCCcCCcHHHHHHHHHHHHHhhccCCcEEE


Q ss_pred             cceEEEEEEEeCC----------CcEEEEEecCC---CCCceEEEcCEEEEccC
Q psy14461        299 QCCVIEKVISSFD----------GMKGVRGFHPE---SKEPFADVFKTVVNAME  339 (535)
Q Consensus       299 ~~~~v~~i~~~~~----------~~~~v~~~~~~---~G~~~~~~~D~vi~a~G  339 (535)
                      +++.++++..+ +          ...-|..++ .   +|+...+.++.||+|||
T Consensus       566 ~~t~~~~LI~d-~~~~~~G~~~~~V~Gv~~~~-~~~~~g~~~~i~AkaVILATG  617 (1167)
T PTZ00306        566 TETTVTSLLSE-SSARPDGVREIRVTGVRYKQ-ASDASGQVMDLLADAVILATG  617 (1167)
T ss_pred             ECCEEEEEEec-CCcccCCCccceEEEEEEEe-cccCCCcEEEEEeceEEEecC

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=93.51  E-value=0.073  Score=49.25  Aligned_cols=34  Identities=35%  Similarity=0.338  Sum_probs=28.6

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL  276 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l  276 (535)
                      +|.|||+|..|..+|..+++.|.+|+++++ +.-+
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l   35 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEAL   35 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHH
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHH
Confidence            589999999999999999999999999997 4433

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=93.49  E-value=0.09  Score=56.74  Aligned_cols=34  Identities=29%  Similarity=0.384  Sum_probs=31.6

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcC
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRL  275 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~  275 (535)
                      .+|+|||+|.-|+-+|..|++.|.+|+|+|+ +.+
T Consensus         4 ~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~   38 (487)
T COG1233           4 YDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRV   38 (487)
T ss_pred             ccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCC
Confidence            5799999999999999999999999999998 654

>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional

Probab=93.47  E-value=0.078  Score=55.73  Aligned_cols=33  Identities=21%  Similarity=0.254  Sum_probs=29.5

Q ss_pred             cEEEEeCCCchhhHHHHHHHHHhcCCcceEEEEE
Q psy14461         59 RILIFTHAVLREENARAERYLNARGDRFAVLYLD   92 (535)
Q Consensus        59 ~v~v~~k~~cp~~~~~~k~~~~~~~~~~~~~~v~   92 (535)
                      +|.||++++|| +|.++|+++.+.|.+++.++|.
T Consensus         3 ~V~vys~~~Cp-~C~~aK~~L~~~gi~~~~idi~   35 (410)
T PRK12759          3 EVRIYTKTNCP-FCDLAKSWFGANDIPFTQISLD   35 (410)
T ss_pred             cEEEEeCCCCH-HHHHHHHHHHHCCCCeEEEECC
Confidence            58999999999 9999999999999988766654

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=93.43  E-value=0.09  Score=54.46  Aligned_cols=31  Identities=19%  Similarity=0.085  Sum_probs=29.5

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      -+|+|||||.+|+-+|..|++.|.+|+|+++
T Consensus         4 ~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~   34 (376)
T PRK11259          4 YDVIVIGLGSMGSAAGYYLARRGLRVLGLDR   34 (376)
T ss_pred             ccEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence            3699999999999999999999999999998

>PLN02268 probable polyamine oxidase

Probab=93.43  E-value=0.1  Score=55.39  Aligned_cols=35  Identities=29%  Similarity=0.399  Sum_probs=31.6

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL  276 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l  276 (535)
                      .+|+|||+|.+|+-+|..|.+.|.+|+|++. +++.
T Consensus         1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~G   36 (435)
T PLN02268          1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIG   36 (435)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCC
Confidence            3799999999999999999999999999997 6653

>PRK08275 putative oxidoreductase; Provisional

Probab=93.42  E-value=0.087  Score=57.83  Aligned_cols=45  Identities=27%  Similarity=0.161  Sum_probs=35.5

Q ss_pred             CceEcCCCCCcCCCCEEEeCCcCCCCCCcHHHHHHHHHHHHHHHh
Q psy14461        360 SYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLY  404 (535)
Q Consensus       360 G~i~vd~~~~T~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~  404 (535)
                      |.|.||+.++|++||+||+|||...+......|.-.|++|+.++.
T Consensus       357 Ggi~~d~~~~t~i~gl~a~Ge~~~~~~~~~~~~~~~G~~a~~~~~  401 (554)
T PRK08275        357 SGVWVNEKAETTVPGLYAAGDMASVPHNYMLGAFTYGWFAGENAA  401 (554)
T ss_pred             CcEEECCCCccCCCCEEECcccCCchhHHHHHHHHHHHHHHHHHH
Confidence            569999999999999999999872133344457888888888875

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=93.40  E-value=0.092  Score=54.46  Aligned_cols=30  Identities=23%  Similarity=0.264  Sum_probs=28.9

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      +|+|||||.+|+-+|..|++.|.+|+|+++
T Consensus         2 dvvIIGaGi~G~s~A~~La~~g~~V~l~e~   31 (380)
T TIGR01377         2 DVIVVGAGIMGCFAAYHLAKHGKKTLLLEQ   31 (380)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence            589999999999999999999999999998

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>KOG2415|consensus

Probab=93.39  E-value=0.078  Score=54.14  Aligned_cols=41  Identities=10%  Similarity=0.054  Sum_probs=32.8

Q ss_pred             cceEEEEEeeCCccHHHHHHHHHh------hCCCeEEEEecCCcccc
Q psy14461         85 RFAVLYLDRIGDEGILLEEELKRQ------TNQRRDELQERGSHLSF  125 (535)
Q Consensus        85 ~~~~~~v~iiG~G~aG~~~al~~~------~~~~~V~lie~~~~~~~  125 (535)
                      ..+.++|+|+|+||||+++|++..      ....+|.|+||...++.
T Consensus        73 ~~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~Gg  119 (621)
T KOG2415|consen   73 ESEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGG  119 (621)
T ss_pred             hhccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCC
Confidence            346789999999999999998543      34578999999986543

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=93.36  E-value=0.072  Score=56.64  Aligned_cols=32  Identities=9%  Similarity=-0.050  Sum_probs=28.5

Q ss_pred             EEEeeCCccHHHHHHHHHhh----CCCeEEEEecCC
Q psy14461         90 YLDRIGDEGILLEEELKRQT----NQRRDELQERGS  121 (535)
Q Consensus        90 ~v~iiG~G~aG~~~al~~~~----~~~~V~lie~~~  121 (535)
                      +|+|||+|++|+++|+.+..    .+.+|+|||+.+
T Consensus         2 DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~   37 (437)
T TIGR01989         2 DVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVD   37 (437)
T ss_pred             cEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCC
Confidence            68999999999999998876    689999999953

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=93.32  E-value=0.11  Score=55.01  Aligned_cols=35  Identities=29%  Similarity=0.252  Sum_probs=32.5

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL  276 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l  276 (535)
                      +||+|+|+|..|+-+|..|+..|.+||++++ +.+.
T Consensus         1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~G   36 (485)
T COG3349           1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLG   36 (485)
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccC
Confidence            5899999999999999999999999999998 7664

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=93.29  E-value=0.07  Score=56.08  Aligned_cols=32  Identities=16%  Similarity=0.044  Sum_probs=29.7

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecC
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERG  120 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~  120 (535)
                      .+|+|+|+|++|+++|+.+...+.+|+|+|+.
T Consensus         5 ~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~   36 (405)
T PRK08850          5 VDVAIIGGGMVGLALAAALKESDLRIAVIEGQ   36 (405)
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence            57899999999999999888889999999986

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=93.20  E-value=0.091  Score=61.08  Aligned_cols=47  Identities=23%  Similarity=0.184  Sum_probs=37.0

Q ss_pred             CCceEcCCCCCcCCCCEEEeCCcCCCCCCcHHHHHHHHHHHHHHHhC
Q psy14461        359 KSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYG  405 (535)
Q Consensus       359 ~G~i~vd~~~~T~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g  405 (535)
                      .|.|.||..++|++||+||+|||+.+.......|.-.|+.|+.++..
T Consensus       361 ~GGi~vd~~~~T~v~GLfAaGE~a~~~~nsl~~a~v~G~~Ag~~a~~  407 (897)
T PRK13800        361 ASGVWVDEHARTTVPGLYAAGDLACVPHNYMIGAFVFGDLAGAHAAG  407 (897)
T ss_pred             cceEEecCCCcccCCCeEechhccCcchhhhhhHHHhHHHHHHHHHH
Confidence            47899999999999999999999722233444578888888888753

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=93.19  E-value=0.13  Score=46.51  Aligned_cols=32  Identities=28%  Similarity=0.317  Sum_probs=30.0

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEE
Q psy14461        240 WPGKTLVLGGSLMAVEIAATLNFLGVPVTLVY  271 (535)
Q Consensus       240 ~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~  271 (535)
                      .+++|+|||||.+|..-+..|.+.|++|+++.
T Consensus        12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs   43 (157)
T PRK06719         12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS   43 (157)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence            46899999999999999999999999999995

>PRK07208 hypothetical protein; Provisional

Probab=93.15  E-value=0.13  Score=55.36  Aligned_cols=36  Identities=19%  Similarity=0.216  Sum_probs=32.5

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL  276 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l  276 (535)
                      .++|+|||||.+|+-+|..|+++|.+|+++++ +++.
T Consensus         4 ~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~G   40 (479)
T PRK07208          4 KKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVG   40 (479)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence            46899999999999999999999999999998 6543

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=93.08  E-value=0.12  Score=55.79  Aligned_cols=34  Identities=26%  Similarity=0.316  Sum_probs=31.7

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcC
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRL  275 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~  275 (535)
                      ++|+|||+|..|+-+|..|++.|.+|+++++ +.+
T Consensus         2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~   36 (492)
T TIGR02733         2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQP   36 (492)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            5799999999999999999999999999998 655

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>PRK06126 hypothetical protein; Provisional

Probab=93.06  E-value=0.099  Score=57.31  Aligned_cols=34  Identities=18%  Similarity=0.032  Sum_probs=31.5

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSH  122 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~  122 (535)
                      .+|+|||+|++|+.+|+.+...+.+|+|+|+.+.
T Consensus         8 ~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~   41 (545)
T PRK06126          8 TPVLIVGGGPVGLALALDLGRRGVDSILVERKDG   41 (545)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            5789999999999999999999999999999874

>PRK07512 L-aspartate oxidase; Provisional

Probab=92.95  E-value=0.75  Score=50.01  Aligned_cols=100  Identities=17%  Similarity=0.252  Sum_probs=0.0

Q ss_pred             hccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCc----------------------------------
Q psy14461        236 RLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFD----------------------------------  280 (535)
Q Consensus       236 ~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~----------------------------------  280 (535)
                      ++......|+|||+|..|+-+|..++  +.+|+++++ +.....-.                                  
T Consensus         4 ~~~~~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~~~gg~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~g~~d~   81 (513)
T PRK07512          4 DLRILTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPLGEGASSAWAQGGIAAALGPDDSPALHAADTLAAGAGLCDP   81 (513)
T ss_pred             cccCCcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCCCCCcchHHhhhccccccCCCCCHHHHHHHHHHhhCCCCCH


Q ss_pred             ------------------------------------------------------HHHHHHHHHhhhcC-CeEE-cceEEE
Q psy14461        281 ------------------------------------------------------QEMVRILLSSLTKA-GVSI-QCCVIE  304 (535)
Q Consensus       281 ------------------------------------------------------~~~~~~~~~~l~~~-gV~i-~~~~v~  304 (535)
                                                                            ..+.+.+.+.+++. ||++ .++.++
T Consensus        82 ~~v~~~~~~s~~~i~wL~~~Gv~f~~~~~G~~~~~~~~~~~~~r~~~~~g~~~G~~l~~~L~~~~~~~~gV~i~~~~~v~  161 (513)
T PRK07512         82 AVAALITAEAPAAIEDLLRLGVPFDRDADGRLALGLEAAHSRRRIVHVGGDGAGAAIMRALIAAVRATPSITVLEGAEAR  161 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCccccCCCCccccccccCccCCcEEEcCCCCCHHHHHHHHHHHHHhCCCCEEEECcChh


Q ss_pred             EEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccC
Q psy14461        305 KVISSFDGMKGVRGFHPESKEPFADVFKTVVNAME  339 (535)
Q Consensus       305 ~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G  339 (535)
                      ++..+++.-+-+...+  ++....+.++.||+|+|
T Consensus       162 ~Li~~~g~v~Gv~~~~--~~~~~~i~Ak~VVLATG  194 (513)
T PRK07512        162 RLLVDDGAVAGVLAAT--AGGPVVLPARAVVLATG  194 (513)
T ss_pred             heeecCCEEEEEEEEe--CCeEEEEECCEEEEcCC

>TIGR02730 carot_isom carotene isomerase

Probab=92.90  E-value=0.1  Score=56.37  Aligned_cols=55  Identities=24%  Similarity=0.280  Sum_probs=43.4

Q ss_pred             HHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCc-EEEEEecCCCCCceEEEcCEEEEccCCC
Q psy14461        281 QEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGM-KGVRGFHPESKEPFADVFKTVVNAMEKK  341 (535)
Q Consensus       281 ~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~-~~v~~~~~~~G~~~~~~~D~vi~a~G~~  341 (535)
                      ..+.+.+.+.+++.|+++ .++.|++|..+ +++ ..|.+   .+|+  ++++|.||++.|..
T Consensus       229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~-~~~~~gv~~---~~g~--~~~ad~vV~a~~~~  285 (493)
T TIGR02730       229 GQIAESLVKGLEKHGGQIRYRARVTKIILE-NGKAVGVKL---ADGE--KIYAKRIVSNATRW  285 (493)
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCeeeEEEec-CCcEEEEEe---CCCC--EEEcCEEEECCChH
Confidence            467778888899999999 99999999875 343 34555   3676  78999999998864

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>KOG1346|consensus

Probab=92.84  E-value=0.13  Score=52.54  Aligned_cols=46  Identities=15%  Similarity=0.053  Sum_probs=36.8

Q ss_pred             cCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCC
Q psy14461        293 KAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAA  346 (535)
Q Consensus       293 ~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~  346 (535)
                      .-||.+ .+..+.+|... +  ..|.++   ||.  +|.+|-+++|||.+|....
T Consensus       269 nGGvAvl~G~kvvkid~~-d--~~V~Ln---DG~--~I~YdkcLIATG~~Pk~l~  315 (659)
T KOG1346|consen  269 NGGVAVLRGRKVVKIDEE-D--KKVILN---DGT--TIGYDKCLIATGVRPKKLQ  315 (659)
T ss_pred             cCceEEEeccceEEeecc-c--CeEEec---CCc--EeehhheeeecCcCcccch
Confidence            458888 99999999764 2  346664   898  8999999999999997654

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=92.77  E-value=0.12  Score=56.31  Aligned_cols=37  Identities=8%  Similarity=-0.115  Sum_probs=32.6

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccc
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSF  125 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~  125 (535)
                      ..+|+|||+| +|+.+|+.+...+.+|+|+||.+..+.
T Consensus         7 ~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg   43 (513)
T PRK12837          7 EVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGG   43 (513)
T ss_pred             ccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence            3589999999 999999999999999999999886543

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=92.73  E-value=0.33  Score=49.73  Aligned_cols=80  Identities=20%  Similarity=0.161  Sum_probs=52.1

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc-C--------cCCccCcHHHHHHHHHhhhcCCeEEcceEEEEEEEeCCCc
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-R--------RLLKHFDQEMVRILLSSLTKAGVSIQCCVIEKVISSFDGM  313 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~--------~~l~~~~~~~~~~~~~~l~~~gV~i~~~~v~~i~~~~~~~  313 (535)
                      ++.|+|.|++|+-.|..|++.|.+|+.++- +        ...|-+++.+.+.+++...                  .++
T Consensus         2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~------------------~gR   63 (414)
T COG1004           2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLA------------------SGR   63 (414)
T ss_pred             ceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccc------------------cCc
Confidence            689999999999999999999999999975 2        1234445554444433221                  122


Q ss_pred             EEEEEecCCCCCceEEEcCEEEEccCCCCCC
Q psy14461        314 KGVRGFHPESKEPFADVFKTVVNAMEKKFDF  344 (535)
Q Consensus       314 ~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~  344 (535)
                      +..+.    |-+.-.-.+|.+++|+|..|..
T Consensus        64 l~fTt----d~~~a~~~adv~fIavgTP~~~   90 (414)
T COG1004          64 LRFTT----DYEEAVKDADVVFIAVGTPPDE   90 (414)
T ss_pred             EEEEc----CHHHHHhcCCEEEEEcCCCCCC
Confidence            22222    2221134788999999977764

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=92.69  E-value=0.1  Score=57.40  Aligned_cols=33  Identities=6%  Similarity=-0.071  Sum_probs=30.3

Q ss_pred             EEEeeCCccHHHHHHHHHhhCCCeEEEEecCCc
Q psy14461         90 YLDRIGDEGILLEEELKRQTNQRRDELQERGSH  122 (535)
Q Consensus        90 ~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~  122 (535)
                      ||+|||+|.+|+.+|+.+...+.+|+|+||...
T Consensus         1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~   33 (566)
T TIGR01812         1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYP   33 (566)
T ss_pred             CEEEECccHHHHHHHHHHHHCCCcEEEEeccCC
Confidence            579999999999999999888999999999874

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PLN02985 squalene monooxygenase

Probab=92.68  E-value=0.12  Score=56.03  Aligned_cols=35  Identities=14%  Similarity=-0.043  Sum_probs=31.6

Q ss_pred             eEEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCC
Q psy14461         87 AVLYLDRIGDEGILLEEELKRQTNQRRDELQERGS  121 (535)
Q Consensus        87 ~~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~  121 (535)
                      ..++|+|||+|++|+++|+.+...+.+|+|+|+..
T Consensus        42 ~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~   76 (514)
T PLN02985         42 GATDVIIVGAGVGGSALAYALAKDGRRVHVIERDL   76 (514)
T ss_pred             CCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence            34689999999999999998888899999999975

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=92.64  E-value=0.14  Score=53.55  Aligned_cols=33  Identities=15%  Similarity=0.337  Sum_probs=30.3

Q ss_pred             cEEEECCChHHHHHHHHHHhC--CCcEEEEEc-CcC
Q psy14461        243 KTLVLGGSLMAVEIAATLNFL--GVPVTLVYS-RRL  275 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~--g~~Vtlv~~-~~~  275 (535)
                      +|+|||||.+|+-+|..|+++  |.+|+++++ +.+
T Consensus         4 dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~   39 (393)
T PRK11728          4 DFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGP   39 (393)
T ss_pred             cEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCcc
Confidence            699999999999999999999  999999998 533

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=92.64  E-value=0.14  Score=52.80  Aligned_cols=30  Identities=17%  Similarity=0.343  Sum_probs=28.8

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      +|+|||||.+|+-+|..|++.|.+|+++++
T Consensus         2 dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~   31 (365)
T TIGR03364         2 DLIIVGAGILGLAHAYAAARRGLSVTVIER   31 (365)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeC
Confidence            589999999999999999999999999987

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=92.64  E-value=0.11  Score=57.48  Aligned_cols=34  Identities=9%  Similarity=0.005  Sum_probs=30.9

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSH  122 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~  122 (535)
                      .||+|||+|.||+.||+.....+.+|+|+||...
T Consensus        13 ~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~   46 (591)
T PRK07057         13 FDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFP   46 (591)
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCcEEEEeccCC
Confidence            5889999999999999998888899999999753

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=92.60  E-value=0.14  Score=53.91  Aligned_cols=30  Identities=30%  Similarity=0.382  Sum_probs=29.0

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      +|+|||||.+|+-+|..|++.|.+|+|+++
T Consensus         2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~   31 (416)
T PRK00711          2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDR   31 (416)
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCEEEEEeC
Confidence            599999999999999999999999999998

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=92.60  E-value=0.11  Score=57.33  Aligned_cols=34  Identities=12%  Similarity=-0.119  Sum_probs=31.0

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSH  122 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~  122 (535)
                      .||+|||+|.||+.+|+.....+.+|+|+||...
T Consensus         4 ~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~   37 (589)
T PRK08641          4 GKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPV   37 (589)
T ss_pred             ccEEEECchHHHHHHHHHHHHcCCcEEEEEccCC
Confidence            3789999999999999999888999999999874

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=92.57  E-value=0.12  Score=57.61  Aligned_cols=35  Identities=14%  Similarity=0.100  Sum_probs=31.8

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCc
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSH  122 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~  122 (535)
                      ..+|+|||+|.||+.||+.+...+.+|+|+||...
T Consensus         8 ~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~   42 (626)
T PRK07803          8 SYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLF   42 (626)
T ss_pred             eecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCC
Confidence            36899999999999999999888999999999864

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=92.55  E-value=0.13  Score=57.21  Aligned_cols=36  Identities=11%  Similarity=-0.077  Sum_probs=32.1

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcc
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHL  123 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~  123 (535)
                      ..||+|||+|.||+.||+.....+.+|+|+||....
T Consensus        29 ~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~   64 (617)
T PTZ00139         29 TYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPT   64 (617)
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCC
Confidence            368999999999999999998888999999998753

>TIGR02734 crtI_fam phytoene desaturase

Probab=92.52  E-value=0.13  Score=55.63  Aligned_cols=32  Identities=28%  Similarity=0.494  Sum_probs=29.9

Q ss_pred             EEEECCChHHHHHHHHHHhCCCcEEEEEc-CcC
Q psy14461        244 TLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRL  275 (535)
Q Consensus       244 vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~  275 (535)
                      |+|||+|..|+-+|..|++.|.+|+|+++ +.+
T Consensus         1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~   33 (502)
T TIGR02734         1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKP   33 (502)
T ss_pred             CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCC
Confidence            68999999999999999999999999998 664

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=92.50  E-value=0.14  Score=56.27  Aligned_cols=33  Identities=12%  Similarity=-0.020  Sum_probs=31.1

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCC
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGS  121 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~  121 (535)
                      .||+|||+|.+|+.+|+.....+.+|+|+||.+
T Consensus         5 ~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~   37 (549)
T PRK12834          5 ADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN   37 (549)
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            578999999999999999988999999999988

>PRK07804 L-aspartate oxidase; Provisional

Probab=92.49  E-value=0.12  Score=56.55  Aligned_cols=36  Identities=14%  Similarity=0.031  Sum_probs=32.2

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcc
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHL  123 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~  123 (535)
                      ..||+|||+|.||+.+|+.....+.+|+|+||....
T Consensus        16 ~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~   51 (541)
T PRK07804         16 AADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALD   51 (541)
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCC
Confidence            368999999999999999998888999999998754

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=92.48  E-value=0.12  Score=56.89  Aligned_cols=34  Identities=9%  Similarity=-0.166  Sum_probs=31.1

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSH  122 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~  122 (535)
                      .||+|||+|.||+.||+.....+.+|+|+||...
T Consensus         6 ~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~   39 (566)
T PRK06452          6 YDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFP   39 (566)
T ss_pred             CcEEEECccHHHHHHHHHHHHCCCcEEEEEccCC
Confidence            5789999999999999999888899999999863

>PRK12839 hypothetical protein; Provisional

Probab=92.45  E-value=1.8  Score=47.66  Aligned_cols=97  Identities=15%  Similarity=0.115  Sum_probs=0.0

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCc-----------------------------------------
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFD-----------------------------------------  280 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~-----------------------------------------  280 (535)
                      .|+|||+|..|+-+|..+++.|.+|.++++ +.+.....                                         
T Consensus        10 dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~   89 (572)
T PRK12839         10 DVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGATAWSGGWMWTPGNSLARADGVVEDKEEPRTYLEHRLGENYDAD   89 (572)
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCccccccCCeeecCCchhhhhccCcCchhhHHHHHHHHhCCCCCHH


Q ss_pred             ---------HHHHHHHHHhh------------------------------------------------------------
Q psy14461        281 ---------QEMVRILLSSL------------------------------------------------------------  291 (535)
Q Consensus       281 ---------~~~~~~~~~~l------------------------------------------------------------  291 (535)
                               ++..+.+++..                                                            
T Consensus        90 ~~~~~~~~s~e~i~wL~~~~~v~f~~~~~~~d~~~~~~~~~~~gr~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~g~~~~  169 (572)
T PRK12839         90 KVDALLDGAPEMVDFFEKKTALQFVPGAKIADIYGDLPGAGTGHRSVGPKPVNLRKLGPDVAALLRHQLYETSFLGMGIM  169 (572)
T ss_pred             HHHHHHHhCHHHHHHHHhCCceEEEECCCCCCCCCCCCCCCCCCceecCCCCChhhcChHHHHhcCCCcccccccccccc


Q ss_pred             -------------------------------------------------------hcCCeEE-cceEEEEEEEeCCCcEE
Q psy14461        292 -------------------------------------------------------TKAGVSI-QCCVIEKVISSFDGMKG  315 (535)
Q Consensus       292 -------------------------------------------------------~~~gV~i-~~~~v~~i~~~~~~~~~  315 (535)
                                                                             ++.|+++ .++.++++..++++++.
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~  249 (572)
T PRK12839        170 AGPDLQAFLHATQDPKGFVHAARRVIVHMWDLATHRRGMQLVNGTALTGRLLRSADDLGVDLRVSTSATSLTTDKNGRVT  249 (572)
T ss_pred             cHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHhhccCCcccccHHHHHHHHHHHHHHCCCEEEcCCEEEEEEECCCCcEE


Q ss_pred             EEEecCCCCCceEEEcCEEEEccC
Q psy14461        316 VRGFHPESKEPFADVFKTVVNAME  339 (535)
Q Consensus       316 v~~~~~~~G~~~~~~~D~vi~a~G  339 (535)
                      =......+|+.....++.||+|+|
T Consensus       250 GV~~~~~~g~~~i~aak~VVLAtG  273 (572)
T PRK12839        250 GVRVQGPDGAVTVEATRGVVLATG  273 (572)
T ss_pred             EEEEEeCCCcEEEEeCCEEEEcCC

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=92.44  E-value=0.14  Score=55.64  Aligned_cols=34  Identities=15%  Similarity=-0.176  Sum_probs=31.8

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSH  122 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~  122 (535)
                      ++|+|||+|..|+.+|+.+...+.+|+|+|+++.
T Consensus         7 ~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~   40 (508)
T PRK12266          7 YDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDL   40 (508)
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            6899999999999999999999999999999864

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=92.43  E-value=0.14  Score=53.64  Aligned_cols=34  Identities=18%  Similarity=-0.042  Sum_probs=30.5

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSH  122 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~  122 (535)
                      .+|+|||+|.+|+.+|+.+...+.+|+|+|+.+.
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~   36 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPV   36 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCc
Confidence            3689999999999999999999999999997653

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=92.38  E-value=0.17  Score=54.09  Aligned_cols=34  Identities=26%  Similarity=0.348  Sum_probs=31.3

Q ss_pred             CcEEEECCChHHHHHHHHHHhC----CCcEEEEEc-CcC
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFL----GVPVTLVYS-RRL  275 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~----g~~Vtlv~~-~~~  275 (535)
                      ++|+|||||.+|+-+|..|++.    |.+|+|+++ +++
T Consensus         3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~   41 (462)
T TIGR00562         3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRV   41 (462)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcC
Confidence            5799999999999999999998    999999998 655

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=92.30  E-value=0.14  Score=56.53  Aligned_cols=37  Identities=14%  Similarity=0.126  Sum_probs=33.1

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSF  125 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~  125 (535)
                      .+|+|||+|.+|+.+|+.....+.+|+|+||....++
T Consensus        12 ~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG   48 (584)
T PRK12835         12 VDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGG   48 (584)
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCc
Confidence            5789999999999999999899999999999986543

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=92.28  E-value=0.19  Score=47.35  Aligned_cols=33  Identities=21%  Similarity=0.286  Sum_probs=30.5

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        240 WPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       240 ~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      ..++|+|||||.+|...|..|.+.|.+|+++.+
T Consensus         9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~   41 (202)
T PRK06718          9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISP   41 (202)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcC
Confidence            468999999999999999999999999999974

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=92.27  E-value=0.18  Score=52.42  Aligned_cols=32  Identities=22%  Similarity=0.351  Sum_probs=30.1

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      ..+|+|||||.+|+-+|..|++.|.+|+++++
T Consensus         4 ~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~   35 (387)
T COG0665           4 KMDVVIIGGGIVGLSAAYYLAERGADVTVLEA   35 (387)
T ss_pred             cceEEEECCcHHHHHHHHHHHHcCCEEEEEec
Confidence            46899999999999999999999999999986

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=92.26  E-value=0.19  Score=47.47  Aligned_cols=33  Identities=24%  Similarity=0.240  Sum_probs=30.6

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        240 WPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       240 ~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      .+++|+|||||.+|..-+..|.+.|++||++.+
T Consensus         8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp   40 (205)
T TIGR01470         8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAE   40 (205)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcC
Confidence            358999999999999999999999999999975

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=92.24  E-value=0.2  Score=50.04  Aligned_cols=64  Identities=16%  Similarity=0.078  Sum_probs=41.5

Q ss_pred             HHHHHHHhhhcCCeEE-cceEEEEEEEeC-CCcE-EEEEecCCCCC--ceEEEcCEEEEccCCCCCCCCC
Q psy14461        283 MVRILLSSLTKAGVSI-QCCVIEKVISSF-DGMK-GVRGFHPESKE--PFADVFKTVVNAMEKKFDFAAL  347 (535)
Q Consensus       283 ~~~~~~~~l~~~gV~i-~~~~v~~i~~~~-~~~~-~v~~~~~~~G~--~~~~~~D~vi~a~G~~p~~~~l  347 (535)
                      ....+...++..|+++ +++.|++|..+. +++. .|++.+. ++.  ...+.++.||+|.|.--...+|
T Consensus       195 ~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~-~~~~~~~~~~ak~VIlaAGai~Tp~LL  263 (296)
T PF00732_consen  195 ATTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDN-DGGVQRRIVAAKEVILAAGAIGTPRLL  263 (296)
T ss_dssp             HHHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEET-TTSEEEEEEEEEEEEE-SHHHHHHHHH
T ss_pred             hhcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeec-CCcceeeeccceeEEeccCCCCChhhh
Confidence            3455666666669999 999999995431 3333 4666542 333  3577899999999965444443

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>TIGR02731 phytoene_desat phytoene desaturase

Probab=92.23  E-value=0.18  Score=53.76  Aligned_cols=33  Identities=18%  Similarity=0.201  Sum_probs=30.5

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcC
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRL  275 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~  275 (535)
                      +|+|||+|..|+-+|..|++.|.+|+++++ +++
T Consensus         1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~   34 (453)
T TIGR02731         1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVL   34 (453)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            589999999999999999999999999998 654

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=92.22  E-value=0.12  Score=56.58  Aligned_cols=36  Identities=11%  Similarity=-0.009  Sum_probs=32.3

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcc
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHL  123 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~  123 (535)
                      ..+|+|||+|++|+.+|+.+...+.+|+|||+.+..
T Consensus        23 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~   58 (547)
T PRK08132         23 RHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTL   58 (547)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence            467899999999999999998899999999998743

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=92.16  E-value=0.14  Score=56.67  Aligned_cols=33  Identities=12%  Similarity=-0.066  Sum_probs=29.2

Q ss_pred             EEEeeCCccHHHHHHHHHh----hCCCeEEEEecCCc
Q psy14461         90 YLDRIGDEGILLEEELKRQ----TNQRRDELQERGSH  122 (535)
Q Consensus        90 ~v~iiG~G~aG~~~al~~~----~~~~~V~lie~~~~  122 (535)
                      +|+|||+|.||+.||+...    ..+.+|+|+||...
T Consensus         1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~   37 (614)
T TIGR02061         1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANL   37 (614)
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCC
Confidence            5799999999999999886    56789999999874

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=92.15  E-value=0.14  Score=56.83  Aligned_cols=35  Identities=11%  Similarity=-0.009  Sum_probs=31.4

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCc
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSH  122 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~  122 (535)
                      ..||+|||+|.||+.||+.....+.+|+|+||...
T Consensus        12 ~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~   46 (598)
T PRK09078         12 KYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFP   46 (598)
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCC
Confidence            36899999999999999999888899999999863

>KOG3851|consensus

Probab=92.14  E-value=0.09  Score=51.93  Aligned_cols=98  Identities=20%  Similarity=0.211  Sum_probs=59.1

Q ss_pred             CcEEEECCChHHHHHHHHHHhC-CC-cEEEEEc--CcCC-ccC---cHHHHHHHH-----HhhhcCCeEEcceEEEEEEE
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFL-GV-PVTLVYS--RRLL-KHF---DQEMVRILL-----SSLTKAGVSIQCCVIEKVIS  308 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~-g~-~Vtlv~~--~~~l-~~~---~~~~~~~~~-----~~l~~~gV~i~~~~v~~i~~  308 (535)
                      -+|+|||||.-|+-+|.-+.+. |. +|-|+++  .+.. |.+   ...+...-.     ..+--.|.......|+++++
T Consensus        40 ~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLvGgGl~~l~~srr~~a~liP~~a~wi~ekv~~f~P  119 (446)
T KOG3851|consen   40 FKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLVGGGLKSLDSSRRKQASLIPKGATWIKEKVKEFNP  119 (446)
T ss_pred             eEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcceEEeccchhhhhhccCcccccccCCcHHHHHHHHhcCC
Confidence            4799999999999999888765 54 8889987  3332 221   111110000     01111122222245666665


Q ss_pred             eCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCC
Q psy14461        309 SFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAAL  347 (535)
Q Consensus       309 ~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l  347 (535)
                      ++ +  +|.+   .+|+  +|.+|.+++|+|..-+-+.+
T Consensus       120 ~~-N--~v~t---~gg~--eIsYdylviA~Giql~y~~I  150 (446)
T KOG3851|consen  120 DK-N--TVVT---RGGE--EISYDYLVIAMGIQLDYGKI  150 (446)
T ss_pred             Cc-C--eEEc---cCCc--EEeeeeEeeeeeceeccchh
Confidence            42 2  3555   3787  89999999999988776554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	535
2nvk_X	488	Crystal Structure Of Thioredoxin Reductase From Dro		5e-37
3dh9_A	482	Crystal Structure Of Drosophila Thioredoxin Reducta		5e-37
3dgh_A	483	Crystal Structure Of Drosophila Thioredoxin Reducta		6e-37
3h4k_A	598	Crystal Structure Of The Wild Type Thioredoxin Glut		1e-36
2x8c_A	598	Thioredoxin Glutathione Reductase From Schistosoma		1e-36
2v6o_A	596	Structure Of Schistosoma Mansoni Thioredoxin-Glutat		1e-36
3ean_A	499	Crystal Structure Of Recombinant Rat Selenoprotein		1e-32
1h6v_A	499	Mammalian Thioredoxin Reductase Length = 499		1e-32
4b1b_A	542	Crystal Structure Of Plasmodium Falciparum Oxidised		3e-31
1zdl_A	517	Crystal Structure Of Mouse Thioredoxin Reductase Ty		3e-31
3dgz_A	488	Crystal Structure Of Mouse Mitochondrial Thioredoxi		3e-31
2zz0_A	513	Crystal Structure Of Human Thioredoxin Reductase I		1e-29
2cfy_A	521	Crystal Structure Of Human Thioredoxin Reductase 1		2e-29
3qfa_A	519	Crystal Structure Of The Human Thioredoxin Reductas		2e-29
2j3n_A	519	X-Ray Structure Of Human Thioredoxin Reductase 1 Le		2e-29
1ger_A	450	The Structure Of Glutathione Reductase From Escheri		4e-26
1grg_A	478	Substrate Binding And Catalysis By Glutathione Redu		2e-24
1dnc_A	478	Human Glutathione Reductase Modified By Diglutathio		2e-24
3djg_X	477	Catalytic Cycle Of Human Glutathione Reductase Near		2e-24
1bwc_A	478	Structure Of Human Glutathione Reductase Complexed		2e-24
2aaq_A	479	Crystal Structure Analysis Of The Human Glutahione		3e-24
1xan_A	461	Human Glutathione Reductase In Complex With A Xanth		3e-24
1grt_A	478	Human Glutathione Reductase A34eR37W MUTANT Length		3e-24
2grt_A	461	Human Glutathione Reductase A34e, R37w Mutant, Oxid		4e-24
1k4q_A	463	Human Glutathione Reductase Inactivated By Peroxyni		5e-24
1ges_A	450	Anatomy Of An Engineered Nad-Binding Site Length =		5e-24
1gsn_A	478	Human Glutathione Reductase Modified By Dinitrosogl		2e-23
2r9z_A	463	Glutathione Amide Reductase From Chromatium Gracile		2e-21
4dna_A	463	Crystal Structure Of Putative Glutathione Reductase		7e-21
1onf_A	500	Crystal Structure Of Plasmodium Falciparum Glutathi		2e-20
2hqm_A	479	Crystal Structure Of Glutathione Reductase Glr1 Fro		4e-20
3o0h_A	484	Crystal Structure Of Glutathione Reductase From Bar		6e-18
1ebd_A	455	Dihydrolipoamide Dehydrogenase Complexed With The B		7e-18
2x50_A	510	Crystal Structure Of Trypanothione Reductase From L		2e-15
2jk6_A	511	Structure Of Trypanothione Reductase From Leishmani		2e-15
1dxl_A	470	Dihydrolipoamide Dehydrogenase Of Glycine Decarboxy		4e-13
2woi_A	495	Trypanothione Reductase From Trypanosoma Brucei Len		9e-13
2wba_A	492	Properties Of Trypanothione Reductase From T. Bruce		1e-12
2tpr_A	490	X-ray Structure Of Trypanothione Reductase From Cri		2e-12
1fea_A	490	Unliganded Crithidia Fasciculata Trypanothione Redu		2e-12
1tyt_A	487	Crystal And Molecular Structure Of Crithidia Fascic		2e-12
1typ_A	487	Substrate Interactions Between Trypanothione Reduct		2e-12
1lpf_A	477	Three-Dimensional Structure Of Lipoamide Dehydrogen		5e-11
1nda_A	491	The Structure Of Trypanosoma Cruzi Trypanothione Re		4e-10
1aog_A	485	Trypanosoma Cruzi Trypanothione Reductase (Oxidized		6e-10
1gxf_A	492	Crystal Structure Of Trypanosoma Cruzi Trypanothion		6e-10
1bzl_A	486	Crystal Structure Of Trypanosoma Cruzi Trypanothion		6e-10
3lad_A	476	Refined Crystal Structure Of Lipoamide Dehydrogenas		1e-09
2eq7_A	455	Crystal Structure Of Lipoamide Dehydrogenase From T		1e-09
3urh_A	491	Crystal Structure Of A Dihydrolipoamide Dehydrogena		7e-09
1zk7_A	467	Crystal Structure Of Tn501 Mera Length = 467		9e-08
2eq6_A	464	Crystal Structure Of Lipoamide Dehydrogenase From T		1e-07
3rnm_A	495	The Crystal Structure Of The Subunit Binding Of Hum		2e-07
1zmc_A	474	Crystal Structure Of Human Dihydrolipoamide Dehydro		2e-07
1zy8_A	474	The Crystal Structure Of Dihydrolipoamide Dehydroge		2e-07
1lvl_A	458	The Refined Structure Of Pseudomonas Putida Lipoami		5e-07
2qae_A	468	Crystal Structure Analysis Of Trypanosoma Cruzi Lip		3e-06
3ic9_A	492	The Structure Of Dihydrolipoamide Dehydrogenase Fro		3e-05
1mo9_A	523	Nadph Dependent 2-Ketopropyl Coenzyme M Oxidoreduct		1e-04
3l8k_A	466	Crystal Structure Of A Dihydrolipoyl Dehydrogenase		1e-04
2a8x_A	464	Crystal Structure Of Lipoamide Dehydrogenase From M		4e-04
3ii4_A	466	Structure Of Mycobacterial Lipoamide Dehydrogenase		5e-04

>pdb|2NVK|X Chain X, Crystal Structure Of Thioredoxin Reductase From Drosophila Melanogaster Length = 488

Iteration: 1
 Score =  152 bits (384), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 119/388 (30%), Positives = 196/388 (50%), Gaps = 44/388 (11%)
Query: 156 NWNAATKLIKRFCIRAKNDSMR-ELKALGIDIVRTAAAFTNPHTI----KLSNRSVTGFN 210
           +W+   + ++   I++ N   R +L+   ++ +    +F + HT+    K   R++T   
Sbjct: 95  DWHKLVQSVQNH-IKSVNWVTRVDLRDKKVEYINGLGSFVDSHTLLAKLKSGERTITAQT 153
Query: 211 FLLAVERRCLPEPRNSAL-------ISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFL 263
           F++AV  R    PR   +       I++DDLF L   PGKTLV+G   + +E A  L  L
Sbjct: 154 FVIAVGGR----PRYPDIPGAVEYGITSDDLFSLDREPGKTLVVGAGYIGLECAGFLKGL 209
Query: 264 GVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVS-IQCCVIEKVISSFDGMKGVRGFHPE 322
           G   T++    +L+ FDQ+M  ++ +S+ + G+  ++  V   V    DG   V+  + E
Sbjct: 210 GYEPTVMVRSIVLRGFDQQMAELVAASMEERGIPFLRKTVPLSVEKQDDGKLLVKYKNVE 269
Query: 323 SKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIV 382
           + E   DV+ TV+ A+ +K     LNL + GV ++K    V + ++ T+V NI+AVG I+
Sbjct: 270 TGEESEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQKDKIPV-DSQEATNVANIYAVGDII 328
Query: 383 HGKPNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGA 442
           +GKP    +A ++ RL+  RLYG   Q MDY  +   V   +E+  VG+SEE A K +GA
Sbjct: 329 YGKPELTPVAVLAGRLLARRLYGGSTQRMDYKDVATTVFTPLEYACVGLSEEDAVKQFGA 388
Query: 443 DGLVIYKSSY-PTFDNLLDPLLPENFVKLVCLKG-GERVLGIHVIGQNNFVKLVCLKGGE 500
           D + ++   Y PT     +  +P+  V+   LK   ER                   G +
Sbjct: 389 DEIEVFHGYYKPT-----EFFIPQKSVRYCYLKAVAER------------------HGDQ 425
Query: 501 RVLGIHVIGQNVAGMIFGYSLALRKFLT 528
           RV G+H IG     +I G++ AL+  LT
Sbjct: 426 RVYGLHYIGPVAGEVIQGFAAALKSGLT 453

>pdb|3DH9|A Chain A, Crystal Structure Of Drosophila Thioredoxin Reductase, Wild-Type Length = 482

Iteration: 1
 Score =  152 bits (384), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 119/388 (30%), Positives = 196/388 (50%), Gaps = 44/388 (11%)
Query: 156 NWNAATKLIKRFCIRAKNDSMR-ELKALGIDIVRTAAAFTNPHTI----KLSNRSVTGFN 210
           +W+   + ++   I++ N   R +L+   ++ +    +F + HT+    K   R++T   
Sbjct: 91  DWHKLVQSVQNH-IKSVNWVTRVDLRDKKVEYINGLGSFVDSHTLLAKLKSGERTITAQT 149
Query: 211 FLLAVERRCLPEPRNSAL-------ISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFL 263
           F++AV  R    PR   +       I++DDLF L   PGKTLV+G   + +E A  L  L
Sbjct: 150 FVIAVGGR----PRYPDIPGAVEYGITSDDLFSLDREPGKTLVVGAGYIGLECAGFLKGL 205
Query: 264 GVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVS-IQCCVIEKVISSFDGMKGVRGFHPE 322
           G   T++    +L+ FDQ+M  ++ +S+ + G+  ++  V   V    DG   V+  + E
Sbjct: 206 GYEPTVMVRSIVLRGFDQQMAELVAASMEERGIPFLRKTVPLSVEKQDDGKLLVKYKNVE 265
Query: 323 SKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIV 382
           + E   DV+ TV+ A+ +K     LNL + GV ++K    V + ++ T+V NI+AVG I+
Sbjct: 266 TGEESEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQKDKIPV-DSQEATNVANIYAVGDII 324
Query: 383 HGKPNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGA 442
           +GKP    +A ++ RL+  RLYG   Q MDY  +   V   +E+  VG+SEE A K +GA
Sbjct: 325 YGKPELTPVAVLAGRLLARRLYGGSTQRMDYKDVATTVFTPLEYACVGLSEEDAVKQFGA 384
Query: 443 DGLVIYKSSY-PTFDNLLDPLLPENFVKLVCLKG-GERVLGIHVIGQNNFVKLVCLKGGE 500
           D + ++   Y PT     +  +P+  V+   LK   ER                   G +
Sbjct: 385 DEIEVFHGYYKPT-----EFFIPQKSVRYCYLKAVAER------------------HGDQ 421
Query: 501 RVLGIHVIGQNVAGMIFGYSLALRKFLT 528
           RV G+H IG     +I G++ AL+  LT
Sbjct: 422 RVYGLHYIGPVAGEVIQGFAAALKSGLT 449

>pdb|3DGH|A Chain A, Crystal Structure Of Drosophila Thioredoxin Reductase, C-Terminal 8- Residue Truncation Length = 483

Iteration: 1
 Score =  152 bits (383), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 119/388 (30%), Positives = 196/388 (50%), Gaps = 44/388 (11%)
Query: 156 NWNAATKLIKRFCIRAKNDSMR-ELKALGIDIVRTAAAFTNPHTI----KLSNRSVTGFN 210
           +W+   + ++   I++ N   R +L+   ++ +    +F + HT+    K   R++T   
Sbjct: 95  DWHKLVQSVQNH-IKSVNWVTRVDLRDKKVEYINGLGSFVDSHTLLAKLKSGERTITAQT 153
Query: 211 FLLAVERRCLPEPRNSAL-------ISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFL 263
           F++AV  R    PR   +       I++DDLF L   PGKTLV+G   + +E A  L  L
Sbjct: 154 FVIAVGGR----PRYPDIPGAVEYGITSDDLFSLDREPGKTLVVGAGYIGLECAGFLKGL 209
Query: 264 GVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVS-IQCCVIEKVISSFDGMKGVRGFHPE 322
           G   T++    +L+ FDQ+M  ++ +S+ + G+  ++  V   V    DG   V+  + E
Sbjct: 210 GYEPTVMVRSIVLRGFDQQMAELVAASMEERGIPFLRKTVPLSVEKQDDGKLLVKYKNVE 269
Query: 323 SKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIV 382
           + E   DV+ TV+ A+ +K     LNL + GV ++K    V + ++ T+V NI+AVG I+
Sbjct: 270 TGEESEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQKDKIPV-DSQEATNVANIYAVGDII 328
Query: 383 HGKPNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGA 442
           +GKP    +A ++ RL+  RLYG   Q MDY  +   V   +E+  VG+SEE A K +GA
Sbjct: 329 YGKPELTPVAVLAGRLLARRLYGGSTQRMDYKDVATTVFTPLEYACVGLSEEDAVKQFGA 388
Query: 443 DGLVIYKSSY-PTFDNLLDPLLPENFVKLVCLKG-GERVLGIHVIGQNNFVKLVCLKGGE 500
           D + ++   Y PT     +  +P+  V+   LK   ER                   G +
Sbjct: 389 DEIEVFHGYYKPT-----EFFIPQKSVRYCYLKAVAER------------------HGDQ 425
Query: 501 RVLGIHVIGQNVAGMIFGYSLALRKFLT 528
           RV G+H IG     +I G++ AL+  LT
Sbjct: 426 RVYGLHYIGPVAGEVIQGFAAALKSGLT 453

>pdb|3H4K|A Chain A, Crystal Structure Of The Wild Type Thioredoxin Glutatione Reductase From Schistosoma Mansoni In Complex With Auranofin Length = 598

Iteration: 1
 Score =  151 bits (381), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 114/367 (31%), Positives = 187/367 (50%), Gaps = 57/367 (15%)
Query: 195 NPHTIKLSNR-----SVTGFNFLLAV-ERRCLPEPRNSAL--ISADDLFRLGAWPGKTLV 246
           +PH ++++++     ++TG   +LA  ER   PE   +    I++DDLF L  +PGKTLV
Sbjct: 232 SPHEVQITDKNQKVSTITGNKIILATGERPKYPEIPGAVEYGITSDDLFSLPYFPGKTLV 291
Query: 247 LGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIE- 304
           +G S +A+E A  L  LG  VT++    LL+ FDQ+M   +   +   GV   + CV + 
Sbjct: 292 IGASYVALECAGFLASLGGDVTVMVRSILLRGFDQQMAEKVGDYMENHGVKFAKLCVPDE 351
Query: 305 ----KVISSFDGMKG---VRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIK 357
               KV+ + +   G   V+G + + K+ F + F+TV+ A+ ++   + +    +GV + 
Sbjct: 352 IKQLKVVDTENNKPGLLLVKGHYTDGKK-FEEEFETVIFAVGREPQLSKVLCETVGVKLD 410
Query: 358 KKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQDQLMDYSFLP 417
           K   VVC + +QT+V N++A+G I  GKP    +A  + R +  RL+    +L DYS + 
Sbjct: 411 KNGRVVCTDDEQTTVSNVYAIGDINAGKPQLTPVAIQAGRYLARRLFAGATELTDYSNVA 470
Query: 418 VVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTF--------DNLLDPLLPENFVK 469
             V   +E+G  G+SEE A + YG   + +Y S++           DN+        ++K
Sbjct: 471 TTVFTPLEYGACGLSEEDAIEKYGDKDIEVYHSNFKPLEWTVAHREDNVC-------YMK 523
Query: 470 LVCLKGGE-RVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLT 528
           LVC K    RVLG+HV+G N          GE              +  GY++A++   T
Sbjct: 524 LVCRKSDNMRVLGLHVLGPN---------AGE--------------ITQGYAVAIKMGAT 560
Query: 529 KAELDGT 535
           KA+ D T
Sbjct: 561 KADFDRT 567

>pdb|2X8C|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni With The Reduced C-Terminal End Length = 598

Iteration: 1
 Score =  151 bits (381), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 114/367 (31%), Positives = 187/367 (50%), Gaps = 57/367 (15%)
Query: 195 NPHTIKLSNR-----SVTGFNFLLAV-ERRCLPEPRNSAL--ISADDLFRLGAWPGKTLV 246
           +PH ++++++     ++TG   +LA  ER   PE   +    I++DDLF L  +PGKTLV
Sbjct: 232 SPHEVQITDKNQKVSTITGNKIILATGERPKYPEIPGAVEYGITSDDLFSLPYFPGKTLV 291
Query: 247 LGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIE- 304
           +G S +A+E A  L  LG  VT++    LL+ FDQ+M   +   +   GV   + CV + 
Sbjct: 292 IGASYVALECAGFLASLGGDVTVMVRSILLRGFDQQMAEKVGDYMENHGVKFAKLCVPDE 351
Query: 305 ----KVISSFDGMKG---VRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIK 357
               KV+ + +   G   V+G + + K+ F + F+TV+ A+ ++   + +    +GV + 
Sbjct: 352 IKQLKVVDTENNKPGLLLVKGHYTDGKK-FEEEFETVIFAVGREPQLSKVLCETVGVKLD 410
Query: 358 KKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQDQLMDYSFLP 417
           K   VVC + +QT+V N++A+G I  GKP    +A  + R +  RL+    +L DYS + 
Sbjct: 411 KNGRVVCTDDEQTTVSNVYAIGDINAGKPQLTPVAIQAGRYLARRLFAGATELTDYSNVA 470
Query: 418 VVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTF--------DNLLDPLLPENFVK 469
             V   +E+G  G+SEE A + YG   + +Y S++           DN+        ++K
Sbjct: 471 TTVFTPLEYGACGLSEEDAIEKYGDKDIEVYHSNFKPLEWTVAHREDNVC-------YMK 523
Query: 470 LVCLKGGE-RVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLT 528
           LVC K    RVLG+HV+G N          GE              +  GY++A++   T
Sbjct: 524 LVCRKSDNMRVLGLHVLGPN---------AGE--------------ITQGYAVAIKMGAT 560
Query: 529 KAELDGT 535
           KA+ D T
Sbjct: 561 KADFDRT 567

>pdb|2V6O|A Chain A, Structure Of Schistosoma Mansoni Thioredoxin-Glutathione Reductase (Smtgr) Length = 596

Iteration: 1
 Score =  151 bits (381), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 114/367 (31%), Positives = 187/367 (50%), Gaps = 57/367 (15%)
Query: 195 NPHTIKLSNR-----SVTGFNFLLAV-ERRCLPEPRNSAL--ISADDLFRLGAWPGKTLV 246
           +PH ++++++     ++TG   +LA  ER   PE   +    I++DDLF L  +PGKTLV
Sbjct: 232 SPHEVQITDKNQKVSTITGNKIILATGERPKYPEIPGAVEYGITSDDLFSLPYFPGKTLV 291
Query: 247 LGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIE- 304
           +G S +A+E A  L  LG  VT++    LL+ FDQ+M   +   +   GV   + CV + 
Sbjct: 292 IGASYVALECAGFLASLGGDVTVMVRSILLRGFDQQMAEKVGDYMENHGVKFAKLCVPDE 351
Query: 305 ----KVISSFDGMKG---VRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIK 357
               KV+ + +   G   V+G + + K+ F + F+TV+ A+ ++   + +    +GV + 
Sbjct: 352 IKQLKVVDTENNKPGLLLVKGHYTDGKK-FEEEFETVIFAVGREPQLSKVLCETVGVKLD 410
Query: 358 KKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQDQLMDYSFLP 417
           K   VVC + +QT+V N++A+G I  GKP    +A  + R +  RL+    +L DYS + 
Sbjct: 411 KNGRVVCTDDEQTTVSNVYAIGDINAGKPQLTPVAIQAGRYLARRLFAGATELTDYSNVA 470
Query: 418 VVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTF--------DNLLDPLLPENFVK 469
             V   +E+G  G+SEE A + YG   + +Y S++           DN+        ++K
Sbjct: 471 TTVFTPLEYGACGLSEEDAIEKYGDKDIEVYHSNFKPLEWTVAHREDNVC-------YMK 523
Query: 470 LVCLKGGE-RVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLT 528
           LVC K    RVLG+HV+G N          GE              +  GY++A++   T
Sbjct: 524 LVCRKSDNMRVLGLHVLGPN---------AGE--------------ITQGYAVAIKMGAT 560
Query: 529 KAELDGT 535
           KA+ D T
Sbjct: 561 KADFDRT 567

>pdb|3EAN|A Chain A, Crystal Structure Of Recombinant Rat Selenoprotein Thioredoxin Reductase 1 With Reduced C-Terminal Tail Length = 499

Iteration: 1
 Score =  138 bits (347), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 114/368 (30%), Positives = 178/368 (48%), Gaps = 58/368 (15%)
Query: 193 FTNPHTIKLSN-----RSVTGFNFLLAVERRCLPEPR-------NSALISADDLFRLGAW 240
           F  PH I  +N     +  +   FL+A   R    PR           IS+DDLF L   
Sbjct: 134 FIGPHKIMATNNKGKEKVYSAERFLIATGER----PRYLGIPGDKEYCISSDDLFSLPYC 189
Query: 241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVS-IQ 299
           PGKTLV+G S +A+E A  L  +G+ VT++    LL+ FDQ+M   +   + + G+  I+
Sbjct: 190 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIR 249
Query: 300 CCV---IEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDI 356
             V   IE++ +   G   V      S+E   D F TV+ A+ +      + L  +GV I
Sbjct: 250 QFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVGRDSCTRTIGLETVGVKI 309
Query: 357 KKKS-YVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQDQLMDYSF 415
            +K+  +   +++QT+V  I+A+G I+ GK     +A  + RL+ +RLYG      DY  
Sbjct: 310 NEKTGKIPVTDEEQTNVPYIYAIGDILEGKLELTPVAIQAGRLLAQRLYGGSTVKCDYDN 369
Query: 416 LPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKS-------SYPTFDNLLDPLLPENFV 468
           +P  V   +E+G  G+SEE A + +G + + +Y S       + P+ DN       + + 
Sbjct: 370 VPTTVFTPLEYGCCGLSEEKAVEKFGEENIEVYHSFFWPLEWTVPSRDN------NKCYA 423
Query: 469 KLVC-LKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFL 527
           K++C LK  ERV+G HV+G N          GE              +  G++ AL+  L
Sbjct: 424 KVICNLKDNERVVGFHVLGPN---------AGE--------------VTQGFAAALKCGL 460
Query: 528 TKAELDGT 535
           TK +LD T
Sbjct: 461 TKQQLDST 468

>pdb|1H6V|A Chain A, Mammalian Thioredoxin Reductase Length = 499

Iteration: 1
 Score =  138 bits (347), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 114/368 (30%), Positives = 178/368 (48%), Gaps = 58/368 (15%)
Query: 193 FTNPHTIKLSN-----RSVTGFNFLLAVERRCLPEPR-------NSALISADDLFRLGAW 240
           F  PH I  +N     +  +   FL+A   R    PR           IS+DDLF L   
Sbjct: 134 FIGPHKIMATNNKGKEKVYSAERFLIATGER----PRYLGIPGDKEYCISSDDLFSLPYC 189
Query: 241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVS-IQ 299
           PGKTLV+G S +A+E A  L  +G+ VT++    LL+ FDQ+M   +   + + G+  I+
Sbjct: 190 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIR 249
Query: 300 CCV---IEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDI 356
             V   IE++ +   G   V      S+E   D F TV+ A+ +      + L  +GV I
Sbjct: 250 QFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVGRDSCTRTIGLETVGVKI 309
Query: 357 KKKS-YVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQDQLMDYSF 415
            +K+  +   +++QT+V  I+A+G I+ GK     +A  + RL+ +RLYG      DY  
Sbjct: 310 NEKTGKIPVTDEEQTNVPYIYAIGDILEGKLELTPVAIQAGRLLAQRLYGGSTVKCDYDN 369
Query: 416 LPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKS-------SYPTFDNLLDPLLPENFV 468
           +P  V   +E+G  G+SEE A + +G + + +Y S       + P+ DN       + + 
Sbjct: 370 VPTTVFTPLEYGCCGLSEEKAVEKFGEENIEVYHSFFWPLEWTVPSRDN------NKCYA 423
Query: 469 KLVC-LKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFL 527
           K++C LK  ERV+G HV+G N          GE              +  G++ AL+  L
Sbjct: 424 KVICNLKDNERVVGFHVLGPN---------AGE--------------VTQGFAAALKCGL 460
Query: 528 TKAELDGT 535
           TK +LD T
Sbjct: 461 TKQQLDST 468

>pdb|4B1B|A Chain A, Crystal Structure Of Plasmodium Falciparum Oxidised Thioredoxin Reductase At 2.9 Angstrom Length = 542

Iteration: 1
 Score =  133 bits (334), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 99/336 (29%), Positives = 172/336 (51%), Gaps = 19/336 (5%)
Query: 204 RSVTGFNFLLAVE-RRCLPEPRNSAL---ISADDLFRLGAWPGKTLVLGGSLMAVEIAAT 259
            +VTG   L+A   R  +P+    A    I++DD+F L   PGKTLV+G S +A+E +  
Sbjct: 182 ETVTGKYILIATGCRPHIPDDVEGAKELSITSDDIFSLKKDPGKTLVVGASYVALECSGF 241
Query: 260 LNFLGVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVSIQCCVIEKVISSFDGMKGVRGF 319
           LN LG  VT+     +L+ FDQ+    +   + + GV  +  ++ K ++  D    V   
Sbjct: 242 LNSLGYDVTVAVRSIVLRGFDQQCAVKVKLYMEEQGVMFKNGILPKKLTKMDDKILV--- 298
Query: 320 HPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKK-KSYVVCNEKDQTSVGNIFAV 378
             E  +  ++++ TV+ A+ +K D   LNL  + +++ K  + ++ +    T++ +IFAV
Sbjct: 299 --EFSDKTSELYDTVLYAIGRKGDIDGLNLESLNMNVNKSNNKIIADHLSCTNIPSIFAV 356
Query: 379 GGIVHGKPNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAK 438
           G +    P  A +A  +  ++  RL+   D++MDYS++P  +   +E+G  G SEE A +
Sbjct: 357 GDVAENVPELAPVAIKAGEILARRLFKDSDEIMDYSYIPTSIYTPIEYGACGYSEEKAYE 416
Query: 439 VYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKG 498
           +YG   + ++      F+NL   +   +  K +  +  E  L +         KLVCLK 
Sbjct: 417 LYGKSNVEVF---LQEFNNL--EISAVHRQKHIRAQKDEYDLDV---SSTCLAKLVCLKN 468
Query: 499 GE-RVLGIHVIGQNVAGMIFGYSLALRKFLTKAELD 533
            + RV+G H +G N   +  G +LALR  + K + D
Sbjct: 469 EDNRVIGFHYVGPNAGEVTQGMALALRLKVKKKDFD 504

>pdb|1ZDL|A Chain A, Crystal Structure Of Mouse Thioredoxin Reductase Type 2 Length = 517

Iteration: 1
 Score =  132 bits (333), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 99/353 (28%), Positives = 180/353 (50%), Gaps = 25/353 (7%)
Query: 155 RNWNAATKLIKRFCIRAKNDSMR-ELKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLL 213
            NW    + ++   +++ N   R +L+   +      A+F + HT++  ++   G   LL
Sbjct: 116 HNWKTMAEAVQNH-VKSLNWGHRVQLQDRKVKYFNIKASFVDEHTVRGVDKG--GKATLL 172
Query: 214 AVE--------RRCLPEPRNSAL---ISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNF 262
           + E        R   P     AL   I++DD+F L   PGKTLV+G S +A+E A  L  
Sbjct: 173 SAEHIVIATGGRPRYPTQVKGALEYGITSDDIFWLKESPGKTLVVGASYVALECAGFLTG 232
Query: 263 LGVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVS-IQCCV---IEKVISSFDGMKGVRG 318
           +G+  T++     L+ FDQ+M  ++   +   G   ++ CV   I+K+ +  + ++    
Sbjct: 233 IGLDTTVMMRSIPLRGFDQQMSSLVTEHMESHGTQFLKGCVPSHIKKLPT--NQLQVTWE 290
Query: 319 FHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSY-VVCNEKDQTSVGNIFA 377
            H   KE     F TV+ A+ +  +   LNL   G+    K+  ++ + ++ TSV +I+A
Sbjct: 291 DHASGKED-TGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQKIIVDAQEATSVPHIYA 349
Query: 378 VGGIVHGKPNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAA 437
           +G +  G+P     A  + +L+ +RL+G    LMDYS +P  V   +E+G VG+SEE A 
Sbjct: 350 IGDVAEGRPELTPTAIKAGKLLAQRLFGKSSTLMDYSNVPTTVFTPLEYGCVGLSEEEAV 409
Query: 438 KVYGADGLVIYKSSYPTFD-NLLDPLLPENFVKLVCLKGGER-VLGIHVIGQN 488
            ++G + + +Y + Y   +  + D    + ++K+VC++   + VLG+H +G N
Sbjct: 410 ALHGQEHVEVYHAYYKPLEFTVADRDASQCYIKMVCMREPPQLVLGLHFLGPN 462

>pdb|3DGZ|A Chain A, Crystal Structure Of Mouse Mitochondrial Thioredoxin Reductase, C- Terminal 3-Residue Truncation Length = 488

Iteration: 1
 Score =  132 bits (333), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 99/353 (28%), Positives = 180/353 (50%), Gaps = 25/353 (7%)
Query: 155 RNWNAATKLIKRFCIRAKNDSMR-ELKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLL 213
            NW    + ++   +++ N   R +L+   +      A+F + HT++  ++   G   LL
Sbjct: 90  HNWKTMAEAVQNH-VKSLNWGHRVQLQDRKVKYFNIKASFVDEHTVRGVDKG--GKATLL 146
Query: 214 AVE--------RRCLPEPRNSAL---ISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNF 262
           + E        R   P     AL   I++DD+F L   PGKTLV+G S +A+E A  L  
Sbjct: 147 SAEHIVIATGGRPRYPTQVKGALEYGITSDDIFWLKESPGKTLVVGASYVALECAGFLTG 206
Query: 263 LGVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVS-IQCCV---IEKVISSFDGMKGVRG 318
           +G+  T++     L+ FDQ+M  ++   +   G   ++ CV   I+K+ +  + ++    
Sbjct: 207 IGLDTTVMMRSIPLRGFDQQMSSLVTEHMESHGTQFLKGCVPSHIKKLPT--NQLQVTWE 264
Query: 319 FHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSY-VVCNEKDQTSVGNIFA 377
            H   KE     F TV+ A+ +  +   LNL   G+    K+  ++ + ++ TSV +I+A
Sbjct: 265 DHASGKED-TGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQKIIVDAQEATSVPHIYA 323
Query: 378 VGGIVHGKPNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAA 437
           +G +  G+P     A  + +L+ +RL+G    LMDYS +P  V   +E+G VG+SEE A 
Sbjct: 324 IGDVAEGRPELTPTAIKAGKLLAQRLFGKSSTLMDYSNVPTTVFTPLEYGCVGLSEEEAV 383
Query: 438 KVYGADGLVIYKSSYPTFD-NLLDPLLPENFVKLVCLKGGER-VLGIHVIGQN 488
            ++G + + +Y + Y   +  + D    + ++K+VC++   + VLG+H +G N
Sbjct: 384 ALHGQEHVEVYHAYYKPLEFTVADRDASQCYIKMVCMREPPQLVLGLHFLGPN 436

>pdb|2ZZ0|A Chain A, Crystal Structure Of Human Thioredoxin Reductase I (Secys 498 Cys) Length = 513

Iteration: 1
 Score =  127 bits (319), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 109/368 (29%), Positives = 175/368 (47%), Gaps = 58/368 (15%)
Query: 193 FTNPHTIKLSN-----RSVTGFNFLLAVERRCLPEPR-------NSALISADDLFRLGAW 240
           F  PH IK +N     +  +   FL+A   R    PR           IS+DDLF L   
Sbjct: 148 FIGPHRIKATNNKGKEKIYSAERFLIATGER----PRYLGIPGDKEYCISSDDLFSLPYC 203
Query: 241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVS-IQ 299
           PGKTLV+G S +A+E A  L  +G+ VT++    LL+ FDQ+M   +   + + G+  I+
Sbjct: 204 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIR 263
Query: 300 CCV---IEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDI 356
             V   +E++ +   G   V      S+E     + TV+ A+ +      + L  +GV I
Sbjct: 264 QFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKI 323
Query: 357 KKKS-YVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQDQLMDYSF 415
            +K+  +   +++QT+V  I+A+G I+  K     +A  + RL+ +RLY       DY  
Sbjct: 324 NEKTGKIPVTDEEQTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAGSTVKCDYEN 383
Query: 416 LPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSY-------PTFDNLLDPLLPENFV 468
           +P  V   +E+G  G+SEE A + +G + + +Y S +       P+ DN       + + 
Sbjct: 384 VPTTVFTPLEYGACGLSEEKAVEKFGEENIEVYHSYFWPLEWTIPSRDN------NKCYA 437
Query: 469 KLVC-LKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFL 527
           K++C  K  ERV+G HV+G N          GE              +  G++ AL+  L
Sbjct: 438 KIICNTKDNERVVGFHVLGPN---------AGE--------------VTQGFAAALKCGL 474
Query: 528 TKAELDGT 535
           TK +LD T
Sbjct: 475 TKKQLDST 482

>pdb|2CFY|A Chain A, Crystal Structure Of Human Thioredoxin Reductase 1 Length = 521

Iteration: 1
 Score =  127 bits (319), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 111/364 (30%), Positives = 178/364 (48%), Gaps = 50/364 (13%)
Query: 193 FTNPHTIKLSN-----RSVTGFNFLLAV-ER-RCLPEPRNSA-LISADDLFRLGAWPGKT 244
           F  PH IK +N     +  +   FL+A  ER R L  P +    IS+DDLF L   PGKT
Sbjct: 156 FIGPHRIKATNNKGKEKIYSAERFLIATGERPRYLGIPGDKEYCISSDDLFSLPYCPGKT 215
Query: 245 LVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVS-IQCCV- 302
           LV+G S +A+E A  L  +G+ VT++    LL+ FDQ+M   +   + + G+  I+  V 
Sbjct: 216 LVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQFVP 275
Query: 303 --IEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKS 360
             +E++ +   G   V      S+E     + TV+ A+ +      + L  +GV I +K+
Sbjct: 276 IKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKT 335
Query: 361 -YVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQDQLMDYSFLPVV 419
             +   +++QT+V  I+A+G I+  K     +A  + RL+ +RLY       DY  +P  
Sbjct: 336 GKIPVTDEEQTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAGSTVKCDYENVPTT 395
Query: 420 VRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSY-------PTFDNLLDPLLPENFVKLVC 472
           V   +E+G  G+SEE A + +G + + +Y S +       P+ DN       + + K++C
Sbjct: 396 VFTPLEYGACGLSEEKAVEKFGEENIEVYHSYFWPLEWTIPSRDN------NKCYAKIIC 449
Query: 473 -LKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAE 531
             K  ERV+G HV+G N          GE              +  G++ AL+  LTK +
Sbjct: 450 NTKDNERVVGFHVLGPN---------AGE--------------VTQGFAAALKCGLTKKQ 486
Query: 532 LDGT 535
           LD T
Sbjct: 487 LDST 490

>pdb|3QFA|A Chain A, Crystal Structure Of The Human Thioredoxin Reductase-Thioredoxin Complex Length = 519

Iteration: 1
 Score =  127 bits (318), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 109/368 (29%), Positives = 175/368 (47%), Gaps = 58/368 (15%)
Query: 193 FTNPHTIKLSN-----RSVTGFNFLLAVERRCLPEPR-------NSALISADDLFRLGAW 240
           F  PH IK +N     +  +   FL+A   R    PR           IS+DDLF L   
Sbjct: 154 FIGPHRIKATNNKGKEKIYSAERFLIATGER----PRYLGIPGDKEYCISSDDLFSLPYC 209
Query: 241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVS-IQ 299
           PGKTLV+G S +A+E A  L  +G+ VT++    LL+ FDQ+M   +   + + G+  I+
Sbjct: 210 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIR 269
Query: 300 CCV---IEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDI 356
             V   +E++ +   G   V      S+E     + TV+ A+ +      + L  +GV I
Sbjct: 270 QFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKI 329
Query: 357 KKKS-YVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQDQLMDYSF 415
            +K+  +   +++QT+V  I+A+G I+  K     +A  + RL+ +RLY       DY  
Sbjct: 330 NEKTGKIPVTDEEQTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAGSTVKCDYEN 389
Query: 416 LPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSY-------PTFDNLLDPLLPENFV 468
           +P  V   +E+G  G+SEE A + +G + + +Y S +       P+ DN       + + 
Sbjct: 390 VPTTVFTPLEYGACGLSEEKAVEKFGEENIEVYHSYFWPLEWTIPSRDN------NKCYA 443
Query: 469 KLVC-LKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFL 527
           K++C  K  ERV+G HV+G N          GE              +  G++ AL+  L
Sbjct: 444 KIICNTKDNERVVGFHVLGPN---------AGE--------------VTQGFAAALKCGL 480
Query: 528 TKAELDGT 535
           TK +LD T
Sbjct: 481 TKKQLDST 488

>pdb|2J3N|A Chain A, X-Ray Structure Of Human Thioredoxin Reductase 1 Length = 519

Iteration: 1
 Score =  127 bits (318), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 109/368 (29%), Positives = 175/368 (47%), Gaps = 58/368 (15%)
Query: 193 FTNPHTIKLSN-----RSVTGFNFLLAVERRCLPEPR-------NSALISADDLFRLGAW 240
           F  PH IK +N     +  +   FL+A   R    PR           IS+DDLF L   
Sbjct: 154 FIGPHRIKATNNKGKEKIYSAERFLIATGER----PRYLGIPGDKEYCISSDDLFSLPYC 209
Query: 241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVS-IQ 299
           PGKTLV+G S +A+E A  L  +G+ VT++    LL+ FDQ+M   +   + + G+  I+
Sbjct: 210 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIR 269
Query: 300 CCV---IEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDI 356
             V   +E++ +   G   V      S+E     + TV+ A+ +      + L  +GV I
Sbjct: 270 QFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKI 329
Query: 357 KKKS-YVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQDQLMDYSF 415
            +K+  +   +++QT+V  I+A+G I+  K     +A  + RL+ +RLY       DY  
Sbjct: 330 NEKTGKIPVTDEEQTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAGSTVKCDYEN 389
Query: 416 LPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSY-------PTFDNLLDPLLPENFV 468
           +P  V   +E+G  G+SEE A + +G + + +Y S +       P+ DN       + + 
Sbjct: 390 VPTTVFTPLEYGACGLSEEKAVEKFGEENIEVYHSYFWPLEWTIPSRDN------NKCYA 443
Query: 469 KLVC-LKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFL 527
           K++C  K  ERV+G HV+G N          GE              +  G++ AL+  L
Sbjct: 444 KIICNTKDNERVVGFHVLGPN---------AGE--------------VTQGFAAALKCGL 480
Query: 528 TKAELDGT 535
           TK +LD T
Sbjct: 481 TKKQLDST 488

>pdb|1GER|A Chain A, The Structure Of Glutathione Reductase From Escherichia Coli At 1.86 Angstroms Resolution: Comparison With The Enzyme From Human Erythrocytes Length = 450

Iteration: 1
 Score =  115 bits (289), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 105/397 (26%), Positives = 181/397 (45%), Gaps = 42/397 (10%)
Query: 149 ALNVTIRNWNAATKLIKR--FCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSNRSV 206
             + TI  +N  T +  R  +  R        L    +D+++  A F +  T++++  ++
Sbjct: 71  GFDTTINKFNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDAKTLEVNGETI 130
Query: 207 TGFNFLLAVE-RRCLPE-PRNSALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLG 264
           T  + L+A   R   P+ P     I +D  F L A P +  V+G   +AVE+A  +N LG
Sbjct: 131 TADHILIATGGRPSHPDIPGVEYGIDSDGFFALPALPERVAVVGAGYIAVELAGVINGLG 190
Query: 265 VPVTL-VYSRRLLKHFDQEMVRILLSSLTKAGVSIQCCVIEK-VISSFDGMKGVRGFHPE 322
               L V     L+ FD  +   L+  +   G  +    I K V+ + DG   +     E
Sbjct: 191 AKTHLFVRKHAPLRSFDPMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTL-----E 245
Query: 323 SKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVG--- 379
            ++  ++    ++ A+ ++     +NL   GV   +K Y+V ++   T++  I+AVG   
Sbjct: 246 LEDGRSETVDCLIWAIGREPANDNINLEAAGVKTNEKGYIVVDKYQNTNIEGIYAVGDNT 305
Query: 380 GIVHGKPNNASMAAISARLIIERLYGMQ-DQLMDYSFLPVVVRGDVEFGTVGMSEEAAAK 438
           G V   P    +A  + R + ERL+  + D+ +DYS +P VV      GTVG++E  A +
Sbjct: 306 GAVELTP----VAVAAGRRLSERLFNNKPDEHLDYSNIPTVVFSHPPIGTVGLTEPQARE 361
Query: 439 VYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKG 498
            YG D + +YKSS+      +        +KLVC+   E+++GIH IG            
Sbjct: 362 QYGDDQVKVYKSSFTAMYTAVTTHRQPCRMKLVCVGSEEKIVGIHGIG------------ 409
Query: 499 GERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT 535
                     G +   M+ G+++AL+   TK + D T
Sbjct: 410 ---------FGMDE--MLQGFAVALKMGATKKDFDNT 435

>pdb|1GRG|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase As Derived From Refined Enzyme: Substrate Crystal Structures At 2 Angstroms Resolution Length = 478

Iteration: 1
 Score =  110 bits (274), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 104/398 (26%), Positives = 183/398 (45%), Gaps = 47/398 (11%)
Query: 156 NWNAATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFT-NPH-TIKLSNRSVTGFNFLL 213
           NW    +    +  R        L    I+I+R  AAFT +P  TI++S +  T  + L+
Sbjct: 95  NWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSGKKYTAPHILI 154
Query: 214 AVERRCLPE-------PRNSALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVP 266
           A     +P        P  S  I++D  F+L   PG+++++G   +AVE+A  L+ LG  
Sbjct: 155 ATGG--MPSTPHESQIPGASLGITSDGFFQLEELPGRSVIVGAGYIAVEMAGILSALGSK 212
Query: 267 VTL-VYSRRLLKHFDQEMVRILLSSLTKAGVSI----QCCVIEKVISSFD--GMKGVRGF 319
            +L +   ++L+ FD  +       L  AGV +    Q   ++K +S  +   +  V G 
Sbjct: 213 TSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGR 272
Query: 320 HP-ESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAV 378
            P  +  P  D     +  +    D   L+L+ +G+    K +++ +E   T+V  I+AV
Sbjct: 273 LPVMTMIPDVDCLLWAIGRVPNTKD---LSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAV 329
Query: 379 GGIVHGKPNNASMAAISARLIIERLYGM-QDQLMDYSFLPVVVRGDVEFGTVGMSEEAAA 437
           G +  GK     +A  + R +  RL+   +D  +DY+ +P VV      GTVG++E+ A 
Sbjct: 330 GDVC-GKALLTPVAIAAGRKLAHRLFEYKEDSKLDYNNIPTVVFSHPPIGTVGLTEDEAI 388
Query: 438 KVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLK 497
             YG + +  Y +S+    + +     +  +K+VC    E+V+GIH+ G      L C +
Sbjct: 389 HKYGIENVKTYSTSFTPMYHAVTKRKTKCVMKMVCANKEEKVVGIHMQG------LGCDE 442
Query: 498 GGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT 535
                            M+ G+++A++   TKA+ D T
Sbjct: 443 -----------------MLQGFAVAVKMGATKADFDNT 463

>pdb|1DNC|A Chain A, Human Glutathione Reductase Modified By Diglutathione-Dinitroso-Iron Length = 478

Iteration: 1
 Score =  110 bits (274), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 104/398 (26%), Positives = 183/398 (45%), Gaps = 47/398 (11%)
Query: 156 NWNAATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFT-NPH-TIKLSNRSVTGFNFLL 213
           NW    +    +  R        L    I+I+R  AAFT +P  TI++S +  T  + L+
Sbjct: 95  NWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSGKKYTAPHILI 154
Query: 214 AVERRCLPE-------PRNSALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVP 266
           A     +P        P  S  I++D  F+L   PG+++++G   +AVE+A  L+ LG  
Sbjct: 155 ATGG--MPSTPHESQIPGASLGITSDGFFQLEELPGRSVIVGAGYIAVEMAGILSALGSK 212
Query: 267 VTL-VYSRRLLKHFDQEMVRILLSSLTKAGVSI----QCCVIEKVISSFD--GMKGVRGF 319
            +L +   ++L+ FD  +       L  AGV +    Q   ++K +S  +   +  V G 
Sbjct: 213 TSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGR 272
Query: 320 HP-ESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAV 378
            P  +  P  D     +  +    D   L+L+ +G+    K +++ +E   T+V  I+AV
Sbjct: 273 LPVMTMIPDVDCLLWAIGRVPNTKD---LSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAV 329
Query: 379 GGIVHGKPNNASMAAISARLIIERLYGM-QDQLMDYSFLPVVVRGDVEFGTVGMSEEAAA 437
           G +  GK     +A  + R +  RL+   +D  +DY+ +P VV      GTVG++E+ A 
Sbjct: 330 GDVC-GKALLTPVAIAAGRKLAHRLFEYKEDSKLDYNNIPTVVFSHPPIGTVGLTEDEAI 388
Query: 438 KVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLK 497
             YG + +  Y +S+    + +     +  +K+VC    E+V+GIH+ G      L C +
Sbjct: 389 HKYGIENVKTYSTSFTPMYHAVTKRKTKCVMKMVCANKEEKVVGIHMQG------LGCDE 442
Query: 498 GGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT 535
                            M+ G+++A++   TKA+ D T
Sbjct: 443 -----------------MLQGFAVAVKMGATKADFDNT 463

>pdb|3DJG|X Chain X, Catalytic Cycle Of Human Glutathione Reductase Near 1 A Resolution Length = 477

Iteration: 1
 Score =  110 bits (274), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 104/398 (26%), Positives = 183/398 (45%), Gaps = 47/398 (11%)
Query: 156 NWNAATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFT-NPH-TIKLSNRSVTGFNFLL 213
           NW    +    +  R        L    I+I+R  AAFT +P  TI++S +  T  + L+
Sbjct: 94  NWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSGKKYTAPHILI 153
Query: 214 AVERRCLPE-------PRNSALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVP 266
           A     +P        P  S  I++D  F+L   PG+++++G   +AVE+A  L+ LG  
Sbjct: 154 ATGG--MPSTPHESQIPGASLGITSDGFFQLEELPGRSVIVGAGYIAVEMAGILSALGSK 211
Query: 267 VTL-VYSRRLLKHFDQEMVRILLSSLTKAGVSI----QCCVIEKVISSFD--GMKGVRGF 319
            +L +   ++L+ FD  +       L  AGV +    Q   ++K +S  +   +  V G 
Sbjct: 212 TSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGR 271
Query: 320 HP-ESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAV 378
            P  +  P  D     +  +    D   L+L+ +G+    K +++ +E   T+V  I+AV
Sbjct: 272 LPVMTMIPDVDCLLWAIGRVPNTKD---LSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAV 328
Query: 379 GGIVHGKPNNASMAAISARLIIERLYGM-QDQLMDYSFLPVVVRGDVEFGTVGMSEEAAA 437
           G +  GK     +A  + R +  RL+   +D  +DY+ +P VV      GTVG++E+ A 
Sbjct: 329 GDVC-GKALLTPVAIAAGRKLAHRLFEYKEDSKLDYNNIPTVVFSHPPIGTVGLTEDEAI 387
Query: 438 KVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLK 497
             YG + +  Y +S+    + +     +  +K+VC    E+V+GIH+ G      L C +
Sbjct: 388 HKYGIENVKTYSTSFTPMYHAVTKRKTKCVMKMVCANKEEKVVGIHMQG------LGCDE 441
Query: 498 GGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT 535
                            M+ G+++A++   TKA+ D T
Sbjct: 442 -----------------MLQGFAVAVKMGATKADFDNT 462

>pdb|1BWC|A Chain A, Structure Of Human Glutathione Reductase Complexed With Ajoene Inhibitor And Subversive Substrate Length = 478

Iteration: 1
 Score =  110 bits (274), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 104/398 (26%), Positives = 183/398 (45%), Gaps = 47/398 (11%)
Query: 156 NWNAATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFT-NPH-TIKLSNRSVTGFNFLL 213
           NW    +    +  R        L    I+I+R  AAFT +P  TI++S +  T  + L+
Sbjct: 95  NWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSGKKYTAPHILI 154
Query: 214 AVERRCLPE-------PRNSALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVP 266
           A     +P        P  S  I++D  F+L   PG+++++G   +AVE+A  L+ LG  
Sbjct: 155 ATGG--MPSTPHESQIPGASLGITSDGFFQLEELPGRSVIVGAGYIAVEMAGILSALGSK 212
Query: 267 VTL-VYSRRLLKHFDQEMVRILLSSLTKAGVSI----QCCVIEKVISSFD--GMKGVRGF 319
            +L +   ++L+ FD  +       L  AGV +    Q   ++K +S  +   +  V G 
Sbjct: 213 TSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGR 272
Query: 320 HP-ESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAV 378
            P  +  P  D     +  +    D   L+L+ +G+    K +++ +E   T+V  I+AV
Sbjct: 273 LPVMTMIPDVDCLLWAIGRVPNTKD---LSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAV 329
Query: 379 GGIVHGKPNNASMAAISARLIIERLYGM-QDQLMDYSFLPVVVRGDVEFGTVGMSEEAAA 437
           G +  GK     +A  + R +  RL+   +D  +DY+ +P VV      GTVG++E+ A 
Sbjct: 330 GDVC-GKALLTPVAIAAGRKLAHRLFEYKEDSKLDYNNIPTVVFSHPPIGTVGLTEDEAI 388
Query: 438 KVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLK 497
             YG + +  Y +S+    + +     +  +K+VC    E+V+GIH+ G      L C +
Sbjct: 389 HKYGIENVKTYSTSFTPMYHAVTKRKTKCVMKMVCANKEEKVVGIHMQG------LGCDE 442
Query: 498 GGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT 535
                            M+ G+++A++   TKA+ D T
Sbjct: 443 -----------------MLQGFAVAVKMGATKADFDNT 463

>pdb|2AAQ|A Chain A, Crystal Structure Analysis Of The Human Glutahione Reductase, Complexed With Gopi Length = 479

Iteration: 1
 Score =  110 bits (274), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 104/398 (26%), Positives = 183/398 (45%), Gaps = 47/398 (11%)
Query: 156 NWNAATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFT-NPH-TIKLSNRSVTGFNFLL 213
           NW    +    +  R        L    I+I+R  AAFT +P  TI++S +  T  + L+
Sbjct: 96  NWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSGKKYTAPHILI 155
Query: 214 AVERRCLPE-------PRNSALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVP 266
           A     +P        P  S  I++D  F+L   PG+++++G   +AVE+A  L+ LG  
Sbjct: 156 ATGG--MPSTPHESQIPGASLGITSDGFFQLEELPGRSVIVGAGYIAVEMAGILSALGSK 213
Query: 267 VTL-VYSRRLLKHFDQEMVRILLSSLTKAGVSI----QCCVIEKVISSFD--GMKGVRGF 319
            +L +   ++L+ FD  +       L  AGV +    Q   ++K +S  +   +  V G 
Sbjct: 214 TSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGR 273
Query: 320 HP-ESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAV 378
            P  +  P  D     +  +    D   L+L+ +G+    K +++ +E   T+V  I+AV
Sbjct: 274 LPVMTMIPDVDCLLWAIGRVPNTKD---LSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAV 330
Query: 379 GGIVHGKPNNASMAAISARLIIERLYGM-QDQLMDYSFLPVVVRGDVEFGTVGMSEEAAA 437
           G +  GK     +A  + R +  RL+   +D  +DY+ +P VV      GTVG++E+ A 
Sbjct: 331 GDVC-GKALLTPVAIAAGRKLAHRLFEYKEDSKLDYNNIPTVVFSHPPIGTVGLTEDEAI 389
Query: 438 KVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLK 497
             YG + +  Y +S+    + +     +  +K+VC    E+V+GIH+ G      L C +
Sbjct: 390 HKYGIENVKTYSTSFTPMYHAVTKRKTKCVMKMVCANKEEKVVGIHMQG------LGCDE 443
Query: 498 GGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT 535
                            M+ G+++A++   TKA+ D T
Sbjct: 444 -----------------MLQGFAVAVKMGATKADFDNT 464

>pdb|1XAN|A Chain A, Human Glutathione Reductase In Complex With A Xanthene Inhibitor Length = 461

Iteration: 1
 Score =  110 bits (274), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 104/398 (26%), Positives = 183/398 (45%), Gaps = 47/398 (11%)
Query: 156 NWNAATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFT-NPH-TIKLSNRSVTGFNFLL 213
           NW    +    +  R        L    I+I+R  AAFT +P  TI++S +  T  + L+
Sbjct: 78  NWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSGKKYTAPHILI 137
Query: 214 AVERRCLPE-------PRNSALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVP 266
           A     +P        P  S  I++D  F+L   PG+++++G   +AVE+A  L+ LG  
Sbjct: 138 ATGG--MPSTPHESQIPGASLGITSDGFFQLEELPGRSVIVGAGYIAVEMAGILSALGSK 195
Query: 267 VTL-VYSRRLLKHFDQEMVRILLSSLTKAGVSI----QCCVIEKVISSFD--GMKGVRGF 319
            +L +   ++L+ FD  +       L  AGV +    Q   ++K +S  +   +  V G 
Sbjct: 196 TSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGR 255
Query: 320 HP-ESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAV 378
            P  +  P  D     +  +    D   L+L+ +G+    K +++ +E   T+V  I+AV
Sbjct: 256 LPVMTMIPDVDCLLWAIGRVPNTKD---LSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAV 312
Query: 379 GGIVHGKPNNASMAAISARLIIERLYGM-QDQLMDYSFLPVVVRGDVEFGTVGMSEEAAA 437
           G +  GK     +A  + R +  RL+   +D  +DY+ +P VV      GTVG++E+ A 
Sbjct: 313 GDVC-GKALLTPVAIAAGRKLAHRLFEYKEDSKLDYNNIPTVVFSHPPIGTVGLTEDEAI 371
Query: 438 KVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLK 497
             YG + +  Y +S+    + +     +  +K+VC    E+V+GIH+ G      L C +
Sbjct: 372 HKYGIENVKTYSTSFTPMYHAVTKRKTKCVMKMVCANKEEKVVGIHMQG------LGCDE 425
Query: 498 GGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT 535
                            M+ G+++A++   TKA+ D T
Sbjct: 426 -----------------MLQGFAVAVKMGATKADFDNT 446

>pdb|1GRT|A Chain A, Human Glutathione Reductase A34eR37W MUTANT Length = 478

Iteration: 1
 Score =  109 bits (273), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 104/398 (26%), Positives = 183/398 (45%), Gaps = 47/398 (11%)
Query: 156 NWNAATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFT-NPH-TIKLSNRSVTGFNFLL 213
           NW    +    +  R        L    I+I+R  AAFT +P  TI++S +  T  + L+
Sbjct: 95  NWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSGKKYTAPHILI 154
Query: 214 AVERRCLPE-------PRNSALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVP 266
           A     +P        P  S  I++D  F+L   PG+++++G   +AVE+A  L+ LG  
Sbjct: 155 ATGG--MPSTPHESQIPGASLGITSDGFFQLEELPGRSVIVGAGYIAVEMAGILSALGSK 212
Query: 267 VTL-VYSRRLLKHFDQEMVRILLSSLTKAGVSI----QCCVIEKVISSFD--GMKGVRGF 319
            +L +   ++L+ FD  +       L  AGV +    Q   ++K +S  +   +  V G 
Sbjct: 213 TSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGR 272
Query: 320 HP-ESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAV 378
            P  +  P  D     +  +    D   L+L+ +G+    K +++ +E   T+V  I+AV
Sbjct: 273 LPVMTMIPDVDCLLWAIGRVPNTKD---LSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAV 329
Query: 379 GGIVHGKPNNASMAAISARLIIERLYGM-QDQLMDYSFLPVVVRGDVEFGTVGMSEEAAA 437
           G +  GK     +A  + R +  RL+   +D  +DY+ +P VV      GTVG++E+ A 
Sbjct: 330 GDVC-GKALLTPVAIAAGRKLAHRLFEYKEDSKLDYNNIPTVVFSHPPIGTVGLTEDEAI 388
Query: 438 KVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLK 497
             YG + +  Y +S+    + +     +  +K+VC    E+V+GIH+ G      L C +
Sbjct: 389 HKYGIENVKTYSTSFTPMYHAVTKRKTKCVMKMVCANKEEKVVGIHMQG------LGCDE 442
Query: 498 GGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT 535
                            M+ G+++A++   TKA+ D T
Sbjct: 443 -----------------MLQGFAVAVKMGATKADFDNT 463

>pdb|2GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Oxidized Glutathione Complex Length = 461

Iteration: 1
 Score =  109 bits (272), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 104/398 (26%), Positives = 183/398 (45%), Gaps = 47/398 (11%)
Query: 156 NWNAATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFT-NPH-TIKLSNRSVTGFNFLL 213
           NW    +    +  R        L    I+I+R  AAFT +P  TI++S +  T  + L+
Sbjct: 78  NWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSGKKYTAPHILI 137
Query: 214 AVERRCLPE-------PRNSALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVP 266
           A     +P        P  S  I++D  F+L   PG+++++G   +AVE+A  L+ LG  
Sbjct: 138 ATGG--MPSTPHESQIPGASLGITSDGFFQLEELPGRSVIVGAGYIAVEMAGILSALGSK 195
Query: 267 VTL-VYSRRLLKHFDQEMVRILLSSLTKAGVSI----QCCVIEKVISSFD--GMKGVRGF 319
            +L +   ++L+ FD  +       L  AGV +    Q   ++K +S  +   +  V G 
Sbjct: 196 TSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGR 255
Query: 320 HP-ESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAV 378
            P  +  P  D     +  +    D   L+L+ +G+    K +++ +E   T+V  I+AV
Sbjct: 256 LPVMTMIPDVDCLLWAIGRVPNTKD---LSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAV 312
Query: 379 GGIVHGKPNNASMAAISARLIIERLYGM-QDQLMDYSFLPVVVRGDVEFGTVGMSEEAAA 437
           G +  GK     +A  + R +  RL+   +D  +DY+ +P VV      GTVG++E+ A 
Sbjct: 313 GDVC-GKALLTPVAIAAGRKLAHRLFEYKEDSKLDYNNIPTVVFSHPPIGTVGLTEDEAI 371
Query: 438 KVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLK 497
             YG + +  Y +S+    + +     +  +K+VC    E+V+GIH+ G      L C +
Sbjct: 372 HKYGIENVKTYSTSFTPMYHAVTKRKTKCVMKMVCANKEEKVVGIHMQG------LGCDE 425
Query: 498 GGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT 535
                            M+ G+++A++   TKA+ D T
Sbjct: 426 -----------------MLQGFAVAVKMGATKADFDNT 446

>pdb|1GES|A Chain A, Anatomy Of An Engineered Nad-Binding Site Length = 450

Iteration: 1
 Score =  108 bits (271), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 102/397 (25%), Positives = 177/397 (44%), Gaps = 42/397 (10%)
Query: 149 ALNVTIRNWNAATKLIKR--FCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSNRSV 206
             + TI  +N  T +  R  +  R        L    +D+++  A F +  T++++  ++
Sbjct: 71  GFDTTINKFNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDAKTLEVNGETI 130
Query: 207 TGFNFLLAVE-RRCLPE-PRNSALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLG 264
           T  + L+A   R   P+ P     I +D  F L A P +  V+G   + VE+   +N LG
Sbjct: 131 TADHILIATGGRPSHPDIPGVEYGIDSDGFFALPALPERVAVVGAGYIGVELGGVINGLG 190
Query: 265 VPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSIQCCVIEK-VISSFDGMKGVRGFHPE 322
               L       L  FD  +   L+  +   G  +    I K V+ + DG   +     E
Sbjct: 191 AKTHLFEMFDAPLPSFDPMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTL-----E 245
Query: 323 SKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVG--- 379
            ++  ++    ++ A+ ++     +NL   GV   +K Y+V ++   T++  I+AVG   
Sbjct: 246 LEDGRSETVDCLIWAIGREPANDNINLEAAGVKTNEKGYIVVDKYQNTNIEGIYAVGDNT 305
Query: 380 GIVHGKPNNASMAAISARLIIERLYGMQ-DQLMDYSFLPVVVRGDVEFGTVGMSEEAAAK 438
           G V   P    +A  + R + ERL+  + D+ +DYS +P VV      GTVG++E  A +
Sbjct: 306 GAVELTP----VAVAAGRRLSERLFNNKPDEHLDYSNIPTVVFSHPPIGTVGLTEPQARE 361
Query: 439 VYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKG 498
            YG D + +YKSS+      +        +KLVC+   E+++GIH IG            
Sbjct: 362 QYGDDQVKVYKSSFTAMYTAVTTHRQPCRMKLVCVGSEEKIVGIHGIG------------ 409
Query: 499 GERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT 535
                G+         M+ G+++AL+   TK + D T
Sbjct: 410 ----FGMDE-------MLQGFAVALKMGATKKDFDNT 435

>pdb|1GSN|A Chain A, Human Glutathione Reductase Modified By Dinitrosoglutathione Length = 478

Iteration: 1
 Score =  107 bits (266), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 104/399 (26%), Positives = 182/399 (45%), Gaps = 49/399 (12%)
Query: 156 NWNAATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFT-NPH-TIKLSNRSVTGFNFLL 213
           NW    +    +  R        L    I+I+R  AAFT +P  TI++S +  T  + L+
Sbjct: 95  NWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSGKKYTAPHILI 154
Query: 214 AVERRCLPE-------PRNSALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVP 266
           A     +P        P  S  I++D  F+L   PG+++++G   +AVE+A  L+ LG  
Sbjct: 155 AT--GGMPSTPHESQIPGASLGITSDGFFQLEELPGRSVIVGAGYIAVEMAGILSALGSK 212
Query: 267 VTL-VYSRRLLKHFDQEMVRILLSSLTKAGVSI----QCCVIEKVISSFD--GMKGVRGF 319
            +L +   ++L+ FD  +       L  AGV +    Q   ++K +S  +   +  V G 
Sbjct: 213 TSLMIRHDKVLRSFDSMISTNXTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGR 272
Query: 320 HP-ESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAV 378
            P  +  P  D     +  +    D   L+L+ +G+    K +++ +E   T+V  I+AV
Sbjct: 273 LPVMTMIPDVDXLLWAIGRVPNTKD---LSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAV 329
Query: 379 GGIVHGKPNNASMAAISARLIIERLYGM-QDQLMDYSFLPVVVRGDVEFGTVGMSEEAAA 437
           G +  GK     +A  + R +  RL+   +D  +DY+ +P VV      GTVG++E+ A 
Sbjct: 330 GDVC-GKALLTPVAIAAGRKLAHRLFEYKEDSKLDYNNIPTVVFSHPPIGTVGLTEDEAI 388
Query: 438 KVYGADGLVIYKSSY-PTFDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCL 496
             YG + +  Y +S+ P +  +          K  C+                 +K+V  
Sbjct: 389 HKYGIENVKTYSTSFTPMYHAVTKR-------KTKCV-----------------MKMVXA 424
Query: 497 KGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT 535
              E+V+GIH+ G     M+ G+++A++   TKA+ D T
Sbjct: 425 NKEEKVVGIHMQGLGCDEMLQGFAVAVKMGATKADFDNT 463

>pdb|2R9Z|A Chain A, Glutathione Amide Reductase From Chromatium Gracile Length = 463

Iteration: 1
 Score =  100 bits (248), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 91/359 (25%), Positives = 168/359 (46%), Gaps = 35/359 (9%)
Query: 182 LGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAVE-RRCLPE-PRNSALISADDLFRLGA 239
           LGI  V   A F + HTI++  + ++  + ++A   R  +P  P     I++D  F L  
Sbjct: 105 LGITRVDGHARFVDAHTIEVEGQRLSADHIVIATGGRPIVPRLPGAELGITSDGFFALQQ 164
Query: 240 WPGKTLVLGGSLMAVEIAATLNFLGVPVTLV-YSRRLLKHFDQEMVRILLSSLTKAGVSI 298
            P +  ++G   + +E+A  L   G  VT+V    RLL  FD  +   L  ++   G+  
Sbjct: 165 QPKRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLFQFDPLLSATLAENMHAQGIET 224
Query: 299 QCCVIEKVISSFDGMKGVRGFHPESKEPFA-DVFKTVVNAMEKKFDFAALNLHHIGVDIK 357
               +E  +++ +  +  +G    +++    + F +V+ A+ +  +   L L   G++++
Sbjct: 225 H---LEFAVAALE--RDAQGTTLVAQDGTRLEGFDSVIWAVGRAPNTRDLGLEAAGIEVQ 279
Query: 358 KKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLY-GMQDQLMDYSFL 416
               V  +    T+V  ++A+G I  G+     +A  + R + ERL+ G  ++ +DY  +
Sbjct: 280 SNGMVPTDAYQNTNVPGVYALGDIT-GRDQLTPVAIAAGRRLAERLFDGQSERKLDYDNI 338
Query: 417 PVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVCLKGG 476
           P VV        VG+SE  A +  G D L +Y++S+      L+   P+  +KLVC    
Sbjct: 339 PTVVFAHPPLSKVGLSEPEARERLG-DVLTVYETSFTPMRYALNEHGPKTAMKLVCAGPE 397
Query: 477 ERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT 535
           +RV+G+HVIG           G +              M+ G+++A++   TKA+ D T
Sbjct: 398 QRVVGVHVIGD----------GADE-------------MLQGFAVAVKMGATKADFDNT 433

>pdb|4DNA|A Chain A, Crystal Structure Of Putative Glutathione Reductase From Sinorhizobium Meliloti 1021 Length = 463

Iteration: 1
 Score = 99.0 bits (245), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 86/318 (27%), Positives = 144/318 (45%), Gaps = 17/318 (5%)
Query: 179 LKALGIDIVRTAAAFTNPHTIKL--SNRSVTGFNFLLAVERRCLPE---PRNSALISADD 233
           L   G +I+ T A    P+T+KL  S ++VT    ++AV     P    P +   I++++
Sbjct: 103 LANAGAEILDTRAELAGPNTVKLLASGKTVTAERIVIAVGGHPSPHDALPGHELCITSNE 162
Query: 234 LFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVY-SRRLLKHFDQEMVRILLSSLT 292
            F L A P   L+ GG  +AVE A   + LGV  TL+Y  + +L  FDQ+  R L ++  
Sbjct: 163 AFDLPALPESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEILSRFDQDXRRGLHAAXE 222
Query: 293 KAGVSIQC-CVIEKVISSFDGMK-GVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLH 350
           + G+ I C  +I+ V +  DG +      H E       V   V  A+ +  +   L L 
Sbjct: 223 EKGIRILCEDIIQSVSADADGRRVATTXKHGEI------VADQVXLALGRXPNTNGLGLE 276
Query: 351 HIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQDQL 410
             GV   +   ++ +   +TS   I+A+G +   +     +A   A   IE  Y      
Sbjct: 277 AAGVRTNELGAIIVDAFSRTSTPGIYALGDVTD-RVQLTPVAIHEAXCFIETEYKNNPTS 335
Query: 411 MDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKL 470
            D+  +   V    E GTVG++EE AA+ +    + +Y++ +      L     +   KL
Sbjct: 336 PDHDLIATAVFSQPEIGTVGITEEEAARKF--QEIEVYRAEFRPXKATLSGRKEKTIXKL 393
Query: 471 VCLKGGERVLGIHVIGQN 488
           V      +V+G H++G +
Sbjct: 394 VVNAADRKVVGAHILGHD 411

>pdb|1ONF|A Chain A, Crystal Structure Of Plasmodium Falciparum Glutathione Reductase Length = 500

Iteration: 1
 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 90/376 (23%), Positives = 168/376 (44%), Gaps = 70/376 (18%)
Query: 201 LSNRSVTGFNFLLAVERRCLPEPRN--SALISADDLFRLGAWPGKTLVLGGSLMAVEIAA 258
           L+   + G N L+AV  + +  P       IS+D+ F +     K  ++G   +AVE+  
Sbjct: 135 LNEEILEGRNILIAVGNKPVFPPVKGIENTISSDEFFNIKE-SKKIGIVGSGYIAVELIN 193
Query: 259 TLNFLGVPVTLVYSR--RLLKHFDQEMVRILLSSLTKAGVSI----QCCVIEKVISSFDG 312
            +  LG+  + +++R  R+L+ FD+ ++ +L + + K  ++I        I+KV      
Sbjct: 194 VIKRLGID-SYIFARGNRILRKFDESVINVLENDMKKNNINIVTFADVVEIKKVSDKNLS 252
Query: 313 MKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSV 372
           +    G   E        F  V+  + +  D   L L  + V+    +Y+V +E  +TSV
Sbjct: 253 IHLSDGRIYEH-------FDHVIYCVGRSPDTENLKLEKLNVETNN-NYIVVDENQRTSV 304
Query: 373 GNIFAVGGI-----------------------VHGKPN-------NASMAAIS---ARLI 399
            NI+AVG                         ++ K N       N  +  ++    RL+
Sbjct: 305 NNIYAVGDCCMVKKSKEIEDLNLLKLYNEERYLNKKENVTEDIFYNVQLTPVAINAGRLL 364
Query: 400 IERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLL 459
            +RL+  + +  +Y  +P V+      GT+G+SEEAA ++YG + + IY+S +      +
Sbjct: 365 ADRLFLKKTRKTNYKLIPTVIFSHPPIGTIGLSEEAAIQIYGKENVKIYESKFTNLFFSV 424
Query: 460 DPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGY 519
             + PE                   + +  ++KLVC+   E + G+H+IG N   ++ G+
Sbjct: 425 YDIEPE-------------------LKEKTYLKLVCVGKDELIKGLHIIGLNADEIVQGF 465
Query: 520 SLALRKFLTKAELDGT 535
           ++AL+   TK + D T
Sbjct: 466 AVALKMNATKKDFDET 481

>pdb|2HQM|A Chain A, Crystal Structure Of Glutathione Reductase Glr1 From The Yeast Saccharomyces Cerevisiae Length = 479

Iteration: 1
 Score = 95.9 bits (237), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 88/395 (22%), Positives = 171/395 (43%), Gaps = 49/395 (12%)
Query: 156 NWNAATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSNR----SVTGFNF 211
           NW    +    +  R      + L+   +D+V   A F     +++  R     V   N 
Sbjct: 92  NWPEFKQKRDAYVHRLNGIYQKNLEKEKVDVVFGWARFNKDGNVEVQKRDNTTEVYSANH 151
Query: 212 LLAVE--RRCLPE--PRNSALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPV 267
           +L     +   PE  P       +D  FRL   P K +V+G   + +E+A   + LG   
Sbjct: 152 ILVATGGKAIFPENIPGFELGTDSDGFFRLEEQPKKVVVVGAGYIGIELAGVFHGLGSET 211
Query: 268 TLVY-SRRLLKHFDQEMVRILLSSLTKAGVSI----QCCVIEKVISSFDGMKGVRGFHPE 322
            LV     +L+ FD+ +   +     K G+++    +   +EK + + D +K     H  
Sbjct: 212 HLVIRGETVLRKFDECIQNTITDHYVKEGINVHKLSKIVKVEKNVET-DKLK----IHMN 266
Query: 323 SKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIV 382
             +   DV + +     K      +   ++G+ +     ++ +E   T+V NI+++G +V
Sbjct: 267 DSKSIDDVDELIWTIGRK--SHLGMGSENVGIKLNSHDQIIADEYQNTNVPNIYSLGDVV 324
Query: 383 HGKPNNASMAAISARLIIERLYG---MQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKV 439
            GK     +A  + R +  RL+G    ++  +DY  +P V+    E G++G+SE+ A + 
Sbjct: 325 -GKVELTPVAIAAGRKLSNRLFGPEKFRNDKLDYENVPSVIFSHPEAGSIGISEKEAIEK 383
Query: 440 YGADGLVIYKSSYPT-FDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKG 498
           YG + + +Y S +   +  +L    P  + K+VC    E+V+G+H++G ++         
Sbjct: 384 YGKENIKVYNSKFTAMYYAMLSEKSPTRY-KIVCAGPNEKVVGLHIVGDSS--------- 433
Query: 499 GERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELD 533
                         A ++ G+ +A++   TKA+ D
Sbjct: 434 --------------AEILQGFGVAIKMGATKADFD 454

>pdb|3O0H|A Chain A, Crystal Structure Of Glutathione Reductase From Bartonella Henselae Length = 484

Iteration: 1
 Score = 89.0 bits (219), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 88/338 (26%), Positives = 155/338 (45%), Gaps = 30/338 (8%)
Query: 169 IRAKNDSMRELKAL--------GIDIVRTAAAFTNPHTIKLS--NRSVTGFNFLLAVERR 218
           + AKN  +  L+ L         + I  + A F + HT++LS     ++    L+A   +
Sbjct: 106 VAAKNKEISRLEGLYREGLQNSNVHIYESRAVFVDEHTLELSVTGERISAEKILIATGAK 165
Query: 219 CLPEPRNSAL------ISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS 272
            +    NSA+      ++++++F L   P   +++GG  + VE A   + LGV  TL++ 
Sbjct: 166 IVS---NSAIKGSDLCLTSNEIFDLEKLPKSIVIVGGGYIGVEFANIFHGLGVKTTLLHR 222
Query: 273 RRL-LKHFDQEMVRILLSSLTKAGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPF-ADV 330
             L L++FD ++ ++L  ++   G+SI   + E  +S     +        + +   AD 
Sbjct: 223 GDLILRNFDYDLRQLLNDAMVAKGISI---IYEATVSQVQSTENCYNVVLTNGQTICAD- 278
Query: 331 FKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNAS 390
              V+ A  +  +   L L   GV + +   VV +EK  T+V +I+AVG +  G      
Sbjct: 279 --RVMLATGRVPNTTGLGLERAGVKVNEFGAVVVDEKMTTNVSHIWAVGDVT-GHIQLTP 335
Query: 391 MAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKS 450
           +A   A   ++  +       DY  +   V    E GTVG+SEE A   Y    + IY++
Sbjct: 336 VAIHDAMCFVKNAFENTSTTPDYDLITTAVFSQPEIGTVGLSEEDALHRY--KRVEIYRT 393
Query: 451 SYPTFDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQN 488
            +    N+L     + F+KLV       V+G HV+G+N
Sbjct: 394 VFRPMRNVLSGSPEKMFMKLVVDGESRIVVGAHVLGEN 431

>pdb|1EBD|A Chain A, Dihydrolipoamide Dehydrogenase Complexed With The Binding Domain Of The Dihydrolipoamide Acetylase Length = 455

Iteration: 1
 Score = 89.0 bits (219), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 98/404 (24%), Positives = 178/404 (44%), Gaps = 50/404 (12%)
Query: 143 EQDSTSALNVTI-----RNWNAATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPH 197
           E+    A NVTI     + W A+  ++K+     +      LK   ++IV+  A F + +
Sbjct: 66  EEMGIKAENVTIDFAKVQEWKAS--VVKKLTGGVEG----LLKGNKVEIVKGEAYFVDAN 119
Query: 198 TIKLSN----RSVTGFNFLLAVERRCLPEPR---NSALISADDLFRLGAWPGKTLVLGGS 250
           T+++ N    ++ T  N ++A   R +  P    ++ ++ +     LG  P   +V+GG 
Sbjct: 120 TVRVVNGDSAQTYTFKNAIIATGSRPIELPNFKFSNRILDSTGALNLGEVPKSLVVIGGG 179
Query: 251 LMAVEIAATLNFLGVPVTLVY-SRRLLKHFDQEMVRILLSSLTKAGVSIQCCVIEKVISS 309
            + +E+       G  VT++  +  +L  F+++M  I+   L K GV +    + K    
Sbjct: 180 YIGIELGTAYANFGTKVTILEGAGEILSGFEKQMAAIIKKRLKKKGVEVVTNALAKGAEE 239
Query: 310 -FDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKD 368
             DG+      + E+K   AD     V    ++ +   L L  IG+ +  +  +  +++ 
Sbjct: 240 REDGVTVTYEANGETKTIDADYVLVTVG---RRPNTDELGLEQIGIKMTNRGLIEVDQQC 296
Query: 369 QTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGT 428
           +TSV NIFA+G IV G P  A  A+   ++  E + G     +DY  +P VV  D E  +
Sbjct: 297 RTSVPNIFAIGDIVPG-PALAHKASYEGKVAAEAIAG-HPSAVDYVAIPAVVFSDPECAS 354
Query: 429 VGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQN 488
           VG  E+ A      +G+ +  + +P   N                    R L ++    +
Sbjct: 355 VGYFEQQAKD----EGIDVIAAKFPFAAN-------------------GRALALN--DTD 389
Query: 489 NFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAEL 532
            F+KLV  K    ++G  +IG N + MI    LA+   +T  ++
Sbjct: 390 GFLKLVVRKEDGVIIGAQIIGPNASDMIAELGLAIEAGMTAEDI 433

>pdb|2X50|A Chain A, Crystal Structure Of Trypanothione Reductase From Leishmania Infantum In Complex With Nadph And Silver Length = 510

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 77/294 (26%), Positives = 136/294 (46%), Gaps = 18/294 (6%)
Query: 223 PRNSALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNF---LGVPVTLVYSRRL-LKH 278
           P +   I++++ F L   P + L +GG  +AVE A   N     G  V L Y   L L+ 
Sbjct: 190 PGDEFCITSNEAFYLEDAPKRMLCVGGGYIAVEFAGIFNGYKPCGGYVDLCYRGDLILRG 249
Query: 279 FDQEMVRILLSSLTKAGVSIQCCV-IEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNA 337
           FD E+ + L   L   G+ ++  +   K+  + DG   V  F+  ++E +  V   +   
Sbjct: 250 FDTEVRKSLTKQLGANGIRVRTNLNPTKITKNEDGSNHVH-FNDGTEEDYDQVMLAIGRV 308
Query: 338 MEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISAR 397
              +    AL L   GV   K   V  +   +TSV NI+A+G + + +     +A     
Sbjct: 309 PRSQ----ALQLDKAGVRTGKNGAVQVDAYSKTSVDNIYAIGDVTN-RVMLTPVAINEGA 363
Query: 398 LIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSY-PTFD 456
             +E ++G + +  D++ +   V      GT GM+EE AAK Y  + + +Y SS+ P   
Sbjct: 364 AFVETVFGGKPRATDHTKVACAVFSIPPIGTCGMTEEEAAKNY--ETVAVYASSFTPLMH 421
Query: 457 NLLDPLLPENFVKLVCLKGGERVLGIHVIGQN--NFVKLV--CLKGGERVLGIH 506
           N+      E  ++++  +    VLG+H++G +    ++ V  C+K G ++   H
Sbjct: 422 NISGSKHKEFMIRIITNESNGEVLGVHMLGDSAPEIIQSVGICMKMGAKISDFH 475

>pdb|2JK6|A Chain A, Structure Of Trypanothione Reductase From Leishmania Infantum Length = 511

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 77/294 (26%), Positives = 136/294 (46%), Gaps = 18/294 (6%)
Query: 223 PRNSALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNF---LGVPVTLVYSRRL-LKH 278
           P +   I++++ F L   P + L +GG  +AVE A   N     G  V L Y   L L+ 
Sbjct: 190 PGDEFCITSNEAFYLEDAPKRMLCVGGGYIAVEFAGIFNGYKPCGGYVDLCYRGDLILRG 249
Query: 279 FDQEMVRILLSSLTKAGVSIQCCV-IEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNA 337
           FD E+ + L   L   G+ ++  +   K+  + DG   V  F+  ++E +  V   +   
Sbjct: 250 FDTEVRKSLTKQLGANGIRVRTNLNPTKITKNEDGSNHVH-FNDGTEEDYDQVMLAIGRV 308
Query: 338 MEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISAR 397
              +    AL L   GV   K   V  +   +TSV NI+A+G + + +     +A     
Sbjct: 309 PRSQ----ALQLDKAGVRTGKNGAVQVDAYSKTSVDNIYAIGDVTN-RVMLTPVAINEGA 363
Query: 398 LIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSY-PTFD 456
             +E ++G + +  D++ +   V      GT GM+EE AAK Y  + + +Y SS+ P   
Sbjct: 364 AFVETVFGGKPRATDHTKVACAVFSIPPIGTCGMTEEEAAKNY--ETVAVYASSFTPLMH 421
Query: 457 NLLDPLLPENFVKLVCLKGGERVLGIHVIGQN--NFVKLV--CLKGGERVLGIH 506
           N+      E  ++++  +    VLG+H++G +    ++ V  C+K G ++   H
Sbjct: 422 NISGSKHKEFMIRIITNESNGEVLGVHMLGDSAPEIIQSVGICMKMGAKISDFH 475

>pdb|1DXL|A Chain A, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase From Pisum Sativum Length = 470

Iteration: 1
 Score = 73.2 bits (178), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 77/315 (24%), Positives = 141/315 (44%), Gaps = 20/315 (6%)
Query: 187 VRTAAAFTNPH-----TIKLSNRSVTGFNFLLAV--ERRCLP--EPRNSALISADDLFRL 237
           V+    F +P      TI+  N  V G + ++A   + + LP        ++S+     L
Sbjct: 114 VKGYGKFVSPSEISVDTIEGENTVVKGKHIIIATGSDVKSLPGVTIDEKKIVSSTGALAL 173
Query: 238 GAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLV-YSRRLLKHFDQEMVRILLSSLTKAGV 296
              P K +V+G   + +E+ +    +G  VT+V ++  ++   D E+ +    SL K G+
Sbjct: 174 SEIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPTMDAEIRKQFQRSLEKQGM 233
Query: 297 SIQCCV-IEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVD 355
             +    +  V +S DG+K         ++   +    +V+A    F  + LNL  IGV+
Sbjct: 234 KFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRTPFT-SGLNLDKIGVE 292
Query: 356 IKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQDQLMDYSF 415
             K   ++ NE+  T+V  ++A+G ++ G P  A  A       +E L G    + DY  
Sbjct: 293 TDKLGRILVNERFSTNVSGVYAIGDVIPG-PMLAHKAEEDGVACVEYLAGKVGHV-DYDK 350
Query: 416 LPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLL--PENFVKLVCL 473
           +P VV  + E  +VG +EE   +     G+      +P   N     +   E  VK++  
Sbjct: 351 VPGVVYTNPEVASVGKTEEQVKET----GVEYRVGKFPFMANSRAKAIDNAEGLVKIIAE 406
Query: 474 KGGERVLGIHVIGQN 488
           K  +++LG+H++  N
Sbjct: 407 KETDKILGVHIMAPN 421

>pdb|2WOI|A Chain A, Trypanothione Reductase From Trypanosoma Brucei Length = 495

Iteration: 1
 Score = 71.6 bits (174), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 121/265 (45%), Gaps = 14/265 (5%)
Query: 229 ISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVP---VTLVYSRRL-LKHFDQEMV 284
           IS+++ F L   P + L +GG  ++VE A   N    P   VTL Y   L L+ FD+ + 
Sbjct: 179 ISSNEAFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLILRGFDETIR 238
Query: 285 RILLSSLTKAGVSIQCCV-IEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFD 343
             +   LT  G+ I       KV  + DG K V       K    DV    +  + +  D
Sbjct: 239 EEVTKQLTANGIEIMTNENPAKVSLNTDGSKHVT--FESGKTLDVDVVMMAIGRIPRTND 296
Query: 344 FAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERL 403
              L L ++GV +  K  V  +E  +T+V NI+A+G I   +     +A      +++ +
Sbjct: 297 ---LQLGNVGVKLTPKGGVQVDEFSRTNVPNIYAIGDITD-RLMLTPVAINEGAALVDTV 352
Query: 404 YGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSY-PTFDNLLDPL 462
           +G + +  D++ +   V      GT G+ EE AAK +  + + +Y SS+ P   N+    
Sbjct: 353 FGNKPRKTDHTRVASAVFSIPPIGTCGLIEEVAAKEF--EKVAVYMSSFTPLMHNISGSK 410
Query: 463 LPENFVKLVCLKGGERVLGIHVIGQ 487
             +   K+V       VLG+H++G 
Sbjct: 411 YKKFVAKIVTNHSDGTVLGVHLLGD 435

>pdb|2WBA|A Chain A, Properties Of Trypanothione Reductase From T. Brucei Length = 492

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 121/265 (45%), Gaps = 14/265 (5%)
Query: 229 ISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVP---VTLVYSRRL-LKHFDQEMV 284
           IS+++ F L   P + L +GG  ++VE A   N    P   VTL Y   L L+ FD+ + 
Sbjct: 176 ISSNEAFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLILRGFDETIR 235
Query: 285 RILLSSLTKAGVSIQCCV-IEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFD 343
             +   LT  G+ I       KV  + DG K V       K    DV    +  + +  D
Sbjct: 236 EEVTKQLTANGIEIMTNENPAKVSLNTDGSKHVT--FESGKTLDVDVVMMAIGRIPRTND 293
Query: 344 FAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERL 403
              L L ++GV +  K  V  +E  +T+V NI+A+G I   +     +A      +++ +
Sbjct: 294 ---LQLGNVGVKLTPKGGVQVDEFSRTNVPNIYAIGDITD-RLMLTPVAINEGAALVDTV 349
Query: 404 YGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSY-PTFDNLLDPL 462
           +G + +  D++ +   V      GT G+ EE AAK +  + + +Y SS+ P   N+    
Sbjct: 350 FGNKPRKTDHTRVASAVFSIPPIGTCGLIEEVAAKEF--EKVAVYMSSFTPLMHNISGSK 407
Query: 463 LPENFVKLVCLKGGERVLGIHVIGQ 487
             +   K+V       VLG+H++G 
Sbjct: 408 YKKFVAKIVTNHSDGTVLGVHLLGD 432

>pdb|2TPR|A Chain A, X-ray Structure Of Trypanothione Reductase From Crithidia Fasciculata At 2.4 Angstroms Resolution Length = 490

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/294 (23%), Positives = 131/294 (44%), Gaps = 24/294 (8%)
Query: 229 ISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFL---GVPVTLVY-SRRLLKHFDQEMV 284
           I++++ F L   P + L +GG  +++E A   N     G  V L Y    +L+ FD E+ 
Sbjct: 175 ITSNEAFYLDEAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELR 234
Query: 285 RILLSSLTKAGVSIQCCV-IEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFD 343
           + L   L   G++++      KV  + DG + V        E   DV    +  + +   
Sbjct: 235 KQLTEQLRANGINVRTHENPAKVTKNADGTRHV--VFESGAEADYDVVMLAIGRVPRS-- 290
Query: 344 FAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERL 403
              L L   GV++ K   +  +   +T+V NI+A+G +   +     +A       ++ +
Sbjct: 291 -QTLQLEKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDVTD-RVMLTPVAINEGAAFVDTV 348
Query: 404 YGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSY-PTFDNLLDPL 462
           +  + +  D++ +   V      G  G  EE AAK Y  D + +Y+SS+ P   N+    
Sbjct: 349 FANKPRATDHTKVACAVFSIPPMGVCGYVEEDAAKKY--DQVAVYESSFTPLMHNISGST 406
Query: 463 LPENFVKLVCLKGGERVLGIHVIGQNNFVKL----VCLKGGERV------LGIH 506
             +  V++V       VLG+H++G ++   +    +CLK G ++      +G+H
Sbjct: 407 YKKFMVRIVTNHADGEVLGVHMLGDSSPEIIQSVAICLKMGAKISDVYNTIGVH 460

>pdb|1FEA|A Chain A, Unliganded Crithidia Fasciculata Trypanothione Reductase At 2.2 Angstrom Resolution Length = 490

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/294 (23%), Positives = 131/294 (44%), Gaps = 24/294 (8%)
Query: 229 ISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFL---GVPVTLVY-SRRLLKHFDQEMV 284
           I++++ F L   P + L +GG  +++E A   N     G  V L Y    +L+ FD E+ 
Sbjct: 175 ITSNEAFYLDEAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELR 234
Query: 285 RILLSSLTKAGVSIQCCV-IEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFD 343
           + L   L   G++++      KV  + DG + V        E   DV    +  + +   
Sbjct: 235 KQLTEQLRANGINVRTHENPAKVTKNADGTRHV--VFESGAEADYDVVMLAIGRVPRS-- 290
Query: 344 FAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERL 403
              L L   GV++ K   +  +   +T+V NI+A+G +   +     +A       ++ +
Sbjct: 291 -QTLQLEKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDVTD-RVMLTPVAINEGAAFVDTV 348
Query: 404 YGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSY-PTFDNLLDPL 462
           +  + +  D++ +   V      G  G  EE AAK Y  D + +Y+SS+ P   N+    
Sbjct: 349 FANKPRATDHTKVACAVFSIPPMGVCGYVEEDAAKKY--DQVAVYESSFTPLMHNISGST 406
Query: 463 LPENFVKLVCLKGGERVLGIHVIGQNNFVKL----VCLKGGERV------LGIH 506
             +  V++V       VLG+H++G ++   +    +CLK G ++      +G+H
Sbjct: 407 YKKFMVRIVTNHADGEVLGVHMLGDSSPEIIQSVAICLKMGAKISDFYNTIGVH 460

>pdb|1TYT|A Chain A, Crystal And Molecular Structure Of Crithidia Fasciculata Trypanothione Reductase At 2.6 Angstroms Resolution Length = 487

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/294 (23%), Positives = 131/294 (44%), Gaps = 24/294 (8%)
Query: 229 ISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFL---GVPVTLVY-SRRLLKHFDQEMV 284
           I++++ F L   P + L +GG  +++E A   N     G  V L Y    +L+ FD E+ 
Sbjct: 176 ITSNEAFYLDEAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELR 235
Query: 285 RILLSSLTKAGVSIQCCV-IEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFD 343
           + L   L   G++++      KV  + DG + V        E   DV    +  + +   
Sbjct: 236 KQLTEQLRANGINVRTHENPAKVTKNADGTRHV--VFESGAEADYDVVMLAIGRVPRS-- 291
Query: 344 FAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERL 403
              L L   GV++ K   +  +   +T+V NI+A+G +   +     +A       ++ +
Sbjct: 292 -QTLQLDKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDVTD-RVMLTPVAINEGAAFVDTV 349
Query: 404 YGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSY-PTFDNLLDPL 462
           +  + +  D++ +   V      G  G  EE AAK Y  D + +Y+SS+ P   N+    
Sbjct: 350 FANKPRATDHTKVACAVFSIPPMGVCGYVEEDAAKKY--DQVAVYESSFTPLMHNISGST 407
Query: 463 LPENFVKLVCLKGGERVLGIHVIGQNNFVKL----VCLKGGERV------LGIH 506
             +  V++V       VLG+H++G ++   +    +CLK G ++      +G+H
Sbjct: 408 YKKFMVRIVTNHADGEVLGVHMLGDSSPEIIQSVAICLKMGAKISDFYNTIGVH 461

>pdb|1TYP|A Chain A, Substrate Interactions Between Trypanothione Reductase And N1-Glutathionylspermidine Disulphide At 0.28-Nm Resolution Length = 487

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/294 (23%), Positives = 131/294 (44%), Gaps = 24/294 (8%)
Query: 229 ISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFL---GVPVTLVY-SRRLLKHFDQEMV 284
           I++++ F L   P + L +GG  +++E A   N     G  V L Y    +L+ FD E+ 
Sbjct: 176 ITSNEAFYLDEAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELR 235
Query: 285 RILLSSLTKAGVSIQCCV-IEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFD 343
           + L   L   G++++      KV  + DG + V        E   DV    +  + +   
Sbjct: 236 KQLTEQLRANGINVRTHENPAKVTKNADGTRHV--VFESGAEADYDVVMLAIGRVPRS-- 291
Query: 344 FAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERL 403
              L L   GV++ K   +  +   +T+V NI+A+G +   +     +A       ++ +
Sbjct: 292 -QTLQLDKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDVTD-RVMLTPVAINEGAAFVDTV 349
Query: 404 YGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSY-PTFDNLLDPL 462
           +  + +  D++ +   V      G  G  EE AAK Y  D + +Y+SS+ P   N+    
Sbjct: 350 FANKPRATDHTKVACAVFSIPPMGVCGYVEEDAAKKY--DQVAVYESSFTPLMHNISGST 407
Query: 463 LPENFVKLVCLKGGERVLGIHVIGQNNFVKL----VCLKGGERV------LGIH 506
             +  V++V       VLG+H++G ++   +    +CLK G ++      +G+H
Sbjct: 408 YKKFMVRIVTNHADGEVLGVHMLGDSSPEIIQSVAICLKMGAKISDFYNTIGVH 461

>pdb|1LPF|A Chain A, Three-Dimensional Structure Of Lipoamide Dehydrogenase From Pseudomonas Fluorescens At 2.8 Angstroms Resolution. Analysis Of Redox And Thermostability Properties Length = 477

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 67/284 (23%), Positives = 132/284 (46%), Gaps = 15/284 (5%)
Query: 210 NFLLAVERRCL---PEP-RNSALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGV 265
           N ++A   R +   P P  +  ++ +       A P K  V+G  ++ +E+ +    LG 
Sbjct: 145 NVIIASGSRPVEIPPAPLSDDIIVDSTGALEFQAVPKKLGVIGAGVIGLELGSVWARLGA 204
Query: 266 PVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSIQCCVIEKVISSFDGMKGVRGFHPESK 324
            VT++ +  + L   D+++ +  L  LTK G++I+     +V +S    K V     ++ 
Sbjct: 205 EVTVLEALDKFLPAADEQIAKEALKVLTKQGLNIRLGA--RVTASEVKKKQVTVTFTDAN 262
Query: 325 EPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHG 384
               + F  ++ A+ ++     L     GV + ++ ++  ++  +TSV  +FA+G +V G
Sbjct: 263 GEQKETFDKLIVAVGRRPVTTDLLAADSGVTLDERGFIYVDDHCKTSVPGVFAIGDVVRG 322
Query: 385 KPNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADG 444
               A  A+    ++ ER+ G + Q M+Y  +P V+    E   VG +E+       A+G
Sbjct: 323 -AMLAHKASEEGVMVAERIAGHKAQ-MNYDLIPSVIYTHPEIAWVGKTEQ----TLKAEG 376
Query: 445 LVIYKSSYP--TFDNLLDPLLPENFVKLVCLKGGERVLGIHVIG 486
           + +   ++P       +        VK++     +RVLG+HVIG
Sbjct: 377 VEVNVGTFPFAASGRAMAANDTTGLVKVIADAKTDRVLGVHVIG 420

>pdb|1NDA|A Chain A, The Structure Of Trypanosoma Cruzi Trypanothione Reductase In The Oxidized And Nadph Reduced State Length = 491

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 81/307 (26%), Positives = 130/307 (42%), Gaps = 48/307 (15%)
Query: 229 ISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVP---VTLVY-SRRLLKHFDQEMV 284
           IS+++ F L   P + L +GG  ++VE A   N        VTL Y    +L+ FD  + 
Sbjct: 176 ISSNEAFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRGFDHTLR 235
Query: 285 RILLSSLTKAGVSIQCCVIE---KVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKK 341
             L   LT  G  IQ    E   KV  + DG K V  F    K  F  V   +  +   K
Sbjct: 236 EELTKQLTANG--IQILTKENPAKVELNADGSKSVT-FESGKKMDFDLVMMAIGRSPRTK 292
Query: 342 FDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIE 401
                L L + GV IK    V  +E  +T+V NI+A+G + + +     +A   A  +++
Sbjct: 293 ----DLQLQNAGVMIKNGG-VQVDEYSRTNVSNIYAIGDVTN-RVMLTPVAINEAAALVD 346
Query: 402 RLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDP 461
            ++G   +  D++ +   V      GT G+ EE A+K Y  + + +Y SS+        P
Sbjct: 347 TVFGTNPRKTDHTRVASAVFSIPPIGTCGLIEEVASKRY--EVVAVYLSSF-------TP 397
Query: 462 LLPENFVKLVCLKGGERVLGIHVIGQNNF----VKLVCLKGGERVLGIHVIGQNVAGMIF 517
           L+                   H I  + +     K++       VLG+H++G N   +I 
Sbjct: 398 LM-------------------HNISGSKYKTFVAKIITNHSDGTVLGVHLLGDNAPEIIQ 438
Query: 518 GYSLALR 524
           G  + L+
Sbjct: 439 GVGICLK 445

>pdb|1AOG|A Chain A, Trypanosoma Cruzi Trypanothione Reductase (Oxidized Form) Length = 485

Iteration: 1
 Score = 62.4 bits (150), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 128/303 (42%), Gaps = 40/303 (13%)
Query: 229 ISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVP---VTLVY-SRRLLKHFDQEMV 284
           IS+++ F L   P + L +GG  ++VE A   N        VTL Y    +L+ FD  + 
Sbjct: 175 ISSNEAFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRGFDHTLR 234
Query: 285 RILLSSLTKAGVSIQCCVIE---KVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKK 341
             L   LT  G  IQ    E   KV  + DG K V  F    K  F  V   +  +   K
Sbjct: 235 EELTKQLTANG--IQILTKENPAKVELNADGSKSVT-FESGKKMDFDLVMMAIGRSPRTK 291
Query: 342 FDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIE 401
                L L + GV IK    V  +E  +T+V NI+A+G + + +     +A   A  +++
Sbjct: 292 ----DLQLQNAGVMIKNGG-VQVDEYSRTNVSNIYAIGDVTN-RVMLTPVAINEAAALVD 345
Query: 402 RLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDP 461
            ++G   +  D++ +   V      GT G+ EE A+K Y  + + +Y SS   F  L+  
Sbjct: 346 TVFGTTPRKTDHTRVASAVFSIPPIGTCGLIEEVASKRY--EVVAVYLSS---FTPLMHK 400
Query: 462 LLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSL 521
           +    +   V                    K++       VLG+H++G N   +I G  +
Sbjct: 401 VSGSKYKTFVA-------------------KIITNHSDGTVLGVHLLGDNAPEIIQGIGI 441
Query: 522 ALR 524
            L+
Sbjct: 442 CLK 444

>pdb|1GXF|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione Reductase In Complex With The Inhibitor Quinacrine Mustard Length = 492

Iteration: 1
 Score = 62.4 bits (150), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 128/303 (42%), Gaps = 40/303 (13%)
Query: 229 ISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVP---VTLVY-SRRLLKHFDQEMV 284
           IS+++ F L   P + L +GG  ++VE A   N        VTL Y    +L+ FD  + 
Sbjct: 177 ISSNEAFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRGFDHTLR 236
Query: 285 RILLSSLTKAGVSIQCCVIE---KVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKK 341
             L   LT  G  IQ    E   KV  + DG K V  F    K  F  V   +  +   K
Sbjct: 237 EELTKQLTANG--IQILTKENPAKVELNADGSKSVT-FESGKKMDFDLVMMAIGRSPRTK 293
Query: 342 FDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIE 401
                L L + GV IK    V  +E  +T+V NI+A+G + + +     +A   A  +++
Sbjct: 294 ----DLQLQNAGVMIKNGG-VQVDEYSRTNVSNIYAIGDVTN-RVMLTPVAINEAAALVD 347
Query: 402 RLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDP 461
            ++G   +  D++ +   V      GT G+ EE A+K Y  + + +Y SS   F  L+  
Sbjct: 348 TVFGTTPRKTDHTRVASAVFSIPPIGTCGLIEEVASKRY--EVVAVYLSS---FTPLMHK 402
Query: 462 LLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSL 521
           +    +   V                    K++       VLG+H++G N   +I G  +
Sbjct: 403 VSGSKYKTFVA-------------------KIITNHSDGTVLGVHLLGDNAPEIIQGIGI 443
Query: 522 ALR 524
            L+
Sbjct: 444 CLK 446

>pdb|1BZL|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione Reductase In Complex With Trypanothione, And The Structure- Based Discovery Of New Natural Product Inhibitors Length = 486

Iteration: 1
 Score = 62.4 bits (150), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 128/303 (42%), Gaps = 40/303 (13%)
Query: 229 ISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVP---VTLVY-SRRLLKHFDQEMV 284
           IS+++ F L   P + L +GG  ++VE A   N        VTL Y    +L+ FD  + 
Sbjct: 176 ISSNEAFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRGFDHTLR 235
Query: 285 RILLSSLTKAGVSIQCCVIE---KVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKK 341
             L   LT  G  IQ    E   KV  + DG K V  F    K  F  V   +  +   K
Sbjct: 236 EELTKQLTANG--IQILTKENPAKVELNADGSKSVT-FESGKKMDFDLVMMAIGRSPRTK 292
Query: 342 FDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIE 401
                L L + GV IK    V  +E  +T+V NI+A+G + + +     +A   A  +++
Sbjct: 293 ----DLQLQNAGVMIKNGG-VQVDEYSRTNVSNIYAIGDVTN-RVMLTPVAINEAAALVD 346
Query: 402 RLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDP 461
            ++G   +  D++ +   V      GT G+ EE A+K Y  + + +Y SS   F  L+  
Sbjct: 347 TVFGTTPRKTDHTRVASAVFSIPPIGTCGLIEEVASKRY--EVVAVYLSS---FTPLMHK 401
Query: 462 LLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSL 521
           +    +   V                    K++       VLG+H++G N   +I G  +
Sbjct: 402 VSGSKYKTFVA-------------------KIITNHSDGTVLGVHLLGDNAPEIIQGIGI 442
Query: 522 ALR 524
            L+
Sbjct: 443 CLK 445

>pdb|3LAD|A Chain A, Refined Crystal Structure Of Lipoamide Dehydrogenase From Azotobacter Vinelandii At 2.2 Angstroms Resolution. A Comparison With The Structure Of Glutathione Reductase Length = 476

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/249 (24%), Positives = 117/249 (46%), Gaps = 11/249 (4%)
Query: 241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSR-RLLKHFDQEMVRILLSSLTKAGVSIQ 299
           PGK  V+G  ++ +E+ +    LG  VT++ +  + L   D+++ +     LTK G+ I 
Sbjct: 180 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPAVDEQVAKEAQKILTKQGLKIL 239
Query: 300 CCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKK 359
                +V  +    K V     +++   +  F  ++ A+ ++     L     GV + ++
Sbjct: 240 LGA--RVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVGRRPVTTDLLAADSGVTLDER 297
Query: 360 SYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQDQLMDYSFLPVV 419
            ++  ++   TSV  ++A+G +V G    A  A+    ++ ER+ G + Q M+Y  +P V
Sbjct: 298 GFIYVDDYCATSVPGVYAIGDVVRGA-MLAHKASEEGVVVAERIAGHKAQ-MNYDLIPAV 355
Query: 420 VRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYP--TFDNLLDPLLPENFVKLVCLKGGE 477
           +    E   VG +E+A      A+G+ I    +P       +       FVK++     +
Sbjct: 356 IYTHPEIAGVGKTEQA----LKAEGVAINVGVFPFAASGRAMAANDTAGFVKVIADAKTD 411
Query: 478 RVLGIHVIG 486
           RVLG+HVIG
Sbjct: 412 RVLGVHVIG 420

>pdb|2EQ7|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus Thermophilus Hb8 With Psbdo Length = 455

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 124/287 (43%), Gaps = 39/287 (13%)
Query: 241 PGKTLVLGGSLMAVEIAATLNFLGVPV-TLVYSRRLLKHFDQEMVRILLSSLTKAGVSIQ 299
           P + +V+GG ++ +E+    + LG  V  L Y  R+L   D E+ R       K G++I+
Sbjct: 167 PKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRILPTMDLEVSRAAERVFKKQGLTIR 226
Query: 300 CCVIEKVISSFDGMKGVRGFHPESKEPF-ADVFKTVVNAMEKKFDFAALNLHHIGVDIKK 358
             V  +V +     KG R    E  E   AD    V+ A+ ++     L+L + G+   +
Sbjct: 227 TGV--RVTAVVPEAKGAR-VELEGGEVLEAD---RVLVAVGRRPYTEGLSLENAGLSTDE 280
Query: 359 KSYVVCNEKDQTSVGNIFAVGGIVHGK--PNNASMAAISARLIIERLYGMQDQLMDYSFL 416
           +  +  +E  +T V +I+A+G +V G    + AS   I+A   + R +G     +DY  +
Sbjct: 281 RGRIPVDEHLRTRVPHIYAIGDVVRGPMLAHKASEEGIAAVEHMVRGFGH----VDYQAI 336
Query: 417 PVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVCLKGG 476
           P VV    E   VG +EE       A G+      +P                     G 
Sbjct: 337 PSVVYTHPEIAAVGYTEEE----LKAQGIPYKVGKFP-----------------YSASGR 375
Query: 477 ERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLAL 523
            R +G        F+K++     +R+LG+H IG  V  ++   +LAL
Sbjct: 376 ARAMG----ETEGFIKVLAHAKTDRILGVHGIGARVGDVLAEAALAL 418

>pdb|3URH|A Chain A, Crystal Structure Of A Dihydrolipoamide Dehydrogenase From Sinorhizobium Meliloti 1021 Length = 491

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 105/239 (43%), Gaps = 15/239 (6%)
Query: 254 VEIAATLNFLGVPVTLV-YSRRLLKHFDQEMVRILLSSLTKAGVSIQCCV-IEKVISSFD 311
           +E+ +    LG  VT+V +   +L   D E+ + L   LTK G+  +    +   + S D
Sbjct: 211 LELGSVWARLGAKVTVVEFLDTILGGXDGEVAKQLQRXLTKQGIDFKLGAKVTGAVKSGD 270
Query: 312 GMKGVRGFHP-ESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQT 370
           G K    F P +  E      + V+ A  +K     L L   GV +  +  V  +   QT
Sbjct: 271 GAKVT--FEPVKGGEATTLDAEVVLIATGRKPSTDGLGLAKAGVVLDSRGRVEIDRHFQT 328
Query: 371 SVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVG 430
           S+  ++A+G +V G P  A  A      + E + G Q   ++Y  +P VV    E  +VG
Sbjct: 329 SIAGVYAIGDVVRG-PXLAHKAEDEGVAVAEIIAG-QAGHVNYDVIPGVVYTQPEVASVG 386
Query: 431 MSEE---AAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVCLKGGERVLGIHVIG 486
            +EE   AA   Y      I K  +         L  + FVK++  K  +RVLG H+IG
Sbjct: 387 KTEEELKAAGVAY-----KIGKFPFTANGRARAXLQTDGFVKILADKETDRVLGGHIIG 440

>pdb|1ZK7|A Chain A, Crystal Structure Of Tn501 Mera Length = 467

Iteration: 1
 Score = 55.1 bits (131), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 73/313 (23%), Positives = 128/313 (40%), Gaps = 33/313 (10%)
Query: 220 LPEPRNSALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHF 279
           +P  + S   ++ +       P +  V+G S++A+E+A     LG  VT++    L    
Sbjct: 155 IPGLKESPYWTSTEALASDTIPERLAVIGSSVVALELAQAFARLGSKVTVLARNTLFFRE 214
Query: 280 DQEMVRILLSSLTKAGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAME 339
           D  +   + ++    G+ +        ++  DG   +   H E +   AD    ++ A  
Sbjct: 215 DPAIGEAVTAAFRAEGIEVLEHTQASQVAHMDGEFVLTTTHGELR---AD---KLLVATG 268
Query: 340 KKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLI 399
           +  +  +L L   GV +  +  +V ++  +TS  NI+A G     +P    +AA +    
Sbjct: 269 RTPNTRSLALDAAGVTVNAQGAIVIDQGMRTSNPNIYAAGDCTD-QPQFVYVAAAAGTRA 327
Query: 400 IERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLL 459
              + G  D  +D + +P VV  D +  TVG SE  A      DG+    S   T DN+ 
Sbjct: 328 AINMTG-GDAALDLTAMPAVVFTDPQVATVGYSEAEAHH----DGIET-DSRTLTLDNV- 380
Query: 460 DPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGY 519
            P    NF                      F+KLV  +G  R++G+  +      +I   
Sbjct: 381 -PRALANF------------------DTRGFIKLVIEEGSHRLIGVQAVAPEAGELIQTA 421
Query: 520 SLALRKFLTKAEL 532
           +LA+R  +T  EL
Sbjct: 422 ALAIRNRMTVQEL 434

>pdb|2EQ6|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus Thermophilus Hb8 Length = 464

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 86/363 (23%), Positives = 147/363 (40%), Gaps = 41/363 (11%)
Query: 179 LKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLA-----VERRCLPEPRNSALISADD 233
           LK  G++++R  A    P  +++        + +LA     +E +  P   +    S   
Sbjct: 103 LKGNGVELLRGFARLVGPKEVEVGGERYGAKSLILATGSEPLELKGFPFGED-VWDSTRA 161
Query: 234 LFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLV-YSRRLLKHFDQEMVRILLSSLT 292
           L      P + LV+GG  + +E+      LG  VTL+ Y   +L   D E   +L  +L 
Sbjct: 162 LKVEEGLPKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILPQGDPETAALLRRALE 221
Query: 293 KAGVSIQCCVIEKVIS---SFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNL 349
           K G+ ++     K +      DG+  VR    E  E    V   V+ A+ +K     L L
Sbjct: 222 KEGIRVRTKT--KAVGYEKKKDGLH-VRLEPAEGGEGEEVVVDKVLVAVGRKPRTEGLGL 278
Query: 350 HHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQDQ 409
              GV + ++ ++  N + +TSV  ++A+G     +P   +  A+   LI       +D 
Sbjct: 279 EKAGVKVDERGFIRVNARMETSVPGVYAIGDAA--RPPLLAHKAMREGLIAAENAAGKDS 336
Query: 410 LMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVK 469
             DY  +P VV    E+  VG++EE A +     G  +    +P                
Sbjct: 337 AFDYQ-VPSVVYTSPEWAGVGLTEEEAKRA----GYKVKVGKFP---------------- 375
Query: 470 LVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTK 529
            +   G    LG    G    VK+V  +  + +LG+ ++G     +I   +LAL    T 
Sbjct: 376 -LAASGRALTLG----GAEGMVKVVGDEETDLLLGVFIVGPQAGELIAEAALALEMGATL 430
Query: 530 AEL 532
            +L
Sbjct: 431 TDL 433

>pdb|3RNM|A Chain A, The Crystal Structure Of The Subunit Binding Of Human Dihydrolipoamide Transacylase (E2b) Bound To Human Dihydrolipoamide Dehydrogenase (E3) Length = 495

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 67/289 (23%), Positives = 115/289 (39%), Gaps = 21/289 (7%)
Query: 210 NFLLAVERRCLPEP----RNSALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGV 265
           N L+A      P P        ++S+     L   P K +V+G  ++ VE+ +    LG 
Sbjct: 164 NILIATGSEVTPFPGITIDEDTIVSSTGALSLKKVPEKMVVIGAGVIGVELGSVWQRLGA 223
Query: 266 PVTLVYSRRLLKH-----FDQEMVRILLSSLTKAGVSIQCCV-IEKVISSFDGMKGVRGF 319
            VT V     L H      D E+ +     L K G   +    +       DG   V   
Sbjct: 224 DVTAV---EFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVSIE 280
Query: 320 HPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVG 379
                +        ++  + ++     L L  +G+++  +  +  N + QT + NI+A+G
Sbjct: 281 AASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQTKIPNIYAIG 340
Query: 380 GIVHGKPNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKV 439
            +V G P  A  A     + +E + G    + DY+ +P V+    E   VG SEE   + 
Sbjct: 341 DVVAG-PMLAHKAEDEGIICVEGMAGGAVHI-DYNCVPSVIYTHPEVAWVGKSEEQLKE- 397
Query: 440 YGADGLVIYKSSYPTFDN--LLDPLLPENFVKLVCLKGGERVLGIHVIG 486
              +G+      +P   N         +  VK++  K  +RVLG H++G
Sbjct: 398 ---EGIEYKVGKFPFAANSRAKTNADTDGMVKILGQKSTDRVLGAHILG 443

>pdb|1ZMC|A Chain A, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase Complexed To Nad+ Length = 474

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 67/289 (23%), Positives = 115/289 (39%), Gaps = 21/289 (7%)
Query: 210 NFLLAVERRCLPEP----RNSALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGV 265
           N L+A      P P        ++S+     L   P K +V+G  ++ VE+ +    LG 
Sbjct: 143 NILIATGSEVTPFPGITIDEDTIVSSTGALSLKKVPEKMVVIGAGVIGVELGSVWQRLGA 202
Query: 266 PVTLVYSRRLLKH-----FDQEMVRILLSSLTKAGVSIQCCV-IEKVISSFDGMKGVRGF 319
            VT V     L H      D E+ +     L K G   +    +       DG   V   
Sbjct: 203 DVTAV---EFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVSIE 259
Query: 320 HPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVG 379
                +        ++  + ++     L L  +G+++  +  +  N + QT + NI+A+G
Sbjct: 260 AASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQTKIPNIYAIG 319
Query: 380 GIVHGKPNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKV 439
            +V G P  A  A     + +E + G    + DY+ +P V+    E   VG SEE   + 
Sbjct: 320 DVVAG-PMLAHKAEDEGIICVEGMAGGAVHI-DYNCVPSVIYTHPEVAWVGKSEEQLKE- 376
Query: 440 YGADGLVIYKSSYPTFDN--LLDPLLPENFVKLVCLKGGERVLGIHVIG 486
              +G+      +P   N         +  VK++  K  +RVLG H++G
Sbjct: 377 ---EGIEYKVGKFPFAANSRAKTNADTDGMVKILGQKSTDRVLGAHILG 422

>pdb|1ZY8|A Chain A, The Crystal Structure Of Dihydrolipoamide Dehydrogenase And Dihydrolipoamide Dehydrogenase-Binding Protein (Didomain) Subcomplex Of Human Pyruvate Dehydrogenase Complex. Length = 474

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 67/289 (23%), Positives = 115/289 (39%), Gaps = 21/289 (7%)
Query: 210 NFLLAVERRCLPEP----RNSALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGV 265
           N L+A      P P        ++S+     L   P K +V+G  ++ VE+ +    LG 
Sbjct: 143 NILIATGSEVTPFPGITIDEDTIVSSTGALSLKKVPEKMVVIGAGVIGVELGSVWQRLGA 202
Query: 266 PVTLVYSRRLLKH-----FDQEMVRILLSSLTKAGVSIQCCV-IEKVISSFDGMKGVRGF 319
            VT V     L H      D E+ +     L K G   +    +       DG   V   
Sbjct: 203 DVTAV---EFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVSIE 259
Query: 320 HPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVG 379
                +        ++  + ++     L L  +G+++  +  +  N + QT + NI+A+G
Sbjct: 260 AASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQTKIPNIYAIG 319
Query: 380 GIVHGKPNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKV 439
            +V G P  A  A     + +E + G    + DY+ +P V+    E   VG SEE   + 
Sbjct: 320 DVVAG-PMLAHKAEDEGIICVEGMAGGAVHI-DYNCVPSVIYTHPEVAWVGKSEEQLKE- 376
Query: 440 YGADGLVIYKSSYPTFDN--LLDPLLPENFVKLVCLKGGERVLGIHVIG 486
              +G+      +P   N         +  VK++  K  +RVLG H++G
Sbjct: 377 ---EGIEYKVGKFPFAANSRAKTNADTDGMVKILGQKSTDRVLGAHILG 422

>pdb|1LVL|A Chain A, The Refined Structure Of Pseudomonas Putida Lipoamide Dehydrogenase Complexed With Nad+ At 2.45 Angstroms Resolution Length = 458

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 73/324 (22%), Positives = 135/324 (41%), Gaps = 38/324 (11%)
Query: 179 LKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAVERRC--LPE-PRNSALISADDLF 235
           LK  G+ +V   A   +   +++  + +   + LLA       LP  P    +IS+ +  
Sbjct: 106 LKKHGVKVVHGWAKVLDGKQVEVDGQRIQCEHLLLATGSSSVELPMLPLGGPVISSTEAL 165
Query: 236 RLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSR-RLLKHFDQEMVRILLSSLTKA 294
              A P   +V+GG  + +E+      LG  V++V +R R+L  +D E+   +  SL K 
Sbjct: 166 APKALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPTYDSELTAPVAESLKKL 225
Query: 295 GVSIQC----------CVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDF 344
           G+++            C++       DG  G      E+      V +       K F+ 
Sbjct: 226 GIALHLGHSVEGYENGCLLAN-----DGKGGQ--LRLEADRVLVAVGR---RPRTKGFNL 275
Query: 345 AALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLY 404
             L+L   G      + +  +E+ QTS+ N++A+G +  G+P  A  A     ++ E + 
Sbjct: 276 ECLDLKMNG------AAIAIDERCQTSMHNVWAIGDVA-GEPMLAHRAMAQGEMVAEIIA 328
Query: 405 GMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDN--LLDPL 462
           G + +  + + +  V   D E   VG + E A++     GL    + +P   N   +   
Sbjct: 329 G-KARRFEPAAIAAVCFTDPEVVVVGKTPEQASQ----QGLDCIVAQFPFAANGRAMSLE 383
Query: 463 LPENFVKLVCLKGGERVLGIHVIG 486
               FV++V  +    +LG   +G
Sbjct: 384 SKSGFVRVVARRDNHLILGWQAVG 407

>pdb|2QAE|A Chain A, Crystal Structure Analysis Of Trypanosoma Cruzi Lipoamide Dehydrogenase Length = 468

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 64/301 (21%), Positives = 122/301 (40%), Gaps = 33/301 (10%)
Query: 228 LISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLV-YSRRLLKHFDQEMVRI 286
           ++S+     L   P   +V+GG ++ +E+ +    LG  VT+V ++ R     D+++   
Sbjct: 161 VLSSTGALALPRVPKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAPTLDEDVTNA 220
Query: 287 LLSSLTKAGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKT---VVNAMEKKFD 343
           L+ +L K    ++     KV+   +    V     E K    +       +V+   + F 
Sbjct: 221 LVGALAK-NEKMKFMTSTKVVGGTNNGDSVS-LEVEGKNGKRETVTCEALLVSVGRRPFT 278
Query: 344 FAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERL 403
              L L  I V   ++ +V   +  +TS+ +++A+G +V   P  A  A        E L
Sbjct: 279 -GGLGLDKINVAKNERGFVKIGDHFETSIPDVYAIGDVVDKGPMLAHKAEDEGVACAEIL 337
Query: 404 YGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLL 463
            G    + +Y  +P V+    E  +VG SE+   K    +G+      +P   N      
Sbjct: 338 AGKPGHV-NYGVIPAVIYTMPEVASVGKSEDELKK----EGVAYKVGKFPFNAN------ 386
Query: 464 PENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLAL 523
                         R   +    ++ FVK++  K  +R+LG+H++      +I    LA+
Sbjct: 387 -------------SRAKAVST--EDGFVKVLVDKATDRILGVHIVCTTAGELIGEACLAM 431
Query: 524 R 524
Sbjct: 432 E 432

>pdb|3IC9|A Chain A, The Structure Of Dihydrolipoamide Dehydrogenase From Colwellia Psychrerythraea 34h. Length = 492

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 101/226 (44%), Gaps = 17/226 (7%)
Query: 185 DIVRTAAAFTNPHTIKLSNRS-VTGFNFLLAV-ERRCLPE---PRNSALISADDLFRLGA 239
           D +R  A F + HT+++ + S V     ++A   R   PE      S L++ D+LF L  
Sbjct: 113 DKIRGFAKFLDEHTLQVDDHSQVIAKRIVIATGSRPNYPEFLAAAGSRLLTNDNLFELND 172
Query: 240 WPGKTLVLGGSLMAVEIAATLNFLGVPVTLV-YSRRLLKHFDQEMVRILLSSLTKAGVSI 298
            P    V G  ++ +E+   L+ LGV V +   S  +    D+E  R    +  +     
Sbjct: 173 LPKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVANLQDEEXKRYAEKTFNE---EF 229
Query: 299 QCCVIEKVISSFDGMKGVRG-FHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIK 357
                 +VIS+ +    V   +  +S +   + F+ V+ A  +K +   L L +  +++ 
Sbjct: 230 YFDAKARVISTIEKEDAVEVIYFDKSGQKTTESFQYVLAATGRKANVDKLGLENTSIELD 289
Query: 358 KKSYVVCNEKD-QTSVGNIFAVGG------IVHGKPNNASMAAISA 396
           KK+  + +E   QTSV +IF  G       ++H   ++  +A  +A
Sbjct: 290 KKNSPLFDELTLQTSVDHIFVAGDANNTLTLLHEAADDGKVAGTNA 335

>pdb|1MO9|A Chain A, Nadph Dependent 2-Ketopropyl Coenzyme M OxidoreductaseCARBOXYLASE Complexed With 2-Ketopropyl Coenzyme M Length = 523

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 86/368 (23%), Positives = 142/368 (38%), Gaps = 47/368 (12%)
Query: 186 IVRTAAAFTNPHTIKLSNRSVTGFNFLLAVERRCLPEPRNSALISADDLF-------RLG 238
           I+   A   + HT++ + +     N +LAV     P   +   ++A  +F        L 
Sbjct: 153 ILNCPAKVIDNHTVEAAGKVFKAKNLILAV--GAGPGTLDVPGVNAKGVFDHATLVEELD 210
Query: 239 AWPGKTLVL-GGSLMAVEIAATLNFLGV-PVTLVYSRRLLKHFDQEMVRILLSSLTKAGV 296
             PG T+V+ GGS  AVE     N  G   V LV +  L    D E    +L  + + G+
Sbjct: 211 YEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLIKDNETRAYVLDRMKEQGM 270
Query: 297 SI-QCCVIEKVISSFDG-MKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHH--- 351
            I     + ++    +G ++ V    P  +             M  + DF  L L     
Sbjct: 271 EIISGSNVTRIEEDANGRVQAVVAMTPNGE-------------MRIETDFVFLGLGEQPR 317
Query: 352 -------IGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLY 404
                  +G+D+  K  V+ NE  QTSV N++AVG ++ G P     A  S       + 
Sbjct: 318 SAELAKILGLDLGPKGEVLVNEYLQTSVPNVYAVGDLI-GGPMEMFKARKSGCYAARNVM 376
Query: 405 GMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLP 464
           G +      ++ P  +    E   +GM EE A     A   ++     P  +N L+  LP
Sbjct: 377 GEKISYTPKNY-PDFLHTHYEVSFLGMGEEEAR---AAGHEIVTIKMPPDTENGLNVALP 432
Query: 465 ENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALR 524
            +   ++         G      + F K+V      +VLG H +G          ++ ++
Sbjct: 433 ASDRTML------YAFGKGTAHMSGFQKIVIDAKTRKVLGAHHVGYGAKDAFQYLNVLIK 486
Query: 525 KFLTKAEL 532
           + LT  EL
Sbjct: 487 QGLTVDEL 494

>pdb|3L8K|A Chain A, Crystal Structure Of A Dihydrolipoyl Dehydrogenase From Sulfolobus Solfataricus Length = 466

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 62/269 (23%), Positives = 113/269 (42%), Gaps = 22/269 (8%)
Query: 229 ISADDLF----RLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLV--YSRRLLKHFDQE 282
           +++DD+F         P   +++G   + +EIA+    +GV   ++    R L+   DQ+
Sbjct: 156 LTSDDIFGYKTSFRKLPQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALITLEDQD 215
Query: 283 MVRILLSSLTKAGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKF 342
           +V  LLS L K  +     V E      D  + +      SK+    +F   V     + 
Sbjct: 216 IVNTLLSIL-KLNIKFNSPVTEVKKIKDDEYEVIYSTKDGSKK---SIFTNSVVLAAGRR 271
Query: 343 DFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVG---GIVHGKPNNASMAAISARLI 399
                    IG+ I K   +V +E  +T++ N+FA G   G+         M+  +A  I
Sbjct: 272 PVIPEGAREIGLSISKTG-IVVDETMKTNIPNVFATGDANGLAPYYHAAVRMSIAAANNI 330
Query: 400 IERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLL 459
           +    GM    +D   +PV +        VG+    A K+    G+ I ++ Y   +++ 
Sbjct: 331 MAN--GMPVDYVDVKSIPVTIYTIPSLSYVGILPSKARKM----GIEIVEAEYNMEEDVS 384
Query: 460 DPLL--PENFVKLVCLKGGERVLGIHVIG 486
             +    E  +KL+  +G  R++G  +IG
Sbjct: 385 AQIYGQKEGVLKLIFERGSMRLIGAWMIG 413

>pdb|2A8X|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Mycobacterium Tuberculosis Length = 464

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 70/283 (24%), Positives = 118/283 (41%), Gaps = 36/283 (12%)
Query: 255 EIAATLNFLGVPVTLV-YSRRLLKHFDQEMVRILLSSLTKAGVSIQCCVIEKVISSFDGM 313
           E    L   GV VT+V +  R L + D ++ + +     K GV+I      KV S  DG 
Sbjct: 185 EFGYVLKNYGVDVTIVEFLPRALPNEDADVSKEIEKQFKKLGVTILTAT--KVESIADG- 241
Query: 314 KGVRGFHPESKEPFADVFKT--VVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTS 371
            G +     +K+  A   K   V+ A+    +     L   GV +  +  +  ++  +T+
Sbjct: 242 -GSQVTVTVTKDGVAQELKAEKVLQAIGFAPNVEGYGLDKAGVALTDRKAIGVDDYXRTN 300
Query: 372 VGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQD-QLMDYSFLPVVVRGDVEFGTVG 430
           VG+I+A+G  V+G    A +A     +  E + G +   L D+  LP          + G
Sbjct: 301 VGHIYAIGD-VNGLLQLAHVAEAQGVVAAETIAGAETLTLGDHRXLPRATFCQPNVASFG 359
Query: 431 MSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQ-NN 489
           ++E+ A      +G  +  + +P   N                         H +G  + 
Sbjct: 360 LTEQQARN----EGYDVVVAKFPFTANAK----------------------AHGVGDPSG 393
Query: 490 FVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAEL 532
           FVKLV       +LG H++G +VA ++   +LA R  LT +EL
Sbjct: 394 FVKLVADAKHGELLGGHLVGHDVAELLPELTLAQRWDLTASEL 436

>pdb|3II4|A Chain A, Structure Of Mycobacterial Lipoamide Dehydrogenase Bound To A Triazaspirodimethoxybenzoyl Inhibitor Length = 466

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 70/284 (24%), Positives = 119/284 (41%), Gaps = 36/284 (12%)
Query: 254 VEIAATLNFLGVPVTLV-YSRRLLKHFDQEMVRILLSSLTKAGVSIQCCVIEKVISSFDG 312
           +E    L   GV VT+V +  R L + D ++ + +     K GV+I      KV S  DG
Sbjct: 186 MEFGYVLKNYGVDVTIVEFLPRALPNEDADVSKEIEKQFKKLGVTILTAT--KVESIADG 243
Query: 313 MKGVRGFHPESKEPFADVFKT--VVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQT 370
             G +     +K+  A   K   V+ A+    +     L   GV +  +  +  ++  +T
Sbjct: 244 --GSQVTVTVTKDGVAQELKAEKVLQAIGFAPNVEGYGLDKAGVALTDRKAIGVDDYMRT 301
Query: 371 SVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQD-QLMDYSFLPVVVRGDVEFGTV 429
           +VG+I+A+G  V+G    A +A     +  E + G +   L D+  LP          + 
Sbjct: 302 NVGHIYAIGD-VNGLLQLAHVAEAQGVVAAETIAGAETLTLGDHRMLPRATFCQPNVASF 360
Query: 430 GMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQ-N 488
           G++E+ A      +G  +  + +P   N                         H +G  +
Sbjct: 361 GLTEQQARN----EGYDVVVAKFPFTANAK----------------------AHGVGDPS 394
Query: 489 NFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAEL 532
            FVKLV       +LG H++G +VA ++   +LA R  LT +EL
Sbjct: 395 GFVKLVADAKHGELLGGHLVGHDVAELLPELTLAQRWDLTASEL 438

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	535
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	3e-66
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	9e-66
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	1e-64
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	3e-64
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	1e-62
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	2e-62
4dna_A	463	Probable glutathione reductase; structural genomic	4e-62
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	2e-61
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	8e-61
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	9e-61
1fec_A	490	Trypanothione reductase; redox-active center, oxid	3e-57
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	1e-56
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	9e-50
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	1e-31
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	1e-27
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	6e-23
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	1e-20
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	4e-19
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	2e-18
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	3e-18
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	6e-18
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	1e-17
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	2e-17
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	2e-17
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	1e-16
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	2e-16
1ojt_A	482	Surface protein; redox-active center, glycolysis,	5e-16
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	5e-16
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	6e-16
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	6e-13
1yqz_A	438	Coenzyme A disulfide reductase; oxidoreductase; HE	7e-13
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	1e-12
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	8e-12
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	9e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-05
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	5e-11
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	6e-10
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	7e-10
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	1e-09
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	3e-09
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	3e-08
4fk1_A	304	Putative thioredoxin reductase; structural genomic	5e-05
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	4e-04
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	8e-04
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	8e-04

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* Length = 483

 Score =  221 bits (565), Expect = 3e-66
 Identities = 111/368 (30%), Positives = 182/368 (49%), Gaps = 32/368 (8%)

Query: 177 RELKALGIDIVRTAAAFTNPHTIKLSN----RSVTGFNFLLAV-ERRCLPE-PRNSAL-I 229
            +L+   ++ +    +F + HT+        R++T   F++AV  R   P+ P      I
Sbjct: 116 VDLRDKKVEYINGLGSFVDSHTLLAKLKSGERTITAQTFVIAVGGRPRYPDIPGAVEYGI 175

Query: 230 SADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILLS 289
           ++DDLF L   PGKTLV+G   + +E A  L  LG   T++    +L+ FDQ+M  ++ +
Sbjct: 176 TSDDLFSLDREPGKTLVVGAGYIGLECAGFLKGLGYEPTVMVRSIVLRGFDQQMAELVAA 235

Query: 290 SLTKAGVSIQC-CVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALN 348
           S+ + G+      V   V    DG   V+  + E+ E   DV+ TV+ A+ +K     LN
Sbjct: 236 SMEERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGLVDDLN 295

Query: 349 LHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQD 408
           L + GV + +K  +  + ++ T+V NI+AVG I++GKP    +A ++ RL+  RLYG   
Sbjct: 296 LPNAGVTV-QKDKIPVDSQEATNVANIYAVGDIIYGKPELTPVAVLAGRLLARRLYGGST 354

Query: 409 QLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSY-PTFDNLLDPLLPENF 467
           Q MDY  +   V   +E+  VG+SEE A K +GAD + ++   Y PT   +    +   +
Sbjct: 355 QRMDYKDVATTVFTPLEYACVGLSEEDAVKQFGADEIEVFHGYYKPTEFFIPQKSVRYCY 414

Query: 468 VKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFL 527
           +K V  + G+                      +RV G+H IG     +I G++ AL+  L
Sbjct: 415 LKAVAERHGD----------------------QRVYGLHYIGPVAGEVIQGFAAALKSGL 452

Query: 528 TKAELDGT 535
           T   L  T
Sbjct: 453 TINTLINT 460

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* Length = 519

 Score =  221 bits (565), Expect = 9e-66
 Identities = 105/373 (28%), Positives = 173/373 (46%), Gaps = 36/373 (9%)

Query: 177 RELKALGIDIVRTAAAFTNPHTIKLSN-----RSVTGFNFLLAV-ERRCLPE-PRNSAL- 228
             L+   +        F  PH IK +N     +  +   FL+A  ER      P +    
Sbjct: 138 VALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRYLGIPGDKEYC 197

Query: 229 ISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILL 288
           IS+DDLF L   PGKTLV+G S +A+E A  L  +G+ VT++    LL+ FDQ+M   + 
Sbjct: 198 ISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIG 257

Query: 289 SSLTKAGVSI--QCCV--IEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDF 344
             + + G+    Q     +E++ +   G   V      S+E     + TV+ A+ +    
Sbjct: 258 EHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACT 317

Query: 345 AALNLHHIGVDIKKKS-YVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERL 403
             + L  +GV I +K+  +   +++QT+V  I+A+G I+  K     +A  + RL+ +RL
Sbjct: 318 RKIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRL 377

Query: 404 YGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSY-PTFDNLLDPL 462
           Y       DY  +P  V   +E+G  G+SEE A + +G + + +Y S + P    +    
Sbjct: 378 YAGSTVKCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVYHSYFWPLEWTIPSRD 437

Query: 463 LPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLA 522
             + + K++C                        K  ERV+G HV+G N   +  G++ A
Sbjct: 438 NNKCYAKIICNT----------------------KDNERVVGFHVLGPNAGEVTQGFAAA 475

Query: 523 LRKFLTKAELDGT 535
           L+  LTK +LD T
Sbjct: 476 LKCGLTKKQLDST 488

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* Length = 450

 Score =  216 bits (552), Expect = 1e-64
 Identities = 93/364 (25%), Positives = 163/364 (44%), Gaps = 34/364 (9%)

Query: 177 RELKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAV-ERRCLPE-PRNSALISADDL 234
             L    +D+++  A F +  T++++  ++T  + L+A   R   P+ P     I +D  
Sbjct: 101 NVLGKNNVDVIKGFARFVDAKTLEVNGETITADHILIATGGRPSHPDIPGVEYGIDSDGF 160

Query: 235 FRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVY-SRRLLKHFDQEMVRILLSSLTK 293
           F L A P +  V+G   + VE+   +N LG    L       L  FD  +   L+  +  
Sbjct: 161 FALPALPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPSFDPMISETLVEVMNA 220

Query: 294 AGVSIQC-CVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHI 352
            G  +    + + V+ + DG   +     E      +    ++ A+ ++     +NL   
Sbjct: 221 EGPQLHTNAIPKAVVKNTDGSLTL---ELEDGRS--ETVDCLIWAIGREPANDNINLEAA 275

Query: 353 GVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYG-MQDQLM 411
           GV   +K Y+V ++   T++  I+AVG    G      +A  + R + ERL+    D+ +
Sbjct: 276 GVKTNEKGYIVVDKYQNTNIEGIYAVGDNT-GAVELTPVAVAAGRRLSERLFNNKPDEHL 334

Query: 412 DYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLV 471
           DYS +P VV      GTVG++E  A + YG D + +YKSS+         +         
Sbjct: 335 DYSNIPTVVFSHPPIGTVGLTEPQAREQYGDDQVKVYKSSF-------TAM--------- 378

Query: 472 CLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAE 531
                   +  H   Q   +KLVC+   E+++GIH IG  +  M+ G+++AL+   TK +
Sbjct: 379 -----YTAVTTH--RQPCRMKLVCVGSEEKIVGIHGIGFGMDEMLQGFAVALKMGATKKD 431

Query: 532 LDGT 535
            D T
Sbjct: 432 FDNT 435

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* Length = 488

 Score =  216 bits (552), Expect = 3e-64
 Identities = 92/371 (24%), Positives = 171/371 (46%), Gaps = 34/371 (9%)

Query: 177 RELKALGIDIVRTAAAFTNPHTIKLSN-----RSVTGFNFLLAV-ERRCLPE--PRNSAL 228
            +L+   +      A+F + HT++  +       ++  + ++A   R   P         
Sbjct: 112 VQLQDRKVKYFNIKASFVDEHTVRGVDKGGKATLLSAEHIVIATGGRPRYPTQVKGALEY 171

Query: 229 -ISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRIL 287
            I++DD+F L   PGKTLV+G S +A+E A  L  +G+  T++     L+ FDQ+M  ++
Sbjct: 172 GITSDDIFWLKESPGKTLVVGASYVALECAGFLTGIGLDTTVMMRSIPLRGFDQQMSSLV 231

Query: 288 LSSLTKAGVSIQC-CVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAA 346
              +   G      CV   +         V      S +     F TV+ A+ +  +   
Sbjct: 232 TEHMESHGTQFLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPETRT 291

Query: 347 LNLHHIGVDIKKKSY-VVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYG 405
           LNL   G+    K+  ++ + ++ TSV +I+A+G +  G+P     A  + +L+ +RL+G
Sbjct: 292 LNLEKAGISTNPKNQKIIVDAQEATSVPHIYAIGDVAEGRPELTPTAIKAGKLLAQRLFG 351

Query: 406 MQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSY-PTFDNLLDPLLP 464
               LMDYS +P  V   +E+G VG+SEE A  ++G + + +Y + Y P    + D    
Sbjct: 352 KSSTLMDYSNVPTTVFTPLEYGCVGLSEEEAVALHGQEHVEVYHAYYKPLEFTVADRDAS 411

Query: 465 ENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALR 524
           + ++K+VC++                         + VLG+H +G N   +  G++L ++
Sbjct: 412 QCYIKMVCMREPP----------------------QLVLGLHFLGPNAGEVTQGFALGIK 449

Query: 525 KFLTKAELDGT 535
              + A++  T
Sbjct: 450 CGASYAQVMQT 460

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* Length = 463

 Score =  211 bits (539), Expect = 1e-62
 Identities = 92/364 (25%), Positives = 161/364 (44%), Gaps = 35/364 (9%)

Query: 177 RELKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAV-ERRCLPE-PRNSALISADDL 234
             ++ LGI  V   A F + HTI++  + ++  + ++A   R  +P  P     I++D  
Sbjct: 100 GYVERLGITRVDGHARFVDAHTIEVEGQRLSADHIVIATGGRPIVPRLPGAELGITSDGF 159

Query: 235 FRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVY-SRRLLKHFDQEMVRILLSSLTK 293
           F L   P +  ++G   + +E+A  L   G  VT+V    RLL  FD  +   L  ++  
Sbjct: 160 FALQQQPKRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLFQFDPLLSATLAENMHA 219

Query: 294 AGVSIQC-CVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHI 352
            G+       +  +     G   V       +      F +V+ A+ +  +   L L   
Sbjct: 220 QGIETHLEFAVAALERDAQGTTLVAQDGTRLEG-----FDSVIWAVGRAPNTRDLGLEAA 274

Query: 353 GVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLY-GMQDQLM 411
           G++++    V  +    T+V  ++A+G I  G+     +A  + R + ERL+ G  ++ +
Sbjct: 275 GIEVQSNGMVPTDAYQNTNVPGVYALGDIT-GRDQLTPVAIAAGRRLAERLFDGQSERKL 333

Query: 412 DYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLV 471
           DY  +P VV        VG+SE  A +  G D L +Y++S+        P+         
Sbjct: 334 DYDNIPTVVFAHPPLSKVGLSEPEARERLG-DVLTVYETSFT-------PM--------- 376

Query: 472 CLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAE 531
                   L  H  G    +KLVC    +RV+G+HVIG     M+ G+++A++   TKA+
Sbjct: 377 -----RYALNEH--GPKTAMKLVCAGPEQRVVGVHVIGDGADEMLQGFAVAVKMGATKAD 429

Query: 532 LDGT 535
            D T
Sbjct: 430 FDNT 433

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* Length = 598

 Score =  214 bits (546), Expect = 2e-62
 Identities = 107/376 (28%), Positives = 175/376 (46%), Gaps = 39/376 (10%)

Query: 177 RELKALGIDIVRTAAAFTNPHTIKLSN-----RSVTGFNFLLAV-ERRCLPE-PRNSAL- 228
             L+   +  +       +PH +++++      ++TG   +LA  ER   PE P      
Sbjct: 214 VALRDNQVTYLNAKGRLISPHEVQITDKNQKVSTITGNKIILATGERPKYPEIPGAVEYG 273

Query: 229 ISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILL 288
           I++DDLF L  +PGKTLV+G S +A+E A  L  LG  VT++    LL+ FDQ+M   + 
Sbjct: 274 ITSDDLFSLPYFPGKTLVIGASYVALECAGFLASLGGDVTVMVRSILLRGFDQQMAEKVG 333

Query: 289 SSLTKAGVSIQCCVIEKVISSFDGMKGVRG--------FHPESKEPFADVFKTVVNAMEK 340
             +   GV      +   I     +              H    + F + F+TV+ A+ +
Sbjct: 334 DYMENHGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGR 393

Query: 341 KFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLII 400
           +   + +    +GV + K   VVC + +QT+V N++A+G I  GKP    +A  + R + 
Sbjct: 394 EPQLSKVLCETVGVKLDKNGRVVCTDDEQTTVSNVYAIGDINAGKPQLTPVAIQAGRYLA 453

Query: 401 ERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSY-PTFDNLL 459
            RL+    +L DYS +   V   +E+G  G+SEE A + YG   + +Y S++ P    + 
Sbjct: 454 RRLFAGATELTDYSNVATTVFTPLEYGACGLSEEDAIEKYGDKDIEVYHSNFKPLEWTVA 513

Query: 460 DPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGY 519
                  ++KLVC K                          RVLG+HV+G N   +  GY
Sbjct: 514 HREDNVCYMKLVCRKSDN----------------------MRVLGLHVLGPNAGEITQGY 551

Query: 520 SLALRKFLTKAELDGT 535
           ++A++   TKA+ D T
Sbjct: 552 AVAIKMGATKADFDRT 567

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} Length = 463

 Score =  210 bits (536), Expect = 4e-62
 Identities = 92/366 (25%), Positives = 160/366 (43%), Gaps = 38/366 (10%)

Query: 177 RELKALGIDIVRTAAAFTNPHTIKL--SNRSVTGFNFLLAV-ERRCLPE--PRNSALISA 231
           + L   G +I+ T A    P+T+KL  S ++VT    ++AV       +  P +   I++
Sbjct: 101 KGLANAGAEILDTRAELAGPNTVKLLASGKTVTAERIVIAVGGHPSPHDALPGHELCITS 160

Query: 232 DDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVY-SRRLLKHFDQEMVRILLSS 290
           ++ F L A P   L+ GG  +AVE A   + LGV  TL+Y  + +L  FDQ+M R L ++
Sbjct: 161 NEAFDLPALPESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEILSRFDQDMRRGLHAA 220

Query: 291 LTKAGVSIQC-CVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNL 349
           + + G+ I C  +I+ V +  DG +               V   V+ A+ +  +   L L
Sbjct: 221 MEEKGIRILCEDIIQSVSADADGRRVATTMKHGE-----IVADQVMLALGRMPNTNGLGL 275

Query: 350 HHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQDQ 409
              GV   +   ++ +   +TS   I+A+G +   +     +A   A   IE  Y     
Sbjct: 276 EAAGVRTNELGAIIVDAFSRTSTPGIYALGDVT-DRVQLTPVAIHEAMCFIETEYKNNPT 334

Query: 410 LMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVK 469
             D+  +   V    E GTVG++EE AA+ +    + +Y++ +        P+       
Sbjct: 335 SPDHDLIATAVFSQPEIGTVGITEEEAARKFQE--IEVYRAEF-------RPM------- 378

Query: 470 LVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTK 529
                  +  L      +   +KLV      +V+G H++G +   M     ++LR   TK
Sbjct: 379 -------KATLSGR--KEKTIMKLVVNAADRKVVGAHILGHDAGEMAQLLGISLRAGCTK 429

Query: 530 AELDGT 535
            + D T
Sbjct: 430 DDFDRT 435

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... Length = 478

 Score =  208 bits (532), Expect = 2e-61
 Identities = 93/372 (25%), Positives = 174/372 (46%), Gaps = 37/372 (9%)

Query: 177 RELKALGIDIVRTAAAFTNPH--TIKLSNRSVTGFNFLLAV-ERRCLPEPRN---SAL-I 229
             L    I+I+R  AAFT+    TI++S +  T  + L+A       P       ++L I
Sbjct: 116 NNLTKSHIEIIRGHAAFTSDPKPTIEVSGKKYTAPHILIATGGMPSTPHESQIPGASLGI 175

Query: 230 SADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVY-SRRLLKHFDQEMVRILL 288
           ++D  F+L   PG+++++G   +AVE+A  L+ LG   +L+    ++L+ FD  +     
Sbjct: 176 TSDGFFQLEELPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNCT 235

Query: 289 SSLTKAGVSIQC-CVIEKVISSFDGMKGVRGFHPESKEPFADV---FKTVVNAMEKKFDF 344
             L  AGV +     +++V  +  G++         + P   +      ++ A+ +  + 
Sbjct: 236 EELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNT 295

Query: 345 AALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLY 404
             L+L+ +G+    K +++ +E   T+V  I+AVG +  GK     +A  + R +  RL+
Sbjct: 296 KDLSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAVGDVC-GKALLTPVAIAAGRKLAHRLF 354

Query: 405 G-MQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLL 463
              +D  +DY+ +P VV      GTVG++E+ A   YG + +  Y +S+        P+ 
Sbjct: 355 EYKEDSKLDYNNIPTVVFSHPPIGTVGLTEDEAIHKYGIENVKTYSTSF-------TPM- 406

Query: 464 PENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLAL 523
                           +          +K+VC    E+V+GIH+ G     M+ G+++A+
Sbjct: 407 -------------YHAVTKR--KTKCVMKMVCANKEEKVVGIHMQGLGCDEMLQGFAVAV 451

Query: 524 RKFLTKAELDGT 535
           +   TKA+ D T
Sbjct: 452 KMGATKADFDNT 463

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} Length = 484

 Score =  206 bits (528), Expect = 8e-61
 Identities = 87/366 (23%), Positives = 157/366 (42%), Gaps = 39/366 (10%)

Query: 177 RELKALGIDIVRTAAAFTNPHTIKLSN--RSVTGFNFLLAV-ER-RCLPEPRNSAL-ISA 231
             L+   + I  + A F + HT++LS     ++    L+A   +       + S L +++
Sbjct: 122 EGLQNSNVHIYESRAVFVDEHTLELSVTGERISAEKILIATGAKIVSNSAIKGSDLCLTS 181

Query: 232 DDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVY-SRRLLKHFDQEMVRILLSS 290
           +++F L   P   +++GG  + VE A   + LGV  TL++    +L++FD ++ ++L  +
Sbjct: 182 NEIFDLEKLPKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLILRNFDYDLRQLLNDA 241

Query: 291 LTKAGVSIQC-CVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNL 349
           +   G+SI     + +V S+ +           + +        V+ A  +  +   L L
Sbjct: 242 MVAKGISIIYEATVSQVQSTENCYN----VVLTNGQTI--CADRVMLATGRVPNTTGLGL 295

Query: 350 HHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQDQ 409
              GV + +   VV +EK  T+V +I+AVG +  G      +A   A   ++  +     
Sbjct: 296 ERAGVKVNEFGAVVVDEKMTTNVSHIWAVGDVT-GHIQLTPVAIHDAMCFVKNAFENTST 354

Query: 410 LMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVK 469
             DY  +   V    E GTVG+SEE A   Y    + IY++ +        P+       
Sbjct: 355 TPDYDLITTAVFSQPEIGTVGLSEEDALHRYKR--VEIYRTVF-------RPM------- 398

Query: 470 LVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTK 529
                    VL      +  F+KLV       V+G HV+G+N   +     ++L+  LTK
Sbjct: 399 -------RNVLSGS--PEKMFMKLVVDGESRIVVGAHVLGENAGEIAQLIGISLKGKLTK 449

Query: 530 AELDGT 535
              D T
Sbjct: 450 DIFDKT 455

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} Length = 479

 Score =  206 bits (528), Expect = 9e-61
 Identities = 78/379 (20%), Positives = 157/379 (41%), Gaps = 55/379 (14%)

Query: 177 RELKALGIDIVRTAAAFTNPHTIKLSN-----RSVTGFNFLLAV-ERRCLPE--PRNSAL 228
           + L+   +D+V   A F     +++          +  + L+A   +   PE  P     
Sbjct: 113 KNLEKEKVDVVFGWARFNKDGNVEVQKRDNTTEVYSANHILVATGGKAIFPENIPGFELG 172

Query: 229 ISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVY-SRRLLKHFDQEMVRIL 287
             +D  FRL   P K +V+G   + +E+A   + LG    LV     +L+ FD+ +   +
Sbjct: 173 TDSDGFFRLEEQPKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVLRKFDECIQNTI 232

Query: 288 LSSLTKAGVSIQC-CVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFA- 345
                K G+++     I KV  + +        H    +   D    ++        +  
Sbjct: 233 TDHYVKEGINVHKLSKIVKVEKNVET--DKLKIHMNDSKSI-DDVDELI--------WTI 281

Query: 346 ------ALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLI 399
                  +   ++G+ +     ++ +E   T+V NI+++G +V GK     +A  + R +
Sbjct: 282 GRKSHLGMGSENVGIKLNSHDQIIADEYQNTNVPNIYSLGDVV-GKVELTPVAIAAGRKL 340

Query: 400 IERLYG---MQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFD 456
             RL+G    ++  +DY  +P V+    E G++G+SE+ A + YG + + +Y S +    
Sbjct: 341 SNRLFGPEKFRNDKLDYENVPSVIFSHPEAGSIGISEKEAIEKYGKENIKVYNSKFT--- 397

Query: 457 NLLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMI 516
                +                 +           K+VC    E+V+G+H++G + A ++
Sbjct: 398 ----AM--------------YYAMLSE--KSPTRYKIVCAGPNEKVVGLHIVGDSSAEIL 437

Query: 517 FGYSLALRKFLTKAELDGT 535
            G+ +A++   TKA+ D  
Sbjct: 438 QGFGVAIKMGATKADFDNC 456

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* Length = 490

 Score =  197 bits (504), Expect = 3e-57
 Identities = 71/372 (19%), Positives = 140/372 (37%), Gaps = 46/372 (12%)

Query: 180 KALGIDIVRTAAAFTNPHTIKL---------SNRSVTGFNFLLAV-ERRCLPE-PRNSAL 228
              G+   +   A  + HT+ +            ++     LLA            +   
Sbjct: 115 DTEGLTFHQGFGALQDNHTVLVRESADPNSAVLETLDTEYILLATGSWPQHLGIEGDDLC 174

Query: 229 ISADDLFRLGAWPGKTLVLGGSLMAVEIA---ATLNFLGVPVTLVY-SRRLLKHFDQEMV 284
           I++++ F L   P + L +GG  +++E A         G  V L Y    +L+ FD E+ 
Sbjct: 175 ITSNEAFYLDEAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELR 234

Query: 285 RILLSSLTKAGVSIQC-CVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFD 343
           + L   L   G++++      KV  + DG + V        +     +  V+ A+ +   
Sbjct: 235 KQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEAD-----YDVVMLAIGRVPR 289

Query: 344 FAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERL 403
              L L   GV++ K   +  +   +T+V NI+A+G +   +     +A       ++ +
Sbjct: 290 SQTLQLEKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDVT-DRVMLTPVAINEGAAFVDTV 348

Query: 404 YGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLL 463
           +  + +  D++ +   V      G  G  EE AAK Y    + +Y+SS+        PL 
Sbjct: 349 FANKPRATDHTKVACAVFSIPPMGVCGYVEEDAAKKYDQ--VAVYESSFT-------PL- 398

Query: 464 PENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLAL 523
                         +            V++V       VLG+H++G +   +I   ++ L
Sbjct: 399 -----MHNISGSTYKKF---------MVRIVTNHADGEVLGVHMLGDSSPEIIQSVAICL 444

Query: 524 RKFLTKAELDGT 535
           +     ++   T
Sbjct: 445 KMGAKISDFYNT 456

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* Length = 495

 Score =  196 bits (500), Expect = 1e-56
 Identities = 79/372 (21%), Positives = 144/372 (38%), Gaps = 46/372 (12%)

Query: 180 KALGIDIVRTAAAFTNPHTIKLSN---------RSVTGFNFLLAV-ERRCLPEPRNSAL- 228
              G+D      +  + + + +             +   + LLA      +P        
Sbjct: 119 DTEGLDFFLGWGSLESKNVVVVRETADPKSAVKERLQADHILLATGSWPQMPAIPGIEHC 178

Query: 229 ISADDLFRLGAWPGKTLVLGGSLMAVEIA---ATLNFLGVPVTLVY-SRRLLKHFDQEMV 284
           IS+++ F L   P + L +GG  ++VE A         G  VTL Y +  +L+ FD+ + 
Sbjct: 179 ISSNEAFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLILRGFDETIR 238

Query: 285 RILLSSLTKAGVSIQC-CVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFD 343
             +   LT  G+ I       KV  + DG K V     ++ +        V+ A+ +   
Sbjct: 239 EEVTKQLTANGIEIMTNENPAKVSLNTDGSKHVTFESGKTLD-----VDVVMMAIGRIPR 293

Query: 344 FAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERL 403
              L L ++GV +  K  V  +E  +T+V NI+A+G I   +     +A      +++ +
Sbjct: 294 TNDLQLGNVGVKLTPKGGVQVDEFSRTNVPNIYAIGDIT-DRLMLTPVAINEGAALVDTV 352

Query: 404 YGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLL 463
           +G + +  D++ +   V      GT G+ EE AAK +    + +Y SS+        PL 
Sbjct: 353 FGNKPRKTDHTRVASAVFSIPPIGTCGLIEEVAAKEFEK--VAVYMSSFT-------PL- 402

Query: 464 PENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLAL 523
                           +      +    K+V       VLG+H++G     +I    + L
Sbjct: 403 -------------MHNISGSK-YKKFVAKIVTNHSDGTVLGVHLLGDGAPEIIQAVGVCL 448

Query: 524 RKFLTKAELDGT 535
           R     ++   T
Sbjct: 449 RLNAKISDFYNT 460

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 500

 Score =  177 bits (452), Expect = 9e-50
 Identities = 88/408 (21%), Positives = 166/408 (40%), Gaps = 76/408 (18%)

Query: 179 LKALGIDIVRTAAAFTNPHTIKLS--------------NRSVTGFNFLLAV--ERRCLPE 222
           L    +D+    A+F + + I +                  + G N L+AV  +    P 
Sbjct: 99  LSKDKVDLYEGTASFLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVFPPV 158

Query: 223 PRNSALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVY-SRRLLKHFDQ 281
                 IS+D+ F +     K  ++G   +AVE+   +  LG+   +     R+L+ FD+
Sbjct: 159 KGIENTISSDEFFNIKE-SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRKFDE 217

Query: 282 EMVRILLSSLTKAGVSIQC-CVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEK 340
            ++ +L + + K  ++I     + ++    D    +   H      +   F  V+  + +
Sbjct: 218 SVINVLENDMKKNNINIVTFADVVEIKKVSDKNLSI---HLSDGRIYEH-FDHVIYCVGR 273

Query: 341 KFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVG--------------------- 379
             D   L L  + V+     Y+V +E  +TSV NI+AVG                     
Sbjct: 274 SPDTENLKLEKLNVETNNN-YIVVDENQRTSVNNIYAVGDCCMVKKSKEIEDLNLLKLYN 332

Query: 380 ------------GIVHGKPNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFG 427
                         +        +A  + RL+ +RL+  + +  +Y  +P V+      G
Sbjct: 333 EERYLNKKENVTEDIFYNVQLTPVAINAGRLLADRLFLKKTRKTNYKLIPTVIFSHPPIG 392

Query: 428 TVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQ 487
           T+G+SEEAA ++YG + + IY+S +      +  + PE                     +
Sbjct: 393 TIGLSEEAAIQIYGKENVKIYESKFTNLFFSVYDIEPEL-------------------KE 433

Query: 488 NNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT 535
             ++KLVC+   E + G+H+IG N   ++ G+++AL+   TK + D T
Sbjct: 434 KTYLKLVCVGKDELIKGLHIIGLNADEIVQGFAVALKMNATKKDFDET 481

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* Length = 523

 Score =  127 bits (320), Expect = 1e-31
 Identities = 78/384 (20%), Positives = 127/384 (33%), Gaps = 53/384 (13%)

Query: 176 MRELKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAV--ERRCLPEP---RNSALIS 230
             + +     I+   A   + HT++ + +     N +LAV      L  P          
Sbjct: 143 QSKEQLNLEYILNCPAKVIDNHTVEAAGKVFKAKNLILAVGAGPGTLDVPGVNAKGVFDH 202

Query: 231 ADDLFRLGAWPGKTL-VLGGSLMAVEIAATLNFLGVPVTLV-YSRRLLKHFDQEMVRILL 288
           A  +  L   PG T+ V+GGS  AVE     N  G    ++  +  L    D E    +L
Sbjct: 203 ATLVEELDYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLIKDNETRAYVL 262

Query: 289 SSLTKAGVSIQC-CVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAAL 347
             + + G+ I     + ++    +G                     +    E + +   +
Sbjct: 263 DRMKEQGMEIISGSNVTRIEEDANGRV--------------QAVVAMTPNGEMRIETDFV 308

Query: 348 -----------NL-HHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAIS 395
                       L   +G+D+  K  V+ NE  QTSV N++AVG ++ G P     A  S
Sbjct: 309 FLGLGEQPRSAELAKILGLDLGPKGEVLVNEYLQTSVPNVYAVGDLIGG-PMEMFKARKS 367

Query: 396 ARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTF 455
                  + G +         P  +    E   +GM EE A     A G  I     P  
Sbjct: 368 GCYAARNVMG-EKISYTPKNYPDFLHTHYEVSFLGMGEEEAR----AAGHEIVTIKMPPD 422

Query: 456 DNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNN----FVKLVCLKGGERVLGIHVIGQN 511
                          V L   +R +             F K+V      +VLG H +G  
Sbjct: 423 ---------TENGLNVALPASDRTMLYAFGKGTAHMSGFQKIVIDAKTRKVLGAHHVGYG 473

Query: 512 VAGMIFGYSLALRKFLTKAELDGT 535
                   ++ +++ LT  EL   
Sbjct: 474 AKDAFQYLNVLIKQGLTVDELGDM 497

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* Length = 467

 Score =  114 bits (288), Expect = 1e-27
 Identities = 71/321 (22%), Positives = 125/321 (38%), Gaps = 25/321 (7%)

Query: 180 KALGIDIVRTAAAFTNPHTIKL-----SNRSVTGFNFLLAV--ERRCLPEP--RNSALIS 230
               I +V   A F +  ++ +       R V     L+A        P P  + S   +
Sbjct: 106 GNPAITVVHGEARFKDDQSLTVRLNEGGERVVMFDRCLVATGASPAVPPIPGLKESPYWT 165

Query: 231 ADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILLSS 290
           + +       P +  V+G S++A+E+A     LG  VT++    L    D  +   + ++
Sbjct: 166 STEALASDTIPERLAVIGSSVVALELAQAFARLGSKVTVLARNTLFFREDPAIGEAVTAA 225

Query: 291 LTKAGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLH 350
               G+ +   +     S    M G         E  AD    ++ A  +  +  +L L 
Sbjct: 226 FRAEGIEV---LEHTQASQVAHMDGEFVLTTTHGELRADK---LLVATGRTPNTRSLALD 279

Query: 351 HIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQDQL 410
             GV +  +  +V ++  +TS  NI+A G     +P    +AA +       + G  D  
Sbjct: 280 AAGVTVNAQGAIVIDQGMRTSNPNIYAAGDCT-DQPQFVYVAAAAGTRAAINMTG-GDAA 337

Query: 411 MDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNL---LDPLLPENF 467
           +D + +P VV  D +  TVG SE  A      DG+     +    DN+   L       F
Sbjct: 338 LDLTAMPAVVFTDPQVATVGYSEAEAH----HDGIETDSRTLT-LDNVPRALANFDTRGF 392

Query: 468 VKLVCLKGGERVLGIHVIGQN 488
           +KLV  +G  R++G+  +   
Sbjct: 393 IKLVIEEGSHRLIGVQAVAPE 413

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 Length = 499

 Score =  101 bits (253), Expect = 6e-23
 Identities = 67/371 (18%), Positives = 126/371 (33%), Gaps = 49/371 (13%)

Query: 179 LKALGIDIVRTAAAFTNPHTIKLSNR-----------SVTGFNFLLAV--ERRCLP--EP 223
           L ++G+ ++       +       +R                  L+A     R LP  +P
Sbjct: 105 LLSMGVQVIAGRGELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPRILPSAQP 164

Query: 224 RNSALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLV-YSRRLLKHFDQE 282
               +++   L+ L A P   +V+G  +   E       LGVPVT+V     +L + D +
Sbjct: 165 DGERILTWRQLYDLDALPDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVLPYEDAD 224

Query: 283 MVRILLSSLTKAGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPF-ADVFKTVVNAMEKK 341
              +L  S  + GV +      +  S      GV                   +  +   
Sbjct: 225 AALVLEESFAERGVRLFKNA--RAASVTRTGAGVL-VTMTDGRTVEGSH---ALMTIGSV 278

Query: 342 FDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIE 401
            + + L L  +G+ + + +Y+  +   +T    I+A G    G    AS+AA+  R+ + 
Sbjct: 279 PNTSGLGLERVGIQLGRGNYLTVDRVSRTLATGIYAAGDCT-GLLPLASVAAMQGRIAMY 337

Query: 402 RLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDP 461
              G     +    +   V    E   VG+ +        A  +       P   N    
Sbjct: 338 HALGEGVSPIRLRTVAATVFTRPEIAAVGVPQSVID----AGSVAARTIMLPLRTN---- 389

Query: 462 LLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSL 521
                           ++      G   FVK+ C +    V+G  V+    + +I   ++
Sbjct: 390 -------------ARAKMSE-MRHG---FVKIFCRRSTGVVIGGVVVAPIASELILPIAV 432

Query: 522 ALRKFLTKAEL 532
           A++  +T  EL
Sbjct: 433 AVQNRITVNEL 443

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* Length = 455

 Score = 93.7 bits (234), Expect = 1e-20
 Identities = 76/328 (23%), Positives = 139/328 (42%), Gaps = 38/328 (11%)

Query: 179 LKALGIDIVRTAAAFTNPHTIKL--SNRSVTGFNFLLAV--ERRCLP--EPRNSALISAD 232
            K  GI   +  A F +   + +  +   +     L+A        P  +     ++++ 
Sbjct: 99  FKKNGIARHQGTARFLSERKVLVEETGEELEARYILIATGSAPLIPPWAQVDYERVVTST 158

Query: 233 DLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLV-YSRRLLKHFDQEMVRILLSSL 291
           +       P + +V+GG ++ +E+    + LG  V ++ Y  R+L   D E+ R      
Sbjct: 159 EALSFPEVPKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRILPTMDLEVSRAAERVF 218

Query: 292 TKAGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPF-ADVFKTVVNAMEKKFDFAALNLH 350
            K G++I+  V  +V +     KG R    E  E   AD    V+ A+ ++     L+L 
Sbjct: 219 KKQGLTIRTGV--RVTAVVPEAKGAR-VELEGGEVLEADR---VLVAVGRRPYTEGLSLE 272

Query: 351 HIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHG-----KPNNASMAAISARLIIERLYG 405
           + G+   ++  +  +E  +T V +I+A+G +V G     K   AS   I+A   +E +  
Sbjct: 273 NAGLSTDERGRIPVDEHLRTRVPHIYAIGDVVRGPMLAHK---ASEEGIAA---VEHMVR 326

Query: 406 MQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDN-----LLD 460
                +DY  +P VV    E   VG +EE   K   A G+      +P   +     + +
Sbjct: 327 -GFGHVDYQAIPSVVYTHPEIAAVGYTEE-ELK---AQGIPYKVGKFPYSASGRARAMGE 381

Query: 461 PLLPENFVKLVCLKGGERVLGIHVIGQN 488
               E F+K++     +R+LG+H IG  
Sbjct: 382 ---TEGFIKVLAHAKTDRILGVHGIGAR 406

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} Length = 492

 Score = 89.2 bits (222), Expect = 4e-19
 Identities = 63/376 (16%), Positives = 117/376 (31%), Gaps = 61/376 (16%)

Query: 180 KALGIDIVRTAAAFTNPHTIKL-SNRSVTGFNFLLAV--ERRCLP--EPRNSALISADDL 234
                D +R  A F + HT+++  +  V     ++A               S L++ D+L
Sbjct: 108 SFDEQDKIRGFAKFLDEHTLQVDDHSQVIAKRIVIATGSRPNYPEFLAAAGSRLLTNDNL 167

Query: 235 FRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLV-YSRRLLKHFDQEMVRILLSSLTK 293
           F L   P    V G  ++ +E+   L+ LGV V +   S  +    D+EM R    +  +
Sbjct: 168 FELNDLPKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVANLQDEEMKRYAEKTFNE 227

Query: 294 AGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDF--------- 344
                    +   I   D ++               V     +  +    F         
Sbjct: 228 EFYFDAKARVISTIEKEDAVE---------------VIYFDKSGQKTTESFQYVLAATGR 272

Query: 345 ----AALNLHHIGVDIKKKSYVVCNEKD-QTSVGNIFAVGGIVHGKPNNASMAAISARLI 399
                 L L +  +++ KK+  + +E   QTSV +IF  G   +        AA   ++ 
Sbjct: 273 KANVDKLGLENTSIELDKKNSPLFDELTLQTSVDHIFVAGDANNT-LTLLHEAADDGKVA 331

Query: 400 IERLYGM-QDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYK-SSYPTFDN 457
                               VV  + +  +VG+S      +Y       Y          
Sbjct: 332 GTNAGAYPVIAQGQRRAPLSVVFTEPQVASVGLSLRQIEDLYADQDAANYVVGQVSFEGQ 391

Query: 458 LLDPLLPENFVKLVCLKGGERVLGIHVIGQNN-FVKLVCLKGGERVLGIHVIGQNVAGMI 516
                            G  R     V+G+N   + +   +     LG  + G     + 
Sbjct: 392 -----------------G--RSR---VMGKNKGLLNVYADRTSGEFLGAEMFGPAAEHIG 429

Query: 517 FGYSLALRKFLTKAEL 532
              + A ++ +T   +
Sbjct: 430 HLLAWARQQQMTVQAM 445

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 458

 Score = 86.8 bits (216), Expect = 2e-18
 Identities = 69/319 (21%), Positives = 129/319 (40%), Gaps = 24/319 (7%)

Query: 179 LKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAV--ERRCLPE-PRNSALISADDLF 235
           LK  G+ +V   A   +   +++  + +   + LLA       LP  P    +IS+ +  
Sbjct: 106 LKKHGVKVVHGWAKVLDGKQVEVDGQRIQCEHLLLATGSSSVELPMLPLGGPVISSTEAL 165

Query: 236 RLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLV-YSRRLLKHFDQEMVRILLSSLTKA 294
              A P   +V+GG  + +E+      LG  V++V    R+L  +D E+   +  SL K 
Sbjct: 166 APKALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPTYDSELTAPVAESLKKL 225

Query: 295 GVSIQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGV 354
           G+++   +   V    +G               AD    V+ A+ ++      NL  + +
Sbjct: 226 GIALH--LGHSVEGYENGCLLANDGKGGQLRLEADR---VLVAVGRRPRTKGFNLECLDL 280

Query: 355 DIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQDQLMDYS 414
            +   +  + +E+ QTS+ N++A+G +    P  A  A     ++ E + G   +  + +
Sbjct: 281 KMNGAAIAI-DERCQTSMHNVWAIGDVAGE-PMLAHRAMAQGEMVAEIIAGKARR-FEPA 337

Query: 415 FLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDN-----LLDPLLPENFVK 469
            +  V   D E   VG + E A+      GL    + +P   N     L        FV+
Sbjct: 338 AIAAVCFTDPEVVVVGKTPEQAS----QQGLDCIVAQFPFAANGRAMSLESK---SGFVR 390

Query: 470 LVCLKGGERVLGIHVIGQN 488
           +V  +    +LG   +G  
Sbjct: 391 VVARRDNHLILGWQAVGVA 409

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 455

 Score = 86.0 bits (214), Expect = 3e-18
 Identities = 80/323 (24%), Positives = 147/323 (45%), Gaps = 24/323 (7%)

Query: 179 LKALGIDIVRTAAAFTNPHTIKLSN----RSVTGFNFLLAV--ERRCLPE-PRNSALISA 231
           LK   ++IV+  A F + +T+++ N    ++ T  N ++A       LP    ++ ++ +
Sbjct: 101 LKGNKVEIVKGEAYFVDANTVRVVNGDSAQTYTFKNAIIATGSRPIELPNFKFSNRILDS 160

Query: 232 DDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLV-YSRRLLKHFDQEMVRILLSS 290
                LG  P   +V+GG  + +E+       G  VT++  +  +L  F+++M  I+   
Sbjct: 161 TGALNLGEVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSGFEKQMAAIIKKR 220

Query: 291 LTKAGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLH 350
           L K GV +          + +   GV   +  + E        V+  + ++ +   L L 
Sbjct: 221 LKKKGVEVVTNA--LAKGAEEREDGVTVTYEANGETKTIDADYVLVTVGRRPNTDELGLE 278

Query: 351 HIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQDQL 410
            IG+ +  +  +  +++ +TSV NIFA+G IV G P  A  A+   ++  E + G     
Sbjct: 279 QIGIKMTNRGLIEVDQQCRTSVPNIFAIGDIVPG-PALAHKASYEGKVAAEAIAGHPSA- 336

Query: 411 MDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDN-----LLDPLLPE 465
           +DY  +P VV  D E  +VG  E+ A      +G+ +  + +P   N     L D    +
Sbjct: 337 VDYVAIPAVVFSDPECASVGYFEQQAK----DEGIDVIAAKFPFAANGRALALND---TD 389

Query: 466 NFVKLVCLKGGERVLGIHVIGQN 488
            F+KLV  K    ++G  +IG N
Sbjct: 390 GFLKLVVRKEDGVIIGAQIIGPN 412

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* Length = 476

 Score = 85.3 bits (212), Expect = 6e-18
 Identities = 72/333 (21%), Positives = 140/333 (42%), Gaps = 42/333 (12%)

Query: 179 LKALGIDIVRTAAAFTNPHTIKL-----SNRSVTGFNFLLAV--ERRCLP-----EPRNS 226
           +KA G+ +            +++     S++ +   N +LA   +   +P     +    
Sbjct: 109 IKANGVTLFEGHGKLLAGKKVEVTAADGSSQVLDTENVILASGSKPVEIPPAPVDQDV-- 166

Query: 227 ALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLV-YSRRLLKHFDQEMVR 285
            ++ +         PGK  V+G  ++ +E+ +    LG  VT++    + L   D+++ +
Sbjct: 167 -IVDSTGALDFQNVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPAVDEQVAK 225

Query: 286 ILLSSLTKAGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFA 345
                LTK G+ I      +V  +    K V     +++   +  F  ++ A+ ++    
Sbjct: 226 EAQKILTKQGLKILLGA--RVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVGRRPVTT 283

Query: 346 ALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHG-----KPNNASMAAISARLII 400
            L     GV + ++ ++  ++   TSV  ++A+G +V G     K   AS   +      
Sbjct: 284 DLLAADSGVTLDERGFIYVDDYCATSVPGVYAIGDVVRGAMLAHK---ASEEGVVV---A 337

Query: 401 ERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDN--- 457
           ER+ G     M+Y  +P V+    E   VG +E+ A K   A+G+ I    +P   +   
Sbjct: 338 ERIAG-HKAQMNYDLIPAVIYTHPEIAGVGKTEQ-ALK---AEGVAINVGVFPFAASGRA 392

Query: 458 --LLDPLLPENFVKLVCLKGGERVLGIHVIGQN 488
               D      FVK++     +RVLG+HVIG +
Sbjct: 393 MAAND---TAGFVKVIADAKTDRVLGVHVIGPS 422

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* Length = 464

 Score = 84.1 bits (209), Expect = 1e-17
 Identities = 79/373 (21%), Positives = 144/373 (38%), Gaps = 56/373 (15%)

Query: 179 LKALGIDIVRTAAAFTNPHTIKL-----SNRSVTGFNFLLAV--ERRCLPE-PRNSALIS 230
           +K   I  +     F + +T+ +        SVT  N ++A     R +P    ++ +++
Sbjct: 101 MKKNKITEIHGYGTFADANTLLVDLNDGGTESVTFDNAIIATGSSTRLVPGTSLSANVVT 160

Query: 231 ADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLV-YSRRLLKHFDQEMVRILLS 289
            ++       P   ++ G   + +E    L   GV VT+V +  R L + D ++ + +  
Sbjct: 161 YEEQILSRELPKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRALPNEDADVSKEIEK 220

Query: 290 SLTKAGVSIQCCVIEKVISSFDGMKGVRGFHPESK---EPF-ADVFKTVVNAMEKKFDFA 345
              K GV+I      KV S  DG   V           +   A+    V+ A+    +  
Sbjct: 221 QFKKLGVTILTAT--KVESIADGGSQVT-VTVTKDGVAQELKAEK---VLQAIGFAPNVE 274

Query: 346 ALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHG-----KPNNASMAAISARLII 400
              L   GV +  +  +  ++  +T+VG+I+A+G +            A    + A    
Sbjct: 275 GYGLDKAGVALTDRKAIGVDDYMRTNVGHIYAIGDVNGLLQLAHV---AEAQGVVA---A 328

Query: 401 ERLYGMQDQ-LMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLL 459
           E + G +   L D+  LP          + G++E+ A      +G  +  + +P   N  
Sbjct: 329 ETIAGAETLTLGDHRMLPRATFCQPNVASFGLTEQQAR----NEGYDVVVAKFPFTAN-- 382

Query: 460 DPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGY 519
                               +G    G   FVKLV       +LG H++G +VA ++   
Sbjct: 383 ---------------AKAHGVG-DPSG---FVKLVADAKHGELLGGHLVGHDVAELLPEL 423

Query: 520 SLALRKFLTKAEL 532
           +LA R  LT +EL
Sbjct: 424 TLAQRWDLTASEL 436

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 470

 Score = 84.1 bits (209), Expect = 2e-17
 Identities = 80/340 (23%), Positives = 145/340 (42%), Gaps = 54/340 (15%)

Query: 179 LKALGIDIVRTAAAFTNPHTIKL-----SNRSVTGFNFLLAV--ERRCLP--EPRNSALI 229
            K   +  V+    F +P  I +      N  V G + ++A   + + LP        ++
Sbjct: 106 FKKNKVTYVKGYGKFVSPSEISVDTIEGENTVVKGKHIIIATGSDVKSLPGVTIDEKKIV 165

Query: 230 SADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLV-YSRRLLKHFDQEMVRILL 288
           S+     L   P K +V+G   + +E+ +    +G  VT+V ++  ++   D E+ +   
Sbjct: 166 SSTGALALSEIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPTMDAEIRKQFQ 225

Query: 289 SSLTKAGVSIQC-CVIEKVISSFDG----MKGVRGFHPESKEPFADVFKTVVNAMEKKFD 343
            SL K G+  +    +  V +S DG    ++   G      E  ADV   V+ +  +   
Sbjct: 226 RSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIE--ADV---VLVSAGRTPF 280

Query: 344 FAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHG-----KPNNASMAAISARL 398
            + LNL  IGV+  K   ++ NE+  T+V  ++A+G ++ G     K   A    ++   
Sbjct: 281 TSGLNLDKIGVETDKLGRILVNERFSTNVSGVYAIGDVIPGPMLAHK---AEEDGVAC-- 335

Query: 399 IIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNL 458
            +E L G     +DY  +P VV  + E  +VG +EE   K  G +    Y+     F   
Sbjct: 336 -VEYLAGKVGH-VDYDKVPGVVYTNPEVASVGKTEE-QVKETGVE----YRVG--KF--- 383

Query: 459 LDPLL----------PENFVKLVCLKGGERVLGIHVIGQN 488
             P +           E  VK++  K  +++LG+H++  N
Sbjct: 384 --PFMANSRAKAIDNAEGLVKIIAEKETDKILGVHIMAPN 421

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} Length = 491

 Score = 83.7 bits (208), Expect = 2e-17
 Identities = 75/348 (21%), Positives = 128/348 (36%), Gaps = 68/348 (19%)

Query: 179 LKALGIDIVRTAAAFTNPHTIKL-----SNRSVTGFNFLLAV--ERRCLP-------EPR 224
            K   ID  +          + +       + +   N ++A   +   +P       E  
Sbjct: 125 FKKNKIDGFQGTGKVLGQGKVSVTNEKGEEQVLEAKNVVIATGSDVAGIPGVEVAFDEKT 184

Query: 225 NSALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLV-YSRRLLKHFDQEM 283
              ++S+     L   P   +V+GG ++ +E+ +    LG  VT+V +   +L   D E+
Sbjct: 185 ---IVSSTGALALEKVPASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTILGGMDGEV 241

Query: 284 VRILLSSLTKAGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFD 343
            + L   LTK G+  +     KV  +     G +             F+ V        D
Sbjct: 242 AKQLQRMLTKQGIDFKLGA--KVTGAVKSGDGAKV-----------TFEPVKGGEATTLD 288

Query: 344 F-------------AALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHG-----K 385
                           L L   GV +  +  V  +   QTS+  ++A+G +V G     K
Sbjct: 289 AEVVLIATGRKPSTDGLGLAKAGVVLDSRGRVEIDRHFQTSIAGVYAIGDVVRGPMLAHK 348

Query: 386 PNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGL 445
              A    ++     E + G     ++Y  +P VV    E  +VG +EE   K   A G+
Sbjct: 349 ---AEDEGVAV---AEIIAGQAGH-VNYDVIPGVVYTQPEVASVGKTEE-ELK---AAGV 397

Query: 446 VIYKSSYPTFDN-----LLDPLLPENFVKLVCLKGGERVLGIHVIGQN 488
                 +P   N     +L     + FVK++  K  +RVLG H+IG  
Sbjct: 398 AYKIGKFPFTANGRARAMLQ---TDGFVKILADKETDRVLGGHIIGFG 442

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* Length = 474

 Score = 81.4 bits (202), Expect = 1e-16
 Identities = 71/348 (20%), Positives = 120/348 (34%), Gaps = 68/348 (19%)

Query: 179 LKALGIDIVRTAAAFTNPHTIKL-----SNRSVTGFNFLLAV--ERRCLP-----EPRNS 226
            K   +  V      T  + +         + +   N L+A   E    P     E    
Sbjct: 107 FKQNKVVHVNGYGKITGKNQVTATKADGGTQVIDTKNILIATGSEVTPFPGITIDEDT-- 164

Query: 227 ALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLV-YSRRLL-KHFDQEMV 284
            ++S+     L   P K +V+G  ++ VE+ +    LG  VT V +   +     D E+ 
Sbjct: 165 -IVSSTGALSLKKVPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEIS 223

Query: 285 RILLSSLTKAGVSIQCCV-IEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFD 343
           +     L K G   +    +       DG   V               +       +   
Sbjct: 224 KNFQRILQKQGFKFKLNTKVTGATKKSDGKIDV-------------SIEAASGGKAEVIT 270

Query: 344 F-------------AALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHG-----K 385
                           L L  +G+++  +  +  N + QT + NI+A+G +V G     K
Sbjct: 271 CDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQTKIPNIYAIGDVVAGPMLAHK 330

Query: 386 PNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGL 445
              A    I     +E + G     +DY+ +P V+    E   VG SEE   K    +G+
Sbjct: 331 ---AEDEGIIC---VEGMAG-GAVHIDYNCVPSVIYTHPEVAWVGKSEE-QLK---EEGI 379

Query: 446 VIYKSSYPTFDN-----LLDPLLPENFVKLVCLKGGERVLGIHVIGQN 488
                 +P   N       D    +  VK++  K  +RVLG H++G  
Sbjct: 380 EYKVGKFPFAANSRAKTNAD---TDGMVKILGQKSTDRVLGAHILGPG 424

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* Length = 464

 Score = 80.6 bits (200), Expect = 2e-16
 Identities = 75/333 (22%), Positives = 132/333 (39%), Gaps = 46/333 (13%)

Query: 179 LKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAV--ERRCLPE-PRNSALISADDLF 235
           LK  G++++R  A    P  +++        + +LA   E   L   P    +  +    
Sbjct: 103 LKGNGVELLRGFARLVGPKEVEVGGERYGAKSLILATGSEPLELKGFPFGEDVWDSTRAL 162

Query: 236 RLGAW-PGKTLVLGGSLMAVEIAATLNFLGVPVTLV-YSRRLLKHFDQEMVRILLSSLTK 293
           ++    P + LV+GG  + +E+      LG  VTL+ Y   +L   D E   +L  +L K
Sbjct: 163 KVEEGLPKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILPQGDPETAALLRRALEK 222

Query: 294 AGVSIQCCV----IEK----VISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFA 345
            G+ ++        EK    +    +  +G      E +E   D    V+ A+ +K    
Sbjct: 223 EGIRVRTKTKAVGYEKKKDGLHVRLEPAEG-----GEGEEVVVDK---VLVAVGRKPRTE 274

Query: 346 ALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHG-----KPNNASMAAISARLII 400
            L L   GV + ++ ++  N + +TSV  ++A+G          K   A    + A    
Sbjct: 275 GLGLEKAGVKVDERGFIRVNARMETSVPGVYAIGDAARPPLLAHK---AMREGLIA---A 328

Query: 401 ERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDN--- 457
           E   G      DY  +P VV    E+  VG++EE A       G  +    +P   +   
Sbjct: 329 ENAAGKDSA-FDYQ-VPSVVYTSPEWAGVGLTEEEAK----RAGYKVKVGKFPLAASGRA 382

Query: 458 --LLDPLLPENFVKLVCLKGGERVLGIHVIGQN 488
             L      E  VK+V  +  + +LG+ ++G  
Sbjct: 383 LTLGG---AEGMVKVVGDEETDLLLGVFIVGPQ 412

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* Length = 482

 Score = 79.5 bits (197), Expect = 5e-16
 Identities = 66/347 (19%), Positives = 132/347 (38%), Gaps = 60/347 (17%)

Query: 179 LKALGIDIVRTAAAFTNPHTIKL---------------SNRSVTGFNFLLAV--ERRCLP 221
            K+  +D+++    F +PH +++                 + V   N ++A       LP
Sbjct: 105 AKSRKVDVIQGDGQFLDPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRVTKLP 164

Query: 222 E-PRNSALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLV-YSRRLLKHF 279
             P +  +I +     L   PGK L++GG ++ +E+    + LG  + +V     L++  
Sbjct: 165 FIPEDPRIIDSSGALALKEVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQGA 224

Query: 280 DQEMVRILLSSLTKAGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAME 339
           D+++V++          +I      K ++      GV             V     NA +
Sbjct: 225 DRDLVKVWQKQNEYRFDNIMVNT--KTVAVEPKEDGVY------------VTFEGANAPK 270

Query: 340 KKFDF-------------AALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKP 386
           +   +               ++    GV +  + ++  +++ +T+V +I+A+G IV   P
Sbjct: 271 EPQRYDAVLVAAGRAPNGKLISAEKAGVAVTDRGFIEVDKQMRTNVPHIYAIGDIVGQ-P 329

Query: 387 NNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLV 446
             A  A     +  E   G +    D   +P V     E   VG +E +A     A    
Sbjct: 330 MLAHKAVHEGHVAAENCAGHKAY-FDARVIPGVAYTSPEVAWVGETELSAK----ASARK 384

Query: 447 IYKSSYPTFDN-----LLDPLLPENFVKLVCLKGGERVLGIHVIGQN 488
           I K+++P   +            + F KL+      R++G  ++G N
Sbjct: 385 ITKANFPWAASGRAIANGC---DKPFTKLIFDAETGRIIGGGIVGPN 428

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} Length = 468

 Score = 79.5 bits (197), Expect = 5e-16
 Identities = 66/342 (19%), Positives = 128/342 (37%), Gaps = 57/342 (16%)

Query: 179 LKALGIDIVRTAAAFTNPHTIKL-----SNRSVTGFNFLLAV--ERRCLP-----EPRNS 226
            K   +   +   +F   H+I++         +     ++A   E   LP     E    
Sbjct: 103 FKKNKVTYYKGEGSFETAHSIRVNGLDGKQEMLETKKTIIATGSEPTELPFLPFDEKV-- 160

Query: 227 ALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLV-YSRRLLKHFDQEMVR 285
            ++S+     L   P   +V+GG ++ +E+ +    LG  VT+V ++ R     D+++  
Sbjct: 161 -VLSSTGALALPRVPKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAPTLDEDVTN 219

Query: 286 ILLSSLTKA-GVSIQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDF 344
            L+ +L K   +        KV+   +    V             +     N   +    
Sbjct: 220 ALVGALAKNEKMKFMTST--KVVGGTNNGDSVS------------LEVEGKNGKRETVTC 265

Query: 345 -------------AALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASM 391
                          L L  I V   ++ +V   +  +TS+ +++A+G +V   P  A  
Sbjct: 266 EALLVSVGRRPFTGGLGLDKINVAKNERGFVKIGDHFETSIPDVYAIGDVVDKGPMLAHK 325

Query: 392 AAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSS 451
           A        E L G +   ++Y  +P V+    E  +VG SE+   K    +G+      
Sbjct: 326 AEDEGVACAEILAG-KPGHVNYGVIPAVIYTMPEVASVGKSED-ELK---KEGVAYKVGK 380

Query: 452 YPTFDN-----LLDPLLPENFVKLVCLKGGERVLGIHVIGQN 488
           +P   N     +      + FVK++  K  +R+LG+H++   
Sbjct: 381 FPFNANSRAKAVST---EDGFVKVLVDKATDRILGVHIVCTT 419

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* Length = 478

 Score = 79.5 bits (197), Expect = 6e-16
 Identities = 67/353 (18%), Positives = 129/353 (36%), Gaps = 72/353 (20%)

Query: 179 LKALGIDIVRTAAAFTNPHTIK-----------LSNRSVTGFNFLLAV--ERRCLP---- 221
            K   +   +   +F +   I+             +  +   N ++A   E    P    
Sbjct: 106 FKKNKVTYYKGNGSFEDETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVTPFPGIEI 165

Query: 222 -EPRNSALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLV-YSRRLLKHF 279
            E +   ++S+     L   P +  ++GG ++ +E+ +  + LG  VT+V +  ++    
Sbjct: 166 DEEK---IVSSTGALSLKEIPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGASM 222

Query: 280 DQEMVRILLSSLTKAGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPFADV-FKTVVNAM 338
           D E+ +     L K G+  +              K V        +   ++  +      
Sbjct: 223 DGEVAKATQKFLKKQGLDFKL-----------STK-VISAKRNDDKNVVEIVVEDTKTNK 270

Query: 339 EKKFDF-------------AALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHG- 384
           ++  +              A L    IG+++ K+  +V +++  +   +I  VG +  G 
Sbjct: 271 QENLEAEVLLVAVGRRPYIAGLGAEKIGLEVDKRGRLVIDDQFNSKFPHIKVVGDVTFGP 330

Query: 385 ----KPNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVY 440
               K   A    I+A   +E L       ++Y+ +P V+    E   VG +EE   K  
Sbjct: 331 MLAHK---AEEEGIAA---VEMLKT-GHGHVNYNNIPSVMYSHPEVAWVGKTEE-QLK-- 380

Query: 441 GADGLVIYKSSYPTFDN-----LLDPLLPENFVKLVCLKGGERVLGIHVIGQN 488
              G+      +P   N       D    E FVK++     ER+LG H+IG N
Sbjct: 381 -EAGIDYKIGKFPFAANSRAKTNQD---TEGFVKILIDSKTERILGAHIIGPN 429

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} Length = 466

 Score = 69.9 bits (172), Expect = 6e-13
 Identities = 61/347 (17%), Positives = 117/347 (33%), Gaps = 67/347 (19%)

Query: 179 LKALGIDIVRTAAAFTNPHTIKL-----SNRSVTGFNFLLAV--ERRCLPEP-------R 224
            +   +   +      +P  + +               ++A   E   L  P        
Sbjct: 99  SQYETLTFYKGYVKIKDPTHVIVKTDEGKEIEAETRYMIIASGAETAKLRLPGVEYCLTS 158

Query: 225 NSALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLV-YSRRLLKHF-DQE 282
           +          +L   P   +++G   + +EIA+    +GV   ++    R L    DQ+
Sbjct: 159 DDIFGYKTSFRKL---PQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALITLEDQD 215

Query: 283 MVRILLSSL-----TKAGV-SIQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVN 336
           +V  LLS L       + V  ++    ++    +    G        K  F +    VV 
Sbjct: 216 IVNTLLSILKLNIKFNSPVTEVKKIKDDEYEVIYSTKDG------SKKSIFTNS---VVL 266

Query: 337 AMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHG-----KPNNASM 391
           A  ++          IG+ I K   VV +E  +T++ N+FA G              A  
Sbjct: 267 AAGRR-PVIPEGAREIGLSISKTGIVV-DETMKTNIPNVFATGDANGLAPYYHA---AVR 321

Query: 392 AAISARLIIERLYGMQDQL--MDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYK 449
            +I+A      +      +  +D   +PV +        VG+    A +     G+ I +
Sbjct: 322 MSIAA---ANNIMANGMPVDYVDVKSIPVTIYTIPSLSYVGILPSKA-R---KMGIEIVE 374

Query: 450 SSYP--------TFDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQN 488
           + Y          +         E  +KL+  +G  R++G  +IG +
Sbjct: 375 AEYNMEEDVSAQIYGQ------KEGVLKLIFERGSMRLIGAWMIGVH 415

>1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A {Staphylococcus aureus} Length = 438

 Score = 69.4 bits (171), Expect = 7e-13
 Identities = 50/286 (17%), Positives = 102/286 (35%), Gaps = 73/286 (25%)

Query: 241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLV-YSRRLLKHFDQEMVRILLSSLTKAGVSIQ 299
             K LV+G   +++E+   L   G+  TL+  S ++ K  D +M + +L  L K  +   
Sbjct: 148 VDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPY- 206

Query: 300 CCVIEKVISSFDGMKGVR---------------GFHPESKEPFADVFKTVVNAMEKKFDF 344
              + + I++ +G +                  G HP S                    F
Sbjct: 207 --RLNEEINAINGNEITFKSGKVEHYDMIIEGVGTHPNS-------------------KF 245

Query: 345 AALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVG------GIVHGKPNN---ASMAAIS 395
                    + + +K ++  N+K +T+V NI+A+G            P +   A  A  +
Sbjct: 246 IE----SSNIKLDRKGFIPVNDKFETNVPNIYAIGDIATSHYRHVDLPASVPLAWGAHRA 301

Query: 396 ARLIIERLYGMQDQLMDYSFLPV----VVR-GDVEFGTVGMSEEAAAKVYGADGLVIYKS 450
           A ++ E++ G         F       +V+  D  F +VG+      + +    + + + 
Sbjct: 302 ASIVAEQIAGNDTI----EFKGFLGNNIVKFFDYTFASVGVKPNELKQ-FDYKMVEVTQG 356

Query: 451 S----YPTFDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVK 492
           +    YP    L         +++       ++L    +G+    K
Sbjct: 357 AHANYYPGNSPL--------HLRVYYDTSNRQILRAAAVGKEGADK 394

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* Length = 588

 Score = 69.2 bits (170), Expect = 1e-12
 Identities = 53/277 (19%), Positives = 101/277 (36%), Gaps = 51/277 (18%)

Query: 241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLV-YSRRLLKHFDQEMVRILLSSLTKAGVSIQ 299
           P    V+GG  + VE+   L   G+ VTLV  + +++   D EM   +   +    V + 
Sbjct: 187 PRHATVIGGGFIGVEMVENLRERGIEVTLVEMANQVMPPIDYEMAAYVHEHMKNHDVEL- 245

Query: 300 CCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAM----EKKFDFAALNLHHIGVD 355
             V E  + + +    V      S     D+   ++ A+    E             G+ 
Sbjct: 246 --VFEDGVDALEENGAVVRLKSGSVIQ-TDM---LILAIGVQPESSL------AKGAGLA 293

Query: 356 IKKKSYVVCNEKDQTSVGNIFAVG------GIVHGKPNN---ASMAAISARLIIERLYGM 406
           +  +  +  NEK QTS  +I+A+G        V         A  A    R++ + ++G 
Sbjct: 294 LGVRGTIKVNEKFQTSDPHIYAIGDAIEVKDFVTETETMIPLAWPANRQGRMLADIIHGH 353

Query: 407 QDQLMDYSFLPV----VVR-GDVEFGTVGMSEEAAAKVYGADGLVIYKSS------YPTF 455
            D      +       V +  D+   T G++E+   +       V++  +      YP  
Sbjct: 354 TDS----LYKGTLGTSVAKVFDLTVATTGLNEKILKR-LNIPYEVVHVQANSHAGYYPNA 408

Query: 456 DNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVK 492
             +         +KL+  K   ++ G   +G++   K
Sbjct: 409 TPV--------LIKLIFNKDSGKIYGAQTLGRDGVDK 437

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* Length = 480

 Score = 66.4 bits (163), Expect = 8e-12
 Identities = 46/277 (16%), Positives = 98/277 (35%), Gaps = 51/277 (18%)

Query: 241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLV-YSRRLLKHFDQEMVRILLSSLTKAGVSIQ 299
                ++GG  + +E+A T   LG  V ++  +  +   +D +M   +     K  + I 
Sbjct: 186 VEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIGTIYDGDMAEYIYKEADKHHIEI- 244

Query: 300 CCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAM----EKKFDFAALNLHHIGVD 355
             +  + + +F G + V     +     AD+   V+ ++       F      L    + 
Sbjct: 245 --LTNENVKAFKGNERVEAVETDKGTYKADL---VLVSVGVKPNTDF------LEGTNIR 293

Query: 356 IKKKSYVVCNEKDQTSVGNIFAVG------GIVHGKPNN---ASMAAISARLIIERLYGM 406
              K  +  N   QT+V +++A G       ++    ++    + A    RL    +   
Sbjct: 294 TNHKGAIEVNAYMQTNVQDVYAAGDCATHYHVIKEIHDHIPIGTTANKQGRLAGLNMLD- 352

Query: 407 QDQLMDYSFLPV----VVR-GDVEFGTVGMSEEAAAKVYGADGLVIYKSS------YPTF 455
                  +F       +++  ++     G++E+ A          +   S      YP  
Sbjct: 353 ----KRRAFKGTLGTGIIKFMNLTLARTGLNEKEAKG-LHIPYKTVKVDSTNMAGYYPNA 407

Query: 456 DNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVK 492
             L        ++KL+     +++LG  VIG+    K
Sbjct: 408 KPL--------YLKLLYRSDTKQLLGGQVIGEEGVDK 436

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* Length = 565

 Score = 66.5 bits (163), Expect = 9e-12
 Identities = 48/299 (16%), Positives = 101/299 (33%), Gaps = 52/299 (17%)

Query: 232 DDLFRLGAW-----PGKTLVLGGSLMAVEIAATLNFLGVPVTLV-YSRRLLKHFDQEMVR 285
            D+ R+             V+GG  + +E+  +L+ LG+  TL+  + +++   D+EM  
Sbjct: 137 PDMDRILQTIQMNNVEHATVVGGGFIGLEMMESLHHLGIKTTLLELADQVMTPVDREMAG 196

Query: 286 ILLSSLTKAGVSIQC-CVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVV--NAMEKKF 342
               ++   GV ++    + +V               ++         ++   N    + 
Sbjct: 197 FAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLET 256

Query: 343 DFAALN---------LHHIGVDIKKKSYVVCNEKDQTSVGNIFAVG------GIVHGKPN 387
           D   +              G+ I +   +  N   QTS   I+AVG        V G+  
Sbjct: 257 DLLIMAIGVRPETQLARDAGLAIGELGGIKVNAMMQTSDPAIYAVGDAVEEQDFVTGQAC 316

Query: 388 N---ASMAAISARLIIERLYGMQDQLMDYSFLPV----VVR-GDVEFGTVGMSEEAAAKV 439
               A  A    R+  + ++G      +  +       + +  D+  G  G +E+   + 
Sbjct: 317 LVPLAGPANRQGRMAADNMFG-----REERYQGTQGTAICKVFDLAVGATGKNEKQLKQ- 370

Query: 440 YGADGLVIYKSS------YPTFDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVK 492
            G     +Y  +      YP  + +          KL+       + G   +G++   K
Sbjct: 371 AGIAFEKVYVHTASHASYYPGAEVV--------SFKLLFDPVKGTIFGAQAVGKDGIDK 421

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 65.3 bits (158), Expect = 3e-11
 Identities = 73/458 (15%), Positives = 135/458 (29%), Gaps = 124/458 (27%)

Query: 67  VLREENARAERYLNARGDRFAVLYLD--RIGDEGILLE--EELKRQTNQRRDELQERGSH 122
            +  +   + +        F + +L+         +LE  ++L  Q +       +  S+
Sbjct: 165 WVALDVCLSYKVQCKMD--FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222

Query: 123 LSFRK---KRRLYYPVAMSDLELEQDSTSALNVTIRN-WNAATKLIKRFCIRAK------ 172
           +  R    +  L        L   +   + L V + N  NA  K    F +  K      
Sbjct: 223 IKLRIHSIQAEL------RRLLKSKPYENCLLV-LLNVQNA--KAWNAFNLSCKILLTTR 273

Query: 173 ----NDSMRELKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAVERRC--LPE---- 222
                D +       I +   +   T      L          L  ++ R   LP     
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL---------LLKYLDCRPQDLPREVLT 324

Query: 223 --PRNSALISA---DDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLK 277
             PR  ++I+    D L     W     V    L  + I ++LN L  P      R++  
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWK---HVNCDKLTTI-IESSLNVLE-PAEY---RKMFD 376

Query: 278 HFD--QEMVRILLSSLTKAGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVV 335
                     I    L          +I   +   D M  V   H  S            
Sbjct: 377 RLSVFPPSAHIPTILL---------SLIWFDVIKSDVMVVVNKLHKYS------------ 415

Query: 336 NAMEKKFDFAALNLHHIGVDIKKK-------------SYVVCNEKDQTSVGNIFAVGGIV 382
             +EK+   + +++  I +++K K              Y +    D   +   +      
Sbjct: 416 -LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY 474

Query: 383 -----HGKPNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAA 437
                H K  N            ER+   +   +D+ FL   +R D        +  A+ 
Sbjct: 475 SHIGHHLK--NIEHP--------ERMTLFRMVFLDFRFLEQKIRHD------STAWNASG 518

Query: 438 KVYG--ADGLVIYKS----SYPTFDNLLDPLLPENFVK 469
            +       L  YK     + P ++ L++ +L  +F+ 
Sbjct: 519 SILNTLQQ-LKFYKPYICDNDPKYERLVNAIL--DFLP 553

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 2e-05
 Identities = 52/328 (15%), Positives = 92/328 (28%), Gaps = 67/328 (20%)

Query: 39  DLLPSFETPPAYISRLSYENRILIFTHAVLREENARAERYLNARGDRFAVLYLDRIGDEG 98
           D+L  FE   A++     ++ +     ++L +E    +  + ++      L L       
Sbjct: 20  DILSVFE--DAFVDNFDCKD-VQDMPKSILSKEEI--DHIIMSKDAVSGTLRL-----FW 69

Query: 99  ILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALN---VTIR 155
            LL +             QE        +  R+ Y   MS ++ EQ   S +    +  R
Sbjct: 70  TLLSK-------------QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR 116

Query: 156 N--WNAATKLIKRFCIRAK-----NDSMRELK-ALGIDI---------VRTAAAFTNPHT 198
           +  +N      K    R +       ++ EL+ A  + I                 +   
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV 176

Query: 199 IKLSNRSVTGFNFLLAVERRCLPEPRNSALISADDLFRLGAWPGKTLVLGGS---LMAVE 255
               +  +    F L ++    PE   + L     L         +     S   L    
Sbjct: 177 QCKMDFKI----FWLNLKNCNSPE---TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229

Query: 256 IAATLNFL----GVPVTL-----VYSRRLLKHFDQEMVRILLSSLTKAGVSIQCCVIEKV 306
           I A L  L         L     V + +    F+    +ILL++  K             
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS-CKILLTTRFKQVTDFLSAATTTH 288

Query: 307 ISSFDGMKGVRGFHP-ESKEPFADVFKT 333
           IS            P E K         
Sbjct: 289 ISLDHHSM---TLTPDEVKSLLLKYLDC 313

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 9e-05
 Identities = 50/373 (13%), Positives = 102/373 (27%), Gaps = 108/373 (28%)

Query: 6   DFLSKSQTSGLNAIHAIPSFHEAKTCSPTAS----SCDLLPS--FETPPAYISRLSYENR 59
           DFLS + T+ ++  H   +    +  S            LP     T P  +S       
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS------- 331

Query: 60  ILIFTHAVLREENARAERYLNARGDRFAVLYLDRIGDEGILLEEELKRQTNQRRDELQER 119
            +I     +R+  A  + + +   D+     L  I      +E  L              
Sbjct: 332 -II--AESIRDGLATWDNWKHVNCDK-----LTTI------IESSLN------------- 364

Query: 120 GSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTI----RNWNA---------ATKLIKR 166
              L   + R+++       L +   S    ++        W             KL K 
Sbjct: 365 --VLEPAEYRKMFD-----RLSVFPPSA---HIPTILLSLIWFDVIKSDVMVVVNKLHKY 414

Query: 167 FCI-RAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAVERRCLPEPRN 225
             + +   +S   + ++ +++          H        V  +N     +   L  P  
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLENEYALH-----RSIVDHYNIPKTFDSDDLIPPYL 469

Query: 226 SA---------LISAD-----DLFRLG----AWPGKTLVLGGSLMAVEIAATLNFLGVPV 267
                      L + +      LFR+      +  + +    +       + LN L    
Sbjct: 470 DQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNAS-GSILNTLQ--Q 526

Query: 268 TLVYSRRLLKH--FDQEMVRILLSSLTKAGVSI----QCCVIEKVISSFDGMKGVRGFHP 321
              Y   +  +    + +V  +L  L K   ++       ++                  
Sbjct: 527 LKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLR------------IALMA 574

Query: 322 ESKEPFADVFKTV 334
           E +  F +  K V
Sbjct: 575 EDEAIFEEAHKQV 587

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} Length = 452

 Score = 63.7 bits (156), Expect = 5e-11
 Identities = 45/288 (15%), Positives = 85/288 (29%), Gaps = 54/288 (18%)

Query: 232 DDLFRLGAW---PGKTLVLGGSLMAVEIAATLNFLGVPVTLV--YSRRLLKHFDQEMVRI 286
                            V+G   + +E    L  +   V +       L K+FD+EMV  
Sbjct: 135 SGALAAVPLLENSQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLLPKYFDKEMVAE 194

Query: 287 LLSSLTKAGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAM----EKKF 342
           +  SL K  V       E+ +   +            +E   D     + A+    +  +
Sbjct: 195 VQKSLEKQAVIF---HFEETVLGIEETANGIVLETSEQEISCDS---GIFALNLHPQLAY 248

Query: 343 DFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVG------GIVHGKPNN---ASMAA 393
                      +       +  +   QTSV N+FA+G           +       + A 
Sbjct: 249 -LDK------KIQRNLDQTIAVDAYLQTSVPNVFAIGDCISVMNEPVAETFYAPLVNNAV 301

Query: 394 ISARLIIERLYGMQDQLMDYSFLPV----VVR-GDVEFGTVGMSEEAAAKVYGADGLVIY 448
            +  ++   L         + F+        + GD    + G++E      +      I 
Sbjct: 302 RTGLVVANNLEE-----KTHRFIGSLRTMGTKVGDYYLASTGLTETEGLF-FPQTLASII 355

Query: 449 KSS----YPTFDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVK 492
                        +          KL+  K  +RVLG  +  +NN ++
Sbjct: 356 VRQPAPPLQHGTEI--------LGKLIYDKVTQRVLGAQLCSKNNCLE 395

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} Length = 449

 Score = 60.6 bits (148), Expect = 6e-10
 Identities = 66/313 (21%), Positives = 117/313 (37%), Gaps = 66/313 (21%)

Query: 241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLV--YSRRLLKHFDQEMVRILLSSLTKAGVSI 298
               +++GG  + +E+A      G  VT++    R L + FD+E+  IL   L K  V++
Sbjct: 148 VENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLRRSFDKEVTDILEEKLKK-HVNL 206

Query: 299 QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAM----EKKFDFAALNLHHIGV 354
               ++++    +G + V     ++ E  A++   V+ A       +          +GV
Sbjct: 207 ---RLQEITMKIEGEERVEKVVTDAGEYKAEL---VILATGIKPNIEL------AKQLGV 254

Query: 355 DIKKKSYVVCNEKDQTSVGNIFAVG------GIVHGKPNN---ASMAAISARLIIERLYG 405
            I +   +  NEK QTSV N++A G       ++ G+      A        +    + G
Sbjct: 255 RIGETGAIWTNEKMQTSVENVYAAGDVAETRHVITGRRVWVPLAPAGNKMGYVAGSNIAG 314

Query: 406 MQDQLMDYSFLPV----VVR-GDVEFGTVGMSEEAAAKV-YGADGLVIYKSSYPTFDNLL 459
                 +  F  V    V +  DVE G  G++E  A K  Y      I  S+ P +    
Sbjct: 315 -----KELHFPGVLGTAVTKFMDVEIGKTGLTEMEALKEGYDVRTAFIKASTRPHY---- 365

Query: 460 DPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGY 519
                          GG  +          ++K V      R+LG+ V+G ++   I   
Sbjct: 366 -------------YPGGREI----------WLKGVVDNETNRLLGVQVVGSDILPRIDTA 402

Query: 520 SLALRKFLTKAEL 532
           +  L    T  + 
Sbjct: 403 AAMLMAGFTTKDA 415

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} Length = 452

 Score = 60.2 bits (147), Expect = 7e-10
 Identities = 40/289 (13%), Positives = 88/289 (30%), Gaps = 54/289 (18%)

Query: 231 ADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLV--YSRRLLKHFDQEMVRILL 288
           A  LF          ++G   +  E+A   +     V L+  + R L K+FD+E   IL 
Sbjct: 139 AKKLFEEAPKAKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLYKYFDKEFTDILA 198

Query: 289 SSLTKAGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPF-ADVFKTVVNAM----EKKFD 343
                 GV++   V+   +++F+ +           +   +D+    +  +      +  
Sbjct: 199 KDYEAHGVNL---VLGSKVAAFEEVDDEIITKTLDGKEIKSDI---AILCIGFRPNTEL- 251

Query: 344 FAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVG------GIVHGKPNN---ASMAAI 394
                     V +     ++ +E   +S  +IFA G                  A+ A  
Sbjct: 252 LKG------KVAMLDNGAIITDEYMHSSNRDIFAAGDSAAVHYNPTNSNAYIPLATNAVR 305

Query: 395 SARLIIERLYGMQDQLMDYSFLPV----VVR-GDVEFGTVGMSEEAAAKVYGADGLVIYK 449
             RL+   L            +       ++     + + G++   A          +  
Sbjct: 306 QGRLVGLNLTE-----DKVKDMGTQSSSGLKLYGRTYVSTGINTALAKA-NNLKVSEVII 359

Query: 450 SS------YPTFDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVK 492
           +         + D +         + LV       +LG  +   ++  +
Sbjct: 360 ADNYRPEFMLSTDEV--------LMSLVYDPKTRVILGGALSSMHDVSQ 400

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* Length = 447

 Score = 59.4 bits (145), Expect = 1e-09
 Identities = 47/278 (16%), Positives = 93/278 (33%), Gaps = 53/278 (19%)

Query: 241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLV--YSRRLLKHFDQEMVRILLSSLTKAGVSI 298
               +V+G   + +E A      G  VT++    R L  + D+E   +L   +    ++I
Sbjct: 149 VNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITI 208

Query: 299 QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAM----EKKFDFAALNLHHIGV 354
                 + +  ++G   V+    +     AD+   VV A+       +           +
Sbjct: 209 ---ATGETVERYEGDGRVQKVVTDKNAYDADL---VVVAVGVRPNTAW-LKG------TL 255

Query: 355 DIKKKSYVVCNEKDQTSVGNIFAVG------GIVHGKPNN---ASMAAISARLIIERLYG 405
           ++     +  +E  +TS  ++FAVG              N   A+ A    R  ++ L  
Sbjct: 256 ELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNLEE 315

Query: 406 MQDQLMDYSFLPV----VVR-GDVEFGTVGMSEEAAAKVYGADGLVIYKSS------YPT 454
                    F  V     +   D +F + G++E  A K  G +   +           P 
Sbjct: 316 -----PVKPFPGVQGSSGLAVFDYKFASTGINEVMAQK-LGKETKAVTVVEDYLMDFNPD 369

Query: 455 FDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVK 492
                       + KLV      ++LG  ++ + +   
Sbjct: 370 KQKA--------WFKLVYDPETTQILGAQLMSKADLTA 399

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A* Length = 490

 Score = 58.3 bits (142), Expect = 3e-09
 Identities = 42/278 (15%), Positives = 94/278 (33%), Gaps = 52/278 (18%)

Query: 241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLV--YSRRLLKHFDQEMVRILLSSLTKAGVSI 298
             +  V+G   + VE+A      G  V L+      L  ++D+++  ++  ++ + G+ +
Sbjct: 194 IKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCLAGYYDRDLTDLMAKNMEEHGIQL 253

Query: 299 QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAM----EKKFDFAALNLHHIGV 354
                 + +    G   V     +  E   D+   V+ A+                   +
Sbjct: 254 ---AFGETVKEVAGNGKVEKIITDKNEYDVDM---VILAVGFRPNTTL-GNG------KI 300

Query: 355 DIKKKSYVVCNEKDQTSVGNIFAVG------GIVHGKPNN---ASMAAISARLIIERLYG 405
           D+ +    + N++ +TS+  ++A+G             N    AS A  +  +      G
Sbjct: 301 DLFRNGAFLVNKRQETSIPGVYAIGDCATIYDNATRDTNYIALASNAVRTGIVAAHNACG 360

Query: 406 MQDQLMDYSFLPV----VVR-GDVEFGTVGMSEEAAAKVYGADGLVIYKSS------YPT 454
                 D   + V     +    +   + G++ E A +  G D  V   +          
Sbjct: 361 -----TDLEGIGVQGSNGISIYGLHMVSTGLTLEKAKR-LGFDAAVTEYTDNQKPEFIEH 414

Query: 455 FDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVK 492
            +  +        +K+V  K   R+LG  +  + +   
Sbjct: 415 GNFPV-------TIKIVYDKDSRRILGAQMAAREDVSM 445

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} Length = 472

 Score = 54.8 bits (133), Expect = 3e-08
 Identities = 58/321 (18%), Positives = 113/321 (35%), Gaps = 76/321 (23%)

Query: 241 PGKTLVLGGSLMAVEIA-ATLNFLGVPVTLV--YSRRLLKHFDQEMVRILLSSLTKAGVS 297
             K +++GG  + +E+A +  +  G+  T+V    + +     + + ++L   L K  V 
Sbjct: 159 VSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMPGFTSKSLSQMLRHDLEKNDVV 218

Query: 298 IQCCVIEKVISSFDGMKGVRGFHPESKEPF-ADVFKTVVNAM----EKKFDFAALNLHHI 352
           +      + +   +G  G        K    AD+   V+ A       +    A      
Sbjct: 219 V---HTGEKVVRLEGENGKVARVITDKRTLDADL---VILAAGVSPNTQLARDA------ 266

Query: 353 GVDIKKKSYVVCNEKDQTSVGNIFAVG------GIVHGKPNN---ASMAAISARLIIERL 403
           G+++  +  ++ + + +TS  +IFA G       +V GKP      SMA    R+I   L
Sbjct: 267 GLELDPRGAIIVDTRMRTSDPDIFAGGDCVTIPNLVTGKPGFFPLGSMANRQGRVIGTNL 326

Query: 404 YGMQDQLMDYSFLPV----VVR-GDVEFGTVGMSEEAAAKVYGADGLVIYKSS------Y 452
                   D +F        V+  +      G++ E A +  G D + ++         Y
Sbjct: 327 AD-----GDATFPGAVGSWAVKLFEGSASGAGLTVEGALR-EGYDAVNVHVEQFDRAHFY 380

Query: 453 PTFDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLG-IHVIGQN 511
           P    +         ++LV  +   RVLGI                G+ +   I+ +   
Sbjct: 381 PEKTIM--------TLQLVVDRPTRRVLGIQGFS----------TLGDALTARINAV--- 419

Query: 512 VAGMIFGYSLALRKFLTKAEL 532
                   +  L    T  ++
Sbjct: 420 --------ATMLASKPTVEDI 432

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* Length = 304

 Score = 44.1 bits (105), Expect = 5e-05
 Identities = 23/175 (13%), Positives = 53/175 (30%), Gaps = 30/175 (17%)

Query: 242 GKTLVLG-GSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVSIQC 300
              +++       + +   +        ++ +        Q     ++  L+   + +  
Sbjct: 147 QPLIIISENEDHTLHMTKLVYNWS-TDLVIATNGNE--LSQT----IMDELSNKNIPVIT 199

Query: 301 CVIEKVISSFDGMKGVRGFHPESKEPFADVF---KTVVNAMEKKFDFAALNLHHIGVDIK 357
             I  +      +K V  FH   +   A  F               F       +G +++
Sbjct: 200 ESIRTLQGEGGYLKKVE-FHSGLRIERAGGFIVPTFFRPN-----QFIE----QLGCELQ 249

Query: 358 KKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNA-------SMAAISA--RLIIERL 403
                V ++  +TS  NI+  G      P++        + AAI+    +  ER 
Sbjct: 250 SNGTFVIDDFGRTSEKNIYLAGETTTQGPSSLIIAASQGNKAAIAINSDITDERF 304

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} Length = 404

 Score = 41.8 bits (99), Expect = 4e-04
 Identities = 37/229 (16%), Positives = 75/229 (32%), Gaps = 49/229 (21%)

Query: 179 LKALGIDIVRTAAAFTNP--HTIKLSNRSVTGFNFLL----AVERRCLPEPRNSA----- 227
            +   I+++       +     + L++ +   +  L+    A  R  L  P  S      
Sbjct: 67  FQDQAIELISDRMVSIDREGRKLLLASGTAIEYGHLVLATGARNRM-LDVPNASLPDVLY 125

Query: 228 LISADDLFRLGAW--PGKTL-VLGGSLMAVEIAATLNFLGVPVTLV-YSRRLLKH-FDQE 282
           L + D+   L       K + V+G   + +E AAT    G+ V +V  + R++      E
Sbjct: 126 LRTLDESEVLRQRMPDKKHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVMARVVTPE 185

Query: 283 MVRILLSSLTKAGVSIQCCVIEKVISSFDGMKG-VRGFHPESKEPF-ADVFKTVVNAMEK 340
           +        + AG+ +         +        V G           D+   VV     
Sbjct: 186 ISSYFHDRHSGAGIRMHY---GVRATEIAAEGDRVTGVVLSDGNTLPCDL---VVVG--- 236

Query: 341 KFDFAALNLHHIGVD----------IKKKSYVVCNEKDQTSVGNIFAVG 379
                      +GV           +   + ++ +++  TS  +I A+G
Sbjct: 237 -----------VGVIPNVEIAAAAGLPTAAGIIVDQQLLTSDPHISAIG 274

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 367

 Score = 41.0 bits (97), Expect = 8e-04
 Identities = 30/173 (17%), Positives = 63/173 (36%), Gaps = 45/173 (26%)

Query: 232 DDLFRLGAW---PGKTLVLGGSLMAVEIAATLNFLGVPVTLV-YSRRLLKHFDQEMVRIL 287
            D  R+       G+ +++GG  + +E+A  L   G  V L+      L   D+E+  ++
Sbjct: 131 FDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFL-GLDEELSNMI 189

Query: 288 LSSLTKAGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAAL 347
              L + GV          +   +  +GV            +     +            
Sbjct: 190 KDMLEETGVKFFL---NSELLEANE-EGV----------LTN--SGFIEG-----KVKIC 228

Query: 348 NLHHIGV----DIKKKSY------VVCNEKDQTSVGNIFAVG------GIVHG 384
               IG+    D+ ++S       ++ ++  +TS  +++A+G      GI+ G
Sbjct: 229 A---IGIVPNVDLARRSGIHTGRGILIDDNFRTSAKDVYAIGDCAEYSGIIAG 278

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} Length = 410

 Score = 41.0 bits (97), Expect = 8e-04
 Identities = 41/229 (17%), Positives = 74/229 (32%), Gaps = 49/229 (21%)

Query: 179 LKALGIDIV--RTAAAF-TNPHTIKLSNRSVTGFNFLL----AVERRCLPEPRNSA---- 227
                ID++      A      TI L + +    + ++    +  R  +  P +      
Sbjct: 67  YGEARIDMLTGPEVTALDVQTRTISLDDGTTLSADAIVIATGSRART-MALPGSQLPGVV 125

Query: 228 -LISADDLFRLGAW--PGKTL-VLGGSLMAVEIAATLNFLGVPVTLV-YSRRLLKH-FDQ 281
            L +  D+  L         L ++GG L+  E+A T   LG+ VT++     LL     +
Sbjct: 126 TLRTYGDVQVLRDSWTSATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELLVRVLGR 185

Query: 282 EMVRILLSSLTKAGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPF-ADVFKTVVNAMEK 340
            +   L   LT+ GV ++       +  F G   +          F AD     +     
Sbjct: 186 RIGAWLRGLLTELGVQVEL---GTGVVGFSGEGQLEQVMASDGRSFVADS---ALIC--- 236

Query: 341 KFDFAALNLHHIGVD----------IKKKSYVVCNEKDQTSVGNIFAVG 379
                      +G +          +     V+ +    T    +FAVG
Sbjct: 237 -----------VGAEPADQLARQAGLACDRGVIVDHCGATLAKGVFAVG 274

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	535
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	100.0
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	100.0
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	100.0
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	100.0
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	100.0
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	100.0
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	100.0
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	100.0
4dna_A	463	Probable glutathione reductase; structural genomic	100.0
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	100.0
1fec_A	490	Trypanothione reductase; redox-active center, oxid	100.0
1ojt_A	482	Surface protein; redox-active center, glycolysis,	100.0
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	100.0
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	100.0
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	100.0
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	100.0
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	100.0
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	100.0
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	100.0
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	100.0
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	100.0
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	100.0
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	100.0
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	100.0
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	100.0
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	100.0
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	100.0
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	100.0
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	100.0
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	100.0
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	100.0
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	100.0
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	100.0
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	100.0
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	100.0
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	100.0
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	100.0
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	100.0
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	100.0
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	100.0
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	100.0
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	100.0
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	100.0
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	100.0
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	100.0
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	100.0
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	100.0
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	100.0
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	100.0
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	100.0
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	100.0
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	100.0
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	100.0
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	100.0
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	100.0
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	100.0
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	100.0
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	100.0
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	100.0
3r9u_A	315	Thioredoxin reductase; structural genomics, center	100.0
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	100.0
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	100.0
4fk1_A	304	Putative thioredoxin reductase; structural genomic	100.0
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	100.0
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	100.0
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	100.0
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	100.0
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	100.0
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	100.0
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	100.0
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	99.98
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	99.97
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	99.97
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	99.97
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	99.97
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	99.97
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	99.96
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	99.96
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	99.96
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	99.96
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	99.96
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	99.95
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	99.95
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	99.95
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	99.95
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	99.94
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	99.93
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	99.92
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	99.88
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	99.87
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	99.84
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	99.82
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	99.79
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	99.72
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	99.54
2cul_A	232	Glucose-inhibited division protein A-related PROT	99.49
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	99.39
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	99.29
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	99.22
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	99.11
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	98.87
2bry_A	497	NEDD9 interacting protein with calponin homology a	98.85
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	98.79
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	98.75
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	98.49
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	98.48
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	98.48
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	98.45
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	98.45
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	98.43
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	98.43
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	98.41
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	98.4
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	98.38
4fk1_A	304	Putative thioredoxin reductase; structural genomic	98.36
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	98.35
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	98.35
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	98.3
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	98.29
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	98.28
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	98.27
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	98.27
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	98.26
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	98.25
3r9u_A	315	Thioredoxin reductase; structural genomics, center	98.24
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	98.2
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	98.2
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	98.17
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	98.17
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	98.17
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	98.17
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.16
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	98.16
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	98.16
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	98.16
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	98.15
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	98.15
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	98.13
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	98.13
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.13
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	98.12
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	98.11
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	98.11
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	98.1
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	98.1
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	98.1
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	98.1
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	98.09
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	98.08
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.08
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.07
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	98.06
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	98.06
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	98.06
3atr_A	453	Conserved archaeal protein; saturating double bond	98.05
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.05
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	98.05
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	98.04
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	98.03
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	98.03
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	98.02
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	98.0
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	98.0
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	97.99
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	97.99
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	97.99
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	97.98
3h8q_A	114	Thioredoxin reductase 3; oxidoreductase, structura	97.98
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	97.98
3dme_A	369	Conserved exported protein; structural genomics, P	97.98
2cul_A	232	Glucose-inhibited division protein A-related PROT	97.95
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	97.94
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	97.94
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	97.92
3l4n_A	127	Monothiol glutaredoxin-6; C-terminal domain of GRX	97.91
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	97.91
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	97.9
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	97.88
4hb9_A	412	Similarities with probable monooxygenase; flavin,	97.88
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	97.86
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	97.86
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	97.86
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	97.85
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	97.85
3zyw_A	111	Glutaredoxin-3; metal binding protein; 1.84A {Homo	97.85
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	97.84
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	97.84
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	97.82
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	97.81
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	97.81
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	97.81
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	97.81
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	97.81
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	97.8
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	97.79
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	97.76
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	97.76
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	97.75
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	97.75
3gx8_A	121	Monothiol glutaredoxin-5, mitochondrial; TRX fold,	97.75
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	97.75
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	97.75
2bry_A	497	NEDD9 interacting protein with calponin homology a	97.72
2wem_A	118	Glutaredoxin-related protein 5; chromosome 14 open	97.7
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	97.7
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	97.7
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	97.7
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	97.7
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	97.69
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	97.69
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	97.67
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	97.67
2wul_A	118	Glutaredoxin related protein 5; chromosome 14 open	97.67
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	97.65
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	97.65
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	97.63
1ojt_A	482	Surface protein; redox-active center, glycolysis,	97.62
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	97.62
3rhb_A	113	ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox	97.61
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	97.61
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	97.6
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	97.6
3ipz_A	109	Monothiol glutaredoxin-S14, chloroplastic; electro	97.58
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	97.58
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	97.58
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	97.56
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	97.55
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	97.54
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	97.54
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	97.53
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	97.51
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	97.5
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	97.5
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	97.47
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.45
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	97.44
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	97.43
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	97.41
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	97.39
3ctg_A	129	Glutaredoxin-2; reduced form, electron transport,	97.39
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	97.39
1fec_A	490	Trypanothione reductase; redox-active center, oxid	97.38
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	97.37
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	97.35
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	97.35
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	97.35
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	97.34
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	97.33
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	97.33
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	97.33
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.33
4dna_A	463	Probable glutathione reductase; structural genomic	97.32
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	97.31
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	97.3
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	97.29
1wik_A	109	Thioredoxin-like protein 2; picot homology 2 domai	97.29
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	97.27
3dme_A	369	Conserved exported protein; structural genomics, P	97.27
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	97.26
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	97.26
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	97.26
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	97.24
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	97.23
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	97.23
2wci_A	135	Glutaredoxin-4; redox-active center, iron-sulfur c	97.21
2lqo_A	92	Putative glutaredoxin RV3198.1/MT3292; TRX fold, o	97.21
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	97.21
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	97.21
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	97.21
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	97.21
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	97.19
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	97.18
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	97.17
3c1r_A	118	Glutaredoxin-1; oxidized form, oxidoreductase, cyt	97.14
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	97.13
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	97.13
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	97.12
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	97.11
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	97.11
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	97.11
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	97.07
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	97.07
2yan_A	105	Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H	97.05
3atr_A	453	Conserved archaeal protein; saturating double bond	97.05
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	97.04
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	97.04
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	97.04
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	97.02
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	97.01
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	97.0
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	96.98
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	96.97
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	96.96
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	96.96
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	96.95
2cq9_A	130	GLRX2 protein, glutaredoxin 2; glutathione-S-trans	96.94
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	96.92
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	96.92
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	96.92
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	96.9
2ht9_A	146	Glutaredoxin-2; thioredoxin fold, iron-sulfur clus	96.9
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	96.89
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	96.88
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	96.87
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	96.86
2jad_A	362	Yellow fluorescent protein glutaredoxin fusion pro	96.85
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	96.84
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	96.83
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	96.8
1kte_A	105	Thioltransferase; redox-active center, electron tr	96.8
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	96.79
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	96.79
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	96.71
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	96.69
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	96.68
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	96.68
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	96.67
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	96.66
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	96.64
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	96.6
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	96.58
2hze_A	114	Glutaredoxin-1; thioredoxin fold, arsenic, dimethy	96.58
1aba_A	87	Glutaredoxin; electron transport; HET: MES; 1.45A	96.58
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	96.56
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	96.53
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	96.51
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	96.49
3qmx_A	99	Glutaredoxin A, glutaredoxin 3; electron transport	96.41
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	96.22
3nzn_A	103	Glutaredoxin; structural genomics, PSI2, MCSG, pro	95.92
4hb9_A	412	Similarities with probable monooxygenase; flavin,	95.91
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	95.89
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	95.86
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	95.83
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	95.67
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	95.49
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	95.46
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	95.46
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	95.36
1t1v_A	93	SH3BGRL3, SH3 domain-binding glutamic acid-rich pr	95.26
3msz_A	89	Glutaredoxin 1; alpha-beta sandwich, center for st	95.16
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	95.11
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	95.09
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	95.01
2klx_A	89	Glutaredoxin; thioredoxin type domain, ssgcid, ele	94.99
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	94.97
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	94.95
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	94.93
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	94.89
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	94.78
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	94.76
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	94.7
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	94.7
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	94.7
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	94.67
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	94.66
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	94.66
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	94.56
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	94.54
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	94.48
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	94.46
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	94.41
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	94.29
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	94.24
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	94.17
2ct6_A	111	SH3 domain-binding glutamic acid-rich-like protein	94.05
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	94.04
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	93.99
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	93.99
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	93.96
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	93.89
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	93.88
3ic4_A	92	Glutaredoxin (GRX-1); structural genomics, PSI, MC	93.82
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	93.81
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	93.81
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	93.79
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	93.68
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	93.68
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	93.67
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	93.66
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	93.64
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	93.58
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	93.57
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	93.56
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	93.56
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	93.49
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	93.46
1fov_A	82	Glutaredoxin 3, GRX3; active site disulfide, CIS P	93.43
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	93.39
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	93.36
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	93.32
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	93.29
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	93.27
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	93.25
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	93.25
2khp_A	92	Glutaredoxin; thioredoxin type domain, ssgcid, ele	93.11
1rw1_A	114	Conserved hypothetical protein YFFB; thioredoxin f	93.1
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	93.05
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	92.94
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	92.89
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	92.72
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	92.69
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	92.67
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	92.61
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	92.55
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	92.51
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	92.5
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	92.44
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	92.44
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	92.37
1z3e_A	132	Regulatory protein SPX; bacterial transcription re	92.36
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	92.35
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	92.33
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	92.31
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	92.25
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	92.23
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	92.22
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	92.18
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	92.16
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	92.15
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	92.14
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	92.05
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	92.02
1id1_A	153	Putative potassium channel protein; RCK domain, E.	92.0
1ttz_A	87	Conserved hypothetical protein; structural genomic	91.98
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	91.89
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	91.8
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	91.78
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	91.72
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	91.72
1u6t_A	121	SH3 domain-binding glutamic acid-rich-like protein	91.68
2kok_A	120	Arsenate reductase; brucellosis, zoonotic, oxidore	91.59
3l78_A	120	Regulatory protein SPX; transcription, transcripti	91.53
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	91.52
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	91.5
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	91.44
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	91.43
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	91.03
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	90.97
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	90.94
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	90.9
2k8s_A	80	Thioredoxin; dimer, structural genomics, PSI-2, pr	90.89
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	90.86
1wjk_A	100	C330018D20RIK protein; glutaredoxin, thioredoxin f	90.82
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	90.68
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	90.66
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	90.62
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	90.59
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	90.59
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	90.5
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	90.41
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	90.4
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	90.35
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	90.16
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	90.13
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	89.85
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	89.58
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	89.38
3gkx_A	120	Putative ARSC family related protein; ARSC family	89.09
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	88.84
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	88.83
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	88.73
3fz4_A	120	Putative arsenate reductase; APC61768, structural	88.48
3rdw_A	121	Putative arsenate reductase; structural genomics,	88.28
3c85_A	183	Putative glutathione-regulated potassium-efflux S	88.17
1s3c_A	141	Arsenate reductase; ARSC, arsenite, oxidoreductase	88.1
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	87.99
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	87.48
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	87.4
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	87.33
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	87.28
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	87.16
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	87.06
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	87.0
3f0i_A	119	Arsenate reductase; structural genomics, IDP01300,	86.28
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	85.86
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	85.01
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	84.9
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	84.52
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	84.4
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	83.97
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	83.46
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	83.33
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	83.3
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	83.25
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	83.02
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	82.36
3hn7_A	524	UDP-N-acetylmuramate-L-alanine ligase; ATP-binding	81.95
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	81.89
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	81.85
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	81.83
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	81.32
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	81.07
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	81.02
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	80.87
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	80.52
2axo_A	270	Hypothetical protein ATU2684; alpha beta protein.,	80.42

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=100.00  E-value=1.2e-63  Score=537.15  Aligned_cols=432  Identities=24%  Similarity=0.350  Sum_probs=344.4

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCc--------ccc-------cccccccccccccchhh-cccccc-ccc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSH--------LSF-------RKKRRLYYPVAMSDLEL-EQDSTS-ALN  151 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~--------~~~-------~~~~l~~~~~~i~~~~~-~~~~~~-~~~  151 (535)
                      +|++|||+||+|+.+|++....+.+|+|||+...        +++       .|.+++.....+..... ....+. ...
T Consensus        43 YDviVIG~GpaG~~aA~~aa~~G~kValIE~~~~~~~~~k~~lGGtCln~GCIPsK~L~~aa~~~~~~~~~~~~~Gi~~~  122 (542)
T 4b1b_A           43 YDYVVIGGGPGGMASAKEAAAHGARVLLFDYVKPSSQGTKWGIGGTCVNVGCVPKKLMHYAGHMGSIFKLDSKAYGWKFD  122 (542)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECCCCCCTTCCCCCSSHHHHHHSHHHHHHHHHHHHHHHHHHHTGGGGTEEEE
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCCCcccccchHHHHHHHHHHHHHHHHHhhhHhcCcccC
Confidence            8999999999999999999999999999997542        221       11111111000100000 011111 123


Q ss_pred             ccccCHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEc-------eeEEEcceEEEeeCceecC-CC
Q psy14461        152 VTIRNWNAATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLS-------NRSVTGFNFLLAVERRCLP-EP  223 (535)
Q Consensus       152 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~-------~~~~~~d~lViATGs~p~~-~i  223 (535)
                      ...+||.+++++++..++++...+...+++.+|+++.|.+.+.+++++.+.       .+++++|++|||||++|.. +.
T Consensus       123 ~~~~d~~~~~~~~~~~v~~l~~~~~~~l~~~~V~~i~G~a~f~~~~~v~V~~~~~~~~~~~i~a~~iiIATGs~P~~P~~  202 (542)
T 4b1b_A          123 NLKHDWKKLVTTVQSHIRSLNFSYMTGLRSSKVKYINGLAKLKDKNTVSYYLKGDLSKEETVTGKYILIATGCRPHIPDD  202 (542)
T ss_dssp             EEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEEEETTEEEEEEC--CCCEEEEEEEEEEECCCEEECCCSS
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeeEEEcCCCcceEeecccCCceEEEeeeeEEeccCCCCCCCCc
Confidence            557899999999999999999989999999999999999999999999872       2679999999999999987 54


Q ss_pred             C-C--CceechhhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEcCcCCccCcHHHHHHHHHhhhcCCeEE-c
Q psy14461        224 R-N--SALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVSI-Q  299 (535)
Q Consensus       224 ~-G--~~v~~~~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~i-~  299 (535)
                      + +  +.++|+++++.++++|++++|||||++|+|+|..|+++|.+||++.++++++.+|+++.+.+++.|+++||++ +
T Consensus       203 ~~~~~~~~~ts~~~l~l~~lP~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~~~L~~~D~ei~~~l~~~l~~~gi~~~~  282 (542)
T 4b1b_A          203 VEGAKELSITSDDIFSLKKDPGKTLVVGASYVALECSGFLNSLGYDVTVAVRSIVLRGFDQQCAVKVKLYMEEQGVMFKN  282 (542)
T ss_dssp             SBTHHHHCBCHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHHHTCCEEEEESSCSSTTSCHHHHHHHHHHHHHTTCEEEE
T ss_pred             ccCCCccccCchhhhccccCCceEEEECCCHHHHHHHHHHHhcCCeEEEecccccccccchhHHHHHHHHHHhhcceeec
Confidence            4 3  5689999999999999999999999999999999999999999998877889999999999999999999999 9


Q ss_pred             ceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCce-EcCCCCCcCCCCEEEe
Q psy14461        300 CCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYV-VCNEKDQTSVGNIFAV  378 (535)
Q Consensus       300 ~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i-~vd~~~~T~~~~IyA~  378 (535)
                      +..+++++.. ++.+.|.+.   +++  ++++|.|++|+|++||++.|+++.++++++++|.+ .+|+++||++|+|||+
T Consensus       283 ~~~v~~~~~~-~~~~~v~~~---~~~--~~~~D~vLvAvGR~Pnt~~L~le~~gv~~~~~~~~i~vd~~~~Ts~p~IyAi  356 (542)
T 4b1b_A          283 GILPKKLTKM-DDKILVEFS---DKT--SELYDTVLYAIGRKGDIDGLNLESLNMNVNKSNNKIIADHLSCTNIPSIFAV  356 (542)
T ss_dssp             TCCEEEEEEE-TTEEEEEET---TSC--EEEESEEEECSCEEESCGGGCGGGTTCCEETTTTEECCCTTSBCSSTTEEEC
T ss_pred             ceEEEEEEec-CCeEEEEEc---CCC--eEEEEEEEEcccccCCccccCcccceeeecccCceEeccccccccCCCeEEe
Confidence            9999999887 566777773   565  68899999999999999999999999999876664 7889999999999999


Q ss_pred             CCcCCCC-CCcHHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCccc
Q psy14461        379 GGIVHGK-PNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDN  457 (535)
Q Consensus       379 GD~~~~~-~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~  457 (535)
                      |||+ ++ |++.|.|.+||++|++||++......++..+|+++|++|++|+||+||+||+++++..++.++...+.....
T Consensus       357 GDv~-~~~p~La~~A~~eg~~aa~~i~g~~~~~~d~~~iP~~vft~PeiA~VGlTE~eA~~~g~~~~v~~~~~~~~~~~~  435 (542)
T 4b1b_A          357 GDVA-ENVPELAPVAIKAGEILARRLFKDSDEIMDYSYIPTSIYTPIEYGACGYSEEKAYELYGKSNVEVFLQEFNNLEI  435 (542)
T ss_dssp             TTSB-TTCCCCHHHHHHHHHHHHHHHHSCCCCCCCCSSCCEEECSSSCEEEEECCHHHHHHHHCTTTEEEEEC-------
T ss_pred             cccc-CCchhHHHHHHHHHHHHHHHHhcCCCcccCCCCCceEEeCCCCeEEEeCCHHHHHHhCCCCcEEEEEeeccchhh
Confidence            9999 55 789999999999999999998877789999999999999999999999999998775556665544433322


Q ss_pred             ccCCCCCcchhhhhhccCCcccccccccCcceEEEEEE-ECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461        458 LLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVC-LKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT  535 (535)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~-~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~  535 (535)
                      +. ..+. .+.+.  ...+.    .....+.||+||++ +++|++|||+|++|++|+|||+.+++||++++|++||+++
T Consensus       436 ~~-~~~~-~~~~~--~~~~~----~~~~~~~g~vKli~~~~~t~~ILGa~ivG~~A~ElI~~~alAi~~~~t~~dl~~~  506 (542)
T 4b1b_A          436 SA-VHRQ-KHIRA--QKDEY----DLDVSSTCLAKLVCLKNEDNRVIGFHYVGPNAGEVTQGMALALRLKVKKKDFDNC  506 (542)
T ss_dssp             ------------------------------CCCEEEEEETTTTTBEEEEEEESTTHHHHHHHHHHHHHTCCBHHHHHHC
T ss_pred             hh-hhhh-hhhhc--ccccc----cccCCCceEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcc
Confidence            21 1000 00000  00000    01125689999995 5679999999999999999999999999999999999764

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=100.00  E-value=6.4e-61  Score=514.10  Aligned_cols=426  Identities=23%  Similarity=0.337  Sum_probs=353.3

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCC--------ccccccc---cccc----ccccccchhhccc--ccccc
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGS--------HLSFRKK---RRLY----YPVAMSDLELEQD--STSAL  150 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~--------~~~~~~~---~l~~----~~~~i~~~~~~~~--~~~~~  150 (535)
                      .++|+|||+|++|+.+|+.+...+.+|+|||+.+        .+++...   -+|.    .............  +....
T Consensus         6 ~~DvvVIG~G~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~gciPsk~l~~~~~~~~~~~~~~~~g~~~~   85 (488)
T 3dgz_A            6 SFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLMHQAALLGGMIRDAHHYGWEVA   85 (488)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTSCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEEecccccccccCCcCCeecccCCcccHHHHHHHHHHHHHHHHHhcCcccC
Confidence            4799999999999999999988899999999732        2222110   0111    0000000000111  11111


Q ss_pred             cccccCHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEce-----eEEEcceEEEeeCceecC-C-C
Q psy14461        151 NVTIRNWNAATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSN-----RSVTGFNFLLAVERRCLP-E-P  223 (535)
Q Consensus       151 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~-----~~~~~d~lViATGs~p~~-~-i  223 (535)
                      ....++|..+..+.+.++..+...+...++..+|+++.+++.+.+++++.+..     .++.||+||||||++|.. + +
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~g~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~p~~i  165 (488)
T 3dgz_A           86 QPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVDEHTVRGVDKGGKATLLSAEHIVIATGGRPRYPTQV  165 (488)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECCEEEESSSSEEEEECTTSCEEEEEEEEEEECCCEEECCCSSC
T ss_pred             CcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCeEEEEeCCCceEEEECCEEEEcCCCCCCCCCCC
Confidence            13467999999999999999988888888999999999999999999888842     579999999999999999 8 9


Q ss_pred             CC--CceechhhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEcCcCCccCcHHHHHHHHHhhhcCCeEE-cc
Q psy14461        224 RN--SALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVSI-QC  300 (535)
Q Consensus       224 ~G--~~v~~~~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~i-~~  300 (535)
                      ||  +.++++++++.+...+++++|||+|++|+|+|..|+++|.+||++++..+++.+++++.+.+.+.|+++||++ ++
T Consensus       166 ~G~~~~~~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~l~~~d~~~~~~l~~~l~~~gv~~~~~  245 (488)
T 3dgz_A          166 KGALEYGITSDDIFWLKESPGKTLVVGASYVALECAGFLTGIGLDTTVMMRSIPLRGFDQQMSSLVTEHMESHGTQFLKG  245 (488)
T ss_dssp             BTHHHHCBCHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSSTTSCHHHHHHHHHHHHHTTCEEEET
T ss_pred             CCcccccCcHHHHHhhhhcCCeEEEECCCHHHHHHHHHHHHcCCceEEEEcCcccccCCHHHHHHHHHHHHHCCCEEEeC
Confidence            99  5678999999988899999999999999999999999999999999955788999999999999999999999 99


Q ss_pred             eEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeec-CCCceEcCCCCCcCCCCEEEeC
Q psy14461        301 CVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIK-KKSYVVCNEKDQTSVGNIFAVG  379 (535)
Q Consensus       301 ~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~-~~G~i~vd~~~~T~~~~IyA~G  379 (535)
                      +.+++++..+++.+.+++.+..+|++.++++|.|++|+|++||+++++++..+++++ ++|+|.||+++||+.|+|||+|
T Consensus       246 ~~v~~i~~~~~~~~~v~~~~~~~g~~~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~~G~i~vd~~~~t~~~~IyA~G  325 (488)
T 3dgz_A          246 CVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQKIIVDAQEATSVPHIYAIG  325 (488)
T ss_dssp             EEEEEEEECTTSCEEEEEEETTTTEEEEEEESEEEECSCEEESCGGGTGGGGTCCBCSSSCCBCCCTTSBCSSTTEEECG
T ss_pred             CEEEEEEEcCCCcEEEEEEeCCCCeeEEEECCEEEEcccCCcccCcCCccccCcEecCCCCeEeECCCCccCCCCEEEeE
Confidence            999999875345567777643346655689999999999999999877788999998 7999999999999999999999


Q ss_pred             CcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCccccc
Q psy14461        380 GIVHGKPNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLL  459 (535)
Q Consensus       380 D~~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~  459 (535)
                      ||+.+.+.+++.|.+||++||.||++......++..+|+++|++|++++||+||+||+++++...+.+....|.++.+..
T Consensus       326 D~~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~  405 (488)
T 3dgz_A          326 DVAEGRPELTPTAIKAGKLLAQRLFGKSSTLMDYSNVPTTVFTPLEYGCVGLSEEEAVALHGQEHVEVYHAYYKPLEFTV  405 (488)
T ss_dssp             GGBTTCCCCHHHHHHHHHHHHHHHHSCCCCCCCCTTCCEEECSSSEEEEEECCHHHHHHHHCGGGEEEEEEECCCHHHHH
T ss_pred             EecCCCCcchhHHHHHHHHHHHHHcCCCCccCCCCCCCEEEECCCCeEEEeCCHHHHHhhCCCCcEEEEEccccchhhhh
Confidence            99745688999999999999999999776667888999999999999999999999998755336777776676555443


Q ss_pred             CCCCCcchhhhhhccCCcccccccccCcceEEEEEEE-CCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461        460 DPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCL-KGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT  535 (535)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~-~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~  535 (535)
                       +...                     ++.||+||++| ++|++|||+|++|++|.|+|+.+++||++++|++||.++
T Consensus       406 -~~~~---------------------~~~g~~k~i~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~  460 (488)
T 3dgz_A          406 -ADRD---------------------ASQCYIKMVCMREPPQLVLGLHFLGPNAGEVTQGFALGIKCGASYAQVMQT  460 (488)
T ss_dssp             -TTCC---------------------CTTCEEEEEEESSTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTS
T ss_pred             -hccC---------------------CCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcc
Confidence             2211                     36899999999 589999999999999999999999999999999999874

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=100.00  E-value=1.9e-60  Score=522.89  Aligned_cols=468  Identities=25%  Similarity=0.375  Sum_probs=374.1

Q ss_pred             CCChhHHHHhhhcCCcEEEEeCCCchhhHHHHHHHHHhcCCcc-------------------------------------
Q psy14461         44 FETPPAYISRLSYENRILIFTHAVLREENARAERYLNARGDRF-------------------------------------   86 (535)
Q Consensus        44 ~~~l~~~~~~~i~~~~v~v~~k~~cp~~~~~~k~~~~~~~~~~-------------------------------------   86 (535)
                      .++.+..+..++.+++|++|++++|| +|.++++++.+.+.++                                     
T Consensus         4 ~~~~~~~v~~~i~~~~v~vy~~~~Cp-~C~~~k~~L~~~~i~~~~~dv~~~~~~~~~~~~l~~~~g~~tvP~v~i~g~~i   82 (598)
T 2x8g_A            4 ADGTSQWLRKTVDSAAVILFSKTTCP-YCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCLASFSKIETVPQMFVRGKFI   82 (598)
T ss_dssp             --CHHHHHHHHHHHCSEEEEECTTCH-HHHHHHHHHHHTTCCCEEEEGGGSTTHHHHHHHTHHHHSCCCSCEEEETTEEE
T ss_pred             CccHHHHHHHHhccCCEEEEECCCCh-hHHHHHHHHHHCCCCcEEEEcccCcchHHHHHHHHHHhCCceeCEEEECCEEE
Confidence            45666788999999999999999999 9999998887544311                                     


Q ss_pred             -----------------------eEEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCc--------cccc---cccccc
Q psy14461         87 -----------------------AVLYLDRIGDEGILLEEELKRQTNQRRDELQERGSH--------LSFR---KKRRLY  132 (535)
Q Consensus        87 -----------------------~~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~--------~~~~---~~~l~~  132 (535)
                                             ..++|+|||+|++|+++|..+...+.+|+|||+...        +++.   .+.+|.
T Consensus        83 gG~~~l~~~~~~g~L~~~l~~~~~~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~~~~~~~g~~~~~GG~~~~~g~iP~  162 (598)
T 2x8g_A           83 GDSQTVLKYYSNDELAGIVNESKYDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYVEPTPIGTTWGLGGTCVNVGCIPK  162 (598)
T ss_dssp             ECHHHHHHHHHTTCHHHHHHCCSSSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTHHHHHHSHHHH
T ss_pred             EeeehhhhhhhcCcchhhcccccccccEEEECCCccHHHHHHHHHhCCCeEEEEeccCCcccccccccCceEeccCCCch
Confidence                                   135899999999999999998888999999997421        1111   001111


Q ss_pred             ccc----cccchhhccc--cccccc-ccccCHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEc---
Q psy14461        133 YPV----AMSDLELEQD--STSALN-VTIRNWNAATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLS---  202 (535)
Q Consensus       133 ~~~----~i~~~~~~~~--~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~---  202 (535)
                      ...    .+........  +..... ....+|.++.++.+..+..+...+...++..+|+++.+.+.+.+.+++.+.   
T Consensus       163 ~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~~~~v~v~~~~  242 (598)
T 2x8g_A          163 KLMHQAGLLSHALEDAEHFGWSLDRSKISHNWSTMVEGVQSHIGSLNWGYKVALRDNQVTYLNAKGRLISPHEVQITDKN  242 (598)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCCCGGGCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETTEEEEECTT
T ss_pred             HHHHHHHHHHHHHhhHHhCCccccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCCCEEEEEeCC
Confidence            100    0000000000  111001 136789999999998888888777777888899999999988888888873   


Q ss_pred             e--eEEEcceEEEeeCceecC-CCCC--CceechhhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEcCcCCc
Q psy14461        203 N--RSVTGFNFLLAVERRCLP-EPRN--SALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLK  277 (535)
Q Consensus       203 ~--~~~~~d~lViATGs~p~~-~i~G--~~v~~~~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~l~  277 (535)
                      +  .++.||+||||||++|+. ++||  ..++++++++.+...+++++|||||++|+|+|..|+++|.+||++++..+++
T Consensus       243 g~~~~~~~d~lviAtGs~p~~p~i~G~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~l~  322 (598)
T 2x8g_A          243 QKVSTITGNKIILATGERPKYPEIPGAVEYGITSDDLFSLPYFPGKTLVIGASYVALECAGFLASLGGDVTVMVRSILLR  322 (598)
T ss_dssp             CCEEEEEEEEEEECCCEEECCCSSTTHHHHCEEHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSST
T ss_pred             CCeEEEEeCEEEEeCCCCCCCCCCCCcccceEcHHHHhhCccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCcCcC
Confidence            2  469999999999999999 8999  4567888888887788999999999999999999999999999999976778


Q ss_pred             cCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEe-----CC---CcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCC
Q psy14461        278 HFDQEMVRILLSSLTKAGVSI-QCCVIEKVISS-----FD---GMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALN  348 (535)
Q Consensus       278 ~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~-----~~---~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~  348 (535)
                      .+++++.+.+.+.|++.||++ +++.++++...     .+   +.+.+++.. .+|++..+++|.|++|+|++||++++.
T Consensus       323 ~~d~~~~~~~~~~l~~~gv~i~~~~~v~~v~~~~~~~~~~~~~~~~~v~~~~-~~g~~~~~~~D~vi~a~G~~p~~~~l~  401 (598)
T 2x8g_A          323 GFDQQMAEKVGDYMENHGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHY-TDGKKFEEEFETVIFAVGREPQLSKVL  401 (598)
T ss_dssp             TSCHHHHHHHHHHHHHTTCEEEETEEEEEEEEEECCBTTTTBCCEEEEEEEE-TTSCEEEEEESEEEECSCEEECGGGTB
T ss_pred             cCCHHHHHHHHHHHHhCCCEEEECCeEEEEEeccccccccCCCceEEEEEEe-CCCcEEeccCCEEEEEeCCccccCccC
Confidence            899999999999999999999 99988888642     12   444454322 367744566999999999999998876


Q ss_pred             ccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceee
Q psy14461        349 LHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGT  428 (535)
Q Consensus       349 l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~  428 (535)
                      ++.+|++++++|+|.||++++|+.|+|||+|||+.+.+.+++.|.+||++||.||++......++..+|+++|++|++++
T Consensus       402 ~~~~gl~~~~~G~i~vd~~~~ts~~~VyA~GD~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~~~~~~~~~a~  481 (598)
T 2x8g_A          402 CETVGVKLDKNGRVVCTDDEQTTVSNVYAIGDINAGKPQLTPVAIQAGRYLARRLFAGATELTDYSNVATTVFTPLEYGA  481 (598)
T ss_dssp             CGGGCCCBCTTSCBCCCTTSBCSSTTEEECGGGBTTSCCCHHHHHHHHHHHHHHHHHCCCCCCCCTTCCEEECSSSCEEE
T ss_pred             chhcCceECCCCcEEeCCCCcCCCCCEEEEeeecCCCCccHHHHHHhHHHHHHHHhcCCCcccCCCCCcEEEECCCceEE
Confidence            67889999989999999999999999999999953668899999999999999999866566788899999999999999


Q ss_pred             ecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcchhhhhhccCCcccccccccCcceEEEEEEEC-CCCeEEEEEE
Q psy14461        429 VGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLK-GGERVLGIHV  507 (535)
Q Consensus       429 vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~-~~~~ilGa~~  507 (535)
                      ||+||+||++.++..++++....+.+..+.. ..+.                     .+.+|+||++++ ++++|||+|+
T Consensus       482 vGl~e~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~---------------------~~~~~~kli~~~~~~~~ilG~~~  539 (598)
T 2x8g_A          482 CGLSEEDAIEKYGDKDIEVYHSNFKPLEWTV-AHRE---------------------DNVCYMKLVCRKSDNMRVLGLHV  539 (598)
T ss_dssp             EECCHHHHHHHHCGGGEEEEEEEECCTHHHH-TTCC---------------------SSCEEEEEEEETTTTTEEEEEEE
T ss_pred             EeCCHHHHHhhCCCCcEEEEEEeccchhHHh-hcCC---------------------CCcEEEEEEEecCCCCEEEEEEE
Confidence            9999999998755335888777776655543 2211                     357999999995 6999999999


Q ss_pred             EcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461        508 IGQNVAGMIFGYSLALRKFLTKAELDGT  535 (535)
Q Consensus       508 ~G~~a~e~i~~~~~~i~~~~t~~~l~~~  535 (535)
                      +|++|.|+|+.+++||++++|++||.++
T Consensus       540 ~g~~a~~~i~~~~~ai~~~~t~~~l~~~  567 (598)
T 2x8g_A          540 LGPNAGEITQGYAVAIKMGATKADFDRT  567 (598)
T ss_dssp             ESTTHHHHHHHHHHHHHTTCBHHHHHHS
T ss_pred             ECCCHHHHHHHHHHHHHcCCCHHHHhhc
Confidence            9999999999999999999999999753

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=100.00  E-value=1.9e-60  Score=509.93  Aligned_cols=423  Identities=27%  Similarity=0.357  Sum_probs=351.4

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCc---------ccccccc----ccc----ccccccchhhccc--cccc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSH---------LSFRKKR----RLY----YPVAMSDLELEQD--STSA  149 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~---------~~~~~~~----l~~----~~~~i~~~~~~~~--~~~~  149 (535)
                      ++|+|||+|++|+.+|+++...+.+|+|||+.+.         +++. |.    .|.    .+...........  +...
T Consensus        10 ~DvvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~~GG~-c~~~gciPsk~l~~~~~~~~~~~~~~~~g~~~   88 (483)
T 3dgh_A           10 YDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTKWGVGGT-CVNVGCIPKKLMHQASLLGEAVHEAAAYGWNV   88 (483)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTTTCCCCSSCH-HHHHSHHHHHHHHHHHHHHHHHHHHHHTTBCC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCEEEEEEeccccccccccCCcCCe-ecccCchhhHHHHHHHHHHHHHHHHHhcCccc
Confidence            7899999999999999999888999999995321         2211 10    110    0000000000011  1111


Q ss_pred             ccccccCHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEc---e-eEEEcceEEEeeCceecC-CCC
Q psy14461        150 LNVTIRNWNAATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLS---N-RSVTGFNFLLAVERRCLP-EPR  224 (535)
Q Consensus       150 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~---~-~~~~~d~lViATGs~p~~-~i~  224 (535)
                      .....++|..+..+.+..++.+...+...++..+|+++.+.+.+.+++++.+.   + .++.||+||||||++|.. ++|
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~g~~~~~~d~lviATGs~p~~p~i~  168 (483)
T 3dgh_A           89 DDKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVEYINGLGSFVDSHTLLAKLKSGERTITAQTFVIAVGGRPRYPDIP  168 (483)
T ss_dssp             CCCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETTEEEEECTTCCEEEEEEEEEECCCEEECCCSST
T ss_pred             CCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEccCCEEEEEeCCCeEEEEcCEEEEeCCCCcCCCCCC
Confidence            12346799999999999999888888888889999999999999999888883   2 479999999999999999 899


Q ss_pred             C--CceechhhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEcCcCCccCcHHHHHHHHHhhhcCCeEE-cce
Q psy14461        225 N--SALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVSI-QCC  301 (535)
Q Consensus       225 G--~~v~~~~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~  301 (535)
                      |  ...+++++++.+...+++++|||+|++|+|+|..|+++|.+||+++++.+++.+++++.+.+.+.|+++||++ +++
T Consensus       169 G~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~l~~~d~~~~~~l~~~l~~~Gv~i~~~~  248 (483)
T 3dgh_A          169 GAVEYGITSDDLFSLDREPGKTLVVGAGYIGLECAGFLKGLGYEPTVMVRSIVLRGFDQQMAELVAASMEERGIPFLRKT  248 (483)
T ss_dssp             THHHHCBCHHHHTTCSSCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCSSTTSCHHHHHHHHHHHHHTTCCEEETE
T ss_pred             CcccccCcHHHHhhhhhcCCcEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCcccCHHHHHHHHHHHHhCCCEEEeCC
Confidence            9  5678899999988889999999999999999999999999999999976788999999999999999999999 999


Q ss_pred             EEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCc
Q psy14461        302 VIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGI  381 (535)
Q Consensus       302 ~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~  381 (535)
                      .+++++..+++.+.|++.+..+|+..++++|.|++|+|++|++++++++.+|+++++ |+|.||++++|+.|+|||+|||
T Consensus       249 ~v~~i~~~~~~~~~v~~~~~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~-G~i~vd~~~~t~~~~IyA~GD~  327 (483)
T 3dgh_A          249 VPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQK-DKIPVDSQEATNVANIYAVGDI  327 (483)
T ss_dssp             EEEEEEECTTSCEEEEEEETTTCCEEEEEESEEEECSCEEECCGGGTGGGTTCCCBT-TBBCCCTTCBCSSTTEEECSTT
T ss_pred             EEEEEEEcCCCcEEEEEecCCCCceeEEEcCEEEECcccccCcCcCCchhcCccccC-CEEEECcCCccCCCCEEEEEcc
Confidence            999998754455677776433355568999999999999999998877889999998 9999999999999999999999


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCC
Q psy14461        382 VHGKPNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDP  461 (535)
Q Consensus       382 ~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~  461 (535)
                      +.+.+.+++.|.+||++||+||+|......++..+|+++|++|++++||+||+||+++++...+.+....|.+..+.. +
T Consensus       328 ~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~-~  406 (483)
T 3dgh_A          328 IYGKPELTPVAVLAGRLLARRLYGGSTQRMDYKDVATTVFTPLEYACVGLSEEDAVKQFGADEIEVFHGYYKPTEFFI-P  406 (483)
T ss_dssp             BTTSCCCHHHHHHHHHHHHHHHHSCCCCCCCCTTCCEEECSSSEEEEEECCHHHHHHHHCGGGEEEEEEECCCGGGTT-T
T ss_pred             cCCCCccHHHHHHHHHHHHHHHcCCCCCcCCCCCCCEEEECCCccEEEeCCHHHHHhhCCCCCEEEEEEeecchhhhh-h
Confidence            745688999999999999999999776677889999999999999999999999998755335777777776654443 2


Q ss_pred             CCCcchhhhhhccCCcccccccccCcceEEEEEEECC-CCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461        462 LLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKG-GERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT  535 (535)
Q Consensus       462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~-~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~  535 (535)
                      ..                     +.+.||+||++|++ |++|||+|++|++|.|+|+.+++||++++|++||.++
T Consensus       407 ~~---------------------~~~~~~~k~i~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~  460 (483)
T 3dgh_A          407 QK---------------------SVRYCYLKAVAERHGDQRVYGLHYIGPVAGEVIQGFAAALKSGLTINTLINT  460 (483)
T ss_dssp             TC---------------------CCTTCEEEEEEESSTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTS
T ss_pred             cc---------------------CCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhc
Confidence            21                     14689999999986 8999999999999999999999999999999999874

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=100.00  E-value=1.9e-60  Score=513.60  Aligned_cols=424  Identities=25%  Similarity=0.340  Sum_probs=349.5

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCC--------ccccccc---cccc----ccccccchhhccc--cccccc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGS--------HLSFRKK---RRLY----YPVAMSDLELEQD--STSALN  151 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~--------~~~~~~~---~l~~----~~~~i~~~~~~~~--~~~~~~  151 (535)
                      ++|+|||+|++|+.+|+++...+.+|+|||+.+        .+++...   -+|.    .+...........  +.....
T Consensus        33 ~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~GciPsk~l~~~~~~~~~~~~~~~~g~~~~~  112 (519)
T 3qfa_A           33 YDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWKVEE  112 (519)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTBCCCS
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccccCCCcccccCCcCccchHHHHHHHHHHHHHHHHHhcCcccCC
Confidence            789999999999999999988899999999854        2222100   0110    0000000000011  111112


Q ss_pred             ccccCHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEce-----eEEEcceEEEeeCceecC-CCCC
Q psy14461        152 VTIRNWNAATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSN-----RSVTGFNFLLAVERRCLP-EPRN  225 (535)
Q Consensus       152 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~-----~~~~~d~lViATGs~p~~-~i~G  225 (535)
                      ...++|..+..+++++++.+...+...++..+|+++.+.+.+.+++++.+..     .++.||+||||||++|+. ++||
T Consensus       113 ~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~gV~~i~g~a~~~d~~~v~v~~~~g~~~~i~~d~lViATGs~p~~p~i~G  192 (519)
T 3qfa_A          113 TVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRYLGIPG  192 (519)
T ss_dssp             SCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETTEEEEECTTCCCCEEEEEEEEECCCEEECCCCCTT
T ss_pred             cCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeCCEEEEEcCCCCEEEEECCEEEEECCCCcCCCCCCC
Confidence            3478999999999999999988888888999999999999999999888842     379999999999999999 9999


Q ss_pred             --CceechhhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEcCcCCccCcHHHHHHHHHhhhcCCeEE-cceE
Q psy14461        226 --SALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVSI-QCCV  302 (535)
Q Consensus       226 --~~v~~~~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~  302 (535)
                        +.++++++++.+...+++++|||+|++|+|+|..|+++|.+||+++++.+++.+++++.+.+.+.|+++||++ +++.
T Consensus       193 ~~~~~~t~~~~~~l~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~l~~~d~~~~~~~~~~l~~~GV~v~~~~~  272 (519)
T 3qfa_A          193 DKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQFV  272 (519)
T ss_dssp             HHHHCBCHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSSTTSCHHHHHHHHHHHHHTTCEEEESEE
T ss_pred             ccCceEcHHHHhhhhhcCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecccccccCCHHHHHHHHHHHHHCCCEEEeCCe
Confidence              5678999999998899999999999999999999999999999999977889999999999999999999999 9998


Q ss_pred             EEEEEEeCC---CcEEEEEecCCCC-CceEEEcCEEEEccCCCCCCCCCCccccCeeec-CCCceEcCCCCCcCCCCEEE
Q psy14461        303 IEKVISSFD---GMKGVRGFHPESK-EPFADVFKTVVNAMEKKFDFAALNLHHIGVDIK-KKSYVVCNEKDQTSVGNIFA  377 (535)
Q Consensus       303 v~~i~~~~~---~~~~v~~~~~~~G-~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~-~~G~i~vd~~~~T~~~~IyA  377 (535)
                      ++++...++   +.+.+++.. .+| +..++++|.|++|+|++||+++++++.+|++++ ++|+|.||+++||+.|+|||
T Consensus       273 v~~v~~~~~~~~~~~~v~~~~-~~g~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~~G~I~Vd~~~~Ts~~~IyA  351 (519)
T 3qfa_A          273 PIKVEQIEAGTPGRLRVVAQS-TNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNVPYIYA  351 (519)
T ss_dssp             EEEEEEEECCTTCEEEEEEEE-SSSSCEEEEEESEEEECSCEEESCSSSCSTTTTCCCCTTTCCBCCCTTSBCSSTTEEE
T ss_pred             EEEEEEccCCCCceEEEEEEE-CCCcEEEEEECCEEEEecCCcccCCCCChhhcCcEEcCCCCeEeeCCCCccCCCCEEE
Confidence            888875422   345565543 244 335689999999999999999877788999998 68999999999999999999


Q ss_pred             eCCcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCccc
Q psy14461        378 VGGIVHGKPNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDN  457 (535)
Q Consensus       378 ~GD~~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~  457 (535)
                      +|||+.+.+++++.|..||++||+||++......++..+|+++|++|++++||+||+||+++++..++.+....|.+..+
T Consensus       352 ~GD~~~g~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~~~~~~~~~~~~~~~~~~~  431 (519)
T 3qfa_A          352 IGDILEDKVELTPVAIQAGRLLAQRLYAGSTVKCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVYHSYFWPLEW  431 (519)
T ss_dssp             CGGGBSSSCCCHHHHHHHHHHHHHHHHSCCCCCCCCTTCCEEECSSSCEEEEECCHHHHHHHHCGGGEEEEEEEECCHHH
T ss_pred             EEeccCCCCccHHHHHHHHHHHHHHHcCCCCccCCCCcCcEEEECCCceEEecCCHHHHHhhCCCCCEEEEEEeccchhh
Confidence            99998456889999999999999999987766778999999999999999999999999987543357777777766555


Q ss_pred             ccCCCCCcchhhhhhccCCcccccccccCcceEEEEEEEC-CCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461        458 LLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLK-GGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT  535 (535)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~-~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~  535 (535)
                      .. ..+.                     .+.||+||++|+ +|++|||+|++|++|.|+|+.+++||++++|++||.++
T Consensus       432 ~~-~~~~---------------------~~~g~~Kli~~~~~~~~ilGa~i~g~~a~e~i~~~~~ai~~~~t~~~l~~~  488 (519)
T 3qfa_A          432 TI-PSRD---------------------NNKCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDST  488 (519)
T ss_dssp             HT-TTCC---------------------TTTEEEEEEEETTTTCEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHS
T ss_pred             hh-hccC---------------------CCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcc
Confidence            43 2211                     368999999997 58999999999999999999999999999999999753

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=100.00  E-value=1.9e-59  Score=501.48  Aligned_cols=423  Identities=24%  Similarity=0.348  Sum_probs=349.4

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccccc--c-ccc----ccccccchhhccccccc-ccccccCHHH
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKK--R-RLY----YPVAMSDLELEQDSTSA-LNVTIRNWNA  159 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~--~-l~~----~~~~i~~~~~~~~~~~~-~~~~~~~~~~  159 (535)
                      .++|+|||+|++|+.+|+.+...+.+|+|||++. +++...  + .|.    ..............+.. .....++|..
T Consensus        20 ~~dVvIIGgG~aGl~aA~~la~~G~~V~liE~~~-~GG~~~~~gc~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   98 (478)
T 3dk9_A           20 SYDYLVIGGGSGGLASARRAAELGARAAVVESHK-LGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFNWRV   98 (478)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTSCCCCCCCCHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCC-CCCcccccCccchHHHHHHHHHHHHHHHHHhcCccCCCCccCHHH
Confidence            4689999999999999999988899999999874 322100  0 110    00000000000001100 1134678999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCC--EEEEceeEEEcceEEEeeCceecC----CCCC-Cceechh
Q psy14461        160 ATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPH--TIKLSNRSVTGFNFLLAVERRCLP----EPRN-SALISAD  232 (535)
Q Consensus       160 l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~--~v~~~~~~~~~d~lViATGs~p~~----~i~G-~~v~~~~  232 (535)
                      +..+.+.+.+.+...+...++..+|+++.+++.+.+..  ++..++.++.||+||||||++|..    ++|| +.+++++
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~g~~~~~d~lviAtG~~p~~p~~~~i~G~~~~~~~~  178 (478)
T 3dk9_A           99 IKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSGKKYTAPHILIATGGMPSTPHESQIPGASLGITSD  178 (478)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEECSCSSCEEEETTEEEECSCEEECCCEEECCCCTTTSTTGGGSBCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEeeCCeEEEEECCEEEEeeEEEEccCCCCCCCCcCCCCCCceeEchH
Confidence            99999999999888888888999999999999887754  566666789999999999999875    3677 6678899


Q ss_pred             hHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeC
Q psy14461        233 DLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSF  310 (535)
Q Consensus       233 ~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~  310 (535)
                      +++.+...+++++|||||++|+|+|..|+++|.+||++++ +++++.+++++.+.+.+.|+++||++ +++.+++++..+
T Consensus       179 ~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~  258 (478)
T 3dk9_A          179 GFFQLEELPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQVKEVKKTL  258 (478)
T ss_dssp             HHTTCCSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEETTEEEEEEEECS
T ss_pred             HhhchhhcCccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcC
Confidence            9999988999999999999999999999999999999999 99999999999999999999999999 999999998763


Q ss_pred             CC-cEEEEEecCCCCCc--eEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCCC
Q psy14461        311 DG-MKGVRGFHPESKEP--FADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPN  387 (535)
Q Consensus       311 ~~-~~~v~~~~~~~G~~--~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~~  387 (535)
                      ++ .+.+.+.+..+|++  .++++|.|++|+|++||++.+.++.+|++++++|+|.||++++|+.|+|||+|||+ +.++
T Consensus       259 ~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~IyA~GD~~-~~~~  337 (478)
T 3dk9_A          259 SGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAVGDVC-GKAL  337 (478)
T ss_dssp             SSEEEEEEECCTTSCCEEEEEEEESEEEECSCEEESCTTSCGGGGTCCBCTTCCBCCCTTCBCSSTTEEECGGGG-CSSC
T ss_pred             CCcEEEEEEccCCCCcccceEEEcCEEEEeeccccCCCCCCchhcCCeeCCCCCEeeCCCcccCCCCEEEEEecC-CCCc
Confidence            34 35666643112332  47999999999999999997767889999999999999999999999999999999 8999


Q ss_pred             cHHHHHHHHHHHHHHHhCC-CCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcc
Q psy14461        388 NASMAAISARLIIERLYGM-QDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPEN  466 (535)
Q Consensus       388 ~~~~A~~~g~~aa~~i~g~-~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  466 (535)
                      +++.|.+||++||+||++. .....++..+|+++|++|++++||+||+||+++++..++.+...++....++. ..    
T Consensus       338 ~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~-~~----  412 (478)
T 3dk9_A          338 LTPVAIAAGRKLAHRLFEYKEDSKLDYNNIPTVVFSHPPIGTVGLTEDEAIHKYGIENVKTYSTSFTPMYHAV-TK----  412 (478)
T ss_dssp             CHHHHHHHHHHHHHHHHSCCTTCCCCCTTCCEEECCSSCEEEEECCHHHHHHHHCGGGEEEEEEEECCGGGGG-CS----
T ss_pred             cHhHHHHHHHHHHHHHcCCCCcccCCCCCCCeEEECCCceEEeeCCHHHHHhhCCCccEEEEEeecCcchhhh-hc----
Confidence            9999999999999999987 34567888999999999999999999999999865335777777777666554 21    


Q ss_pred             hhhhhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461        467 FVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT  535 (535)
Q Consensus       467 ~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~  535 (535)
                                        +++.||+||++|++|++|||+|++|++|.|+|+.+++||++++|++||.++
T Consensus       413 ------------------~~~~g~~k~i~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~  463 (478)
T 3dk9_A          413 ------------------RKTKCVMKMVCANKEEKVVGIHMQGLGCDEMLQGFAVAVKMGATKADFDNT  463 (478)
T ss_dssp             ------------------SCCCEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTS
T ss_pred             ------------------CCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhc
Confidence                              257899999999999999999999999999999999999999999999874

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=100.00  E-value=5.5e-60  Score=507.17  Aligned_cols=417  Identities=22%  Similarity=0.248  Sum_probs=349.5

Q ss_pred             EEEEEeeCCccHHHHHHHHHhh-CCCeEEEEec--------CCccccccc--c-cc----cccccccchhhccccccc-c
Q psy14461         88 VLYLDRIGDEGILLEEELKRQT-NQRRDELQER--------GSHLSFRKK--R-RL----YYPVAMSDLELEQDSTSA-L  150 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~-~~~~V~lie~--------~~~~~~~~~--~-l~----~~~~~i~~~~~~~~~~~~-~  150 (535)
                      .++|+|||+|++|+.+|.++.. .+.+|+|||+        ...+++...  + +|    .+...+.......+.+.. .
T Consensus         7 ~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~g~~~   86 (495)
T 2wpf_A            7 AFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDVQTSHGPPFYAALGGTCVNVGCVPKKLMVTGAQYMDHLRESAGFGWEF   86 (495)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBCBTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTTEEC
T ss_pred             ccCEEEECCChhHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCeeecCCcchHHHHHHHHHHHHHHhHHHhcCccc
Confidence            4789999999999999998888 8999999992        333322100  0 11    100000000000111110 1


Q ss_pred             ccc--ccCHHHHHHHHHHHHHHHHHHHHHHHHhc-CcEEEEeEEEEecCCEEEEc---------eeEEEcceEEEeeCce
Q psy14461        151 NVT--IRNWNAATKLIKRFCIRAKNDSMRELKAL-GIDIVRTAAAFTNPHTIKLS---------NRSVTGFNFLLAVERR  218 (535)
Q Consensus       151 ~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-gV~~~~g~~~~~~~~~v~~~---------~~~~~~d~lViATGs~  218 (535)
                      ...  .++|..+.++.++.++++...+...++.. +|+++.+++.++++++|.+.         +.++.||+||||||++
T Consensus        87 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g~~~~i~~~~v~v~~~~~~~~~~~~~~~~d~lViATGs~  166 (495)
T 2wpf_A           87 DGSSVKANWKKLIAAKNEAVLDINKSYEGMFNDTEGLDFFLGWGSLESKNVVVVRETADPKSAVKERLQADHILLATGSW  166 (495)
T ss_dssp             CGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEEEESEEEEEETTEEEEESSSSTTSCEEEEEEEEEEEECCCEE
T ss_pred             CCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeEEEEeeCCEEEEeecCCccCCCCeEEEcCEEEEeCCCC
Confidence            122  67899999999999998888888888888 99999999999999999986         5679999999999999


Q ss_pred             ecC-CCCC-CceechhhHHhccCCCCcEEEECCChHHHHHHHHHHhC---CCcEEEEEc-CcCCccCcHHHHHHHHHhhh
Q psy14461        219 CLP-EPRN-SALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFL---GVPVTLVYS-RRLLKHFDQEMVRILLSSLT  292 (535)
Q Consensus       219 p~~-~i~G-~~v~~~~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~---g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~  292 (535)
                      |.. ++|| +.++++++++.+...+++++|||+|++|+|+|..|+++   |.+||++++ +++++.+++++.+.+.+.++
T Consensus       167 p~~p~i~G~~~~~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~  246 (495)
T 2wpf_A          167 PQMPAIPGIEHCISSNEAFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLILRGFDETIREEVTKQLT  246 (495)
T ss_dssp             ECCCCCTTGGGCEEHHHHTTCSSCCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSCTTSCHHHHHHHHHHHH
T ss_pred             cCCCCCCCccccccHHHHHhhhhcCCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCccccccCHHHHHHHHHHHH
Confidence            999 8999 77889999999888899999999999999999999999   999999999 99999999999999999999


Q ss_pred             cCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcC
Q psy14461        293 KAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTS  371 (535)
Q Consensus       293 ~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~  371 (535)
                      ++||++ ++++|++++.++++.+.|++.   +|+  ++++|.|++|+|++||++++.++.+|++++++|+|.||+++||+
T Consensus       247 ~~GV~i~~~~~v~~i~~~~~~~~~v~~~---~G~--~i~~D~vv~a~G~~p~~~~L~l~~~gl~~~~~G~i~Vd~~~~t~  321 (495)
T 2wpf_A          247 ANGIEIMTNENPAKVSLNTDGSKHVTFE---SGK--TLDVDVVMMAIGRIPRTNDLQLGNVGVKLTPKGGVQVDEFSRTN  321 (495)
T ss_dssp             HTTCEEEESCCEEEEEECTTSCEEEEET---TSC--EEEESEEEECSCEEECCGGGTGGGTTCCBCTTSSBCCCTTCBCS
T ss_pred             hCCCEEEeCCEEEEEEEcCCceEEEEEC---CCc--EEEcCEEEECCCCcccccccchhhcCccCCCCCCEEECCCCccC
Confidence            999999 999999998753334667773   676  79999999999999999866568889999989999999999999


Q ss_pred             CCCEEEeCCcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEe
Q psy14461        372 VGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSS  451 (535)
Q Consensus       372 ~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~  451 (535)
                      .|+|||+|||+ +.+.+++.|.+||++||.||++......++..+|+++|++|++++||+||+||++.+.  ++.+....
T Consensus       322 ~~~IyA~GD~~-~~~~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~~~--~~~v~~~~  398 (495)
T 2wpf_A          322 VPNIYAIGDIT-DRLMLTPVAINEGAALVDTVFGNKPRKTDHTRVASAVFSIPPIGTCGLIEEVAAKEFE--KVAVYMSS  398 (495)
T ss_dssp             STTEEECGGGG-CSCCCHHHHHHHHHHHHHHHHSSCCCCCCCSSCEEEECCSSCEEEEECCHHHHHHHSS--EEEEEEEE
T ss_pred             CCCEEEEeccC-CCccCHHHHHHHHHHHHHHhcCCCCCcCCCCCCCEEEECCCCeEEEeCCHHHHHhcCC--CEEEEEEe
Confidence            99999999999 7788999999999999999998665667888999999999999999999999998742  67777777


Q ss_pred             cCCcccccCCCCCcchhhhhhccCCcccccccccCcceE-EEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHH
Q psy14461        452 YPTFDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNNF-VKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKA  530 (535)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~  530 (535)
                      +....+++ +..                      ++.+| +||++|+++++|||+|++|++|.|+|+.+++||++++|++
T Consensus       399 ~~~~~~~~-~~~----------------------~~~~~~~klv~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~  455 (495)
T 2wpf_A          399 FTPLMHNI-SGS----------------------KYKKFVAKIVTNHSDGTVLGVHLLGDGAPEIIQAVGVCLRLNAKIS  455 (495)
T ss_dssp             ECCTHHHH-HSC----------------------TTCCEEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHH
T ss_pred             cCchhhhh-hcC----------------------CCcEEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHH
Confidence            76655443 221                      46899 9999999999999999999999999999999999999999


Q ss_pred             HHcCC
Q psy14461        531 ELDGT  535 (535)
Q Consensus       531 ~l~~~  535 (535)
                      ||.++
T Consensus       456 ~l~~~  460 (495)
T 2wpf_A          456 DFYNT  460 (495)
T ss_dssp             HHHHS
T ss_pred             HHhhc
Confidence            99753

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=100.00  E-value=1.1e-59  Score=499.48  Aligned_cols=417  Identities=23%  Similarity=0.327  Sum_probs=350.6

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccc----cccc----cccccchhh-cccccc-cccccccCH
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKR----RLYY----PVAMSDLEL-EQDSTS-ALNVTIRNW  157 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~----l~~~----~~~i~~~~~-~~~~~~-~~~~~~~~~  157 (535)
                      .++|+|||+|++|+.+|.++...+.+|+|||++. +++. |.    +|..    ......... ..+.+. ......++|
T Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~-~GG~-~~~~gciP~k~l~~~a~~~~~~~~~~~~~g~~~~~~~~~~   81 (450)
T 1ges_A            4 HYDYIAIGGGSGGIASINRAAMYGQKCALIEAKE-LGGT-CVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKFNW   81 (450)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSC-TTHH-HHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEEECH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEcCCC-CCCc-ccccCccChHHHHHHHHHHHHHHHHHHhcCccCCCCccCH
Confidence            3789999999999999999888899999999984 3221 11    1111    000000000 011110 011246789


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEceeEEEcceEEEeeCceecC-CCCC-CceechhhHH
Q psy14461        158 NAATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAVERRCLP-EPRN-SALISADDLF  235 (535)
Q Consensus       158 ~~l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~~~~~~d~lViATGs~p~~-~i~G-~~v~~~~~~~  235 (535)
                      ..+..+.+....++...+...++..+|+++.+++.+++.++|.+++.++.||+||||||++|.. ++|| +.++++++++
T Consensus        82 ~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~i~~~~v~~~g~~~~~d~lviAtGs~p~~p~i~g~~~~~~~~~~~  161 (450)
T 1ges_A           82 ETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDAKTLEVNGETITADHILIATGGRPSHPDIPGVEYGIDSDGFF  161 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEETTEEEETTEEEEEEEEEECCCEEECCCCSTTGGGSBCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCEEEECCEEEEeCEEEECCCCCCCCCCCCCccceecHHHhh
Confidence            9999999988888888888888889999999998888888898866789999999999999998 8999 7788999999


Q ss_pred             hccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCc
Q psy14461        236 RLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGM  313 (535)
Q Consensus       236 ~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~  313 (535)
                      .+...+++++|||||++|+|+|..|+++|.+|+++++ +.+++.+++++.+.+.+.+++.||++ +++++++++.++++.
T Consensus       162 ~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~  241 (450)
T 1ges_A          162 ALPALPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPSFDPMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGS  241 (450)
T ss_dssp             HCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHSCEEECSCCEEEEEECTTSC
T ss_pred             hhhhcCCeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCchhhhhhHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCcE
Confidence            9888899999999999999999999999999999999 89999999999999999999999999 999999998753334


Q ss_pred             EEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCCCcHHHHH
Q psy14461        314 KGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAA  393 (535)
Q Consensus       314 ~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~~~~~~A~  393 (535)
                      +.|++.   +|+  ++++|.|++|+|++||++++.++.+|++++++|+|.||+++||+.|+|||+|||+ +.+.+++.|.
T Consensus       242 ~~v~~~---~g~--~i~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~~~t~~~~IyA~GD~~-~~~~~~~~A~  315 (450)
T 1ges_A          242 LTLELE---DGR--SETVDCLIWAIGREPANDNINLEAAGVKTNEKGYIVVDKYQNTNIEGIYAVGDNT-GAVELTPVAV  315 (450)
T ss_dssp             EEEEET---TSC--EEEESEEEECSCEEESCTTSCHHHHTCCBCTTSCBCCCTTSBCSSTTEEECSGGG-TSCCCHHHHH
T ss_pred             EEEEEC---CCc--EEEcCEEEECCCCCcCCCCCCchhcCceECCCCCEeECCCCccCCCCEEEEeccC-CCCccHHHHH
Confidence            667773   676  7999999999999999986656788999999999999999999999999999999 7889999999


Q ss_pred             HHHHHHHHHHhCCCCCC-CCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcchhhhhh
Q psy14461        394 ISARLIIERLYGMQDQL-MDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVC  472 (535)
Q Consensus       394 ~~g~~aa~~i~g~~~~~-~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  472 (535)
                      +||++||.||++..... .++..+|+++|++|++++||+||+||++.+|..++.+...++....+.. ..          
T Consensus       316 ~~g~~aa~~i~~~~~~~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~~g~~~~~~~~~~~~~~~~~~-~~----------  384 (450)
T 1ges_A          316 AAGRRLSERLFNNKPDEHLDYSNIPTVVFSHPPIGTVGLTEPQAREQYGDDQVKVYKSSFTAMYTAV-TT----------  384 (450)
T ss_dssp             HHHHHHHHHHHTTCTTCCCCCSSCCEEECCSSCEEEEECCHHHHHHHHCGGGEEEEEEEEECHHHHT-SS----------
T ss_pred             HHHHHHHHHHcCCCCcccCCCCCCCeEEECCCceEEEeCCHHHHHhcCCCCcEEEEEEECchhhHHH-hc----------
Confidence            99999999999865444 6788899999999999999999999998754236888777776665543 11          


Q ss_pred             ccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461        473 LKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT  535 (535)
Q Consensus       473 ~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~  535 (535)
                                  +.+.+|+|+++|+++++|||+|++|++|.|+|+.+++||++++|++||.++
T Consensus       385 ------------~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~  435 (450)
T 1ges_A          385 ------------HRQPCRMKLVCVGSEEKIVGIHGIGFGMDEMLQGFAVALKMGATKKDFDNT  435 (450)
T ss_dssp             ------------SCCEEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTS
T ss_pred             ------------CCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcC
Confidence                        146899999999999999999999999999999999999999999999874

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=100.00  E-value=1.8e-59  Score=499.73  Aligned_cols=414  Identities=23%  Similarity=0.305  Sum_probs=351.7

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccccc---cccc----ccccccchhhccccccc-ccccccCHHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKK---RRLY----YPVAMSDLELEQDSTSA-LNVTIRNWNAA  160 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~---~l~~----~~~~i~~~~~~~~~~~~-~~~~~~~~~~l  160 (535)
                      ++|+|||+|++|+.+|+.+...+.+|+|||++ .+++...   .+|.    .+..........+.+.. .....++|..+
T Consensus         6 ~DVvVIGaG~aGl~aA~~la~~G~~V~liEk~-~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   84 (463)
T 4dna_A            6 YDLFVIGGGSGGVRSGRLAAALGKKVAIAEEF-RYGGTCVIRGCVPKKLYVYASQFAEHFEDAAGFGWTVGESRFDWAKL   84 (463)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEEECCCEECHHHH
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCEEEEEeCC-CCCCcccccCchhhHHHHHHHHHHHHHHHHHhcCcccCCCCcCHHHH
Confidence            68999999999999999998889999999994 3332110   0110    00000001111111111 12346799999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEE--ceeEEEcceEEEeeCceec-C-CCCC-CceechhhHH
Q psy14461        161 TKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKL--SNRSVTGFNFLLAVERRCL-P-EPRN-SALISADDLF  235 (535)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~--~~~~~~~d~lViATGs~p~-~-~i~G-~~v~~~~~~~  235 (535)
                      ..+.+.....+...+...++..+|+++.+++.+.+++++.+  ++..+.||+||||||++|. . ++|| +.++++++++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~v~~~~~~~~~~~d~lviAtG~~p~~~p~i~G~~~~~~~~~~~  164 (463)
T 4dna_A           85 VAAKEQEIARLEGLYRKGLANAGAEILDTRAELAGPNTVKLLASGKTVTAERIVIAVGGHPSPHDALPGHELCITSNEAF  164 (463)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEESSSSEEEETTTTEEEEEEEEEECCCEEECCCTTSTTGGGCBCHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeCCEEEEecCCeEEEeCEEEEecCCCcccCCCCCCccccccHHHHh
Confidence            99999888888888888888899999999999999999999  5588999999999999999 8 8999 7788999999


Q ss_pred             hccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCc
Q psy14461        236 RLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGM  313 (535)
Q Consensus       236 ~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~  313 (535)
                      .+...+++++|||+|++|+|+|..|++.|.+|+++++ +++++.+++++.+.+.+.+++.||++ +++.|++++.++++.
T Consensus       165 ~~~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~  244 (463)
T 4dna_A          165 DLPALPESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEILSRFDQDMRRGLHAAMEEKGIRILCEDIIQSVSADADGR  244 (463)
T ss_dssp             TCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEECTTSC
T ss_pred             hhhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCCE
Confidence            9888899999999999999999999999999999999 99999999999999999999999999 999999998763343


Q ss_pred             EEEE-EecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCCCcHHHH
Q psy14461        314 KGVR-GFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMA  392 (535)
Q Consensus       314 ~~v~-~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~~~~~~A  392 (535)
                      +.|+ +   .+|+   +++|.|++|+|++|++.+++++..|++++++|+|.||+++||+.|+|||+|||+ +.+++++.|
T Consensus       245 ~~v~~~---~~g~---i~aD~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~iya~GD~~-~~~~~~~~A  317 (463)
T 4dna_A          245 RVATTM---KHGE---IVADQVMLALGRMPNTNGLGLEAAGVRTNELGAIIVDAFSRTSTPGIYALGDVT-DRVQLTPVA  317 (463)
T ss_dssp             EEEEES---SSCE---EEESEEEECSCEEESCTTSSTGGGTCCBCTTSCBCCCTTCBCSSTTEEECSGGG-SSCCCHHHH
T ss_pred             EEEEEc---CCCe---EEeCEEEEeeCcccCCCCCCccccCceECCCCCEeECcCCCCCCCCEEEEEecC-CCCCChHHH
Confidence            5666 5   3563   899999999999999998767889999999999999999999999999999999 889999999


Q ss_pred             HHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcchhhhhh
Q psy14461        393 AISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVC  472 (535)
Q Consensus       393 ~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  472 (535)
                      ..||++||+||++......++..+|+++|++|++++||+||+||++++.  ++.+...++....++. ..          
T Consensus       318 ~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~p~~a~vG~te~~a~~~~~--~~~~~~~~~~~~~~~~-~~----------  384 (463)
T 4dna_A          318 IHEAMCFIETEYKNNPTSPDHDLIATAVFSQPEIGTVGITEEEAARKFQ--EIEVYRAEFRPMKATL-SG----------  384 (463)
T ss_dssp             HHHHHHHHHHHHSSCCCCCCCSCCCEEECSSSCEEEEECCHHHHHHHSS--EEEEEEEEECCTTHHH-HC----------
T ss_pred             HHHHHHHHHHHcCCCCcccCCCCCCEEEECCCCeEEecCCHHHHHHcCC--CeEEEEEeccccchhh-cC----------
Confidence            9999999999999766667888999999999999999999999999853  6888777776655543 11          


Q ss_pred             ccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461        473 LKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT  535 (535)
Q Consensus       473 ~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~  535 (535)
                                  +.+.||+||++|++|++|||+|++|++|.|+|+.+++||++++|++||.++
T Consensus       385 ------------~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~  435 (463)
T 4dna_A          385 ------------RKEKTIMKLVVNAADRKVVGAHILGHDAGEMAQLLGISLRAGCTKDDFDRT  435 (463)
T ss_dssp             ------------CCCCEEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTS
T ss_pred             ------------CCceEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhc
Confidence                        257899999999999999999999999999999999999999999999874

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=100.00  E-value=4.2e-59  Score=500.44  Aligned_cols=418  Identities=20%  Similarity=0.181  Sum_probs=351.1

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccccc---cccccc----ccccch-hhcccccc-cccccccCHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKK---RRLYYP----VAMSDL-ELEQDSTS-ALNVTIRNWNA  159 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~---~l~~~~----~~i~~~-~~~~~~~~-~~~~~~~~~~~  159 (535)
                      ++|+|||+|++|+.+|+.+...+.+|+|||+.+.+++...   .+|...    ...... ...+..+. ......++|..
T Consensus        26 ~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~GG~~~~~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  105 (491)
T 3urh_A           26 YDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRSTYGGTCLNVGCIPSKALLHASEMFHQAQHGLEALGVEVANPKLNLQK  105 (491)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHSSGGGTEECCCCEECHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCccccccchhhHHHHHHHHHHHHHHhhHhhcCcccCCCccCHHH
Confidence            5789999999999999999888999999999876644210   011100    000000 00011111 11245678999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEce-----eEEEcceEEEeeCceecCCCCC-------Cc
Q psy14461        160 ATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSN-----RSVTGFNFLLAVERRCLPEPRN-------SA  227 (535)
Q Consensus       160 l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~-----~~~~~d~lViATGs~p~~~i~G-------~~  227 (535)
                      +..+.+.....+...+...++..+|+++.+++.+.+++++.+..     .++.||+||||||++|.. +||       ..
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~~-ipg~~~~~~~~~  184 (491)
T 3urh_A          106 MMAHKDATVKSNVDGVSFLFKKNKIDGFQGTGKVLGQGKVSVTNEKGEEQVLEAKNVVIATGSDVAG-IPGVEVAFDEKT  184 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECSSSEEEEECTTSCEEEEECSEEEECCCEECCC-BTTBCCCCCSSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCEEEEEeCCCceEEEEeCEEEEccCCCCCC-CCCcccccCCee
Confidence            99999999999888888889999999999999999988888752     579999999999999764 333       45


Q ss_pred             eechhhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEE
Q psy14461        228 LISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEK  305 (535)
Q Consensus       228 v~~~~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~  305 (535)
                      ++++++++.+...+++++|||||++|+|+|..|+++|.+||++++ +++++.+++++.+.+.+.+++.||++ +++++++
T Consensus       185 ~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV~v~~~~~v~~  264 (491)
T 3urh_A          185 IVSSTGALALEKVPASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTILGGMDGEVAKQLQRMLTKQGIDFKLGAKVTG  264 (491)
T ss_dssp             EECHHHHTSCSSCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSSSSCHHHHHHHHHHHHHTTCEEECSEEEEE
T ss_pred             EEehhHhhhhhhcCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeccccccccCCHHHHHHHHHHHHhCCCEEEECCeEEE
Confidence            789999998888899999999999999999999999999999999 99999999999999999999999999 9999999


Q ss_pred             EEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCC
Q psy14461        306 VISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGK  385 (535)
Q Consensus       306 i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~  385 (535)
                      ++.+ ++.+.+++.+..+|+..++++|.|++|+|++|++++++++..+++++++|+|.||+++||+.|+|||+|||+ +.
T Consensus       265 i~~~-~~~~~v~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~IyA~GD~~-~~  342 (491)
T 3urh_A          265 AVKS-GDGAKVTFEPVKGGEATTLDAEVVLIATGRKPSTDGLGLAKAGVVLDSRGRVEIDRHFQTSIAGVYAIGDVV-RG  342 (491)
T ss_dssp             EEEE-TTEEEEEEEETTSCCCEEEEESEEEECCCCEECCTTSCHHHHTCCBCTTSCBCCCTTCBCSSTTEEECGGGS-SS
T ss_pred             EEEe-CCEEEEEEEecCCCceEEEEcCEEEEeeCCccCCCccCchhcCceECCCCCEeECCCCCCCCCCEEEEEecC-CC
Confidence            9876 466677776423365568999999999999999998777888999999999999999999999999999999 88


Q ss_pred             CCcHHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCc
Q psy14461        386 PNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPE  465 (535)
Q Consensus       386 ~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  465 (535)
                      +++++.|..||++||+||+|.. ..+++..+|+++|++|++++||+||+||++++.  ++.+...++....++. .    
T Consensus       343 ~~~~~~A~~~g~~aa~~i~g~~-~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~--~~~~~~~~~~~~~~~~-~----  414 (491)
T 3urh_A          343 PMLAHKAEDEGVAVAEIIAGQA-GHVNYDVIPGVVYTQPEVASVGKTEEELKAAGV--AYKIGKFPFTANGRAR-A----  414 (491)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTSC-CCCCTTCCCEEECSSSCEEEEECCHHHHHHTTC--CEEEEEEEGGGCHHHH-H----
T ss_pred             ccchhHHHHHHHHHHHHHcCCC-cccCCCCCCEEEEccCCeEEEeCCHHHHHhCCC--CEEEEEEecCcchhhh-c----
Confidence            9999999999999999999865 456788899999999999999999999999843  7888877776665543 1    


Q ss_pred             chhhhhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461        466 NFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT  535 (535)
Q Consensus       466 ~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~  535 (535)
                                        .+++.||+||++|++|++|||+|++|++|.|+|+.+++||++++|++||.++
T Consensus       415 ------------------~~~~~g~~k~i~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~  466 (491)
T 3urh_A          415 ------------------MLQTDGFVKILADKETDRVLGGHIIGFGAGEMIHEIAVLMEFGGSSEDLGRT  466 (491)
T ss_dssp             ------------------TTCCCCEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTS
T ss_pred             ------------------CCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCcHHHHhcC
Confidence                              1256899999999999999999999999999999999999999999999874

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=100.00  E-value=1.8e-59  Score=502.65  Aligned_cols=416  Identities=20%  Similarity=0.270  Sum_probs=348.8

Q ss_pred             EEEEeeCCccHHHHHHHHHhh-CCCeEEEEec--------CCccccccc--c-ccc----ccccccchhhccccccc-cc
Q psy14461         89 LYLDRIGDEGILLEEELKRQT-NQRRDELQER--------GSHLSFRKK--R-RLY----YPVAMSDLELEQDSTSA-LN  151 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~-~~~~V~lie~--------~~~~~~~~~--~-l~~----~~~~i~~~~~~~~~~~~-~~  151 (535)
                      ++|+|||+|++|+.+|+++.. .+.+|+|||+        ...+++...  + +|.    +...+.........+.. ..
T Consensus         4 ~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~   83 (490)
T 1fec_A            4 YDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKKLMVTGANYMDTIRESAGFGWELD   83 (490)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBSCTTCHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEECC
T ss_pred             ccEEEECCCHHHHHHHHHHHHHcCCEEEEEecccccccccCCCcCccccCCCcchhhHHHHHHHHHHHHHHHHhcCcccC
Confidence            689999999999999998888 8899999992        333332210  0 111    10000000001111111 01


Q ss_pred             cc--ccCHHHHHHHHHHHHHHHHHHHHHHHHhc-CcEEEEeEEEEecCCEEEE------ce---eEEEcceEEEeeCcee
Q psy14461        152 VT--IRNWNAATKLIKRFCIRAKNDSMRELKAL-GIDIVRTAAAFTNPHTIKL------SN---RSVTGFNFLLAVERRC  219 (535)
Q Consensus       152 ~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-gV~~~~g~~~~~~~~~v~~------~~---~~~~~d~lViATGs~p  219 (535)
                      ..  .++|..+.++.++....+...+...++.. ||+++.+++.+++++++.+      ++   .++.||+||||||++|
T Consensus        84 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g~~~~i~~~~v~v~~~~~~~g~~~~~~~~d~lviAtGs~p  163 (490)
T 1fec_A           84 RESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFHQGFGALQDNHTVLVRESADPNSAVLETLDTEYILLATGSWP  163 (490)
T ss_dssp             GGGCEECHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEEESEEEEEETTEEEEESSSSTTSCEEEEEEEEEEEECCCEEE
T ss_pred             CcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeEEEEeeCCEEEEEeeccCCCCceEEEEcCEEEEeCCCCC
Confidence            12  57899999999999988888888888888 9999999999999999888      34   6799999999999999


Q ss_pred             cC-CCCC-CceechhhHHhccCCCCcEEEECCChHHHHHHHHHHhC---CCcEEEEEc-CcCCccCcHHHHHHHHHhhhc
Q psy14461        220 LP-EPRN-SALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFL---GVPVTLVYS-RRLLKHFDQEMVRILLSSLTK  293 (535)
Q Consensus       220 ~~-~i~G-~~v~~~~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~---g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~  293 (535)
                      .. ++|| +.++++++++.+...+++++|||||++|+|+|..|+++   |.+||++++ +++++.+++++.+.+.+.+++
T Consensus       164 ~~p~i~g~~~~~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~  243 (490)
T 1fec_A          164 QHLGIEGDDLCITSNEAFYLDEAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRA  243 (490)
T ss_dssp             CCCCSBTGGGCBCHHHHTTCSSCCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHH
T ss_pred             CCCCCCCccceecHHHHhhhhhcCCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCcccccCHHHHHHHHHHHHh
Confidence            98 8999 77889999999888899999999999999999999999   999999999 999999999999999999999


Q ss_pred             CCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCC
Q psy14461        294 AGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSV  372 (535)
Q Consensus       294 ~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~  372 (535)
                      .||++ ++++|++++.++++.+.|++   .+|+  ++++|.|++|+|++||++.|.++.+|++++++|+|.||+++||+.
T Consensus       244 ~GV~i~~~~~v~~i~~~~~~~~~v~~---~~G~--~i~~D~vv~a~G~~p~~~~L~l~~~gl~~~~~G~I~Vd~~~~t~~  318 (490)
T 1fec_A          244 NGINVRTHENPAKVTKNADGTRHVVF---ESGA--EADYDVVMLAIGRVPRSQTLQLEKAGVEVAKNGAIKVDAYSKTNV  318 (490)
T ss_dssp             TTEEEEETCCEEEEEECTTSCEEEEE---TTSC--EEEESEEEECSCEEESCTTSCGGGGTCCBCTTSCBCCCTTCBCSS
T ss_pred             CCCEEEeCCEEEEEEEcCCCEEEEEE---CCCc--EEEcCEEEEccCCCcCccccCchhcCccCCCCCCEEECCCCccCC
Confidence            99999 99999999875333467776   3676  799999999999999998665688899999899999999999999


Q ss_pred             CCEEEeCCcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEec
Q psy14461        373 GNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSY  452 (535)
Q Consensus       373 ~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~  452 (535)
                      |+|||+|||+ +.+++++.|.+||++||.||++......++..+|+++|++|++++||+||+||++.+.  ++.+...++
T Consensus       319 ~~IyA~GD~~-~~~~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~~~--~~~~~~~~~  395 (490)
T 1fec_A          319 DNIYAIGDVT-DRVMLTPVAINEGAAFVDTVFANKPRATDHTKVACAVFSIPPMGVCGYVEEDAAKKYD--QVAVYESSF  395 (490)
T ss_dssp             TTEEECGGGG-CSCCCHHHHHHHHHHHHHHHHSSCCCCCCCSSCCEEECCSSCEEEEECCHHHHHHHCS--EEEEEEEEE
T ss_pred             CCEEEEeccC-CCccCHHHHHHHHHHHHHHhcCCCCCcCCCCCccEEEECCCCeEEEeCCHHHHHhcCC--CEEEEEeec
Confidence            9999999999 7788999999999999999998665667888999999999999999999999998843  677777777


Q ss_pred             CCcccccCCCCCcchhhhhhccCCcccccccccCcceEE-EEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHH
Q psy14461        453 PTFDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFV-KLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAE  531 (535)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~  531 (535)
                      ....+.+ +..                      .+.+|+ ||++|+++++|||+|++|++|.|+|+.+++||++++|++|
T Consensus       396 ~~~~~~~-~~~----------------------~~~~~~~kli~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~  452 (490)
T 1fec_A          396 TPLMHNI-SGS----------------------TYKKFMVRIVTNHADGEVLGVHMLGDSSPEIIQSVAICLKMGAKISD  452 (490)
T ss_dssp             CCHHHHH-HSC----------------------TTCCEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHH
T ss_pred             Chhhhhh-hcC----------------------CCeEEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHH
Confidence            6655443 221                      468999 9999999999999999999999999999999999999999


Q ss_pred             HcCC
Q psy14461        532 LDGT  535 (535)
Q Consensus       532 l~~~  535 (535)
                      |.++
T Consensus       453 l~~~  456 (490)
T 1fec_A          453 FYNT  456 (490)
T ss_dssp             HHTS
T ss_pred             Hhcc
Confidence            9864

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=100.00  E-value=1.2e-58  Score=495.76  Aligned_cols=418  Identities=18%  Similarity=0.190  Sum_probs=345.1

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccc---cccccccc----cccchhhcccccc-cccccccCHHH
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRK---KRRLYYPV----AMSDLELEQDSTS-ALNVTIRNWNA  159 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~---~~l~~~~~----~i~~~~~~~~~~~-~~~~~~~~~~~  159 (535)
                      .++|+|||+|++|+.+|+.+...+.+|+|||+++.+++..   +.+|....    .+........... ......++|..
T Consensus         6 ~~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~psk~ll~~~~~~~~~~~~~~~gi~~~~~~~~~~~   85 (482)
T 1ojt_A            6 EYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVRHLAANGIKYPEPELDIDM   85 (482)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCCHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCceeeecccchHHHHHHHHHHHHHHHHHhCCcccCCCccCHHH
Confidence            4789999999999999999888899999999977654221   01111000    0000000000000 01234578999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEc---e------------eEEEcceEEEeeCceecC-C-
Q psy14461        160 ATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLS---N------------RSVTGFNFLLAVERRCLP-E-  222 (535)
Q Consensus       160 l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~---~------------~~~~~d~lViATGs~p~~-~-  222 (535)
                      +..+.......+...+...++..||+++.+++.+.+++++.+.   +            .+++||+||||||++|.. + 
T Consensus        86 ~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~v~v~~~~g~~~~~~~~~g~~~~i~ad~lViAtGs~p~~~~~  165 (482)
T 1ojt_A           86 LRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQFLDPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRVTKLPF  165 (482)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTEEEEEEEEEEETTEEEEEEEEEEEEEEEEEECCCEEECCCSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCcEEEeeEEEEccCCEEEEEecCCcccccccccCcceEEEcCEEEECCCCCCCCCCC
Confidence            9998888888887777788888999999999888888877773   3            579999999999999987 6 


Q ss_pred             CCC-CceechhhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-c
Q psy14461        223 PRN-SALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-Q  299 (535)
Q Consensus       223 i~G-~~v~~~~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~  299 (535)
                      ++. ..++++++++.+...+++++|||||++|+|+|..|+++|.+||++++ +++++.+++++.+.+.+.|+++||++ +
T Consensus       166 i~~~~~v~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~~  245 (482)
T 1ojt_A          166 IPEDPRIIDSSGALALKEVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQGADRDLVKVWQKQNEYRFDNIMV  245 (482)
T ss_dssp             CCCCTTEECHHHHTTCCCCCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHGGGEEEEEC
T ss_pred             CCccCcEEcHHHHhcccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccccccCHHHHHHHHHHHHhcCCEEEE
Confidence            665 56889999998888899999999999999999999999999999999 99999999999999999999999999 9


Q ss_pred             ceEEEEEEEeCCCcEEEEEecCCC-CCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEe
Q psy14461        300 CCVIEKVISSFDGMKGVRGFHPES-KEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAV  378 (535)
Q Consensus       300 ~~~v~~i~~~~~~~~~v~~~~~~~-G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~  378 (535)
                      ++++++++.+ ++.+.|++.+..+ |+  ++++|.|++|+|++||+++++++.+|++++++|+|.||+++||+.|+|||+
T Consensus       246 ~~~v~~i~~~-~~~~~v~~~~~~~~g~--~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~~t~~~~IyA~  322 (482)
T 1ojt_A          246 NTKTVAVEPK-EDGVYVTFEGANAPKE--PQRYDAVLVAAGRAPNGKLISAEKAGVAVTDRGFIEVDKQMRTNVPHIYAI  322 (482)
T ss_dssp             SCEEEEEEEE-TTEEEEEEESSSCCSS--CEEESCEEECCCEEECGGGTTGGGTTCCCCTTSCCCCCTTSBCSSTTEEEC
T ss_pred             CCEEEEEEEc-CCeEEEEEeccCCCce--EEEcCEEEECcCCCcCCCCCChhhcCceeCCCCCEeeCCCcccCCCCEEEE
Confidence            9999999876 4556677752101 55  688999999999999999876688899999889999999999999999999


Q ss_pred             CCcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccc
Q psy14461        379 GGIVHGKPNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNL  458 (535)
Q Consensus       379 GD~~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~  458 (535)
                      |||+ +.+++++.|.+||++||.||++.. ..+++..+|+++|++|++++||+||+||++.+.  ++.+...++....++
T Consensus       323 GD~~-~~~~l~~~A~~~g~~aa~~i~g~~-~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~g~--~~~~~~~~~~~~~~~  398 (482)
T 1ojt_A          323 GDIV-GQPMLAHKAVHEGHVAAENCAGHK-AYFDARVIPGVAYTSPEVAWVGETELSAKASAR--KITKANFPWAASGRA  398 (482)
T ss_dssp             GGGT-CSSCCHHHHHHHHHHHHHHHTTCC-CCCCCCCCCEEECSSSCEEEEECCHHHHHHHTC--CEEEEEEEGGGCHHH
T ss_pred             Eccc-CCCccHHHHHHHHHHHHHHHcCCC-ccCCCCCCCEEEEcCCCeEEEeCCHHHHHhcCC--CEEEEEEEcCcchHH
Confidence            9999 788999999999999999999854 456788899999999999999999999998844  687777777655544


Q ss_pred             cCCCCCcchhhhhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461        459 LDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT  535 (535)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~  535 (535)
                      . ..                      +.+.+|+|+++|+++++|||+|++|++|.|+|+.+++||++++|++||.++
T Consensus       399 ~-~~----------------------~~~~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~  452 (482)
T 1ojt_A          399 I-AN----------------------GCDKPFTKLIFDAETGRIIGGGIVGPNGGDMIGEVCLAIEMGCDAADIGKT  452 (482)
T ss_dssp             H-HT----------------------TCCSCEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTS
T ss_pred             h-hc----------------------CCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcC
Confidence            3 11                      146799999999999999999999999999999999999999999999864

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=100.00  E-value=1.1e-58  Score=495.43  Aligned_cols=417  Identities=17%  Similarity=0.203  Sum_probs=347.5

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccc--cc-------cccccc----cccchh-hcccccc-ccccc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRK--KR-------RLYYPV----AMSDLE-LEQDSTS-ALNVT  153 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~--~~-------l~~~~~----~i~~~~-~~~~~~~-~~~~~  153 (535)
                      ++|+|||+|++|+.+|+.+...+.+|+|||+++..+...  ++       .|....    ...... ..+..+. .....
T Consensus         4 ~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~gG~~~~GG~~~~~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~   83 (476)
T 3lad_A            4 FDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGISTGEV   83 (476)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSBCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTSGGGTEECSCC
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCEEEEEeCCCccCCCCCcCCccccccHHHHHHHHHHHHHHHHHHHHHHhcCcccCCC
Confidence            578999999999999999888899999999986322110  00       110000    000000 0001110 01234


Q ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEce-----eEEEcceEEEeeCceecC-CCCC--
Q psy14461        154 IRNWNAATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSN-----RSVTGFNFLLAVERRCLP-EPRN--  225 (535)
Q Consensus       154 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~-----~~~~~d~lViATGs~p~~-~i~G--  225 (535)
                      .++|..+..+.+.+.+.+...+...++..+|+++.+++.+.+++++.+..     .++.||+||||||++|.. +.++  
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~~~~~~~~  163 (476)
T 3lad_A           84 AIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKLLAGKKVEVTAADGSSQVLDTENVILASGSKPVEIPPAPVD  163 (476)
T ss_dssp             EECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESEEEECSTTCEEEECTTSCEEEECCSCEEECCCEEECCCTTSCCC
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCEEEEEcCCCceEEEEcCEEEEcCCCCCCCCCCCCCC
Confidence            67899999999999999888888888899999999999998888777742     579999999999999987 5544  


Q ss_pred             -CceechhhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceE
Q psy14461        226 -SALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCV  302 (535)
Q Consensus       226 -~~v~~~~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~  302 (535)
                       ..++++++++.+...+++++|||+|++|+|+|..|++.|.+||++++ +++++.+++++.+.+.+.+++.||++ ++++
T Consensus       164 ~~~v~~~~~~~~~~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~v~~~~~  243 (476)
T 3lad_A          164 QDVIVDSTGALDFQNVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPAVDEQVAKEAQKILTKQGLKILLGAR  243 (476)
T ss_dssp             SSSEEEHHHHTSCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEETCE
T ss_pred             cccEEechhhhccccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcccCHHHHHHHHHHHHhCCCEEEECCE
Confidence             66889999998888899999999999999999999999999999999 99999999999999999999999999 9999


Q ss_pred             EEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcC
Q psy14461        303 IEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIV  382 (535)
Q Consensus       303 v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~  382 (535)
                      +++++.+ ++.+.+++.+ .+| +.++++|.|++|+|++||++.+.++..+++++++|+|.||++++|+.|+|||+|||+
T Consensus       244 v~~i~~~-~~~~~v~~~~-~~g-~~~~~~D~vi~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~t~~~~Iya~GD~~  320 (476)
T 3lad_A          244 VTGTEVK-NKQVTVKFVD-AEG-EKSQAFDKLIVAVGRRPVTTDLLAADSGVTLDERGFIYVDDYCATSVPGVYAIGDVV  320 (476)
T ss_dssp             EEEEEEC-SSCEEEEEES-SSE-EEEEEESEEEECSCEEECCTTCCSSCCSCCBCTTSCBCCCTTSBCSSTTEEECGGGS
T ss_pred             EEEEEEc-CCEEEEEEEe-CCC-cEEEECCEEEEeeCCcccCCCCCccccCccccCCCCEeeCCCcccCCCCEEEEEccC
Confidence            9999876 4567777753 123 347999999999999999987767889999999999999999999999999999999


Q ss_pred             CCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCC
Q psy14461        383 HGKPNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPL  462 (535)
Q Consensus       383 ~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  462 (535)
                       +.+.+++.|.+||++||+||+|.. ...++..+|+++|++|++++||+||+||++.+.  ++.+...++....++.   
T Consensus       321 -~~~~~~~~A~~~g~~aa~~i~g~~-~~~~~~~~p~~~~~~~~~a~vGlte~~a~~~g~--~~~~~~~~~~~~~~~~---  393 (476)
T 3lad_A          321 -RGAMLAHKASEEGVVVAERIAGHK-AQMNYDLIPAVIYTHPEIAGVGKTEQALKAEGV--AINVGVFPFAASGRAM---  393 (476)
T ss_dssp             -SSCCCHHHHHHHHHHHHHHHHHCC-CCCCTTCCCEEECSSSEEEEEECCHHHHHHTTC--CEEEEEEEGGGCHHHH---
T ss_pred             -CCcccHHHHHHHHHHHHHHhcCCC-cccCCCCCCEEEECcCCEEEeeCCHHHHHhcCC--CEEEEEEeccccchhe---
Confidence             889999999999999999999865 456788899999999999999999999999843  6777777776555443   


Q ss_pred             CCcchhhhhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461        463 LPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT  535 (535)
Q Consensus       463 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~  535 (535)
                                          ..+++.||+||++|++|++|||+|++|++|.|+|+.+++||++++|++||.++
T Consensus       394 --------------------~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~  446 (476)
T 3lad_A          394 --------------------AANDTAGFVKVIADAKTDRVLGVHVIGPSAAELVQQGAIAMEFGTSAEDLGMM  446 (476)
T ss_dssp             --------------------HHTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHHTCBHHHHHTS
T ss_pred             --------------------ecCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCcHHHHhcC
Confidence                                11256899999999999999999999999999999999999999999999874

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=100.00  E-value=2e-58  Score=491.37  Aligned_cols=415  Identities=24%  Similarity=0.334  Sum_probs=348.7

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccc----ccc----ccccccchhhcccccc-cccccccCHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKR----RLY----YPVAMSDLELEQDSTS-ALNVTIRNWNA  159 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~----l~~----~~~~i~~~~~~~~~~~-~~~~~~~~~~~  159 (535)
                      ++|+|||+|++|+.+|.++...+.+|+|||++. +++. |.    +|.    +...+.......+.+. .......+|..
T Consensus         5 ~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~-~GG~-~~~~gciP~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~   82 (463)
T 2r9z_A            5 FDLIAIGGGSGGLAVAEKAAAFGKRVALIESKA-LGGT-CVNVGCVPKKVMWYASHLAEAVRDAPGFGVQASGGTLDWPR   82 (463)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHH-HHHHSHHHHHHHHHHHHHHHHHHHGGGGTBCCC---CCHHH
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEcCCC-CCCc-CcCcCchhHHHHHHHHHHHHHHhhhhhcCcccCCCCcCHHH
Confidence            689999999999999999888899999999984 3221 11    111    0000000000111111 01124678999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEceeEEEcceEEEeeCceecC-CCCC-CceechhhHHhc
Q psy14461        160 ATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAVERRCLP-EPRN-SALISADDLFRL  237 (535)
Q Consensus       160 l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~~~~~~d~lViATGs~p~~-~i~G-~~v~~~~~~~~~  237 (535)
                      +..+.+.....+...+...++..+|+++.+++.+++.++|.+++.++.||+||||||++|.. ++|| +.++++++++.+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~v~~~g~~~~~d~lviAtGs~p~~p~i~G~~~~~~~~~~~~~  162 (463)
T 2r9z_A           83 LVAGRDRYIGAINSFWDGYVERLGITRVDGHARFVDAHTIEVEGQRLSADHIVIATGGRPIVPRLPGAELGITSDGFFAL  162 (463)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEETTEEEETTEEEEEEEEEECCCEEECCCSCTTGGGSBCHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCEEEEeEEEEccCCEEEECCEEEEcCEEEECCCCCCCCCCCCCccceecHHHHhhh
Confidence            99999988888888888888889999999998888889998866789999999999999998 8999 778899999998


Q ss_pred             cCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEE
Q psy14461        238 GAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKG  315 (535)
Q Consensus       238 ~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~  315 (535)
                      ...+++++|||+|++|+|+|..|+++|.+|+++++ +.+++.+++++.+.+.+.+++.||++ +++++++++.+ ++.+.
T Consensus       163 ~~~~~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~-~~~~~  241 (463)
T 2r9z_A          163 QQQPKRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLFQFDPLLSATLAENMHAQGIETHLEFAVAALERD-AQGTT  241 (463)
T ss_dssp             SSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEESSCCEEEEEEE-TTEEE
T ss_pred             hccCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEe-CCeEE
Confidence            88899999999999999999999999999999999 89999999999999999999999999 99999999876 34466


Q ss_pred             EEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCCCcHHHHHHH
Q psy14461        316 VRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAIS  395 (535)
Q Consensus       316 v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~~~~~~A~~~  395 (535)
                      |++.   +|++ ++++|.|++|+|++||++++.++.++++++++|+|.||++++|+.|+|||+|||+ +.+.+++.|.+|
T Consensus       242 v~~~---~G~~-~i~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~t~~~~Iya~GD~~-~~~~~~~~A~~~  316 (463)
T 2r9z_A          242 LVAQ---DGTR-LEGFDSVIWAVGRAPNTRDLGLEAAGIEVQSNGMVPTDAYQNTNVPGVYALGDIT-GRDQLTPVAIAA  316 (463)
T ss_dssp             EEET---TCCE-EEEESEEEECSCEEESCTTSCHHHHTCCCCTTSCCCCCTTSBCSSTTEEECGGGG-TSCCCHHHHHHH
T ss_pred             EEEe---CCcE-EEEcCEEEECCCCCcCCCCCCchhcCCccCCCCCEeECCCCccCCCCEEEEeecC-CCcccHHHHHHH
Confidence            7763   6753 6899999999999999987655778899998999999999999999999999999 788999999999


Q ss_pred             HHHHHHHHhCCCCCC-CCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcchhhhhhcc
Q psy14461        396 ARLIIERLYGMQDQL-MDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVCLK  474 (535)
Q Consensus       396 g~~aa~~i~g~~~~~-~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  474 (535)
                      |++||.||++..... .++..+|+++|++|++++||++|+||++++| .++.+...++....+.. ..            
T Consensus       317 g~~aa~~i~g~~~~~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~~g-~~~~~~~~~~~~~~~~~-~~------------  382 (463)
T 2r9z_A          317 GRRLAERLFDGQSERKLDYDNIPTVVFAHPPLSKVGLSEPEARERLG-DVLTVYETSFTPMRYAL-NE------------  382 (463)
T ss_dssp             HHHHHHHHHSCCTTCCCCCSSCCEEECCSSCEEEEECCHHHHHHHHC-SCEEEEEEEECCGGGTT-SS------------
T ss_pred             HHHHHHHHcCCCCcccCCCCCCCEEEeCCCCeEEEcCCHHHHHhcCC-CCEEEEEEEcccchhhh-hc------------
Confidence            999999999865444 6788899999999999999999999998754 37888877777665543 11            


Q ss_pred             CCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461        475 GGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT  535 (535)
Q Consensus       475 ~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~  535 (535)
                                +.+.+|+|+++|+++++|||+|++|++|.|+|+.+++||++++|++||.++
T Consensus       383 ----------~~~~~~~klv~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~  433 (463)
T 2r9z_A          383 ----------HGPKTAMKLVCAGPEQRVVGVHVIGDGADEMLQGFAVAVKMGATKADFDNT  433 (463)
T ss_dssp             ----------SCCCEEEEEEEETTTTEEEEEEEESTTGGGTSHHHHHHHHTTCBHHHHHTS
T ss_pred             ----------CCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcC
Confidence                      146899999999999999999999999999999999999999999999864

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=100.00  E-value=7.4e-59  Score=498.19  Aligned_cols=420  Identities=18%  Similarity=0.164  Sum_probs=348.1

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccc-------cccccccccccchhhccccccc-ccccccCHHH
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRK-------KRRLYYPVAMSDLELEQDSTSA-LNVTIRNWNA  159 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~-------~~l~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~  159 (535)
                      .++|+|||+|++|+.+|.++...+.+|+|||+++ +++..       ................++.+.. .....++|.+
T Consensus         8 ~~DvvVIGgG~aGl~aA~~la~~G~~V~liE~~~-~GGtc~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~   86 (492)
T 3ic9_A            8 NVDVAIIGTGTAGMGAYRAAKKHTDKVVLIEGGA-YGTTCARVGCMPSKLLIAAADASYHASQTDLFGIQVDRISVNGKA   86 (492)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTCSCEEEEESSC-SSCHHHHHSHHHHHHHHHHHHHHHHHTCGGGGTEECSEEEECHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC-CCCcccccChhcCHHHHHHHHHHHHHhhhhhcCcCCCCCccCHHH
Confidence            3789999999999999999988999999999975 33221       1111000000000111111111 1234578999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhc-CcEEEEeEEEEecCCEEEEc-eeEEEcceEEEeeCceecC-CCCC---Cceechhh
Q psy14461        160 ATKLIKRFCIRAKNDSMRELKAL-GIDIVRTAAAFTNPHTIKLS-NRSVTGFNFLLAVERRCLP-EPRN---SALISADD  233 (535)
Q Consensus       160 l~~~~~~~~~~~~~~~~~~~~~~-gV~~~~g~~~~~~~~~v~~~-~~~~~~d~lViATGs~p~~-~i~G---~~v~~~~~  233 (535)
                      +.++..+..+.+...+...+... +++++.|++.+.++++|.+. +.++.||+||||||++|.. ++++   +.++++++
T Consensus        87 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~a~~~~~~~v~~~~~~~~~~d~lViATGs~p~~p~~~~~~~~~v~t~~~  166 (492)
T 3ic9_A           87 VMKRIQTERDRFVGFVVESVESFDEQDKIRGFAKFLDEHTLQVDDHSQVIAKRIVIATGSRPNYPEFLAAAGSRLLTNDN  166 (492)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSCGGGEEESCEEEEETTEEEETTTEEEEEEEEEECCCEECCCCHHHHTTGGGEECHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCeeEEEEEEEEecCCEEEEcCCcEEEeCEEEEccCCCCcCCCCCCccCCcEEcHHH
Confidence            99988887777766555555554 68899999999999999994 4789999999999999987 6554   57899999


Q ss_pred             HHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCC
Q psy14461        234 LFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFD  311 (535)
Q Consensus       234 ~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~  311 (535)
                      ++.+...+++++|||||++|+|+|..|+++|.+||++++ +++++.+++++.+.+.+.|++. |++ +++.+++++.+ +
T Consensus       167 ~~~~~~~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~-V~i~~~~~v~~i~~~-~  244 (492)
T 3ic9_A          167 LFELNDLPKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVANLQDEEMKRYAEKTFNEE-FYFDAKARVISTIEK-E  244 (492)
T ss_dssp             HTTCSSCCSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCTTCCCHHHHHHHHHHHHTT-SEEETTCEEEEEEEC-S
T ss_pred             HhhhhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcccccCCHHHHHHHHHHHhhC-cEEEECCEEEEEEEc-C
Confidence            999988999999999999999999999999999999999 9999999999999999999988 999 99999999876 4


Q ss_pred             CcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcC-CCCCcCCCCEEEeCCcCCCCCCcHH
Q psy14461        312 GMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCN-EKDQTSVGNIFAVGGIVHGKPNNAS  390 (535)
Q Consensus       312 ~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd-~~~~T~~~~IyA~GD~~~~~~~~~~  390 (535)
                      +.+.+++.+ .+|++.++++|.|++|+|++||+++++++.+|++++++|+|.|| ++++|+.|+|||+|||+ +.+++++
T Consensus       245 ~~v~v~~~~-~~G~~~~i~~D~Vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~~t~~~~IyA~GD~~-~~~~~~~  322 (492)
T 3ic9_A          245 DAVEVIYFD-KSGQKTTESFQYVLAATGRKANVDKLGLENTSIELDKKNSPLFDELTLQTSVDHIFVAGDAN-NTLTLLH  322 (492)
T ss_dssp             SSEEEEEEC-TTCCEEEEEESEEEECSCCEESCSSSCGGGSCCCBCTTCCBCCCTTTCBCSSTTEEECGGGG-TSSCSHH
T ss_pred             CEEEEEEEe-CCCceEEEECCEEEEeeCCccCCCCCChhhcCCEECCCCCEeECcccccCCCCCEEEEEecC-CCCccHH
Confidence            567777652 36755589999999999999999997778999999999999999 99999999999999999 8889999


Q ss_pred             HHHHHHHHHHHHHhC-CCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCC---CCEEEEEEecCCcccccCCCCCcc
Q psy14461        391 MAAISARLIIERLYG-MQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGA---DGLVIYKSSYPTFDNLLDPLLPEN  466 (535)
Q Consensus       391 ~A~~~g~~aa~~i~g-~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  466 (535)
                      .|.+||++||.||++ ......++..+|+++|++|++++||+||+||++++|.   .++.+...++....++. ..    
T Consensus       323 ~A~~~g~~aa~~i~~~~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~~g~~~g~~~~~~~~~~~~~~~a~-~~----  397 (492)
T 3ic9_A          323 EAADDGKVAGTNAGAYPVIAQGQRRAPLSVVFTEPQVASVGLSLRQIEDLYADQDAANYVVGQVSFEGQGRSR-VM----  397 (492)
T ss_dssp             HHHHHHHHHHHHHHHTTSCCEECCCCCEEEECSSSEEEEEESCHHHHHHHCSCSSSCCEEEEEEEGGGCHHHH-HT----
T ss_pred             HHHHHHHHHHHHHcCCCCCcccCCCCCcEEEECCCCeEEecCCHHHHHhccCccCCccEEEEEEEeccchhhh-hc----
Confidence            999999999999997 3444567888999999999999999999999998632   16888888887666554 11    


Q ss_pred             hhhhhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461        467 FVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT  535 (535)
Q Consensus       467 ~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~  535 (535)
                                        +.+.||+||++|++|++|||+|++|++|.|+|+.+++||++++|++||.++
T Consensus       398 ------------------~~~~g~~kli~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~  448 (492)
T 3ic9_A          398 ------------------GKNKGLLNVYADRTSGEFLGAEMFGPAAEHIGHLLAWARQQQMTVQAMLTM  448 (492)
T ss_dssp             ------------------TCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHTTS
T ss_pred             ------------------CCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhC
Confidence                              257899999999999999999999999999999999999999999999874

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=100.00  E-value=8.2e-59  Score=497.21  Aligned_cols=414  Identities=23%  Similarity=0.301  Sum_probs=350.5

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccccc---cccc----ccccccchhhccccccc-ccccccCHHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKK---RRLY----YPVAMSDLELEQDSTSA-LNVTIRNWNAA  160 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~---~l~~----~~~~i~~~~~~~~~~~~-~~~~~~~~~~l  160 (535)
                      ++|+|||+|++|+.+|+.+...+.+|+|||++ .+++...   .+|.    ............+.+.. .....++|..+
T Consensus        27 ~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~-~~GG~~~~~gcip~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~  105 (484)
T 3o0h_A           27 FDLFVIGSGSGGVRAARLAGALGKRVAIAEEY-RIGGTCVIRGCVPKKLYFYASQYAQEFSKSIGFGWKYADPIFNWEKL  105 (484)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHHHGGGTBCCCCCEECHHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHhCcCEEEEEeCC-CCCCceeccCccccHHHHHHHHHHHHHHHHHhCCcccCCCccCHHHH
Confidence            68999999999999999999899999999994 3332210   0110    00000000011111111 12346789999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEE--ceeEEEcceEEEeeCceec-C-CCCC-CceechhhHH
Q psy14461        161 TKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKL--SNRSVTGFNFLLAVERRCL-P-EPRN-SALISADDLF  235 (535)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~--~~~~~~~d~lViATGs~p~-~-~i~G-~~v~~~~~~~  235 (535)
                      ..+.......+...+...++..+|+++.+.+.+.+.+++.+  ++.++.||+||||||++|. . ++|| +.++++++++
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~i~~~~v~v~~~~~~~~~d~lviAtG~~p~~~p~i~G~~~~~~~~~~~  185 (484)
T 3o0h_A          106 VAAKNKEISRLEGLYREGLQNSNVHIYESRAVFVDEHTLELSVTGERISAEKILIATGAKIVSNSAIKGSDLCLTSNEIF  185 (484)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEETTEEEETTTCCEEEEEEEEECCCEEECCC--CBTGGGSBCTTTGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeCCEEEEecCCeEEEeCEEEEccCCCcccCCCCCCccccccHHHHH
Confidence            99999888888888888899999999999999999999999  4578999999999999999 7 8999 7788999999


Q ss_pred             hccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCc
Q psy14461        236 RLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGM  313 (535)
Q Consensus       236 ~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~  313 (535)
                      .+...+++++|||+|++|+|+|..|++.|.+|+++++ +.+++.+++++.+.+.+.+++.||++ .++.|++++.+ ++.
T Consensus       186 ~~~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~-~~~  264 (484)
T 3o0h_A          186 DLEKLPKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLILRNFDYDLRQLLNDAMVAKGISIIYEATVSQVQST-ENC  264 (484)
T ss_dssp             GCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEESSCCEEEEEEC-SSS
T ss_pred             hHHhcCCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEee-CCE
Confidence            9888899999999999999999999999999999999 89999999999999999999999999 99999999876 456


Q ss_pred             EEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCCCcHHHHH
Q psy14461        314 KGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAA  393 (535)
Q Consensus       314 ~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~~~~~~A~  393 (535)
                      +.|++.   +|+  ++++|.|++|+|++|++.+++++..|++++++|+|.||++++|+.|+|||+|||+ +.+++++.|.
T Consensus       265 v~v~~~---~g~--~i~aD~Vi~A~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~Iya~GD~~-~~~~~~~~A~  338 (484)
T 3o0h_A          265 YNVVLT---NGQ--TICADRVMLATGRVPNTTGLGLERAGVKVNEFGAVVVDEKMTTNVSHIWAVGDVT-GHIQLTPVAI  338 (484)
T ss_dssp             EEEEET---TSC--EEEESEEEECCCEEECCTTCCHHHHTCCBCTTSCBCCCTTSBCSSTTEEECGGGG-TSCCCHHHHH
T ss_pred             EEEEEC---CCc--EEEcCEEEEeeCCCcCCCCCChhhcCceECCCCCEeECCCCCCCCCCEEEEEecC-CCCcCHHHHH
Confidence            677773   676  7999999999999999998767888999999999999999999999999999999 8899999999


Q ss_pred             HHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcchhhhhhc
Q psy14461        394 ISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVCL  473 (535)
Q Consensus       394 ~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  473 (535)
                      .||++||+||++......++..+|+++|++|++++||+||+||++++.  ++.+...++....++. ..           
T Consensus       339 ~~g~~aa~~i~~~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~--~~~~~~~~~~~~~~~~-~~-----------  404 (484)
T 3o0h_A          339 HDAMCFVKNAFENTSTTPDYDLITTAVFSQPEIGTVGLSEEDALHRYK--RVEIYRTVFRPMRNVL-SG-----------  404 (484)
T ss_dssp             HHHHHHHHHHHC---CCCCCTTCCEEECCSSCEEEEECCHHHHHHHCS--EEEEEEEEECCHHHHH-HT-----------
T ss_pred             HHHHHHHHHHcCCCCCcCCCCCCcEEEECCCCEEEeeCCHHHHHHcCC--CEEEEEecCCcchhhc-cC-----------
Confidence            999999999999766667888999999999999999999999999853  6888877777665543 11           


Q ss_pred             cCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461        474 KGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT  535 (535)
Q Consensus       474 ~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~  535 (535)
                                 +++.||+||++|++|++|||+|++|++|.|+|+.+++||++++|++||.++
T Consensus       405 -----------~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~  455 (484)
T 3o0h_A          405 -----------SPEKMFMKLVVDGESRIVVGAHVLGENAGEIAQLIGISLKGKLTKDIFDKT  455 (484)
T ss_dssp             -----------CCCCEEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHS
T ss_pred             -----------CCCcEEEEEEEECCCCEEEEEEEECcCHHHHHHHHHHHHHCCCCHHHHhcc
Confidence                       257899999999999999999999999999999999999999999999754

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=100.00  E-value=2.7e-58  Score=491.34  Aligned_cols=418  Identities=16%  Similarity=0.161  Sum_probs=345.8

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccccc---ccccccc----cccchhhc-cc--ccccccccccCHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKK---RRLYYPV----AMSDLELE-QD--STSALNVTIRNWN  158 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~---~l~~~~~----~i~~~~~~-~~--~~~~~~~~~~~~~  158 (535)
                      ++|+|||+|++|+.+|+++...+.+|+|||+++.+++...   .+|....    .+...... +.  +........++|.
T Consensus         3 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   82 (468)
T 2qae_A            3 YDVVVIGGGPGGYVASIKAAQLGMKTACVEKRGALGGTCLNVGCIPSKALLHATHLYHDAHANFARYGLMGGEGVTMDSA   82 (468)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEECGGGCEECHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCcCCCcCcHhHHHHHHHHHHHHHHHHHHHhcCcccCCCCccCHH
Confidence            6899999999999999998888999999999976543211   0111000    00000000 00  1000013356899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEc---e--eEEEcceEEEeeCceecC-CCCC---Ccee
Q psy14461        159 AATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLS---N--RSVTGFNFLLAVERRCLP-EPRN---SALI  229 (535)
Q Consensus       159 ~l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~---~--~~~~~d~lViATGs~p~~-~i~G---~~v~  229 (535)
                      .+..+.+...+.+...+...+++.+|+++.+++.+++.+++.+.   +  .++.||+||||||++|.. +++|   ..++
T Consensus        83 ~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~i~~~~~~v~~~~G~~~~~~~d~lviAtG~~p~~p~~~g~~~~~v~  162 (468)
T 2qae_A           83 KMQQQKERAVKGLTGGVEYLFKKNKVTYYKGEGSFETAHSIRVNGLDGKQEMLETKKTIIATGSEPTELPFLPFDEKVVL  162 (468)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEETTEEEEEETTSCEEEEEEEEEEECCCEEECCBTTBCCCSSSEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeCCEEEEEecCCceEEEEcCEEEECCCCCcCCCCCCCCCcCcee
Confidence            99999888888888878888888999999999888888877773   3  579999999999999998 8888   3689


Q ss_pred             chhhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhh-hcCCeEE-cceEEEEE
Q psy14461        230 SADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSL-TKAGVSI-QCCVIEKV  306 (535)
Q Consensus       230 ~~~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l-~~~gV~i-~~~~v~~i  306 (535)
                      ++++++.+...+++++|||+|++|+|+|..|++.|.+||++++ +++++.+++++.+.+.+.+ +++||++ ++++|+++
T Consensus       163 t~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~~gv~i~~~~~v~~i  242 (468)
T 2qae_A          163 SSTGALALPRVPKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAPTLDEDVTNALVGALAKNEKMKFMTSTKVVGG  242 (468)
T ss_dssp             CHHHHHTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCCEEECSCEEEEE
T ss_pred             chHHHhhcccCCceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCcccccCCHHHHHHHHHHHhhcCCcEEEeCCEEEEE
Confidence            9999999888899999999999999999999999999999999 9999999999999999999 9999999 99999999


Q ss_pred             EEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCC-C
Q psy14461        307 ISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHG-K  385 (535)
Q Consensus       307 ~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~-~  385 (535)
                      +.+ ++.+.+++.. .+|+..++++|.|++|+|++||+++++++.+|++++++|+|.||+++||+.|+|||+|||+ + .
T Consensus       243 ~~~-~~~~~v~~~~-~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~IyA~GD~~-~~~  319 (468)
T 2qae_A          243 TNN-GDSVSLEVEG-KNGKRETVTCEALLVSVGRRPFTGGLGLDKINVAKNERGFVKIGDHFETSIPDVYAIGDVV-DKG  319 (468)
T ss_dssp             EEC-SSSEEEEEEC-C---EEEEEESEEEECSCEEECCTTSCHHHHTCCBCTTSCBCCCTTSBCSSTTEEECGGGB-SSS
T ss_pred             EEc-CCeEEEEEEc-CCCceEEEECCEEEECCCcccCCCCCCchhcCCccCCCCCEeECCCcccCCCCEEEeeccC-CCC
Confidence            876 3456666642 2464447999999999999999998666788999988899999999999999999999999 7 7


Q ss_pred             CCcHHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCc
Q psy14461        386 PNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPE  465 (535)
Q Consensus       386 ~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  465 (535)
                      +++++.|.+||++||.||++.. .++++..+|+++|++|++++||+||+||++.+.  ++.+...++....++. ..   
T Consensus       320 ~~~~~~A~~~g~~aa~~i~~~~-~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~g~--~~~~~~~~~~~~~~~~-~~---  392 (468)
T 2qae_A          320 PMLAHKAEDEGVACAEILAGKP-GHVNYGVIPAVIYTMPEVASVGKSEDELKKEGV--AYKVGKFPFNANSRAK-AV---  392 (468)
T ss_dssp             CSCHHHHHHHHHHHHHHHTTCC-CCCCTTSCCEEECSSSEEEEEECCHHHHHHTTC--CEEEEEEEGGGCHHHH-HT---
T ss_pred             CccHhHHHHHHHHHHHHHcCCC-ccCCCCCCCEEEECCCceEEEeCCHHHHHhcCC--CEEEEEEecccchhhh-hc---
Confidence            8999999999999999999854 456788899999999999999999999998743  6888777776555543 11   


Q ss_pred             chhhhhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461        466 NFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT  535 (535)
Q Consensus       466 ~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~  535 (535)
                                         +++.+|+|+++|+++++|||+|++|++|.|+|+.+++||++++|++||.++
T Consensus       393 -------------------~~~~~~~kl~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~  443 (468)
T 2qae_A          393 -------------------STEDGFVKVLVDKATDRILGVHIVCTTAGELIGEACLAMEYGASSEDVGRT  443 (468)
T ss_dssp             -------------------TCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTS
T ss_pred             -------------------CCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhc
Confidence                               146899999999999999999999999999999999999999999999864

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-58  Score=494.95  Aligned_cols=417  Identities=20%  Similarity=0.328  Sum_probs=344.9

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccc----cccc----cccccchhhcccccccc------c-c
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKR----RLYY----PVAMSDLELEQDSTSAL------N-V  152 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~----l~~~----~~~i~~~~~~~~~~~~~------~-~  152 (535)
                      .++|+|||+|++|+.+|.++...+.+|+|||++. +++. |.    +|..    ...+.........+...      . .
T Consensus        11 ~~dVvVIGgG~aGl~aA~~l~~~g~~V~liE~~~-~GG~-~~n~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~   88 (479)
T 2hqm_A           11 HYDYLVIGGGSGGVASARRAASYGAKTLLVEAKA-LGGT-CVNVGCVPKKVMWYASDLATRVSHANEYGLYQNLPLDKEH   88 (479)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTSCCEEEEESSC-TTHH-HHHHSHHHHHHHHHHHHHHHHHTTTTTTTBSTTSCCSGGG
T ss_pred             cCCEEEEcCCHHHHHHHHHHHHCCCcEEEEeCCC-cCCc-CcccCcHHHHHHHHHHHHHHHHHhHHhcCccccccccccc
Confidence            4789999999999999999888899999999984 3221 10    1110    00000000000111100      1 2


Q ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEc---ee--EEEcceEEEeeCceecC--CCCC
Q psy14461        153 TIRNWNAATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLS---NR--SVTGFNFLLAVERRCLP--EPRN  225 (535)
Q Consensus       153 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~---~~--~~~~d~lViATGs~p~~--~i~G  225 (535)
                      ..++|..+..+.+.++..+...+...++..+|+++.+++.+++++++.+.   +.  ++.||+||||||++|..  ++||
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~~i~g  168 (479)
T 2hqm_A           89 LTFNWPEFKQKRDAYVHRLNGIYQKNLEKEKVDVVFGWARFNKDGNVEVQKRDNTTEVYSANHILVATGGKAIFPENIPG  168 (479)
T ss_dssp             CCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECTTSCEEEEESSSCCEEEEEEEEEECCCEEECCCTTSTT
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeCCEEEEEeCCCcEEEEEeCEEEEcCCCCCCCCCCCCC
Confidence            46789999999998888888888888888999999999888887777762   33  79999999999999976  4788


Q ss_pred             -CceechhhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceE
Q psy14461        226 -SALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCV  302 (535)
Q Consensus       226 -~~v~~~~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~  302 (535)
                       +.++++++++.+...+++++|||||++|+|+|..|+++|.+||++++ +++++.+++++.+.+.+.|++.||++ ++++
T Consensus       169 ~~~~~~~~~~~~l~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~Gv~i~~~~~  248 (479)
T 2hqm_A          169 FELGTDSDGFFRLEEQPKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVLRKFDECIQNTITDHYVKEGINVHKLSK  248 (479)
T ss_dssp             GGGSBCHHHHHHCSSCCSEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHHTCEEECSCC
T ss_pred             cccccchHHHhcccccCCeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCccccccCHHHHHHHHHHHHhCCeEEEeCCE
Confidence             66788999999888899999999999999999999999999999999 99999999999999999999999999 9999


Q ss_pred             EEEEEEeCCC-cEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCc
Q psy14461        303 IEKVISSFDG-MKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGI  381 (535)
Q Consensus       303 v~~i~~~~~~-~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~  381 (535)
                      |++++.++++ .+.|++.   +|+ .++++|.|++|+|++||+ .|.++.+|++++++|+|.||++++|+.|+|||+|||
T Consensus       249 v~~i~~~~~~~~~~v~~~---~G~-~~i~~D~vv~a~G~~p~~-~l~l~~~gl~~~~~G~i~vd~~~~t~~~~IyA~GD~  323 (479)
T 2hqm_A          249 IVKVEKNVETDKLKIHMN---DSK-SIDDVDELIWTIGRKSHL-GMGSENVGIKLNSHDQIIADEYQNTNVPNIYSLGDV  323 (479)
T ss_dssp             EEEEEECC-CCCEEEEET---TSC-EEEEESEEEECSCEEECC-CSSGGGGTCCBCTTSCBCCCTTCBCSSTTEEECGGG
T ss_pred             EEEEEEcCCCcEEEEEEC---CCc-EEEEcCEEEECCCCCCcc-ccChhhcCceECCCCCEeECCCCccCCCCEEEEEec
Confidence            9999875223 2567763   673 379999999999999999 444578899999999999999999999999999999


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHhCCC---CCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccc
Q psy14461        382 VHGKPNNASMAAISARLIIERLYGMQ---DQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNL  458 (535)
Q Consensus       382 ~~~~~~~~~~A~~~g~~aa~~i~g~~---~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~  458 (535)
                      + +.+.+++.|.+||++||.||++..   ....++..+|+++|++|++++||++|+||++.++..++++...++....++
T Consensus       324 ~-~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~vGl~e~~a~~~~~~~~~~~~~~~~~~~~~~  402 (479)
T 2hqm_A          324 V-GKVELTPVAIAAGRKLSNRLFGPEKFRNDKLDYENVPSVIFSHPEAGSIGISEKEAIEKYGKENIKVYNSKFTAMYYA  402 (479)
T ss_dssp             T-TSSCCHHHHHHHHHHHHHHHHSCGGGTTCCCCCTTCCEEECCSSCEEEEECCHHHHHHHHCGGGEEEEEEEECCGGGG
T ss_pred             C-CCcccHHHHHHHHHHHHHHhcCCCccCcccCCCCCCCeEEECCCCeEEEeCCHHHHHhcCCCCcEEEEEEeccHHHHH
Confidence            9 888899999999999999999865   345677789999999999999999999999885533488888777766654


Q ss_pred             cCCCCCcchhhhhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461        459 LDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT  535 (535)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~  535 (535)
                      . ..                      +++.+|+||++|+++++|||+|++|++|.|+|+.+++||++++|++||.++
T Consensus       403 ~-~~----------------------~~~~~~~kli~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~  456 (479)
T 2hqm_A          403 M-LS----------------------EKSPTRYKIVCAGPNEKVVGLHIVGDSSAEILQGFGVAIKMGATKADFDNC  456 (479)
T ss_dssp             G-CS----------------------SCCCEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTS
T ss_pred             h-hc----------------------CCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhC
Confidence            3 11                      146899999999999999999999999999999999999999999999874

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=100.00  E-value=1.6e-58  Score=492.28  Aligned_cols=415  Identities=20%  Similarity=0.200  Sum_probs=345.7

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccc---cccccccc----cccchhhcccccccccccccCHHHH
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRK---KRRLYYPV----AMSDLELEQDSTSALNVTIRNWNAA  160 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~---~~l~~~~~----~i~~~~~~~~~~~~~~~~~~~~~~l  160 (535)
                      .++++|||+|++|+.+|..+...+.+|+|||+++ +++..   +.+|...+    .+.........+.......++|..+
T Consensus         6 ~~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~~-~GG~~~~~g~iP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   84 (464)
T 2eq6_A            6 TYDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGE-VGGVCLNVGCIPTKALLHAAETLHHLKVAEGFGLKAKPELDLKKL   84 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHHHHGGGTEECCCEECHHHH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC-CCCCCCCcChHHHHHHHHHHHHHHHHHhHHhcCCCCCCCcCHHHH
Confidence            3789999999999999998888889999999987 32210   00111100    0000000000000002345789999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEceeEEEcceEEEeeCceecC-C-CCC-CceechhhHHhc
Q psy14461        161 TKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAVERRCLP-E-PRN-SALISADDLFRL  237 (535)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~~~~~~d~lViATGs~p~~-~-i~G-~~v~~~~~~~~~  237 (535)
                      ..+.++..+.+...+...++..||+++.+++.+.+++++.+.+.++.||+||||||++|.. + +|+ ..++++++++.+
T Consensus        85 ~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~v~v~g~~~~~d~lViATGs~p~~p~gi~~~~~v~~~~~~~~l  164 (464)
T 2eq6_A           85 GGWRDQVVKKLTGGVGTLLKGNGVELLRGFARLVGPKEVEVGGERYGAKSLILATGSEPLELKGFPFGEDVWDSTRALKV  164 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEETTEEEETTEEEEEEEEEECCCEEECCBTTBCCSSSEECHHHHTCG
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCEEEeeeEEEccCCEEEEccEEEEeCEEEEcCCCCCCCCCCCCCCCcEEcHHHHHhh
Confidence            9998888888877777888889999999998888888888876689999999999999988 6 777 568899999988


Q ss_pred             cC-CCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcE
Q psy14461        238 GA-WPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMK  314 (535)
Q Consensus       238 ~~-~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~  314 (535)
                      .. .+++++|||||++|+|+|..|+++|.+||++++ +++++.+++++.+.+.+.+++.||++ +++++++++.+ ++.+
T Consensus       165 ~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~-~~~~  243 (464)
T 2eq6_A          165 EEGLPKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILPQGDPETAALLRRALEKEGIRVRTKTKAVGYEKK-KDGL  243 (464)
T ss_dssp             GGCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEECSEEEEEEEEE-TTEE
T ss_pred             hhhcCCEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCccccccCHHHHHHHHHHHHhcCCEEEcCCEEEEEEEe-CCEE
Confidence            77 889999999999999999999999999999999 99999999999999999999999999 99999999876 4556


Q ss_pred             EEEEecCCC--CCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCCCcHHHH
Q psy14461        315 GVRGFHPES--KEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMA  392 (535)
Q Consensus       315 ~v~~~~~~~--G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~~~~~~A  392 (535)
                      .+++.+  +  |+++++++|.|++|+|++||++++.++.+|++++++|+|.||+++||+.|+|||+|||+ +.+.+++.|
T Consensus       244 ~v~~~~--~~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~Iya~GD~~-~~~~l~~~A  320 (464)
T 2eq6_A          244 HVRLEP--AEGGEGEEVVVDKVLVAVGRKPRTEGLGLEKAGVKVDERGFIRVNARMETSVPGVYAIGDAA-RPPLLAHKA  320 (464)
T ss_dssp             EEEEEE--TTCCSCEEEEESEEEECSCEEESCTTSSHHHHTCCBCTTSCBCCCTTCBCSSTTEEECGGGT-CSSCCHHHH
T ss_pred             EEEEee--cCCCceeEEEcCEEEECCCcccCCCCCChhhcCceecCCCCEEECCCcccCCCCEEEEeccC-CCcccHHHH
Confidence            677642  4  66567999999999999999998766788899988999999999999999999999999 888999999


Q ss_pred             HHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcchhhhhh
Q psy14461        393 AISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVC  472 (535)
Q Consensus       393 ~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  472 (535)
                      .+||++||.||++.. ..+++. +|+++|++|++++||+||+||++.+.  ++.+...++....++. ..          
T Consensus       321 ~~~g~~aa~~i~g~~-~~~~~~-~p~~~~~~~~~a~vG~~e~~a~~~g~--~~~~~~~~~~~~~~~~-~~----------  385 (464)
T 2eq6_A          321 MREGLIAAENAAGKD-SAFDYQ-VPSVVYTSPEWAGVGLTEEEAKRAGY--KVKVGKFPLAASGRAL-TL----------  385 (464)
T ss_dssp             HHHHHHHHHHHTTCC-CCCCCC-CCEEECSSSEEEEEECCHHHHHHTTC--CEEEEEEEGGGCHHHH-HT----------
T ss_pred             HHHHHHHHHHhcCCC-cccCCC-CCeEEECCCCEEEEeCCHHHHHhcCC--CEEEEEEEcCcchhhh-hc----------
Confidence            999999999999854 456777 99999999999999999999998844  6777777776555543 11          


Q ss_pred             ccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcC
Q psy14461        473 LKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDG  534 (535)
Q Consensus       473 ~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~  534 (535)
                                  +++.+|+|+++|+++++|||+|++|++|.|+|+.+++||++++|++||.+
T Consensus       386 ------------~~~~g~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~  435 (464)
T 2eq6_A          386 ------------GGAEGMVKVVGDEETDLLLGVFIVGPQAGELIAEAALALEMGATLTDLAL  435 (464)
T ss_dssp             ------------SCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHH
T ss_pred             ------------CCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhc
Confidence                        14689999999999999999999999999999999999999999999975

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=100.00  E-value=3.1e-58  Score=491.62  Aligned_cols=420  Identities=18%  Similarity=0.176  Sum_probs=345.2

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccccc---cccccccc-ccc---hhh--ccc--ccccccccccC
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKK---RRLYYPVA-MSD---LEL--EQD--STSALNVTIRN  156 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~---~l~~~~~~-i~~---~~~--~~~--~~~~~~~~~~~  156 (535)
                      .++++|||+|++|+.+|..+...+.+|+|||+++.+++...   ..|..... ...   ...  .+.  +.. ......+
T Consensus         6 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~g~~-~~~~~~~   84 (474)
T 1zmd_A            6 DADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGTDFASRGIE-MSEVRLN   84 (474)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHSSHHHHTTEE-ESCEEEC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCcCCcccccCccchHHHHHHHHHHHHhhhhhHhhCccc-cCCCccC
Confidence            47899999999999999988888999999999976543210   01110000 000   000  000  110 1123568


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEc----e-eEEEcceEEEeeCceecC-CCCC---Cc
Q psy14461        157 WNAATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLS----N-RSVTGFNFLLAVERRCLP-EPRN---SA  227 (535)
Q Consensus       157 ~~~l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~----~-~~~~~d~lViATGs~p~~-~i~G---~~  227 (535)
                      |..+..+.+++.+.+...+...++..+|+++.+++.+.+.+++.+.    + .++.||+||||||++|.. +++|   ..
T Consensus        85 ~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~gg~~~~~~d~lViAtGs~p~~p~i~g~~~~~  164 (474)
T 1zmd_A           85 LDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGKITGKNQVTATKADGGTQVIDTKNILIATGSEVTPFPGITIDEDT  164 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEEEETTEEEEECTTSCEEEEEEEEEEECCCEEECCCTTCCCCSSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCEEEEEecCCCcEEEEeCEEEECCCCCCCCCCCCCCCcCc
Confidence            9999999988888888777888888999999999888888877773    2 579999999999999998 8888   35


Q ss_pred             eechhhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCc-cCcHHHHHHHHHhhhcCCeEE-cceEEE
Q psy14461        228 LISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLK-HFDQEMVRILLSSLTKAGVSI-QCCVIE  304 (535)
Q Consensus       228 v~~~~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~-~~~~~~~~~~~~~l~~~gV~i-~~~~v~  304 (535)
                      ++++++++.+...+++++|||||++|+|+|..|+++|.+||++++ +++++ .+++++.+.+.+.++++||++ ++++|+
T Consensus       165 v~t~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~  244 (474)
T 1zmd_A          165 IVSSTGALSLKKVPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTKVT  244 (474)
T ss_dssp             EECHHHHTTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSCSSCCHHHHHHHHHHHHHTTCEEECSEEEE
T ss_pred             EEcHHHHhhccccCceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCccCCcccCHHHHHHHHHHHHHCCCEEEeCceEE
Confidence            899999998888899999999999999999999999999999999 99999 899999999999999999999 999999


Q ss_pred             EEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCC
Q psy14461        305 KVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHG  384 (535)
Q Consensus       305 ~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~  384 (535)
                      +++.++++.+.+++.+..+++..++++|.|++|+|++||++++.++.+|++++++|+|.||+++||+.|+|||+|||+ +
T Consensus       245 ~i~~~~~~~~~v~~~~~~~~~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~IyA~GD~~-~  323 (474)
T 1zmd_A          245 GATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQTKIPNIYAIGDVV-A  323 (474)
T ss_dssp             EEEECTTSCEEEEEEETTSCCCEEEEESEEEECSCEEECCTTSSHHHHTCCCCTTSCCCCCTTCBCSSTTEEECGGGS-S
T ss_pred             EEEEcCCceEEEEEEecCCCCceEEEcCEEEECcCCCcCCCcCCchhcCCccCCCCCEEECcCCccCCCCEEEeeecC-C
Confidence            998763222666653211222238999999999999999998656788999998999999999999999999999999 7


Q ss_pred             CCCcHHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCC
Q psy14461        385 KPNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLP  464 (535)
Q Consensus       385 ~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  464 (535)
                      .+++++.|.+||++||.||++.. .++++..+|+++|++|++++||+||+||++.+.  ++.+...++....++. ..  
T Consensus       324 ~~~~~~~A~~~g~~aa~~i~~~~-~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~g~--~~~~~~~~~~~~~~~~-~~--  397 (474)
T 1zmd_A          324 GPMLAHKAEDEGIICVEGMAGGA-VHIDYNCVPSVIYTHPEVAWVGKSEEQLKEEGI--EYKVGKFPFAANSRAK-TN--  397 (474)
T ss_dssp             SCCCHHHHHHHHHHHHHHHTTCC-CCCCGGGCCEEECSSSEEEEEECCHHHHHHHTC--CEEEEEEEGGGCHHHH-HT--
T ss_pred             CCccHHHHHHHHHHHHHHhcCCC-CcCCCCCCCEEEECCCCeEEEeCCHHHHHhcCC--CEEEEEEecccchhhh-hc--
Confidence            88999999999999999999864 456788899999999999999999999998843  7888777776655543 11  


Q ss_pred             cchhhhhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461        465 ENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT  535 (535)
Q Consensus       465 ~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~  535 (535)
                                          +++.+|+|+++|+++++|||+|++|++|.|+|+.++++|++++|++||.++
T Consensus       398 --------------------~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~l~~~  448 (474)
T 1zmd_A          398 --------------------ADTDGMVKILGQKSTDRVLGAHILGPGAGEMVNEAALALEYGASCEDIARV  448 (474)
T ss_dssp             --------------------TCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHHTCBHHHHHHS
T ss_pred             --------------------CCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhC
Confidence                                146899999999999999999999999999999999999999999999753

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=100.00  E-value=8.1e-59  Score=494.96  Aligned_cols=411  Identities=16%  Similarity=0.147  Sum_probs=344.1

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccccc---ccccc----cccccchhhcccccccccccccCHHHH
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKK---RRLYY----PVAMSDLELEQDSTSALNVTIRNWNAA  160 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~---~l~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~l  160 (535)
                      .++|+|||+|++|+.+|..+...+.+|+|||+.+.+++...   .+|..    .........+.+.    ....++|..+
T Consensus         4 ~~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~GG~~~~~gciPsk~l~~~a~~~~~~~~~~~----~~~~~~~~~~   79 (466)
T 3l8k_A            4 KYDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGGNCLYSGCVPSKTVREVIQTAWRLTNIAN----VKIPLDFSTV   79 (466)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHC----SCCCCCHHHH
T ss_pred             cceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCcccccCCCchHHHHHHHHHHHHHHhccc----CCCCcCHHHH
Confidence            37899999999999999999888999999998876643311   01110    0000000000000    2346789999


Q ss_pred             HHHHHHHHHHHH--HHHHHHHHhcCcEEEEeEEEEecCCEEEEce---eE--EEcceEEEeeCceecC-CCCC-Cceech
Q psy14461        161 TKLIKRFCIRAK--NDSMRELKALGIDIVRTAAAFTNPHTIKLSN---RS--VTGFNFLLAVERRCLP-EPRN-SALISA  231 (535)
Q Consensus       161 ~~~~~~~~~~~~--~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~---~~--~~~d~lViATGs~p~~-~i~G-~~v~~~  231 (535)
                      ..+.+...+ +.  ..+...++..+|+++.+++.+++++.+.+..   .+  +.||+||||||++|.. ++|| +.++++
T Consensus        80 ~~~~~~~~~-l~~~~~~~~~~~~~~v~~~~g~v~~id~~~~~V~~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~~~~t~  158 (466)
T 3l8k_A           80 QDRKDYVQE-LRFKQHKRNMSQYETLTFYKGYVKIKDPTHVIVKTDEGKEIEAETRYMIIASGAETAKLRLPGVEYCLTS  158 (466)
T ss_dssp             HHHHHHHHH-HHHHHHHHHHTTCTTEEEESEEEEEEETTEEEEEETTSCEEEEEEEEEEECCCEEECCCCCTTGGGSBCH
T ss_pred             HHHHHhhee-ccccchHHHHHHhCCCEEEEeEEEEecCCeEEEEcCCCcEEEEecCEEEECCCCCccCCCCCCccceEeH
Confidence            999888887 77  6777788888999999999988888777643   45  9999999999999999 9999 778999


Q ss_pred             hhHH----hccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccC-cHHHHHHHHHhhhcCCeEE-cceEEE
Q psy14461        232 DDLF----RLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHF-DQEMVRILLSSLTKAGVSI-QCCVIE  304 (535)
Q Consensus       232 ~~~~----~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~-~~~~~~~~~~~l~~~gV~i-~~~~v~  304 (535)
                      ++++    .+...+++++|||+|++|+|+|..|+++|.+|+++++ +++++.+ ++++.+.+++.++   |++ ++++++
T Consensus       159 ~~~~~~~~~l~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~d~~~~~~l~~~l~---v~i~~~~~v~  235 (466)
T 3l8k_A          159 DDIFGYKTSFRKLPQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALITLEDQDIVNTLLSILK---LNIKFNSPVT  235 (466)
T ss_dssp             HHHHSTTCSCCSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCCHHHHHHHHHHHC---CCEECSCCEE
T ss_pred             HHHHHHHHHHhhCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcCCCCCCCHHHHHHHHhcCE---EEEEECCEEE
Confidence            9999    6667789999999999999999999999999999999 9999988 9999999999886   999 999999


Q ss_pred             EEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCC
Q psy14461        305 KVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHG  384 (535)
Q Consensus       305 ~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~  384 (535)
                      +++.++++.+.+++.+ .+|++.++++|.|++|+|++||++ +.++.+|++++++| |.||+++||+.|+|||+|||+ +
T Consensus       236 ~i~~~~~~~v~v~~~~-~~G~~~~i~~D~vi~a~G~~p~~~-l~l~~~gl~~~~~G-i~vd~~~~t~~~~Iya~GD~~-~  311 (466)
T 3l8k_A          236 EVKKIKDDEYEVIYST-KDGSKKSIFTNSVVLAAGRRPVIP-EGAREIGLSISKTG-IVVDETMKTNIPNVFATGDAN-G  311 (466)
T ss_dssp             EEEEEETTEEEEEECC-TTSCCEEEEESCEEECCCEEECCC-TTTGGGTCCBCSSS-BCCCTTCBCSSTTEEECGGGT-C
T ss_pred             EEEEcCCCcEEEEEEe-cCCceEEEEcCEEEECcCCCcccc-cchhhcCceeCCCC-EeECCCccCCCCCEEEEEecC-C
Confidence            9987622566677741 156666899999999999999999 55688899999999 999999999999999999999 7


Q ss_pred             CCCcHHHHHHHHHHHHHHHhCC--CCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCC
Q psy14461        385 KPNNASMAAISARLIIERLYGM--QDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPL  462 (535)
Q Consensus       385 ~~~~~~~A~~~g~~aa~~i~g~--~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  462 (535)
                      .+++++.|.+||++||.||++.  .....++..+|+++|++|++++||+||+||++.+.  ++.+...++....++. . 
T Consensus       312 ~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~g~--~~~~~~~~~~~~~~~~-~-  387 (466)
T 3l8k_A          312 LAPYYHAAVRMSIAAANNIMANGMPVDYVDVKSIPVTIYTIPSLSYVGILPSKARKMGI--EIVEAEYNMEEDVSAQ-I-  387 (466)
T ss_dssp             SCCSHHHHHHHHHHHHHHHHTTTSCCCCCCSTTSCEEECSSSCEEEEECCHHHHHHHTC--CEEEEEEEGGGSHHHH-H-
T ss_pred             CCccHhHHHHHHHHHHHHHhCCCCCccccCCCCCcEEEECCCCeEEecCCHHHHHhCCC--CEEEEEEEcccChhhe-e-
Confidence            8999999999999999999986  55567888999999999999999999999999854  7888887777655543 1 


Q ss_pred             CCcchhhhhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461        463 LPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT  535 (535)
Q Consensus       463 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~  535 (535)
                                           .+++.||+||++|++|++|||+|++|++|.|+|+.+++||++++|++||.++
T Consensus       388 ---------------------~~~~~g~~k~i~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~  439 (466)
T 3l8k_A          388 ---------------------YGQKEGVLKLIFERGSMRLIGAWMIGVHSQYLINELGLAVAYGLNAKQLASF  439 (466)
T ss_dssp             ---------------------HTCCCCEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHC
T ss_pred             ---------------------cCCCeEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCcCCHHHHhcc
Confidence                                 1257899999999999999999999999999999999999999999999764

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=1.6e-58  Score=496.68  Aligned_cols=420  Identities=22%  Similarity=0.346  Sum_probs=334.6

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccc----cccc----cccccchhhcccccccccccccCHHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKR----RLYY----PVAMSDLELEQDSTSALNVTIRNWNAA  160 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~----l~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~l  160 (535)
                      ++|+|||+|++|+.+|.++...+.+|+|||++. +++. |.    +|..    ...+.....+...+.......++|..+
T Consensus         3 ~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~-~GG~-c~~~gc~P~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~   80 (500)
T 1onf_A            3 YDLIVIGGGSGGMAAARRAARHNAKVALVEKSR-LGGT-CVNVGCVPKKIMFNAASVHDILENSRHYGFDTKFSFNLPLL   80 (500)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS-TTHH-HHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCHHHH
T ss_pred             cCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC-cCcc-ccccCCcchHHHHHHHHHHHHHHhhHhcCCccCCccCHHHH
Confidence            478999999999999999888899999999985 3211 11    1110    000011111111111111145789999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEc--------------eeEEEcceEEEeeCceecC-CCCC
Q psy14461        161 TKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLS--------------NRSVTGFNFLLAVERRCLP-EPRN  225 (535)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~--------------~~~~~~d~lViATGs~p~~-~i~G  225 (535)
                      ..+.+..+..+...+...++..||+++.+++.+++++++.+.              +.++.||+||||||++|.. ++||
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~id~~~v~v~~~~~~~~~~~~~~~~~~~~~d~lViAtGs~p~~p~i~G  160 (500)
T 1onf_A           81 VERRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVFPPVKG  160 (500)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCEEEESCCCCC--------------------------CBSSEEECCCCCBCCCSCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeCCEEEEEeccccccccccCCCceEEEeCEEEECCCCCCCCCCCCC
Confidence            998888888888878888888999999998777777777763              3568999999999999998 8999


Q ss_pred             -CceechhhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceE
Q psy14461        226 -SALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCV  302 (535)
Q Consensus       226 -~~v~~~~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~  302 (535)
                       +.++++++++.+.. +++++|||||++|+|+|..|+++|.+||++++ +++++.+++++.+.+.+.|+++||++ ++++
T Consensus       161 ~~~~~~~~~~~~~~~-~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gv~i~~~~~  239 (500)
T 1onf_A          161 IENTISSDEFFNIKE-SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRKFDESVINVLENDMKKNNINIVTFAD  239 (500)
T ss_dssp             GGGCEEHHHHTTCCC-CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEECSCC
T ss_pred             CCcccCHHHHhccCC-CCeEEEECChHHHHHHHHHHHHcCCeEEEEecCCccCcccchhhHHHHHHHHHhCCCEEEECCE
Confidence             77889999988877 99999999999999999999999999999999 99999999999999999999999999 9999


Q ss_pred             EEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcC
Q psy14461        303 IEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIV  382 (535)
Q Consensus       303 v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~  382 (535)
                      +++++.++++.+.|++.   +|++ ++++|.|++|+|++||++.|.++.+|+++ ++|+|.||+++||+.|+|||+|||+
T Consensus       240 v~~i~~~~~~~~~v~~~---~g~~-~~~~D~vi~a~G~~p~~~~l~~~~~g~~~-~~G~i~vd~~~~t~~~~iya~GD~~  314 (500)
T 1onf_A          240 VVEIKKVSDKNLSIHLS---DGRI-YEHFDHVIYCVGRSPDTENLKLEKLNVET-NNNYIVVDENQRTSVNNIYAVGDCC  314 (500)
T ss_dssp             EEEEEESSTTCEEEEET---TSCE-EEEESEEEECCCBCCTTTTSSCTTTTCCB-SSSCEEECTTCBCSSSSEEECSTTE
T ss_pred             EEEEEEcCCceEEEEEC---CCcE-EEECCEEEECCCCCcCCCCCCchhcCccc-cCCEEEECCCcccCCCCEEEEeccc
Confidence            99998753344667763   6762 39999999999999999766558889998 7899999999999999999999998


Q ss_pred             C---------------------------------CCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeee
Q psy14461        383 H---------------------------------GKPNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTV  429 (535)
Q Consensus       383 ~---------------------------------~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~v  429 (535)
                      .                                 +.+++++.|.+||++||+||++......++..+|+++|++|++++|
T Consensus       315 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~v  394 (500)
T 1onf_A          315 MVKKSKEIEDLNLLKLYNEERYLNKKENVTEDIFYNVQLTPVAINAGRLLADRLFLKKTRKTNYKLIPTVIFSHPPIGTI  394 (500)
T ss_dssp             EEC------------------------------CBCCCCHHHHHHHHHHHHHHHHSCTTCCCCCSSCCEEECCSSCEEEE
T ss_pred             cccccccccccccccccccccccccccccccccCCcccchhHHHHHHHHHHHHHhCCCCccCCCCCCCeEEEcCcceEEE
Confidence            1                                 3567899999999999999998665567788899999999999999


Q ss_pred             cCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcchhhhhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEc
Q psy14461        430 GMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIG  509 (535)
Q Consensus       430 G~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G  509 (535)
                      |+||+||++.+|..++.+....+....++.+ .-.                  ..+.+.+|+||++|+++++|||+|++|
T Consensus       395 Gl~e~~a~~~~g~~~~~~~~~~~~~~~~~~~-~~~------------------~~~~~~~~~kli~~~~~~~ilG~~~~g  455 (500)
T 1onf_A          395 GLSEEAAIQIYGKENVKIYESKFTNLFFSVY-DIE------------------PELKEKTYLKLVCVGKDELIKGLHIIG  455 (500)
T ss_dssp             ECCHHHHHHHTCGGGEEEEEEEECCGGGTTS-CSC------------------GGGSCCEEEEEEEETTTTEEEEEEEES
T ss_pred             eCCHHHHHhcCCCccEEEEEEECchhhhhhc-ccc------------------ccCCCceEEEEEEECCCCEEEEEEEEC
Confidence            9999999988542368877777765544320 000                  012468999999999999999999999


Q ss_pred             CchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461        510 QNVAGMIFGYSLALRKFLTKAELDGT  535 (535)
Q Consensus       510 ~~a~e~i~~~~~~i~~~~t~~~l~~~  535 (535)
                      ++|.|+|+.+++||++++|++||.++
T Consensus       456 ~~a~~~i~~~~~ai~~~~t~~~l~~~  481 (500)
T 1onf_A          456 LNADEIVQGFAVALKMNATKKDFDET  481 (500)
T ss_dssp             TTHHHHHHHHHHHHHTTCBHHHHHTS
T ss_pred             CCHHHHHHHHHHHHHcCCCHHHHhcc
Confidence            99999999999999999999999864

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=100.00  E-value=1e-57  Score=486.35  Aligned_cols=417  Identities=18%  Similarity=0.170  Sum_probs=342.2

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccc---cccccccc----cccchhh-cccccccccccccCHHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRK---KRRLYYPV----AMSDLEL-EQDSTSALNVTIRNWNAA  160 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~---~~l~~~~~----~i~~~~~-~~~~~~~~~~~~~~~~~l  160 (535)
                      ++|+|||+|++|+.+|+.+...+.+|+|||++. ++...   ..+|....    .+..... ....+.......++|..+
T Consensus         4 ~dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~~-~gG~~~~~g~~psk~ll~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   82 (464)
T 2a8x_A            4 YDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPKY-WGGVCLNVGCIPSKALLRNAELVHIFTKDAKAFGISGEVTFDYGIA   82 (464)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHHHTTTTTEEECCEECHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC-CCCcccccCchhhHHHHHHHHHHHHHHHHHHhcCCCCCCccCHHHH
Confidence            689999999999999999888899999999983 32110   00111000    0000000 000000001235688888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEc---e--eEEEcceEEEeeCceecC-CCCC--Cceechh
Q psy14461        161 TKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLS---N--RSVTGFNFLLAVERRCLP-EPRN--SALISAD  232 (535)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~---~--~~~~~d~lViATGs~p~~-~i~G--~~v~~~~  232 (535)
                      ..+.......+...+...+++.||+++.+++.+.+.+.+.+.   +  .++.||+||+|||++|+. +++|  ..+++++
T Consensus        83 ~~~~~~~~~~l~~~l~~~~~~~gv~~~~g~~~~id~~~v~V~~~~G~~~~~~~d~lViAtG~~~~~~~~~g~~~~~~~~~  162 (464)
T 2a8x_A           83 YDRSRKVAEGRVAGVHFLMKKNKITEIHGYGTFADANTLLVDLNDGGTESVTFDNAIIATGSSTRLVPGTSLSANVVTYE  162 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEESSSSEEEEEETTSCCEEEEEEEEEECCCEEECCCTTCCCBTTEECHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCeEEEEeCCCceEEEEcCEEEECCCCCCCCCCCCCCCceEEecH
Confidence            888877777777777788888999999999888777777763   3  579999999999999988 8888  3488999


Q ss_pred             hHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeC
Q psy14461        233 DLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSF  310 (535)
Q Consensus       233 ~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~  310 (535)
                      +++.+...+++++|||||++|+|+|..|+++|.+||++++ +++++.+++++.+.+.+.++++||++ +++++++++.+ 
T Consensus       163 ~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~-  241 (464)
T 2a8x_A          163 EQILSRELPKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRALPNEDADVSKEIEKQFKKLGVTILTATKVESIADG-  241 (464)
T ss_dssp             HHHTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEECSCEEEEEEEC-
T ss_pred             HHhhccccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHHHHHHHHHHcCCEEEeCcEEEEEEEc-
Confidence            9998888899999999999999999999999999999999 99999999999999999999999999 99999999875 


Q ss_pred             CCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCCCcHH
Q psy14461        311 DGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNAS  390 (535)
Q Consensus       311 ~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~~~~~  390 (535)
                      ++.+.+++..  +|+..++++|.|++|+|++||+++++++.+|++++++|+|.||+++||+.|+|||+|||+ +.+++++
T Consensus       242 ~~~~~v~~~~--~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~~t~~~~IyA~GD~~-~~~~~~~  318 (464)
T 2a8x_A          242 GSQVTVTVTK--DGVAQELKAEKVLQAIGFAPNVEGYGLDKAGVALTDRKAIGVDDYMRTNVGHIYAIGDVN-GLLQLAH  318 (464)
T ss_dssp             SSCEEEEEES--SSCEEEEEESEEEECSCEEECCSSSCHHHHTCCBCTTSSBCCCTTSBCSSTTEEECGGGG-CSSCSHH
T ss_pred             CCeEEEEEEc--CCceEEEEcCEEEECCCCCccCCCCCchhcCCccCCCCCEeECcCCccCCCCEEEeECcC-CCccCHH
Confidence            3456666642  564458999999999999999998766788999988899999999999999999999999 7888999


Q ss_pred             HHHHHHHHHHHHHhCCCCCC-CCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcchhh
Q psy14461        391 MAAISARLIIERLYGMQDQL-MDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVK  469 (535)
Q Consensus       391 ~A~~~g~~aa~~i~g~~~~~-~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (535)
                      .|.+||++||.||++....+ ++|..+|+++|++|++++||+||+||++.+.  ++.+...++....++. .        
T Consensus       319 ~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~g~--~~~~~~~~~~~~~~~~-~--------  387 (464)
T 2a8x_A          319 VAEAQGVVAAETIAGAETLTLGDHRMLPRATFCQPNVASFGLTEQQARNEGY--DVVVAKFPFTANAKAH-G--------  387 (464)
T ss_dssp             HHHHHHHHHHHHHHTCCCCCCCCGGGSCEEECSSSEEEEEECCHHHHHHTTC--CEEEEEEEGGGCHHHH-H--------
T ss_pred             HHHHHHHHHHHHhcCCCCcccCCCCCCCEEEECCCCeEEEcCCHHHHHhcCC--CEEEEEEEcchhhhhh-h--------
Confidence            99999999999999833344 6788899999999999999999999998743  6887777776555432 1        


Q ss_pred             hhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461        470 LVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT  535 (535)
Q Consensus       470 ~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~  535 (535)
                                    .+++.+|+|+++|+++++|||+|++|++|.|+|+.++++|++++|++||.++
T Consensus       388 --------------~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~  439 (464)
T 2a8x_A          388 --------------VGDPSGFVKLVADAKHGELLGGHLVGHDVAELLPELTLAQRWDLTASELARN  439 (464)
T ss_dssp             --------------HTCCCCEEEEEEETTTTEEEEEEEEETTGGGGHHHHHHHHHTTCBHHHHTTS
T ss_pred             --------------cCCCcEEEEEEEECCCCEEEEEEEECcCHHHHHHHHHHHHHCCCCHHHHhhC
Confidence                          1246899999999999999999999999999999999999999999999864

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=2.9e-57  Score=481.59  Aligned_cols=416  Identities=20%  Similarity=0.264  Sum_probs=342.2

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccc---cccccccc----cccchhhcccccc-cccccccCHHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRK---KRRLYYPV----AMSDLELEQDSTS-ALNVTIRNWNAA  160 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~---~~l~~~~~----~i~~~~~~~~~~~-~~~~~~~~~~~l  160 (535)
                      ++|+|||+|++|+.+|.++...+.+|+|||++ .+++..   ..+|....    ...........+. .......+|..+
T Consensus         4 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~gG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   82 (455)
T 1ebd_A            4 TETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG-NLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAENVTIDFAKV   82 (455)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECCSCEECHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEECC-CCCCcCcCcCchhhHHHHHHHHHHHHHHHHHhcCcccCCCccCHHHH
Confidence            57899999999999999888889999999998 332210   00111000    0000000000000 011235688888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEc---e-eEEEcceEEEeeCceecC-CCCC--Cceechhh
Q psy14461        161 TKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLS---N-RSVTGFNFLLAVERRCLP-EPRN--SALISADD  233 (535)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~---~-~~~~~d~lViATGs~p~~-~i~G--~~v~~~~~  233 (535)
                      ..+.+...+.+...+...+++.||+++.+++.+.+++++.+.   + .++.||+||||||++|.. +++|  ..++++++
T Consensus        83 ~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~id~~~v~V~~~~G~~~i~~d~lViATGs~p~~~~~~g~~~~v~~~~~  162 (455)
T 1ebd_A           83 QEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDANTVRVVNGDSAQTYTFKNAIIATGSRPIELPNFKFSNRILDSTG  162 (455)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTCEEEESEEEEEETTEEEEEETTEEEEEECSEEEECCCEEECCBTTBCCCSSEECHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCeEEEEeCCCcEEEEeCEEEEecCCCCCCCCCCCccceEecHHH
Confidence            888888888887777888888999999999888888877763   3 579999999999999998 8888  34889999


Q ss_pred             HHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCC
Q psy14461        234 LFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFD  311 (535)
Q Consensus       234 ~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~  311 (535)
                      ++.+...+++++|||||++|+|+|..|+++|.+||++++ +++++.+++++.+.+.+.+++.||++ ++++|++++.+ +
T Consensus       163 ~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~-~  241 (455)
T 1ebd_A          163 ALNLGEVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSGFEKQMAAIIKKRLKKKGVEVVTNALAKGAEER-E  241 (455)
T ss_dssp             HHTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEESEEEEEEEEE-T
T ss_pred             HhccccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEe-C
Confidence            998888899999999999999999999999999999999 99999999999999999999999999 99999999876 4


Q ss_pred             CcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCCCcHHH
Q psy14461        312 GMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASM  391 (535)
Q Consensus       312 ~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~~~~~~  391 (535)
                      +.+.+++..  +|+..++++|.|++|+|++||+++++++.++++++++|+|.||+++||+.|+|||+|||+ +.+++++.
T Consensus       242 ~~~~v~~~~--~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~t~~~~Iya~GD~~-~~~~~~~~  318 (455)
T 1ebd_A          242 DGVTVTYEA--NGETKTIDADYVLVTVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCRTSVPNIFAIGDIV-PGPALAHK  318 (455)
T ss_dssp             TEEEEEEEE--TTEEEEEEESEEEECSCEEESCSSSSTTTTTCCBCTTSCBCCCTTCBCSSTTEEECGGGS-SSCCCHHH
T ss_pred             CeEEEEEEe--CCceeEEEcCEEEECcCCCcccCcCChhhcCCccCCCCCEeeCCCcccCCCCEEEEeccC-CCcccHHH
Confidence            556666642  333347999999999999999998666888999998999999999999999999999999 78889999


Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcchhhhh
Q psy14461        392 AAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLV  471 (535)
Q Consensus       392 A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  471 (535)
                      |.+||++||.||++.. .++++..+|+++|++|++++||+||+||++.+.  ++.+...++....++. .          
T Consensus       319 A~~~g~~aa~~i~~~~-~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~g~--~~~~~~~~~~~~~~~~-~----------  384 (455)
T 1ebd_A          319 ASYEGKVAAEAIAGHP-SAVDYVAIPAVVFSDPECASVGYFEQQAKDEGI--DVIAAKFPFAANGRAL-A----------  384 (455)
T ss_dssp             HHHHHHHHHHHHTSCC-CCCCCSCCCEEECSSSCEEEEECCHHHHHTTTC--CEEEEEEEGGGCHHHH-H----------
T ss_pred             HHHHHHHHHHHHcCCC-ccCCCCCCCEEEECCCceEEEeCCHHHHHhcCC--CEEEEEEEcCcchHHh-h----------
Confidence            9999999999999854 456788899999999999999999999998743  6887777776554432 1          


Q ss_pred             hccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461        472 CLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT  535 (535)
Q Consensus       472 ~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~  535 (535)
                                  .+++.+|+|+++|+++++|||+|++|++|.|+|+.+++||++++|++||.++
T Consensus       385 ------------~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~  436 (455)
T 1ebd_A          385 ------------LNDTDGFLKLVVRKEDGVIIGAQIIGPNASDMIAELGLAIEAGMTAEDIALT  436 (455)
T ss_dssp             ------------HTCCCCEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHHTCBHHHHHHS
T ss_pred             ------------cCCCcEEEEEEEECCCCEEEEEEEeCCCHHHHHHHHHHHHHCCCCHHHHhhc
Confidence                        1246899999999999999999999999999999999999999999999753

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=7.8e-58  Score=488.05  Aligned_cols=418  Identities=18%  Similarity=0.187  Sum_probs=344.9

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccccc---cccccccc-ccc---hhhc-cc--ccccccccccCHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKK---RRLYYPVA-MSD---LELE-QD--STSALNVTIRNWN  158 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~---~l~~~~~~-i~~---~~~~-~~--~~~~~~~~~~~~~  158 (535)
                      ++|+|||+|++|+.+|..+...+.+|+|||+++.+++...   .+|..... ...   .... +.  +.. ......+|.
T Consensus         7 ~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~   85 (470)
T 1dxl_A            7 NDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVK-VSNVEIDLA   85 (470)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEE-ESCEEECHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCccccccCcCccchHHHHHHHHHHHHHHHHHHhcCcc-cCCCccCHH
Confidence            5789999999999999988888899999999976543211   01110000 000   0000 00  000 112346888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEc---e--eEEEcceEEEeeCceecC-CCCC---Ccee
Q psy14461        159 AATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLS---N--RSVTGFNFLLAVERRCLP-EPRN---SALI  229 (535)
Q Consensus       159 ~l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~---~--~~~~~d~lViATGs~p~~-~i~G---~~v~  229 (535)
                      .+..+.+...+.+...+...++..+|+++.+++.+.+.+.+.+.   +  .++.||+||+|||++|.. +++|   ..++
T Consensus        86 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~G~~~~i~~d~lIiAtGs~p~~p~~~g~~~~~v~  165 (470)
T 1dxl_A           86 AMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVSPSEISVDTIEGENTVVKGKHIIIATGSDVKSLPGVTIDEKKIV  165 (470)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEEEETTEEEECCSSSCCEEEECSEEEECCCEEECCBTTBCCCSSSEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCEEEEEeCCCceEEEEcCEEEECCCCCCCCCCCCCCCcccEE
Confidence            88888888888887777778888899999999888888887774   2  579999999999999998 8888   3689


Q ss_pred             chhhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEE
Q psy14461        230 SADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVI  307 (535)
Q Consensus       230 ~~~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~  307 (535)
                      ++++++.+...+++++|||||++|+|+|..|+++|.+||++++ +++++.+++++.+.+.+.+++.||++ +++++++++
T Consensus       166 ~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~  245 (470)
T 1dxl_A          166 SSTGALALSEIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPTMDAEIRKQFQRSLEKQGMKFKLKTKVVGVD  245 (470)
T ss_dssp             CHHHHTTCSSCCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHSSCCEECSEEEEEEE
T ss_pred             eHHHhhhhhhcCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcccccccHHHHHHHHHHHHHcCCEEEeCCEEEEEE
Confidence            9999998888899999999999999999999999999999999 99999999999999999999999999 999999998


Q ss_pred             EeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCCC
Q psy14461        308 SSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPN  387 (535)
Q Consensus       308 ~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~~  387 (535)
                      .+ ++.+.+++.+..+|+..++++|.|++|+|++||+++++++.+|++++++|+|.||+++||+.|+|||+|||+ +.++
T Consensus       246 ~~-~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~~t~~~~Iya~GD~~-~~~~  323 (470)
T 1dxl_A          246 TS-GDGVKLTVEPSAGGEQTIIEADVVLVSAGRTPFTSGLNLDKIGVETDKLGRILVNERFSTNVSGVYAIGDVI-PGPM  323 (470)
T ss_dssp             CS-SSSEEEEEEESSSCCCEEEEESEEECCCCEEECCTTSCCTTTTCCBCSSSCBCCCTTCBCSSTTEEECSTTS-SSCC
T ss_pred             Ec-CCeEEEEEEecCCCcceEEECCEEEECCCCCcCCCCCCchhcCCccCCCCCEeECcCCccCCCCEEEEeccC-CCCc
Confidence            75 344666664322454448999999999999999998666888999998899999999999999999999999 7888


Q ss_pred             cHHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcch
Q psy14461        388 NASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENF  467 (535)
Q Consensus       388 ~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  467 (535)
                      +++.|.+||++||.||++.. .++++..+|+++|++|++++||+||+||++.+.  ++.+...++....++. .      
T Consensus       324 ~~~~A~~~g~~aa~~i~g~~-~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~g~--~~~~~~~~~~~~~~~~-~------  393 (470)
T 1dxl_A          324 LAHKAEEDGVACVEYLAGKV-GHVDYDKVPGVVYTNPEVASVGKTEEQVKETGV--EYRVGKFPFMANSRAK-A------  393 (470)
T ss_dssp             CHHHHHHHHHHHHHHHTTSC-CCCCTTSCCEEECSSSEEEEEECCHHHHHHTTC--CEEEEEEEGGGCHHHH-H------
T ss_pred             cHHHHHHHHHHHHHHHcCCC-cCCCCCCCCEEEECCCceEEEcCCHHHHHhcCC--cEEEEEEecccchHHH-h------
Confidence            99999999999999999854 456788899999999999999999999998743  6887777776554432 1      


Q ss_pred             hhhhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461        468 VKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT  535 (535)
Q Consensus       468 ~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~  535 (535)
                                      .+++.+|+|+++|+++++|||+|++|++|.|+|+.++++|++++|++||.++
T Consensus       394 ----------------~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~l~~~  445 (470)
T 1dxl_A          394 ----------------IDNAEGLVKIIAEKETDKILGVHIMAPNAGELIHEAAIALQYDASSEDIARV  445 (470)
T ss_dssp             ----------------HSCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTS
T ss_pred             ----------------cCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhc
Confidence                            1246899999999999999999999999999999999999999999999764

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=100.00  E-value=2.3e-57  Score=487.77  Aligned_cols=414  Identities=17%  Similarity=0.179  Sum_probs=342.7

Q ss_pred             EEEEeeCCccHHHHHHHHHhhC---CCeEEEEecCCccccccc---ccccccc----cccchhhccccccc---cccccc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTN---QRRDELQERGSHLSFRKK---RRLYYPV----AMSDLELEQDSTSA---LNVTIR  155 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~---~~~V~lie~~~~~~~~~~---~l~~~~~----~i~~~~~~~~~~~~---~~~~~~  155 (535)
                      ++|+|||+|++|+.+|..+...   +.+|+|||+++ +++...   .+|....    ........+..+..   ......
T Consensus         3 ~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~-~GG~~~~~g~~psk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~   81 (499)
T 1xdi_A            3 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG-IGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFHIDFDDAKI   81 (499)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTBC------CB
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC-cCCcccCcCccchHHHHHHHHHHHHHHHHHhCCCccccCCCcc
Confidence            5899999999999999887776   89999999987 432210   0111000    00000000000000   113356


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecC------CEEEEc---ee--EEEcceEEEeeCceecC-CC
Q psy14461        156 NWNAATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNP------HTIKLS---NR--SVTGFNFLLAVERRCLP-EP  223 (535)
Q Consensus       156 ~~~~l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~------~~v~~~---~~--~~~~d~lViATGs~p~~-~i  223 (535)
                      +|..+..++++..+.+...+...+++.||+++.+++.+++.      +++.+.   +.  .+.||+||||||++|.. ++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~~~~~~~~~V~~~~g~~~~~~~d~lviATGs~p~~p~i  161 (499)
T 1xdi_A           82 SLPQIHARVKTLAAAQSADITAQLLSMGVQVIAGRGELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPRILPS  161 (499)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECCSSSCCSSEEEEEECTTSCEEEEEESEEEECCCEEECCCGG
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCcccCCCCEEEEEeCCCcEEEEEeCEEEEcCCCCCCCCCC
Confidence            89999999888888888878888889999999999888776      666662   23  79999999999999988 88


Q ss_pred             CC---CceechhhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-
Q psy14461        224 RN---SALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-  298 (535)
Q Consensus       224 ~G---~~v~~~~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-  298 (535)
                      ||   ..+++.++++.+...+++++|||+|++|+|+|..|++.|.+|+++++ +.+++.+++++.+.+.+.+++.||++ 
T Consensus       162 ~g~~~~~v~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~GV~i~  241 (499)
T 1xdi_A          162 AQPDGERILTWRQLYDLDALPDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVLPYEDADAALVLEESFAERGVRLF  241 (499)
T ss_dssp             GCCCSSSEEEGGGGGGCSSCCSSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSSSCCSSHHHHHHHHHHHHHTTCEEE
T ss_pred             CCCCcCcEEehhHhhhhhccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEE
Confidence            88   45889999998888899999999999999999999999999999999 99999999999999999999999999 


Q ss_pred             cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEe
Q psy14461        299 QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAV  378 (535)
Q Consensus       299 ~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~  378 (535)
                      +++.|++++.+ ++.+.+++   .+|+  ++++|.|++|+|++||+++++++.+|++++++|+|.||+++||+.|+|||+
T Consensus       242 ~~~~V~~i~~~-~~~v~v~~---~~g~--~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~  315 (499)
T 1xdi_A          242 KNARAASVTRT-GAGVLVTM---TDGR--TVEGSHALMTIGSVPNTSGLGLERVGIQLGRGNYLTVDRVSRTLATGIYAA  315 (499)
T ss_dssp             TTCCEEEEEEC-SSSEEEEE---TTSC--EEEESEEEECCCEEECCSSSCTTTTTCCCBTTTBCCCCSSSBCSSTTEEEC
T ss_pred             eCCEEEEEEEe-CCEEEEEE---CCCc--EEEcCEEEECCCCCcCCCcCCchhcCceECCCCCEEECCCcccCCCCEEEE
Confidence            99999999875 34566665   3676  799999999999999999866688899999889999999999999999999


Q ss_pred             CCcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccc
Q psy14461        379 GGIVHGKPNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNL  458 (535)
Q Consensus       379 GD~~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~  458 (535)
                      |||+ +.+++++.|.+||++||.||+|.....+++..+|+++|++|++++||+||+||++.+.  ++.+...++....++
T Consensus       316 GD~~-~~~~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~g~--~~~~~~~~~~~~~~~  392 (499)
T 1xdi_A          316 GDCT-GLLPLASVAAMQGRIAMYHALGEGVSPIRLRTVAATVFTRPEIAAVGVPQSVIDAGSV--AARTIMLPLRTNARA  392 (499)
T ss_dssp             SGGG-TSCSCHHHHHHHHHHHHHHHTTCCCCCCCGGGCEEEECSSSEEEEEESCHHHHHHTSS--CEEEEEEESTTSHHH
T ss_pred             eccC-CCcccHHHHHHHHHHHHHHhcCCCCccCCCCCCcEEEEecCCceEeCCCHHHHHhCCC--CEEEEEEecCcccce
Confidence            9999 8888999999999999999998644456788899999999999999999999998854  788877777665554


Q ss_pred             cCCCCCcchhhhhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461        459 LDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT  535 (535)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~  535 (535)
                      . ..                      +++.+|+|+++|+++++|||+|++|++|.|+|+.+++||++++|++||.++
T Consensus       393 ~-~~----------------------~~~~g~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~l~~~  446 (499)
T 1xdi_A          393 K-MS----------------------EMRHGFVKIFCRRSTGVVIGGVVVAPIASELILPIAVAVQNRITVNELAQT  446 (499)
T ss_dssp             H-HT----------------------TCSSCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHHTCBHHHHHTS
T ss_pred             e-ec----------------------CCCceEEEEEEECCCCEEEEEEEECCchHHHHHHHHHHHHCCCCHHHHhcc
Confidence            3 11                      246899999999999999999999999999999999999999999999764

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=100.00  E-value=2.3e-58  Score=487.00  Aligned_cols=380  Identities=16%  Similarity=0.167  Sum_probs=305.0

Q ss_pred             EEEeeCCccHHHHHHHHHhh--CCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHH
Q psy14461         90 YLDRIGDEGILLEEELKRQT--NQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRF  167 (535)
Q Consensus        90 ~v~iiG~G~aG~~~al~~~~--~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  167 (535)
                      +|+|||+|++|+.+|.++..  ...+|+|||++++.+|.++.+|++   +++...             +.....      
T Consensus         2 KVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~---~~~~~~-------------~~~~~~------   59 (437)
T 4eqs_A            2 KIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYV---IGEVVE-------------DRRYAL------   59 (437)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCSSBCGGGHHHH---HTTSSC-------------CGGGTB------
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCcchhHHH---HcCCcc-------------chhhhh------
Confidence            47999999999999976544  447899999999999988888766   332210             000000      


Q ss_pred             HHHHHHHHHHHHHhcCcEEEEeE-EEEec--CCEEEEce------eEEEcceEEEeeCceecC-CCCCCce---echhhH
Q psy14461        168 CIRAKNDSMRELKALGIDIVRTA-AAFTN--PHTIKLSN------RSVTGFNFLLAVERRCLP-EPRNSAL---ISADDL  234 (535)
Q Consensus       168 ~~~~~~~~~~~~~~~gV~~~~g~-~~~~~--~~~v~~~~------~~~~~d~lViATGs~p~~-~i~G~~v---~~~~~~  234 (535)
                          ....+.++++.+|+++.+. +..++  .+.+.+..      .++.||+||||||++|+. ++||+.+   .+.++.
T Consensus        60 ----~~~~~~~~~~~~i~~~~~~~V~~id~~~~~~~~~~~~~~~~~~~~yd~lVIATGs~p~~p~i~g~~~~~~~~~~~~  135 (437)
T 4eqs_A           60 ----AYTPEKFYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSLGFESDITFTLRNLEDT  135 (437)
T ss_dssp             ----CCCHHHHHHHHCCEEEETEEEEEEETTTTEEEEEETTTTEEEEEECSEEEECCCEEECCCCCCCTTEECCSSHHHH
T ss_pred             ----hcCHHHHHHhcCCEEEeCCeEEEEEccCcEEEEEeccCCceEEEEcCEEEECCCCccccccccCceEEeeccHHHH
Confidence                0011234556799988764 44443  45565532      578999999999999998 8988433   344444


Q ss_pred             Hhcc-----CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEE
Q psy14461        235 FRLG-----AWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVI  307 (535)
Q Consensus       235 ~~~~-----~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~  307 (535)
                      ..++     ..+++++|||||++|+|+|..|+++|.+||++++ +++++.+++++.+.+.+.++++||++ +++++++++
T Consensus       136 ~~l~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ll~~~d~~~~~~~~~~l~~~gV~i~~~~~v~~~~  215 (437)
T 4eqs_A          136 DAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRLNEEINAIN  215 (437)
T ss_dssp             HHHHHHHHHHTCCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCCSTTSCGGGGHHHHHHHHHTTCCEEESCCEEEEE
T ss_pred             HHHHHhhhccCCcEEEEECCccchhhhHHHHHhcCCcceeeeeeccccccccchhHHHHHHHhhccceEEEeccEEEEec
Confidence            4432     3478999999999999999999999999999999 99999999999999999999999999 999999886


Q ss_pred             EeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCC----
Q psy14461        308 SSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVH----  383 (535)
Q Consensus       308 ~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~----  383 (535)
                      ..     .+.+   .+|+  ++++|.|++|+|++||++++  +.+|++++++|+|.||+++|||.|||||+|||+.    
T Consensus       216 ~~-----~v~~---~~g~--~~~~D~vl~a~G~~Pn~~~~--~~~gl~~~~~G~I~vd~~~~Ts~p~IyA~GDva~~~~~  283 (437)
T 4eqs_A          216 GN-----EITF---KSGK--VEHYDMIIEGVGTHPNSKFI--ESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIATSHYR  283 (437)
T ss_dssp             TT-----EEEE---TTSC--EEECSEEEECCCEEESCGGG--TTSSCCCCTTSCEECCTTCBCSSTTEEECGGGEEEEBS
T ss_pred             CC-----eeee---cCCe--EEeeeeEEEEeceecCcHHH--HhhhhhhccCCcEecCCCccCCCCCEEEEEEccCcccc
Confidence            42     3566   3787  89999999999999999876  7889999999999999999999999999999983    


Q ss_pred             -----CCCCcHHHHHHHHHHHHHHHhCCCC-CCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCccc
Q psy14461        384 -----GKPNNASMAAISARLIIERLYGMQD-QLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDN  457 (535)
Q Consensus       384 -----~~~~~~~~A~~~g~~aa~~i~g~~~-~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~  457 (535)
                           ..+.+++.|.+||++||+||+|.+. ...++..+|++.|++|++++||+||+||++.    ++++....+....+
T Consensus       284 ~~~~~~~~~~a~~A~~~g~~~a~ni~g~~~~~~~~~~~~~~~~~~~p~ia~vGlte~~a~~~----~~~~~~~~~~~~~~  359 (437)
T 4eqs_A          284 HVDLPASVPLAWGAHRAASIVAEQIAGNDTIEFKGFLGNNIVKFFDYTFASVGVKPNELKQF----DYKMVEVTQGAHAN  359 (437)
T ss_dssp             SSSSEECCCSHHHHHHHHHHHHHHHHSCTTCCCCCBCCCEEEEETTEEEEEEESCGGGGGGS----CEEEEEEEEESSCT
T ss_pred             cCCccccchhHHHHHHHHHHHHHHHcCCCCcccccceeEEeeeeccceEEEeeCCHHHHHhC----CceEEEEecCCchh
Confidence                 0245789999999999999999764 3446777899999999999999999999876    57666554433222


Q ss_pred             ccCCCCCcchhhhhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCc-hhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461        458 LLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQN-VAGMIFGYSLALRKFLTKAELDGT  535 (535)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~-a~e~i~~~~~~i~~~~t~~~l~~~  535 (535)
                      .+ +                       ++++||+||++|++|++|||+|++|++ |.|+|+.+++||++++|++||.++
T Consensus       360 ~~-~-----------------------~~~~g~~Kli~d~~~~~ilGa~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~  414 (437)
T 4eqs_A          360 YY-P-----------------------GNSPLHLRVYYDTSNRQILRAAAVGKEGADKRIDVLSMAMMNQLTVDELTEF  414 (437)
T ss_dssp             TS-S-----------------------SCCEEEEEEEEETTTCBEEEEEEEESSSHHHHHHHHHHHHHTTCBGGGGGGC
T ss_pred             hc-C-----------------------CCCcEEEEEEEECCCCEEEEEEEECcCCHHHHHHHHHHHHHcCCcHHHHhcC
Confidence            22 2                       257899999999999999999999985 999999999999999999999864

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=100.00  E-value=7.7e-56  Score=473.62  Aligned_cols=420  Identities=17%  Similarity=0.156  Sum_probs=339.9

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccccc---ccccccc----cccchhh-ccc--ccccccccccCH
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKK---RRLYYPV----AMSDLEL-EQD--STSALNVTIRNW  157 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~---~l~~~~~----~i~~~~~-~~~--~~~~~~~~~~~~  157 (535)
                      .++|+|||+|++|+.+|+.+...+.+|+|||+++.+++...   .+|....    ....... .+.  +........+++
T Consensus         5 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~   84 (478)
T 1v59_A            5 SHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVNGDIKINV   84 (478)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGGGTEEECSCEEECH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCcCCccceeccHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCccCH
Confidence            36899999999999999988888999999999765543210   0110000    0000000 000  110001335688


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEc---e--eE------EEcceEEEeeCceecCCCCC-
Q psy14461        158 NAATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLS---N--RS------VTGFNFLLAVERRCLPEPRN-  225 (535)
Q Consensus       158 ~~l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~---~--~~------~~~d~lViATGs~p~~~i~G-  225 (535)
                      .++..+....++.+...+...+++.||+++.+++.+.+++.+.+.   +  .+      +.||+||||||++|+. +|| 
T Consensus        85 ~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~v~V~~~~G~~~~~~~~~~i~~d~lViAtGs~p~~-~~g~  163 (478)
T 1v59_A           85 ANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSFEDETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVTP-FPGI  163 (478)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEESSSSEEEEECCTTCTTCCSSCEEEEEEEEEECCCEEECC-CTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCeEEEEecCCCcccccccceEEeCEEEECcCCCCCC-CCCC
Confidence            999888888888888777788888999999999888777777763   2  35      9999999999999965 344 


Q ss_pred             ----CceechhhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-c
Q psy14461        226 ----SALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-Q  299 (535)
Q Consensus       226 ----~~v~~~~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~  299 (535)
                          ..++++++++.+...+++++|||||++|+|+|..|+++|.+||++++ +++++.+++++.+.+.+.+++.||++ +
T Consensus       164 ~~~~~~v~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~  243 (478)
T 1v59_A          164 EIDEEKIVSSTGALSLKEIPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGASMDGEVAKATQKFLKKQGLDFKL  243 (478)
T ss_dssp             CCCSSSEECHHHHTTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSSSCHHHHHHHHHHHHHTTCEEEC
T ss_pred             CCCCceEEcHHHHHhhhccCceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCccccccCHHHHHHHHHHHHHCCCEEEe
Confidence                35889999998888899999999999999999999999999999999 99999999999999999999999999 9


Q ss_pred             ceEEEEEEEe-CCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEe
Q psy14461        300 CCVIEKVISS-FDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAV  378 (535)
Q Consensus       300 ~~~v~~i~~~-~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~  378 (535)
                      ++++++++.. +++.+.+++.+..+|+..++++|.|++|+|++||++.+.++.+|++++++|+|.||+++||+.|+|||+
T Consensus       244 ~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~IyA~  323 (478)
T 1v59_A          244 STKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPYIAGLGAEKIGLEVDKRGRLVIDDQFNSKFPHIKVV  323 (478)
T ss_dssp             SEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECSCEEECCTTSCTTTTTCCBCTTSCBCCCTTSBCSSTTEEEC
T ss_pred             CCEEEEEEEecCCCeEEEEEEEcCCCCceEEECCEEEECCCCCcCCCCCCchhcCceeCCCCCEeECcCCccCCCCEEEe
Confidence            9999999872 134456666421234334799999999999999998444588899999899999999999999999999


Q ss_pred             CCcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccc
Q psy14461        379 GGIVHGKPNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNL  458 (535)
Q Consensus       379 GD~~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~  458 (535)
                      |||+ +.+++.+.|.+||++||+||++.. .++++..+|++.|++|++++||+||+||++.+.  ++.+...++....+.
T Consensus       324 GD~~-~~~~~~~~A~~~g~~aa~~i~~~~-~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~g~--~~~~~~~~~~~~~~~  399 (478)
T 1v59_A          324 GDVT-FGPMLAHKAEEEGIAAVEMLKTGH-GHVNYNNIPSVMYSHPEVAWVGKTEEQLKEAGI--DYKIGKFPFAANSRA  399 (478)
T ss_dssp             GGGS-SSCCCHHHHHHHHHHHHHHHHHSC-CCCCTTSCCEEECSSSEEEEEECCHHHHHHTTC--CEEEEEEEGGGCHHH
T ss_pred             eccC-CCcccHHHHHHHHHHHHHHHcCCC-CCCCCCCCCEEEEcCCcEEEEECCHHHHHHcCC--CEEEEEEecccchhh
Confidence            9999 788899999999999999999854 346788899999999999999999999998743  677777666654443


Q ss_pred             cCCCCCcchhhhhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461        459 LDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT  535 (535)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~  535 (535)
                      . .                      .+++.+|+|+++++++++|||+|++|++|.|+|+.++++|++++|++||.++
T Consensus       400 ~-~----------------------~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~  453 (478)
T 1v59_A          400 K-T----------------------NQDTEGFVKILIDSKTERILGAHIIGPNAGEMIAEAGLALEYGASAEDVARV  453 (478)
T ss_dssp             H-H----------------------TTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTS
T ss_pred             h-h----------------------cCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhC
Confidence            2 1                      1146799999999989999999999999999999999999999999999764

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=2.2e-56  Score=475.05  Aligned_cols=412  Identities=17%  Similarity=0.205  Sum_probs=339.4

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccc---cccccccc----cccchhhcccc---cc-cccccccCH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRK---KRRLYYPV----AMSDLELEQDS---TS-ALNVTIRNW  157 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~---~~l~~~~~----~i~~~~~~~~~---~~-~~~~~~~~~  157 (535)
                      ++++|||+|++|+.+|.++...+.+|+|||++ .+++..   +.+|...+    .+.........   +. ......++|
T Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~-~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~   84 (458)
T 1lvl_A            6 TTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ-ALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVASPRLDI   84 (458)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECSS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCCCCCH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCEEEEEccC-CCCCcCCCcCcHhHHHHHHHHHHHHHHhhcccccccCcccCCCccCH
Confidence            57899999999999999888888999999994 332210   00111000    00000000000   00 012346789


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEceeEEEcceEEEeeCceecC-C-CCC-CceechhhH
Q psy14461        158 NAATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAVERRCLP-E-PRN-SALISADDL  234 (535)
Q Consensus       158 ~~l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~~~~~~d~lViATGs~p~~-~-i~G-~~v~~~~~~  234 (535)
                      .++..+.++.++.+...+...++..||+++.|++.+.+++++.+.+.++.||+||||||++|+. + +|. ..+++++++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~v~~~~~~~d~lviATGs~p~~~~~~~~~~~v~~~~~~  164 (458)
T 1lvl_A           85 GQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLDGKQVEVDGQRIQCEHLLLATGSSSVELPMLPLGGPVISSTEA  164 (458)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEEEEETTEEEETTEEEECSEEEECCCEEECCBTTBCCBTTEECHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEccCCEEEEeeEEEEeCEEEEeCCCCCCCCCCCCccCcEecHHHH
Confidence            9999999999998888888888999999999998888889999877789999999999999987 5 555 468899999


Q ss_pred             HhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCC
Q psy14461        235 FRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDG  312 (535)
Q Consensus       235 ~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~  312 (535)
                      +.+...+++++|||||++|+|+|..|+++|.+||++++ +++++.+++++.+.+.+.+++.||++ +++++++++.   +
T Consensus       165 ~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~---~  241 (458)
T 1lvl_A          165 LAPKALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPTYDSELTAPVAESLKKLGIALHLGHSVEGYEN---G  241 (458)
T ss_dssp             TCCSSCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEETTCEEEEEET---T
T ss_pred             hhhhccCCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEEECCEEEEEEe---C
Confidence            98888899999999999999999999999999999999 99999999999999999999999999 9999999975   2


Q ss_pred             cEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCCCcHHHH
Q psy14461        313 MKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMA  392 (535)
Q Consensus       313 ~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~~~~~~A  392 (535)
                      .+.++.   .+|++.++++|.|++|+|++||++++.++.+|++++++ +|.||+++||+.|+|||+|||+ +.+.+++.|
T Consensus       242 ~v~v~~---~~G~~~~i~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~-~i~vd~~~~t~~~~Iya~GD~~-~~~~~~~~A  316 (458)
T 1lvl_A          242 CLLAND---GKGGQLRLEADRVLVAVGRRPRTKGFNLECLDLKMNGA-AIAIDERCQTSMHNVWAIGDVA-GEPMLAHRA  316 (458)
T ss_dssp             EEEEEC---SSSCCCEECCSCEEECCCEEECCSSSSGGGSCCCEETT-EECCCTTCBCSSTTEEECGGGG-CSSCCHHHH
T ss_pred             CEEEEE---CCCceEEEECCEEEECcCCCcCCCCCCcHhcCCcccCC-EEeECCCCcCCCCCEEEeeccC-CCcccHHHH
Confidence            244431   35643489999999999999999886668889998877 8999999999999999999999 788999999


Q ss_pred             HHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcchhhhhh
Q psy14461        393 AISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVC  472 (535)
Q Consensus       393 ~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  472 (535)
                      .+||++||.||+|.. ..+++..+|+++|++|+++++|++|++|++.+.  ++.+....+....+.. .           
T Consensus       317 ~~~g~~aa~~i~g~~-~~~~~~~~p~~~~~~p~~a~vG~~e~~a~~~g~--~~~~~~~~~~~~~~~~-~-----------  381 (458)
T 1lvl_A          317 MAQGEMVAEIIAGKA-RRFEPAAIAAVCFTDPEVVVVGKTPEQASQQGL--DCIVAQFPFAANGRAM-S-----------  381 (458)
T ss_dssp             HHHHHHHHHHHTTCC-CCCCCSCCCEEECSSSEEEEEECCHHHHHHTTC--CEEEEEEEGGGCHHHH-H-----------
T ss_pred             HHHHHHHHHHhcCCC-ccCCCCCCCEEEECCCCeEEEeCCHHHHHHcCC--CEEEEEEECccchhhh-h-----------
Confidence            999999999999854 456788899999999999999999999998743  6777666665444432 1           


Q ss_pred             ccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461        473 LKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT  535 (535)
Q Consensus       473 ~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~  535 (535)
                                 .+.+.||+|+++|+++++|||+|++|++|.|+|+.++++|++++|++||.++
T Consensus       382 -----------~~~~~g~~kl~~d~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~~~~~l~~~  433 (458)
T 1lvl_A          382 -----------LESKSGFVRVVARRDNHLILGWQAVGVAVSELSTAFAQSLEMGACLEDVAGT  433 (458)
T ss_dssp             -----------TTCCCCEEEEEEETTTCBEEEEEEEETTGGGHHHHHHHHHHHTCBHHHHHTS
T ss_pred             -----------cCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhC
Confidence                       1146799999999999999999999999999999999999999999999864

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=100.00  E-value=1.4e-55  Score=470.26  Aligned_cols=410  Identities=20%  Similarity=0.223  Sum_probs=335.2

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccccc--c-cccccc----cccchhhccc---ccccccccccCHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKK--R-RLYYPV----AMSDLELEQD---STSALNVTIRNWN  158 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~--~-l~~~~~----~i~~~~~~~~---~~~~~~~~~~~~~  158 (535)
                      ++|+|||+|++|+++|.++...+.+|+|||++. +++...  + +|....    .+.......+   +.. ......+|.
T Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~-~GG~~~~~g~ip~k~l~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~   82 (467)
T 1zk7_A            5 VQVAVIGSGGAAMAAALKAVEQGAQVTLIERGT-IGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIA-ATVPTIDRS   82 (467)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS-TTHHHHHHSHHHHHHHHHHHHHHHHHHCCTTTTTSC-CCCCCCCHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCEEEEEeCCC-CCccccCCCccchHHHHHHHHHHHHHhhhhhcCCcc-CCCCccCHH
Confidence            578999999999999998888899999999984 322100  0 000000    0000000000   000 113356788


Q ss_pred             HHHHHHHHHHHHHHH-HHHHHHHhc-CcEEEEeEEEEecCCEEEEc---e--eEEEcceEEEeeCceecC-CCCC---Cc
Q psy14461        159 AATKLIKRFCIRAKN-DSMRELKAL-GIDIVRTAAAFTNPHTIKLS---N--RSVTGFNFLLAVERRCLP-EPRN---SA  227 (535)
Q Consensus       159 ~l~~~~~~~~~~~~~-~~~~~~~~~-gV~~~~g~~~~~~~~~v~~~---~--~~~~~d~lViATGs~p~~-~i~G---~~  227 (535)
                      .+..+.++..+.+.. .+...+++. +|+++.+++.+.+.+++++.   +  .++.||+||||||++|+. ++||   ..
T Consensus        83 ~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~i~G~~~~~  162 (467)
T 1zk7_A           83 KLLAQQQARVDELRHAKYEGILGGNPAITVVHGEARFKDDQSLTVRLNEGGERVVMFDRCLVATGASPAVPPIPGLKESP  162 (467)
T ss_dssp             HHHHHHHHHHHHHHHHHTHHHHTTCTTEEEEEEEEEEEETTEEEEEETTSSEEEEECSEEEECCCEEECCCCCTTTTTSC
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHhccCCeEEEEEEEEEccCCEEEEEeCCCceEEEEeCEEEEeCCCCCCCCCCCCCCcCc
Confidence            888887777666653 345667777 99999999988888877773   3  579999999999999999 8998   35


Q ss_pred             eechhhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEE
Q psy14461        228 LISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEK  305 (535)
Q Consensus       228 v~~~~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~  305 (535)
                      +++.++++.+...+++++|||+|++|+|+|..|+++|.+||++++ +.+++ +++++.+.+.+.+++.||++ ++++|++
T Consensus       163 ~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~l~~~l~~~Gv~i~~~~~v~~  241 (467)
T 1zk7_A          163 YWTSTEALASDTIPERLAVIGSSVVALELAQAFARLGSKVTVLARNTLFFR-EDPAIGEAVTAAFRAEGIEVLEHTQASQ  241 (467)
T ss_dssp             CBCHHHHHHCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTT-SCHHHHHHHHHHHHHTTCEEETTCCEEE
T ss_pred             eecHHHHhcccccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCccCC-CCHHHHHHHHHHHHhCCCEEEcCCEEEE
Confidence            789999999888899999999999999999999999999999999 99999 99999999999999999999 9999999


Q ss_pred             EEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCC
Q psy14461        306 VISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGK  385 (535)
Q Consensus       306 i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~  385 (535)
                      ++.+ ++.+.|++    ++.  ++++|.|++|+|++||++.+.++..+++++++|+|.||++++|+.|+|||+|||+ +.
T Consensus       242 i~~~-~~~~~v~~----~~~--~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~-~~  313 (467)
T 1zk7_A          242 VAHM-DGEFVLTT----THG--ELRADKLLVATGRTPNTRSLALDAAGVTVNAQGAIVIDQGMRTSNPNIYAAGDCT-DQ  313 (467)
T ss_dssp             EEEE-TTEEEEEE----TTE--EEEESEEEECSCEEESCTTSCGGGGTCCBCTTSCBCCCTTCBCSSTTEEECSTTB-SS
T ss_pred             EEEe-CCEEEEEE----CCc--EEEcCEEEECCCCCcCCCcCCchhcCCcCCCCCCEEECCCcccCCCCEEEEeccC-CC
Confidence            9875 44455665    344  7999999999999999987656788999988999999999999999999999999 78


Q ss_pred             CCcHHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCc
Q psy14461        386 PNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPE  465 (535)
Q Consensus       386 ~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  465 (535)
                      +.+++.|.+||++||.||++.. ...++..+|++.|++|+++++|+++++|++.+.  ++.+...++....+.. ..   
T Consensus       314 ~~~~~~A~~~g~~aa~~i~~~~-~~~~~~~~p~~~~~~~~~a~vG~~~~~a~~~g~--~~~~~~~~~~~~~~~~-~~---  386 (467)
T 1zk7_A          314 PQFVYVAAAAGTRAAINMTGGD-AALDLTAMPAVVFTDPQVATVGYSEAEAHHDGI--ETDSRTLTLDNVPRAL-AN---  386 (467)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTCC-CCCCCTTCEEEECSSSEEEEEECCHHHHHHTTC--CEEEEEEEGGGCHHHH-HT---
T ss_pred             cccHHHHHHHHHHHHHHHcCCC-cccCCCCCCEEEecCCceEEEecCHHHHHhcCC--CeEEEEEecccchhhh-hc---
Confidence            8899999999999999999863 456778899999999999999999999998743  6777777776554443 11   


Q ss_pred             chhhhhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461        466 NFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT  535 (535)
Q Consensus       466 ~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~  535 (535)
                                         +++.+|+|+++++++++|||+|++|++|.|+|+.++++|++++|++||.++
T Consensus       387 -------------------~~~~~~~kl~~~~~~~~ilG~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~  437 (467)
T 1zk7_A          387 -------------------FDTRGFIKLVIEEGSHRLIGVQAVAPEAGELIQTAALAIRNRMTVQELADQ  437 (467)
T ss_dssp             -------------------TCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTS
T ss_pred             -------------------CCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcC
Confidence                               146899999999999999999999999999999999999999999999864

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=100.00  E-value=1.8e-55  Score=467.76  Aligned_cols=414  Identities=18%  Similarity=0.186  Sum_probs=342.8

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccccc--c-ccccccc-ccchhhcc--ccccc-ccccccCHHHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKK--R-RLYYPVA-MSDLELEQ--DSTSA-LNVTIRNWNAAT  161 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~--~-l~~~~~~-i~~~~~~~--~~~~~-~~~~~~~~~~l~  161 (535)
                      ++++|||+|++|+.+|.++...+.+|+|||+++.+++...  + +|....- ........  ..+.. ......+|..+.
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~   81 (455)
T 2yqu_A            2 YDLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKALGGTCLRVGCIPSKALLETTERIYEAKKGLLGAKVKGVELDLPALM   81 (455)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHCCTTEEECCEEECHHHHH
T ss_pred             CCEEEECCChhHHHHHHHHHHCCCeEEEEeCCCCCCCccceecchhHHHHHHHHHHHHHHhhhcCCcccCCCccCHHHHH
Confidence            5899999999999999988888999999999976543210  0 1110000 00000000  00000 112356899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEc--eeEEEcceEEEeeCceecC-CCCC---CceechhhHH
Q psy14461        162 KLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLS--NRSVTGFNFLLAVERRCLP-EPRN---SALISADDLF  235 (535)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~--~~~~~~d~lViATGs~p~~-~i~G---~~v~~~~~~~  235 (535)
                      .+.+.+.+.+...+...++..+|+++.+++.+.+++++.+.  +.++.||+||||||++|.. +++|   ..++++++++
T Consensus        82 ~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~i~~~~~~v~~~g~~~~~d~lviAtG~~p~~~~~~g~~~~~v~~~~~~~  161 (455)
T 2yqu_A           82 AHKDKVVQANTQGVEFLFKKNGIARHQGTARFLSERKVLVEETGEELEARYILIATGSAPLIPPWAQVDYERVVTSTEAL  161 (455)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCEEEESCEEESSSSEEEETTTCCEEEEEEEEECCCEEECCCTTBCCCSSSEECHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCeEEEeeCCEEEEecEEEECCCCCCCCCCCCCCCcCcEechHHhh
Confidence            98888888887777788888899999999888888888885  5689999999999999988 8888   3688999999


Q ss_pred             hccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCc
Q psy14461        236 RLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGM  313 (535)
Q Consensus       236 ~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~  313 (535)
                      .+...+++++|||||++|+|+|..|++.|.+|+++++ +.+++.+++++.+.+.+.+++.||++ +++++++++.+ ++.
T Consensus       162 ~~~~~~~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~-~~~  240 (455)
T 2yqu_A          162 SFPEVPKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRILPTMDLEVSRAAERVFKKQGLTIRTGVRVTAVVPE-AKG  240 (455)
T ss_dssp             CCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEEE-TTE
T ss_pred             ccccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCccccccCHHHHHHHHHHHHHCCCEEEECCEEEEEEEe-CCE
Confidence            8888889999999999999999999999999999999 99999999999999999999999999 99999999876 455


Q ss_pred             EEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCCCcHHHHH
Q psy14461        314 KGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAA  393 (535)
Q Consensus       314 ~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~~~~~~A~  393 (535)
                      +.+++.   +|+  ++++|.|++|+|++|++++++++.++++++++|+|.||++++|+.|+|||+|||+ +.+.+++.|.
T Consensus       241 v~v~~~---~g~--~i~~D~vv~A~G~~p~~~~l~~~~~g~~~~~~g~i~vd~~~~t~~~~iya~GD~~-~~~~~~~~A~  314 (455)
T 2yqu_A          241 ARVELE---GGE--VLEADRVLVAVGRRPYTEGLSLENAGLSTDERGRIPVDEHLRTRVPHIYAIGDVV-RGPMLAHKAS  314 (455)
T ss_dssp             EEEEET---TSC--EEEESEEEECSCEEECCTTCCGGGGTCCCCTTSCCCCCTTSBCSSTTEEECGGGS-SSCCCHHHHH
T ss_pred             EEEEEC---CCe--EEEcCEEEECcCCCcCCCCCChhhcCCccCCCCcEeECCCcccCCCCEEEEecCC-CCccCHHHHH
Confidence            666663   566  7999999999999999988656788999888899999999999999999999999 8889999999


Q ss_pred             HHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcchhhhhhc
Q psy14461        394 ISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVCL  473 (535)
Q Consensus       394 ~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  473 (535)
                      +||++||.||++.. ..+++..+|++.|++|+++++|+++++|++.+.  ++.+....+....++. .            
T Consensus       315 ~~g~~aa~~i~~~~-~~~~~~~~p~~~~~~~~~a~~G~~~~~a~~~g~--~~~~~~~~~~~~~~~~-~------------  378 (455)
T 2yqu_A          315 EEGIAAVEHMVRGF-GHVDYQAIPSVVYTHPEIAAVGYTEEELKAQGI--PYKVGKFPYSASGRAR-A------------  378 (455)
T ss_dssp             HHHHHHHHHHHHSC-CCCCGGGCCEEECSSSEEEEEECCHHHHHHHTC--CEEEEEEEGGGCHHHH-H------------
T ss_pred             HhHHHHHHHHcCCC-ccCCCCCCCEEEEcCCceEEEECCHHHHHHcCC--CEEEEEEEcccchHHH-h------------
Confidence            99999999999853 456777889999999999999999999998843  6777666665444432 0            


Q ss_pred             cCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461        474 KGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT  535 (535)
Q Consensus       474 ~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~  535 (535)
                                .+++.+|+|+++|+++++|||+|++|+.|.|+|+.++++|++++|++||.++
T Consensus       379 ----------~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~~~~~  430 (455)
T 2yqu_A          379 ----------MGETEGFIKVLAHAKTDRILGVHGIGARVGDVLAEAALALFFKASAEDLGRA  430 (455)
T ss_dssp             ----------HTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHHS
T ss_pred             ----------cCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhc
Confidence                      1146799999999999999999999999999999999999999999998753

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=100.00  E-value=2e-55  Score=475.11  Aligned_cols=418  Identities=20%  Similarity=0.173  Sum_probs=326.1

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccccc--c-ccccccc-ccc---hhhcccccccccccccCHHHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKK--R-RLYYPVA-MSD---LELEQDSTSALNVTIRNWNAAT  161 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~--~-l~~~~~~-i~~---~~~~~~~~~~~~~~~~~~~~l~  161 (535)
                      ++|+|||+|++|+.+|..+...+.+|+|||+++.+++...  + +|...+. .+.   .....+.+..       |..+.
T Consensus        44 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~-------~~~~~  116 (523)
T 1mo9_A           44 YDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYW-------FPDMT  116 (523)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTSTT-------CCCCT
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCcccccCcCchHHHHHHHHHHHHHhhhhhcCc-------HHHHH
Confidence            6789999999999999988888999999999985533210  0 1211000 000   0000000000       11111


Q ss_pred             HH---HHHHHHHHHHHHH---HHH-----HhcCcEEE-EeEEEEecCCEEEEceeEEEcceEEEeeCceecC-CCCC---
Q psy14461        162 KL---IKRFCIRAKNDSM---REL-----KALGIDIV-RTAAAFTNPHTIKLSNRSVTGFNFLLAVERRCLP-EPRN---  225 (535)
Q Consensus       162 ~~---~~~~~~~~~~~~~---~~~-----~~~gV~~~-~g~~~~~~~~~v~~~~~~~~~d~lViATGs~p~~-~i~G---  225 (535)
                      .+   .+.....+...+.   ..+     +..+|+++ .+++.+++.+++.+.+..+.||+||||||++|.. ++||   
T Consensus       117 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~v~~~g~~~~~d~lViATGs~p~~p~i~G~~~  196 (523)
T 1mo9_A          117 EKVVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDNHTVEAAGKVFKAKNLILAVGAGPGTLDVPGVNA  196 (523)
T ss_dssp             TCCCCHHHHHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEETTEEEETTEEEEBSCEEECCCEECCCCCSTTTTS
T ss_pred             hhhhhHHHHHHHHHhhhhhhhhhhhhcccccCCcEEEEeeEEEEeeCCEEEECCEEEEeCEEEECCCCCCCCCCCCCccc
Confidence            11   2233333333223   455     77899998 8888888888888877789999999999999998 8998   


Q ss_pred             CceechhhHH-hccCCC-CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cce
Q psy14461        226 SALISADDLF-RLGAWP-GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCC  301 (535)
Q Consensus       226 ~~v~~~~~~~-~~~~~~-k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~  301 (535)
                      .+++++++++ .+...+ ++++|||+|++|+|+|..|++.|.+|+++++ +.+++.+++++.+.+.+.+++.||++ +++
T Consensus       197 ~~v~~~~~~~~~l~~~~g~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~  276 (523)
T 1mo9_A          197 KGVFDHATLVEELDYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLIKDNETRAYVLDRMKEQGMEIISGS  276 (523)
T ss_dssp             BTEEEHHHHHHHCCSCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTCCSHHHHHHHHHHHHHTTCEEESSC
T ss_pred             CcEeeHHHHHHHHHhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCcccccccHHHHHHHHHHHHhCCcEEEECC
Confidence            3488999999 888778 9999999999999999999999999999999 99999999999999999999999999 999


Q ss_pred             EEEEEEEeCCCc---EEEEEecCCCCCceEEEcCEEEEccCCCCCCC-CCCccccCeeecCCCceEcCCCCCcCCCCEEE
Q psy14461        302 VIEKVISSFDGM---KGVRGFHPESKEPFADVFKTVVNAMEKKFDFA-ALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFA  377 (535)
Q Consensus       302 ~v~~i~~~~~~~---~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~-~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA  377 (535)
                      +|++++.++++.   +.|++   .+|+ .++++|.|++|+|++||++ ++  +.+|++++++|+|.||+++||+.|+|||
T Consensus       277 ~V~~i~~~~~~~v~~~~v~~---~~G~-~~i~aD~Vv~A~G~~p~~~~~l--~~~gl~~~~~G~i~Vd~~~~t~~~~IyA  350 (523)
T 1mo9_A          277 NVTRIEEDANGRVQAVVAMT---PNGE-MRIETDFVFLGLGEQPRSAELA--KILGLDLGPKGEVLVNEYLQTSVPNVYA  350 (523)
T ss_dssp             EEEEEEECTTSBEEEEEEEE---TTEE-EEEECSCEEECCCCEECCHHHH--HHHTCCBCTTSCBCCCTTSBCSSTTEEE
T ss_pred             EEEEEEEcCCCceEEEEEEE---CCCc-EEEEcCEEEECcCCccCCccCH--HHcCCccCCCCCEEECCCCccCCCCEEE
Confidence            999998753333   45665   3563 3699999999999999998 55  7789999889999999999999999999


Q ss_pred             eCCcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCC---
Q psy14461        378 VGGIVHGKPNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPT---  454 (535)
Q Consensus       378 ~GD~~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~---  454 (535)
                      +|||+ +.+.+++.|.+||++||.||+|.. ..+++..+|+++|++|++++||+||+||++.+.  ++.+...++..   
T Consensus       351 ~GD~~-~~~~~~~~A~~~g~~aa~~i~g~~-~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~g~--~~~~~~~~~~~~~~  426 (523)
T 1mo9_A          351 VGDLI-GGPMEMFKARKSGCYAARNVMGEK-ISYTPKNYPDFLHTHYEVSFLGMGEEEARAAGH--EIVTIKMPPDTENG  426 (523)
T ss_dssp             CGGGG-CSSCSHHHHHHHHHHHHHHHTTCC-CCCCCCSCCEEEESSSEEEEEECCHHHHHHTTC--CEEEEEESCCSTTT
T ss_pred             EeecC-CCcccHHHHHHHHHHHHHHHcCCC-CCCCCCCCCeEEECCCceEEEeCCHHHHHhCCC--CEEEEEEecccccc
Confidence            99999 888999999999999999999854 445678899999999999999999999998854  67777666654   


Q ss_pred             cccccCCCCCcchhhhhhccCCcccccccc--cCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHH
Q psy14461        455 FDNLLDPLLPENFVKLVCLKGGERVLGIHV--IGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAEL  532 (535)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l  532 (535)
                      ...+. |.++.           +.-++...  +++.||+|+++|+++++|||+|++|++|.|+|+.+++||++++|++||
T Consensus       427 ~~~~~-~~~~~-----------~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l  494 (523)
T 1mo9_A          427 LNVAL-PASDR-----------TMLYAFGKGTAHMSGFQKIVIDAKTRKVLGAHHVGYGAKDAFQYLNVLIKQGLTVDEL  494 (523)
T ss_dssp             TCSSC-SCCTT-----------THHHHHSTTTGGGGCEEEEEEETTTCBEEEEEEEESSCHHHHHHHHHHHHTTCBHHHH
T ss_pred             ccccc-ccccc-----------cccceEEeecCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHH
Confidence            00111 21110           00011112  257899999999999999999999999999999999999999999999


Q ss_pred             cCC
Q psy14461        533 DGT  535 (535)
Q Consensus       533 ~~~  535 (535)
                      .++
T Consensus       495 ~~~  497 (523)
T 1mo9_A          495 GDM  497 (523)
T ss_dssp             HTS
T ss_pred             HhC
Confidence            764

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=100.00  E-value=2.1e-54  Score=458.92  Aligned_cols=384  Identities=18%  Similarity=0.144  Sum_probs=296.8

Q ss_pred             EEEEeeCCccHHHHHHHHHhhC--CCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTN--QRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKR  166 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~--~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  166 (535)
                      .+|+|||+|++|+.+|..+...  +.+|+|||+++.+++.++++|++   +.+.              .++..+..+.. 
T Consensus         4 ~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~~~~~p~~---~~~~--------------~~~~~~~~~~~-   65 (449)
T 3kd9_A            4 KKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAPCGIPYV---VEGL--------------STPDKLMYYPP-   65 (449)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC------------------------------------------
T ss_pred             CcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccCCcCCccc---cCCC--------------CCHHHhhhcCH-
Confidence            4789999999999999766554  78999999999988888888776   2321              11111111111 


Q ss_pred             HHHHHHHHHHHHHHhcCcEEEEe-EEEEecCCEEEE--ce--eEEEcceEEEeeCceecC-CCCC---Ccee---chhhH
Q psy14461        167 FCIRAKNDSMRELKALGIDIVRT-AAAFTNPHTIKL--SN--RSVTGFNFLLAVERRCLP-EPRN---SALI---SADDL  234 (535)
Q Consensus       167 ~~~~~~~~~~~~~~~~gV~~~~g-~~~~~~~~~v~~--~~--~~~~~d~lViATGs~p~~-~i~G---~~v~---~~~~~  234 (535)
                               ....+..+|+++.+ ++..++.....+  .+  .++.||+||||||++|+. ++||   ++++   +.++.
T Consensus        66 ---------~~~~~~~gi~v~~~~~v~~i~~~~~~v~~~~g~~~~~~d~lviAtG~~p~~p~i~G~~~~~v~~~~~~~~~  136 (449)
T 3kd9_A           66 ---------EVFIKKRGIDLHLNAEVIEVDTGYVRVRENGGEKSYEWDYLVFANGASPQVPAIEGVNLKGVFTADLPPDA  136 (449)
T ss_dssp             ---------CTHHHHTTCEEETTCEEEEECSSEEEEECSSSEEEEECSEEEECCCEEECCCSCBTTTSTTEECSCSTHHH
T ss_pred             ---------HHHHHhcCcEEEecCEEEEEecCCCEEEECCceEEEEcCEEEECCCCCCCCCCCCCCCCCCEEEeCCHHHH
Confidence                     12235679999988 676666554333  33  479999999999999998 8888   3454   34555


Q ss_pred             HhccC-----CCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc-CcHHHHHHHHHhhhcCCeEE-cceEEEEE
Q psy14461        235 FRLGA-----WPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH-FDQEMVRILLSSLTKAGVSI-QCCVIEKV  306 (535)
Q Consensus       235 ~~~~~-----~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~-~~~~~~~~~~~~l~~~gV~i-~~~~v~~i  306 (535)
                      +.+..     .+++++|||+|++|+|+|..|+++|.+|+++++ +++++. +++++.+.+.+.+++. |++ .++.+.++
T Consensus       137 ~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~-v~i~~~~~v~~i  215 (449)
T 3kd9_A          137 LAIREYMEKYKVENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLRRSFDKEVTDILEEKLKKH-VNLRLQEITMKI  215 (449)
T ss_dssp             HHHHHHHSSSCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHTTT-SEEEESCCEEEE
T ss_pred             HHHHHHHHhcCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchhhcCHHHHHHHHHHHHhC-cEEEeCCeEEEE
Confidence            44332     568999999999999999999999999999999 999986 9999999999999999 999 99999999


Q ss_pred             EEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCC---
Q psy14461        307 ISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVH---  383 (535)
Q Consensus       307 ~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~---  383 (535)
                      +.+  +.+...+.   +|+  ++++|.|++|+|++|+++++  +.+|++++++|+|.||+++||+.|+|||+|||+.   
T Consensus       216 ~~~--~~v~~v~~---~g~--~i~~D~Vv~a~G~~p~~~l~--~~~gl~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~~  286 (449)
T 3kd9_A          216 EGE--ERVEKVVT---DAG--EYKAELVILATGIKPNIELA--KQLGVRIGETGAIWTNEKMQTSVENVYAAGDVAETRH  286 (449)
T ss_dssp             ECS--SSCCEEEE---TTE--EEECSEEEECSCEEECCHHH--HHTTCCBCTTSSBCCCTTCBCSSTTEEECSTTBCEEB
T ss_pred             ecc--CcEEEEEe---CCC--EEECCEEEEeeCCccCHHHH--HhCCccCCCCCCEEECCCCccCCCCEEEeeeeeeecc
Confidence            864  23332332   565  79999999999999999875  7889999999999999999999999999999973   


Q ss_pred             ---CC---CCcHHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCccc
Q psy14461        384 ---GK---PNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDN  457 (535)
Q Consensus       384 ---~~---~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~  457 (535)
                         +.   +++++.|.+||++||+||+|.......+..+|++.|++|++++||+||+||++.+.  ++.+..  +....+
T Consensus       287 ~~~g~~~~~~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~g~--~~~~~~--~~~~~~  362 (449)
T 3kd9_A          287 VITGRRVWVPLAPAGNKMGYVAGSNIAGKELHFPGVLGTAVTKFMDVEIGKTGLTEMEALKEGY--DVRTAF--IKASTR  362 (449)
T ss_dssp             TTTCSEECCCCHHHHHHHHHHHHHHHTTCCCCCCCBCCCEEEEETTEEEEEEECCHHHHHHTTC--CEEEEE--EEEESS
T ss_pred             ccCCceEEeccHHHHHHHHHHHHHHhcCCCccCCCcccceEEEEcCcEEEEecCCHHHHHHCCC--ceEEEE--EecCCc
Confidence               22   57899999999999999999765544555678999999999999999999998733  455443  332233


Q ss_pred             ccCCCCCcchhhhhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461        458 LLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT  535 (535)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~  535 (535)
                      +. ..                     .+++.||+||++|++|++|||+|++|++|.|+|+.+++||++++|++||.++
T Consensus       363 ~~-~~---------------------~~~~~~~~kli~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~  418 (449)
T 3kd9_A          363 PH-YY---------------------PGGREIWLKGVVDNETNRLLGVQVVGSDILPRIDTAAAMLMAGFTTKDAFFT  418 (449)
T ss_dssp             CT-TS---------------------TTCCEEEEEEEEETTTCBEEEEEEEESSCHHHHHHHHHHHHTTCBHHHHHTC
T ss_pred             cc-cC---------------------CCCceEEEEEEEECCCCEEEEEEEEChHHHHHHHHHHHHHHcCCcHHHHhhc
Confidence            22 00                     0146899999999999999999999999999999999999999999999864

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=100.00  E-value=4.8e-54  Score=456.43  Aligned_cols=380  Identities=18%  Similarity=0.157  Sum_probs=298.8

Q ss_pred             EEEEeeCCccHHHHHHHHHhhC--CCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTN--QRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKR  166 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~--~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  166 (535)
                      ++|+|||+|++|+++|..+...  +.+|+|||+++.++|.+++++++   +.+..             .++..       
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g~~~~~~~~~---~~~~~-------------~~~~~-------   59 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGGLSAY---FNHTI-------------NELHE-------   59 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCSSCCC--------------------------------------
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCcccCccchhh---hcCCC-------------CCHHH-------
Confidence            4789999999999999876655  89999999999998888887766   33210             01111       


Q ss_pred             HHHHHHHHHHHHHHhcCcEEEEe-EEEEe--cCCEEEE----ceeEEEcceEEEeeCceecC-CCCC---CceechhhH-
Q psy14461        167 FCIRAKNDSMRELKALGIDIVRT-AAAFT--NPHTIKL----SNRSVTGFNFLLAVERRCLP-EPRN---SALISADDL-  234 (535)
Q Consensus       167 ~~~~~~~~~~~~~~~~gV~~~~g-~~~~~--~~~~v~~----~~~~~~~d~lViATGs~p~~-~i~G---~~v~~~~~~-  234 (535)
                          +.......+++.+++++.+ ++..+  +.+.+.+    ++.++.||+||||||++|.. ++||   +.+++..++ 
T Consensus        60 ----~~~~~~~~~~~~gi~~~~~~~V~~id~~~~~v~v~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~~~~v~~~~~~~  135 (452)
T 3oc4_A           60 ----ARYITEEELRRQKIQLLLNREVVAMDVENQLIAWTRKEEQQWYSYDKLILATGASQFSTQIRGSQTEKLLKYKFLS  135 (452)
T ss_dssp             -----CCCCHHHHHHTTEEEECSCEEEEEETTTTEEEEEETTEEEEEECSEEEECCCCCBCCCCCBTTTCTTEEEGGGCC
T ss_pred             ----hhcCCHHHHHHCCCEEEECCEEEEEECCCCEEEEEecCceEEEEcCEEEECCCcccCCCCCCCCCCCCEEEeCCHH
Confidence                1111224456689998754 34443  4567766    33689999999999999998 8998   456655432 


Q ss_pred             -----HhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc-CcHHHHHHHHHhhhcCCeEE-cceEEEEE
Q psy14461        235 -----FRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH-FDQEMVRILLSSLTKAGVSI-QCCVIEKV  306 (535)
Q Consensus       235 -----~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~-~~~~~~~~~~~~l~~~gV~i-~~~~v~~i  306 (535)
                           +.....+++++|||+|++|+|+|..|+++|.+||++++ +++++. +++++.+.+.+.++++||++ +++.|+++
T Consensus       136 ~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i  215 (452)
T 3oc4_A          136 GALAAVPLLENSQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLLPKYFDKEMVAEVQKSLEKQAVIFHFEETVLGI  215 (452)
T ss_dssp             ----CCHHHHTCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTCCHHHHHHHHHHHHTTTEEEEETCCEEEE
T ss_pred             HHHHHHHHHhcCCEEEEECCCHHHHHHHHHHHhCCCeEEEEEccCccccccCCHHHHHHHHHHHHHcCCEEEeCCEEEEE
Confidence                 23335689999999999999999999999999999999 999885 89999999999999999999 99999999


Q ss_pred             EEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCC-
Q psy14461        307 ISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGK-  385 (535)
Q Consensus       307 ~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~-  385 (535)
                      +.. ++.+.|.+   ++|   ++++|.|++|+|++||++++  +.. ++++++|+|.||+++||+.|+|||+|||+ +. 
T Consensus       216 ~~~-~~~v~v~~---~~g---~i~aD~Vv~A~G~~p~~~~l--~~~-~~~~~~g~i~vd~~~~t~~~~IyA~GD~~-~~~  284 (452)
T 3oc4_A          216 EET-ANGIVLET---SEQ---EISCDSGIFALNLHPQLAYL--DKK-IQRNLDQTIAVDAYLQTSVPNVFAIGDCI-SVM  284 (452)
T ss_dssp             EEC-SSCEEEEE---SSC---EEEESEEEECSCCBCCCSSC--CTT-SCBCTTSCBCCCTTCBCSSTTEEECGGGB-CEE
T ss_pred             Ecc-CCeEEEEE---CCC---EEEeCEEEECcCCCCChHHH--Hhh-hccCCCCCEEECcCccCCCCCEEEEEeeE-Eec
Confidence            865 45566665   234   69999999999999999986  443 78888999999999999999999999999 43 


Q ss_pred             ---------CCcHHHHHHHHHHHHHHHhCCCCCCC-CCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCc
Q psy14461        386 ---------PNNASMAAISARLIIERLYGMQDQLM-DYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTF  455 (535)
Q Consensus       386 ---------~~~~~~A~~~g~~aa~~i~g~~~~~~-~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~  455 (535)
                               +++++.|..||++||+||++...... .+..+|+.+| +|++++||+||+||++.+.  ++.+....+.. 
T Consensus       285 ~~~~~~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~-~~~~a~vG~te~~a~~~g~--~~~~~~~~~~~-  360 (452)
T 3oc4_A          285 NEPVAETFYAPLVNNAVRTGLVVANNLEEKTHRFIGSLRTMGTKVG-DYYLASTGLTETEGLFFPQ--TLASIIVRQPA-  360 (452)
T ss_dssp             EGGGTEEECCCCHHHHHHHHHHHTTSSSSCCCCCCCCCCCEEEEET-TEEEEEEECCSGGGGGSSS--CEEEEEEEEEC-
T ss_pred             cccCCceeecchHHHHHHHHHHHHHHhcCCCccCCCccccEEEEEc-CeeEEEecCCHHHHHHCCC--ceEEEEEecCC-
Confidence                     35899999999999999998654332 4566788888 5799999999999998733  66665544432 


Q ss_pred             ccccCCCCCcchhhhhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcC-chhHHHHHHHHHHHCCCCHHHHcC
Q psy14461        456 DNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQ-NVAGMIFGYSLALRKFLTKAELDG  534 (535)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~-~a~e~i~~~~~~i~~~~t~~~l~~  534 (535)
                       +.+ +.                       .+.||+||++|++|++|||+|++|+ +|.|+|+.+++||++++|++||.+
T Consensus       361 -~~~-~~-----------------------~~~~~~kli~~~~~~~ilG~~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~  415 (452)
T 3oc4_A          361 -PPL-QH-----------------------GTEILGKLIYDKVTQRVLGAQLCSKNNCLEKINTLALSIQTGQTLTDLLQ  415 (452)
T ss_dssp             -TTT-TC-----------------------SCEEEEEEEEETTTCBEEEEEEEESSCCTHHHHHHHHHHHTTCBHHHHHT
T ss_pred             -ccC-CC-----------------------CCeEEEEEEEECCCCEEEEEEEEeCCCHHHHHHHHHHHHHcCCCHHHHHh
Confidence             222 21                       4689999999999999999999999 799999999999999999999976


Q ss_pred             C
Q psy14461        535 T  535 (535)
Q Consensus       535 ~  535 (535)
                      +
T Consensus       416 ~  416 (452)
T 3oc4_A          416 K  416 (452)
T ss_dssp             C
T ss_pred             h
Confidence            4

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=100.00  E-value=2.3e-53  Score=453.64  Aligned_cols=393  Identities=17%  Similarity=0.138  Sum_probs=286.5

Q ss_pred             EEEEeeCCccHHHHHHHHHhhC--CCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTN--QRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKR  166 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~--~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  166 (535)
                      .+|+|||+|++|+++|..+...  +.+|+|||+++.++|.++++|++   +++...             +...+..... 
T Consensus         4 ~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~~~~~gl~~~---~~g~~~-------------~~~~~~~~~~-   66 (472)
T 3iwa_A            4 KHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRISYGGCGIPYY---VSGEVS-------------NIESLQATPY-   66 (472)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC----------------------------------------------
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCcccccccccchh---hcCCCC-------------chHHhccccc-
Confidence            4789999999999999876655  89999999999999988888876   443210             1111100000 


Q ss_pred             HHHHHHHHHHHHHHhcCcEEEEe-EEEEe--cCCEEEEce------eEEEcceEEEeeCceecC-CCCC---Ccee---c
Q psy14461        167 FCIRAKNDSMRELKALGIDIVRT-AAAFT--NPHTIKLSN------RSVTGFNFLLAVERRCLP-EPRN---SALI---S  230 (535)
Q Consensus       167 ~~~~~~~~~~~~~~~~gV~~~~g-~~~~~--~~~~v~~~~------~~~~~d~lViATGs~p~~-~i~G---~~v~---~  230 (535)
                         .+........+..+++++.+ ++..+  +.+.+.+.+      .++.||+||||||++|.. ++||   +.++   +
T Consensus        67 ---~~~~~~~~~~~~~gi~~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~~~~v~~~~~  143 (472)
T 3iwa_A           67 ---NVVRDPEFFRINKDVEALVETRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGSKANRPPVEGMDLAGVTPVTN  143 (472)
T ss_dssp             -----------------CEEECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCSCTTTTSBTEEECCS
T ss_pred             ---hhccCHHHHhhhcCcEEEECCEEEEEECCCCEEEEeecCCCCEEEEECCEEEEeCCCCcCCCCCCCCCCCCEEEeCC
Confidence               00111112223468888654 44443  356676642      379999999999999998 8988   2333   3


Q ss_pred             hhhHHhcc-----CCCCcEEEECCChHHHHHHHHHHhC-CCcEEEEEc-CcCCc-cCcHHHHHHHHHhhhcCCeEE-cce
Q psy14461        231 ADDLFRLG-----AWPGKTLVLGGSLMAVEIAATLNFL-GVPVTLVYS-RRLLK-HFDQEMVRILLSSLTKAGVSI-QCC  301 (535)
Q Consensus       231 ~~~~~~~~-----~~~k~vvViGgG~~g~e~A~~l~~~-g~~Vtlv~~-~~~l~-~~~~~~~~~~~~~l~~~gV~i-~~~  301 (535)
                      .++...+.     ..+++++|||+|++|+|+|..|++. |.+|+++++ +.+++ .+++++.+.+.+.+++.||++ +++
T Consensus       144 ~~~~~~l~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~  223 (472)
T 3iwa_A          144 LDEAEFVQHAISAGEVSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGE  223 (472)
T ss_dssp             HHHHHHHHHHCCTTSCSEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSSSTTTSCHHHHHHHHHHHHHTTCEEECSC
T ss_pred             HHHHHHHHHHhhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCcccccccCHHHHHHHHHHHHhcCCEEEeCC
Confidence            44554443     4589999999999999999999999 999999999 99998 899999999999999999999 999


Q ss_pred             EEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCc
Q psy14461        302 VIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGI  381 (535)
Q Consensus       302 ~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~  381 (535)
                      +|++++.+ ++.+.+++.   +|+  ++++|.|++|+|++|+++++  +.+|++++++|+|.||++++|+.|+|||+|||
T Consensus       224 ~v~~i~~~-~~~v~v~~~---~g~--~i~aD~Vv~a~G~~p~~~l~--~~~gl~~~~~g~i~vd~~~~t~~~~Iya~GD~  295 (472)
T 3iwa_A          224 KVVRLEGE-NGKVARVIT---DKR--TLDADLVILAAGVSPNTQLA--RDAGLELDPRGAIIVDTRMRTSDPDIFAGGDC  295 (472)
T ss_dssp             CEEEEEES-SSBEEEEEE---SSC--EEECSEEEECSCEEECCHHH--HHHTCCBCTTCCEECCTTCBCSSTTEEECGGG
T ss_pred             EEEEEEcc-CCeEEEEEe---CCC--EEEcCEEEECCCCCcCHHHH--HhCCccCCCCCCEEECCCcccCCCCEEEeccc
Confidence            99999875 466777774   676  89999999999999999865  67889999999999999999999999999999


Q ss_pred             CC------CC---CCcHHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEec
Q psy14461        382 VH------GK---PNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSY  452 (535)
Q Consensus       382 ~~------~~---~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~  452 (535)
                      +.      +.   +.+++.|.+||++||+||+|...........+++.|++|++++||+||+||++.+.  ++.+...  
T Consensus       296 ~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~a~vG~~e~~a~~~g~--~~~~~~~--  371 (472)
T 3iwa_A          296 VTIPNLVTGKPGFFPLGSMANRQGRVIGTNLADGDATFPGAVGSWAVKLFEGSASGAGLTVEGALREGY--DAVNVHV--  371 (472)
T ss_dssp             EEEEBTTTSSEECCCCTTHHHHHHHHHHHHHTTCCCCCCCBCCCEEEECSSCEEEEEECCHHHHHHTTC--CEEEEEE--
T ss_pred             eecccccCCceeecchHHHHHHHHHHHHHHhcCCCccCCCCCcceEEEECCceeEEEECCHHHHHHcCC--ceEEEEE--
Confidence            83      21   35788999999999999999765433333445677999999999999999998833  5555433  


Q ss_pred             CCcccccCCCCCcchhhhhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcC---chhHHHHHHHHHHHCCCCH
Q psy14461        453 PTFDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQ---NVAGMIFGYSLALRKFLTK  529 (535)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~---~a~e~i~~~~~~i~~~~t~  529 (535)
                      ....++. ..                     .+++.||+||++|++|++|||+|++|+   +|.|+|+.+++||++++|+
T Consensus       372 ~~~~~~~-~~---------------------~~~~~~~~kli~~~~~~~ilG~~~~g~~~~~~~~~i~~~~~ai~~~~t~  429 (472)
T 3iwa_A          372 EQFDRAH-FY---------------------PEKTIMTLQLVVDRPTRRVLGIQGFSTLGDALTARINAVATMLASKPTV  429 (472)
T ss_dssp             EC---------------------------------CEEEEEEEETTTCBEEEEEEEESCHHHHHHHHHHHHHHHTTCCBH
T ss_pred             ecCCccC-cc---------------------CCCceEEEEEEEECCCCEEEEEEEECCCcccHHHHHHHHHHHHHcCCCH
Confidence            3323322 00                     025789999999999999999999999   4699999999999999999


Q ss_pred             HHHcCC
Q psy14461        530 AELDGT  535 (535)
Q Consensus       530 ~~l~~~  535 (535)
                      +||.++
T Consensus       430 ~~l~~~  435 (472)
T 3iwa_A          430 EDISNA  435 (472)
T ss_dssp             HHHHTC
T ss_pred             HHHhcc
Confidence            999864

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=100.00  E-value=7.5e-53  Score=459.73  Aligned_cols=388  Identities=16%  Similarity=0.126  Sum_probs=304.5

Q ss_pred             EEEEeeCCccHHHHHHHHHhhC--CCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTN--QRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKR  166 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~--~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  166 (535)
                      .+|+|||+|++|+++|..+...  +.+|+|||+++.++|.++++|++   +++....  .    ......+         
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~~~~~~l~~~---~~~~~~~--~----~~~~~~~---------   63 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVSFANCGLPYH---ISGEIAQ--R----SALVLQT---------   63 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGGHHHH---HTSSSCC--G----GGGBCCC---------
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCccccccCchHH---hcCCcCC--h----HHhhccC---------
Confidence            3689999999999999766554  78999999999998888888765   3321000  0    0000111         


Q ss_pred             HHHHHHHHHHHHHHhcCcEEEEe-EEEEe--cCCEEEEce------eEEEcceEEEeeCceecC-CCCC---Cceechhh
Q psy14461        167 FCIRAKNDSMRELKALGIDIVRT-AAAFT--NPHTIKLSN------RSVTGFNFLLAVERRCLP-EPRN---SALISADD  233 (535)
Q Consensus       167 ~~~~~~~~~~~~~~~~gV~~~~g-~~~~~--~~~~v~~~~------~~~~~d~lViATGs~p~~-~i~G---~~v~~~~~  233 (535)
                              .....+..+++++.+ ++..+  +.+.+.+.+      .++.||+||||||++|+. ++||   ..+++..+
T Consensus        64 --------~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~ipG~~~~~v~~~~~  135 (565)
T 3ntd_A           64 --------PESFKARFNVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGAAPIVPPIPGVDNPLTHSLRN  135 (565)
T ss_dssp             --------HHHHHHHHCCEEETTEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCTTCCSTTEECCSS
T ss_pred             --------HHHHHHhcCcEEEECCEEEEEECCCCEEEEEecCCCCeEEEECCEEEECCCCCCCCCCCCCCCCCCEEEeCC
Confidence                    112233468888643 44443  356677642      379999999999999999 8998   34555433


Q ss_pred             HH---hc-----cCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEE
Q psy14461        234 LF---RL-----GAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVI  303 (535)
Q Consensus       234 ~~---~~-----~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v  303 (535)
                      +.   .+     ...+++|+|||+|++|+|+|..|++.|.+||++++ +.+++.+++++.+.+.+.+++.||++ +++.+
T Consensus       136 ~~~~~~l~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~v  215 (565)
T 3ntd_A          136 IPDMDRILQTIQMNNVEHATVVGGGFIGLEMMESLHHLGIKTTLLELADQVMTPVDREMAGFAHQAIRDQGVDLRLGTAL  215 (565)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSCTTSCHHHHHHHHHHHHHTTCEEEETCCE
T ss_pred             HHHHHHHHHHHhhCCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCccchhcCHHHHHHHHHHHHHCCCEEEeCCeE
Confidence            22   22     24578999999999999999999999999999999 99999999999999999999999999 99999


Q ss_pred             EEEEEe------------------CCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcC
Q psy14461        304 EKVISS------------------FDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCN  365 (535)
Q Consensus       304 ~~i~~~------------------~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd  365 (535)
                      ++++..                  .++.+.+.+   .+|+  ++++|.|++|+|++|+++++  +.+|++++++|+|.||
T Consensus       216 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~g~--~i~~D~vi~a~G~~p~~~l~--~~~g~~~~~~g~i~vd  288 (565)
T 3ntd_A          216 SEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTL---SNGE--LLETDLLIMAIGVRPETQLA--RDAGLAIGELGGIKVN  288 (565)
T ss_dssp             EEEEEECCCCCCCGGGTCCCTTCCTTCEEEEEE---TTSC--EEEESEEEECSCEEECCHHH--HHHTCCBCTTSSBCCC
T ss_pred             EEEeccccccccccccccccccccCCCcEEEEE---cCCC--EEEcCEEEECcCCccchHHH--HhCCcccCCCCCEEEC
Confidence            999873                  245566666   3676  89999999999999999865  7778999999999999


Q ss_pred             CCCCcCCCCEEEeCCcCC------CC---CCcHHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCHHHH
Q psy14461        366 EKDQTSVGNIFAVGGIVH------GK---PNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAA  436 (535)
Q Consensus       366 ~~~~T~~~~IyA~GD~~~------~~---~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a  436 (535)
                      ++++|+.|+|||+|||+.      +.   +.+++.|.+||++||+||+|...........+++.|++|++++||+||+||
T Consensus       289 ~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a  368 (565)
T 3ntd_A          289 AMMQTSDPAIYAVGDAVEEQDFVTGQACLVPLAGPANRQGRMAADNMFGREERYQGTQGTAICKVFDLAVGATGKNEKQL  368 (565)
T ss_dssp             TTCBCSSTTEEECGGGBCEEBTTTCCEECCCCHHHHHHHHHHHHHHHTTCCCCCCCBCCCEEEEETTEEEEEEECCHHHH
T ss_pred             CCcccCCCCEEEeeeeEeeccccCCceeecccHHHHHHHHHHHHHHhcCCCccCCCcccceEEEEcCcEEEEecCCHHHH
Confidence            999999999999999973      22   357899999999999999997654333444557889999999999999999


Q ss_pred             HHhcCCCCEEEEEEecCCcccccCCCCCcchhhhhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCch-hHH
Q psy14461        437 AKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNV-AGM  515 (535)
Q Consensus       437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a-~e~  515 (535)
                      ++.+.  ++.+..  +....++.+ .                     .+.+.||+||++|+++++|||+|++|++| .|+
T Consensus       369 ~~~g~--~~~~~~--~~~~~~~~~-~---------------------~~~~~~~~k~v~~~~~~~ilG~~~~g~~a~~e~  422 (565)
T 3ntd_A          369 KQAGI--AFEKVY--VHTASHASY-Y---------------------PGAEVVSFKLLFDPVKGTIFGAQAVGKDGIDKR  422 (565)
T ss_dssp             HHTTC--CCEEEE--EEEESSCTT-S---------------------TTCCEEEEEEEECTTTCBEEEEEEEESSSHHHH
T ss_pred             HHcCC--CeEEEE--EecCcccCc-C---------------------CCCceEEEEEEEECCCCEEEEEEEECCccHHHH
Confidence            98733  444433  322223220 0                     01468999999999999999999999998 999


Q ss_pred             HHHHHHHHHCCCCHHHHcCC
Q psy14461        516 IFGYSLALRKFLTKAELDGT  535 (535)
Q Consensus       516 i~~~~~~i~~~~t~~~l~~~  535 (535)
                      |+.+++||++++|++||.++
T Consensus       423 i~~~~~ai~~~~~~~~l~~~  442 (565)
T 3ntd_A          423 IDVMAVAQRAGMTVEQLQHL  442 (565)
T ss_dssp             HHHHHHHHHTTCBHHHHTTC
T ss_pred             HHHHHHHHHcCCCHHHHhhh
Confidence            99999999999999999874

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=100.00  E-value=9.9e-53  Score=446.39  Aligned_cols=384  Identities=15%  Similarity=0.067  Sum_probs=304.9

Q ss_pred             EEEeeCCccHHHHHHHHHhhC--CCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHH
Q psy14461         90 YLDRIGDEGILLEEELKRQTN--QRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRF  167 (535)
Q Consensus        90 ~v~iiG~G~aG~~~al~~~~~--~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  167 (535)
                      +++|||+|++|+.+|..+...  +.+|+|||+++.++|.+++++.+   +.+...           ..++.++.      
T Consensus         2 dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~---~~g~~~-----------~~~~~~~~------   61 (452)
T 2cdu_A            2 KVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISFLSCGIALY---LGKEIK-----------NNDPRGLF------   61 (452)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCCBCGGGHHHH---HTTCBG-----------GGCGGGGB------
T ss_pred             eEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCcccccchhh---hcCCcc-----------cCCHHHhh------
Confidence            689999999999999877665  89999999999888877776654   222100           01121111      


Q ss_pred             HHHHHHHHHHHHHhcCcEEEEeE-EEEe--cCCEEEEc------eeEEEcceEEEeeCceecC-CCCC---Cceech---
Q psy14461        168 CIRAKNDSMRELKALGIDIVRTA-AAFT--NPHTIKLS------NRSVTGFNFLLAVERRCLP-EPRN---SALISA---  231 (535)
Q Consensus       168 ~~~~~~~~~~~~~~~gV~~~~g~-~~~~--~~~~v~~~------~~~~~~d~lViATGs~p~~-~i~G---~~v~~~---  231 (535)
                           ......++..||+++.+. +..+  +.+++.+.      +.++.||+||||||++|.. ++||   +++++.   
T Consensus        62 -----~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtGs~p~~p~i~g~~~~~v~~~~~~  136 (452)
T 2cdu_A           62 -----YSSPEELSNLGANVQMRHQVTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGSKPTVPPIPGIDSSRVYLCKNY  136 (452)
T ss_dssp             -----SCCHHHHHHTTCEEEESEEEEEEEGGGTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCTTTTSTTEEECSSH
T ss_pred             -----hcCHHHHHHcCCEEEeCCEEEEEEcCCCEEEEEecCCCceEEEECCEEEEccCCCcCCCCCCCCCCCCEEEeCcH
Confidence                 111244566799997775 5544  36778774      3579999999999999998 8998   345543   


Q ss_pred             ---hhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCc-cCcHHHHHHHHHhhhcCCeEE-cceEEEE
Q psy14461        232 ---DDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLK-HFDQEMVRILLSSLTKAGVSI-QCCVIEK  305 (535)
Q Consensus       232 ---~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~-~~~~~~~~~~~~~l~~~gV~i-~~~~v~~  305 (535)
                         .+++.....+++++|||+|++|+|+|..|+++|.+||++++ +++++ .+++++.+.+.+.+++.||++ ++++|++
T Consensus       137 ~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~  216 (452)
T 2cdu_A          137 NDAKKLFEEAPKAKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLYKYFDKEFTDILAKDYEAHGVNLVLGSKVAA  216 (452)
T ss_dssp             HHHHHHHHHGGGCSEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHHTTCEEEESSCEEE
T ss_pred             HHHHHHHHHhccCCeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCchhhhhhhhhHHHHHHHHHHHCCCEEEcCCeeEE
Confidence               34444455689999999999999999999999999999999 89888 799999999999999999999 9999999


Q ss_pred             EEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCC
Q psy14461        306 VISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGK  385 (535)
Q Consensus       306 i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~  385 (535)
                      ++.. ++++....   .+|+  ++++|.|++|+|++||++++  +.. ++++++|+|.||+++||+.|+|||+|||+ +.
T Consensus       217 i~~~-~~~v~~v~---~~g~--~i~~D~vv~a~G~~p~~~ll--~~~-l~~~~~G~i~Vd~~~~t~~~~IyA~GD~~-~~  286 (452)
T 2cdu_A          217 FEEV-DDEIITKT---LDGK--EIKSDIAILCIGFRPNTELL--KGK-VAMLDNGAIITDEYMHSSNRDIFAAGDSA-AV  286 (452)
T ss_dssp             EEEE-TTEEEEEE---TTSC--EEEESEEEECCCEEECCGGG--TTT-SCBCTTSCBCCCTTSBCSSTTEEECSTTB-CE
T ss_pred             EEcC-CCeEEEEE---eCCC--EEECCEEEECcCCCCCHHHH--HHh-hhcCCCCCEEECCCcCcCCCCEEEcceEE-Ee
Confidence            9864 35443222   2666  79999999999999999875  666 88888999999999999999999999999 42


Q ss_pred             ----------CCcHHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCc
Q psy14461        386 ----------PNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTF  455 (535)
Q Consensus       386 ----------~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~  455 (535)
                                +++++.|.+||++||+||++.......+...|++.|++|+++++|+++++|++.+.  ++.+.  .+...
T Consensus       287 ~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~a~~~g~--~~~~~--~~~~~  362 (452)
T 2cdu_A          287 HYNPTNSNAYIPLATNAVRQGRLVGLNLTEDKVKDMGTQSSSGLKLYGRTYVSTGINTALAKANNL--KVSEV--IIADN  362 (452)
T ss_dssp             EETTTTEEECCCCHHHHHHHHHHHHHTSSSCCCCCCCBCCCEEEEETTEEEEEEECCHHHHHHTTC--CCEEE--EEEEE
T ss_pred             ccccCCCeeecchHHHHHHHHHHHHHHhCCCCCcCCCccceEEEEECCeeeEeecCCHHHHHHcCC--ceEEE--EEecC
Confidence                      46899999999999999998654444555678899999999999999999998732  45443  23332


Q ss_pred             ccccCCCCCcchhhhhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcC-chhHHHHHHHHHHHCCCCHHHHcC
Q psy14461        456 DNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQ-NVAGMIFGYSLALRKFLTKAELDG  534 (535)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~-~a~e~i~~~~~~i~~~~t~~~l~~  534 (535)
                      .+..+..                      +.+.+|+|+++++++++|||+|++|+ ++.|+|+.++++|++++|++||.+
T Consensus       363 ~~~~~~~----------------------~~~~~~~k~~~~~~~~~ilG~~~~g~~~~~~~i~~~~~ai~~~~~~~~l~~  420 (452)
T 2cdu_A          363 YRPEFML----------------------STDEVLMSLVYDPKTRVILGGALSSMHDVSQSANVLSVCIQNKNTIDDLAM  420 (452)
T ss_dssp             SSCTTBS----------------------CCCEEEEEEEECTTTCBEEEEEEEESSCCHHHHHHHHHHHHTTCBHHHHHH
T ss_pred             CccccCC----------------------CCceEEEEEEEECCCCEEEEEEEEcCccHHHHHHHHHHHHHcCCCHHHHhh
Confidence            2221000                      13579999999999999999999999 899999999999999999999874

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=100.00  E-value=6.8e-52  Score=439.34  Aligned_cols=381  Identities=17%  Similarity=0.154  Sum_probs=301.2

Q ss_pred             EEEeeCCccHHHHHHHHHhhC--CCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHH
Q psy14461         90 YLDRIGDEGILLEEELKRQTN--QRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRF  167 (535)
Q Consensus        90 ~v~iiG~G~aG~~~al~~~~~--~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  167 (535)
                      +++|||+|++|+.+|..+...  +.+|+|||+++.++|.+++++.+   +.+..             .++.++.      
T Consensus         2 dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~---~~~~~-------------~~~~~~~------   59 (447)
T 1nhp_A            2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLY---LEGKV-------------KDVNSVR------   59 (447)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCGGGHHHH---HTTSS-------------CCGGGSB------
T ss_pred             eEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccCcccccchhh---hcCcc-------------CCHHHhh------
Confidence            689999999999999877655  89999999999888877776654   22210             0111111      


Q ss_pred             HHHHHHHHHHHHHhcCcEEEEeEEE-Ee--cCCEEEEce------eEEEcceEEEeeCceecC-CCCC---Cceech---
Q psy14461        168 CIRAKNDSMRELKALGIDIVRTAAA-FT--NPHTIKLSN------RSVTGFNFLLAVERRCLP-EPRN---SALISA---  231 (535)
Q Consensus       168 ~~~~~~~~~~~~~~~gV~~~~g~~~-~~--~~~~v~~~~------~~~~~d~lViATGs~p~~-~i~G---~~v~~~---  231 (535)
                           ......+++.||+++.+... .+  +.++|.+.+      .++.||+||||||++|.. ++||   +++++.   
T Consensus        60 -----~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~~~~v~~~~~~  134 (447)
T 1nhp_A           60 -----YMTGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDIPGKDLDNIYLMRGR  134 (447)
T ss_dssp             -----SCCHHHHHHTTCEEEETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCSTTTTSBSEECCCHH
T ss_pred             -----cCCHHHHHHCCCEEEECCEEEEEeCCCCEEEEEecCCCceEEEeCCEEEEcCCCCcCCCCCCCCCCCCeEEECCH
Confidence                 11124456679999776543 33  567787742      258999999999999998 8998   346654   


Q ss_pred             hhHHhcc---C--CCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCc-cCcHHHHHHHHHhhhcCCeEE-cceEE
Q psy14461        232 DDLFRLG---A--WPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLK-HFDQEMVRILLSSLTKAGVSI-QCCVI  303 (535)
Q Consensus       232 ~~~~~~~---~--~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~-~~~~~~~~~~~~~l~~~gV~i-~~~~v  303 (535)
                      +++..+.   .  .+++++|||+|++|+|+|..|+++|.+|+++++ +.+++ .+++++.+.+.+.+++.||++ +++.+
T Consensus       135 ~~~~~l~~~~~~~~~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gv~i~~~~~v  214 (447)
T 1nhp_A          135 QWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETV  214 (447)
T ss_dssp             HHHHHHHHHHTCTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHHHHHHHHHHHTTTEEEEESCCE
T ss_pred             HHHHHHHHHhhhcCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCcccccccCCHHHHHHHHHHHHhCCCEEEcCCEE
Confidence            4443332   2  689999999999999999999999999999999 88888 689999999999999999999 99999


Q ss_pred             EEEEEeCCCcE-EEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcC
Q psy14461        304 EKVISSFDGMK-GVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIV  382 (535)
Q Consensus       304 ~~i~~~~~~~~-~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~  382 (535)
                      ++++.+  +.+ .+.+    +|+  ++++|.|++|+|++|+++++  +.. ++++++|+|.||+++||+.|+|||+|||+
T Consensus       215 ~~i~~~--~~v~~v~~----~~~--~i~~d~vi~a~G~~p~~~~~--~~~-~~~~~~G~i~Vd~~~~t~~~~Iya~GD~~  283 (447)
T 1nhp_A          215 ERYEGD--GRVQKVVT----DKN--AYDADLVVVAVGVRPNTAWL--KGT-LELHPNGLIKTDEYMRTSEPDVFAVGDAT  283 (447)
T ss_dssp             EEEECS--SBCCEEEE----SSC--EEECSEEEECSCEEESCGGG--TTT-SCBCTTSCBCCCTTCBCSSTTEEECGGGS
T ss_pred             EEEEcc--CcEEEEEE----CCC--EEECCEEEECcCCCCChHHH--Hhh-hhhcCCCcEEECccccCCCCCEEEeeeEE
Confidence            999864  333 4554    455  79999999999999999876  565 77888899999999999999999999999


Q ss_pred             C------C---CCCcHHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecC
Q psy14461        383 H------G---KPNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYP  453 (535)
Q Consensus       383 ~------~---~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~  453 (535)
                      .      +   .+++++.|.+||++||+||++......++..+|++.|++|+++++|+++++|++.+.  ++.+.  .+.
T Consensus       284 ~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~a~~~g~--~~~~~--~~~  359 (447)
T 1nhp_A          284 LIKYNPADTEVNIALATNARKQGRFAVKNLEEPVKPFPGVQGSSGLAVFDYKFASTGINEVMAQKLGK--ETKAV--TVV  359 (447)
T ss_dssp             CEEEGGGTEEECCCCHHHHHHHHHHHHHTSSSCCCCCCCBCCCEEEEETTEEEEEEECCHHHHHHHTC--CCEEE--EEE
T ss_pred             EeeccCCCCceechhHHHHHHHHHHHHHhhcCCCCCCCCccccEEEEECCeeeEEecCCHHHHHHcCC--ceEEE--EEE
Confidence            3      0   246899999999999999998654444556789999999999999999999998733  44443  232


Q ss_pred             CcccccCCCCCcchhhhhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCc-hhHHHHHHHHHHHCCCCHHHH
Q psy14461        454 TFDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQN-VAGMIFGYSLALRKFLTKAEL  532 (535)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~-a~e~i~~~~~~i~~~~t~~~l  532 (535)
                      ...+.. ...                     +++.+|+|+++++++++|||+|++|++ |.|+|+.++++|++++|++||
T Consensus       360 ~~~~~~-~~~---------------------~~~~~~~k~~~~~~~~~ilG~~~~g~~~a~e~i~~~~~ai~~~~~~~~l  417 (447)
T 1nhp_A          360 EDYLMD-FNP---------------------DKQKAWFKLVYDPETTQILGAQLMSKADLTANINAISLAIQAKMTIEDL  417 (447)
T ss_dssp             EESSCT-TCT---------------------TCCEEEEEEEECTTTCBEEEEEEEESSCCTTHHHHHHHHHHTTCBHHHH
T ss_pred             cCCccc-cCC---------------------CCceEEEEEEEECCCCEEEEEEEEcCccHHHHHHHHHHHHHcCCCHHHH
Confidence            222221 000                     146799999999989999999999998 999999999999999999999


Q ss_pred             cC
Q psy14461        533 DG  534 (535)
Q Consensus       533 ~~  534 (535)
                      .+
T Consensus       418 ~~  419 (447)
T 1nhp_A          418 AY  419 (447)
T ss_dssp             HT
T ss_pred             hh
Confidence            86

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=100.00  E-value=8.8e-52  Score=442.19  Aligned_cols=383  Identities=16%  Similarity=0.158  Sum_probs=305.2

Q ss_pred             EEEEeeCCccHHHHHHHHHhhC--CCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTN--QRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKR  166 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~--~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  166 (535)
                      ++|+|||+|++|+.+|..+...  +.+|+|||+++..+|.+++++.+   +.+.             ..++.++..+.  
T Consensus        37 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~---~~~~-------------~~~~~~l~~~~--   98 (480)
T 3cgb_A           37 MNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYAQCGLPYV---ISGA-------------IASTEKLIARN--   98 (480)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCSBCGGGHHHH---HTTS-------------SSCGGGGBSSC--
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCCCCCCcchh---hcCC-------------cCCHHHhhhcC--
Confidence            5789999999999999877653  78999999999888877776654   2221             11222221111  


Q ss_pred             HHHHHHHHHHHHH-HhcCcEEEEe-EEEEe--cCCEEEEce----e--EEEcceEEEeeCceecC-CCCC---Ccee---
Q psy14461        167 FCIRAKNDSMREL-KALGIDIVRT-AAAFT--NPHTIKLSN----R--SVTGFNFLLAVERRCLP-EPRN---SALI---  229 (535)
Q Consensus       167 ~~~~~~~~~~~~~-~~~gV~~~~g-~~~~~--~~~~v~~~~----~--~~~~d~lViATGs~p~~-~i~G---~~v~---  229 (535)
                               .+.+ +..||+++.+ .+..+  +.+++.+.+    .  ++.||+||||||++|+. ++||   ++++   
T Consensus        99 ---------~~~~~~~~gv~~~~~~~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~~~~v~~~~  169 (480)
T 3cgb_A           99 ---------VKTFRDKYGIDAKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGVRPVMPEWEGRDLQGVHLLK  169 (480)
T ss_dssp             ---------HHHHHHTTCCEEESSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCBTTTSBTEECCS
T ss_pred             ---------HHHHHhhcCCEEEeCCEEEEEECCCCEEEEEEcCCCceEEEEcCEEEECCCCcccCCCCCCccCCCEEEeC
Confidence                     1223 4459999875 44444  356777752    2  79999999999999998 8988   3444   


Q ss_pred             chhhHHhccC-----CCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceE
Q psy14461        230 SADDLFRLGA-----WPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCV  302 (535)
Q Consensus       230 ~~~~~~~~~~-----~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~  302 (535)
                      +.++++.+.+     .+++|+|||+|++|+|+|..|++.|.+|+++++ +.+++.+++++.+.+.+.+++.||++ +++.
T Consensus       170 ~~~~~~~l~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~  249 (480)
T 3cgb_A          170 TIPDAERILKTLETNKVEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIGTIYDGDMAEYIYKEADKHHIEILTNEN  249 (480)
T ss_dssp             SHHHHHHHHHHHHSSCCCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGGTTSSSCHHHHHHHHHHHHHTTCEEECSCC
T ss_pred             CHHHHHHHHHHhhhcCCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCchhhcCCHHHHHHHHHHHHHcCcEEEcCCE
Confidence            4566665543     689999999999999999999999999999999 89999999999999999999999999 9999


Q ss_pred             EEEEEEeCCCcE-EEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCc
Q psy14461        303 IEKVISSFDGMK-GVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGI  381 (535)
Q Consensus       303 v~~i~~~~~~~~-~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~  381 (535)
                      +++++.+  +.+ .+.+    ++.  ++++|.|++|+|++|+++++  +.+|++++++|+|.||+++||+.|+|||+|||
T Consensus       250 v~~i~~~--~~v~~v~~----~~~--~i~~D~vi~a~G~~p~~~~l--~~~g~~~~~~G~I~Vd~~~~ts~p~IyA~GD~  319 (480)
T 3cgb_A          250 VKAFKGN--ERVEAVET----DKG--TYKADLVLVSVGVKPNTDFL--EGTNIRTNHKGAIEVNAYMQTNVQDVYAAGDC  319 (480)
T ss_dssp             EEEEEES--SBEEEEEE----TTE--EEECSEEEECSCEEESCGGG--TTSCCCBCTTSCBCCCTTSBCSSTTEEECGGG
T ss_pred             EEEEEcC--CcEEEEEE----CCC--EEEcCEEEECcCCCcChHHH--HhCCcccCCCCCEEECCCccCCCCCEEEeeeE
Confidence            9999864  333 3444    344  79999999999999999876  77889998899999999999999999999999


Q ss_pred             CC------CC---CCcHHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEec
Q psy14461        382 VH------GK---PNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSY  452 (535)
Q Consensus       382 ~~------~~---~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~  452 (535)
                      +.      +.   +++++.|.+||++||+||++......++..+|++.|++|+++++|+++++|++.+.  ++.+.....
T Consensus       320 ~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~a~~~g~--~~~~~~~~~  397 (480)
T 3cgb_A          320 ATHYHVIKEIHDHIPIGTTANKQGRLAGLNMLDKRRAFKGTLGTGIIKFMNLTLARTGLNEKEAKGLHI--PYKTVKVDS  397 (480)
T ss_dssp             BCEEBTTTCSEECCCCHHHHHHHHHHHHHHHTTCCCCCCCBCCCEEEEETTEEEEEEECCHHHHHHTTC--CEEEEEEEE
T ss_pred             EEecCCCCCcceecchHHHHHHHHHHHHHHhcCCCccCCCccceeEEEECCcEEEEeCCCHHHHHHcCC--ceEEEEEec
Confidence            84      11   25789999999999999998654444566789999999999999999999998743  565544333


Q ss_pred             CCcccccCCCCCcchhhhhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCc-hhHHHHHHHHHHHCCCCHHH
Q psy14461        453 PTFDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQN-VAGMIFGYSLALRKFLTKAE  531 (535)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~-a~e~i~~~~~~i~~~~t~~~  531 (535)
                      ....... +                       +.+.+|+|+++|+++++|||+|++|++ |.|+|+.++++|++++|++|
T Consensus       398 ~~~~~~~-~-----------------------~~~~~~~kl~~~~~~~~ilG~~~vg~~~a~e~i~~~~~ai~~~~~~~~  453 (480)
T 3cgb_A          398 TNMAGYY-P-----------------------NAKPLYLKLLYRSDTKQLLGGQVIGEEGVDKRIDVIAMALFNKMSIHD  453 (480)
T ss_dssp             ESSCTTS-T-----------------------TCCEEEEEEEEETTTCBEEEEEEEESSSHHHHHHHHHHHHHTTCBGGG
T ss_pred             CCccccc-C-----------------------CCceEEEEEEEECCCCEEEEEEEECCccHHHHHHHHHHHHHcCCCHHH
Confidence            2111111 1                       146799999999999999999999998 99999999999999999999


Q ss_pred             HcC
Q psy14461        532 LDG  534 (535)
Q Consensus       532 l~~  534 (535)
                      |.+
T Consensus       454 l~~  456 (480)
T 3cgb_A          454 LED  456 (480)
T ss_dssp             GGG
T ss_pred             Hhh
Confidence            976

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=100.00  E-value=5e-52  Score=455.16  Aligned_cols=385  Identities=17%  Similarity=0.152  Sum_probs=303.0

Q ss_pred             EEEEeeCCccHHHHHHHHHhhC--CCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTN--QRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKR  166 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~--~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  166 (535)
                      .+|+|||+|++|+++|..+...  +.+|+|||+++.++|.++++|++   +++...             ....+      
T Consensus        37 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~~~~~~lp~~---~~g~~~-------------~~~~~------   94 (588)
T 3ics_A           37 RKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYISFANCGLPYY---IGGVIT-------------ERQKL------   94 (588)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGGHHHH---HTTSSC-------------CGGGG------
T ss_pred             CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCccccCCCCchh---hcCcCC-------------ChHHh------
Confidence            5789999999999999876655  89999999999999988888876   333210             00000      


Q ss_pred             HHHHHHHHHHHHHHhcCcEEEEeE-EEEe--cCCEEEEc----e--eEEEcceEEEeeCceecC-CCCC----Cceechh
Q psy14461        167 FCIRAKNDSMRELKALGIDIVRTA-AAFT--NPHTIKLS----N--RSVTGFNFLLAVERRCLP-EPRN----SALISAD  232 (535)
Q Consensus       167 ~~~~~~~~~~~~~~~~gV~~~~g~-~~~~--~~~~v~~~----~--~~~~~d~lViATGs~p~~-~i~G----~~v~~~~  232 (535)
                          +........+..++++..+. +..+  +.+++.+.    +  .++.||+||||||++|.. ++||    ..+++..
T Consensus        95 ----~~~~~~~~~~~~gi~v~~~~~V~~id~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~~~~~v~~~~  170 (588)
T 3ics_A           95 ----LVQTVERMSKRFNLDIRVLSEVVKINKEEKTITIKNVTTNETYNEAYDVLILSPGAKPIVPSIPGIEEAKALFTLR  170 (588)
T ss_dssp             ----BSSCHHHHHHHTTCEEECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCTTTTTCTTEEECS
T ss_pred             ----hccCHHHHHHhcCcEEEECCEEEEEECCCCEEEEeecCCCCEEEEeCCEEEECCCCCCCCCCCCCcccCCCeEEeC
Confidence                00111234456789986543 4333  45677764    2  378999999999999998 8888    3455554


Q ss_pred             hHHhc--------cCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceE
Q psy14461        233 DLFRL--------GAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCV  302 (535)
Q Consensus       233 ~~~~~--------~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~  302 (535)
                      ++...        ...+++++|||+|++|+|+|..|++.|.+|+++++ +.+++.+++++.+.+.+.+++.||++ +++.
T Consensus       171 ~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~  250 (588)
T 3ics_A          171 NVPDTDRIKAYIDEKKPRHATVIGGGFIGVEMVENLRERGIEVTLVEMANQVMPPIDYEMAAYVHEHMKNHDVELVFEDG  250 (588)
T ss_dssp             SHHHHHHHHHHHHHHCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEECSCC
T ss_pred             CHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCcccccCCHHHHHHHHHHHHHcCCEEEECCe
Confidence            43322        24689999999999999999999999999999999 99999999999999999999999999 9999


Q ss_pred             EEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcC
Q psy14461        303 IEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIV  382 (535)
Q Consensus       303 v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~  382 (535)
                      |++++.+ ++  .|++.   +|+  ++++|.|++|+|++|+++++  +.+|++++++|+|.||++++|+.|+|||+|||+
T Consensus       251 v~~i~~~-~~--~v~~~---~g~--~i~~D~Vi~a~G~~p~~~~l--~~~g~~~~~~g~i~vd~~~~t~~~~IyA~GD~~  320 (588)
T 3ics_A          251 VDALEEN-GA--VVRLK---SGS--VIQTDMLILAIGVQPESSLA--KGAGLALGVRGTIKVNEKFQTSDPHIYAIGDAI  320 (588)
T ss_dssp             EEEEEGG-GT--EEEET---TSC--EEECSEEEECSCEEECCHHH--HHTTCCBCGGGCBCCCTTSBCSSTTEEECGGGB
T ss_pred             EEEEecC-CC--EEEEC---CCC--EEEcCEEEEccCCCCChHHH--HhcCceEcCCCCEEECCccccCCCCEEEeeeee
Confidence            9999864 23  46663   676  89999999999999999875  788999999999999999999999999999998


Q ss_pred             C------C---CCCcHHHHHHHHHHHHHHHhC-CCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEec
Q psy14461        383 H------G---KPNNASMAAISARLIIERLYG-MQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSY  452 (535)
Q Consensus       383 ~------~---~~~~~~~A~~~g~~aa~~i~g-~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~  452 (535)
                      .      +   .+++++.|.+||++||+||+| ...........++..|++|++++||+||+||++++.  ++.+.....
T Consensus       321 ~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~a~vGlte~~a~~~g~--~~~~~~~~~  398 (588)
T 3ics_A          321 EVKDFVTETETMIPLAWPANRQGRMLADIIHGHTDSLYKGTLGTSVAKVFDLTVATTGLNEKILKRLNI--PYEVVHVQA  398 (588)
T ss_dssp             CEEBTTTCCEECCCCHHHHHHHHHHHHHHHTTCCSSCCCCBCCCEEEEETTEEEEEEECCHHHHHHTTC--CCEEEEEEE
T ss_pred             ecccccCCcccccccHHHHHHHHHHHHHHhcCCCccccCCcccceEEEECCeEEEEecCCHHHHHHcCC--CeEEEEEec
Confidence            3      2   246889999999999999998 543322222334556899999999999999998843  555544332


Q ss_pred             CCcccccCCCCCcchhhhhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCc-hhHHHHHHHHHHHCCCCHHH
Q psy14461        453 PTFDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQN-VAGMIFGYSLALRKFLTKAE  531 (535)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~-a~e~i~~~~~~i~~~~t~~~  531 (535)
                        ..+..                      ...+++.||+||++|++|++|||+|++|++ |.|+|+.+++||++++|++|
T Consensus       399 --~~~~~----------------------~~~~~~~~~~k~i~~~~~~~ilG~~~~g~~~~~e~i~~~~~ai~~~~t~~~  454 (588)
T 3ics_A          399 --NSHAG----------------------YYPNATPVLIKLIFNKDSGKIYGAQTLGRDGVDKRMDVIATAIKANLTVLD  454 (588)
T ss_dssp             --ESSCT----------------------TSTTCCEEEEEEEECTTTCBEEEEEEEESSSHHHHHHHHHHHHHTTCBTTT
T ss_pred             --CCccc----------------------cCCCCceEEEEEEEECCCCeEEEEEEEcCCcHHHHHHHHHHHHHcCCCHHH
Confidence              12211                      011257899999999999999999999985 89999999999999999999


Q ss_pred             HcCC
Q psy14461        532 LDGT  535 (535)
Q Consensus       532 l~~~  535 (535)
                      |.++
T Consensus       455 l~~~  458 (588)
T 3ics_A          455 LPDL  458 (588)
T ss_dssp             GGGC
T ss_pred             hhhh
Confidence            9764

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=100.00  E-value=1.5e-43  Score=367.96  Aligned_cols=351  Identities=16%  Similarity=0.118  Sum_probs=272.4

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCC--CeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQ--RRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKR  166 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~--~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  166 (535)
                      ++++|||+|++|+.+|..+...+  .+|+|+|++....|....++..   +..              .....++.     
T Consensus         5 ~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~g~~~~~~~l~~~---~~~--------------~~~~~~~~-----   62 (384)
T 2v3a_A            5 APLVIIGTGLAGYNLAREWRKLDGETPLLMITADDGRSYSKPMLSTG---FSK--------------NKDADGLA-----   62 (384)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSCCCEECGGGGGGT---TTT--------------TCCHHHHE-----
T ss_pred             CcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCCCCccCcccccHH---HhC--------------CCCHHHhh-----
Confidence            46899999999999998776665  5799999987554443333222   111              01111111     


Q ss_pred             HHHHHHHHHHHHHHhcCcEEEEeE-EEEec--CCEEEEceeEEEcceEEEeeCceecC-CCCC---CceechhhHHhcc-
Q psy14461        167 FCIRAKNDSMRELKALGIDIVRTA-AAFTN--PHTIKLSNRSVTGFNFLLAVERRCLP-EPRN---SALISADDLFRLG-  238 (535)
Q Consensus       167 ~~~~~~~~~~~~~~~~gV~~~~g~-~~~~~--~~~v~~~~~~~~~d~lViATGs~p~~-~i~G---~~v~~~~~~~~~~-  238 (535)
                           .......++..+++++.+. +..++  .++|.+++.++.||+||||||++|.. ++||   +.+++..++..+. 
T Consensus        63 -----~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~d~lviAtG~~p~~p~i~g~~~~~v~~~~~~~~~~~  137 (384)
T 2v3a_A           63 -----MAEPGAMAEQLNARILTHTRVTGIDPGHQRIWIGEEEVRYRDLVLAWGAEPIRVPVEGDAQDALYPINDLEDYAR  137 (384)
T ss_dssp             -----EECHHHHHHHTTCEEECSCCCCEEEGGGTEEEETTEEEECSEEEECCCEEECCCCCBSTTTTCEEECSSHHHHHH
T ss_pred             -----ccCHHHHHHhCCcEEEeCCEEEEEECCCCEEEECCcEEECCEEEEeCCCCcCCCCCCCcCcCCEEEECCHHHHHH
Confidence                 1112345567899988764 45443  47888877789999999999999998 8988   4577766655432 


Q ss_pred             -----CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc-CcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeC
Q psy14461        239 -----AWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH-FDQEMVRILLSSLTKAGVSI-QCCVIEKVISSF  310 (535)
Q Consensus       239 -----~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~-~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~  310 (535)
                           ..+++++|||+|++|+|+|..|+++|.+|+++++ +.+++. +++++.+.+.+.+++.||++ +++++++++.+ 
T Consensus       138 ~~~~~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~-  216 (384)
T 2v3a_A          138 FRQAAAGKRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPGLLHPAAAKAVQAGLEGLGVRFHLGPVLASLKKA-  216 (384)
T ss_dssp             HHHHHTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTSCHHHHHHHHHHHHTTTCEEEESCCEEEEEEE-
T ss_pred             HHHhhccCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcchhhcccCHHHHHHHHHHHHHcCCEEEeCCEEEEEEec-
Confidence                 2389999999999999999999999999999999 888876 58999999999999999999 99999999876 


Q ss_pred             CCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCC-CC--CC
Q psy14461        311 DGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVH-GK--PN  387 (535)
Q Consensus       311 ~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~-~~--~~  387 (535)
                      ++.+.|++.   +|+  ++++|.|++|+|++|+++++  +.+|++++ +| |.||+++||+.|+|||+|||+. .+  ..
T Consensus       217 ~~~~~v~~~---~g~--~i~~d~vv~a~G~~p~~~l~--~~~g~~~~-~g-i~vd~~~~t~~~~IyA~GD~~~~~~~~~~  287 (384)
T 2v3a_A          217 GEGLEAHLS---DGE--VIPCDLVVSAVGLRPRTELA--FAAGLAVN-RG-IVVDRSLRTSHANIYALGDCAEVDGLNLL  287 (384)
T ss_dssp             TTEEEEEET---TSC--EEEESEEEECSCEEECCHHH--HHTTCCBS-SS-EEECTTCBCSSTTEEECGGGEEETTBCCC
T ss_pred             CCEEEEEEC---CCC--EEECCEEEECcCCCcCHHHH--HHCCCCCC-CC-EEECCCCCCCCCCEEEeeeeeeECCCCcc
Confidence            455667763   676  79999999999999999864  77888887 68 9999999999999999999983 12  23


Q ss_pred             cHHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEEcC-CceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcc
Q psy14461        388 NASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGD-VEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPEN  466 (535)
Q Consensus       388 ~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~-~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  466 (535)
                      .++.|.+||++||+||+|.. .++++..+|+++|+. +++.++|+++.+   .    .....          .       
T Consensus       288 ~~~~a~~~g~~~a~~i~g~~-~~~~~~~~p~~~~~~~~~~~~~g~~~~~---~----~~~~~----------~-------  342 (384)
T 2v3a_A          288 YVMPLMACARALAQTLAGNP-SQVAYGPMPVTVKTPACPLVVSPPPRGM---D----GQWLV----------E-------  342 (384)
T ss_dssp             SHHHHHHHHHHHHHHHTTCC-CCCCCCCCCEEECCTTSCEEEECCCTTC---C----CEEEE----------E-------
T ss_pred             hHHHHHHHHHHHHHHhcCCC-ccCCCCCcceEEEECCeeEEEecCCCCC---C----ceEEE----------E-------
Confidence            57779999999999999865 567888899999986 589999986531   0    11000          0       


Q ss_pred             hhhhhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHH
Q psy14461        467 FVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYS  520 (535)
Q Consensus       467 ~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~  520 (535)
                                        +++.||.|++++ ++++|+|+|++|++|+|+++.+.
T Consensus       343 ------------------~~~~g~~~~~~~-~~~~i~G~~~~g~~a~e~~~~~~  377 (384)
T 2v3a_A          343 ------------------GSGTDLKVLCRD-TAGRVIGYALTGAAVNEKLALNK  377 (384)
T ss_dssp             ------------------EETTEEEEEEEC-TTSCEEEEEEEGGGGGGHHHHHT
T ss_pred             ------------------ecCCcEEEEEEc-cCCEEEEEEEECcchHHHHHHHH
Confidence                              024689999988 67999999999999999988754

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=4.4e-45  Score=376.91  Aligned_cols=326  Identities=17%  Similarity=0.217  Sum_probs=252.2

Q ss_pred             EEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHHHH
Q psy14461         90 YLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRFCI  169 (535)
Q Consensus        90 ~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  169 (535)
                      +++|||+|++|+.+|..+...+ +|+|||+++...|.++.++.+   +.+              ..++.++..+      
T Consensus        10 ~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~~~~~~~~l~~~---~~g--------------~~~~~~~~~~------   65 (367)
T 1xhc_A           10 KVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVPYYSKPMLSHY---IAG--------------FIPRNRLFPY------   65 (367)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTS-EEEEECSSSSCCCCSTTHHHH---HTT--------------SSCGGGGCSS------
T ss_pred             cEEEECCcHHHHHHHHHHhhcC-CEEEEECCCCCccccchhHHH---HhC--------------CCCHHHhccC------
Confidence            6799999999999999887777 999999999776655544433   222              1122222111      


Q ss_pred             HHHHHHHHHHHhcCcEEEEeE-EEEecC--CEEEEceeEEEcceEEEeeCceecC-CCCC-Cceec---hhhHHhccC--
Q psy14461        170 RAKNDSMRELKALGIDIVRTA-AAFTNP--HTIKLSNRSVTGFNFLLAVERRCLP-EPRN-SALIS---ADDLFRLGA--  239 (535)
Q Consensus       170 ~~~~~~~~~~~~~gV~~~~g~-~~~~~~--~~v~~~~~~~~~d~lViATGs~p~~-~i~G-~~v~~---~~~~~~~~~--  239 (535)
                           ..+.+++.||+++.++ +..++.  ++|..++.++.||+||||||++|+. ++|| +++++   .+++..+..  
T Consensus        66 -----~~~~~~~~~v~~~~g~~v~~id~~~~~V~~~g~~~~~d~lViATGs~p~~p~i~G~~~v~~~~~~~~~~~l~~~~  140 (367)
T 1xhc_A           66 -----SLDWYRKRGIEIRLAEEAKLIDRGRKVVITEKGEVPYDTLVLATGARAREPQIKGKEYLLTLRTIFDADRIKESI  140 (367)
T ss_dssp             -----CHHHHHHHTEEEECSCCEEEEETTTTEEEESSCEEECSEEEECCCEEECCCCSBTGGGEECCCSHHHHHHHHHHH
T ss_pred             -----CHHHHHhCCcEEEECCEEEEEECCCCEEEECCcEEECCEEEECCCCCCCCCCCCCcCCEEEEcCHHHHHHHHHHh
Confidence                 1244566799999884 666653  4666344789999999999999999 8998 55554   455555432  


Q ss_pred             -CCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEE
Q psy14461        240 -WPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGV  316 (535)
Q Consensus       240 -~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v  316 (535)
                       .+++++|||||++|+|+|..|+++|.+||++++ +++++ +++++.+.+.+.++++||++ +++++++++.   +  .|
T Consensus       141 ~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~---~--~v  214 (367)
T 1xhc_A          141 ENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG-LDEELSNMIKDMLEETGVKFFLNSELLEANE---E--GV  214 (367)
T ss_dssp             HHHSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT-CCHHHHHHHHHHHHHTTEEEECSCCEEEECS---S--EE
T ss_pred             hcCCcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCeecc-CCHHHHHHHHHHHHHCCCEEEcCCEEEEEEe---e--EE
Confidence             358999999999999999999999999999999 89999 99999999999999999999 9999999862   2  35


Q ss_pred             EEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCC--CC-CCcHHHHH
Q psy14461        317 RGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVH--GK-PNNASMAA  393 (535)
Q Consensus       317 ~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~--~~-~~~~~~A~  393 (535)
                      +++   +|+   +++|.|++|+|++||++++  +.++++.+ +| |.||+++||+.|+|||+|||+.  +. +++++.|.
T Consensus       215 ~~~---~g~---i~~D~vi~a~G~~p~~~ll--~~~gl~~~-~g-i~Vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~A~  284 (367)
T 1xhc_A          215 LTN---SGF---IEGKVKICAIGIVPNVDLA--RRSGIHTG-RG-ILIDDNFRTSAKDVYAIGDCAEYSGIIAGTAKAAM  284 (367)
T ss_dssp             EET---TEE---EECSCEEEECCEEECCHHH--HHTTCCBS-SS-EECCTTSBCSSTTEEECGGGEEBTTBCCCSHHHHH
T ss_pred             EEC---CCE---EEcCEEEECcCCCcCHHHH--HhCCCCCC-CC-EEECCCcccCCCCEEEeEeeeecCCCCccHHHHHH
Confidence            663   553   8999999999999999865  77888876 55 9999999999999999999973  22 46899999


Q ss_pred             HHHHHHHHHHhCCCCCCCCCCCCc--EEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcchhhhh
Q psy14461        394 ISARLIIERLYGMQDQLMDYSFLP--VVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLV  471 (535)
Q Consensus       394 ~~g~~aa~~i~g~~~~~~~~~~~p--~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  471 (535)
                      +||++||+||++.. .++++ .+|  ++.|++|+++++|++++++.        ++                        
T Consensus       285 ~qg~~aa~~i~g~~-~~~~~-~~~~~~~~~~~~~~~~vG~~~~~~~--------~~------------------------  330 (367)
T 1xhc_A          285 EQARVLADILKGEP-RRYNF-KFRSTVFKFGKLQIAIIGNTKGEGK--------WI------------------------  330 (367)
T ss_dssp             HHHHHHHHHHTTCC-CCCCS-SCCEEEEEETTEEEEEEECCSSCEE--------EE------------------------
T ss_pred             HHHHHHHHHhcCCC-ccCCC-CCCceEEEECCceEEEECCCCCCCc--------cc------------------------
Confidence            99999999999864 33333 234  35899999999999987321        11                        


Q ss_pred             hccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCch
Q psy14461        472 CLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNV  512 (535)
Q Consensus       472 ~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a  512 (535)
                                      .+|+|++++  +++|||+|++|+.+
T Consensus       331 ----------------~~~~k~~~~--~~~ilG~~~~g~~~  353 (367)
T 1xhc_A          331 ----------------EDNTKVFYE--NGKIIGAVVFNDIR  353 (367)
T ss_dssp             ----------------ETTEEEEC-------CEEEEESCHH
T ss_pred             ----------------ceEEEEEEE--CCEEEEEEEECChH
Confidence                            258999997  48999999999864

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=100.00  E-value=2.3e-44  Score=373.61  Aligned_cols=344  Identities=14%  Similarity=0.215  Sum_probs=272.4

Q ss_pred             EEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHHHH
Q psy14461         90 YLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRFCI  169 (535)
Q Consensus        90 ~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  169 (535)
                      +|+|||+|++|+.+|..+...+.+|+|||++++++|.++.++.+   +.+.              .+..++.        
T Consensus        11 ~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~y~~~~l~~~---l~g~--------------~~~~~l~--------   65 (385)
T 3klj_A           11 KILILGAGPAGFSAAKAALGKCDDITMINSEKYLPYYRPRLNEI---IAKN--------------KSIDDIL--------   65 (385)
T ss_dssp             SEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCCBCGGGHHHH---HHSC--------------CCGGGTB--------
T ss_pred             CEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCCcccChhhHH---HcCC--------------CCHHHcc--------
Confidence            46999999999999998877889999999999998887777655   3321              0111111        


Q ss_pred             HHHHHHHHHHHhcCcEEEEe-EEEEec--CCEEEEce-eEEEcceEEEeeCceecC-CCCC-Ccee---chhhHHhccC-
Q psy14461        170 RAKNDSMRELKALGIDIVRT-AAAFTN--PHTIKLSN-RSVTGFNFLLAVERRCLP-EPRN-SALI---SADDLFRLGA-  239 (535)
Q Consensus       170 ~~~~~~~~~~~~~gV~~~~g-~~~~~~--~~~v~~~~-~~~~~d~lViATGs~p~~-~i~G-~~v~---~~~~~~~~~~-  239 (535)
                         ....+++++.+|+++.+ ++..++  .++|++.+ .++.||+||||||++|+. ++|| ++++   +.+++..+.. 
T Consensus        66 ---~~~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g~~~~yd~lvlAtG~~p~~p~i~G~~~v~~~~~~~d~~~l~~~  142 (385)
T 3klj_A           66 ---IKKNDWYEKNNIKVITSEFATSIDPNNKLVTLKSGEKIKYEKLIIASGSIANKIKVPHADEIFSLYSYDDALKIKDE  142 (385)
T ss_dssp             ---SSCHHHHHHTTCEEECSCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECCCCCTTCSCEECCSSHHHHHHHHHH
T ss_pred             ---CCCHHHHHHCCCEEEeCCEEEEEECCCCEEEECCCCEEECCEEEEecCCCcCCCCCCCCCCeEEeCCHHHHHHHHHH
Confidence               11224566789999987 465544  56888865 689999999999999999 9999 5554   4566655542 


Q ss_pred             --CCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc-CcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcE
Q psy14461        240 --WPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH-FDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMK  314 (535)
Q Consensus       240 --~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~-~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~  314 (535)
                        .+++|+|||||++|+|+|..|+++|.+||++++ +++++. +++++.+.+.+.+++.||++ +++.++++        
T Consensus       143 l~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i--------  214 (385)
T 3klj_A          143 CKNKGKAFIIGGGILGIELAQAIIDSGTPASIGIILEYPLERQLDRDGGLFLKDKLDRLGIKIYTNSNFEEM--------  214 (385)
T ss_dssp             HHHHSCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTTSCHHHHHHHHHHHHTTTCEEECSCCGGGC--------
T ss_pred             hhcCCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchhhcCHHHHHHHHHHHHhCCCEEEeCCEEEEc--------
Confidence              268999999999999999999999999999999 888875 89999999999999999999 88776544        


Q ss_pred             EEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCC--C-CCCcHHH
Q psy14461        315 GVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVH--G-KPNNASM  391 (535)
Q Consensus       315 ~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~--~-~~~~~~~  391 (535)
                               |+  ++++|.|++|+|++||++++  +.++++.+ +| |.||++++|+.|+|||+|||+.  + .+.+++.
T Consensus       215 ---------g~--~~~~D~vv~a~G~~p~~~~~--~~~gl~~~-~g-i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~  279 (385)
T 3klj_A          215 ---------GD--LIRSSCVITAVGVKPNLDFI--KDTEIASK-RG-ILVNDHMETSIKDIYACGDVAEFYGKNPGLINI  279 (385)
T ss_dssp             ---------HH--HHHHSEEEECCCEEECCGGG--TTSCCCBS-SS-EEECTTCBCSSTTEEECGGGEEETTBCCCCHHH
T ss_pred             ---------Ce--EEecCeEEECcCcccChhhh--hhcCCCcC-CC-EEECCCcccCCCCEEEEEeeEecCCCcccHHHH
Confidence                     23  58899999999999999886  77788876 56 9999999999999999999983  1 3678899


Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCCC-Cc--EEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcchh
Q psy14461        392 AAISARLIIERLYGMQDQLMDYSF-LP--VVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFV  468 (535)
Q Consensus       392 A~~~g~~aa~~i~g~~~~~~~~~~-~p--~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  468 (535)
                      |..||++||+||+|....   |.. .|  |..+++++++++|+++.+.    .  +. +..        .  +       
T Consensus       280 A~~qg~~aa~~i~g~~~~---~~~~~~~~~~~~~~~~~~~~G~~~~~~----~--~~-~~~--------~--~-------  332 (385)
T 3klj_A          280 ANKQGEVAGLNACGEDAS---YSEIIPSPILKVSGISIISCGDIENNK----P--SK-VFR--------S--T-------  332 (385)
T ss_dssp             HHHHHHHHHHHHTTCCCC---CCCCCCCCEEEETTEEEEEESCCTTCC----C--SE-EEE--------E--E-------
T ss_pred             HHHHHHHHHHHhcCCCcC---CCCCCCcEEEEeCCCcEEEEcCCCCCC----C--eE-EEE--------E--C-------
Confidence            999999999999996543   333 34  5566899999999997642    1  22 111        0  1       


Q ss_pred             hhhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHH
Q psy14461        469 KLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAEL  532 (535)
Q Consensus       469 ~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l  532 (535)
                                       .+..|+|++++  +++|+|++++|+.+.+.  .+..+|+++.++++|
T Consensus       333 -----------------~~~~~~~~~~~--~~~l~g~~~~g~~~~~~--~~~~~i~~~~~~~~~  375 (385)
T 3klj_A          333 -----------------QEDKYIVCMLK--ENKIDAAAVIGDVSLGT--KLKKAIDSSKSFDNI  375 (385)
T ss_dssp             -----------------CSSCEEEEEEE--TTEEEEEEEESCHHHHH--HHHHHHHTTCBCSCC
T ss_pred             -----------------CCCeEEEEEEE--CCEEEEEEEECCcHHHH--HHHHHHHcCCCcccc
Confidence                             23579999995  68999999999976554  788999999988775

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=100.00  E-value=8.9e-41  Score=349.70  Aligned_cols=354  Identities=15%  Similarity=0.123  Sum_probs=269.8

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCC--eEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQR--RDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKR  166 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~--~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  166 (535)
                      ++|+|||+|++|+.+|..+...+.  +|+|||+++.++|..+.++...  +.+.              . .         
T Consensus         8 ~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~~~~~~--~~~~--------------~-~---------   61 (408)
T 2gqw_A            8 APVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDF--MAHG--------------D-A---------   61 (408)
T ss_dssp             SSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSGGGGTHH--HHHC--------------C-G---------
T ss_pred             CcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCCcccCCCCCHHH--hCCC--------------c-h---------
Confidence            468999999999999987765554  6999999988776654443210  1110              0 0         


Q ss_pred             HHHHHHHHHHHHHHhcCcEEEEeE-EEEec--CCEEEEce-eEEEcceEEEeeCceecC-CC-CC--Cce---echhhHH
Q psy14461        167 FCIRAKNDSMRELKALGIDIVRTA-AAFTN--PHTIKLSN-RSVTGFNFLLAVERRCLP-EP-RN--SAL---ISADDLF  235 (535)
Q Consensus       167 ~~~~~~~~~~~~~~~~gV~~~~g~-~~~~~--~~~v~~~~-~~~~~d~lViATGs~p~~-~i-~G--~~v---~~~~~~~  235 (535)
                        +++..  . .+++.+|+++.++ +..++  .++|.+.+ .++.||+||||||++|.. ++ ||  +++   .+.+++.
T Consensus        62 --~~~~~--~-~~~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~i~~G~~~~v~~~~~~~~~~  136 (408)
T 2gqw_A           62 --EKIRL--D-CKRAPEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRALPTLQGATMPVHTLRTLEDAR  136 (408)
T ss_dssp             --GGSBC--C-CTTSCSCEEEETCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECCCGGGTTCSSCEEECCSHHHHH
T ss_pred             --hhhhH--H-HHHHCCCEEEcCCEEEEEECCCCEEEECCCCEEECCEEEECCCCCCCCCCccCCCCCcEEEECCHHHHH
Confidence              00000  0 3456799999986 66655  46788854 689999999999999998 88 88  344   3566765


Q ss_pred             hccC---CCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCc-cCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEe
Q psy14461        236 RLGA---WPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLK-HFDQEMVRILLSSLTKAGVSI-QCCVIEKVISS  309 (535)
Q Consensus       236 ~~~~---~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~-~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~  309 (535)
                      .+..   .+++|+|||+|++|+|+|..|+++|.+||++++ +.+++ .+++++.+.+.+.+++.||++ +++++++++ +
T Consensus       137 ~l~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~-~  215 (408)
T 2gqw_A          137 RIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFERSVTGSV-D  215 (408)
T ss_dssp             HHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTSCHHHHHHHHHHHHHTTCEEEESCCEEEEE-T
T ss_pred             HHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCcccccccCHHHHHHHHHHHHHcCcEEEeCCEEEEEE-C
Confidence            5532   479999999999999999999999999999999 88887 589999999999999999999 999999998 3


Q ss_pred             CCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCC---
Q psy14461        310 FDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKP---  386 (535)
Q Consensus       310 ~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~---  386 (535)
                        +  .|++.   +|+  ++++|.|++|+|++||++++  +.++++++ +| |.||+++||+.|+|||+|||+ ..+   
T Consensus       216 --~--~v~~~---~g~--~i~~D~vi~a~G~~p~~~l~--~~~gl~~~-~g-i~Vd~~~~t~~~~IyA~GD~~-~~~~~~  281 (408)
T 2gqw_A          216 --G--VVLLD---DGT--RIAADMVVVGIGVLANDALA--RAAGLACD-DG-IFVDAYGRTTCPDVYALGDVT-RQRNPL  281 (408)
T ss_dssp             --T--EEEET---TSC--EEECSEEEECSCEEECCHHH--HHHTCCBS-SS-EECCTTCBCSSTTEEECGGGE-EEEETT
T ss_pred             --C--EEEEC---CCC--EEEcCEEEECcCCCccHHHH--HhCCCCCC-CC-EEECCCCccCCCCEEEEEEEE-EecCcc
Confidence              3  56663   676  89999999999999999875  77788876 56 999999999999999999999 432   


Q ss_pred             -------CcHHHHHHHHHHHHHHHhCCCCCCCCCCCCcEE--EEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCccc
Q psy14461        387 -------NNASMAAISARLIIERLYGMQDQLMDYSFLPVV--VRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDN  457 (535)
Q Consensus       387 -------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~--~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~  457 (535)
                             .+++.|.+||++||.||++...  ..|..+|+.  .+++++++++|+ +.     ..  ...+ .   ..   
T Consensus       282 ~g~~~~~~~~~~A~~~g~~aa~~i~g~~~--~~~~~~p~~~~~~~~~~~~~~G~-~~-----~~--~~~~-~---~~---  344 (408)
T 2gqw_A          282 SGRFERIETWSNAQNQGIAVARHLVDPTA--PGYAELPWYWSDQGALRIQVAGL-AS-----GD--EEIV-R---GE---  344 (408)
T ss_dssp             TTEEECCCCHHHHHHHHHHHHHHHHCTTS--CCCCCCCEEEEEETTEEEEEEEC-SC-----CS--EEEE-E---SC---
T ss_pred             CCceeeccHHHHHHHHHHHHHHHhcCCCC--CcCCCCCeEEEEECCceEEEECC-CC-----CC--EEEE-E---cc---
Confidence                   2678999999999999998653  146667754  456799999999 21     11  1111 1   00   


Q ss_pred             ccCCCCCcchhhhhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCH--HHHcC
Q psy14461        458 LLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTK--AELDG  534 (535)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~--~~l~~  534 (535)
                         +..                      ...+|.+++.+  +++|+|++++|+.+  .+..+..+|+.++++  .+|.+
T Consensus       345 ---~~~----------------------~~~~~~~~~~~--~~~l~G~~~~g~~~--~~~~~~~~i~~~~~~~~~~l~~  394 (408)
T 2gqw_A          345 ---VSL----------------------DAPKFTLIELQ--KGRIVGATCVNNAR--DFAPLRRLLAVGAKPDRAALAD  394 (408)
T ss_dssp             ---CCS----------------------SSCCEEEEEEE--TTEEEEEEEESCHH--HHHHHHHHHHTTCCCCHHHHHC
T ss_pred             ---CCC----------------------CCCeEEEEEEe--CCEEEEEEEECChH--HHHHHHHHHHCCCCCChHHhcC
Confidence               110                      13568888875  79999999999864  357889999999854  55544

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=100.00  E-value=1.9e-40  Score=349.58  Aligned_cols=363  Identities=18%  Similarity=0.133  Sum_probs=277.4

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCC--eEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQR--RDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKR  166 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~--~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  166 (535)
                      ++++|||+|++|+.+|..+...+.  +|+|||+++.++|..+.+....  +.+.              ..+..+      
T Consensus         5 ~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~--~~~~--------------~~~~~~------   62 (431)
T 1q1r_A            5 DNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAY--LAGK--------------ATAESL------   62 (431)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTT--TTTC--------------SCSGGG------
T ss_pred             CcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCCCcCCCCcHHH--hCCC--------------CChHHh------
Confidence            478999999999999987776665  8999999987766544332110  1110              001000      


Q ss_pred             HHHHHHHHHHHHHHhcCcEEEEeE-EEEec--CCEEEEce-eEEEcceEEEeeCceecC-CCCC---Cc---e---echh
Q psy14461        167 FCIRAKNDSMRELKALGIDIVRTA-AAFTN--PHTIKLSN-RSVTGFNFLLAVERRCLP-EPRN---SA---L---ISAD  232 (535)
Q Consensus       167 ~~~~~~~~~~~~~~~~gV~~~~g~-~~~~~--~~~v~~~~-~~~~~d~lViATGs~p~~-~i~G---~~---v---~~~~  232 (535)
                           .....+.+++.||+++.++ +..++  .++|.+.+ .++.||+||||||++|+. ++||   .+   +   .+.+
T Consensus        63 -----~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~p~~~~i~G~~~~~~~~v~~~~~~~  137 (431)
T 1q1r_A           63 -----YLRTPDAYAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPRPLPVASGAVGKANNFRYLRTLE  137 (431)
T ss_dssp             -----BSSCHHHHHHTTEEEECSCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECCCGGGTTHHHHSTTEEESSSHH
T ss_pred             -----cccCHHHHHhCCCEEEeCCEEEEEECCCCEEEECCCCEEECCEEEEcCCCCccCCCCCCcccCCCceEEEECCHH
Confidence                 0011244566899998875 45544  46788754 689999999999999998 8888   23   4   3566


Q ss_pred             hHHhcc---CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc-CcHHHHHHHHHhhhcCCeEE-cceEEEEE
Q psy14461        233 DLFRLG---AWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH-FDQEMVRILLSSLTKAGVSI-QCCVIEKV  306 (535)
Q Consensus       233 ~~~~~~---~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~-~~~~~~~~~~~~l~~~gV~i-~~~~v~~i  306 (535)
                      ++..+.   ..+++|+|||+|++|+|+|..|++.|.+|+++++ +.+++. +++++.+.+.+.+++.||++ +++.++++
T Consensus       138 d~~~l~~~l~~~~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i  217 (431)
T 1q1r_A          138 DAECIRRQLIADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGF  217 (431)
T ss_dssp             HHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHHTCEEECSCCEEEE
T ss_pred             HHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCccccchhhHHHHHHHHHHHHhCCeEEEeCCEEEEE
Confidence            665543   3479999999999999999999999999999999 888874 89999999999999999999 99999999


Q ss_pred             EE--eCCCcE-EEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCC
Q psy14461        307 IS--SFDGMK-GVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVH  383 (535)
Q Consensus       307 ~~--~~~~~~-~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~  383 (535)
                      +.  . ++++ .|++   .+|+  ++++|.|++|+|++|+++++  +.++++++ +| |.||++++|+.|+|||+|||+ 
T Consensus       218 ~~~~~-~~~v~~v~~---~~G~--~i~~D~Vv~a~G~~p~~~l~--~~~gl~~~-~g-i~Vd~~~~ts~~~IyA~GD~~-  286 (431)
T 1q1r_A          218 EMSTD-QQKVTAVLC---EDGT--RLPADLVIAGIGLIPNCELA--SAAGLQVD-NG-IVINEHMQTSDPLIMAVGDCA-  286 (431)
T ss_dssp             EECTT-TCCEEEEEE---TTSC--EEECSEEEECCCEEECCHHH--HHTTCCBS-SS-EECCTTSBCSSTTEEECGGGE-
T ss_pred             EeccC-CCcEEEEEe---CCCC--EEEcCEEEECCCCCcCcchh--hccCCCCC-CC-EEECCCcccCCCCEEEEEeEE-
Confidence            86  4 3444 5666   3676  89999999999999999875  77788876 56 999999999999999999999 


Q ss_pred             CCC----------CcHHHHHHHHHHHHHHHhCCCCCCCCCCCCcEE--EEcCCceeeecCCHHHHHHhcCCCCEEEEEEe
Q psy14461        384 GKP----------NNASMAAISARLIIERLYGMQDQLMDYSFLPVV--VRGDVEFGTVGMSEEAAAKVYGADGLVIYKSS  451 (535)
Q Consensus       384 ~~~----------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~--~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~  451 (535)
                      ..+          ..++.|..||++||.||+|...   .|..+|+.  .+++++++++|+++..     .  .+.+ ...
T Consensus       287 ~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~~---~~~~~p~~~~~~~~~~~~~~G~~~~~-----~--~~~~-~~~  355 (431)
T 1q1r_A          287 RFHSQLYDRWVRIESVPNALEQARKIAAILCGKVP---RDEAAPWFWSDQYEIGLKMVGLSEGY-----D--RIIV-RGS  355 (431)
T ss_dssp             EEEETTTTEEEECCSHHHHHHHHHHHHHHHTTCCC---CCCCCCEEEEEETTEEEEEEECCTTC-----S--EEEE-EEE
T ss_pred             EEccccCCceEeeCHHHHHHHHHHHHHHHhcCCCC---CCCCCCeEEEEECCceEEEEeCCCCC-----C--EEEE-Ecc
Confidence            432          2567899999999999998653   45567754  3457899999997631     1  1211 110


Q ss_pred             cCCcccccCCCCCcchhhhhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHH
Q psy14461        452 YPTFDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAE  531 (535)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~  531 (535)
                               +                        ....|++++.  ++++|+|++++|+.+.+.+...+++++.+++.++
T Consensus       356 ---------~------------------------~~~~~~~~~~--~~~~l~G~~~~g~~~~~~~~~~~i~~~~~~~~~~  400 (431)
T 1q1r_A          356 ---------L------------------------AQPDFSVFYL--QGDRVLAVDTVNRPVEFNQSKQIITDRLPVEPNL  400 (431)
T ss_dssp             ---------T------------------------TTTEEEEEEE--ETTEEEEEEEESCHHHHHHHHHHHHTTCCCCHHH
T ss_pred             ---------C------------------------CCCeEEEEEE--eCCEEEEEEEECChHHHHHHHHHHHCCCCCCHHH
Confidence                     1                        1246777654  3799999999999999999999999999999999


Q ss_pred             HcCC
Q psy14461        532 LDGT  535 (535)
Q Consensus       532 l~~~  535 (535)
                      |.++
T Consensus       401 l~~~  404 (431)
T 1q1r_A          401 LGDE  404 (431)
T ss_dssp             HTCT
T ss_pred             hhCC
Confidence            8763

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=100.00  E-value=1.7e-39  Score=340.28  Aligned_cols=358  Identities=15%  Similarity=0.144  Sum_probs=268.5

Q ss_pred             EEEeeCCccHHHHHHHHHhhCCCe--EEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHH
Q psy14461         90 YLDRIGDEGILLEEELKRQTNQRR--DELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRF  167 (535)
Q Consensus        90 ~v~iiG~G~aG~~~al~~~~~~~~--V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  167 (535)
                      +|+|||+|++|+++|..+...+.+  |+|||++++++|.+..++...  +.+...   . .   .. ..           
T Consensus         4 ~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~y~~~~l~~~~--~~g~~~---~-~---~~-~~-----------   62 (410)
T 3ef6_A            4 HVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYDRPSLSKAV--LDGSLE---R-P---PI-LA-----------   62 (410)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSSBCSGGGGTHH--HHTSSS---S-C---CB-SS-----------
T ss_pred             CEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCCcCCccccHHH--hCCCCC---H-H---Hh-cC-----------
Confidence            689999999999999877666655  999999998888765544310  111100   0 0   00 00           


Q ss_pred             HHHHHHHHHHHHHhcCcEEEEe-EEEEec--CCEEEEce-eEEEcceEEEeeCceecC-CCCC---Ccee---chhhHHh
Q psy14461        168 CIRAKNDSMRELKALGIDIVRT-AAAFTN--PHTIKLSN-RSVTGFNFLLAVERRCLP-EPRN---SALI---SADDLFR  236 (535)
Q Consensus       168 ~~~~~~~~~~~~~~~gV~~~~g-~~~~~~--~~~v~~~~-~~~~~d~lViATGs~p~~-~i~G---~~v~---~~~~~~~  236 (535)
                             ...++++.+|+++.+ ++..++  .++|.+.+ .++.||+||||||++|+. ++||   ++++   +.+++..
T Consensus        63 -------~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~~d~lvlAtG~~p~~~~ipG~~~~~v~~~~~~~d~~~  135 (410)
T 3ef6_A           63 -------EADWYGEARIDMLTGPEVTALDVQTRTISLDDGTTLSADAIVIATGSRARTMALPGSQLPGVVTLRTYGDVQV  135 (410)
T ss_dssp             -------CTTHHHHTTCEEEESCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECCCCCTTTTSTTEECCCSHHHHHH
T ss_pred             -------CHHHHHHCCCEEEeCCEEEEEECCCCEEEECCCCEEECCEEEEccCCcccCCCCCCccccceEEeccHHHHHH
Confidence                   013455679999999 676655  45787765 689999999999999999 8998   3444   5566554


Q ss_pred             cc---CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCc-cCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeC
Q psy14461        237 LG---AWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLK-HFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSF  310 (535)
Q Consensus       237 ~~---~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~-~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~  310 (535)
                      +.   ..+++++|||+|++|+|+|..|++.|.+||++++ +.+++ .+++++.+.+.+.++++||++ +++.+++++.+ 
T Consensus       136 l~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~-  214 (410)
T 3ef6_A          136 LRDSWTSATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELLVRVLGRRIGAWLRGLLTELGVQVELGTGVVGFSGE-  214 (410)
T ss_dssp             HHHHCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSHHHHCHHHHHHHHHHHHHHTCEEECSCCEEEEECS-
T ss_pred             HHHHhccCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccchhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEecc-
Confidence            43   3479999999999999999999999999999999 88886 589999999999999999999 99999999875 


Q ss_pred             CCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCC----
Q psy14461        311 DGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKP----  386 (535)
Q Consensus       311 ~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~----  386 (535)
                      +....|++.   +|+  ++++|.|++|+|++|+++++  +.+|++++ +| |.||++++|+.|+|||+|||+ ..+    
T Consensus       215 ~~~~~v~~~---dg~--~i~aD~Vv~a~G~~p~~~l~--~~~gl~~~-~g-i~vd~~~~t~~~~IyA~GD~a-~~~~~~g  284 (410)
T 3ef6_A          215 GQLEQVMAS---DGR--SFVADSALICVGAEPADQLA--RQAGLACD-RG-VIVDHCGATLAKGVFAVGDVA-SWPLRAG  284 (410)
T ss_dssp             SSCCEEEET---TSC--EEECSEEEECSCEEECCHHH--HHTTCCBS-SS-EECCTTSBCSSTTEEECGGGE-EEEBTTS
T ss_pred             CcEEEEEEC---CCC--EEEcCEEEEeeCCeecHHHH--HhCCCccC-Ce-EEEccCeeECCCCEEEEEcce-eccCCCC
Confidence            333467773   787  89999999999999999876  77888887 55 999999999999999999998 432    


Q ss_pred             -----CcHHHHHHHHHHHHHHHhCCCCCCCCCCCCc--EEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCccccc
Q psy14461        387 -----NNASMAAISARLIIERLYGMQDQLMDYSFLP--VVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLL  459 (535)
Q Consensus       387 -----~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p--~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~  459 (535)
                           ..++.|..||++||+||+|...   .|..+|  |+.+++..+.++|+++..        + ++..   .      
T Consensus       285 ~~~~~~~~~~A~~qg~~aa~~i~g~~~---~~~~~p~~~~~~~~~~~~~~G~~~~~--------~-~~~~---~------  343 (410)
T 3ef6_A          285 GRRSLETYMNAQRQAAAVAAAILGKNV---SAPQLPVSWTEIAGHRMQMAGDIEGP--------G-DFVS---R------  343 (410)
T ss_dssp             SEECCCCHHHHHHHHHHHHHHHTTCCC---CCCBCCEEEEEETTEEEEEESCSSSS--------S-EEEE---E------
T ss_pred             CeeeechHHHHHHHHHHHHHHHcCCCC---CCCCCCeeEEEECCceEEEEcCCCCC--------C-EEEE---E------
Confidence                 2478999999999999999653   455667  556678899999987531        1 1110   0      


Q ss_pred             CCCCCcchhhhhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCC--CHHHHcC
Q psy14461        460 DPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFL--TKAELDG  534 (535)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~--t~~~l~~  534 (535)
                        ...                     ....|.+++++  +++|+|++++|..  .....+..+|..+.  +.++|.+
T Consensus       344 --~~~---------------------~~~~~~~~~~~--~~~l~g~~~~~~~--~~~~~~~~~i~~~~~~~~~~l~~  393 (410)
T 3ef6_A          344 --GMP---------------------GSGAALLFRLQ--ERRIQAVVAVDAP--RDFALATRLVEARAAIEPARLAD  393 (410)
T ss_dssp             --SCT---------------------TSSSEEEEEEE--TTEEEEEEEESCH--HHHHHHHHHHHHTCBCCHHHHHC
T ss_pred             --eeC---------------------CCCeEEEEEEE--CCEEEEEEEECCh--HHHHHHHHHHhCCCCCCHHHhcC
Confidence              000                     12458887774  6899999999984  23334445555544  4455543

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=100.00  E-value=1.2e-38  Score=334.39  Aligned_cols=361  Identities=15%  Similarity=0.145  Sum_probs=272.9

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCe--EEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHH
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRR--DELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIK  165 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~--V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~  165 (535)
                      ..+|+|||+|++|+++|..+...+.+  |+|||++++++|.+..++...  +.+.              .+...+.    
T Consensus         9 ~~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~--~~~~--------------~~~~~~~----   68 (415)
T 3lxd_A            9 RADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYERPPLSKEY--LARE--------------KTFERIC----   68 (415)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSCCBCSGGGGTTT--TTTS--------------SCSGGGB----
T ss_pred             CCcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCCCcCcccCCHHH--HcCC--------------CCHHHhc----
Confidence            46899999999999999877766655  999999998887765444210  2211              0011111    


Q ss_pred             HHHHHHHHHHHHHHHhcCcEEEEe-EEEEec--CCEEEEce-eEEEcceEEEeeCceecC-CCCC---Ccee---chhhH
Q psy14461        166 RFCIRAKNDSMRELKALGIDIVRT-AAAFTN--PHTIKLSN-RSVTGFNFLLAVERRCLP-EPRN---SALI---SADDL  234 (535)
Q Consensus       166 ~~~~~~~~~~~~~~~~~gV~~~~g-~~~~~~--~~~v~~~~-~~~~~d~lViATGs~p~~-~i~G---~~v~---~~~~~  234 (535)
                             ......++..+|+++.+ ++..++  .+++.+.+ ..+.||+||||||++|+. ++||   ++++   +.+++
T Consensus        69 -------~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~~d~lvlAtG~~~~~~~i~g~~~~~v~~~~~~~d~  141 (415)
T 3lxd_A           69 -------IRPAQFWEDKAVEMKLGAEVVSLDPAAHTVKLGDGSAIEYGKLIWATGGDPRRLSCVGADLAGVHAVRTKEDA  141 (415)
T ss_dssp             -------SSCHHHHHHTTEEEEETCCEEEEETTTTEEEETTSCEEEEEEEEECCCEECCCCBTTSSCCBTEECCCSHHHH
T ss_pred             -------cCCHHHHHHCCcEEEeCCEEEEEECCCCEEEECCCCEEEeeEEEEccCCccCCCCCCCccccCEEEEcCHHHH
Confidence                   11124556789999998 566654  45777754 689999999999999998 8888   3444   55665


Q ss_pred             Hhcc---CC-CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCc-cCcHHHHHHHHHhhhcCCeEE-cceEEEEEE
Q psy14461        235 FRLG---AW-PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLK-HFDQEMVRILLSSLTKAGVSI-QCCVIEKVI  307 (535)
Q Consensus       235 ~~~~---~~-~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~-~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~  307 (535)
                      ..+.   .. +++++|||+|++|+|+|..|++.|.+||++++ +.+++ .+++++.+.+.+.+++.||++ +++.|++++
T Consensus       142 ~~l~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~  221 (415)
T 3lxd_A          142 DRLMAELDAGAKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLARVAGEALSEFYQAEHRAHGVDLRTGAAMDCIE  221 (415)
T ss_dssp             HHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHHTTCEEEETCCEEEEE
T ss_pred             HHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchhhhhcCHHHHHHHHHHHHhCCCEEEECCEEEEEE
Confidence            5443   23 79999999999999999999999999999999 88887 589999999999999999999 999999998


Q ss_pred             EeCCCcE-EEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCC
Q psy14461        308 SSFDGMK-GVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKP  386 (535)
Q Consensus       308 ~~~~~~~-~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~  386 (535)
                      .+ ++++ .|++.   +|+  ++++|.|++|+|++|+++++  +.++++.+ +| |.||++++|+.|+|||+|||+ ..+
T Consensus       222 ~~-~~~v~~v~l~---dG~--~i~aD~Vv~a~G~~p~~~l~--~~~gl~~~-~g-i~vd~~~~t~~~~iyA~GD~a-~~~  290 (415)
T 3lxd_A          222 GD-GTKVTGVRMQ---DGS--VIPADIVIVGIGIVPCVGAL--ISAGASGG-NG-VDVDEFCRTSLTDVYAIGDCA-AHA  290 (415)
T ss_dssp             ES-SSBEEEEEES---SSC--EEECSEEEECSCCEESCHHH--HHTTCCCS-SS-EECCTTCBCSSTTEEECGGGE-EEE
T ss_pred             ec-CCcEEEEEeC---CCC--EEEcCEEEECCCCccChHHH--HhCCCCcC-CC-EEECCCCCcCCCCEEEEEeee-eec
Confidence            75 4554 57773   787  89999999999999999876  77788876 56 999999999999999999998 433


Q ss_pred             C-----------cHHHHHHHHHHHHHHHhCCCCCCCCCCCCc--EEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecC
Q psy14461        387 N-----------NASMAAISARLIIERLYGMQDQLMDYSFLP--VVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYP  453 (535)
Q Consensus       387 ~-----------~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p--~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~  453 (535)
                      .           .++.|..||++||+||+|...   .|..+|  |+.+++..+.++|++..      .  +-.+...+. 
T Consensus       291 ~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~~---~~~~~p~~~~~~~~~~~~~~G~~~~------~--~~~~~~~~~-  358 (415)
T 3lxd_A          291 NDFADGAVIRLESVQNANDMATAAAKDICGAPV---PYKATPWFWSNQYDLKLQTVGLSTG------H--DNAVLRGDP-  358 (415)
T ss_dssp             CGGGTTCEECCCSHHHHHHHHHHHHHHHTTCCC---CCCCCCEEEEEETTEEEEEEECCTT------C--SEEEEEEEG-
T ss_pred             CcccCCcceeechHHHHHHHHHHHHHHhcCCCC---CCCCCCeeEeeeCCcEEEEEeCCCC------C--CEEEEEecC-
Confidence            2           358899999999999999653   466677  57778999999999742      1  111111100 


Q ss_pred             CcccccCCCCCcchhhhhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCC--CHHH
Q psy14461        454 TFDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFL--TKAE  531 (535)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~--t~~~  531 (535)
                                                      ....|.++++.  +++|+|+..+|..  .....+..+|..+.  +.++
T Consensus       359 --------------------------------~~~~~~~~~~~--~~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~  402 (415)
T 3lxd_A          359 --------------------------------ATRSFSVVYLK--GGKVVALDCVNMV--KDYVQGKKLVEARAQIAPEQ  402 (415)
T ss_dssp             --------------------------------GGTEEEEEEEE--TTEEEEEEEESCH--HHHHHHHHHHHHTCCCCHHH
T ss_pred             --------------------------------CCCeEEEEEEE--CCEEEEEEEECCh--HHHHHHHHHHHCCCCCCHHH
Confidence                                            13568999885  5899999999983  33344555666554  4455


Q ss_pred             HcC
Q psy14461        532 LDG  534 (535)
Q Consensus       532 l~~  534 (535)
                      |.+
T Consensus       403 l~~  405 (415)
T 3lxd_A          403 LAD  405 (415)
T ss_dssp             HTC
T ss_pred             hcC
Confidence            543

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=100.00  E-value=2.9e-38  Score=330.26  Aligned_cols=358  Identities=15%  Similarity=0.144  Sum_probs=271.0

Q ss_pred             EEEeeCCccHHHHHHHHHhhCCC--eEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHH
Q psy14461         90 YLDRIGDEGILLEEELKRQTNQR--RDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRF  167 (535)
Q Consensus        90 ~v~iiG~G~aG~~~al~~~~~~~--~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  167 (535)
                      +|+|||+|++|+++|..+...+.  +|+|||++++++|.+..++...  +.+..              ....+.      
T Consensus         3 ~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~--l~~~~--------------~~~~~~------   60 (404)
T 3fg2_P            3 TVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRPPLSKAY--LKSGG--------------DPNSLM------   60 (404)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSSSBCSGGGGTGG--GGSCC--------------CTTSSB------
T ss_pred             CEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCCCCCCccCCHHH--HCCCC--------------CHHHcc------
Confidence            57999999999999987776666  8999999998887765444210  11110              000000      


Q ss_pred             HHHHHHHHHHHHHhcCcEEEEeEEEEec--CCEEEEce-eEEEcceEEEeeCceecC-CCCC---Ccee---chhhHHhc
Q psy14461        168 CIRAKNDSMRELKALGIDIVRTAAAFTN--PHTIKLSN-RSVTGFNFLLAVERRCLP-EPRN---SALI---SADDLFRL  237 (535)
Q Consensus       168 ~~~~~~~~~~~~~~~gV~~~~g~~~~~~--~~~v~~~~-~~~~~d~lViATGs~p~~-~i~G---~~v~---~~~~~~~~  237 (535)
                           ......+...+|+++..++..++  .+++.+.+ .++.||+||||||++|+. ++||   .+++   +.+++..+
T Consensus        61 -----~~~~~~~~~~~i~~~~~~v~~id~~~~~v~~~~g~~~~~d~lvlAtG~~p~~~~i~g~~~~~v~~~~~~~d~~~l  135 (404)
T 3fg2_P           61 -----FRPEKFFQDQAIELISDRMVSIDREGRKLLLASGTAIEYGHLVLATGARNRMLDVPNASLPDVLYLRTLDESEVL  135 (404)
T ss_dssp             -----SSCHHHHHHTTEEEECCCEEEEETTTTEEEESSSCEEECSEEEECCCEEECCCCSTTTTSTTEECCSSHHHHHHH
T ss_pred             -----CCCHHHHHhCCCEEEEEEEEEEECCCCEEEECCCCEEECCEEEEeeCCCccCCCCCCCCCCcEEEECCHHHHHHH
Confidence                 01124456679999886666654  46777765 689999999999999998 8988   4455   44555443


Q ss_pred             c---CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCc-cCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCC
Q psy14461        238 G---AWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLK-HFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFD  311 (535)
Q Consensus       238 ~---~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~-~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~  311 (535)
                      .   ..+++++|||+|++|+|+|..|++.|.+|+++++ +.+++ .+++++.+.+.+.+++.||++ +++.|++++.+ +
T Consensus       136 ~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~-~  214 (404)
T 3fg2_P          136 RQRMPDKKHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVMARVVTPEISSYFHDRHSGAGIRMHYGVRATEIAAE-G  214 (404)
T ss_dssp             HHHGGGCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEEE-T
T ss_pred             HHHhhcCCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcchhhccCHHHHHHHHHHHHhCCcEEEECCEEEEEEec-C
Confidence            2   3578999999999999999999999999999999 88886 589999999999999999999 99999999876 3


Q ss_pred             CcE-EEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCC----
Q psy14461        312 GMK-GVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKP----  386 (535)
Q Consensus       312 ~~~-~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~----  386 (535)
                      +++ .|++   .+|+  ++++|.|++|+|++|+++++  +.+|++.+ +| |.||++++|+.|+|||+|||+. .+    
T Consensus       215 ~~v~~V~~---~dG~--~i~aD~Vv~a~G~~p~~~l~--~~~gl~~~-~G-i~vd~~~~t~~~~iya~GD~a~-~~~~~~  284 (404)
T 3fg2_P          215 DRVTGVVL---SDGN--TLPCDLVVVGVGVIPNVEIA--AAAGLPTA-AG-IIVDQQLLTSDPHISAIGDCAL-FESVRF  284 (404)
T ss_dssp             TEEEEEEE---TTSC--EEECSEEEECCCEEECCHHH--HHTTCCBS-SS-EEECTTSBCSSTTEEECGGGEE-EEETTT
T ss_pred             CcEEEEEe---CCCC--EEEcCEEEECcCCccCHHHH--HhCCCCCC-CC-EEECCCcccCCCCEEEeeccee-ecCccC
Confidence            444 4666   3787  89999999999999999876  77888877 56 9999999999999999999983 22    


Q ss_pred             ------CcHHHHHHHHHHHHHHHhCCCCCCCCCCCCc--EEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccc
Q psy14461        387 ------NNASMAAISARLIIERLYGMQDQLMDYSFLP--VVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNL  458 (535)
Q Consensus       387 ------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p--~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~  458 (535)
                            ..++.|..||++||+||+|...   .|..+|  |+.+++..+.++|++..      .  +-.+...+       
T Consensus       285 g~~~~~~~~~~A~~qg~~aa~~i~g~~~---~~~~~p~~~~~~~~~~~~~~G~~~~------~--~~~~~~~~-------  346 (404)
T 3fg2_P          285 GETMRVESVQNATDQARCVAARLTGDAK---PYDGYPWFWSDQGDDKLQIVGLTAG------F--DQVVIRGS-------  346 (404)
T ss_dssp             TEEECCCSHHHHHHHHHHHHHHTTTCCC---CCCCCCEEEEEETTEEEEEEECCTT------C--CEEEEEEE-------
T ss_pred             CceeeehHHHHHHHHHHHHHHHhCCCCC---CCCCCCceEeEECCcEEEEEeCCCC------C--CEEEEEec-------
Confidence                  2478999999999999998653   355666  67788999999999742      1  21121110       


Q ss_pred             cCCCCCcchhhhhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCC--HHHHc
Q psy14461        459 LDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLT--KAELD  533 (535)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t--~~~l~  533 (535)
                        +                        ....|.|+++.  +++|+|+..+|..  .....+..+|..+..  .++|.
T Consensus       347 --~------------------------~~~~~~~~~~~--~~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~  393 (404)
T 3fg2_P          347 --V------------------------AERSFSAFCYK--AGKLIGIESVNRA--ADHVFGRKILPLDKSVTPEQAA  393 (404)
T ss_dssp             --T------------------------TTTEEEEEEEE--TTEEEEEEEESCH--HHHHHHHHHTTTTCCCCHHHHH
T ss_pred             --C------------------------CCCcEEEEEEE--CCEEEEEEEeCCH--HHHHHHHHHHHcCCCCCHHHhc
Confidence              1                        13569999985  5899999999973  444556667776654  34554

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=100.00  E-value=2.8e-35  Score=296.39  Aligned_cols=288  Identities=14%  Similarity=0.065  Sum_probs=203.4

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHH
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRF  167 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  167 (535)
                      .+||+|||+||||+++|+++...+.+|+|||++...+...++....    ...+.+++++    ...+++.++..+..  
T Consensus         4 ~yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~~~gg~~~~G~~~~----~~~i~~~~g~----~~~i~~~~l~~~~~--   73 (314)
T 4a5l_A            4 IHDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFMAGGVAAGGQLTT----TTIIENFPGF----PNGIDGNELMMNMR--   73 (314)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSGGGCCTTCGGGG----SSEECCSTTC----TTCEEHHHHHHHHH--
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcccCCCcCC----hHHhhhccCC----cccCCHHHHHHHHH--
Confidence            4799999999999999999988999999999986432222221111    0011112222    11234444444333  


Q ss_pred             HHHHHHHHHHHHHhcCcEEEEeEEEEec----CCEEEEce-eEEEcceEEEeeCceecC-CCCC-C-----ceechhhHH
Q psy14461        168 CIRAKNDSMRELKALGIDIVRTAAAFTN----PHTIKLSN-RSVTGFNFLLAVERRCLP-EPRN-S-----ALISADDLF  235 (535)
Q Consensus       168 ~~~~~~~~~~~~~~~gV~~~~g~~~~~~----~~~v~~~~-~~~~~d~lViATGs~p~~-~i~G-~-----~v~~~~~~~  235 (535)
                               ..++..++++...++....    ...+...+ .++.||+||||||++|+. ++|| +     .+.......
T Consensus        74 ---------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~liiATG~~~~~~~ipG~~~~~~~~~~~~~~~~  144 (314)
T 4a5l_A           74 ---------TQSEKYGTTIITETIDHVDFSTQPFKLFTEEGKEVLTKSVIIATGATAKRMHVPGEDKYWQNGVSACAICD  144 (314)
T ss_dssp             ---------HHHHHTTCEEECCCEEEEECSSSSEEEEETTCCEEEEEEEEECCCEEECCCCCTTHHHHBTTTEESCHHHH
T ss_pred             ---------HHHhhcCcEEEEeEEEEeecCCCceEEEECCCeEEEEeEEEEcccccccccCCCccccccccceeeehhhh
Confidence                     4566678887766654422    22333433 789999999999999999 9999 1     233333332


Q ss_pred             hcc--CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCC
Q psy14461        236 RLG--AWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFD  311 (535)
Q Consensus       236 ~~~--~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~  311 (535)
                      ...  ..+++++|||||++|+|+|..|+++|.+||++++ +.+..  .++.   ..+.+...++.. ....+.++....+
T Consensus       145 ~~~~~~~~~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~  219 (314)
T 4a5l_A          145 GAVPIFRNKVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDAFRA--SKTM---QERVLNHPKIEVIWNSELVELEGDGD  219 (314)
T ss_dssp             TTSGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCS--CHHH---HHHHHTCTTEEEECSEEEEEEEESSS
T ss_pred             hhhhhcCCCeEEEECCChHHHHHHHHHHHhCCeeeeecccccccc--cchh---hhhhhcccceeeEeeeeeEEEEeeee
Confidence            222  3478999999999999999999999999999998 65443  2222   234455667888 8888888887532


Q ss_pred             CcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCC-CcHH
Q psy14461        312 GMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKP-NNAS  390 (535)
Q Consensus       312 ~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~-~~~~  390 (535)
                      ....+.+.....++.+++++|.|++++|++||++++.   ..++++++|++ ||+++|||+|||||+|||+ +.+ .+++
T Consensus       220 ~~~~~~~~~~~~~~~~~i~~d~vi~a~G~~pn~~~l~---~~~~~~~~G~i-v~~~~~Ts~pgIyA~GDv~-~~~~~~~~  294 (314)
T 4a5l_A          220 LLNGAKIHNLVSGEYKVVPVAGLFYAIGHSPNSKFLG---GQVKTADDGYI-LTEGPKTSVDGVFACGDVC-DRVYRQAI  294 (314)
T ss_dssp             SEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGT---TSSCBCTTSCB-CCBTTBCSSTTEEECSTTT-CSSCCCHH
T ss_pred             ccceeEEeecccccceeeccccceEecccccChhHhc---ccceEcCCeeE-eCCCCccCCCCEEEEEecc-CCcchHHH
Confidence            2223444432345556899999999999999999873   24778888866 8899999999999999999 554 5889


Q ss_pred             HHHHHHHHHHHHHh
Q psy14461        391 MAAISARLIIERLY  404 (535)
Q Consensus       391 ~A~~~g~~aa~~i~  404 (535)
                      .|+.||++||.++.
T Consensus       295 ~A~~~G~~AA~~~~  308 (314)
T 4a5l_A          295 VAAGSGCMAALSCE  308 (314)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999999885

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=100.00  E-value=1.1e-34  Score=292.20  Aligned_cols=283  Identities=14%  Similarity=0.066  Sum_probs=199.0

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRFC  168 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  168 (535)
                      +||+|||+||||+++|+++...+.+|+|||++. +++. |...       +.+.++|++.     .....++..+..   
T Consensus         7 yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~~~-~gG~-~~~~-------~~i~~~p~~~-----~~~~~~~~~~~~---   69 (312)
T 4gcm_A            7 FDIAIIGAGPAGMTAAVYASRANLKTVMIERGI-PGGQ-MANT-------EEVENFPGFE-----MITGPDLSTKMF---   69 (312)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTGG-GGGC-------SCBCCSTTCS-----SBCHHHHHHHHH---
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEecCC-CCCe-eecc-------cccCCcCCcc-----ccchHHHHHHHH---
Confidence            789999999999999999988999999999864 2211 1000       0001112211     223344433322   


Q ss_pred             HHHHHHHHHHHHhcCcEEEEeEEEE---ecC-CEEEEceeEEEcceEEEeeCceecC-CCCC-C-----ceechhhHHhc
Q psy14461        169 IRAKNDSMRELKALGIDIVRTAAAF---TNP-HTIKLSNRSVTGFNFLLAVERRCLP-EPRN-S-----ALISADDLFRL  237 (535)
Q Consensus       169 ~~~~~~~~~~~~~~gV~~~~g~~~~---~~~-~~v~~~~~~~~~d~lViATGs~p~~-~i~G-~-----~v~~~~~~~~~  237 (535)
                              ....+.++.+..+....   ... +.+..++.++.||+||||||++|+. ++|| +     .+.+.......
T Consensus        70 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~liiAtGs~~~~~~ipG~~~~~~~~v~~~~~~~~~  141 (312)
T 4gcm_A           70 --------EHAKKFGAVYQYGDIKSVEDKGEYKVINFGNKELTAKAVIIATGAEYKKIGVPGEQELGGRGVSYCAVCDGA  141 (312)
T ss_dssp             --------HHHHHTTCEEEECCCCEEEECSSCEEEECSSCEEEEEEEEECCCEEECCCCCTTTTTTBTTTEESCHHHHGG
T ss_pred             --------HHHhhccccccceeeeeeeeeecceeeccCCeEEEeceeEEcccCccCcCCCCChhhhCCccEEeeeccCcc
Confidence                    33445566655543221   112 2333344789999999999999999 9999 2     23333222223


Q ss_pred             cCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcE-
Q psy14461        238 GAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMK-  314 (535)
Q Consensus       238 ~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~-  314 (535)
                      ...+|+|+|||||++|+|+|..|+++|.+||++++ +++++....     ..+.+++.++.. ....+..+... +... 
T Consensus       142 ~~~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  215 (312)
T 4gcm_A          142 FFKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELRAQRIL-----QDRAFKNDKIDFIWSHTLKSINEK-DGKVG  215 (312)
T ss_dssp             GGTTCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCCSCHHH-----HHHHHHCTTEEEECSEEEEEEEEE-TTEEE
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEecccccCcchhH-----HHHHHHhcCcceeeecceeeeecc-ccccc
Confidence            34579999999999999999999999999999999 888764222     234556778888 77777776654 2222 


Q ss_pred             EEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCCCcHHHHHH
Q psy14461        315 GVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAI  394 (535)
Q Consensus       315 ~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~~~~~~A~~  394 (535)
                      ........+++...+++|.|++++|.+|++.++  +..++. +++|+|.||+++|||+|||||+|||+..++++++.|+.
T Consensus       216 ~~~~~~~~~~~~~~~~~d~v~~~~g~~~~~~~~--~~~g~~-~~~G~I~vd~~~~Ts~pgIyA~GDv~~~~~~~~~~A~~  292 (312)
T 4gcm_A          216 SVTLTSTKDGSEETHEADGVFIYIGMKPLTAPF--KDLGIT-NDVGYIVTKDDMTTSVPGIFAAGDVRDKGLRQIVTATG  292 (312)
T ss_dssp             EEEEEETTTCCEEEEECSEEEECSCEEESCGGG--GGGTCB-CTTSCBCCCTTSBCSSTTEEECSTTBSCSCCSHHHHHH
T ss_pred             cceeeeecCCceeEEeeeeEEeecCCCcCchhH--Hhccee-cCCCeEeeCCCCccCCCCEEEEeecCCCcchHHHHHHH
Confidence            222222235566689999999999999999876  666765 56899999999999999999999999335679999999


Q ss_pred             HHHHHHHHHhC
Q psy14461        395 SARLIIERLYG  405 (535)
Q Consensus       395 ~g~~aa~~i~g  405 (535)
                      ||++||.||..
T Consensus       293 ~G~~AA~~i~~  303 (312)
T 4gcm_A          293 DGSIAAQSAAE  303 (312)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999963

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=100.00  E-value=2.6e-33  Score=283.75  Aligned_cols=284  Identities=12%  Similarity=0.027  Sum_probs=207.6

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHH
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRF  167 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  167 (535)
                      .++|+|||+|++|+.+|+.+...+.+|+|||+.. ++.. +.....   +.    .++++    ...+++.++..+.   
T Consensus         8 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~-~~~~~~---~~----~~~~~----~~~~~~~~~~~~l---   71 (325)
T 2q7v_A            8 DYDVVIIGGGPAGLTAAIYTGRAQLSTLILEKGM-PGGQ-IAWSEE---VE----NFPGF----PEPIAGMELAQRM---   71 (325)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTGG-GGGCSC---BC----CSTTC----SSCBCHHHHHHHH---
T ss_pred             cCCEEEECCCHHHHHHHHHHHHcCCcEEEEeCCC-CCcc-cccccc---cc----cCCCC----CCCCCHHHHHHHH---
Confidence            4789999999999999998888889999999983 3221 100000   00    01111    1122344433332   


Q ss_pred             HHHHHHHHHHHHHhcCcEEEEeEEEEec----C---CEEEEc-eeEEEcceEEEeeCceecC-CCCC-C-----ceechh
Q psy14461        168 CIRAKNDSMRELKALGIDIVRTAAAFTN----P---HTIKLS-NRSVTGFNFLLAVERRCLP-EPRN-S-----ALISAD  232 (535)
Q Consensus       168 ~~~~~~~~~~~~~~~gV~~~~g~~~~~~----~---~~v~~~-~~~~~~d~lViATGs~p~~-~i~G-~-----~v~~~~  232 (535)
                              ...+++.|++++.+++..++    .   .++.+. +.++.||+||+|||++|.. ++|| +     .++...
T Consensus        72 --------~~~~~~~gv~~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~~~~i~g~~~~~~~~~~~~~  143 (325)
T 2q7v_A           72 --------HQQAEKFGAKVEMDEVQGVQHDATSHPYPFTVRGYNGEYRAKAVILATGADPRKLGIPGEDNFWGKGVSTCA  143 (325)
T ss_dssp             --------HHHHHHTTCEEEECCEEEEEECTTSSSCCEEEEESSCEEEEEEEEECCCEEECCCCCTTTTTTBTTTEESCH
T ss_pred             --------HHHHHHcCCEEEeeeEEEEEeccCCCceEEEEECCCCEEEeCEEEECcCCCcCCCCCCChhhccCceEEEec
Confidence                    24566779999887765532    2   245443 3689999999999999988 8888 2     233333


Q ss_pred             hHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeC
Q psy14461        233 DLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSF  310 (535)
Q Consensus       233 ~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~  310 (535)
                      ........+++++|||+|++|+|+|..|++.|.+|+++++ +.+..  ++.+.   .+.+++.||++ ++++++++..+ 
T Consensus       144 ~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--~~~~~---~~l~~~~gv~i~~~~~v~~i~~~-  217 (325)
T 2q7v_A          144 TCDGFFYKGKKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDTLRA--NKVAQ---ARAFANPKMKFIWDTAVEEIQGA-  217 (325)
T ss_dssp             HHHGGGGTTCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCCS--CHHHH---HHHHTCTTEEEECSEEEEEEEES-
T ss_pred             cCCHHHcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCcCCc--chHHH---HHHHhcCCceEecCCceEEEccC-
Confidence            2222334568999999999999999999999999999999 66543  33332   23334569999 99999999874 


Q ss_pred             CCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCC-CCcH
Q psy14461        311 DGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGK-PNNA  389 (535)
Q Consensus       311 ~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~-~~~~  389 (535)
                      +....|++++..+|++.++++|.|++|+|++||++++  +.. ++++++|+|.||++++|+.|+|||+|||+ +. ++++
T Consensus       218 ~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l--~~~-~~~~~~g~i~vd~~~~t~~~~vya~GD~~-~~~~~~~  293 (325)
T 2q7v_A          218 DSVSGVKLRNLKTGEVSELATDGVFIFIGHVPNTAFV--KDT-VSLRDDGYVDVRDEIYTNIPMLFAAGDVS-DYIYRQL  293 (325)
T ss_dssp             SSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGG--TTT-SCBCTTSCBCCBTTTBCSSTTEEECSTTT-CSSCCCH
T ss_pred             CcEEEEEEEECCCCcEEEEEcCEEEEccCCCCChHHH--hhh-cccCCCccEecCCCCccCCCCEEEeeccc-CccHHHH
Confidence            2323566653236766689999999999999999887  555 77888999999999999999999999999 55 6899


Q ss_pred             HHHHHHHHHHHHHHhC
Q psy14461        390 SMAAISARLIIERLYG  405 (535)
Q Consensus       390 ~~A~~~g~~aa~~i~g  405 (535)
                      +.|++||++||.||..
T Consensus       294 ~~A~~~g~~aa~~i~~  309 (325)
T 2q7v_A          294 ATSVGAGTRAAMMTER  309 (325)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999999974

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=100.00  E-value=2.3e-36  Score=319.62  Aligned_cols=320  Identities=17%  Similarity=0.176  Sum_probs=229.2

Q ss_pred             CCCCChhHHHH------------hhhcCCcEEEEeCCCchh--hHHHH----------------HHHHHh----cC----
Q psy14461         42 PSFETPPAYIS------------RLSYENRILIFTHAVLRE--ENARA----------------ERYLNA----RG----   83 (535)
Q Consensus        42 p~~~~l~~~~~------------~~i~~~~v~v~~k~~cp~--~~~~~----------------k~~~~~----~~----   83 (535)
                      |..++++.|+.            .+.++|++..++.+.||+  .|..+                ++.+.+    .+    
T Consensus        35 P~~~~i~~~~~~~~~g~~~~A~~~~~~~n~~p~~~grvCp~~~~Ce~~C~~~~~~~~~v~I~~le~~~~~~~~~~~~~~~  114 (456)
T 2vdc_G           35 PVSNNIPDWLKLTSEGRLEEAYEVSQATNNFPEICGRICPQDRLCEGNCVIEQSTHGAVTIGSVEKYINDTAWDQGWVKP  114 (456)
T ss_dssp             TTCCCHHHHHHHHHHTCHHHHHHHHHHHCSCHHHHHHHCCGGGSGGGGCGGGGSSSCSCCHHHHHHHHHHHHHHHTCCCC
T ss_pred             CCCCcHHHHHHHHHCCCHHHHHHHHHhhCCCCccccccCCCCcchHHhcccCCCCCCCccHHHHHHHHHHHHHHcCCCCC
Confidence            66667777644            456678888888889996  46532                122110    11    


Q ss_pred             ---CcceEEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHH
Q psy14461         84 ---DRFAVLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAA  160 (535)
Q Consensus        84 ---~~~~~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l  160 (535)
                         ....-.+|+|||+|++|+++|..+...+.+|+|||+.+.+++.    ..|  +++..             ..+ .++
T Consensus       115 ~~~~~~~~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~GG~----l~~--gip~~-------------~~~-~~~  174 (456)
T 2vdc_G          115 RTPSRELGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGGL----LVY--GIPGF-------------KLE-KSV  174 (456)
T ss_dssp             CCSCSSCCCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSCSTH----HHH--TSCTT-------------TSC-HHH
T ss_pred             CCCcCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCe----eee--cCCCc-------------cCC-HHH
Confidence               0112367999999999999999888888999999999866432    111  12211             111 122


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEceeEEEcceEEEeeCce-ecC-CCCC---CceechhhHH
Q psy14461        161 TKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAVERR-CLP-EPRN---SALISADDLF  235 (535)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~~~~~~d~lViATGs~-p~~-~i~G---~~v~~~~~~~  235 (535)
                      ..+           ..+.++..||+++.++..   .+++++++..+.||+||||||+. |+. ++||   .++++..+++
T Consensus       175 ~~~-----------~~~~l~~~gv~~~~~~~v---~~~v~~~~~~~~~d~vvlAtG~~~~~~~~ipG~~~~gv~~a~~~l  240 (456)
T 2vdc_G          175 VER-----------RVKLLADAGVIYHPNFEV---GRDASLPELRRKHVAVLVATGVYKARDIKAPGSGLGNIVAALDYL  240 (456)
T ss_dssp             HHH-----------HHHHHHHTTCEEETTCCB---TTTBCHHHHHSSCSEEEECCCCCEECCTTCSCCTTTTEEEHHHHH
T ss_pred             HHH-----------HHHHHHHCCcEEEeCCEe---ccEEEhhHhHhhCCEEEEecCCCCCCCCCCCCCcCCCcEEHHHHH
Confidence            222           235567789998887631   23344444346799999999996 666 8998   5677765554


Q ss_pred             h------c------------cCCCCcEEEECCChHHHHHHHHHHhCCC-cEEEEEc-CcC-CccCcHHHHHHHHHhhhcC
Q psy14461        236 R------L------------GAWPGKTLVLGGSLMAVEIAATLNFLGV-PVTLVYS-RRL-LKHFDQEMVRILLSSLTKA  294 (535)
Q Consensus       236 ~------~------------~~~~k~vvViGgG~~g~e~A~~l~~~g~-~Vtlv~~-~~~-l~~~~~~~~~~~~~~l~~~  294 (535)
                      .      +            ...+++|+|||||++|+|+|..+.+.|. +||++++ +.. +|..+.++     +.++++
T Consensus       241 ~~~~~~~~~~~~~~~~~g~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~~~~p~~~~e~-----~~~~~~  315 (456)
T 2vdc_G          241 TTSNKVSLGDTVEAYENGSLNAAGKHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDRKNMPGSQREV-----AHAEEE  315 (456)
T ss_dssp             HHHHHHHCTTTCSSCCTTCSCCCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCSTTCSSCHHHH-----HHHHHT
T ss_pred             HHhhhhhcccccccccccccccCCCEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCCccCCCCCHHHH-----HHHHHC
Confidence            2      1            1346899999999999999999999998 5999999 665 67655542     446678


Q ss_pred             CeEE-cceEEEEEEEeCCCcEE-EEEec------CC---------CCCceEEEcCEEEEccCCCCCCC--CCCccccCee
Q psy14461        295 GVSI-QCCVIEKVISSFDGMKG-VRGFH------PE---------SKEPFADVFKTVVNAMEKKFDFA--ALNLHHIGVD  355 (535)
Q Consensus       295 gV~i-~~~~v~~i~~~~~~~~~-v~~~~------~~---------~G~~~~~~~D~vi~a~G~~p~~~--~l~l~~~gl~  355 (535)
                      ||++ ++..+++|..+  +++. |++..      ..         +|+++++++|.||+|+|+.|++.  ++  +..+++
T Consensus       316 Gv~~~~~~~~~~i~~~--g~v~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~aD~Vi~A~G~~p~~~~~~l--~~~gl~  391 (456)
T 2vdc_G          316 GVEFIWQAAPEGFTGD--TVVTGVRAVRIHLGVADATGRQTPQVIEGSEFTVQADLVIKALGFEPEDLPNAF--DEPELK  391 (456)
T ss_dssp             TCEEECCSSSCCEEEE--EEEETTEEEEEEEEEEEECTTCCEEEEEEEEEEEECSEEEECSCEECCCHHHHH--HSTTSC
T ss_pred             CCEEEeCCCceEEeCC--CcEEEEEEEEEEecccCCcCCccccccCCcEEEEECCEEEECCCCCCCcchhhc--ccCCee
Confidence            9999 99988888753  3221 22110      01         34456899999999999999976  44  677899


Q ss_pred             ecCCCceEcCCC-CCcCCCCEEEeCCcCCCCCCcHHHHHHHHHHHHHHHhC
Q psy14461        356 IKKKSYVVCNEK-DQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYG  405 (535)
Q Consensus       356 ~~~~G~i~vd~~-~~T~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g  405 (535)
                      ++++|+|.||++ ++|+.|+|||+|||+ .++.++..|+.||+.||.+|..
T Consensus       392 ~~~~G~i~vd~~~~~Ts~~~VfA~GD~~-~g~~~v~~A~~~G~~aA~~i~~  441 (456)
T 2vdc_G          392 VTRWGTLLVDHRTKMTNMDGVFAAGDIV-RGASLVVWAIRDGRDAAEGIHA  441 (456)
T ss_dssp             BCTTSSBCCCTTTCBCSSTTEEECGGGG-SSCCSHHHHHHHHHHHHHHHHH
T ss_pred             ECCCCCEEECCCCCcCCCCCEEEecccc-CCchHHHHHHHHHHHHHHHHHH
Confidence            999999999997 999999999999999 7889999999999999999974

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=100.00  E-value=4.8e-33  Score=279.74  Aligned_cols=283  Identities=14%  Similarity=0.046  Sum_probs=207.5

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCC-eEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQR-RDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRF  167 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~-~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  167 (535)
                      ++|+|||+|++|+.+|+.+...+. +|+|||++. ++..    ......+.    .++++    ...++...+..+..  
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~~-~gg~----~~~~~~~~----~~~~~----~~~~~~~~~~~~l~--   66 (311)
T 2q0l_A            2 IDCAIIGGGPAGLSAGLYATRGGVKNAVLFEKGM-PGGQ----ITGSSEIE----NYPGV----KEVVSGLDFMQPWQ--   66 (311)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCSSEEEECSSS-TTCG----GGGCSCBC----CSTTC----CSCBCHHHHHHHHH--
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCCcEEEEcCCC-CCcc----cccccccc----cCCCC----cccCCHHHHHHHHH--
Confidence            589999999999999998888888 999999963 2111    10000000    01111    11234444444332  


Q ss_pred             HHHHHHHHHHHHHhcCcEEEEeEEEEec--CC--EEEEce-eEEEcceEEEeeCceecC-CCCC-C-----ceechhhHH
Q psy14461        168 CIRAKNDSMRELKALGIDIVRTAAAFTN--PH--TIKLSN-RSVTGFNFLLAVERRCLP-EPRN-S-----ALISADDLF  235 (535)
Q Consensus       168 ~~~~~~~~~~~~~~~gV~~~~g~~~~~~--~~--~v~~~~-~~~~~d~lViATGs~p~~-~i~G-~-----~v~~~~~~~  235 (535)
                               ..+++.+++++.+++..++  .+  ++.+.+ .++.||+||+|||++|.. ++|| +     .+++.....
T Consensus        67 ---------~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~~~~~~g~~~~~~~~~~~~~~~~  137 (311)
T 2q0l_A           67 ---------EQCFRFGLKHEMTAVQRVSKKDSHFVILAEDGKTFEAKSVIIATGGSPKRTGIKGESEYWGKGVSTCATCD  137 (311)
T ss_dssp             ---------HHHHTTSCEEECSCEEEEEEETTEEEEEETTSCEEEEEEEEECCCEEECCCCCBTHHHHBTTTEESCHHHH
T ss_pred             ---------HHHHHcCCEEEEEEEEEEEEcCCEEEEEEcCCCEEECCEEEECCCCCCCCCCCCChhhccCCcEEEeecCC
Confidence                     4456678998876655432  34  444433 679999999999999988 8888 2     244433333


Q ss_pred             hccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhh-hcCCeEE-cceEEEEEEEeCCC
Q psy14461        236 RLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSL-TKAGVSI-QCCVIEKVISSFDG  312 (535)
Q Consensus       236 ~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l-~~~gV~i-~~~~v~~i~~~~~~  312 (535)
                      .....+++|+|||+|++|+|+|..|++.|.+|+++++ +.+.  .++++.    +.+ ++.||++ +++.++++..+ ++
T Consensus       138 ~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~--~~~~~~----~~l~~~~gv~v~~~~~v~~i~~~-~~  210 (311)
T 2q0l_A          138 GFFYKNKEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGFR--CAPITL----EHAKNNDKIEFLTPYVVEEIKGD-AS  210 (311)
T ss_dssp             GGGGTTSEEEEECCSHHHHHHHHHHHTTSSEEEEECSSSSCC--SCHHHH----HHHHTCTTEEEETTEEEEEEEEE-TT
T ss_pred             hhhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCccC--CCHHHH----HHHhhCCCeEEEeCCEEEEEECC-CC
Confidence            3334579999999999999999999999999999999 6653  344433    334 3579999 99999999875 34


Q ss_pred             cE-EEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCcccc----CeeecCCCceEcCCCCCcCCCCEEEeCCcCCCC-C
Q psy14461        313 MK-GVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHI----GVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGK-P  386 (535)
Q Consensus       313 ~~-~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~----gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~-~  386 (535)
                      ++ .|++++..+|++.++++|.|++|+|++|+++++  +..    +++++++|+|.||++++|+.|+|||+|||+ +. +
T Consensus       211 ~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l--~~~g~~~~l~~~~~g~i~vd~~~~t~~~~vya~GD~~-~~~~  287 (311)
T 2q0l_A          211 GVSSLSIKNTATNEKRELVVPGFFIFVGYDVNNAVL--KQEDNSMLCKCDEYGSIVVDFSMKTNVQGLFAAGDIR-IFAP  287 (311)
T ss_dssp             EEEEEEEEETTTCCEEEEECSEEEECSCEEECCGGG--BCTTSCBSSCBCTTSCBCCCTTCBCSSTTEEECSTTB-TTCC
T ss_pred             cEeEEEEEecCCCceEEEecCEEEEEecCccChhhh--hcccccceeEeccCCCEEeCCccccCCCCeEEccccc-Ccch
Confidence            43 466653236766689999999999999999887  455    388888999999999999999999999999 54 7


Q ss_pred             CcHHHHHHHHHHHHHHHhC
Q psy14461        387 NNASMAAISARLIIERLYG  405 (535)
Q Consensus       387 ~~~~~A~~~g~~aa~~i~g  405 (535)
                      ++++.|+.||++||.||..
T Consensus       288 ~~~~~A~~~g~~aa~~i~~  306 (311)
T 2q0l_A          288 KQVVCAASDGATAALSVIS  306 (311)
T ss_dssp             CCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhHHHHHHHHHH
Confidence            8999999999999999964

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=100.00  E-value=2.7e-33  Score=301.74  Aligned_cols=281  Identities=13%  Similarity=0.073  Sum_probs=207.3

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHH
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRF  167 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  167 (535)
                      .++|+|||+|++|+.+|+.+...+.+|+|+|+.  +++.    .....++..    +.+     ....+..++..+    
T Consensus       212 ~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~~--~GG~----~~~~~~~~~----~~~-----~~~~~~~~l~~~----  272 (521)
T 1hyu_A          212 AYDVLIVGSGPAGAAAAVYSARKGIRTGLMGER--FGGQ----VLDTVDIEN----YIS-----VPKTEGQKLAGA----  272 (521)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS--TTGG----GTTCSCBCC----BTT-----BSSBCHHHHHHH----
T ss_pred             cccEEEECCcHHHHHHHHHHHhCCCeEEEEECC--CCCc----ccccccccc----cCC-----CCCCCHHHHHHH----
Confidence            357999999999999999988889999999863  2111    111000110    000     112233333332    


Q ss_pred             HHHHHHHHHHHHHhcCcEEEEe-EEEEec-------CCEEEEce-eEEEcceEEEeeCceecC-CCCC-C-----ceech
Q psy14461        168 CIRAKNDSMRELKALGIDIVRT-AAAFTN-------PHTIKLSN-RSVTGFNFLLAVERRCLP-EPRN-S-----ALISA  231 (535)
Q Consensus       168 ~~~~~~~~~~~~~~~gV~~~~g-~~~~~~-------~~~v~~~~-~~~~~d~lViATGs~p~~-~i~G-~-----~v~~~  231 (535)
                             +...+++.|++++.+ ++..++       ..+|++.+ .++.||+||+|||++|+. ++|| .     .++..
T Consensus       273 -------l~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~~~~~~~ipG~~~~~~~~v~~~  345 (521)
T 1hyu_A          273 -------LKAHVSDYDVDVIDSQSASKLVPAATEGGLHQIETASGAVLKARSIIIATGAKWRNMNVPGEDQYRTKGVTYC  345 (521)
T ss_dssp             -------HHHHHHTSCEEEECSCCEEEEECCSSTTSCEEEEETTSCEEEEEEEEECCCEEECCCCCTTTTTTTTTTEECC
T ss_pred             -------HHHHHHHcCCEEEcCCEEEEEEeccCCCceEEEEECCCCEEEcCEEEECCCCCcCCCCCCChhhhcCceEEEe
Confidence                   235567789999988 666653       23466644 689999999999999988 8888 2     23322


Q ss_pred             hhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhc-CCeEE-cceEEEEEEE
Q psy14461        232 DDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTK-AGVSI-QCCVIEKVIS  308 (535)
Q Consensus       232 ~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~-~gV~i-~~~~v~~i~~  308 (535)
                      .........+++|+|||||++|+|+|..|++.|.+||++++ +.+.+  +    ..+.+.+++ .||++ +++.++++..
T Consensus       346 ~~~~~~~~~~k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l~~--~----~~l~~~l~~~~gV~v~~~~~v~~i~~  419 (521)
T 1hyu_A          346 PHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA--D----QVLQDKVRSLKNVDIILNAQTTEVKG  419 (521)
T ss_dssp             TTCCGGGGBTSEEEEECCSHHHHHHHHHHHHHBSEEEEECSSSSCCS--C----HHHHHHHTTCTTEEEECSEEEEEEEE
T ss_pred             ecCchhhcCCCeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCcccCc--C----HHHHHHHhcCCCcEEEeCCEEEEEEc
Confidence            21111123478999999999999999999999999999999 77653  3    234556666 69999 9999999987


Q ss_pred             eCCCcE-EEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCC-C
Q psy14461        309 SFDGMK-GVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGK-P  386 (535)
Q Consensus       309 ~~~~~~-~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~-~  386 (535)
                      + ++++ .+++.+..+|++.++++|.|++++|++||++++  +. .++++++|+|.||++++|+.|+|||+|||+ +. +
T Consensus       420 ~-~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l--~~-~l~~~~~G~I~Vd~~~~ts~p~VfA~GD~~-~~~~  494 (521)
T 1hyu_A          420 D-GSKVVGLEYRDRVSGDIHSVALAGIFVQIGLLPNTHWL--EG-ALERNRMGEIIIDAKCETSVKGVFAAGDCT-TVPY  494 (521)
T ss_dssp             C-SSSEEEEEEEETTTCCEEEEECSEEEECCCEEESCGGG--TT-TSCBCTTSCBCCCTTCBCSSTTEEECSTTB-CCSS
T ss_pred             C-CCcEEEEEEEeCCCCceEEEEcCEEEECcCCCCCchHH--hh-hhccCCCCcEEeCCCCCCCCCCEEEeeccc-CCCc
Confidence            5 3444 466654335766689999999999999999887  43 478888999999999999999999999999 54 4


Q ss_pred             CcHHHHHHHHHHHHHHHhC
Q psy14461        387 NNASMAAISARLIIERLYG  405 (535)
Q Consensus       387 ~~~~~A~~~g~~aa~~i~g  405 (535)
                      +.+..|+.||+.||.+|+.
T Consensus       495 ~~~~~A~~~g~~aa~~i~~  513 (521)
T 1hyu_A          495 KQIIIATGEGAKASLSAFD  513 (521)
T ss_dssp             CCHHHHHHHHHHHHHHHHH
T ss_pred             ceeeehHHhHHHHHHHHHH
Confidence            6899999999999999863

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=100.00  E-value=2.4e-33  Score=282.59  Aligned_cols=281  Identities=11%  Similarity=0.017  Sum_probs=211.1

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccc--cccccccccccchhhcccccccccccccCHHHHHHHHH
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRK--KRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIK  165 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~--~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~  165 (535)
                      .++|+|||+|++|+.+|+.+...+.+|+|||++  ++...  ...++.   .+       ++     ...+..++..+. 
T Consensus        15 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~--~gg~~~~~~~~~~---~~-------~~-----~~~~~~~~~~~~-   76 (323)
T 3f8d_A           15 KFDVIIVGLGPAAYGAALYSARYMLKTLVIGET--PGGQLTEAGIVDD---YL-------GL-----IEIQASDMIKVF-   76 (323)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS--TTGGGGGCCEECC---ST-------TS-----TTEEHHHHHHHH-
T ss_pred             ccCEEEECccHHHHHHHHHHHHCCCcEEEEecc--CCCeecccccccc---cC-------CC-----CCCCHHHHHHHH-
Confidence            478999999999999999988889999999998  22111  011110   11       11     112233333332 


Q ss_pred             HHHHHHHHHHHHHHHhcCcEEEEeEEEEecCC----EEEEce-eEEEcceEEEeeCceecC-CCCC-C-----ceechhh
Q psy14461        166 RFCIRAKNDSMRELKALGIDIVRTAAAFTNPH----TIKLSN-RSVTGFNFLLAVERRCLP-EPRN-S-----ALISADD  233 (535)
Q Consensus       166 ~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~----~v~~~~-~~~~~d~lViATGs~p~~-~i~G-~-----~v~~~~~  233 (535)
                                ...+++.|++++..++..++..    .+.+.+ .++.||+||+|||+.|.. ++|| .     .++....
T Consensus        77 ----------~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~lvlAtG~~~~~~~i~g~~~~~~~~~~~~~~  146 (323)
T 3f8d_A           77 ----------NKHIEKYEVPVLLDIVEKIENRGDEFVVKTKRKGEFKADSVILGIGVKRRKLGVPGEQEFAGRGISYCSV  146 (323)
T ss_dssp             ----------HHHHHTTTCCEEESCEEEEEEC--CEEEEESSSCEEEEEEEEECCCCEECCCCCTTTTTTBTTTEESCHH
T ss_pred             ----------HHHHHHcCCEEEEEEEEEEEecCCEEEEEECCCCEEEcCEEEECcCCCCccCCCCchhhhcCCceEEecc
Confidence                      3556677999888766554322    455554 789999999999999988 8888 2     2323222


Q ss_pred             HHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCC
Q psy14461        234 LFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFD  311 (535)
Q Consensus       234 ~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~  311 (535)
                      .......+++++|||+|++|+|+|..|++.|.+|+++++ +.+++  ++++   +.+.+++.||++ +++.+++++.+ +
T Consensus       147 ~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~~~~--~~~~---~~~~~~~~gv~~~~~~~v~~i~~~-~  220 (323)
T 3f8d_A          147 ADAPLFKNRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFKA--QPIY---VETVKKKPNVEFVLNSVVKEIKGD-K  220 (323)
T ss_dssp             HHGGGGTTCEEEEECCSHHHHHHHHHHHHHSSEEEEECSSSSCCS--CHHH---HHHHHTCTTEEEECSEEEEEEEES-S
T ss_pred             CCHhHcCCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCCCCc--CHHH---HHHHHhCCCcEEEeCCEEEEEecc-C
Confidence            222334578999999999999999999999999999999 77766  3333   333344569999 99999999875 3


Q ss_pred             CcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCC---CCc
Q psy14461        312 GMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGK---PNN  388 (535)
Q Consensus       312 ~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~---~~~  388 (535)
                      +...|++.+..+|++.++++|.|++++|++|+++++  +.++++++++|+|.||++++|+.|+|||+|||+ +.   +.+
T Consensus       221 ~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~--~~~g~~~~~~g~i~vd~~~~t~~~~vya~GD~~-~~~~~~~~  297 (323)
T 3f8d_A          221 VVKQVVVENLKTGEIKELNVNGVFIEIGFDPPTDFA--KSNGIETDTNGYIKVDEWMRTSVPGVFAAGDCT-SAWLGFRQ  297 (323)
T ss_dssp             SEEEEEEEETTTCCEEEEECSEEEECCCEECCHHHH--HHTTCCBCTTSSBCCCTTCBCSSTTEEECSTTB-STTTTCCC
T ss_pred             ceeEEEEEECCCCceEEEEcCEEEEEECCCCChhHH--hhcCeeecCCCcEecCCCceecCCCEEEcceec-CCCCcccc
Confidence            444577764345776689999999999999998876  778899999999999999999999999999999 54   789


Q ss_pred             HHHHHHHHHHHHHHHhC
Q psy14461        389 ASMAAISARLIIERLYG  405 (535)
Q Consensus       389 ~~~A~~~g~~aa~~i~g  405 (535)
                      ++.|+.||+.||.||+.
T Consensus       298 ~~~A~~~g~~aa~~i~~  314 (323)
T 3f8d_A          298 VITAVAQGAVAATSAYR  314 (323)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             eeehhhHHHHHHHHHHH
Confidence            99999999999999963

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=100.00  E-value=9.9e-34  Score=303.22  Aligned_cols=300  Identities=14%  Similarity=0.144  Sum_probs=214.0

Q ss_pred             EEEEEeeCCccHHHHHH--HHHhhCCCeEEEEecCCcccccccccccccccccchh------hcccccccccccccCHHH
Q psy14461         88 VLYLDRIGDEGILLEEE--LKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLE------LEQDSTSALNVTIRNWNA  159 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~a--l~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~------~~~~~~~~~~~~~~~~~~  159 (535)
                      .++++|||+|++|+++|  |++...+.+|+|||++++++|.++.+....  +.+..      ..+.++... ...+.+..
T Consensus        11 ~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~~y~r~~lsk~l--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   87 (493)
T 1m6i_A           11 HVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKEL--WFSDDPNVTKTLRFKQWNGK-ERSIYFQP   87 (493)
T ss_dssp             EEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSGGGGTGG--GCC--CTHHHHCEEECTTSC-EEESBSSC
T ss_pred             cCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCCCCCCCHHh--hcCCccchhhcccccccccc-cccccccc
Confidence            47899999999999999  455555899999999998877665332110  01000      000000000 00000000


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCcEEEEe-EEEEec--CCEEEEce-eEEEcceEEEeeCceecC-CCCC-------Cc
Q psy14461        160 ATKLIKRFCIRAKNDSMRELKALGIDIVRT-AAAFTN--PHTIKLSN-RSVTGFNFLLAVERRCLP-EPRN-------SA  227 (535)
Q Consensus       160 l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g-~~~~~~--~~~v~~~~-~~~~~d~lViATGs~p~~-~i~G-------~~  227 (535)
                      ...+..  ...+     ..+...||+++.+ .+..++  .++|.+.+ .++.||+||||||++|+. +++|       +.
T Consensus        88 ~~~~~~--~~~l-----~~~~~~gv~~~~g~~v~~id~~~~~V~~~~g~~i~yd~lviATGs~p~~~~~~~~~~~~~~~~  160 (493)
T 1m6i_A           88 PSFYVS--AQDL-----PHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSR  160 (493)
T ss_dssp             GGGSBC--TTTT-----TTSTTCEEEEEETCCEEEEEGGGTEEEETTSCEEEEEEEEECCCEEECCCHHHHTSCHHHHHT
T ss_pred             hHhhcc--hhhh-----hhhhcCCeEEEcCCEEEEEECCCCEEEECCCCEEECCEEEECCCCCCCCCCCcccccccccCc
Confidence            000000  0000     0123468999998 454443  67888864 679999999999999987 5543       12


Q ss_pred             e---echhhHHhcc---CCCCcEEEECCChHHHHHHHHHHh----CCCcEEEEEc-CcCCc-cCcHHHHHHHHHhhhcCC
Q psy14461        228 L---ISADDLFRLG---AWPGKTLVLGGSLMAVEIAATLNF----LGVPVTLVYS-RRLLK-HFDQEMVRILLSSLTKAG  295 (535)
Q Consensus       228 v---~~~~~~~~~~---~~~k~vvViGgG~~g~e~A~~l~~----~g~~Vtlv~~-~~~l~-~~~~~~~~~~~~~l~~~g  295 (535)
                      +   .+.+++..+.   ..+++|+|||||++|+|+|..|++    .|.+|+++++ +.+++ .+++++.+.+.+.++++|
T Consensus       161 v~~~~~~~d~~~l~~~~~~~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~~~~~l~~~~~~~~~~~l~~~G  240 (493)
T 1m6i_A          161 TTLFRKIGDFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREG  240 (493)
T ss_dssp             EEECCSHHHHHHHHHHHHHCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHTTT
T ss_pred             eEEEcCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCcccccccCCHHHHHHHHHHHHhcC
Confidence            2   3455655443   247999999999999999999987    4789999998 66554 578899999999999999


Q ss_pred             eEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecC-CCceEcCCCCCcCCC
Q psy14461        296 VSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKK-KSYVVCNEKDQTSVG  373 (535)
Q Consensus       296 V~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~-~G~i~vd~~~~T~~~  373 (535)
                      |++ +++.|++++.+ ++.+.|++   .+|+  ++++|.|++|+|++||++++  +.+|+++++ +|+|.||+++|| .|
T Consensus       241 V~v~~~~~V~~i~~~-~~~~~v~l---~dG~--~i~aD~Vv~a~G~~pn~~l~--~~~gl~~~~~~ggi~Vd~~l~t-~~  311 (493)
T 1m6i_A          241 VKVMPNAIVQSVGVS-SGKLLIKL---KDGR--KVETDHIVAAVGLEPNVELA--KTGGLEIDSDFGGFRVNAELQA-RS  311 (493)
T ss_dssp             CEEECSCCEEEEEEE-TTEEEEEE---TTSC--EEEESEEEECCCEEECCTTH--HHHTCCBCTTTCSEECCTTCEE-ET
T ss_pred             CEEEeCCEEEEEEec-CCeEEEEE---CCCC--EEECCEEEECCCCCccHHHH--HHcCCccccCCCcEEECCCccc-CC
Confidence            999 99999999875 45566776   3777  89999999999999999876  777888875 688999999998 59


Q ss_pred             CEEEeCCcCCCC---------CCcHHHHHHHHHHHHHHHhCCC
Q psy14461        374 NIFAVGGIVHGK---------PNNASMAAISARLIIERLYGMQ  407 (535)
Q Consensus       374 ~IyA~GD~~~~~---------~~~~~~A~~~g~~aa~~i~g~~  407 (535)
                      +|||+|||+ ..         ...+..|..||++||.||+|..
T Consensus       312 ~IyA~GD~a-~~~~~~~g~~~~~~~~~A~~qg~~aa~ni~g~~  353 (493)
T 1m6i_A          312 NIWVAGDAA-CFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAA  353 (493)
T ss_dssp             TEEECGGGE-EEEETTTEEECCCCHHHHHHHHHHHHHHHTSCC
T ss_pred             CeeEeeeeE-eccCcccCccccchHHHHHHHHHHHHHHhcCCC
Confidence            999999998 32         1235589999999999999864

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=100.00  E-value=6.5e-33  Score=280.06  Aligned_cols=283  Identities=10%  Similarity=0.040  Sum_probs=208.0

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHH
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRF  167 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  167 (535)
                      .++|+|||+|++|+.+|+.+...+.+|+|||+.. ++.. +.....   +.    .++++     ..++...+..+.   
T Consensus        16 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~-~~~~~~---~~----~~~~~-----~~~~~~~~~~~~---   78 (319)
T 3cty_A           16 DFDVVIVGAGAAGFSAAVYAARSGFSVAILDKAV-AGGL-TAEAPL---VE----NYLGF-----KSIVGSELAKLF---   78 (319)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSS-TTGG-GGGCSC---BC----CBTTB-----SSBCHHHHHHHH---
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC-CCcc-ccccch---hh----hcCCC-----cccCHHHHHHHH---
Confidence            3689999999999999998888889999999953 2211 100000   00    01111     112333333322   


Q ss_pred             HHHHHHHHHHHHHhcCcEEEEeEEEEec--CC--EEEEceeEEEcceEEEeeCceecC-CCCC-C-----ceechhhHHh
Q psy14461        168 CIRAKNDSMRELKALGIDIVRTAAAFTN--PH--TIKLSNRSVTGFNFLLAVERRCLP-EPRN-S-----ALISADDLFR  236 (535)
Q Consensus       168 ~~~~~~~~~~~~~~~gV~~~~g~~~~~~--~~--~v~~~~~~~~~d~lViATGs~p~~-~i~G-~-----~v~~~~~~~~  236 (535)
                              ...+++.+++++.+++..++  .+  +|.+++.++.||+||+|||++|.. ++|| .     .++.......
T Consensus        79 --------~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~li~AtG~~~~~~~i~g~~~~~~~~~~~~~~~~~  150 (319)
T 3cty_A           79 --------ADHAANYAKIREGVEVRSIKKTQGGFDIETNDDTYHAKYVIITTGTTHKHLGVKGESEYFGKGTSYCSTCDG  150 (319)
T ss_dssp             --------HHHHHTTSEEEETCCEEEEEEETTEEEEEESSSEEEEEEEEECCCEEECCCCCBTTTTTBTTTEESCHHHHG
T ss_pred             --------HHHHHHcCCEEEEeeEEEEEEeCCEEEEEECCCEEEeCEEEECCCCCcccCCCCChHHhCCceEEEEEecch
Confidence                    24556678988776665443  34  354545679999999999999988 8887 2     2333222222


Q ss_pred             ccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcE
Q psy14461        237 LGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMK  314 (535)
Q Consensus       237 ~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~  314 (535)
                      ....+++++|||+|++|+|+|..|++.|.+|+++++ +.+..  ++.    +.+.+++.||++ ++++++++..+ ++++
T Consensus       151 ~~~~~~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~~~~--~~~----l~~~l~~~gv~i~~~~~v~~i~~~-~~~v  223 (319)
T 3cty_A          151 YLFKGKRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPKYMC--ENA----YVQEIKKRNIPYIMNAQVTEIVGD-GKKV  223 (319)
T ss_dssp             GGGBTSEEEEECCSHHHHHHHHHHTTTBSEEEEECSSSSCCS--CHH----HHHHHHHTTCCEECSEEEEEEEES-SSSE
T ss_pred             hhcCCCeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCccCC--CHH----HHHHHhcCCcEEEcCCeEEEEecC-CceE
Confidence            233468999999999999999999999999999999 66542  333    344556789999 99999999875 3423


Q ss_pred             -EEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCC-CCcHHHH
Q psy14461        315 -GVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGK-PNNASMA  392 (535)
Q Consensus       315 -~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~-~~~~~~A  392 (535)
                       .|.+.+..+|+..++++|.|++|+|++||++++  +..+++++++|+|.||++++|+.|+|||+|||+ +. +.+++.|
T Consensus       224 ~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l--~~~gl~~~~~g~i~vd~~~~t~~~~vya~GD~~-~~~~~~~~~A  300 (319)
T 3cty_A          224 TGVKYKDRTTGEEKLIETDGVFIYVGLIPQTSFL--KDSGVKLDERGYIVVDSRQRTSVPGVYAAGDVT-SGNFAQIASA  300 (319)
T ss_dssp             EEEEEEETTTCCEEEECCSEEEECCCEEECCGGG--TTSCCCBCTTSCBCCCTTCBCSSTTEEECSTTB-TTCCCCHHHH
T ss_pred             EEEEEEEcCCCceEEEecCEEEEeeCCccChHHH--hhccccccCCccEeCCCCCccCCCCEEEeeccc-CcchhhHHHH
Confidence             466653236765679999999999999999887  677888898999999999999999999999999 54 5789999


Q ss_pred             HHHHHHHHHHHhC
Q psy14461        393 AISARLIIERLYG  405 (535)
Q Consensus       393 ~~~g~~aa~~i~g  405 (535)
                      +.||++||.||..
T Consensus       301 ~~~g~~aa~~i~~  313 (319)
T 3cty_A          301 VGDGCKAALSLYS  313 (319)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999964

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=100.00  E-value=9.4e-33  Score=277.49  Aligned_cols=277  Identities=14%  Similarity=0.059  Sum_probs=206.2

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccc---cccccccccccchhhcccccccccccccCHHHHHHHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRK---KRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIK  165 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~---~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~  165 (535)
                      ++|+|||+|++|+.+|+.+...+.+|+|+|+..  ++..   .+++.+           ++     ....+...+..+  
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~v~li~~~~--gG~~~~~~~~~~~-----------~~-----~~~~~~~~~~~~--   61 (310)
T 1fl2_A            2 YDVLIVGSGPAGAAAAIYSARKGIRTGLMGERF--GGQILDTVDIENY-----------IS-----VPKTEGQKLAGA--   61 (310)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSST--TGGGGGCCEECCB-----------TT-----BSSEEHHHHHHH--
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC--Cceeccccccccc-----------cC-----cCCCCHHHHHHH--
Confidence            578999999999999999888899999998642  1110   111111           00     111223333322  


Q ss_pred             HHHHHHHHHHHHHHHhcCcEEEEe-EEEEecC-------CEEEEce-eEEEcceEEEeeCceecC-CCCC-C-----cee
Q psy14461        166 RFCIRAKNDSMRELKALGIDIVRT-AAAFTNP-------HTIKLSN-RSVTGFNFLLAVERRCLP-EPRN-S-----ALI  229 (535)
Q Consensus       166 ~~~~~~~~~~~~~~~~~gV~~~~g-~~~~~~~-------~~v~~~~-~~~~~d~lViATGs~p~~-~i~G-~-----~v~  229 (535)
                               +...+++.+++++.+ ++..++.       ..+.+.+ .++.||+||+|||++|.. ++|| +     .++
T Consensus        62 ---------~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~~~~~g~~~~~~~~~~  132 (310)
T 1fl2_A           62 ---------LKVHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKWRNMNVPGEDQYRTKGVT  132 (310)
T ss_dssp             ---------HHHHHHTSCEEEECSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEEECCCCCTTTTTTBTTTEE
T ss_pred             ---------HHHHHHHcCCeEEccCEEEEEEecccCCceEEEEECCCCEEEeCEEEECcCCCcCCCCCCChhhcccceeE
Confidence                     235566789999988 6766532       3455544 589999999999999988 8888 2     244


Q ss_pred             chhhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhc-CCeEE-cceEEEEE
Q psy14461        230 SADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTK-AGVSI-QCCVIEKV  306 (535)
Q Consensus       230 ~~~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~-~gV~i-~~~~v~~i  306 (535)
                      ...........+++|+|||+|++|+|+|..|++.|.+|+++++ +.+.  +++.    +.+.+++ .||++ ++++++++
T Consensus       133 ~~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~--~~~~----~~~~l~~~~gv~v~~~~~v~~i  206 (310)
T 1fl2_A          133 YCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMK--ADQV----LQDKLRSLKNVDIILNAQTTEV  206 (310)
T ss_dssp             SCHHHHGGGGBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCC--SCHH----HHHHHHTCTTEEEESSEEEEEE
T ss_pred             EeccCcHhhcCCCEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCcccC--ccHH----HHHHHhhCCCeEEecCCceEEE
Confidence            4333322233578999999999999999999999999999999 7653  3433    3445555 69999 99999999


Q ss_pred             EEeCCCcE-EEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCC
Q psy14461        307 ISSFDGMK-GVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGK  385 (535)
Q Consensus       307 ~~~~~~~~-~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~  385 (535)
                      ..+ ++++ .|++.+..+|++.++++|.|++|+|++||++++  +.. ++++++|+|.||++++|+.|+|||+|||+ +.
T Consensus       207 ~~~-~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l--~~~-l~~~~~g~i~vd~~~~t~~~~vya~GD~~-~~  281 (310)
T 1fl2_A          207 KGD-GSKVVGLEYRDRVSGDIHNIELAGIFVQIGLLPNTNWL--EGA-VERNRMGEIIIDAKCETNVKGVFAAGDCT-TV  281 (310)
T ss_dssp             EES-SSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGG--TTT-SCBCTTSCBCCCTTCBCSSTTEEECSTTB-SC
T ss_pred             EcC-CCcEEEEEEEECCCCcEEEEEcCEEEEeeCCccCchHH--hcc-ccccCCCcEEcCCCCccCCCCEEEeeccc-CC
Confidence            875 3444 566654335766689999999999999999876  433 77888999999999999999999999999 54


Q ss_pred             -CCcHHHHHHHHHHHHHHHhC
Q psy14461        386 -PNNASMAAISARLIIERLYG  405 (535)
Q Consensus       386 -~~~~~~A~~~g~~aa~~i~g  405 (535)
                       +..+..|+.||+.||.||..
T Consensus       282 ~~~~~~~A~~~g~~aa~~i~~  302 (310)
T 1fl2_A          282 PYKQIIIATGEGAKASLSAFD  302 (310)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHH
T ss_pred             cchhhhhhHhhHHHHHHHHHH
Confidence             46889999999999999974

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=100.00  E-value=3.5e-33  Score=280.59  Aligned_cols=287  Identities=12%  Similarity=0.046  Sum_probs=212.4

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEE-EecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHH
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDEL-QERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKR  166 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~l-ie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  166 (535)
                      .++|+|||+|++|+++|..+...+.+|+| +|++ .+++... ....   +.    .+|++    .......++..+.. 
T Consensus         4 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~~-~~gG~~~-~~~~---~~----~~~~~----~~~~~~~~~~~~~~-   69 (315)
T 3r9u_A            4 MLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEKG-MPGGQIT-SSSE---IE----NYPGV----AQVMDGISFMAPWS-   69 (315)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHTCSCEEEECSS-STTGGGG-GCSC---BC----CSTTC----CSCBCHHHHHHHHH-
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCCeEEEEeCC-CCCceee-eece---ec----cCCCC----CCCCCHHHHHHHHH-
Confidence            36899999999999999988888999999 9994 3322110 0000   10    01111    11234444444433 


Q ss_pred             HHHHHHHHHHHHHHhcCcEEEEeEEEEe-cC--CEEE--Ece-eEEEcceEEEeeCceecC-CCCC-C-----ceechhh
Q psy14461        167 FCIRAKNDSMRELKALGIDIVRTAAAFT-NP--HTIK--LSN-RSVTGFNFLLAVERRCLP-EPRN-S-----ALISADD  233 (535)
Q Consensus       167 ~~~~~~~~~~~~~~~~gV~~~~g~~~~~-~~--~~v~--~~~-~~~~~d~lViATGs~p~~-~i~G-~-----~v~~~~~  233 (535)
                                ..++..+++++.+++..+ +.  +.+.  +.. .++.||+||+|||++|.. ++|| +     .+++...
T Consensus        70 ----------~~~~~~~v~~~~~~v~~i~~~~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~g~~~~~~~~~~~~~~  139 (315)
T 3r9u_A           70 ----------EQCMRFGLKHEMVGVEQILKNSDGSFTIKLEGGKTELAKAVIVCTGSAPKKAGFKGEDEFFGKGVSTCAT  139 (315)
T ss_dssp             ----------HHHTTTCCEEECCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCCEEECCCCCBTTTTTBTTTEESCHH
T ss_pred             ----------HHHHHcCcEEEEEEEEEEecCCCCcEEEEEecCCEEEeCEEEEeeCCCCCCCCCCChhhcCCCeEEeeec
Confidence                      556778999988876655 33  3343  421 289999999999999988 8888 2     2444444


Q ss_pred             HHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCC
Q psy14461        234 LFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFD  311 (535)
Q Consensus       234 ~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~  311 (535)
                      .......+++++|||+|++|+|+|..|++.|.+|+++++ +.+.  .++++   +.+.+++.||++ +++.++++..+ +
T Consensus       140 ~~~~~~~~~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~~~--~~~~~---~~~~~~~~gv~~~~~~~v~~i~~~-~  213 (315)
T 3r9u_A          140 CDGFFYKNKEVAVLGGGDTALEEALYLANICSKIYLIHRRDEFR--AAPST---VEKVKKNEKIELITSASVDEVYGD-K  213 (315)
T ss_dssp             HHGGGGTTSEEEEECCBHHHHHHHHHHHTTSSEEEEECSSSSCB--SCHHH---HHHHHHCTTEEEECSCEEEEEEEE-T
T ss_pred             ccccccCcCEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCCCC--CCHHH---HHHHHhcCCeEEEeCcEEEEEEcC-C
Confidence            444445679999999999999999999999999999999 6653  24433   344456889999 99999999876 3


Q ss_pred             CcE-EEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCc-cccC-eeecCCCceEcCCCCCcCCCCEEEeCCcCCCCCCc
Q psy14461        312 GMK-GVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNL-HHIG-VDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNN  388 (535)
Q Consensus       312 ~~~-~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l-~~~g-l~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~~~  388 (535)
                      +++ .|++. ..+|++.++++|.|++|+|++|++.++.. +.+| ++++++|+|.||++++|+.|+|||+|||+...++.
T Consensus       214 ~~~~~v~~~-~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~~~~g~l~~~~~g~i~vd~~~~t~~~~v~a~GD~~~~~~~~  292 (315)
T 3r9u_A          214 MGVAGVKVK-LKDGSIRDLNVPGIFTFVGLNVRNEILKQDDSKFLCNMEEGGQVSVDLKMQTSVAGLFAAGDLRKDAPKQ  292 (315)
T ss_dssp             TEEEEEEEE-CTTSCEEEECCSCEEECSCEEECCGGGBCTTSCBSSCBCTTSCBCCCTTCBCSSTTEEECGGGBTTCCCC
T ss_pred             CcEEEEEEE-cCCCCeEEeecCeEEEEEcCCCCchhhhcccccceeeecCCCcEEeCCCcccCCCCEEEeecccCCchhh
Confidence            343 35554 24777678999999999999999988743 3365 88898999999999999999999999998336789


Q ss_pred             HHHHHHHHHHHHHHHhC
Q psy14461        389 ASMAAISARLIIERLYG  405 (535)
Q Consensus       389 ~~~A~~~g~~aa~~i~g  405 (535)
                      +..|+.||+.||.||..
T Consensus       293 ~~~A~~~g~~aa~~i~~  309 (315)
T 3r9u_A          293 VICAAGDGAVAALSAMA  309 (315)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             hhhHHhhHHHHHHHHHH
Confidence            99999999999999863

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=100.00  E-value=4.6e-33  Score=282.60  Aligned_cols=289  Identities=15%  Similarity=0.059  Sum_probs=210.8

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHH
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRF  167 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  167 (535)
                      ..+|+|||+|++|+.+|+.+...+.+|+|||+.+......++...+...+.    .++++.    ......++..+    
T Consensus        22 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~~~~~~~~----~~~~~~----~~~~~~~~~~~----   89 (338)
T 3itj_A           22 HNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTTTTEIE----NFPGFP----DGLTGSELMDR----   89 (338)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGSSEEC----CSTTCT----TCEEHHHHHHH----
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCcccccchhhc----ccCCCc----ccCCHHHHHHH----
Confidence            478999999999999999998889999999996522222222222100000    011110    11122333333    


Q ss_pred             HHHHHHHHHHHHHhcCcEEEEeEEEEec--CCEEEE------ceeEEEcceEEEeeCceecC-CCCC-C-----ceechh
Q psy14461        168 CIRAKNDSMRELKALGIDIVRTAAAFTN--PHTIKL------SNRSVTGFNFLLAVERRCLP-EPRN-S-----ALISAD  232 (535)
Q Consensus       168 ~~~~~~~~~~~~~~~gV~~~~g~~~~~~--~~~v~~------~~~~~~~d~lViATGs~p~~-~i~G-~-----~v~~~~  232 (535)
                             +...++..|++++.+++..++  .+.+.+      ++.++.||+||+|||++|.. ++|| +     .+.+..
T Consensus        90 -------~~~~~~~~gv~i~~~~v~~i~~~~~~~~v~~~~~~~~~~~~~d~vvlAtG~~~~~~~~~g~~~~~~~~~~~~~  162 (338)
T 3itj_A           90 -------MREQSTKFGTEIITETVSKVDLSSKPFKLWTEFNEDAEPVTTDAIILATGASAKRMHLPGEETYWQKGISACA  162 (338)
T ss_dssp             -------HHHHHHHTTCEEECSCEEEEECSSSSEEEEETTCSSSCCEEEEEEEECCCEEECCCCCTTHHHHBTTTEESCH
T ss_pred             -------HHHHHHHcCCEEEEeEEEEEEEcCCEEEEEEEecCCCcEEEeCEEEECcCCCcCCCCCCCchhccCccEEEch
Confidence                   235666789999988865543  334444      23679999999999999998 8998 2     333333


Q ss_pred             hHHhc--cCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhc-CCeEE-cceEEEEEE
Q psy14461        233 DLFRL--GAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTK-AGVSI-QCCVIEKVI  307 (535)
Q Consensus       233 ~~~~~--~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~-~gV~i-~~~~v~~i~  307 (535)
                      .....  ...+++++|||+|++|+|+|..|++.|.+|+++++ +.+++      ...+.+.+.+ .||++ +++.+++++
T Consensus       163 ~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~~~~------~~~~~~~l~~~~gv~i~~~~~v~~i~  236 (338)
T 3itj_A          163 VCDGAVPIFRNKPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHLRA------STIMQKRAEKNEKIEILYNTVALEAK  236 (338)
T ss_dssp             HHHTTSGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCS------CHHHHHHHHHCTTEEEECSEEEEEEE
T ss_pred             hcccchhhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccCC------CHHHHHHHHhcCCeEEeecceeEEEE
Confidence            32222  23578999999999999999999999999999999 77655      2233444544 49999 999999998


Q ss_pred             EeCCCcE-EEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEc-CCCCCcCCCCEEEeCCcCCCC
Q psy14461        308 SSFDGMK-GVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVC-NEKDQTSVGNIFAVGGIVHGK  385 (535)
Q Consensus       308 ~~~~~~~-~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~v-d~~~~T~~~~IyA~GD~~~~~  385 (535)
                      .+ ++.+ .|++++..+|+..++++|.|++|+|++|++.++  +. +++++++|+|.+ |++++|+.|+|||+|||+...
T Consensus       237 ~~-~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~--~~-~l~~~~~G~i~v~~~~~~t~~~~vya~GD~~~~~  312 (338)
T 3itj_A          237 GD-GKLLNALRIKNTKKNEETDLPVSGLFYAIGHTPATKIV--AG-QVDTDEAGYIKTVPGSSLTSVPGFFAAGDVQDSK  312 (338)
T ss_dssp             ES-SSSEEEEEEEETTTTEEEEEECSEEEECSCEEECCGGG--BT-TBCBCTTSCBCCCTTSSBCSSTTEEECGGGGCSS
T ss_pred             cc-cCcEEEEEEEECCCCceEEEEeCEEEEEeCCCCChhHh--hC-ceEecCCCcEEEcCcccccCCCCEEEeeccCCCC
Confidence            86 3433 477764335655689999999999999999887  34 888999999995 889999999999999999335


Q ss_pred             CCcHHHHHHHHHHHHHHHhC
Q psy14461        386 PNNASMAAISARLIIERLYG  405 (535)
Q Consensus       386 ~~~~~~A~~~g~~aa~~i~g  405 (535)
                      +..+..|+.||+.||.||..
T Consensus       313 ~~~~~~A~~~g~~aa~~i~~  332 (338)
T 3itj_A          313 YRQAITSAGSGCMAALDAEK  332 (338)
T ss_dssp             CCCHHHHHHHHHHHHHHHHH
T ss_pred             ccceeeehhhhHHHHHHHHH
Confidence            68899999999999999964

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=100.00  E-value=6.6e-34  Score=304.59  Aligned_cols=282  Identities=16%  Similarity=0.095  Sum_probs=211.6

Q ss_pred             EEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHHHH
Q psy14461         90 YLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRFCI  169 (535)
Q Consensus        90 ~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  169 (535)
                      +|+|||+|++|+.+|.++...+.+|||||+++++.|.+ .|+..   ..|.              ++..++..       
T Consensus        44 rVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~~~~~P-lL~~v---a~G~--------------l~~~~i~~-------   98 (502)
T 4g6h_A           44 NVLILGSGWGAISFLKHIDTKKYNVSIISPRSYFLFTP-LLPSA---PVGT--------------VDEKSIIE-------   98 (502)
T ss_dssp             EEEEECSSHHHHHHHHHSCTTTCEEEEEESSSEEECGG-GGGGT---TTTS--------------SCGGGGEE-------
T ss_pred             CEEEECCcHHHHHHHHHhhhCCCcEEEECCCCCccccc-chhHH---hhcc--------------ccHHHhhh-------
Confidence            57999999999999988877789999999999876653 23222   1221              11111110       


Q ss_pred             HHHHHHHHH--HHhcCcEEEEeEEEEec--CCEEEEc---------------------eeEEEcceEEEeeCceecC-CC
Q psy14461        170 RAKNDSMRE--LKALGIDIVRTAAAFTN--PHTIKLS---------------------NRSVTGFNFLLAVERRCLP-EP  223 (535)
Q Consensus       170 ~~~~~~~~~--~~~~gV~~~~g~~~~~~--~~~v~~~---------------------~~~~~~d~lViATGs~p~~-~i  223 (535)
                          .+...  .+..+++++.+++..+|  .++|++.                     +.++.||+||||||++|.. ++
T Consensus        99 ----p~~~~~~~~~~~v~~~~~~v~~ID~~~k~V~l~~~~~~~~~~~~~~~~~~~~~~~~~i~YD~LViAtGs~~~~~~i  174 (502)
T 4g6h_A           99 ----PIVNFALKKKGNVTYYEAEATSINPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGAEPNTFGI  174 (502)
T ss_dssp             ----EHHHHHTTCSSCEEEEEEEEEEEEGGGTEEEEEEEEEEEECSSSCCCCCCCTTCCEEEECSEEEECCCCEECCTTC
T ss_pred             ----hHHHHHHhhcCCeEEEEEEEEEEEhhhCEEEEeecccceeecccccccccccCCceEEeCCEEEEcCCcccccCCc
Confidence                01111  13458999999987764  5677653                     2579999999999999999 99


Q ss_pred             CC--Cc---eechhhHHhcc-------------C-------CCCcEEEECCChHHHHHHHHHHhCC--------------
Q psy14461        224 RN--SA---LISADDLFRLG-------------A-------WPGKTLVLGGSLMAVEIAATLNFLG--------------  264 (535)
Q Consensus       224 ~G--~~---v~~~~~~~~~~-------------~-------~~k~vvViGgG~~g~e~A~~l~~~g--------------  264 (535)
                      ||  ++   +.+.+|+..+.             .       ...+++|||||++|+|+|..|++++              
T Consensus       175 pG~~e~a~~l~t~~dA~~ir~~l~~~~e~a~~~~~~~~~~~~~~~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~  254 (502)
T 4g6h_A          175 PGVTDYGHFLKEIPNSLEIRRTFAANLEKANLLPKGDPERRRLLSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEE  254 (502)
T ss_dssp             TTHHHHCEECSSHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHH
T ss_pred             cCcccccCCCCCHHHHHHHHHHHHHHHHHHhcccccchhhccccceEEECCCcchhhhHHHHHHHHHHHHHhhccccccc
Confidence            99  33   33445543321             0       1247999999999999999887542              


Q ss_pred             CcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCC--ceEEEcCEEEEccCC
Q psy14461        265 VPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKE--PFADVFKTVVNAMEK  340 (535)
Q Consensus       265 ~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~--~~~~~~D~vi~a~G~  340 (535)
                      .+|+++++ +++++.+++++++.+++.|+++||++ ++++|++++.   +.+.+.... .+|+  ++++++|+||||+|.
T Consensus       255 ~~V~lve~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~v~~v~~---~~~~~~~~~-~dg~~~~~~i~ad~viwa~Gv  330 (502)
T 4g6h_A          255 VQIHLVEALPIVLNMFEKKLSSYAQSHLENTSIKVHLRTAVAKVEE---KQLLAKTKH-EDGKITEETIPYGTLIWATGN  330 (502)
T ss_dssp             CEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEETTEEEEEECS---SEEEEEEEC-TTSCEEEEEEECSEEEECCCE
T ss_pred             ceeEEeccccccccCCCHHHHHHHHHHHHhcceeeecCceEEEEeC---CceEEEEEe-cCcccceeeeccCEEEEccCC
Confidence            68999999 99999999999999999999999999 9999999974   333333321 3553  247999999999999


Q ss_pred             CCCCCCCC-ccccCeeecCCCceEcCCCCCc-CCCCEEEeCCcCC-CCCCcHHHHHHHHHHHHHHHh
Q psy14461        341 KFDFAALN-LHHIGVDIKKKSYVVCNEKDQT-SVGNIFAVGGIVH-GKPNNASMAAISARLIIERLY  404 (535)
Q Consensus       341 ~p~~~~l~-l~~~gl~~~~~G~i~vd~~~~T-~~~~IyA~GD~~~-~~~~~~~~A~~~g~~aa~~i~  404 (535)
                      +||..... ....+...+.+|+|.||++||| +.|||||+|||+. +.|++++.|.+||+++|+||.
T Consensus       331 ~~~~~~~~l~~~~~~~~~~~g~I~Vd~~lq~~~~~~IfAiGD~a~~~~p~~a~~A~qqg~~~A~ni~  397 (502)
T 4g6h_A          331 KARPVITDLFKKIPEQNSSKRGLAVNDFLQVKGSNNIFAIGDNAFAGLPPTAQVAHQEAEYLAKNFD  397 (502)
T ss_dssp             ECCHHHHHHHHHSGGGTTCCSSEEBCTTSBBTTCSSEEECGGGEESSSCCCHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHhHHHhccccccCCCceeECCccccCCCCCEEEEEcccCCCCCCchHHHHHHHHHHHHHHH
Confidence            99842110 1344566677899999999998 8999999999984 457899999999999999985

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=100.00  E-value=1.9e-33  Score=282.36  Aligned_cols=275  Identities=11%  Similarity=0.033  Sum_probs=198.0

Q ss_pred             eEEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHH
Q psy14461         87 AVLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKR  166 (535)
Q Consensus        87 ~~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  166 (535)
                      +.+||+|||+||+|++||+++.+.+.+|+|||++..-+......+.+    .            ....+.+.++.+... 
T Consensus         5 ~~yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~~~gg~~~~~~~~~----~------------~~~~~~~~~~~~~~~-   67 (304)
T 4fk1_A            5 KYIDCAVIGAGPAGLNASLVLGRARKQIALFDNNTNRNRVTQNSHGF----I------------TRDGIKPEEFKEIGL-   67 (304)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCGGGGSSCBCCS----T------------TCTTBCHHHHHHHHH-
T ss_pred             CCcCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCeeeeecCCc----c------------CCCCCCHHHHHHHHH-
Confidence            34899999999999999999888899999999975321111111111    0            011234444443222 


Q ss_pred             HHHHHHHHHHHHHHhcCcEEEEeEEEEe---cC--CEEEEce-eEEEcceEEEeeCceecC-CCCC------Cceechhh
Q psy14461        167 FCIRAKNDSMRELKALGIDIVRTAAAFT---NP--HTIKLSN-RSVTGFNFLLAVERRCLP-EPRN------SALISADD  233 (535)
Q Consensus       167 ~~~~~~~~~~~~~~~~gV~~~~g~~~~~---~~--~~v~~~~-~~~~~d~lViATGs~p~~-~i~G------~~v~~~~~  233 (535)
                               .+..+..++.++.+++...   +.  +++.+.+ .++.||+||||||++|+. ++||      ..+++...
T Consensus        68 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~a~~liiATGs~p~~p~i~G~~~~~~~~v~~~~~  138 (304)
T 4fk1_A           68 ---------NEVMKYPSVHYYEKTVVMITKQSTGLFEIVTKDHTKYLAERVLLATGMQEEFPSIPNVREYYGKSLFSCPY  138 (304)
T ss_dssp             ---------HHHTTSTTEEEEECCEEEEEECTTSCEEEEETTCCEEEEEEEEECCCCEEECCSCTTHHHHBTTTEESCHH
T ss_pred             ---------HHHHhcCCEEEEeeEEEEeeecCCCcEEEEECCCCEEEeCEEEEccCCccccccccCccccccceeeeccc
Confidence                     1222334567766665442   22  2455543 789999999999999999 9999      23555554


Q ss_pred             HHhccCCCCcEEEECCCh-HHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeC
Q psy14461        234 LFRLGAWPGKTLVLGGSL-MAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSF  310 (535)
Q Consensus       234 ~~~~~~~~k~vvViGgG~-~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~  310 (535)
                      .......+++++|||||. +++|+|..+++.+.+|+++.+ +.+.        +.+.+.|+++|+.+ .+. ++.+..+ 
T Consensus       139 ~~~~~~~~~~~~VIggG~~~~~e~a~~~~~~~~~v~i~~~~~~~~--------~~~~~~l~~~g~~~~~~~-v~~~~~~-  208 (304)
T 4fk1_A          139 CDGWELKDQPLIIISENEDHTLHMTKLVYNWSTDLVIATNGNELS--------QTIMDELSNKNIPVITES-IRTLQGE-  208 (304)
T ss_dssp             HHSGGGTTSCEEEECCSHHHHHHHHHHHTTTCSCEEEECSSCCCC--------HHHHHHHHTTTCCEECSC-EEEEESG-
T ss_pred             cchhHhcCCceeeecCCCchhhhHHHHHHhCCceEEEEeccccch--------hhhhhhhhccceeEeeee-EEEeecC-
Confidence            444444567888888886 568899999999999999988 5443        23456677889999 654 7777765 


Q ss_pred             CCcE-EEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCCCcH
Q psy14461        311 DGMK-GVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNA  389 (535)
Q Consensus       311 ~~~~-~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~~~~  389 (535)
                      ++.+ .|++   .+|+  ++++|.++++.|.+|++.++  +.+|++++++|+|.||+++|||+|||||+|||+...+.++
T Consensus       209 ~~~~~~v~~---~~g~--~i~~~~~vi~~g~~~~~~~~--~~~g~~~~~~G~I~vd~~~~Ts~p~IyA~GDv~~~~~~~~  281 (304)
T 4fk1_A          209 GGYLKKVEF---HSGL--RIERAGGFIVPTFFRPNQFI--EQLGCELQSNGTFVIDDFGRTSEKNIYLAGETTTQGPSSL  281 (304)
T ss_dssp             GGCCCEEEE---TTSC--EECCCEEEECCEEECSSCHH--HHTTCCCCTTSSSCSSTTCBCSSTTEEECSHHHHTSCCCH
T ss_pred             CCeeeeeec---cccc--eeeecceeeeeccccCChhh--hhcCeEECCCCCEEECcCCccCCCCEEEEeccCCCcchHH
Confidence            3333 4666   3777  89999999988888777765  7889999999999999999999999999999983345678


Q ss_pred             HHHHHHHHHHHHHHh
Q psy14461        390 SMAAISARLIIERLY  404 (535)
Q Consensus       390 ~~A~~~g~~aa~~i~  404 (535)
                      ..|+.||++||.+|.
T Consensus       282 ~~A~~~G~~AA~~i~  296 (304)
T 4fk1_A          282 IIAASQGNKAAIAIN  296 (304)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            899999999999884

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=100.00  E-value=2.1e-35  Score=340.86  Aligned_cols=351  Identities=13%  Similarity=0.078  Sum_probs=248.1

Q ss_pred             CCCCChhHHHH------------hhhcCCcEEEEeCCCchh--hHHHH----------------HHHHHh----cC----
Q psy14461         42 PSFETPPAYIS------------RLSYENRILIFTHAVLRE--ENARA----------------ERYLNA----RG----   83 (535)
Q Consensus        42 p~~~~l~~~~~------------~~i~~~~v~v~~k~~cp~--~~~~~----------------k~~~~~----~~----   83 (535)
                      |..++++.|+.            .+.++|++..++.+.||+  .|..+                +++..+    .+    
T Consensus        92 P~~~~ip~~~~~~~~g~~~~A~~~~~~~n~~p~~~grvCp~~~~Ce~~C~~~~~~~~pv~I~~le~~~~d~~~~~~~~~~  171 (1025)
T 1gte_A           92 PTHLDIKSFITSISNKNYYGAAKMIFSDNPLGLTCGMVCPTSDLCVGGCNLYATEEGSINIGGLQQFASEVFKAMNIPQI  171 (1025)
T ss_dssp             TTCCCHHHHHHHHHTTCHHHHHHHHHHHCTTHHHHHHHCCGGGSGGGGCGGGGSTTCCCCHHHHHHHHHHHHHHHTCCCC
T ss_pred             CCCCCHHHHHHHHHCCCHHHHHHHHHhcCChhHhhcCCCCChhhHHhhCccCCCCCCCccHhHHHHHHHHHHHHhCCccc
Confidence            67777777744            456778888888889995  56532                111111    11    


Q ss_pred             --Cc---------ceEEEEEeeCCccHHHHHHHHHhhCCC-eEEEEecCCcccccc-cccccccccccchhhcccccccc
Q psy14461         84 --DR---------FAVLYLDRIGDEGILLEEELKRQTNQR-RDELQERGSHLSFRK-KRRLYYPVAMSDLELEQDSTSAL  150 (535)
Q Consensus        84 --~~---------~~~~~v~iiG~G~aG~~~al~~~~~~~-~V~lie~~~~~~~~~-~~l~~~~~~i~~~~~~~~~~~~~  150 (535)
                        ..         ..-.+|+|||+|++|+++|..+...+. +|+|||+.+.+++.. .++|.+                 
T Consensus       172 ~~p~~~~~~~~~~~~~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~GG~~~~~ip~~-----------------  234 (1025)
T 1gte_A          172 RNPCLPSQEKMPEAYSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQF-----------------  234 (1025)
T ss_dssp             CCTTSCCGGGSCGGGGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHHTSCTT-----------------
T ss_pred             cCccccccccCCccCCCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCCCccccccCCcc-----------------
Confidence              10         113579999999999999998888888 799999988664431 112221                 


Q ss_pred             cccccCHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEce-eEEEcceEEEeeCc-eecC-CC-CC-
Q psy14461        151 NVTIRNWNAATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSN-RSVTGFNFLLAVER-RCLP-EP-RN-  225 (535)
Q Consensus       151 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~-~~~~~d~lViATGs-~p~~-~i-~G-  225 (535)
                         .... ++.++.           .+++++.||+++.++..  ..+++++++ .++.||+||||||+ +|+. ++ +| 
T Consensus       235 ---~~~~-~~~~~~-----------~~~~~~~gv~~~~~~~v--~~~~v~~~~~~~~~~d~vvlAtGa~~p~~l~~~~G~  297 (1025)
T 1gte_A          235 ---RLPY-DVVNFE-----------IELMKDLGVKIICGKSL--SENEITLNTLKEEGYKAAFIGIGLPEPKTDDIFQGL  297 (1025)
T ss_dssp             ---TSCH-HHHHHH-----------HHHHHTTTCEEEESCCB--STTSBCHHHHHHTTCCEEEECCCCCEECCCGGGTTC
T ss_pred             ---cCCH-HHHHHH-----------HHHHHHCCcEEEcccEe--ccceEEhhhcCccCCCEEEEecCCCCCCCCCCCCCC
Confidence               0111 122221           25677789999998753  224455544 45789999999999 6887 54 44 


Q ss_pred             ---CceechhhHHhc----------------cCCCCcEEEECCChHHHHHHHHHHhCCC-cEEEEEc-C-cCCccCcHHH
Q psy14461        226 ---SALISADDLFRL----------------GAWPGKTLVLGGSLMAVEIAATLNFLGV-PVTLVYS-R-RLLKHFDQEM  283 (535)
Q Consensus       226 ---~~v~~~~~~~~~----------------~~~~k~vvViGgG~~g~e~A~~l~~~g~-~Vtlv~~-~-~~l~~~~~~~  283 (535)
                         ++++++.+++..                ...+++|+|||||++|+|+|..++++|. +||++++ + ..++.+++++
T Consensus       298 ~~~~gv~~a~~~L~~~~~~~~~~~~~~~~~~~~~~~~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~~~~~~~~~~e~  377 (1025)
T 1gte_A          298 TQDQGFYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRAVPEEV  377 (1025)
T ss_dssp             CTTTTEEEHHHHHHHHHHHHCBTTBSCCCCCCCCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGGGCCSCHHHH
T ss_pred             CCCCCEEEhHHHHHHHHhhcccccccccccccccCCcEEEECCChHHHHHHHHHHHcCCCEEEEEEecChhhCCCCHHHH
Confidence               468888877641                2346799999999999999999999996 8999999 6 5667777665


Q ss_pred             HHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEE-EEEec---CCC-------CCceEEEcCEEEEccCCCCCCCCCCccc
Q psy14461        284 VRILLSSLTKAGVSI-QCCVIEKVISSFDGMKG-VRGFH---PES-------KEPFADVFKTVVNAMEKKFDFAALNLHH  351 (535)
Q Consensus       284 ~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~-v~~~~---~~~-------G~~~~~~~D~vi~a~G~~p~~~~l~l~~  351 (535)
                           +.++++||++ ++..++++..+ ++++. |++..   ..+       |+++++++|.||+|+|++|+...+..+.
T Consensus       378 -----~~~~~~Gv~~~~~~~~~~i~~~-~g~v~~v~~~~~~~~~~g~~~~~~g~~~~i~aD~Vi~A~G~~~~~~~l~~~~  451 (1025)
T 1gte_A          378 -----ELAKEEKCEFLPFLSPRKVIVK-GGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGSVLRDPKVKEAL  451 (1025)
T ss_dssp             -----HHHHHTTCEEECSEEEEEEEEE-TTEEEEEEEEEEEECTTSCEEEEEEEEEEEECSEEEECSCEECCCHHHHHHT
T ss_pred             -----HHHHHcCCEEEeCCCceEEEcc-CCeEEEEEEEEeEEcCCCCcccCCCceEEEECCEEEECCCCCCCchhhhhcc
Confidence                 3566789999 99999999865 45442 44421   012       3345799999999999987543331223


Q ss_pred             cCeeecCCCceEcCC-CCCcCCCCEEEeCCcCCCCCCcHHHHHHHHHHHHHHHhCCCC--CCCCCCCCcEEEEcCCceee
Q psy14461        352 IGVDIKKKSYVVCNE-KDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQD--QLMDYSFLPVVVRGDVEFGT  428 (535)
Q Consensus       352 ~gl~~~~~G~i~vd~-~~~T~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g~~~--~~~~~~~~p~~~~~~~~~a~  428 (535)
                      .|++++++|+|.||+ +++|+.|+|||+|||+ +.+.+++.|+.||+.||.+|.+...  ...++..+|...|+.|+++.
T Consensus       452 ~gl~~~~~G~I~vd~~~~~Ts~~~VfA~GD~~-~~~~~~~~A~~~G~~aA~~i~~~L~~~~~~~~~~~~~~p~~~~ev~~  530 (1025)
T 1gte_A          452 SPIKFNRWDLPEVDPETMQTSEPWVFAGGDIV-GMANTTVESVNDGKQASWYIHKYIQAQYGASVSAKPELPLFYTPVDL  530 (1025)
T ss_dssp             TTSCBCTTSSBCCCTTTCBCSSTTEEECSGGG-CSCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSCCBCCCCCGGGG
T ss_pred             cCceECCCCCEEECCCCCccCCCCEEEeCCCC-CCchHHHHHHHHHHHHHHHHHHHHHhccCCCcccCcCcccccccccc
Confidence            588899999999997 8999999999999999 7889999999999999999984210  11234456667777777766


Q ss_pred             ecCCH
Q psy14461        429 VGMSE  433 (535)
Q Consensus       429 vG~te  433 (535)
                      ++++.
T Consensus       531 v~ls~  535 (1025)
T 1gte_A          531 VDISV  535 (1025)
T ss_dssp             CCCCE
T ss_pred             cccee
Confidence            66543

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=100.00  E-value=2.5e-32  Score=275.55  Aligned_cols=285  Identities=13%  Similarity=0.047  Sum_probs=211.3

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHH
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRF  167 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  167 (535)
                      .++|+|||+|++|+.+|+.+...+.+|+|||+.. ++..    ..+    ......++++    ...+....+..+.   
T Consensus         5 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~----~~~----~~~~~~~~~~----~~~~~~~~~~~~~---   68 (320)
T 1trb_A            5 HSKLLILGSGPAGYTAAVYAARANLQPVLITGME-KGGQ----LTT----TTEVENWPGD----PNDLTGPLLMERM---   68 (320)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSS-TTGG----GGG----CSBCCCSTTC----CSSCBHHHHHHHH---
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEccCC-CCce----Eec----chhhhhCCCC----CCCCCHHHHHHHH---
Confidence            4789999999999999999888889999999753 2111    110    0000001111    0112333333332   


Q ss_pred             HHHHHHHHHHHHHhcCcEEEEeEEEEec--CCEEE-E-ceeEEEcceEEEeeCceecC-CCCC-C-----ceechhhHHh
Q psy14461        168 CIRAKNDSMRELKALGIDIVRTAAAFTN--PHTIK-L-SNRSVTGFNFLLAVERRCLP-EPRN-S-----ALISADDLFR  236 (535)
Q Consensus       168 ~~~~~~~~~~~~~~~gV~~~~g~~~~~~--~~~v~-~-~~~~~~~d~lViATGs~p~~-~i~G-~-----~v~~~~~~~~  236 (535)
                              ...++..+++++.+++..++  .+.+. + ++.++.||+||+|||++|.. ++|| +     .+++......
T Consensus        69 --------~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~lv~AtG~~~~~~~~~g~~~~~~~~~~~~~~~~~  140 (320)
T 1trb_A           69 --------HEHATKFETEIIFDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATSDG  140 (320)
T ss_dssp             --------HHHHHHTTCEEECCCEEEEECSSSSEEEEESSCEEEEEEEEECCCEEECCCCCHHHHHTBTTTEESCHHHHG
T ss_pred             --------HHHHHHCCCEEEEeeeeEEEecCCEEEEEeCCCEEEcCEEEECCCCCcCCCCCCChHHhCCceeEecccCCc
Confidence                    24556779999988866654  23333 2 33689999999999999988 8887 2     2333333222


Q ss_pred             ccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcE
Q psy14461        237 LGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMK  314 (535)
Q Consensus       237 ~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~  314 (535)
                      ....+++|+|||+|++|+|+|..|++.|.+|+++++ +.+.  .++.+.+.+.+.+++.||++ +++++++++.+ ++++
T Consensus       141 ~~~~~~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~--~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~-~~~v  217 (320)
T 1trb_A          141 FFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR--AEKILIKRLMDKVENGNIILHTNRTLEEVTGD-QMGV  217 (320)
T ss_dssp             GGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCC--CCHHHHHHHHHHHHTSSEEEECSCEEEEEEEC-SSSE
T ss_pred             cccCCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCccc--cCHHHHHHHHHhcccCCeEEEcCceeEEEEcC-CCce
Confidence            234578999999999999999999999999999999 6654  36778888888899999999 99999999876 3343


Q ss_pred             -EEEEecCCC-CCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCC-----CcCCCCEEEeCCcCCCC-C
Q psy14461        315 -GVRGFHPES-KEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKD-----QTSVGNIFAVGGIVHGK-P  386 (535)
Q Consensus       315 -~v~~~~~~~-G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~-----~T~~~~IyA~GD~~~~~-~  386 (535)
                       .|++.+..+ |+..++++|.|++|+|++|+++++  + .+++++ +|+|.||+++     +|+.|+|||+|||+ +. +
T Consensus       218 ~~v~~~~~~~~g~~~~i~~D~vv~a~G~~p~~~~~--~-~~l~~~-~G~i~vd~~~~~~~~~t~~~~vya~GD~~-~~~~  292 (320)
T 1trb_A          218 TGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIF--E-GQLELE-NGYIKVQSGIHGNATQTSIPGVFAAGDVM-DHIY  292 (320)
T ss_dssp             EEEEEECCTTCCCCEEEECSEEEECSCEEESCGGG--T-TTSCEE-TTEECCCCSSSSCTTBCSSTTEEECGGGG-CSSS
T ss_pred             EEEEEEeccCCCceEEEEcCEEEEEeCCCCChHHh--c-cccccc-CceEEECCCcccccccCCCCCEEEccccc-CCcc
Confidence             366653112 655689999999999999999876  3 467788 8999999987     89999999999999 54 5


Q ss_pred             CcHHHHHHHHHHHHHHHh
Q psy14461        387 NNASMAAISARLIIERLY  404 (535)
Q Consensus       387 ~~~~~A~~~g~~aa~~i~  404 (535)
                      ..+..|+.||+.||.+|.
T Consensus       293 ~~~~~A~~~g~~aa~~i~  310 (320)
T 1trb_A          293 RQAITSAGTGCMAALDAE  310 (320)
T ss_dssp             CCHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhccHHHHHHHHH
Confidence            788999999999999996

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=100.00  E-value=4.5e-33  Score=277.41  Aligned_cols=269  Identities=15%  Similarity=0.099  Sum_probs=203.8

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRFC  168 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  168 (535)
                      ++|+|||+|++|+.+|..+...+.+|+|||+++.....+.....+    .+            ....+..++..+..   
T Consensus         3 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~~~~~~~~~~~----~~------------~~~~~~~~~~~~~~---   63 (297)
T 3fbs_A            3 FDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNRFASHSHGF----LG------------QDGKAPGEIIAEAR---   63 (297)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCGGGGCSCCCSS----TT------------CTTCCHHHHHHHHH---
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCcccccchhhcCC----cC------------CCCCCHHHHHHHHH---
Confidence            578999999999999999888889999999976332111111111    10            11234444444333   


Q ss_pred             HHHHHHHHHHHHhc-CcEEEEeEEEEecC----CEEEEce-eEEEcceEEEeeCceecC-CCCC-C-----ceechhhHH
Q psy14461        169 IRAKNDSMRELKAL-GIDIVRTAAAFTNP----HTIKLSN-RSVTGFNFLLAVERRCLP-EPRN-S-----ALISADDLF  235 (535)
Q Consensus       169 ~~~~~~~~~~~~~~-gV~~~~g~~~~~~~----~~v~~~~-~~~~~d~lViATGs~p~~-~i~G-~-----~v~~~~~~~  235 (535)
                              ..+++. +++++.+++..++.    ..+.+.+ .++.||+||+|||++|.. ++|| .     .+++.....
T Consensus        64 --------~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~  135 (297)
T 3fbs_A           64 --------RQIERYPTIHWVEGRVTDAKGSFGEFIVEIDGGRRETAGRLILAMGVTDELPEIAGLRERWGSAVFHCPYCH  135 (297)
T ss_dssp             --------HHHTTCTTEEEEESCEEEEEEETTEEEEEETTSCEEEEEEEEECCCCEEECCCCBTTGGGBTTTEESCHHHH
T ss_pred             --------HHHHhcCCeEEEEeEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCCCCCCCCCCCchhhcCCeeEEcccCc
Confidence                    445555 79988887766542    2555544 679999999999999988 8888 2     334443222


Q ss_pred             hccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCc
Q psy14461        236 RLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGM  313 (535)
Q Consensus       236 ~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~  313 (535)
                      .....+++++|||+|++|+|+|..|++.| +|+++++ +.   .+++    .+.+.+++.||++ . +.+++++.+  + 
T Consensus       136 ~~~~~~~~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~~~---~~~~----~~~~~l~~~gv~i~~-~~v~~i~~~--~-  203 (297)
T 3fbs_A          136 GYELDQGKIGVIAASPMAIHHALMLPDWG-ETTFFTNGIV---EPDA----DQHALLAARGVRVET-TRIREIAGH--A-  203 (297)
T ss_dssp             TGGGTTCEEEEECCSTTHHHHHHHGGGTS-EEEEECTTTC---CCCH----HHHHHHHHTTCEEEC-SCEEEEETT--E-
T ss_pred             chhhcCCEEEEEecCccHHHHHHHhhhcC-cEEEEECCCC---CCCH----HHHHHHHHCCcEEEc-ceeeeeecC--C-
Confidence            33345799999999999999999999999 9999998 54   2233    4566778889999 6 889998753  2 


Q ss_pred             EEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeec--CCC-ceEcCCCCCcCCCCEEEeCCcCCCCCCcHH
Q psy14461        314 KGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIK--KKS-YVVCNEKDQTSVGNIFAVGGIVHGKPNNAS  390 (535)
Q Consensus       314 ~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~--~~G-~i~vd~~~~T~~~~IyA~GD~~~~~~~~~~  390 (535)
                       .|++.   +|+  ++++|.|++++|++|+++++  +.++++++  ++| ++.||++++|+.|+|||+|||+ +.+++++
T Consensus       204 -~v~~~---~g~--~~~~D~vi~a~G~~p~~~~~--~~~g~~~~~~~~G~~i~vd~~~~t~~~~vya~GD~~-~~~~~~~  274 (297)
T 3fbs_A          204 -DVVLA---DGR--SIALAGLFTQPKLRITVDWI--EKLGCAVEEGPMGSTIVTDPMKQTTARGIFACGDVA-RPAGSVA  274 (297)
T ss_dssp             -EEEET---TSC--EEEESEEEECCEEECCCSCH--HHHTCCEEEETTEEEECCCTTCBCSSTTEEECSGGG-CTTCCHH
T ss_pred             -eEEeC---CCC--EEEEEEEEEccCcccCchhH--HhcCCccccCCCCceEEeCCCCccCCCCEEEEeecC-CchHHHH
Confidence             56663   777  89999999999999999875  77777776  457 8999999999999999999999 7799999


Q ss_pred             HHHHHHHHHHHHHhC
Q psy14461        391 MAAISARLIIERLYG  405 (535)
Q Consensus       391 ~A~~~g~~aa~~i~g  405 (535)
                      .|+.||+.||.||..
T Consensus       275 ~A~~~g~~aa~~i~~  289 (297)
T 3fbs_A          275 LAVGDGAMAGAAAHR  289 (297)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHH
Confidence            999999999999863

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=100.00  E-value=7.3e-32  Score=274.42  Aligned_cols=283  Identities=15%  Similarity=0.055  Sum_probs=204.6

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHH
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRF  167 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  167 (535)
                      .++|+|||+|++|+.+|+.+...+.+|+|||+.. ++..    ..+    ......++++    ...++..++..+.   
T Consensus        14 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~----~~~----~~~~~~~~~~----~~~~~~~~~~~~l---   77 (335)
T 2a87_A           14 VRDVIVIGSGPAGYTAALYAARAQLAPLVFEGTS-FGGA----LMT----TTDVENYPGF----RNGITGPELMDEM---   77 (335)
T ss_dssp             CEEEEEECCHHHHHHHHHHHHHTTCCCEEECCSS-CSCG----GGS----CSCBCCSTTC----TTCBCHHHHHHHH---
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCC-CCCc----eec----cchhhhcCCC----CCCCCHHHHHHHH---
Confidence            3689999999999999998888899999999753 2111    110    0000001111    0112334443333   


Q ss_pred             HHHHHHHHHHHHHhcCcEEEEeEEEEecC---CEE-EEce-eEEEcceEEEeeCceecC-CCCC-C-----ceechhhHH
Q psy14461        168 CIRAKNDSMRELKALGIDIVRTAAAFTNP---HTI-KLSN-RSVTGFNFLLAVERRCLP-EPRN-S-----ALISADDLF  235 (535)
Q Consensus       168 ~~~~~~~~~~~~~~~gV~~~~g~~~~~~~---~~v-~~~~-~~~~~d~lViATGs~p~~-~i~G-~-----~v~~~~~~~  235 (535)
                              ...+++.+++++.+++..++.   .++ .+.+ .++.||+||+|||++|.. ++|| .     .+++.....
T Consensus        78 --------~~~~~~~~v~~~~~~v~~i~~~~~~~v~~~~~g~~~~~d~lviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~  149 (335)
T 2a87_A           78 --------REQALRFGADLRMEDVESVSLHGPLKSVVTADGQTHRARAVILAMGAAARYLQVPGEQELLGRGVSSCATCD  149 (335)
T ss_dssp             --------HHHHHHTTCEEECCCEEEEECSSSSEEEEETTSCEEEEEEEEECCCEEECCCCCTHHHHTBTTTEESCHHHH
T ss_pred             --------HHHHHHcCCEEEEeeEEEEEeCCcEEEEEeCCCCEEEeCEEEECCCCCccCCCCCchHhccCCceEEeeccc
Confidence                    244566799998887655442   356 5543 689999999999999988 8888 2     243333333


Q ss_pred             hccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCc
Q psy14461        236 RLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGM  313 (535)
Q Consensus       236 ~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~  313 (535)
                      .....+++|+|||+|++|+|+|..|++.|.+|+++++ +.+..  .+.+.   .+.+++.||++ +++++++++.+ ++.
T Consensus       150 ~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~~~~--~~~~~---~~~~~~~gV~v~~~~~v~~i~~~-~~~  223 (335)
T 2a87_A          150 GFFFRDQDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDEFRA--SKIML---DRARNNDKIRFLTNHTVVAVDGD-TTV  223 (335)
T ss_dssp             GGGGTTCEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSSCSS--CTTHH---HHHHHCTTEEEECSEEEEEEECS-SSC
T ss_pred             hhhcCCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCcCCc--cHHHH---HHHhccCCcEEEeCceeEEEecC-CcE
Confidence            2234579999999999999999999999999999999 76543  22221   23456789999 99999999865 232


Q ss_pred             EEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCC-CCcCCCCEEEeCCcCCCC-CCcHHH
Q psy14461        314 KGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEK-DQTSVGNIFAVGGIVHGK-PNNASM  391 (535)
Q Consensus       314 ~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~-~~T~~~~IyA~GD~~~~~-~~~~~~  391 (535)
                      ..|.+.+..+|+..++++|.|++|+|++|+++++  + .+++++++|+|.||++ ++|+.|+|||+|||+ +. +..+..
T Consensus       224 ~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~--~-~~l~~~~~G~i~vd~~~~~t~~~~iya~GD~~-~~~~~~~~~  299 (335)
T 2a87_A          224 TGLRVRDTNTGAETTLPVTGVFVAIGHEPRSGLV--R-EAIDVDPDGYVLVQGRTTSTSLPGVFAAGDLV-DRTYRQAVT  299 (335)
T ss_dssp             CEEEEEEETTSCCEEECCSCEEECSCEEECCTTT--B-TTBCBCTTSCBCCSTTSSBCSSTTEEECGGGT-CCSCCCHHH
T ss_pred             eEEEEEEcCCCceEEeecCEEEEccCCccChhHh--h-cccccCCCccEEeCCCCCccCCCCEEEeeecC-CccHHHHHH
Confidence            3455543235655589999999999999999887  3 4688888999999986 689999999999999 54 578899


Q ss_pred             HHHHHHHHHHHHh
Q psy14461        392 AAISARLIIERLY  404 (535)
Q Consensus       392 A~~~g~~aa~~i~  404 (535)
                      |+.||+.||.||.
T Consensus       300 A~~~g~~aA~~i~  312 (335)
T 2a87_A          300 AAGSGCAAAIDAE  312 (335)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHH
Confidence            9999999999996

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=100.00  E-value=1.1e-31  Score=272.44  Aligned_cols=286  Identities=14%  Similarity=0.054  Sum_probs=204.4

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEec----CCcccccccccccccccccchhhcccccccccccccCHHHHHHH
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQER----GSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKL  163 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~----~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~  163 (535)
                      .++|+|||+|++|+.+|+.+...+.+|+|||+    ....+.    ....    ......++++.    ..++...+..+
T Consensus         8 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg----~~~~----~~~~~~~~~~~----~~~~~~~~~~~   75 (333)
T 1vdc_A            8 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGG----QLTT----TTDVENFPGFP----EGILGVELTDK   75 (333)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTC----GGGG----CSEECCSTTCT----TCEEHHHHHHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccCCCc----eeee----ccccccCCCCc----cCCCHHHHHHH
Confidence            47899999999999999988888999999998    222211    1110    00000011110    01223333332


Q ss_pred             HHHHHHHHHHHHHHHHHhcCcEEEEeEEEEec--CC--EEEEceeEEEcceEEEeeCceecC-CCCC-Cc---------e
Q psy14461        164 IKRFCIRAKNDSMRELKALGIDIVRTAAAFTN--PH--TIKLSNRSVTGFNFLLAVERRCLP-EPRN-SA---------L  228 (535)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~--~~--~v~~~~~~~~~d~lViATGs~p~~-~i~G-~~---------v  228 (535)
                      .           ...++..|++++.+++..++  .+  +|.+++.++.||+||+|||++|.. ++|| +.         +
T Consensus        76 l-----------~~~~~~~gv~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~vv~A~G~~~~~~~~~g~~~~~~~~~~~~~  144 (333)
T 1vdc_A           76 F-----------RKQSERFGTTIFTETVTKVDFSSKPFKLFTDSKAILADAVILAIGAVAKRLSFVGSGEVLGGFWNRGI  144 (333)
T ss_dssp             H-----------HHHHHHTTCEEECCCCCEEECSSSSEEEECSSEEEEEEEEEECCCEEECCCCCBTCSSSSSCCBTTTE
T ss_pred             H-----------HHHHHHCCCEEEEeEEEEEEEcCCEEEEEECCcEEEcCEEEECCCCCcCCCCCCCccccccccccCcE
Confidence            2           34556679999888755443  22  455545789999999999999988 8888 22         2


Q ss_pred             echhhHHhcc--CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEE
Q psy14461        229 ISADDLFRLG--AWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIE  304 (535)
Q Consensus       229 ~~~~~~~~~~--~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~  304 (535)
                      ++........  ..+++|+|||+|++|+|+|..|++.|.+|+++++ +.+..  .+.+   ..+.+++.||++ ++++++
T Consensus       145 ~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~--~~~~---~~~~~~~~gv~i~~~~~v~  219 (333)
T 1vdc_A          145 SACAVCDGAAPIFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRA--SKIM---QQRALSNPKIDVIWNSSVV  219 (333)
T ss_dssp             ESCHHHHTTSGGGTTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCS--CHHH---HHHHHTCTTEEEECSEEEE
T ss_pred             EEeccCccchhhcCCCeEEEECCChHHHHHHHHHHhcCCeEEEEecCCcCCc--cHHH---HHHHHhCCCeeEecCCceE
Confidence            2222222222  4578999999999999999999999999999999 66533  2222   224456789999 999999


Q ss_pred             EEEEeCCC-cE-EEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCC-CCcCCCCEEEeCCc
Q psy14461        305 KVISSFDG-MK-GVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEK-DQTSVGNIFAVGGI  381 (535)
Q Consensus       305 ~i~~~~~~-~~-~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~-~~T~~~~IyA~GD~  381 (535)
                      +++.++++ ++ .|++.+..+|+..++++|.|++|+|++|+++++  + .+++++++|+|.||++ ++|+.|+|||+|||
T Consensus       220 ~i~~~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~--~-~~l~~~~~G~i~vd~~~~~t~~~~vya~GD~  296 (333)
T 1vdc_A          220 EAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAIGHEPATKFL--D-GGVELDSDGYVVTKPGTTQTSVPGVFAAGDV  296 (333)
T ss_dssp             EEEESSSSSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGG--T-TSSCBCTTSCBCCCTTSCBCSSTTEEECGGG
T ss_pred             EEeCCCCccceeeEEEEecCCCceEEEecCEEEEEeCCccchHHh--h-ccccccCCCCEEechhhcccCCCCEEEeeec
Confidence            99875221 43 366653235655689999999999999999876  3 4688888999999987 58999999999999


Q ss_pred             CCCC-CCcHHHHHHHHHHHHHHHhC
Q psy14461        382 VHGK-PNNASMAAISARLIIERLYG  405 (535)
Q Consensus       382 ~~~~-~~~~~~A~~~g~~aa~~i~g  405 (535)
                      + +. +..+..|+.||+.||.+|..
T Consensus       297 ~-~~~~~~~~~A~~~g~~aa~~i~~  320 (333)
T 1vdc_A          297 Q-DKKYRQAITAAGTGCMAALDAEH  320 (333)
T ss_dssp             G-CSSCCCHHHHHHHHHHHHHHHHH
T ss_pred             c-CCCchhHHHHHHhHHHHHHHHHH
Confidence            9 54 57899999999999999963

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=100.00  E-value=8.9e-32  Score=273.35  Aligned_cols=288  Identities=13%  Similarity=0.056  Sum_probs=210.0

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccc-cccccccccchhhcccccccccccccCHHHHHHHHHH
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKR-RLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKR  166 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~-l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  166 (535)
                      .++|+|||+|++|+.+|+.+...+.+|+|||+++.+++.... .|...  +.    ..++     ....++.++..+.  
T Consensus         5 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~--~~----~~~~-----~~~~~~~~~~~~l--   71 (335)
T 2zbw_A            5 HTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQLTALYPEKY--IY----DVAG-----FPKVYAKDLVKGL--   71 (335)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSCHHHHHTCTTSE--EC----CSTT-----CSSEEHHHHHHHH--
T ss_pred             cCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeeccCCCce--ee----ccCC-----CCCCCHHHHHHHH--
Confidence            468999999999999999888888999999998866433211 11000  00    0001     0112333333322  


Q ss_pred             HHHHHHHHHHHHHHhcCcEEEEe-EEEEec--CCE--EEEce-eEEEcceEEEeeCc---eecC-CCCC-Cc-----eec
Q psy14461        167 FCIRAKNDSMRELKALGIDIVRT-AAAFTN--PHT--IKLSN-RSVTGFNFLLAVER---RCLP-EPRN-SA-----LIS  230 (535)
Q Consensus       167 ~~~~~~~~~~~~~~~~gV~~~~g-~~~~~~--~~~--v~~~~-~~~~~d~lViATGs---~p~~-~i~G-~~-----v~~  230 (535)
                               ...++..+++++.+ ++..++  ...  |.+.+ .++.||+||+|||+   .|.. ++|| +.     ++.
T Consensus        72 ---------~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~p~~~~i~g~~~~~~~~~~~  142 (335)
T 2zbw_A           72 ---------VEQVAPFNPVYSLGERAETLEREGDLFKVTTSQGNAYTAKAVIIAAGVGAFEPRRIGAPGEREFEGRGVYY  142 (335)
T ss_dssp             ---------HHHHGGGCCEEEESCCEEEEEEETTEEEEEETTSCEEEEEEEEECCTTSEEEECCCCCTTTTTTBTTTEES
T ss_pred             ---------HHHHHHcCCEEEeCCEEEEEEECCCEEEEEECCCCEEEeCEEEECCCCCCCCCCCCCCCChhhccCcEEEE
Confidence                     24455668888765 343322  223  44433 57999999999999   6777 7887 21     221


Q ss_pred             -hhhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEE
Q psy14461        231 -ADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVI  307 (535)
Q Consensus       231 -~~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~  307 (535)
                       ..+..  ...+++|+|||+|++|+|+|..|++.|.+|+++++ +.+++  .++..+.+.+.+++.||++ +++.+++++
T Consensus       143 ~~~~~~--~~~~~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~~~~--~~~~~~~l~~~l~~~gv~v~~~~~v~~i~  218 (335)
T 2zbw_A          143 AVKSKA--EFQGKRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQFRA--HEASVKELMKAHEEGRLEVLTPYELRRVE  218 (335)
T ss_dssp             SCSCGG--GGTTCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCCS--CHHHHHHHHHHHHTTSSEEETTEEEEEEE
T ss_pred             ecCchh--hcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCccCc--cHHHHHHHHhccccCCeEEecCCcceeEc
Confidence             11111  12478999999999999999999999999999999 77655  3567788888899999999 999999998


Q ss_pred             EeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCC--CC
Q psy14461        308 SSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVH--GK  385 (535)
Q Consensus       308 ~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~--~~  385 (535)
                      .+ ++...|++....+|+..++++|.|++|+|++|+++++  +.++++++ +|+|.||++++|+.|+|||+|||+.  +.
T Consensus       219 ~~-~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l--~~~~~~~~-~g~i~vd~~~~t~~~~vya~GD~~~~~~~  294 (335)
T 2zbw_A          219 GD-ERVRWAVVFHNQTQEELALEVDAVLILAGYITKLGPL--ANWGLALE-KNKIKVDTTMATSIPGVYACGDIVTYPGK  294 (335)
T ss_dssp             ES-SSEEEEEEEETTTCCEEEEECSEEEECCCEEEECGGG--GGSCCCEE-TTEEECCTTCBCSSTTEEECSTTEECTTC
T ss_pred             cC-CCeeEEEEEECCCCceEEEecCEEEEeecCCCCchHh--hhcceecc-CCeeeeCCCCCCCCCCEEEeccccccCcc
Confidence            74 3333566653236755589999999999999999876  77788877 7899999999999999999999983  24


Q ss_pred             CCcHHHHHHHHHHHHHHHhC
Q psy14461        386 PNNASMAAISARLIIERLYG  405 (535)
Q Consensus       386 ~~~~~~A~~~g~~aa~~i~g  405 (535)
                      +.+++.|..||++||.||.+
T Consensus       295 ~~~~~~A~~~g~~aa~~i~~  314 (335)
T 2zbw_A          295 LPLIVLGFGEAAIAANHAAA  314 (335)
T ss_dssp             CCCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhHHHHHHHHHHHHH
Confidence            67899999999999999974

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=100.00  E-value=8.9e-32  Score=272.41  Aligned_cols=284  Identities=14%  Similarity=0.106  Sum_probs=209.6

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccc-cccccccccchhhcccccccccccccCHHHHHHHHHH
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKR-RLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKR  166 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~-l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  166 (535)
                      ..+|+|||+|++|+.+|+.+...+.+|+|||+++.+++.... .|...  +.    +.+++     ...+..++..+.  
T Consensus         7 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG~~~~~~~~~~--~~----~~~~~-----~~~~~~~~~~~~--   73 (332)
T 3lzw_A            7 VYDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQLSALYPEKY--IY----DVAGF-----PKIRAQELINNL--   73 (332)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHHCTTSE--EC----CSTTC-----SSEEHHHHHHHH--
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceehhcCCCce--Ee----ccCCC-----CCCCHHHHHHHH--
Confidence            468999999999999999888889999999999876432210 11000  00    01111     112233333332  


Q ss_pred             HHHHHHHHHHHHHHhcCcEEEEe-EEEEe--cCC---EEEEceeEEEcceEEEeeCc---eecC-CCCC-Cc-----eec
Q psy14461        167 FCIRAKNDSMRELKALGIDIVRT-AAAFT--NPH---TIKLSNRSVTGFNFLLAVER---RCLP-EPRN-SA-----LIS  230 (535)
Q Consensus       167 ~~~~~~~~~~~~~~~~gV~~~~g-~~~~~--~~~---~v~~~~~~~~~d~lViATGs---~p~~-~i~G-~~-----v~~  230 (535)
                               ...+++.+++++.+ ++..+  +.+   .+.+.+.++.||+||+|||+   .|.. ++|| +.     ++.
T Consensus        74 ---------~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~d~vVlAtG~~~~~p~~~~~~g~~~~~g~~~~~  144 (332)
T 3lzw_A           74 ---------KEQMAKFDQTICLEQAVESVEKQADGVFKLVTNEETHYSKTVIITAGNGAFKPRKLELENAEQYEGKNLHY  144 (332)
T ss_dssp             ---------HHHHTTSCCEEECSCCEEEEEECTTSCEEEEESSEEEEEEEEEECCTTSCCEECCCCCTTGGGGBTTTEES
T ss_pred             ---------HHHHHHhCCcEEccCEEEEEEECCCCcEEEEECCCEEEeCEEEECCCCCcCCCCCCCCCChhhccCceEEE
Confidence                     35566678998864 34433  223   56666666999999999999   8988 8888 21     222


Q ss_pred             hhhHHhccC-CCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEE
Q psy14461        231 ADDLFRLGA-WPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVI  307 (535)
Q Consensus       231 ~~~~~~~~~-~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~  307 (535)
                        .+..... .+++++|||+|.+|+|+|..|++.|.+|+++++ +.+.+ .++.     .+.+++.||++ .++.+++++
T Consensus       145 --~~~~~~~~~~~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~~~~-~~~~-----~~~l~~~gv~~~~~~~v~~i~  216 (332)
T 3lzw_A          145 --FVDDLQKFAGRRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDKFRA-HEHS-----VENLHASKVNVLTPFVPAELI  216 (332)
T ss_dssp             --SCSCGGGGBTCEEEEECSSHHHHHHHHHHTTTBSEEEEECSSSSCSS-CHHH-----HHHHHHSSCEEETTEEEEEEE
T ss_pred             --ecCCHHHcCCCEEEEECCCHhHHHHHHHHHhhCCeEEEEEecCcCCc-cHHH-----HHHHhcCCeEEEeCceeeEEe
Confidence              2222222 368999999999999999999999999999999 76643 2322     23467889999 999999998


Q ss_pred             EeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCC--CC
Q psy14461        308 SSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVH--GK  385 (535)
Q Consensus       308 ~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~--~~  385 (535)
                      .+ ++...|++.+..+|+..++++|.|++|+|++|+++++  +.+++++ ++|+|.||++++|+.|+|||+|||+.  +.
T Consensus       217 ~~-~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~--~~~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~  292 (332)
T 3lzw_A          217 GE-DKIEQLVLEEVKGDRKEILEIDDLIVNYGFVSSLGPI--KNWGLDI-EKNSIVVKSTMETNIEGFFAAGDICTYEGK  292 (332)
T ss_dssp             CS-SSCCEEEEEETTSCCEEEEECSEEEECCCEECCCGGG--GGSSCCE-ETTEEECCTTSBCSSTTEEECGGGEECTTC
T ss_pred             cC-CceEEEEEEecCCCceEEEECCEEEEeeccCCCchHH--hhcCccc-cCCeEEeCCCCceecCCEEEccceecCCCC
Confidence            75 3445677765345555689999999999999999876  7788888 68999999999999999999999984  35


Q ss_pred             CCcHHHHHHHHHHHHHHHhC
Q psy14461        386 PNNASMAAISARLIIERLYG  405 (535)
Q Consensus       386 ~~~~~~A~~~g~~aa~~i~g  405 (535)
                      ++++..|..||+.||.||+.
T Consensus       293 ~~~~~~A~~~g~~aa~~i~~  312 (332)
T 3lzw_A          293 VNLIASGFGEAPTAVNNAKA  312 (332)
T ss_dssp             CCCHHHHHHHHHHHHHHHHH
T ss_pred             cceEeeehhhHHHHHHHHHH
Confidence            78999999999999999974

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=99.98  E-value=4.5e-31  Score=271.20  Aligned_cols=286  Identities=12%  Similarity=0.067  Sum_probs=207.2

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccc-cccccccccchhhcccccccccccccCHHHHHHHHHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKR-RLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRF  167 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~-l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  167 (535)
                      ++|+|||+|++|+.+|+.+...+.+|+|||+.+.+++.... .|...  +.    ..++     ...++..++..+.   
T Consensus        15 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~--~~----~~~~-----~~~~~~~~~~~~l---   80 (360)
T 3ab1_A           15 RDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLAALYPEKH--IY----DVAG-----FPEVPAIDLVESL---   80 (360)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTCTTSE--EC----CSTT-----CSSEEHHHHHHHH---
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCcccccCCCcc--cc----cCCC-----CCCCCHHHHHHHH---
Confidence            68999999999999999888889999999998866432211 11000  00    0011     0112333333322   


Q ss_pred             HHHHHHHHHHHHHhcCcEEEEe-EEEEec--CC---EEEEce-eEEEcceEEEeeCc---eecC-CCCC-C-c-----ee
Q psy14461        168 CIRAKNDSMRELKALGIDIVRT-AAAFTN--PH---TIKLSN-RSVTGFNFLLAVER---RCLP-EPRN-S-A-----LI  229 (535)
Q Consensus       168 ~~~~~~~~~~~~~~~gV~~~~g-~~~~~~--~~---~v~~~~-~~~~~d~lViATGs---~p~~-~i~G-~-~-----v~  229 (535)
                              ...++..+++++.+ ++..++  .+   +|.+.+ .++.||+||+|||+   .|.. ++|| . .     ++
T Consensus        81 --------~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~li~AtG~~~~~~~~~~i~g~~~~~~~~~v~  152 (360)
T 3ab1_A           81 --------WAQAERYNPDVVLNETVTKYTKLDDGTFETRTNTGNVYRSRAVLIAAGLGAFEPRKLPQLGNIDHLTGSSVY  152 (360)
T ss_dssp             --------HHHHHTTCCEEECSCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCTTCSCCBCCCGGGCCCTTTBTTTEE
T ss_pred             --------HHHHHHhCCEEEcCCEEEEEEECCCceEEEEECCCcEEEeeEEEEccCCCcCCCCCCCCCCchhhCcCceEE
Confidence                    24556678888765 343332  22   455543 58999999999999   5555 5665 1 1     22


Q ss_pred             c-hhhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEE
Q psy14461        230 S-ADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKV  306 (535)
Q Consensus       230 ~-~~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i  306 (535)
                      . ..+..  ...+++|+|||+|++|+|+|..|++.|.+|+++++ +.+.+.  ++..+.+.+.+++.||++ .+++++++
T Consensus       153 ~~~~~~~--~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~--~~~~~~l~~~~~~~gv~i~~~~~v~~i  228 (360)
T 3ab1_A          153 YAVKSVE--DFKGKRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQGH--GKTAHEVERARANGTIDVYLETEVASI  228 (360)
T ss_dssp             SSCSCGG--GGTTCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCSSC--SHHHHSSHHHHHHTSEEEESSEEEEEE
T ss_pred             EecCCHH--HcCCCcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCCCCCC--HHHHHHHHHHhhcCceEEEcCcCHHHh
Confidence            1 11111  12478999999999999999999999999999999 766553  355667777788899999 99999999


Q ss_pred             EEeCCCcE-EEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCC--
Q psy14461        307 ISSFDGMK-GVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVH--  383 (535)
Q Consensus       307 ~~~~~~~~-~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~--  383 (535)
                      +.+ ++++ .|++. ..+|++.++++|.|++|+|++|+++++  +..+++++ +|+|.||++++|+.|+|||+|||+.  
T Consensus       229 ~~~-~~~v~~v~~~-~~~g~~~~i~~D~vi~a~G~~p~~~~l--~~~~~~~~-~g~i~vd~~~~t~~~~vya~GD~~~~~  303 (360)
T 3ab1_A          229 EES-NGVLTRVHLR-SSDGSKWTVEADRLLILIGFKSNLGPL--ARWDLELY-ENALVVDSHMKTSVDGLYAAGDIAYYP  303 (360)
T ss_dssp             EEE-TTEEEEEEEE-ETTCCEEEEECSEEEECCCBCCSCGGG--GGSSCCEE-TTEEECCTTSBCSSTTEEECSTTEECT
T ss_pred             ccC-CCceEEEEEE-ecCCCeEEEeCCEEEECCCCCCCHHHH--Hhhccccc-cCeeeecCCCcCCCCCEEEecCccCCC
Confidence            876 3543 45554 136755689999999999999999876  67788877 7899999999999999999999983  


Q ss_pred             CCCCcHHHHHHHHHHHHHHHhC
Q psy14461        384 GKPNNASMAAISARLIIERLYG  405 (535)
Q Consensus       384 ~~~~~~~~A~~~g~~aa~~i~g  405 (535)
                      +.+++++.|..||++||.||.+
T Consensus       304 ~~~~~~~~A~~~g~~aa~~i~~  325 (360)
T 3ab1_A          304 GKLKIIQTGLSEATMAVRHSLS  325 (360)
T ss_dssp             TCCCSHHHHHHHHHHHHHHHHH
T ss_pred             CccceeehhHHHHHHHHHHHHh
Confidence            2467899999999999999975

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=99.97  E-value=1.3e-30  Score=275.19  Aligned_cols=279  Identities=16%  Similarity=0.133  Sum_probs=205.9

Q ss_pred             EEEEeeCCccHHHHHHHHHhh---CCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQT---NQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIK  165 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~---~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~  165 (535)
                      .+|+|||+|++|+.+|..+..   .+.+|+|||+++++.|.+ .++..   ..+              ..+..       
T Consensus         5 ~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~~~~~-~~~~~---~~g--------------~~~~~-------   59 (437)
T 3sx6_A            5 AHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVP-SNPWV---GVG--------------WKERD-------   59 (437)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEEECGG-GHHHH---HHT--------------SSCHH-------
T ss_pred             CcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCCcccC-Ccccc---ccC--------------ccCHH-------
Confidence            478999999999999987766   789999999999765543 22221   111              11111       


Q ss_pred             HHHHHHHHHHHHHHHhcCcEEEEeEEEEecC--CEEEEce-eEEEcceEEEeeCceecC-CCCC-C-------ceechhh
Q psy14461        166 RFCIRAKNDSMRELKALGIDIVRTAAAFTNP--HTIKLSN-RSVTGFNFLLAVERRCLP-EPRN-S-------ALISADD  233 (535)
Q Consensus       166 ~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~--~~v~~~~-~~~~~d~lViATGs~p~~-~i~G-~-------~v~~~~~  233 (535)
                          ++...+...++..||+++.+++..++.  ++|++++ .++.||+||||||++|.. ++|| .       .+++.++
T Consensus        60 ----~~~~~l~~~~~~~gv~~~~~~v~~id~~~~~V~~~~g~~i~~d~lviAtG~~~~~~~ipG~~~~~~~~~~~~~~~~  135 (437)
T 3sx6_A           60 ----DIAFPIRHYVERKGIHFIAQSAEQIDAEAQNITLADGNTVHYDYLMIATGPKLAFENVPGSDPHEGPVQSICTVDH  135 (437)
T ss_dssp             ----HHEEECHHHHHTTTCEEECSCEEEEETTTTEEEETTSCEEECSEEEECCCCEECGGGSTTCSTTTSSEECCSSHHH
T ss_pred             ----HHHHHHHHHHHHCCCEEEEeEEEEEEcCCCEEEECCCCEEECCEEEECCCCCcCcccCCCCCcccCcceecccccH
Confidence                222334466777899999888877653  5788765 679999999999999998 8998 2       2456666


Q ss_pred             HHhccC------CCCcEEEECCChHH------HHHH----HHHHhCCCc-----EEEEEc-CcCC----ccCcHHHHHHH
Q psy14461        234 LFRLGA------WPGKTLVLGGSLMA------VEIA----ATLNFLGVP-----VTLVYS-RRLL----KHFDQEMVRIL  287 (535)
Q Consensus       234 ~~~~~~------~~k~vvViGgG~~g------~e~A----~~l~~~g~~-----Vtlv~~-~~~l----~~~~~~~~~~~  287 (535)
                      +..+.+      .+++++|||+|+.|      +|+|    ..+++.|.+     ||++++ +.+.    +.++ +....+
T Consensus       136 a~~~~~~~~~~~~~~~~vVVGgG~~~g~~G~~~E~a~~la~~l~~~g~~~~~~~Vtlv~~~~~~~~~~l~~~~-~~~~~~  214 (437)
T 3sx6_A          136 AERAFAEYQALLREPGPIVIGAMAGASCFGPAYEYAMIVASDLKKRGMRDKIPSFTFITSEPYIGHLGIQGVG-DSKGIL  214 (437)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEEECTTCCCCHHHHHHHHHHHHHHHHTTCGGGCSCEEEEESSSSTTCTTTTCCT-THHHHH
T ss_pred             HHHHHHHHHHHHhCCCEEEEEcCCCCCcCcHHHHHHHHHHHHHHHcCCcccCcEEEEEcCCccccccccCcch-HHHHHH
Confidence            654421      13567889986543      7777    667788864     999999 7663    3333 477888


Q ss_pred             HHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCC---ceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceE
Q psy14461        288 LSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKE---PFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVV  363 (535)
Q Consensus       288 ~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~---~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~  363 (535)
                      ++.++++||++ +++.+++|+.   +.+.++... .+|+   ..++++|.+++++|++|+....  +..++ .+++|+|.
T Consensus       215 ~~~l~~~gI~~~~~~~v~~v~~---~~v~~~~~~-~~g~~~~~~~i~~D~vv~~~g~~~~~~~~--~~~gl-~~~~G~i~  287 (437)
T 3sx6_A          215 TKGLKEEGIEAYTNCKVTKVED---NKMYVTQVD-EKGETIKEMVLPVKFGMMIPAFKGVPAVA--GVEGL-CNPGGFVL  287 (437)
T ss_dssp             HHHHHHTTCEEECSEEEEEEET---TEEEEEEEC-TTSCEEEEEEEECSEEEEECCEECCHHHH--TSTTT-BCTTSCBC
T ss_pred             HHHHHHCCCEEEcCCEEEEEEC---CeEEEEecc-cCCccccceEEEEeEEEEcCCCcCchhhh--ccccc-cCCCCcEE
Confidence            99999999999 9999999974   334443221 2443   3479999999999998876543  33456 57899999


Q ss_pred             cCCCCCc-CCCCEEEeCCcCCC-----------CCCcHHHHHHHHHHHHHHHh
Q psy14461        364 CNEKDQT-SVGNIFAVGGIVHG-----------KPNNASMAAISARLIIERLY  404 (535)
Q Consensus       364 vd~~~~T-~~~~IyA~GD~~~~-----------~~~~~~~A~~~g~~aa~~i~  404 (535)
                      ||+++|| +.|||||+|||+..           .|++++.|..||++||+||.
T Consensus       288 Vd~~l~t~~~~~Ifa~GD~~~~~~~~~~~~~~~~pk~~~~A~~qg~~aA~ni~  340 (437)
T 3sx6_A          288 VDEHQRSKKYANIFAAGIAIAIPPVETTPVPTGAPKTGYMIESMVSAAVHNIK  340 (437)
T ss_dssp             BCTTSBBSSCTTEEECGGGBCCCCSCCCSSCCCCCCCHHHHHHHHHHHHHHHH
T ss_pred             eChhccCCCCCCEEEEEEEeccCCcCCCcCCCCCCcHHHHHHHHHHHHHHHHH
Confidence            9999999 99999999999841           35789999999999999997

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=99.97  E-value=9.8e-31  Score=272.80  Aligned_cols=303  Identities=12%  Similarity=0.018  Sum_probs=210.2

Q ss_pred             EEEeeCCccHHHHHHH--HHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHH
Q psy14461         90 YLDRIGDEGILLEEEL--KRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRF  167 (535)
Q Consensus        90 ~v~iiG~G~aG~~~al--~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  167 (535)
                      +|+|||+|++|+.+|.  ++...+.+|+|||++++..+. +.++..   +.+.              .+.+++       
T Consensus         4 kVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~-p~~~~v---~~g~--------------~~~~~~-------   58 (401)
T 3vrd_B            4 KVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTC-YMSNEV---IGGD--------------RELASL-------   58 (401)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECS-TTHHHH---HHTS--------------SCGGGG-------
T ss_pred             EEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCc-cCHHHH---hcCC--------------CCHHHH-------
Confidence            4699999999999985  444556799999998865333 222222   1111              011100       


Q ss_pred             HHHHHHHHHHHHHhcCcEEEEeEEEEec--CCEEEEce-eEEEcceEEEeeCceecC-CCCC--Cc--------eechhh
Q psy14461        168 CIRAKNDSMRELKALGIDIVRTAAAFTN--PHTIKLSN-RSVTGFNFLLAVERRCLP-EPRN--SA--------LISADD  233 (535)
Q Consensus       168 ~~~~~~~~~~~~~~~gV~~~~g~~~~~~--~~~v~~~~-~~~~~d~lViATGs~p~~-~i~G--~~--------v~~~~~  233 (535)
                          ...+ +.+...||+++.+++..+|  .+++.+.+ .++.||+||||||+++.. ++||  +.        ..+.++
T Consensus        59 ----~~~~-~~~~~~gv~~i~~~v~~id~~~~~v~~~~g~~i~yd~LviAtG~~~~~~~i~G~~e~~~~~~~~~~~~~~~  133 (401)
T 3vrd_B           59 ----RVGY-DGLRAHGIQVVHDSALGIDPDKKLVKTAGGAEFAYDRCVVAPGIDLLYDKIEGYSEALAAKLPHAWKAGEQ  133 (401)
T ss_dssp             ----EECS-HHHHHTTCEEECSCEEEEETTTTEEEETTSCEEECSEEEECCCEEECGGGSBTCCSGGGGTSCCCSSCSHH
T ss_pred             ----hhCH-HHHHHCCCEEEEeEEEEEEccCcEEEecccceeecceeeeccCCccccCCccCchhhcccCccceeccHHH
Confidence                0011 2244579999999988765  46777765 789999999999999998 8888  11        223344


Q ss_pred             HHhcc----C-CCCcEEEECCCh-----------HHHHHHHHHHhCC--CcEEEEEc-CcCC--ccCcHHHHHHHHHhhh
Q psy14461        234 LFRLG----A-WPGKTLVLGGSL-----------MAVEIAATLNFLG--VPVTLVYS-RRLL--KHFDQEMVRILLSSLT  292 (535)
Q Consensus       234 ~~~~~----~-~~k~vvViGgG~-----------~g~e~A~~l~~~g--~~Vtlv~~-~~~l--~~~~~~~~~~~~~~l~  292 (535)
                      ...+.    . ...+.+|+++|.           .++++|..|++.+  .+|++++. +.+.  +.+++.+.+.+.+.++
T Consensus       134 ~~~~~~~l~~~~~~~~~v~~~~~~~i~~~~a~~e~~~~~a~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~l~  213 (401)
T 3vrd_B          134 TALLRRQLESMDDGGVVIIAPPAPPFRCPPGPYERASQIAHYLKAHKSKSKVIILDNSQTFSKQAQFTKGWERLYGFGTE  213 (401)
T ss_dssp             HHHHHHHHHHSCTTCEEEEECCSSSCBCTTHHHHHHHHHHHHHHHHCTTCEEEEECSSSSCTTHHHHHHHHHHHSCTTST
T ss_pred             HHHHHHHHHhcccCCcEEEecCCccEEeehHHHHHHHHHHHHHHhcCCCCEEEEEcccccccccccccHHHHHHHHHHHH
Confidence            43321    1 123344444332           4567777777765  68999988 6653  4677888888888899


Q ss_pred             cCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCC-CC-
Q psy14461        293 KAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEK-DQ-  369 (535)
Q Consensus       293 ~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~-~~-  369 (535)
                      +.||++ ++.++..++.+ .+...+++   .+|+  ++++|++++++|.+|+. ++  +.+++ .+++|+|.||++ +| 
T Consensus       214 ~~gi~v~~~~~v~~v~~~-~~~~~v~~---~~g~--~i~~D~vi~~~g~~~~~-~~--~~~gl-~~~~G~i~VD~~tl~~  283 (401)
T 3vrd_B          214 NALIEWHPGPDAAVVKTD-TEAMTVET---SFGE--TFKAAVINLIPPQRAGK-IA--QSASL-TNDSGWCPVDIRTFES  283 (401)
T ss_dssp             TCSEEEECTTTTCEEEEE-TTTTEEEE---TTSC--EEECSEEEECCCEEECH-HH--HHTTC-CCTTSSBCBCTTTCBB
T ss_pred             hcCcEEEeCceEEEEEec-ccceEEEc---CCCc--EEEeeEEEEecCcCCch-hH--hhccc-cccCCCEEECCCccee
Confidence            999999 99999888876 34556776   4787  89999999999999984 33  67777 477999999987 55 


Q ss_pred             cCCCCEEEeCCcCCC--CCCcHHHHHHHHHHHHHHHh----CCCCCCCCCCCCcEEEEcCCceeeecCCH
Q psy14461        370 TSVGNIFAVGGIVHG--KPNNASMAAISARLIIERLY----GMQDQLMDYSFLPVVVRGDVEFGTVGMSE  433 (535)
Q Consensus       370 T~~~~IyA~GD~~~~--~~~~~~~A~~~g~~aa~~i~----g~~~~~~~~~~~p~~~~~~~~~a~vG~te  433 (535)
                      |+.|||||+|||+.+  .|++++.|.+||+++|+||+    |+++.++.|....++ +..+..+.+.+++
T Consensus       284 t~~p~VfAiGDva~~~~~pk~a~~A~~qa~v~A~ni~~~l~G~~~~~~~y~~~~~~-~~~~~~~~~~~~~  352 (401)
T 3vrd_B          284 SLQPGIHVIGDACNAAPMPKSAYSANSQAKVAAAAVVALLKGEEPGTPSYLNTCYS-ILAPGYGISIAAV  352 (401)
T ss_dssp             SSSTTEEECGGGBCCTTSCBSHHHHHHHHHHHHHHHHHHHHTCCCCCCCEEEEEEE-EEETTEEEEEEEE
T ss_pred             cCCCCEEEecccccCCCCCchHHHHHHHHHHHHHHHHHHhcCCCCCCcccCCeEEE-EEecCCceEEEEE
Confidence            899999999999842  36799999999999999997    554444444443333 3355566655543

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=99.97  E-value=2.3e-30  Score=270.84  Aligned_cols=272  Identities=11%  Similarity=0.132  Sum_probs=207.4

Q ss_pred             EEEeeCCccHHHHHHHHHhh---CCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHH
Q psy14461         90 YLDRIGDEGILLEEELKRQT---NQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKR  166 (535)
Q Consensus        90 ~v~iiG~G~aG~~~al~~~~---~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  166 (535)
                      +|+|||+|++|+.+|..+..   .+.+|+|||+++.+.+.+. +++.   ..+.              .+..+       
T Consensus         3 ~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~~~~-~~~~---~~~~--------------~~~~~-------   57 (409)
T 3h8l_A            3 KVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPA-LPHV---AIGV--------------RDVDE-------   57 (409)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEECCS-SCCC---CSSC--------------CCCCC-------
T ss_pred             eEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCceeccc-hhhc---ccCC--------------cCHHH-------
Confidence            68999999999999987776   7899999999997755532 2222   1110              00000       


Q ss_pred             HHHHHHHHHHHHHHhcCcEEEEeEEEEec--CCEEEEce-----eEEEcceEEEeeCceecC-CCCC--C---ceechhh
Q psy14461        167 FCIRAKNDSMRELKALGIDIVRTAAAFTN--PHTIKLSN-----RSVTGFNFLLAVERRCLP-EPRN--S---ALISADD  233 (535)
Q Consensus       167 ~~~~~~~~~~~~~~~~gV~~~~g~~~~~~--~~~v~~~~-----~~~~~d~lViATGs~p~~-~i~G--~---~v~~~~~  233 (535)
                          +...+...+++.|++++.+++..++  .++|++.+     .++.||+||+|||++|.. ++||  +   .+++.++
T Consensus        58 ----~~~~~~~~~~~~gv~~~~~~v~~i~~~~~~V~~~~g~~~~~~~~~d~lViAtG~~~~~~~ipG~~~~~~~~~~~~~  133 (409)
T 3h8l_A           58 ----LKVDLSEALPEKGIQFQEGTVEKIDAKSSMVYYTKPDGSMAEEEYDYVIVGIGAHLATELVKGWDKYGYSVCEPEF  133 (409)
T ss_dssp             ----EEEEHHHHTGGGTCEEEECEEEEEETTTTEEEEECTTSCEEEEECSEEEECCCCEECGGGSBTHHHHCEESSSTTH
T ss_pred             ----HHHHHHHHHhhCCeEEEEeeEEEEeCCCCEEEEccCCcccceeeCCEEEECCCCCcCccCCCChhhcCcCcCCHHH
Confidence                1112235566789999999877764  44777754     349999999999999988 8998  2   3445555


Q ss_pred             HHhcc----CCCCcEEEECCCh-------------------------HHHHHH----HHHHhCCC----cEEEEEc-CcC
Q psy14461        234 LFRLG----AWPGKTLVLGGSL-------------------------MAVEIA----ATLNFLGV----PVTLVYS-RRL  275 (535)
Q Consensus       234 ~~~~~----~~~k~vvViGgG~-------------------------~g~e~A----~~l~~~g~----~Vtlv~~-~~~  275 (535)
                      ...+.    ...++++|||+|.                         +++|+|    ..+++.|.    +|+++++ + +
T Consensus       134 ~~~~~~~l~~~~~~~vViG~G~f~~~~~~~~~~p~~~~p~~~~~~~~~~~e~a~~~~~~l~~~g~~~~~~v~~~~~~~-~  212 (409)
T 3h8l_A          134 ATKLREKLESFQGGNIAIGSGPFYQGHNPKPKVPENFVPNADSACEGPVFEMSLMLHGYFKKKGMLDKVHVTVFSPGE-Y  212 (409)
T ss_dssp             HHHHHHHHHHCCSEEEEEEECCBCCCCSSCCBSCTTSSCCCSCSSCHHHHHHHHHHHHHHHTTTCTTTEEEEEECSSS-S
T ss_pred             HHHHHHHHHHhcCCeEEEEecccccCCCccccccccccCCCCcccCCHHHHHHHHHHHHHHHcCCCCCeEEEEEeCCc-c
Confidence            54432    2336778999991                         466766    55667774    8999999 7 7


Q ss_pred             CccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCcccc--
Q psy14461        276 LKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHI--  352 (535)
Q Consensus       276 l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~--  352 (535)
                      ++.+++++.+.+.+.+++.||++ ++++|++++.+     .|+++   +|+  ++++|.+++++|++|+. ++  +.+  
T Consensus       213 l~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~-----~v~~~---~g~--~~~~D~vi~a~G~~~~~-~l--~~~~~  279 (409)
T 3h8l_A          213 LSDLSPNSRKAVASIYNQLGIKLVHNFKIKEIREH-----EIVDE---KGN--TIPADITILLPPYTGNP-AL--KNSTP  279 (409)
T ss_dssp             STTBCHHHHHHHHHHHHHHTCEEECSCCEEEECSS-----EEEET---TSC--EEECSEEEEECCEECCH-HH--HTSCG
T ss_pred             ccccCHHHHHHHHHHHHHCCCEEEcCCceEEECCC-----eEEEC---CCC--EEeeeEEEECCCCCccH-HH--Hhccc
Confidence            88889999999999999999999 99999999743     25663   777  89999999999999985 33  454  


Q ss_pred             CeeecCCCceEcCCCCCc-CCCCEEEeCCcCC-CCCCcHHHHHHHHHHHHHHHhC
Q psy14461        353 GVDIKKKSYVVCNEKDQT-SVGNIFAVGGIVH-GKPNNASMAAISARLIIERLYG  405 (535)
Q Consensus       353 gl~~~~~G~i~vd~~~~T-~~~~IyA~GD~~~-~~~~~~~~A~~~g~~aa~~i~g  405 (535)
                      ++ .+++|+|.||+++|| +.|||||+|||+. +.+++++.|..||++||+||.+
T Consensus       280 ~l-~~~~G~i~vd~~~~~~~~~~vfa~GD~~~~~~~~~~~~A~~q~~~aa~~i~~  333 (409)
T 3h8l_A          280 DL-VDDGGFIPTDLNMVSIKYDNVYAVGDANSMTVPKLGYLAVMTGRIAAQHLAN  333 (409)
T ss_dssp             GG-SCTTSCBCBBTTSBBSSCTTEEECGGGBTTCCSCCHHHHHHHHHHHHHHHHH
T ss_pred             cC-cCCCCCEEeCcccccCCCCCEEEeehhccCCCCcHHHHHHHHHHHHHHHHHH
Confidence            44 367899999999999 9999999999994 3578999999999999999975

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=99.97  E-value=2.4e-30  Score=272.39  Aligned_cols=280  Identities=13%  Similarity=0.069  Sum_probs=198.6

Q ss_pred             EEEeeCCccHHHHHHHHHh--hCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHH
Q psy14461         90 YLDRIGDEGILLEEELKRQ--TNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRF  167 (535)
Q Consensus        90 ~v~iiG~G~aG~~~al~~~--~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  167 (535)
                      +|+|||+|++|+.+|.++.  ..+.+|||||+++++.|. +.++..   ..+.              .+.+         
T Consensus         4 ~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~~~-p~l~~v---~~g~--------------~~~~---------   56 (430)
T 3hyw_A            4 HVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFT-PAFPHL---AMGW--------------RKFE---------   56 (430)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEECG-GGHHHH---HHTC--------------SCGG---------
T ss_pred             cEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCccC-ccHHHH---hcCC--------------CCHH---------
Confidence            5799999999999986544  456899999999987775 334333   1111              0111         


Q ss_pred             HHHHHHHHHHHHHhcCcEEEEeEEEEec--CCEEEEce-eEEEcceEEEeeCceecCCCCC-----CceechhhHHhccC
Q psy14461        168 CIRAKNDSMRELKALGIDIVRTAAAFTN--PHTIKLSN-RSVTGFNFLLAVERRCLPEPRN-----SALISADDLFRLGA  239 (535)
Q Consensus       168 ~~~~~~~~~~~~~~~gV~~~~g~~~~~~--~~~v~~~~-~~~~~d~lViATGs~p~~~i~G-----~~v~~~~~~~~~~~  239 (535)
                        ++...+...+++.||+++.++++.+|  .++|++++ .++.||+||||||+++..++||     ..+.+.+++..+.+
T Consensus        57 --~i~~~~~~~~~~~gv~~i~~~v~~Id~~~~~V~~~~g~~i~YD~LViAtG~~~~~~i~G~~e~~~~~~~~~~a~~~~~  134 (430)
T 3hyw_A           57 --DISVPLAPLLPKFNIEFINEKAESIDPDANTVTTQSGKKIEYDYLVIATGPKLVFGAEGQEENSTSICTAEHALETQK  134 (430)
T ss_dssp             --GSEEESTTTGGGGTEEEECSCEEEEETTTTEEEETTCCEEECSEEEECCCCEEECCSBTHHHHSCCCSSHHHHHHHHH
T ss_pred             --HhhhcHHHHHHHCCcEEEEeEEEEEECCCCEEEECCCCEEECCEEEEeCCCCccCCccCcccCcCCcccHHHHHHHHH
Confidence              11112234566789999999988765  57888865 7899999999999987447888     34556676654321


Q ss_pred             ------CCCcEEEECCCh------HHHH----HHHHHHhCC----CcEEEEEc-CcCC---ccCcHHHHHHHHHhhhcCC
Q psy14461        240 ------WPGKTLVLGGSL------MAVE----IAATLNFLG----VPVTLVYS-RRLL---KHFDQEMVRILLSSLTKAG  295 (535)
Q Consensus       240 ------~~k~vvViGgG~------~g~e----~A~~l~~~g----~~Vtlv~~-~~~l---~~~~~~~~~~~~~~l~~~g  295 (535)
                            ..+.++|+||+.      .+.|    ++..++++|    .+|++++. +.+.   +...+...+.+++.++++|
T Consensus       135 ~l~~~~~~~~~vv~gg~~gve~~~~~~e~a~~~~~~l~~~g~~~~v~v~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~~G  214 (430)
T 3hyw_A          135 KLQELYANPGPVVIGAIPGVSCFGPAYEFALMLHYELKKRGIRYKVPMTFITSEPYLGHFGVGGIGASKRLVEDLFAERN  214 (430)
T ss_dssp             HHHHHHHSCCCEEEEECTTCCCCHHHHHHHHHHHHHHHHTTCGGGCCEEEECSSSSTTCTTTTCSTTHHHHHHHHHHHTT
T ss_pred             HHHhhccCCceEEEeCCCcEEEhHHHHHHHHHHHHHHHHhcccccceeeeecccchhhhccchhhHHHHHHHHHHHHhCC
Confidence                  134456666553      2233    444566665    47888887 5442   3456777888999999999


Q ss_pred             eEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCC-cCCC
Q psy14461        296 VSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQ-TSVG  373 (535)
Q Consensus       296 V~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~-T~~~  373 (535)
                      |++ +++.|++++.   +.+.++.   .+|+.+++++|++++++|.+|+.... .....+..+.+|+|.||++|| |+.|
T Consensus       215 V~~~~~~~v~~v~~---~~~~~~~---~~g~~~~i~~d~vi~~~G~~~~~~~~-~~~~~l~~~~~g~i~vd~~lq~t~~~  287 (430)
T 3hyw_A          215 IDWIANVAVKAIEP---DKVIYED---LNGNTHEVPAKFTMFMPSFQGPEVVA-SAGDKVANPANKMVIVNRCFQNPTYK  287 (430)
T ss_dssp             CEEECSCEEEEECS---SEEEEEC---TTSCEEEEECSEEEEECEEECCHHHH-TTCTTTBCTTTCCBCCCTTSBCSSST
T ss_pred             eEEEeCceEEEEeC---CceEEEe---eCCCceEeecceEEEeccCCCchHHH-hcccccccCCceEEEecccccCCCCC
Confidence            999 9999999964   3333332   35666689999999999999985322 112234445678899999999 8999


Q ss_pred             CEEEeCCcCC-----------CCCCcHHHHHHHHHHHHHHHhC
Q psy14461        374 NIFAVGGIVH-----------GKPNNASMAAISARLIIERLYG  405 (535)
Q Consensus       374 ~IyA~GD~~~-----------~~~~~~~~A~~~g~~aa~~i~g  405 (535)
                      ||||+|||++           +.|++++.|.+||+++|+||+.
T Consensus       288 ~IfAiGD~a~~p~~~~~~~~~~~pk~a~~A~~qg~~~A~Ni~~  330 (430)
T 3hyw_A          288 NIFGVGVVTAIPPIEKTPIPTGVPKTGMMIEQMAMAVAHNIVN  330 (430)
T ss_dssp             TEEECSTTBCCCCSSCCSSCCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CEEEeccEEecCCcccCcCcCccchHHHHHHHHHHHHHHHHHH
Confidence            9999999984           1367888999999999999973

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=99.97  E-value=3e-29  Score=258.05  Aligned_cols=310  Identities=11%  Similarity=0.043  Sum_probs=199.8

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCC-eEEEEecCCccccccccccccccccc-chhhcccccccccccccCHHHHHHHHH
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQR-RDELQERGSHLSFRKKRRLYYPVAMS-DLELEQDSTSALNVTIRNWNAATKLIK  165 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~-~V~lie~~~~~~~~~~~l~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~l~~~~~  165 (535)
                      .++|+|||+|++|+.+|..+...+. +|+|||+++ ++......+.....+. .......+.........++........
T Consensus         4 ~~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~-~Gg~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~   82 (369)
T 3d1c_A            4 HHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT-VGHSFKHWPKSTRTITPSFTSNGFGMPDMNAISMDTSPAFTFNE   82 (369)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS-TTHHHHTSCTTCBCSSCCCCCGGGTCCCTTCSSTTCCHHHHHCC
T ss_pred             cCcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC-CCCccccCcccccccCcchhcccCCchhhhhccccccccccccc
Confidence            3689999999999999998888888 999999987 3211000000000000 000000000000000011000000000


Q ss_pred             HH--HHHHHHHHHHHHHhcCcEEEEeE-EEEec----CCEEEEceeEEEcceEEEeeCceecCCCCCCceechhhHHhcc
Q psy14461        166 RF--CIRAKNDSMRELKALGIDIVRTA-AAFTN----PHTIKLSNRSVTGFNFLLAVERRCLPEPRNSALISADDLFRLG  238 (535)
Q Consensus       166 ~~--~~~~~~~~~~~~~~~gV~~~~g~-~~~~~----~~~v~~~~~~~~~d~lViATGs~p~~~i~G~~v~~~~~~~~~~  238 (535)
                      ..  ...+...+...++..|++++.++ +..++    ...|.+.+.++.||+||||||+.+...+|+..++++.++....
T Consensus        83 ~~~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~d~vVlAtG~~~~p~ip~~~~~~~~~~~~~~  162 (369)
T 3d1c_A           83 EHISGETYAEYLQVVANHYELNIFENTVVTNISADDAYYTIATTTETYHADYIFVATGDYNFPKKPFKYGIHYSEIEDFD  162 (369)
T ss_dssp             SSCBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSCCEEEEEEEECCCSTTSBCCCSSSCEEGGGCSCGG
T ss_pred             cCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECCCeEEEEeCCCEEEeCEEEECCCCCCccCCCCCceechhhcCChh
Confidence            00  01111222345566799988774 44333    2345554457899999999999754334542344444444433


Q ss_pred             C-CCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCc-------cCcHHHHHHHHHhhhcCC-eEE-cceEEEEEE
Q psy14461        239 A-WPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLK-------HFDQEMVRILLSSLTKAG-VSI-QCCVIEKVI  307 (535)
Q Consensus       239 ~-~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~-------~~~~~~~~~~~~~l~~~g-V~i-~~~~v~~i~  307 (535)
                      . ..++|+|||+|++|+|+|..|++.|.+||++++ +.+++       .+++...+.+.+.+++.| |++ ++..|++++
T Consensus       163 ~~~~~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~~~~~~d~~~~~~~~~~~~l~~~l~~~g~v~~~~~~~v~~i~  242 (369)
T 3d1c_A          163 NFNKGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPDADPSVRLSPYTRQRLGNVIKQGARIEMNVHYTVKDID  242 (369)
T ss_dssp             GSCSSEEEEECCSHHHHHHHHHHHHTTCEEEEECC----------CTTSCCHHHHHHHHHHHHTTCCEEEECSCCEEEEE
T ss_pred             hcCCCEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCCCCCCCCCCCccCCHHHHHHHHHHHhhCCcEEEecCcEEEEEE
Confidence            3 346999999999999999999999999999999 77663       255777888999999997 999 999999997


Q ss_pred             EeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCC-CCcCCCCEEEeCCcCCCCC
Q psy14461        308 SSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEK-DQTSVGNIFAVGGIVHGKP  386 (535)
Q Consensus       308 ~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~-~~T~~~~IyA~GD~~~~~~  386 (535)
                      .+ ++...|++.   +|+. ...+|.+++|+|++|+++++  ...+++ +++|++.||++ ++|+.|+|||+|||+. .+
T Consensus       243 ~~-~~~~~v~~~---~g~~-~~~~d~vi~a~G~~~~~~~~--~~~~~~-~~~g~i~v~~~~~~t~~~~v~a~GD~~~-~~  313 (369)
T 3d1c_A          243 FN-NGQYHISFD---SGQS-VHTPHEPILATGFDATKNPI--VQQLFV-TTNQDIKLTTHDESTRYPNIFMIGATVE-ND  313 (369)
T ss_dssp             EE-TTEEEEEES---SSCC-EEESSCCEECCCBCGGGSHH--HHHHSC-CTTSCCCBCTTSBBSSSTTEEECSTTCC-CS
T ss_pred             ec-CCceEEEec---CCeE-eccCCceEEeeccCCccchh--hhhhcc-CCCCCEEechhhcccCCCCeEEeccccc-cC
Confidence            65 455667773   6762 33469999999999999766  344566 67899999975 6789999999999983 32


Q ss_pred             C----cHHHHHHHHHHHHHHHhCCC
Q psy14461        387 N----NASMAAISARLIIERLYGMQ  407 (535)
Q Consensus       387 ~----~~~~A~~~g~~aa~~i~g~~  407 (535)
                      .    ....|.+||+.+|++|.+..
T Consensus       314 ~~~~~~~~~~~~~a~~~a~~l~~~~  338 (369)
T 3d1c_A          314 NAKLCYIYKFRARFAVLAHLLTQRE  338 (369)
T ss_dssp             SCCCCSHHHHGGGHHHHHHHHHHHT
T ss_pred             CeeEEEEehhhHHHHHHHHHHhccc
Confidence            2    34567889999999998743

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=99.96  E-value=4.2e-29  Score=254.93  Aligned_cols=292  Identities=8%  Similarity=0.003  Sum_probs=191.7

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccc-cccccccccchhhcccccccc--cccccCHHHHHHHH
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKR-RLYYPVAMSDLELEQDSTSAL--NVTIRNWNAATKLI  164 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~-l~~~~~~i~~~~~~~~~~~~~--~~~~~~~~~l~~~~  164 (535)
                      .++|+|||+|++|+.+|..+...+.+|+|||+++.++..... .+......+.....++++...  .........+..+.
T Consensus         3 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   82 (357)
T 4a9w_A            3 SVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQHAWHSLHLFSPAGWSSIPGWPMPASQGPYPARAEVLAYL   82 (357)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGGGGGSCTTCBCSSCGGGSCCSSSCCCCCSSSSCBHHHHHHHH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccCCCCCcEecCchhhhhCCCCCCCCCccCCCCHHHHHHHH
Confidence            368999999999999999988889999999999865432110 000000000000111111100  01111223333322


Q ss_pred             HHHHHHHHHHHHHHHHhcCcEEEEe-EEEEe--cCCE---EEEceeEEEcceEEEeeC--ceecC-CCCC-C----ceec
Q psy14461        165 KRFCIRAKNDSMRELKALGIDIVRT-AAAFT--NPHT---IKLSNRSVTGFNFLLAVE--RRCLP-EPRN-S----ALIS  230 (535)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~gV~~~~g-~~~~~--~~~~---v~~~~~~~~~d~lViATG--s~p~~-~i~G-~----~v~~  230 (535)
                                 ...++..|++++.+ ++..+  +.+.   |++++.++.||+||+|||  ++|.. ++|| +    ..++
T Consensus        83 -----------~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~d~vV~AtG~~~~~~~~~~~g~~~~~~~~~~  151 (357)
T 4a9w_A           83 -----------AQYEQKYALPVLRPIRVQRVSHFGERLRVVARDGRQWLARAVISATGTWGEAYTPEYQGLESFAGIQLH  151 (357)
T ss_dssp             -----------HHHHHHTTCCEECSCCEEEEEEETTEEEEEETTSCEEEEEEEEECCCSGGGBCCCCCTTGGGCCSEEEE
T ss_pred             -----------HHHHHHcCCEEEcCCEEEEEEECCCcEEEEEeCCCEEEeCEEEECCCCCCCCCCCCCCCccccCCcEEE
Confidence                       35566678888775 33332  3444   444446899999999999  46666 7888 2    2333


Q ss_pred             hhhHHhc-cCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc--CcCCccC--cHHHHHHHHHhhh-------------
Q psy14461        231 ADDLFRL-GAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS--RRLLKHF--DQEMVRILLSSLT-------------  292 (535)
Q Consensus       231 ~~~~~~~-~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~--~~~l~~~--~~~~~~~~~~~l~-------------  292 (535)
                      ..++... ...+++|+|||+|++|+|+|..|++.| +|+++++  +.+++..  ..++.+.+.+.+.             
T Consensus       152 ~~~~~~~~~~~~~~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (357)
T 4a9w_A          152 SAHYSTPAPFAGMRVAIIGGGNSGAQILAEVSTVA-ETTWITQHEPAFLADDVDGRVLFERATERWKAQQEGREPDLPPG  230 (357)
T ss_dssp             GGGCCCSGGGTTSEEEEECCSHHHHHHHHHHTTTS-EEEEECSSCCCBCCTTCCTHHHHTC-------------------
T ss_pred             eccCCChhhcCCCEEEEECCCcCHHHHHHHHHhhC-CEEEEECCCCeecchhhcCccHHHHHHHHHhccccccCCCcccc
Confidence            3333322 234689999999999999999999998 6999988  4555532  3444433333332             


Q ss_pred             ---------------cCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeee
Q psy14461        293 ---------------KAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDI  356 (535)
Q Consensus       293 ---------------~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~  356 (535)
                                     +.|+ + .+..+.+++..     .+.+   .+|+  ++++|.|++|+|++|+++++  +.++++ 
T Consensus       231 ~~~~~~~~~~~~~~~~~g~-i~~~~~v~~~~~~-----~v~~---~~g~--~i~~D~vi~a~G~~p~~~~l--~~~gl~-  296 (357)
T 4a9w_A          231 GFGDIVMVPPVLDARARGV-LAAVPPPARFSPT-----GMQW---ADGT--ERAFDAVIWCTGFRPALSHL--KGLDLV-  296 (357)
T ss_dssp             ---CBCCCHHHHHHHHTTC-CCEECCCSEEETT-----EEEC---TTSC--EEECSEEEECCCBCCCCGGG--TTTTCB-
T ss_pred             cccCcccChhHHHHHhcCc-eEEecCcceEeCC-----eeEE---CCCC--EecCCEEEECCCcCCCCccc--Cccccc-
Confidence                           2333 4 44455555432     2555   3777  89999999999999999887  778888 


Q ss_pred             cCCCceEcCCC--CCcCCCCEEEeC--CcCCCCCCcHHHHHHHHHHHHHHHhC
Q psy14461        357 KKKSYVVCNEK--DQTSVGNIFAVG--GIVHGKPNNASMAAISARLIIERLYG  405 (535)
Q Consensus       357 ~~~G~i~vd~~--~~T~~~~IyA~G--D~~~~~~~~~~~A~~~g~~aa~~i~g  405 (535)
                      +++|+|.||++  ++|+.|+|||+|  ||+...+.....|..||+.||+||..
T Consensus       297 ~~~G~i~vd~~~l~~t~~~~vya~Gd~d~~~~~~~~~~~A~~~g~~~a~~i~~  349 (357)
T 4a9w_A          297 TPQGQVEVDGSGLRALAVPSVWLLGYGDWNGMASATLIGVTRYAREAVRQVTA  349 (357)
T ss_dssp             CTTSCBCBCTTSCBBSSCTTEEECSSCGGGSTTCSSTTTHHHHHHHHHHHHHH
T ss_pred             CCCCCccccCCcccCCCCCCeEEeccccccccchhhhhhhHHHHHHHHHHHHH
Confidence            88999999999  899999999999  66622567788899999999999975

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=99.96  E-value=2.3e-29  Score=266.65  Aligned_cols=277  Identities=13%  Similarity=0.058  Sum_probs=196.2

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCC--CeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQ--RRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKR  166 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~--~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  166 (535)
                      ++|+|||+|++|+.+|......+  .+|+|||+++.+..    ++.+  ++..      .       ......+..    
T Consensus         7 ~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg----~~~~--g~~p------~-------~~~~~~~~~----   63 (460)
T 1cjc_A            7 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFG----LVRF--GVAP------D-------HPEVKNVIN----   63 (460)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCT----HHHH--TSCT------T-------CGGGGGHHH----
T ss_pred             ceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCc----eeec--ccCC------C-------CccHHHHHH----
Confidence            57899999999999998776655  89999999986521    1111  0100      0       000111221    


Q ss_pred             HHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEceeEEEcceEEEeeCcee-cC-CCCC---CceechhhHHhc----
Q psy14461        167 FCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAVERRC-LP-EPRN---SALISADDLFRL----  237 (535)
Q Consensus       167 ~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~~~~~~d~lViATGs~p-~~-~i~G---~~v~~~~~~~~~----  237 (535)
                             .+...++..||+++.+...   .++|++.+..+.||+||||||+.| +. ++||   ++++++.+++.+    
T Consensus        64 -------~~~~~~~~~gv~~~~~~~v---~~~V~~~~~~~~~d~lVlAtGs~~~~~~~ipG~~~~gv~~~~~~~~~~~~~  133 (460)
T 1cjc_A           64 -------TFTQTARSDRCAFYGNVEV---GRDVTVQELQDAYHAVVLSYGAEDHQALDIPGEELPGVFSARAFVGWYNGL  133 (460)
T ss_dssp             -------HHHHHHTSTTEEEEBSCCB---TTTBCHHHHHHHSSEEEECCCCCEECCCCCTTTTSTTEEEHHHHHHHHTTC
T ss_pred             -------HHHHHHHhCCcEEEeeeEE---eeEEEeccceEEcCEEEEecCcCCCCCCCCCCCCCCcEEEHHHHHHHhhcC
Confidence                   1235567789998876521   344555444578999999999996 66 8998   568888777431    


Q ss_pred             ------c-C-CCCcEEEECCChHHHHHHHHHH--------------------hCCC-cEEEEEc-CcC------------
Q psy14461        238 ------G-A-WPGKTLVLGGSLMAVEIAATLN--------------------FLGV-PVTLVYS-RRL------------  275 (535)
Q Consensus       238 ------~-~-~~k~vvViGgG~~g~e~A~~l~--------------------~~g~-~Vtlv~~-~~~------------  275 (535)
                            . . .+++|+|||+|++|+|+|..|+                    +.|. +|++++| +.+            
T Consensus       134 ~d~~~~~~~~~~~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~~~~~ft~~el~~l  213 (460)
T 1cjc_A          134 PENRELAPDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFTIKELREM  213 (460)
T ss_dssp             GGGTTCCCCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGGGCCCCHHHHHHH
T ss_pred             ccccccccCCCCCEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCChHhhccCHHHHHHh
Confidence                  1 2 3689999999999999999999                    5687 7999998 654            


Q ss_pred             --CccC-------------------cHH---HHHHHHHhhhc--------------CCeEE-cceEEEEEEEeCCC-cE-
Q psy14461        276 --LKHF-------------------DQE---MVRILLSSLTK--------------AGVSI-QCCVIEKVISSFDG-MK-  314 (535)
Q Consensus       276 --l~~~-------------------~~~---~~~~~~~~l~~--------------~gV~i-~~~~v~~i~~~~~~-~~-  314 (535)
                        +|..                   ++.   +.+.+.+.+++              +||++ ++..+.+|..++++ ++ 
T Consensus       214 ~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~v~  293 (460)
T 1cjc_A          214 IQLPGTRPMLDPADFLGLQDRIKEAARPRKRLMELLLRTATEKPGVEEAARRASASRAWGLRFFRSPQQVLPSPDGRRAA  293 (460)
T ss_dssp             HTCTTEEEECCGGGGTTHHHHTTTSCHHHHHHHHHHHHHHHSCCCHHHHHHHHTCSEEEEEECSEEEEEEEECTTSSSEE
T ss_pred             hcCCCceeEechhhhcchhhhhhhccHHHHHHHHHHHHHHHhccccccccCCCCCCceEEEECCCChheEEcCCCCceEE
Confidence              2210                   110   23334444444              89999 99999999875224 33 


Q ss_pred             EEEEecC------------CCCCceEEEcCEEEEccCCCCCCCCCCccccCe-eecCCCceEcCCCCCcC-CCCEEEeCC
Q psy14461        315 GVRGFHP------------ESKEPFADVFKTVVNAMEKKFDFAALNLHHIGV-DIKKKSYVVCNEKDQTS-VGNIFAVGG  380 (535)
Q Consensus       315 ~v~~~~~------------~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl-~~~~~G~i~vd~~~~T~-~~~IyA~GD  380 (535)
                      .|++..+            .+|+..++++|+|++|+|++|++ +     .|+ +++++|.|.+|+++||+ .|+|||+||
T Consensus       294 ~v~~~~~~l~~~~~~~~~~~~g~~~~i~~d~Vi~a~G~~p~~-l-----~gl~~~d~~g~i~vn~~~rt~~~p~vya~Gd  367 (460)
T 1cjc_A          294 GIRLAVTRLEGIGEATRAVPTGDVEDLPCGLVLSSIGYKSRP-I-----DPSVPFDPKLGVVPNMEGRVVDVPGLYCSGW  367 (460)
T ss_dssp             EEEEEEEEEESSGGGCEEEEEEEEEEEECSEEEECCCEECCC-C-----CTTSCCBTTTTBCCEETTEETTCTTEEECTH
T ss_pred             EEEEEEEEEccccCCCcccCCCceEEEEcCEEEECCCCCCCC-C-----CCCcccccCCCeeECCCCcCcCCCCEEEEEe
Confidence            2444310            03544589999999999999997 2     356 77888899999999998 799999999


Q ss_pred             cCCCCCC-cHHHHHHHHHHHHHHHhC
Q psy14461        381 IVHGKPN-NASMAAISARLIIERLYG  405 (535)
Q Consensus       381 ~~~~~~~-~~~~A~~~g~~aa~~i~g  405 (535)
                      |+ .+|. .+..|+.+|+.+|.+|++
T Consensus       368 ~~-~g~~~~i~~a~~~g~~aa~~i~~  392 (460)
T 1cjc_A          368 VK-RGPTGVITTTMTDSFLTGQILLQ  392 (460)
T ss_dssp             HH-HCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CC-cCCCccHHHHHHHHHHHHHHHHH
Confidence            98 5555 577899999999999975

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=99.96  E-value=2.6e-29  Score=265.93  Aligned_cols=275  Identities=13%  Similarity=0.042  Sum_probs=196.5

Q ss_pred             EEEEeeCCccHHHHHHHHHhh-C------CCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQT-N------QRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAAT  161 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~-~------~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~  161 (535)
                      ++|+|||+|++|+.+|..+.. .      +.+|+|||+.+.+.+.    ..+  ++..      +       .....++.
T Consensus         4 ~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~----~~~--gv~p------~-------~~~~~~~~   64 (456)
T 1lqt_A            4 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGL----VRS--GVAP------D-------HPKIKSIS   64 (456)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTH----HHH--TSCT------T-------CTGGGGGH
T ss_pred             CEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCc----ccc--ccCC------C-------CCCHHHHH
Confidence            678999999999999987766 4      8999999998764221    111  1110      0       00111122


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEceeEEEcceEEEeeCce-ecC-CCCC---CceechhhHHh
Q psy14461        162 KLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAVERR-CLP-EPRN---SALISADDLFR  236 (535)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~~~~~~d~lViATGs~-p~~-~i~G---~~v~~~~~~~~  236 (535)
                      .+           +...++..+|+++.+..  + .++|++.+.++.||+||||||+. |+. ++||   .+++++.+++.
T Consensus        65 ~~-----------~~~~~~~~~v~~~~~v~--v-~~~v~~~~~~~~~d~lViAtG~~~~~~~~ipG~~~~gv~~~~~~~~  130 (456)
T 1lqt_A           65 KQ-----------FEKTAEDPRFRFFGNVV--V-GEHVQPGELSERYDAVIYAVGAQSDRMLNIPGEDLPGSIAAVDFVG  130 (456)
T ss_dssp             HH-----------HHHHHTSTTEEEEESCC--B-TTTBCHHHHHHHSSEEEECCCCCEECCCCCTTTTSTTEEEHHHHHH
T ss_pred             HH-----------HHHHHhcCCCEEEeeEE--E-CCEEEECCCeEeCCEEEEeeCCCCCCCCCCCCCCCCCcEEHHHHHh
Confidence            21           23456678999987732  2 34455544457899999999997 677 8998   46788777642


Q ss_pred             -----------ccC-CCCcEEEECCChHHHHHHHHHHhC--------------------C-CcEEEEEc-CcCCccCcH-
Q psy14461        237 -----------LGA-WPGKTLVLGGSLMAVEIAATLNFL--------------------G-VPVTLVYS-RRLLKHFDQ-  281 (535)
Q Consensus       237 -----------~~~-~~k~vvViGgG~~g~e~A~~l~~~--------------------g-~~Vtlv~~-~~~l~~~~~-  281 (535)
                                 +.. .+++|+|||+|++|+|+|..|++.                    | .+|+++++ +.+.+.+.+ 
T Consensus       131 ~~~~~~d~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~~~~~f~~~  210 (456)
T 1lqt_A          131 WYNAHPHFEQVSPDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQAAFTTL  210 (456)
T ss_dssp             HHTTCGGGTTCCCCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGGGCCCCHH
T ss_pred             hhhcCcccccchhhcCCCEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCChhhhccChH
Confidence                       221 368999999999999999999874                    5 49999998 655432221 


Q ss_pred             ------------------HH------------------HHHHHHhhhc------CCeEE-cceEEEEEEEeCCCcE-EEE
Q psy14461        282 ------------------EM------------------VRILLSSLTK------AGVSI-QCCVIEKVISSFDGMK-GVR  317 (535)
Q Consensus       282 ------------------~~------------------~~~~~~~l~~------~gV~i-~~~~v~~i~~~~~~~~-~v~  317 (535)
                                        ++                  .+.+.+.+++      +||++ +++.+.+|..+  +.+ .|+
T Consensus       211 elrel~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~gv~i~~~~~~~~i~~~--~~v~~v~  288 (456)
T 1lqt_A          211 ELRELADLDGVDVVIDPAELDGITDEDAAAVGKVCKQNIKVLRGYADREPRPGHRRMVFRFLTSPIEIKGK--RKVERIV  288 (456)
T ss_dssp             HHHHGGGCTTEEEECCGGGGTTCCHHHHHHHCHHHHHHHHHHHHHHTCC-CTTSEEEEEECSEEEEEEECS--SSCCEEE
T ss_pred             HHHHhhcCCCceeeeChHHhccchhhhhhhccHHHHHHHHHHHHHhhcCCCCCCceEEEEeCCCCeEEecC--CcEeEEE
Confidence                              11                  2344455555      79999 99999999864  332 244


Q ss_pred             EecC-------------CCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCC-cCCCCEEEeCCcCC
Q psy14461        318 GFHP-------------ESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQ-TSVGNIFAVGGIVH  383 (535)
Q Consensus       318 ~~~~-------------~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~-T~~~~IyA~GD~~~  383 (535)
                      ++.+             .+|+..++++|+|++|+|++|++  +    .+++++++|+|.+|+++| |+.|+|||+|||+ 
T Consensus       289 ~~~~~~~~~~~~~~~~~~~g~~~~i~~d~vi~a~G~~p~~--l----~gl~~d~~g~i~vn~~~rvt~~pgvya~GD~~-  361 (456)
T 1lqt_A          289 LGRNELVSDGSGRVAAKDTGEREELPAQLVVRSVGYRGVP--T----PGLPFDDQSGTIPNVGGRINGSPNEYVVGWIK-  361 (456)
T ss_dssp             EEEEEEEECSSSSEEEEEEEEEEEEECSEEEECSCEECCC--C----TTSCCBTTTTBCCEETTEETTCSSEEECTHHH-
T ss_pred             EEEEEecCCCcccccccCCCceEEEEcCEEEEccccccCC--C----CCCcccCCCCeeECCCCcCCCCCCEEEEeccC-
Confidence            4310             13544579999999999999998  2    256778889999999999 8999999999998 


Q ss_pred             CCCC-cHHHHHHHHHHHHHHHhC
Q psy14461        384 GKPN-NASMAAISARLIIERLYG  405 (535)
Q Consensus       384 ~~~~-~~~~A~~~g~~aa~~i~g  405 (535)
                      .+|. .+..|+.+|+.+|.+|++
T Consensus       362 ~gp~~~i~~a~~~g~~~a~~i~~  384 (456)
T 1lqt_A          362 RGPTGVIGTNKKDAQDTVDTLIK  384 (456)
T ss_dssp             HCSCSCTTHHHHHHHHHHHHHHH
T ss_pred             CCCchhHHHHHHHHHHHHHHHHH
Confidence            5555 567899999999999975

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=99.96  E-value=1.7e-27  Score=253.07  Aligned_cols=307  Identities=10%  Similarity=-0.000  Sum_probs=197.5

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCC-----CeEEEEecCCcccccccccc-cccccccchhhccccccccc--ccccCHHH
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQ-----RRDELQERGSHLSFRKKRRL-YYPVAMSDLELEQDSTSALN--VTIRNWNA  159 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~-----~~V~lie~~~~~~~~~~~l~-~~~~~i~~~~~~~~~~~~~~--~~~~~~~~  159 (535)
                      .++|+|||+|++|+++|..+...+     .+|+|||+++.+++.+..++ .....++-    +.....+.  .....+..
T Consensus        30 ~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g~~~~~~~~~~~~~~~~----~~~l~~~~~p~~~~~~~~  105 (463)
T 3s5w_A           30 VHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHGNTLVSQSELQISF----LKDLVSLRNPTSPYSFVN  105 (463)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCCSSGGGCCSSCBCSSCT----TSSSSTTTCTTCTTSHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCCCcCCCCCCCCcCCcch----hhccccccCCCCCCChhH
Confidence            478999999999999998777666     89999999998776543221 11000000    00000000  00111111


Q ss_pred             HHHHHHH------------HHHHHHHHHHHHHHhcCcEEEEeE-EEEec-----CC----EEEEce-e----EEEcceEE
Q psy14461        160 ATKLIKR------------FCIRAKNDSMRELKALGIDIVRTA-AAFTN-----PH----TIKLSN-R----SVTGFNFL  212 (535)
Q Consensus       160 l~~~~~~------------~~~~~~~~~~~~~~~~gV~~~~g~-~~~~~-----~~----~v~~~~-~----~~~~d~lV  212 (535)
                      .......            ....+...+....+..++++..++ +..++     .+    +|.+.+ .    ++.||+||
T Consensus       106 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~~~~~d~lV  185 (463)
T 3s5w_A          106 YLHKHDRLVDFINLGTFYPCRMEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTTRALV  185 (463)
T ss_dssp             HHHHTTCHHHHHHHCCSCCBHHHHHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETTSCEEEEEESEEE
T ss_pred             hhhhcCceeecccccCCCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCCCceEEEEeCEEE
Confidence            1100000            001122222344455678777765 43332     22    344433 2    89999999


Q ss_pred             EeeCceecC-C-CCC---C-ceechhhHHh-ccC------CCCcEEEECCChHHHHHHHHHHhC--CCcEEEEEc-CcCC
Q psy14461        213 LAVERRCLP-E-PRN---S-ALISADDLFR-LGA------WPGKTLVLGGSLMAVEIAATLNFL--GVPVTLVYS-RRLL  276 (535)
Q Consensus       213 iATGs~p~~-~-i~G---~-~v~~~~~~~~-~~~------~~k~vvViGgG~~g~e~A~~l~~~--g~~Vtlv~~-~~~l  276 (535)
                      ||||+.|.. + +++   . .++++.++.. +..      .+++|+|||+|.+|+|+|..|++.  +.+|++++| +.++
T Consensus       186 lAtG~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~~  265 (463)
T 3s5w_A          186 VSPGGTPRIPQVFRALKGDGRVFHHSQYLEHMAKQPCSSGKPMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASALK  265 (463)
T ss_dssp             ECCCCEECCCGGGGGGTTCTTEEEGGGHHHHHCC-------CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSSCC
T ss_pred             ECCCCCCCCcchhhhcCCCCcEEECHHHHhhHHHhhhcccCCCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCCc
Confidence            999999876 4 333   2 5565555543 332      478999999999999999999999  899999999 7765


Q ss_pred             cc--------------------CcHHHHHHHHHhhhc--------------------------CCeEE-cceEEEEEEEe
Q psy14461        277 KH--------------------FDQEMVRILLSSLTK--------------------------AGVSI-QCCVIEKVISS  309 (535)
Q Consensus       277 ~~--------------------~~~~~~~~~~~~l~~--------------------------~gV~i-~~~~v~~i~~~  309 (535)
                      |.                    ++++....+.+.+..                          .||++ +++.|++++.+
T Consensus       266 p~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~~~~~v~~v~~~  345 (463)
T 3s5w_A          266 PADDSPFVNEVFAPKFTDLIYSREHAERERLLREYHNTNYSVVDTDLIERIYGVFYRQKVSGIPRHAFRCMTTVERATAT  345 (463)
T ss_dssp             BCCCCHHHHGGGSHHHHHHHHHSCHHHHHHHHHHTGGGTSSCBCHHHHHHHHHHHHHHHHHCCCCSEEETTEEEEEEEEE
T ss_pred             CccCCccchhccChhHHHHHhcCCHHHHHHHHHHhhccCCCcCCHHHHHHHHHHHHHHHhcCCCCeEEEeCCEEEEEEec
Confidence            52                    222223333333222                          69999 99999999886


Q ss_pred             CCCcEEEEEecCCCCCceEEEcCEEEEccCCCCC--CCCCCccccCeeecCCCceEcCCCCCcC-----CCCEEEeCCcC
Q psy14461        310 FDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFD--FAALNLHHIGVDIKKKSYVVCNEKDQTS-----VGNIFAVGGIV  382 (535)
Q Consensus       310 ~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~--~~~l~l~~~gl~~~~~G~i~vd~~~~T~-----~~~IyA~GD~~  382 (535)
                       ++.+.|++.+..+|+.+++++|.||+|+|++|+  .+++  +.+...+   |.+.||+++++.     .|+|||+|||.
T Consensus       346 -~~~~~v~~~~~~~g~~~~~~~D~Vv~AtG~~p~~~~~~l--~~l~~~~---g~i~v~~~~~~~~~~~~~~~Ifa~G~~~  419 (463)
T 3s5w_A          346 -AQGIELALRDAGSGELSVETYDAVILATGYERQLHRQLL--EPLAEYL---GDHEIGRDYRLQTDERCKVAIYAQGFSQ  419 (463)
T ss_dssp             -TTEEEEEEEETTTCCEEEEEESEEEECCCEECCC-CTTT--GGGGGGB---C--CCCTTSBCCBCTTBCSEEEESSCCH
T ss_pred             -CCEEEEEEEEcCCCCeEEEECCEEEEeeCCCCCCccchh--HHHHHHh---CCcccCcccccccCCCCCCeEEEcCCCc
Confidence             566778886545787667999999999999999  5555  4333222   789999999864     46799999997


Q ss_pred             C----CCCCcHHHHHHHHHHHHHHHh
Q psy14461        383 H----GKPNNASMAAISARLIIERLY  404 (535)
Q Consensus       383 ~----~~~~~~~~A~~~g~~aa~~i~  404 (535)
                      .    ..+.+...|.+++++++..+-
T Consensus       420 ~~~g~~~~~l~~~a~r~~~i~~~~~~  445 (463)
T 3s5w_A          420 ASHGLSDTLLSVLPVRAEEISGSLYQ  445 (463)
T ss_dssp             HHHCTTTTSSTTHHHHHHHHHHHHHH
T ss_pred             ccCCcCccchhHHHHHHHHHHHHHHh
Confidence            4    346677889999999877664

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=99.95  E-value=1.8e-26  Score=245.10  Aligned_cols=281  Identities=12%  Similarity=-0.009  Sum_probs=189.9

Q ss_pred             EEEEeeCCccHHHHHHHHHhh---CCCe---EEEEecCCccccccc----------cccc----cccc---ccchhhccc
Q psy14461         89 LYLDRIGDEGILLEEELKRQT---NQRR---DELQERGSHLSFRKK----------RRLY----YPVA---MSDLELEQD  145 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~---~~~~---V~lie~~~~~~~~~~----------~l~~----~~~~---i~~~~~~~~  145 (535)
                      .+|+|||+|++|+++|..+..   .+.+   |+|||+.+.+++...          +++.    |...   .+.....++
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g~~~~~~~y~~l~~~~~~~~~~~~   82 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLEFA   82 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSCCSCCSBCTTSSBCCCCCCTTCBCSSCGGGTCBT
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeecCCCCCccccCCCCcCccccchhhcCChhhcccC
Confidence            478999999999999998877   7888   999999876542211          0010    0000   000000000


Q ss_pred             ccccc------cccccCHHHHHHHHHHHHHHHHHHHHHHHHhcCcE--EEEe-EEEEe--cCC----EEEEce------e
Q psy14461        146 STSAL------NVTIRNWNAATKLIKRFCIRAKNDSMRELKALGID--IVRT-AAAFT--NPH----TIKLSN------R  204 (535)
Q Consensus       146 ~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gV~--~~~g-~~~~~--~~~----~v~~~~------~  204 (535)
                      ++...      ....++...+.++..           ..++..|++  +..+ ++..+  +..    +|++.+      .
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~l~~~l~-----------~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~  151 (464)
T 2xve_A           83 DYTFDEHFGKPIASYPPREVLWDYIK-----------GRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIY  151 (464)
T ss_dssp             TBCHHHHHSSCCCSSCBHHHHHHHHH-----------HHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTEEE
T ss_pred             CCCCCcccCCCCCCCCCHHHHHHHHH-----------HHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCceE
Confidence            00000      011123333333333           334445665  5433 23332  122    566643      5


Q ss_pred             EEEcceEEEeeC--ceecC-CCCC-C----ceechhhHHhcc-CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-Cc
Q psy14461        205 SVTGFNFLLAVE--RRCLP-EPRN-S----ALISADDLFRLG-AWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RR  274 (535)
Q Consensus       205 ~~~~d~lViATG--s~p~~-~i~G-~----~v~~~~~~~~~~-~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~  274 (535)
                      ++.||+||+|||  +.|+. ++|| +    .++++.++.... ..+++|+|||+|++|+|+|..|++.|.+|+++++ +.
T Consensus       152 ~~~~d~VVvAtG~~s~p~~p~ipG~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~  231 (464)
T 2xve_A          152 SEEFDYVVCCTGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTA  231 (464)
T ss_dssp             EEEESEEEECCCSSSSBCCCCCBTTTTCCSEEEEGGGCCCGGGGTTSEEEEECCSTTHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             EEEcCEEEECCCCCCCCccCCCCCcccCCceEEehhhhCCHhHcCCCEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCC
Confidence            789999999999  88988 8888 2    255666555433 3579999999999999999999999999999999 77


Q ss_pred             CCccCcHHHHHHHHHhhhcCCeEEcceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCe
Q psy14461        275 LLKHFDQEMVRILLSSLTKAGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGV  354 (535)
Q Consensus       275 ~l~~~~~~~~~~~~~~l~~~gV~i~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl  354 (535)
                      +++..-            ..||++. ..|++++.   +  .|++.   +|+  ++++|.||+|+|++|+++++. +.+++
T Consensus       232 ~~~~~~------------~~~V~~~-~~V~~i~~---~--~V~~~---dG~--~i~~D~Vi~atG~~p~~~~l~-~~~gl  287 (464)
T 2xve_A          232 PMGYKW------------PENWDER-PNLVRVDT---E--NAYFA---DGS--SEKVDAIILCTGYIHHFPFLN-DDLRL  287 (464)
T ss_dssp             CCCCCC------------CTTEEEC-SCEEEECS---S--EEEET---TSC--EEECSEEEECCCBCCCCTTBC-TTTCC
T ss_pred             CCCCCC------------CCceEEc-CCeEEEeC---C--EEEEC---CCC--EEeCCEEEECCCCCCCCCCcC-ccccc
Confidence            765321            2477773 45777752   2  36663   787  789999999999999999884 34678


Q ss_pred             eecCCCceEcCC---CCCcCCCCEEEeCCcCCCCCCcHHHHHHHHHHHHHHHhCCC
Q psy14461        355 DIKKKSYVVCNE---KDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQ  407 (535)
Q Consensus       355 ~~~~~G~i~vd~---~~~T~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g~~  407 (535)
                      +++++|++ ++.   .++|+.|+|||+||+. . ....+.|..||+.+|++|.|..
T Consensus       288 ~~~~~~~v-~~~~~~~~~t~~p~i~aiGd~~-~-~~~~~~a~~qa~~~a~~l~G~~  340 (464)
T 2xve_A          288 VTNNRLWP-LNLYKGVVWEDNPKFFYIGMQD-Q-WYSFNMFDAQAWYARDVIMGRL  340 (464)
T ss_dssp             CCCSSSCC-SSEETTTEESSSTTEEECSCSC-C-SSCHHHHHHHHHHHHHHHTTSS
T ss_pred             ccCCCccc-ccccceEecCCCCCEEEEeCcc-c-ccchHHHHHHHHHHHHHHcCCC
Confidence            87766566 443   3578999999999998 4 4578899999999999999864

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=99.95  E-value=9.5e-28  Score=268.13  Aligned_cols=271  Identities=10%  Similarity=0.078  Sum_probs=193.1

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHH
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRF  167 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  167 (535)
                      ..+|+|||+|++|+.+|..+...+.+|+|||+++.+++.......    ++       +       ..+|..+.++.+..
T Consensus       389 ~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~~GG~~~~~~~----~p-------g-------~~~~~~~~~~~~~~  450 (729)
T 1o94_A          389 KDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAA----LP-------G-------LGEWSYHRDYRETQ  450 (729)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHHTT----ST-------T-------CGGGHHHHHHHHHH
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCeeeeccc----CC-------C-------hHHHHHHHHHHHHH
Confidence            368999999999999999988889999999999876432110000    11       1       11344444444322


Q ss_pred             HHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEce-eEEEcceEEEeeCcee--------cC-CCCC-C----ceechh
Q psy14461        168 CIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSN-RSVTGFNFLLAVERRC--------LP-EPRN-S----ALISAD  232 (535)
Q Consensus       168 ~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~-~~~~~d~lViATGs~p--------~~-~i~G-~----~v~~~~  232 (535)
                      ++.+.     .....++++..       .+.+++++ ..+.||+||||||+.|        .. ++|| +    ++++..
T Consensus       451 i~~~~-----~~~~~~v~i~~-------~~~v~~~~~~~~~~d~vviAtG~~~~~~~~~~p~~~~ipG~~~~~~~v~~~~  518 (729)
T 1o94_A          451 ITKLL-----KKNKESQLALG-------QKPMTADDVLQYGADKVIIATGARWNTDGTNCLTHDPIPGADASLPDQLTPE  518 (729)
T ss_dssp             HHHHH-----HHSTTCEEECS-------CCCCCHHHHHTSCCSEEEECCCEEECSSCCCTTTSSCCTTCCTTSTTEECHH
T ss_pred             HHHhh-----cccCCceEEEe-------CeEEehhhccccCCCEEEEcCCCCcccccccCccCCCCCCccccCCCEEEHH
Confidence            22110     01123555432       23344433 4688999999999984        45 7888 4    688888


Q ss_pred             hHHhccC-CCCcEEEEC--CChHHHHHHHHHHhCCCcEEEEEc-CcCCcc--CcHHHHHHHHHhhhcCCeEE-cceEEEE
Q psy14461        233 DLFRLGA-WPGKTLVLG--GSLMAVEIAATLNFLGVPVTLVYS-RRLLKH--FDQEMVRILLSSLTKAGVSI-QCCVIEK  305 (535)
Q Consensus       233 ~~~~~~~-~~k~vvViG--gG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~--~~~~~~~~~~~~l~~~gV~i-~~~~v~~  305 (535)
                      +++.... .+++|+|||  ||++|+|+|..|+++|.+||++++ + +++.  ++.. ...+.+.|+++||++ +++.+++
T Consensus       519 ~~l~~~~~~gk~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~-l~~~~~~~~~-~~~~~~~l~~~GV~i~~~~~v~~  596 (729)
T 1o94_A          519 QVMDGKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH-LANYMHFTLE-YPNMMRRLHELHVEELGDHFCSR  596 (729)
T ss_dssp             HHHHCCSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC-TTHHHHHTTC-HHHHHHHHHHTTCEEECSEEEEE
T ss_pred             HHhcCCCCCCCeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc-cccccccccc-HHHHHHHHHhCCCEEEcCcEEEE
Confidence            8876543 357999999  999999999999999999999999 7 6542  3322 456778888999999 9999999


Q ss_pred             EEEeCCCcEEEEEecCCCC-----------------CceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCC
Q psy14461        306 VISSFDGMKGVRGFHPESK-----------------EPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKD  368 (535)
Q Consensus       306 i~~~~~~~~~v~~~~~~~G-----------------~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~  368 (535)
                      |+.   +.+.++... .++                 +++++++|.||+|+|++|+++++  +.++        ..+|+++
T Consensus       597 i~~---~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~aD~Vv~a~G~~p~~~l~--~~l~--------~~vd~~~  662 (729)
T 1o94_A          597 IEP---GRMEIYNIW-GDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRHSECTLW--NELK--------ARESEWA  662 (729)
T ss_dssp             EET---TEEEEEETT-CSCSCCCCCCTTSCSSCCCCCCEEEECSEEEEESCEEECCHHH--HHHH--------HTGGGTG
T ss_pred             EEC---CeEEEEEec-CCceEEecccccccccccCCcceeeeCCEEEECCCCCCChHHH--HHHh--------hhccccc
Confidence            974   334443311 122                 23359999999999999999865  3321        1368899


Q ss_pred             CcCCCCEEEeCCcCCCCCCcHHHHHHHHHHHHHHHhCC
Q psy14461        369 QTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGM  406 (535)
Q Consensus       369 ~T~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g~  406 (535)
                      +|+.|+|||+|||+ + +..+..|++||+.||.+|.+.
T Consensus       663 ~t~~~~VyAiGD~~-~-~~~~~~A~~~G~~aA~~i~~~  698 (729)
T 1o94_A          663 ENDIKGIYLIGDAE-A-PRLIADATFTGHRVAREIEEA  698 (729)
T ss_dssp             GGTCCEEEECGGGT-S-CCCHHHHHHHHHHHHHTTTSS
T ss_pred             ccCCCCeEEEeCcc-c-hhhHHHHHHHHHHHHHHhhhh
Confidence            99999999999999 4 667788999999999999864

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=99.95  E-value=7.5e-28  Score=267.76  Aligned_cols=263  Identities=16%  Similarity=0.095  Sum_probs=196.2

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHH
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRF  167 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  167 (535)
                      ..+|+|||+|++|+.+|..+...+.+|+|||+++.+++.......    +++              ..++..+..+..  
T Consensus       391 ~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~~~GG~~~~~~~----~p~--------------~~~~~~~~~~~~--  450 (690)
T 3k30_A          391 DARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGRVTQESA----LPG--------------LSAWGRVKEYRE--  450 (690)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTHHHHHHT----STT--------------CGGGGHHHHHHH--
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCEeeeccC----CCc--------------hhHHHHHHHHHH--
Confidence            368999999999999999888889999999999876543211000    111              113334444433  


Q ss_pred             HHHHHHHHHHHHHhc-CcEEEEeEEEEecCCEEEEce-eEEEcceEEEeeCceec--------C-CCCC---Cceechhh
Q psy14461        168 CIRAKNDSMRELKAL-GIDIVRTAAAFTNPHTIKLSN-RSVTGFNFLLAVERRCL--------P-EPRN---SALISADD  233 (535)
Q Consensus       168 ~~~~~~~~~~~~~~~-gV~~~~g~~~~~~~~~v~~~~-~~~~~d~lViATGs~p~--------~-~i~G---~~v~~~~~  233 (535)
                               ..++.. +|+++.++       .++..+ .++.||+||||||+.|+        . ++||   ..+++..+
T Consensus       451 ---------~~~~~~~gv~~~~~~-------~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~~~~i~G~~~~~v~~~~~  514 (690)
T 3k30_A          451 ---------AVLAELPNVEIYRES-------PMTGDDIVEFGFEHVITATGATWRTDGVARFHTTALPIAEGMQVLGPDD  514 (690)
T ss_dssp             ---------HHHHTCTTEEEESSC-------CCCHHHHHHTTCCEEEECCCEEECSSCCSSSCSSCCCBCTTSEEECHHH
T ss_pred             ---------HHHHHcCCCEEEECC-------eecHHHHhhcCCCEEEEcCCCccccccccccCCCCCCCCCCCcEEcHHH
Confidence                     445555 88877653       233222 46789999999999964        5 6787   46888888


Q ss_pred             HHhcc-CCCCcEEEEC--CChHHHHHHHHHHhCCCcEEEEEc-CcCCccCc-HHHHHHHHHhhhcCCeEE-cceEEEEEE
Q psy14461        234 LFRLG-AWPGKTLVLG--GSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFD-QEMVRILLSSLTKAGVSI-QCCVIEKVI  307 (535)
Q Consensus       234 ~~~~~-~~~k~vvViG--gG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~-~~~~~~~~~~l~~~gV~i-~~~~v~~i~  307 (535)
                      ++... ..+++|+|||  +|++|+|+|..|++.|.+|+++++ +.+++..+ +.....+.+.+++.||++ ++++|++|+
T Consensus       515 ~l~~~~~~g~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~l~~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~  594 (690)
T 3k30_A          515 LFAGRLPDGKKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVSSWTNNTFEVNRIQRRLIENGVARVTDHAVVAVG  594 (690)
T ss_dssp             HHTTCCCSSSEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSSTTGGGGGGTCHHHHHHHHHHTTCEEEESEEEEEEE
T ss_pred             HhCCCCCCCCEEEEEcCCCCccHHHHHHHHHhCCCeeEEEecccccccccccchhHHHHHHHHHHCCCEEEcCcEEEEEE
Confidence            87653 3357899999  999999999999999999999999 88776543 556778888899999999 999999997


Q ss_pred             EeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCCC
Q psy14461        308 SSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPN  387 (535)
Q Consensus       308 ~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~~  387 (535)
                      .   +...+....  +++.+++++|.|++|+|++|++.++  +.++    ..+.       +|+.|+|||+|||+ + +.
T Consensus       595 ~---~~~~v~~~~--~~~~~~i~aD~VV~A~G~~p~~~l~--~~l~----~~~~-------~t~~~~VyaiGD~~-~-~~  654 (690)
T 3k30_A          595 A---GGVTVRDTY--ASIERELECDAVVMVTARLPREELY--LDLV----ARRD-------AGEIASVRGIGDAW-A-PG  654 (690)
T ss_dssp             T---TEEEEEETT--TCCEEEEECSEEEEESCEEECCHHH--HHHH----HHHH-------HTSCSEEEECGGGT-S-CB
T ss_pred             C---CeEEEEEcc--CCeEEEEECCEEEECCCCCCChHHH--HHHh----hhhc-------ccCCCCEEEEeCCC-c-hh
Confidence            4   334444322  3444589999999999999998865  3322    1221       78999999999999 4 55


Q ss_pred             cHHHHHHHHHHHHHHHhCC
Q psy14461        388 NASMAAISARLIIERLYGM  406 (535)
Q Consensus       388 ~~~~A~~~g~~aa~~i~g~  406 (535)
                      ....|++||+.||.||.+.
T Consensus       655 ~~~~A~~~g~~aa~~i~~~  673 (690)
T 3k30_A          655 TIAAAVWSGRRAAEEFDAV  673 (690)
T ss_dssp             CHHHHHHHHHHHHHHTTCC
T ss_pred             hHHHHHHHHHHHHHHHHhh
Confidence            6667999999999999875

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=99.95  E-value=7.3e-27  Score=267.92  Aligned_cols=272  Identities=11%  Similarity=0.009  Sum_probs=193.6

Q ss_pred             eEEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHH
Q psy14461         87 AVLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKR  166 (535)
Q Consensus        87 ~~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  166 (535)
                      ..++|+|||+|++|+.+|+.+...+.+|+|||+++.+++.....+..  .+.+.               ...++..    
T Consensus       127 ~~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~GG~~~~~~k~--~i~~~---------------~~~~~~~----  185 (965)
T 2gag_A          127 VHTDVLVVGAGPAGLAAAREASRSGARVMLLDERAEAGGTLLDTAGE--QIDGM---------------DSSAWIE----  185 (965)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGGGSSCC--EETTE---------------EHHHHHH----
T ss_pred             cCCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCceeccCCcc--ccCCC---------------CHHHHHH----
Confidence            34789999999999999999988899999999998764321100000  01110               0111111    


Q ss_pred             HHHHHHHHHHHHHHh-cCcEEEEeE-EEEecC-CEE----------EE-------ce--eEEEcceEEEeeCceecC-CC
Q psy14461        167 FCIRAKNDSMRELKA-LGIDIVRTA-AAFTNP-HTI----------KL-------SN--RSVTGFNFLLAVERRCLP-EP  223 (535)
Q Consensus       167 ~~~~~~~~~~~~~~~-~gV~~~~g~-~~~~~~-~~v----------~~-------~~--~~~~~d~lViATGs~p~~-~i  223 (535)
                             .....+.. .+|+++.++ +..++. ..+          .+       .+  .++.||+||||||++|+. ++
T Consensus       186 -------~~~~~l~~~~~v~~~~~~~V~~i~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~i~~d~lVlATGs~p~~~~i  258 (965)
T 2gag_A          186 -------QVTSELAEAEETTHLQRTTVFGSYDANYLIAAQRRTVHLDGPSGPGVSRERIWHIRAKQVVLATGAHERPIVF  258 (965)
T ss_dssp             -------HHHHHHHHSTTEEEESSEEEEEEETTTEEEEEEECSTTCSSCCCTTCCSEEEEEEEEEEEEECCCEEECCCCC
T ss_pred             -------HHHHHHhhcCCcEEEeCCEEEeeecCCceeeeEeecccccccccccCCCCceEEEECCEEEECCCCccCCCCC
Confidence                   11233444 488887664 222221 111          11       11  468999999999999998 89


Q ss_pred             CC---CceechhhH---Hh-ccC-CCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcC
Q psy14461        224 RN---SALISADDL---FR-LGA-WPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKA  294 (535)
Q Consensus       224 ~G---~~v~~~~~~---~~-~~~-~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~  294 (535)
                      ||   ++++++.++   +. ... .+++|+|||+|++|+|+|..|++.|.+|+++++ +.+++.         .+.+++.
T Consensus       259 pG~~~~gv~~~~~~~~~l~~~~~~~gk~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~~~~---------~~~l~~~  329 (965)
T 2gag_A          259 ENNDRPGIMLAGAVRSYLNRYGVRAGARIAVATTNDSAYELVRELAATGGVVAVIDARSSISAA---------AAQAVAD  329 (965)
T ss_dssp             BTCCSTTEEEHHHHHHHHHTTCEESCSSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSCCHH---------HHHHHHT
T ss_pred             CCCCCCCEEEhHHHHHHHHhcCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCccchh---------HHHHHhC
Confidence            98   567776544   32 122 348999999999999999999999999999999 776532         4567888


Q ss_pred             CeEE-cceEEEEEEEe-CCCcEEEEEec--CC--CCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCC
Q psy14461        295 GVSI-QCCVIEKVISS-FDGMKGVRGFH--PE--SKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKD  368 (535)
Q Consensus       295 gV~i-~~~~v~~i~~~-~~~~~~v~~~~--~~--~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~  368 (535)
                      ||++ +++.++++..+ ++....|++.+  ..  +|+..++++|.|++++|++||++++  ..      .+|.|.+|+++
T Consensus       330 GV~v~~~~~v~~i~~~~~~~v~~v~~~~~~~~~~~G~~~~i~~D~Vv~a~G~~P~~~l~--~~------~~g~i~vd~~~  401 (965)
T 2gag_A          330 GVQVISGSVVVDTEADENGELSAIVVAELDEARELGGTQRFEADVLAVAGGFNPVVHLH--SQ------RQGKLDWDTTI  401 (965)
T ss_dssp             TCCEEETEEEEEEEECTTSCEEEEEEEEECTTCCEEEEEEEECSEEEEECCEEECCHHH--HH------TTCCEEEETTT
T ss_pred             CeEEEeCCEeEEEeccCCCCEEEEEEEeccccCCCCceEEEEcCEEEECCCcCcChHHH--Hh------CCCcEEEcCcc
Confidence            9999 99999999873 12222566642  00  2544589999999999999999865  22      24678899888


Q ss_pred             C-----cCCCCEEEeCCcCCCCCCcHHHHHHHHHHHHHHHhC
Q psy14461        369 Q-----TSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYG  405 (535)
Q Consensus       369 ~-----T~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g  405 (535)
                      +     |+.|+|||+|||+ +.+.+. .|..||++||.+|++
T Consensus       402 ~~~v~~ts~p~IyAaGD~a-~~~~l~-~A~~~G~~aA~~i~~  441 (965)
T 2gag_A          402 HAFVPADAVANQHLAGAMT-GRLDTA-SALSTGAATGAAAAT  441 (965)
T ss_dssp             TEEEECSCCTTEEECGGGG-TCCSHH-HHHHHHHHHHHHHHH
T ss_pred             cccccCCCCCCEEEEEecC-CchhHH-HHHHHHHHHHHHHHH
Confidence            7     8999999999999 766655 899999999999974

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=99.94  E-value=1.3e-25  Score=249.00  Aligned_cols=253  Identities=13%  Similarity=0.058  Sum_probs=187.1

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHH
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRF  167 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  167 (535)
                      ..+|+|||+|++|+.+|..+...+.+|+|||+++.+++... +...   +++              ..++.++..+    
T Consensus       373 ~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~gg~~~-~~~~---~~~--------------~~~~~~~~~~----  430 (671)
T 1ps9_A          373 KKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFN-IAKQ---IPG--------------KEEFYETLRY----  430 (671)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHH-HHTT---STT--------------CTTHHHHHHH----
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCeee-cccc---CCC--------------HHHHHHHHHH----
Confidence            36899999999999999998888999999999987654311 1100   111              1123222222    


Q ss_pred             HHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEceeEE-EcceEEEeeCceecC-CCCC---CceechhhHHhcc-CCC
Q psy14461        168 CIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSNRSV-TGFNFLLAVERRCLP-EPRN---SALISADDLFRLG-AWP  241 (535)
Q Consensus       168 ~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~~~~-~~d~lViATGs~p~~-~i~G---~~v~~~~~~~~~~-~~~  241 (535)
                             +...+++.||+++.++...  .       ..+ .||+||||||++|+. ++||   ..+++..+++... ..+
T Consensus       431 -------~~~~~~~~gv~~~~~~~v~--~-------~~~~~~d~lviAtG~~p~~~~i~G~~~~~v~~~~~~l~~~~~~~  494 (671)
T 1ps9_A          431 -------YRRMIEVTGVTLKLNHTVT--A-------DQLQAFDETILASGIVPRTPPIDGIDHPKVLSYLDVLRDKAPVG  494 (671)
T ss_dssp             -------HHHHHHHHTCEEEESCCCC--S-------SSSCCSSEEEECCCEEECCCCCBTTTSTTEEEHHHHHTSCCCCC
T ss_pred             -------HHHHHHHcCCEEEeCcEec--H-------HHhhcCCEEEEccCCCcCCCCCCCCCCCcEeeHHHHhhCCCCCC
Confidence                   2355667799988876311  1       124 899999999999999 8998   4588888877643 357


Q ss_pred             CcEEEECCChHHHHHHHHHHhCCC-------------------------------------cEEEEEc-CcCC-ccCcHH
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGV-------------------------------------PVTLVYS-RRLL-KHFDQE  282 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~-------------------------------------~Vtlv~~-~~~l-~~~~~~  282 (535)
                      ++|+|||||++|+|+|..|++.|.                                     +|+++++ +..+ +.+++.
T Consensus       495 ~~VvVIGgG~~g~E~A~~l~~~G~~vtv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~l~~~l~~~  574 (671)
T 1ps9_A          495 NKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKT  574 (671)
T ss_dssp             SEEEEECCHHHHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTTCCSGGGBCTTCCCCCCCSSEEEEECSSCSCTTTTSCTT
T ss_pred             CeEEEECCChhHHHHHHHHHhcCCCcccchhhhhhhhcccccccccccccccccccCCCCcEEEEEEecchhhccccccc
Confidence            899999999999999999998874                                     4566776 5444 356677


Q ss_pred             HHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCc
Q psy14461        283 MVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSY  361 (535)
Q Consensus       283 ~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~  361 (535)
                      ....+.+.|+++||++ +++++++++.   +.+.++ .   +|+++++++|.||+|+|++||++++  +.    +..   
T Consensus       575 ~~~~~~~~l~~~GV~v~~~~~v~~i~~---~~v~~~-~---~G~~~~i~~D~Vi~a~G~~p~~~l~--~~----l~~---  638 (671)
T 1ps9_A          575 TGWIHRTTLLSRGVKMIPGVSYQKIDD---DGLHVV-I---NGETQVLAVDNVVICAGQEPNRALA--QP----LID---  638 (671)
T ss_dssp             THHHHHHHHHHTTCEEECSCEEEEEET---TEEEEE-E---TTEEEEECCSEEEECCCEEECCTTH--HH----HHT---
T ss_pred             cHHHHHHHHHhcCCEEEeCcEEEEEeC---CeEEEe-c---CCeEEEEeCCEEEECCCccccHHHH--HH----HHh---
Confidence            7778888899999999 9999999973   334443 2   6755589999999999999999875  22    111   


Q ss_pred             eEcCCCCCcCCCCEEEeCCcCCCCCCcHHHHHHHHHHHHHHH
Q psy14461        362 VVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERL  403 (535)
Q Consensus       362 i~vd~~~~T~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i  403 (535)
                               ..++||++|||+...+..+..|++||..+|.||
T Consensus       639 ---------~g~~v~aiGD~~~~~~~~~~~A~~~g~~aA~~i  671 (671)
T 1ps9_A          639 ---------SGKTVHLIGGCDVAMELDARRAIAQGTRLALEI  671 (671)
T ss_dssp             ---------TTCCEEECGGGTCCSSCCHHHHHHHHHHHHHHC
T ss_pred             ---------cCCCEEEECCcCccCchhHHHHHHHHHHHHHhC
Confidence                     226899999998333446889999999999986

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.93  E-value=3.5e-25  Score=236.89  Aligned_cols=247  Identities=13%  Similarity=0.069  Sum_probs=178.5

Q ss_pred             eEEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHH
Q psy14461         87 AVLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKR  166 (535)
Q Consensus        87 ~~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  166 (535)
                      ...+|+|||+|++|+++|+.+... .+|+|||+++.+++......+.   ..+       +     .. +..++..+   
T Consensus       107 ~~~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~~~~~~~~---~~g-------~-----~~-~~~~~~~~---  166 (493)
T 1y56_A          107 VVVDVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGDMWLKGIK---QEG-------F-----NK-DSRKVVEE---  166 (493)
T ss_dssp             EEESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSCSGGGTCSE---ETT-------T-----TE-EHHHHHHH---
T ss_pred             ccCCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCCeeeccccc---cCC-------C-----CC-CHHHHHHH---
Confidence            346899999999999999988777 9999999998775543211111   000       0     00 12222211   


Q ss_pred             HHHHHHHHHHHHHHhcCcEEEEeEEE-E--ecCCEEEE---c-e--eEEEcceEEEeeCceecC-CCCC---Cceechhh
Q psy14461        167 FCIRAKNDSMRELKALGIDIVRTAAA-F--TNPHTIKL---S-N--RSVTGFNFLLAVERRCLP-EPRN---SALISADD  233 (535)
Q Consensus       167 ~~~~~~~~~~~~~~~~gV~~~~g~~~-~--~~~~~v~~---~-~--~~~~~d~lViATGs~p~~-~i~G---~~v~~~~~  233 (535)
                              +.+.+ ..+++++.++.. .  .+.+.+.+   + +  ..+.||+||||||+.|+. ++||   +++++..+
T Consensus       167 --------l~~~l-~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~d~lvlAtGa~~~~~~~~g~~~~gv~~~~~  237 (493)
T 1y56_A          167 --------LVGKL-NENTKIYLETSALGVFDKGEYFLVPVVRGDKLIEILAKRVVLATGAIDSTMLFENNDMPGVFRRDF  237 (493)
T ss_dssp             --------HHHTC-CTTEEEETTEEECCCEECSSSEEEEEEETTEEEEEEESCEEECCCEEECCCCCTTTTSTTEEEHHH
T ss_pred             --------HHHHH-hcCCEEEcCCEEEEEEcCCcEEEEEEecCCeEEEEECCEEEECCCCCccCCCCCCCCCCCEEEcHH
Confidence                    11223 558887655422 1  12332322   2 2  369999999999999998 8998   56888777


Q ss_pred             HHhcc-----CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEcCcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEE
Q psy14461        234 LFRLG-----AWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVI  307 (535)
Q Consensus       234 ~~~~~-----~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~  307 (535)
                      +..+.     ..+++++|||+|++|+|                                 +.+++.||++ +++.+++++
T Consensus       238 ~~~~~~~~~~~~~~~vvViGgG~~gle---------------------------------~~l~~~GV~v~~~~~v~~i~  284 (493)
T 1y56_A          238 ALEVMNVWEVAPGRKVAVTGSKADEVI---------------------------------QELERWGIDYVHIPNVKRVE  284 (493)
T ss_dssp             HHHHHHTSCBCSCSEEEEESTTHHHHH---------------------------------HHHHHHTCEEEECSSEEEEE
T ss_pred             HHHHHHhcccCCCCEEEEECCCHHHHH---------------------------------HHHHhCCcEEEeCCeeEEEe
Confidence            65432     23589999999999998                                 3455679999 999999998


Q ss_pred             EeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCee--ecCCCceE-cCCCCCcCCCCEEEeCCcCCC
Q psy14461        308 SSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVD--IKKKSYVV-CNEKDQTSVGNIFAVGGIVHG  384 (535)
Q Consensus       308 ~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~--~~~~G~i~-vd~~~~T~~~~IyA~GD~~~~  384 (535)
                      .+ ++...+.+   .+|+  ++++|.|++|+|++|+++++  +.+|++  ++++|+|. +|++++ +.|+|||+|||+ +
T Consensus       285 ~~-~~v~~v~~---~~g~--~i~aD~Vv~a~G~~p~~~l~--~~~g~~~~~~~~g~i~~vd~~~~-s~~~vya~GD~~-~  354 (493)
T 1y56_A          285 GN-EKVERVID---MNNH--EYKVDALIFADGRRPDINPI--TQAGGKLRFRRGYYSPVLDEYHR-IKDGIYVAGSAV-S  354 (493)
T ss_dssp             CS-SSCCEEEE---TTCC--EEECSEEEECCCEEECCHHH--HHTTCCEEEETTEEEECCCTTSE-EETTEEECSTTT-C
T ss_pred             cC-CceEEEEe---CCCe--EEEeCEEEECCCcCcCchHH--HhcCCCccccCCceeeccccccC-cCCCEEEEeccC-C
Confidence            64 23334555   3676  89999999999999999876  566654  45789887 899999 999999999999 4


Q ss_pred             CCCcHHHHHHHHHHHHHHHhCC
Q psy14461        385 KPNNASMAAISARLIIERLYGM  406 (535)
Q Consensus       385 ~~~~~~~A~~~g~~aa~~i~g~  406 (535)
                       +.++..|..||++||.||.+.
T Consensus       355 -~~~~~~A~~~g~~aa~~i~~~  375 (493)
T 1y56_A          355 -IKPHYANYLEGKLVGAYILKE  375 (493)
T ss_dssp             -CCCHHHHHHHHHHHHHHHHHH
T ss_pred             -ccCHHHHHHHHHHHHHHHHHH
Confidence             567889999999999999863

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=99.92  E-value=4.8e-24  Score=225.47  Aligned_cols=174  Identities=9%  Similarity=-0.035  Sum_probs=134.1

Q ss_pred             EEEcceEEEeeCc--eecC-CCCC-C--------ceechhhHHhccC-CCCcEEEECCChHHHHHHHHHHhCCCc-EEEE
Q psy14461        205 SVTGFNFLLAVER--RCLP-EPRN-S--------ALISADDLFRLGA-WPGKTLVLGGSLMAVEIAATLNFLGVP-VTLV  270 (535)
Q Consensus       205 ~~~~d~lViATGs--~p~~-~i~G-~--------~v~~~~~~~~~~~-~~k~vvViGgG~~g~e~A~~l~~~g~~-Vtlv  270 (535)
                      ++.||+||+|||+  .|+. ++|| +        .++++.++..... .+++|+|||+|++|+|+|..|++.|.+ |+++
T Consensus       163 ~~~~d~VVvAtG~~s~p~~p~i~G~~~~~~~~~g~v~~~~~~~~~~~~~~k~VvVvG~G~sg~e~A~~l~~~~~~~V~l~  242 (447)
T 2gv8_A          163 KDIFDAVSICNGHYEVPYIPNIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQS  242 (447)
T ss_dssp             EEEESEEEECCCSSSSBCBCCCBTHHHHHHHSTTSEEEGGGCCCGGGGTTCCEEEECSSHHHHHHHHHHTTTSCSSEEEE
T ss_pred             EEEeCEEEECCCCCCCCCCCCCCChhhhhccCCccEEEecccCChhhcCCCEEEEEccCcCHHHHHHHHHHHhCCcEEEE
Confidence            6899999999998  7777 7888 2        2556655544332 579999999999999999999999999 9999


Q ss_pred             Ec-CcCCccCcHHHHHHHHHhhhcCCeEEcceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCC---
Q psy14461        271 YS-RRLLKHFDQEMVRILLSSLTKAGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAA---  346 (535)
Q Consensus       271 ~~-~~~l~~~~~~~~~~~~~~l~~~gV~i~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~---  346 (535)
                      ++ +.+               ++..||.+ ...|+++..+ ++  .|++.   +|+ ..+++|.||+|+|++|++++   
T Consensus       243 ~r~~~~---------------l~~~~i~~-~~~v~~~~~~-~~--~v~~~---dG~-~~~~~D~vi~atG~~~~~~~l~~  299 (447)
T 2gv8_A          243 LLGGGD---------------IQNESLQQ-VPEITKFDPT-TR--EIYLK---GGK-VLSNIDRVIYCTGYLYSVPFPSL  299 (447)
T ss_dssp             CTTCCS---------------CBCSSEEE-ECCEEEEETT-TT--EEEET---TTE-EECCCSEEEECCCBCCCCCCHHH
T ss_pred             eCCCCc---------------CCCCCeEE-ecCeEEEecC-CC--EEEEC---CCC-EeccCCEEEECCCCCcCCCCCcc
Confidence            98 654               44567775 4567777643 22  56673   776 23789999999999999998   


Q ss_pred             --CCcccc--CeeecCCCceEcCCCCC---cCCCCEEEeCCcCCCCCCcHHHHHHHHHHHHHHHhCCC
Q psy14461        347 --LNLHHI--GVDIKKKSYVVCNEKDQ---TSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQ  407 (535)
Q Consensus       347 --l~l~~~--gl~~~~~G~i~vd~~~~---T~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g~~  407 (535)
                        +  +.+  ++..  ++.+.++.+.+   |+.|+||++||+. .. ...+.|..||+.+|++|.|..
T Consensus       300 ~~l--~~~~~~i~~--~~~~~~~~~~~v~~~~~p~l~~~G~~~-~~-~~~~~a~~qa~~~a~~~~g~~  361 (447)
T 2gv8_A          300 AKL--KSPETKLID--DGSHVHNVYQHIFYIPDPTLAFVGLAL-HV-VPFPTSQAQAAFLARVWSGRL  361 (447)
T ss_dssp             HSC--CSTTTCCCS--SSSSCCSEETTTEETTCTTEEESSCCB-SS-CHHHHHHHHHHHHHHHHTTSS
T ss_pred             ccc--ccccCceec--CCCcccccccccccCCCCcEEEEeccc-cc-cCchHHHHHHHHHHHHHcCCC
Confidence              6  333  3333  45566665555   7899999999998 44 478899999999999999854

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=99.88  E-value=1e-21  Score=211.87  Aligned_cols=290  Identities=10%  Similarity=-0.044  Sum_probs=179.6

Q ss_pred             EEEEEeeCCccHHHHHHHHHh-hCCCeEEEEecCCcccccc---------cccccccccccchhhcccccccccccccCH
Q psy14461         88 VLYLDRIGDEGILLEEELKRQ-TNQRRDELQERGSHLSFRK---------KRRLYYPVAMSDLELEQDSTSALNVTIRNW  157 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~-~~~~~V~lie~~~~~~~~~---------~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~  157 (535)
                      .++|+|||+|++|+.+|..+. ..+.+|+|||+++.+++..         +..+...+..+ ................+.
T Consensus         8 ~~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw~~~~ypg~~~d~~s~~~~~~-~~~~~~~~~~~~~~~~~~   86 (540)
T 3gwf_A            8 TVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFS-FDRDLLQESTWKTTYITQ   86 (540)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHHHHCCCTTCEEEEEGGGSSCC-SCHHHHHHCCCSBSEEEH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCcccccCCCCceecCCcceeeec-cccccccCCCCcccCCCH
Confidence            478999999999999999887 7888999999987654221         11110000000 000000000001112234


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCc--EEEEeE-EEE--ecCC----EEEEce-eEEEcceEEEeeC--ceecC-CCC
Q psy14461        158 NAATKLIKRFCIRAKNDSMRELKALGI--DIVRTA-AAF--TNPH----TIKLSN-RSVTGFNFLLAVE--RRCLP-EPR  224 (535)
Q Consensus       158 ~~l~~~~~~~~~~~~~~~~~~~~~~gV--~~~~g~-~~~--~~~~----~v~~~~-~~~~~d~lViATG--s~p~~-~i~  224 (535)
                      .++..+..           ...++.++  ++..++ +..  .+..    +|++.+ .++.||+||+|||  ++|.. ++|
T Consensus        87 ~ei~~~l~-----------~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~~s~p~~p~ip  155 (540)
T 3gwf_A           87 PEILEYLE-----------DVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGLLSAINFPNLP  155 (540)
T ss_dssp             HHHHHHHH-----------HHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECCCSCCSBCCCCCT
T ss_pred             HHHHHHHH-----------HHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCcccccCCCCCCC
Confidence            44444333           34445565  444432 222  1222    455544 5799999999999  68888 899


Q ss_pred             C-C----c-eechhhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-Cc-CCccCc----HHHHHHHH----
Q psy14461        225 N-S----A-LISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RR-LLKHFD----QEMVRILL----  288 (535)
Q Consensus       225 G-~----~-v~~~~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~-~l~~~~----~~~~~~~~----  288 (535)
                      | +    . +++..........+|+|+|||+|.+|+|+|..|++.+.+||+++| +. ++|..+    +...+.++    
T Consensus       156 G~~~f~g~~~~~~~~~~~~~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~i~p~~~~~~~~~~~~~l~~~~~  235 (540)
T 3gwf_A          156 GLDTFEGETIHTAAWPEGKSLAGRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQYSVPVGNRPVNPEQIAEIKADYD  235 (540)
T ss_dssp             TGGGCCSEEEEGGGCCSSCCCTTSEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCCCEEECCCCBCCHHHHHHHHHTHH
T ss_pred             CccccCCCEEEeecCCCccccccceEEEECCCchHHHHHHHHHhhCCEEEEEECCCCccccCccCCCCHHHHHHHHhccH
Confidence            8 2    2 334333334445689999999999999999999999999999999 76 344332    22221111    


Q ss_pred             --------------------------------------------------------------------------------
Q psy14461        289 --------------------------------------------------------------------------------  288 (535)
Q Consensus       289 --------------------------------------------------------------------------------  288 (535)
                                                                                                      
T Consensus       236 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~dp~  315 (540)
T 3gwf_A          236 RIWERAKNSAVAFGFEESTLPAMSVSEEERNRIFQEAWDHGGGFRFMFGTFGDIATDEAANEAAASFIRAKVAEIIEDPE  315 (540)
T ss_dssp             HHHHHHHTSSSCSSSCCCCCCGGGSCHHHHHHHHHHHHHHCCHHHHHHTSCSCTTTCHHHHHHHHHHHHHHHHHHCCSHH
T ss_pred             HHHHHHHhccccccccccchhhhhCCHHHHHHHHHHHHhcccchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHcCCHH
Confidence                                                                                            


Q ss_pred             ----------------------HhhhcCCeEE-c--ceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCC
Q psy14461        289 ----------------------SSLTKAGVSI-Q--CCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFD  343 (535)
Q Consensus       289 ----------------------~~l~~~gV~i-~--~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~  343 (535)
                                            +.+.+.+|++ .  ...|++|+.+     .|.+   .+|+  ++++|.||+|||++++
T Consensus       316 ~~~~l~P~~~g~kR~~~~~~y~~~l~~~nV~lv~~~~~~I~~it~~-----gv~~---~dG~--~~~~DvIV~ATGf~~~  385 (540)
T 3gwf_A          316 TARKLMPKGLFAKRPLCDSGYYEVYNRPNVEAVAIKENPIREVTAK-----GVVT---EDGV--LHELDVLVFATGFDAV  385 (540)
T ss_dssp             HHHHHCCCSCCCSSCEEESSTGGGGGSTTEEEEETTTSCEEEECSS-----EEEE---TTCC--EEECSEEEECCCBSCS
T ss_pred             HHHhCCCCCCCccccCCCccHHHHhcCCCEEEEeCCCCCccEEecC-----eEEc---CCCC--EEECCEEEECCccCcc
Confidence                                  0122457888 4  7888888653     2555   4887  8999999999999999


Q ss_pred             CCCCCccccCeeecCCCceEcCC----------CCC-cCCCCEEEe-CCcCCCCCCcHHHHHHHHHHHHHHHh
Q psy14461        344 FAALNLHHIGVDIKKKSYVVCNE----------KDQ-TSVGNIFAV-GGIVHGKPNNASMAAISARLIIERLY  404 (535)
Q Consensus       344 ~~~l~l~~~gl~~~~~G~i~vd~----------~~~-T~~~~IyA~-GD~~~~~~~~~~~A~~~g~~aa~~i~  404 (535)
                      +.++  ...++. ..+| +.+++          .+. .+.||+|.+ |... ........+..|++.+++.|.
T Consensus       386 ~~~~--~~~~i~-g~~G-~~l~~~w~~~~~~y~g~~v~gfPN~f~~~Gp~~-~~~s~~~~~e~q~~~i~~~i~  453 (540)
T 3gwf_A          386 DGNY--RRIEIR-GRDG-LHINDHWDGQPTSYLGVSTANFPNWFMVLGPNG-PFTNLPPSIETQVEWISDTIG  453 (540)
T ss_dssp             SHHH--HTSEEE-CGGG-CBHHHHTSSSCCCBTTTBCTTCTTEEESSCSSC-BCSCHHHHHHHHHHHHHHHHH
T ss_pred             ccCc--CcceEE-CCCC-cCHHHhhccChhhccccccCCCCceEEEecCCC-CCccHHHHHHHHHHHHHHHHH
Confidence            7543  222221 1122 22221          122 378999999 8776 444566788999999998875

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=99.87  E-value=3.6e-22  Score=184.23  Aligned_cols=149  Identities=21%  Similarity=0.286  Sum_probs=128.3

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCc---------cC-----cHHHHHHHHHhhhcCCeEE-cceEEEEE
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLK---------HF-----DQEMVRILLSSLTKAGVSI-QCCVIEKV  306 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~---------~~-----~~~~~~~~~~~l~~~gV~i-~~~~v~~i  306 (535)
                      +|+|||||++|+++|..|++.|.+|+++++ +.+++         .+     ++++.+.+.+.+++.||++ .+ +++++
T Consensus         3 ~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~v~~~-~v~~i   81 (180)
T 2ywl_A            3 DVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKVKGVSRVPNYPGLLDEPSGEELLRRLEAHARRYGAEVRPG-VVKGV   81 (180)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCTTTTCSCCCCSTTCTTCCCHHHHHHHHHHHHHHTTCEEEEC-CCCEE
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccCchhhhccCCCcCCCCHHHHHHHHHHHHHHcCCEEEeC-EEEEE
Confidence            699999999999999999999999999999 65552         23     5788899999999999999 98 99999


Q ss_pred             EEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCC
Q psy14461        307 ISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKP  386 (535)
Q Consensus       307 ~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~  386 (535)
                      +.+ ++.+.+++   .+|   ++++|.||+|+|..|+.  +  +.++++++ +|+|.||++++|+.|+|||+|||+ ..+
T Consensus        82 ~~~-~~~~~v~~---~~g---~i~ad~vI~A~G~~~~~--~--~~~g~~~~-~g~i~vd~~~~t~~~~i~a~GD~~-~~~  148 (180)
T 2ywl_A           82 RDM-GGVFEVET---EEG---VEKAERLLLCTHKDPTL--P--SLLGLTRR-GAYIDTDEGGRTSYPRVYAAGVAR-GKV  148 (180)
T ss_dssp             EEC-SSSEEEEC---SSC---EEEEEEEEECCTTCCHH--H--HHHTCCEE-TTEECCCTTCBCSSTTEEECGGGG-TCC
T ss_pred             EEc-CCEEEEEE---CCC---EEEECEEEECCCCCCCc--c--ccCCCCcc-CceEEeCCCCCcCCCCEEEeeccc-Ccc
Confidence            876 34566665   245   69999999999999963  2  55678888 899999999999999999999999 665


Q ss_pred             C-cHHHHHHHHHHHHHHHhC
Q psy14461        387 N-NASMAAISARLIIERLYG  405 (535)
Q Consensus       387 ~-~~~~A~~~g~~aa~~i~g  405 (535)
                      . +++.|..||++||.||.+
T Consensus       149 ~~~~~~A~~~g~~aa~~i~~  168 (180)
T 2ywl_A          149 PGHAIISAGDGAYVAVHLVS  168 (180)
T ss_dssp             SCCHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHhHHHHHHHHHH
Confidence            5 899999999999999986

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=99.84  E-value=3.4e-20  Score=200.13  Aligned_cols=290  Identities=12%  Similarity=0.054  Sum_probs=171.4

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccccc--ccccccccccch------hhcccccccccccccCHHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKK--RRLYYPVAMSDL------ELEQDSTSALNVTIRNWNAA  160 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~--~l~~~~~~i~~~------~~~~~~~~~~~~~~~~~~~l  160 (535)
                      ++|+|||+|++|+.+|..+...+.+|+|||+++.+++...  ..|.....++..      ..+............+..++
T Consensus        10 ~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~~~~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~~~~~~~ei   89 (545)
T 3uox_A           10 LDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKGIIPEWEWSENFASQPEM   89 (545)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCHHHHCHHHHTTSSTTCCCSBSSCBHHHH
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCceeecCchhhcccccCcccccCCCccccCCCHHHH
Confidence            6899999999999999988888899999999876543210  011000000000      00000000111222344455


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCc--EEEEe-E---EEEecC-C--EEEEce-eEEEcceEEEeeC--ceecC-CCCC-C
Q psy14461        161 TKLIKRFCIRAKNDSMRELKALGI--DIVRT-A---AAFTNP-H--TIKLSN-RSVTGFNFLLAVE--RRCLP-EPRN-S  226 (535)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~gV--~~~~g-~---~~~~~~-~--~v~~~~-~~~~~d~lViATG--s~p~~-~i~G-~  226 (535)
                      ..+.+..           .++.++  .+..+ +   +.+.+. .  +|++.+ .++.||+||+|||  ++|.. ++|| +
T Consensus        90 ~~yl~~~-----------~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG~~s~p~~p~ipG~~  158 (545)
T 3uox_A           90 LRYVNRA-----------ADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGPLSASRMPDIKGID  158 (545)
T ss_dssp             HHHHHHH-----------HHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTEEEEEEEEEECCCSCBC---CCCTTGG
T ss_pred             HHHHHHH-----------HHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCCEEEeCEEEECcCCCCCCcCCCCCCcc
Confidence            5444422           233333  22222 1   122221 2  555544 6899999999999  88888 8998 2


Q ss_pred             -----ceechhhHHh-------ccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcC-CccCc----HHHHHHH-
Q psy14461        227 -----ALISADDLFR-------LGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRL-LKHFD----QEMVRIL-  287 (535)
Q Consensus       227 -----~v~~~~~~~~-------~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~-l~~~~----~~~~~~~-  287 (535)
                           .+++......       ....+|+|+|||+|.+|+|+|..|++.+.+||+++| +.+ +|..+    +...+.+ 
T Consensus       159 ~f~g~~~h~~~~~~~~~~~~~~~~~~~krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~~i~p~~~~~~~~~~~~~l~  238 (545)
T 3uox_A          159 SFKGESFHSSRWPTDAEGAPKGVDFTGKRVGVIGTGATGVQIIPIAAETAKELYVFQRTPNWCTPLGNSPMSKEKMDSLR  238 (545)
T ss_dssp             GCCSEEEEGGGCCBCTTSCBSCCCCBTCEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCCCCEECCCCBCCHHHHHHHH
T ss_pred             ccCCCeEEcccccccccccccccccCCCeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCCccccCCcCCCCHHHHHHHH
Confidence                 2344433333       344579999999999999999999999999999999 763 44322    1111111 


Q ss_pred             --------------------------------------------------------------------------------
Q psy14461        288 --------------------------------------------------------------------------------  287 (535)
Q Consensus       288 --------------------------------------------------------------------------------  287 (535)
                                                                                                      
T Consensus       239 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~e~r~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  318 (545)
T 3uox_A          239 NRYPTILEYVKSTDTAFPYHRDPRKGTDVSESERDAFFEELYRQPGYGIWLSGFRDLLLNKESNKFLADFVAKKIRQRVK  318 (545)
T ss_dssp             HTHHHHHHHHTTSSSSSSCCCBSSCGGGSCHHHHHHHHHHHHHSSSTHHHHTSBTTTTTCHHHHHHHHHHHHHHHHHHCS
T ss_pred             hhhHHHHHHHhhcccccccccccchhhhCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhcCHHHHHHHHHHHHHHHHHHcC
Confidence                                                                                            


Q ss_pred             --------------------------HHhhhcCCeEE-c--ceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEcc
Q psy14461        288 --------------------------LSSLTKAGVSI-Q--CCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAM  338 (535)
Q Consensus       288 --------------------------~~~l~~~gV~i-~--~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~  338 (535)
                                                .+.|.+.+|++ .  ...|++|+.+     .|.+   .+|   ++++|.||+||
T Consensus       319 d~~~~~~l~P~~~~~g~kR~~~~~~y~~al~~~nV~lv~~~~~~I~~it~~-----gv~~---~dG---~~~~D~IV~AT  387 (545)
T 3uox_A          319 DPVVAEKLIPKDHPFGAKRVPMETNYYETYNRDNVHLVDIREAPIQEVTPE-----GIKT---ADA---AYDLDVIIYAT  387 (545)
T ss_dssp             CHHHHHHTSCSSSCTTSSCCCEESSHHHHTTSTTEEEEETTTSCEEEEETT-----EEEE---SSC---EEECSEEEECC
T ss_pred             CHHHHHhCCCCCCCCCCCccCCCccHHHHhcCCCEEEEecCCCCceEEccC-----eEEe---CCC---eeecCEEEECC
Confidence                                      01122337777 4  7788888743     2555   366   58999999999


Q ss_pred             CCCCCCCCCCccccCeeecCCCceEcCCC-----------CCcCCCCEEEeCCcCC--CCCCcHHHHHHHHHHHHHHHh
Q psy14461        339 EKKFDFAALNLHHIGVDIKKKSYVVCNEK-----------DQTSVGNIFAVGGIVH--GKPNNASMAAISARLIIERLY  404 (535)
Q Consensus       339 G~~p~~~~l~l~~~gl~~~~~G~i~vd~~-----------~~T~~~~IyA~GD~~~--~~~~~~~~A~~~g~~aa~~i~  404 (535)
                      |+.+++.++  ....+. +.+| ..+++.           +-.+.||+|.+.--..  +.......+..|++.+++.|.
T Consensus       388 Gf~~~~~~~--~~~~i~-g~~G-~~l~~~w~~~~~~y~g~~~~gfPN~f~~~gp~~~~~~~s~~~~~e~~~~~i~~~i~  462 (545)
T 3uox_A          388 GFDAVTGSL--DRIDIR-GKDN-VRLIDAWAEGPSTYLGLQARGFPNFFTLVGPHNGSTFCNVGVCGGLQAEWVLRMIS  462 (545)
T ss_dssp             CCBSSSCSC--TTSEEE-CGGG-CBHHHHTTTSCCCBTTTBCTTCTTEEECSSGGGTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccC--CCceEE-CCCC-ccHHHhhccccceeeccccCCCCcEEEEeCCCCCCccccHHHHHHHHHHHHHHHHH
Confidence            999987655  222221 2233 333321           1237899999854331  123556678999999998885

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=99.82  E-value=4.5e-19  Score=191.57  Aligned_cols=179  Identities=7%  Similarity=-0.037  Sum_probs=110.6

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccc---------cccccccccccchhhcccccccccccccCHH
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRK---------KRRLYYPVAMSDLELEQDSTSALNVTIRNWN  158 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~---------~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~  158 (535)
                      .++|+|||+|++|+.+|..+...+.+|+|||+++.+++..         +..+...+..+ ................+..
T Consensus        21 ~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~~~-f~~~~~~~~~~~~~~~~~~   99 (549)
T 4ap3_A           21 SYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYS-FSPELEQEWNWSEKYATQP   99 (549)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCC-SCHHHHHHCCCSSSSCBHH
T ss_pred             CCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCCceeCCCchhcccc-cccccccCCCCccCCCCHH
Confidence            4789999999999999998888889999999987654211         11111100000 0000000000111223444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCc--EEEEe-EEEEe--cCC----EEEEce-eEEEcceEEEeeC--ceecC-CCCC
Q psy14461        159 AATKLIKRFCIRAKNDSMRELKALGI--DIVRT-AAAFT--NPH----TIKLSN-RSVTGFNFLLAVE--RRCLP-EPRN  225 (535)
Q Consensus       159 ~l~~~~~~~~~~~~~~~~~~~~~~gV--~~~~g-~~~~~--~~~----~v~~~~-~~~~~d~lViATG--s~p~~-~i~G  225 (535)
                      ++..+..           ...++.++  ++..+ ++...  +..    +|++.+ .++.||+||+|||  ++|.. ++||
T Consensus       100 ei~~yl~-----------~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~~s~p~~p~ipG  168 (549)
T 4ap3_A          100 EILAYLE-----------HVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGPLSNANTPAFDG  168 (549)
T ss_dssp             HHHHHHH-----------HHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSEEECCCCCCTT
T ss_pred             HHHHHHH-----------HHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEECcCCCCCCCCCCCCC
Confidence            4444443           33444454  34333 22221  222    565544 5799999999999  88888 8999


Q ss_pred             -C----ceechhhHH--hccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcC-Ccc
Q psy14461        226 -S----ALISADDLF--RLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRL-LKH  278 (535)
Q Consensus       226 -~----~v~~~~~~~--~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~-l~~  278 (535)
                       +    .+++.....  .....+|+|+|||+|.+|+|+|..|++.+.+||+++| +.+ +|.
T Consensus       169 ~~~f~g~~~~~~~~~~~~~~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~ilp~  230 (549)
T 4ap3_A          169 LDRFTGDIVHTARWPHDGVDFTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSANYSIPA  230 (549)
T ss_dssp             GGGCCSEEEEGGGCCTTCCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCCEEEC
T ss_pred             cccCCCceEEeccccccccccCCCEEEEECCCchHHHHHHHHHhhCCEEEEEECCCCccccC
Confidence             2    233333222  2334579999999999999999999999999999999 763 443

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=99.79  E-value=3.8e-18  Score=184.47  Aligned_cols=295  Identities=11%  Similarity=0.041  Sum_probs=172.4

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccccc--ccccccccccchhh--cccc----cccccccccCHHH
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKK--RRLYYPVAMSDLEL--EQDS----TSALNVTIRNWNA  159 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~--~l~~~~~~i~~~~~--~~~~----~~~~~~~~~~~~~  159 (535)
                      .++|+|||+|++|+.+|+.+...+.+|+|||+++.+++...  ..|..........-  .+.+    .........+..+
T Consensus        16 ~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w~~~~~pg~~~d~~~~~~~~~f~~~~~~~~~~~~~~~~~~~   95 (542)
T 1w4x_A           16 EVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPE   95 (542)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHHH
T ss_pred             CCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccccCCCceeecccccccccccChhhhhccCcccccCCHHH
Confidence            57899999999999999988888899999999886542210  01100000000000  0000    0000111233444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCcEEEEeE----EEEecC-C--EEEEce-eEEEcceEEEeeC--ceecC-CCCC-C-
Q psy14461        160 ATKLIKRFCIRAKNDSMRELKALGIDIVRTA----AAFTNP-H--TIKLSN-RSVTGFNFLLAVE--RRCLP-EPRN-S-  226 (535)
Q Consensus       160 l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~----~~~~~~-~--~v~~~~-~~~~~d~lViATG--s~p~~-~i~G-~-  226 (535)
                      +.++.+...+++.         .++++..++    +.+.+. .  +|++.+ .++.||+||+|||  +.|.. ++|| + 
T Consensus        96 i~~yl~~~~~~~~---------l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~vV~AtG~~s~p~~p~i~G~~~  166 (542)
T 1w4x_A           96 ILRYINFVADKFD---------LRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSVPQLPNFPGLKD  166 (542)
T ss_dssp             HHHHHHHHHHHTT---------GGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCCCCCCCCCTTGGG
T ss_pred             HHHHHHHHHHHcC---------CCceEEcCcEEEEEEEcCCCCeEEEEECCCCEEEeCEEEECcCCCCCCCCCCCCCccc
Confidence            4444433222221         012233221    222222 2  455543 5799999999999  56776 7888 2 


Q ss_pred             --c--eechhhHHh-ccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcC-CccC----cHHHHHH---------
Q psy14461        227 --A--LISADDLFR-LGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRL-LKHF----DQEMVRI---------  286 (535)
Q Consensus       227 --~--v~~~~~~~~-~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~-l~~~----~~~~~~~---------  286 (535)
                        +  +++...... ....+|+|+|||+|.+|+|+|..|++.+.+|+++.| +.+ +|..    .++..+.         
T Consensus       167 f~G~~~hs~~~~~~~~~~~gk~V~VIG~G~sg~e~a~~l~~~~~~vtv~~r~~~~~~p~~~~~~~~~~~~~~~~~~p~l~  246 (542)
T 1w4x_A          167 FAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPHFAVPARNAPLDPEFLADLKKRYAEFR  246 (542)
T ss_dssp             CCSEEEEGGGCCSSCCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCCEEECCCCBCCHHHHHHHHTTHHHHH
T ss_pred             CCCceEECCCCCCchhccCCCEEEEECCCccHHHHHHHHhhcCceEEEEEcCCcccccCCCCCCCHHHHHHHHhhCHHHH
Confidence              1  333321111 233579999999999999999999999999999998 655 2321    1111100         


Q ss_pred             --------------------------------------------------------------HHH---------------
Q psy14461        287 --------------------------------------------------------------LLS---------------  289 (535)
Q Consensus       287 --------------------------------------------------------------~~~---------------  289 (535)
                                                                                    +++               
T Consensus       247 ~~~~~~~~G~~~~~d~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  326 (542)
T 1w4x_A          247 EESRNTPGGTHRYQGPKSALEVSDEELVETLERYWQEGGPDILAAYRDILRDRDANERVAEFIRNKIRNTVRDPEVAERL  326 (542)
T ss_dssp             HHHHTSSSSSCCCCCCSCTTTSCHHHHHHHHHHHHHHCSGGGGGSSTTTTTCHHHHHHHHHHHHHHHHHHCSSHHHHHHH
T ss_pred             HHHHhhccccccCccccchhcCCHHHHHHHHHHHHhhcchHHHHHHHHHhcChHHHHHHHHHHHHHHHHHcCCHHHHHhc
Confidence                                                                          000               


Q ss_pred             --------------------hhhcCCeEEc---ceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCC
Q psy14461        290 --------------------SLTKAGVSIQ---CCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAA  346 (535)
Q Consensus       290 --------------------~l~~~gV~i~---~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~  346 (535)
                                          .+.+.+|++.   +..|++|+.+     .|.+.   | +  ++++|.||+|||+++++.+
T Consensus       327 ~P~~~~~~~kr~~~~~~y~~~~~~~~v~lv~~~~~~i~~i~~~-----gv~~~---d-~--~~~~D~ii~atG~~~~~~~  395 (542)
T 1w4x_A          327 VPKGYPFGTKRLILEIDYYEMFNRDNVHLVDTLSAPIETITPR-----GVRTS---E-R--EYELDSLVLATGFDALTGA  395 (542)
T ss_dssp             SCCSSCSSSSCCEEESSHHHHTTSTTEEEEETTTSCEEEECSS-----EEEES---S-C--EEECSEEEECCCCCCTTHH
T ss_pred             CCCCCCccccCCCCCccHHHHhCCCCEEEEecCCCCceEEcCC-----eEEeC---C-e--EEecCEEEEcCCccccccC
Confidence                                0112345552   5567776532     25552   5 5  8999999999999998765


Q ss_pred             CCccccCeeecCCCceEcC-------CC--CC-cCCCCEEEe-CCcCC-CCCCcHHHHHHHHHHHHHHHhC
Q psy14461        347 LNLHHIGVDIKKKSYVVCN-------EK--DQ-TSVGNIFAV-GGIVH-GKPNNASMAAISARLIIERLYG  405 (535)
Q Consensus       347 l~l~~~gl~~~~~G~i~vd-------~~--~~-T~~~~IyA~-GD~~~-~~~~~~~~A~~~g~~aa~~i~g  405 (535)
                      +  ...++. +.+|....+       .+  +. ...||+|++ |+.+. +.+.....|..|++.+|++|..
T Consensus       396 ~--~~~~i~-g~~G~~l~~~w~~~~~~y~~~~v~~~Pn~f~~~G~~~~~~~~~~~~~~e~q~~~ia~~i~~  463 (542)
T 1w4x_A          396 L--FKIDIR-GVGNVALKEKWAAGPRTYLGLSTAGFPNLFFIAGPGSPSALSNMLVSIEQHVEWVTDHIAY  463 (542)
T ss_dssp             H--HTSEEE-CGGGCBHHHHTTTSCCCBTTTBCTTSTTEEESSCTTSSGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred             c--CceeeE-CCCCCCHHHhhcCchheecccccCCCCceEEEcCCCCCcccccHHHHHHHHHHHHHHHHHH
Confidence            4  333332 234533332       12  22 378999998 99852 3455668899999999999974

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=99.72  E-value=8.3e-16  Score=164.44  Aligned_cols=200  Identities=13%  Similarity=0.058  Sum_probs=126.2

Q ss_pred             eEEEcceEEEeeCceecC-CCCC--CceechhhHHh-------ccCCCCcEEEECCChHHHHHHHHHHhC--CCcEEEEE
Q psy14461        204 RSVTGFNFLLAVERRCLP-EPRN--SALISADDLFR-------LGAWPGKTLVLGGSLMAVEIAATLNFL--GVPVTLVY  271 (535)
Q Consensus       204 ~~~~~d~lViATGs~p~~-~i~G--~~v~~~~~~~~-------~~~~~k~vvViGgG~~g~e~A~~l~~~--g~~Vtlv~  271 (535)
                      .++.+++||+|||..|.. +.++  ..++++.++..       ....+|+|+|||+|.+|+|++..|++.  +.+|+++.
T Consensus       199 ~~~~ar~vVlatG~~P~iP~~~~~~g~v~Hss~y~~~~~~~~~~~~~gKrV~VVG~G~SA~ei~~~L~~~~~~~~v~~~~  278 (501)
T 4b63_A          199 SARRTRKVVIAIGGTAKMPSGLPQDPRIIHSSKYCTTLPALLKDKSKPYNIAVLGSGQSAAEIFHDLQKRYPNSRTTLIM  278 (501)
T ss_dssp             EEEEEEEEEECCCCEECCCTTSCCCTTEEEGGGHHHHHHHHSCCTTSCCEEEEECCSHHHHHHHHHHHHHSTTCEEEEEC
T ss_pred             EEEEeCEEEECcCCCCCCCCCCCCCcceeeccccccchhhccccccCCcEEEEECCcHHHHHHHHHHHhcCCCceEEEEe
Confidence            568999999999999977 4443  45666655543       123578999999999999999999865  68999999


Q ss_pred             c-CcCCcc---------CcHH-----------HHH--------------------HHHHhhh----------cCCeEE-c
Q psy14461        272 S-RRLLKH---------FDQE-----------MVR--------------------ILLSSLT----------KAGVSI-Q  299 (535)
Q Consensus       272 ~-~~~l~~---------~~~~-----------~~~--------------------~~~~~l~----------~~gV~i-~  299 (535)
                      | +.+.|.         +.++           ...                    .+.+.+.          .....+ .
T Consensus       279 R~~~~~p~~~s~~~~~~f~p~~~~~f~~l~~~~r~~~~~~~~~~~~~~v~~~li~~i~~~~y~~~~~~~~~~~~~~~l~~  358 (501)
T 4b63_A          279 RDSAMRPSDDSPFVNEIFNPERVDKFYSQSAAERQRSLLADKATNYSVVRLELIEEIYNDMYLQRVKNPDETQWQHRILP  358 (501)
T ss_dssp             SSSSCCBCCCCTTGGGGGSTTHHHHHHTSCHHHHHHHHHHTGGGTSSCBCHHHHHHHHHHHHHHHHHCSCGGGCSSEEEC
T ss_pred             CCCccccccccccchhhcCHHHHHHHHhCCHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHhhccCCCcccccceeecC
Confidence            8 655432         1111           111                    1111110          112345 6


Q ss_pred             ceEEEEEEEeC-CCcEEEEEec---------CCCCCceEEEcCEEEEccCCCCCCCC-CCccccCeeecCCCceEcCCCC
Q psy14461        300 CCVIEKVISSF-DGMKGVRGFH---------PESKEPFADVFKTVVNAMEKKFDFAA-LNLHHIGVDIKKKSYVVCNEKD  368 (535)
Q Consensus       300 ~~~v~~i~~~~-~~~~~v~~~~---------~~~G~~~~~~~D~vi~a~G~~p~~~~-l~l~~~gl~~~~~G~i~vd~~~  368 (535)
                      +..+..+.... .+.+.+....         ..+|+  ++++|.||+|||++|+... |.-....+..|.+|.+.|+..+
T Consensus       359 ~~~v~~~~~~~~~~~~~v~~~~~~~~~~~v~~~dg~--~~~~D~VI~ATGy~~~~p~~L~~~~~~l~~d~~g~~~v~rdy  436 (501)
T 4b63_A          359 ERKITRVEHHGPQSRMRIHLKSSKPESEGAANDVKE--TLEVDALMVATGYNRNAHERLLSKVQHLRPTGQDQWKPHRDY  436 (501)
T ss_dssp             SEEEEEEECCSSSSCEEEEEEESCC--------CCC--EEEESEEEECCCEECCTHHHHTGGGGGGSSTTCCSCCBCTTS
T ss_pred             CcceeeeeecCCCCeEEEEeeeeEEeCCeeEeCCCe--EEECCEEEECcCCCCCCcchhcchhhhcCcCcCCCeeeCCCc
Confidence            66776665431 2334443321         13566  8999999999999998642 1001113556777888888765


Q ss_pred             Cc--------CCCCEEEeCCcCC----CCCCcHHHHHHHHHHHHHHHhCC
Q psy14461        369 QT--------SVGNIFAVGGIVH----GKPNNASMAAISARLIIERLYGM  406 (535)
Q Consensus       369 ~T--------~~~~IyA~GD~~~----~~~~~~~~A~~~g~~aa~~i~g~  406 (535)
                      +.        ..++||+.|-+.+    +.+.+...|.+.|+++ +.|+|+
T Consensus       437 ~~~~~~~~~~~~~~i~~qg~~~~thG~~~~~Ls~~a~R~~~I~-~~l~g~  485 (501)
T 4b63_A          437 RVEMDPSKVSSEAGIWLQGCNERTHGLSDSLLSVLAVRGGEMV-QSIFGE  485 (501)
T ss_dssp             BBCCCTTTBCTTCEEEECSCCHHHHCTTTTSSTTHHHHHHHHH-HHHHHH
T ss_pred             EEeecCCccCCCceEEecCCCcccCCcchhhHHHHHHHHHHHH-HHHhcc
Confidence            42        2467999995432    3466777899988765 556664

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=99.54  E-value=1.7e-15  Score=160.88  Aligned_cols=206  Identities=11%  Similarity=0.075  Sum_probs=122.8

Q ss_pred             HHHHHHhcCcEEEEeE-EEE-ecCCEE---EE--ceeEEEcceEEEeeCceecC-CCCC-CceechhhHH----------
Q psy14461        175 SMRELKALGIDIVRTA-AAF-TNPHTI---KL--SNRSVTGFNFLLAVERRCLP-EPRN-SALISADDLF----------  235 (535)
Q Consensus       175 ~~~~~~~~gV~~~~g~-~~~-~~~~~v---~~--~~~~~~~d~lViATGs~p~~-~i~G-~~v~~~~~~~----------  235 (535)
                      +.+.++..||+++.++ +.+ .++..+   .+  .+.++.+|.||+|||+.+.. +++. +...+.+.+.          
T Consensus       125 L~~~~~~~gv~i~~~~~v~l~~~~~~v~Gv~v~~~~g~~~a~~VVlAtGg~~~~~~~~~~~~~~tGdgi~~a~~aGa~~~  204 (472)
T 2e5v_A          125 LLKLAREEGIPIIEDRLVEIRVKDGKVTGFVTEKRGLVEDVDKLVLATGGYSYLYEYSSTQSTNIGDGMAIAFKAGTILA  204 (472)
T ss_dssp             HHHHHHHTTCCEECCCEEEEEEETTEEEEEEETTTEEECCCSEEEECCCCCGGGSSSBSSCTTCSCHHHHHHHHTTCCEE
T ss_pred             HHHHHHhCCCEEEECcEEEEEEeCCEEEEEEEEeCCCeEEeeeEEECCCCCcccCccccCCCCCchHHHHHHHHcCCCEe
Confidence            3344566799998775 422 234443   34  23567899999999998766 5432 2223333321          


Q ss_pred             hccCCC--CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHH--------HHHHHHhhhcCCeEEcceEEE
Q psy14461        236 RLGAWP--GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEM--------VRILLSSLTKAGVSIQCCVIE  304 (535)
Q Consensus       236 ~~~~~~--k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~--------~~~~~~~l~~~gV~i~~~~v~  304 (535)
                      .+....  ..++++|+|  +++++..++..|..+ +..+ +++++.++++.        ...+.+.+++.|.-+.+.+  
T Consensus       205 d~e~~q~~p~~~~~ggg--~~~~ae~~~~~G~~~-v~~~g~rf~~~~~~~~el~~rd~v~~~i~~~~~~~~~v~ld~~--  279 (472)
T 2e5v_A          205 DMEFVQFHPTVTSLDGE--VFLLTETLRGEGAQI-INENGERFLFNYDKRGELAPRDILSRAIYIEMLKGHKVFIDLS--  279 (472)
T ss_dssp             CTTCEEEEEEEECGGGC--CEECCTHHHHTTCEE-EETTCCCGGGGTCTTGGGSCHHHHHHHHHHHHHHTCCEEEECT--
T ss_pred             CCcceEEEeEEEccCCC--ceeeehhhcCCceEE-ECCCCCCCCccCCcccCcCchhHHHHHHHHHHHhCCcEEEecc--
Confidence            111111  134556776  888999999999877 6666 88886555432        5555666655442111100  


Q ss_pred             EEEEeCCCcEEEEEecCCCCCceEEE-cCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCC
Q psy14461        305 KVISSFDGMKGVRGFHPESKEPFADV-FKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVH  383 (535)
Q Consensus       305 ~i~~~~~~~~~v~~~~~~~G~~~~~~-~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~  383 (535)
                         .. +.     +.       ..++ .|.++++.|..|+ +.+..  .+......|.|.||+++||++|||||+|||+ 
T Consensus       280 ---~~-~~-----~~-------~~~~~~~~~~~~~G~dp~-~~i~v--~p~~~~~~GGI~vd~~~~t~ipgLyAaGd~a-  339 (472)
T 2e5v_A          280 ---KI-ED-----FE-------RKFPVVAKYLARHGHNYK-VKIPI--FPAAHFVDGGIRVNIRGESNIVNLYAIGEVS-  339 (472)
T ss_dssp             ---TC-TT-----HH-------HHCHHHHHHHHHTTCCTT-SCEEC--EEEEEEESCEEECCTTCBCSSBTEEECGGGE-
T ss_pred             ---ch-HH-----HH-------HHhHHHHHHHHHhCcCcc-cceEe--ehhhceeCCCeEECCCCccccCCEEecchhc-
Confidence               00 00     10       0233 4667888999999 65522  2222233688999999999999999999998 


Q ss_pred             C-CC----CcHHHHHHH----HHHHHHHHhC
Q psy14461        384 G-KP----NNASMAAIS----ARLIIERLYG  405 (535)
Q Consensus       384 ~-~~----~~~~~A~~~----g~~aa~~i~g  405 (535)
                      + +.    .+...|..+    |+.|++++.+
T Consensus       340 ~~~~hg~~rl~~~sl~~~~v~G~~a~~~~a~  370 (472)
T 2e5v_A          340 DSGLHGANRLASNSLLEGLVFGINLPRYVDS  370 (472)
T ss_dssp             ECSSSTTSCCTTHHHHHHHHHHHHGGGTTTS
T ss_pred             ccccCCCCCCCcccHHHHHHHHHHHHHHHHh
Confidence            4 22    466666665    5555555554

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=99.49  E-value=1.2e-13  Score=132.36  Aligned_cols=156  Identities=17%  Similarity=0.122  Sum_probs=107.8

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcC-----------------CccC-------cHHHHHHHHHhhhcC-C
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRL-----------------LKHF-------DQEMVRILLSSLTKA-G  295 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~-----------------l~~~-------~~~~~~~~~~~l~~~-g  295 (535)
                      -+|+|||||++|+++|..|++.|.+|+++++ ...                 +..+       ..++.+.+.+.+++. |
T Consensus         4 ~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~~G~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~l~~~~~~~~g   83 (232)
T 2cul_A            4 YQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEGLRP   83 (232)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHTCTT
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCcCCcccCccccccchhhHHhhhccCCCCCHHHHHHHHHHHHHcCCC
Confidence            4799999999999999999999999999998 321                 1111       236677788888886 9


Q ss_pred             eEEcceEEEEEEEeCCCcE-EEEEecCCCCCceEEEcCEEEEccCCCCCCCCC-C--------------------ccccC
Q psy14461        296 VSIQCCVIEKVISSFDGMK-GVRGFHPESKEPFADVFKTVVNAMEKKFDFAAL-N--------------------LHHIG  353 (535)
Q Consensus       296 V~i~~~~v~~i~~~~~~~~-~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l-~--------------------l~~~g  353 (535)
                      +++.+.+++++..+ ++.+ .|.+   .+|+  ++++|.||+|+|..++.... +                    +...+
T Consensus        84 v~i~~~~v~~i~~~-~~~v~~v~~---~~g~--~i~a~~VV~A~G~~s~~~~~~G~~~~~~g~~g~~~~~~l~~~l~~~g  157 (232)
T 2cul_A           84 LHLFQATATGLLLE-GNRVVGVRT---WEGP--PARGEKVVLAVGSFLGARLFLGGVVEEAGRLSEASYPDLLEDLSRLG  157 (232)
T ss_dssp             EEEEECCEEEEEEE-TTEEEEEEE---TTSC--CEECSEEEECCTTCSSCEEEETTEEESEEETTEECCSHHHHHHHHTT
T ss_pred             cEEEEeEEEEEEEe-CCEEEEEEE---CCCC--EEECCEEEECCCCChhhceecCCccCCCCCCcccchhhhCHHHHhCC
Confidence            99933589999876 4544 4555   3676  79999999999995543210 0                    01222


Q ss_pred             eeecCC--------Cc-------eEcC-------CCCCcCCCCEEEeCCcCCCCCCcHHHHHHHHHHHHHHHhC
Q psy14461        354 VDIKKK--------SY-------VVCN-------EKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYG  405 (535)
Q Consensus       354 l~~~~~--------G~-------i~vd-------~~~~T~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g  405 (535)
                      ++++..        |.       ..+.       ....|+.|+|||+|||+ . ......|+.||+.+|.+|..
T Consensus       158 ~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~t~~p~iya~G~~a-~-~g~~~~~~~~g~~~a~~i~~  229 (232)
T 2cul_A          158 FRFVEREGEVPETPSTPGYRVRYLAFHPEEWEEKTFRLKRLEGLYAVGLCV-R-EGDYARMSEEGKRLAEHLLH  229 (232)
T ss_dssp             CCEEEEEEEEC-----CCEEEEEEEECGGGEETTTTEETTSBSEEECGGGT-S-CCCHHHHHHHHHHHHHHHHH
T ss_pred             CeEEccccccCcCCCCCCccCchhhcccCCCCCccccccccccceeeeecc-c-CccHHHHHHHHHHHHHHHHh
Confidence            222210        00       0011       01137999999999999 4 44777899999999999974

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=99.29  E-value=9.2e-13  Score=136.74  Aligned_cols=187  Identities=10%  Similarity=-0.001  Sum_probs=100.0

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccc-------cccccccccccccchhhcccccccccccccCHHHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSF-------RKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAAT  161 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~-------~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~  161 (535)
                      ++|+|||+|++|+.+|+.+...+.+|+|+|+++.++.       ..|.+..............+.+........+..++.
T Consensus         5 ~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   84 (401)
T 2gqf_A            5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNWDFI   84 (401)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHHHHH
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccCCHHHHHHHHHhCCHHHHH
Confidence            5789999999999999999888999999999875421       111111000000000000000000000000111111


Q ss_pred             HHHHH-----------------HHHHHHHHHHHHHHhcCcEEEEeEEE--Ee-c----CCE--EEEceeEEEcceEEEee
Q psy14461        162 KLIKR-----------------FCIRAKNDSMRELKALGIDIVRTAAA--FT-N----PHT--IKLSNRSVTGFNFLLAV  215 (535)
Q Consensus       162 ~~~~~-----------------~~~~~~~~~~~~~~~~gV~~~~g~~~--~~-~----~~~--v~~~~~~~~~d~lViAT  215 (535)
                      ++..+                 ....+...+...+++.||+++.++..  +. +    +..  |.+.+.++.+|+||+||
T Consensus        85 ~~~~~~Gi~~~~~~~g~~~p~~~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~~~v~~~~g~i~ad~VVlAt  164 (401)
T 2gqf_A           85 SLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIVAT  164 (401)
T ss_dssp             HHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTEEEEESEEEECC
T ss_pred             HHHHhCCCceEECcCCEEccCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCeEEEEECCCEEECCEEEECC
Confidence            11110                 01222233445667789999887532  22 3    333  33344579999999999


Q ss_pred             CceecC---------------------CCCC-Cce-echhh-H---HhccCCCCcEEEEC---------------CChHH
Q psy14461        216 ERRCLP---------------------EPRN-SAL-ISADD-L---FRLGAWPGKTLVLG---------------GSLMA  253 (535)
Q Consensus       216 Gs~p~~---------------------~i~G-~~v-~~~~~-~---~~~~~~~k~vvViG---------------gG~~g  253 (535)
                      |+.+..                     +.|+ ..+ ++..+ +   +.....+.++.|+|               +|+++
T Consensus       165 G~~s~p~~g~~G~g~~la~~~G~~i~~~~p~l~~~~~~~~~~~~~~l~g~~~~~~~~i~G~~~~~g~~l~t~~g~sG~~~  244 (401)
T 2gqf_A          165 GGLSMPGLGATPFGYQIAEQFGIPVIPPRASLVPFTYRETDKFLTALSGISLPVTITALCGKSFYNQLLFTHRGISGPAV  244 (401)
T ss_dssp             CCSSCGGGTCCSHHHHHHHHTTCCEEEEEEESCCEECCGGGGGGGGGTTCEEEEEEEETTSCEEEEEEEECSSEEESHHH
T ss_pred             CCccCCCCCCChHHHHHHHHCCCCcccCcceeeceecCCchhhcccCCCeeeeeEEEEcCCceEEeCEEEECCCccHHHH
Confidence            987721                     1233 112 23333 3   22223355666669               89999


Q ss_pred             HHHHHHHHhCCCcEEEEEcCcCCccCc
Q psy14461        254 VEIAATLNFLGVPVTLVYSRRLLKHFD  280 (535)
Q Consensus       254 ~e~A~~l~~~g~~Vtlv~~~~~l~~~~  280 (535)
                      ++++..+++ |.+|++    .++|.++
T Consensus       245 l~~s~~~~~-~~~~~i----~~~p~~~  266 (401)
T 2gqf_A          245 LQISNYWQP-TESVEI----DLLPNHN  266 (401)
T ss_dssp             HHHTTTCCT-TCCEEE----ESCSSSC
T ss_pred             HHHHHHHhc-CCEEEE----ECCCCCC
Confidence            999998866 777775    3455544

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=99.22  E-value=4e-11  Score=118.47  Aligned_cols=161  Identities=17%  Similarity=0.134  Sum_probs=108.8

Q ss_pred             CcEEEECCChHHHHHHHHHHhC-CCcEEEEEc-CcCCcc--------------------------------------CcH
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFL-GVPVTLVYS-RRLLKH--------------------------------------FDQ  281 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~-g~~Vtlv~~-~~~l~~--------------------------------------~~~  281 (535)
                      .+|+|||||++|+.+|..|++. |.+|+++++ +.+...                                      ...
T Consensus        40 ~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  119 (284)
T 1rp0_A           40 TDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHAA  119 (284)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESCHH
T ss_pred             cCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCceecCCcchHHHHcCcHHHHHHHHcCCCcccCCCEEEecCHH
Confidence            4799999999999999999997 999999998 644210                                      124


Q ss_pred             HHHHHHHHhhhc-CCeEE-cceEEEEEEEeCCCcE-EEEEec------CCC---CCceEEEcCEEEEccCCCCCCCCCCc
Q psy14461        282 EMVRILLSSLTK-AGVSI-QCCVIEKVISSFDGMK-GVRGFH------PES---KEPFADVFKTVVNAMEKKFDFAALNL  349 (535)
Q Consensus       282 ~~~~~~~~~l~~-~gV~i-~~~~v~~i~~~~~~~~-~v~~~~------~~~---G~~~~~~~D~vi~a~G~~p~~~~l~l  349 (535)
                      ++...+.+.+.+ .||++ .+++++++..+ ++++ .|.+..      ..+   |+..++++|.||+|+|..++...+..
T Consensus       120 ~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~-~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG~~s~~~~~~~  198 (284)
T 1rp0_A          120 LFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPFGATGV  198 (284)
T ss_dssp             HHHHHHHHHHHTSTTEEEEETEEEEEEEEE-TTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSSTTTTHHH
T ss_pred             HHHHHHHHHHHhcCCCEEEcCcEEEEEEec-CCeEEEEEEeccccccccCccccCceEEEECCEEEECCCCchHHHHHHH
Confidence            455556666654 79999 99999999876 4544 344421      001   34458999999999998887543211


Q ss_pred             cc-------cCeeecCCCceEcCC-------CCCcCCCCEEEeCCcCC---CCCC---cHHHHHHHHHHHHHHHhC
Q psy14461        350 HH-------IGVDIKKKSYVVCNE-------KDQTSVGNIFAVGGIVH---GKPN---NASMAAISARLIIERLYG  405 (535)
Q Consensus       350 ~~-------~gl~~~~~G~i~vd~-------~~~T~~~~IyA~GD~~~---~~~~---~~~~A~~~g~~aa~~i~g  405 (535)
                      ..       .++... +| +.++.       ..+|+.|++|++||++.   +.+.   ....|..+|+.+|.+|..
T Consensus       199 ~~~~~~g~~~~v~~~-~g-~~~~~~~~~~v~~~~~~~p~i~a~G~~~~~~~g~~~~gp~~~~~~~sG~~~a~~i~~  272 (284)
T 1rp0_A          199 KRLKSIGMIDHVPGM-KA-LDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAGQLALK  272 (284)
T ss_dssp             HHHHHTTSSSCCCCC-EE-ECHHHHHHHHHHHCEEEETTEEECTHHHHHHHTCEECCSCCHHHHHHHHHHHHHHHH
T ss_pred             HHhhhccCCCCcCCc-CC-chhhhhhHHHhhccccccCCEEEEeeehhhhcCCCCcChHHHHHHHhHHHHHHHHHH
Confidence            10       111111 22 33331       34577899999999874   2222   345788999999999974

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=99.11  E-value=4.2e-10  Score=121.80  Aligned_cols=157  Identities=11%  Similarity=-0.041  Sum_probs=90.8

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCC-cccccccccccc---cccccchhhcccc------------ccccc-
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGS-HLSFRKKRRLYY---PVAMSDLELEQDS------------TSALN-  151 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~-~~~~~~~~l~~~---~~~i~~~~~~~~~------------~~~~~-  151 (535)
                      ++|+|||+|++|+.+|+.+...+.+|+|+|++. .++...|.....   ...+......+.+            +..+. 
T Consensus        29 yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~Cnps~ggia~~~lv~ei~algg~~~~~~d~~gi~f~~l~~  108 (651)
T 3ces_A           29 FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQFRILNA  108 (651)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSSSEEESTTHHHHHHHHHHTTCSHHHHHHHHEEEEEEEST
T ss_pred             CCEEEECChHHHHHHHHHHHhCCCCEEEEeecccccccccccccccchhhHHHHHHHHHhccHHHHHhhhcccchhhhhc
Confidence            789999999999999999988999999999984 333222211000   0000000000000            00000 


Q ss_pred             ---------ccccCHHHHHHHHHHHHHHHHHHHHHHHHh-cCcEEEEeEEEEe--cCCE---EEEc-eeEEEcceEEEee
Q psy14461        152 ---------VTIRNWNAATKLIKRFCIRAKNDSMRELKA-LGIDIVRTAAAFT--NPHT---IKLS-NRSVTGFNFLLAV  215 (535)
Q Consensus       152 ---------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~gV~~~~g~~~~~--~~~~---v~~~-~~~~~~d~lViAT  215 (535)
                               ....|...           +...+...+++ .|++++.+++..+  ++..   |.+. +.++.+|.||+||
T Consensus       109 ~kgpav~~~r~~~Dr~~-----------~~~~L~e~Le~~~GV~I~~~~V~~L~~e~g~V~GV~t~dG~~I~Ad~VVLAT  177 (651)
T 3ces_A          109 SKGPAVRATRAQADRVL-----------YRQAVRTALENQPNLMIFQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTV  177 (651)
T ss_dssp             TSCGGGCEEEEEECHHH-----------HHHHHHHHHHTCTTEEEEECCEEEEEESSSBEEEEEETTSEEEEEEEEEECC
T ss_pred             ccCcccccchhhCCHHH-----------HHHHHHHHHHhCCCCEEEEEEEEEEEecCCEEEEEEECCCCEEECCEEEEcC
Confidence                     00112111           22233455666 6999988777665  3443   3343 3679999999999


Q ss_pred             CceecC-CCCC-CceechhhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEE
Q psy14461        216 ERRCLP-EPRN-SALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVY  271 (535)
Q Consensus       216 Gs~p~~-~i~G-~~v~~~~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~  271 (535)
                      |+.+.. .++| .. +          .+.+   +| |.+++++|..|+++|.+|+.+.
T Consensus       178 Gt~s~~~~i~G~~~-~----------~~gr---iG-g~~a~eLA~~L~~lG~~v~~~~  220 (651)
T 3ces_A          178 GTFLDGKIHIGLDN-Y----------SGGR---AG-DPPSIPLSRRLRELPLRVGRLK  220 (651)
T ss_dssp             STTTCCEEECC----------------------------CCHHHHHHHTTTCCEEEEC
T ss_pred             CCCccCccccCccc-C----------CCCC---cc-chhhhHHHHHHHhcCCeEEEec
Confidence            998877 6777 21 0          1233   56 8899999999999999999884

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=98.87  E-value=1.2e-07  Score=102.27  Aligned_cols=158  Identities=7%  Similarity=-0.047  Sum_probs=93.0

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCC-cccccccccccc---cccccchhhccccc------------cccc-
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGS-HLSFRKKRRLYY---PVAMSDLELEQDST------------SALN-  151 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~-~~~~~~~~l~~~---~~~i~~~~~~~~~~------------~~~~-  151 (535)
                      ++|+|||+|++|+.+|+.+...+.+|+|+|++. .++...|.....   ...+..+...+.+.            ..+. 
T Consensus        28 yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~iG~~~Cnps~GGia~g~lv~eldalgg~~~~~~d~~gi~f~~l~~  107 (637)
T 2zxi_A           28 FDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDALGGEMGKAIDQTGIQFKMLNT  107 (637)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCCSCSEEECTTHHHHHHHHHHHTCSHHHHHHHHEEEEEEEST
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEEecccccCCcCccccccccchHHHHHHHHHhhhHHHHHhhhcccceeeccc
Confidence            578999999999999999988899999999984 333222211000   00000000000000            0000 


Q ss_pred             ---------ccccCHHHHHHHHHHHHHHHHHHHHHHHHh-cCcEEEEeEEEEe--cCCE---EEEc-eeEEEcceEEEee
Q psy14461        152 ---------VTIRNWNAATKLIKRFCIRAKNDSMRELKA-LGIDIVRTAAAFT--NPHT---IKLS-NRSVTGFNFLLAV  215 (535)
Q Consensus       152 ---------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~gV~~~~g~~~~~--~~~~---v~~~-~~~~~~d~lViAT  215 (535)
                               ....|...           +...+.+.+++ .||+++.+.+..+  ++..   |.+. +..+.+|.||+||
T Consensus       108 ~kGpav~~~r~~~Dr~~-----------~~~~L~~~Le~~~GVeI~~~~Vt~L~~e~g~V~GV~t~dG~~i~AdaVVLAT  176 (637)
T 2zxi_A          108 RKGKAVQSPRAQADKKR-----------YREYMKKVCENQENLYIKQEEVVDIIVKNNQVVGVRTNLGVEYKTKAVVVTT  176 (637)
T ss_dssp             TSCGGGCEEEEEECHHH-----------HHHHHHHHHHTCTTEEEEESCEEEEEESSSBEEEEEETTSCEEECSEEEECC
T ss_pred             ccCccccchhhhCCHHH-----------HHHHHHHHHHhCCCCEEEEeEEEEEEecCCEEEEEEECCCcEEEeCEEEEcc
Confidence                     00112211           22233455666 5999987777653  3343   3343 3679999999999


Q ss_pred             CceecC-CCCCCceechhhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEE
Q psy14461        216 ERRCLP-EPRNSALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVY  271 (535)
Q Consensus       216 Gs~p~~-~i~G~~v~~~~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~  271 (535)
                      |+.+.. .++|...+.          +.+    .|+.+++++|..|.++|.+++.+.
T Consensus       177 G~~s~~~~~~G~~~~~----------~Gr----~G~~~A~~la~~L~~lG~~v~~l~  219 (637)
T 2zxi_A          177 GTFLNGVIYIGDKMIP----------GGR----LGEPRSEGLSDFYRRFDFPLIRFK  219 (637)
T ss_dssp             TTCBTCEEEETTEEEE----------CSB----TTBCCBCTHHHHHHHTTCCCEEEE
T ss_pred             CCCccCceeccceecC----------CCC----CCchhHHHHHHHHHhcCCceEEec
Confidence            998877 666611110          122    245678999999999999887664

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=98.85  E-value=1.6e-09  Score=115.53  Aligned_cols=140  Identities=19%  Similarity=0.140  Sum_probs=100.8

Q ss_pred             EcceEEEeeCceecC-CCCC---Ccee---chhhHHhc--------------cCCCCcEEEECCChHHHHHHHHHHhCCC
Q psy14461        207 TGFNFLLAVERRCLP-EPRN---SALI---SADDLFRL--------------GAWPGKTLVLGGSLMAVEIAATLNFLGV  265 (535)
Q Consensus       207 ~~d~lViATGs~p~~-~i~G---~~v~---~~~~~~~~--------------~~~~k~vvViGgG~~g~e~A~~l~~~g~  265 (535)
                      .||+++++||++|.. ++++   +.++   ...+...+              .....+|+|||||++|+.+|..|++.|.
T Consensus        37 ~~~~l~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIVGgG~aGl~aA~~La~~G~  116 (497)
T 2bry_A           37 SFQGLCRALGVESGGGLSQYHKIKAQLNYWSAKSLWAKLDKRASQPVYQQGQACTNTKCLVVGAGPCGLRAAVELALLGA  116 (497)
T ss_dssp             HHHHHHHHHTCCTTCHHHHHHHHHHTCCSTTTHHHHHHHHHHHTSGGGGGGTTTTTCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhCCCCCCCcEeehhhHHHHHHHHHHHhhhhhhhhhccccccCccccCCCCEEEECccHHHHHHHHHHHHCCC
Confidence            478899999999876 6655   2222   23333332              1235789999999999999999999999


Q ss_pred             cEEEEEc-CcCCcc-----Cc----------------------------HHHHHHHHHhhhcCCeEE-cceEEEEEEEeC
Q psy14461        266 PVTLVYS-RRLLKH-----FD----------------------------QEMVRILLSSLTKAGVSI-QCCVIEKVISSF  310 (535)
Q Consensus       266 ~Vtlv~~-~~~l~~-----~~----------------------------~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~  310 (535)
                      +|+|+++ +.+...     .+                            .++.+.+.+.+++.||++ .++++++++.++
T Consensus       117 ~V~liEk~~~~g~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~  196 (497)
T 2bry_A          117 RVVLVEKRIKFSRHNVLHLWPFTIHDLRALGAKKFYGRFCTGTLDHISIRQLQLLLLKVALLLGVEIHWGVKFTGLQPPP  196 (497)
T ss_dssp             EEEEEESCSSCCCCCEEECCHHHHHHHHTTTHHHHCTTTTCTTCCEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEECCC
T ss_pred             eEEEEEeccccCCCCcccCChhHHHHHHHcCCccccccccccccccCCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEec
Confidence            9999998 654210     01                            456667778888889999 999999998631


Q ss_pred             --CCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCC
Q psy14461        311 --DGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAA  346 (535)
Q Consensus       311 --~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~  346 (535)
                        ++.+.|++....+|+..++.+|.||+|+|..+....
T Consensus       197 ~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S~~r~  234 (497)
T 2bry_A          197 RKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKFVPEG  234 (497)
T ss_dssp             STTCCBEEEEESCCCHHHHTCCBSEEEECCCTTCCCTT
T ss_pred             CCCCEEEEEEEECCCCCEEEEEcCEEEECCCCCccccc
Confidence              234567664211453236899999999999987653

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=98.79  E-value=4.1e-10  Score=117.63  Aligned_cols=95  Identities=12%  Similarity=-0.038  Sum_probs=70.1

Q ss_pred             cHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccC--------CCCCCCCCCcc
Q psy14461        280 DQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAME--------KKFDFAALNLH  350 (535)
Q Consensus       280 ~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G--------~~p~~~~l~l~  350 (535)
                      +..+...+...+++.| ++ +++.|++|+.+ ++.+.|++   .+|+  ++.+|.||+|+|        +.|+.+....+
T Consensus       203 ~~g~~~l~~~~~~~~g-~i~~~~~V~~i~~~-~~~v~v~~---~~g~--~~~ad~vi~a~~~~~l~~i~~~p~l~~~~~~  275 (431)
T 3k7m_X          203 SNGSADLVDAMSQEIP-EIRLQTVVTGIDQS-GDVVNVTV---KDGH--AFQAHSVIVATPMNTWRRIVFTPALPERRRS  275 (431)
T ss_dssp             TTCTHHHHHHHHTTCS-CEESSCCEEEEECS-SSSEEEEE---TTSC--CEEEEEEEECSCGGGGGGSEEESCCCHHHHH
T ss_pred             CCcHHHHHHHHHhhCC-ceEeCCEEEEEEEc-CCeEEEEE---CCCC--EEEeCEEEEecCcchHhheeeCCCCCHHHHH
Confidence            3444556666666778 99 99999999876 45677776   3676  699999999999        88988764323


Q ss_pred             ccCeeecCCCceEcCCCCCcCCCCEEEeCCcC
Q psy14461        351 HIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIV  382 (535)
Q Consensus       351 ~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~  382 (535)
                      ..+.... ...++|+..++|+.++||+.||..
T Consensus       276 ~~~~~~~-~~~~kv~~~~~~~~~~i~~~~d~~  306 (431)
T 3k7m_X          276 VIEEGHG-GQGLKILIHVRGAEAGIECVGDGI  306 (431)
T ss_dssp             HHHHCCC-CCEEEEEEEEESCCTTEEEEBSSS
T ss_pred             HHHhCCC-cceEEEEEEECCCCcCceEcCCCC
Confidence            2222222 234899999999999999999986

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=98.75  E-value=3.3e-08  Score=107.00  Aligned_cols=159  Identities=11%  Similarity=-0.038  Sum_probs=92.2

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCC-cccccccccccc---cccccchhhcccc------------ccccc-
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGS-HLSFRKKRRLYY---PVAMSDLELEQDS------------TSALN-  151 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~-~~~~~~~~l~~~---~~~i~~~~~~~~~------------~~~~~-  151 (535)
                      ++|+|||+|++|+.+|+.+...+.+|+|+|+.. .++...|.....   ...+-......++            +..+. 
T Consensus        22 yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~c~ps~gGia~~~lv~el~al~g~~~~~~d~~gi~f~~l~~  101 (641)
T 3cp8_A           22 YDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVARMSCNPAIGGVAKGQITREIDALGGEMGKAIDATGIQFRMLNR  101 (641)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCSEEECHHHHHHHHHHHHHTCSHHHHHHHHEEEEEEECS
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccCCCccccchhhhhHHHHHHHHHhcccHHHHHHHhcCCchhhccc
Confidence            789999999999999999988899999999985 233222210000   0000000000000            00000 


Q ss_pred             ---------ccccCHHHHHHHHHHHHHHHHHHHHHHHHh-cCcEEEEeEEEEe--cCCEE---EEc-eeEEEcceEEEee
Q psy14461        152 ---------VTIRNWNAATKLIKRFCIRAKNDSMRELKA-LGIDIVRTAAAFT--NPHTI---KLS-NRSVTGFNFLLAV  215 (535)
Q Consensus       152 ---------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~gV~~~~g~~~~~--~~~~v---~~~-~~~~~~d~lViAT  215 (535)
                               ....|...+           ...+.+.+++ .||+++.+.+..+  ++..+   .+. +.++.+|.||+||
T Consensus       102 ~kgpav~~~r~~~Dr~~l-----------~~~L~~~l~~~~GV~I~~~~V~~L~~d~g~V~GV~t~~G~~i~Ad~VVLAT  170 (641)
T 3cp8_A          102 SKGPAMHSPRAQADKTQY-----------SLYMRRIVEHEPNIDLLQDTVIGVSANSGKFSSVTVRSGRAIQAKAAILAC  170 (641)
T ss_dssp             SSCTTTCEEEEEECHHHH-----------HHHHHHHHHTCTTEEEEECCEEEEEEETTEEEEEEETTSCEEEEEEEEECC
T ss_pred             ccCccccchhhhcCHHHH-----------HHHHHHHHHhCCCCEEEeeEEEEEEecCCEEEEEEECCCcEEEeCEEEECc
Confidence                     001222222           2223355666 4999988777653  34443   333 3689999999999


Q ss_pred             CceecC-CCCCCceechhhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEE
Q psy14461        216 ERRCLP-EPRNSALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVY  271 (535)
Q Consensus       216 Gs~p~~-~i~G~~v~~~~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~  271 (535)
                      |+.+.. .++|..-+        .  ..+++   |+.+++++|..|.+.|.+|+.+.
T Consensus       171 G~~s~~~i~~G~~~~--------~--~g~~v---G~~~a~~la~~L~~~G~kv~~l~  214 (641)
T 3cp8_A          171 GTFLNGLIHIGMDHF--------P--GGRST---AEPPVEGLTESLASLGFSFGRLK  214 (641)
T ss_dssp             TTCBTCEEEETTEEE--------E--CSSST---TSCCBCSHHHHHHHTTCCEEEEE
T ss_pred             CCCCCccceeeeeee--------c--ccccc---CCchhhhhHHHHHhCCceEEeec
Confidence            998866 44441111        0  11221   46788999999999999987664

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=98.49  E-value=4.4e-07  Score=90.55  Aligned_cols=99  Identities=19%  Similarity=0.115  Sum_probs=79.9

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC---------------cc----CcHHHHHHHHHhhhcCCeEE-cc
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL---------------KH----FDQEMVRILLSSLTKAGVSI-QC  300 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l---------------~~----~~~~~~~~~~~~l~~~gV~i-~~  300 (535)
                      .+|+|||||+.|+.+|..|++.|.+|+++++ +.+.               +.    ...++...+.+.+++.|+++ .+
T Consensus         8 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (332)
T 3lzw_A            8 YDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQLSALYPEKYIYDVAGFPKIRAQELINNLKEQMAKFDQTICLE   87 (332)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHHCTTSEECCSTTCSSEEHHHHHHHHHHHHTTSCCEEECS
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceehhcCCCceEeccCCCCCCCHHHHHHHHHHHHHHhCCcEEcc
Confidence            5799999999999999999999999999998 6432               11    13677788888888889999 99


Q ss_pred             eEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCC---CCCCCC
Q psy14461        301 CVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEK---KFDFAA  346 (535)
Q Consensus       301 ~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~---~p~~~~  346 (535)
                      ++|++++...++.+.|.+.   +|   ++.+|.+++|+|.   .|....
T Consensus        88 ~~v~~i~~~~~~~~~v~~~---~g---~~~~d~vVlAtG~~~~~p~~~~  130 (332)
T 3lzw_A           88 QAVESVEKQADGVFKLVTN---EE---THYSKTVIITAGNGAFKPRKLE  130 (332)
T ss_dssp             CCEEEEEECTTSCEEEEES---SE---EEEEEEEEECCTTSCCEECCCC
T ss_pred             CEEEEEEECCCCcEEEEEC---CC---EEEeCEEEECCCCCcCCCCCCC
Confidence            9999998863335677763   45   4899999999999   776543

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=98.48  E-value=8.6e-07  Score=86.93  Aligned_cols=99  Identities=14%  Similarity=0.057  Sum_probs=76.8

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcC---------Ccc----CcHHHHHHHHHhhhcC-CeEEcceEEEEE
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRL---------LKH----FDQEMVRILLSSLTKA-GVSIQCCVIEKV  306 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~---------l~~----~~~~~~~~~~~~l~~~-gV~i~~~~v~~i  306 (535)
                      .+|+|||||+.|+.+|..|++.|.+|+++++ +..         ++.    ...++...+.+.+++. ++++.+.+++++
T Consensus         3 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i   82 (297)
T 3fbs_A            3 FDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNRFASHSHGFLGQDGKAPGEIIAEARRQIERYPTIHWVEGRVTDA   82 (297)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCGGGGCSCCCSSTTCTTCCHHHHHHHHHHHHTTCTTEEEEESCEEEE
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCcccccchhhcCCcCCCCCCHHHHHHHHHHHHHhcCCeEEEEeEEEEE
Confidence            4799999999999999999999999999996 321         111    1246777778878776 788833489999


Q ss_pred             EEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCC
Q psy14461        307 ISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAA  346 (535)
Q Consensus       307 ~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~  346 (535)
                      +.+ ++...|++.   +|+  ++.+|.+++|+|..|....
T Consensus        83 ~~~-~~~~~v~~~---~g~--~~~~d~vviAtG~~~~~~~  116 (297)
T 3fbs_A           83 KGS-FGEFIVEID---GGR--RETAGRLILAMGVTDELPE  116 (297)
T ss_dssp             EEE-TTEEEEEET---TSC--EEEEEEEEECCCCEEECCC
T ss_pred             EEc-CCeEEEEEC---CCC--EEEcCEEEECCCCCCCCCC
Confidence            876 455677763   676  7999999999999887543

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=98.48  E-value=3.4e-07  Score=91.65  Aligned_cols=103  Identities=17%  Similarity=0.059  Sum_probs=80.6

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-C----cC------------Ccc-----CcHHHHHHHHHhhhcCCeEE
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-R----RL------------LKH-----FDQEMVRILLSSLTKAGVSI  298 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~----~~------------l~~-----~~~~~~~~~~~~l~~~gV~i  298 (535)
                      .++|+|||||+.|+.+|..|++.|.+|+++++ +    .+            .+.     ...++...+.+.+++.|+++
T Consensus        22 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i  101 (338)
T 3itj_A           22 HNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTTTTEIENFPGFPDGLTGSELMDRMREQSTKFGTEI  101 (338)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCcccccchhhcccCCCcccCCHHHHHHHHHHHHHHcCCEE
Confidence            46899999999999999999999999999998 4    01            111     13578888888899999999


Q ss_pred             -cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCC
Q psy14461        299 -QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAAL  347 (535)
Q Consensus       299 -~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l  347 (535)
                       .++ +.+++.. ++.+.+.+....++.  ++.+|.+++|+|.+|....+
T Consensus       102 ~~~~-v~~i~~~-~~~~~v~~~~~~~~~--~~~~d~vvlAtG~~~~~~~~  147 (338)
T 3itj_A          102 ITET-VSKVDLS-SKPFKLWTEFNEDAE--PVTTDAIILATGASAKRMHL  147 (338)
T ss_dssp             ECSC-EEEEECS-SSSEEEEETTCSSSC--CEEEEEEEECCCEEECCCCC
T ss_pred             EEeE-EEEEEEc-CCEEEEEEEecCCCc--EEEeCEEEECcCCCcCCCCC
Confidence             888 9999876 456666663222444  78999999999998876543

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=98.45  E-value=8.3e-07  Score=88.10  Aligned_cols=98  Identities=13%  Similarity=0.046  Sum_probs=77.8

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEcC--c-C--------Ccc----CcHHHHHHHHHhhhcCCeEE-cceEEEE
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYSR--R-L--------LKH----FDQEMVRILLSSLTKAGVSI-QCCVIEK  305 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~--~-~--------l~~----~~~~~~~~~~~~l~~~gV~i-~~~~v~~  305 (535)
                      .+|+|||||+.|+.+|..|++.|.+|+++++.  . .        .+.    ...++.+.+.+.+++.|+++ . .++.+
T Consensus        16 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v~~   94 (323)
T 3f8d_A           16 FDVIIVGLGPAAYGAALYSARYMLKTLVIGETPGGQLTEAGIVDDYLGLIEIQASDMIKVFNKHIEKYEVPVLL-DIVEK   94 (323)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSTTGGGGGCCEECCSTTSTTEEHHHHHHHHHHHHHTTTCCEEE-SCEEE
T ss_pred             cCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCeecccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEE-EEEEE
Confidence            58999999999999999999999999999973  1 1        121    13577788888888899999 8 89999


Q ss_pred             EEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCC
Q psy14461        306 VISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAA  346 (535)
Q Consensus       306 i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~  346 (535)
                      ++.+ ++.+.+.+.   +|+  ++.+|.+++|+|..|....
T Consensus        95 i~~~-~~~~~v~~~---~g~--~~~~d~lvlAtG~~~~~~~  129 (323)
T 3f8d_A           95 IENR-GDEFVVKTK---RKG--EFKADSVILGIGVKRRKLG  129 (323)
T ss_dssp             EEEC---CEEEEES---SSC--EEEEEEEEECCCCEECCCC
T ss_pred             EEec-CCEEEEEEC---CCC--EEEcCEEEECcCCCCccCC
Confidence            9876 455667763   566  7999999999999887653

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=98.45  E-value=7e-07  Score=89.87  Aligned_cols=92  Identities=13%  Similarity=0.136  Sum_probs=75.0

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC---------------------ccC-----------cHHHHHHHH
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL---------------------KHF-----------DQEMVRILL  288 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l---------------------~~~-----------~~~~~~~~~  288 (535)
                      .+|+|||||+.|+.+|..|++.|.+|+++++ +.+.                     +.+           ..++.+.+.
T Consensus         4 ~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   83 (357)
T 4a9w_A            4 VDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQHAWHSLHLFSPAGWSSIPGWPMPASQGPYPARAEVLAYLA   83 (357)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGGGGGSCTTCBCSSCGGGSCCSSSCCCCCSSSSCBHHHHHHHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccCCCCCcEecCchhhhhCCCCCCCCCccCCCCHHHHHHHHH
Confidence            3699999999999999999999999999998 5431                     110           167888888


Q ss_pred             HhhhcCCeEE-cceEEEEEEEeCCCcEE-EEEecCCCCCceEEEcCEEEEccCC
Q psy14461        289 SSLTKAGVSI-QCCVIEKVISSFDGMKG-VRGFHPESKEPFADVFKTVVNAMEK  340 (535)
Q Consensus       289 ~~l~~~gV~i-~~~~v~~i~~~~~~~~~-v~~~~~~~G~~~~~~~D~vi~a~G~  340 (535)
                      +.+++.|+++ .+++|++++.. ++.+. |++   .+|   ++.+|.||+|+|.
T Consensus        84 ~~~~~~~~~~~~~~~v~~i~~~-~~~~~~v~~---~~g---~~~~d~vV~AtG~  130 (357)
T 4a9w_A           84 QYEQKYALPVLRPIRVQRVSHF-GERLRVVAR---DGR---QWLARAVISATGT  130 (357)
T ss_dssp             HHHHHTTCCEECSCCEEEEEEE-TTEEEEEET---TSC---EEEEEEEEECCCS
T ss_pred             HHHHHcCCEEEcCCEEEEEEEC-CCcEEEEEe---CCC---EEEeCEEEECCCC
Confidence            8888999999 99999999886 45555 554   244   6999999999995

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=98.43  E-value=1.2e-06  Score=79.60  Aligned_cols=106  Identities=8%  Similarity=-0.023  Sum_probs=67.8

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRFC  168 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  168 (535)
                      ++++|||+|++|+.+|......+.+|+|+|+.+........+..+           +++    +......++.+      
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~~~~~~~~~~~~-----------~~~----~~~~~~~~~~~------   60 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKVKGVSRVPNY-----------PGL----LDEPSGEELLR------   60 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCTTTTCSCCCCS-----------TTC----TTCCCHHHHHH------
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccCchhhhcc-----------CCC----cCCCCHHHHHH------
Confidence            578999999999999998888899999999987432111111111           110    00112223322      


Q ss_pred             HHHHHHHHHHHHhcCcEEEEeEEEEec--CC--EEEEceeEEEcceEEEeeCceec
Q psy14461        169 IRAKNDSMRELKALGIDIVRTAAAFTN--PH--TIKLSNRSVTGFNFLLAVERRCL  220 (535)
Q Consensus       169 ~~~~~~~~~~~~~~gV~~~~g~~~~~~--~~--~v~~~~~~~~~d~lViATGs~p~  220 (535)
                           .+.+.+++.||+++.+++..++  +.  .+++++.++.+|.||+|||.+|.
T Consensus        61 -----~l~~~~~~~gv~v~~~~v~~i~~~~~~~~v~~~~g~i~ad~vI~A~G~~~~  111 (180)
T 2ywl_A           61 -----RLEAHARRYGAEVRPGVVKGVRDMGGVFEVETEEGVEKAERLLLCTHKDPT  111 (180)
T ss_dssp             -----HHHHHHHHTTCEEEECCCCEEEECSSSEEEECSSCEEEEEEEEECCTTCCH
T ss_pred             -----HHHHHHHHcCCEEEeCEEEEEEEcCCEEEEEECCCEEEECEEEECCCCCCC
Confidence                 2335677789999887543332  22  34444458999999999999884

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=98.43  E-value=1.5e-06  Score=91.67  Aligned_cols=106  Identities=13%  Similarity=0.103  Sum_probs=79.7

Q ss_pred             CcEEEECCChHHHHHHHHHHh---CCCc---EEEEEc-CcCCc-------------------------------------
Q psy14461        242 GKTLVLGGSLMAVEIAATLNF---LGVP---VTLVYS-RRLLK-------------------------------------  277 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~---~g~~---Vtlv~~-~~~l~-------------------------------------  277 (535)
                      ++|+|||||+.|+.+|..|++   .|.+   |+++++ +.+..                                     
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g~~~~~~~y~~l~~~~~~~~~~~~   82 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLEFA   82 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSCCSCCSBCTTSSBCCCCCCTTCBCSSCGGGTCBT
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeecCCCCCccccCCCCcCccccchhhcCChhhcccC
Confidence            689999999999999999999   9999   999998 54310                                     


Q ss_pred             cC---------------cHHHHHHHHHhhhcCCeE--E-cceEEEEEEEeCC-CcEEEEEecCCCCCceEEEcCEEEEcc
Q psy14461        278 HF---------------DQEMVRILLSSLTKAGVS--I-QCCVIEKVISSFD-GMKGVRGFHPESKEPFADVFKTVVNAM  338 (535)
Q Consensus       278 ~~---------------~~~~~~~~~~~l~~~gV~--i-~~~~v~~i~~~~~-~~~~v~~~~~~~G~~~~~~~D~vi~a~  338 (535)
                      .+               ..++.+.+.+.+++.|++  + .+++|+.++..++ +...|++.+..+|+..++.+|.||+|+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~~~~~d~VVvAt  162 (464)
T 2xve_A           83 DYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVVCCT  162 (464)
T ss_dssp             TBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECC
T ss_pred             CCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCceEEEEcCEEEECC
Confidence            00               145566777777777888  8 9999999987632 256777753224544578999999999


Q ss_pred             C--CCCCCCCC
Q psy14461        339 E--KKFDFAAL  347 (535)
Q Consensus       339 G--~~p~~~~l  347 (535)
                      |  ..|+...+
T Consensus       163 G~~s~p~~p~i  173 (464)
T 2xve_A          163 GHFSTPYVPEF  173 (464)
T ss_dssp             CSSSSBCCCCC
T ss_pred             CCCCCCccCCC
Confidence            9  77776543

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=98.41  E-value=1.5e-06  Score=86.98  Aligned_cols=94  Identities=13%  Similarity=0.088  Sum_probs=75.8

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC---------------cc----CcHHHHHHHHHhhhcCCeEE-cc
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL---------------KH----FDQEMVRILLSSLTKAGVSI-QC  300 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l---------------~~----~~~~~~~~~~~~l~~~gV~i-~~  300 (535)
                      .+|+|||||+.|+.+|..|++.|.+|+++++ +.+.               +.    ...++...+.+.+++.++++ .+
T Consensus         6 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~   85 (335)
T 2zbw_A            6 TDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQLTALYPEKYIYDVAGFPKVYAKDLVKGLVEQVAPFNPVYSLG   85 (335)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHGGGCCEEEES
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeeccCCCceeeccCCCCCCCHHHHHHHHHHHHHHcCCEEEeC
Confidence            5799999999999999999999999999998 5431               11    12567777778888889999 99


Q ss_pred             eEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCC
Q psy14461        301 CVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKK  341 (535)
Q Consensus       301 ~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~  341 (535)
                      ++|++++.. ++.+.|.+   .+|+  ++.+|.+++|+|..
T Consensus        86 ~~v~~i~~~-~~~~~v~~---~~g~--~~~~~~lv~AtG~~  120 (335)
T 2zbw_A           86 ERAETLERE-GDLFKVTT---SQGN--AYTAKAVIIAAGVG  120 (335)
T ss_dssp             CCEEEEEEE-TTEEEEEE---TTSC--EEEEEEEEECCTTS
T ss_pred             CEEEEEEEC-CCEEEEEE---CCCC--EEEeCEEEECCCCC
Confidence            999999876 34566665   3565  79999999999983

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=98.40  E-value=1.3e-06  Score=88.67  Aligned_cols=96  Identities=14%  Similarity=0.080  Sum_probs=77.5

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC-------c--------c----CcHHHHHHHHHhhhcCCeEE-cc
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL-------K--------H----FDQEMVRILLSSLTKAGVSI-QC  300 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l-------~--------~----~~~~~~~~~~~~l~~~gV~i-~~  300 (535)
                      .+|+|||||+.|+.+|..|++.|.+|+++++ +.+.       |        .    ...++.+.+.+.+++.++++ .+
T Consensus        15 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~   94 (360)
T 3ab1_A           15 RDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLAALYPEKHIYDVAGFPEVPAIDLVESLWAQAERYNPDVVLN   94 (360)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHHTTCCEEECS
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCcccccCCCcccccCCCCCCCCHHHHHHHHHHHHHHhCCEEEcC
Confidence            5799999999999999999999999999998 5431       1        1    12667777888888889999 99


Q ss_pred             eEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCC
Q psy14461        301 CVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKF  342 (535)
Q Consensus       301 ~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p  342 (535)
                      ++|+.++..+++.+.|++   .+|+  ++.+|.+++|+|..+
T Consensus        95 ~~v~~i~~~~~~~~~v~~---~~g~--~~~~~~li~AtG~~~  131 (360)
T 3ab1_A           95 ETVTKYTKLDDGTFETRT---NTGN--VYRSRAVLIAAGLGA  131 (360)
T ss_dssp             CCEEEEEECTTSCEEEEE---TTSC--EEEEEEEEECCTTCS
T ss_pred             CEEEEEEECCCceEEEEE---CCCc--EEEeeEEEEccCCCc
Confidence            999999876333567776   3676  799999999999843

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=98.38  E-value=2e-06  Score=90.17  Aligned_cols=105  Identities=13%  Similarity=-0.052  Sum_probs=78.7

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCC--cEEEEEc-CcCCc---c------------------------------------
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLGV--PVTLVYS-RRLLK---H------------------------------------  278 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g~--~Vtlv~~-~~~l~---~------------------------------------  278 (535)
                      ..+|+|||||+.|+.+|..|++.|.  +|+++++ +.+..   .                                    
T Consensus         6 ~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~~~~~~~~~~~~~ip~~~~~~~~~~~~~g~~~~~~~~~~~   85 (447)
T 2gv8_A            6 IRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPLY   85 (447)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCCCC
T ss_pred             CCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCeecCCCCCCcccccccccccccccccccccccCCccCchh
Confidence            4689999999999999999999999  9999998 53310   0                                    


Q ss_pred             ---------------------------CcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCC-ceEE
Q psy14461        279 ---------------------------FDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKE-PFAD  329 (535)
Q Consensus       279 ---------------------------~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~-~~~~  329 (535)
                                                 ...++.+++.+..++.++.+ .+++|++++.. ++.+.|++.+..+|+ ..++
T Consensus        86 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~t~V~~v~~~-~~~~~V~~~~~~~G~~~~~~  164 (447)
T 2gv8_A           86 RDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKK-DGSWVVTYKGTKAGSPISKD  164 (447)
T ss_dssp             TTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEE-TTEEEEEEEESSTTCCEEEE
T ss_pred             hhhccCCCHHHhccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCeEEeCCEEEEEEeC-CCeEEEEEeecCCCCeeEEE
Confidence                                       01245566666666667788 99999999876 566777775322354 4478


Q ss_pred             EcCEEEEccCC--CCCCCC
Q psy14461        330 VFKTVVNAMEK--KFDFAA  346 (535)
Q Consensus       330 ~~D~vi~a~G~--~p~~~~  346 (535)
                      .+|.||+|+|.  .|+...
T Consensus       165 ~~d~VVvAtG~~s~p~~p~  183 (447)
T 2gv8_A          165 IFDAVSICNGHYEVPYIPN  183 (447)
T ss_dssp             EESEEEECCCSSSSBCBCC
T ss_pred             EeCEEEECCCCCCCCCCCC
Confidence            99999999998  676543

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=98.36  E-value=2e-06  Score=85.13  Aligned_cols=100  Identities=13%  Similarity=0.121  Sum_probs=70.1

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc-Cc---CC---c-------cCcHHHHHHHHHhhhcC-CeEEcceEEEEEE
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RR---LL---K-------HFDQEMVRILLSSLTKA-GVSIQCCVIEKVI  307 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~---~l---~-------~~~~~~~~~~~~~l~~~-gV~i~~~~v~~i~  307 (535)
                      .|+|||+|+.|+.+|..++++|.+|+++++ ..   +.   +       ...+++.+...+.+.+. ++.+....+..+.
T Consensus         8 DVvIIGaGpAGlsAA~~lar~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (304)
T 4fk1_A            8 DCAVIGAGPAGLNASLVLGRARKQIALFDNNTNRNRVTQNSHGFITRDGIKPEEFKEIGLNEVMKYPSVHYYEKTVVMIT   87 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCGGGGSSCBCCSTTCTTBCHHHHHHHHHHHHTTSTTEEEEECCEEEEE
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCeeeeecCCccCCCCCCHHHHHHHHHHHHHhcCCEEEEeeEEEEee
Confidence            599999999999999999999999999997 31   00   1       12345555555555444 4566444555555


Q ss_pred             EeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCC
Q psy14461        308 SSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAAL  347 (535)
Q Consensus       308 ~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l  347 (535)
                      ...++..++.+   .+|+  ++.+|.+|+|||.+|....+
T Consensus        88 ~~~~~~~~v~~---~~g~--~~~a~~liiATGs~p~~p~i  122 (304)
T 4fk1_A           88 KQSTGLFEIVT---KDHT--KYLAERVLLATGMQEEFPSI  122 (304)
T ss_dssp             ECTTSCEEEEE---TTCC--EEEEEEEEECCCCEEECCSC
T ss_pred             ecCCCcEEEEE---CCCC--EEEeCEEEEccCCccccccc
Confidence            54345566766   3677  89999999999998875443

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=98.35  E-value=1.3e-06  Score=89.86  Aligned_cols=98  Identities=14%  Similarity=0.074  Sum_probs=72.6

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC---ccCcHHH---------HHHHHHhhhcCCeEE-cceEEEEEE
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL---KHFDQEM---------VRILLSSLTKAGVSI-QCCVIEKVI  307 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l---~~~~~~~---------~~~~~~~l~~~gV~i-~~~~v~~i~  307 (535)
                      -+|+|||||+.|+.+|..|.+.+.+|+++++ +.+.   +.+...+         .....+.+++.||++ .+++|++|+
T Consensus        10 ~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~y~~~~l~~~l~g~~~~~~l~~~~~~~~~~~~i~~~~~~~V~~id   89 (385)
T 3klj_A           10 TKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPYYRPRLNEIIAKNKSIDDILIKKNDWYEKNNIKVITSEFATSID   89 (385)
T ss_dssp             CSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCCBCGGGHHHHHHSCCCGGGTBSSCHHHHHHTTCEEECSCCEEEEE
T ss_pred             CCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCCcccChhhHHHcCCCCHHHccCCCHHHHHHCCCEEEeCCEEEEEE
Confidence            4799999999999999999777899999998 4421   1111111         111234456789999 999999998


Q ss_pred             EeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCC
Q psy14461        308 SSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAAL  347 (535)
Q Consensus       308 ~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l  347 (535)
                      .+  + ..|++   .+|+  ++.+|.+++|||.+|....+
T Consensus        90 ~~--~-~~v~~---~~g~--~~~yd~lvlAtG~~p~~p~i  121 (385)
T 3klj_A           90 PN--N-KLVTL---KSGE--KIKYEKLIIASGSIANKIKV  121 (385)
T ss_dssp             TT--T-TEEEE---TTSC--EEECSEEEECCCEEECCCCC
T ss_pred             CC--C-CEEEE---CCCC--EEECCEEEEecCCCcCCCCC
Confidence            64  2 25666   3777  89999999999998876543

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=98.35  E-value=2.5e-06  Score=84.41  Aligned_cols=97  Identities=12%  Similarity=0.059  Sum_probs=76.5

Q ss_pred             cEEEECCChHHHHHHHHHHhCCC-cEEEEEc-Cc-----------CCcc-----CcHHHHHHHHHhhhcCCeEE-cceEE
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGV-PVTLVYS-RR-----------LLKH-----FDQEMVRILLSSLTKAGVSI-QCCVI  303 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~-~Vtlv~~-~~-----------~l~~-----~~~~~~~~~~~~l~~~gV~i-~~~~v  303 (535)
                      +|+|||+|+.|+.+|..|++.|. +|+++++ ..           ..+.     ..+++.+.+.+.+++.|+++ . .++
T Consensus         3 dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~-~~v   81 (311)
T 2q0l_A            3 DCAIIGGGPAGLSAGLYATRGGVKNAVLFEKGMPGGQITGSSEIENYPGVKEVVSGLDFMQPWQEQCFRFGLKHEM-TAV   81 (311)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSSEEEECSSSTTCGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHHTTSCEEEC-SCE
T ss_pred             eEEEECccHHHHHHHHHHHHCCCCcEEEEcCCCCCcccccccccccCCCCcccCCHHHHHHHHHHHHHHcCCEEEE-EEE
Confidence            69999999999999999999999 9999987 31           0121     12567777888888889999 7 788


Q ss_pred             EEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCC
Q psy14461        304 EKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAA  346 (535)
Q Consensus       304 ~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~  346 (535)
                      .+++.. ++.+.|.+   .+|+  ++.+|.+++|+|..|....
T Consensus        82 ~~i~~~-~~~~~v~~---~~g~--~~~~~~vv~AtG~~~~~~~  118 (311)
T 2q0l_A           82 QRVSKK-DSHFVILA---EDGK--TFEAKSVIIATGGSPKRTG  118 (311)
T ss_dssp             EEEEEE-TTEEEEEE---TTSC--EEEEEEEEECCCEEECCCC
T ss_pred             EEEEEc-CCEEEEEE---cCCC--EEECCEEEECCCCCCCCCC
Confidence            888876 45556665   3666  7999999999998887543

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=98.30  E-value=2.1e-06  Score=89.19  Aligned_cols=95  Identities=17%  Similarity=0.152  Sum_probs=75.4

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc-----------------------------------------
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH-----------------------------------------  278 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~-----------------------------------------  278 (535)
                      ..+|+|||||..|+.+|..|++.|.+|+|+++ +.+...                                         
T Consensus        27 ~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  106 (417)
T 3v76_A           27 KQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLSGNPHFCKSALARYRPQDF  106 (417)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEESSTTTTHHHHHHSCHHHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhhcCHHHHHHHHHhcCHHHH
Confidence            35799999999999999999999999999998 543100                                         


Q ss_pred             -----------------------CcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEE
Q psy14461        279 -----------------------FDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTV  334 (535)
Q Consensus       279 -----------------------~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~v  334 (535)
                                             ...++.+.+.+.+++.|+++ .+++|+++..+ ++.+.|++.   +|   ++.+|.|
T Consensus       107 ~~~~~~~Gi~~~~~~~g~~~~~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~-~~~~~V~~~---~g---~i~ad~V  179 (417)
T 3v76_A          107 VALVERHGIGWHEKTLGQLFCDHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERT-ASGFRVTTS---AG---TVDAASL  179 (417)
T ss_dssp             HHHHHHTTCCEEECSTTEEEESSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEE-TTEEEEEET---TE---EEEESEE
T ss_pred             HHHHHHcCCCcEEeeCCEEeeCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEe-CCEEEEEEC---Cc---EEEeeEE
Confidence                                   01255666777788889999 99999999876 455667662   44   6999999


Q ss_pred             EEccCCCC
Q psy14461        335 VNAMEKKF  342 (535)
Q Consensus       335 i~a~G~~p  342 (535)
                      |+|+|..+
T Consensus       180 IlAtG~~S  187 (417)
T 3v76_A          180 VVASGGKS  187 (417)
T ss_dssp             EECCCCSS
T ss_pred             EECCCCcc
Confidence            99999876

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=98.29  E-value=5e-07  Score=93.59  Aligned_cols=100  Identities=20%  Similarity=0.178  Sum_probs=73.4

Q ss_pred             CcEEEECCChHHHHHHHHHHh---CCCcEEEEEc-CcCC--cc---------CcHHHHHHHHHhhhcCCeEE-cceEEEE
Q psy14461        242 GKTLVLGGSLMAVEIAATLNF---LGVPVTLVYS-RRLL--KH---------FDQEMVRILLSSLTKAGVSI-QCCVIEK  305 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~---~g~~Vtlv~~-~~~l--~~---------~~~~~~~~~~~~l~~~gV~i-~~~~v~~  305 (535)
                      ++|+|||||+.|+.+|..|++   .|.+|+|+++ +.+.  +.         ..+++...+.+.+++.|+++ .+ ++++
T Consensus         2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~   80 (409)
T 3h8l_A            2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALPHVAIGVRDVDELKVDLSEALPEKGIQFQEG-TVEK   80 (409)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEECCSSCCCCSSCCCCCCEEEEHHHHTGGGTCEEEEC-EEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCceeccchhhcccCCcCHHHHHHHHHHHHhhCCeEEEEe-eEEE
Confidence            579999999999999999999   8999999998 5431  11         12233344566777789999 77 8988


Q ss_pred             EEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCC
Q psy14461        306 VISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAA  346 (535)
Q Consensus       306 i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~  346 (535)
                      ++.+ +.  .|++.+ .+++..++++|.+++|+|.+|+...
T Consensus        81 i~~~-~~--~V~~~~-g~~~~~~~~~d~lViAtG~~~~~~~  117 (409)
T 3h8l_A           81 IDAK-SS--MVYYTK-PDGSMAEEEYDYVIVGIGAHLATEL  117 (409)
T ss_dssp             EETT-TT--EEEEEC-TTSCEEEEECSEEEECCCCEECGGG
T ss_pred             EeCC-CC--EEEEcc-CCcccceeeCCEEEECCCCCcCccC
Confidence            8764 22  455542 2233356999999999999988654

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=98.28  E-value=2.8e-06  Score=91.06  Aligned_cols=97  Identities=19%  Similarity=0.218  Sum_probs=77.1

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcC------------------------------------C------c
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRL------------------------------------L------K  277 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~------------------------------------l------~  277 (535)
                      ..+|+|||||+.|+.+|..|++.|.+|+|+++ +.+                                    +      +
T Consensus       107 ~~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~~~~~R~~~~~g~w~~~~~~~~~~i~~g~gGag~~sdgkl~~~i~~~  186 (549)
T 3nlc_A          107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVKDP  186 (549)
T ss_dssp             CCCCEEECCSHHHHHHHHHHHHTTCCCEEECSSCCHHHHHHHHHHHHHHCCCCTTSSSSSSTTGGGTTSCCCCCCCSCCT
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCeEEEEEccCcccccccchhcccccccccccccceeccCCcccccCCceEEEeccc
Confidence            46899999999999999999999999999998 532                                    0      0


Q ss_pred             cC------------------------------cHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcE-EEEEecCCCCC
Q psy14461        278 HF------------------------------DQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMK-GVRGFHPESKE  325 (535)
Q Consensus       278 ~~------------------------------~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~-~v~~~~~~~G~  325 (535)
                      ..                              ...+.+.+.+.+++.|+++ ++++|+++..+ ++.+ .|++   .+|+
T Consensus       187 ~~~~~~v~~~~~~~G~~~~i~~~~~p~~G~~~~~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~-~~~v~gV~l---~~G~  262 (549)
T 3nlc_A          187 NFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHME-DGQITGVTL---SNGE  262 (549)
T ss_dssp             TCHHHHHHHHHHHTTCCGGGGTBSSCCCCHHHHHHHHHHHHHHHHHTTCEEESSCCEEEEEES-SSBEEEEEE---TTSC
T ss_pred             cccHHHHHHHHHHcCCCceEeeccccccccchHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEe-CCEEEEEEE---CCCC
Confidence            00                              0445566777788899999 99999999876 4544 4666   3676


Q ss_pred             ceEEEcCEEEEccCCCCC
Q psy14461        326 PFADVFKTVVNAMEKKFD  343 (535)
Q Consensus       326 ~~~~~~D~vi~a~G~~p~  343 (535)
                        ++.+|.||+|+|..+.
T Consensus       263 --~i~Ad~VVlA~G~~s~  278 (549)
T 3nlc_A          263 --EIKSRHVVLAVGHSAR  278 (549)
T ss_dssp             --EEECSCEEECCCTTCH
T ss_pred             --EEECCEEEECCCCChh
Confidence              7999999999999884

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=98.27  E-value=3.6e-06  Score=83.28  Aligned_cols=98  Identities=15%  Similarity=0.164  Sum_probs=76.2

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc-C--cCC-----------c-cCcHHHHHHHHHhhhcCCeEE-cceEEEEE
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-R--RLL-----------K-HFDQEMVRILLSSLTKAGVSI-QCCVIEKV  306 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~--~~l-----------~-~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i  306 (535)
                      +|+|||+|+.|+.+|..|++.|.+|+++++ .  ...           + ...+++.+.+.+.+++.|+++ .+++++.+
T Consensus         3 dvvIIG~G~aGl~aA~~l~~~g~~v~li~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i   82 (310)
T 1fl2_A            3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQSASKL   82 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEECSSTTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSCCEEEE
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCceeccccccccccCcCCCCHHHHHHHHHHHHHHcCCeEEccCEEEEE
Confidence            699999999999999999999999999975 1  110           0 112567778888888899999 99899999


Q ss_pred             EEeCC--CcEEEEEecCCCCCceEEEcCEEEEccCCCCCCC
Q psy14461        307 ISSFD--GMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFA  345 (535)
Q Consensus       307 ~~~~~--~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~  345 (535)
                      +.+.+  +...|.+   .+|+  ++.+|.+++|+|..|...
T Consensus        83 ~~~~~~~~~~~v~~---~~g~--~~~~~~lv~AtG~~~~~~  118 (310)
T 1fl2_A           83 IPAAVEGGLHQIET---ASGA--VLKARSIIVATGAKWRNM  118 (310)
T ss_dssp             ECCSSTTCCEEEEE---TTSC--EEEEEEEEECCCEEECCC
T ss_pred             EecccCCceEEEEE---CCCC--EEEeCEEEECcCCCcCCC
Confidence            75421  2456766   3676  799999999999987654

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=98.27  E-value=7.4e-07  Score=93.19  Aligned_cols=98  Identities=12%  Similarity=0.158  Sum_probs=73.4

Q ss_pred             CcEEEECCChHHHHHHHHHHh---CCCcEEEEEc-CcCC--cc---------CcHHHHHHHHHhhhcCCeEEcceEEEEE
Q psy14461        242 GKTLVLGGSLMAVEIAATLNF---LGVPVTLVYS-RRLL--KH---------FDQEMVRILLSSLTKAGVSIQCCVIEKV  306 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~---~g~~Vtlv~~-~~~l--~~---------~~~~~~~~~~~~l~~~gV~i~~~~v~~i  306 (535)
                      ++|+|||||+.|+.+|..|++   .|.+|+++++ +.+.  +.         ...++...+.+.+++.||++...+++.+
T Consensus         5 ~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~gv~~~~~~v~~i   84 (437)
T 3sx6_A            5 AHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHYVERKGIHFIAQSAEQI   84 (437)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEEECGGGHHHHHHTSSCHHHHEEECHHHHHTTTCEEECSCEEEE
T ss_pred             CcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCCcccCCccccccCccCHHHHHHHHHHHHHHCCCEEEEeEEEEE
Confidence            689999999999999999999   7999999998 5431  21         1123333445667788999933588888


Q ss_pred             EEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCC
Q psy14461        307 ISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAAL  347 (535)
Q Consensus       307 ~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l  347 (535)
                      +.+ +.  .|++   .+|+  ++.+|.+++|+|.+|+...+
T Consensus        85 d~~-~~--~V~~---~~g~--~i~~d~lviAtG~~~~~~~i  117 (437)
T 3sx6_A           85 DAE-AQ--NITL---ADGN--TVHYDYLMIATGPKLAFENV  117 (437)
T ss_dssp             ETT-TT--EEEE---TTSC--EEECSEEEECCCCEECGGGS
T ss_pred             EcC-CC--EEEE---CCCC--EEECCEEEECCCCCcCcccC
Confidence            754 22  5666   3676  79999999999999886543

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=98.26  E-value=5.9e-06  Score=82.17  Aligned_cols=97  Identities=8%  Similarity=0.075  Sum_probs=75.5

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEcCcC------------Ccc----CcHHHHHHHHHhhhcCCeEE-cceEEE
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRL------------LKH----FDQEMVRILLSSLTKAGVSI-QCCVIE  304 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~------------l~~----~~~~~~~~~~~~l~~~gV~i-~~~~v~  304 (535)
                      .+|+|||||+.|+.+|..|++.|.+|+++++..+            .+.    ...++.+.+.+.+++.|+++ . .++.
T Consensus        17 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v~   95 (319)
T 3cty_A           17 FDVVIVGAGAAGFSAAVYAARSGFSVAILDKAVAGGLTAEAPLVENYLGFKSIVGSELAKLFADHAANYAKIREG-VEVR   95 (319)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSTTGGGGGCSCBCCBTTBSSBCHHHHHHHHHHHHHTTSEEEET-CCEE
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCccccccchhhhcCCCcccCHHHHHHHHHHHHHHcCCEEEE-eeEE
Confidence            5799999999999999999999999999997211            121    12566777778888889999 7 6888


Q ss_pred             EEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCC
Q psy14461        305 KVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAA  346 (535)
Q Consensus       305 ~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~  346 (535)
                      .++.. ++.+.|..    +++  ++.+|.+++|+|..|....
T Consensus        96 ~i~~~-~~~~~v~~----~~~--~~~~~~li~AtG~~~~~~~  130 (319)
T 3cty_A           96 SIKKT-QGGFDIET----NDD--TYHAKYVIITTGTTHKHLG  130 (319)
T ss_dssp             EEEEE-TTEEEEEE----SSS--EEEEEEEEECCCEEECCCC
T ss_pred             EEEEe-CCEEEEEE----CCC--EEEeCEEEECCCCCcccCC
Confidence            88875 34455654    455  7999999999998876543

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=98.25  E-value=5.5e-06  Score=82.58  Aligned_cols=98  Identities=11%  Similarity=0.009  Sum_probs=75.4

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEcCcC------------CccC-----cHHHHHHHHHhhhcCCeEE-cceEE
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRL------------LKHF-----DQEMVRILLSSLTKAGVSI-QCCVI  303 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~------------l~~~-----~~~~~~~~~~~l~~~gV~i-~~~~v  303 (535)
                      .+|+|||||+.|+.+|..|++.|.+|+++++..+            .+.+     ..++.+.+.+.+++.|+++ . .++
T Consensus         9 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v   87 (325)
T 2q7v_A            9 YDVVIIGGGPAGLTAAIYTGRAQLSTLILEKGMPGGQIAWSEEVENFPGFPEPIAGMELAQRMHQQAEKFGAKVEM-DEV   87 (325)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTGGGGGCSCBCCSTTCSSCBCHHHHHHHHHHHHHHTTCEEEE-CCE
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCcEEEEeCCCCCcccccccccccCCCCCCCCCHHHHHHHHHHHHHHcCCEEEe-eeE
Confidence            4799999999999999999999999999998311            1111     3467777788888899999 7 578


Q ss_pred             EEEEEe--CCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCC
Q psy14461        304 EKVISS--FDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFA  345 (535)
Q Consensus       304 ~~i~~~--~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~  345 (535)
                      .+++..  ++..+.|.+.   +|+  ++.+|.+++|+|..|...
T Consensus        88 ~~i~~~~~~~~~~~v~~~---~g~--~~~~~~vv~AtG~~~~~~  126 (325)
T 2q7v_A           88 QGVQHDATSHPYPFTVRG---YNG--EYRAKAVILATGADPRKL  126 (325)
T ss_dssp             EEEEECTTSSSCCEEEEE---SSC--EEEEEEEEECCCEEECCC
T ss_pred             EEEEeccCCCceEEEEEC---CCC--EEEeCEEEECcCCCcCCC
Confidence            888764  2221556554   666  799999999999987654

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=98.24  E-value=4.4e-06  Score=82.51  Aligned_cols=97  Identities=9%  Similarity=0.046  Sum_probs=75.2

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEE-EEcCcC------------CccC-----cHHHHHHHHHhhhcCCeEE-cceE
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTL-VYSRRL------------LKHF-----DQEMVRILLSSLTKAGVSI-QCCV  302 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtl-v~~~~~------------l~~~-----~~~~~~~~~~~l~~~gV~i-~~~~  302 (535)
                      .+|+|||||+.|+.+|..|++.|.+|++ ++++.+            .|.+     ..++...+.+.+++.|+++ .+ +
T Consensus         5 ~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~   83 (315)
T 3r9u_A            5 LDVAIIGGGPAGLSAGLYATRGGLKNVVMFEKGMPGGQITSSSEIENYPGVAQVMDGISFMAPWSEQCMRFGLKHEMV-G   83 (315)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHTCSCEEEECSSSTTGGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHTTTCCEEECC-C
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCCCCceeeeeceeccCCCCCCCCCHHHHHHHHHHHHHHcCcEEEEE-E
Confidence            5899999999999999999999999999 886211            1222     2678888888899999999 77 8


Q ss_pred             EEEEEEeCC--CcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCC
Q psy14461        303 IEKVISSFD--GMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAA  346 (535)
Q Consensus       303 v~~i~~~~~--~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~  346 (535)
                      +.++ .+ +  +.+.+.+.   ++.  ++.+|.+++|+|.+|+...
T Consensus        84 v~~i-~~-~~~~~~~v~~~---~~~--~~~~d~lvlAtG~~~~~~~  122 (315)
T 3r9u_A           84 VEQI-LK-NSDGSFTIKLE---GGK--TELAKAVIVCTGSAPKKAG  122 (315)
T ss_dssp             EEEE-EE-CTTSCEEEEET---TSC--EEEEEEEEECCCEEECCCC
T ss_pred             EEEE-ec-CCCCcEEEEEe---cCC--EEEeCEEEEeeCCCCCCCC
Confidence            8888 54 3  45554343   333  7999999999999887653

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=98.20  E-value=7.3e-06  Score=83.78  Aligned_cols=95  Identities=18%  Similarity=0.081  Sum_probs=76.0

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc-----------------------------------------
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH-----------------------------------------  278 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~-----------------------------------------  278 (535)
                      ..+|+|||||+.|+.+|..|++.|.+|+|+++ +.+...                                         
T Consensus        11 ~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~g~~   90 (379)
T 3alj_A           11 TRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQGSHTPPTYETWMHNKS   90 (379)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHHHHTTCBCCSCEEEEETTEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHHHHhhCCCccceEEEeCCce
Confidence            36899999999999999999999999999998 543210                                         


Q ss_pred             ---C-----------cHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCC
Q psy14461        279 ---F-----------DQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFD  343 (535)
Q Consensus       279 ---~-----------~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~  343 (535)
                         +           ..++.+.+.+.+++.|+++ .++++++++.  ++  .|++.   +|+  ++.+|.||.|+|..+.
T Consensus        91 ~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~--~~--~v~~~---~g~--~~~ad~vV~AdG~~s~  161 (379)
T 3alj_A           91 VSKETFNGLPWRIMTRSHLHDALVNRARALGVDISVNSEAVAADP--VG--RLTLQ---TGE--VLEADLIVGADGVGSK  161 (379)
T ss_dssp             EEEECGGGCCEEEEEHHHHHHHHHHHHHHTTCEEESSCCEEEEET--TT--EEEET---TSC--EEECSEEEECCCTTCH
T ss_pred             eeeccCCCCceEEECHHHHHHHHHHHHHhcCCEEEeCCEEEEEEe--CC--EEEEC---CCC--EEEcCEEEECCCccHH
Confidence               0           0345666777778889999 9999999976  33  67663   676  7999999999998875


Q ss_pred             C
Q psy14461        344 F  344 (535)
Q Consensus       344 ~  344 (535)
                      .
T Consensus       162 v  162 (379)
T 3alj_A          162 V  162 (379)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=98.20  E-value=6.4e-06  Score=83.52  Aligned_cols=94  Identities=13%  Similarity=0.125  Sum_probs=73.3

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCC-cEEEEEc-CcCC--------------cc---------------------------
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGV-PVTLVYS-RRLL--------------KH---------------------------  278 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~-~Vtlv~~-~~~l--------------~~---------------------------  278 (535)
                      .+|+|||||+.|+.+|..|++.|. +|+++++ + +.              +.                           
T Consensus         5 ~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~-~Gg~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~   83 (369)
T 3d1c_A            5 HKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT-VGHSFKHWPKSTRTITPSFTSNGFGMPDMNAISMDTSPAFTFNEE   83 (369)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS-TTHHHHTSCTTCBCSSCCCCCGGGTCCCTTCSSTTCCHHHHHCCS
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC-CCCccccCcccccccCcchhcccCCchhhhhcccccccccccccc
Confidence            469999999999999999999999 9999998 5 10              00                           


Q ss_pred             --CcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCC
Q psy14461        279 --FDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFD  343 (535)
Q Consensus       279 --~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~  343 (535)
                        ...++...+.+.+++.|+++ .++.|++++.. ++.+.|...   +|   ++.+|.||+|+|..+.
T Consensus        84 ~~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~-~~~~~v~~~---~g---~~~~d~vVlAtG~~~~  144 (369)
T 3d1c_A           84 HISGETYAEYLQVVANHYELNIFENTVVTNISAD-DAYYTIATT---TE---TYHADYIFVATGDYNF  144 (369)
T ss_dssp             SCBHHHHHHHHHHHHHHTTCEEECSCCEEEEEEC-SSSEEEEES---SC---CEEEEEEEECCCSTTS
T ss_pred             CCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEC-CCeEEEEeC---CC---EEEeCEEEECCCCCCc
Confidence              01345566677778889999 99999999875 345667652   44   4899999999998764

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=98.17  E-value=5.6e-06  Score=89.05  Aligned_cols=100  Identities=12%  Similarity=0.061  Sum_probs=78.2

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCc---------------------c----------------CcHHH
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLK---------------------H----------------FDQEM  283 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~---------------------~----------------~~~~~  283 (535)
                      .+|+|||||+.|+.+|..|++.|.+|+|+++ +.+..                     .                ..+++
T Consensus        22 ~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~~~f~~~~~~~~~~~~~~~~~~ei  101 (549)
T 4ap3_A           22 YDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNWSEKYATQPEI  101 (549)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCSSSSCBHHHH
T ss_pred             CCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCCceeCCCchhcccccccccccCCCCccCCCCHHHH
Confidence            4799999999999999999999999999998 53310                     0                12467


Q ss_pred             HHHHHHhhhcCCe--EE-cceEEEEEEEeCC-CcEEEEEecCCCCCceEEEcCEEEEccC--CCCCCCC
Q psy14461        284 VRILLSSLTKAGV--SI-QCCVIEKVISSFD-GMKGVRGFHPESKEPFADVFKTVVNAME--KKFDFAA  346 (535)
Q Consensus       284 ~~~~~~~l~~~gV--~i-~~~~v~~i~~~~~-~~~~v~~~~~~~G~~~~~~~D~vi~a~G--~~p~~~~  346 (535)
                      .+++.+..++.|+  ++ .+++|++++.+++ +.+.|++   .+|+  ++.+|.||+|+|  .+|....
T Consensus       102 ~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~---~~G~--~i~ad~lV~AtG~~s~p~~p~  165 (549)
T 4ap3_A          102 LAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRT---DRGD--EVSARFLVVAAGPLSNANTPA  165 (549)
T ss_dssp             HHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEE---TTCC--EEEEEEEEECCCSEEECCCCC
T ss_pred             HHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEE---CCCC--EEEeCEEEECcCCCCCCCCCC
Confidence            7778888888888  78 9999999987632 2456776   3777  799999999999  5666543

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=98.17  E-value=8.1e-06  Score=83.98  Aligned_cols=97  Identities=21%  Similarity=0.081  Sum_probs=76.1

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCc-------------------------------------------
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLK-------------------------------------------  277 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~-------------------------------------------  277 (535)
                      .+|+|||||..|+.+|..|++.|.+|+|+++ +.+.+                                           
T Consensus         7 ~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~g~~   86 (399)
T 2x3n_A            7 IDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRERAINGADLLKPAGIRVVEAAGLLAEVTRRGGRVRHELEVYHDGEL   86 (399)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC---CCCCEECHHHHHHHHHTTCHHHHHHTTCEEECEEEEEETTEE
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCCccCceeeECchHHHHHHHcCcHHHHHHhCCCcceeEEEeCCCCE
Confidence            4799999999999999999999999999998 54300                                           


Q ss_pred             --c---------------CcHHHHHHHHHhhhcC-CeEE-cceEEEEEEEeCCCcE--EEEEecCCCCCceEEEcCEEEE
Q psy14461        278 --H---------------FDQEMVRILLSSLTKA-GVSI-QCCVIEKVISSFDGMK--GVRGFHPESKEPFADVFKTVVN  336 (535)
Q Consensus       278 --~---------------~~~~~~~~~~~~l~~~-gV~i-~~~~v~~i~~~~~~~~--~v~~~~~~~G~~~~~~~D~vi~  336 (535)
                        .               ...++.+.+.+.+++. |+++ .++++++++.+ ++.+  .|++.   +|+  ++.+|.||.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~-~~~v~g~v~~~---~g~--~~~ad~vV~  160 (399)
T 2x3n_A           87 LRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRD-ERHAIDQVRLN---DGR--VLRPRVVVG  160 (399)
T ss_dssp             EEEEETTSSCGGGCEEECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEEC-TTSCEEEEEET---TSC--EEEEEEEEE
T ss_pred             EEecchHHhcccCccccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEEc-CCceEEEEEEC---CCC--EEECCEEEE
Confidence              0               0124455666777777 9999 99999999876 4556  77773   676  799999999


Q ss_pred             ccCCCCCC
Q psy14461        337 AMEKKFDF  344 (535)
Q Consensus       337 a~G~~p~~  344 (535)
                      |.|..+..
T Consensus       161 AdG~~s~v  168 (399)
T 2x3n_A          161 ADGIASYV  168 (399)
T ss_dssp             CCCTTCHH
T ss_pred             CCCCChHH
Confidence            99987653

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=98.17  E-value=7e-06  Score=81.47  Aligned_cols=97  Identities=13%  Similarity=0.028  Sum_probs=75.3

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEcCcC------------Ccc-----CcHHHHHHHHHhhhcCCeEE-cceEE
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRL------------LKH-----FDQEMVRILLSSLTKAGVSI-QCCVI  303 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~------------l~~-----~~~~~~~~~~~~l~~~gV~i-~~~~v  303 (535)
                      .+|+|||+|+.|+.+|..|++.|.+|+++++..+            .+.     ..+++.+.+.+.+++.|+++ .+. +
T Consensus         6 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v   84 (320)
T 1trb_A            6 SKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDH-I   84 (320)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEECCC-E
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEccCCCCceEecchhhhhCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEee-e
Confidence            4799999999999999999999999999985211            111     23567777788888899999 876 8


Q ss_pred             EEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCC
Q psy14461        304 EKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAA  346 (535)
Q Consensus       304 ~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~  346 (535)
                      +.++.. ++.+.+ +.   +|+  ++.+|.+++|+|..|....
T Consensus        85 ~~i~~~-~~~~~v-~~---~~~--~~~~~~lv~AtG~~~~~~~  120 (320)
T 1trb_A           85 NKVDLQ-NRPFRL-NG---DNG--EYTCDALIIATGASARYLG  120 (320)
T ss_dssp             EEEECS-SSSEEE-EE---SSC--EEEEEEEEECCCEEECCCC
T ss_pred             eEEEec-CCEEEE-Ee---CCC--EEEcCEEEECCCCCcCCCC
Confidence            888765 355555 43   566  7999999999999887543

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=98.17  E-value=3.7e-06  Score=84.06  Aligned_cols=97  Identities=13%  Similarity=0.014  Sum_probs=75.1

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-----CcC------------Ccc-----CcHHHHHHHHHhhhcCCeEE-
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-----RRL------------LKH-----FDQEMVRILLSSLTKAGVSI-  298 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-----~~~------------l~~-----~~~~~~~~~~~~l~~~gV~i-  298 (535)
                      .+|+|||||+.|+.+|..|++.|.+|+++++     ..+            .+.     ...++...+.+.+++.|+++ 
T Consensus         9 ~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~   88 (333)
T 1vdc_A            9 TRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTTIF   88 (333)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEEE
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccCCCceeeeccccccCCCCccCCCHHHHHHHHHHHHHHCCCEEE
Confidence            4799999999999999999999999999986     111            111     12467777888888899999 


Q ss_pred             cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCC
Q psy14461        299 QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAA  346 (535)
Q Consensus       299 ~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~  346 (535)
                      .+. +..++.. ++.+.|++    +|+  ++.+|.+++|+|..|....
T Consensus        89 ~~~-v~~i~~~-~~~~~v~~----~~~--~~~~~~vv~A~G~~~~~~~  128 (333)
T 1vdc_A           89 TET-VTKVDFS-SKPFKLFT----DSK--AILADAVILAIGAVAKRLS  128 (333)
T ss_dssp             CCC-CCEEECS-SSSEEEEC----SSE--EEEEEEEEECCCEEECCCC
T ss_pred             EeE-EEEEEEc-CCEEEEEE----CCc--EEEcCEEEECCCCCcCCCC
Confidence            876 8888765 34455654    455  7999999999999876543

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=98.16  E-value=9.3e-07  Score=92.29  Aligned_cols=95  Identities=19%  Similarity=0.184  Sum_probs=68.6

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCC--CcEEEEEc-CcCC--ccCc---------HHHHHHHHHhhhcCCeEEcceEEEEE
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLG--VPVTLVYS-RRLL--KHFD---------QEMVRILLSSLTKAGVSIQCCVIEKV  306 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g--~~Vtlv~~-~~~l--~~~~---------~~~~~~~~~~l~~~gV~i~~~~v~~i  306 (535)
                      .|+|||||||+.|+.+|..|++++  .+||||++ +...  |.+.         +++...+.+.+++.||++...++++|
T Consensus         2 ~K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~~~p~l~~v~~g~~~~~~i~~~~~~~~~~~gv~~i~~~v~~I   81 (430)
T 3hyw_A            2 AKHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFTPAFPHLAMGWRKFEDISVPLAPLLPKFNIEFINEKAESI   81 (430)
T ss_dssp             CCEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEECGGGHHHHHHTCSCGGGSEEESTTTGGGGTEEEECSCEEEE
T ss_pred             CCcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCccCccHHHHhcCCCCHHHhhhcHHHHHHHCCcEEEEeEEEEE
Confidence            478999999999999999999876  68999998 5432  2111         11111234456777999933378999


Q ss_pred             EEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCC
Q psy14461        307 ISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFD  343 (535)
Q Consensus       307 ~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~  343 (535)
                      +.+   ..+|++   .+|+  ++++|.+++|+|.++.
T Consensus        82 d~~---~~~V~~---~~g~--~i~YD~LViAtG~~~~  110 (430)
T 3hyw_A           82 DPD---ANTVTT---QSGK--KIEYDYLVIATGPKLV  110 (430)
T ss_dssp             ETT---TTEEEE---TTCC--EEECSEEEECCCCEEE
T ss_pred             ECC---CCEEEE---CCCC--EEECCEEEEeCCCCcc
Confidence            864   235666   3787  8999999999998764

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=98.16  E-value=6.7e-06  Score=81.37  Aligned_cols=99  Identities=16%  Similarity=0.060  Sum_probs=72.2

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc-Cc----C---C---------cc-----CcHHHHHHHHHhhhcCCeEEcc
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RR----L---L---------KH-----FDQEMVRILLSSLTKAGVSIQC  300 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~----~---l---------~~-----~~~~~~~~~~~~l~~~gV~i~~  300 (535)
                      .|+|||||+.|+.+|..++++|.+|+++++ ..    +   +         +.     ..+++.+.+.+.+++.++++..
T Consensus         6 DvvIIG~GpAGl~AA~~la~~g~~v~liE~~~~gg~~~~G~~~~~~~i~~~~g~~~~i~~~~l~~~~~~~~~~~~~~~~~   85 (314)
T 4a5l_A            6 DVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFMAGGVAAGGQLTTTTIIENFPGFPNGIDGNELMMNMRTQSEKYGTTIIT   85 (314)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCCEEECCSSGGGCCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEEEC
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcccCCCcCChHHhhhccCCcccCCHHHHHHHHHHHHhhcCcEEEE
Confidence            699999999999999999999999999987 31    1   0         11     1256777788888888999833


Q ss_pred             eEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCC
Q psy14461        301 CVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAAL  347 (535)
Q Consensus       301 ~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l  347 (535)
                      ..+..+... .+...+..   .++.  ++.+|.+++|||.+|....+
T Consensus        86 ~~v~~~~~~-~~~~~~~~---~~~~--~~~~~~liiATG~~~~~~~i  126 (314)
T 4a5l_A           86 ETIDHVDFS-TQPFKLFT---EEGK--EVLTKSVIIATGATAKRMHV  126 (314)
T ss_dssp             CCEEEEECS-SSSEEEEE---TTCC--EEEEEEEEECCCEEECCCCC
T ss_pred             eEEEEeecC-CCceEEEE---CCCe--EEEEeEEEEcccccccccCC
Confidence            345555443 23344444   3565  89999999999998875443

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=98.16  E-value=6.3e-06  Score=85.35  Aligned_cols=97  Identities=10%  Similarity=0.095  Sum_probs=71.5

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCc--EEEEEc-CcCC---ccCcHHHHH---------HHHHhhhcCCeEE-cceEEEE
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVP--VTLVYS-RRLL---KHFDQEMVR---------ILLSSLTKAGVSI-QCCVIEK  305 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~--Vtlv~~-~~~l---~~~~~~~~~---------~~~~~l~~~gV~i-~~~~v~~  305 (535)
                      ++|+|||||+.|+.+|..|++.|.+  |+++++ +.+.   +.+...+..         ...+.+++.||++ .+++++.
T Consensus         3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~y~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   82 (410)
T 3ef6_A            3 THVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYDRPSLSKAVLDGSLERPPILAEADWYGEARIDMLTGPEVTA   82 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSSBCSGGGGTHHHHTSSSSCCBSSCTTHHHHTTCEEEESCCEEE
T ss_pred             CCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCCcCCccccHHHhCCCCCHHHhcCCHHHHHHCCCEEEeCCEEEE
Confidence            5899999999999999999999987  999998 4321   122221111         1123456679999 9999999


Q ss_pred             EEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCC
Q psy14461        306 VISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAA  346 (535)
Q Consensus       306 i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~  346 (535)
                      ++..   ...|.+   .+|+  ++.+|.+++|+|.+|....
T Consensus        83 id~~---~~~v~~---~~g~--~~~~d~lvlAtG~~p~~~~  115 (410)
T 3ef6_A           83 LDVQ---TRTISL---DDGT--TLSADAIVIATGSRARTMA  115 (410)
T ss_dssp             EETT---TTEEEE---TTSC--EEECSEEEECCCEEECCCC
T ss_pred             EECC---CCEEEE---CCCC--EEECCEEEEccCCcccCCC
Confidence            9754   235666   3676  8999999999999887653

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=98.16  E-value=8.6e-06  Score=87.43  Aligned_cols=100  Identities=16%  Similarity=0.125  Sum_probs=77.9

Q ss_pred             CcEEEECCChHHHHHHHHHH-hCCCcEEEEEc-CcCC--------cc-----------------------------CcHH
Q psy14461        242 GKTLVLGGSLMAVEIAATLN-FLGVPVTLVYS-RRLL--------KH-----------------------------FDQE  282 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~-~~g~~Vtlv~~-~~~l--------~~-----------------------------~~~~  282 (535)
                      .+|+|||||+.|+.+|..|+ +.|.+|+|+++ +.+.        |.                             ..++
T Consensus         9 ~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw~~~~ypg~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~e   88 (540)
T 3gwf_A            9 VDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLLQESTWKTTYITQPE   88 (540)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHHHHCCCTTCEEEEEGGGSSCCSCHHHHHHCCCSBSEEEHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCcccccCCCCceecCCcceeeeccccccccCCCCcccCCCHHH
Confidence            47999999999999999999 89999999998 5431        00                             0246


Q ss_pred             HHHHHHHhhhcCCe--EE-cceEEEEEEEeCC-CcEEEEEecCCCCCceEEEcCEEEEccCC--CCCCCC
Q psy14461        283 MVRILLSSLTKAGV--SI-QCCVIEKVISSFD-GMKGVRGFHPESKEPFADVFKTVVNAMEK--KFDFAA  346 (535)
Q Consensus       283 ~~~~~~~~l~~~gV--~i-~~~~v~~i~~~~~-~~~~v~~~~~~~G~~~~~~~D~vi~a~G~--~p~~~~  346 (535)
                      +.+++.+..++.|+  .+ .+++|++++.+++ +.+.|++   .+|+  ++.+|.||+|+|.  +|....
T Consensus        89 i~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~---~~G~--~i~ad~lV~AtG~~s~p~~p~  153 (540)
T 3gwf_A           89 ILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTT---DHGE--VYRAKYVVNAVGLLSAINFPN  153 (540)
T ss_dssp             HHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEE---TTSC--EEEEEEEEECCCSCCSBCCCC
T ss_pred             HHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEE---cCCC--EEEeCEEEECCcccccCCCCC
Confidence            67778888888888  78 8999999987633 2456776   3677  7999999999994  665443

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.15  E-value=4.7e-06  Score=84.98  Aligned_cols=98  Identities=17%  Similarity=0.114  Sum_probs=70.1

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC---ccCc---------HHHHHHHHHhhhcCCeEE-cceEEEE
Q psy14461        240 WPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL---KHFD---------QEMVRILLSSLTKAGVSI-QCCVIEK  305 (535)
Q Consensus       240 ~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l---~~~~---------~~~~~~~~~~l~~~gV~i-~~~~v~~  305 (535)
                      .+.+++|||||+.|+.+|..|+++| +|+++++ +.+.   +.+.         +++.....+.+++.||++ .+++++.
T Consensus         7 ~~~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~g~~v~~   85 (367)
T 1xhc_A            7 HGSKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEAKL   85 (367)
T ss_dssp             --CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSSCCCCSTTHHHHHTTSSCGGGGCSSCHHHHHHHTEEEECSCCEEE
T ss_pred             CCCcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCCCccccchhHHHHhCCCCHHHhccCCHHHHHhCCcEEEECCEEEE
Confidence            3578999999999999999999999 9999998 5321   1110         111111234456679999 9988998


Q ss_pred             EEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCC
Q psy14461        306 VISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAAL  347 (535)
Q Consensus       306 i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l  347 (535)
                      ++..   ...|+ .   +|+  ++++|.+++|||.+|+...+
T Consensus        86 id~~---~~~V~-~---~g~--~~~~d~lViATGs~p~~p~i  118 (367)
T 1xhc_A           86 IDRG---RKVVI-T---EKG--EVPYDTLVLATGARAREPQI  118 (367)
T ss_dssp             EETT---TTEEE-E---SSC--EEECSEEEECCCEEECCCCS
T ss_pred             EECC---CCEEE-E---CCc--EEECCEEEECCCCCCCCCCC
Confidence            8753   23454 3   566  79999999999999876543

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=98.15  E-value=3.7e-06  Score=88.27  Aligned_cols=100  Identities=10%  Similarity=0.055  Sum_probs=72.0

Q ss_pred             CcEEEECCChHHHHHHHHHHhC--CCcEEEEEc-CcCC--c-cC----c------HHHHHHHHHhhhcCCeEE-cceEEE
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFL--GVPVTLVYS-RRLL--K-HF----D------QEMVRILLSSLTKAGVSI-QCCVIE  304 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~--g~~Vtlv~~-~~~l--~-~~----~------~~~~~~~~~~l~~~gV~i-~~~~v~  304 (535)
                      ++|+|||||+.|+.+|..|++.  |.+|+++++ +.+.  + ..    .      .++.....+.+++.|+++ .+.+++
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~V~   82 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGGLSAYFNHTINELHEARYITEEELRRQKIQLLLNREVV   82 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCSSCCC----------------CCCCHHHHHHTTEEEECSCEEE
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCcccCccchhhhcCCCCCHHHhhcCCHHHHHHCCCEEEECCEEE
Confidence            5899999999999999999998  899999998 5432  1 11    0      111111345567789999 999999


Q ss_pred             EEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCC
Q psy14461        305 KVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAA  346 (535)
Q Consensus       305 ~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~  346 (535)
                      +++.. ++.+.+..    +++..++.+|.+++|+|.+|....
T Consensus        83 ~id~~-~~~v~v~~----~~~~~~~~~d~lviAtG~~p~~p~  119 (452)
T 3oc4_A           83 AMDVE-NQLIAWTR----KEEQQWYSYDKLILATGASQFSTQ  119 (452)
T ss_dssp             EEETT-TTEEEEEE----TTEEEEEECSEEEECCCCCBCCCC
T ss_pred             EEECC-CCEEEEEe----cCceEEEEcCEEEECCCcccCCCC
Confidence            99865 34455542    223348999999999999987653

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=98.13  E-value=1.1e-05  Score=83.30  Aligned_cols=96  Identities=19%  Similarity=0.140  Sum_probs=74.0

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCc-----------------c-------------------------
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLK-----------------H-------------------------  278 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~-----------------~-------------------------  278 (535)
                      .+|+|||||+.|+.+|..|++.|.+|+++++ +.+..                 .                         
T Consensus         5 ~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   84 (401)
T 2gqf_A            5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNWDFI   84 (401)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHHHHH
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccCCHHHHHHHHHhCCHHHHH
Confidence            3699999999999999999999999999998 54310                 0                         


Q ss_pred             ----------------------CcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeC---CCcEEEEEecCCCCCceEEEcC
Q psy14461        279 ----------------------FDQEMVRILLSSLTKAGVSI-QCCVIEKVISSF---DGMKGVRGFHPESKEPFADVFK  332 (535)
Q Consensus       279 ----------------------~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~---~~~~~v~~~~~~~G~~~~~~~D  332 (535)
                                            ...++.+.+.+.+++.||++ .++.++++..++   ++.+.|+.   .+|   ++.+|
T Consensus        85 ~~~~~~Gi~~~~~~~g~~~p~~~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~~~v~~---~~g---~i~ad  158 (401)
T 2gqf_A           85 SLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQV---NST---QWQCK  158 (401)
T ss_dssp             HHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEE---TTE---EEEES
T ss_pred             HHHHhCCCceEECcCCEEccCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCeEEEEE---CCC---EEECC
Confidence                                  12344566777778889999 999999998641   13456655   234   69999


Q ss_pred             EEEEccCCCCC
Q psy14461        333 TVVNAMEKKFD  343 (535)
Q Consensus       333 ~vi~a~G~~p~  343 (535)
                      .||+|+|..+.
T Consensus       159 ~VVlAtG~~s~  169 (401)
T 2gqf_A          159 NLIVATGGLSM  169 (401)
T ss_dssp             EEEECCCCSSC
T ss_pred             EEEECCCCccC
Confidence            99999999884

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=98.13  E-value=3.9e-06  Score=87.59  Aligned_cols=99  Identities=13%  Similarity=0.098  Sum_probs=72.1

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCC--cEEEEEc-CcCC---ccCcH----------HHHHHHHHhhhcCCeEE-cceEE
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLGV--PVTLVYS-RRLL---KHFDQ----------EMVRILLSSLTKAGVSI-QCCVI  303 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g~--~Vtlv~~-~~~l---~~~~~----------~~~~~~~~~l~~~gV~i-~~~~v  303 (535)
                      ..+|+|||||+.|+.+|..|++.|.  +|+++++ +.+.   +.+..          ++.....+.+++.||++ .++.+
T Consensus         4 ~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v   83 (431)
T 1q1r_A            4 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGTQV   83 (431)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECSCCE
T ss_pred             CCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCCCcCCCCcHHHhCCCCChHHhcccCHHHHHhCCCEEEeCCEE
Confidence            3689999999999999999999997  7999998 4321   11111          11111134556789999 99999


Q ss_pred             EEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCC
Q psy14461        304 EKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAAL  347 (535)
Q Consensus       304 ~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l  347 (535)
                      +.++.. +  ..|++.   +|+  ++.+|.+++|+|.+|+...+
T Consensus        84 ~~i~~~-~--~~v~~~---~g~--~~~~d~lviAtG~~p~~~~i  119 (431)
T 1q1r_A           84 TAINRD-R--QQVILS---DGR--ALDYDRLVLATGGRPRPLPV  119 (431)
T ss_dssp             EEEETT-T--TEEEET---TSC--EEECSEEEECCCEEECCCGG
T ss_pred             EEEECC-C--CEEEEC---CCC--EEECCEEEEcCCCCccCCCC
Confidence            999864 2  256663   676  79999999999999876543

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=98.12  E-value=1.6e-05  Score=82.28  Aligned_cols=99  Identities=12%  Similarity=0.017  Sum_probs=74.3

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC--------cc----------------------------------
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL--------KH----------------------------------  278 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l--------~~----------------------------------  278 (535)
                      .+|+|||||.+|+-+|..|++.|.+|+|+++ +.+.        +.                                  
T Consensus         6 ~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~   85 (421)
T 3nix_A            6 VDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFPRFVIGESLLPRCMEHLDEAGFLDAVKAQGFQQKFGAKFVRGKEIA   85 (421)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCCSCCBCCGGGHHHHHHTTCHHHHHHTTCEEECEEEEEETTEEE
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccCcccHhHHHHHHHcCChHHHHHcCCcccCCcEEEeCCeeE
Confidence            4799999999999999999999999999998 4110        00                                  


Q ss_pred             -----------------C-cHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccC
Q psy14461        279 -----------------F-DQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAME  339 (535)
Q Consensus       279 -----------------~-~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G  339 (535)
                                       . ...+.+.+.+.+++.|+++ .+++|++++.+ ++...+.+.. .+|+..++.+|.||.|+|
T Consensus        86 ~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~a~~~gv~i~~~~~v~~i~~~-~~~~~v~v~~-~~g~~~~~~a~~vV~A~G  163 (421)
T 3nix_A           86 DFNFSDQFSNGWNWTWQVPRGNFDKTLADEAARQGVDVEYEVGVTDIKFF-GTDSVTTIED-INGNKREIEARFIIDASG  163 (421)
T ss_dssp             EEETTSCSSCSCCCEEECCHHHHHHHHHHHHHHHTCEEECSEEEEEEEEE-TTEEEEEEEE-TTSCEEEEEEEEEEECCG
T ss_pred             EEeehhhcCCCCCceeEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEe-CCEEEEEEEc-CCCCEEEEEcCEEEECCC
Confidence                             0 0234455666666779999 99999999876 3444444432 477766799999999999


Q ss_pred             CCC
Q psy14461        340 KKF  342 (535)
Q Consensus       340 ~~p  342 (535)
                      ..+
T Consensus       164 ~~s  166 (421)
T 3nix_A          164 YGR  166 (421)
T ss_dssp             GGC
T ss_pred             Cch
Confidence            765

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=98.11  E-value=1.1e-05  Score=82.64  Aligned_cols=102  Identities=9%  Similarity=-0.029  Sum_probs=77.1

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcC-----Cc--c-----------------------------------
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRL-----LK--H-----------------------------------  278 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~-----l~--~-----------------------------------  278 (535)
                      .+|+|||||++|+.+|..|++.|.+|+|+++ +..     ..  .                                   
T Consensus         3 ~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~   82 (394)
T 1k0i_A            3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFAGQ   82 (394)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEETTE
T ss_pred             ccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCcccCCCceEeECHHHHHHHHHcCCcHHHHhcCCccceEEEEECCc
Confidence            3699999999999999999999999999998 531     00  0                                   


Q ss_pred             ------------------CcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccC
Q psy14461        279 ------------------FDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAME  339 (535)
Q Consensus       279 ------------------~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G  339 (535)
                                        ...++.+.+.+.+.+.|+++ .++++++++.++++.+.|++..  +|++.++.+|+||.|.|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~--~g~~~~~~a~~vV~AdG  160 (394)
T 1k0i_A           83 RRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFER--DGERLRLDCDYIAGCDG  160 (394)
T ss_dssp             EEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEE--TTEEEEEECSEEEECCC
T ss_pred             eEEeccccccCCCceEEechHHHHHHHHHHHHhcCCeEEeceeEEEEEEecCCceEEEEec--CCcEEEEEeCEEEECCC
Confidence                              01234455666666779999 9999999986523456777732  67655799999999999


Q ss_pred             CCCCCC
Q psy14461        340 KKFDFA  345 (535)
Q Consensus       340 ~~p~~~  345 (535)
                      ......
T Consensus       161 ~~S~vr  166 (394)
T 1k0i_A          161 FHGISR  166 (394)
T ss_dssp             TTCSTG
T ss_pred             CCcHHH
Confidence            987653

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=98.11  E-value=1.8e-05  Score=85.95  Aligned_cols=34  Identities=15%  Similarity=0.107  Sum_probs=30.5

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCC--CeEEEEecCCc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQ--RRDELQERGSH  122 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~--~~V~lie~~~~  122 (535)
                      .+|+|||+|++|+.+|+.+...+  .+|+|+||...
T Consensus         6 ~DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~~   41 (602)
T 1kf6_A            6 ADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYP   41 (602)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCG
T ss_pred             CCEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCCC
Confidence            57899999999999999888777  89999999864

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=98.10  E-value=5.6e-06  Score=87.35  Aligned_cols=103  Identities=14%  Similarity=0.084  Sum_probs=65.0

Q ss_pred             CCcEEEECCChHHHHHHHHHHhC--CCcEEEEEc-CcC------Ccc-C------cHHH-------HHHHHHhhhcCCeE
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFL--GVPVTLVYS-RRL------LKH-F------DQEM-------VRILLSSLTKAGVS  297 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~--g~~Vtlv~~-~~~------l~~-~------~~~~-------~~~~~~~l~~~gV~  297 (535)
                      .++|+|||||+.|+.+|..|++.  |.+|+++++ +.+      ++. +      ..++       ........++.|++
T Consensus         3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gi~   82 (472)
T 3iwa_A            3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRISYGGCGIPYYVSGEVSNIESLQATPYNVVRDPEFFRINKDVE   82 (472)
T ss_dssp             -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC-------------------------------------------CE
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCcccccccccchhhcCCCCchHHhccccchhccCHHHHhhhcCcE
Confidence            36899999999999999999998  899999998 553      111 1      1111       11222222357999


Q ss_pred             E-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCC
Q psy14461        298 I-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAA  346 (535)
Q Consensus       298 i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~  346 (535)
                      + .++++++++.. +..+.+..  ..+|+..++.+|.+++|+|.+|....
T Consensus        83 ~~~~~~V~~id~~-~~~v~~~~--~~~g~~~~~~~d~lviAtG~~p~~p~  129 (472)
T 3iwa_A           83 ALVETRAHAIDRA-AHTVEIEN--LRTGERRTLKYDKLVLALGSKANRPP  129 (472)
T ss_dssp             EECSEEEEEEETT-TTEEEEEE--TTTCCEEEEECSEEEECCCEEECCCS
T ss_pred             EEECCEEEEEECC-CCEEEEee--cCCCCEEEEECCEEEEeCCCCcCCCC
Confidence            9 99999999865 34333332  12466568999999999999887643

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=98.10  E-value=5e-06  Score=87.18  Aligned_cols=99  Identities=15%  Similarity=0.149  Sum_probs=68.0

Q ss_pred             CCcEEEECCChHHHHHHHHHHhC--CCcEEEEEc-CcCC------ccC------cHHHHHHHHHhh-hcCCeEE-cceEE
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFL--GVPVTLVYS-RRLL------KHF------DQEMVRILLSSL-TKAGVSI-QCCVI  303 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~--g~~Vtlv~~-~~~l------~~~------~~~~~~~~~~~l-~~~gV~i-~~~~v  303 (535)
                      .++|+|||||+.|+.+|..|++.  +.+|+++++ +.+.      |.+      ..++.....+.+ ++.||++ .++++
T Consensus         3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~~~~v   82 (449)
T 3kd9_A            3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAPCGIPYVVEGLSTPDKLMYYPPEVFIKKRGIDLHLNAEV   82 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC------------------------CTHHHHTTCEEETTCEE
T ss_pred             cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccCCcCCccccCCCCCHHHhhhcCHHHHHHhcCcEEEecCEE
Confidence            36899999999999999999998  789999998 5431      111      111222222334 5789999 99999


Q ss_pred             EEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCC
Q psy14461        304 EKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAA  346 (535)
Q Consensus       304 ~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~  346 (535)
                      +.++.   +...|.+   .+| +.++.+|.+++|+|.+|....
T Consensus        83 ~~i~~---~~~~v~~---~~g-~~~~~~d~lviAtG~~p~~p~  118 (449)
T 3kd9_A           83 IEVDT---GYVRVRE---NGG-EKSYEWDYLVFANGASPQVPA  118 (449)
T ss_dssp             EEECS---SEEEEEC---SSS-EEEEECSEEEECCCEEECCCS
T ss_pred             EEEec---CCCEEEE---CCc-eEEEEcCEEEECCCCCCCCCC
Confidence            99864   2344544   233 347999999999999887543

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=98.10  E-value=1.5e-05  Score=81.94  Aligned_cols=98  Identities=18%  Similarity=0.126  Sum_probs=72.2

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc------CcHHHHHHHHH------------------------
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH------FDQEMVRILLS------------------------  289 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~------~~~~~~~~~~~------------------------  289 (535)
                      ..+|+|||||+.|+.+|..|++.|.+|+|+++ +.+.+.      +.+...+.+.+                        
T Consensus         5 ~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~g~   84 (397)
T 2vou_A            5 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDALTGE   84 (397)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEETTTCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCccccccccChhHHHHHHHcCCccccccccccceEEEecCCCC
Confidence            46899999999999999999999999999998 553211      23332222221                        


Q ss_pred             -------------------hhhc--CCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCC
Q psy14461        290 -------------------SLTK--AGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDF  344 (535)
Q Consensus       290 -------------------~l~~--~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~  344 (535)
                                         .|.+  .|+++ .++++++++.+ ++.+.|++.   +|+  ++.+|+||.|.|.....
T Consensus        85 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~-~~~v~v~~~---~g~--~~~ad~vV~AdG~~S~v  155 (397)
T 2vou_A           85 RVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQD-SETVQMRFS---DGT--KAEANWVIGADGGASVV  155 (397)
T ss_dssp             EEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEEC-SSCEEEEET---TSC--EEEESEEEECCCTTCHH
T ss_pred             ccccccCcccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEec-CCEEEEEEC---CCC--EEECCEEEECCCcchhH
Confidence                               1111  37888 99999999876 456777773   676  79999999999987653

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=98.10  E-value=1.1e-05  Score=84.35  Aligned_cols=102  Identities=9%  Similarity=0.116  Sum_probs=69.9

Q ss_pred             cEEEECCChHHHHHHHHHHhCC--CcEEEEEc-CcCC--c-cCcHHH-----------HHHHHHhhhcCCeEE-cceEEE
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLG--VPVTLVYS-RRLL--K-HFDQEM-----------VRILLSSLTKAGVSI-QCCVIE  304 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g--~~Vtlv~~-~~~l--~-~~~~~~-----------~~~~~~~l~~~gV~i-~~~~v~  304 (535)
                      ||+|||||+.|+.+|..|+++|  .+|+++++ +...  + .++..+           .....+.+++.+|++ .+.+++
T Consensus         2 KVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V~   81 (437)
T 4eqs_A            2 KIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYVIGEVVEDRRYALAYTPEKFYDRKQITVKTYHEVI   81 (437)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCSSBCGGGHHHHHTTSSCCGGGTBCCCHHHHHHHHCCEEEETEEEE
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCcchhHHHHcCCccchhhhhhcCHHHHHHhcCCEEEeCCeEE
Confidence            5999999999999999999988  57999998 5321  0 111000           001123345679999 999999


Q ss_pred             EEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCC
Q psy14461        305 KVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAAL  347 (535)
Q Consensus       305 ~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l  347 (535)
                      .|+.. ...+.+...  .+++..++.+|.+++|||.+|+...+
T Consensus        82 ~id~~-~~~~~~~~~--~~~~~~~~~yd~lVIATGs~p~~p~i  121 (437)
T 4eqs_A           82 AINDE-RQTVSVLNR--KTNEQFEESYDKLILSPGASANSLGF  121 (437)
T ss_dssp             EEETT-TTEEEEEET--TTTEEEEEECSEEEECCCEEECCCCC
T ss_pred             EEEcc-CcEEEEEec--cCCceEEEEcCEEEECCCCccccccc
Confidence            99864 233333332  34555579999999999999876543

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=98.09  E-value=4.3e-06  Score=90.79  Aligned_cols=103  Identities=14%  Similarity=0.199  Sum_probs=74.7

Q ss_pred             CCcEEEECCChHHHHHHHHHHhC--CCcEEEEEc-CcCC-cc--C-----------cHHHHHHHHHhhhcCCeEE-cceE
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFL--GVPVTLVYS-RRLL-KH--F-----------DQEMVRILLSSLTKAGVSI-QCCV  302 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~--g~~Vtlv~~-~~~l-~~--~-----------~~~~~~~~~~~l~~~gV~i-~~~~  302 (535)
                      .++|+|||||+.|+.+|..|++.  |.+|+++++ +.+. ..  +           +..+...+....++.|+++ .+++
T Consensus        36 ~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~~~~~~lp~~~~g~~~~~~~~~~~~~~~~~~~~gi~v~~~~~  115 (588)
T 3ics_A           36 SRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYISFANCGLPYYIGGVITERQKLLVQTVERMSKRFNLDIRVLSE  115 (588)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGGHHHHHTTSSCCGGGGBSSCHHHHHHHTTCEEECSEE
T ss_pred             CCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCccccCCCCchhhcCcCCChHHhhccCHHHHHHhcCcEEEECCE
Confidence            47899999999999999999998  889999999 5431 00  0           1112223444556779999 9999


Q ss_pred             EEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCC
Q psy14461        303 IEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAA  346 (535)
Q Consensus       303 v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~  346 (535)
                      +++++.. ++.+.+..  ..+|+..++.+|.+++|+|.+|....
T Consensus       116 V~~id~~-~~~v~v~~--~~~g~~~~~~~d~lviAtG~~p~~p~  156 (588)
T 3ics_A          116 VVKINKE-EKTITIKN--VTTNETYNEAYDVLILSPGAKPIVPS  156 (588)
T ss_dssp             EEEEETT-TTEEEEEE--TTTCCEEEEECSEEEECCCEEECCCC
T ss_pred             EEEEECC-CCEEEEee--cCCCCEEEEeCCEEEECCCCCCCCCC
Confidence            9999865 34344432  23566567899999999999887653

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=98.08  E-value=1.3e-05  Score=84.18  Aligned_cols=103  Identities=10%  Similarity=-0.005  Sum_probs=75.3

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-----CcEEEEEc-CcCC--c-------c-----------------------------
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLG-----VPVTLVYS-RRLL--K-------H-----------------------------  278 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g-----~~Vtlv~~-~~~l--~-------~-----------------------------  278 (535)
                      +|+|||||+.|+.+|..|++.|     .+|+++++ +.+.  +       .                             
T Consensus        32 dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~l~~~~  111 (463)
T 3s5w_A           32 DLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHGNTLVSQSELQISFLKDLVSLRNPTSPYSFVNYLHKHD  111 (463)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCCSSGGGCCSSCBCSSCTTSSSSTTTCTTCTTSHHHHHHHTT
T ss_pred             CEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCCCcCCCCCCCCcCCcchhhccccccCCCCCCChhHhhhhcC
Confidence            7999999999999999999999     99999998 6321  0       0                             


Q ss_pred             -------------CcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCC-Cc---EEEEEecCCCCCceEEEcCEEEEccCC
Q psy14461        279 -------------FDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFD-GM---KGVRGFHPESKEPFADVFKTVVNAMEK  340 (535)
Q Consensus       279 -------------~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~-~~---~~v~~~~~~~G~~~~~~~D~vi~a~G~  340 (535)
                                   ...++.+++....++.++++ .+++|++++..++ ++   +.|++.+ .+|++.++.+|.||+|+|.
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~-g~g~~~~~~~d~lVlAtG~  190 (463)
T 3s5w_A          112 RLVDFINLGTFYPCRMEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRN-ADGEELVRTTRALVVSPGG  190 (463)
T ss_dssp             CHHHHHHHCCSCCBHHHHHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEE-TTSCEEEEEESEEEECCCC
T ss_pred             ceeecccccCCCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEec-CCCceEEEEeCEEEECCCC
Confidence                         02344555666666778899 9999999976411 22   3565543 2355457999999999999


Q ss_pred             CCCCCC
Q psy14461        341 KFDFAA  346 (535)
Q Consensus       341 ~p~~~~  346 (535)
                      .|..+.
T Consensus       191 ~p~~p~  196 (463)
T 3s5w_A          191 TPRIPQ  196 (463)
T ss_dssp             EECCCG
T ss_pred             CCCCcc
Confidence            887543

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.08  E-value=6.5e-06  Score=85.05  Aligned_cols=96  Identities=11%  Similarity=0.120  Sum_probs=70.5

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCC--cEEEEEc-CcCC---ccCc----------HHHHHHHHHhhhcCCeEE-cceEEE
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGV--PVTLVYS-RRLL---KHFD----------QEMVRILLSSLTKAGVSI-QCCVIE  304 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~--~Vtlv~~-~~~l---~~~~----------~~~~~~~~~~l~~~gV~i-~~~~v~  304 (535)
                      ++|+|||||+.|+.+|..|++.|.  +|+++++ +.+.   +.+.          .++.....+.+.+.+|++ . .+++
T Consensus         2 k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~-~~v~   80 (404)
T 3fg2_P            2 DTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRPPLSKAYLKSGGDPNSLMFRPEKFFQDQAIELIS-DRMV   80 (404)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSSSBCSGGGGTGGGGSCCCTTSSBSSCHHHHHHTTEEEEC-CCEE
T ss_pred             CCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCCCCCCccCCHHHHCCCCCHHHccCCCHHHHHhCCCEEEE-EEEE
Confidence            689999999999999999999998  8999998 4221   1111          111122334556789999 8 8999


Q ss_pred             EEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCC
Q psy14461        305 KVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAA  346 (535)
Q Consensus       305 ~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~  346 (535)
                      .++..  + ..|.+.   +|+  ++.+|.+++|+|.+|....
T Consensus        81 ~id~~--~-~~v~~~---~g~--~~~~d~lvlAtG~~p~~~~  114 (404)
T 3fg2_P           81 SIDRE--G-RKLLLA---SGT--AIEYGHLVLATGARNRMLD  114 (404)
T ss_dssp             EEETT--T-TEEEES---SSC--EEECSEEEECCCEEECCCC
T ss_pred             EEECC--C-CEEEEC---CCC--EEECCEEEEeeCCCccCCC
Confidence            99754  2 256663   676  8999999999999877543

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.07  E-value=1.6e-05  Score=85.08  Aligned_cols=100  Identities=14%  Similarity=0.162  Sum_probs=78.2

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-C--cCC-----------c-cCcHHHHHHHHHhhhcCCeEE-cceEEE
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-R--RLL-----------K-HFDQEMVRILLSSLTKAGVSI-QCCVIE  304 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~--~~l-----------~-~~~~~~~~~~~~~l~~~gV~i-~~~~v~  304 (535)
                      ..+|+|||||+.|+.+|..|++.|.+|+++++ .  ...           + ...+++...+.+.+++.|+++ .+++++
T Consensus       212 ~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~v~~~~~v~  291 (521)
T 1hyu_A          212 AYDVLIVGSGPAGAAAAVYSARKGIRTGLMGERFGGQVLDTVDIENYISVPKTEGQKLAGALKAHVSDYDVDVIDSQSAS  291 (521)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSTTGGGTTCSCBCCBTTBSSBCHHHHHHHHHHHHHTSCEEEECSCCEE
T ss_pred             cccEEEECCcHHHHHHHHHHHhCCCeEEEEECCCCCcccccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEcCCEEE
Confidence            45799999999999999999999999999975 1  111           0 123577788888888999999 999999


Q ss_pred             EEEEeC--CCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCC
Q psy14461        305 KVISSF--DGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFA  345 (535)
Q Consensus       305 ~i~~~~--~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~  345 (535)
                      .++.+.  ++...|++   .+|+  ++.+|.+++|+|.+|...
T Consensus       292 ~i~~~~~~~~~~~V~~---~~g~--~~~~d~vVlAtG~~~~~~  329 (521)
T 1hyu_A          292 KLVPAATEGGLHQIET---ASGA--VLKARSIIIATGAKWRNM  329 (521)
T ss_dssp             EEECCSSTTSCEEEEE---TTSC--EEEEEEEEECCCEEECCC
T ss_pred             EEEeccCCCceEEEEE---CCCC--EEEcCEEEECCCCCcCCC
Confidence            997531  12466776   3676  799999999999887643

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=98.06  E-value=3.9e-06  Score=90.62  Aligned_cols=102  Identities=10%  Similarity=0.043  Sum_probs=71.3

Q ss_pred             CcEEEECCChHHHHHHHHHHhC--CCcEEEEEc-CcCC-cc--Cc----------H-HHHHHHHHhhhcCCeEE-cceEE
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFL--GVPVTLVYS-RRLL-KH--FD----------Q-EMVRILLSSLTKAGVSI-QCCVI  303 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~--g~~Vtlv~~-~~~l-~~--~~----------~-~~~~~~~~~l~~~gV~i-~~~~v  303 (535)
                      ++|+|||||+.|+.+|..|++.  +.+|+++++ +.+. ..  ++          . .+........++.|+++ .+++|
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V   81 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVSFANCGLPYHISGEIAQRSALVLQTPESFKARFNVEVRVKHEV   81 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGGHHHHHTSSSCCGGGGBCCCHHHHHHHHCCEEETTEEE
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCccccccCchHHhcCCcCChHHhhccCHHHHHHhcCcEEEECCEE
Confidence            5799999999999999999998  789999998 5431 10  00          0 01111222333468999 99999


Q ss_pred             EEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCC
Q psy14461        304 EKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAA  346 (535)
Q Consensus       304 ~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~  346 (535)
                      ++++.. .+.+.  +.+..+|+..++.+|.+++|||.+|....
T Consensus        82 ~~id~~-~~~v~--~~~~~~g~~~~~~~d~lviAtG~~p~~p~  121 (565)
T 3ntd_A           82 VAIDRA-AKLVT--VRRLLDGSEYQESYDTLLLSPGAAPIVPP  121 (565)
T ss_dssp             EEEETT-TTEEE--EEETTTCCEEEEECSEEEECCCEEECCCC
T ss_pred             EEEECC-CCEEE--EEecCCCCeEEEECCEEEECCCCCCCCCC
Confidence            999865 34333  33223466568999999999999887654

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=98.06  E-value=1.2e-05  Score=83.31  Aligned_cols=36  Identities=11%  Similarity=0.012  Sum_probs=32.5

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLS  124 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~  124 (535)
                      ++|+|||+|++|+.+|+.+...+.+|+|+|+.+.++
T Consensus        28 ~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~~g   63 (417)
T 3v76_A           28 QDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAPG   63 (417)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCC
Confidence            578999999999999999988899999999998653

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=98.06  E-value=9.4e-06  Score=87.21  Aligned_cols=100  Identities=13%  Similarity=0.082  Sum_probs=75.5

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC--------c-----------------------------cCcHHH
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL--------K-----------------------------HFDQEM  283 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l--------~-----------------------------~~~~~~  283 (535)
                      .+|+|||||+.|+.+|..|++.|.+|+|+++ +.+.        |                             ...+++
T Consensus        10 ~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~~~~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~~~~~~~ei   89 (545)
T 3uox_A           10 LDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKGIIPEWEWSENFASQPEM   89 (545)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCHHHHCHHHHTTSSTTCCCSBSSCBHHHH
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCceeecCchhhcccccCcccccCCCccccCCCHHHH
Confidence            4799999999999999999999999999998 5431        0                             013567


Q ss_pred             HHHHHHhhhcCCe--EE-cceEEEEEEEeCC-CcEEEEEecCCCCCceEEEcCEEEEccC--CCCCCCC
Q psy14461        284 VRILLSSLTKAGV--SI-QCCVIEKVISSFD-GMKGVRGFHPESKEPFADVFKTVVNAME--KKFDFAA  346 (535)
Q Consensus       284 ~~~~~~~l~~~gV--~i-~~~~v~~i~~~~~-~~~~v~~~~~~~G~~~~~~~D~vi~a~G--~~p~~~~  346 (535)
                      ..++.+..++.|+  .+ .+++|++++.+++ +.+.|++   .+|+  ++.+|.||+|+|  .+|+...
T Consensus        90 ~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~---~~G~--~~~ad~lV~AtG~~s~p~~p~  153 (545)
T 3uox_A           90 LRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTL---DNEE--VVTCRFLISATGPLSASRMPD  153 (545)
T ss_dssp             HHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEE---TTTE--EEEEEEEEECCCSCBC---CC
T ss_pred             HHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEE---CCCC--EEEeCEEEECcCCCCCCcCCC
Confidence            7777777777777  67 8889999876532 3456776   3676  799999999999  5666543

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=98.05  E-value=2.2e-05  Score=82.37  Aligned_cols=102  Identities=24%  Similarity=0.210  Sum_probs=77.2

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCc----c--------------------------------------
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLK----H--------------------------------------  278 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~----~--------------------------------------  278 (535)
                      -+|+|||||+.|+.+|..|++.|.+|+|+++ +.+..    .                                      
T Consensus         7 ~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~~~~g~~~~g~~l~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~~~   86 (453)
T 3atr_A            7 YDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGDAVSKAHFDKLGMPYPKGEELENKINGIKLYSPDMQT   86 (453)
T ss_dssp             CSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCGGGTTCSCCCCEEEHHHHHHTTCCCCCGGGEEEEEEEEEEECTTSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCcccccccccHHHHHHhcCCCCchHHHHhhhcceEEECCCCce
Confidence            4799999999999999999999999999998 53210    0                                      


Q ss_pred             ----------C-cHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEE-EEEecCCCCCceEEEcCEEEEccCCCCCC
Q psy14461        279 ----------F-DQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKG-VRGFHPESKEPFADVFKTVVNAMEKKFDF  344 (535)
Q Consensus       279 ----------~-~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~-v~~~~~~~G~~~~~~~D~vi~a~G~~p~~  344 (535)
                                + ...+.+.+.+.+.+.|+++ .+++++++..+ ++.+. |++....+|+..++.+|.||.|+|..+..
T Consensus        87 ~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~-~~~v~gv~~~~~~~G~~~~~~ad~VV~AdG~~s~v  164 (453)
T 3atr_A           87 VWTVNGEGFELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIFE-DGYVKGAVLFNRRTNEELTVYSKVVVEATGYSRSF  164 (453)
T ss_dssp             EEEEEEEEEEECHHHHHHHHHHHHHHTTCEEESSEEEEEEEEE-TTEEEEEEEEETTTTEEEEEECSEEEECCGGGCTT
T ss_pred             EEeECCCcEEEcHHHHHHHHHHHHHHcCCEEEeCcEEEEEEEE-CCEEEEEEEEEcCCCceEEEEcCEEEECcCCchhh
Confidence                      0 0245566667777789999 99999999876 45554 66643115655579999999999987654

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=98.05  E-value=1.4e-05  Score=80.11  Aligned_cols=98  Identities=12%  Similarity=0.098  Sum_probs=75.5

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEEcCcC------------CccC-----cHHHHHHHHHhhhcCCeEE-cceE
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRL------------LKHF-----DQEMVRILLSSLTKAGVSI-QCCV  302 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~------------l~~~-----~~~~~~~~~~~l~~~gV~i-~~~~  302 (535)
                      ..+|+|||||+.|+.+|..|++.|.+|+++++..+            .+.+     .+++.+.+.+.+++.|+++ .+. 
T Consensus        14 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~-   92 (335)
T 2a87_A           14 VRDVIVIGSGPAGYTAALYAARAQLAPLVFEGTSFGGALMTTTDVENYPGFRNGITGPELMDEMREQALRFGADLRMED-   92 (335)
T ss_dssp             CEEEEEECCHHHHHHHHHHHHHTTCCCEEECCSSCSCGGGSCSCBCCSTTCTTCBCHHHHHHHHHHHHHHTTCEEECCC-
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCceeccchhhhcCCCCCCCCHHHHHHHHHHHHHHcCCEEEEee-
Confidence            35799999999999999999999999999985111            1111     2567777778888889999 876 


Q ss_pred             EEEEEEeCCCcEEE-EEecCCCCCceEEEcCEEEEccCCCCCCCC
Q psy14461        303 IEKVISSFDGMKGV-RGFHPESKEPFADVFKTVVNAMEKKFDFAA  346 (535)
Q Consensus       303 v~~i~~~~~~~~~v-~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~  346 (535)
                      +.+++.  ++.+.| .+   .+|+  ++.+|.+++|+|..|....
T Consensus        93 v~~i~~--~~~~~v~~~---~~g~--~~~~d~lviAtG~~~~~~~  130 (335)
T 2a87_A           93 VESVSL--HGPLKSVVT---ADGQ--THRARAVILAMGAAARYLQ  130 (335)
T ss_dssp             EEEEEC--SSSSEEEEE---TTSC--EEEEEEEEECCCEEECCCC
T ss_pred             EEEEEe--CCcEEEEEe---CCCC--EEEeCEEEECCCCCccCCC
Confidence            888875  244556 55   3666  7999999999999887543

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=98.04  E-value=2.6e-06  Score=87.75  Aligned_cols=99  Identities=15%  Similarity=0.169  Sum_probs=68.9

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCC--CcEEEEEc-CcCC-ccCcHHHHH---------HHHHhhhcCCeEEcceEEEEEE
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLG--VPVTLVYS-RRLL-KHFDQEMVR---------ILLSSLTKAGVSIQCCVIEKVI  307 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g--~~Vtlv~~-~~~l-~~~~~~~~~---------~~~~~l~~~gV~i~~~~v~~i~  307 (535)
                      +|||+|||||+.|+.+|..|++.+  .+||||++ +... ......+..         .-.+.+.++||++...+++.|+
T Consensus         2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~v~~g~~~~~~~~~~~~~~~~~gv~~i~~~v~~id   81 (401)
T 3vrd_B            2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTCYMSNEVIGGDRELASLRVGYDGLRAHGIQVVHDSALGID   81 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECSTTHHHHHHTSSCGGGGEECSHHHHHTTCEEECSCEEEEE
T ss_pred             cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCccCHHHHhcCCCCHHHHhhCHHHHHHCCCEEEEeEEEEEE
Confidence            689999999999999999998876  58999998 5421 111111110         0012345679999444688887


Q ss_pred             EeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCC
Q psy14461        308 SSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAAL  347 (535)
Q Consensus       308 ~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l  347 (535)
                      .+   ...|.+   .+|+  ++++|.+++|+|.+|+....
T Consensus        82 ~~---~~~v~~---~~g~--~i~yd~LviAtG~~~~~~~i  113 (401)
T 3vrd_B           82 PD---KKLVKT---AGGA--EFAYDRCVVAPGIDLLYDKI  113 (401)
T ss_dssp             TT---TTEEEE---TTSC--EEECSEEEECCCEEECGGGS
T ss_pred             cc---CcEEEe---cccc--eeecceeeeccCCccccCCc
Confidence            64   234555   3777  89999999999998876543

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=98.03  E-value=3.3e-05  Score=83.52  Aligned_cols=100  Identities=14%  Similarity=0.030  Sum_probs=74.5

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc---------------------------------------C--
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH---------------------------------------F--  279 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~---------------------------------------~--  279 (535)
                      .+|+|||+|..|+.+|..|++.|.+|+|+++ +.+...                                       .  
T Consensus       127 ~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~a~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~~~~~~  206 (571)
T 1y0p_A          127 VDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNINDP  206 (571)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSCH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcCceEEeCCCHHHHHhCCCCCHHHHHHHHHHhcCCCCCH
Confidence            4799999999999999999999999999998 543110                                       0  


Q ss_pred             -----------------------------------------------cHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCC
Q psy14461        280 -----------------------------------------------DQEMVRILLSSLTKAGVSI-QCCVIEKVISSFD  311 (535)
Q Consensus       280 -----------------------------------------------~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~  311 (535)
                                                                     ...+.+.+.+.+++.||++ ++++++++..+++
T Consensus       207 ~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~g~~~~r~~~~~~g~~~g~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~  286 (571)
T 1y0p_A          207 ALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDK  286 (571)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEECTT
T ss_pred             HHHHHHHHccHHHHHHHHhcCCCCccCcccCCcCCCeeEecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEeeEeEEcCC
Confidence                                                           0233445556667789999 9999999987632


Q ss_pred             CcEE-EEEecCCCCCceEEEcCEEEEccCCCC
Q psy14461        312 GMKG-VRGFHPESKEPFADVFKTVVNAMEKKF  342 (535)
Q Consensus       312 ~~~~-v~~~~~~~G~~~~~~~D~vi~a~G~~p  342 (535)
                      +++. |.+.. .+|+..++.+|.||+|+|...
T Consensus       287 g~v~Gv~~~~-~~g~~~~i~a~~VVlAtGg~~  317 (571)
T 1y0p_A          287 GTVKGILVKG-MYKGYYWVKADAVILATGGFA  317 (571)
T ss_dssp             SCEEEEEEEE-TTTEEEEEECSEEEECCCCCT
T ss_pred             CeEEEEEEEe-CCCcEEEEECCeEEEeCCCcc
Confidence            5543 55542 267656799999999998754

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=98.03  E-value=2e-05  Score=78.09  Aligned_cols=96  Identities=8%  Similarity=0.008  Sum_probs=68.4

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEcCcC----C--------cc----CcHHHHHHHHHhhhcCCeEE-cceEEEE
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRL----L--------KH----FDQEMVRILLSSLTKAGVSI-QCCVIEK  305 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~----l--------~~----~~~~~~~~~~~~l~~~gV~i-~~~~v~~  305 (535)
                      .|+|||||+.|+.+|..|+++|.+|++++++.+    +        |.    ..+++.........+.++.+ .+.....
T Consensus         8 DvvIIG~GpAGl~aA~~l~~~g~~V~liE~~~~gG~~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (312)
T 4gcm_A            8 DIAIIGAGPAGMTAAVYASRANLKTVMIERGIPGGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQYGDIKSV   87 (312)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTGGGGGCSCBCCSTTCSSBCHHHHHHHHHHHHHHTTCEEEECCCCEE
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCeeecccccCCcCCccccchHHHHHHHHHHHhhccccccceeeeee
Confidence            599999999999999999999999999997321    1        11    12566666666677777777 6655554


Q ss_pred             EEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCC
Q psy14461        306 VISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAA  346 (535)
Q Consensus       306 i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~  346 (535)
                      ....  .. .+..   .+++  ++.+|.+++|||.+|....
T Consensus        88 ~~~~--~~-~~~~---~~~~--~~~~d~liiAtGs~~~~~~  120 (312)
T 4gcm_A           88 EDKG--EY-KVIN---FGNK--ELTAKAVIIATGAEYKKIG  120 (312)
T ss_dssp             EECS--SC-EEEE---CSSC--EEEEEEEEECCCEEECCCC
T ss_pred             eeee--cc-eeec---cCCe--EEEeceeEEcccCccCcCC
Confidence            4432  22 2222   2566  8999999999999887543

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=98.02  E-value=2.1e-05  Score=82.42  Aligned_cols=95  Identities=27%  Similarity=0.277  Sum_probs=74.2

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCc-------------------c------------------C----
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLK-------------------H------------------F----  279 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~-------------------~------------------~----  279 (535)
                      .+|+|||||..|+.+|..|++.|.+|+|+++ +.+..                   .                  +    
T Consensus        27 ~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~~~g~~~~~sg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (447)
T 2i0z_A           27 YDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFNNED  106 (447)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSCHHH
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCCEEEEECCCCCCceeEEeCCCceeccCcccHHHHHHHhccChHHHHHHHHhcCHHH
Confidence            5799999999999999999999999999998 53210                   0                  0    


Q ss_pred             --------------------------cHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCc-EEEEEecCCCCCceEEEc
Q psy14461        280 --------------------------DQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGM-KGVRGFHPESKEPFADVF  331 (535)
Q Consensus       280 --------------------------~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~-~~v~~~~~~~G~~~~~~~  331 (535)
                                                ...+.+.+.+.+++.||++ .+++|+++..+ ++. +.|++   .+|+  ++.+
T Consensus       107 ~~~~~~~~G~~~~~~~~g~~~p~~~~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~-~~~v~~V~~---~~G~--~i~A  180 (447)
T 2i0z_A          107 IITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYE-NGQTKAVIL---QTGE--VLET  180 (447)
T ss_dssp             HHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEE-TTEEEEEEE---TTCC--EEEC
T ss_pred             HHHHHHhcCCceEEeeCCEEECCCCCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEec-CCcEEEEEE---CCCC--EEEC
Confidence                                      0234455666777889999 99999999875 455 55666   3675  7999


Q ss_pred             CEEEEccCCCC
Q psy14461        332 KTVVNAMEKKF  342 (535)
Q Consensus       332 D~vi~a~G~~p  342 (535)
                      |.||+|+|..+
T Consensus       181 d~VVlAtGg~s  191 (447)
T 2i0z_A          181 NHVVIAVGGKS  191 (447)
T ss_dssp             SCEEECCCCSS
T ss_pred             CEEEECCCCCc
Confidence            99999999877

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=98.00  E-value=2.5e-05  Score=81.70  Aligned_cols=102  Identities=14%  Similarity=0.032  Sum_probs=72.0

Q ss_pred             CcEEEECCChHHHHHHHHHHhC--CCcEEEEEc-CcCC--cc-C----------cHHHHHHHHHhhhcCCeEE-cceEEE
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFL--GVPVTLVYS-RRLL--KH-F----------DQEMVRILLSSLTKAGVSI-QCCVIE  304 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~--g~~Vtlv~~-~~~l--~~-~----------~~~~~~~~~~~l~~~gV~i-~~~~v~  304 (535)
                      ++|+|||||+.|+.+|..|++.  |.+|+++++ +.+.  +. .          .+++.....+.+++.||++ .+..+.
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~   80 (447)
T 1nhp_A            1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEIT   80 (447)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCGGGHHHHHTTSSCCGGGSBSCCHHHHHHTTCEEEETEEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccCcccccchhhhcCccCCHHHhhcCCHHHHHHCCCEEEECCEEE
Confidence            3699999999999999999998  899999999 5431  10 0          0111112234566779999 999999


Q ss_pred             EEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCC
Q psy14461        305 KVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAA  346 (535)
Q Consensus       305 ~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~  346 (535)
                      .++.+ ++  .|++.+..+|+..++.+|.+++|+|.+|....
T Consensus        81 ~i~~~-~~--~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~  119 (447)
T 1nhp_A           81 AIQPK-EH--QVTVKDLVSGEERVENYDKLIISPGAVPFELD  119 (447)
T ss_dssp             EEETT-TT--EEEEEETTTCCEEEEECSEEEECCCEEECCCC
T ss_pred             EEeCC-CC--EEEEEecCCCceEEEeCCEEEEcCCCCcCCCC
Confidence            99764 33  34443212465446899999999999887654

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=98.00  E-value=4.8e-05  Score=81.08  Aligned_cols=100  Identities=17%  Similarity=0.149  Sum_probs=75.0

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcC--------Ccc----------------------------------
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRL--------LKH----------------------------------  278 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~--------l~~----------------------------------  278 (535)
                      .+|+|||||..|+-+|..|++.|.+|+|+++ +..        .+.                                  
T Consensus         8 ~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~   87 (512)
T 3e1t_A            8 FDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPRHQIGESLLPATVHGICAMLGLTDEMKRAGFPIKRGGTFRWGKEP   87 (512)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCCSCCBCCHHHHTTHHHHTTCHHHHHTTTCCEECEEEEECSSCS
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCCEEEEccCCCCCCCCCcccCcchHHHHHHHhCcHHHHHHcCCccccCceEEecCCc
Confidence            4799999999999999999999999999998 511        000                                  


Q ss_pred             --------------------C-cHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEE-EEEecCCCCCceEEEcCEEE
Q psy14461        279 --------------------F-DQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKG-VRGFHPESKEPFADVFKTVV  335 (535)
Q Consensus       279 --------------------~-~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~-v~~~~~~~G~~~~~~~D~vi  335 (535)
                                          + ...+.+.+.+.+++.|+++ .+++|+++..+ ++.+. |++.. .+|++.++.+|+||
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~~~~V~~v~~~-~~~v~gv~~~~-~dG~~~~i~ad~VI  165 (512)
T 3e1t_A           88 EPWTFGFTRHPDDPYGFAYQVERARFDDMLLRNSERKGVDVRERHEVIDVLFE-GERAVGVRYRN-TEGVELMAHARFIV  165 (512)
T ss_dssp             SCEEEESSSSSSSTTCCEEBCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEE-TTEEEEEEEEC-SSSCEEEEEEEEEE
T ss_pred             cccccccccCCCCCcceeeEecHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEE-CCEEEEEEEEe-CCCCEEEEEcCEEE
Confidence                                0 0234455666677789999 99999999886 45543 55543 36765689999999


Q ss_pred             EccCCCCC
Q psy14461        336 NAMEKKFD  343 (535)
Q Consensus       336 ~a~G~~p~  343 (535)
                      .|+|....
T Consensus       166 ~AdG~~S~  173 (512)
T 3e1t_A          166 DASGNRTR  173 (512)
T ss_dssp             ECCCTTCS
T ss_pred             ECCCcchH
Confidence            99998643

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=97.99  E-value=1.3e-05  Score=82.93  Aligned_cols=97  Identities=9%  Similarity=0.043  Sum_probs=71.9

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCc--EEEEEc-CcCC---ccCc----------HHHHHHHHHhhhcCCeEE-cceEEE
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVP--VTLVYS-RRLL---KHFD----------QEMVRILLSSLTKAGVSI-QCCVIE  304 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~--Vtlv~~-~~~l---~~~~----------~~~~~~~~~~l~~~gV~i-~~~~v~  304 (535)
                      .+|+|||||+.|+.+|..|++.|.+  |+++++ +.+.   +.+.          .++.....+.+++.||++ .+++++
T Consensus        10 ~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~   89 (415)
T 3lxd_A           10 ADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYERPPLSKEYLAREKTFERICIRPAQFWEDKAVEMKLGAEVV   89 (415)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSCCBCSGGGGTTTTTTSSCSGGGBSSCHHHHHHTTEEEEETCCEE
T ss_pred             CcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCCCcCcccCCHHHHcCCCCHHHhccCCHHHHHHCCcEEEeCCEEE
Confidence            5899999999999999999999976  999998 4321   1111          111122234556789999 999999


Q ss_pred             EEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCC
Q psy14461        305 KVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAA  346 (535)
Q Consensus       305 ~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~  346 (535)
                      .++..   ...|.+   .+|+  ++.+|.+++|+|.+|....
T Consensus        90 ~id~~---~~~v~~---~~g~--~~~~d~lvlAtG~~~~~~~  123 (415)
T 3lxd_A           90 SLDPA---AHTVKL---GDGS--AIEYGKLIWATGGDPRRLS  123 (415)
T ss_dssp             EEETT---TTEEEE---TTSC--EEEEEEEEECCCEECCCCB
T ss_pred             EEECC---CCEEEE---CCCC--EEEeeEEEEccCCccCCCC
Confidence            99753   235666   3676  8999999999999887654

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=97.99  E-value=1.6e-05  Score=82.17  Aligned_cols=97  Identities=15%  Similarity=0.054  Sum_probs=70.6

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCC--cEEEEEc-CcCC---ccCcHHHHH-HHHH-----hhhcCCeEE-cceEEEEEE
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLGV--PVTLVYS-RRLL---KHFDQEMVR-ILLS-----SLTKAGVSI-QCCVIEKVI  307 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g~--~Vtlv~~-~~~l---~~~~~~~~~-~~~~-----~l~~~gV~i-~~~~v~~i~  307 (535)
                      ..+|+|||||+.|+.+|..|++.|.  +|+++++ +.+.   +.+.+.+.. ...+     .+++.|+++ .+++++.++
T Consensus         7 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~   86 (408)
T 2gqw_A            7 KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKRAPEVEWLLGVTAQSFD   86 (408)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSGGGGTHHHHHCCGGGSBCCCTTSCSCEEEETCCEEEEE
T ss_pred             CCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCCcccCCCCCHHHhCCCchhhhhHHHHHHCCCEEEcCCEEEEEE
Confidence            4689999999999999999999987  5999998 5432   122222211 0001     356779999 999999987


Q ss_pred             EeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCC
Q psy14461        308 SSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFA  345 (535)
Q Consensus       308 ~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~  345 (535)
                      ..   ...|++.   +|+  ++.+|.+++|+|.+|...
T Consensus        87 ~~---~~~v~~~---~g~--~~~~d~lviAtG~~~~~~  116 (408)
T 2gqw_A           87 PQ---AHTVALS---DGR--TLPYGTLVLATGAAPRAL  116 (408)
T ss_dssp             TT---TTEEEET---TSC--EEECSEEEECCCEEECCC
T ss_pred             CC---CCEEEEC---CCC--EEECCEEEECCCCCCCCC
Confidence            53   2356663   676  799999999999988764

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=97.98  E-value=2.7e-08  Score=108.69  Aligned_cols=65  Identities=11%  Similarity=-0.018  Sum_probs=47.4

Q ss_pred             hhcCCeEE-cceEEEEEEEeCCC-cE-EEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCee
Q psy14461        291 LTKAGVSI-QCCVIEKVISSFDG-MK-GVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVD  355 (535)
Q Consensus       291 l~~~gV~i-~~~~v~~i~~~~~~-~~-~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~  355 (535)
                      +++.||++ +++.|++|..++++ ++ .|++.+..+|+..++.+|.||+|+|..|++.+|.+...|..
T Consensus       270 ~~~~nv~v~~~~~V~~i~~~~~~~~v~GV~~~~~~~g~~~~i~A~~VIlaaG~~~s~~lL~~sgiG~~  337 (623)
T 3pl8_A          270 APEERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVNSGFGQL  337 (623)
T ss_dssp             EEEEEEEEECSEEEEEEEECTTSSCEEEEEEEETTTCCEEEECEEEEEECSCTTHHHHHHHTTTSSCC
T ss_pred             ccCCCEEEEeCCEEEEEEEECCCCEEEEEEEEEcCCCcEEEEECCEEEEcCCCcCCHHHHHhcCCCcc
Confidence            34458999 99999999875322 33 46665434677778999999999999999887744444443

>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0

Probab=97.98  E-value=8.6e-06  Score=68.30  Aligned_cols=73  Identities=22%  Similarity=0.289  Sum_probs=56.1

Q ss_pred             hhHHHHhhhcCCcEEEEeCCCchhhHHHHHHHHHhcCCcceEEEEEeeCCccHHHHHHHHHhhCCCeE-EEEecCC
Q psy14461         47 PPAYISRLSYENRILIFTHAVLREENARAERYLNARGDRFAVLYLDRIGDEGILLEEELKRQTNQRRD-ELQERGS  121 (535)
Q Consensus        47 l~~~~~~~i~~~~v~v~~k~~cp~~~~~~k~~~~~~~~~~~~~~v~iiG~G~aG~~~al~~~~~~~~V-~lie~~~  121 (535)
                      ....+..++++++|++|++++|| +|.+++.++.+.+.++..++++....+.. +..++....+..+| +++-.+.
T Consensus         6 ~~~~~~~~i~~~~v~vy~~~~Cp-~C~~ak~~L~~~~i~~~~~dvd~~~~~~~-~~~~l~~~~g~~tvP~vfi~g~   79 (114)
T 3h8q_A            6 LRRHLVGLIERSRVVIFSKSYCP-HSTRVKELFSSLGVECNVLELDQVDDGAR-VQEVLSEITNQKTVPNIFVNKV   79 (114)
T ss_dssp             HHHHHHHHHHHCSEEEEECTTCH-HHHHHHHHHHHTTCCCEEEETTTSTTHHH-HHHHHHHHHSCCSSCEEEETTE
T ss_pred             HHHHHHHHhccCCEEEEEcCCCC-cHHHHHHHHHHcCCCcEEEEecCCCChHH-HHHHHHHHhCCCccCEEEECCE
Confidence            45677889999999999999999 99999999999999887777776655444 77777666655554 4443333

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=97.98  E-value=3.2e-05  Score=78.71  Aligned_cols=97  Identities=18%  Similarity=0.121  Sum_probs=72.4

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc------C------------------------------------
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH------F------------------------------------  279 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~------~------------------------------------  279 (535)
                      .|+|||||+.|+-+|..|++.|.+|+|+++ +.+...      +                                    
T Consensus         6 DViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~~~~~~~g~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (397)
T 3oz2_A            6 DVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGSPVRCGEGLSKGILNEADIKADRSFIANEVKGARIYGPSEKRPII   85 (397)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTTCSCCSCCEEETHHHHHTTCCCCTTTEEEEESEEEEECTTCSSCEE
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCceecccCHHHHHHcCCCchhhhhhcccceEEEEeCCCceEee
Confidence            499999999999999999999999999998 543110      0                                    


Q ss_pred             ---------------cHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEE-EEEecCCCCCceEEEcCEEEEccCCCC
Q psy14461        280 ---------------DQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKG-VRGFHPESKEPFADVFKTVVNAMEKKF  342 (535)
Q Consensus       280 ---------------~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~-v~~~~~~~G~~~~~~~D~vi~a~G~~p  342 (535)
                                     ...+...+.+...+.|+++ .+++++.+..+ ++.+. +...  .+|+..++.+|+||.|.|...
T Consensus        86 ~~~~~~~~~~~~~i~R~~~~~~L~~~a~~~G~~~~~~~~v~~~~~~-~~~~~~v~~~--~~~~~~~~~a~~vIgAdG~~S  162 (397)
T 3oz2_A           86 LQSEKAGNEVGYVLERDKFDKHLAALAAKAGADVWVKSPALGVIKE-NGKVAGAKIR--HNNEIVDVRAKMVIAADGFES  162 (397)
T ss_dssp             EECSSSSCCCEEEECHHHHHHHHHHHHHHHTCEEESSCCEEEEEEE-TTEEEEEEEE--ETTEEEEEEEEEEEECCCTTC
T ss_pred             ccccccCCceeEEEEHHHHHHHHHHHHHhcCcEEeeeeeeeeeeec-cceeeeeeec--ccccceEEEEeEEEeCCcccc
Confidence                           0234455666667789999 99999998776 45543 3333  256656799999999999643

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=97.98  E-value=4.1e-05  Score=77.22  Aligned_cols=54  Identities=11%  Similarity=-0.007  Sum_probs=41.0

Q ss_pred             HHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCC
Q psy14461        286 ILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKF  342 (535)
Q Consensus       286 ~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p  342 (535)
                      .+.+.+++.|+++ ++++|+++..++++.+.|.+.   +|+..++.+|.||+|+|...
T Consensus       155 ~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~---~g~~~~~~a~~VV~A~G~~s  209 (369)
T 3dme_A          155 AYQGDAESDGAQLVFHTPLIAGRVRPEGGFELDFG---GAEPMTLSCRVLINAAGLHA  209 (369)
T ss_dssp             HHHHHHHHTTCEEECSCCEEEEEECTTSSEEEEEC---TTSCEEEEEEEEEECCGGGH
T ss_pred             HHHHHHHHCCCEEECCCEEEEEEEcCCceEEEEEC---CCceeEEEeCEEEECCCcch
Confidence            4455567789999 999999998763333667663   67555899999999999753

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=97.95  E-value=1.5e-05  Score=75.70  Aligned_cols=117  Identities=9%  Similarity=-0.094  Sum_probs=68.2

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHH---
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIK---  165 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~---  165 (535)
                      ++|+|||+|++|+.+|+.+...+.+|+|+|+.....+..+ .+.    +.+.               .+..+.....   
T Consensus         4 ~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~~G~~~-~~~----~~~~---------------~~~~~~~~~~d~~   63 (232)
T 2cul_A            4 YQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPF-LPP----KPPF---------------PPGSLLERAYDPK   63 (232)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCS-SCC----CSCC---------------CTTCHHHHHCCTT
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCcCCccc-Ccc----cccc---------------chhhHHhhhccCC
Confidence            4789999999999999999888999999999842211111 010    1100               0000100000   


Q ss_pred             -HHHHHHHHHHHHHHHhc-CcEEEEeEEEEe--cCCE---EEEce-eEEEcceEEEeeCceecC-CCCC
Q psy14461        166 -RFCIRAKNDSMRELKAL-GIDIVRTAAAFT--NPHT---IKLSN-RSVTGFNFLLAVERRCLP-EPRN  225 (535)
Q Consensus       166 -~~~~~~~~~~~~~~~~~-gV~~~~g~~~~~--~~~~---v~~~~-~~~~~d~lViATGs~p~~-~i~G  225 (535)
                       .....+...+.+.+++. |++++..++..+  ++..   +.+.+ .++.+|+||+|||..... .++|
T Consensus        64 g~~~~~~~~~l~~~~~~~~gv~i~~~~v~~i~~~~~~v~~v~~~~g~~i~a~~VV~A~G~~s~~~~~~G  132 (232)
T 2cul_A           64 DERVWAFHARAKYLLEGLRPLHLFQATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFLGARLFLG  132 (232)
T ss_dssp             CCCHHHHHHHHHHHHHTCTTEEEEECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCSSCEEEET
T ss_pred             CCCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCChhhceecC
Confidence             00012223344566675 999886655443  2333   44433 579999999999987655 3344

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=97.94  E-value=9.7e-06  Score=85.03  Aligned_cols=101  Identities=10%  Similarity=0.056  Sum_probs=71.2

Q ss_pred             cEEEECCChHHHHHHHHHHhC--CCcEEEEEc-CcCC--c---------cC----cHHHHHHHHHhhhcCCeEE-cceEE
Q psy14461        243 KTLVLGGSLMAVEIAATLNFL--GVPVTLVYS-RRLL--K---------HF----DQEMVRILLSSLTKAGVSI-QCCVI  303 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~--g~~Vtlv~~-~~~l--~---------~~----~~~~~~~~~~~l~~~gV~i-~~~~v  303 (535)
                      +|+|||||+.|+.+|..|++.  |.+|+++++ +.+.  +         ..    ..++.....+.+++.|+++ .+..+
T Consensus         2 dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v   81 (452)
T 2cdu_A            2 KVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISFLSCGIALYLGKEIKNNDPRGLFYSSPEELSNLGANVQMRHQV   81 (452)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCCBCGGGHHHHHTTCBGGGCGGGGBSCCHHHHHHTTCEEEESEEE
T ss_pred             eEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCcccccchhhhcCCcccCCHHHhhhcCHHHHHHcCCEEEeCCEE
Confidence            699999999999999999998  999999999 5421  0         00    1111112234566789999 99999


Q ss_pred             EEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCC
Q psy14461        304 EKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAA  346 (535)
Q Consensus       304 ~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~  346 (535)
                      ..++.+ ++.  +.+.+..+|+..++.+|.+++|+|.+|....
T Consensus        82 ~~i~~~-~~~--v~v~~~~~g~~~~~~~d~lviAtGs~p~~p~  121 (452)
T 2cdu_A           82 TNVDPE-TKT--IKVKDLITNEEKTEAYDKLIMTTGSKPTVPP  121 (452)
T ss_dssp             EEEEGG-GTE--EEEEETTTCCEEEEECSEEEECCCEEECCCC
T ss_pred             EEEEcC-CCE--EEEEecCCCceEEEECCEEEEccCCCcCCCC
Confidence            999764 333  4443212343347999999999999887654

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=97.94  E-value=4.6e-05  Score=82.58  Aligned_cols=100  Identities=18%  Similarity=0.106  Sum_probs=76.4

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCc------------------------------------------
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLK------------------------------------------  277 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~------------------------------------------  277 (535)
                      ..+|+|||||..|+-+|..|++.|.+|+|+++ +....                                          
T Consensus        23 ~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~~~~~~~G~~l~p~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~  102 (591)
T 3i3l_A           23 RSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPRYRVGESLLPGTMSILNRLGLQEKIDAQNYVKKPSATFLWGQDQ  102 (591)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCCCCCCBCCHHHHHHHHHTTCHHHHHHHCCEEECEEEEECSSSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCCCCCCceeeeECHHHHHHHHHcCCcHHHHhcCCcccCCcEEEecCCC
Confidence            36899999999999999999999999999987 32100                                          


Q ss_pred             ---------------------cC-cHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEE
Q psy14461        278 ---------------------HF-DQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTV  334 (535)
Q Consensus       278 ---------------------~~-~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~v  334 (535)
                                           .+ ...+...+.+.+++.|+++ .+++|+++..++++.+.|++.+  +|+..++.+|.|
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~~g~~~~V~~~~--~G~~~~i~AdlV  180 (591)
T 3i3l_A          103 APWTFSFAAPKVAPWVFDHAVQVKREEFDKLLLDEARSRGITVHEETPVTDVDLSDPDRVVLTVRR--GGESVTVESDFV  180 (591)
T ss_dssp             CCEEEECCCC--CTTCCSCEEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEECCSTTCEEEEEEE--TTEEEEEEESEE
T ss_pred             ccceeecccccccccccCeeEEEcHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEEec--CCceEEEEcCEE
Confidence                                 00 1234556666777889999 9999999986533456677753  675458999999


Q ss_pred             EEccCCCC
Q psy14461        335 VNAMEKKF  342 (535)
Q Consensus       335 i~a~G~~p  342 (535)
                      |.|+|...
T Consensus       181 V~AdG~~S  188 (591)
T 3i3l_A          181 IDAGGSGG  188 (591)
T ss_dssp             EECCGGGC
T ss_pred             EECCCCcc
Confidence            99999764

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=97.92  E-value=4.5e-05  Score=80.29  Aligned_cols=98  Identities=10%  Similarity=-0.023  Sum_probs=70.5

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc-------------------------------Cc-H-------H
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH-------------------------------FD-Q-------E  282 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~-------------------------------~~-~-------~  282 (535)
                      +|+|||||+.|+.+|..|++.|.+|+++++ +.+...                               ++ +       .
T Consensus         6 DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~GG~~~~~gciPsk~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (466)
T 3l8k_A            6 DVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGGNCLYSGCVPSKTVREVIQTAWRLTNIANVKIPLDFSTVQDRKDY   85 (466)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHCSCCCCCHHHHHHHHHH
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCcccccCCCchHHHHHHHHHHHHHHhcccCCCCcCHHHHHHHHHh
Confidence            699999999999999999999999999996 543210                               00 0       0


Q ss_pred             ---HH--HHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCC
Q psy14461        283 ---MV--RILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAAL  347 (535)
Q Consensus       283 ---~~--~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l  347 (535)
                         +.  ..+.+.+++.||++ .+ ++..++   .+.+.|..   .+|+..++.+|.+++|+|.+|....+
T Consensus        86 ~~~l~~~~~~~~~~~~~~v~~~~g-~v~~id---~~~~~V~~---~~g~~~~~~~d~lviAtG~~p~~p~i  149 (466)
T 3l8k_A           86 VQELRFKQHKRNMSQYETLTFYKG-YVKIKD---PTHVIVKT---DEGKEIEAETRYMIIASGAETAKLRL  149 (466)
T ss_dssp             HHHHHHHHHHHHHTTCTTEEEESE-EEEEEE---TTEEEEEE---TTSCEEEEEEEEEEECCCEEECCCCC
T ss_pred             heeccccchHHHHHHhCCCEEEEe-EEEEec---CCeEEEEc---CCCcEEEEecCEEEECCCCCccCCCC
Confidence               11  34455667789999 66 666665   34556665   36763339999999999998876543

>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae}

Probab=97.91  E-value=1.9e-05  Score=67.45  Aligned_cols=63  Identities=19%  Similarity=0.192  Sum_probs=49.7

Q ss_pred             HHHhhhcCCcEEEEeCCCchhhHHHHHHHHHhc---CCcceEEEEEeeCCccHHHHHHHHHhhCCCeE
Q psy14461         50 YISRLSYENRILIFTHAVLREENARAERYLNAR---GDRFAVLYLDRIGDEGILLEEELKRQTNQRRD  114 (535)
Q Consensus        50 ~~~~~i~~~~v~v~~k~~cp~~~~~~k~~~~~~---~~~~~~~~v~iiG~G~aG~~~al~~~~~~~~V  114 (535)
                      .+..+++.++|++|++++|| ||.++++++.+.   +.++.+++|+....|.. +..++...++..+|
T Consensus         6 ~~~~ii~~~~Vvvysk~~Cp-~C~~ak~lL~~~~~~~v~~~~idid~~~d~~~-~~~~l~~~~G~~tV   71 (127)
T 3l4n_A            6 EYSLILDLSPIIIFSKSTCS-YSKGMKELLENEYQFIPNYYIIELDKHGHGEE-LQEYIKLVTGRGTV   71 (127)
T ss_dssp             HHHHHHTSCSEEEEECTTCH-HHHHHHHHHHHHEEEESCCEEEEGGGSTTHHH-HHHHHHHHHSCCSS
T ss_pred             HHHHHHccCCEEEEEcCCCc-cHHHHHHHHHHhcccCCCcEEEEecCCCCHHH-HHHHHHHHcCCCCc
Confidence            44678999999999999999 999999999874   67777778777666444 78888776655443

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=97.91  E-value=4.6e-05  Score=78.65  Aligned_cols=101  Identities=20%  Similarity=0.187  Sum_probs=73.2

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCc-EEEEEc-CcCCcc-----Cc----------------------------------
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVP-VTLVYS-RRLLKH-----FD----------------------------------  280 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~-Vtlv~~-~~~l~~-----~~----------------------------------  280 (535)
                      .+|+|||||++|+.+|..|++.|.+ |+|+++ +.+.+.     +.                                  
T Consensus         5 ~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~lg~~~~l~~~~~~~~~~~~~~~~g~   84 (410)
T 3c96_A            5 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYIDQSGA   84 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHHSEEECEEEEECTTSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCcccceeEEEEChHHHHHHHHCCChHHHHhhCCCcceEEEEcCCCC
Confidence            4799999999999999999999999 999998 543110     00                                  


Q ss_pred             ----------------------HHHHHHHHHhhhc-CC-eEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEE
Q psy14461        281 ----------------------QEMVRILLSSLTK-AG-VSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVV  335 (535)
Q Consensus       281 ----------------------~~~~~~~~~~l~~-~g-V~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi  335 (535)
                                            .++.+.+.+.+.+ .| +++ .++++++++. + +.+.|++.+..+|++.++.+|+||
T Consensus        85 ~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~g~~~v~~~~~v~~i~~-~-~~v~v~~~~~~~g~~~~~~ad~vV  162 (410)
T 3c96_A           85 TVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEE-R-DGRVLIGARDGHGKPQALGADVLV  162 (410)
T ss_dssp             EEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEE-E-TTEEEEEEEETTSCEEEEEESEEE
T ss_pred             EEeeccCCccccCCCCeeeeeHHHHHHHHHHHHHhhCCCcEEEECCEEEEEec-C-CccEEEEecCCCCCceEEecCEEE
Confidence                                  1333445555554 25 589 9999999987 3 457777753223754579999999


Q ss_pred             EccCCCCCC
Q psy14461        336 NAMEKKFDF  344 (535)
Q Consensus       336 ~a~G~~p~~  344 (535)
                      .|.|.....
T Consensus       163 ~AdG~~S~v  171 (410)
T 3c96_A          163 GADGIHSAV  171 (410)
T ss_dssp             ECCCTTCHH
T ss_pred             ECCCccchh
Confidence            999987654

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=97.90  E-value=4.9e-05  Score=82.06  Aligned_cols=101  Identities=16%  Similarity=0.038  Sum_probs=74.4

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc---------------------------------------C--
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH---------------------------------------F--  279 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~---------------------------------------~--  279 (535)
                      -+|+|||+|..|+.+|..|++.|.+|+|+++ +.+...                                       .  
T Consensus       122 ~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~s~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~~~~~~~~  201 (566)
T 1qo8_A          122 TQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQNDI  201 (566)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSCH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcccccCceeEccCCHHHHHhCCCCCHHHHHHHHHHhcCCCCCH
Confidence            3799999999999999999999999999998 532110                                       0  


Q ss_pred             -----------------------------------------------cHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCC
Q psy14461        280 -----------------------------------------------DQEMVRILLSSLTKAGVSI-QCCVIEKVISSFD  311 (535)
Q Consensus       280 -----------------------------------------------~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~  311 (535)
                                                                     ...+...+.+.+++.||++ +++.++++..+++
T Consensus       202 ~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~~~g~~~~r~~~~~~~~~~~~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~  281 (566)
T 1qo8_A          202 KLVTILAEQSADGVQWLESLGANLDDLKRSGGARVDRTHRPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDD  281 (566)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEECSSSSCHHHHHHHHHHHHHHHTTCCEECSEEEEEEEECTT
T ss_pred             HHHHHHHhccHHHHHHHHhcCCccccccccCCCCCCceeecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEEEEEEECCC
Confidence                                                           1123345556667789999 9999999987621


Q ss_pred             CcEE-EEEecCCCCCceEEEcCEEEEccCCCCC
Q psy14461        312 GMKG-VRGFHPESKEPFADVFKTVVNAMEKKFD  343 (535)
Q Consensus       312 ~~~~-v~~~~~~~G~~~~~~~D~vi~a~G~~p~  343 (535)
                      +++. |++.. .+|+..++.+|.||+|+|....
T Consensus       282 g~v~Gv~~~~-~~g~~~~i~A~~VVlAtGg~s~  313 (566)
T 1qo8_A          282 HSVVGAVVHG-KHTGYYMIGAKSVVLATGGYGM  313 (566)
T ss_dssp             SBEEEEEEEE-TTTEEEEEEEEEEEECCCCCTT
T ss_pred             CcEEEEEEEe-CCCcEEEEEcCEEEEecCCccc
Confidence            5543 55542 3676557899999999997554

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=97.88  E-value=7.2e-05  Score=77.05  Aligned_cols=96  Identities=13%  Similarity=0.081  Sum_probs=72.4

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc-----C-----------------------------------
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH-----F-----------------------------------  279 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~-----~-----------------------------------  279 (535)
                      .-+|+|||||++|+-+|..|++.|.+|+|+++ +.+.+.     +                                   
T Consensus        23 ~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~g  102 (407)
T 3rp8_A           23 HMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMETFGGPLRRMAYRDFRSG  102 (407)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSCC----CEEEECHHHHHHHHHTTCHHHHHHHSCCCCEEEEEETTTC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcCeeEEECHHHHHHHHHCCCHHHHHhhcCCCcceEEEECCCC
Confidence            35899999999999999999999999999998 532100     0                                   


Q ss_pred             -----------------------cHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEE
Q psy14461        280 -----------------------DQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVV  335 (535)
Q Consensus       280 -----------------------~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi  335 (535)
                                             ...+.+.+.+.+.+  +++ .+++|++++.+ ++.+.|++.   +|+  ++.+|+||
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~i~~~-~~~v~v~~~---~g~--~~~a~~vV  174 (407)
T 3rp8_A          103 ENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGR--DSVQFGKRVTRCEED-ADGVTVWFT---DGS--SASGDLLI  174 (407)
T ss_dssp             CEEEEEECHHHHHHHSSCCEEEEHHHHHHHHHHHHCG--GGEEESCCEEEEEEE-TTEEEEEET---TSC--EEEESEEE
T ss_pred             CEeEEecchhhhhhcCCceEEEEHHHHHHHHHHhCCc--CEEEECCEEEEEEec-CCcEEEEEc---CCC--EEeeCEEE
Confidence                                   01233344444444  788 99999999887 566777773   777  89999999


Q ss_pred             EccCCCCCC
Q psy14461        336 NAMEKKFDF  344 (535)
Q Consensus       336 ~a~G~~p~~  344 (535)
                      .|.|.....
T Consensus       175 ~AdG~~S~v  183 (407)
T 3rp8_A          175 AADGSHSAL  183 (407)
T ss_dssp             ECCCTTCSS
T ss_pred             ECCCcChHH
Confidence            999987654

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=97.88  E-value=7.2e-05  Score=76.64  Aligned_cols=95  Identities=13%  Similarity=-0.013  Sum_probs=67.8

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc-------CcHHHH------------------------------
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH-------FDQEMV------------------------------  284 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~-------~~~~~~------------------------------  284 (535)
                      +|+|||||+.|+-+|..|++.|.+|+|+++ +.+...       +.+...                              
T Consensus         3 ~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~~~~~~~G~~i~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~   82 (412)
T 4hb9_A            3 HVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSAASSILPGYGIHINSFGKQALQECLPAENWLAFEEASRYIGGQSRFYN   82 (412)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCSSCCCCEEEECHHHHHHHHHHSCHHHHHHHHHHCEEECCCCEEEC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCEEEEecCCCCCcCCCceEEeeCHHHHHHHHHcCChHHHHHhhhhhcccCcceeEec
Confidence            699999999999999999999999999998 543210       111100                              


Q ss_pred             -----------------------------HHHHHhhh-cCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCE
Q psy14461        285 -----------------------------RILLSSLT-KAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKT  333 (535)
Q Consensus       285 -----------------------------~~~~~~l~-~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~  333 (535)
                                                   ..+.+.|. ..+..+ ++.++++++..+++.++|++.   ||+  ++++|+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~v~~~~~v~~~~~~~~~~v~v~~~---dG~--~~~adl  157 (412)
T 4hb9_A           83 ERMRLLAVHGGISPMAGKIISEQRLSISRTELKEILNKGLANTIQWNKTFVRYEHIENGGIKIFFA---DGS--HENVDV  157 (412)
T ss_dssp             TTSCEEEC--------------CEEEEEHHHHHHHHHTTCTTTEECSCCEEEEEECTTSCEEEEET---TSC--EEEESE
T ss_pred             CCcceecccCCccccccccccccceEeeHHHHHHHHHhhccceEEEEEEEEeeeEcCCCeEEEEEC---CCC--EEEeeE
Confidence                                         01122221 123357 788899998765667888884   788  899999


Q ss_pred             EEEccCCCC
Q psy14461        334 VVNAMEKKF  342 (535)
Q Consensus       334 vi~a~G~~p  342 (535)
                      ||-|-|...
T Consensus       158 vVgADG~~S  166 (412)
T 4hb9_A          158 LVGADGSNS  166 (412)
T ss_dssp             EEECCCTTC
T ss_pred             EEECCCCCc
Confidence            999999764

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=97.86  E-value=2.4e-05  Score=83.06  Aligned_cols=100  Identities=17%  Similarity=0.071  Sum_probs=73.6

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCc-------------cCcHHHHHHHHHhhhcCCeEE-cceEEEEE
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLK-------------HFDQEMVRILLSSLTKAGVSI-QCCVIEKV  306 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~-------------~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i  306 (535)
                      .+|+|||||+.|+.+|..|++. .+|+++++ +.+..             ....++...+.+.+ +.|+++ .+..+.++
T Consensus       109 ~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~~~~~~~~~~g~~~~~~~~~~~l~~~l-~~~v~~~~~~~v~~i  186 (493)
T 1y56_A          109 VDVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGDMWLKGIKQEGFNKDSRKVVEELVGKL-NENTKIYLETSALGV  186 (493)
T ss_dssp             ESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSCSGGGTCSEETTTTEEHHHHHHHHHHTC-CTTEEEETTEEECCC
T ss_pred             CCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCCeeeccccccCCCCCCHHHHHHHHHHHH-hcCCEEEcCCEEEEE
Confidence            5799999999999999999999 99999998 65411             11234445555555 679999 99999988


Q ss_pred             EEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCC
Q psy14461        307 ISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAA  346 (535)
Q Consensus       307 ~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~  346 (535)
                      ... +..+.+...  .+++..++.+|.+++|+|..|....
T Consensus       187 ~~~-~~~~~~~~~--~~~~~~~~~~d~lvlAtGa~~~~~~  223 (493)
T 1y56_A          187 FDK-GEYFLVPVV--RGDKLIEILAKRVVLATGAIDSTML  223 (493)
T ss_dssp             EEC-SSSEEEEEE--ETTEEEEEEESCEEECCCEEECCCC
T ss_pred             EcC-CcEEEEEEe--cCCeEEEEECCEEEECCCCCccCCC
Confidence            875 344444332  1454457899999999999887543

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=97.86  E-value=6.3e-05  Score=77.31  Aligned_cols=97  Identities=15%  Similarity=0.121  Sum_probs=70.0

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc-------C-c---H---------------------------
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH-------F-D---Q---------------------------  281 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~-------~-~---~---------------------------  281 (535)
                      ..+|+|||||++|+.+|..|++.|.+|+|+++ +.+...       + .   .                           
T Consensus        26 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~  105 (398)
T 2xdo_A           26 DKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKAGLLQTYYDLALPMGVNIADEK  105 (398)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSSTTCCCCSCCEECCTTTHHHHHHHTTCHHHHHHHCBCCCEEEECSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCccccccCCeeeeCCccHHHHHHhcChHHHHHHhhcccceEEECCC
Confidence            35899999999999999999999999999998 543210       0 0   0                           


Q ss_pred             -----------------------HHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEc
Q psy14461        282 -----------------------EMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNA  337 (535)
Q Consensus       282 -----------------------~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a  337 (535)
                                             .+.+.+.+.+.  ++++ .++++++++.+ ++.+.|++.   +|+  ++.+|.||.|
T Consensus       106 g~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~-~~~v~v~~~---~g~--~~~ad~vV~A  177 (398)
T 2xdo_A          106 GNILSTKNVKPENRFDNPEINRNDLRAILLNSLE--NDTVIWDRKLVMLEPG-KKKWTLTFE---NKP--SETADLVILA  177 (398)
T ss_dssp             SEEEEECCCGGGTTSSCCEECHHHHHHHHHHTSC--TTSEEESCCEEEEEEC-SSSEEEEET---TSC--CEEESEEEEC
T ss_pred             CCchhhccccccCCCCCceECHHHHHHHHHhhcC--CCEEEECCEEEEEEEC-CCEEEEEEC---CCc--EEecCEEEEC
Confidence                                   11112222221  2568 89999999876 456777773   676  6899999999


Q ss_pred             cCCCCCCC
Q psy14461        338 MEKKFDFA  345 (535)
Q Consensus       338 ~G~~p~~~  345 (535)
                      .|......
T Consensus       178 dG~~S~vR  185 (398)
T 2xdo_A          178 NGGMSKVR  185 (398)
T ss_dssp             SCTTCSCC
T ss_pred             CCcchhHH
Confidence            99887654

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=97.86  E-value=0.00011  Score=79.55  Aligned_cols=102  Identities=16%  Similarity=0.110  Sum_probs=74.5

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc---------------------------------------C-
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH---------------------------------------F-  279 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~---------------------------------------~-  279 (535)
                      ..+|+|||+|..|+.+|..|++.|.+|+++++ +.+...                                       . 
T Consensus       126 ~~~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~~~~~~~~~~a~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~~~~~  205 (572)
T 1d4d_A          126 TTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNIND  205 (572)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHSSSCCEEEECSSSSSCTTGGGCCSCEECCSSSTTGGGTCCCCTHHHHHHHHHHTTTCSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcchhhhCCeeEccCCHHHHHhCCCCCHHHHHHHHHHhcCCCCC
Confidence            35799999999999999999999999999987 533100                                       0 


Q ss_pred             ------------------------------------------------cHHHHHHHHHhhhcCCeEE-cceEEEEEEEeC
Q psy14461        280 ------------------------------------------------DQEMVRILLSSLTKAGVSI-QCCVIEKVISSF  310 (535)
Q Consensus       280 ------------------------------------------------~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~  310 (535)
                                                                      ...+...+.+.+++.||++ +++.++++..++
T Consensus       206 ~~~v~~~~~~~~~~i~~l~~~Gv~~~~~~~~gg~~~~r~~~~~~~~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~  285 (572)
T 1d4d_A          206 PELVKVLANNSSDSIDWLTSMGADMTDVGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGTDIRLNSRVVRILEDA  285 (572)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEEC-
T ss_pred             HHHHHHHHHccHHHHHHHHhcCCccccccccCCCcCCeeEecCCCCCCHHHHHHHHHHHHHHcCCeEEecCEEEEEEECC
Confidence                                                            1123344556667789999 999999997652


Q ss_pred             CCcE-EEEEecCCCCCceEEEcCEEEEccCCCCC
Q psy14461        311 DGMK-GVRGFHPESKEPFADVFKTVVNAMEKKFD  343 (535)
Q Consensus       311 ~~~~-~v~~~~~~~G~~~~~~~D~vi~a~G~~p~  343 (535)
                      ++++ .|.+.+ .+|+..++.+|.||+|+|..++
T Consensus       286 ~g~v~GV~~~~-~~G~~~~i~A~~VVlAtGg~~~  318 (572)
T 1d4d_A          286 SGKVTGVLVKG-EYTGYYVIKADAVVIAAGGFAK  318 (572)
T ss_dssp             -CCEEEEEEEE-TTTEEEEEECSEEEECCCCCTT
T ss_pred             CCeEEEEEEEe-CCCcEEEEEcCEEEEeCCCCcc
Confidence            1544 355542 3676567999999999997664

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=97.85  E-value=7.7e-05  Score=80.76  Aligned_cols=107  Identities=16%  Similarity=0.110  Sum_probs=71.5

Q ss_pred             hhhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-Cc-CC-----cc-------------------------
Q psy14461        231 ADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RR-LL-----KH-------------------------  278 (535)
Q Consensus       231 ~~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~-~l-----~~-------------------------  278 (535)
                      +..+.......-+|+|||||..|+++|..+++.|.+|+++++ .. +.     +.                         
T Consensus        11 ~~~~~~~~~~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~c~ps~gGia~~~lv~el~al~g~~~~~~d   90 (641)
T 3cp8_A           11 SSGLVPRGSHMYDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVARMSCNPAIGGVAKGQITREIDALGGEMGKAID   90 (641)
T ss_dssp             ---------CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCSEEECHHHHHHHHHHHHHTCSHHHHHH
T ss_pred             cCCccccccCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccCCCccccchhhhhHHHHHHHHHhcccHHHHHHH
Confidence            333333333335799999999999999999999999999997 41 11     00                         


Q ss_pred             -----------------------Cc-HHHHHHHHHhhhc-CCeEEcceEEEEEEEeCCCcEE-EEEecCCCCCceEEEcC
Q psy14461        279 -----------------------FD-QEMVRILLSSLTK-AGVSIQCCVIEKVISSFDGMKG-VRGFHPESKEPFADVFK  332 (535)
Q Consensus       279 -----------------------~~-~~~~~~~~~~l~~-~gV~i~~~~v~~i~~~~~~~~~-v~~~~~~~G~~~~~~~D  332 (535)
                                             .+ ..+...+.+.+++ .|+++.+..++.+..+ ++.+. |.+   .+|+  ++.+|
T Consensus        91 ~~gi~f~~l~~~kgpav~~~r~~~Dr~~l~~~L~~~l~~~~GV~I~~~~V~~L~~d-~g~V~GV~t---~~G~--~i~Ad  164 (641)
T 3cp8_A           91 ATGIQFRMLNRSKGPAMHSPRAQADKTQYSLYMRRIVEHEPNIDLLQDTVIGVSAN-SGKFSSVTV---RSGR--AIQAK  164 (641)
T ss_dssp             HHEEEEEEECSSSCTTTCEEEEEECHHHHHHHHHHHHHTCTTEEEEECCEEEEEEE-TTEEEEEEE---TTSC--EEEEE
T ss_pred             hcCCchhhcccccCccccchhhhcCHHHHHHHHHHHHHhCCCCEEEeeEEEEEEec-CCEEEEEEE---CCCc--EEEeC
Confidence                                   01 1344556666766 4999933478888765 45554 665   3676  89999


Q ss_pred             EEEEccCCCCC
Q psy14461        333 TVVNAMEKKFD  343 (535)
Q Consensus       333 ~vi~a~G~~p~  343 (535)
                      .||+|+|..++
T Consensus       165 ~VVLATG~~s~  175 (641)
T 3cp8_A          165 AAILACGTFLN  175 (641)
T ss_dssp             EEEECCTTCBT
T ss_pred             EEEECcCCCCC
Confidence            99999998755

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=97.85  E-value=9e-05  Score=77.92  Aligned_cols=99  Identities=17%  Similarity=0.109  Sum_probs=68.4

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEEcCcC---------------------------Ccc----------Cc-HH
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRL---------------------------LKH----------FD-QE  282 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~---------------------------l~~----------~~-~~  282 (535)
                      ..+|+|||||+.|+.+|..|++.|.+|+++++..+                           .+.          .+ ..
T Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~GG~~~~~g~ip~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   83 (467)
T 1zk7_A            4 PVQVAVIGSGGAAMAAALKAVEQGAQVTLIERGTIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDRSK   83 (467)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSTTHHHHHHSHHHHHHHHHHHHHHHHHHCCTTTTTSCCCCCCCCHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCccccCCCccchHHHHHHHHHHHHHhhhhhcCCccCCCCccCHHH
Confidence            35799999999999999999999999999998321                           111          11 11


Q ss_pred             HH-------HHH-----HHhhhcC-CeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCC
Q psy14461        283 MV-------RIL-----LSSLTKA-GVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAA  346 (535)
Q Consensus       283 ~~-------~~~-----~~~l~~~-gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~  346 (535)
                      +.       +.+     .+.+++. ||++ .+ ++..++   .+.+.|.+   .+|+..++++|.+++|+|.+|....
T Consensus        84 ~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g-~~~~~~---~~~~~v~~---~~g~~~~~~~d~lviAtGs~p~~p~  154 (467)
T 1zk7_A           84 LLAQQQARVDELRHAKYEGILGGNPAITVVHG-EARFKD---DQSLTVRL---NEGGERVVMFDRCLVATGASPAVPP  154 (467)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHTTCTTEEEEEE-EEEEEE---TTEEEEEE---TTSSEEEEECSEEEECCCEEECCCC
T ss_pred             HHHHHHHHHHHHhhhhHHHHHhccCCeEEEEE-EEEEcc---CCEEEEEe---CCCceEEEEeCEEEEeCCCCCCCCC
Confidence            11       111     2345566 9999 66 455554   34556665   3674448999999999999887654

>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}

Probab=97.85  E-value=3.4e-05  Score=64.27  Aligned_cols=64  Identities=11%  Similarity=0.093  Sum_probs=50.6

Q ss_pred             ChhHHHHhhhcCCcEEEEeC-----CCchhhHHHHHHHHHhcCCcceEEEEEeeCCccHHHHHHHHHhhCCCeE
Q psy14461         46 TPPAYISRLSYENRILIFTH-----AVLREENARAERYLNARGDRFAVLYLDRIGDEGILLEEELKRQTNQRRD  114 (535)
Q Consensus        46 ~l~~~~~~~i~~~~v~v~~k-----~~cp~~~~~~k~~~~~~~~~~~~~~v~iiG~G~aG~~~al~~~~~~~~V  114 (535)
                      ++..++..++++++|++|+|     ++|| +|.++++++.+.+.++..++|.  .. +. +..++....+..+|
T Consensus         4 ~~~~~v~~~i~~~~Vvlf~kg~~~~~~Cp-~C~~ak~~L~~~gi~y~~~di~--~d-~~-~~~~l~~~~g~~tv   72 (111)
T 3zyw_A            4 DLNLRLKKLTHAAPCMLFMKGTPQEPRCG-FSKQMVEILHKHNIQFSSFDIF--SD-EE-VRQGLKAYSSWPTY   72 (111)
T ss_dssp             CHHHHHHHHHTSSSEEEEESBCSSSBSSH-HHHHHHHHHHHTTCCCEEEEGG--GC-HH-HHHHHHHHHTCCSS
T ss_pred             HHHHHHHHHHhcCCEEEEEecCCCCCcch-hHHHHHHHHHHcCCCeEEEECc--CC-HH-HHHHHHHHHCCCCC
Confidence            57889999999999999999     9999 9999999999999887655543  22 44 67777666554443

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=97.84  E-value=1.8e-05  Score=84.10  Aligned_cols=105  Identities=11%  Similarity=0.190  Sum_probs=69.1

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC--ccC--------c-HHHHHHHHHhh--hcCCeEEcceEEEEEE
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL--KHF--------D-QEMVRILLSSL--TKAGVSIQCCVIEKVI  307 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l--~~~--------~-~~~~~~~~~~l--~~~gV~i~~~~v~~i~  307 (535)
                      ++|||||||+.|+.+|..|++.+.+||||++ +...  |.+        + .++...+.+.+  ++.++++...++++|+
T Consensus        43 prVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~~~~~PlL~~va~G~l~~~~i~~p~~~~~~~~~~~v~~~~~~v~~ID  122 (502)
T 4g6h_A           43 PNVLILGSGWGAISFLKHIDTKKYNVSIISPRSYFLFTPLLPSAPVGTVDEKSIIEPIVNFALKKKGNVTYYEAEATSIN  122 (502)
T ss_dssp             CEEEEECSSHHHHHHHHHSCTTTCEEEEEESSSEEECGGGGGGTTTTSSCGGGGEEEHHHHHTTCSSCEEEEEEEEEEEE
T ss_pred             CCEEEECCcHHHHHHHHHhhhCCCcEEEECCCCCcccccchhHHhhccccHHHhhhhHHHHHHhhcCCeEEEEEEEEEEE
Confidence            4899999999999999999999999999998 5431  211        1 11111122222  3457888555788888


Q ss_pred             EeCCCcEEEEEec-------------CCCCCceEEEcCEEEEccCCCCCCCCC
Q psy14461        308 SSFDGMKGVRGFH-------------PESKEPFADVFKTVVNAMEKKFDFAAL  347 (535)
Q Consensus       308 ~~~~~~~~v~~~~-------------~~~G~~~~~~~D~vi~a~G~~p~~~~l  347 (535)
                      .+ ...+.+....             ...++..++++|.+++|+|.+|+...+
T Consensus       123 ~~-~k~V~l~~~~~~~~~~~~~~~~~~~~~~~~~i~YD~LViAtGs~~~~~~i  174 (502)
T 4g6h_A          123 PD-RNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGAEPNTFGI  174 (502)
T ss_dssp             GG-GTEEEEEEEEEEEECSSSCCCCCCCTTCCEEEECSEEEECCCCEECCTTC
T ss_pred             hh-hCEEEEeecccceeecccccccccccCCceEEeCCEEEEcCCcccccCCc
Confidence            65 3333332210             011233489999999999999987543

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=97.84  E-value=1.4e-05  Score=84.53  Aligned_cols=102  Identities=11%  Similarity=0.123  Sum_probs=70.2

Q ss_pred             CcEEEECCChHHHHHHHHHHhC--CCcEEEEEc-CcCC--c-cCc----------HHHHHHHHHhh-hcCCeEE-cceEE
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFL--GVPVTLVYS-RRLL--K-HFD----------QEMVRILLSSL-TKAGVSI-QCCVI  303 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~--g~~Vtlv~~-~~~l--~-~~~----------~~~~~~~~~~l-~~~gV~i-~~~~v  303 (535)
                      .+|+|||+|+.|+.+|..|++.  |.+|+++++ +.+.  + .++          .++.....+.+ ++.|+++ .+..+
T Consensus        37 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gv~~~~~~~v  116 (480)
T 3cgb_A           37 MNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYAQCGLPYVISGAIASTEKLIARNVKTFRDKYGIDAKVRHEV  116 (480)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCSBCGGGHHHHHTTSSSCGGGGBSSCHHHHHHTTCCEEESSEEE
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCCCCCCcchhhcCCcCCHHHhhhcCHHHHHhhcCCEEEeCCEE
Confidence            5799999999999999999986  899999998 5431  1 010          11111112334 3459999 99999


Q ss_pred             EEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCC
Q psy14461        304 EKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAA  346 (535)
Q Consensus       304 ~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~  346 (535)
                      ..++.+ ++.+.+..  ..+|+..++.+|.+++|+|.+|....
T Consensus       117 ~~i~~~-~~~v~v~~--~~~g~~~~~~~d~lviAtG~~p~~p~  156 (480)
T 3cgb_A          117 TKVDTE-KKIVYAEH--TKTKDVFEFSYDRLLIATGVRPVMPE  156 (480)
T ss_dssp             EEEETT-TTEEEEEE--TTTCCEEEEECSEEEECCCEEECCCC
T ss_pred             EEEECC-CCEEEEEE--cCCCceEEEEcCEEEECCCCcccCCC
Confidence            999764 33343332  12465457999999999999887643

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=97.82  E-value=9.1e-05  Score=79.49  Aligned_cols=98  Identities=14%  Similarity=0.085  Sum_probs=72.3

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC--------c-------------cC----------------cHHH
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL--------K-------------HF----------------DQEM  283 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l--------~-------------~~----------------~~~~  283 (535)
                      .+|+|||+|+.|+.+|..|++.|.+|+++++ +.+.        |             .+                .+++
T Consensus        17 ~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w~~~~~pg~~~d~~~~~~~~~f~~~~~~~~~~~~~~~~~~~i   96 (542)
T 1w4x_A           17 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPEI   96 (542)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHHHH
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccccCCCceeecccccccccccChhhhhccCcccccCCHHHH
Confidence            3799999999999999999999999999998 5421        1             00                1345


Q ss_pred             HHHHHHhhhcCC--eEE-cceEEEEEEEeCC-CcEEEEEecCCCCCceEEEcCEEEEccCC--CCCC
Q psy14461        284 VRILLSSLTKAG--VSI-QCCVIEKVISSFD-GMKGVRGFHPESKEPFADVFKTVVNAMEK--KFDF  344 (535)
Q Consensus       284 ~~~~~~~l~~~g--V~i-~~~~v~~i~~~~~-~~~~v~~~~~~~G~~~~~~~D~vi~a~G~--~p~~  344 (535)
                      .+++....++.+  +++ .+++|++++.+++ +...|++   .+|+  ++.+|.||+|+|.  .|..
T Consensus        97 ~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~---~~G~--~~~ad~vV~AtG~~s~p~~  158 (542)
T 1w4x_A           97 LRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDT---NHGD--RIRARYLIMASGQLSVPQL  158 (542)
T ss_dssp             HHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEE---TTCC--EEEEEEEEECCCSCCCCCC
T ss_pred             HHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEE---CCCC--EEEeCEEEECcCCCCCCCC
Confidence            555555555555  567 8899999987532 3466776   3676  7999999999995  4544

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=97.81  E-value=0.00017  Score=76.50  Aligned_cols=98  Identities=13%  Similarity=0.050  Sum_probs=74.6

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc------------------------------------------
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH------------------------------------------  278 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~------------------------------------------  278 (535)
                      .+|+|||||++|+-+|..|++.|.+|+|+++ +.+...                                          
T Consensus        12 ~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~~   91 (500)
T 2qa1_A           12 AAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTGESRGLGFTARTMEVFDQRGILPRFGEVETSTQGHFGGLPIDFG   91 (500)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-CCCCCSEEECHHHHHHHHTTTCGGGGCSCCBCCEEEETTEEEEGG
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCcceECHHHHHHHHHCCCHHHHHhccccccccccceecccc
Confidence            5799999999999999999999999999997 432100                                          


Q ss_pred             -C-----------cHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCC
Q psy14461        279 -F-----------DQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKF  342 (535)
Q Consensus       279 -~-----------~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p  342 (535)
                       .           ...+.+.+.+.+++.|+++ .++++++++.+ ++.++|++.+ .+| +.++.+|+||.|.|...
T Consensus        92 ~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~-~~~v~v~~~~-~~g-~~~~~a~~vVgADG~~S  165 (500)
T 2qa1_A           92 VLEGAWQAAKTVPQSVTETHLEQWATGLGADIRRGHEVLSLTDD-GAGVTVEVRG-PEG-KHTLRAAYLVGCDGGRS  165 (500)
T ss_dssp             GSTTGGGCEEEEEHHHHHHHHHHHHHHTTCEEEETCEEEEEEEE-TTEEEEEEEE-TTE-EEEEEESEEEECCCTTC
T ss_pred             cCCCCCCceeecCHHHHHHHHHHHHHHCCCEEECCcEEEEEEEc-CCeEEEEEEc-CCC-CEEEEeCEEEECCCcch
Confidence             0           0234455666677789999 99999999887 4667787763 233 34799999999999653

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=97.81  E-value=5.4e-05  Score=79.68  Aligned_cols=98  Identities=14%  Similarity=-0.021  Sum_probs=68.3

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc--------------------------------------Cc-H
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH--------------------------------------FD-Q  281 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~--------------------------------------~~-~  281 (535)
                      .+|+|||||+.|+.+|..|++.|.+|+++++ +.+...                                      .+ +
T Consensus         3 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   82 (468)
T 2qae_A            3 YDVVVIGGGPGGYVASIKAAQLGMKTACVEKRGALGGTCLNVGCIPSKALLHATHLYHDAHANFARYGLMGGEGVTMDSA   82 (468)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEECGGGCEECHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCcCCCcCcHhHHHHHHHHHHHHHHHHHHHhcCcccCCCCccCHH
Confidence            3699999999999999999999999999999 543100                                      00 0


Q ss_pred             H-----------HHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCC
Q psy14461        282 E-----------MVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAA  346 (535)
Q Consensus       282 ~-----------~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~  346 (535)
                      .           +...+.+.+++.||++ .+..+ .++   .+.+.|..   .+|+..++.+|.+++|+|.+|....
T Consensus        83 ~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~-~i~---~~~~~v~~---~~G~~~~~~~d~lviAtG~~p~~p~  152 (468)
T 2qae_A           83 KMQQQKERAVKGLTGGVEYLFKKNKVTYYKGEGS-FET---AHSIRVNG---LDGKQEMLETKKTIIATGSEPTELP  152 (468)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEE-EEE---TTEEEEEE---TTSCEEEEEEEEEEECCCEEECCBT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEE-Eee---CCEEEEEe---cCCceEEEEcCEEEECCCCCcCCCC
Confidence            1           1112244566678999 77644 343   34556655   3664347999999999999887543

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=97.81  E-value=0.00017  Score=76.54  Aligned_cols=99  Identities=13%  Similarity=0.099  Sum_probs=75.3

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc-----------------------------------------
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH-----------------------------------------  278 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~-----------------------------------------  278 (535)
                      ..+|+|||||++|+-+|..|++.|.+|+|+++ +.+...                                         
T Consensus        12 ~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~   91 (499)
T 2qa2_A           12 DASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGESRGLGFTARTMEVFDQRGILPAFGPVETSTQGHFGGRPVDF   91 (499)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSCCCCCCSEEECHHHHHHHHHTTCGGGGCSCCEESEEEETTEEEEG
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCceeEECHHHHHHHHHCCCHHHHHhccccccceecceeccc
Confidence            35799999999999999999999999999997 432100                                         


Q ss_pred             ------C-------cHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCC
Q psy14461        279 ------F-------DQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKF  342 (535)
Q Consensus       279 ------~-------~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p  342 (535)
                            .       ...+.+.+.+.+++.|+++ .++++++++.+ ++.++|++.+ .+| +.++.+|+||.|.|...
T Consensus        92 ~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~-~~~v~v~~~~-~~g-~~~~~a~~vVgADG~~S  166 (499)
T 2qa2_A           92 GVLEGAHYGVKAVPQSTTESVLEEWALGRGAELLRGHTVRALTDE-GDHVVVEVEG-PDG-PRSLTTRYVVGCDGGRS  166 (499)
T ss_dssp             GGSTTCCCEEEEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEEEC-SSCEEEEEEC-SSC-EEEEEEEEEEECCCTTC
T ss_pred             ccCCCCCCceEecCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEe-CCEEEEEEEc-CCC-cEEEEeCEEEEccCccc
Confidence                  0       0234455666677789999 99999999876 4567788763 233 35799999999999653

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=97.81  E-value=8.7e-05  Score=80.39  Aligned_cols=97  Identities=18%  Similarity=0.110  Sum_probs=71.5

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-Cc-CC-----c------------------c------------------
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RR-LL-----K------------------H------------------  278 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~-~l-----~------------------~------------------  278 (535)
                      -+|+|||||..|+++|..+++.|.+|+|+++ .. +.     +                  .                  
T Consensus        29 yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~Cnps~ggia~~~lv~ei~algg~~~~~~d~~gi~f~~l~~  108 (651)
T 3ces_A           29 FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQFRILNA  108 (651)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSSSEEESTTHHHHHHHHHHTTCSHHHHHHHHEEEEEEEST
T ss_pred             CCEEEECChHHHHHHHHHHHhCCCCEEEEeecccccccccccccccchhhHHHHHHHHHhccHHHHHhhhcccchhhhhc
Confidence            3799999999999999999999999999997 31 10     0                  0                  


Q ss_pred             ------------Cc-HHHHHHHHHhhhc-CCeEEcceEEEEEEEeCCCcE-EEEEecCCCCCceEEEcCEEEEccCCCCC
Q psy14461        279 ------------FD-QEMVRILLSSLTK-AGVSIQCCVIEKVISSFDGMK-GVRGFHPESKEPFADVFKTVVNAMEKKFD  343 (535)
Q Consensus       279 ------------~~-~~~~~~~~~~l~~-~gV~i~~~~v~~i~~~~~~~~-~v~~~~~~~G~~~~~~~D~vi~a~G~~p~  343 (535)
                                  .+ ..+...+.+.+++ .|+++.+..++.+..+ ++.+ .|.+   .+|.  ++.+|.||+|+|..++
T Consensus       109 ~kgpav~~~r~~~Dr~~~~~~L~e~Le~~~GV~I~~~~V~~L~~e-~g~V~GV~t---~dG~--~I~Ad~VVLATGt~s~  182 (651)
T 3ces_A          109 SKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVEDLIVE-NDRVVGAVT---QMGL--KFRAKAVVLTVGTFLD  182 (651)
T ss_dssp             TSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEEECCEEEEEES-SSBEEEEEE---TTSE--EEEEEEEEECCSTTTC
T ss_pred             ccCcccccchhhCCHHHHHHHHHHHHHhCCCCEEEEEEEEEEEec-CCEEEEEEE---CCCC--EEECCEEEEcCCCCcc
Confidence                        01 1345556667777 6999944688888765 4544 4665   3675  7999999999998764


Q ss_pred             C
Q psy14461        344 F  344 (535)
Q Consensus       344 ~  344 (535)
                      .
T Consensus       183 ~  183 (651)
T 3ces_A          183 G  183 (651)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=97.80  E-value=0.00011  Score=78.58  Aligned_cols=98  Identities=22%  Similarity=0.148  Sum_probs=74.7

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCc-------------------------------------------
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLK-------------------------------------------  277 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~-------------------------------------------  277 (535)
                      .+|+|||||++|+-+|..|++.|.+|+|+++ +.+..                                           
T Consensus         6 ~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~~   85 (535)
T 3ihg_A            6 VDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPYPRAAGQNPRTMELLRIGGVADEVVRADDIRGTQGDFVIRLAE   85 (535)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSSCCCCCCSCCBCHHHHHHHHHTTCHHHHHHSCCSSCTTSCCEEEEES
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCccceECHHHHHHHHHcCCHHHHHhhCCCcccccceeeeEEe
Confidence            4799999999999999999999999999998 42200                                           


Q ss_pred             ------------cC-------------------cHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCC----cEEEEEecC
Q psy14461        278 ------------HF-------------------DQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDG----MKGVRGFHP  321 (535)
Q Consensus       278 ------------~~-------------------~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~----~~~v~~~~~  321 (535)
                                  .+                   ...+...+.+.+++.|+++ .++++++++.+ ++    .+++++.+ 
T Consensus        86 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~-~~~~~~~v~v~~~~-  163 (535)
T 3ihg_A           86 SVRGEILRTVSESFDDMVAATEPCTPAGWAMLSQDKLEPILLAQARKHGGAIRFGTRLLSFRQH-DDDAGAGVTARLAG-  163 (535)
T ss_dssp             SSSSCEEEEEESCHHHHHHTTGGGCSCCCBCCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEE-CGGGCSEEEEEEEE-
T ss_pred             ccCCceeeeccccccccccccccCCCCcccccCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEC-CCCccccEEEEEEc-
Confidence                        00                   1234455666777789999 99999999887 45    67777753 


Q ss_pred             CCCCceEEEcCEEEEccCCCC
Q psy14461        322 ESKEPFADVFKTVVNAMEKKF  342 (535)
Q Consensus       322 ~~G~~~~~~~D~vi~a~G~~p  342 (535)
                      .+| +.++.+|+||.|.|...
T Consensus       164 ~~~-~~~i~a~~vV~AdG~~S  183 (535)
T 3ihg_A          164 PDG-EYDLRAGYLVGADGNRS  183 (535)
T ss_dssp             TTE-EEEEEEEEEEECCCTTC
T ss_pred             CCC-eEEEEeCEEEECCCCcc
Confidence            122 34899999999999753

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=97.79  E-value=0.00016  Score=78.10  Aligned_cols=97  Identities=15%  Similarity=0.135  Sum_probs=71.6

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-C-cCC-----cc--------C---------------------------
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-R-RLL-----KH--------F---------------------------  279 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~-~~l-----~~--------~---------------------------  279 (535)
                      -+|+|||||..|+++|..+++.|.+|.|+++ . .+.     +.        +                           
T Consensus        28 yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~iG~~~Cnps~GGia~g~lv~eldalgg~~~~~~d~~gi~f~~l~~  107 (637)
T 2zxi_A           28 FDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDALGGEMGKAIDQTGIQFKMLNT  107 (637)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCCSCSEEECTTHHHHHHHHHHHTCSHHHHHHHHEEEEEEEST
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEEecccccCCcCccccccccchHHHHHHHHHhhhHHHHHhhhcccceeeccc
Confidence            4799999999999999999999999999997 3 111     00        0                           


Q ss_pred             -------------c-HHHHHHHHHhhhc-CCeEEcceEEEEEEEeCCCcE-EEEEecCCCCCceEEEcCEEEEccCCCCC
Q psy14461        280 -------------D-QEMVRILLSSLTK-AGVSIQCCVIEKVISSFDGMK-GVRGFHPESKEPFADVFKTVVNAMEKKFD  343 (535)
Q Consensus       280 -------------~-~~~~~~~~~~l~~-~gV~i~~~~v~~i~~~~~~~~-~v~~~~~~~G~~~~~~~D~vi~a~G~~p~  343 (535)
                                   + ..+...+.+.+++ .|+++.+..|+++..+ ++.+ .|.+   .+|+  ++.+|.||+|+|..++
T Consensus       108 ~kGpav~~~r~~~Dr~~~~~~L~~~Le~~~GVeI~~~~Vt~L~~e-~g~V~GV~t---~dG~--~i~AdaVVLATG~~s~  181 (637)
T 2zxi_A          108 RKGKAVQSPRAQADKKRYREYMKKVCENQENLYIKQEEVVDIIVK-NNQVVGVRT---NLGV--EYKTKAVVVTTGTFLN  181 (637)
T ss_dssp             TSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEEESCEEEEEES-SSBEEEEEE---TTSC--EEECSEEEECCTTCBT
T ss_pred             ccCccccchhhhCCHHHHHHHHHHHHHhCCCCEEEEeEEEEEEec-CCEEEEEEE---CCCc--EEEeCEEEEccCCCcc
Confidence                         0 1244556666766 5999944688888765 4554 3665   3676  7999999999998765


Q ss_pred             C
Q psy14461        344 F  344 (535)
Q Consensus       344 ~  344 (535)
                      .
T Consensus       182 ~  182 (637)
T 2zxi_A          182 G  182 (637)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=97.76  E-value=6.9e-05  Score=76.25  Aligned_cols=53  Identities=13%  Similarity=-0.001  Sum_probs=40.2

Q ss_pred             HHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCC
Q psy14461        283 MVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKF  342 (535)
Q Consensus       283 ~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p  342 (535)
                      +.+.+.+.+++.|+++ .+++|++++.+ ++.+.|++   .+|   ++.+|.||+|+|...
T Consensus       166 ~~~~l~~~~~~~g~~i~~~~~v~~i~~~-~~~~~v~~---~~g---~~~a~~vV~A~G~~s  219 (382)
T 1ryi_A          166 VCKAYVKAAKMLGAEIFEHTPVLHVERD-GEALFIKT---PSG---DVWANHVVVASGVWS  219 (382)
T ss_dssp             HHHHHHHHHHHTTCEEETTCCCCEEECS-SSSEEEEE---TTE---EEEEEEEEECCGGGT
T ss_pred             HHHHHHHHHHHCCCEEEcCCcEEEEEEE-CCEEEEEc---CCc---eEEcCEEEECCChhH
Confidence            4455666777889999 99999999875 45565655   244   689999999999854

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=97.76  E-value=7.7e-05  Score=80.53  Aligned_cols=97  Identities=14%  Similarity=0.133  Sum_probs=74.2

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC-------------------------------------c-----c
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL-------------------------------------K-----H  278 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l-------------------------------------~-----~  278 (535)
                      -+|+|||||++|+-+|..|++.|.+|+|+++ +.+.                                     .     .
T Consensus        50 ~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~~~~~~r~~~l~~~s~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~  129 (570)
T 3fmw_A           50 TDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPVGHDRAGALHIRTVETLDLRGLLDRFLEGTQVAKGLPFAGIFTQG  129 (570)
T ss_dssp             -CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSCCCSSSCCCBCHHHHHHHHTTTCHHHHTTSCCBCSBCCBTTBCTTC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCCCceEEEECHHHHHHHHHcCChHHHHhcCcccCCceeCCccccc
Confidence            4799999999999999999999999999997 4211                                     0     0


Q ss_pred             C----------------cHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCC
Q psy14461        279 F----------------DQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKK  341 (535)
Q Consensus       279 ~----------------~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~  341 (535)
                      +                ...+.+.+.+.+++.|+++ .+++|++++.+ ++.+.|++.. .+|+ .++.+|+||.|.|..
T Consensus       130 ~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~-~~~v~v~~~~-~~G~-~~~~a~~vV~ADG~~  206 (570)
T 3fmw_A          130 LDFGLVDTRHPYTGLVPQSRTEALLAEHAREAGAEIPRGHEVTRLRQD-AEAVEVTVAG-PSGP-YPVRARYGVGCDGGR  206 (570)
T ss_dssp             CBGGGSCCSCCSBBCCCHHHHHHHHHHHHHHHTEECCBSCEEEECCBC-SSCEEEEEEE-TTEE-EEEEESEEEECSCSS
T ss_pred             ccccccCCCCCeeEEeCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCeEEEEEEe-CCCc-EEEEeCEEEEcCCCC
Confidence            0                1345566667777779999 99999999876 4567777742 2562 379999999999964

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.75  E-value=5.5e-05  Score=79.63  Aligned_cols=98  Identities=16%  Similarity=0.054  Sum_probs=68.4

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc-------------------------------------Cc-HH
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH-------------------------------------FD-QE  282 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~-------------------------------------~~-~~  282 (535)
                      .+|+|||||+.|+.+|..|++.|.+|+++++ +.+...                                     .+ +.
T Consensus         7 ~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   86 (470)
T 1dxl_A            7 NDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNVEIDLAA   86 (470)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEESCEEECHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCccccccCcCccchHHHHHHHHHHHHHHHHHHhcCcccCCCccCHHH
Confidence            5799999999999999999999999999999 544110                                     00 00


Q ss_pred             -----------HHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCC
Q psy14461        283 -----------MVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAA  346 (535)
Q Consensus       283 -----------~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~  346 (535)
                                 +...+.+.+++.||++ .+..+. ++   .+.+.|.+   .+|+..++.+|.+|+|+|.+|....
T Consensus        87 ~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~-~~---~~~~~v~~---~~G~~~~i~~d~lIiAtGs~p~~p~  155 (470)
T 1dxl_A           87 MMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKF-VS---PSEISVDT---IEGENTVVKGKHIIIATGSDVKSLP  155 (470)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEE-EE---TTEEEECC---SSSCCEEEECSEEEECCCEEECCBT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEE-ec---CCEEEEEe---CCCceEEEEcCEEEECCCCCCCCCC
Confidence                       1112344556679999 887653 32   34455544   3563347999999999999887643

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=97.75  E-value=0.00027  Score=69.05  Aligned_cols=37  Identities=11%  Similarity=0.024  Sum_probs=32.8

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhC-CCeEEEEecCCccc
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTN-QRRDELQERGSHLS  124 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~-~~~V~lie~~~~~~  124 (535)
                      .++|+|||+|++|+.+|+.+... +.+|+|+|+.+.++
T Consensus        39 ~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~g   76 (284)
T 1rp0_A           39 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPG   76 (284)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCC
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCC
Confidence            47899999999999999988886 89999999988653

>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}

Probab=97.75  E-value=6.4e-05  Score=63.62  Aligned_cols=65  Identities=12%  Similarity=0.038  Sum_probs=49.2

Q ss_pred             hhHHHHhhhcCCcEEEEeCC-----CchhhHHHHHHHHHhcCCcce-EEEEEeeCCccHHHHHHHHHhhCCCeE
Q psy14461         47 PPAYISRLSYENRILIFTHA-----VLREENARAERYLNARGDRFA-VLYLDRIGDEGILLEEELKRQTNQRRD  114 (535)
Q Consensus        47 l~~~~~~~i~~~~v~v~~k~-----~cp~~~~~~k~~~~~~~~~~~-~~~v~iiG~G~aG~~~al~~~~~~~~V  114 (535)
                      ...++..++++++|++|+|+     +|| ||.++++++.+.+..+. +..++ |..++. +..++....+..+|
T Consensus         5 ~~~~v~~~i~~~~Vvvfsk~t~~~p~Cp-~C~~ak~lL~~~gv~~~~~~~~d-v~~~~~-~~~~l~~~sg~~tv   75 (121)
T 3gx8_A            5 IRKAIEDAIESAPVVLFMKGTPEFPKCG-FSRATIGLLGNQGVDPAKFAAYN-VLEDPE-LREGIKEFSEWPTI   75 (121)
T ss_dssp             HHHHHHHHHHSCSEEEEESBCSSSBCTT-HHHHHHHHHHHHTBCGGGEEEEE-CTTCHH-HHHHHHHHHTCCSS
T ss_pred             HHHHHHHHhccCCEEEEEeccCCCCCCc-cHHHHHHHHHHcCCCcceEEEEE-ecCCHH-HHHHHHHHhCCCCC
Confidence            56788999999999999997     999 99999999999997732 22333 334455 77788776655544

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.75  E-value=0.00013  Score=76.56  Aligned_cols=97  Identities=21%  Similarity=0.077  Sum_probs=68.2

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEcCcCC---------c---------------------------cCc-H---
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLL---------K---------------------------HFD-Q---  281 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~l---------~---------------------------~~~-~---  281 (535)
                      .+|+|||||+.|+.+|..|++.|.+|+++++..+.         |                           ..+ +   
T Consensus         4 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~gG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~   83 (455)
T 1ebd_A            4 TETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGNLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAENVTIDFAKVQ   83 (455)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECCSCEECHHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCcCcCcCchhhHHHHHHHHHHHHHHHHHhcCcccCCCccCHHHHH
Confidence            46999999999999999999999999999984211         0                           000 0   


Q ss_pred             --------HHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCC
Q psy14461        282 --------EMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAA  346 (535)
Q Consensus       282 --------~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~  346 (535)
                              .+.+.+.+.+++.||++ .+..+. ++   .+.+.|..   .+|+ .++.+|.+++|+|.+|....
T Consensus        84 ~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~-id---~~~v~V~~---~~G~-~~i~~d~lViATGs~p~~~~  149 (455)
T 1ebd_A           84 EWKASVVKKLTGGVEGLLKGNKVEIVKGEAYF-VD---ANTVRVVN---GDSA-QTYTFKNAIIATGSRPIELP  149 (455)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTCEEEESEEEE-EE---TTEEEEEE---TTEE-EEEECSEEEECCCEEECCBT
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE-cc---CCeEEEEe---CCCc-EEEEeCEEEEecCCCCCCCC
Confidence                    12222345667789999 877553 43   34556655   2552 37999999999999887643

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=97.75  E-value=0.00017  Score=76.25  Aligned_cols=95  Identities=19%  Similarity=0.054  Sum_probs=65.5

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc----------------------------C---------c---
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH----------------------------F---------D---  280 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~----------------------------~---------~---  280 (535)
                      .+|+|||||+.|+.+|..|+++|.+|+++++ +.+...                            +         +   
T Consensus        26 ~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~GG~~~~~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  105 (491)
T 3urh_A           26 YDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRSTYGGTCLNVGCIPSKALLHASEMFHQAQHGLEALGVEVANPKLNLQK  105 (491)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHSSGGGTEECCCCEECHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCccccccchhhHHHHHHHHHHHHHHhhHhhcCcccCCCccCHHH
Confidence            5799999999999999999999999999998 654210                            0         0   


Q ss_pred             ---------HHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCC
Q psy14461        281 ---------QEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFD  343 (535)
Q Consensus       281 ---------~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~  343 (535)
                               ..+...+...+++.+|++ .+.... +.   .+.+.|..   .+|+..++.+|.+++|||.+|.
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~-~~---~~~~~v~~---~~g~~~~~~~d~lViATGs~p~  171 (491)
T 3urh_A          106 MMAHKDATVKSNVDGVSFLFKKNKIDGFQGTGKV-LG---QGKVSVTN---EKGEEQVLEAKNVVIATGSDVA  171 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEE-CS---SSEEEEEC---TTSCEEEEECSEEEECCCEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE-ec---CCEEEEEe---CCCceEEEEeCEEEEccCCCCC
Confidence                     011122334456778888 655322 21   34455553   3665568999999999998874

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=97.72  E-value=9.9e-05  Score=78.34  Aligned_cols=125  Identities=11%  Similarity=-0.026  Sum_probs=69.5

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccccccccccccccc-----chhhcccccccccccccCHHHHHH
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMS-----DLELEQDSTSALNVTIRNWNAATK  162 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~-----~~~~~~~~~~~~~~~~~~~~~l~~  162 (535)
                      ..+|+|||+|++|+.+|+.+...+.+|+|||+.+.++... .....+..+.     +.......+.......++..    
T Consensus        92 ~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~~g~~~-~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~----  166 (497)
T 2bry_A           92 NTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFSRHN-VLHLWPFTIHDLRALGAKKFYGRFCTGTLDHISIR----  166 (497)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSSCCCCC-EEECCHHHHHHHHTTTHHHHCTTTTCTTCCEEEHH----
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccccCCCC-cccCChhHHHHHHHcCCccccccccccccccCCHH----
Confidence            3689999999999999999888899999999987653211 0000000000     00000000000000001111    


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCcEEEEeE-EEEec-------CCEEEE----ce--eEEEcceEEEeeCceecC-CCC
Q psy14461        163 LIKRFCIRAKNDSMRELKALGIDIVRTA-AAFTN-------PHTIKL----SN--RSVTGFNFLLAVERRCLP-EPR  224 (535)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~gV~~~~g~-~~~~~-------~~~v~~----~~--~~~~~d~lViATGs~p~~-~i~  224 (535)
                             .+...+.+.+++.||+++.++ +..+.       ...|++    ++  .++.+|+||+|||+.+.. ...
T Consensus       167 -------~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S~~r~~~  236 (497)
T 2bry_A          167 -------QLQLLLLKVALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKFVPEGFT  236 (497)
T ss_dssp             -------HHHHHHHHHHHHTTCEEEESCEEEEEECCCSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTTCCCTTCE
T ss_pred             -------HHHHHHHHHHHhCCCEEEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCCccccccc
Confidence                   222233355666799998875 33322       125665    22  368999999999998765 443

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=97.70  E-value=0.00022  Score=72.52  Aligned_cols=31  Identities=32%  Similarity=0.505  Sum_probs=29.6

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      .+|+|||||.+|+.+|..|++.|.+|+|+++
T Consensus         6 ~dVvIIGgGi~Gl~~A~~La~~G~~V~lle~   36 (382)
T 1y56_B            6 SEIVVIGGGIVGVTIAHELAKRGEEVTVIEK   36 (382)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeC
Confidence            4799999999999999999999999999997

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=97.70  E-value=0.00012  Score=77.13  Aligned_cols=98  Identities=9%  Similarity=-0.044  Sum_probs=67.4

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc--------------------------------------Cc-H
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH--------------------------------------FD-Q  281 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~--------------------------------------~~-~  281 (535)
                      .+|+|||||+.|+.+|..|++.|.+|+++++ +.+...                                      .+ +
T Consensus         7 ~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~   86 (474)
T 1zmd_A            7 ADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGTDFASRGIEMSEVRLNLD   86 (474)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHSSHHHHTTEEESCEEECHH
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCcCCcccccCccchHHHHHHHHHHHHhhhhhHhhCccccCCCccCHH
Confidence            4699999999999999999999999999999 543100                                      00 0


Q ss_pred             H-----------HHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCC
Q psy14461        282 E-----------MVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAA  346 (535)
Q Consensus       282 ~-----------~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~  346 (535)
                      .           +...+.+.+++.||++ .+..+ .++   .+.+.|.+   .+|...++.+|.+|+|+|.+|....
T Consensus        87 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~-~~~---~~~~~v~~---~~gg~~~~~~d~lViAtGs~p~~p~  156 (474)
T 1zmd_A           87 KMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGK-ITG---KNQVTATK---ADGGTQVIDTKNILIATGSEVTPFP  156 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEE-EEE---TTEEEEEC---TTSCEEEEEEEEEEECCCEEECCCT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEE-Eec---CCEEEEEe---cCCCcEEEEeCEEEECCCCCCCCCC
Confidence            1           1112345567789999 77643 332   34455554   2422237999999999999887643

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=97.70  E-value=0.00011  Score=75.00  Aligned_cols=36  Identities=19%  Similarity=0.118  Sum_probs=32.5

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLS  124 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~  124 (535)
                      ++|+|||+|++|+.+|+.+...+.+|+|+|+.+...
T Consensus        12 ~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~   47 (379)
T 3alj_A           12 RRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELR   47 (379)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSCC
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Confidence            578999999999999999888899999999987653

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=97.70  E-value=1.7e-05  Score=83.26  Aligned_cols=87  Identities=16%  Similarity=0.095  Sum_probs=67.4

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcC-------Cc--cCcHHHHHHHHHhhhcCCeEE-cceEEEEEEE
Q psy14461        240 WPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRL-------LK--HFDQEMVRILLSSLTKAGVSI-QCCVIEKVIS  308 (535)
Q Consensus       240 ~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~-------l~--~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~  308 (535)
                      ..++|+|||||+.|+.+|..|++.|.+|+++++ +.+       .|  .++.++.....+.+++.||++ .++.+.    
T Consensus       121 ~~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~----  196 (456)
T 2vdc_G          121 LGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGGLLVYGIPGFKLEKSVVERRVKLLADAGVIYHPNFEVG----  196 (456)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHHTTCEEETTCCBT----
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCcEEEeCCEec----
Confidence            357899999999999999999999999999998 654       23  235677777788888999999 887642    


Q ss_pred             eCCCcEEEEEecCCCCCceEEEcCEEEEccCCC
Q psy14461        309 SFDGMKGVRGFHPESKEPFADVFKTVVNAMEKK  341 (535)
Q Consensus       309 ~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~  341 (535)
                         .  .+++.   ++   .+++|.|++|+|..
T Consensus       197 ---~--~v~~~---~~---~~~~d~vvlAtG~~  218 (456)
T 2vdc_G          197 ---R--DASLP---EL---RRKHVAVLVATGVY  218 (456)
T ss_dssp             ---T--TBCHH---HH---HSSCSEEEECCCCC
T ss_pred             ---c--EEEhh---Hh---HhhCCEEEEecCCC
Confidence               1  12221   22   25699999999986

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=97.69  E-value=0.00011  Score=73.76  Aligned_cols=92  Identities=14%  Similarity=0.098  Sum_probs=65.6

Q ss_pred             cEEEECCChHHHHHHHHHHh---CCCcEEEEEc-CcCCc--------------------c---CcH---HHHHH------
Q psy14461        243 KTLVLGGSLMAVEIAATLNF---LGVPVTLVYS-RRLLK--------------------H---FDQ---EMVRI------  286 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~---~g~~Vtlv~~-~~~l~--------------------~---~~~---~~~~~------  286 (535)
                      +|+|||||.+|+-+|..|++   .|.+|+++++ +.+..                    .   .+.   .+...      
T Consensus         3 dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~~gg~~~~~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~   82 (342)
T 3qj4_A            3 QVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGGRMTTACSPHNPQCTADLGAQYITCTPHYAKKHQRFYDELLA   82 (342)
T ss_dssp             EEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSSSCGGGCEEECSSCTTCEEESSCCCEEECSSHHHHTHHHHHHHHH
T ss_pred             cEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCCCccceeeeecCCCCCceEecCCceEEcCchHHHHHHHHHHHHHh
Confidence            69999999999999999999   8999999987 43210                    0   000   11111      


Q ss_pred             --------------------------------HHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCE
Q psy14461        287 --------------------------------LLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKT  333 (535)
Q Consensus       287 --------------------------------~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~  333 (535)
                                                      ++...++.|+++ +++.|++|+.+ ++.+.|++.   +|+  ++.+|.
T Consensus        83 ~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~i~~~~~V~~i~~~-~~~~~v~~~---~g~--~~~ad~  156 (342)
T 3qj4_A           83 YGVLRPLSSPIEGMVMKEGDCNFVAPQGISSIIKHYLKESGAEVYFRHRVTQINLR-DDKWEVSKQ---TGS--PEQFDL  156 (342)
T ss_dssp             TTSCEECCSCEETCCC--CCEEEECTTCTTHHHHHHHHHHTCEEESSCCEEEEEEC-SSSEEEEES---SSC--CEEESE
T ss_pred             CCCeecCchhhcceeccCCccceecCCCHHHHHHHHHHhcCCEEEeCCEEEEEEEc-CCEEEEEEC---CCC--EEEcCE
Confidence                                            111222238999 99999999886 466777763   676  579999


Q ss_pred             EEEccCC
Q psy14461        334 VVNAMEK  340 (535)
Q Consensus       334 vi~a~G~  340 (535)
                      ||+|+..
T Consensus       157 vV~A~p~  163 (342)
T 3qj4_A          157 IVLTMPV  163 (342)
T ss_dssp             EEECSCH
T ss_pred             EEECCCH
Confidence            9999874

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=97.69  E-value=0.00016  Score=76.23  Aligned_cols=97  Identities=23%  Similarity=0.175  Sum_probs=67.4

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEcCcCC---------------------------------------c---cC
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLL---------------------------------------K---HF  279 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~l---------------------------------------~---~~  279 (535)
                      .+|+|||||+.|+.+|..|++.|.+|+++++..+.                                       +   .+
T Consensus        12 ~dVvVIGgG~aGl~aA~~l~~~g~~V~liE~~~~GG~~~n~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~   91 (479)
T 2hqm_A           12 YDYLVIGGGSGGVASARRAASYGAKTLLVEAKALGGTCVNVGCVPKKVMWYASDLATRVSHANEYGLYQNLPLDKEHLTF   91 (479)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTSCCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTBSTTSCCSGGGCCB
T ss_pred             CCEEEEcCCHHHHHHHHHHHHCCCcEEEEeCCCcCCcCcccCcHHHHHHHHHHHHHHHHHhHHhcCcccccccccccCcc
Confidence            47999999999999999999999999999983210                                       0   00


Q ss_pred             c------------HHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCC
Q psy14461        280 D------------QEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFA  345 (535)
Q Consensus       280 ~------------~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~  345 (535)
                      +            ..+...+.+.+++.||++ .+. +..++   .+.+.|..   .+|+..++.+|.+++|+|.+|...
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~i~---~~~~~v~~---~~g~~~~~~~d~lviAtGs~p~~p  163 (479)
T 2hqm_A           92 NWPEFKQKRDAYVHRLNGIYQKNLEKEKVDVVFGW-ARFNK---DGNVEVQK---RDNTTEVYSANHILVATGGKAIFP  163 (479)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEE-EEECT---TSCEEEEE---SSSCCEEEEEEEEEECCCEEECCC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeE-EEEee---CCEEEEEe---CCCcEEEEEeCEEEEcCCCCCCCC
Confidence            0            011122344566789999 664 54442   34455655   256545799999999999998765

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=97.67  E-value=0.00022  Score=72.62  Aligned_cols=52  Identities=10%  Similarity=0.017  Sum_probs=38.1

Q ss_pred             HHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCC
Q psy14461        285 RILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFD  343 (535)
Q Consensus       285 ~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~  343 (535)
                      ..+.+.+++.|+++ .+++|++++.+ ++.+.|++   .+|   ++.+|.||+|+|...+
T Consensus       154 ~~l~~~~~~~Gv~i~~~~~v~~i~~~-~~~~~v~~---~~g---~~~a~~vV~A~G~~~~  206 (389)
T 2gf3_A          154 RAYRELAEARGAKVLTHTRVEDFDIS-PDSVKIET---ANG---SYTADKLIVSMGAWNS  206 (389)
T ss_dssp             HHHHHHHHHTTCEEECSCCEEEEEEC-SSCEEEEE---TTE---EEEEEEEEECCGGGHH
T ss_pred             HHHHHHHHHCCCEEEcCcEEEEEEec-CCeEEEEe---CCC---EEEeCEEEEecCccHH
Confidence            34445566779999 99999999876 34566654   234   6999999999997643

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=97.67  E-value=0.00017  Score=73.05  Aligned_cols=51  Identities=10%  Similarity=0.089  Sum_probs=37.9

Q ss_pred             HHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCC
Q psy14461        285 RILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKF  342 (535)
Q Consensus       285 ~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p  342 (535)
                      ..+.+.+++.|+++ .+++|++++.+ ++.+.|+.   .+|   ++.+|.||+|+|...
T Consensus       153 ~~l~~~~~~~G~~i~~~~~V~~i~~~-~~~~~v~~---~~g---~~~a~~vV~a~G~~s  204 (372)
T 2uzz_A          153 KTWIQLAKEAGCAQLFNCPVTAIRHD-DDGVTIET---ADG---EYQAKKAIVCAGTWV  204 (372)
T ss_dssp             HHHHHHHHHTTCEEECSCCEEEEEEC-SSSEEEEE---SSC---EEEEEEEEECCGGGG
T ss_pred             HHHHHHHHHCCCEEEcCCEEEEEEEc-CCEEEEEE---CCC---eEEcCEEEEcCCccH
Confidence            34445566789999 99999999876 34566655   245   489999999999653

>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}

Probab=97.67  E-value=5.2e-05  Score=63.55  Aligned_cols=64  Identities=14%  Similarity=0.180  Sum_probs=50.0

Q ss_pred             ChhHHHHhhhcCCcEEEEeCC-----CchhhHHHHHHHHHhcCC-cceEEEEEeeCCccHHHHHHHHHhhCCCeE
Q psy14461         46 TPPAYISRLSYENRILIFTHA-----VLREENARAERYLNARGD-RFAVLYLDRIGDEGILLEEELKRQTNQRRD  114 (535)
Q Consensus        46 ~l~~~~~~~i~~~~v~v~~k~-----~cp~~~~~~k~~~~~~~~-~~~~~~v~iiG~G~aG~~~al~~~~~~~~V  114 (535)
                      ..+..++.+|++|+|++|+|.     +|| ||.+++.++...+. ++..+  ++ -.++. +..++...++..+|
T Consensus         8 ~~~e~i~~~i~~~~VvvF~Kgt~~~P~C~-fc~~ak~lL~~~gv~~~~~~--~v-~~~~~-~r~~l~~~sg~~Tv   77 (118)
T 2wul_A            8 GSAEQLDALVKKDKVVVFLKGTPEQPQCG-FSNAVVQILRLHGVRDYAAY--NV-LDDPE-LRQGIKDYSNWPTI   77 (118)
T ss_dssp             -CHHHHHHHHHHSSEEEEESBCSSSBSSH-HHHHHHHHHHHTTCCSCEEE--ET-TSCHH-HHHHHHHHHTCCSS
T ss_pred             chHHHHHHHHhcCCEEEEEcCCCCCCCCH-HHHHHHHHHHHhCCcCeEee--cc-cCCHH-HHHHHHHhccCCCC
Confidence            456788999999999999985     799 99999999999986 45433  33 34465 89999888776655

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=97.65  E-value=3.7e-05  Score=81.60  Aligned_cols=95  Identities=17%  Similarity=0.192  Sum_probs=66.4

Q ss_pred             CcEEEECCChHHHHHHHHHHhC--CCcEEEEEc-CcCC---ccCcH------H--HHHHH----------------HH--
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFL--GVPVTLVYS-RRLL---KHFDQ------E--MVRIL----------------LS--  289 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~--g~~Vtlv~~-~~~l---~~~~~------~--~~~~~----------------~~--  289 (535)
                      .+|+|||||+.|+.+|..|++.  |.+|+++++ +.+.   +.+..      .  .....                .+  
T Consensus        12 ~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~~y~r~~lsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (493)
T 1m6i_A           12 VPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPSFY   91 (493)
T ss_dssp             EEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSCGGGS
T ss_pred             CCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCCCCCCCHHhhcCCccchhhcccccccccccccccccchHhh
Confidence            4799999999999999999887  889999998 5431   10000      0  00000                00  


Q ss_pred             ----h---hhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCC
Q psy14461        290 ----S---LTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDF  344 (535)
Q Consensus       290 ----~---l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~  344 (535)
                          .   +.+.||++ .++.+.+++.. .  .+|++   .+|+  ++.+|.+++|||.+|..
T Consensus        92 ~~~~~l~~~~~~gv~~~~g~~v~~id~~-~--~~V~~---~~g~--~i~yd~lviATGs~p~~  146 (493)
T 1m6i_A           92 VSAQDLPHIENGGVAVLTGKKVVQLDVR-D--NMVKL---NDGS--QITYEKCLIATGGTPRS  146 (493)
T ss_dssp             BCTTTTTTSTTCEEEEEETCCEEEEEGG-G--TEEEE---TTSC--EEEEEEEEECCCEEECC
T ss_pred             cchhhhhhhhcCCeEEEcCCEEEEEECC-C--CEEEE---CCCC--EEECCEEEECCCCCCCC
Confidence                0   12468999 99999999864 2  25666   3676  79999999999998864

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=97.65  E-value=8.9e-05  Score=77.91  Aligned_cols=96  Identities=15%  Similarity=0.044  Sum_probs=67.1

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEcCcCC---------cc---------------------------Cc-H----
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLL---------KH---------------------------FD-Q----  281 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~l---------~~---------------------------~~-~----  281 (535)
                      +|+|||||+.|+.+|..|++.|.+|+++++..+.         |.                           .+ +    
T Consensus         5 dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~gG~~~~~g~~psk~ll~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~   84 (464)
T 2a8x_A            5 DVVVLGAGPGGYVAAIRAAQLGLSTAIVEPKYWGGVCLNVGCIPSKALLRNAELVHIFTKDAKAFGISGEVTFDYGIAYD   84 (464)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHTTTTTEEECCEECHHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCcccccCchhhHHHHHHHHHHHHHHHHHHhcCCCCCCccCHHHHHH
Confidence            6999999999999999999999999999983211         00                           00 0    


Q ss_pred             -------HHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCC
Q psy14461        282 -------EMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFA  345 (535)
Q Consensus       282 -------~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~  345 (535)
                             .+...+.+.+++.||++ .++.+. +  + .+.+.|.+   .+|+..++.+|.+++|+|.+|...
T Consensus        85 ~~~~~~~~l~~~l~~~~~~~gv~~~~g~~~~-i--d-~~~v~V~~---~~G~~~~~~~d~lViAtG~~~~~~  149 (464)
T 2a8x_A           85 RSRKVAEGRVAGVHFLMKKNKITEIHGYGTF-A--D-ANTLLVDL---NDGGTESVTFDNAIIATGSSTRLV  149 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEEECEEEEE-S--S-SSEEEEEE---TTSCCEEEEEEEEEECCCEEECCC
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCEEEEeEEEE-e--c-CCeEEEEe---CCCceEEEEcCEEEECCCCCCCCC
Confidence                   01122345567789999 776543 2  2 34556665   356334899999999999988654

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=97.63  E-value=0.00017  Score=73.91  Aligned_cols=31  Identities=19%  Similarity=0.234  Sum_probs=29.4

Q ss_pred             CcEEEECCChHHHHHHHHHHh-CC-CcEEEEEc
Q psy14461        242 GKTLVLGGSLMAVEIAATLNF-LG-VPVTLVYS  272 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~-~g-~~Vtlv~~  272 (535)
                      .+|+|||||.+|+.+|..|++ .| .+|+|+++
T Consensus        22 ~dVvIIG~G~~Gl~~A~~La~~~G~~~V~vlE~   54 (405)
T 2gag_B           22 YDAIIVGGGGHGLATAYFLAKNHGITNVAVLEK   54 (405)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHCCCCEEEECS
T ss_pred             CCEEEECcCHHHHHHHHHHHHhcCCCcEEEEeC
Confidence            479999999999999999999 99 99999987

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=97.62  E-value=0.00013  Score=77.04  Aligned_cols=100  Identities=18%  Similarity=0.051  Sum_probs=67.0

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCc------------------------------------cCc-HH-
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLK------------------------------------HFD-QE-  282 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~------------------------------------~~~-~~-  282 (535)
                      .+|+|||||+.|+.+|..|++.|.+|+++++ +.+..                                    ..+ .. 
T Consensus         7 ~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~psk~ll~~~~~~~~~~~~~~~gi~~~~~~~~~~~~   86 (482)
T 1ojt_A            7 YDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVRHLAANGIKYPEPELDIDML   86 (482)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCCHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCceeeecccchHHHHHHHHHHHHHHHHHhCCcccCCCccCHHHH
Confidence            3699999999999999999999999999998 65310                                    001 01 


Q ss_pred             ----------HHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecC-------CCCCceEEEcCEEEEccCCCCCC
Q psy14461        283 ----------MVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHP-------ESKEPFADVFKTVVNAMEKKFDF  344 (535)
Q Consensus       283 ----------~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~-------~~G~~~~~~~D~vi~a~G~~p~~  344 (535)
                                +...+.+.+++.||++ .+..+. +  + ++.+.|...+.       .+|+..++.+|.+|+|+|..|..
T Consensus        87 ~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~-~--~-~~~v~v~~~~g~~~~~~~~~g~~~~i~ad~lViAtGs~p~~  162 (482)
T 1ojt_A           87 RAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQF-L--D-PHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRVTK  162 (482)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEE-E--E-TTEEEEEEEEEEETTEEEEEEEEEEEEEEEEEECCCEEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCcEEEeeEEEE-c--c-CCEEEEEecCCcccccccccCcceEEEcCEEEECCCCCCCC
Confidence                      1112334566789999 776543 2  2 34455554310       01222479999999999999875


Q ss_pred             C
Q psy14461        345 A  345 (535)
Q Consensus       345 ~  345 (535)
                      .
T Consensus       163 ~  163 (482)
T 1ojt_A          163 L  163 (482)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=97.62  E-value=0.00033  Score=77.22  Aligned_cols=50  Identities=14%  Similarity=0.104  Sum_probs=38.5

Q ss_pred             HHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCC
Q psy14461        287 LLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKF  342 (535)
Q Consensus       287 ~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p  342 (535)
                      +.+.+++.|+++ .+++|+++..+ ++.+.|++   .+|.  ++.+|.||+|+|...
T Consensus       423 L~~~a~~~Gv~i~~~t~V~~l~~~-~~~v~V~t---~~G~--~i~Ad~VVlAtG~~s  473 (676)
T 3ps9_A          423 VLELAQQQGLQIYYQYQLQNFSRK-DDCWLLNF---AGDQ--QATHSVVVLANGHQI  473 (676)
T ss_dssp             HHHHHHHTTCEEEESCCEEEEEEE-TTEEEEEE---TTSC--EEEESEEEECCGGGG
T ss_pred             HHHHHHhCCCEEEeCCeeeEEEEe-CCeEEEEE---CCCC--EEECCEEEECCCcch
Confidence            334445679999 99999999877 46666665   3566  699999999999763

>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*

Probab=97.61  E-value=7.7e-05  Score=62.14  Aligned_cols=67  Identities=21%  Similarity=0.249  Sum_probs=51.3

Q ss_pred             ChhHHHHhhhcCCcEEEEeCCCchhhHHHHHHHHHhcCCcceEEEEEeeC-CccHHHHHHHHHhhCCCeE
Q psy14461         46 TPPAYISRLSYENRILIFTHAVLREENARAERYLNARGDRFAVLYLDRIG-DEGILLEEELKRQTNQRRD  114 (535)
Q Consensus        46 ~l~~~~~~~i~~~~v~v~~k~~cp~~~~~~k~~~~~~~~~~~~~~v~iiG-~G~aG~~~al~~~~~~~~V  114 (535)
                      ....++..++..++|++|++++|| +|.+++.++.+.+.++..++++... .++. +...+....+..+|
T Consensus         7 ~~~~~~~~~i~~~~v~vy~~~~Cp-~C~~~~~~L~~~~i~~~~~di~~~~~~~~~-~~~~l~~~~g~~tv   74 (113)
T 3rhb_A            7 RMEESIRKTVTENTVVIYSKTWCS-YCTEVKTLFKRLGVQPLVVELDQLGPQGPQ-LQKVLERLTGQHTV   74 (113)
T ss_dssp             HHHHHHHHHHHHSSEEEEECTTCH-HHHHHHHHHHHTTCCCEEEEGGGSTTHHHH-HHHHHHHHHSCCSS
T ss_pred             HHHHHHHHHHhcCCEEEEECCCCh-hHHHHHHHHHHcCCCCeEEEeecCCCChHH-HHHHHHHHhCCCCc
Confidence            456788888999999999999999 9999999999999988777766543 2233 56666665554443

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=97.61  E-value=0.00013  Score=77.88  Aligned_cols=99  Identities=10%  Similarity=0.011  Sum_probs=66.7

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-Cc--------CCc-----------------------------------
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RR--------LLK-----------------------------------  277 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~--------~l~-----------------------------------  277 (535)
                      -+|+|||+|+.|+.+|..|++.|.+|+++++ +.        +-.                                   
T Consensus        33 ~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~GciPsk~l~~~~~~~~~~~~~~~~g~~~~~  112 (519)
T 3qfa_A           33 YDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWKVEE  112 (519)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTBCCCS
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccccCCCcccccCCcCccchHHHHHHHHHHHHHHHHHhcCcccCC
Confidence            4799999999999999999999999999997 31        100                                   


Q ss_pred             --cCc-H-----------HHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCC
Q psy14461        278 --HFD-Q-----------EMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKF  342 (535)
Q Consensus       278 --~~~-~-----------~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p  342 (535)
                        ..+ +           .+...+...++..+|++ .+. ...+.   ...+.|..   .+|+.+++.+|.+|+|||.+|
T Consensus       113 ~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~gV~~i~g~-a~~~d---~~~v~v~~---~~g~~~~i~~d~lViATGs~p  185 (519)
T 3qfa_A          113 TVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAY-GQFIG---PHRIKATN---NKGKEKIYSAERFLIATGERP  185 (519)
T ss_dssp             SCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSE-EEEEE---TTEEEEEC---TTCCCCEEEEEEEEECCCEEE
T ss_pred             cCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEee---CCEEEEEc---CCCCEEEEECCEEEEECCCCc
Confidence              000 0           11112233456778998 554 44443   34445543   356556899999999999998


Q ss_pred             CCCCC
Q psy14461        343 DFAAL  347 (535)
Q Consensus       343 ~~~~l  347 (535)
                      ....+
T Consensus       186 ~~p~i  190 (519)
T 3qfa_A          186 RYLGI  190 (519)
T ss_dssp             CCCCC
T ss_pred             CCCCC
Confidence            76543

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=97.60  E-value=8.7e-05  Score=78.27  Aligned_cols=95  Identities=13%  Similarity=0.032  Sum_probs=66.0

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc--------------------------------------Cc-H
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH--------------------------------------FD-Q  281 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~--------------------------------------~~-~  281 (535)
                      .+|+|||||+.|+.+|..|++.|.+|+++++ +.+...                                      ++ +
T Consensus         6 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~   85 (478)
T 1v59_A            6 HDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVNGDIKINVA   85 (478)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGGGTEEECSCEEECHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCcCCccceeccHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCccCHH
Confidence            4699999999999999999999999999998 543100                                      00 0


Q ss_pred             H-----------HHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceE------EEcCEEEEccCCCCC
Q psy14461        282 E-----------MVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFA------DVFKTVVNAMEKKFD  343 (535)
Q Consensus       282 ~-----------~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~------~~~D~vi~a~G~~p~  343 (535)
                      +           +...+.+.+++.||++ .++.+..   + .+.+.|.+   .+|+..+      +.+|.+|+|+|.+|.
T Consensus        86 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~---~-~~~v~V~~---~~G~~~~~~~~~~i~~d~lViAtGs~p~  158 (478)
T 1v59_A           86 NFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSFE---D-ETKIRVTP---VDGLEGTVKEDHILDVKNIIVATGSEVT  158 (478)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEES---S-SSEEEEEC---CTTCTTCCSSCEEEEEEEEEECCCEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEc---c-CCeEEEEe---cCCCcccccccceEEeCEEEECcCCCCC
Confidence            0           1112334566789999 8876542   2 34455554   2552225      999999999999884

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=97.60  E-value=0.00041  Score=73.61  Aligned_cols=56  Identities=11%  Similarity=0.044  Sum_probs=41.0

Q ss_pred             HHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCC
Q psy14461        286 ILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKF  342 (535)
Q Consensus       286 ~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p  342 (535)
                      .+.+.+++.|+++ .+++|+++..+ ++...|++.+..+|++.++.+|.||.|+|.-.
T Consensus       154 ~l~~~a~~~Gv~i~~~~~V~~l~~~-~~~~~V~~~d~~~G~~~~i~A~~VV~AtG~~s  210 (501)
T 2qcu_A          154 ANAQMVVRKGGEVLTRTRATSARRE-NGLWIVEAEDIDTGKKYSWQARGLVNATGPWV  210 (501)
T ss_dssp             HHHHHHHHTTCEEECSEEEEEEEEE-TTEEEEEEEETTTCCEEEEEESCEEECCGGGH
T ss_pred             HHHHHHHHcCCEEEcCcEEEEEEEe-CCEEEEEEEECCCCCEEEEECCEEEECCChhH
Confidence            3445556789999 99999999876 34456666532357655799999999999653

>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A

Probab=97.58  E-value=0.00011  Score=60.81  Aligned_cols=64  Identities=13%  Similarity=0.166  Sum_probs=49.7

Q ss_pred             ChhHHHHhhhcCCcEEEEeCC-----CchhhHHHHHHHHHhcCCcceEEEEEeeCCccHHHHHHHHHhhCCCeE
Q psy14461         46 TPPAYISRLSYENRILIFTHA-----VLREENARAERYLNARGDRFAVLYLDRIGDEGILLEEELKRQTNQRRD  114 (535)
Q Consensus        46 ~l~~~~~~~i~~~~v~v~~k~-----~cp~~~~~~k~~~~~~~~~~~~~~v~iiG~G~aG~~~al~~~~~~~~V  114 (535)
                      ++..++..++++++|++|+++     +|| +|.++++++.+.+.++..++|.   ..+. +..++....+..+|
T Consensus         6 ~~~~~v~~~i~~~~Vvvy~k~t~~~p~Cp-~C~~ak~~L~~~gi~~~~~dI~---~~~~-~~~~l~~~~g~~tv   74 (109)
T 3ipz_A            6 QLKDTLEKLVNSEKVVLFMKGTRDFPMCG-FSNTVVQILKNLNVPFEDVNIL---ENEM-LRQGLKEYSNWPTF   74 (109)
T ss_dssp             HHHHHHHHHHTSSSEEEEESBCSSSBSSH-HHHHHHHHHHHTTCCCEEEEGG---GCHH-HHHHHHHHHTCSSS
T ss_pred             HHHHHHHHHHccCCEEEEEecCCCCCCCh-hHHHHHHHHHHcCCCcEEEECC---CCHH-HHHHHHHHHCCCCC
Confidence            457788999999999999997     899 9999999999999887665543   2344 66777666554433

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=97.58  E-value=0.00038  Score=74.05  Aligned_cols=58  Identities=17%  Similarity=0.142  Sum_probs=41.7

Q ss_pred             HHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcE-EEEEecCCCCCceEEEcC-EEEEccCCCC
Q psy14461        283 MVRILLSSLTKAGVSI-QCCVIEKVISSFDGMK-GVRGFHPESKEPFADVFK-TVVNAMEKKF  342 (535)
Q Consensus       283 ~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~-~v~~~~~~~G~~~~~~~D-~vi~a~G~~p  342 (535)
                      +...+.+.+++.||++ +++.++++..++++++ .|.+..  +|+..++.+| .||+|+|--.
T Consensus       204 l~~~L~~~~~~~Gv~i~~~t~v~~L~~~~~g~v~GV~~~~--~g~~~~i~A~k~VVlAtGG~~  264 (510)
T 4at0_A          204 LMKPLVETAEKLGVRAEYDMRVQTLVTDDTGRVVGIVAKQ--YGKEVAVRARRGVVLATGSFA  264 (510)
T ss_dssp             HHHHHHHHHHHTTCEEECSEEEEEEEECTTCCEEEEEEEE--TTEEEEEEEEEEEEECCCCCT
T ss_pred             HHHHHHHHHHHcCCEEEecCEeEEEEECCCCcEEEEEEEE--CCcEEEEEeCCeEEEeCCChh
Confidence            3344455566789999 9999999987633554 366553  5665679997 9999998654

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=97.58  E-value=0.00032  Score=75.94  Aligned_cols=101  Identities=16%  Similarity=0.159  Sum_probs=73.8

Q ss_pred             CcEEEECCChHHHHHHHHHHhC------CCcEEEEEc-CcCCcc------------------------------------
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFL------GVPVTLVYS-RRLLKH------------------------------------  278 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~------g~~Vtlv~~-~~~l~~------------------------------------  278 (535)
                      -+|+|||||+.|+-+|..|++.      |.+|+|+++ +.+...                                    
T Consensus        36 ~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~l~~~~l~~ll~~~~~~g~~~~~~~~~~~~~  115 (584)
T 2gmh_A           36 ADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFPDWKEKGAPLNTPVTEDRFG  115 (584)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHHHHCTTHHHHTCCCCEECCEEEEE
T ss_pred             CCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCCCccccccccCHHHHHHHHHHHHhcCCceeeeechhhee
Confidence            4799999999999999999998      999999997 432100                                    


Q ss_pred             ---------C---c--------------HHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEE-EEEec---CCCCCc-
Q psy14461        279 ---------F---D--------------QEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKG-VRGFH---PESKEP-  326 (535)
Q Consensus       279 ---------~---~--------------~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~-v~~~~---~~~G~~-  326 (535)
                               +   +              ..+.+.+.+.+++.||++ .++.++++..++++.+. |.+.+   ..+|+. 
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~l~~~~~g~V~gV~~~~~g~~~~G~~~  195 (584)
T 2gmh_A          116 ILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPK  195 (584)
T ss_dssp             EECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEE
T ss_pred             eeccCCCccccccCccccccCCCEEEeHHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCCCEEEEEeCCccccCCCCcc
Confidence                     0   0              134556667777789999 99999999876445554 66531   013421 


Q ss_pred             ------eEEEcCEEEEccCCCC
Q psy14461        327 ------FADVFKTVVNAMEKKF  342 (535)
Q Consensus       327 ------~~~~~D~vi~a~G~~p  342 (535)
                            .++.+|.||.|.|...
T Consensus       196 ~~~~~g~~i~Ad~VV~AdG~~S  217 (584)
T 2gmh_A          196 TTFERGLELHAKVTIFAEGCHG  217 (584)
T ss_dssp             EEEECCCEEECSEEEECCCTTC
T ss_pred             cccCCceEEECCEEEEeeCCCc
Confidence                  3799999999999764

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=97.56  E-value=0.00022  Score=76.15  Aligned_cols=94  Identities=14%  Similarity=0.080  Sum_probs=68.0

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCc---------------------------------cC------cH
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLK---------------------------------HF------DQ  281 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~---------------------------------~~------~~  281 (535)
                      .+|+|||||+.|+.+|..|++.|.+|+++++ +.+..                                 .+      ..
T Consensus        44 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  123 (523)
T 1mo9_A           44 YDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMTEKVVGIK  123 (523)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTSTTCCCCTTCCCCHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCcccccCcCchHHHHHHHHHHHHHhhhhhcCcHHHHHhhhhhHH
Confidence            5799999999999999999999999999999 63211                                 00      12


Q ss_pred             HHHHHHH-------Hhh-----hcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCC
Q psy14461        282 EMVRILL-------SSL-----TKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAA  346 (535)
Q Consensus       282 ~~~~~~~-------~~l-----~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~  346 (535)
                      ++...+.       +.+     ++.||++ ...+++.++.   .  .|.+    +|+  ++.+|.+++|+|.+|....
T Consensus       124 ~~~~~l~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~---~--~v~~----~g~--~~~~d~lViATGs~p~~p~  190 (523)
T 1mo9_A          124 EVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDN---H--TVEA----AGK--VFKAKNLILAVGAGPGTLD  190 (523)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEET---T--EEEE----TTE--EEEBSCEEECCCEECCCCC
T ss_pred             HHHHHHHhhhhhhhhhhhhcccccCCcEEEEeeEEEEeeC---C--EEEE----CCE--EEEeCEEEECCCCCCCCCC
Confidence            2222222       445     6778998 6888877752   2  3555    354  7999999999999887654

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=97.55  E-value=8.2e-05  Score=76.13  Aligned_cols=96  Identities=9%  Similarity=0.068  Sum_probs=68.3

Q ss_pred             CcEEEECCChHHHHHHHHHHhCC--CcEEEEEc-CcCCc---cC---------cHHHHH-HHHHhhhcCCeEE-cceEEE
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLG--VPVTLVYS-RRLLK---HF---------DQEMVR-ILLSSLTKAGVSI-QCCVIE  304 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g--~~Vtlv~~-~~~l~---~~---------~~~~~~-~~~~~l~~~gV~i-~~~~v~  304 (535)
                      .+|+|||||+.|+.+|..|++.|  .+|+++++ +...+   .+         ..++.. .+.+.+++.|+++ .+.+++
T Consensus         5 ~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~   84 (384)
T 2v3a_A            5 APLVIIGTGLAGYNLAREWRKLDGETPLLMITADDGRSYSKPMLSTGFSKNKDADGLAMAEPGAMAEQLNARILTHTRVT   84 (384)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSCCCEECGGGGGGTTTTTCCHHHHEEECHHHHHHHTTCEEECSCCCC
T ss_pred             CcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCCCCccCcccccHHHhCCCCHHHhhccCHHHHHHhCCcEEEeCCEEE
Confidence            57999999999999999999998  56899987 42111   00         112211 2344456789999 898898


Q ss_pred             EEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCC
Q psy14461        305 KVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAA  346 (535)
Q Consensus       305 ~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~  346 (535)
                      .++.. +  ..|++    ++.  ++.+|.+++|+|.+|....
T Consensus        85 ~i~~~-~--~~v~~----~~~--~~~~d~lviAtG~~p~~p~  117 (384)
T 2v3a_A           85 GIDPG-H--QRIWI----GEE--EVRYRDLVLAWGAEPIRVP  117 (384)
T ss_dssp             EEEGG-G--TEEEE----TTE--EEECSEEEECCCEEECCCC
T ss_pred             EEECC-C--CEEEE----CCc--EEECCEEEEeCCCCcCCCC
Confidence            88753 1  24555    333  6999999999999987643

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=97.54  E-value=0.00054  Score=70.08  Aligned_cols=30  Identities=20%  Similarity=0.255  Sum_probs=29.1

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      +|+|||||.+|+-+|..|+++|.+|+|+++
T Consensus         6 DVvIIGaG~~Gl~~A~~La~~G~~V~vlE~   35 (397)
T 2oln_A            6 DVVVVGGGPVGLATAWQVAERGHRVLVLER   35 (397)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEES
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeC
Confidence            699999999999999999999999999998

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=97.54  E-value=0.00047  Score=74.04  Aligned_cols=96  Identities=14%  Similarity=0.122  Sum_probs=69.5

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc-----Cc-----------------------------------
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH-----FD-----------------------------------  280 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~-----~~-----------------------------------  280 (535)
                      .+|+|||||++|+-+|..|++.|.+|+|+++ +.+...     +.                                   
T Consensus        27 ~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~~  106 (549)
T 2r0c_A           27 TDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITHPRVGTIGPRSMELFRRWGVAKQIRTAGWPGDHPLDAAWVTRV  106 (549)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSCCSSCCCCEECHHHHHHHHHTTCHHHHHTSSCCTTSBCCEEEESSB
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCChHHHHhhcCCcccccceEEeccC
Confidence            3699999999999999999999999999987 432100     00                                   


Q ss_pred             -------------------------------HHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceE
Q psy14461        281 -------------------------------QEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFA  328 (535)
Q Consensus       281 -------------------------------~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~  328 (535)
                                                     ..+.+.+.+.+++.   + .++++++++.+ ++.+++++.+..+|++.+
T Consensus       107 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~---v~~~~~v~~~~~~-~~~v~v~~~~~~~G~~~~  182 (549)
T 2r0c_A          107 GGHEVYRIPLGTADTRATPEHTPEPDAICPQHWLAPLLAEAVGER---LRTRSRLDSFEQR-DDHVRATITDLRTGATRA  182 (549)
T ss_dssp             TSCEEEEECCCBTTTSCCCSSCSSCCEECCHHHHHHHHHHHHGGG---EECSEEEEEEEEC-SSCEEEEEEETTTCCEEE
T ss_pred             CCceeEeecccccccccccCCCCCcccccCHHHHHHHHHHHHHHh---cccCcEEEEEEEe-CCEEEEEEEECCCCCEEE
Confidence                                           12333444444444   7 89999999876 456777776433475558


Q ss_pred             EEcCEEEEccCCC
Q psy14461        329 DVFKTVVNAMEKK  341 (535)
Q Consensus       329 ~~~D~vi~a~G~~  341 (535)
                      +.+|.||.|.|..
T Consensus       183 i~a~~vVgADG~~  195 (549)
T 2r0c_A          183 VHARYLVACDGAS  195 (549)
T ss_dssp             EEEEEEEECCCTT
T ss_pred             EEeCEEEECCCCC
Confidence            9999999999964

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=97.53  E-value=0.00021  Score=76.50  Aligned_cols=43  Identities=14%  Similarity=0.153  Sum_probs=38.2

Q ss_pred             eEcCCCCCc-CCCCEEEeCCcCCCCCCcHHHHHHHHHHHHHHHhC
Q psy14461        362 VVCNEKDQT-SVGNIFAVGGIVHGKPNNASMAAISARLIIERLYG  405 (535)
Q Consensus       362 i~vd~~~~T-~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g  405 (535)
                      |..|+.++| +++|+|+|||.+ |-..-+..|..+|..+|+.|+.
T Consensus       497 i~~~~~~~~~~~~gly~~Gega-G~a~gi~~Aa~~G~~~a~~i~~  540 (549)
T 3nlc_A          497 IKRGKDFQSVNLKGFYPAGEGA-GYAGGILSAGIDGIKVAEAVAR  540 (549)
T ss_dssp             CCCTTTTSCTTCBTEEECHHHH-TSCCSHHHHHHHHHHHHHHHHH
T ss_pred             EEECCCceECCcCCEEEccccC-ChhhHHHHHHHHHHHHHHHHHH
Confidence            678899998 899999999999 8777888899999999998864

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=97.51  E-value=0.00038  Score=72.76  Aligned_cols=35  Identities=17%  Similarity=0.116  Sum_probs=31.7

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHL  123 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~  123 (535)
                      ++|+|||+|++|+.+|+.+...+.+|+|+|+.+.+
T Consensus        27 ~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~~~   61 (447)
T 2i0z_A           27 YDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKL   61 (447)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence            57899999999999999988888999999998754

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=97.50  E-value=0.00023  Score=75.47  Aligned_cols=100  Identities=14%  Similarity=0.052  Sum_probs=67.8

Q ss_pred             CcEEEECCChHHHHHHHHHHhC---CCcEEEEEc-CcCCc-----------------------------c---------C
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFL---GVPVTLVYS-RRLLK-----------------------------H---------F  279 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~---g~~Vtlv~~-~~~l~-----------------------------~---------~  279 (535)
                      .+|+|||||+.|+.+|..|+++   |.+|+++++ + +..                             .         .
T Consensus         3 ~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~-~GG~~~~~g~~psk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~   81 (499)
T 1xdi_A            3 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG-IGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFHIDFDDAKI   81 (499)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTBC------CB
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC-cCCcccCcCccchHHHHHHHHHHHHHHHHHhCCCccccCCCcc
Confidence            3699999999999999999999   999999998 5 200                             0         0


Q ss_pred             c-HH-----------HHHHHHHhhhcCCeEE-cceEEEEEEEe---CCCcEEEEEecCCCCCceEEEcCEEEEccCCCCC
Q psy14461        280 D-QE-----------MVRILLSSLTKAGVSI-QCCVIEKVISS---FDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFD  343 (535)
Q Consensus       280 ~-~~-----------~~~~~~~~l~~~gV~i-~~~~v~~i~~~---~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~  343 (535)
                      + +.           +...+.+.+++.||++ .+. +..++..   +++.+.|..   .+|++.++.+|.+++|+|.+|.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~i~~~~~~~~~~~~V~~---~~g~~~~~~~d~lviATGs~p~  157 (499)
T 1xdi_A           82 SLPQIHARVKTLAAAQSADITAQLLSMGVQVIAGR-GELIDSTPGLARHRIKATA---ADGSTSEHEADVVLVATGASPR  157 (499)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESE-EEECCSSSCCSSEEEEEEC---TTSCEEEEEESEEEECCCEEEC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeE-EEEecCcccCCCCEEEEEe---CCCcEEEEEeCEEEEcCCCCCC
Confidence            1 11           1222456667889999 775 5555431   012334443   2454347999999999999887


Q ss_pred             CCC
Q psy14461        344 FAA  346 (535)
Q Consensus       344 ~~~  346 (535)
                      ...
T Consensus       158 ~p~  160 (499)
T 1xdi_A          158 ILP  160 (499)
T ss_dssp             CCG
T ss_pred             CCC
Confidence            543

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=97.50  E-value=0.00017  Score=76.11  Aligned_cols=94  Identities=20%  Similarity=0.150  Sum_probs=65.3

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEcCcCC------------------------------------ccCc-----
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLL------------------------------------KHFD-----  280 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~l------------------------------------~~~~-----  280 (535)
                      .+|+|||||+.|+.+|..|++.|.+|++++++.+.                                    +.++     
T Consensus        21 ~dVvIIGgG~aGl~aA~~la~~G~~V~liE~~~~GG~~~~~gc~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  100 (478)
T 3dk9_A           21 YDYLVIGGGSGGLASARRAAELGARAAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFNWRVIK  100 (478)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTSCCCCCCCCHHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCccchHHHHHHHHHHHHHHHHHhcCccCCCCccCHHHHH
Confidence            57999999999999999999999999999983210                                    0001     


Q ss_pred             -------HHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCC
Q psy14461        281 -------QEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFA  345 (535)
Q Consensus       281 -------~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~  345 (535)
                             ..+...+...+++.||++ .+. +..+.   .....|..    +|+  ++.+|.+++|+|.+|...
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~~~---~~~~~v~~----~g~--~~~~d~lviAtG~~p~~p  163 (478)
T 3dk9_A          101 EKRDAYVSRLNAIYQNNLTKSHIEIIRGH-AAFTS---DPKPTIEV----SGK--KYTAPHILIATGGMPSTP  163 (478)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCEEEESC-EEECS---CSSCEEEE----TTE--EEECSCEEECCCEEECCC
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEee---CCeEEEEE----CCE--EEEeeEEEEccCCCCCCC
Confidence                   112233445567789998 664 33222   22344553    565  799999999999988765

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=97.47  E-value=0.0003  Score=73.91  Aligned_cols=93  Identities=14%  Similarity=0.090  Sum_probs=64.2

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEcCcCCc------------------------------------cCc-H---
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLK------------------------------------HFD-Q---  281 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~l~------------------------------------~~~-~---  281 (535)
                      .+|+|||||+.|+.+|..|++.|.+|+++++..+..                                    ..+ +   
T Consensus         5 ~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~   84 (463)
T 2r9z_A            5 FDLIAIGGGSGGLAVAEKAAAFGKRVALIESKALGGTCVNVGCVPKKVMWYASHLAEAVRDAPGFGVQASGGTLDWPRLV   84 (463)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTBCCC---CCHHHHH
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEcCCCCCCcCcCcCchhHHHHHHHHHHHHHHhhhhhcCcccCCCCcCHHHHH
Confidence            479999999999999999999999999999832100                                    000 0   


Q ss_pred             --------HHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCC
Q psy14461        282 --------EMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAA  346 (535)
Q Consensus       282 --------~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~  346 (535)
                              .+...+.+.+++.||++ .+. +..++   ..  .|++    +|+  ++.+|.+++|+|.+|....
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~i~---~~--~v~~----~g~--~~~~d~lviAtGs~p~~p~  146 (463)
T 2r9z_A           85 AGRDRYIGAINSFWDGYVERLGITRVDGH-ARFVD---AH--TIEV----EGQ--RLSADHIVIATGGRPIVPR  146 (463)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCEEEESC-EEEEE---TT--EEEE----TTE--EEEEEEEEECCCEEECCCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCEEEEeE-EEEcc---CC--EEEE----CCE--EEEcCEEEECCCCCCCCCC
Confidence                    11122334456789999 764 33343   22  3554    455  7999999999999887654

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=97.45  E-value=0.00032  Score=73.83  Aligned_cols=96  Identities=16%  Similarity=0.040  Sum_probs=65.1

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcC------C----------------------------ccC-------
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRL------L----------------------------KHF-------  279 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~------l----------------------------~~~-------  279 (535)
                      -+|+|||||+.|+.+|..|++.|.+|+++++ +.+      .                            ..+       
T Consensus         4 ~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~gG~~~~GG~~~~~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~   83 (476)
T 3lad_A            4 FDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGISTGEV   83 (476)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSBCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTSGGGTEECSCC
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCEEEEEeCCCccCCCCCcCCccccccHHHHHHHHHHHHHHHHHHHHHHhcCcccCCC
Confidence            3699999999999999999999999999998 511      0                            000       


Q ss_pred             --c------------HHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCC
Q psy14461        280 --D------------QEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDF  344 (535)
Q Consensus       280 --~------------~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~  344 (535)
                        +            ..+...+...+++.||++ .+.... +.   .+.+.|..   .+|+..++.+|.+++|+|.+|..
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~-~~---~~~~~v~~---~~g~~~~~~~d~lvlAtG~~p~~  156 (476)
T 3lad_A           84 AIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKL-LA---GKKVEVTA---ADGSSQVLDTENVILASGSKPVE  156 (476)
T ss_dssp             EECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESEEEE-CS---TTCEEEEC---TTSCEEEECCSCEEECCCEEECC
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEE-ec---CCEEEEEc---CCCceEEEEcCEEEEcCCCCCCC
Confidence              0            011122234456678888 665332 22   34455554   36655589999999999998864

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=97.44  E-value=3e-05  Score=81.48  Aligned_cols=88  Identities=10%  Similarity=0.004  Sum_probs=66.6

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCC--CcEEEEEc-CcCC--------cc--CcHHHHHHHHHhhhcCCeEE-cceEEEE
Q psy14461        240 WPGKTLVLGGSLMAVEIAATLNFLG--VPVTLVYS-RRLL--------KH--FDQEMVRILLSSLTKAGVSI-QCCVIEK  305 (535)
Q Consensus       240 ~~k~vvViGgG~~g~e~A~~l~~~g--~~Vtlv~~-~~~l--------~~--~~~~~~~~~~~~l~~~gV~i-~~~~v~~  305 (535)
                      .+++|+|||+|+.|+.+|..|++.|  .+|+++++ +.+.        |.  ...++...+.+.+++.||++ .+..+. 
T Consensus         5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~-   83 (460)
T 1cjc_A            5 QTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEVG-   83 (460)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSCTTCGGGGGHHHHHHHHHTSTTEEEEBSCCBT-
T ss_pred             CCceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCceeecccCCCCccHHHHHHHHHHHHHhCCcEEEeeeEEe-
Confidence            4578999999999999999999998  89999998 6654        22  23456677778888899999 876551 


Q ss_pred             EEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCC
Q psy14461        306 VISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKF  342 (535)
Q Consensus       306 i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p  342 (535)
                            .  .|++.   +.   .+.+|.||+|||..|
T Consensus        84 ------~--~V~~~---~~---~~~~d~lVlAtGs~~  106 (460)
T 1cjc_A           84 ------R--DVTVQ---EL---QDAYHAVVLSYGAED  106 (460)
T ss_dssp             ------T--TBCHH---HH---HHHSSEEEECCCCCE
T ss_pred             ------e--EEEec---cc---eEEcCEEEEecCcCC
Confidence                  1  13331   22   368999999999885

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=97.43  E-value=0.00036  Score=73.70  Aligned_cols=92  Identities=17%  Similarity=0.104  Sum_probs=64.7

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEcCcCCc------------------------------------cCc-----
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLK------------------------------------HFD-----  280 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~l~------------------------------------~~~-----  280 (535)
                      .+|+|||||+.|+.+|..|+++|.+|++++++.+..                                    .++     
T Consensus        27 ~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~GG~~~~~gcip~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~  106 (484)
T 3o0h_A           27 FDLFVIGSGSGGVRAARLAGALGKRVAIAEEYRIGGTCVIRGCVPKKLYFYASQYAQEFSKSIGFGWKYADPIFNWEKLV  106 (484)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHGGGTBCCCCCEECHHHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHhCcCEEEEEeCCCCCCceeccCccccHHHHHHHHHHHHHHHHHhCCcccCCCccCHHHHH
Confidence            479999999999999999999999999999832110                                    000     


Q ss_pred             -------HHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCC
Q psy14461        281 -------QEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFD  343 (535)
Q Consensus       281 -------~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~  343 (535)
                             ..+...+...+++.+|++ .+ .+..++   ..  .+.+.  .+++  ++.+|.+++|+|.+|.
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~i~---~~--~v~v~--~~~~--~~~~d~lviAtG~~p~  167 (484)
T 3o0h_A          107 AAKNKEISRLEGLYREGLQNSNVHIYES-RAVFVD---EH--TLELS--VTGE--RISAEKILIATGAKIV  167 (484)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCEEEES-CEEEEE---TT--EEEET--TTCC--EEEEEEEEECCCEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCEEEEe-EEEEee---CC--EEEEe--cCCe--EEEeCEEEEccCCCcc
Confidence                   122333455667789999 65 444443   22  34442  1555  7999999999999887

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=97.41  E-value=0.00046  Score=72.93  Aligned_cols=97  Identities=14%  Similarity=0.033  Sum_probs=64.5

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc-Cc--------CC-------------------------------------
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RR--------LL-------------------------------------  276 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~--------~l-------------------------------------  276 (535)
                      .|+|||+|+.|+.+|..|++.|.+|+++++ +.        +-                                     
T Consensus         8 DvvVIG~G~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~gciPsk~l~~~~~~~~~~~~~~~~g~~~~~~   87 (488)
T 3dgz_A            8 DLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLMHQAALLGGMIRDAHHYGWEVAQP   87 (488)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTSCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTCCCCSS
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEEecccccccccCCcCCeecccCCcccHHHHHHHHHHHHHHHHHhcCcccCCc
Confidence            699999999999999999999999999984 11        00                                     


Q ss_pred             ccCc-HH-----------HHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCC
Q psy14461        277 KHFD-QE-----------MVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFD  343 (535)
Q Consensus       277 ~~~~-~~-----------~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~  343 (535)
                      +..+ +.           +...+...+++.+|++ .+. +..+.   ...+.|..   .+|+..++.+|.+|+|||.+|.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~g~-~~~~~---~~~v~v~~---~~g~~~~~~~d~lViATGs~p~  160 (488)
T 3dgz_A           88 VQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIK-ASFVD---EHTVRGVD---KGGKATLLSAEHIVIATGGRPR  160 (488)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECCE-EEESS---SSEEEEEC---TTSCEEEEEEEEEEECCCEEEC
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEcc---CCeEEEEe---CCCceEEEECCEEEEcCCCCCC
Confidence            0011 01           1112333456678888 443 33332   23344443   3665568999999999999987


Q ss_pred             CCC
Q psy14461        344 FAA  346 (535)
Q Consensus       344 ~~~  346 (535)
                      ...
T Consensus       161 ~p~  163 (488)
T 3dgz_A          161 YPT  163 (488)
T ss_dssp             CCS
T ss_pred             CCC
Confidence            654

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=97.39  E-value=0.00073  Score=72.74  Aligned_cols=52  Identities=21%  Similarity=0.146  Sum_probs=39.5

Q ss_pred             HhhhcCCeEE-cceEEEEEEEeCCCcE-EEEEecCCCCCceEEEcCEEEEccCCC
Q psy14461        289 SSLTKAGVSI-QCCVIEKVISSFDGMK-GVRGFHPESKEPFADVFKTVVNAMEKK  341 (535)
Q Consensus       289 ~~l~~~gV~i-~~~~v~~i~~~~~~~~-~v~~~~~~~G~~~~~~~D~vi~a~G~~  341 (535)
                      +.+++.|+++ .+++|+++..+ ++++ .|++.+..+|+..++.+|.||.|+|.-
T Consensus       178 ~~a~~~G~~i~~~~~V~~l~~~-~g~v~gV~~~d~~tg~~~~i~A~~VV~AaG~~  231 (561)
T 3da1_A          178 KEAVARGAVALNYMKVESFIYD-QGKVVGVVAKDRLTDTTHTIYAKKVVNAAGPW  231 (561)
T ss_dssp             HHHHHTTCEEEESEEEEEEEEE-TTEEEEEEEEETTTCCEEEEEEEEEEECCGGG
T ss_pred             HHHHHcCCEEEcCCEEEEEEEc-CCeEEEEEEEEcCCCceEEEECCEEEECCCcc
Confidence            3456689999 99999999886 4554 476654345665689999999999964

>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A*

Probab=97.39  E-value=0.00018  Score=61.54  Aligned_cols=66  Identities=12%  Similarity=0.184  Sum_probs=50.3

Q ss_pred             ChhHHHHhhhcCCcEEEEeCCCchhhHHHH-HHHHHhcC---CcceEEEEEeeCCccHHHHHHHHHhhCCCe
Q psy14461         46 TPPAYISRLSYENRILIFTHAVLREENARA-ERYLNARG---DRFAVLYLDRIGDEGILLEEELKRQTNQRR  113 (535)
Q Consensus        46 ~l~~~~~~~i~~~~v~v~~k~~cp~~~~~~-k~~~~~~~---~~~~~~~v~iiG~G~aG~~~al~~~~~~~~  113 (535)
                      .....+..++..++|++|++++|| +|.++ +.++.+.+   .++.+++|+....|.. +...+....+..+
T Consensus        25 ~~~~~v~~~i~~~~Vvvy~~~~Cp-~C~~a~k~~L~~~~~~~i~~~~vdvd~~~~~~~-~~~~L~~~~g~~t   94 (129)
T 3ctg_A           25 ETVAHVKDLIGQKEVFVAAKTYCP-YCKATLSTLFQELNVPKSKALVLELDEMSNGSE-IQDALEEISGQKT   94 (129)
T ss_dssp             HHHHHHHHHHHHSSEEEEECTTCH-HHHHHHHHHHTTSCCCGGGEEEEEGGGSTTHHH-HHHHHHHHHSCCS
T ss_pred             HHHHHHHHHHcCCCEEEEECCCCC-chHHHHHHHHHhcCccCCCcEEEEccccCCHHH-HHHHHHHHhCCCC
Confidence            357778888999999999999999 99999 99999998   7776666655544333 6666766555433

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=97.39  E-value=0.00047  Score=72.06  Aligned_cols=94  Identities=13%  Similarity=0.126  Sum_probs=64.3

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEcCcCCcc-------------------------------------Cc-H--
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKH-------------------------------------FD-Q--  281 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~l~~-------------------------------------~~-~--  281 (535)
                      .+|+|||||+.|+.+|..|++.|.+|+++++..+...                                     .+ +  
T Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~~g~~~~~~~~~~~~l   84 (450)
T 1ges_A            5 YDYIAIGGGSGGIASINRAAMYGQKCALIEAKELGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKFNWETL   84 (450)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEEECHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEcCCCCCCcccccCccChHHHHHHHHHHHHHHHHHHhcCccCCCCccCHHHH
Confidence            4799999999999999999999999999998321100                                     00 0  


Q ss_pred             ---------HHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCC
Q psy14461        282 ---------EMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAAL  347 (535)
Q Consensus       282 ---------~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l  347 (535)
                               .+...+...+++.||++ .+.. ..++   ..  .|.+    +|+  ++.+|.+++|+|.+|....+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~-~~i~---~~--~v~~----~g~--~~~~d~lviAtGs~p~~p~i  148 (450)
T 1ges_A           85 IASRTAYIDRIHTSYENVLGKNNVDVIKGFA-RFVD---AK--TLEV----NGE--TITADHILIATGGRPSHPDI  148 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCEEEESCC-EEEE---TT--EEEE----TTE--EEEEEEEEECCCEEECCCCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCEEEEeEE-EEec---CC--EEEE----CCE--EEEeCEEEECCCCCCCCCCC
Confidence                     11122234456789999 6643 3443   22  3444    455  79999999999998876543

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=97.38  E-value=0.00051  Score=72.69  Aligned_cols=99  Identities=9%  Similarity=-0.089  Sum_probs=65.3

Q ss_pred             CcEEEECCChHHHHHHHHHHh-CCCcEEEEE---------cCcCCc----------------------------------
Q psy14461        242 GKTLVLGGSLMAVEIAATLNF-LGVPVTLVY---------SRRLLK----------------------------------  277 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~-~g~~Vtlv~---------~~~~l~----------------------------------  277 (535)
                      .+|+|||||+.|+.+|..|++ .|.+|++++         ++.+..                                  
T Consensus         4 ~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~   83 (490)
T 1fec_A            4 YDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKKLMVTGANYMDTIRESAGFGWELD   83 (490)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBSCTTCHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEECC
T ss_pred             ccEEEECCCHHHHHHHHHHHHHcCCEEEEEecccccccccCCCcCccccCCCcchhhHHHHHHHHHHHHHHHHhcCcccC
Confidence            369999999999999999999 999999999         332210                                  


Q ss_pred             ----cCc-HH-----------HHHHHHHhhhcC-CeEE-cceEEEEEEEeCCCcEEEEEecC--CCCC-ceEEEcCEEEE
Q psy14461        278 ----HFD-QE-----------MVRILLSSLTKA-GVSI-QCCVIEKVISSFDGMKGVRGFHP--ESKE-PFADVFKTVVN  336 (535)
Q Consensus       278 ----~~~-~~-----------~~~~~~~~l~~~-gV~i-~~~~v~~i~~~~~~~~~v~~~~~--~~G~-~~~~~~D~vi~  336 (535)
                          .++ +.           +...+.+.+++. ||++ .+. +..++   ..  .+.+...  .+|+ ..++.+|.+++
T Consensus        84 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g~-~~~i~---~~--~v~v~~~~~~~g~~~~~~~~d~lvi  157 (490)
T 1fec_A           84 RESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFHQGF-GALQD---NH--TVLVRESADPNSAVLETLDTEYILL  157 (490)
T ss_dssp             GGGCEECHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEEESE-EEEEE---TT--EEEEESSSSTTSCEEEEEEEEEEEE
T ss_pred             CcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeE-EEEee---CC--EEEEEeeccCCCCceEEEEcCEEEE
Confidence                001 01           112233455677 9999 775 55554   23  3444210  1451 13799999999


Q ss_pred             ccCCCCCCCC
Q psy14461        337 AMEKKFDFAA  346 (535)
Q Consensus       337 a~G~~p~~~~  346 (535)
                      |||.+|....
T Consensus       158 AtGs~p~~p~  167 (490)
T 1fec_A          158 ATGSWPQHLG  167 (490)
T ss_dssp             CCCEEECCCC
T ss_pred             eCCCCCCCCC
Confidence            9999987654

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=97.37  E-value=0.00072  Score=70.72  Aligned_cols=93  Identities=16%  Similarity=0.094  Sum_probs=64.3

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRFC  168 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  168 (535)
                      .+++|||+|..|+..|......+.+|+|+|+.+.+      +|..                      + ..+.+      
T Consensus       168 ~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~------l~~~----------------------~-~~~~~------  212 (455)
T 2yqu_A          168 KRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRI------LPTM----------------------D-LEVSR------  212 (455)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS------CTTS----------------------C-HHHHH------
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCcc------cccc----------------------C-HHHHH------
Confidence            46899999999999998777788999999998754      1211                      1 01111      


Q ss_pred             HHHHHHHHHHHHhcCcEEEEeE-EEEe--cCCEEEE--c-eeEEEcceEEEeeCceecC
Q psy14461        169 IRAKNDSMRELKALGIDIVRTA-AAFT--NPHTIKL--S-NRSVTGFNFLLAVERRCLP  221 (535)
Q Consensus       169 ~~~~~~~~~~~~~~gV~~~~g~-~~~~--~~~~v~~--~-~~~~~~d~lViATGs~p~~  221 (535)
                           .+.+.+++.||+++.++ +..+  +...+.+  . +.++.+|.||+|||.+|..
T Consensus       213 -----~l~~~l~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vv~A~G~~p~~  266 (455)
T 2yqu_A          213 -----AAERVFKKQGLTIRTGVRVTAVVPEAKGARVELEGGEVLEADRVLVAVGRRPYT  266 (455)
T ss_dssp             -----HHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEECC
T ss_pred             -----HHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCCeEEEcCEEEECcCCCcCC
Confidence                 12355667799998763 3332  2333433  2 3679999999999999987

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=97.35  E-value=0.00056  Score=69.21  Aligned_cols=33  Identities=15%  Similarity=0.169  Sum_probs=29.9

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-Cc
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RR  274 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~  274 (535)
                      .++|+|||||.+|+-+|..|+ .|.+|+|+++ +.
T Consensus         9 ~~dv~IIGaGi~Gls~A~~La-~G~~V~vlE~~~~   42 (381)
T 3nyc_A            9 EADYLVIGAGIAGASTGYWLS-AHGRVVVLEREAQ   42 (381)
T ss_dssp             ECSEEEECCSHHHHHHHHHHT-TTSCEEEECSSSS
T ss_pred             cCCEEEECCcHHHHHHHHHHh-CCCCEEEEECCCC
Confidence            478999999999999999999 5999999998 53

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=97.35  E-value=0.00064  Score=70.03  Aligned_cols=35  Identities=9%  Similarity=-0.084  Sum_probs=32.0

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHL  123 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~  123 (535)
                      ++|+|||+|++|+.+|+.+...+.+|+|+|+.+..
T Consensus         6 ~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~~~   40 (421)
T 3nix_A            6 VDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFP   40 (421)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSS
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence            68999999999999999988889999999998743

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=97.35  E-value=0.00045  Score=73.18  Aligned_cols=30  Identities=20%  Similarity=0.148  Sum_probs=28.8

Q ss_pred             CcEEEECCChHHHHHHHHHHh-CCCcEEEEE
Q psy14461        242 GKTLVLGGSLMAVEIAATLNF-LGVPVTLVY  271 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~-~g~~Vtlv~  271 (535)
                      .+|+|||||+.|+.+|..|++ .|.+|++++
T Consensus         8 ~dvvVIGgG~aGl~aA~~la~~~G~~V~liE   38 (495)
T 2wpf_A            8 FDLVVIGAGSGGLEAGWNAATLYGKRVAVVD   38 (495)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHCCCEEEEE
T ss_pred             cCEEEECCChhHHHHHHHHHHhcCCeEEEEe
Confidence            479999999999999999999 999999999

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=97.34  E-value=0.0014  Score=68.05  Aligned_cols=31  Identities=23%  Similarity=0.263  Sum_probs=29.6

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCC-cEEEEEc
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGV-PVTLVYS  272 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~-~Vtlv~~  272 (535)
                      .+|+|||||..|+-+|..|++.|. +|+|+++
T Consensus         7 ~dVvIIGgG~aGlsaA~~La~~G~~~V~vlE~   38 (438)
T 3dje_A            7 SSLLIVGAGTWGTSTALHLARRGYTNVTVLDP   38 (438)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCCEEEEES
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCCcEEEEeC
Confidence            479999999999999999999999 9999987

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=97.33  E-value=0.00088  Score=76.77  Aligned_cols=103  Identities=15%  Similarity=0.048  Sum_probs=70.4

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCc---c-----C----cHHHHHHHHHhhhc-CCeEE-cceEEEEE
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLK---H-----F----DQEMVRILLSSLTK-AGVSI-QCCVIEKV  306 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~---~-----~----~~~~~~~~~~~l~~-~gV~i-~~~~v~~i  306 (535)
                      .+|+|||+|+.|+.+|..|++.|.+|+|+++ +.+..   .     +    ..++...+.+.+.+ .+|++ .++++..+
T Consensus       129 ~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~GG~~~~~~k~~i~~~~~~~~~~~~~~~l~~~~~v~~~~~~~V~~i  208 (965)
T 2gag_A          129 TDVLVVGAGPAGLAAAREASRSGARVMLLDERAEAGGTLLDTAGEQIDGMDSSAWIEQVTSELAEAEETTHLQRTTVFGS  208 (965)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGGGSSCCEETTEEHHHHHHHHHHHHHHSTTEEEESSEEEEEE
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCceeccCCccccCCCCHHHHHHHHHHHHhhcCCcEEEeCCEEEee
Confidence            5799999999999999999999999999998 55421   1     1    23444455555655 49999 99999988


Q ss_pred             EEeCCCcEE-EEEec-----C-C----CCCceEEEcCEEEEccCCCCCCCC
Q psy14461        307 ISSFDGMKG-VRGFH-----P-E----SKEPFADVFKTVVNAMEKKFDFAA  346 (535)
Q Consensus       307 ~~~~~~~~~-v~~~~-----~-~----~G~~~~~~~D~vi~a~G~~p~~~~  346 (535)
                      ...  +... +....     . .    +++..++.+|.+|+|||..|....
T Consensus       209 ~~~--~~~~~v~~~~~~~~v~~~~~~~~~~~~~i~~d~lVlATGs~p~~~~  257 (965)
T 2gag_A          209 YDA--NYLIAAQRRTVHLDGPSGPGVSRERIWHIRAKQVVLATGAHERPIV  257 (965)
T ss_dssp             ETT--TEEEEEEECSTTCSSCCCTTCCSEEEEEEEEEEEEECCCEEECCCC
T ss_pred             ecC--CceeeeEeecccccccccccCCCCceEEEECCEEEECCCCccCCCC
Confidence            642  2221 11100     0 0    122236899999999999876543

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=97.33  E-value=0.0012  Score=69.71  Aligned_cols=30  Identities=20%  Similarity=0.235  Sum_probs=28.8

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEE
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVY  271 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~  271 (535)
                      -+|+|||||+.|+.+|..|++.|.+|++++
T Consensus        10 ~DvvVIGgG~aGl~aA~~la~~G~~V~liE   39 (483)
T 3dgh_A           10 YDLIVIGGGSAGLACAKEAVLNGARVACLD   39 (483)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCEEEEEE
Confidence            479999999999999999999999999998

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=97.33  E-value=0.00047  Score=70.61  Aligned_cols=36  Identities=8%  Similarity=-0.256  Sum_probs=32.5

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcc
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHL  123 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~  123 (535)
                      .++|+|||+|++|+.+|+.+...+.+|+|+|+.+..
T Consensus         6 ~~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~~   41 (399)
T 2x3n_A            6 HIDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRE   41 (399)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence            368999999999999999998889999999998754

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.33  E-value=0.00072  Score=70.84  Aligned_cols=93  Identities=19%  Similarity=0.095  Sum_probs=64.7

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRFC  168 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  168 (535)
                      .+++|||+|..|+..|......+.+|+|+++.+.+      ++..                      +. ++.+      
T Consensus       172 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~------l~~~----------------------~~-~~~~------  216 (458)
T 1lvl_A          172 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERI------LPTY----------------------DS-ELTA------  216 (458)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSS------STTS----------------------CH-HHHH------
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCcc------cccc----------------------CH-HHHH------
Confidence            46899999999999998777778899999998754      1211                      10 1111      


Q ss_pred             HHHHHHHHHHHHhcCcEEEEeE-EEEecCCEEEEc---e--eEEEcceEEEeeCceecC
Q psy14461        169 IRAKNDSMRELKALGIDIVRTA-AAFTNPHTIKLS---N--RSVTGFNFLLAVERRCLP  221 (535)
Q Consensus       169 ~~~~~~~~~~~~~~gV~~~~g~-~~~~~~~~v~~~---~--~~~~~d~lViATGs~p~~  221 (535)
                           .+.+.+++.||+++.++ +..++...+.+.   +  .++.+|.||+|||.+|..
T Consensus       217 -----~l~~~l~~~gv~i~~~~~v~~i~~~~v~v~~~~G~~~~i~~D~vv~a~G~~p~~  270 (458)
T 1lvl_A          217 -----PVAESLKKLGIALHLGHSVEGYENGCLLANDGKGGQLRLEADRVLVAVGRRPRT  270 (458)
T ss_dssp             -----HHHHHHHHHTCEEETTCEEEEEETTEEEEECSSSCCCEECCSCEEECCCEEECC
T ss_pred             -----HHHHHHHHCCCEEEECCEEEEEEeCCEEEEECCCceEEEECCEEEECcCCCcCC
Confidence                 12355677899998763 333332335443   3  579999999999999987

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=97.32  E-value=0.00028  Score=74.08  Aligned_cols=95  Identities=21%  Similarity=0.180  Sum_probs=64.3

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEcCcCCc------------------------------------cCc-----
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLK------------------------------------HFD-----  280 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~l~------------------------------------~~~-----  280 (535)
                      -+|+|||||+.|+.+|..|++.|.+|++++++.+..                                    .++     
T Consensus         6 ~DVvVIGaG~aGl~aA~~la~~G~~V~liEk~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~   85 (463)
T 4dna_A            6 YDLFVIGGGSGGVRSGRLAAALGKKVAIAEEFRYGGTCVIRGCVPKKLYVYASQFAEHFEDAAGFGWTVGESRFDWAKLV   85 (463)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEEECCCEECHHHHH
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCEEEEEeCCCCCCcccccCchhhHHHHHHHHHHHHHHHHHhcCcccCCCCcCHHHHH
Confidence            369999999999999999999999999999732110                                    001     


Q ss_pred             -------HHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCC-CCC
Q psy14461        281 -------QEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFD-FAA  346 (535)
Q Consensus       281 -------~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~-~~~  346 (535)
                             ..+...+.+.+++.||++ .+ .+..++   .  ..+.+.  .+++  ++.+|.+++|+|.+|. ...
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~i~---~--~~v~~~--~~~~--~~~~d~lviAtG~~p~~~p~  150 (463)
T 4dna_A           86 AAKEQEIARLEGLYRKGLANAGAEILDT-RAELAG---P--NTVKLL--ASGK--TVTAERIVIAVGGHPSPHDA  150 (463)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCEEEES-CEEESS---S--SEEEET--TTTE--EEEEEEEEECCCEEECCCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEee---C--CEEEEe--cCCe--EEEeCEEEEecCCCcccCCC
Confidence                   122233445566678988 66 333332   1  244442  2455  7999999999999887 543

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=97.31  E-value=7.4e-05  Score=78.37  Aligned_cols=89  Identities=12%  Similarity=0.069  Sum_probs=66.5

Q ss_pred             CCcEEEECCChHHHHHHHHHHh-C------CCcEEEEEc-CcCCc----------cCcHHHHHHHHHhhhcCCeEE-cce
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNF-L------GVPVTLVYS-RRLLK----------HFDQEMVRILLSSLTKAGVSI-QCC  301 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~-~------g~~Vtlv~~-~~~l~----------~~~~~~~~~~~~~l~~~gV~i-~~~  301 (535)
                      +++|+|||||+.|+.+|..|++ .      |.+|+++++ +.+..          ....++...+.+.+++.||++ .+.
T Consensus         3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~~~~gv~p~~~~~~~~~~~~~~~~~~~~v~~~~~v   82 (456)
T 1lqt_A            3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFGNV   82 (456)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTSTTEEEEESC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCccccccCCCCCCHHHHHHHHHHHHhcCCCEEEeeE
Confidence            4689999999999999999999 7      999999999 66532          123456677778888889999 775


Q ss_pred             EEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCC-CCC
Q psy14461        302 VIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKK-FDF  344 (535)
Q Consensus       302 ~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~-p~~  344 (535)
                      .+       +..  |++.   ++   ++.+|.||+|+|.. |..
T Consensus        83 ~v-------~~~--v~~~---~~---~~~~d~lViAtG~~~~~~  111 (456)
T 1lqt_A           83 VV-------GEH--VQPG---EL---SERYDAVIYAVGAQSDRM  111 (456)
T ss_dssp             CB-------TTT--BCHH---HH---HHHSSEEEECCCCCEECC
T ss_pred             EE-------CCE--EEEC---CC---eEeCCEEEEeeCCCCCCC
Confidence            42       121  3332   34   37899999999996 443

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=97.30  E-value=0.00024  Score=78.27  Aligned_cols=86  Identities=15%  Similarity=0.095  Sum_probs=63.4

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC---------ccC--cHHHHHHHHHhhhcCCeEE-cceEEEEEE
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL---------KHF--DQEMVRILLSSLTKAGVSI-QCCVIEKVI  307 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l---------~~~--~~~~~~~~~~~l~~~gV~i-~~~~v~~i~  307 (535)
                      .++|+|||||+.|+.+|..|++.|.+|+|+++ +.+.         +..  ..+....+.+.+++.||++ .++.++   
T Consensus       373 ~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~---  449 (671)
T 1ps9_A          373 KKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTVT---  449 (671)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCCCC---
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCeeeccccCCCHHHHHHHHHHHHHHHHHcCCEEEeCcEec---
Confidence            46899999999999999999999999999998 6542         111  1234445666677788888 765331   


Q ss_pred             EeCCCcEEEEEecCCCCCceEE-EcCEEEEccCCCCCCCCC
Q psy14461        308 SSFDGMKGVRGFHPESKEPFAD-VFKTVVNAMEKKFDFAAL  347 (535)
Q Consensus       308 ~~~~~~~~v~~~~~~~G~~~~~-~~D~vi~a~G~~p~~~~l  347 (535)
                                      ..  .+ .+|.+++|||.+|....+
T Consensus       450 ----------------~~--~~~~~d~lviAtG~~p~~~~i  472 (671)
T 1ps9_A          450 ----------------AD--QLQAFDETILASGIVPRTPPI  472 (671)
T ss_dssp             ----------------SS--SSCCSSEEEECCCEEECCCCC
T ss_pred             ----------------HH--HhhcCCEEEEccCCCcCCCCC
Confidence                            01  23 799999999999876543

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=97.29  E-value=0.00089  Score=70.70  Aligned_cols=47  Identities=9%  Similarity=0.039  Sum_probs=35.6

Q ss_pred             hhhcCCeEE-cceEEEEEEEeCCCcEE-EEEecCCCCCceEEEcCEEEEccCCCC
Q psy14461        290 SLTKAGVSI-QCCVIEKVISSFDGMKG-VRGFHPESKEPFADVFKTVVNAMEKKF  342 (535)
Q Consensus       290 ~l~~~gV~i-~~~~v~~i~~~~~~~~~-v~~~~~~~G~~~~~~~D~vi~a~G~~p  342 (535)
                      .+++.|++| +++.|++|..+ +++++ |++   .+|+  ++.+|.||.+++...
T Consensus       230 ~~~~~Gg~I~~~~~V~~I~~~-~~~~~gV~~---~~g~--~~~ad~VV~~a~~~~  278 (501)
T 4dgk_A          230 LFQDLGGEVVLNARVSHMETT-GNKIEAVHL---EDGR--RFLTQAVASNADVVH  278 (501)
T ss_dssp             HHHHTTCEEECSCCEEEEEEE-TTEEEEEEE---TTSC--EEECSCEEECCC---
T ss_pred             HHHHhCCceeeecceeEEEee-CCeEEEEEe---cCCc--EEEcCEEEECCCHHH
Confidence            345678999 99999999887 56654 676   4788  899999999876543

>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=97.29  E-value=0.00034  Score=57.85  Aligned_cols=70  Identities=19%  Similarity=0.221  Sum_probs=49.6

Q ss_pred             hhHHHHhhhcCCcEEEEeC-----CCchhhHHHHHHHHHhcCCcceEEEEEeeCCccHHHHHHHHHhhCCCeE-EEEecC
Q psy14461         47 PPAYISRLSYENRILIFTH-----AVLREENARAERYLNARGDRFAVLYLDRIGDEGILLEEELKRQTNQRRD-ELQERG  120 (535)
Q Consensus        47 l~~~~~~~i~~~~v~v~~k-----~~cp~~~~~~k~~~~~~~~~~~~~~v~iiG~G~aG~~~al~~~~~~~~V-~lie~~  120 (535)
                      +...+..++.+++|++|++     ++|| +|.+++.++.+.+.++..++|.  -. +. +...+....+..+| +|+-.+
T Consensus         4 ~~~~~~~~i~~~~vvvy~~g~~~~~~Cp-~C~~ak~~L~~~~i~~~~vdi~--~~-~~-~~~~l~~~~g~~~vP~ifi~g   78 (109)
T 1wik_A            4 GSSGLKVLTNKASVMLFMKGNKQEAKCG-FSKQILEILNSTGVEYETFDIL--ED-EE-VRQGLKTFSNWPTYPQLYVRG   78 (109)
T ss_dssp             SCCCHHHHHTTSSEEEEESSTTTCCCSS-THHHHHHHHHHTCSCEEEEESS--SC-HH-HHHHHHHHHSCCSSCEEECSS
T ss_pred             HHHHHHHHhccCCEEEEEecCCCCCCCc-hHHHHHHHHHHcCCCeEEEECC--CC-HH-HHHHHHHHhCCCCCCEEEECC
Confidence            4455677888999999999     9999 9999999999999876555443  22 43 66667665555444 444333


Q ss_pred             C
Q psy14461        121 S  121 (535)
Q Consensus       121 ~  121 (535)
                      .
T Consensus        79 ~   79 (109)
T 1wik_A           79 D   79 (109)
T ss_dssp             S
T ss_pred             E
Confidence            3

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=97.27  E-value=0.0015  Score=72.15  Aligned_cols=35  Identities=23%  Similarity=0.301  Sum_probs=31.7

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcC
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRL  275 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~  275 (535)
                      ..+|+|||||.+|+-+|..|++.|.+|+|+++ +.+
T Consensus       264 ~~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~~~  299 (689)
T 3pvc_A          264 CDDIAIIGGGIVSALTALALQRRGAVVTLYCADAQP  299 (689)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHTTTCCEEEEESSSST
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCcEEEEeCCCcc
Confidence            36899999999999999999999999999998 533

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=97.27  E-value=0.00098  Score=66.92  Aligned_cols=34  Identities=12%  Similarity=-0.065  Sum_probs=31.6

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSH  122 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~  122 (535)
                      ++|+|||+|.+|+.+|+.+...+.+|+|+|+++.
T Consensus         5 ~dvvIIG~G~~Gl~~A~~La~~G~~V~vlE~~~~   38 (369)
T 3dme_A            5 IDCIVIGAGVVGLAIARALAAGGHEVLVAEAAEG   38 (369)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            6899999999999999999889999999999863

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=97.26  E-value=0.0019  Score=69.04  Aligned_cols=32  Identities=22%  Similarity=0.199  Sum_probs=30.1

Q ss_pred             CCcEEEECCChHHHHHHHHHHh---CCCcEEEEEc
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNF---LGVPVTLVYS  272 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~---~g~~Vtlv~~  272 (535)
                      ..+|+|||||.+|+-+|..|++   .|.+|+|+++
T Consensus         5 ~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~   39 (538)
T 2aqj_A            5 IKNIVIVGGGTAGWMAASYLVRALQQQANITLIES   39 (538)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCCSSCEEEEEEC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhcCCCCEEEEECC
Confidence            3589999999999999999999   9999999997

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=97.26  E-value=0.00072  Score=73.34  Aligned_cols=32  Identities=13%  Similarity=0.146  Sum_probs=30.1

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      ..+|+|||||+.|+.+|..|+++|.+|+++++
T Consensus       107 ~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~  138 (598)
T 2x8g_A          107 DYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDY  138 (598)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTTCCEEEECC
T ss_pred             cccEEEECCCccHHHHHHHHHhCCCeEEEEec
Confidence            45899999999999999999999999999985

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=97.26  E-value=0.0027  Score=63.51  Aligned_cols=162  Identities=14%  Similarity=0.154  Sum_probs=95.8

Q ss_pred             CcEEEECCChHHHHHHHHHHhC--CCcEEEEEc-CcCCc--------------------------------------cCc
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFL--GVPVTLVYS-RRLLK--------------------------------------HFD  280 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~--g~~Vtlv~~-~~~l~--------------------------------------~~~  280 (535)
                      -+|+|||||+.|+.+|..|+++  |.+|+|+++ +.+..                                      ...
T Consensus        80 ~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~~~G~~~~~~~~  159 (344)
T 3jsk_A           80 TDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAWLGGQLFSAMVMRKPADVFLDEVGVPYEDEGDYVVVKHA  159 (344)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTTTTCCBTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESCH
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCccccCCccchhhhcchHHHHHHHHcCCcccccCCeEEEecH
Confidence            4799999999999999999997  999999998 53310                                      001


Q ss_pred             HHHHHHHHHhhhc-CCeEE-cceEEEEEEEeCC----------------C--cE-EEEEec---CCCC------CceEEE
Q psy14461        281 QEMVRILLSSLTK-AGVSI-QCCVIEKVISSFD----------------G--MK-GVRGFH---PESK------EPFADV  330 (535)
Q Consensus       281 ~~~~~~~~~~l~~-~gV~i-~~~~v~~i~~~~~----------------~--~~-~v~~~~---~~~G------~~~~~~  330 (535)
                      .++.+.+.+.+.+ .|+++ .++.++++..+++                +  ++ -|....   ..+|      +..++.
T Consensus       160 ~d~~~~L~~~a~~~~gV~i~~~~~V~dLi~~~d~~~~~~~~~~g~~~~~g~~rV~GVv~~~~~v~~~g~~~~~~d~~~i~  239 (344)
T 3jsk_A          160 ALFTSTVLSKVLQRPNVKLFNATTVEDLITRKHHAESSSSSDDGEAEDEAKVRIAGVVTNWTLVSMHHDDQSAMDPNTIN  239 (344)
T ss_dssp             HHHHHHHHHHHHTCTTEEEEETEEEEEEEEEEC----------------CCEEEEEEEEEEHHHHTTSSSSSCCBCEEEE
T ss_pred             HHHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCcccccccccccccccCCCceEeEEEeeeeeeeccCCcccccCceEEE
Confidence            3344555666666 59999 9999999876521                2  22 133311   0122      335899


Q ss_pred             cCEEEEccCCCCCCCCCC---ccccCeeecCCCc--eEcC-------CCCCcCCCCEEEeCCcCC---CC----CCcHHH
Q psy14461        331 FKTVVNAMEKKFDFAALN---LHHIGVDIKKKSY--VVCN-------EKDQTSVGNIFAVGGIVH---GK----PNNASM  391 (535)
Q Consensus       331 ~D~vi~a~G~~p~~~~l~---l~~~gl~~~~~G~--i~vd-------~~~~T~~~~IyA~GD~~~---~~----~~~~~~  391 (535)
                      ++.||.|+|........-   +...++...-.|.  ..++       ++.+--+|++|++|=.++   |.    |.+.. 
T Consensus       240 Ak~VV~ATG~~s~v~~~~~~~l~~~~~~~~~~g~~~~~~~~~e~~~v~~t~~v~~gl~~~gm~~~~~~g~~rmgp~fg~-  318 (344)
T 3jsk_A          240 APVIISTTGHDGPFGAFSVKRLVSMKQMERLNGMRGLDMQSAEDAIVNNTREIVPGLIVGGMELSEIDGANRMGPTFGA-  318 (344)
T ss_dssp             CSEEEECCCSSSSSSCHHHHHHHHTTSSSCCCCCEEECHHHHHHHHHHTCEEEETTEEECGGGHHHHHTCEECCSCCHH-
T ss_pred             cCEEEECCCCCchhhHHHHHHHhhcCcccccCCCcccccccchhhhcccCceEcCCEEEechhhHhhcCCCCCCcccce-
Confidence            999999999876532110   0111221000111  1111       011113699999997665   32    33332 


Q ss_pred             HHHHHHHHHHHHh
Q psy14461        392 AAISARLIIERLY  404 (535)
Q Consensus       392 A~~~g~~aa~~i~  404 (535)
                      =...|+.||+-|+
T Consensus       319 m~~sg~~~a~~~~  331 (344)
T 3jsk_A          319 MALSGVKAAHEAI  331 (344)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             eeecCHHHHHHHH
Confidence            2456777777765

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=97.24  E-value=0.0012  Score=72.28  Aligned_cols=100  Identities=11%  Similarity=0.011  Sum_probs=73.2

Q ss_pred             CcEEEECCChHHHHHHHHHHh-CCCcEEEEEc-CcCCcc-----------------------------------------
Q psy14461        242 GKTLVLGGSLMAVEIAATLNF-LGVPVTLVYS-RRLLKH-----------------------------------------  278 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~-~g~~Vtlv~~-~~~l~~-----------------------------------------  278 (535)
                      -+|+|||||++|+-+|..|++ .|.+|+|+++ +.+...                                         
T Consensus        33 ~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~~~~~g~a~~l~~~t~e~l~~lGl~~~~~~~~~~~~~~~~~~~~~~  112 (639)
T 2dkh_A           33 VDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPMELGQADGIACRTMEMFEAFEFADSILKEACWINDVTFWKPDPG  112 (639)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSSCCSSCSCCEECHHHHHHHHHTTCHHHHHHHSEEECEEEEEEECTT
T ss_pred             CcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCcHHHHHHhcccccceEEECCCCC
Confidence            369999999999999999999 9999999987 432100                                         


Q ss_pred             -------------------------Cc-HHHHHHHHHhhhcCCe--EE-cceEEEEEEEeCC---CcEEEEEecC---CC
Q psy14461        279 -------------------------FD-QEMVRILLSSLTKAGV--SI-QCCVIEKVISSFD---GMKGVRGFHP---ES  323 (535)
Q Consensus       279 -------------------------~~-~~~~~~~~~~l~~~gV--~i-~~~~v~~i~~~~~---~~~~v~~~~~---~~  323 (535)
                                               .+ ..+.+.+.+.+++.|+  ++ .++++++++.+++   ..+.|++++.   .+
T Consensus       113 ~~g~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~a~~~g~~v~v~~~~~v~~l~~~~~~~~~~v~v~~~~~~~~~~  192 (639)
T 2dkh_A          113 QPGRIARHGRVQDTEDGLSEFPHVILNQARVHDHYLERMRNSPSRLEPHYARRVLDVKVDHGAADYPVTVTLERCDAAHA  192 (639)
T ss_dssp             STTCEEEEEEEESSCTTSCSSCEEECCHHHHHHHHHHHHHHSTTCCCCBCSEEEEEEEECTTCSSCCEEEEEEECSGGGT
T ss_pred             CCcceEeecccCcccCCCCCCceEeeCHHHHHHHHHHHHHhCCCCcEEecCCEEEEEEECCCCCcCCEEEEEEeccccCC
Confidence                                     00 2344556666777776  99 9999999987632   2477777520   14


Q ss_pred             CCceEEEcCEEEEccCCC
Q psy14461        324 KEPFADVFKTVVNAMEKK  341 (535)
Q Consensus       324 G~~~~~~~D~vi~a~G~~  341 (535)
                      |+..++.+|.||.|.|..
T Consensus       193 G~~~~i~a~~vVgADG~~  210 (639)
T 2dkh_A          193 GQIETVQARYVVGCDGAR  210 (639)
T ss_dssp             TCEEEEEEEEEEECCCTT
T ss_pred             CCeEEEEeCEEEECCCcc
Confidence            655589999999999964

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=97.23  E-value=0.00012  Score=84.59  Aligned_cols=91  Identities=14%  Similarity=0.165  Sum_probs=67.9

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCC-cEEEEEc-CcCC-------c--cCcHHHHHHHHHhhhcCCeEE-cceEEEEEEE
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLGV-PVTLVYS-RRLL-------K--HFDQEMVRILLSSLTKAGVSI-QCCVIEKVIS  308 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g~-~Vtlv~~-~~~l-------~--~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~  308 (535)
                      .++|+|||||+.|+.+|..|++.|. +|+++++ +.+.       |  .++.++.+...+.+++.||++ .++.+..   
T Consensus       187 ~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~GG~~~~~ip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~---  263 (1025)
T 1gte_A          187 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSE---  263 (1025)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHTTTCEEEESCCBST---
T ss_pred             CCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCCCccccccCCcccCCHHHHHHHHHHHHHCCcEEEcccEecc---
Confidence            4789999999999999999999998 7999999 6542       1  234556666677888899999 8876521   


Q ss_pred             eCCCcEEEEEecCCCCCceEEEcCEEEEccCC-CCCC
Q psy14461        309 SFDGMKGVRGFHPESKEPFADVFKTVVNAMEK-KFDF  344 (535)
Q Consensus       309 ~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~-~p~~  344 (535)
                         .  .+++.   +++  ++.+|.|++|||. +|..
T Consensus       264 ---~--~v~~~---~~~--~~~~d~vvlAtGa~~p~~  290 (1025)
T 1gte_A          264 ---N--EITLN---TLK--EEGYKAAFIGIGLPEPKT  290 (1025)
T ss_dssp             ---T--SBCHH---HHH--HTTCCEEEECCCCCEECC
T ss_pred             ---c--eEEhh---hcC--ccCCCEEEEecCCCCCCC
Confidence               1  12232   333  4689999999998 5764

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=97.23  E-value=0.0011  Score=69.47  Aligned_cols=93  Identities=19%  Similarity=0.056  Sum_probs=64.4

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRFC  168 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  168 (535)
                      .+++|||+|..|+..|......+.+|+|+|+.+.+      ++..                      +. ++.       
T Consensus       170 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~------l~~~----------------------~~-~~~-------  213 (464)
T 2eq6_A          170 KRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEI------LPQG----------------------DP-ETA-------  213 (464)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS------STTS----------------------CH-HHH-------
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCcc------cccc----------------------CH-HHH-------
Confidence            46799999999999998777788999999998754      1111                      10 111       


Q ss_pred             HHHHHHHHHHHHhcCcEEEEeE-EEEe--cCC--EEEEc----ee--EEEcceEEEeeCceecC
Q psy14461        169 IRAKNDSMRELKALGIDIVRTA-AAFT--NPH--TIKLS----NR--SVTGFNFLLAVERRCLP  221 (535)
Q Consensus       169 ~~~~~~~~~~~~~~gV~~~~g~-~~~~--~~~--~v~~~----~~--~~~~d~lViATGs~p~~  221 (535)
                          ..+.+.+++.||+++.++ +..+  +..  .+.+.    +.  ++.+|.||+|+|.+|..
T Consensus       214 ----~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vv~a~G~~p~~  273 (464)
T 2eq6_A          214 ----ALLRRALEKEGIRVRTKTKAVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVGRKPRT  273 (464)
T ss_dssp             ----HHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTCCSCEEEEESEEEECSCEEESC
T ss_pred             ----HHHHHHHHhcCCEEEcCCEEEEEEEeCCEEEEEEeecCCCceeEEEcCEEEECCCcccCC
Confidence                122356777899999874 3332  222  34443    33  79999999999999987

>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A

Probab=97.21  E-value=0.00043  Score=59.63  Aligned_cols=65  Identities=28%  Similarity=0.250  Sum_probs=50.7

Q ss_pred             CChhHHHHhhhcCCcEEEEeC-----CCchhhHHHHHHHHHhcCCcceEEEEEeeCCccHHHHHHHHHhhCCCeE
Q psy14461         45 ETPPAYISRLSYENRILIFTH-----AVLREENARAERYLNARGDRFAVLYLDRIGDEGILLEEELKRQTNQRRD  114 (535)
Q Consensus        45 ~~l~~~~~~~i~~~~v~v~~k-----~~cp~~~~~~k~~~~~~~~~~~~~~v~iiG~G~aG~~~al~~~~~~~~V  114 (535)
                      +++...+..++..++|++|++     .+|| +|.++++++.+.+.++..++|.  -. +. +...+....+..+|
T Consensus        22 ~~~~~~v~~~i~~~~Vvvy~ks~~~~~~Cp-~C~~ak~~L~~~gv~y~~vdI~--~d-~~-~~~~L~~~~G~~tv   91 (135)
T 2wci_A           22 STTIEKIQRQIAENPILLYMKGSPKLPSCG-FSAQAVQALAACGERFAYVDIL--QN-PD-IRAELPKYANWPTF   91 (135)
T ss_dssp             CHHHHHHHHHHHHCSEEEEESBCSSSBSSH-HHHHHHHHHHTTCSCCEEEEGG--GC-HH-HHHHHHHHHTCCSS
T ss_pred             HHHHHHHHHHhccCCEEEEEEecCCCCCCc-cHHHHHHHHHHcCCceEEEECC--CC-HH-HHHHHHHHHCCCCc
Confidence            356888999999999999999     8999 9999999999999887655543  23 44 67777766555444

>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}

Probab=97.21  E-value=0.00052  Score=54.86  Aligned_cols=34  Identities=15%  Similarity=0.109  Sum_probs=29.2

Q ss_pred             CCcEEEEeCCCchhhHHHHHHHHHhcCCcceEEEE
Q psy14461         57 ENRILIFTHAVLREENARAERYLNARGDRFAVLYL   91 (535)
Q Consensus        57 ~~~v~v~~k~~cp~~~~~~k~~~~~~~~~~~~~~v   91 (535)
                      +.+|.+|++++|| ||.++|+++.+.|.+++.++|
T Consensus         3 ta~I~vYs~~~Cp-~C~~aK~~L~~~gi~y~~idi   36 (92)
T 2lqo_A            3 TAALTIYTTSWCG-YCLRLKTALTANRIAYDEVDI   36 (92)
T ss_dssp             SSCEEEEECTTCS-SHHHHHHHHHHTTCCCEEEET
T ss_pred             CCcEEEEcCCCCH-hHHHHHHHHHhcCCceEEEEc
Confidence            3469999999999 999999999999988765553

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=97.21  E-value=0.0036  Score=62.18  Aligned_cols=161  Identities=16%  Similarity=0.227  Sum_probs=94.9

Q ss_pred             CcEEEECCChHHHHHHHHHHhC--CCcEEEEEc-CcCCcc--------------------------------------Cc
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFL--GVPVTLVYS-RRLLKH--------------------------------------FD  280 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~--g~~Vtlv~~-~~~l~~--------------------------------------~~  280 (535)
                      -+|+|||+|+.|+.+|..|++.  |.+|+++++ +.+...                                      ..
T Consensus        66 ~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~~~g~~~~~~~~  145 (326)
T 2gjc_A           66 SDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYEDEGDYVVVKHA  145 (326)
T ss_dssp             ESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCGGGCCCEEEETTTHHHHHHTTCCCEECSSEEEESCH
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCccccccccccCcccchhhhhhHHHHHHHhhCcccccCCCeEEEcch
Confidence            3799999999999999999998  999999998 543200                                      01


Q ss_pred             HHHHHHHHHhhhc-CCeEE-cceEEEEEEEeC--C-C--cEE-EEEec---CCCC------CceEEEc------------
Q psy14461        281 QEMVRILLSSLTK-AGVSI-QCCVIEKVISSF--D-G--MKG-VRGFH---PESK------EPFADVF------------  331 (535)
Q Consensus       281 ~~~~~~~~~~l~~-~gV~i-~~~~v~~i~~~~--~-~--~~~-v~~~~---~~~G------~~~~~~~------------  331 (535)
                      .++...+.+.+.+ .||++ .++.++++..++  + +  ++. |.+..   ..+|      ...++.+            
T Consensus       146 ~~~~~~L~~~a~~~~GV~i~~~~~V~~Ll~~~~~~~g~~rV~GVvv~~~~v~~~g~~~~~~d~~~I~A~G~~~~~~~~~~  225 (326)
T 2gjc_A          146 ALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTQCCMDPNVIELAGYKNDGTRDLS  225 (326)
T ss_dssp             HHHHHHHHHHHHTSTTEEEETTEEEEEEEECCCC-----CEEEEEEEEHHHHTC---CCCCCCEEEEESCCCSSSCCCSS
T ss_pred             HHHHHHHHHHHHHhcCcEEEecceeeeeeecccccCCCcEEEEEEecceeecccccceeccCceEEEEeecccccccccc
Confidence            3344555665666 49999 999999997652  2 2  332 33321   0122      3347999            


Q ss_pred             ---CEEEEccCCCCCCCCCCccccCeeecCCCceE----cC---------CCCCc--CCCCEEEeCCcCC---C----CC
Q psy14461        332 ---KTVVNAMEKKFDFAALNLHHIGVDIKKKSYVV----CN---------EKDQT--SVGNIFAVGGIVH---G----KP  386 (535)
Q Consensus       332 ---D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~----vd---------~~~~T--~~~~IyA~GD~~~---~----~~  386 (535)
                         |.||.|+|.......+-.... ..++..+.+.    .|         +..+-  -+|++|++|-...   +    +|
T Consensus       226 ~~~~~VV~ATG~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~r~g~  304 (326)
T 2gjc_A          226 QKHGVILSTTGHDGPFGAFCAKRI-VDIDQNQKLGGMKGLDMNHAEHDVVIHSGAYAGVDNMYFAGMEVAELDGLNRMGP  304 (326)
T ss_dssp             TTCCEEEECCCCC--CCSHHHHHH-HHHHSSCCCCCCCCBCHHHHHHHHHHHCEECTTSTTEEECTHHHHHHHTCCBCCS
T ss_pred             ccCCEEEECcCCCchHHHHHHhhc-cccccccccCceeccccccchhheeecCCCccccCCEEECChHHHHhcCCCCCCh
Confidence               999999998765432200111 0111111111    01         01111  5799999998764   2    23


Q ss_pred             CcHHHHHHHHHHHHHHHh
Q psy14461        387 NNASMAAISARLIIERLY  404 (535)
Q Consensus       387 ~~~~~A~~~g~~aa~~i~  404 (535)
                      .+.. -.-.|+.||+.|+
T Consensus       305 ~fg~-m~~sg~~~a~~~~  321 (326)
T 2gjc_A          305 TFGA-MALSGVHAAEQIL  321 (326)
T ss_dssp             CCHH-HHHHHHHHHHHHH
T ss_pred             hhhh-hhhhhHHHHHHHH
Confidence            3332 2446777877765

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=97.21  E-value=0.0019  Score=70.03  Aligned_cols=98  Identities=11%  Similarity=0.096  Sum_probs=69.3

Q ss_pred             CcEEEECCChHHHHHHHHHHhCC--CcEEEEEc-CcCCc-----------cC---------------------c------
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLG--VPVTLVYS-RRLLK-----------HF---------------------D------  280 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g--~~Vtlv~~-~~~l~-----------~~---------------------~------  280 (535)
                      -.|+|||+|..|+-+|..|++.|  .+|+|+++ +....           .+                     +      
T Consensus         6 ~DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~~~~~~s~~a~GGi~~~~~~~ds~~~~~~d~~~~g~~~~d~~~v~~   85 (602)
T 1kf6_A            6 ADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFEYHFHDTVAGGDWLCEQDVVDY   85 (602)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSGGGGCCSCEECCCSTTCCHHHHHHHHHHHTTTCSCHHHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCCCCCChHHHhcCccEEeCCCCCCHHHHHHHHHHhcCCCCCHHHHHH
Confidence            36999999999999999999999  99999998 42200           00                     0      


Q ss_pred             ------------------------------------------------HHHHHHHHHhhhcCC-eEE-cceEEEEEEEeC
Q psy14461        281 ------------------------------------------------QEMVRILLSSLTKAG-VSI-QCCVIEKVISSF  310 (535)
Q Consensus       281 ------------------------------------------------~~~~~~~~~~l~~~g-V~i-~~~~v~~i~~~~  310 (535)
                                                                      ..+...+.+.+++.| |++ .++.++++..+ 
T Consensus        86 ~~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~d~tg~~l~~~L~~~~~~~gnv~i~~~~~v~~l~~~-  164 (602)
T 1kf6_A           86 FVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILVD-  164 (602)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCBCTTSSBCCBCCTTCSSCCEECSTTCHHHHHHHHHHHHHTTCTTEEEEETEEEEEEEEE-
T ss_pred             HHHHHHHHHHHHHHcCCCcccCCCCcccccccCCccCCeEEEcCCCCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEe-
Confidence                                                            122233334445667 999 99999999876 


Q ss_pred             CCcE-EEEEecCCCCCceEEEcCEEEEccCC
Q psy14461        311 DGMK-GVRGFHPESKEPFADVFKTVVNAMEK  340 (535)
Q Consensus       311 ~~~~-~v~~~~~~~G~~~~~~~D~vi~a~G~  340 (535)
                      ++++ .|...+..+|+...+.++.||+|+|.
T Consensus       165 ~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg  195 (602)
T 1kf6_A          165 DGHVRGLVAMNMMEGTLVQIRANAVVMATGG  195 (602)
T ss_dssp             TTEEEEEEEEETTTTEEEEEECSCEEECCCC
T ss_pred             CCEEEEEEEEEcCCCcEEEEEcCeEEECCCC
Confidence            4544 24333224676567999999999994

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=97.21  E-value=0.0011  Score=67.34  Aligned_cols=35  Identities=17%  Similarity=0.014  Sum_probs=32.1

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCc
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSH  122 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~  122 (535)
                      ..+|+|||+|.+|+.+|+.+...+.+|+|+|+...
T Consensus        17 ~~dvvIIGgG~~Gl~~A~~La~~G~~V~llE~~~~   51 (382)
T 1ryi_A           17 HYEAVVIGGGIIGSAIAYYLAKENKNTALFESGTM   51 (382)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSST
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence            47999999999999999999888999999999864

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=97.21  E-value=0.0013  Score=66.41  Aligned_cols=35  Identities=14%  Similarity=-0.111  Sum_probs=31.0

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcc
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHL  123 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~  123 (535)
                      ..+|+|||+|.+|+++|+.+. .+.+|+|+|+++.+
T Consensus         9 ~~dv~IIGaGi~Gls~A~~La-~G~~V~vlE~~~~~   43 (381)
T 3nyc_A            9 EADYLVIGAGIAGASTGYWLS-AHGRVVVLEREAQP   43 (381)
T ss_dssp             ECSEEEECCSHHHHHHHHHHT-TTSCEEEECSSSST
T ss_pred             cCCEEEECCcHHHHHHHHHHh-CCCCEEEEECCCCc
Confidence            467899999999999999888 58999999998644

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=97.19  E-value=0.00033  Score=72.11  Aligned_cols=31  Identities=29%  Similarity=0.282  Sum_probs=29.4

Q ss_pred             CcEEEECCChHHHHHHHHHHhC--CCcEEEEEc
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFL--GVPVTLVYS  272 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~--g~~Vtlv~~  272 (535)
                      .+|+|||||.+|+-+|..|++.  |.+|+|+++
T Consensus        37 ~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~   69 (405)
T 3c4n_A           37 FDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEE   69 (405)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTSCEEEECS
T ss_pred             CCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeC
Confidence            4799999999999999999999  999999987

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=97.18  E-value=0.002  Score=64.98  Aligned_cols=35  Identities=9%  Similarity=-0.099  Sum_probs=31.7

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHL  123 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~  123 (535)
                      .+|+|||+|.+|+++|+.+...+.+|+|+|+....
T Consensus         3 ~dvvIIG~Gi~Gl~~A~~La~~G~~V~vle~~~~~   37 (372)
T 2uzz_A            3 YDLIIIGSGSVGAAAGYYATRAGLNVLMTDAHMPP   37 (372)
T ss_dssp             EEEEESCTTHHHHHHHHHHHHTTCCEEEECSSCSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            58999999999999999988889999999998643

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=97.17  E-value=0.00023  Score=67.31  Aligned_cols=38  Identities=13%  Similarity=0.013  Sum_probs=34.0

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFR  126 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~  126 (535)
                      .+|+|||+||+|+.+|+.+...+.+|+||||.+.+++.
T Consensus         3 ~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~GG~   40 (336)
T 3kkj_A            3 VPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSGGR   40 (336)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGG
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCc
Confidence            46899999999999999999999999999999877543

>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*

Probab=97.14  E-value=0.00053  Score=57.59  Aligned_cols=65  Identities=17%  Similarity=0.180  Sum_probs=47.3

Q ss_pred             hhHHHHhhhcCCcEEEEeCCCchhhHHHH-HHHHHhcC---CcceEEEEEeeCCccHHHHHHHHHhhCCCe
Q psy14461         47 PPAYISRLSYENRILIFTHAVLREENARA-ERYLNARG---DRFAVLYLDRIGDEGILLEEELKRQTNQRR  113 (535)
Q Consensus        47 l~~~~~~~i~~~~v~v~~k~~cp~~~~~~-k~~~~~~~---~~~~~~~v~iiG~G~aG~~~al~~~~~~~~  113 (535)
                      ....+..++..++|++|++++|| +|.++ +.++.+.+   .++..++++....|.. ....+....+..+
T Consensus        14 ~~~~~~~~i~~~~Vvvf~~~~Cp-~C~~alk~~L~~~~~~~i~~~~vdid~~~~~~~-~~~~l~~~~g~~t   82 (118)
T 3c1r_A           14 TIKHVKDLIAENEIFVASKTYCP-YCHAALNTLFEKLKVPRSKVLVLQLNDMKEGAD-IQAALYEINGQRT   82 (118)
T ss_dssp             HHHHHHHHHHHSSEEEEECSSCH-HHHHHHHHHHTTSCCCGGGEEEEEGGGSTTHHH-HHHHHHHHHSCCS
T ss_pred             HHHHHHHHHccCcEEEEEcCCCc-CHHHHHHHHHHHcCCCCCCeEEEECccCCChHH-HHHHHHHHhCCCC
Confidence            45677888888999999999999 99999 99999888   6665555554433333 5566665554433

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=97.13  E-value=0.0028  Score=65.25  Aligned_cols=48  Identities=10%  Similarity=0.187  Sum_probs=37.1

Q ss_pred             HhhhcCCeEE-cceEEEEEEEeCCCcEE-EEEecCCCCCceEEEcCEEEEccCCCCC
Q psy14461        289 SSLTKAGVSI-QCCVIEKVISSFDGMKG-VRGFHPESKEPFADVFKTVVNAMEKKFD  343 (535)
Q Consensus       289 ~~l~~~gV~i-~~~~v~~i~~~~~~~~~-v~~~~~~~G~~~~~~~D~vi~a~G~~p~  343 (535)
                      +.+++.|+++ +++.|++|..+ ++++. |++    +|+  ++.+|.||+|+|....
T Consensus       204 ~~~~~~G~~i~~~~~V~~i~~~-~~~~~gv~~----~g~--~~~ad~VV~a~~~~~~  253 (425)
T 3ka7_A          204 TVISANGGKIHTGQEVSKILIE-NGKAAGIIA----DDR--IHDADLVISNLGHAAT  253 (425)
T ss_dssp             HHHHHTTCEEECSCCEEEEEEE-TTEEEEEEE----TTE--EEECSEEEECSCHHHH
T ss_pred             HHHHHcCCEEEECCceeEEEEE-CCEEEEEEE----CCE--EEECCEEEECCCHHHH
Confidence            4456679999 99999999876 46554 554    565  7999999999986543

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=97.13  E-value=0.00084  Score=67.18  Aligned_cols=37  Identities=3%  Similarity=-0.252  Sum_probs=32.6

Q ss_pred             EEEEeeCCccHHHHHHHHHhh---CCCeEEEEecCCcccc
Q psy14461         89 LYLDRIGDEGILLEEELKRQT---NQRRDELQERGSHLSF  125 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~---~~~~V~lie~~~~~~~  125 (535)
                      .+|+|||+|++|+.+|+.+..   .+.+|+||||++..++
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~~gg   41 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGG   41 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSSSCG
T ss_pred             CcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCCCcc
Confidence            478999999999999998888   8899999999876543

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=97.12  E-value=0.0019  Score=66.50  Aligned_cols=31  Identities=19%  Similarity=0.209  Sum_probs=29.3

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      ++|+|||||..|+-+|..|++.|.+|+|+++
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~   31 (421)
T 3nrn_A            1 MRAVVVGAGLGGLLAGAFLARNGHEIIVLEK   31 (421)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeC
Confidence            3699999999999999999999999999987

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=97.11  E-value=0.00012  Score=81.02  Aligned_cols=85  Identities=21%  Similarity=0.183  Sum_probs=64.0

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC---------cc--CcHHHHHHHHHhhhcC-CeEE-cceEEEEE
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL---------KH--FDQEMVRILLSSLTKA-GVSI-QCCVIEKV  306 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l---------~~--~~~~~~~~~~~~l~~~-gV~i-~~~~v~~i  306 (535)
                      .++|+|||||+.|+.+|..|+++|.+|+|+++ +.+.         |.  ...++...+.+.+++. ||++ .++.++  
T Consensus       391 ~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~--  468 (690)
T 3k30_A          391 DARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGRVTQESALPGLSAWGRVKEYREAVLAELPNVEIYRESPMT--  468 (690)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTHHHHHHTSTTCGGGGHHHHHHHHHHHTCTTEEEESSCCCC--
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCEeeeccCCCchhHHHHHHHHHHHHHHHcCCCEEEECCeec--
Confidence            46899999999999999999999999999998 6442         11  1245566677777776 8998 765321  


Q ss_pred             EEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCC
Q psy14461        307 ISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFD  343 (535)
Q Consensus       307 ~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~  343 (535)
                                 ..   +++  ++.+|.+++|+|..|.
T Consensus       469 -----------~~---~~~--~~~~d~lvlAtG~~~~  489 (690)
T 3k30_A          469 -----------GD---DIV--EFGFEHVITATGATWR  489 (690)
T ss_dssp             -----------HH---HHH--HTTCCEEEECCCEEEC
T ss_pred             -----------HH---HHh--hcCCCEEEEcCCCccc
Confidence                       11   233  5789999999999865

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=97.11  E-value=0.005  Score=66.21  Aligned_cols=38  Identities=8%  Similarity=0.038  Sum_probs=33.9

Q ss_pred             eEEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccc
Q psy14461         87 AVLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLS  124 (535)
Q Consensus        87 ~~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~  124 (535)
                      ..++|+|||+|++|+.+|+.+...+.+|+|+||.+..+
T Consensus       120 ~~~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~~~g  157 (566)
T 1qo8_A          120 ETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSG  157 (566)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCC
Confidence            35799999999999999999888889999999998653

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=97.07  E-value=0.0027  Score=69.73  Aligned_cols=30  Identities=17%  Similarity=0.242  Sum_probs=28.9

Q ss_pred             cEEEECCChHHHHHHHHHHh-----CCCcEEEEEc
Q psy14461        243 KTLVLGGSLMAVEIAATLNF-----LGVPVTLVYS  272 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~-----~g~~Vtlv~~  272 (535)
                      +|+|||||++|+-+|..|++     .|.+|+|+++
T Consensus        10 dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~   44 (665)
T 1pn0_A           10 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDK   44 (665)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECS
T ss_pred             cEEEECcCHHHHHHHHHHhccccccCCCCEEEEeC
Confidence            69999999999999999999     9999999987

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=97.07  E-value=0.0036  Score=63.47  Aligned_cols=35  Identities=6%  Similarity=-0.020  Sum_probs=31.8

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHL  123 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~  123 (535)
                      ++|+|||+|.+|+.+|+.+...+.+|+|+|++...
T Consensus         4 ~dvvIIGaG~~Gl~~A~~La~~G~~V~vie~~~~~   38 (389)
T 2gf3_A            4 FDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPP   38 (389)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSS
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence            68999999999999999998889999999998743

>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}

Probab=97.05  E-value=0.0013  Score=53.74  Aligned_cols=70  Identities=17%  Similarity=0.210  Sum_probs=49.3

Q ss_pred             hhHHHHhhhcCCcEEEEeC-----CCchhhHHHHHHHHHhcCCcceEEEEEeeCCccHHHHHHHHHhhCCCeE-EEEecC
Q psy14461         47 PPAYISRLSYENRILIFTH-----AVLREENARAERYLNARGDRFAVLYLDRIGDEGILLEEELKRQTNQRRD-ELQERG  120 (535)
Q Consensus        47 l~~~~~~~i~~~~v~v~~k-----~~cp~~~~~~k~~~~~~~~~~~~~~v~iiG~G~aG~~~al~~~~~~~~V-~lie~~  120 (535)
                      +...+..++..++|++|++     ++|| +|.+++.++.+.+.++..++|.  -. +. +...+....+..+| +|+-.+
T Consensus         6 ~~~~~~~~i~~~~vvvf~~g~~~~~~C~-~C~~~~~~L~~~~i~~~~vdi~--~~-~~-~~~~l~~~~g~~~vP~v~i~g   80 (105)
T 2yan_A            6 LEERLKVLTNKASVMLFMKGNKQEAKCG-FSKQILEILNSTGVEYETFDIL--ED-EE-VRQGLKAYSNWPTYPQLYVKG   80 (105)
T ss_dssp             HHHHHHHHHTSSSEEEEESBCSSSBCTT-HHHHHHHHHHHHTCCCEEEEGG--GC-HH-HHHHHHHHHTCCSSCEEEETT
T ss_pred             HHHHHHHHhccCCEEEEEecCCCCCCCc-cHHHHHHHHHHCCCCeEEEECC--CC-HH-HHHHHHHHHCCCCCCeEEECC
Confidence            4567788899999999999     9999 9999999999999876555443  22 33 66666555544443 344333


Q ss_pred             C
Q psy14461        121 S  121 (535)
Q Consensus       121 ~  121 (535)
                      .
T Consensus        81 ~   81 (105)
T 2yan_A           81 E   81 (105)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=97.05  E-value=0.002  Score=67.21  Aligned_cols=34  Identities=9%  Similarity=-0.132  Sum_probs=31.5

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSH  122 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~  122 (535)
                      ++|+|||+|++|+.+|+.+...+.+|+|+|+.+.
T Consensus         7 ~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~   40 (453)
T 3atr_A            7 YDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPW   40 (453)
T ss_dssp             CSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCG
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCC
Confidence            5789999999999999999888999999999875

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=97.04  E-value=0.0022  Score=64.95  Aligned_cols=33  Identities=9%  Similarity=-0.071  Sum_probs=30.4

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCC
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGS  121 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~  121 (535)
                      .+|+|||+|.+|+.+|+.+...+.+|+|+|++.
T Consensus         6 ~dVvIIGgGi~Gl~~A~~La~~G~~V~lle~~~   38 (382)
T 1y56_B            6 SEIVVIGGGIVGVTIAHELAKRGEEVTVIEKRF   38 (382)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            578999999999999999888899999999985

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=97.04  E-value=0.0031  Score=67.89  Aligned_cols=37  Identities=11%  Similarity=0.153  Sum_probs=33.5

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccc
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLS  124 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~  124 (535)
                      ..+|+|||+|++|+.+|+.+...+.+|+|+||.+..+
T Consensus       126 ~~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~~g  162 (571)
T 1y0p_A          126 TVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIG  162 (571)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCC
Confidence            4689999999999999999988899999999998654

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=97.04  E-value=0.0027  Score=67.76  Aligned_cols=35  Identities=17%  Similarity=-0.013  Sum_probs=32.3

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHL  123 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~  123 (535)
                      .+|+|||+|++|+.+|+.+...+.+|+|||+.+..
T Consensus         6 ~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~~   40 (535)
T 3ihg_A            6 VDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGL   40 (535)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSSC
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            68999999999999999999999999999998754

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=97.02  E-value=0.0026  Score=68.80  Aligned_cols=35  Identities=14%  Similarity=-0.015  Sum_probs=31.7

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHL  123 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~  123 (535)
                      .+|+|||+|++|+.+|+.+...+.+|+|+|+.+..
T Consensus        24 ~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~~~   58 (591)
T 3i3l_A           24 SKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFP   58 (591)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSS
T ss_pred             CCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCCCC
Confidence            68999999999999999888889999999998643

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=97.01  E-value=0.0026  Score=68.51  Aligned_cols=35  Identities=9%  Similarity=-0.118  Sum_probs=31.3

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHL  123 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~  123 (535)
                      ++|+|||+|++|+.+|+.+...+.+|+|||+.+..
T Consensus        50 ~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~~   84 (570)
T 3fmw_A           50 TDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEP   84 (570)
T ss_dssp             -CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCC
Confidence            67899999999999999998899999999998754

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=97.00  E-value=0.0014  Score=70.82  Aligned_cols=36  Identities=17%  Similarity=0.125  Sum_probs=31.7

Q ss_pred             EEEEeeCCccHHHHHHHHHhhC------CCeEEEEecCCccc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTN------QRRDELQERGSHLS  124 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~------~~~V~lie~~~~~~  124 (535)
                      ++|+|||+|++|+++|+.+...      +.+|+|+||.+.++
T Consensus        36 ~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g   77 (584)
T 2gmh_A           36 ADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIG   77 (584)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTT
T ss_pred             CCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCC
Confidence            5789999999999999988776      89999999987653

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=96.98  E-value=0.0047  Score=66.51  Aligned_cols=32  Identities=19%  Similarity=0.319  Sum_probs=30.0

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      .-+|+|||||.+|+-+|..|+++|.+|+|+++
T Consensus        32 ~~DVvVIGgGi~G~~~A~~La~rG~~V~LlE~   63 (571)
T 2rgh_A           32 ELDLLIIGGGITGAGVAVQAAASGIKTGLIEM   63 (571)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeC
Confidence            45799999999999999999999999999986

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=96.97  E-value=0.003  Score=71.22  Aligned_cols=31  Identities=16%  Similarity=0.360  Sum_probs=29.5

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCC-cEEEEEc
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGV-PVTLVYS  272 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~-~Vtlv~~  272 (535)
                      .+|+|||||.+|+-+|..|++.|. +|+|+++
T Consensus         5 ~dVvIIGgGi~Gls~A~~La~~G~~~V~vlE~   36 (830)
T 1pj5_A            5 PRIVIIGAGIVGTNLADELVTRGWNNITVLDQ   36 (830)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEECS
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCCcEEEEeC
Confidence            479999999999999999999998 9999998

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=96.96  E-value=0.0037  Score=62.48  Aligned_cols=36  Identities=17%  Similarity=0.036  Sum_probs=31.5

Q ss_pred             EEEEeeCCccHHHHHHHHHhhC--CCeEEEEecCCccc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTN--QRRDELQERGSHLS  124 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~--~~~V~lie~~~~~~  124 (535)
                      ++|+|||+|++|+.+|+.+...  +.+|+|+|+...++
T Consensus        80 ~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~G  117 (344)
T 3jsk_A           80 TDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPG  117 (344)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCC
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccC
Confidence            5789999999999999988765  89999999987654

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=96.96  E-value=0.0033  Score=66.74  Aligned_cols=35  Identities=23%  Similarity=-0.028  Sum_probs=32.1

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCc
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSH  122 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~  122 (535)
                      .++|+|||+|++|+.+|+.+...+.+|+|+|+.+.
T Consensus         7 ~~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~~   41 (512)
T 3e1t_A            7 VFDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAF   41 (512)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCS
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCCEEEEccCCC
Confidence            47899999999999999998888999999999874

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=96.95  E-value=0.0026  Score=66.91  Aligned_cols=30  Identities=20%  Similarity=0.354  Sum_probs=28.5

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      .|+|||+|..|+-+|..|++.|.+|+++++
T Consensus         1 DVvVIG~G~AGl~aA~~la~~G~~V~viek   30 (472)
T 2e5v_A            1 MIYIIGSGIAGLSAGVALRRAGKKVTLISK   30 (472)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeC
Confidence            489999999999999999999999999987

>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.94  E-value=0.0017  Score=55.41  Aligned_cols=67  Identities=16%  Similarity=0.211  Sum_probs=49.8

Q ss_pred             CCCCChhHHHHhhhcCCcEEEEeCCCchhhHHHHHHHHHhcCCcceEEEEEeeCCccHHHHHHHHHhhC
Q psy14461         42 PSFETPPAYISRLSYENRILIFTHAVLREENARAERYLNARGDRFAVLYLDRIGDEGILLEEELKRQTN  110 (535)
Q Consensus        42 p~~~~l~~~~~~~i~~~~v~v~~k~~cp~~~~~~k~~~~~~~~~~~~~~v~iiG~G~aG~~~al~~~~~  110 (535)
                      +.-......+..++..++|++|++.+|| +|.+++.++.+.+.++..++|+..-.++. +...+....+
T Consensus        11 ~~~~~~~~~~~~~i~~~~vvvf~~~~Cp-~C~~~~~~L~~~~i~~~~vdid~~~~~~~-~~~~l~~~~g   77 (130)
T 2cq9_A           11 NLATAPVNQIQETISDNCVVIFSKTSCS-YCTMAKKLFHDMNVNYKVVELDLLEYGNQ-FQDALYKMTG   77 (130)
T ss_dssp             CCSCCHHHHHHHHHHHSSEEEEECSSCS-HHHHHHHHHHHHTCCCEEEETTTSTTHHH-HHHHHHHHHS
T ss_pred             cccHHHHHHHHHHHcCCcEEEEEcCCCh-HHHHHHHHHHHcCCCcEEEECcCCcCcHH-HHHHHHHHhC
Confidence            3445667778888888999999999999 99999999999998877666654433333 4555554444

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=96.92  E-value=0.0037  Score=66.19  Aligned_cols=93  Identities=18%  Similarity=0.094  Sum_probs=64.8

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRFC  168 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  168 (535)
                      .+++|||+|..|+..|......+.+|+|+++.+.+      ++.+                      +. ++.       
T Consensus       177 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~------l~~~----------------------d~-~~~-------  220 (500)
T 1onf_A          177 KKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRI------LRKF----------------------DE-SVI-------  220 (500)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSS------CTTS----------------------CH-HHH-------
T ss_pred             CeEEEECChHHHHHHHHHHHHcCCeEEEEecCCcc------Cccc----------------------ch-hhH-------
Confidence            46899999999999988777788999999998754      1111                      11 111       


Q ss_pred             HHHHHHHHHHHHhcCcEEEEeE-EEEec---CC--EEEEce-eE-EEcceEEEeeCceecC
Q psy14461        169 IRAKNDSMRELKALGIDIVRTA-AAFTN---PH--TIKLSN-RS-VTGFNFLLAVERRCLP  221 (535)
Q Consensus       169 ~~~~~~~~~~~~~~gV~~~~g~-~~~~~---~~--~v~~~~-~~-~~~d~lViATGs~p~~  221 (535)
                          ..+.+.+++.||+++.+. +..+.   ..  .+.+.+ .+ +.+|.||+|+|.+|..
T Consensus       221 ----~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~D~vi~a~G~~p~~  277 (500)
T 1onf_A          221 ----NVLENDMKKNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCVGRSPDT  277 (500)
T ss_dssp             ----HHHHHHHHHTTCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECCCBCCTT
T ss_pred             ----HHHHHHHHhCCCEEEECCEEEEEEEcCCceEEEEECCCcEEEECCEEEECCCCCcCC
Confidence                122356778899998874 33222   12  455543 55 8999999999999976

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=96.92  E-value=0.005  Score=62.77  Aligned_cols=35  Identities=14%  Similarity=0.016  Sum_probs=31.4

Q ss_pred             EEEEEeeCCccHHHHHHHHHhh-CC-CeEEEEecCCc
Q psy14461         88 VLYLDRIGDEGILLEEELKRQT-NQ-RRDELQERGSH  122 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~-~~-~~V~lie~~~~  122 (535)
                      ..+|+|||+|.+|+.+|+.+.. .+ .+|+|+|++..
T Consensus        21 ~~dVvIIG~G~~Gl~~A~~La~~~G~~~V~vlE~~~~   57 (405)
T 2gag_B           21 SYDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGWL   57 (405)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHCCCCEEEECSSST
T ss_pred             cCCEEEECcCHHHHHHHHHHHHhcCCCcEEEEeCCCC
Confidence            4789999999999999998887 78 89999999873

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=96.92  E-value=0.0072  Score=63.94  Aligned_cols=105  Identities=15%  Similarity=0.054  Sum_probs=74.8

Q ss_pred             cEEEECCChHHHHHHHHHHhCC--------------CcEEEEEc-CcC-------Ccc----------------------
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLG--------------VPVTLVYS-RRL-------LKH----------------------  278 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g--------------~~Vtlv~~-~~~-------l~~----------------------  278 (535)
                      .|+|||+|+.|+-+|..|.+.|              ....++++ +.+       +|.                      
T Consensus        41 Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~~~~f~e~~~~f~Wh~g~~~p~~~~q~~fl~Dlvtl~~P~s~~s  120 (501)
T 4b63_A           41 DLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKICFLERQKQFAWHSGMLVPGSKMQISFIKDLATLRDPRSSFT  120 (501)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCCCEEEEESSSSCCSSGGGCCTTCBCSSCGGGSSSTTTCTTCTTS
T ss_pred             cEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCcceeeEeccCCCCcCCCCCCCCccccccchhhhccccCCCCccc
Confidence            5999999999999999988643              24567776 432       110                      


Q ss_pred             ----------------------CcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCC-------cEEEEEecCCCCCceE
Q psy14461        279 ----------------------FDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDG-------MKGVRGFHPESKEPFA  328 (535)
Q Consensus       279 ----------------------~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~-------~~~v~~~~~~~G~~~~  328 (535)
                                            ...++.++++...++.+..+ ++++|++++..+.+       ..+|+..+..+|+..+
T Consensus       121 f~~yl~~~~rl~~f~~~~~~~p~r~E~~~Yl~~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g~~~~  200 (501)
T 4b63_A          121 FLNYLHQKGRLIHFTNLSTFLPARLEFEDYMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGEISA  200 (501)
T ss_dssp             HHHHHHHHTCHHHHHTTCCSCCBHHHHHHHHHHHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTCCEEE
T ss_pred             hHHHHHHhCCccCCccccCCCCCHHHHHHHHHHHHHHcCCceEcceEEEeeccccccccccccceEEEEEecCCCceEEE
Confidence                                  01355666666666666678 89999999865322       3677776655677778


Q ss_pred             EEcCEEEEccCCCCCCCCC
Q psy14461        329 DVFKTVVNAMEKKFDFAAL  347 (535)
Q Consensus       329 ~~~D~vi~a~G~~p~~~~l  347 (535)
                      +.++.|++|+|..|+....
T Consensus       201 ~~ar~vVlatG~~P~iP~~  219 (501)
T 4b63_A          201 RRTRKVVIAIGGTAKMPSG  219 (501)
T ss_dssp             EEEEEEEECCCCEECCCTT
T ss_pred             EEeCEEEECcCCCCCCCCC
Confidence            9999999999998886643

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=96.90  E-value=0.0034  Score=69.13  Aligned_cols=35  Identities=11%  Similarity=-0.199  Sum_probs=32.0

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHL  123 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~  123 (535)
                      .+|+|||+|.+|+++|+.+...+.+|+|+|+...+
T Consensus       273 ~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~~~  307 (676)
T 3ps9_A          273 REAAIIGGGIASALLSLALLRRGWQVTLYCADEAP  307 (676)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence            68999999999999999999999999999997644

>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*

Probab=96.90  E-value=0.0016  Score=56.93  Aligned_cols=64  Identities=17%  Similarity=0.248  Sum_probs=48.9

Q ss_pred             CChhHHHHhhhcCCcEEEEeCCCchhhHHHHHHHHHhcCCcceEEEEEeeCCccHHHHHHHHHhhC
Q psy14461         45 ETPPAYISRLSYENRILIFTHAVLREENARAERYLNARGDRFAVLYLDRIGDEGILLEEELKRQTN  110 (535)
Q Consensus        45 ~~l~~~~~~~i~~~~v~v~~k~~cp~~~~~~k~~~~~~~~~~~~~~v~iiG~G~aG~~~al~~~~~  110 (535)
                      .+....+..++.+++|++|++++|| +|.+++.++.+.+.++..++|+..-.++. +...+....+
T Consensus        36 ~~~~~~~~~~i~~~~Vvvf~~~~Cp-~C~~~k~~L~~~~i~~~~vdId~~~~~~~-~~~~L~~~~g   99 (146)
T 2ht9_A           36 TAPVNQIQETISDNCVVIFSKTSCS-YCTMAKKLFHDMNVNYKVVELDLLEYGNQ-FQDALYKMTG   99 (146)
T ss_dssp             TCCHHHHHHHHHHCSEEEEECTTCH-HHHHHHHHHHHHTCCCEEEEGGGCTTHHH-HHHHHHHHHS
T ss_pred             hHHHHHHHHHhcCCCEEEEECCCCh-hHHHHHHHHHHcCCCeEEEECccCcCCHH-HHHHHHHHhC
Confidence            4567777888888999999999999 99999999999998887776655433333 5555655444

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=96.89  E-value=0.009  Score=64.54  Aligned_cols=51  Identities=18%  Similarity=0.070  Sum_probs=36.6

Q ss_pred             hhcCCeEE-cceEEEEEEEeCCCcE-EEEEecCCCCCceEEEcCEEEEccCCC
Q psy14461        291 LTKAGVSI-QCCVIEKVISSFDGMK-GVRGFHPESKEPFADVFKTVVNAMEKK  341 (535)
Q Consensus       291 l~~~gV~i-~~~~v~~i~~~~~~~~-~v~~~~~~~G~~~~~~~D~vi~a~G~~  341 (535)
                      +++.||++ .++.++++..++++++ .|...++.+|+...+.++.||+|+|..
T Consensus       153 ~~~~gv~i~~~~~v~~L~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGg~  205 (588)
T 2wdq_A          153 NLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGA  205 (588)
T ss_dssp             HHHTTCEEEETEEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEEECCCCC
T ss_pred             HHhCCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCeEEEEEcCEEEECCCCC
Confidence            34568999 9999999986423444 355443246766679999999999964

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=96.88  E-value=0.0065  Score=65.10  Aligned_cols=32  Identities=25%  Similarity=0.242  Sum_probs=30.2

Q ss_pred             CCcEEEECCChHHHHHHHHHHh---CCCcEEEEEc
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNF---LGVPVTLVYS  272 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~---~g~~Vtlv~~  272 (535)
                      ..+|+|||||..|+-+|..|++   .|.+|+|+++
T Consensus        25 ~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~   59 (550)
T 2e4g_A           25 IDKILIVGGGTAGWMAASYLGKALQGTADITLLQA   59 (550)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEEC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeC
Confidence            4689999999999999999999   9999999997

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=96.87  E-value=0.00034  Score=77.83  Aligned_cols=85  Identities=15%  Similarity=0.047  Sum_probs=56.2

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc---------C--cHHHHHHHHHhhhc------CCeEE-cce
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH---------F--DQEMVRILLSSLTK------AGVSI-QCC  301 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~---------~--~~~~~~~~~~~l~~------~gV~i-~~~  301 (535)
                      .++|+|||||+.|+.+|..|+++|.+|+|+++ +.+...         .  -..+.+.+.+.++.      .++++ .+.
T Consensus       389 ~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~~GG~~~~~~~~pg~~~~~~~~~~~~~~i~~~~~~~~~~v~i~~~~  468 (729)
T 1o94_A          389 KDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAALPGLGEWSYHRDYRETQITKLLKKNKESQLALGQK  468 (729)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHHTTSTTCGGGHHHHHHHHHHHHHHHHHSTTCEEECSCC
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCeeeecccCCChHHHHHHHHHHHHHHHHhhcccCCceEEEeCe
Confidence            46899999999999999999999999999998 654221         1  12223333232222      25555 432


Q ss_pred             EEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCC
Q psy14461        302 VIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFD  343 (535)
Q Consensus       302 ~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~  343 (535)
                      .             ++++   ++.  .+.+|.|++|||..|.
T Consensus       469 ~-------------v~~~---~~~--~~~~d~vviAtG~~~~  492 (729)
T 1o94_A          469 P-------------MTAD---DVL--QYGADKVIIATGARWN  492 (729)
T ss_dssp             C-------------CCHH---HHH--TSCCSEEEECCCEEEC
T ss_pred             E-------------Eehh---hcc--ccCCCEEEEcCCCCcc
Confidence            1             2221   333  4789999999999864

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=96.86  E-value=0.0024  Score=65.53  Aligned_cols=35  Identities=17%  Similarity=0.041  Sum_probs=31.3

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhC--CCeEEEEecCCc
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTN--QRRDELQERGSH  122 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~--~~~V~lie~~~~  122 (535)
                      ..+|+|||+|.+|+++|+.+...  +.+|+|+|++..
T Consensus        36 ~~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~~   72 (405)
T 3c4n_A           36 AFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGL   72 (405)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSCS
T ss_pred             cCCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence            47899999999999999988877  899999999763

>2jad_A Yellow fluorescent protein glutaredoxin fusion protein; electron transport, redox- active center, yeast, GRX1P, transport; HET: PIA; 2.7A {Aequorea victoria}

Probab=96.85  E-value=0.0015  Score=65.34  Aligned_cols=66  Identities=12%  Similarity=0.049  Sum_probs=49.9

Q ss_pred             hhHHHHhhhcCCcEEEEeCCCchhhHHHHHH-HHHhcCCcceEEEEE---eeCCccHHHHHHHHHhhCCCeE
Q psy14461         47 PPAYISRLSYENRILIFTHAVLREENARAER-YLNARGDRFAVLYLD---RIGDEGILLEEELKRQTNQRRD  114 (535)
Q Consensus        47 l~~~~~~~i~~~~v~v~~k~~cp~~~~~~k~-~~~~~~~~~~~~~v~---iiG~G~aG~~~al~~~~~~~~V  114 (535)
                      +...+..+++.++|++|++++|| +|.++++ ++.+.+.++..++|+   .+..++. +..++....+..+|
T Consensus       250 ~~~~V~~lI~~~~VvVYsk~~CP-yC~~Ak~~LL~~~gV~y~eidVlEld~~~~~~e-~~~~L~~~tG~~TV  319 (362)
T 2jad_A          250 TIKHVKDLIAENEIFVASKTYCP-YSHAALNTLFEKLKVPRSKVLVLQLNDMKEGAD-IQAALYEINGQRTV  319 (362)
T ss_dssp             HHHHHHHHHHTCSEEEEECTTCH-HHHHHHHHHHTTTCCCTTTEEEEEGGGSTTHHH-HHHHHHHHHCCCSS
T ss_pred             HHHHHHHHhccCCEEEEEcCCCc-chHHHHHHHHHHcCCCcceEEEEEeccccCCHH-HHHHHHHHHCCCCc
Confidence            56788899999999999999999 9999997 788888776544443   2334444 77777776655444

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=96.84  E-value=0.0055  Score=64.82  Aligned_cols=36  Identities=8%  Similarity=-0.198  Sum_probs=32.6

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcc
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHL  123 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~  123 (535)
                      .++|+|||+|++|+.+|+.+...+.+|+|+|+.+..
T Consensus        12 ~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~   47 (499)
T 2qa2_A           12 DASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQR   47 (499)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence            378999999999999999998899999999998754

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=96.80  E-value=0.0004  Score=70.80  Aligned_cols=34  Identities=21%  Similarity=0.180  Sum_probs=30.8

Q ss_pred             CcEEEECCChHHHHHHHHHHhC--CCcEEEEEc-CcC
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFL--GVPVTLVYS-RRL  275 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~--g~~Vtlv~~-~~~  275 (535)
                      .+|+|||||+.|+.+|..|++.  |.+|+|+++ +.+
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~   37 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQ   37 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCC
Confidence            3699999999999999999999  999999998 543

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*

Probab=96.80  E-value=0.0021  Score=52.24  Aligned_cols=60  Identities=10%  Similarity=0.211  Sum_probs=43.7

Q ss_pred             HHHHhhhcCCcEEEEeCCCchhhHHHHHHHHHhcCCc---ceEEEEEeeCCccHHHHHHHHHhhC
Q psy14461         49 AYISRLSYENRILIFTHAVLREENARAERYLNARGDR---FAVLYLDRIGDEGILLEEELKRQTN  110 (535)
Q Consensus        49 ~~~~~~i~~~~v~v~~k~~cp~~~~~~k~~~~~~~~~---~~~~~v~iiG~G~aG~~~al~~~~~  110 (535)
                      ..+..++.+++|++|++++|| +|.+++.++.+.+.+   +..++++.-..++. +...+....+
T Consensus         3 ~~~~~~i~~~~v~~f~~~~C~-~C~~~~~~L~~~~~~~~~~~~vdi~~~~~~~~-~~~~l~~~~g   65 (105)
T 1kte_A            3 AFVNSKIQPGKVVVFIKPTCP-FCRKTQELLSQLPFKEGLLEFVDITATSDTNE-IQDYLQQLTG   65 (105)
T ss_dssp             HHHHHHCCTTCEEEEECSSCH-HHHHHHHHHHHSCBCTTSEEEEEGGGSTTHHH-HHHHHHHHHS
T ss_pred             hHHHhhcccCCEEEEEcCCCH-hHHHHHHHHHHcCCCCCccEEEEccCCCCHHH-HHHHHHHHhC
Confidence            456778889999999999999 999999999998877   65555544333333 4555555444

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=96.79  E-value=0.0034  Score=67.11  Aligned_cols=30  Identities=17%  Similarity=0.233  Sum_probs=28.3

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      -.|+|||+|..|+-+|..|++ |.+|+|+++
T Consensus         9 ~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk   38 (540)
T 1chu_A            9 CDVLIIGSGAAGLSLALRLAD-QHQVIVLSK   38 (540)
T ss_dssp             CSEEEECCSHHHHHHHHHHTT-TSCEEEECS
T ss_pred             CCEEEECccHHHHHHHHHHhc-CCcEEEEEC
Confidence            369999999999999999999 999999998

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=96.79  E-value=0.01  Score=63.97  Aligned_cols=37  Identities=16%  Similarity=0.095  Sum_probs=33.1

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccc
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLS  124 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~  124 (535)
                      ..+|+|||+|++|+.+|+.+...+.+|+|+|+.+.++
T Consensus       126 ~~~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~~~~~  162 (572)
T 1d4d_A          126 TTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPG  162 (572)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHSSSCCEEEECSSSSSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence            4678999999999999999988899999999998654

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=96.71  E-value=0.011  Score=64.31  Aligned_cols=50  Identities=14%  Similarity=-0.087  Sum_probs=36.3

Q ss_pred             hcCCeEE-cceEEEEEEEeCCCcEE-EEEecCCCCCceEEEcCEEEEccCCCC
Q psy14461        292 TKAGVSI-QCCVIEKVISSFDGMKG-VRGFHPESKEPFADVFKTVVNAMEKKF  342 (535)
Q Consensus       292 ~~~gV~i-~~~~v~~i~~~~~~~~~-v~~~~~~~G~~~~~~~D~vi~a~G~~p  342 (535)
                      .+.||++ .++.+.++..+ ++++. |...+..+|+...+.++.||+|+|-..
T Consensus       166 ~~~gv~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~  217 (621)
T 2h88_A          166 LRYDTSYFVEYFALDLLME-NGECRGVIALCIEDGTIHRFRAKNTVIATGGYG  217 (621)
T ss_dssp             TTSCCEEEETEEEEEEEEE-TTEEEEEEEEETTTCCEEEEEEEEEEECCCCCG
T ss_pred             HhCCCEEEEceEEEEEEEE-CCEEEEEEEEEcCCCcEEEEEcCeEEECCCccc
Confidence            4568999 99999999765 45543 444322367766799999999999644

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=96.69  E-value=0.008  Score=63.60  Aligned_cols=36  Identities=8%  Similarity=-0.201  Sum_probs=31.9

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcc
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHL  123 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~  123 (535)
                      .++|+|||+|++|+.+|+.+...+.+|+|+|+.+..
T Consensus        11 ~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~   46 (500)
T 2qa1_A           11 DAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVER   46 (500)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            367899999999999999998899999999998754

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=96.68  E-value=0.0059  Score=62.64  Aligned_cols=35  Identities=17%  Similarity=-0.041  Sum_probs=31.7

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCe-EEEEecCCcc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRR-DELQERGSHL  123 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~-V~lie~~~~~  123 (535)
                      ++|+|||+|++|+.+|+.+...+.+ |+|+|+.+..
T Consensus         5 ~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~   40 (410)
T 3c96_A            5 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEI   40 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCc
Confidence            5789999999999999998888999 9999998754

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=96.68  E-value=0.0061  Score=64.90  Aligned_cols=32  Identities=22%  Similarity=0.247  Sum_probs=30.1

Q ss_pred             CCcEEEECCChHHHHHHHHHHh------------CCCcEEEEEc
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNF------------LGVPVTLVYS  272 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~------------~g~~Vtlv~~  272 (535)
                      ..+|+|||||..|+-+|..|++            .|.+|+|+++
T Consensus         7 ~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G~~V~liE~   50 (526)
T 2pyx_A            7 ITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIES   50 (526)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSCSCEEEEEEC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhhccccccccCCCCCeEEEEeC
Confidence            4689999999999999999999            8999999997

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=96.67  E-value=0.005  Score=62.89  Aligned_cols=34  Identities=15%  Similarity=0.065  Sum_probs=31.3

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSH  122 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~  122 (535)
                      .+|+|||+|++|+.+|+.+...+.+|+|+|+.+.
T Consensus         6 ~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~   39 (397)
T 2vou_A            6 DRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ   39 (397)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            4789999999999999999888999999999875

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=96.66  E-value=0.0071  Score=64.57  Aligned_cols=92  Identities=13%  Similarity=-0.056  Sum_probs=63.4

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRFC  168 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  168 (535)
                      .+++|||+|..|+..|-.....+.+|||+++...+       +.+                      |.+ +        
T Consensus       224 ~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~~~L-------~~~----------------------D~e-i--------  265 (542)
T 4b1b_A          224 GKTLVVGASYVALECSGFLNSLGYDVTVAVRSIVL-------RGF----------------------DQQ-C--------  265 (542)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEEESSCSS-------TTS----------------------CHH-H--------
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCeEEEecccccc-------ccc----------------------chh-H--------
Confidence            46799999999999887777778899999876532       211                      111 1        


Q ss_pred             HHHHHHHHHHHHhcCcEEEEeEEE-E--ecCCEEEE--ce-eEEEcceEEEeeCceecC
Q psy14461        169 IRAKNDSMRELKALGIDIVRTAAA-F--TNPHTIKL--SN-RSVTGFNFLLAVERRCLP  221 (535)
Q Consensus       169 ~~~~~~~~~~~~~~gV~~~~g~~~-~--~~~~~v~~--~~-~~~~~d~lViATGs~p~~  221 (535)
                         ...+...+++.||+++.+... .  .....+.+  .+ .++.+|.|++|+|-+|+.
T Consensus       266 ---~~~l~~~l~~~gi~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~D~vLvAvGR~Pnt  321 (542)
T 4b1b_A          266 ---AVKVKLYMEEQGVMFKNGILPKKLTKMDDKILVEFSDKTSELYDTVLYAIGRKGDI  321 (542)
T ss_dssp             ---HHHHHHHHHHTTCEEEETCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEESC
T ss_pred             ---HHHHHHHHHhhcceeecceEEEEEEecCCeEEEEEcCCCeEEEEEEEEcccccCCc
Confidence               122346678899999887522 1  22333333  33 678899999999999987

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=96.64  E-value=0.0068  Score=64.70  Aligned_cols=34  Identities=12%  Similarity=-0.095  Sum_probs=30.6

Q ss_pred             EEEEeeCCccHHHHHHHHHhh---CCCeEEEEecCCc
Q psy14461         89 LYLDRIGDEGILLEEELKRQT---NQRRDELQERGSH  122 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~---~~~~V~lie~~~~  122 (535)
                      .+|+|||+|++|+.+|+.+..   .+.+|+|+|+...
T Consensus         6 ~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~~   42 (538)
T 2aqj_A            6 KNIVIVGGGTAGWMAASYLVRALQQQANITLIESAAI   42 (538)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCCSSCEEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence            579999999999999998888   8899999999763

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=96.60  E-value=0.0066  Score=61.78  Aligned_cols=34  Identities=15%  Similarity=-0.037  Sum_probs=30.7

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSH  122 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~  122 (535)
                      .+|+|||+|++|+.+|+.+...+.+|+|+|+.+.
T Consensus         3 ~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   36 (394)
T 1k0i_A            3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTP   36 (394)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred             ccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            4689999999999999988888999999999874

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=96.58  E-value=0.01  Score=62.85  Aligned_cols=31  Identities=29%  Similarity=0.292  Sum_probs=29.5

Q ss_pred             CcEEEECCChHHHHHHHHHHh---CCCcEEEEEc
Q psy14461        242 GKTLVLGGSLMAVEIAATLNF---LGVPVTLVYS  272 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~---~g~~Vtlv~~  272 (535)
                      .+|+|||||.+|+-+|..|++   .|.+|+|+++
T Consensus         3 ~dVvIVGgG~aGl~~A~~La~~~~~G~~V~lvE~   36 (511)
T 2weu_A            3 RSVVIVGGGTAGWMTASYLKAAFDDRIDVTLVES   36 (511)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHHHGGGSEEEEEEC
T ss_pred             ceEEEECCCHHHHHHHHHHHhhcCCCCEEEEEec
Confidence            579999999999999999999   9999999987

>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B

Probab=96.58  E-value=0.0029  Score=52.51  Aligned_cols=62  Identities=15%  Similarity=0.197  Sum_probs=44.9

Q ss_pred             hhHHHHhhhcCCcEEEEeCCCchhhHHHHHHHHHhcCCc---ceEEEEEeeCCccHHHHHHHHHhhC
Q psy14461         47 PPAYISRLSYENRILIFTHAVLREENARAERYLNARGDR---FAVLYLDRIGDEGILLEEELKRQTN  110 (535)
Q Consensus        47 l~~~~~~~i~~~~v~v~~k~~cp~~~~~~k~~~~~~~~~---~~~~~v~iiG~G~aG~~~al~~~~~  110 (535)
                      .+..+..++..++|++|++++|| +|.+++.++.+.+.+   +..++|..-..|.. ....+....+
T Consensus         8 ~~~~~~~~i~~~~vv~f~~~~Cp-~C~~~~~~L~~~~~~~~~~~~vdi~~~~~~~~-~~~~l~~~~g   72 (114)
T 2hze_A            8 AEEFVQQRLANNKVTIFVKYTCP-FCRNALDILNKFSFKRGAYEIVDIKEFKPENE-LRDYFEQITG   72 (114)
T ss_dssp             HHHHHHTTCCTTCEEEEECTTCH-HHHHHHHHHTTSCBCTTSEEEEEGGGSSSHHH-HHHHHHHHHS
T ss_pred             HHHHHHHHhccCCEEEEEeCCCh-hHHHHHHHHHHcCCCcCceEEEEccCCCChHH-HHHHHHHHhC
Confidence            45678888999999999999999 999999999988877   65555443322223 4455554443

>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A

Probab=96.58  E-value=0.0051  Score=48.24  Aligned_cols=52  Identities=12%  Similarity=0.075  Sum_probs=38.4

Q ss_pred             cEEEEeCC----CchhhHHHHHHHHHhcCCcceEEEEEeeC--CccHHHHHHHHHhhCCC
Q psy14461         59 RILIFTHA----VLREENARAERYLNARGDRFAVLYLDRIG--DEGILLEEELKRQTNQR  112 (535)
Q Consensus        59 ~v~v~~k~----~cp~~~~~~k~~~~~~~~~~~~~~v~iiG--~G~aG~~~al~~~~~~~  112 (535)
                      +|.+|+++    +|| +|.+++.++.+.+.+++.++|....  ..+. ...++....+..
T Consensus         1 ~v~iY~~~~~~~~Cp-~C~~ak~~L~~~gi~y~~idI~~~~~~~~~~-~~~~l~~~~g~~   58 (87)
T 1aba_A            1 MFKVYGYDSNIHKCG-PCDNAKRLLTVKKQPFEFINIMPEKGVFDDE-KIAELLTKLGRD   58 (87)
T ss_dssp             CEEEEECCTTTSCCH-HHHHHHHHHHHTTCCEEEEESCSBTTBCCHH-HHHHHHHHHTCS
T ss_pred             CEEEEEeCCCCCcCc-cHHHHHHHHHHcCCCEEEEEeeccccccCHH-HHHHHHHHhCCC
Confidence            37899999    999 9999999999999888776665332  2344 666676555444

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=96.56  E-value=0.0017  Score=61.16  Aligned_cols=33  Identities=21%  Similarity=0.279  Sum_probs=30.8

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcC
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRL  275 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~  275 (535)
                      .|+|||+|++|+-+|..|++.|.+|+|+++ +.+
T Consensus         4 dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~   37 (336)
T 3kkj_A            4 PIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGS   37 (336)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence            599999999999999999999999999998 654

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=96.53  E-value=0.0021  Score=65.01  Aligned_cols=37  Identities=5%  Similarity=-0.093  Sum_probs=33.5

Q ss_pred             eEEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcc
Q psy14461         87 AVLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHL  123 (535)
Q Consensus        87 ~~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~  123 (535)
                      +-+||+|||+||+|+.+|+.+...+.+|+|+||.+.+
T Consensus         3 e~yDViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~   39 (397)
T 3oz2_A            3 ETYDVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEI   39 (397)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSST
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            3579999999999999999999999999999998754

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=96.51  E-value=0.015  Score=63.67  Aligned_cols=30  Identities=23%  Similarity=0.408  Sum_probs=28.6

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      .|+|||+|..|+-+|..+++.|.+|+++++
T Consensus         7 DVvVIGgG~AGL~AAl~aae~G~~V~vlEK   36 (660)
T 2bs2_A            7 DSLVIGGGLAGLRAAVATQQKGLSTIVLSL   36 (660)
T ss_dssp             SEEEECCSHHHHHHHHHHHTTTCCEEEECS
T ss_pred             cEEEECchHHHHHHHHHHHHCCCcEEEEec
Confidence            699999999999999999999999999987

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=96.49  E-value=0.011  Score=62.24  Aligned_cols=92  Identities=12%  Similarity=-0.043  Sum_probs=61.5

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRFC  168 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  168 (535)
                      .+++|||+|..|+..|......+.+|+++++.+.+      ++..                      +. ++.+      
T Consensus       175 k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~------l~~~----------------------d~-~~~~------  219 (492)
T 3ic9_A          175 KSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSV------ANLQ----------------------DE-EMKR------  219 (492)
T ss_dssp             SEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCC------TTCC----------------------CH-HHHH------
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcc------cccC----------------------CH-HHHH------
Confidence            46799999999999998887888999999998754      1111                      11 1111      


Q ss_pred             HHHHHHHHHHHHhcCcEEEEeE-EEEe--cCC--EEEE---ce--eEEEcceEEEeeCceecC
Q psy14461        169 IRAKNDSMRELKALGIDIVRTA-AAFT--NPH--TIKL---SN--RSVTGFNFLLAVERRCLP  221 (535)
Q Consensus       169 ~~~~~~~~~~~~~~gV~~~~g~-~~~~--~~~--~v~~---~~--~~~~~d~lViATGs~p~~  221 (535)
                           .+.+.+++. |+++.+. +..+  ++.  .+.+   ++  .++.+|.||+|||.+|..
T Consensus       220 -----~l~~~l~~~-V~i~~~~~v~~i~~~~~~v~v~~~~~~G~~~~i~~D~Vi~a~G~~p~~  276 (492)
T 3ic9_A          220 -----YAEKTFNEE-FYFDAKARVISTIEKEDAVEVIYFDKSGQKTTESFQYVLAATGRKANV  276 (492)
T ss_dssp             -----HHHHHHHTT-SEEETTCEEEEEEECSSSEEEEEECTTCCEEEEEESEEEECSCCEESC
T ss_pred             -----HHHHHHhhC-cEEEECCEEEEEEEcCCEEEEEEEeCCCceEEEECCEEEEeeCCccCC
Confidence                 122445555 8887653 2222  222  2444   23  679999999999999987

>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0

Probab=96.41  E-value=0.003  Score=51.11  Aligned_cols=49  Identities=22%  Similarity=0.277  Sum_probs=36.7

Q ss_pred             cCCcEEEEeCCCchhhHHHHHHHHHhcCCcceEEEEEeeCCccHHHHHHHHHhh
Q psy14461         56 YENRILIFTHAVLREENARAERYLNARGDRFAVLYLDRIGDEGILLEEELKRQT  109 (535)
Q Consensus        56 ~~~~v~v~~k~~cp~~~~~~k~~~~~~~~~~~~~~v~iiG~G~aG~~~al~~~~  109 (535)
                      ..++|.+|++++|| +|.+++.++.+.+.++..++|..  . +. ....+....
T Consensus        14 ~~~~v~vy~~~~Cp-~C~~ak~~L~~~~i~y~~idI~~--~-~~-~~~~l~~~~   62 (99)
T 3qmx_A           14 VSAKIEIYTWSTCP-FCMRALALLKRKGVEFQEYCIDG--D-NE-AREAMAARA   62 (99)
T ss_dssp             CCCCEEEEECTTCH-HHHHHHHHHHHHTCCCEEEECTT--C-HH-HHHHHHHHT
T ss_pred             CCCCEEEEEcCCCh-hHHHHHHHHHHCCCCCEEEEcCC--C-HH-HHHHHHHHh
Confidence            45689999999999 99999999999998876555432  2 33 555565544

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=96.22  E-value=0.017  Score=62.98  Aligned_cols=36  Identities=11%  Similarity=-0.067  Sum_probs=32.5

Q ss_pred             EEEEEeeCCccHHHHHHHHHhh-CCCeEEEEecCCcc
Q psy14461         88 VLYLDRIGDEGILLEEELKRQT-NQRRDELQERGSHL  123 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~-~~~~V~lie~~~~~  123 (535)
                      ..+|+|||+|++|+.+|+.+.. .+.+|+|+|+.+..
T Consensus        32 ~~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~~   68 (639)
T 2dkh_A           32 QVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGP   68 (639)
T ss_dssp             EEEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSSC
T ss_pred             CCcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence            4789999999999999999988 89999999998753

>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}

Probab=95.92  E-value=0.0056  Score=49.74  Aligned_cols=37  Identities=16%  Similarity=0.373  Sum_probs=32.0

Q ss_pred             cCCcEEEEeCCCchhhHHHHHHHHHhcCCcceEEEEEe
Q psy14461         56 YENRILIFTHAVLREENARAERYLNARGDRFAVLYLDR   93 (535)
Q Consensus        56 ~~~~v~v~~k~~cp~~~~~~k~~~~~~~~~~~~~~v~i   93 (535)
                      .+++|.+|++++|| +|.+++.++.+.+.+++.++|..
T Consensus        20 ~~~~v~ly~~~~Cp-~C~~ak~~L~~~~i~y~~vdI~~   56 (103)
T 3nzn_A           20 DRGKVIMYGLSTCV-WCKKTKKLLTDLGVDFDYVYVDR   56 (103)
T ss_dssp             CCSCEEEEECSSCH-HHHHHHHHHHHHTBCEEEEEGGG
T ss_pred             CCCeEEEEcCCCCc-hHHHHHHHHHHcCCCcEEEEeec
Confidence            45789999999999 99999999999998877666654

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=95.91  E-value=0.006  Score=62.07  Aligned_cols=36  Identities=17%  Similarity=-0.042  Sum_probs=32.4

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLS  124 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~  124 (535)
                      ++|+|||+|++|+.+|+.+...+.+|+||||.+...
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~~~   37 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSAAS   37 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCCCC
Confidence            578999999999999999999999999999987543

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=95.89  E-value=0.0069  Score=63.89  Aligned_cols=51  Identities=16%  Similarity=0.143  Sum_probs=40.6

Q ss_pred             HHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccC
Q psy14461        281 QEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAME  339 (535)
Q Consensus       281 ~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G  339 (535)
                      ..+.+.+.+.+.+.|+++ +++.|++|..+ ++  .+++   .+|+  ++.+|.||.++.
T Consensus       222 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~-~~--~v~~---~~G~--~~~ad~vI~t~P  273 (513)
T 4gde_A          222 GGIWIAVANTLPKEKTRFGEKGKVTKVNAN-NK--TVTL---QDGT--TIGYKKLVSTMA  273 (513)
T ss_dssp             HHHHHHHHHTSCGGGEEESGGGCEEEEETT-TT--EEEE---TTSC--EEEEEEEEECSC
T ss_pred             HHHHHHHHHHHHhcCeeeecceEEEEEEcc-CC--EEEE---cCCC--EEECCEEEECCC
Confidence            456777888888999999 99999999864 33  3555   3788  899999998875

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=95.86  E-value=0.032  Score=60.85  Aligned_cols=31  Identities=29%  Similarity=0.337  Sum_probs=28.6

Q ss_pred             CcEEEECCChHHHHHHHHHH---h-CCCcEEEEEc
Q psy14461        242 GKTLVLGGSLMAVEIAATLN---F-LGVPVTLVYS  272 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~---~-~g~~Vtlv~~  272 (535)
                      -.|+|||+|..|+-+|..++   + .|.+|+|+++
T Consensus        23 ~DVvVIG~G~AGl~AAl~aa~~~~~~G~~V~vlEK   57 (643)
T 1jnr_A           23 TDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEK   57 (643)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECS
T ss_pred             CCEEEECcCHHHHHHHHHHhhhhhhCCCeEEEEeC
Confidence            36999999999999999999   6 8999999987

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=95.83  E-value=0.034  Score=62.57  Aligned_cols=34  Identities=12%  Similarity=-0.061  Sum_probs=30.7

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCC-eEEEEecCCc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQR-RDELQERGSH  122 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~-~V~lie~~~~  122 (535)
                      .+|+|||+|.+|+++|+.+...+. +|+|+|++..
T Consensus         5 ~dVvIIGgGi~Gls~A~~La~~G~~~V~vlE~~~~   39 (830)
T 1pj5_A            5 PRIVIIGAGIVGTNLADELVTRGWNNITVLDQGPL   39 (830)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSCT
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCCcEEEEeCCCC
Confidence            478999999999999999888887 9999999874

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=95.67  E-value=0.036  Score=61.70  Aligned_cols=34  Identities=21%  Similarity=0.394  Sum_probs=31.1

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-Cc
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RR  274 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~  274 (535)
                      ..+|+|||+|.+|+-+|..|++.|.+|+++++ +.
T Consensus       336 ~~~v~viG~G~~Gl~aA~~l~~~g~~v~v~E~~~~  370 (776)
T 4gut_A          336 NKSVIIIGAGPAGLAAARQLHNFGIKVTVLEAKDR  370 (776)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCcEEEEecccc
Confidence            36899999999999999999999999999987 53

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=95.49  E-value=0.01  Score=60.95  Aligned_cols=56  Identities=7%  Similarity=0.027  Sum_probs=44.9

Q ss_pred             cHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCC
Q psy14461        280 DQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFD  343 (535)
Q Consensus       280 ~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~  343 (535)
                      ...+.+.+.+.+++.|+++ +++.|++|..+ ++++ |.    .+|+  ++.+|.||+|+|....
T Consensus       188 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~-~~~v-V~----~~g~--~~~ad~Vv~a~~~~~~  244 (421)
T 3nrn_A          188 CKAVIDELERIIMENKGKILTRKEVVEINIE-EKKV-YT----RDNE--EYSFDVAISNVGVRET  244 (421)
T ss_dssp             HHHHHHHHHHHHHTTTCEEESSCCEEEEETT-TTEE-EE----TTCC--EEECSEEEECSCHHHH
T ss_pred             HHHHHHHHHHHHHHCCCEEEcCCeEEEEEEE-CCEE-EE----eCCc--EEEeCEEEECCCHHHH
Confidence            3677888888999999999 99999999875 4555 42    2676  7999999999997543

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=95.46  E-value=0.025  Score=61.77  Aligned_cols=31  Identities=19%  Similarity=0.133  Sum_probs=28.7

Q ss_pred             CcEEEECCChHHHHHHHHHHhC------CCcEEEEEc
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFL------GVPVTLVYS  272 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~------g~~Vtlv~~  272 (535)
                      -.|+|||+|..|+-+|..|++.      |.+|+|+++
T Consensus        23 ~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK   59 (662)
T 3gyx_A           23 VDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDK   59 (662)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECS
T ss_pred             cCEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEe
Confidence            3699999999999999999997      999999987

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=95.46  E-value=0.011  Score=60.78  Aligned_cols=36  Identities=17%  Similarity=-0.067  Sum_probs=32.4

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLS  124 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~  124 (535)
                      ++|+|||+|.+|+++|..+...+.+|+|+|+++.++
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~G   36 (425)
T 3ka7_A            1 MKTVVIGAGLGGLLSAARLSKAGHEVEVFERLPITG   36 (425)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSB
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCceEEEeCCCCCC
Confidence            378999999999999999988899999999987654

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=95.36  E-value=0.0082  Score=63.21  Aligned_cols=36  Identities=17%  Similarity=-0.117  Sum_probs=29.6

Q ss_pred             EEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccc
Q psy14461         90 YLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSF  125 (535)
Q Consensus        90 ~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~  125 (535)
                      +|+|||+|.+|++||..+...+.+|+|+|+.+.+++
T Consensus         3 ~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~~~GG   38 (501)
T 4dgk_A            3 PTTVIGAGFGGLALAIRLQAAGIPVLLLEQRDKPGG   38 (501)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCCEEEECCC-----
T ss_pred             CEEEECCcHHHHHHHHHHHHCCCcEEEEccCCCCCC
Confidence            579999999999999999999999999999986654

>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A

Probab=95.26  E-value=0.035  Score=43.92  Aligned_cols=48  Identities=13%  Similarity=0.362  Sum_probs=35.8

Q ss_pred             CcEEEEeCCCchhhH------HHHHHHHHhcCCcceEEEEEeeCCccHHHHHHHHHhhC
Q psy14461         58 NRILIFTHAVLREEN------ARAERYLNARGDRFAVLYLDRIGDEGILLEEELKRQTN  110 (535)
Q Consensus        58 ~~v~v~~k~~cp~~~------~~~k~~~~~~~~~~~~~~v~iiG~G~aG~~~al~~~~~  110 (535)
                      .+|++|+++.|| +|      .++++++.+.+.+++.++|.  .. +. ....+....+
T Consensus         2 ~~v~ly~~~~C~-~c~~~~~~~~ak~~L~~~~i~~~~~di~--~~-~~-~~~~l~~~~g   55 (93)
T 1t1v_A            2 SGLRVYSTSVTG-SREIKSQQSEVTRILDGKRIQYQLVDIS--QD-NA-LRDEMRTLAG   55 (93)
T ss_dssp             CCEEEEECSSCS-CHHHHHHHHHHHHHHHHTTCCCEEEETT--SC-HH-HHHHHHHHTT
T ss_pred             CCEEEEEcCCCC-CchhhHHHHHHHHHHHHCCCceEEEECC--CC-HH-HHHHHHHHhC
Confidence            368999999999 99      89999999999887655543  22 33 5666666544

>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*

Probab=95.16  E-value=0.018  Score=44.79  Aligned_cols=36  Identities=14%  Similarity=0.207  Sum_probs=31.3

Q ss_pred             cEEEEeCCCchhhHHHHHHHHHhcCCcceEEEEEeeC
Q psy14461         59 RILIFTHAVLREENARAERYLNARGDRFAVLYLDRIG   95 (535)
Q Consensus        59 ~v~v~~k~~cp~~~~~~k~~~~~~~~~~~~~~v~iiG   95 (535)
                      +|.+|++++|| +|.+++.++.+.+.+++.+++++.-
T Consensus         5 ~v~ly~~~~Cp-~C~~~~~~L~~~~i~~~~~~vd~~~   40 (89)
T 3msz_A            5 KVKIYTRNGCP-YCVWAKQWFEENNIAFDETIIDDYA   40 (89)
T ss_dssp             CEEEEECTTCH-HHHHHHHHHHHTTCCCEEEECCSHH
T ss_pred             EEEEEEcCCCh-hHHHHHHHHHHcCCCceEEEeecCC
Confidence            58899999999 9999999999999888777776653

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=95.11  E-value=0.017  Score=61.19  Aligned_cols=40  Identities=15%  Similarity=-0.059  Sum_probs=35.6

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCC-CeEEEEecCCcccccc
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQ-RRDELQERGSHLSFRK  127 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~-~~V~lie~~~~~~~~~  127 (535)
                      ..+|+|||+|.+|+++|..+...+ .+|+|+|+.+.+++..
T Consensus         8 ~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~riGGr~   48 (516)
T 1rsg_A            8 KKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRL   48 (516)
T ss_dssp             EEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSSBTTC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCCCCce
Confidence            468999999999999999888888 9999999999887653

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=95.09  E-value=0.016  Score=59.26  Aligned_cols=36  Identities=11%  Similarity=-0.067  Sum_probs=32.6

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcc
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHL  123 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~  123 (535)
                      .++|+|||+|++|+.+|+.+...+.+|+|+|+.+..
T Consensus        23 ~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~~   58 (407)
T 3rp8_A           23 HMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEI   58 (407)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence            368999999999999999998899999999998754

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=95.01  E-value=0.02  Score=58.41  Aligned_cols=35  Identities=20%  Similarity=0.058  Sum_probs=31.8

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHL  123 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~  123 (535)
                      .+|+|||+|++|+.+|+.+...+.+|+|||+.+..
T Consensus        27 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   61 (398)
T 2xdo_A           27 KNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDR   61 (398)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSST
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCc
Confidence            57899999999999999998889999999998754

>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}

Probab=94.99  E-value=0.04  Score=43.00  Aligned_cols=34  Identities=18%  Similarity=0.335  Sum_probs=28.5

Q ss_pred             CcEEEEeCCCchhhHHHHHHHHHhcCCcceEEEEE
Q psy14461         58 NRILIFTHAVLREENARAERYLNARGDRFAVLYLD   92 (535)
Q Consensus        58 ~~v~v~~k~~cp~~~~~~k~~~~~~~~~~~~~~v~   92 (535)
                      +++++|++++|| +|.+++.++...+.++..+++.
T Consensus         6 ~~v~~y~~~~C~-~C~~~~~~L~~~~i~~~~vdv~   39 (89)
T 2klx_A            6 KEIILYTRPNCP-YCKRARDLLDKKGVKYTDIDAS   39 (89)
T ss_dssp             CCEEEESCSCCT-TTHHHHHHHHHHTCCEEEECSC
T ss_pred             ceEEEEECCCCh-hHHHHHHHHHHcCCCcEEEECC
Confidence            368899999999 9999999999998877555544

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=94.97  E-value=0.019  Score=58.33  Aligned_cols=54  Identities=13%  Similarity=0.097  Sum_probs=41.8

Q ss_pred             HHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCC
Q psy14461        281 QEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKK  341 (535)
Q Consensus       281 ~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~  341 (535)
                      ..+...+.+.+++.|+++ .+++|++++.+ ++.+.|+.   .+|   ++.+|.||+|+|..
T Consensus       153 ~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~-~~~v~v~t---~~g---~i~a~~VV~A~G~~  207 (397)
T 2oln_A          153 RGTLAALFTLAQAAGATLRAGETVTELVPD-ADGVSVTT---DRG---TYRAGKVVLACGPY  207 (397)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEEEE-TTEEEEEE---SSC---EEEEEEEEECCGGG
T ss_pred             HHHHHHHHHHHHHcCCEEECCCEEEEEEEc-CCeEEEEE---CCC---EEEcCEEEEcCCcC
Confidence            355667777788889999 99999999876 45566554   234   69999999999975

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=94.95  E-value=0.021  Score=60.51  Aligned_cols=37  Identities=11%  Similarity=-0.101  Sum_probs=33.8

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccc
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLS  124 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~  124 (535)
                      ..+|+|||+|++|+.+|+.+...+.+|+|+||.+..+
T Consensus        41 ~~DVvVVGaG~AGl~AA~~aa~~G~~V~vlEk~~~~G   77 (510)
T 4at0_A           41 EADVVVAGYGIAGVAASIEAARAGADVLVLERTSGWG   77 (510)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCC
Confidence            4799999999999999999988899999999998654

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=94.93  E-value=0.022  Score=59.08  Aligned_cols=39  Identities=10%  Similarity=-0.055  Sum_probs=34.7

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccc
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFR  126 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~  126 (535)
                      ..+|+|||+|.+|+++|..+...+.+|+|+|+.+.+++.
T Consensus         5 ~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~   43 (453)
T 2yg5_A            5 QRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGR   43 (453)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTT
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCCCc
Confidence            468999999999999999888889999999999877654

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=94.89  E-value=0.018  Score=59.03  Aligned_cols=38  Identities=16%  Similarity=0.116  Sum_probs=33.6

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCC-CeEEEEecCCccccc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQ-RRDELQERGSHLSFR  126 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~-~~V~lie~~~~~~~~  126 (535)
                      .+|+|||+|.+|+++|..+...+ .+|+|+|+.+.+++.
T Consensus         7 ~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~GG~   45 (424)
T 2b9w_A            7 SRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGGK   45 (424)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCSSTT
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCCCCc
Confidence            46899999999999999888888 899999999887654

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=94.78  E-value=0.018  Score=58.33  Aligned_cols=34  Identities=12%  Similarity=-0.033  Sum_probs=30.4

Q ss_pred             EEEeeCCccHHHHHHHHHhhC--CCeEEEEecCCcc
Q psy14461         90 YLDRIGDEGILLEEELKRQTN--QRRDELQERGSHL  123 (535)
Q Consensus        90 ~v~iiG~G~aG~~~al~~~~~--~~~V~lie~~~~~  123 (535)
                      +|+|||+|++|+.+|+.+...  +.+|+|+|+.+..
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~   37 (381)
T 3c4a_A            2 KILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQ   37 (381)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTT
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCC
Confidence            689999999999999988776  8999999998754

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=94.76  E-value=0.018  Score=59.98  Aligned_cols=57  Identities=14%  Similarity=-0.014  Sum_probs=43.6

Q ss_pred             HHHHHHHHHhhhcCCeEE-cceEEEEEEEeC-CCcE-EEEEecCCCCCceEEEcCEEEEccCCCCC
Q psy14461        281 QEMVRILLSSLTKAGVSI-QCCVIEKVISSF-DGMK-GVRGFHPESKEPFADVFKTVVNAMEKKFD  343 (535)
Q Consensus       281 ~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~-~~~~-~v~~~~~~~G~~~~~~~D~vi~a~G~~p~  343 (535)
                      ..+.+.+.+.+++.|+++ +++.|++|..+. ++++ .|..    +|+  ++.+|.||+++|..|.
T Consensus       242 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~~V~~----~g~--~~~ad~VV~a~~~~~~  301 (453)
T 2bcg_G          242 GELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKT----KLG--TFKAPLVIADPTYFPE  301 (453)
T ss_dssp             THHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEE----TTE--EEECSCEEECGGGCGG
T ss_pred             HHHHHHHHHHHHHcCCEEECCCEEEEEEEECCCCeEEEEEE----CCe--EEECCEEEECCCccch
Confidence            357777888888899999 999999998651 2443 3443    565  7999999999987754

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=94.70  E-value=0.028  Score=56.78  Aligned_cols=38  Identities=8%  Similarity=-0.068  Sum_probs=33.8

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFR  126 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~  126 (535)
                      ++++|||+|.+|+.+|.++...+.+|+|+|+++.+++.
T Consensus         2 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~   39 (367)
T 1i8t_A            2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGN   39 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGG
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCcc
Confidence            57899999999999999988888999999999876554

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A

Probab=94.70  E-value=0.034  Score=45.59  Aligned_cols=47  Identities=17%  Similarity=0.282  Sum_probs=38.5

Q ss_pred             ChhHHHHhhhcCCcEEEEeCCCchhhHHHHHHHHHhcCCcceEEEEEe
Q psy14461         46 TPPAYISRLSYENRILIFTHAVLREENARAERYLNARGDRFAVLYLDR   93 (535)
Q Consensus        46 ~l~~~~~~~i~~~~v~v~~k~~cp~~~~~~k~~~~~~~~~~~~~~v~i   93 (535)
                      .+..++..+++.++|++|..++|| +|.+++..+.+.+.++.+++++.
T Consensus         8 ~~~~~~~~~~~~~~vv~f~a~~C~-~C~~~~~~l~~~~~~~~~v~v~~   54 (116)
T 2e7p_A            8 AALKKAKELASSAPVVVFSKTYCG-YCNRVKQLLTQVGASYKVVELDE   54 (116)
T ss_dssp             HHHHHHHHHHTSSSEEEEECTTCH-HHHHHHHHHHHHTCCCEEEEGGG
T ss_pred             HHHHHHHHHHcCCCEEEEECCCCh-hHHHHHHHHHHcCCCeEEEEccC
Confidence            455677788888999999999999 99999999999888776555543

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=94.70  E-value=0.026  Score=58.85  Aligned_cols=53  Identities=19%  Similarity=0.130  Sum_probs=41.1

Q ss_pred             HHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCC
Q psy14461        282 EMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEK  340 (535)
Q Consensus       282 ~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~  340 (535)
                      .+.+.+.+.+++.|+++ +++.|++|+.++++.+.|+.    +|.  ++.+|.||+|++.
T Consensus       235 ~l~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~v~~----~~~--~~~ad~vv~a~p~  288 (477)
T 3nks_A          235 MLPQALETHLTSRGVSVLRGQPVCGLSLQAEGRWKVSL----RDS--SLEADHVISAIPA  288 (477)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCCCEEEECGGGCEEEEC----SSC--EEEESEEEECSCH
T ss_pred             HHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCceEEEEE----CCe--EEEcCEEEECCCH
Confidence            46777788888889999 99999999876322256654    455  6999999999975

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=94.67  E-value=0.019  Score=59.66  Aligned_cols=38  Identities=13%  Similarity=-0.030  Sum_probs=33.3

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCC------CeEEEEecCCccccc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQ------RRDELQERGSHLSFR  126 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~------~~V~lie~~~~~~~~  126 (535)
                      .+|+|||+|.+|+++|..+...+      .+|+|+|+.+.+++.
T Consensus         6 ~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~GG~   49 (470)
T 3i6d_A            6 KHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGK   49 (470)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSSCTT
T ss_pred             CcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCCCce
Confidence            67899999999999999887777      899999999877554

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=94.66  E-value=0.029  Score=57.28  Aligned_cols=39  Identities=10%  Similarity=-0.060  Sum_probs=34.4

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccc
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFR  126 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~  126 (535)
                      .++++|||+|.+|+.+|..+...+.+|+|+|+.+.+++.
T Consensus        29 ~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~   67 (397)
T 3hdq_A           29 GFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGGN   67 (397)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGG
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCCCCc
Confidence            478999999999999999888889999999999877544

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=94.66  E-value=0.021  Score=59.09  Aligned_cols=34  Identities=15%  Similarity=0.149  Sum_probs=30.2

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        239 AWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       239 ~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      +..++|+|||||+.|+-+|..|++.|.+|+|+++
T Consensus        20 ~m~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~   53 (430)
T 3ihm_A           20 HMKKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTD   53 (430)
T ss_dssp             ---CEEEEECCHHHHHHHHHHHHHTTCEEEEEES
T ss_pred             cCCCCEEEECCcHHHHHHHHHHHHCCCeEEEEcC
Confidence            3446899999999999999999999999999998

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=94.56  E-value=0.029  Score=58.80  Aligned_cols=38  Identities=13%  Similarity=-0.011  Sum_probs=34.0

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFR  126 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~  126 (535)
                      .+|+|||+|.+|+.+|..+...+.+|+|+|+.+.+++.
T Consensus        12 ~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GG~   49 (489)
T 2jae_A           12 HSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGGR   49 (489)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCCCc
Confidence            57899999999999999988888999999999877554

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=94.54  E-value=0.023  Score=60.12  Aligned_cols=38  Identities=8%  Similarity=-0.114  Sum_probs=33.9

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFR  126 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~  126 (535)
                      .+|+|||+|.+|+++|..+...+.+|+|+|+++.+++.
T Consensus         5 ~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GGr   42 (520)
T 1s3e_A            5 CDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGR   42 (520)
T ss_dssp             CSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTT
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCc
Confidence            46899999999999999888888999999999987655

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=94.48  E-value=0.026  Score=58.29  Aligned_cols=33  Identities=9%  Similarity=-0.045  Sum_probs=30.7

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCC
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGS  121 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~  121 (535)
                      .+|+|||+|++|+.+|+.+...+.+|+|+|+.+
T Consensus        23 ~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~   55 (430)
T 3ihm_A           23 KRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK   55 (430)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            468999999999999999999999999999986

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=94.46  E-value=0.033  Score=56.43  Aligned_cols=38  Identities=11%  Similarity=-0.102  Sum_probs=33.7

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecC-Cccccc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERG-SHLSFR  126 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~-~~~~~~  126 (535)
                      .+|+|||+|.+|+.+|..+...+.+|+|+|+. +.+++.
T Consensus        45 ~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~vGGr   83 (376)
T 2e1m_A           45 KRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGGR   83 (376)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCCBTT
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCcEEEEeccccccCCc
Confidence            57899999999999999888888999999999 776554

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=94.41  E-value=0.033  Score=58.44  Aligned_cols=55  Identities=16%  Similarity=0.224  Sum_probs=44.2

Q ss_pred             HHHHHHHHHhhhcCC-eEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCC
Q psy14461        281 QEMVRILLSSLTKAG-VSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKK  341 (535)
Q Consensus       281 ~~~~~~~~~~l~~~g-V~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~  341 (535)
                      ..+.+.+.+.+++.| +++ +++.|++|+.. ++.+.|++   .+|+  ++.+|.||+|+|..
T Consensus       255 ~~l~~~l~~~l~~~g~~~i~~~~~V~~i~~~-~~~v~v~~---~~g~--~~~ad~vI~a~~~~  311 (495)
T 2vvm_A          255 SAFARRFWEEAAGTGRLGYVFGCPVRSVVNE-RDAARVTA---RDGR--EFVAKRVVCTIPLN  311 (495)
T ss_dssp             HHHHHHHHHHHHTTTCEEEESSCCEEEEEEC-SSSEEEEE---TTCC--EEEEEEEEECCCGG
T ss_pred             HHHHHHHHHHhhhcCceEEEeCCEEEEEEEc-CCEEEEEE---CCCC--EEEcCEEEECCCHH
Confidence            456777788888888 999 99999999876 45677776   3676  79999999999853

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=94.29  E-value=0.024  Score=57.94  Aligned_cols=39  Identities=21%  Similarity=0.122  Sum_probs=33.8

Q ss_pred             EEEEeeCCccHHHHHHHHHhhC-CCeEEEEecCCcccccc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTN-QRRDELQERGSHLSFRK  127 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~-~~~V~lie~~~~~~~~~  127 (535)
                      ++++|||+|.+|+.+|..+... +.+|+|+|+++.+++..
T Consensus         8 ~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~GG~~   47 (399)
T 1v0j_A            8 FDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGGNA   47 (399)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSSSGGG
T ss_pred             CCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCee
Confidence            4689999999999999888776 88999999999876553

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=94.24  E-value=0.035  Score=57.18  Aligned_cols=57  Identities=5%  Similarity=-0.064  Sum_probs=45.8

Q ss_pred             cHHHHHHHHHhhhcCCeEE-cce---EEEEEEEeCCCcEE-EEEecCCCCCceEEEcCEEEEccCCCC
Q psy14461        280 DQEMVRILLSSLTKAGVSI-QCC---VIEKVISSFDGMKG-VRGFHPESKEPFADVFKTVVNAMEKKF  342 (535)
Q Consensus       280 ~~~~~~~~~~~l~~~gV~i-~~~---~v~~i~~~~~~~~~-v~~~~~~~G~~~~~~~D~vi~a~G~~p  342 (535)
                      ...+...+.+.+++.|+++ .++   +|++|..+ ++.+. |++   .+|+  ++.+|.||+|+|...
T Consensus       160 ~~~~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~~-~~~v~gV~t---~~G~--~i~Ad~VV~AtG~~s  221 (438)
T 3dje_A          160 ARNALVAAAREAQRMGVKFVTGTPQGRVVTLIFE-NNDVKGAVT---ADGK--IWRAERTFLCAGASA  221 (438)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEESTTTTCEEEEEEE-TTEEEEEEE---TTTE--EEECSEEEECCGGGG
T ss_pred             HHHHHHHHHHHHHhcCCEEEeCCcCceEEEEEec-CCeEEEEEE---CCCC--EEECCEEEECCCCCh
Confidence            3567778888888899999 999   99999876 56665 766   3675  799999999999753

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=94.17  E-value=0.032  Score=58.62  Aligned_cols=37  Identities=22%  Similarity=0.269  Sum_probs=33.4

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC
Q psy14461        240 WPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL  276 (535)
Q Consensus       240 ~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l  276 (535)
                      .+++|+|||||.+|+.+|..|++.|.+|+|+++ +++.
T Consensus        32 ~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~g   69 (498)
T 2iid_A           32 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPG   69 (498)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSB
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCC
Confidence            357899999999999999999999999999998 6654

>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.05  E-value=0.038  Score=45.45  Aligned_cols=46  Identities=15%  Similarity=0.083  Sum_probs=34.1

Q ss_pred             CcEEEEeCCCchhhHH------HHHHHHHhcCCcceEEEEEeeCCccHHHHHHHHHh
Q psy14461         58 NRILIFTHAVLREENA------RAERYLNARGDRFAVLYLDRIGDEGILLEEELKRQ  108 (535)
Q Consensus        58 ~~v~v~~k~~cp~~~~------~~k~~~~~~~~~~~~~~v~iiG~G~aG~~~al~~~  108 (535)
                      .+|++|++++|| +|.      +++.++.+.+.+++.++|.  .. +. ....+...
T Consensus         8 m~V~vy~~~~C~-~C~~~~~~~~ak~~L~~~gi~y~~vdI~--~~-~~-~~~~l~~~   59 (111)
T 2ct6_A            8 MVIRVFIASSSG-FVAIKKKQQDVVRFLEANKIEFEEVDIT--MS-EE-QRQWMYKN   59 (111)
T ss_dssp             CCEEEEECSSCS-CHHHHHHHHHHHHHHHHTTCCEEEEETT--TC-HH-HHHHHHHS
T ss_pred             cEEEEEEcCCCC-CcccchhHHHHHHHHHHcCCCEEEEECC--CC-HH-HHHHHHHH
Confidence            368999999999 999      8999999999876554443  22 44 55556554

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=94.04  E-value=0.037  Score=57.74  Aligned_cols=38  Identities=13%  Similarity=0.037  Sum_probs=34.0

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFR  126 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~  126 (535)
                      .+|+|||+|.+|+.+|..+...+.+|+|+|+.+.+++.
T Consensus        17 ~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~GGr   54 (478)
T 2ivd_A           17 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGA   54 (478)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTT
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCce
Confidence            46899999999999999888889999999999987654

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=93.99  E-value=0.065  Score=46.72  Aligned_cols=35  Identities=17%  Similarity=0.112  Sum_probs=31.5

Q ss_pred             cCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        238 GAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       238 ~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      ....++|+|+|+|.+|..+|..|.+.|.+|+++++
T Consensus        16 ~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~   50 (155)
T 2g1u_A           16 KQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDK   50 (155)
T ss_dssp             -CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             ccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEC
Confidence            34467899999999999999999999999999987

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=93.99  E-value=0.048  Score=58.26  Aligned_cols=36  Identities=11%  Similarity=-0.028  Sum_probs=32.7

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcc
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHL  123 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~  123 (535)
                      ..+|+|||+|++|+.+|+.+...+.+|+|+|+.+..
T Consensus        26 ~~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~   61 (549)
T 2r0c_A           26 ETDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGT   61 (549)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            478999999999999999998899999999998754

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=93.96  E-value=0.038  Score=54.77  Aligned_cols=37  Identities=14%  Similarity=-0.023  Sum_probs=32.3

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhC--CCeEEEEecCCccc
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTN--QRRDELQERGSHLS  124 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~--~~~V~lie~~~~~~  124 (535)
                      ..+|+|||+|++|+.+|+.+...  +.+|+|+|+.+..+
T Consensus        65 ~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~g  103 (326)
T 2gjc_A           65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPG  103 (326)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCC
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCcccc
Confidence            46899999999999999988766  89999999987654

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=93.89  E-value=0.052  Score=55.04  Aligned_cols=31  Identities=42%  Similarity=0.443  Sum_probs=29.6

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      ++|+|||||..|+++|..+++.|.+|+++++
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~   32 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEM   32 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECC
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCcEEEEec
Confidence            4799999999999999999999999999987

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=93.88  E-value=0.049  Score=55.33  Aligned_cols=38  Identities=5%  Similarity=-0.103  Sum_probs=33.6

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFR  126 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~  126 (535)
                      ++++|||+|.+|+.+|..+...+.+|+|+|+++.+++.
T Consensus         4 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~   41 (384)
T 2bi7_A            4 KKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGN   41 (384)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGG
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCcCCc
Confidence            47899999999999999888888999999999877644

>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}

Probab=93.82  E-value=0.036  Score=43.49  Aligned_cols=35  Identities=20%  Similarity=0.527  Sum_probs=30.2

Q ss_pred             cEEEEeCCCchhhHHHHHHHHHhcCCcceEEEEEee
Q psy14461         59 RILIFTHAVLREENARAERYLNARGDRFAVLYLDRI   94 (535)
Q Consensus        59 ~v~v~~k~~cp~~~~~~k~~~~~~~~~~~~~~v~ii   94 (535)
                      +|.+|+.++|| +|.+++.++...+.+++.++|...
T Consensus        13 ~v~ly~~~~Cp-~C~~~~~~L~~~gi~~~~~~v~~~   47 (92)
T 3ic4_A           13 EVLMYGLSTCP-HCKRTLEFLKREGVDFEVIWIDKL   47 (92)
T ss_dssp             SSEEEECTTCH-HHHHHHHHHHHHTCCCEEEEGGGC
T ss_pred             eEEEEECCCCh-HHHHHHHHHHHcCCCcEEEEeeeC
Confidence            58899999999 999999999999988877766543

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=93.81  E-value=0.057  Score=57.88  Aligned_cols=35  Identities=23%  Similarity=0.029  Sum_probs=32.4

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCc
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSH  122 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~  122 (535)
                      .++|+|||+|.+|+.+|+.+...+.+|+|+|+++.
T Consensus        18 ~~DVvVIGgGi~Gl~~A~~La~~G~~V~LlEk~d~   52 (561)
T 3da1_A           18 QLDLLVIGGGITGAGIALDAQVRGIQTGLVEMNDF   52 (561)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSST
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCC
Confidence            37999999999999999999999999999999864

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=93.81  E-value=0.05  Score=54.51  Aligned_cols=33  Identities=15%  Similarity=0.016  Sum_probs=30.6

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCC
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGS  121 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~  121 (535)
                      .+|+|||+|.+|+++|+.+...+.+|+|+|+..
T Consensus         7 ~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~   39 (363)
T 1c0p_A            7 KRVVVLGSGVIGLSSALILARKGYSVHILARDL   39 (363)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCEEEEEeccC
Confidence            578999999999999999888899999999976

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=93.79  E-value=0.043  Score=56.30  Aligned_cols=33  Identities=30%  Similarity=0.476  Sum_probs=30.7

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcC
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRL  275 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~  275 (535)
                      +|+|||||..|+-+|..|++.|.+|+|+++ +.+
T Consensus         3 dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~~~   36 (431)
T 3k7m_X            3 DAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERL   36 (431)
T ss_dssp             EEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence            699999999999999999999999999998 654

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=93.68  E-value=0.059  Score=55.20  Aligned_cols=35  Identities=11%  Similarity=0.198  Sum_probs=32.1

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCC-CcEEEEEc-CcC
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLG-VPVTLVYS-RRL  275 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g-~~Vtlv~~-~~~  275 (535)
                      ..+|+|||||..|+-+|..|++.| .+|+++++ +++
T Consensus         6 ~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~   42 (424)
T 2b9w_A            6 DSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHV   42 (424)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCS
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCC
Confidence            468999999999999999999999 89999998 655

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=93.68  E-value=0.051  Score=58.58  Aligned_cols=36  Identities=14%  Similarity=0.034  Sum_probs=32.6

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcc
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHL  123 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~  123 (535)
                      ..+|+|||+|.+|+.+|+.+...+.+|+|+||....
T Consensus         7 ~~DVvVVGaG~AGl~AA~~la~~G~~V~vlEK~~~~   42 (588)
T 2wdq_A            7 EFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPT   42 (588)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGG
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            478999999999999999998889999999998754

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=93.67  E-value=0.046  Score=57.43  Aligned_cols=35  Identities=26%  Similarity=0.162  Sum_probs=30.9

Q ss_pred             CcEEEECCChHHHHHHHHHHh-CCCcEEEEEc-CcCC
Q psy14461        242 GKTLVLGGSLMAVEIAATLNF-LGVPVTLVYS-RRLL  276 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~-~g~~Vtlv~~-~~~l  276 (535)
                      -.|+|||||.+|+-+|..|++ .|.+|+|+++ +++.
T Consensus        11 ~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~~~G   47 (513)
T 4gde_A           11 VDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPG   47 (513)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCCSCEEEEESSSSCC
T ss_pred             CCEEEECCcHHHHHHHHHHHhhCCCCEEEEECCCCCc
Confidence            369999999999999999987 5999999998 7653

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=93.66  E-value=0.056  Score=56.80  Aligned_cols=38  Identities=13%  Similarity=-0.033  Sum_probs=34.0

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFR  126 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~  126 (535)
                      .+|+|||+|.+|+.+|..+...+.+|+|+|+.+.+++.
T Consensus        14 ~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~   51 (504)
T 1sez_A           14 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGK   51 (504)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCc
Confidence            57899999999999999988889999999999987554

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=93.64  E-value=0.035  Score=55.35  Aligned_cols=34  Identities=15%  Similarity=-0.028  Sum_probs=29.3

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCC------CeEEEEecCCc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQ------RRDELQERGSH  122 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~------~~V~lie~~~~  122 (535)
                      ++|+|||+|.+|+++|+.+...+      .+|+|+|++..
T Consensus         1 mdVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~~   40 (351)
T 3g3e_A            1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFT   40 (351)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSCG
T ss_pred             CcEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCCC
Confidence            37899999999999998777665      89999999863

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=93.58  E-value=0.046  Score=57.26  Aligned_cols=35  Identities=29%  Similarity=0.302  Sum_probs=32.0

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcC
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRL  275 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~  275 (535)
                      ..+|+|||+|..|+-+|..|++.|.+|+|+++ +++
T Consensus        11 ~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~   46 (489)
T 2jae_A           11 SHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRP   46 (489)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCC
Confidence            46899999999999999999999999999998 654

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=93.57  E-value=0.06  Score=57.52  Aligned_cols=58  Identities=17%  Similarity=0.085  Sum_probs=43.3

Q ss_pred             HHHHHHHHHhhhcC-CeEE-cceEEEEEEEeCCCc-EEEEEecCCCCCceEEEcCEEEEccCCCCCC
Q psy14461        281 QEMVRILLSSLTKA-GVSI-QCCVIEKVISSFDGM-KGVRGFHPESKEPFADVFKTVVNAMEKKFDF  344 (535)
Q Consensus       281 ~~~~~~~~~~l~~~-gV~i-~~~~v~~i~~~~~~~-~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~  344 (535)
                      ..+.+.+.+.+++. ||++ .+ +|+++..++++. +.|++   .+|+  ++.+|.||.|+|..+..
T Consensus       194 ~~l~~~L~~~~~~~~Gv~i~~~-~V~~i~~~~~g~~~~v~~---~~G~--~i~ad~vI~A~G~~S~~  254 (550)
T 2e4g_A          194 HLVADFLRRFATEKLGVRHVED-RVEHVQRDANGNIESVRT---ATGR--VFDADLFVDCSGFRGLL  254 (550)
T ss_dssp             HHHHHHHHHHHHHHSCCEEEEC-CEEEEEECTTSCEEEEEE---TTSC--EEECSEEEECCGGGCCC
T ss_pred             HHHHHHHHHHHHhcCCcEEEEC-eEeEEEEcCCCCEEEEEE---CCCC--EEECCEEEECCCCchhh
Confidence            45677777878777 9999 88 899997653333 34555   3676  79999999999987654

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=93.56  E-value=0.055  Score=58.67  Aligned_cols=35  Identities=9%  Similarity=-0.078  Sum_probs=32.0

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCc
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSH  122 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~  122 (535)
                      ..+|+|||+|++|+.+|+.+...+.+|+|+||...
T Consensus        18 ~~DVvVVG~G~AGl~AAl~aa~~G~~V~vlEK~~~   52 (621)
T 2h88_A           18 EFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFP   52 (621)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCG
T ss_pred             cCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCC
Confidence            46899999999999999999888999999999864

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=93.56  E-value=0.049  Score=57.80  Aligned_cols=34  Identities=9%  Similarity=-0.186  Sum_probs=30.2

Q ss_pred             EEEEeeCCccHHHHHHHHHhh------------CCCeEEEEecCCc
Q psy14461         89 LYLDRIGDEGILLEEELKRQT------------NQRRDELQERGSH  122 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~------------~~~~V~lie~~~~  122 (535)
                      .+|+|||+|++|+.+|+.+..            .+.+|+|||+.+.
T Consensus         8 ~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G~~V~liE~~~~   53 (526)
T 2pyx_A            8 TEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESPDV   53 (526)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHHHHEETTEECSSCSCEEEEEECSSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhhhccccccccCCCCCeEEEEeCCCC
Confidence            578999999999999987777            7899999999764

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=93.49  E-value=0.054  Score=59.58  Aligned_cols=58  Identities=12%  Similarity=0.103  Sum_probs=44.7

Q ss_pred             cHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCC
Q psy14461        280 DQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKF  342 (535)
Q Consensus       280 ~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p  342 (535)
                      +..+...+.+.+++.|+++ .+++|+++..+ ++.+.|++.   +|+ .++.+|.||+|+|...
T Consensus       411 p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~-~~~v~V~t~---~G~-~~i~Ad~VVlAtG~~s  469 (689)
T 3pvc_A          411 PSDLTHALMMLAQQNGMTCHYQHELQRLKRI-DSQWQLTFG---QSQ-AAKHHATVILATGHRL  469 (689)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEESCCEEEEEEC-SSSEEEEEC----CC-CCEEESEEEECCGGGT
T ss_pred             HHHHHHHHHHHHHhCCCEEEeCCeEeEEEEe-CCeEEEEeC---CCc-EEEECCEEEECCCcch
Confidence            4567777888888899999 99999999876 455666663   442 1489999999999764

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=93.46  E-value=0.06  Score=53.90  Aligned_cols=31  Identities=23%  Similarity=0.360  Sum_probs=29.7

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      .+|+|||||.+|+-+|..|++.|.+|+++++
T Consensus         7 ~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~   37 (363)
T 1c0p_A            7 KRVVVLGSGVIGLSSALILARKGYSVHILAR   37 (363)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCEEEEEec
Confidence            5799999999999999999999999999997

>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*

Probab=93.43  E-value=0.081  Score=40.18  Aligned_cols=48  Identities=23%  Similarity=0.368  Sum_probs=34.0

Q ss_pred             cEEEEeCCCchhhHHHHHHHHHhcCCcceEEEEEeeCCccHHHHHHHHHhhCC
Q psy14461         59 RILIFTHAVLREENARAERYLNARGDRFAVLYLDRIGDEGILLEEELKRQTNQ  111 (535)
Q Consensus        59 ~v~v~~k~~cp~~~~~~k~~~~~~~~~~~~~~v~iiG~G~aG~~~al~~~~~~  111 (535)
                      ++.+|++++|| +|.+++.++.+.+.++..+++.   .++. ....+....+.
T Consensus         2 ~i~~y~~~~C~-~C~~~~~~l~~~~i~~~~~~i~---~~~~-~~~~~~~~~~~   49 (82)
T 1fov_A            2 NVEIYTKETCP-YCHRAKALLSSKGVSFQELPID---GNAA-KREEMIKRSGR   49 (82)
T ss_dssp             CEEEEECSSCH-HHHHHHHHHHHHTCCCEEEECT---TCSH-HHHHHHHHHSS
T ss_pred             cEEEEECCCCh-hHHHHHHHHHHCCCCcEEEECC---CCHH-HHHHHHHHhCC
Confidence            57889999999 9999999999998877655543   3344 44445444433

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=93.39  E-value=0.05  Score=56.64  Aligned_cols=34  Identities=32%  Similarity=0.404  Sum_probs=31.4

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCC--cEEEEEc-CcC
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGV--PVTLVYS-RRL  275 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~--~Vtlv~~-~~~  275 (535)
                      ++|+|||||.+|+-+|..|++.|.  +|+|+++ +++
T Consensus         3 ~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~~   39 (477)
T 3nks_A            3 RTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERL   39 (477)
T ss_dssp             CEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSSS
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCCC
Confidence            579999999999999999999999  9999998 654

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=93.36  E-value=0.046  Score=57.70  Aligned_cols=34  Identities=12%  Similarity=-0.023  Sum_probs=28.5

Q ss_pred             EEEEeeCCccHHHHHHHHHhh---CCCeEEEEecCCc
Q psy14461         89 LYLDRIGDEGILLEEELKRQT---NQRRDELQERGSH  122 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~---~~~~V~lie~~~~  122 (535)
                      .+|+|||+|++|+.+|+.+..   .+.+|+|+|+.+.
T Consensus         3 ~dVvIVGgG~aGl~~A~~La~~~~~G~~V~lvE~~~~   39 (511)
T 2weu_A            3 RSVVIVGGGTAGWMTASYLKAAFDDRIDVTLVESGNV   39 (511)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHHHGGGSEEEEEEC---
T ss_pred             ceEEEECCCHHHHHHHHHHHhhcCCCCEEEEEecCCC
Confidence            478999999999999988877   8899999999763

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=93.32  E-value=0.062  Score=55.99  Aligned_cols=38  Identities=18%  Similarity=0.030  Sum_probs=33.0

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCC--CeEEEEecCCccccc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQ--RRDELQERGSHLSFR  126 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~--~~V~lie~~~~~~~~  126 (535)
                      .+|+|||+|.+|+++|..+...+  .+|+|+|+.+.+++.
T Consensus         5 ~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~GG~   44 (475)
T 3lov_A            5 KRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGGK   44 (475)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSSBTT
T ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCCCCce
Confidence            47899999999999999887777  999999998876543

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=93.29  E-value=0.061  Score=56.42  Aligned_cols=39  Identities=10%  Similarity=-0.090  Sum_probs=34.0

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccc
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFR  126 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~  126 (535)
                      ..+|+|||+|.+|+.+|..+...+.+|+|+|+.+.+++.
T Consensus        33 ~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~gg~   71 (498)
T 2iid_A           33 PKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGR   71 (498)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTT
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCc
Confidence            357899999999999999888888999999999877554

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=93.27  E-value=0.06  Score=53.19  Aligned_cols=35  Identities=11%  Similarity=0.139  Sum_probs=30.3

Q ss_pred             CCcEEEECCChHHHHHHHHHH--hCCCcEEEEEc-CcC
Q psy14461        241 PGKTLVLGGSLMAVEIAATLN--FLGVPVTLVYS-RRL  275 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~--~~g~~Vtlv~~-~~~  275 (535)
                      ...|+|||+|+.|+-+|..|+  +.|.+|+++++ +.+
T Consensus        65 ~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~  102 (326)
T 3fpz_A           65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAP  102 (326)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCC
Confidence            357999999999999999996  45999999998 654

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=93.25  E-value=0.065  Score=55.72  Aligned_cols=35  Identities=17%  Similarity=0.164  Sum_probs=32.4

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL  276 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l  276 (535)
                      .+|+|||+|..|+-+|..|++.|.+|+++++ +.+.
T Consensus        12 ~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~~~G   47 (453)
T 2bcg_G           12 YDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYG   47 (453)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCC
Confidence            5799999999999999999999999999999 7664

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=93.25  E-value=0.061  Score=55.61  Aligned_cols=55  Identities=15%  Similarity=0.018  Sum_probs=42.4

Q ss_pred             cHHHHHHHHHhhhcCCeEE-cceEEEEEEE---------------eCCCcE-EEEEecCCCCCceEE--EcCEEEEccCC
Q psy14461        280 DQEMVRILLSSLTKAGVSI-QCCVIEKVIS---------------SFDGMK-GVRGFHPESKEPFAD--VFKTVVNAMEK  340 (535)
Q Consensus       280 ~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~---------------~~~~~~-~v~~~~~~~G~~~~~--~~D~vi~a~G~  340 (535)
                      ...+...+.+.+++.|+++ .+++|+++..               . ++.+ .|.+   .+|   ++  .+|.||+|+|.
T Consensus       180 ~~~l~~~L~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~-~~~v~~V~t---~~g---~i~~~Ad~VV~AtG~  252 (448)
T 3axb_A          180 AEKVVDYYYRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQ-EARASAAVL---SDG---TRVEVGEKLVVAAGV  252 (448)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTS-CEEEEEEEE---TTS---CEEEEEEEEEECCGG
T ss_pred             HHHHHHHHHHHHHhCCCEEEcCCeEEEEEecccccccccccccccC-CCceEEEEe---CCC---EEeecCCEEEECCCc
Confidence            3477788888888999999 9999999986               3 3443 3554   356   47  99999999996


Q ss_pred             C
Q psy14461        341 K  341 (535)
Q Consensus       341 ~  341 (535)
                      .
T Consensus       253 ~  253 (448)
T 3axb_A          253 W  253 (448)
T ss_dssp             G
T ss_pred             C
Confidence            4

>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}

Probab=93.11  E-value=0.093  Score=41.03  Aligned_cols=48  Identities=21%  Similarity=0.306  Sum_probs=34.4

Q ss_pred             CcEEEEeCCCchhhHHHHHHHHHhcCCcceEEEEEeeCCccHHHHHHHHHhhC
Q psy14461         58 NRILIFTHAVLREENARAERYLNARGDRFAVLYLDRIGDEGILLEEELKRQTN  110 (535)
Q Consensus        58 ~~v~v~~k~~cp~~~~~~k~~~~~~~~~~~~~~v~iiG~G~aG~~~al~~~~~  110 (535)
                      +++.+|++++|| +|.+++.++.+.+.+++.+++.   ..+. ....+....+
T Consensus         6 ~~v~ly~~~~C~-~C~~~~~~L~~~~i~~~~~di~---~~~~-~~~~l~~~~~   53 (92)
T 2khp_A            6 VDVIIYTRPGCP-YCARAKALLARKGAEFNEIDAS---ATPE-LRAEMQERSG   53 (92)
T ss_dssp             CCEEEEECTTCH-HHHHHHHHHHHTTCCCEEEEST---TSHH-HHHHHHHHHT
T ss_pred             ccEEEEECCCCh-hHHHHHHHHHHcCCCcEEEECC---CCHH-HHHHHHHHhC
Confidence            368899999999 9999999999998877655543   2233 4555544433

>1rw1_A Conserved hypothetical protein YFFB; thioredoxin fold, structure 2 function project, S2F, structu genomics, unknown function; HET: MSE IPA; 1.02A {Pseudomonas aeruginosa} SCOP: c.47.1.12

Probab=93.10  E-value=0.078  Score=43.79  Aligned_cols=32  Identities=6%  Similarity=0.140  Sum_probs=27.7

Q ss_pred             EEEEeCCCchhhHHHHHHHHHhcCCcceEEEEE
Q psy14461         60 ILIFTHAVLREENARAERYLNARGDRFAVLYLD   92 (535)
Q Consensus        60 v~v~~k~~cp~~~~~~k~~~~~~~~~~~~~~v~   92 (535)
                      |.+|+++.|| +|.++++++.+.|..++++++.
T Consensus         2 i~iY~~~~C~-~C~kak~~L~~~gi~~~~~di~   33 (114)
T 1rw1_A            2 YVLYGIKACD-TMKKARTWLDEHKVAYDFHDYK   33 (114)
T ss_dssp             EEEEECSSCH-HHHHHHHHHHHTTCCEEEEEHH
T ss_pred             EEEEECCCCh-HHHHHHHHHHHCCCceEEEeec
Confidence            6789999999 9999999999999887665554

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=93.05  E-value=0.069  Score=56.44  Aligned_cols=34  Identities=24%  Similarity=0.395  Sum_probs=31.5

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcC
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRL  275 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~  275 (535)
                      .+|+|||||..|+-+|..|++.|.+|+|+++ +++
T Consensus         5 ~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~   39 (520)
T 1s3e_A            5 CDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRV   39 (520)
T ss_dssp             CSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            5799999999999999999999999999998 654

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=92.94  E-value=0.051  Score=53.94  Aligned_cols=76  Identities=12%  Similarity=0.012  Sum_probs=55.0

Q ss_pred             CCcEEEECCChHHHH-HHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEE
Q psy14461        241 PGKTLVLGGSLMAVE-IAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVR  317 (535)
Q Consensus       241 ~k~vvViGgG~~g~e-~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~  317 (535)
                      .++|.|||.|-+|+. +|..|.++|.+|++.+. +.. +         ..+.|++.||++ .+...              
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~~-~---------~~~~L~~~gi~v~~g~~~--------------   59 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMYP-P---------MSTQLEALGIDVYEGFDA--------------   59 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCCT-T---------HHHHHHHTTCEEEESCCG--------------
T ss_pred             CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCCc-H---------HHHHHHhCCCEEECCCCH--------------
Confidence            578999999999996 88999999999999997 431 1         124466678877 43210              


Q ss_pred             EecCCCCCceE-EEcCEEEEccCCCCCCCCC
Q psy14461        318 GFHPESKEPFA-DVFKTVVNAMEKKFDFAAL  347 (535)
Q Consensus       318 ~~~~~~G~~~~-~~~D~vi~a~G~~p~~~~l  347 (535)
                             +... ..+|.|+++.|..|+.+.+
T Consensus        60 -------~~l~~~~~d~vV~Spgi~~~~p~~   83 (326)
T 3eag_A           60 -------AQLDEFKADVYVIGNVAKRGMDVV   83 (326)
T ss_dssp             -------GGGGSCCCSEEEECTTCCTTCHHH
T ss_pred             -------HHcCCCCCCEEEECCCcCCCCHHH
Confidence                   0001 2479999999999887654

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=92.89  E-value=0.072  Score=56.33  Aligned_cols=33  Identities=21%  Similarity=0.387  Sum_probs=30.6

Q ss_pred             CcEEEECCChHHHHHHHHHHhCC-CcEEEEEc-Cc
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLG-VPVTLVYS-RR  274 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g-~~Vtlv~~-~~  274 (535)
                      .+|+|||||..|+-+|..|++.| .+|+|+++ ++
T Consensus         9 ~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~r   43 (516)
T 1rsg_A            9 KKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDR   43 (516)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCC
Confidence            57999999999999999999999 99999987 54

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=92.72  E-value=0.16  Score=54.57  Aligned_cols=35  Identities=11%  Similarity=-0.085  Sum_probs=30.9

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCC-CeEEEEecCCc
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQ-RRDELQERGSH  122 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~-~~V~lie~~~~  122 (535)
                      .+|++|||+|.||+..|.++...+ .+|+|+|++..
T Consensus         6 ~yDyIVVGgG~AG~v~A~rLse~~~~~VLllEaG~~   41 (577)
T 3q9t_A            6 HFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIG   41 (577)
T ss_dssp             EEEEEEESCSHHHHHHHHHHTTSTTSCEEEECSSCS
T ss_pred             cccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence            479999999999999999887655 79999999875

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=92.69  E-value=0.081  Score=55.10  Aligned_cols=35  Identities=29%  Similarity=0.383  Sum_probs=31.6

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcC
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRL  275 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~  275 (535)
                      ..+|+|||+|..|+-+|..|++.|.+|+|+++ +++
T Consensus        16 ~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~   51 (478)
T 2ivd_A           16 GMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARL   51 (478)
T ss_dssp             -CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCC
Confidence            46899999999999999999999999999998 654

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=92.67  E-value=0.041  Score=57.00  Aligned_cols=34  Identities=21%  Similarity=0.323  Sum_probs=31.2

Q ss_pred             CcEEEECCChHHHHHHHHHHhCC------CcEEEEEc-CcC
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLG------VPVTLVYS-RRL  275 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g------~~Vtlv~~-~~~  275 (535)
                      ++|+|||||.+|+-+|..|++.|      .+|+|+++ +++
T Consensus         6 ~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~   46 (470)
T 3i6d_A            6 KHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRV   46 (470)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCC
Confidence            57999999999999999999999      99999998 554

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=92.61  E-value=0.066  Score=57.06  Aligned_cols=35  Identities=17%  Similarity=0.073  Sum_probs=31.4

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcc
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHL  123 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~  123 (535)
                      ..+|+|||+|++|+.+|+.+.. +.+|+|+||....
T Consensus         8 ~~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~~~   42 (540)
T 1chu_A            8 SCDVLIIGSGAAGLSLALRLAD-QHQVIVLSKGPVT   42 (540)
T ss_dssp             ECSEEEECCSHHHHHHHHHHTT-TSCEEEECSSCTT
T ss_pred             CCCEEEECccHHHHHHHHHHhc-CCcEEEEECCCCC
Confidence            3578999999999999999988 9999999998754

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=92.55  E-value=0.092  Score=54.25  Aligned_cols=34  Identities=18%  Similarity=0.337  Sum_probs=31.3

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcC
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRL  275 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~  275 (535)
                      .+|+|||+|..|+-+|..|++.|.+|+|+++ +.+
T Consensus         6 ~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~   40 (453)
T 2yg5_A            6 RDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRV   40 (453)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence            4799999999999999999999999999998 654

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=92.51  E-value=0.091  Score=57.49  Aligned_cols=35  Identities=9%  Similarity=-0.064  Sum_probs=31.5

Q ss_pred             EEEEEeeCCccHHHHHHHHHhh-----CCCeEEEEecCCc
Q psy14461         88 VLYLDRIGDEGILLEEELKRQT-----NQRRDELQERGSH  122 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~-----~~~~V~lie~~~~  122 (535)
                      .++|+|||+|++|+.+|+.+..     .+.+|+|||+.+.
T Consensus         8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~   47 (665)
T 1pn0_A            8 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRST   47 (665)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSS
T ss_pred             CCcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCC
Confidence            4789999999999999998888     8999999999764

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1

Probab=92.50  E-value=0.12  Score=39.23  Aligned_cols=31  Identities=26%  Similarity=0.384  Sum_probs=26.0

Q ss_pred             cEEEEeCCCchhhHHHHHHHHHhcCCcceEEE
Q psy14461         59 RILIFTHAVLREENARAERYLNARGDRFAVLY   90 (535)
Q Consensus        59 ~v~v~~k~~cp~~~~~~k~~~~~~~~~~~~~~   90 (535)
                      ++.+|+.++|| +|.+++.++.+.+.++..++
T Consensus         2 ~v~~f~~~~C~-~C~~~~~~l~~~~i~~~~vd   32 (81)
T 1h75_A            2 RITIYTRNDCV-QCHATKRAMENRGFDFEMIN   32 (81)
T ss_dssp             CEEEEECTTCH-HHHHHHHHHHHTTCCCEEEE
T ss_pred             EEEEEcCCCCh-hHHHHHHHHHHCCCCeEEEE
Confidence            47889999999 99999999999887765443

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=92.44  E-value=0.097  Score=54.93  Aligned_cols=38  Identities=13%  Similarity=-0.080  Sum_probs=32.7

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCC-CeEEEEecCCccccc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQ-RRDELQERGSHLSFR  126 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~-~~V~lie~~~~~~~~  126 (535)
                      .+++|||+|.+|+.+|..+...+ .+|+|+|+.+.+++.
T Consensus        10 ~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~GG~   48 (484)
T 4dsg_A           10 PKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGGL   48 (484)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSSSGG
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCCCCe
Confidence            46799999999999999887776 799999999877554

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=92.44  E-value=0.11  Score=52.80  Aligned_cols=34  Identities=21%  Similarity=0.322  Sum_probs=31.4

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcC
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRL  275 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~  275 (535)
                      .+|+|||+|.+|+.+|..|++.|.+|+++++ +++
T Consensus         4 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~   38 (384)
T 2bi7_A            4 KKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHI   38 (384)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCc
Confidence            4799999999999999999999999999998 655

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=92.37  E-value=0.091  Score=53.16  Aligned_cols=33  Identities=21%  Similarity=0.393  Sum_probs=30.9

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEEcC
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSR  273 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~  273 (535)
                      +.+|+|||+|..|+-+|..|++.|.+|+|+++.
T Consensus        44 ~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~   76 (376)
T 2e1m_A           44 PKRILIVGAGIAGLVAGDLLTRAGHDVTILEAN   76 (376)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHTSCEEEEECSC
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCcEEEEecc
Confidence            568999999999999999999999999999874

>1z3e_A Regulatory protein SPX; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: c.47.1.12 PDB: 3gfk_A 3ihq_A

Probab=92.36  E-value=0.21  Score=42.40  Aligned_cols=33  Identities=12%  Similarity=0.149  Sum_probs=28.2

Q ss_pred             cEEEEeCCCchhhHHHHHHHHHhcCCcceEEEEE
Q psy14461         59 RILIFTHAVLREENARAERYLNARGDRFAVLYLD   92 (535)
Q Consensus        59 ~v~v~~k~~cp~~~~~~k~~~~~~~~~~~~~~v~   92 (535)
                      .|.+|+++.|| +|.+++.++.+.|.+++++++.
T Consensus         2 mi~lY~~~~C~-~C~ka~~~L~~~gi~y~~~di~   34 (132)
T 1z3e_A            2 MVTLYTSPSCT-SCRKARAWLEEHEIPFVERNIF   34 (132)
T ss_dssp             CEEEEECTTCH-HHHHHHHHHHHTTCCEEEEETT
T ss_pred             eEEEEeCCCCh-HHHHHHHHHHHcCCceEEEEcc
Confidence            37789999999 9999999999999887665554

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=92.35  E-value=0.13  Score=53.60  Aligned_cols=56  Identities=9%  Similarity=-0.002  Sum_probs=43.4

Q ss_pred             HHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcE-EEEEecCCCCCceEEEcCEEEEccCCC
Q psy14461        281 QEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMK-GVRGFHPESKEPFADVFKTVVNAMEKK  341 (535)
Q Consensus       281 ~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~-~v~~~~~~~G~~~~~~~D~vi~a~G~~  341 (535)
                      .++.+.+.+.+++.|+++ .++.|++|..++++++ .|++   .+|+  ++.||.||.+.+..
T Consensus       256 ~~L~~aL~r~~~~~Gg~i~l~t~V~~I~~d~~g~v~gV~~---~~G~--~i~Ad~VI~a~~~~  313 (475)
T 3p1w_A          256 GGIPEGFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKS---SDGE--IAYCDKVICDPSYV  313 (475)
T ss_dssp             THHHHHHHHHHHHC--CEESSCCEEEEEECTTSCEEEEEE---TTSC--EEEEEEEEECGGGC
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCeEEEEEEecCCeEEEEEE---CCCc--EEECCEEEECCCcc
Confidence            467788888899999999 9999999987324554 4666   3677  79999999999988

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1

Probab=92.33  E-value=0.13  Score=38.15  Aligned_cols=32  Identities=13%  Similarity=0.274  Sum_probs=26.6

Q ss_pred             cEEEEeCCCchhhHHHHHHHHHhcCCcceEEEE
Q psy14461         59 RILIFTHAVLREENARAERYLNARGDRFAVLYL   91 (535)
Q Consensus        59 ~v~v~~k~~cp~~~~~~k~~~~~~~~~~~~~~v   91 (535)
                      ++.+|+.++|| +|.+++.++.+.+.++..+++
T Consensus         2 ~i~~y~~~~C~-~C~~~~~~l~~~~i~~~~~di   33 (75)
T 1r7h_A            2 SITLYTKPACV-QCTATKKALDRAGLAYNTVDI   33 (75)
T ss_dssp             CEEEEECTTCH-HHHHHHHHHHHTTCCCEEEET
T ss_pred             eEEEEeCCCCh-HHHHHHHHHHHcCCCcEEEEC
Confidence            47789999999 999999999999877655443

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=92.31  E-value=0.076  Score=55.97  Aligned_cols=34  Identities=12%  Similarity=-0.220  Sum_probs=31.1

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSH  122 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~  122 (535)
                      ++|+|||+|.+|+.+|+.+...+.+|+|+|+++.
T Consensus         4 ~DVvIIGgGi~G~~~A~~La~~G~~V~llE~~~~   37 (501)
T 2qcu_A            4 KDLIVIGGGINGAGIAADAAGRGLSVLMLEAQDL   37 (501)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSST
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCCEEEEECCCC
Confidence            5789999999999999999888999999999863

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=92.25  E-value=0.094  Score=53.16  Aligned_cols=33  Identities=12%  Similarity=-0.132  Sum_probs=30.4

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCC
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGS  121 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~  121 (535)
                      .+|+|||+|.+|+.+|+.....+.+|+|+|+.+
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~   34 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRP   34 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCcEEEEeccC
Confidence            368999999999999999999999999999876

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=92.23  E-value=0.082  Score=57.72  Aligned_cols=35  Identities=11%  Similarity=-0.179  Sum_probs=31.6

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHL  123 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~  123 (535)
                      .+|+|||+|.+|+.+|+.+...+.+|+|+||....
T Consensus         6 ~DVvVIGgG~AGL~AAl~aae~G~~V~vlEK~~~~   40 (660)
T 2bs2_A            6 CDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVK   40 (660)
T ss_dssp             CSEEEECCSHHHHHHHHHHHTTTCCEEEECSSCGG
T ss_pred             ccEEEECchHHHHHHHHHHHHCCCcEEEEeccCCC
Confidence            57899999999999999998888999999998743

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=92.22  E-value=0.19  Score=42.92  Aligned_cols=33  Identities=12%  Similarity=0.201  Sum_probs=30.8

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        240 WPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       240 ~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      ..++++|+|.|.+|..+|..|.+.|.+|+++++
T Consensus         6 ~~~~viIiG~G~~G~~la~~L~~~g~~v~vid~   38 (140)
T 3fwz_A            6 ICNHALLVGYGRVGSLLGEKLLASDIPLVVIET   38 (140)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTTCCEEEEES
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEEC
Confidence            457899999999999999999999999999986

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=92.18  E-value=0.078  Score=52.75  Aligned_cols=30  Identities=10%  Similarity=0.249  Sum_probs=28.7

Q ss_pred             cEEEECCChHHHHHHHHHHhCC------CcEEEEEc
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLG------VPVTLVYS  272 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g------~~Vtlv~~  272 (535)
                      +|+|||||.+|+-+|..|++.|      .+|+|+++
T Consensus         2 dVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~   37 (351)
T 3g3e_A            2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYAD   37 (351)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEES
T ss_pred             cEEEECCCHHHHHHHHHHHHhccccCCCceEEEEEC
Confidence            6999999999999999999998      89999998

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=92.16  E-value=0.093  Score=54.19  Aligned_cols=57  Identities=12%  Similarity=-0.024  Sum_probs=44.3

Q ss_pred             HHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCC
Q psy14461        281 QEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFD  343 (535)
Q Consensus       281 ~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~  343 (535)
                      ..+.+.+.+.+++.|+++ +++.|++|... ++++.....   +|+  ++.+|.||+++|..+.
T Consensus       234 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~-~~~v~~v~~---~g~--~~~ad~VV~a~~~~~~  291 (433)
T 1d5t_A          234 GELPQGFARLSAIYGGTYMLNKPVDDIIME-NGKVVGVKS---EGE--VARCKQLICDPSYVPD  291 (433)
T ss_dssp             THHHHHHHHHHHHHTCCCBCSCCCCEEEEE-TTEEEEEEE---TTE--EEECSEEEECGGGCGG
T ss_pred             HHHHHHHHHHHHHcCCEEECCCEEEEEEEe-CCEEEEEEE---CCe--EEECCEEEECCCCCcc
Confidence            367777778788889999 99999999876 455543332   676  7999999999998764

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=92.15  E-value=0.11  Score=54.63  Aligned_cols=35  Identities=20%  Similarity=0.332  Sum_probs=32.2

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcC
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRL  275 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~  275 (535)
                      ..+|+|||+|..|+-+|..|++.|.+|+|+++ +++
T Consensus        13 ~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~   48 (504)
T 1sez_A           13 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKA   48 (504)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCC
Confidence            46899999999999999999999999999998 665

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=92.14  E-value=0.085  Score=57.49  Aligned_cols=35  Identities=11%  Similarity=-0.070  Sum_probs=30.9

Q ss_pred             EEEEEeeCCccHHHHHHHHHh---h-CCCeEEEEecCCc
Q psy14461         88 VLYLDRIGDEGILLEEELKRQ---T-NQRRDELQERGSH  122 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~---~-~~~~V~lie~~~~  122 (535)
                      ..+|+|||+|++|+.+|+.+.   . .+.+|+|+||...
T Consensus        22 ~~DVvVIG~G~AGl~AAl~aa~~~~~~G~~V~vlEK~~~   60 (643)
T 1jnr_A           22 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAV   60 (643)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCT
T ss_pred             cCCEEEECcCHHHHHHHHHHhhhhhhCCCeEEEEeCcCC
Confidence            358999999999999999887   5 6899999999874

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=92.05  E-value=0.25  Score=52.99  Aligned_cols=57  Identities=18%  Similarity=0.095  Sum_probs=39.9

Q ss_pred             HHHHHhhhcCCeEE-cceEEEEEEEeC---CCcE-EEEEecCCCCCceEEEcC-EEEEccCCCC
Q psy14461        285 RILLSSLTKAGVSI-QCCVIEKVISSF---DGMK-GVRGFHPESKEPFADVFK-TVVNAMEKKF  342 (535)
Q Consensus       285 ~~~~~~l~~~gV~i-~~~~v~~i~~~~---~~~~-~v~~~~~~~G~~~~~~~D-~vi~a~G~~p  342 (535)
                      .++...+++.++++ +++.|++|.-++   +++. -|++.. .+|+..++.+. -||+|.|.--
T Consensus       231 ayL~p~~~r~NL~V~t~a~V~rIl~d~~~~~~ra~GV~~~~-~~G~~~~v~A~kEVILsAGa~~  293 (583)
T 3qvp_A          231 EWLLPNYQRPNLQVLTGQYVGKVLLSQNGTTPRAVGVEFGT-HKGNTHNVYAKHEVLLAAGSAV  293 (583)
T ss_dssp             HHTTTTTTCTTEEEECSCEEEEEEEECSSSSCEEEEEEEES-STTCEEEEEEEEEEEECSCTTT
T ss_pred             HHHHHhhcCCCcEEEcCCEEEEEEeccCCCCCEEEEEEEEe-cCCcEEEEEECCEEEEeCCccC
Confidence            34444556789999 999999997652   2333 366652 26777788887 6999999653

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=92.02  E-value=0.13  Score=56.35  Aligned_cols=37  Identities=16%  Similarity=-0.100  Sum_probs=33.4

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSF  125 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~  125 (535)
                      .+|+|||+|++|+++|..+...+.+|+|+|+.+.+++
T Consensus       108 ~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg  144 (662)
T 2z3y_A          108 GKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG  144 (662)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBT
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCC
Confidence            5789999999999999998888999999999987654

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=92.00  E-value=0.19  Score=43.48  Aligned_cols=32  Identities=28%  Similarity=0.380  Sum_probs=30.0

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      .++++|+|+|.+|..+|..|.+.|.+|+++++
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~   34 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQNVTVISN   34 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEEC
Confidence            46899999999999999999999999999986

>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A

Probab=91.98  E-value=0.14  Score=39.95  Aligned_cols=38  Identities=8%  Similarity=-0.044  Sum_probs=29.6

Q ss_pred             cEEEEeCCCchhhHHHHHHHHHhcCCcceEEEEEeeCCccH
Q psy14461         59 RILIFTHAVLREENARAERYLNARGDRFAVLYLDRIGDEGI   99 (535)
Q Consensus        59 ~v~v~~k~~cp~~~~~~k~~~~~~~~~~~~~~v~iiG~G~a   99 (535)
                      +|++|++++|| +|..++.++.+.+.++ +.+++|-.. +.
T Consensus         2 ~vv~f~a~~C~-~C~~~~~~L~~~~~~~-~~~vdid~~-~~   39 (87)
T 1ttz_A            2 ALTLYQRDDCH-LCDQAVEALAQARAGA-FFSVFIDDD-AA   39 (87)
T ss_dssp             CEEEEECSSCH-HHHHHHHHHHHTTCCC-EEEEECTTC-HH
T ss_pred             EEEEEECCCCc-hHHHHHHHHHHHHHhh-eEEEECCCC-HH
Confidence            47899999999 9999999999988763 355665543 44

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=91.89  E-value=0.13  Score=52.49  Aligned_cols=34  Identities=21%  Similarity=0.242  Sum_probs=31.3

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcC
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRL  275 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~  275 (535)
                      .+|+|||||..|+-+|..|++.|.+|+++++ +++
T Consensus        30 ~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~   64 (397)
T 3hdq_A           30 FDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHI   64 (397)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCceEEEeccCCC
Confidence            4799999999999999999999999999998 654

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=91.80  E-value=0.086  Score=57.54  Aligned_cols=35  Identities=11%  Similarity=-0.043  Sum_probs=30.6

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhC------CCeEEEEecCCc
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTN------QRRDELQERGSH  122 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~------~~~V~lie~~~~  122 (535)
                      ..+|+|||+|.+|+.+|+.+...      +.+|+|+||...
T Consensus        22 ~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~~~   62 (662)
T 3gyx_A           22 SVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKASL   62 (662)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSSCT
T ss_pred             EcCEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEecCC
Confidence            36799999999999999988765      889999999763

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=91.78  E-value=0.089  Score=54.33  Aligned_cols=34  Identities=18%  Similarity=0.160  Sum_probs=31.0

Q ss_pred             CcEEEECCChHHHHHHHHHHhCC-CcEEEEEc-CcC
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLG-VPVTLVYS-RRL  275 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g-~~Vtlv~~-~~~  275 (535)
                      .+|+|||||.+|+-+|..|+++| .+|+|+++ ..+
T Consensus        24 ~dVvIIGgGiaGls~A~~La~~G~~~V~vlE~~~~~   59 (448)
T 3axb_A           24 FDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDAGHAP   59 (448)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHCSCEEEEESSSST
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCCcEEEEccCCCC
Confidence            47999999999999999999999 99999998 544

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=91.72  E-value=0.2  Score=42.56  Aligned_cols=31  Identities=23%  Similarity=0.236  Sum_probs=29.6

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      ++++|+|+|.+|..+|..|.+.|.+|+++++
T Consensus         7 ~~v~I~G~G~iG~~la~~L~~~g~~V~~id~   37 (141)
T 3llv_A            7 YEYIVIGSEAAGVGLVRELTAAGKKVLAVDK   37 (141)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEES
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEEC
Confidence            6899999999999999999999999999986

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=91.72  E-value=0.14  Score=57.45  Aligned_cols=38  Identities=18%  Similarity=-0.056  Sum_probs=34.1

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFR  126 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~  126 (535)
                      .+|+|||+|++|+++|..+...+.+|+|+|+.+.+++.
T Consensus       279 ~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~~~GG~  316 (852)
T 2xag_A          279 GKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGR  316 (852)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCcEEEEEecCcCCCc
Confidence            58899999999999999998899999999999876543

>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A

Probab=91.68  E-value=0.14  Score=42.61  Aligned_cols=45  Identities=9%  Similarity=0.047  Sum_probs=33.0

Q ss_pred             EEEEeCCCchhhH------HHHHHHHHhcCCcceEEEEEeeCCccHHHHHHHHHhh
Q psy14461         60 ILIFTHAVLREEN------ARAERYLNARGDRFAVLYLDRIGDEGILLEEELKRQT  109 (535)
Q Consensus        60 v~v~~k~~cp~~~------~~~k~~~~~~~~~~~~~~v~iiG~G~aG~~~al~~~~  109 (535)
                      |.||+.+.|| +|      .+++.+|.+.+..++.++  |-.. +. ....++...
T Consensus         2 V~vYtt~~c~-~c~~kk~c~~aK~lL~~kgV~feEid--I~~d-~~-~r~eM~~~~   52 (121)
T 1u6t_A            2 IRVYIASSSG-STAIKKKQQDVLGFLEANKIGFEEKD--IAAN-EE-NRKWMRENV   52 (121)
T ss_dssp             EEEEECTTCS-CHHHHHHHHHHHHHHHHTTCCEEEEE--CTTC-HH-HHHHHHHHS
T ss_pred             EEEEecCCCC-CccchHHHHHHHHHHHHCCCceEEEE--CCCC-HH-HHHHHHHhc
Confidence            7889999999 98      799999999998775544  4333 44 555555544

>2kok_A Arsenate reductase; brucellosis, zoonotic, oxidoreductase, S genomics, seattle structural genomics center for infectious ssgcid; NMR {Brucella abortus}

Probab=91.59  E-value=0.14  Score=42.58  Aligned_cols=33  Identities=12%  Similarity=0.172  Sum_probs=28.4

Q ss_pred             cEEEEeCCCchhhHHHHHHHHHhcCCcceEEEEE
Q psy14461         59 RILIFTHAVLREENARAERYLNARGDRFAVLYLD   92 (535)
Q Consensus        59 ~v~v~~k~~cp~~~~~~k~~~~~~~~~~~~~~v~   92 (535)
                      .|.+|+++.|| +|.++++++.+.|..++.+++.
T Consensus         6 ~i~iY~~~~C~-~C~ka~~~L~~~gi~y~~~di~   38 (120)
T 2kok_A            6 SVTIYGIKNCD-TMKKARIWLEDHGIDYTFHDYK   38 (120)
T ss_dssp             CEEEEECSSCH-HHHHHHHHHHHHTCCEEEEEHH
T ss_pred             EEEEEECCCCh-HHHHHHHHHHHcCCcEEEEeee
Confidence            47899999999 9999999999999887666544

>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12

Probab=91.53  E-value=0.16  Score=42.36  Aligned_cols=32  Identities=16%  Similarity=0.199  Sum_probs=27.3

Q ss_pred             EEEEeCCCchhhHHHHHHHHHhcCCcceEEEEE
Q psy14461         60 ILIFTHAVLREENARAERYLNARGDRFAVLYLD   92 (535)
Q Consensus        60 v~v~~k~~cp~~~~~~k~~~~~~~~~~~~~~v~   92 (535)
                      |.+|+++.|| +|.++++++.+.|..++++++.
T Consensus         2 i~iY~~~~C~-~c~ka~~~L~~~gi~~~~~di~   33 (120)
T 3l78_A            2 VTLFLSPSCT-SCRKARAWLNRHDVVFQEHNIM   33 (120)
T ss_dssp             EEEEECSSCH-HHHHHHHHHHHTTCCEEEEETT
T ss_pred             EEEEeCCCCH-HHHHHHHHHHHcCCCeEEEecc
Confidence            6789999999 9999999999999887655544

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=91.52  E-value=0.12  Score=55.32  Aligned_cols=61  Identities=15%  Similarity=0.062  Sum_probs=44.0

Q ss_pred             cHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcE-EEEEecCCCCCceEEEcCEEEEccCCC
Q psy14461        280 DQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMK-GVRGFHPESKEPFADVFKTVVNAMEKK  341 (535)
Q Consensus       280 ~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~-~v~~~~~~~G~~~~~~~D~vi~a~G~~  341 (535)
                      +..+...+.+.+.+.|+++ .+++|+++..+ ++.+ .|++.+..+|+..++.+|.||+|+|.-
T Consensus       187 ~~~l~~~l~~~a~~~Ga~i~~~t~V~~l~~~-~~~v~gV~~~d~~tg~~~~i~A~~VV~AaG~w  249 (571)
T 2rgh_A          187 DARLVIDNIKKAAEDGAYLVSKMKAVGFLYE-GDQIVGVKARDLLTDEVIEIKAKLVINTSGPW  249 (571)
T ss_dssp             HHHHHHHHHHHHHHTTCEEESSEEEEEEEEE-TTEEEEEEEEETTTCCEEEEEBSCEEECCGGG
T ss_pred             hHHHHHHHHHHHHHcCCeEEeccEEEEEEEe-CCEEEEEEEEEcCCCCEEEEEcCEEEECCChh
Confidence            3455566667778889999 99999999876 4443 466543224554479999999999953

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=91.50  E-value=0.13  Score=53.78  Aligned_cols=34  Identities=21%  Similarity=0.385  Sum_probs=31.6

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcC
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRL  275 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~  275 (535)
                      .+|+|||+|..|+-+|..|++.|.+|+|+++ +++
T Consensus        40 ~~v~iiGaG~aGl~aA~~l~~~g~~v~v~E~~~~~   74 (495)
T 2vvm_A           40 WDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRI   74 (495)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSBS
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            5799999999999999999999999999998 655

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=91.44  E-value=0.12  Score=52.58  Aligned_cols=34  Identities=15%  Similarity=0.209  Sum_probs=31.2

Q ss_pred             CcEEEECCChHHHHHHHHHHhC-CCcEEEEEc-CcC
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFL-GVPVTLVYS-RRL  275 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~-g~~Vtlv~~-~~~  275 (535)
                      .+|+|||+|..|+-+|..|++. |.+|+|+++ +++
T Consensus         8 ~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~   43 (399)
T 1v0j_A            8 FDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHI   43 (399)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence            5799999999999999999998 999999998 654

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=91.43  E-value=0.14  Score=47.76  Aligned_cols=34  Identities=24%  Similarity=0.242  Sum_probs=31.1

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        239 AWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       239 ~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      -.+++|+|||||.+|...+..|.+.|++|+++.+
T Consensus        29 L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap   62 (223)
T 3dfz_A           29 LKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAP   62 (223)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECS
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECC
Confidence            3468999999999999999999999999999974

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=91.03  E-value=0.17  Score=47.49  Aligned_cols=53  Identities=21%  Similarity=0.266  Sum_probs=37.9

Q ss_pred             hcCCcEEEEeCCCchhhHHHHHHHHHhcCCcceEEEEEeeCCccHHHHHHHHHhhCCCe
Q psy14461         55 SYENRILIFTHAVLREENARAERYLNARGDRFAVLYLDRIGDEGILLEEELKRQTNQRR  113 (535)
Q Consensus        55 i~~~~v~v~~k~~cp~~~~~~k~~~~~~~~~~~~~~v~iiG~G~aG~~~al~~~~~~~~  113 (535)
                      +...++.+|++++|| +|.+++.++.+.+.+++.++|.  .. +.  ...+....+..+
T Consensus       167 i~~~~i~ly~~~~Cp-~C~~a~~~L~~~~i~~~~~~i~--~~-~~--~~~l~~~~g~~~  219 (241)
T 1nm3_A          167 QVQESISIFTKPGCP-FCAKAKQLLHDKGLSFEEIILG--HD-AT--IVSVRAVSGRTT  219 (241)
T ss_dssp             CCCCCEEEEECSSCH-HHHHHHHHHHHHTCCCEEEETT--TT-CC--HHHHHHHTCCSS
T ss_pred             cccceEEEEECCCCh-HHHHHHHHHHHcCCceEEEECC--Cc-hH--HHHHHHHhCCCC
Confidence            456789999999999 9999999999999887655543  22 33  245555454433

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=90.97  E-value=0.17  Score=52.73  Aligned_cols=38  Identities=11%  Similarity=-0.052  Sum_probs=32.6

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCC-eEEEEecCCccccc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQR-RDELQERGSHLSFR  126 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~-~V~lie~~~~~~~~  126 (535)
                      .+|+|||+|.+|+.+|..+...+. +|+|+|+.+.+++.
T Consensus         5 ~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~~~gg~   43 (472)
T 1b37_A            5 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGR   43 (472)
T ss_dssp             CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCCCCCCc
Confidence            467999999999999998888887 89999999876543

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=90.94  E-value=0.13  Score=53.46  Aligned_cols=34  Identities=21%  Similarity=0.320  Sum_probs=31.2

Q ss_pred             CcEEEECCChHHHHHHHHHHhCC--CcEEEEEc-CcC
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLG--VPVTLVYS-RRL  275 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g--~~Vtlv~~-~~~  275 (535)
                      .+|+|||||.+|+-+|..|++.|  .+|+++++ +.+
T Consensus         5 ~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~   41 (475)
T 3lov_A            5 KRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERL   41 (475)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSS
T ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCCC
Confidence            57999999999999999999999  99999998 653

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=90.90  E-value=0.15  Score=51.39  Aligned_cols=33  Identities=18%  Similarity=0.311  Sum_probs=30.4

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcC
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRL  275 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~  275 (535)
                      +++|||+|..|+-+|..|++.|.+|+++++ +++
T Consensus         3 ~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~   36 (367)
T 1i8t_A            3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHI   36 (367)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence            689999999999999999999999999998 654

>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}

Probab=90.89  E-value=0.09  Score=40.01  Aligned_cols=34  Identities=21%  Similarity=0.138  Sum_probs=23.5

Q ss_pred             CcEEEEeCCCchhhHHHHHHHHH----hcCCcceEEEEE
Q psy14461         58 NRILIFTHAVLREENARAERYLN----ARGDRFAVLYLD   92 (535)
Q Consensus        58 ~~v~v~~k~~cp~~~~~~k~~~~----~~~~~~~~~~v~   92 (535)
                      .++.+|.+++|| +|.+++..+.    +.+.++.+++++
T Consensus         2 ~~~~~f~~~~C~-~C~~~~~~l~~~~~~~~~~~~~~~v~   39 (80)
T 2k8s_A            2 ASKAIFYHAGCP-VCVSAEQAVANAIDPSKYTVEIVHLG   39 (80)
T ss_dssp             CEEEEEEECSCH-HHHHHHHHHHHHSCTTTEEEEEEETT
T ss_pred             cceEEEeCCCCC-chHHHHHHHHHHHHhcCCeEEEEEec
Confidence            358889999999 9999999444    444444444443

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=90.86  E-value=0.26  Score=41.45  Aligned_cols=31  Identities=16%  Similarity=0.157  Sum_probs=29.1

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      .+++|+|+|.+|..+|..|.+.|.+|+++++
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~   35 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDI   35 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEC
Confidence            4799999999999999999999999999986

>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=90.82  E-value=0.23  Score=39.78  Aligned_cols=37  Identities=24%  Similarity=0.218  Sum_probs=28.3

Q ss_pred             CCcEEEEeCCCchhhHHHHHHHHHhcCCcceEEEEEee
Q psy14461         57 ENRILIFTHAVLREENARAERYLNARGDRFAVLYLDRI   94 (535)
Q Consensus        57 ~~~v~v~~k~~cp~~~~~~k~~~~~~~~~~~~~~v~ii   94 (535)
                      ...|++|++.+|| +|.+++.++.+....+.+..++|-
T Consensus        16 ~~~v~~f~~~~C~-~C~~~~~~L~~l~~~i~~~~vdi~   52 (100)
T 1wjk_A           16 LPVLTLFTKAPCP-LCDEAKEVLQPYKDRFILQEVDIT   52 (100)
T ss_dssp             CCEEEEEECSSCH-HHHHHHHHTSTTSSSSEEEEEETT
T ss_pred             CCEEEEEeCCCCc-chHHHHHHHHHhhhCCeEEEEECC
Confidence            3457789999999 999999999865444556666664

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A

Probab=90.68  E-value=0.16  Score=38.84  Aligned_cols=22  Identities=18%  Similarity=0.176  Sum_probs=19.8

Q ss_pred             cEEEEeCCCchhhHHHHHHHHHh
Q psy14461         59 RILIFTHAVLREENARAERYLNA   81 (535)
Q Consensus        59 ~v~v~~k~~cp~~~~~~k~~~~~   81 (535)
                      +|++|++++|| +|.+++.++.+
T Consensus         2 ~v~~f~~~~C~-~C~~~~~~l~~   23 (85)
T 1ego_A            2 QTVIFGRSGCP-YCVRAKDLAEK   23 (85)
T ss_dssp             EEEEECCTTST-HHHHHHHHHHH
T ss_pred             EEEEEeCCCCC-CHHHHHHHHHH
Confidence            47889999999 99999999986

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=90.66  E-value=0.18  Score=56.06  Aligned_cols=37  Identities=11%  Similarity=-0.074  Sum_probs=33.3

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSF  125 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~  125 (535)
                      .+|+|||+|.+|+++|..+...+.+|+|+|+.+.+++
T Consensus       337 ~~v~viG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~gg  373 (776)
T 4gut_A          337 KSVIIIGAGPAGLAAARQLHNFGIKVTVLEAKDRIGG  373 (776)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCT
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCcEEEEecccceec
Confidence            6899999999999999988888999999999887654

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=90.62  E-value=0.21  Score=56.12  Aligned_cols=35  Identities=29%  Similarity=0.497  Sum_probs=31.8

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-Cc
Q psy14461        240 WPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RR  274 (535)
Q Consensus       240 ~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~  274 (535)
                      ..++|+|||+|..|+.+|..|++.|.+|+|+++ +.
T Consensus       277 ~~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~~  312 (852)
T 2xag_A          277 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDR  312 (852)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEecCc
Confidence            357899999999999999999999999999987 54

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=90.59  E-value=0.2  Score=54.77  Aligned_cols=35  Identities=29%  Similarity=0.497  Sum_probs=31.9

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-Cc
Q psy14461        240 WPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RR  274 (535)
Q Consensus       240 ~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~  274 (535)
                      ..++|+|||+|..|+.+|..|.+.|.+|+++++ +.
T Consensus       106 ~~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~~  141 (662)
T 2z3y_A          106 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDR  141 (662)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            357899999999999999999999999999987 54

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=90.59  E-value=0.26  Score=41.59  Aligned_cols=32  Identities=22%  Similarity=0.147  Sum_probs=29.7

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      .++++|+|+|.+|..+|..|.+.|.+|+++++
T Consensus         6 ~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~   37 (144)
T 2hmt_A            6 NKQFAVIGLGRFGGSIVKELHRMGHEVLAVDI   37 (144)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCCEEEES
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence            36799999999999999999999999999986

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=90.50  E-value=0.26  Score=51.66  Aligned_cols=35  Identities=20%  Similarity=0.189  Sum_probs=31.7

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCC-CcEEEEEc-CcC
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLG-VPVTLVYS-RRL  275 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g-~~Vtlv~~-~~~  275 (535)
                      ..+|+|||||..|+-+|..|++.| .+|+++++ +.+
T Consensus         9 ~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~   45 (484)
T 4dsg_A            9 TPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTP   45 (484)
T ss_dssp             SCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCC
Confidence            468999999999999999999998 79999998 654

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=90.41  E-value=0.21  Score=40.52  Aligned_cols=32  Identities=25%  Similarity=0.173  Sum_probs=29.4

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCC-CcEEEEEc
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLG-VPVTLVYS  272 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g-~~Vtlv~~  272 (535)
                      .++++|+|+|.+|..++..|.+.| .+|+++.+
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r   37 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADH   37 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEES
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeC
Confidence            368999999999999999999999 89999887

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=90.40  E-value=0.2  Score=52.84  Aligned_cols=35  Identities=14%  Similarity=-0.016  Sum_probs=30.6

Q ss_pred             EEEEEeeCCccHHHHHHHHHhh-CCCeEEEEecCCc
Q psy14461         88 VLYLDRIGDEGILLEEELKRQT-NQRRDELQERGSH  122 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~-~~~~V~lie~~~~  122 (535)
                      .+|++|||+|.+|...|.++.. .+.+|+|+|++..
T Consensus        17 ~yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG~~   52 (526)
T 3t37_A           17 NCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEE   52 (526)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSBC
T ss_pred             CeeEEEECccHHHHHHHHHHHhCCCCeEEEEcCCCC
Confidence            3789999999999999988865 6789999999974

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=90.35  E-value=0.22  Score=40.54  Aligned_cols=36  Identities=6%  Similarity=0.028  Sum_probs=27.0

Q ss_pred             CcEEEEeCCCchhhHHHHHHHHHh----cCCcceEEEEEeeCC
Q psy14461         58 NRILIFTHAVLREENARAERYLNA----RGDRFAVLYLDRIGD   96 (535)
Q Consensus        58 ~~v~v~~k~~cp~~~~~~k~~~~~----~~~~~~~~~v~iiG~   96 (535)
                      ..|++|++.+|| +|.+++.++.+    .+.++  .+++|-..
T Consensus        30 ~~vv~y~~~~C~-~C~~a~~~L~~l~~e~~i~~--~~vDId~d   69 (107)
T 2fgx_A           30 RKLVVYGREGCH-LCEEMIASLRVLQKKSWFEL--EVINIDGN   69 (107)
T ss_dssp             CCEEEEECSSCH-HHHHHHHHHHHHHHHSCCCC--EEEETTTC
T ss_pred             cEEEEEeCCCCh-hHHHHHHHHHHHHHhcCCeE--EEEECCCC
Confidence            358899999999 99999999987    56444  45555433

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=90.16  E-value=0.23  Score=52.90  Aligned_cols=36  Identities=14%  Similarity=-0.026  Sum_probs=32.1

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcc
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHL  123 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~  123 (535)
                      .++++|||+|++|+.+|.++...+.+|+|+|++...
T Consensus         7 ~~D~iIvG~G~aG~~~A~~L~~~g~~VlvlE~g~~~   42 (546)
T 1kdg_A            7 PYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGPS   42 (546)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC
T ss_pred             ceeEEEECcCHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence            378999999999999999888889999999998743

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=90.13  E-value=0.18  Score=48.57  Aligned_cols=33  Identities=24%  Similarity=0.276  Sum_probs=31.1

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        240 WPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       240 ~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      .+++|+|||||.+|...+..|.+.|++|+++.+
T Consensus        12 ~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap   44 (274)
T 1kyq_A           12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSP   44 (274)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcC
Confidence            468999999999999999999999999999986

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=89.85  E-value=0.24  Score=52.57  Aligned_cols=35  Identities=14%  Similarity=-0.024  Sum_probs=31.6

Q ss_pred             eEEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCc
Q psy14461         87 AVLYLDRIGDEGILLEEELKRQTNQRRDELQERGSH  122 (535)
Q Consensus        87 ~~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~  122 (535)
                      ..+|++|||+|.+|+..|.++.. +.+|+|+|++..
T Consensus        25 ~~yD~IIVGsG~AG~v~A~rLse-g~~VlvLEaG~~   59 (536)
T 1ju2_A           25 GSYDYVIVGGGTSGCPLAATLSE-KYKVLVLERGSL   59 (536)
T ss_dssp             EEEEEEEECCSTTHHHHHHHHTT-TSCEEEECSSBC
T ss_pred             CcccEEEECccHHHHHHHHHHhc-CCcEEEEecCCC
Confidence            35799999999999999999888 899999999974

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=89.58  E-value=0.22  Score=49.07  Aligned_cols=32  Identities=25%  Similarity=0.301  Sum_probs=29.8

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      .++|.|||+|.+|.-+|..++..|.+|++++.
T Consensus         6 ~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~   37 (319)
T 3ado_A            6 AGDVLIVGSGLVGRSWAMLFASGGFRVKLYDI   37 (319)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCCEEEECS
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCeEEEEEC
Confidence            46899999999999999999999999999987

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=89.38  E-value=0.69  Score=47.88  Aligned_cols=125  Identities=12%  Similarity=-0.067  Sum_probs=76.8

Q ss_pred             EEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHHHH
Q psy14461         90 YLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRFCI  169 (535)
Q Consensus        90 ~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  169 (535)
                      ++.++|.|++|+++|..+...+.+|+++|.....      .       +                  .            
T Consensus        11 ~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~~------~-------~------------------~------------   47 (451)
T 3lk7_A           11 KVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFD------E-------N------------------P------------   47 (451)
T ss_dssp             EEEEECCTTTHHHHHHHHHHTTCEEEEEESSCGG------G-------C------------------H------------
T ss_pred             EEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCccc------C-------C------------------h------------
Confidence            5699999999999998888899999999986521      0       0                  0            


Q ss_pred             HHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEceeEEE-cceEEEeeCceecC-CCC-----CCceechhhHHhccCCCC
Q psy14461        170 RAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSNRSVT-GFNFLLAVERRCLP-EPR-----NSALISADDLFRLGAWPG  242 (535)
Q Consensus       170 ~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~~~~~-~d~lViATGs~p~~-~i~-----G~~v~~~~~~~~~~~~~k  242 (535)
                           ..+.+++.||++..|..    ..     ...-. +|.||+++|..+.. .+.     |-.+++-.+++......+
T Consensus        48 -----~~~~L~~~gi~~~~g~~----~~-----~~~~~~~d~vv~spgi~~~~p~~~~a~~~gi~v~~~~e~~~~~~~~~  113 (451)
T 3lk7_A           48 -----TAQSLLEEGIKVVCGSH----PL-----ELLDEDFCYMIKNPGIPYNNPMVKKALEKQIPVLTEVELAYLVSESQ  113 (451)
T ss_dssp             -----HHHHHHHTTCEEEESCC----CG-----GGGGSCEEEEEECTTSCTTSHHHHHHHHTTCCEECHHHHHHHHCCSE
T ss_pred             -----HHHHHHhCCCEEEECCC----hH-----HhhcCCCCEEEECCcCCCCChhHHHHHHCCCcEEeHHHHHHHhcCCC
Confidence                 01345667999877641    10     00012 89999999986644 221     134566656554222223


Q ss_pred             cEEEECC-Ch--HHHHHHHHHHhCCCcEEEEE
Q psy14461        243 KTLVLGG-SL--MAVEIAATLNFLGVPVTLVY  271 (535)
Q Consensus       243 ~vvViGg-G~--~g~e~A~~l~~~g~~Vtlv~  271 (535)
                      -|.|-|. |-  +..-++..|...|.++.+..
T Consensus       114 ~IaVTGTnGKTTTt~ml~~iL~~~g~~~~~~G  145 (451)
T 3lk7_A          114 LIGITGSNGKTTTTTMIAEVLNAGGQRGLLAG  145 (451)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHHhcCCCEEEee
Confidence            4445553 22  34456777888887775443

>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0

Probab=89.09  E-value=0.3  Score=40.70  Aligned_cols=32  Identities=9%  Similarity=0.144  Sum_probs=27.4

Q ss_pred             EEEEeCCCchhhHHHHHHHHHhcCCcceEEEEE
Q psy14461         60 ILIFTHAVLREENARAERYLNARGDRFAVLYLD   92 (535)
Q Consensus        60 v~v~~k~~cp~~~~~~k~~~~~~~~~~~~~~v~   92 (535)
                      |.+|..+.|| +|.++++++.+.|..++.+++.
T Consensus         6 i~iY~~p~C~-~c~ka~~~L~~~gi~~~~~di~   37 (120)
T 3gkx_A            6 TLFLQYPACS-TCQKAKKWLIENNIEYTNRLIV   37 (120)
T ss_dssp             CEEEECTTCH-HHHHHHHHHHHTTCCCEEEETT
T ss_pred             EEEEECCCCh-HHHHHHHHHHHcCCceEEEecc
Confidence            6789999999 9999999999999887655543

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=88.84  E-value=0.34  Score=49.92  Aligned_cols=35  Identities=17%  Similarity=0.134  Sum_probs=31.8

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL  276 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l  276 (535)
                      .+|+|||+|..|+-+|..|++.|.+|+++++ +.+.
T Consensus         7 ~~v~iiG~G~~gl~~a~~l~~~g~~v~~~e~~~~~g   42 (433)
T 1d5t_A            7 YDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYG   42 (433)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCcc
Confidence            5799999999999999999999999999998 6543

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=88.83  E-value=0.95  Score=44.58  Aligned_cols=122  Identities=14%  Similarity=0.028  Sum_probs=73.4

Q ss_pred             EEEEeeCCccHHHH-HHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHH
Q psy14461         89 LYLDRIGDEGILLE-EELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRF  167 (535)
Q Consensus        89 ~~v~iiG~G~aG~~-~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  167 (535)
                      .++.+||-|++|++ .|..+...+.+|++.|+....        .                        .          
T Consensus         5 ~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~~--------~------------------------~----------   42 (326)
T 3eag_A            5 KHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMYP--------P------------------------M----------   42 (326)
T ss_dssp             CEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCCT--------T------------------------H----------
T ss_pred             cEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCCc--------H------------------------H----------
Confidence            46799999999996 666777889999999986521        0                        0          


Q ss_pred             HHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEceeE-EEcceEEEeeCceecC-CCC-----CCceechhhHHhc--c
Q psy14461        168 CIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSNRS-VTGFNFLLAVERRCLP-EPR-----NSALISADDLFRL--G  238 (535)
Q Consensus       168 ~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~~~-~~~d~lViATGs~p~~-~i~-----G~~v~~~~~~~~~--~  238 (535)
                              .+.+++.||++..|.    +..     ... ..+|.||+.+|..|.. .+.     |-.+++-.+++..  .
T Consensus        43 --------~~~L~~~gi~v~~g~----~~~-----~l~~~~~d~vV~Spgi~~~~p~~~~a~~~gi~v~~~~e~~~~~~~  105 (326)
T 3eag_A           43 --------STQLEALGIDVYEGF----DAA-----QLDEFKADVYVIGNVAKRGMDVVEAILNLGLPYISGPQWLSENVL  105 (326)
T ss_dssp             --------HHHHHHTTCEEEESC----CGG-----GGGSCCCSEEEECTTCCTTCHHHHHHHHTTCCEEEHHHHHHHHTG
T ss_pred             --------HHHHHhCCCEEECCC----CHH-----HcCCCCCCEEEECCCcCCCCHHHHHHHHcCCcEEeHHHHHHHHHh
Confidence                    133566799877653    111     011 2489999999976543 221     2235555554431  1


Q ss_pred             CCCCcEEEECC-Ch--HHHHHHHHHHhCCCcEEE
Q psy14461        239 AWPGKTLVLGG-SL--MAVEIAATLNFLGVPVTL  269 (535)
Q Consensus       239 ~~~k~vvViGg-G~--~g~e~A~~l~~~g~~Vtl  269 (535)
                      ...+-|.|-|. |-  +..-++..|...|.++.+
T Consensus       106 ~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~~~  139 (326)
T 3eag_A          106 HHHWVLGVAGTHGKTTTASMLAWVLEYAGLAPGF  139 (326)
T ss_dssp             GGSEEEEEESSSCHHHHHHHHHHHHHHTTCCCEE
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHHHcCCCceE
Confidence            21233445453 22  344566777888877654

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=88.73  E-value=0.34  Score=50.50  Aligned_cols=34  Identities=15%  Similarity=0.234  Sum_probs=31.6

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL  276 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l  276 (535)
                      +|+|||+|..|+-+|..|++.|.+|.++++ +.+.
T Consensus        22 dv~iiG~G~~g~~~a~~l~~~g~~v~~~e~~~~~G   56 (475)
T 3p1w_A           22 DVIILGTGLKECILSGLLSHYGKKILVLDRNPYYG   56 (475)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEeccCCCC
Confidence            799999999999999999999999999999 6654

>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0

Probab=88.48  E-value=0.37  Score=40.07  Aligned_cols=33  Identities=9%  Similarity=0.102  Sum_probs=27.4

Q ss_pred             cEEEEeCCCchhhHHHHHHHHHhcCCcceEEEEE
Q psy14461         59 RILIFTHAVLREENARAERYLNARGDRFAVLYLD   92 (535)
Q Consensus        59 ~v~v~~k~~cp~~~~~~k~~~~~~~~~~~~~~v~   92 (535)
                      .+.+|..+.|| +|.++++++.+.|..++.+++.
T Consensus         4 Mi~iY~~~~C~-~c~ka~~~L~~~gi~~~~~di~   36 (120)
T 3fz4_A            4 MLTFYEYPKCS-TCRRAKAELDDLAWDYDAIDIK   36 (120)
T ss_dssp             SEEEEECSSCH-HHHHHHHHHHHHTCCEEEEETT
T ss_pred             eEEEEeCCCCh-HHHHHHHHHHHcCCceEEEEec
Confidence            36789999999 9999999999999887555443

>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}

Probab=88.28  E-value=0.27  Score=41.01  Aligned_cols=33  Identities=9%  Similarity=0.113  Sum_probs=27.6

Q ss_pred             cEEEEeCCCchhhHHHHHHHHHhcCCcceEEEEE
Q psy14461         59 RILIFTHAVLREENARAERYLNARGDRFAVLYLD   92 (535)
Q Consensus        59 ~v~v~~k~~cp~~~~~~k~~~~~~~~~~~~~~v~   92 (535)
                      .|.+|..+.|| +|.++++++.+.|..++.+++.
T Consensus         6 ~i~iY~~p~C~-~c~ka~~~L~~~gi~~~~~di~   38 (121)
T 3rdw_A            6 DVTIYHNPRCS-KSRETLALVEQQGITPQVVLYL   38 (121)
T ss_dssp             CCEEECCTTCH-HHHHHHHHHHTTTCCCEEECTT
T ss_pred             cEEEEECCCCH-HHHHHHHHHHHcCCCcEEEeec
Confidence            37789999999 9999999999999887654443

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=88.17  E-value=0.44  Score=42.43  Aligned_cols=32  Identities=16%  Similarity=0.066  Sum_probs=29.9

Q ss_pred             CCcEEEECCChHHHHHHHHHHhC-CCcEEEEEc
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFL-GVPVTLVYS  272 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~-g~~Vtlv~~  272 (535)
                      .++++|+|.|.+|..+|..|.+. |.+|+++++
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~   71 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEI   71 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEES
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCCeEEEEEC
Confidence            46899999999999999999999 999999986

>1s3c_A Arsenate reductase; ARSC, arsenite, oxidoreductase; 1.25A {Escherichia coli} PDB: 1sd9_A 1i9d_A 1j9b_A 1sd8_A 1jzw_A* 1sk1_A* 1sjz_A* 1sk0_A* 1sk2_A 1s3d_A

Probab=88.10  E-value=0.28  Score=42.09  Aligned_cols=33  Identities=9%  Similarity=0.175  Sum_probs=28.0

Q ss_pred             cEEEEeCCCchhhHHHHHHHHHhcCCcceEEEEE
Q psy14461         59 RILIFTHAVLREENARAERYLNARGDRFAVLYLD   92 (535)
Q Consensus        59 ~v~v~~k~~cp~~~~~~k~~~~~~~~~~~~~~v~   92 (535)
                      .|.+|+.+.|| +|.++++++.+.|..++++++.
T Consensus         3 ~itiY~~p~C~-~crkak~~L~~~gi~~~~idi~   35 (141)
T 1s3c_A            3 NITIYHNPASG-TSRNTLEMIRNSGTEPTIILYL   35 (141)
T ss_dssp             CCEEECCTTCH-HHHHHHHHHHHTTCCCEEECTT
T ss_pred             cEEEEECCCCh-HHHHHHHHHHHcCCCEEEEECC
Confidence            47789999999 9999999999999887655544

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=87.99  E-value=0.37  Score=52.21  Aligned_cols=33  Identities=15%  Similarity=0.131  Sum_probs=30.5

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-Cc
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RR  274 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~  274 (535)
                      -.|+|||+|..|+.+|..|++.|.+|+++++ +.
T Consensus        47 ~dvvIIG~G~aGl~aA~~l~~~G~~V~liE~~~~   80 (623)
T 3pl8_A           47 YDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEI   80 (623)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCcEEEEeccCC
Confidence            3699999999999999999999999999998 53

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=87.48  E-value=0.52  Score=49.55  Aligned_cols=36  Identities=14%  Similarity=-0.045  Sum_probs=32.4

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcc
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHL  123 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~  123 (535)
                      .++++|||+|.+|+.+|.++...+.+|+|+|++...
T Consensus         5 ~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~~   40 (504)
T 1n4w_A            5 YVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLW   40 (504)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence            478999999999999999888889999999998854

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=87.40  E-value=0.81  Score=47.33  Aligned_cols=80  Identities=19%  Similarity=0.052  Sum_probs=56.5

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEE
Q psy14461        240 WPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVR  317 (535)
Q Consensus       240 ~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~  317 (535)
                      .+++|.|||.|.+|+-+|..|.++|.+|++.+. +...   ++     ..+.|++.||++ .+....       .     
T Consensus         8 ~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~~~---~~-----~~~~L~~~gi~~~~g~~~~-------~-----   67 (451)
T 3lk7_A            8 ENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDE---NP-----TAQSLLEEGIKVVCGSHPL-------E-----   67 (451)
T ss_dssp             TTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCGGG---CH-----HHHHHHHTTCEEEESCCCG-------G-----
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcccC---Ch-----HHHHHHhCCCEEEECCChH-------H-----
Confidence            368999999999999999999999999999997 4211   11     224566778887 543210       0     


Q ss_pred             EecCCCCCceEEEcCEEEEccCCCCCCCCC
Q psy14461        318 GFHPESKEPFADVFKTVVNAMEKKFDFAAL  347 (535)
Q Consensus       318 ~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l  347 (535)
                      +   .++     .+|.|++++|..|+.+.+
T Consensus        68 ~---~~~-----~~d~vv~spgi~~~~p~~   89 (451)
T 3lk7_A           68 L---LDE-----DFCYMIKNPGIPYNNPMV   89 (451)
T ss_dssp             G---GGS-----CEEEEEECTTSCTTSHHH
T ss_pred             h---hcC-----CCCEEEECCcCCCCChhH
Confidence            0   011     168999999998877654

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=87.33  E-value=0.33  Score=46.82  Aligned_cols=31  Identities=29%  Similarity=0.336  Sum_probs=29.6

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      ++|.|||+|.+|..+|..|++.|.+|+++++
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~   35 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDI   35 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeC
Confidence            6899999999999999999999999999987

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=87.28  E-value=0.4  Score=51.26  Aligned_cols=35  Identities=9%  Similarity=-0.119  Sum_probs=30.9

Q ss_pred             EEEEeeCCccHHHHHHHHHhh-CCCeEEEEecCCcc
Q psy14461         89 LYLDRIGDEGILLEEELKRQT-NQRRDELQERGSHL  123 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~-~~~~V~lie~~~~~  123 (535)
                      +|++|||+|.+|+..|.++.. .+.+|+|+|++...
T Consensus         3 yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG~~~   38 (566)
T 3fim_B            3 FDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSD   38 (566)
T ss_dssp             EEEEESCCSTTHHHHHHHHTTSTTCCEEEECSSBCC
T ss_pred             cCEEEECCcHHHHHHHHHHHhCcCCcEEEEecCCcc
Confidence            688999999999999998876 78999999998743

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=87.16  E-value=0.37  Score=49.75  Aligned_cols=123  Identities=10%  Similarity=-0.094  Sum_probs=73.7

Q ss_pred             EEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHHHH
Q psy14461         90 YLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRFCI  169 (535)
Q Consensus        90 ~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  169 (535)
                      ++.++|.|++|+++|..+...+.+|+++|........                                           
T Consensus         7 ~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~-------------------------------------------   43 (439)
T 2x5o_A            7 NVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGL-------------------------------------------   43 (439)
T ss_dssp             CEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSCTTG-------------------------------------------
T ss_pred             EEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCcchh-------------------------------------------
Confidence            4689999999999998888889999999987632100                                           


Q ss_pred             HHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEceeEEEcceEEEeeCceecC-CCCC-----CceechhhHHhccCCCCc
Q psy14461        170 RAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAVERRCLP-EPRN-----SALISADDLFRLGAWPGK  243 (535)
Q Consensus       170 ~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~~~~~~d~lViATGs~p~~-~i~G-----~~v~~~~~~~~~~~~~k~  243 (535)
                             ..++ .|+++..|.-   .     .+... .+|.||+++|..|.. .+..     ..+++..+++......+.
T Consensus        44 -------~~l~-~G~~~~~g~~---~-----~~~~~-~~d~vV~s~gi~~~~p~~~~a~~~~~~v~~~~~~~~~~~~~~v  106 (439)
T 2x5o_A           44 -------DKLP-EAVERHTGSL---N-----DEWLM-AADLIVASPGIALAHPSLSAAADAGIEIVGDIELFCREAQAPI  106 (439)
T ss_dssp             -------GGSC-TTSCEEESSC---C-----HHHHH-TCSEEEECTTSCTTCHHHHHHHHTTCEEECHHHHHHHHCCSCE
T ss_pred             -------HHhh-CCCEEEECCC---c-----HHHhc-cCCEEEeCCCCCCCCHHHHHHHHCCCcEEEHHHHHHHhcCCCE
Confidence                   1133 4666554420   0     00011 478999999976543 2221     234554444332222345


Q ss_pred             EEEECCC---hHHHHHHHHHHhCCCcEEEEEc
Q psy14461        244 TLVLGGS---LMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       244 vvViGgG---~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      |.|-|..   -+..-++..|...|.++.+...
T Consensus       107 I~VTGTnGKTTT~~ml~~iL~~~g~~~~~~gn  138 (439)
T 2x5o_A          107 VAITGSNGKSTVTTLVGEMAKAAGVNVGVGGN  138 (439)
T ss_dssp             EEEECSSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             EEEECCCCHHHHHHHHHHHHHhcCCCEEEecc
Confidence            5565542   3555677788888888765543

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=87.06  E-value=0.49  Score=49.14  Aligned_cols=34  Identities=15%  Similarity=0.333  Sum_probs=30.2

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCC-cEEEEEc-Cc
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLGV-PVTLVYS-RR  274 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g~-~Vtlv~~-~~  274 (535)
                      ..+|+|||+|..|+-+|..|++.|. +|+++++ ++
T Consensus         4 ~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~~   39 (472)
T 1b37_A            4 GPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDH   39 (472)
T ss_dssp             -CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCCC
Confidence            3579999999999999999999998 8999987 53

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=87.00  E-value=0.35  Score=53.02  Aligned_cols=36  Identities=6%  Similarity=-0.055  Sum_probs=31.1

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCC--------CeEEEEecCC-cc
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQ--------RRDELQERGS-HL  123 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~--------~~V~lie~~~-~~  123 (535)
                      ..+|+|||+|.+|+.+|..+...+        .+|+|+|+.+ .+
T Consensus        56 ~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~~r~  100 (721)
T 3ayj_A           56 NYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSF  100 (721)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCTTBG
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccCccc
Confidence            367899999999999998776655        8999999998 76

>3f0i_A Arsenate reductase; structural genomics, IDP01300, vibrio CH center for structural genomics of infectious diseases, CSGI oxidoreductase; HET: MSE; 1.88A {Vibrio cholerae}

Probab=86.28  E-value=0.42  Score=39.69  Aligned_cols=35  Identities=11%  Similarity=0.150  Sum_probs=29.1

Q ss_pred             EEEEeCCCchhhHHHHHHHHHhcCCcceEEEEEeeC
Q psy14461         60 ILIFTHAVLREENARAERYLNARGDRFAVLYLDRIG   95 (535)
Q Consensus        60 v~v~~k~~cp~~~~~~k~~~~~~~~~~~~~~v~iiG   95 (535)
                      +.+|..+.|| +|.++++++.+.|..++.+++.--+
T Consensus         6 i~iY~~p~C~-~c~ka~~~L~~~gi~~~~~di~~~~   40 (119)
T 3f0i_A            6 VVIYHNPKCS-KSRETLALLENQGIAPQVIKYLETS   40 (119)
T ss_dssp             CEEECCTTCH-HHHHHHHHHHHTTCCCEEECHHHHC
T ss_pred             EEEEECCCCh-HHHHHHHHHHHcCCceEEEEeccCc
Confidence            6789999999 9999999999999887666554443

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=85.86  E-value=0.62  Score=48.99  Aligned_cols=36  Identities=14%  Similarity=-0.052  Sum_probs=32.2

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcc
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHL  123 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~  123 (535)
                      .++++|||+|.+|+.+|.++...+.+|+|+|++...
T Consensus        11 ~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~~   46 (507)
T 1coy_A           11 RVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRSW   46 (507)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCS
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence            478999999999999999888889999999998753

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=85.01  E-value=0.74  Score=42.31  Aligned_cols=30  Identities=20%  Similarity=0.303  Sum_probs=28.6

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      +|+|+|+|.+|..+|..|.+.|.+|+++++
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid~   31 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKYGVVIINK   31 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEEC
Confidence            699999999999999999999999999986

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=84.90  E-value=0.76  Score=47.37  Aligned_cols=75  Identities=11%  Similarity=0.040  Sum_probs=52.6

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEE
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRG  318 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~  318 (535)
                      +++|+|||.|.+|+.+|..|.++|.+|+..+. ... +. .        ..|+ .|+++ .+...    .+       .+
T Consensus         5 ~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~-~~-~--------~~l~-~G~~~~~g~~~----~~-------~~   62 (439)
T 2x5o_A            5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTP-PG-L--------DKLP-EAVERHTGSLN----DE-------WL   62 (439)
T ss_dssp             TCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSC-TT-G--------GGSC-TTSCEEESSCC----HH-------HH
T ss_pred             CCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCc-ch-h--------HHhh-CCCEEEECCCc----HH-------Hh
Confidence            57899999999999999999999999999987 432 11 0        3455 67776 44310    00       00


Q ss_pred             ecCCCCCceEEEcCEEEEccCCCCCCCCC
Q psy14461        319 FHPESKEPFADVFKTVVNAMEKKFDFAAL  347 (535)
Q Consensus       319 ~~~~~G~~~~~~~D~vi~a~G~~p~~~~l  347 (535)
                               . .+|.|++++|..|..+.+
T Consensus        63 ---------~-~~d~vV~s~gi~~~~p~~   81 (439)
T 2x5o_A           63 ---------M-AADLIVASPGIALAHPSL   81 (439)
T ss_dssp             ---------H-TCSEEEECTTSCTTCHHH
T ss_pred             ---------c-cCCEEEeCCCCCCCCHHH
Confidence                     1 468999999988765443

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=84.52  E-value=0.88  Score=41.64  Aligned_cols=33  Identities=21%  Similarity=0.172  Sum_probs=29.5

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        240 WPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       240 ~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      ...+|.|||.|.+|.-+|..|.+.|.+|+++.+
T Consensus        18 ~~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~   50 (209)
T 2raf_A           18 QGMEITIFGKGNMGQAIGHNFEIAGHEVTYYGS   50 (209)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHTTCEEEEECT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcC
Confidence            356899999999999999999999999999987

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=84.40  E-value=0.85  Score=48.95  Aligned_cols=36  Identities=14%  Similarity=-0.103  Sum_probs=32.1

Q ss_pred             EEEEEeeCCccHHHHHHHHHhh-CCCeEEEEecCCcc
Q psy14461         88 VLYLDRIGDEGILLEEELKRQT-NQRRDELQERGSHL  123 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~-~~~~V~lie~~~~~  123 (535)
                      .++++|||+|.+|+..|.++.. .+.+|+|+|++...
T Consensus        24 ~~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~~~   60 (587)
T 1gpe_A           24 TYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE   60 (587)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCC
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCCcc
Confidence            5789999999999999998877 78999999998753

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=83.97  E-value=0.44  Score=40.67  Aligned_cols=33  Identities=27%  Similarity=0.349  Sum_probs=30.0

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        240 WPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       240 ~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      .+++|+|||+|.+|..++..|.+.|.+|+++.+
T Consensus        20 ~~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r   52 (144)
T 3oj0_A           20 GGNKILLVGNGMLASEIAPYFSYPQYKVTVAGR   52 (144)
T ss_dssp             CCCEEEEECCSHHHHHHGGGCCTTTCEEEEEES
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence            378999999999999999999999988888876

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=83.46  E-value=0.41  Score=52.40  Aligned_cols=35  Identities=14%  Similarity=0.208  Sum_probs=32.0

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCC--------CcEEEEEc-C-cC
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLG--------VPVTLVYS-R-RL  275 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g--------~~Vtlv~~-~-~~  275 (535)
                      +++|+|||+|..|+-+|..|.+.|        .+|+|+++ + ++
T Consensus        56 ~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~~r~  100 (721)
T 3ayj_A           56 NYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSF  100 (721)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCTTBG
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccCccc
Confidence            368999999999999999999988        89999999 7 66

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=83.33  E-value=1.1  Score=44.62  Aligned_cols=31  Identities=29%  Similarity=0.313  Sum_probs=29.6

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      |+|+|+|||..|.+++..+++.|.+|.+++.
T Consensus         2 K~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~   32 (363)
T 4ffl_A            2 KTICLVGGKLQGFEAAYLSKKAGMKVVLVDK   32 (363)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence            6899999999999999999999999999986

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=83.25  E-value=0.98  Score=46.83  Aligned_cols=33  Identities=24%  Similarity=0.178  Sum_probs=30.8

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        240 WPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       240 ~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      ..++|+|||+|.+|...+..|.+.|.+|+++.+
T Consensus        11 ~~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~   43 (457)
T 1pjq_A           11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNAL   43 (457)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEES
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCcCEEEEEcC
Confidence            358999999999999999999999999999985

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=83.02  E-value=0.99  Score=47.93  Aligned_cols=55  Identities=9%  Similarity=0.014  Sum_probs=38.7

Q ss_pred             HHHhhhcCCeEE-cceEEEEEEEeCCCcE-EEEEecCCCCCceEEEcC-EEEEccCCC
Q psy14461        287 LLSSLTKAGVSI-QCCVIEKVISSFDGMK-GVRGFHPESKEPFADVFK-TVVNAMEKK  341 (535)
Q Consensus       287 ~~~~l~~~gV~i-~~~~v~~i~~~~~~~~-~v~~~~~~~G~~~~~~~D-~vi~a~G~~  341 (535)
                      +....++.|+++ +++.|++|..++++++ .|++.+..+|+..++.++ .||+|+|.-
T Consensus       215 l~~a~~~~~~~i~~~~~V~~i~~~~~~~~~GV~~~~~~~g~~~~i~A~k~VIlaaG~~  272 (546)
T 2jbv_A          215 IHPIVEQENFTLLTGLRARQLVFDADRRCTGVDIVDSAFGHTHRLTARNEVVLSTGAI  272 (546)
T ss_dssp             TGGGTTCTTEEEECSCEEEEEEECTTSBEEEEEEESSTTSCEEEEEEEEEEEECSHHH
T ss_pred             HHHHhcCCCcEEEeCCEEEEEEECCCCeEEEEEEEECCCCcEEEEEeCccEEEecCcc
Confidence            344445679999 9999999987521444 466653112776789999 999999963

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=82.36  E-value=1.1  Score=45.33  Aligned_cols=33  Identities=24%  Similarity=0.276  Sum_probs=30.5

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        240 WPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       240 ~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      .+.+|+|+|+|.+|..+|..+..+|.+|+++++
T Consensus       189 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~  221 (405)
T 4dio_A          189 PAAKIFVMGAGVAGLQAIATARRLGAVVSATDV  221 (405)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcC
Confidence            367999999999999999999999999998876

>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}

Probab=81.95  E-value=0.74  Score=48.66  Aligned_cols=77  Identities=21%  Similarity=0.112  Sum_probs=54.4

Q ss_pred             CCCcEEEECCChHHHH-HHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEE
Q psy14461        240 WPGKTLVLGGSLMAVE-IAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGV  316 (535)
Q Consensus       240 ~~k~vvViGgG~~g~e-~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v  316 (535)
                      ..++|.+||-|-+|+- +|..|.++|.+|+..+. ...     +     ..+.|++.||++ .+...             
T Consensus        18 ~~~~i~~iGiGg~Gms~lA~~l~~~G~~V~~sD~~~~~-----~-----~~~~L~~~gi~~~~G~~~-------------   74 (524)
T 3hn7_A           18 QGMHIHILGICGTFMGSLALLARALGHTVTGSDANIYP-----P-----MSTQLEQAGVTIEEGYLI-------------   74 (524)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCCT-----T-----HHHHHHHTTCEEEESCCG-------------
T ss_pred             cCCEEEEEEecHhhHHHHHHHHHhCCCEEEEECCCCCc-----H-----HHHHHHHCCCEEECCCCH-------------
Confidence            3689999999999997 68889999999999987 421     1     234566678877 44210             


Q ss_pred             EEecCCCCCceEEEcCEEEEccCCCCCCCCC
Q psy14461        317 RGFHPESKEPFADVFKTVVNAMEKKFDFAAL  347 (535)
Q Consensus       317 ~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l  347 (535)
                              +.....+|+|+++.|..|..+.+
T Consensus        75 --------~~~~~~~d~vV~Spgi~~~~p~l   97 (524)
T 3hn7_A           75 --------AHLQPAPDLVVVGNAMKRGMDVI   97 (524)
T ss_dssp             --------GGGCSCCSEEEECTTCCTTSHHH
T ss_pred             --------HHcCCCCCEEEECCCcCCCCHHH
Confidence                    00012479999999998887654

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=81.89  E-value=0.97  Score=45.45  Aligned_cols=33  Identities=30%  Similarity=0.285  Sum_probs=30.6

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        240 WPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       240 ~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      .+++|+|+|+|.+|..+|..+..+|.+|+++++
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~  215 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRLGAKTTGYDV  215 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHHTCEEEEECS
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCCCEEEEEeC
Confidence            368999999999999999999999999999876

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=81.85  E-value=1.2  Score=43.56  Aligned_cols=32  Identities=19%  Similarity=0.209  Sum_probs=28.6

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        240 WPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       240 ~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      ...+|.|||+|.+|.-+|..|++.|.+|+++ +
T Consensus        18 ~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~   49 (318)
T 3hwr_A           18 QGMKVAIMGAGAVGCYYGGMLARAGHEVILI-A   49 (318)
T ss_dssp             --CEEEEESCSHHHHHHHHHHHHTTCEEEEE-C
T ss_pred             cCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-E
Confidence            4578999999999999999999999999998 5

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=81.83  E-value=1.1  Score=43.44  Aligned_cols=31  Identities=35%  Similarity=0.432  Sum_probs=29.5

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      ++|.|||+|.+|.-+|..|++.|.+|+++++
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~   46 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQ   46 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEC
Confidence            6899999999999999999999999999987

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=81.32  E-value=1.6  Score=40.31  Aligned_cols=32  Identities=19%  Similarity=0.159  Sum_probs=30.1

Q ss_pred             CCcEEEECC-ChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        241 PGKTLVLGG-SLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       241 ~k~vvViGg-G~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      +++|+|.|+ |.+|..++..|.+.|.+|+++.|
T Consensus        21 ~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R   53 (236)
T 3e8x_A           21 GMRVLVVGANGKVARYLLSELKNKGHEPVAMVR   53 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCeEEEECCCChHHHHHHHHHHhCCCeEEEEEC
Confidence            578999997 99999999999999999999998

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=81.07  E-value=1  Score=42.53  Aligned_cols=33  Identities=21%  Similarity=0.244  Sum_probs=30.0

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCC-cEEEEEcC
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLGV-PVTLVYSR  273 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g~-~Vtlv~~~  273 (535)
                      .++|+|||.|-+|.++|..|++.|. ++++++++
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d   64 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD   64 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCC
Confidence            3789999999999999999999997 89999873

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=81.02  E-value=1.1  Score=47.41  Aligned_cols=30  Identities=20%  Similarity=0.214  Sum_probs=28.8

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      .++|||+|..|+-+|..|++.|.+|.++++
T Consensus         9 D~iIvG~G~aG~~~A~~L~~~g~~VlvlE~   38 (546)
T 1kdg_A            9 DYIIVGAGPGGIIAADRLSEAGKKVLLLER   38 (546)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECS
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCeEEEEeC
Confidence            699999999999999999999999999987

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=80.87  E-value=1.5  Score=43.93  Aligned_cols=32  Identities=25%  Similarity=0.414  Sum_probs=30.2

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      +++|+|+|+|.+|..+|..++..|.+|+++++
T Consensus       166 ~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~  197 (369)
T 2eez_A          166 PASVVILGGGTVGTNAAKIALGMGAQVTILDV  197 (369)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEEC
Confidence            58999999999999999999999999999986

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=80.52  E-value=1.7  Score=41.35  Aligned_cols=31  Identities=29%  Similarity=0.313  Sum_probs=29.8

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      ++|+|.|+|++|..++..|.+.|.+|+.+.|
T Consensus         4 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r   34 (286)
T 3gpi_A            4 SKILIAGCGDLGLELARRLTAQGHEVTGLRR   34 (286)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence            6899999999999999999999999999998

>2axo_A Hypothetical protein ATU2684; alpha beta protein., structural genomics, PSI, protein struc initiative; 1.80A {Agrobacterium tumefaciens str} SCOP: c.47.1.19

Probab=80.42  E-value=1.2  Score=42.59  Aligned_cols=24  Identities=17%  Similarity=0.120  Sum_probs=21.5

Q ss_pred             CcEEEEeCCCchhhHHHHHHHHHhc
Q psy14461         58 NRILIFTHAVLREENARAERYLNAR   82 (535)
Q Consensus        58 ~~v~v~~k~~cp~~~~~~k~~~~~~   82 (535)
                      ..|.+|++..|| ||.++++++.+.
T Consensus        44 ~~VelyTs~gCp-~C~~Ak~lL~~~   67 (270)
T 2axo_A           44 GVVELFTSQGCA-SCPPADEALRKM   67 (270)
T ss_dssp             CEEEEEECTTCT-TCHHHHHHHHHH
T ss_pred             cEEEEEeCCCCC-ChHHHHHHHHHh
Confidence            358889999999 999999999877

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	535
d1h6va2	122	c.3.1.5 (A:171-292) Mammalian thioredoxin reductas	2e-10
d1feca1	240	c.3.1.5 (A:1-169,A:287-357) Trypanothione reductas	5e-09
d1v59a3	123	d.87.1.1 (A:356-478) Dihydrolipoamide dehydrogenas	9e-09
d1ebda1	223	c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehyd	2e-08
d3lada3	124	d.87.1.1 (A:349-472) Dihydrolipoamide dehydrogenas	2e-08
d1h6va1	235	c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin	7e-08
d3grsa1	221	c.3.1.5 (A:18-165,A:291-363) Glutathione reductase	3e-07
d1mo9a3	140	d.87.1.1 (A:384-523) NADH-dependent 2-ketopropyl c	4e-07
d1gesa3	115	d.87.1.1 (A:336-450) Glutathione reductase {Escher	4e-07
d1dxla3	123	d.87.1.1 (A:348-470) Dihydrolipoamide dehydrogenas	6e-07
d1onfa3	119	d.87.1.1 (A:377-495) Glutathione reductase {Plasmo	1e-06
d1dxla1	221	c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd	2e-06
d1ojta1	229	c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh	2e-06
d1v59a1	233	c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehyd	4e-06
d1h6va3	133	d.87.1.1 (A:367-499) Mammalian thioredoxin reducta	1e-05
d3lada1	229	c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehyd	1e-05
d1aoga1	238	c.3.1.5 (A:3-169,A:287-357) Trypanothione reductas	1e-05
d1xdia1	233	c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehyd	2e-05
d3grsa3	115	d.87.1.1 (A:364-478) Glutathione reductase {Human	3e-05
d1ebda3	115	d.87.1.1 (A:347-461) Dihydrolipoamide dehydrogenas	1e-04
d1mo9a1	261	c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketop	1e-04
d1onfa2	117	c.3.1.5 (A:154-270) Glutathione reductase {Plasmod	1e-04
d1gesa1	217	c.3.1.5 (A:3-146,A:263-335) Glutathione reductase	1e-04
d1nhpa3	126	d.87.1.1 (A:322-447) NADH peroxidase {Enterococcus	2e-04
d1gesa2	116	c.3.1.5 (A:147-262) Glutathione reductase {Escheri	3e-04
d3grsa2	125	c.3.1.5 (A:166-290) Glutathione reductase {Human (	7e-04
d1lvla1	220	c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehyd	8e-04
d1ojta3	128	d.87.1.1 (A:471-598) Dihydrolipoamide dehydrogenas	0.001
d1ojta2	125	c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase	0.001
d1dxla2	123	c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase	0.002
d1feca3	128	d.87.1.1 (A:358-485) Trypanothione reductase {Crit	0.003
d1lvla3	123	d.87.1.1 (A:336-458) Dihydrolipoamide dehydrogenas	0.004
d1xdia2	118	d.87.1.1 (A:349-466) Dihydrolipoamide dehydrogenas	0.004
d1aoga2	117	c.3.1.5 (A:170-286) Trypanothione reductase {Trypa	0.004

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 122

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 56.2 bits (135), Expect = 2e-10
 Identities = 40/113 (35%), Positives = 59/113 (52%), Gaps = 4/113 (3%)

Query: 229 ISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILL 288
           IS+DDLF L   PGKTLV+G S +A+E A  L  +G+ VT++    LL+ FDQ+M   + 
Sbjct: 8   ISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIG 67

Query: 289 SSLTKAGVSIQCCV----IEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNA 337
             + + G+          IE++ +   G   V      S+E   D F TV+ A
Sbjct: 68  EHMEEHGIKFIRQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLA 120

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 240

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

 Score = 55.0 bits (131), Expect = 5e-09
 Identities = 13/66 (19%), Positives = 30/66 (45%), Gaps = 1/66 (1%)

Query: 347 LNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGM 406
           L L   GV++ K   +  +   +T+V NI+A+G +   +     +A       ++ ++  
Sbjct: 176 LQLEKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDVT-DRVMLTPVAINEGAAFVDTVFAN 234

Query: 407 QDQLMD 412
           + +  D
Sbjct: 235 KPRATD 240

>d1v59a3 d.87.1.1 (A:356-478) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 123

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.6 bits (123), Expect = 9e-09
 Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 2/74 (2%)

Query: 413 YSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVC 472
           Y+ +P V+    E   VG +EE   +        I K  +            E FVK++ 
Sbjct: 1   YNNIPSVMYSHPEVAWVGKTEEQLKEAGIDY--KIGKFPFAANSRAKTNQDTEGFVKILI 58

Query: 473 LKGGERVLGIHVIG 486
               ER+LG H+IG
Sbjct: 59  DSKTERILGAHIIG 72

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 223

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 52.5 bits (125), Expect = 2e-08
 Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 2/67 (2%)

Query: 347 LNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGM 406
           L L  IG+ +  +  +  +++ +TSV NIFA+G IV   P  A  A+   ++  E + G 
Sbjct: 158 LGLEQIGIKMTNRGLIEVDQQCRTSVPNIFAIGDIV-PGPALAHKASYEGKVAAEAIAG- 215

Query: 407 QDQLMDY 413
               +DY
Sbjct: 216 HPSAVDY 222

>d3lada3 d.87.1.1 (A:349-472) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 124

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 50.3 bits (120), Expect = 2e-08
 Identities = 24/123 (19%), Positives = 43/123 (34%), Gaps = 25/123 (20%)

Query: 413 YSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVC 472
           Y  +P V+    E   VG +E+A                                V +  
Sbjct: 1   YDLIPAVIYTHPEIAGVGKTEQALKAEG-----------------------VAINVGVFP 37

Query: 473 LKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAEL 532
                R +  +      FVK++     +RVLG+HVIG + A ++   ++A+    +  +L
Sbjct: 38  FAASGRAMAAN--DTAGFVKVIADAKTDRVLGVHVIGPSAAELVQQGAIAMEFGTSAEDL 95

Query: 533 DGT 535
              
Sbjct: 96  GMM 98

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 235

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 51.3 bits (121), Expect = 7e-08
 Identities = 18/55 (32%), Positives = 30/55 (54%)

Query: 358 KKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQDQLMD 412
           K   +   +++QT+V  I+A+G I+ GK     +A  + RL+ +RLYG      D
Sbjct: 181 KTGKIPVTDEEQTNVPYIYAIGDILEGKLELTPVAIQAGRLLAQRLYGGSTVKCD 235

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (117), Expect = 3e-07
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 347 LNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYG 405
           L+L+ +G+    K +++ +E   T+V  I+AV G V GK     +A  + R +  RL+ 
Sbjct: 156 LSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAV-GDVCGKALLTPVAIAAGRKLAHRLFE 213

>d1mo9a3 d.87.1.1 (A:384-523) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 140

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

 Score = 47.4 bits (112), Expect = 4e-07
 Identities = 21/119 (17%), Positives = 35/119 (29%), Gaps = 9/119 (7%)

Query: 417 PVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVCLKGG 476
           P  +    E   +GM EE A         +          N+  P      +        
Sbjct: 5   PDFLHTHYEVSFLGMGEEEARAAGHEIVTIKMPPDTENGLNVALPASDRTMLYAFGKGTA 64

Query: 477 ERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT 535
                      + F K+V      +VLG H +G          ++ +++ LT  EL   
Sbjct: 65  H---------MSGFQKIVIDAKTRKVLGAHHVGYGAKDAFQYLNVLIKQGLTVDELGDM 114

>d1gesa3 d.87.1.1 (A:336-450) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 115

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 46.7 bits (110), Expect = 4e-07
 Identities = 37/123 (30%), Positives = 57/123 (46%), Gaps = 23/123 (18%)

Query: 413 YSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVC 472
           YS +P VV      GTVG++E  A + YG D + +YKSS+                    
Sbjct: 1   YSNIPTVVFSHPPIGTVGLTEPQAREQYGDDQVKVYKSSFTAMYT--------------- 45

Query: 473 LKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAEL 532
                    +    Q   +KLVC+   E+++GIH IG  +  M+ G+++AL+   TK + 
Sbjct: 46  --------AVTTHRQPCRMKLVCVGSEEKIVGIHGIGFGMDEMLQGFAVALKMGATKKDF 97

Query: 533 DGT 535
           D T
Sbjct: 98  DNT 100

>d1dxla3 d.87.1.1 (A:348-470) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 123

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 46.1 bits (109), Expect = 6e-07
 Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 2/73 (2%)

Query: 413 YSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVC 472
           Y  +P VV  + E  +VG +EE   +        + K  +            E  VK++ 
Sbjct: 1   YDKVPGVVYTNPEVASVGKTEEQVKETGVE--YRVGKFPFMANSRAKAIDNAEGLVKIIA 58

Query: 473 LKGGERVLGIHVI 485
            K  +++LG+H++
Sbjct: 59  EKETDKILGVHIM 71

>d1onfa3 d.87.1.1 (A:377-495) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 119

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

 Score = 45.6 bits (107), Expect = 1e-06
 Identities = 33/123 (26%), Positives = 58/123 (47%), Gaps = 19/123 (15%)

Query: 413 YSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVC 472
           Y  +P V+      GT+G+SEEAA ++YG + + IY+S +                    
Sbjct: 1   YKLIPTVIFSHPPIGTIGLSEEAAIQIYGKENVKIYESKFTNLFF--------------- 45

Query: 473 LKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAEL 532
                       + +  ++KLVC+   E + G+H+IG N   ++ G+++AL+   TK + 
Sbjct: 46  ----SVYDIEPELKEKTYLKLVCVGKDELIKGLHIIGLNADEIVQGFAVALKMNATKKDF 101

Query: 533 DGT 535
           D T
Sbjct: 102 DET 104

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 46.7 bits (110), Expect = 2e-06
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 347 LNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYG 405
           LNL  IGV+  K   ++ NE+  T+V  ++A+G ++ G P  A  A       +E L G
Sbjct: 158 LNLDKIGVETDKLGRILVNERFSTNVSGVYAIGDVIPG-PMLAHKAEEDGVACVEYLAG 215

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 46.8 bits (110), Expect = 2e-06
 Identities = 17/93 (18%), Positives = 39/93 (41%), Gaps = 1/93 (1%)

Query: 313 MKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSV 372
                   P  ++        ++ A  +  +   ++    GV +  + ++  +++ +T+V
Sbjct: 132 GDAYEQAAPTGEKKIVAFKNCIIAAGSRAPNGKLISAEKAGVAVTDRGFIEVDKQMRTNV 191

Query: 373 GNIFAVGGIVHGKPNNASMAAISARLIIERLYG 405
            +I+A+G IV G+P  A  A     +  E   G
Sbjct: 192 PHIYAIGDIV-GQPMLAHKAVHEGHVAAENCAG 223

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.6 bits (107), Expect = 4e-06
 Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 1/70 (1%)

Query: 337 AMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISA 396
            + ++   A L    IG+++ K+  +V +++  +   +I  VG +  G P  A  A    
Sbjct: 160 FVGRRPYIAGLGAEKIGLEVDKRGRLVIDDQFNSKFPHIKVVGDVTFG-PMLAHKAEEEG 218

Query: 397 RLIIERLYGM 406
              +E L   
Sbjct: 219 IAAVEMLKTG 228

>d1h6va3 d.87.1.1 (A:367-499) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 133

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.2 bits (101), Expect = 1e-05
 Identities = 34/123 (27%), Positives = 52/123 (42%), Gaps = 21/123 (17%)

Query: 413 YSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVC 472
           Y  +P  V   +E+G  G+SEE A + +G + + +Y S +   +                
Sbjct: 1   YDNVPTTVFTPLEYGCCGLSEEKAVEKFGEENIEVYHSFFWPLEW-------------TV 47

Query: 473 LKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAEL 532
                      VI          LK  ERV+G HV+G N   +  G++ AL+  LTK +L
Sbjct: 48  PSRDNNKCYAKVI--------CNLKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKQQL 99

Query: 533 DGT 535
           D T
Sbjct: 100 DST 102

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 44.7 bits (104), Expect = 1e-05
 Identities = 20/134 (14%), Positives = 48/134 (35%), Gaps = 2/134 (1%)

Query: 278 HFDQEMVRILLSSLTKAGVS-IQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVN 336
              + +   + S +   GV+  +           +             E       +   
Sbjct: 96  QIVRNLTGGVASLIKANGVTLFEGHGKLLAGKKVEVTAADGSSQVLDTENVILASGSKPV 155

Query: 337 AMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISA 396
            + ++     L     GV + ++ ++  ++   TSV  ++A+G +V G    A  A+   
Sbjct: 156 EIPRRPVTTDLLAADSGVTLDERGFIYVDDYCATSVPGVYAIGDVVRG-AMLAHKASEEG 214

Query: 397 RLIIERLYGMQDQL 410
            ++ ER+ G + Q+
Sbjct: 215 VVVAERIAGHKAQM 228

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 238

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 44.3 bits (103), Expect = 1e-05
 Identities = 20/113 (17%), Positives = 37/113 (32%), Gaps = 2/113 (1%)

Query: 295 GVSIQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGV 354
           G           +              E++               +      L L + GV
Sbjct: 124 GWGSLESKNVVNVRESADPASAVKERLETEHILLASGSWPHMPNGRSPRTKDLQLQNAGV 183

Query: 355 DIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQ 407
            IK    V  +E  +T+V NI+A+ G V  +     +A   A  +++ ++G  
Sbjct: 184 MIKN-GGVQVDEYSRTNVSNIYAI-GDVTNRVMLTPVAINEAAALVDTVFGTT 234

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 43.5 bits (101), Expect = 2e-05
 Identities = 15/75 (20%), Positives = 31/75 (41%), Gaps = 1/75 (1%)

Query: 331 FKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNAS 390
               +       + + L L  +G+ + + +Y+  +   +T    I+A G    G    AS
Sbjct: 153 ASPRILPSGSVPNTSGLGLERVGIQLGRGNYLTVDRVSRTLATGIYAAGDCT-GLLPLAS 211

Query: 391 MAAISARLIIERLYG 405
           +AA+  R+ +    G
Sbjct: 212 VAAMQGRIAMYHALG 226

>d3grsa3 d.87.1.1 (A:364-478) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (96), Expect = 3e-05
 Identities = 23/76 (30%), Positives = 40/76 (52%)

Query: 413 YSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVC 472
           Y+ +P VV      GTVG++E+ A   YG + +  Y +S+    + +     +  +K+VC
Sbjct: 1   YNNIPTVVFSHPPIGTVGLTEDEAIHKYGIENVKTYSTSFTPMYHAVTKRKTKCVMKMVC 60

Query: 473 LKGGERVLGIHVIGQN 488
               E+V+GIH+ G  
Sbjct: 61  ANKEEKVVGIHMQGLG 76

>d1ebda3 d.87.1.1 (A:347-461) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 115

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 39.7 bits (92), Expect = 1e-04
 Identities = 25/119 (21%), Positives = 40/119 (33%), Gaps = 25/119 (21%)

Query: 417 PVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVCLKGG 476
           P VV  D E  +VG  E+ A           +  +                     L   
Sbjct: 3   PAVVFSDPECASVGYFEQQAKDEGIDVIAAKFPFAANGR----------------ALALN 46

Query: 477 ERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT 535
           +          + F+KLV  K    ++G  +IG N + MI    LA+   +T  ++  T
Sbjct: 47  D---------TDGFLKLVVRKEDGVIIGAQIIGPNASDMIAELGLAIEAGMTAEDIALT 96

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 261

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

 Score = 41.5 bits (96), Expect = 1e-04
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 4/65 (6%)

Query: 350 HHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQDQ 409
             +G+D+  K  V+ NE  QTSV N++AVG ++ G P     A  S       + G +  
Sbjct: 201 KILGLDLGPKGEVLVNEYLQTSVPNVYAVGDLIGG-PMEMFKARKSGCYAARNVMGEK-- 257

Query: 410 LMDYS 414
            + Y+
Sbjct: 258 -ISYT 261

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 117

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

 Score = 39.3 bits (91), Expect = 1e-04
 Identities = 21/101 (20%), Positives = 45/101 (44%), Gaps = 3/101 (2%)

Query: 229 ISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVY-SRRLLKHFDQEMVRIL 287
           IS+D+ F +     K  ++G   +AVE+   +  LG+   +     R+L+ FD+ ++ +L
Sbjct: 11  ISSDEFFNI-KESKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRKFDESVINVL 69

Query: 288 LSSLTKAGVSIQC-CVIEKVISSFDGMKGVRGFHPESKEPF 327
            + + K  ++I     + ++    D    +        E F
Sbjct: 70  ENDMKKNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHF 110

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 217

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 41.1 bits (95), Expect = 1e-04
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 347 LNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGM 406
           +NL   GV   +K Y+V ++   T++  I+AVG           +A  + R + ERL+  
Sbjct: 152 INLEAAGVKTNEKGYIVVDKYQNTNIEGIYAVGDNTGA-VELTPVAVAAGRRLSERLFNN 210

Query: 407 QD 408
           + 
Sbjct: 211 KP 212

>d1nhpa3 d.87.1.1 (A:322-447) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 126

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

 Score = 39.1 bits (91), Expect = 2e-04
 Identities = 20/114 (17%), Positives = 39/114 (34%), Gaps = 27/114 (23%)

Query: 423 DVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVCLKGGERVLGI 482
           D +F + G++E  A K+         K+     D                      ++  
Sbjct: 12  DYKFASTGINEVMAQKLGKE-----TKAVTVVEDY---------------------LMDF 45

Query: 483 HVIGQNNFVKLVCLKGGERVLGIHVIGQNVAG-MIFGYSLALRKFLTKAELDGT 535
           +   Q  + KLV      ++LG  ++ +      I   SLA++  +T  +L   
Sbjct: 46  NPDKQKAWFKLVYDPETTQILGAQLMSKADLTANINAISLAIQAKMTIEDLAYA 99

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 116

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 38.2 bits (88), Expect = 3e-04
 Identities = 22/97 (22%), Positives = 37/97 (38%), Gaps = 2/97 (2%)

Query: 223 PRNSALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPV-TLVYSRRLLKHFDQ 281
           P     I +D  F L A P +  V+G   + VE+   +N LG            L  FD 
Sbjct: 3   PGVEYGIDSDGFFALPALPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPSFDP 62

Query: 282 EMVRILLSSLTKAGVSIQC-CVIEKVISSFDGMKGVR 317
            +   L+  +   G  +    + + V+ + DG   + 
Sbjct: 63  MISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLE 99

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 7e-04
 Identities = 24/94 (25%), Positives = 46/94 (48%), Gaps = 2/94 (2%)

Query: 223 PRNSALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQE 282
           P  S  I++D  F+L   PG+++++G   +AVE+A  L+ LG   +L+     +      
Sbjct: 4   PGASLGITSDGFFQLEELPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRSFDS 63

Query: 283 MV-RILLSSLTKAGVSIQC-CVIEKVISSFDGMK 314
           M+       L  AGV +     +++V  +  G++
Sbjct: 64  MISTNCTEELENAGVEVLKFSQVKEVKKTLSGLE 97

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 220

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 38.8 bits (89), Expect = 8e-04
 Identities = 19/107 (17%), Positives = 41/107 (38%), Gaps = 2/107 (1%)

Query: 299 QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKK 358
              V+       DG +          E       +    + ++      NL  + + +  
Sbjct: 110 GVKVVHGWAKVLDGKQVEVDGQRIQCEHLLLATGSSSVELPRRPRTKGFNLECLDLKMNG 169

Query: 359 KSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYG 405
            +  + +E+ QTS+ N++A+G +  G+P  A  A     ++ E + G
Sbjct: 170 AAIAI-DERCQTSMHNVWAIGDVA-GEPMLAHRAMAQGEMVAEIIAG 214

>d1ojta3 d.87.1.1 (A:471-598) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 128

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 37.3 bits (86), Expect = 0.001
 Identities = 20/121 (16%), Positives = 33/121 (27%), Gaps = 25/121 (20%)

Query: 415 FLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVCLK 474
            +P V     E   VG +E +A           +  +                       
Sbjct: 3   VIPGVAYTSPEVAWVGETELSAKASARKITKANFPWAASGRAIANGC------------- 49

Query: 475 GGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDG 534
                          F KL+      R++G  ++G N   MI    LA+      A++  
Sbjct: 50  ------------DKPFTKLIFDAETGRIIGGGIVGPNGGDMIGEVCLAIEMGCDAADIGK 97

Query: 535 T 535
           T
Sbjct: 98  T 98

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 125

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 37.1 bits (85), Expect = 0.001
 Identities = 20/96 (20%), Positives = 42/96 (43%), Gaps = 3/96 (3%)

Query: 223 PRNSALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVY-SRRLLKHFDQ 281
           P +  +I +     L   PGK L++GG ++ +E+    + LG  + +V     L++  D+
Sbjct: 8   PEDPRIIDSSGALALKEVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQGADR 67

Query: 282 EMVRILLSSLTKAGVSIQCCVIEKVISSFDGMKGVR 317
           ++V++          +I      K ++      GV 
Sbjct: 68  DLVKVWQKQNEYRFDNIMVN--TKTVAVEPKEDGVY 101

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 123

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 36.0 bits (82), Expect = 0.002
 Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 2/88 (2%)

Query: 229 ISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLV-YSRRLLKHFDQEMVRIL 287
           +S+     L   P K +V+G   + +E+ +    +G  VT+V ++  ++   D E+ +  
Sbjct: 13  VSSTGALALSEIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPTMDAEIRKQF 72

Query: 288 LSSLTKAGVSIQC-CVIEKVISSFDGMK 314
             SL K G+  +    +  V +S DG+K
Sbjct: 73  QRSLEKQGMKFKLKTKVVGVDTSGDGVK 100

>d1feca3 d.87.1.1 (A:358-485) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 128

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

 Score = 35.8 bits (82), Expect = 0.003
 Identities = 22/113 (19%), Positives = 38/113 (33%), Gaps = 16/113 (14%)

Query: 413 YSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVC 472
           ++ +   V      G  G  EE AAK Y     V   S  P   N+      +  V++V 
Sbjct: 1   HTKVACAVFSIPPMGVCGYVEEDAAKKYD-QVAVYESSFTPLMHNISGSTYKKFMVRIVT 59

Query: 473 LKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQN------VAGMIFGY 519
                 VLG+H++G +           E +  + +  +           I  +
Sbjct: 60  NHADGEVLGVHMLGDS---------SPEIIQSVAICLKMGAKISDFYNTIGVH 103

>d1lvla3 d.87.1.1 (A:336-458) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 123

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 35.5 bits (81), Expect = 0.004
 Identities = 18/119 (15%), Positives = 39/119 (32%), Gaps = 25/119 (21%)

Query: 417 PVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVCLKGG 476
             V   D E   VG + E A++      +  +  +       L+                
Sbjct: 5   AAVCFTDPEVVVVGKTPEQASQQGLDCIVAQFPFAANGRAMSLES--------------- 49

Query: 477 ERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT 535
                     ++ FV++V  +    +LG   +G  V+ +   ++ +L       ++ GT
Sbjct: 50  ----------KSGFVRVVARRDNHLILGWQAVGVAVSELSTAFAQSLEMGACLEDVAGT 98

>d1xdia2 d.87.1.1 (A:349-466) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 118

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 35.1 bits (80), Expect = 0.004
 Identities = 18/119 (15%), Positives = 35/119 (29%), Gaps = 25/119 (21%)

Query: 417 PVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVCLKGG 476
              V    E   VG+ +        A   ++                             
Sbjct: 5   AATVFTRPEIAAVGVPQSVIDAGSVAARTIMLPLRTNARA-------------------- 44

Query: 477 ERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT 535
                     ++ FVK+ C +    V+G  V+    + +I   ++A++  +T  EL  T
Sbjct: 45  -----KMSEMRHGFVKIFCRRSTGVVIGGVVVAPIASELILPIAVAVQNRITVNELAQT 98

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 117

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 35.2 bits (80), Expect = 0.004
 Identities = 31/100 (31%), Positives = 43/100 (43%), Gaps = 5/100 (5%)

Query: 223 PRNSALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVP---VTLVYSR-RLLKH 278
           P     IS+++ F L   P + L +GG  ++VE A   N        VTL Y    +L+ 
Sbjct: 2   PGIEHCISSNEAFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRG 61

Query: 279 FDQEMVRILLSSLTKAGVSIQC-CVIEKVISSFDGMKGVR 317
           FD  +   L   LT  G+ I       KV  + DG K V 
Sbjct: 62  FDHTLREELTKQLTANGIQILTKENPAKVELNADGSKSVT 101

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	535
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.91
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.9
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	99.89
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	99.88
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	99.88
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.86
d3grsa3	115	Glutathione reductase {Human (Homo sapiens) [TaxId	99.85
d1onfa3	119	Glutathione reductase {Plasmodium falciparum [TaxI	99.84
d1v59a3	123	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.84
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	99.84
d1gesa3	115	Glutathione reductase {Escherichia coli [TaxId: 56	99.84
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.84
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	99.84
d1dxla3	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.83
d3lada3	124	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.83
d1xdia2	118	Dihydrolipoamide dehydrogenase {Mycobacterium tube	99.83
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.83
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.83
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.83
d1ojta3	128	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.83
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.83
d1lvla3	123	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.82
d1feca3	128	Trypanothione reductase {Crithidia fasciculata [Ta	99.82
d1ebda3	115	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.82
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.82
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	99.81
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.81
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	99.8
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	99.8
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.8
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.79
d1mo9a3	140	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.79
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	99.79
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	99.79
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	99.79
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.79
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.79
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.78
d1h6va3	133	Mammalian thioredoxin reductase {Rat (Rattus norve	99.77
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.77
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.75
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	99.75
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	99.73
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	99.72
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	99.71
d1nhpa3	126	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.68
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	99.66
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	99.66
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.65
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.65
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.64
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	99.62
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.61
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	99.58
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.56
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	99.54
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	99.45
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	99.39
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	99.34
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	99.24
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	99.21
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	99.17
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	99.15
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	99.04
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.03
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	98.98
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	98.91
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	98.91
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.9
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.89
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	98.81
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	98.78
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	98.76
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	98.73
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	98.71
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	98.64
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	98.63
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.62
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	98.59
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	98.58
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	98.52
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	98.49
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	98.46
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.46
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	98.46
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	98.45
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.45
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	98.45
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	98.42
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	98.42
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	98.4
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	98.39
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.37
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.37
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.35
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	98.33
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	98.29
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	98.25
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	98.23
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.22
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.21
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	98.15
d1ktea_	105	Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr	98.12
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	98.12
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	98.11
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	98.09
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	98.07
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.07
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	98.07
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	98.06
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	98.04
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.03
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.03
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	98.02
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	98.0
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	97.98
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	97.92
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	97.92
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	97.87
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	97.86
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	97.86
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	97.86
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	97.85
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	97.84
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	97.82
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	97.8
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	97.79
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	97.76
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	97.76
d1wika_	109	Thioredoxin-like protein 2 {Mouse (Mus musculus) [	97.75
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	97.74
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	97.63
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	97.62
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	97.62
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	97.62
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	97.6
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	97.58
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	97.54
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	97.54
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	97.52
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	97.46
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	97.45
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	97.4
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	97.39
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	97.28
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	97.28
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	97.11
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	97.06
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	97.05
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	97.03
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	97.02
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	97.01
d1fova_	82	Glutaredoxin (Grx, thioltransferase) {Escherichia	96.98
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	96.93
d1nm3a1	74	C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus	96.88
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	96.81
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	96.77
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	96.73
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	96.73
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	96.68
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	96.66
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	96.65
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	96.64
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	96.54
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	96.52
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	96.41
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	96.4
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	96.38
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	96.35
d1h75a_	76	Glutaredoxin-like NRDH-redoxin {Escherichia coli [	96.33
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	96.33
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	96.32
d1r7ha_	74	Glutaredoxin-like NRDH-redoxin {Corynebacterium am	96.32
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	96.28
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	96.23
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	96.2
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	96.19
d1egoa_	85	Glutaredoxin (Grx, thioltransferase) {Escherichia	96.15
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	96.12
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	96.01
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	95.91
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	95.89
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	95.85
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	95.68
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	95.62
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	95.58
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	95.53
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	95.46
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	95.43
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	95.34
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	95.31
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	95.29
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	95.23
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	95.05
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	94.94
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	94.85
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	94.79
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	94.76
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	94.64
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	94.61
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	94.18
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	94.16
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	94.07
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	93.89
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	93.6
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	93.49
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	93.23
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	93.04
d1fcda2	141	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	93.01
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	92.71
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	92.6
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	92.23
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	92.09
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	92.01
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	91.71
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	91.66
d1abaa_	87	Glutaredoxin (Grx, thioltransferase) {Bacteriophag	91.65
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	91.53
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	91.27
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	91.01
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	90.81
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	90.33
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	90.16
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	90.06
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	89.47
d1wjka_	100	Thioredoxin-like structure containing protein C330	89.06
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	88.27
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	88.27
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	88.08
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	87.85
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	87.35
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	87.26
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	86.62
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	86.6
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	85.31
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	85.21
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	85.2
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	84.98
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	84.77
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	84.51
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	84.43
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	84.18
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	83.38
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	82.9
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	82.81
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	82.73
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	82.72
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	82.65
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	82.53
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	82.37
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	82.31
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	82.0
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	81.81
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	81.69
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	81.28
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	80.49
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	80.11
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	80.08
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	80.07
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	80.06

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.91  E-value=1e-23  Score=198.88  Aligned_cols=207  Identities=17%  Similarity=0.224  Sum_probs=159.7

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccc-------ccccccccccccchhhcccccc-cccccccCHHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFR-------KKRRLYYPVAMSDLELEQDSTS-ALNVTIRNWNAA  160 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~-------~~~l~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~l  160 (535)
                      +|++|||+||+|+.+|+...+.+.+|+|||++.. ++.       +...+...............+. ......+++..+
T Consensus         4 ~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~~-GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (223)
T d1ebda1           4 TETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGNL-GGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAENVTIDFAKV   82 (223)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCT-THHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECCSCEECHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCEEEEEecCCC-CcceeccccccccccccccchhhhhhhhhhhcccchhheeeHHHH
Confidence            6789999999999999999999999999999762 110       0000000000000000111111 112446788889


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEc----eeEEEcceEEEeeCceecCCCCCCceechhhHHh
Q psy14461        161 TKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLS----NRSVTGFNFLLAVERRCLPEPRNSALISADDLFR  236 (535)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~----~~~~~~d~lViATGs~p~~~i~G~~v~~~~~~~~  236 (535)
                      ..+....+.++...+...++..+|+++.|++.+.+.....+.    ...+..|.+|||+|+.|..               
T Consensus        83 ~~~~~~~v~~l~~~~~~~~~~~~V~~i~G~a~f~~~~~~~v~~~~~~~~~~~~~iiIa~g~~p~~---------------  147 (223)
T d1ebda1          83 QEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDANTVRVVNGDSAQTYTFKNAIIATGSRPIE---------------  147 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTCEEEESEEEEEETTEEEEEETTEEEEEECSEEEECCCEEECC---------------
T ss_pred             hhHHHHHHHHHHhhHHHhhhccceeeeccEEEEccCcccceeccccceEEecccEEEEcCCCccc---------------
Confidence            999988998888888888899999999999999888776663    2678999999999988731               


Q ss_pred             ccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEcCcCCccCcHHHHHHHHHhhhcCCeEEcceEEEEEEEeCCCcEEE
Q psy14461        237 LGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVSIQCCVIEKVISSFDGMKGV  316 (535)
Q Consensus       237 ~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~i~~~~v~~i~~~~~~~~~v  316 (535)
                                                                                                      
T Consensus       148 --------------------------------------------------------------------------------  147 (223)
T d1ebda1         148 --------------------------------------------------------------------------------  147 (223)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCCCcHHHHHHHH
Q psy14461        317 RGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISA  396 (535)
Q Consensus       317 ~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~~~~~~A~~~g  396 (535)
                                          ++|++||++.|+++.+|+++|++|+|.||+++|||+|+|||+|||+ +++.+++.|..||
T Consensus       148 --------------------~~G~~p~~~~l~l~~~gv~~~~~G~I~vd~~~~T~~~gvyA~GDv~-~~~~~~~~A~~~g  206 (223)
T d1ebda1         148 --------------------LVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCRTSVPNIFAIGDIV-PGPALAHKASYEG  206 (223)
T ss_dssp             --------------------BSCEEESCSSSSTTTTTCCBCTTSCBCCCTTCBCSSTTEEECGGGS-SSCCCHHHHHHHH
T ss_pred             --------------------cccceecCCCCChHhcCceECCCCCEeECCCCCCCCCCEEEEeccC-CCcccHHHHHHHH
Confidence                                1467789988888999999999999999999999999999999999 8999999999999


Q ss_pred             HHHHHHHhCCCCCCCCC
Q psy14461        397 RLIIERLYGMQDQLMDY  413 (535)
Q Consensus       397 ~~aa~~i~g~~~~~~~~  413 (535)
                      ++||++|+|.+ .+++|
T Consensus       207 ~~aa~~i~g~~-~~~dy  222 (223)
T d1ebda1         207 KVAAEAIAGHP-SAVDY  222 (223)
T ss_dssp             HHHHHHHTSCC-CCCCC
T ss_pred             HHHHHHHcCCC-CCCCC
Confidence            99999999965 34555

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.90  E-value=5.8e-23  Score=193.51  Aligned_cols=201  Identities=16%  Similarity=0.115  Sum_probs=152.9

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccc---cc-----cccccccchhhccccc-ccccccccCHH
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKR---RL-----YYPVAMSDLELEQDST-SALNVTIRNWN  158 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~---l~-----~~~~~i~~~~~~~~~~-~~~~~~~~~~~  158 (535)
                      .+|++|||+||+|+.+|+.....+.+|+|||+++.+++....   .+     ............+... .......+.+.
T Consensus         3 ~yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~GG~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~~   82 (221)
T d1dxla1           3 ENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNVEIDLA   82 (221)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEESCEEECHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCCeeecchhhhhhhhhHhHHHHHHHhhhhhhcCeecccceecHH
Confidence            378999999999999999999999999999998876432100   00     0000000000000000 01113345677


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEce-----eEEEcceEEEeeCceecCCCCCCceechhh
Q psy14461        159 AATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSN-----RSVTGFNFLLAVERRCLPEPRNSALISADD  233 (535)
Q Consensus       159 ~l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~-----~~~~~d~lViATGs~p~~~i~G~~v~~~~~  233 (535)
                      ....++......+...+...++..+|+++.+.+.+.++.......     ..+.+|+||||||++|              
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~a~~VIiATGs~~--------------  148 (221)
T d1dxla1          83 AMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVSPSEISVDTIEGENTVVKGKHIIIATGSDV--------------  148 (221)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEEEETTEEEECCSSSCCEEEECSEEEECCCEEE--------------
T ss_pred             HHHHHHHHHHHHHhhHHHHhhhcCCeEEEEeccccccccccccccccccccccccceEEEeECCCc--------------
Confidence            777777777777877788888889999999998888877666532     6789999999999764              


Q ss_pred             HHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEcCcCCccCcHHHHHHHHHhhhcCCeEEcceEEEEEEEeCCCc
Q psy14461        234 LFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVSIQCCVIEKVISSFDGM  313 (535)
Q Consensus       234 ~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~i~~~~v~~i~~~~~~~  313 (535)
                                                                                                      
T Consensus       149 --------------------------------------------------------------------------------  148 (221)
T d1dxla1         149 --------------------------------------------------------------------------------  148 (221)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCCCcHHHHH
Q psy14461        314 KGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAA  393 (535)
Q Consensus       314 ~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~~~~~~A~  393 (535)
                                              .|+.|+++.++++.+|+++|++|+|.||+++|||+|+|||+|||+ ++|.+++.|.
T Consensus       149 ------------------------~gr~p~~~~l~l~~~gv~~~~~G~i~vd~~~~T~v~gi~A~GDv~-~g~~l~~~A~  203 (221)
T d1dxla1         149 ------------------------KGRTPFTSGLNLDKIGVETDKLGRILVNERFSTNVSGVYAIGDVI-PGPMLAHKAE  203 (221)
T ss_dssp             ------------------------CCEEECCTTSCCTTTTCCBCSSSCBCCCTTCBCSSTTEEECSTTS-SSCCCHHHHH
T ss_pred             ------------------------cCccccCCCCChHhcCceEcCCCcEEeCCCcccCCCCEEEEeccC-CCcccHHHHH
Confidence                                    155678887777899999999999999999999999999999999 8999999999


Q ss_pred             HHHHHHHHHHhCCC
Q psy14461        394 ISARLIIERLYGMQ  407 (535)
Q Consensus       394 ~~g~~aa~~i~g~~  407 (535)
                      .+|++||++|+|+.
T Consensus       204 ~~g~~aa~~i~g~~  217 (221)
T d1dxla1         204 EDGVACVEYLAGKV  217 (221)
T ss_dssp             HHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHcCCC
Confidence            99999999999865

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.89  E-value=5.7e-22  Score=188.55  Aligned_cols=206  Identities=18%  Similarity=0.197  Sum_probs=150.6

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccc-------c----ccccc----cccccchhh--ccccccccc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRK-------K----RRLYY----PVAMSDLEL--EQDSTSALN  151 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~-------~----~l~~~----~~~i~~~~~--~~~~~~~~~  151 (535)
                      +|++|||+||+|+.+|+++...+.+|+|||+.+..+...       |    .+|..    ...+.....  ...+.....
T Consensus         4 YDviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~~~~~~~~~~GG~c~~~g~~~~k~l~~~~~~~~~~~~~~~~gi~~~~   83 (235)
T d1h6va1           4 FDLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTPLGTNWGLGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWKLED   83 (235)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGCCCEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTTTTBCCCS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccccccccccccccchhhhhhhhhhhhHhhhhhcccccccc
Confidence            789999999999999999999999999999876321110       0    01100    000000000  011222223


Q ss_pred             ccccCHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEce-----eEEEcceEEEeeCceecC-CCCC
Q psy14461        152 VTIRNWNAATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSN-----RSVTGFNFLLAVERRCLP-EPRN  225 (535)
Q Consensus       152 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~-----~~~~~d~lViATGs~p~~-~i~G  225 (535)
                      ....+|..+..++...+..+...+...++..+|+++.|+..+.+++.+.+..     ..+.++.++++||++|+. ++  
T Consensus        84 ~~~~d~~~~~~~~~~~i~~l~~g~~~~l~~~~V~vi~G~~~~~~~~~~~v~~~~~~~~~i~a~~ivi~~G~~p~~~~i--  161 (235)
T d1h6va1          84 TVKHDWEKMTESVQNHIGSLNWGYRVALREKKVVYENAYGKFIGPHKIMATNNKGKEKVYSAERFLIATGERPRYLGI--  161 (235)
T ss_dssp             CCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEECCEEEEEETTEEEEECTTSCEEEEEEEEEEECCCEEECCCSS--
T ss_pred             ceeechhhhhheeeeeeeeccchhhhhhhccCceEEEeEEeeccccceecccccccccccccccceeecCCCceeEEE--
Confidence            4568999999999999999988888899999999999999999888877743     568999999999999975 22  


Q ss_pred             CceechhhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEcCcCCccCcHHHHHHHHHhhhcCCeEEcceEEEE
Q psy14461        226 SALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVSIQCCVIEK  305 (535)
Q Consensus       226 ~~v~~~~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~i~~~~v~~  305 (535)
                                                                                                      
T Consensus       162 --------------------------------------------------------------------------------  161 (235)
T d1h6va1         162 --------------------------------------------------------------------------------  161 (235)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecC-CCceEcCCCCCcCCCCEEEeCCcCCC
Q psy14461        306 VISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKK-KSYVVCNEKDQTSVGNIFAVGGIVHG  384 (535)
Q Consensus       306 i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~-~G~i~vd~~~~T~~~~IyA~GD~~~~  384 (535)
                       ...             +..                    .+.++..++++++ .|+|.||++||||+|+|||+|||+.+
T Consensus       162 -~~~-------------~~~--------------------~~~l~~~gv~l~~~~g~I~vd~~~~TsvpgIyA~GDv~~g  207 (235)
T d1h6va1         162 -RDS-------------CTR--------------------TIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEG  207 (235)
T ss_dssp             -EEE-------------SCT--------------------TSCCTTTTCCCCSSSCCBCCCTTSBCSSTTEEECGGGBTT
T ss_pred             -eec-------------cce--------------------eeccccceeeeccccCccccCCccccCCCCEEEEEeccCC
Confidence             000             000                    0112445666665 59999999999999999999999845


Q ss_pred             CCCcHHHHHHHHHHHHHHHhCCCCCC
Q psy14461        385 KPNNASMAAISARLIIERLYGMQDQL  410 (535)
Q Consensus       385 ~~~~~~~A~~~g~~aa~~i~g~~~~~  410 (535)
                      .+++++.|+.||++||++|+|..+..
T Consensus       208 ~~~l~~~A~~eG~~aa~~~~g~~~~~  233 (235)
T d1h6va1         208 KLELTPVAIQAGRLLAQRLYGGSTVK  233 (235)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_pred             CcccHHHHHHHHHHHHHHHcCCCCCC
Confidence            66799999999999999999866543

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.88  E-value=2.8e-22  Score=190.89  Aligned_cols=204  Identities=14%  Similarity=0.151  Sum_probs=137.0

Q ss_pred             EEEEeeCCccHHHHHHHHHhh---CCCeEEEEecCCcccccc--cc-ccc----ccccccchhhccccc--c-ccccccc
Q psy14461         89 LYLDRIGDEGILLEEELKRQT---NQRRDELQERGSHLSFRK--KR-RLY----YPVAMSDLELEQDST--S-ALNVTIR  155 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~---~~~~V~lie~~~~~~~~~--~~-l~~----~~~~i~~~~~~~~~~--~-~~~~~~~  155 (535)
                      -+|+|||+||+|+.+|++...   .+.+|+|+|++. +++..  .+ +|.    ....+.......+.+  . ......+
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~-~GG~cln~GciPsK~ll~~a~~~~~~~~~~~~G~~i~~~~~~~   80 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG-IGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFHIDFDDAKI   80 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTBC------CB
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCC-CCceeecccccccEEEEeecchhhhhhhhhhcCCcccccCcee
Confidence            478999999999999987543   346899999865 22210  00 111    000000000111111  1 1224568


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecC------CEEEEc--e---eEEEcceEEEeeCceecC-CC
Q psy14461        156 NWNAATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNP------HTIKLS--N---RSVTGFNFLLAVERRCLP-EP  223 (535)
Q Consensus       156 ~~~~l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~------~~v~~~--~---~~~~~d~lViATGs~p~~-~i  223 (535)
                      ||..+..+.+..+..+...+...++..+|+++.|++.+.+.      +.+.+.  +   .++.+|.+|+|||++|+. +.
T Consensus        81 d~~~~~~~~~~v~~~~~~~~~~~~~~~gV~vi~G~~~~~~~~~~~~~~~v~v~~~dg~~~~i~ad~viiAtG~~p~~~~~  160 (233)
T d1xdia1          81 SLPQIHARVKTLAAAQSADITAQLLSMGVQVIAGRGELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPRILPS  160 (233)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECCSSSCCSSEEEEEECTTSCEEEEEESEEEECCCEEECCCGG
T ss_pred             eeeeeccccceeeeeeecceehhhcccceeEEECcccccccccccccceEEEEecCCceeeeecceeeeecCcccccccc
Confidence            99999999998888888888889999999999988766443      233331  1   345555555555555532 00


Q ss_pred             CCCceechhhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEcCcCCccCcHHHHHHHHHhhhcCCeEEcceEE
Q psy14461        224 RNSALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVSIQCCVI  303 (535)
Q Consensus       224 ~G~~v~~~~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~i~~~~v  303 (535)
                                                                                                      
T Consensus       161 --------------------------------------------------------------------------------  160 (233)
T d1xdia1         161 --------------------------------------------------------------------------------  160 (233)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCC
Q psy14461        304 EKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVH  383 (535)
Q Consensus       304 ~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~  383 (535)
                                                         |+.|+.+.++++..+++++++|+|.||++|||+.|+|||+|||+ 
T Consensus       161 -----------------------------------~~~~~~~~l~l~~~gv~~~~~G~I~vd~~~~T~~~gIyA~GDv~-  204 (233)
T d1xdia1         161 -----------------------------------GSVPNTSGLGLERVGIQLGRGNYLTVDRVSRTLATGIYAAGDCT-  204 (233)
T ss_dssp             -----------------------------------CEEECCSSSCTTTTTCCCBTTTBCCCCSSSBCSSTTEEECSGGG-
T ss_pred             -----------------------------------cccccccccccchhhhcccCCCcCCcCCCcccCCCCEEEEEEeC-
Confidence                                               01112233445778899999999999999999999999999999 


Q ss_pred             CCCCcHHHHHHHHHHHHHHHhCCCCC
Q psy14461        384 GKPNNASMAAISARLIIERLYGMQDQ  409 (535)
Q Consensus       384 ~~~~~~~~A~~~g~~aa~~i~g~~~~  409 (535)
                      +.+++++.|..||++||.||+|....
T Consensus       205 ~~~~l~~~A~~~g~~aa~~~~g~~~~  230 (233)
T d1xdia1         205 GLLPLASVAAMQGRIAMYHALGEGVS  230 (233)
T ss_dssp             TSCSCHHHHHHHHHHHHHHHTTCCCC
T ss_pred             CCchhHHHHHHHHHHHHHHHcCCCCC
Confidence            88999999999999999999986543

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=5.1e-22  Score=187.04  Aligned_cols=205  Identities=19%  Similarity=0.178  Sum_probs=155.2

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccc--ccccccccc-cccc---hhhccccc-ccccccccCHHHH
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFR--KKRRLYYPV-AMSD---LELEQDST-SALNVTIRNWNAA  160 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~--~~~l~~~~~-~i~~---~~~~~~~~-~~~~~~~~~~~~l  160 (535)
                      -+|++|||+||+|+.+|++....+.+|+|+|++..-+..  ...+|.... ..+.   .......+ .......++|...
T Consensus         3 ~yDviIIG~GpaG~~aA~~aar~G~kV~vIEk~~~GG~c~n~g~~~~k~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (221)
T d3grsa1           3 SYDYLVIGGGSGGLASARRAAELGARAAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFNWRVI   82 (221)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGTSCCCCCCCCHHHH
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCEEEEEeccCCCCccccchhhhhhhhhhHHHHHHHHhhhhhccccccccchhhhhh
Confidence            368999999999999999999999999999997531100  000111000 0000   00000011 1122456789999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEE--ceeEEEcceEEEeeCceecCCCCCCceechhhHHhcc
Q psy14461        161 TKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKL--SNRSVTGFNFLLAVERRCLPEPRNSALISADDLFRLG  238 (535)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~--~~~~~~~d~lViATGs~p~~~i~G~~v~~~~~~~~~~  238 (535)
                      ..+++..+..+.......++..+|+++.|++.+...+.++.  ....+.++.++||||++|..  |.             
T Consensus        83 ~~~~~~~v~~~~~~~~~~~~~~gV~~i~G~a~~~~~~~~~~~~~~~~~~~~~~~iatG~~p~v--p~-------------  147 (221)
T d3grsa1          83 KEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSGKKYTAPHILIATGGMPST--PH-------------  147 (221)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEECSCSSCEEEETTEEEECSCEEECCCEEECC--CC-------------
T ss_pred             hhhhheEEeeeccchhhhhccCceEEEEEeeeeccccceeeeeeccccccceeEEecCccccC--CC-------------
Confidence            99999888888888888899999999999988876654443  44789999999999999854  10             


Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEcCcCCccCcHHHHHHHHHhhhcCCeEEcceEEEEEEEeCCCcEEEEE
Q psy14461        239 AWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVSIQCCVIEKVISSFDGMKGVRG  318 (535)
Q Consensus       239 ~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~i~~~~v~~i~~~~~~~~~v~~  318 (535)
                                                                                                      
T Consensus       148 --------------------------------------------------------------------------------  147 (221)
T d3grsa1         148 --------------------------------------------------------------------------------  147 (221)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCCCcHHHHHHHHHH
Q psy14461        319 FHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARL  398 (535)
Q Consensus       319 ~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~~~~~~A~~~g~~  398 (535)
                                          |+.||++.|+|+..|++++++|+|.||+++|||+|+|||+|||+ +++++++.|..+|++
T Consensus       148 --------------------~r~p~~~~l~L~~~gv~~~~~G~I~vd~~~~T~~~gvyA~GDv~-~~~~l~~~A~~~G~~  206 (221)
T d3grsa1         148 --------------------ERVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAVGDVC-GKALLTPVAIAAGRK  206 (221)
T ss_dssp             --------------------TEEESCTTTTGGGTTCCBCTTSCBCCCTTCBCSSTTEEECGGGG-TSSCCHHHHHHHHHH
T ss_pred             --------------------ccccCCCCcCchhcCcEECCCccEEeCCCccccCCcEEEEEEcc-CCcCcHHHHHHHHHH
Confidence                                23566777778899999999999999999999999999999999 888999999999999


Q ss_pred             HHHHHhCCCC
Q psy14461        399 IIERLYGMQD  408 (535)
Q Consensus       399 aa~~i~g~~~  408 (535)
                      ||++|++...
T Consensus       207 aa~~~~~~~~  216 (221)
T d3grsa1         207 LAHRLFEYKE  216 (221)
T ss_dssp             HHHHHHSCCT
T ss_pred             HHHHHcCCCC
Confidence            9999998653

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.86  E-value=3.3e-21  Score=178.58  Aligned_cols=158  Identities=17%  Similarity=0.120  Sum_probs=120.9

Q ss_pred             cEEEECCChHHHHHHHHHHhCC--CcEEEEEc-CcCCccCcHH--------------HHHHHHHhhhcCCeEE-cceEEE
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLG--VPVTLVYS-RRLLKHFDQE--------------MVRILLSSLTKAGVSI-QCCVIE  304 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g--~~Vtlv~~-~~~l~~~~~~--------------~~~~~~~~l~~~gV~i-~~~~v~  304 (535)
                      ||+|||||++|+|+|..|++++  .+|+++++ +.+ +..+..              +.....+.++++||++ .+++|+
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~V~   80 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFI-SFLSAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEIT   80 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSS-SBCGGGHHHHHTTSSCCGGGSBSCCHHHHHHTTCEEEETEEEE
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcc-cccccCcchhhcccccchHHHHHhhHHHHHHCCcEEEEeecee
Confidence            6999999999999999999985  57999998 544 211111              1112245677889999 999999


Q ss_pred             EEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCC--------CCCCCccccCeeecCCCceEcCCCCCcCCCCEE
Q psy14461        305 KVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFD--------FAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIF  376 (535)
Q Consensus       305 ~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~--------~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~Iy  376 (535)
                      +|+.+ ++.  |++++..+|+++++++|.+++|+|..|+        +.++  + .+++++++|+|.||+++||+.|+||
T Consensus        81 ~i~~~-~~~--v~~~~~~~g~~~~~~~D~li~a~G~~~~~~~g~~~~~~~~--~-~~~~~~~~G~i~vd~~~~T~~~~Iy  154 (198)
T d1nhpa1          81 AIQPK-EHQ--VTVKDLVSGEERVENYDKLIISPGAVPFELDGVRPNTAWL--K-GTLELHPNGLIKTDEYMRTSEPDVF  154 (198)
T ss_dssp             EEETT-TTE--EEEEETTTCCEEEEECSEEEECCCEEECCCCCEEESCGGG--T-TTSCBCTTSCBCCCTTCBCSSTTEE
T ss_pred             eEeec-ccc--ceeeecccccccccccceeeEeecceeecccccccccccc--c-ccceeccCCceecCCcccccccceE
Confidence            99875 343  4443335788788999999999987654        3333  2 2577788999999999999999999


Q ss_pred             EeCCcCC------C---CCCcHHHHHHHHHHHHHHHhCCC
Q psy14461        377 AVGGIVH------G---KPNNASMAAISARLIIERLYGMQ  407 (535)
Q Consensus       377 A~GD~~~------~---~~~~~~~A~~~g~~aa~~i~g~~  407 (535)
                      |+|||+.      +   ...++..|.+||+.||+||.+..
T Consensus       155 A~GD~a~~~~~~~~~~~~~~~a~~A~~~g~~aa~ni~~~~  194 (198)
T d1nhpa1         155 AVGDATLIKYNPADTEVNIALATNARKQGRFAVKNLEEPV  194 (198)
T ss_dssp             ECGGGSCEEEGGGTEEECCCCHHHHHHHHHHHHHTSSSCC
T ss_pred             EecceeecccccCCCcccccHHHHHHHHHHHHHHhhCCCC
Confidence            9999984      1   12367789999999999998754

>d3grsa3 d.87.1.1 (A:364-478) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=2.2e-21  Score=162.66  Aligned_cols=100  Identities=31%  Similarity=0.559  Sum_probs=88.0

Q ss_pred             CCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcchhhhhhccCCcccccccccCcceEEE
Q psy14461        413 YSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVK  492 (535)
Q Consensus       413 ~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~K  492 (535)
                      |..+|+++|++||+|+||+||+||+++++..++.+...++....++. ..                      +++.||+|
T Consensus         1 Y~~vP~~vft~PeiA~VGltE~eA~~~~~~~~v~~~~~~~~~~~~a~-~~----------------------~~~~g~~k   57 (115)
T d3grsa3           1 YNNIPTVVFSHPPIGTVGLTEDEAIHKYGIENVKTYSTSFTPMYHAV-TK----------------------RKTKCVMK   57 (115)
T ss_dssp             CTTCCEEECCSSCEEEEECCHHHHHHHHCGGGEEEEEEEECCGGGGG-CS----------------------SCCCEEEE
T ss_pred             CCCCCEEecCcCccEEEecCcHHHHHHhCCcccceeEeeeeecchhh-cc----------------------cccceeEE
Confidence            56799999999999999999999998876556888888887766654 22                      25789999


Q ss_pred             EEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461        493 LVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT  535 (535)
Q Consensus       493 li~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~  535 (535)
                      +++|+++++|||+|++|++|+|+|+.++++|++++|++||+++
T Consensus        58 ~i~~~~~~~ilG~~ivG~~A~ElI~~~~~ai~~~~t~~~l~~~  100 (115)
T d3grsa3          58 MVCANKEEKVVGIHMQGLGCDEMLQGFAVAVKMGATKADFDNT  100 (115)
T ss_dssp             EEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTS
T ss_pred             EEEecCCceEEEEEEeccCHHHHHHHHHHHHHcCCCHHHHhhC
Confidence            9999999999999999999999999999999999999999875

>d1onfa3 d.87.1.1 (A:377-495) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.84  E-value=7.7e-21  Score=160.55  Aligned_cols=104  Identities=32%  Similarity=0.612  Sum_probs=87.6

Q ss_pred             CCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcchhhhhhccCCcccccccccCcceEEE
Q psy14461        413 YSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVK  492 (535)
Q Consensus       413 ~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~K  492 (535)
                      |..+|+++|++||+|+||+||+||+++++..++.+....+..+.++. ..+.                  ..+...||+|
T Consensus         1 Y~~vP~~vfT~PeiA~VGlte~~A~~~~~~~~v~~~~~~~~~~~~~~-~~~~------------------~~~~~~g~~k   61 (119)
T d1onfa3           1 YKLIPTVIFSHPPIGTIGLSEEAAIQIYGKENVKIYESKFTNLFFSV-YDIE------------------PELKEKTYLK   61 (119)
T ss_dssp             CSSCCEEECCSSCEEEEECCHHHHHHHTCGGGEEEEEEEECCGGGTT-SCSC------------------GGGSCCEEEE
T ss_pred             CCcCCeEeccCCccEEEECCHHHHHHhcccccccccccccCccccch-hhhh------------------hccCCCceEE
Confidence            56799999999999999999999999977556777776666555543 2221                  1225679999


Q ss_pred             EEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461        493 LVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT  535 (535)
Q Consensus       493 li~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~  535 (535)
                      +++++++++|||+|++|++|+|||+.+++||++++|++||.++
T Consensus        62 li~~~~~~~IlGa~ivG~~A~ElI~~~~~ai~~~~t~~~l~~~  104 (119)
T d1onfa3          62 LVCVGKDELIKGLHIIGLNADEIVQGFAVALKMNATKKDFDET  104 (119)
T ss_dssp             EEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTS
T ss_pred             EEEecCCCcEEEEEEeCCCHHHHHHHHHHHHHcCCcHHHHhhC
Confidence            9999999999999999999999999999999999999999875

>d1v59a3 d.87.1.1 (A:356-478) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=3.6e-21  Score=163.36  Aligned_cols=98  Identities=27%  Similarity=0.300  Sum_probs=87.3

Q ss_pred             CCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcchhhhhhccCCcccccccccCcceEEE
Q psy14461        413 YSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVK  492 (535)
Q Consensus       413 ~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~K  492 (535)
                      |..+|+++|++||+|+||+||+||++.+.  ++.+.+.++....++. ..                      +++.||+|
T Consensus         1 Y~~iP~~vft~PeiA~VGlte~eA~~~g~--~~~v~~~~~~~~~ra~-~~----------------------~~~~G~~K   55 (123)
T d1v59a3           1 YNNIPSVMYSHPEVAWVGKTEEQLKEAGI--DYKIGKFPFAANSRAK-TN----------------------QDTEGFVK   55 (123)
T ss_dssp             TTSCCEEECSSSEEEEEECCHHHHHHTTC--CEEEEEEEGGGCHHHH-HT----------------------TCCCCEEE
T ss_pred             CCCCCEEeecCCccEEEECCHHHHHhccc--CceEEEEecccccchh-cc----------------------CCCcEEEE
Confidence            56799999999999999999999999865  7888888887766654 22                      25789999


Q ss_pred             EEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461        493 LVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT  535 (535)
Q Consensus       493 li~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~  535 (535)
                      |++|++|++|||+|++|++|+|+|+.++++|++++|++||.++
T Consensus        56 li~d~~~~~ilGa~ivG~~A~elI~~~alai~~~~t~~~l~~~   98 (123)
T d1v59a3          56 ILIDSKTERILGAHIIGPNAGEMIAEAGLALEYGASAEDVARV   98 (123)
T ss_dssp             EEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTS
T ss_pred             EEEECCCCEEEEEEEEchHHHHHHHHHHHHHHcCCcHHHHHhc
Confidence            9999999999999999999999999999999999999999875

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.84  E-value=1.9e-20  Score=178.62  Aligned_cols=205  Identities=16%  Similarity=0.170  Sum_probs=146.8

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCC-CeEEEEecCCcccccc---------------cccccccccccchhhccccc--cc-
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQ-RRDELQERGSHLSFRK---------------KRRLYYPVAMSDLELEQDST--SA-  149 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~-~~V~lie~~~~~~~~~---------------~~l~~~~~~i~~~~~~~~~~--~~-  149 (535)
                      +|++|||+||||+.+|++....+ .+|+|+|+........               .....+...+.....+...+  .. 
T Consensus         4 YDvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~~~~~~~~~~iGGtc~~~gcip~K~l~~~a~~~~~~~~~~~~Gi~~~   83 (240)
T d1feca1           4 YDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKKLMVTGANYMDTIRESAGFGWELD   83 (240)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBSCTTCHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEECC
T ss_pred             cCEEEECCCHHHHHHHHHHHHcCCCEEEEEEEeccCCcccccccccccccccchhhhhcccccccccccccccccccccc
Confidence            78999999999999999877655 5799999876421110               00100000000000111111  11 


Q ss_pred             ccccccCHHHHHHHHHHHHHHHHHHHHHHHHhc-CcEEEEeEEEEecCCEEEEce---------eEEEcceEEEeeCcee
Q psy14461        150 LNVTIRNWNAATKLIKRFCIRAKNDSMRELKAL-GIDIVRTAAAFTNPHTIKLSN---------RSVTGFNFLLAVERRC  219 (535)
Q Consensus       150 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-gV~~~~g~~~~~~~~~v~~~~---------~~~~~d~lViATGs~p  219 (535)
                      .....+||+.+..++++.+..+...++..+... +++++.+.+.+.+...+....         +.+.+|.++||||++|
T Consensus        84 ~~~v~~d~~~l~~~k~~~v~~~~~~~~~~l~~~~~v~i~~g~a~~~~~~~~~~~~~~~~~~~~~e~i~~~~i~ia~G~~p  163 (240)
T d1feca1          84 RESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFHQGFGALQDNHTVLVRESADPNSAVLETLDTEYILLATGSWP  163 (240)
T ss_dssp             GGGCEECHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEEESEEEEEETTEEEEESSSSTTSCEEEEEEEEEEEECCCEEE
T ss_pred             ccccccCHHHHHHHhhcEEeccccceeeeeccCCcEEEEEeeccccccccccccccccccccceEEEecceEEEecCCce
Confidence            123467999999999999998888877777654 799999999887776654421         5688999999999988


Q ss_pred             cC-CCCCCceechhhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEcCcCCccCcHHHHHHHHHhhhcCCeEE
Q psy14461        220 LP-EPRNSALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVSI  298 (535)
Q Consensus       220 ~~-~i~G~~v~~~~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~i  298 (535)
                      .. ++                                                                         .+
T Consensus       164 ~~~~~-------------------------------------------------------------------------~~  170 (240)
T d1feca1         164 QHLGI-------------------------------------------------------------------------EV  170 (240)
T ss_dssp             CCCCS-------------------------------------------------------------------------BE
T ss_pred             eEccc-------------------------------------------------------------------------cc
Confidence            53 11                                                                         00


Q ss_pred             cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEe
Q psy14461        299 QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAV  378 (535)
Q Consensus       299 ~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~  378 (535)
                                                                 |+...|+++.++++++++|+|.||+++|||+|+|||+
T Consensus       171 -------------------------------------------~~~~~l~l~~~gv~~~~~G~I~vd~~~~Ts~~~iyA~  207 (240)
T d1feca1         171 -------------------------------------------PRSQTLQLEKAGVEVAKNGAIKVDAYSKTNVDNIYAI  207 (240)
T ss_dssp             -------------------------------------------ESCTTSCGGGGTCCBCTTSCBCCCTTCBCSSTTEEEC
T ss_pred             -------------------------------------------cccCCCCccccCeEECCCCcEEcCcccCcCCCCEEEE
Confidence                                                       1111234577789999999999999999999999999


Q ss_pred             CCcCCCCCCcHHHHHHHHHHHHHHHhCCCCCC
Q psy14461        379 GGIVHGKPNNASMAAISARLIIERLYGMQDQL  410 (535)
Q Consensus       379 GD~~~~~~~~~~~A~~~g~~aa~~i~g~~~~~  410 (535)
                      |||+ +++++++.|..||++||+++++.++.+
T Consensus       208 GDv~-~~~~~~~~A~~eg~~aa~~~~~~~~~~  238 (240)
T d1feca1         208 GDVT-DRVMLTPVAINEGAAFVDTVFANKPRA  238 (240)
T ss_dssp             GGGG-CSCCCHHHHHHHHHHHHHHHHSSCCCC
T ss_pred             EECC-CCccchhhHHHHHHHHHHHHhCCCCCC
Confidence            9999 899999999999999999999976543

>d1gesa3 d.87.1.1 (A:336-450) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=4.7e-21  Score=160.66  Aligned_cols=100  Identities=37%  Similarity=0.594  Sum_probs=87.5

Q ss_pred             CCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcchhhhhhccCCcccccccccCcceEEE
Q psy14461        413 YSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVK  492 (535)
Q Consensus       413 ~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~K  492 (535)
                      |..+|+++|++||+|+||+||+||+++++...+.+...++....++. ..                      +.+.||+|
T Consensus         1 Y~~vP~~vft~PeiA~VGlte~eA~~~~~~~~v~~~~~~~~~~~~a~-~~----------------------~~~~g~~k   57 (115)
T d1gesa3           1 YSNIPTVVFSHPPIGTVGLTEPQAREQYGDDQVKVYKSSFTAMYTAV-TT----------------------HRQPCRMK   57 (115)
T ss_dssp             CSSCCEEECCSSCEEEEECCHHHHHHHHCGGGEEEEEEEEECHHHHT-SS----------------------SCCEEEEE
T ss_pred             CCCCCeEecCCCccEEEeCCHHHHHHHcCCcccceeeeecccccccc-ee----------------------ccccceEE
Confidence            56799999999999999999999999876446777777777766654 21                      25789999


Q ss_pred             EEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461        493 LVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT  535 (535)
Q Consensus       493 li~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~  535 (535)
                      +++|+++++|||+|++|++|+|+|+.++++|++++|++||.++
T Consensus        58 ~v~~~~~~~IlGa~ivG~~A~ElI~~~~~ai~~~~t~~~l~~~  100 (115)
T d1gesa3          58 LVCVGSEEKIVGIHGIGFGMDEMLQGFAVALKMGATKKDFDNT  100 (115)
T ss_dssp             EEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTS
T ss_pred             EEEecCCcEEEEEEEECCCHHHHHHHHHHHHHcCCcHHHHhcC
Confidence            9999999999999999999999999999999999999999875

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.84  E-value=9.7e-21  Score=183.20  Aligned_cols=153  Identities=23%  Similarity=0.260  Sum_probs=113.0

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc--------------------------------------Cc-HH
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH--------------------------------------FD-QE  282 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~--------------------------------------~~-~~  282 (535)
                      .++|||+|+.|+++|..++++|.+|+++++ +.+...                                      .+ ..
T Consensus        44 DvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~lGG~c~n~GcvP~k~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (261)
T d1mo9a1          44 DAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMTEKVVGIKE  123 (261)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTSTTCCCCTTCCCCHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCccccccccccccchHHHHhhHHhHHHHHHhhhhccccccccccccHHH
Confidence            599999999999999999999999999998 654210                                      00 00


Q ss_pred             HHHHH------------HHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCc
Q psy14461        283 MVRIL------------LSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNL  349 (535)
Q Consensus       283 ~~~~~------------~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l  349 (535)
                      ....+            ...+...++.. .+...+ +..  +.  +|..    +|+  ++++|.+++|+|.+|++..+..
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~d--~~--~v~~----~g~--~i~ad~viiAtG~~P~~~~i~~  192 (261)
T d1mo9a1         124 VVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAK-VID--NH--TVEA----AGK--VFKAKNLILAVGAGPGTLDVPE  192 (261)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCE-EEE--TT--EEEE----TTE--EEEBSCEEECCCEECCCCCSTC
T ss_pred             HHHHHHHHHHhhhhhHHHHhhhcccceeEeeeEEE-Eee--ec--cccc----ccc--eEeeeeeeeccCCCCCcCcccc
Confidence            11000            11112222222 222211 111  11  2443    566  8999999999999999987754


Q ss_pred             cc--------cCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCCCcHHHHHHHHHHHHHHHhCCC
Q psy14461        350 HH--------IGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQ  407 (535)
Q Consensus       350 ~~--------~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g~~  407 (535)
                      ..        +|++++++|+|.||++||||+|+|||+|||+ ++|++++.|..||++||.||+|++
T Consensus       193 ~~~~~~l~~~~Gl~~~~~G~I~Vn~~~~Ts~~~IyA~GDv~-~~~~l~~~A~~~G~~aa~~i~G~k  257 (261)
T d1mo9a1         193 QPRSAELAKILGLDLGPKGEVLVNEYLQTSVPNVYAVGDLI-GGPMEMFKARKSGCYAARNVMGEK  257 (261)
T ss_dssp             EECCHHHHHHHTCCBCTTSCBCCCTTSBCSSTTEEECGGGG-CSSCSHHHHHHHHHHHHHHHTTCC
T ss_pred             cccccccccceeeeeccCCEEEeCCCcccCCCCEEEEEEeC-CCcccHHHHHHHHHHHHHHHCCCC
Confidence            32        5799999999999999999999999999999 899999999999999999999965

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=1.2e-20  Score=159.06  Aligned_cols=113  Identities=20%  Similarity=0.307  Sum_probs=105.3

Q ss_pred             CCCC-CceechhhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-
Q psy14461        222 EPRN-SALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-  298 (535)
Q Consensus       222 ~i~G-~~v~~~~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-  298 (535)
                      +||| +.++++++++.+++.|++++|||||++|+|+|..|+++|.+||++++ ++++|.+++++.+.+++.|+++||++ 
T Consensus         1 diPG~e~~~t~~~~~~l~~~p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l~~~d~~~~~~~~~~l~~~GV~~~   80 (116)
T d1gesa2           1 DIPGVEYGIDSDGFFALPALPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPSFDPMISETLVEVMNAEGPQLH   80 (116)
T ss_dssp             CSTTGGGSBCHHHHHHCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHSCEEE
T ss_pred             CcCCccccCCHHHHhChhhCCCEEEEECCChhhHHHHHHhhccccEEEEEeecchhhhhcchhhHHHHHHHHHHCCCEEE
Confidence            4899 88899999999999999999999999999999999999999999999 99999999999999999999999999 


Q ss_pred             cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccC
Q psy14461        299 QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAME  339 (535)
Q Consensus       299 ~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G  339 (535)
                      +++.++++...+++.+.++++   +|+  ++++|.|++|+|
T Consensus        81 ~~~~v~~i~~~~~~~~~v~~~---~g~--~~~~D~vi~a~G  116 (116)
T d1gesa2          81 TNAIPKAVVKNTDGSLTLELE---DGR--SETVDCLIWAIG  116 (116)
T ss_dssp             CSCCEEEEEECTTSCEEEEET---TSC--EEEESEEEECSC
T ss_pred             eCCEEEEEEEcCCcEEEEEEC---CCC--EEEcCEEEEecC
Confidence            999999998875566778773   787  899999999998

>d1dxla3 d.87.1.1 (A:348-470) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.83  E-value=5.3e-21  Score=162.33  Aligned_cols=98  Identities=20%  Similarity=0.315  Sum_probs=87.0

Q ss_pred             CCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcchhhhhhccCCcccccccccCcceEEE
Q psy14461        413 YSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVK  492 (535)
Q Consensus       413 ~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~K  492 (535)
                      |..+|+++|++||+|+||+||+||++.+.  ++.+...++....++. ..                      +++.||+|
T Consensus         1 Y~~iP~~vft~PeiA~vGlte~~A~~~g~--~~~~~~~~~~~~~ra~-~~----------------------~~~~G~~K   55 (123)
T d1dxla3           1 YDKVPGVVYTNPEVASVGKTEEQVKETGV--EYRVGKFPFMANSRAK-AI----------------------DNAEGLVK   55 (123)
T ss_dssp             TTSCCEEECSSSEEEEEECCHHHHHHTTC--CEEEEEEEGGGCHHHH-HH----------------------SCCCCEEE
T ss_pred             CCCCCEEeecCCceEEEECCHHHHHHcCC--CEEEEEEeccccchhh-hc----------------------CCCcceEE
Confidence            56799999999999999999999999854  7888888887766654 11                      25789999


Q ss_pred             EEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461        493 LVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT  535 (535)
Q Consensus       493 li~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~  535 (535)
                      |++|+++++|||+|++|++|+|+|+.++++|++++|++||.++
T Consensus        56 lv~d~~~~~ilG~~ivG~~A~elI~~~~~ai~~~~t~~~l~~~   98 (123)
T d1dxla3          56 IIAEKETDKILGVHIMAPNAGELIHEAAIALQYDASSEDIARV   98 (123)
T ss_dssp             EEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTS
T ss_pred             EEEECCCCEEEEEEEehhhHHHHHHHHHHHHHcCCcHHHHhhC
Confidence            9999999999999999999999999999999999999999875

>d3lada3 d.87.1.1 (A:349-472) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.83  E-value=4.9e-21  Score=162.90  Aligned_cols=98  Identities=22%  Similarity=0.316  Sum_probs=86.8

Q ss_pred             CCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcchhhhhhccCCcccccccccCcceEEE
Q psy14461        413 YSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVK  492 (535)
Q Consensus       413 ~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~K  492 (535)
                      |..+|+++|++||+|+||+||+||++++.  ++.+...++....++. ..                      +++.||+|
T Consensus         1 Y~~vP~~vft~PeiA~VGlte~~a~~~g~--~~~~~~~~~~~~~ra~-~~----------------------~~~~G~vK   55 (124)
T d3lada3           1 YDLIPAVIYTHPEIAGVGKTEQALKAEGV--AINVGVFPFAASGRAM-AA----------------------NDTAGFVK   55 (124)
T ss_dssp             TTCCCEEECSSSEEEEEECCHHHHHHTTC--CEEEEEEEGGGCHHHH-HH----------------------TCCCCEEE
T ss_pred             CCcCCeEecCcCceeEeehhHHHHhhccc--ccEEEEEECccCcchh-hc----------------------CCCCeEEE
Confidence            56799999999999999999999999865  7888888887666553 11                      25789999


Q ss_pred             EEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461        493 LVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT  535 (535)
Q Consensus       493 li~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~  535 (535)
                      |++|++|++|||+|++|++|+|+|+.++++|++++|++||.++
T Consensus        56 lv~d~~t~~ILGa~ivg~~A~elI~~~~~ai~~~~t~~~l~~~   98 (124)
T d3lada3          56 VIADAKTDRVLGVHVIGPSAAELVQQGAIAMEFGTSAEDLGMM   98 (124)
T ss_dssp             EEEETTTCBEEEEEEEETTHHHHHHHHHHHHHHTCBHHHHHTS
T ss_pred             EEEECCCCEEEEEEEEcccHHHHHHHHHHHHHcCCCHHHHHhC
Confidence            9999999999999999999999999999999999999999875

>d1xdia2 d.87.1.1 (A:349-466) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.83  E-value=7.1e-21  Score=160.23  Aligned_cols=97  Identities=19%  Similarity=0.165  Sum_probs=85.9

Q ss_pred             CCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcchhhhhhccCCcccccccccCcceEEEE
Q psy14461        414 SFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKL  493 (535)
Q Consensus       414 ~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kl  493 (535)
                      +.+|+++|++||+|+||+||+||++.+.  ++.+...++....++. ..                      +++.||+||
T Consensus         2 r~iP~~vft~PeiA~vGlte~~a~~~g~--~~~~~~~~~~~~~ra~-~~----------------------~~~~G~vKl   56 (118)
T d1xdia2           2 RTVAATVFTRPEIAAVGVPQSVIDAGSV--AARTIMLPLRTNARAK-MS----------------------EMRHGFVKI   56 (118)
T ss_dssp             GGCEEEECSSSEEEEEESCHHHHHHTSS--CEEEEEEESTTSHHHH-HT----------------------TCSSCEEEE
T ss_pred             CCCCEEecCCChheeehhhHHHHHhCcc--cceeeeecccchhhhh-hc----------------------ccchhheEE
Confidence            3589999999999999999999998844  7888888887766654 11                      257899999


Q ss_pred             EEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461        494 VCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT  535 (535)
Q Consensus       494 i~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~  535 (535)
                      ++|++|++|||+|++|++|+|+|+.++++|++++|++||.++
T Consensus        57 v~d~~~~~ilGa~ivG~~A~elI~~~~~ai~~~~t~~~l~~~   98 (118)
T d1xdia2          57 FCRRSTGVVIGGVVVAPIASELILPIAVAVQNRITVNELAQT   98 (118)
T ss_dssp             EEETTTCBEEEEEEEETTHHHHHHHHHHHHHHTCBHHHHHTS
T ss_pred             EEecCCCceEEEEEEcCcHHHHHHHHHHHHHcCCCHHHHhhC
Confidence            999999999999999999999999999999999999999874

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.83  E-value=1.2e-19  Score=170.55  Aligned_cols=202  Identities=15%  Similarity=0.129  Sum_probs=146.5

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccc-------ccccccccccccchhhccc---cc-ccccccccC
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFR-------KKRRLYYPVAMSDLELEQD---ST-SALNVTIRN  156 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~-------~~~l~~~~~~i~~~~~~~~---~~-~~~~~~~~~  156 (535)
                      .+|++|||+||+|+.+|+.....+.+|+|||++. +++.       +......+........++.   .. ........+
T Consensus         5 ~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~~-~GG~c~~~gc~p~k~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~   83 (220)
T d1lvla1           5 QTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQA-LGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVASPRLD   83 (220)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHTCCEEEECSSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCCCCC
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC-CCCcccccccccchhhhhhHHHHhhhhhccccccceEEeccceeh
Confidence            4689999999999999999999999999999975 2211       0000000000000000000   00 112245678


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEceeEEEcceEEEeeCceecCCCCCCceechhhHHh
Q psy14461        157 WNAATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAVERRCLPEPRNSALISADDLFR  236 (535)
Q Consensus       157 ~~~l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~~~~~~d~lViATGs~p~~~i~G~~v~~~~~~~~  236 (535)
                      |.....++...+..........+...+++++.|+..+.+...+......+.+|++|||||++|.. +|.           
T Consensus        84 ~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~~~~~~~~~~~~~~~~i~a~~viiAtG~~p~~-lp~-----------  151 (220)
T d1lvla1          84 IGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLDGKQVEVDGQRIQCEHLLLATGSSSVE-LPR-----------  151 (220)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEEEEETTEEEETTEEEECSEEEECCCEEECC-BTE-----------
T ss_pred             HHHHhhhheeEEeeeccchhhhhccCceEEEEeeecccCcccccccceeEeeceeeEcCCCCccc-ccc-----------
Confidence            99999998888888877788888899999999999999999888888899999999999999964 110           


Q ss_pred             ccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEcCcCCccCcHHHHHHHHHhhhcCCeEEcceEEEEEEEeCCCcEEE
Q psy14461        237 LGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVSIQCCVIEKVISSFDGMKGV  316 (535)
Q Consensus       237 ~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~i~~~~v~~i~~~~~~~~~v  316 (535)
                                                                                            ...       
T Consensus       152 ----------------------------------------------------------------------~~~-------  154 (220)
T d1lvla1         152 ----------------------------------------------------------------------RPR-------  154 (220)
T ss_dssp             ----------------------------------------------------------------------EEC-------
T ss_pred             ----------------------------------------------------------------------ccc-------
Confidence                                                                                  000       


Q ss_pred             EEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCCCcHHHHHHHH
Q psy14461        317 RGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISA  396 (535)
Q Consensus       317 ~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~~~~~~A~~~g  396 (535)
                           ..+.                      ++...+++++ +|+|.||+++||+.|+|||+|||+ +.+.+++.|..+|
T Consensus       155 -----~~~~----------------------~~~~~~~~~~-~g~i~vd~~~~T~~~~I~A~GDv~-~~~~l~~~a~~~g  205 (220)
T d1lvla1         155 -----TKGF----------------------NLECLDLKMN-GAAIAIDERCQTSMHNVWAIGDVA-GEPMLAHRAMAQG  205 (220)
T ss_dssp             -----CSSS----------------------SGGGSCCCEE-TTEECCCTTCBCSSTTEEECGGGG-CSSCCHHHHHHHH
T ss_pred             -----ccCC----------------------cceeeehhhc-CCcccccchhhcCCCCEEEEEEeC-CcccchhhhhhhH
Confidence                 0110                      0122233344 678999999999999999999999 9999999999999


Q ss_pred             HHHHHHHhCCCC
Q psy14461        397 RLIIERLYGMQD  408 (535)
Q Consensus       397 ~~aa~~i~g~~~  408 (535)
                      ++||++|+|+..
T Consensus       206 ~~~a~~i~G~~~  217 (220)
T d1lvla1         206 EMVAEIIAGKAR  217 (220)
T ss_dssp             HHHHHHHTTCCC
T ss_pred             HHHHHHHcCCCC
Confidence            999999999654

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.83  E-value=2.4e-21  Score=177.16  Aligned_cols=155  Identities=15%  Similarity=0.155  Sum_probs=115.9

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCc-HHHHHHH----------HHhhhcCCeEE-cceEEEEEE
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFD-QEMVRIL----------LSSLTKAGVSI-QCCVIEKVI  307 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~-~~~~~~~----------~~~l~~~gV~i-~~~~v~~i~  307 (535)
                      ..+|+|||||++|+|+|..|+++|.+|+++.. ++.++.++ +.+...+          ...+...+|++ .+.+++++.
T Consensus         3 ~a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~i~   82 (183)
T d1d7ya1           3 KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKRAPEVEWLLGVTAQSFD   82 (183)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSGGGGTTHHHHCCGGGSBCCGGGSTTCEEEETCCEEEEE
T ss_pred             CCCEEEECccHHHHHHHHHHHhcCCceEEEEEecccccchhhHHHhhhhhhhhhhhhHHHHHhhcCCeEEEEeccccccc
Confidence            45799999999999999999999988888776 55443222 2121111          12234568999 999999987


Q ss_pred             EeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCc---cccCeeecCCCceEcCCCCCcCCCCEEEeCCcCC-
Q psy14461        308 SSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNL---HHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVH-  383 (535)
Q Consensus       308 ~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l---~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~-  383 (535)
                      .+   ...+++   .+|+  ++++|.+++|+|..|++..++.   ...+++.  ++.|.||+++||+.|+|||+|||++ 
T Consensus        83 ~~---~~~~~~---~~g~--~~~~D~vi~a~G~~p~~~~~~~~~~~~~gl~~--~~~I~vd~~~~ts~~~IyA~GD~a~~  152 (183)
T d1d7ya1          83 PQ---AHTVAL---SDGR--TLPYGTLVLATGAAPRAVLANDALARAAGLAC--DDGIFVDAYGRTTCPDVYALGDVTRQ  152 (183)
T ss_dssp             TT---TTEEEE---TTSC--EEECSEEEECCCEEECCEEECCHHHHHTTCCB--SSSEECCTTCBCSSTTEEECGGGEEE
T ss_pred             cc---cceeEe---cCCc--EeeeeeEEEEEEEEcccccccccccceeeEee--CCcEEeccceeccccccchhhhhhcc
Confidence            53   234555   3787  8999999999999998866532   2334543  4569999999999999999999974 


Q ss_pred             -----CC---CCcHHHHHHHHHHHHHHHhC
Q psy14461        384 -----GK---PNNASMAAISARLIIERLYG  405 (535)
Q Consensus       384 -----~~---~~~~~~A~~~g~~aa~~i~g  405 (535)
                           +.   ..++..|.+||+.||+||+.
T Consensus       153 ~~~~~g~~~~~~~~~~A~~qg~~aa~nil~  182 (183)
T d1d7ya1         153 RNPLSGRFERIETWSNAQNQGIAVARHLVD  182 (183)
T ss_dssp             ECTTTCSEEECCCHHHHHHHHHHHHHHHHC
T ss_pred             ceeeCCceechhHHHHHHHHHHHHHHHHcC
Confidence                 11   23678899999999999985

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.83  E-value=5.9e-20  Score=155.38  Aligned_cols=115  Identities=17%  Similarity=0.287  Sum_probs=104.6

Q ss_pred             CCCCCceechhhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-c
Q psy14461        222 EPRNSALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-Q  299 (535)
Q Consensus       222 ~i~G~~v~~~~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~  299 (535)
                      |+.++.++++++++.++..|++++|||||++|+|+|..|+++|++||++++ ++++|.+|+++.+.+++.|+++||++ +
T Consensus         3 p~d~~~v~~s~~~l~l~~~p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll~~~d~ei~~~l~~~l~~~Gv~i~~   82 (119)
T d3lada2           3 PVDQDVIVDSTGALDFQNVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPAVDEQVAKEAQKILTKQGLKILL   82 (119)
T ss_dssp             CCCSSSEEEHHHHTSCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEE
T ss_pred             CCCCCEEEchhHhhCcccCCCeEEEECCChHHHHHHHHHHHcCCceEEEEeecccCCcccchhHHHHHHHHHhcCceeec
Confidence            455578999999999999999999999999999999999999999999999 99999999999999999999999999 9


Q ss_pred             ceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccC
Q psy14461        300 CCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAME  339 (535)
Q Consensus       300 ~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G  339 (535)
                      ++++++++.. ++.+++++.+  .+..+++++|.|++|+|
T Consensus        83 ~~~v~~i~~~-~~~v~v~~~~--~~~~~~~~~D~vlvAvG  119 (119)
T d3lada2          83 GARVTGTEVK-NKQVTVKFVD--AEGEKSQAFDKLIVAVG  119 (119)
T ss_dssp             TCEEEEEEEC-SSCEEEEEES--SSEEEEEEESEEEECSC
T ss_pred             CcEEEEEEEe-CCEEEEEEEE--CCCCEEEECCEEEEeeC
Confidence            9999999987 5667888864  33345899999999998

>d1ojta3 d.87.1.1 (A:471-598) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.83  E-value=1.5e-20  Score=160.48  Aligned_cols=97  Identities=21%  Similarity=0.186  Sum_probs=86.6

Q ss_pred             CCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcchhhhhhccCCcccccccccCcceEEEE
Q psy14461        414 SFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKL  493 (535)
Q Consensus       414 ~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kl  493 (535)
                      +.+|+++|++||+|+||+||+||++++.  ++.+...++....++. ..                      +++.||+|+
T Consensus         2 r~IP~~vft~PeiA~VGlte~~A~~~g~--~~~v~~~~~~~~~ra~-~~----------------------~~~~g~~Kl   56 (128)
T d1ojta3           2 RVIPGVAYTSPEVAWVGETELSAKASAR--KITKANFPWAASGRAI-AN----------------------GCDKPFTKL   56 (128)
T ss_dssp             CCCCEEECSSSCEEEEECCHHHHHHHTC--CEEEEEEEGGGCHHHH-HT----------------------TCCSCEEEE
T ss_pred             CcCCEeecCCCceeeeeccHHHHHHcCC--CcccceeeccchhhHH-hc----------------------CCccceEEE
Confidence            3589999999999999999999999855  7888888887766654 22                      257899999


Q ss_pred             EEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461        494 VCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT  535 (535)
Q Consensus       494 i~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~  535 (535)
                      ++|++||+|||+|++|++|+|+|+.++++|++++|++||.++
T Consensus        57 i~d~~~g~iLGa~ivG~~A~ElI~~~~lai~~~~t~~~l~~~   98 (128)
T d1ojta3          57 IFDAETGRIIGGGIVGPNGGDMIGEVCLAIEMGCDAADIGKT   98 (128)
T ss_dssp             EEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTS
T ss_pred             EEeCCCCeEEEEEEEhhhHHHHHHHHHHHHHcCCCHHHHhhC
Confidence            999999999999999999999999999999999999999875

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.83  E-value=1.1e-19  Score=171.03  Aligned_cols=202  Identities=13%  Similarity=0.082  Sum_probs=146.8

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccccc--c-------cccc----cccccchhhccccc--cccccc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKK--R-------RLYY----PVAMSDLELEQDST--SALNVT  153 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~--~-------l~~~----~~~i~~~~~~~~~~--~~~~~~  153 (535)
                      +|++|||+||||+.+|+++.+.+.+|+|||+.........  +       .+..    ..............  ......
T Consensus         4 YDviIIGgGpAGl~aA~~aar~G~~V~viE~~~~~~~~~~~gg~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~   83 (229)
T d3lada1           4 FDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGISTGEV   83 (229)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSBCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTSGGGTEECSCC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCeEEEEecccCCCccccccccccccccchhhhhhhhhhhhhhhhhhhhhcccccCcc
Confidence            6799999999999999999999999999998753211110  0       0000    00000000000000  112345


Q ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEce-----eEEEcceEEEeeCceecC-CCCCCc
Q psy14461        154 IRNWNAATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSN-----RSVTGFNFLLAVERRCLP-EPRNSA  227 (535)
Q Consensus       154 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~-----~~~~~d~lViATGs~p~~-~i~G~~  227 (535)
                      ..+|..+..++......+...+...++..+|+++.|...+.+........     ..+.++.+++|||++|.. +.    
T Consensus        84 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~gV~vi~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atG~~~~~~~~----  159 (229)
T d3lada1          84 AIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKLLAGKKVEVTAADGSSQVLDTENVILASGSKPVEIPR----  159 (229)
T ss_dssp             EECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESEEEECSTTCEEEECTTSCEEEECCSCEEECCCEEECCCTE----
T ss_pred             eeecchhhhhhhHHHHHhhhhHHHHhhcCCeEEEEeEEcccccceeeccccCccceeeecccccccCCcccccccc----
Confidence            67899999999888888888888889999999999998887766555432     678899999999998854 10    


Q ss_pred             eechhhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEcCcCCccCcHHHHHHHHHhhhcCCeEEcceEEEEEE
Q psy14461        228 LISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVSIQCCVIEKVI  307 (535)
Q Consensus       228 v~~~~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~i~~~~v~~i~  307 (535)
                                                                                                    ..
T Consensus       160 ------------------------------------------------------------------------------~~  161 (229)
T d3lada1         160 ------------------------------------------------------------------------------RP  161 (229)
T ss_dssp             ------------------------------------------------------------------------------EE
T ss_pred             ------------------------------------------------------------------------------cc
Confidence                                                                                          00


Q ss_pred             EeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCCC
Q psy14461        308 SSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPN  387 (535)
Q Consensus       308 ~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~~  387 (535)
                                .    +..                     +.++++|+++|++|+|.||++++|++|+|||+|||+ +++.
T Consensus       162 ----------~----~~~---------------------~~~~~~gv~l~~~G~i~vd~~~~T~vpgiyA~GDv~-~g~~  205 (229)
T d3lada1         162 ----------V----TTD---------------------LLAADSGVTLDERGFIYVDDYCATSVPGVYAIGDVV-RGAM  205 (229)
T ss_dssp             ----------C----CTT---------------------CCSSCCSCCBCTTSCBCCCTTSBCSSTTEEECGGGS-SSCC
T ss_pred             ----------c----ccc---------------------cchHhcCeeecCCCcEEecccccCCCCCEEEEeCCc-chHH
Confidence                      0    000                     112556788899999999999999999999999999 8899


Q ss_pred             cHHHHHHHHHHHHHHHhCCCC
Q psy14461        388 NASMAAISARLIIERLYGMQD  408 (535)
Q Consensus       388 ~~~~A~~~g~~aa~~i~g~~~  408 (535)
                      +++.|.++|+.||++|+|++.
T Consensus       206 l~~~A~~~G~~aa~~i~g~~~  226 (229)
T d3lada1         206 LAHKASEEGVVVAERIAGHKA  226 (229)
T ss_dssp             CHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHHcCCCC
Confidence            999999999999999998654

>d1lvla3 d.87.1.1 (A:336-458) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.82  E-value=1.4e-20  Score=159.69  Aligned_cols=97  Identities=19%  Similarity=0.273  Sum_probs=86.2

Q ss_pred             CCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcchhhhhhccCCcccccccccCcceEEEE
Q psy14461        414 SFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKL  493 (535)
Q Consensus       414 ~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kl  493 (535)
                      ..+|+++|++||+|+||+||+||++++.  ++.+.+.++..+.++. ..                      +++.||+|+
T Consensus         2 ~~iP~vvft~PeiA~VGlte~eA~~~g~--~~~v~~~~~~~~~ra~-~~----------------------~~~~g~vkl   56 (123)
T d1lvla3           2 AAIAAVCFTDPEVVVVGKTPEQASQQGL--DCIVAQFPFAANGRAM-SL----------------------ESKSGFVRV   56 (123)
T ss_dssp             SCCCEEECSSSEEEEEECCHHHHHHTTC--CEEEEEEEGGGCHHHH-HT----------------------TCCCCEEEE
T ss_pred             CCCCEEEeCCCccEEEECCHHHHhhcch--hhhcceeeccccccce-ec----------------------Ccchhheee
Confidence            4589999999999999999999999854  7888888887766654 22                      257899999


Q ss_pred             EEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461        494 VCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT  535 (535)
Q Consensus       494 i~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~  535 (535)
                      ++|++|++|||+|++|++|+|+|+.++++|++++|++||.++
T Consensus        57 v~d~~t~~ILG~~ivG~~A~elI~~~~lai~~~~t~~~l~~~   98 (123)
T d1lvla3          57 VARRDNHLILGWQAVGVAVSELSTAFAQSLEMGACLEDVAGT   98 (123)
T ss_dssp             EEETTTCBEEEEEEEETTGGGHHHHHHHHHHHTCBHHHHHTS
T ss_pred             eeecccccceEEEEEeCchhhHHHHHHHHHHcCCCHHHHhcC
Confidence            999999999999999999999999999999999999999875

>d1feca3 d.87.1.1 (A:358-485) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.82  E-value=1.9e-20  Score=159.86  Aligned_cols=99  Identities=22%  Similarity=0.322  Sum_probs=86.6

Q ss_pred             CCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcchhhhhhccCCcccccccccCcceEEE
Q psy14461        413 YSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVK  492 (535)
Q Consensus       413 ~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~K  492 (535)
                      |..+|+++|++|++|+||+||+||++++.  ++++...++.++.++. ....                     .+.+++|
T Consensus         1 y~~VP~aVfT~PeiA~VGlte~eA~~~g~--~~~v~~~~~~~~~~a~-~~~~---------------------~~~~~~k   56 (128)
T d1feca3           1 HTKVACAVFSIPPMGVCGYVEEDAAKKYD--QVAVYESSFTPLMHNI-SGST---------------------YKKFMVR   56 (128)
T ss_dssp             CSSCCEEECCSSCEEEEECCHHHHHHHCS--EEEEEEEEECCHHHHH-HSCT---------------------TCCEEEE
T ss_pred             CCCCCEEecCCCcceEEECCHHHHhhhhc--CcceeecccchHHHHH-hccc---------------------cccceEE
Confidence            46799999999999999999999999965  7888888887766654 2221                     4568999


Q ss_pred             EEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461        493 LVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT  535 (535)
Q Consensus       493 li~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~  535 (535)
                      +++|++||+|||+|++|++|+|+|+.++++|++++|++||.++
T Consensus        57 lv~~~~~g~iLGa~ivG~~A~ElI~~~~~ai~~~~t~~~l~~~   99 (128)
T d1feca3          57 IVTNHADGEVLGVHMLGDSSPEIIQSVAICLKMGAKISDFYNT   99 (128)
T ss_dssp             EEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTS
T ss_pred             EeecCCCCceeEEEEECCCHHHHHHHHHHHHHcCCcHHHHhcC
Confidence            9999999999999999999999999999999999999999874

>d1ebda3 d.87.1.1 (A:347-461) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.82  E-value=1.1e-20  Score=158.41  Aligned_cols=96  Identities=28%  Similarity=0.360  Sum_probs=84.8

Q ss_pred             CCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcchhhhhhccCCcccccccccCcceEEEEE
Q psy14461        415 FLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLV  494 (535)
Q Consensus       415 ~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli  494 (535)
                      .+|+++|++||+|+||+||+||++++.  ++.+...++....++. ..                      +++.||+|++
T Consensus         1 AvP~~vft~PeiA~VGlte~ea~~~g~--~~~v~~~~~~~~~ra~-~~----------------------~~~~G~vKli   55 (115)
T d1ebda3           1 AIPAVVFSDPECASVGYFEQQAKDEGI--DVIAAKFPFAANGRAL-AL----------------------NDTDGFLKLV   55 (115)
T ss_dssp             CCCEEECSSSCEEEEECCHHHHHTTTC--CEEEEEEEGGGCHHHH-HH----------------------TCCCCEEEEE
T ss_pred             CcCeEecCCCceEEEeCCHHHHhhhhh--hhhccceecccceeee-ec----------------------CCCcEEEEEE
Confidence            379999999999999999999998843  7888888887766654 21                      2578999999


Q ss_pred             EECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461        495 CLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT  535 (535)
Q Consensus       495 ~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~  535 (535)
                      +|++|++|||+|++|++|+|+|+.++++|++++|++||.++
T Consensus        56 ~~~~~~~iLG~~ivg~~A~elI~~~~~ai~~~~t~~~l~~~   96 (115)
T d1ebda3          56 VRKEDGVIIGAQIIGPNASDMIAELGLAIEAGMTAEDIALT   96 (115)
T ss_dssp             EETTTTEEEEEEEESTTHHHHHHHHHHHHHHTCBHHHHHHS
T ss_pred             EeCCcceEEEEEEEcCCHHHHHHHHHHHHHcCCCHHHHhhC
Confidence            99999999999999999999999999999999999999764

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.82  E-value=4.9e-20  Score=156.92  Aligned_cols=117  Identities=17%  Similarity=0.194  Sum_probs=106.0

Q ss_pred             CCCC-CceechhhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-
Q psy14461        222 EPRN-SALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-  298 (535)
Q Consensus       222 ~i~G-~~v~~~~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-  298 (535)
                      .+|+ ++++++++++.+.+.|++++|||||++|+|+|..|+++|.+||++++ ++++|.+|+++.+.+++.|+++||++ 
T Consensus         6 ~ip~~~~i~ts~~~l~l~~~p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il~~~d~~~~~~l~~~l~~~gv~~~   85 (125)
T d1ojta2           6 FIPEDPRIIDSSGALALKEVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQGADRDLVKVWQKQNEYRFDNIM   85 (125)
T ss_dssp             SCCCCTTEECHHHHTTCCCCCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHGGGEEEEE
T ss_pred             CCCCCCcEEcHHHhhCccccCCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeeccccccchhhHHHHHHHHHHHcCcccc
Confidence            4666 77999999999999999999999999999999999999999999999 99999999999999999999999999 


Q ss_pred             cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCC
Q psy14461        299 QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEK  340 (535)
Q Consensus       299 ~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~  340 (535)
                      +++++++++.. ++.+.++++. .+|+.+++++|.|++|+|+
T Consensus        86 ~~~~v~~v~~~-~~g~~v~~~~-~~g~~~~i~~D~vl~A~GR  125 (125)
T d1ojta2          86 VNTKTVAVEPK-EDGVYVTFEG-ANAPKEPQRYDAVLVAAGR  125 (125)
T ss_dssp             CSCEEEEEEEE-TTEEEEEEES-SSCCSSCEEESCEEECCCE
T ss_pred             cCcEEEEEEEc-CCcEEEEEEe-CCCCeEEEEcCEEEEecCC
Confidence            99999999987 4566777764 3455558999999999996

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.81  E-value=7.1e-20  Score=164.42  Aligned_cols=148  Identities=19%  Similarity=0.173  Sum_probs=111.2

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHH-------------HHHhhhcCCeEE-cceEEEEEE
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRI-------------LLSSLTKAGVSI-QCCVIEKVI  307 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~-------------~~~~l~~~gV~i-~~~~v~~i~  307 (535)
                      ||+|||||++|+|+|..|++ +.+||++++ +.+. ..++.+.+.             ..+.+++.++++ .++.++.++
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~   79 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVPY-YSKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEAKLID   79 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSSSSCC-CCSTTHHHHHTTSSCGGGGCSSCHHHHHHHTEEEECSCCEEEEE
T ss_pred             eEEEECCcHHHHHHHHHHHc-CCCEEEEecccccc-ccccchhhhhhhhhhhhhhhHHHHHHHHhccceeeeeccccccc
Confidence            79999999999999999965 679999998 4332 111111111             133456679999 999999886


Q ss_pred             EeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCC---
Q psy14461        308 SSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHG---  384 (535)
Q Consensus       308 ~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~---  384 (535)
                      ..  . ..+..    +++  ++++|.+++|+|.+|+ .++  +..+++.+ + .|.||+++||+.|+|||+|||+..   
T Consensus        80 ~~--~-~~~~~----~~~--~i~~D~li~a~G~~~~-~~~--~~~gl~~~-~-~i~v~~~~~t~~~~i~aiGD~~~~~~~  145 (167)
T d1xhca1          80 RG--R-KVVIT----EKG--EVPYDTLVLATGAPNV-DLA--RRSGIHTG-R-GILIDDNFRTSAKDVYAIGDCAEYSGI  145 (167)
T ss_dssp             TT--T-TEEEE----SSC--EEECSEEEECCCEECC-HHH--HHTTCCBS-S-SEECCTTSBCSSTTEEECGGGEEBTTB
T ss_pred             cc--c-ccccc----ccc--ccccceeEEEEEecCC-chh--hhcCceeC-C-ceeeccccEecCCCeEEeeecccCCCe
Confidence            42  2 22332    566  7999999999999775 343  56678765 3 499999999999999999999831   


Q ss_pred             CCCcHHHHHHHHHHHHHHHhCC
Q psy14461        385 KPNNASMAAISARLIIERLYGM  406 (535)
Q Consensus       385 ~~~~~~~A~~~g~~aa~~i~g~  406 (535)
                      -+..++.|++||+++|+||+|+
T Consensus       146 ~~~~~~~a~~~a~~~a~~i~Ge  167 (167)
T d1xhca1         146 IAGTAKAAMEQARVLADILKGE  167 (167)
T ss_dssp             CCCSHHHHHHHHHHHHHHHTTC
T ss_pred             EEChHHHHHHHHHHHHHHcCCC
Confidence            1346789999999999999884

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.81  E-value=3.2e-19  Score=150.47  Aligned_cols=112  Identities=19%  Similarity=0.284  Sum_probs=102.5

Q ss_pred             CCC-CceechhhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-c
Q psy14461        223 PRN-SALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-Q  299 (535)
Q Consensus       223 i~G-~~v~~~~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~  299 (535)
                      +|+ +.++++++++.+...|++++|||||++|+|+|..|+++|.+||++++ +++++.+|+++++.+.+.|+++||++ +
T Consensus         3 ~~~~~~i~~s~~~l~~~~~p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il~~~d~~~~~~l~~~l~~~GI~i~~   82 (117)
T d1ebda2           3 FKFSNRILDSTGALNLGEVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSGFEKQMAAIIKKRLKKKGVEVVT   82 (117)
T ss_dssp             BCCCSSEECHHHHHTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCCCEEChhHhhChhhcCCeEEEECCCccceeeeeeecccccEEEEEEecceecccccchhHHHHHHHHHhcCCEEEc
Confidence            566 78999999999999999999999999999999999999999999999 99999999999999999999999999 9


Q ss_pred             ceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEc
Q psy14461        300 CCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNA  337 (535)
Q Consensus       300 ~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a  337 (535)
                      ++++++++.. ++.+.+.+..  +|+++++++|.|+++
T Consensus        83 ~~~v~~i~~~-~~~~~v~~~~--~g~~~~i~~D~Vlvs  117 (117)
T d1ebda2          83 NALAKGAEER-EDGVTVTYEA--NGETKTIDADYVLVT  117 (117)
T ss_dssp             SEEEEEEEEE-TTEEEEEEEE--TTEEEEEEESEEEEC
T ss_pred             CCEEEEEEEc-CCEEEEEEEe--CCCEEEEEeEEEEEC
Confidence            9999999987 4566777653  677678999999974

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.80  E-value=2.8e-19  Score=150.49  Aligned_cols=111  Identities=19%  Similarity=0.345  Sum_probs=101.7

Q ss_pred             CCCC-CceechhhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-
Q psy14461        222 EPRN-SALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-  298 (535)
Q Consensus       222 ~i~G-~~v~~~~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-  298 (535)
                      +||| +.++++++++.++. |++|+|||||++|+|+|..|+++|.+||++++ +++++.+|+++++.+++.|+++||++ 
T Consensus         3 ~IpG~e~~~ts~~~~~l~~-p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~gV~i~   81 (117)
T d1onfa2           3 PVKGIENTISSDEFFNIKE-SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRKFDESVINVLENDMKKNNINIV   81 (117)
T ss_dssp             SCTTGGGCEEHHHHTTCCC-CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEE
T ss_pred             ccCCHhHcCchhHHhccCC-CCEEEEECCchHHHHHHHHHHhccccceeeehhccccccccHHHHHHHHHHHHhCCCEEE
Confidence            6899 88999999999887 89999999999999999999999999999999 99999999999999999999999999 


Q ss_pred             cceEEEEEEEeCCCcEEEEEecCCCCCceEE-EcCEEEEcc
Q psy14461        299 QCCVIEKVISSFDGMKGVRGFHPESKEPFAD-VFKTVVNAM  338 (535)
Q Consensus       299 ~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~-~~D~vi~a~  338 (535)
                      +++++++++..+++.+.+++.   +|+  .+ .+|.|++|+
T Consensus        82 ~~~~v~~i~~~~~~~~~v~~~---~G~--~~~~~D~Vi~AI  117 (117)
T d1onfa2          82 TFADVVEIKKVSDKNLSIHLS---DGR--IYEHFDHVIYCV  117 (117)
T ss_dssp             CSCCEEEEEESSTTCEEEEET---TSC--EEEEESEEEECC
T ss_pred             ECCEEEEEEEcCCCeEEEEEC---CCC--EEEeCCEEEEeC
Confidence            999999998775666778884   787  55 579999985

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=5.2e-19  Score=150.89  Aligned_cols=117  Identities=22%  Similarity=0.345  Sum_probs=103.0

Q ss_pred             CCCC-CceechhhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-
Q psy14461        222 EPRN-SALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-  298 (535)
Q Consensus       222 ~i~G-~~v~~~~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-  298 (535)
                      .||| +.++|+++++.++..||+++|||||++|+|+|..|+++|.+||++++ ++++|.+|+++.+.+.+.|+++||++ 
T Consensus         2 ~IPG~e~~~ts~~~~~l~~~pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l~~~d~~~~~~~~~~l~~~Gv~i~   81 (125)
T d3grsa2           2 QIPGASLGITSDGFFQLEELPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVL   81 (125)
T ss_dssp             TSTTGGGSBCHHHHTTCCSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEE
T ss_pred             CCCCccccCCHHHHhChhhcCCEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccccccchhhHHHHHHHHHHHHCCCEEE
Confidence            3789 88899999999999999999999999999999999999999999999 99999999999999999999999999 


Q ss_pred             cceEEEEEEEeCCCcEEEEEecCCCCC----ceEEEcCEEEEccC
Q psy14461        299 QCCVIEKVISSFDGMKGVRGFHPESKE----PFADVFKTVVNAME  339 (535)
Q Consensus       299 ~~~~v~~i~~~~~~~~~v~~~~~~~G~----~~~~~~D~vi~a~G  339 (535)
                      +++++++|+.. ++.+.+.+....+|+    ...+++|.|++|+|
T Consensus        82 ~~~~v~~i~~~-~~g~~v~~~~~~~g~~~~~~~~~~~D~vl~a~G  125 (125)
T d3grsa2          82 KFSQVKEVKKT-LSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIG  125 (125)
T ss_dssp             TTEEEEEEEEE-TTEEEEEEEECCTTSCCEEEEEEEESEEEECSC
T ss_pred             eCCEEEEEEEc-CCeEEEEEEEccCCcCcCccccccCCEEEEEeC
Confidence            99999999887 455555543323443    23578999999998

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.80  E-value=1.2e-18  Score=164.73  Aligned_cols=215  Identities=13%  Similarity=0.014  Sum_probs=149.4

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccccc---ccccccc----cccchhhcc---cccccccccccCH
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKK---RRLYYPV----AMSDLELEQ---DSTSALNVTIRNW  157 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~---~l~~~~~----~i~~~~~~~---~~~~~~~~~~~~~  157 (535)
                      -+||+|||+||||+.+|+++...+.+|+|||+.+.+++...   .+|..+.    ........+   .+.........++
T Consensus         5 ~yDviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~Gi~~~~~~~~~~   84 (233)
T d1v59a1           5 SHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVNGDIKINV   84 (233)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGGGTEEECSCEEECH
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCcceEeEEeeccccccccccchhHHHhhhhHhhcCeeEeeceecch
Confidence            48999999999999999999999999999999876643211   0111100    000000111   1222233446678


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEceeEEEcceEEEeeCceecCCCCCCceechhhHHhc
Q psy14461        158 NAATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAVERRCLPEPRNSALISADDLFRL  237 (535)
Q Consensus       158 ~~l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~~~~~~d~lViATGs~p~~~i~G~~v~~~~~~~~~  237 (535)
                      .....+.......+......+.+..+|+++.|++.+.+++.+.+..          .+|..      .  ..        
T Consensus        85 ~~~~~~~~~~i~~~~~~~~~l~~~~~v~~~~G~a~f~~~~~~~v~~----------~~~~~------~--~~--------  138 (233)
T d1v59a1          85 ANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSFEDETKIRVTP----------VDGLE------G--TV--------  138 (233)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEESSSSEEEEEC----------CTTCT------T--CC--------
T ss_pred             hhhhheeeeEEEEeecceeeeeccCCeEEEEEEEEEecCCCcEEEe----------ccccc------c--ee--------
Confidence            8888888888888888888888889999999998887766543311          00000      0  00        


Q ss_pred             cCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEcCcCCccCcHHHHHHHHHhhhcCCeEEcceEEEEEEEeCCCcEEEE
Q psy14461        238 GAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVSIQCCVIEKVISSFDGMKGVR  317 (535)
Q Consensus       238 ~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~i~~~~v~~i~~~~~~~~~v~  317 (535)
                                                                                   ....+.+..       .+.
T Consensus       139 -------------------------------------------------------------~~~~~~~~~-------~i~  150 (233)
T d1v59a1         139 -------------------------------------------------------------KEDHILDVK-------NII  150 (233)
T ss_dssp             -------------------------------------------------------------SSCEEEEEE-------EEE
T ss_pred             -------------------------------------------------------------eeeeeccCC-------eEE
Confidence                                                                         000000000       011


Q ss_pred             EecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCCCcHHHHHHHHH
Q psy14461        318 GFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISAR  397 (535)
Q Consensus       318 ~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~~~~~~A~~~g~  397 (535)
                      .          ...+..+.++|++|+++.|+++..|++++++|+|.||++++|+.|+|||+||++ +++.+++.|..+|+
T Consensus       151 i----------~~~~~~~~~~G~~p~~~~l~l~~~gv~~~~~g~i~vd~~~~T~~~~v~A~GD~~-~g~~l~~~a~~~G~  219 (233)
T d1v59a1         151 V----------ATGSEVTPFVGRRPYIAGLGAEKIGLEVDKRGRLVIDDQFNSKFPHIKVVGDVT-FGPMLAHKAEEEGI  219 (233)
T ss_dssp             E----------CCCEEECCCSCEEECCTTSCTTTTTCCBCTTSCBCCCTTSBCSSTTEEECGGGS-SSCCCHHHHHHHHH
T ss_pred             E----------ecccccceecccccCCCCcCchhcCeEEcCCCcEEECCeEecCCCCEEEEcCCc-ccHHHHHHHHHHHH
Confidence            1          112245567899999998888999999999999999999999999999999999 89999999999999


Q ss_pred             HHHHHHhCCC
Q psy14461        398 LIIERLYGMQ  407 (535)
Q Consensus       398 ~aa~~i~g~~  407 (535)
                      .||++|+++.
T Consensus       220 ~aa~~i~~~~  229 (233)
T d1v59a1         220 AAVEMLKTGH  229 (233)
T ss_dssp             HHHHHHHHSC
T ss_pred             HHHHHHccCC
Confidence            9999998754

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.79  E-value=5.2e-20  Score=167.91  Aligned_cols=156  Identities=19%  Similarity=0.147  Sum_probs=113.3

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC-ccCcHH--------------HHHHHHHhhhcCCeEE-cceEE
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL-KHFDQE--------------MVRILLSSLTKAGVSI-QCCVI  303 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l-~~~~~~--------------~~~~~~~~l~~~gV~i-~~~~v  303 (535)
                      .++|+|||||++|+|+|..|+++|.+|+++.. +... +.....              ............++.+ .+..+
T Consensus         3 ~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (185)
T d1q1ra1           3 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGTQV   82 (185)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECSCCE
T ss_pred             CCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCccccchhhhHHHHHHHHhhhhhhhhhhhhhhhhcccceeeecccee
Confidence            57999999999999999999999999998876 4332 111111              1111122334556777 77777


Q ss_pred             EEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCc-cccCeeecCCCceEcCCCCCcCCCCEEEeCCcC
Q psy14461        304 EKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNL-HHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIV  382 (535)
Q Consensus       304 ~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l-~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~  382 (535)
                      ..++..   ...+..   .++.  ++++|.+++++|.+|+++.+.+ +..++..  +|.+.||+++||+.|+|||+|||+
T Consensus        83 ~~~~~~---~~~v~~---~~~~--~i~~d~~i~~~G~~~~~~~~~~~~~~~~~~--~~~i~Vd~~~~ts~~~vya~GD~~  152 (185)
T d1q1ra1          83 TAINRD---RQQVIL---SDGR--ALDYDRLVLATGGRPLIPNCELASAAGLQV--DNGIVINEHMQTSDPLIMAVGDCA  152 (185)
T ss_dssp             EEEETT---TTEEEE---TTSC--EEECSEEEECCCEEEEEECCHHHHHTTCCB--SSSEECCTTSBCSSTTEEECGGGE
T ss_pred             eeeccc---ccEEEe---ecee--EEEeeeeeeeeecccCCCCchhHHhCCccc--cCccccCCccccchhhhhcchhhh
Confidence            777642   334555   2565  8999999999999887655432 3445543  567999999999999999999997


Q ss_pred             CC---------CCCcHHHHHHHHHHHHHHHhCC
Q psy14461        383 HG---------KPNNASMAAISARLIIERLYGM  406 (535)
Q Consensus       383 ~~---------~~~~~~~A~~~g~~aa~~i~g~  406 (535)
                      ..         ...+++.|.+||+.||+||+|+
T Consensus       153 ~~~~~~~~~~~~~~~a~~A~~~g~~aa~~i~G~  185 (185)
T d1q1ra1         153 RFHSQLYDRWVRIESVPNALEQARKIAAILCGK  185 (185)
T ss_dssp             EEEETTTTEEEECCSHHHHHHHHHHHHHHHTTC
T ss_pred             ccccccCCcccchhhHHHHHHHHHHHHHHccCC
Confidence            41         1347889999999999999984

>d1mo9a3 d.87.1.1 (A:384-523) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.79  E-value=3.1e-19  Score=155.10  Aligned_cols=111  Identities=23%  Similarity=0.217  Sum_probs=84.4

Q ss_pred             CCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcchhhhhhccCCccc--ccccccCcceEE
Q psy14461        414 SFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVCLKGGERV--LGIHVIGQNNFV  491 (535)
Q Consensus       414 ~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~  491 (535)
                      ..+|+++||+||+|+||+||+||++++.  ++.+...++............         .+|...  .+...+++.||+
T Consensus         2 ~~iP~vvfT~PeiA~VGlTe~eA~~~g~--~~~v~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~G~v   70 (140)
T d1mo9a3           2 KNYPDFLHTHYEVSFLGMGEEEARAAGH--EIVTIKMPPDTENGLNVALPA---------SDRTMLYAFGKGTAHMSGFQ   70 (140)
T ss_dssp             CSCCEEEESSSEEEEEECCHHHHHHTTC--CEEEEEESCCSTTTTCSSCSC---------CTTTHHHHHSTTTGGGGCEE
T ss_pred             CCCCcEeccCCccEEEECCHHHHHHcCC--CeEEEEEeecccccceeeeee---------ccchhhhhhhhhcCCCCceE
Confidence            4689999999999999999999999965  788777655432221100000         001000  011234789999


Q ss_pred             EEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461        492 KLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT  535 (535)
Q Consensus       492 Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~  535 (535)
                      |+++|++|++|||+|++|++|.|+|+.++++|++++|++||++|
T Consensus        71 Klv~d~~t~~IlGa~ivG~~A~ElI~~~~~ai~~~~t~~dl~~~  114 (140)
T d1mo9a3          71 KIVIDAKTRKVLGAHHVGYGAKDAFQYLNVLIKQGLTVDELGDM  114 (140)
T ss_dssp             EEEEETTTCBEEEEEEEESSCHHHHHHHHHHHHTTCBHHHHHTS
T ss_pred             EEEEecCCCcEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHHhc
Confidence            99999999999999999999999999999999999999999864

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.79  E-value=4.1e-19  Score=149.84  Aligned_cols=110  Identities=27%  Similarity=0.429  Sum_probs=99.6

Q ss_pred             CceechhhHHhccCCCCcEEEECCChHHHHHHHHHHhC---CCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cc
Q psy14461        226 SALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFL---GVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QC  300 (535)
Q Consensus       226 ~~v~~~~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~---g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~  300 (535)
                      +.++|+++++.+++.|++++|||||++|+|+|..|+++   |.+|+++++ ++++|.+|+++++.+++.|+++||++ ++
T Consensus         3 e~~~ts~~~~~l~~~p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~GI~v~~~   82 (117)
T d1feca2           3 DLCITSNEAFYLDEAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRANGINVRTH   82 (117)
T ss_dssp             GGCBCHHHHTTCSSCCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEET
T ss_pred             EEEEchHHhhCccccCCeEEEECCChHHHHHHHHhHhhcccccccceecccccccccccchhhHHHHHHHhhCcEEEEcC
Confidence            45789999999999999999999999999999887664   889999999 99999999999999999999999999 99


Q ss_pred             eEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCC
Q psy14461        301 CVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEK  340 (535)
Q Consensus       301 ~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~  340 (535)
                      +.+++|+..+++...+.+   .+|+  ++++|.|++|+|+
T Consensus        83 ~~v~~i~~~~~g~~~v~~---~~g~--~i~~D~Vi~a~GR  117 (117)
T d1feca2          83 ENPAKVTKNADGTRHVVF---ESGA--EADYDVVMLAIGR  117 (117)
T ss_dssp             CCEEEEEECTTSCEEEEE---TTSC--EEEESEEEECSCE
T ss_pred             CEEEEEEECCCCEEEEEE---CCCC--EEEcCEEEEecCC
Confidence            999999876456666777   4787  8999999999996

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.79  E-value=5.6e-19  Score=148.88  Aligned_cols=111  Identities=32%  Similarity=0.377  Sum_probs=101.1

Q ss_pred             CCC-CceechhhHHhccCCCCcEEEECCChHHHHHHHHHHhCC---CcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeE
Q psy14461        223 PRN-SALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLG---VPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVS  297 (535)
Q Consensus       223 i~G-~~v~~~~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g---~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~  297 (535)
                      ||| ++++|+++++.+++.|++++|||||++|+|+|..|.+++   .+||++++ ++++|.+|+++++.+++.|+++||+
T Consensus         1 iPG~~~~~t~~~~~~l~~~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL~~~d~~~~~~l~~~l~~~GV~   80 (117)
T d1aoga2           1 IPGIEHCISSNEAFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRGFDHTLREELTKQLTANGIQ   80 (117)
T ss_dssp             CTTGGGCBCHHHHTTCSSCCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCE
T ss_pred             CcCccceEcHHHHhCchhcCCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhhcccchHHHHHHHHHHHhcCcE
Confidence            688 889999999999999999999999999999998887765   57999999 9999999999999999999999999


Q ss_pred             E-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEcc
Q psy14461        298 I-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAM  338 (535)
Q Consensus       298 i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~  338 (535)
                      + +++++++++...++.+.+++   ++|+  +++||.|++|+
T Consensus        81 v~~~~~v~~ie~~~~~~~~v~~---~~G~--~i~~D~Vi~AI  117 (117)
T d1aoga2          81 ILTKENPAKVELNADGSKSVTF---ESGK--KMDFDLVMMAI  117 (117)
T ss_dssp             EEESCCEEEEEECTTSCEEEEE---TTSC--EEEESEEEECS
T ss_pred             EEcCCEEEEEEEcCCCeEEEEE---CCCc--EEEeCEEEEeC
Confidence            9 99999999876566677888   4787  89999999985

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.79  E-value=6.9e-19  Score=149.29  Aligned_cols=116  Identities=34%  Similarity=0.437  Sum_probs=100.0

Q ss_pred             CC--CceechhhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEcCcCCccCcHHHHHHHHHhhhcCCeEE-cc
Q psy14461        224 RN--SALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVSI-QC  300 (535)
Q Consensus       224 ~G--~~v~~~~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~i-~~  300 (535)
                      ||  ++.+|+++++.+...|++++|||||++|+|+|..|+++|++||+++++++++.+|+++++.+.+.|+++||++ ++
T Consensus         1 Pg~~e~~~tsd~~~~l~~~P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~~~l~~~D~~~~~~l~~~l~~~Gv~i~~~   80 (122)
T d1h6va2           1 PGDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQ   80 (122)
T ss_dssp             TTHHHHCBCHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSTTSCHHHHHHHHHHHHHTTEEEEES
T ss_pred             CCccceeEcchHHhCcccCCCeEEEECCCccHHHHHHHHhhcCCeEEEEEechhhccCCHHHHHHHHHHHHHCCCEEEEC
Confidence            45  4678999999999999999999999999999999999999999998877899999999999999999999999 99


Q ss_pred             eEEEEEEEeC---CCcEEEEEecCCCCCceEEEcCEEEEccC
Q psy14461        301 CVIEKVISSF---DGMKGVRGFHPESKEPFADVFKTVVNAME  339 (535)
Q Consensus       301 ~~v~~i~~~~---~~~~~v~~~~~~~G~~~~~~~D~vi~a~G  339 (535)
                      +.+++++..+   ++.+.+++....+++...+++|.|++|+|
T Consensus        81 ~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~vl~AiG  122 (122)
T d1h6va2          81 FVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVG  122 (122)
T ss_dssp             CEEEEEEEEECSTTCEEEEEEECTTSCEEEEEEESEEECCCC
T ss_pred             CEEEEEEEecCCCccEEEEEEEECCCCcEEEEECCEEEEEeC
Confidence            9999997642   23456666543344445678999999998

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.79  E-value=3.2e-19  Score=151.67  Aligned_cols=111  Identities=19%  Similarity=0.219  Sum_probs=101.4

Q ss_pred             CceechhhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEE
Q psy14461        226 SALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVI  303 (535)
Q Consensus       226 ~~v~~~~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v  303 (535)
                      .+++++++++.+++.|++++|||||++|+|+|..|+++|.+||++++ +++++.+++++.+.+.+.|+++||++ +++++
T Consensus        10 ~~v~ts~~~l~l~~~p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l~~~d~~~~~~l~~~l~~~GI~i~~~~~v   89 (123)
T d1dxla2          10 KKIVSSTGALALSEIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPTMDAEIRKQFQRSLEKQGMKFKLKTKV   89 (123)
T ss_dssp             SSEECHHHHTTCSSCCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHSSCCEECSEEE
T ss_pred             CeEEeHHHhhCccccCCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccCchhhhcchhhhhhhhhcccceEEcCCce
Confidence            67999999999999999999999999999999999999999999999 99999999999999999999999999 99999


Q ss_pred             EEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEc
Q psy14461        304 EKVISSFDGMKGVRGFHPESKEPFADVFKTVVNA  337 (535)
Q Consensus       304 ~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a  337 (535)
                      ++++.. ++.+++++...++|+++++++|.|++|
T Consensus        90 ~~i~~~-~~~~~v~~~~~~~g~~~~i~~D~vLvA  122 (123)
T d1dxla2          90 VGVDTS-GDGVKLTVEPSAGGEQTIIEADVVLVS  122 (123)
T ss_dssp             EEEECS-SSSEEEEEEESSSCCCEEEEESEEECC
T ss_pred             EEEEEc-cCeEEEEEEECCCCeEEEEEcCEEEEc
Confidence            999976 455666665445777778999999987

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.79  E-value=1.1e-18  Score=147.96  Aligned_cols=113  Identities=16%  Similarity=0.206  Sum_probs=100.2

Q ss_pred             CCceechhhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceE
Q psy14461        225 NSALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCV  302 (535)
Q Consensus       225 G~~v~~~~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~  302 (535)
                      +++++++++++.+...|++++|||||++|+|+|..|+++|.+||++++ ++++|.+|+++.+.+++.|+++||++ ++++
T Consensus         7 ~~~v~ts~~~~~l~~~p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l~~~d~ei~~~l~~~l~~~GV~i~~~~~   86 (122)
T d1v59a2           7 EEKIVSSTGALSLKEIPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGASMDGEVAKATQKFLKKQGLDFKLSTK   86 (122)
T ss_dssp             SSSEECHHHHTTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSSSCHHHHHHHHHHHHHTTCEEECSEE
T ss_pred             CCEEEehHHhhCcccCCCeEEEECCCchHHHHHHHHHhhCcceeEEEeccccchhhhhhhHHHHHHHHHhccceEEeCCE
Confidence            467899999999999999999999999999999999999999999999 99999999999999999999999999 9999


Q ss_pred             EEEEEEeCCCc-EEEEEecCCCCCceEEEcCEEEEc
Q psy14461        303 IEKVISSFDGM-KGVRGFHPESKEPFADVFKTVVNA  337 (535)
Q Consensus       303 v~~i~~~~~~~-~~v~~~~~~~G~~~~~~~D~vi~a  337 (535)
                      +++++..+++. +.+++.+...++.+++++|.|++|
T Consensus        87 v~~v~~~~~~~~v~~~~~~~~~~~~~~ie~D~vlvA  122 (122)
T d1v59a2          87 VISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVA  122 (122)
T ss_dssp             EEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred             EEEEEEeCCCcEEEEEEEeCCCCCeEEEEeCEEEEC
Confidence            99998874332 345555434556678999999986

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.1e-19  Score=170.08  Aligned_cols=156  Identities=18%  Similarity=0.176  Sum_probs=117.2

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCC--cEEEEEc-CcCCccCcHHH-----------------------------------
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGV--PVTLVYS-RRLLKHFDQEM-----------------------------------  283 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~--~Vtlv~~-~~~l~~~~~~~-----------------------------------  283 (535)
                      .+++|||||++|+++|..|++++.  +|+++.+ +.+ |...+.+                                   
T Consensus         5 ~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~-py~r~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (213)
T d1m6ia1           5 VPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPEL-PYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPSF   83 (213)
T ss_dssp             EEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSC-CBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSCGGG
T ss_pred             CCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCC-CccccccceecccccCchhhhhhhhhhcccchhhhhcCChhh
Confidence            358999999999999999998874  6999987 332 2110000                                   


Q ss_pred             --HHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeec-CC
Q psy14461        284 --VRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIK-KK  359 (535)
Q Consensus       284 --~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~-~~  359 (535)
                        .......+++.||++ ++++|++|+.+ +  .+|++   ++|+  ++++|.+|+|+|..|+...+ ....+++++ ..
T Consensus        84 ~~~~~~~~~~~~~gI~~~~g~~V~~id~~-~--~~V~l---~dG~--~i~~d~lViAtG~~~~~~~l-~~~~gl~~~~~~  154 (213)
T d1m6ia1          84 YVSAQDLPHIENGGVAVLTGKKVVQLDVR-D--NMVKL---NDGS--QITYEKCLIATGGTEPNVEL-AKTGGLEIDSDF  154 (213)
T ss_dssp             SBCTTTTTTSTTCEEEEEETCCEEEEEGG-G--TEEEE---TTSC--EEEEEEEEECCCEEEECCTT-HHHHTCCBCTTT
T ss_pred             hhhhhhHHHHHHCCeEEEeCCEEEEeecc-C--ceeee---ccce--eeccceEEEeeeeecchhhh-hhccchhhhhhh
Confidence              011122356789999 99999999864 2  25677   4888  89999999999987665444 255677764 35


Q ss_pred             CceEcCCCCCcCCCCEEEeCCcCC--------CCCCcHHHHHHHHHHHHHHHhCCCC
Q psy14461        360 SYVVCNEKDQTSVGNIFAVGGIVH--------GKPNNASMAAISARLIIERLYGMQD  408 (535)
Q Consensus       360 G~i~vd~~~~T~~~~IyA~GD~~~--------~~~~~~~~A~~~g~~aa~~i~g~~~  408 (535)
                      |.|.||++|||+ |+|||+|||+.        ..+.++..|+.||+.||+||+|...
T Consensus       155 ~~i~vd~~l~~~-~~VyA~GD~a~~~~~~~g~~~i~~~~~A~~~gr~aa~ni~g~~~  210 (213)
T d1m6ia1         155 GGFRVNAELQAR-SNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAAK  210 (213)
T ss_dssp             CSEECCTTCEEE-TTEEECGGGEEEEETTTEEECCCCHHHHHHHHHHHHHHHTSCCC
T ss_pred             hhhhhhHhcCcC-CceEEeeeeeeeccccCCcEEeeEhHHHHHHHHHHHHHhcCCCC
Confidence            789999999998 99999999974        1245678999999999999999654

>d1h6va3 d.87.1.1 (A:367-499) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.77  E-value=4.4e-19  Score=152.39  Aligned_cols=101  Identities=34%  Similarity=0.607  Sum_probs=81.5

Q ss_pred             CCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcchhhhhhccCCcccccccccCcceEEE
Q psy14461        413 YSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVK  492 (535)
Q Consensus       413 ~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~K  492 (535)
                      |..+|+++|++||+|+||+||+||+++++...+.++...+.++.+.. ....                     ...++.+
T Consensus         1 Y~~VP~~vfT~PeiA~VGlte~eA~~~g~~~~v~v~~~~~~~~~~~~-~~~~---------------------~~~~~~~   58 (133)
T d1h6va3           1 YDNVPTTVFTPLEYGCCGLSEEKAVEKFGEENIEVYHSFFWPLEWTV-PSRD---------------------NNKCYAK   58 (133)
T ss_dssp             CSSCCEEECSSSCEEEEECCHHHHHHHHCGGGEEEEEEEECCHHHHT-TTCC---------------------TTCEEEE
T ss_pred             CCCCCEEecCcchheeEeCCHHHHHHhccccccchheeccchhhhhh-hhhc---------------------ccccceE
Confidence            56799999999999999999999999876556776666666555543 2211                     3456655


Q ss_pred             EEEE-CCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461        493 LVCL-KGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT  535 (535)
Q Consensus       493 li~~-~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~  535 (535)
                      ++++ +++++|||+|++|++|+|+|+.++++|++++|++||+++
T Consensus        59 ~v~~~~~~~~ILGa~ivg~~A~ElI~~~~~ai~~~~t~~~l~~~  102 (133)
T d1h6va3          59 VICNLKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKQQLDST  102 (133)
T ss_dssp             EEEEGGGTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHS
T ss_pred             EEEEecCcccEEEEEEeCCCHHHHHHHHHHHHHcCCCHHHHhhc
Confidence            5555 579999999999999999999999999999999999864

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.77  E-value=1.7e-18  Score=163.79  Aligned_cols=160  Identities=20%  Similarity=0.199  Sum_probs=109.8

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCc------------------------------------cCc-----
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLK------------------------------------HFD-----  280 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~------------------------------------~~~-----  280 (535)
                      .|+|||+|+.|+.+|..++++|.+|+|+++ +.+-.                                    .+.     
T Consensus         8 DviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~~GG~~~~~g~~~~~~~~~~a~~~~~~~~~~~~G~~~~~~~~~~~~~~   87 (229)
T d1ojta1           8 DVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVRHLAANGIKYPEPELDIDMLR   87 (229)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCCHHHHH
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeccCCCCCeeeccccchhhhhhhhhhhHHhhhhHhhcCCcccCCcccHHHHH
Confidence            589999999999999999999999999998 54311                                    000     


Q ss_pred             -------HHHHHHHHHhhhcCCeEE-cceEEEEE--------EEeCCCcEEEEEecCCCCCceEEEcCEEEEccC-CCCC
Q psy14461        281 -------QEMVRILLSSLTKAGVSI-QCCVIEKV--------ISSFDGMKGVRGFHPESKEPFADVFKTVVNAME-KKFD  343 (535)
Q Consensus       281 -------~~~~~~~~~~l~~~gV~i-~~~~v~~i--------~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G-~~p~  343 (535)
                             ..+...+......+++++ .+.....-        ........ ...    ........+|-++++.| +.|+
T Consensus        88 ~~~~~~~~~l~~~~~~~~~~~~v~vi~g~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~l~~~~~~~~  162 (229)
T d1ojta1          88 AYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQFLDPHHLEVSLTAGDAYEQ-AAP----TGEKKIVAFKNCIIAAGSRAPN  162 (229)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTEEEEEEEEEEETTE-EEE----EEEEEEEEEEEEEECCCEEEEC
T ss_pred             HHHHHHHHHHhcchHhHhhcCceEEEEeeeeecCCccccccccccccccc-ccc----cccccceecceEEEEecccCCc
Confidence                   011112223344556665 33221110        00000000 000    11122455555555554 5677


Q ss_pred             CCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCCCcHHHHHHHHHHHHHHHhCCCC
Q psy14461        344 FAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQD  408 (535)
Q Consensus       344 ~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g~~~  408 (535)
                      +..+.++..|+++|++|+|.||+++|||+|||||+|||+ ++|.++++|+.||++||.||+|++.
T Consensus       163 ~~~~~~e~~g~~~d~~G~I~vd~~~~TsvpgVyAaGDv~-~~~~l~~~A~~eG~~Aa~~i~G~~~  226 (229)
T d1ojta1         163 GKLISAEKAGVAVTDRGFIEVDKQMRTNVPHIYAIGDIV-GQPMLAHKAVHEGHVAAENCAGHKA  226 (229)
T ss_dssp             GGGTTGGGTTCCCCTTSCCCCCTTSBCSSTTEEECGGGT-CSSCCHHHHHHHHHHHHHHHTTCCC
T ss_pred             ccccchhhhCccCCCCCCEEcCCCccCCCCCEEEEEecC-CCcchHHHHHHHHHHHHHHHcCCCC
Confidence            777667899999999999999999999999999999999 8999999999999999999999653

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.75  E-value=1.8e-18  Score=145.24  Aligned_cols=110  Identities=22%  Similarity=0.316  Sum_probs=96.8

Q ss_pred             CC-CceechhhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cc
Q psy14461        224 RN-SALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QC  300 (535)
Q Consensus       224 ~G-~~v~~~~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~  300 (535)
                      |. .+++++++++.+...|++++|||||++|+|+|..|+++|++||++++ ++++|.+++++.+.+++.|+++||++ ++
T Consensus         3 p~g~~~~~s~~~l~~~~~p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il~~~d~~~~~~l~~~l~~~gV~i~~~   82 (115)
T d1lvla2           3 PLGGPVISSTEALAPKALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPTYDSELTAPVAESLKKLGIALHLG   82 (115)
T ss_dssp             CCBTTEECHHHHTCCSSCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEETT
T ss_pred             CCCCcEECChHHhCcccCCCeEEEECCCHHHHHHHHHHhhcccceEEEeeeccccccccchhHHHHHHHHHhhcceEEcC
Confidence            44 67899999999999999999999999999999999999999999999 99999999999999999999999999 99


Q ss_pred             eEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccC
Q psy14461        301 CVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAME  339 (535)
Q Consensus       301 ~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G  339 (535)
                      ++|++++   ++.. +...  .+|.++++++|.|++|+|
T Consensus        83 ~~V~~i~---~~~~-~~~~--~~~~~~~i~~D~vi~A~G  115 (115)
T d1lvla2          83 HSVEGYE---NGCL-LAND--GKGGQLRLEADRVLVAVG  115 (115)
T ss_dssp             CEEEEEE---TTEE-EEEC--SSSCCCEECCSCEEECCC
T ss_pred             cEEEEEc---CCeE-EEEE--cCCCeEEEEcCEEEEecC
Confidence            9999986   3333 3332  244445899999999998

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.75  E-value=8.8e-18  Score=159.02  Aligned_cols=205  Identities=15%  Similarity=0.159  Sum_probs=133.9

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCC-CeEEEEecCCcc--------ccc-------ccccccccccccchhhcccccc---
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQ-RRDELQERGSHL--------SFR-------KKRRLYYPVAMSDLELEQDSTS---  148 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~-~~V~lie~~~~~--------~~~-------~~~l~~~~~~i~~~~~~~~~~~---  148 (535)
                      .+|++|||+||||+.+|+++...+ .+|+|+|+....        ++.       +...................+.   
T Consensus         3 ~YDviIIG~GpaGl~aA~~aa~~g~k~V~iie~~~~~~~~~~~~lGG~c~n~g~ip~k~l~~~a~~~~~~~~~~~~G~~~   82 (238)
T d1aoga1           3 IFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQMVHGPPFFSALGGTCVNVGCVPKKLMVTGAQYMEHLRESAGFGWEF   82 (238)
T ss_dssp             SBSEEEECCSHHHHHHHHHHHHTSCCCEEEEESCSSSBTTTBCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEEC
T ss_pred             ccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEeecccCccccccccccccccccccchhhhhhHHHHHHHHHHHhcCCcc
Confidence            478999999999999999987755 578999986421        111       0000000000000001111111   


Q ss_pred             cccccccCHHHHHHHHHHHHHHHHHHHHHHH-HhcCcEEEEeEEEEecCCEEEEce---------eEEEcceEEEeeCce
Q psy14461        149 ALNVTIRNWNAATKLIKRFCIRAKNDSMREL-KALGIDIVRTAAAFTNPHTIKLSN---------RSVTGFNFLLAVERR  218 (535)
Q Consensus       149 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~gV~~~~g~~~~~~~~~v~~~~---------~~~~~d~lViATGs~  218 (535)
                      .......+|..+..++...+..........+ ...+|+++.|.+.+...+.+....         ..++++.+++++|.+
T Consensus        83 ~~~~~~~d~~~l~~~k~~~v~~~~~~~~~~l~~~~gV~vi~g~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~v~i~~~~~  162 (238)
T d1aoga1          83 DRTTLRAEWKNLIAVKDEAVLNINKSYDEMFRDTEGLEFFLGWGSLESKNVVNVRESADPASAVKERLETEHILLASGSW  162 (238)
T ss_dssp             CGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEEESEEEEEETTEEEEESSSSTTSCEEEEEEBSCEEECCCEE
T ss_pred             cCccccccHHHHHHHHHHhhhccccceeeeeecccccEEEEEEeeccccccccccccccccccccccccccceeeecccc
Confidence            1123456899999999988888777666666 467899998887665544433211         122333333333322


Q ss_pred             ecCCCCCCceechhhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEcCcCCccCcHHHHHHHHHhhhcCCeEE
Q psy14461        219 CLPEPRNSALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVSI  298 (535)
Q Consensus       219 p~~~i~G~~v~~~~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~i  298 (535)
                      |                                                                               
T Consensus       163 ~-------------------------------------------------------------------------------  163 (238)
T d1aoga1         163 P-------------------------------------------------------------------------------  163 (238)
T ss_dssp             E-------------------------------------------------------------------------------
T ss_pred             c-------------------------------------------------------------------------------
Confidence            2                                                                               


Q ss_pred             cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEe
Q psy14461        299 QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAV  378 (535)
Q Consensus       299 ~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~  378 (535)
                                                          ....|..|++..+.+...++.++ +|+|.||++|||+.|+|||+
T Consensus       164 ------------------------------------~~~~~~~~~~~~l~~~~~gv~~~-~G~I~vde~~~T~~~~iyAv  206 (238)
T d1aoga1         164 ------------------------------------HMPNGRSPRTKDLQLQNAGVMIK-NGGVQVDEYSRTNVSNIYAI  206 (238)
T ss_dssp             ------------------------------------CCCCCEEECCGGGCGGGTTCCEE-TTEECCCTTCBCSSTTEEEC
T ss_pred             ------------------------------------ccccccccceeeecccccEEEEc-CCeEEecCCeeeccCCEEEE
Confidence                                                22334455555555566678776 79999999999999999999


Q ss_pred             CCcCCCCCCcHHHHHHHHHHHHHHHhCCCCC
Q psy14461        379 GGIVHGKPNNASMAAISARLIIERLYGMQDQ  409 (535)
Q Consensus       379 GD~~~~~~~~~~~A~~~g~~aa~~i~g~~~~  409 (535)
                      |||+ +.+.+.+.|..||++||++|+|+.++
T Consensus       207 GDv~-~~~~l~~~A~~eg~~aa~~i~g~~~~  236 (238)
T d1aoga1         207 GDVT-NRVMLTPVAINEAAALVDTVFGTTPR  236 (238)
T ss_dssp             GGGG-TSCCCHHHHHHHHHHHHHHHHSSSCC
T ss_pred             EEec-CCccchhhHHHHHHHHHHHHcCCCCC
Confidence            9999 89999999999999999999997653

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=5.5e-17  Score=151.71  Aligned_cols=201  Identities=17%  Similarity=0.192  Sum_probs=150.7

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccc---cccccc----cccccchhhcc-ccc-ccccccccCHH
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRK---KRRLYY----PVAMSDLELEQ-DST-SALNVTIRNWN  158 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~---~~l~~~----~~~i~~~~~~~-~~~-~~~~~~~~~~~  158 (535)
                      -+||+|||+||+|+.+|+++...+.+|+|||++. +++..   ...|..    +..+....... +.. .......++|.
T Consensus         2 ~yDvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~~-~GGtc~~~gc~p~k~l~~~a~~~~~~~~~~~~~g~~~~~~~~~~~   80 (217)
T d1gesa1           2 HYDYIAIGGGSGGIASINRAAMYGQKCALIEAKE-LGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKFNWE   80 (217)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEEECHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEeccC-cCCeEecccccccccchhhHHHHHHHHhhhhhcCccCCcccccHH
Confidence            3789999999999999999999999999999975 33210   001110    00000000000 000 01124567999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEceeEEEcceEEEeeCceecC-CCCCCceechhhHHhc
Q psy14461        159 AATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAVERRCLP-EPRNSALISADDLFRL  237 (535)
Q Consensus       159 ~l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~~~~~~d~lViATGs~p~~-~i~G~~v~~~~~~~~~  237 (535)
                      ++..+++..+..+...++..+++.||+++.+...+.....+..++..+.+++++||||++|.. ++|+            
T Consensus        81 ~~~~~~~~~v~~~~~~~~~~l~~~gV~v~~~~~~~~~~~~~~~~~~~~~~~~~iiatG~~p~ip~ip~------------  148 (217)
T d1gesa1          81 TLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDAKTLEVNGETITADHILIATGGRPSHPREPA------------  148 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEETTEEEETTEEEEEEEEEECCCEEECCCEEES------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCeEEEEeeecccceeeeecCCCceeeeeeeeeecCccccCCCCCC------------
Confidence            999999999999988888999999999999888777778888888899999999999998854 2221            


Q ss_pred             cCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEcCcCCccCcHHHHHHHHHhhhcCCeEEcceEEEEEEEeCCCcEEEE
Q psy14461        238 GAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVSIQCCVIEKVISSFDGMKGVR  317 (535)
Q Consensus       238 ~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~i~~~~v~~i~~~~~~~~~v~  317 (535)
                                                                                                      
T Consensus       149 --------------------------------------------------------------------------------  148 (217)
T d1gesa1         149 --------------------------------------------------------------------------------  148 (217)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCCCcHHHHHHHHH
Q psy14461        318 GFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISAR  397 (535)
Q Consensus       318 ~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~~~~~~A~~~g~  397 (535)
                                                ++.++++..++.++++|++.+|++++|+.|+||++||+. .+..+++.+.++|+
T Consensus       149 --------------------------~~~l~l~~~gv~~~~~~~i~~d~~~~t~~~~i~~iG~g~-~g~ela~~~~~~G~  201 (217)
T d1gesa1         149 --------------------------NDNINLEAAGVKTNEKGYIVVDKYQNTNIEGIYAVGDNT-GAVELTPVAVAAGR  201 (217)
T ss_dssp             --------------------------CTTSCHHHHTCCBCTTSCBCCCTTSBCSSTTEEECSGGG-TSCCCHHHHHHHHH
T ss_pred             --------------------------cCCcccccccEEEcCCccEeeCchhccCCCcEEEECCCc-cHHHHHHHHHHHHH
Confidence                                      112223444566778899999999999999999999999 88899999999999


Q ss_pred             HHHHHHhCCCC
Q psy14461        398 LIIERLYGMQD  408 (535)
Q Consensus       398 ~aa~~i~g~~~  408 (535)
                      .++.++++..+
T Consensus       202 ~v~~~~~~~~p  212 (217)
T d1gesa1         202 RLSERLFNNKP  212 (217)
T ss_dssp             HHHHHHHTTCT
T ss_pred             HHHHHHhCCCC
Confidence            99999998653

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.72  E-value=8.8e-21  Score=183.27  Aligned_cols=164  Identities=15%  Similarity=0.132  Sum_probs=112.0

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccc-------ccccccccccccchhhcccccccccccccCHHHH
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFR-------KKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAA  160 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~-------~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l  160 (535)
                      ++|++|||+||+|+.+|+++...+.+|+|+|++. +++.       |...+.....+.........+..-....++|..+
T Consensus         1 vyDviVIG~G~aG~~aA~~aa~~G~~V~liE~~~-~GGtc~n~gciPsK~l~~~~~~~~~~~~~~~~G~~~~~~~~~~~~   79 (259)
T d1onfa1           1 VYDLIVIGGGSGGMAAARRAARHNAKVALVEKSR-LGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDTKFSFNLPLL   79 (259)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS-TTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCHHHH
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCeEEEEecCC-CCCeEEeeCCcchHHHHhhhhcccchhccccccccchhhhhhhhH
Confidence            3689999999999999999999999999999975 3321       1111111000111111112222222457899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEce--------------eEEEcceEEEeeCceecC---CC
Q psy14461        161 TKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSN--------------RSVTGFNFLLAVERRCLP---EP  223 (535)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~--------------~~~~~d~lViATGs~p~~---~i  223 (535)
                      .+++...+..+...+...++..||+++.|++.|.+.+++.+..              +.+++|++|||||++|..   .+
T Consensus        80 ~~~~~~~i~~~~~~~~~~l~~~gV~vi~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~i~a~~iiIATGs~P~~~~~~~  159 (259)
T d1onfa1          80 VERRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVGRSPDT  159 (259)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCEEEESCCCCC--------------------------CBSSEEECCCCCBCCBCCTT
T ss_pred             HhhhheeeeccccchhhhcccccceEEeeecccccccccccccceeccccccCccceEEEeeeeEEEecCCCCccccccc
Confidence            9999999999998888999999999999999998888777632              469999999999999952   33


Q ss_pred             CC-----CceechhhHHhccCCCCcEEEECCChHH
Q psy14461        224 RN-----SALISADDLFRLGAWPGKTLVLGGSLMA  253 (535)
Q Consensus       224 ~G-----~~v~~~~~~~~~~~~~k~vvViGgG~~g  253 (535)
                      |+     ..++++++++.++..+ +..|+|+|.+|
T Consensus       160 ~~~~l~~~~i~ts~~~~~~d~~~-~t~Vig~gaiG  193 (259)
T d1onfa1         160 ENLKLEKLNVETNNNYIVVDENQ-RTSVNNIYAVG  193 (259)
T ss_dssp             TTSSCTTTTCCBSSSCEEECTTC-BCSSSSEEECS
T ss_pred             cccccccceeeecccccccccCC-ceeEeeEEEEE
Confidence            44     4678889888887766 55788888776

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.71  E-value=1.9e-17  Score=152.12  Aligned_cols=152  Identities=20%  Similarity=0.122  Sum_probs=119.6

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC---------------------ccCcHHHHHHHHHhhhcCCeEE
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL---------------------KHFDQEMVRILLSSLTKAGVSI  298 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l---------------------~~~~~~~~~~~~~~l~~~gV~i  298 (535)
                      .++|+|||||++|+++|..++|+|.+|+++++ ....                     ....+++...+++.+++.|+++
T Consensus         5 ~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~q~~~~g~~i   84 (192)
T d1vdca1           5 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTTI   84 (192)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEE
T ss_pred             cceEEEECCCHHHHHHHHHHHHcCCcEEEEEeecccccccccccccchhhhccccccccccchHHHHHHHHHHHhhccee
Confidence            47899999999999999999999999999985 3210                     0124677788888888889999


Q ss_pred             -cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCC-----CCCCCCCCccccCeeecCCCceEcCC-CCCcC
Q psy14461        299 -QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEK-----KFDFAALNLHHIGVDIKKKSYVVCNE-KDQTS  371 (535)
Q Consensus       299 -~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~-----~p~~~~l~l~~~gl~~~~~G~i~vd~-~~~T~  371 (535)
                       .. .|.+++.. +....+..    +..  ...+|.+++++|.     .|++.++   ..++++|++|+|.+|+ +++|+
T Consensus        85 ~~~-~V~~~~~~-~~~~~v~~----~~~--~~~~~~~~~a~g~~~~g~~p~~~~~---~~~veld~~G~i~~~~~~~~Ts  153 (192)
T d1vdca1          85 FTE-TVTKVDFS-SKPFKLFT----DSK--AILADAVILAIGAVAKGHEPATKFL---DGGVELDSDGYVVTKPGTTQTS  153 (192)
T ss_dssp             ECC-CCCEEECS-SSSEEEEC----SSE--EEEEEEEEECCCEEECCEEESCGGG---TTSSCBCTTSCBCCCTTSCBCS
T ss_pred             eee-eEEecccc-cCcEEecc----cce--eeeeeeEEEEeeeeecccCchHHHh---cCceeecCCCeEEeCCCceEec
Confidence             55 57777754 33344443    333  7889999999985     5777765   3468999999999995 78999


Q ss_pred             CCCEEEeCCcCCCCC-CcHHHHHHHHHHHHHHHh
Q psy14461        372 VGNIFAVGGIVHGKP-NNASMAAISARLIIERLY  404 (535)
Q Consensus       372 ~~~IyA~GD~~~~~~-~~~~~A~~~g~~aa~~i~  404 (535)
                      .|+|||+|||+ +.+ ..+..|..+|+.||.++.
T Consensus       154 ~~GV~a~GDv~-~~~~r~~v~A~g~G~~aA~~~~  186 (192)
T d1vdca1         154 VPGVFAAGDVQ-DKKYRQAITAAGTGCMAALDAE  186 (192)
T ss_dssp             STTEEECGGGG-CSSCCCHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEeeecC-CcccceEEEEEechHHHHHHHH
Confidence            99999999999 544 578899999999998874

>d1nhpa3 d.87.1.1 (A:322-447) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.68  E-value=1e-16  Score=136.37  Aligned_cols=90  Identities=22%  Similarity=0.246  Sum_probs=72.7

Q ss_pred             EEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcchhhhhhccCCcccccccccCcceEEEEEEECC
Q psy14461        419 VVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKG  498 (535)
Q Consensus       419 ~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~  498 (535)
                      .+| +|++|+||+||+||++.+.  ++.+...........+ +                       +.++||+||++|++
T Consensus         9 ~vf-d~eiasvGlte~eA~~~g~--~~~~~~~~~~~~~~~~-~-----------------------~~~~g~~Kli~d~~   61 (126)
T d1nhpa3           9 AVF-DYKFASTGINEVMAQKLGK--ETKAVTVVEDYLMDFN-P-----------------------DKQKAWFKLVYDPE   61 (126)
T ss_dssp             EET-TEEEEEEECCHHHHHHHTC--CCEEEEEEEESSCTTC-T-----------------------TCCEEEEEEEECTT
T ss_pred             eEc-CccEEEecccHHHHHHCCC--CEEEEEEecCcchhhc-C-----------------------CCcceeEEEEEECC
Confidence            445 9999999999999999854  5666554433221111 1                       24689999999999


Q ss_pred             CCeEEEEEEEcCc-hhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461        499 GERVLGIHVIGQN-VAGMIFGYSLALRKFLTKAELDGT  535 (535)
Q Consensus       499 ~~~ilGa~~~G~~-a~e~i~~~~~~i~~~~t~~~l~~~  535 (535)
                      |++|||+|++|++ |.|+|+.+++||++++|++||.++
T Consensus        62 t~~IlG~~ivG~~~a~e~I~~~~~ai~~~~t~~dL~~~   99 (126)
T d1nhpa3          62 TTQILGAQLMSKADLTANINAISLAIQAKMTIEDLAYA   99 (126)
T ss_dssp             TCBEEEEEEEESSCCTTHHHHHHHHHHTTCBHHHHHTC
T ss_pred             CCCEEEEEEEechhHHHHHHHHHHHHHcCCCHHHHhcC
Confidence            9999999999975 999999999999999999999864

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.66  E-value=7.6e-17  Score=136.62  Aligned_cols=111  Identities=20%  Similarity=0.305  Sum_probs=93.0

Q ss_pred             eecC-CCCC-CceechhhHHhcc------CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHH
Q psy14461        218 RCLP-EPRN-SALISADDLFRLG------AWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILL  288 (535)
Q Consensus       218 ~p~~-~i~G-~~v~~~~~~~~~~------~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~  288 (535)
                      ||+. +||| +++++..++.++.      ..+++++|||||++|+|+|..|+++|.+||++++ +.+++ +++++.+.+.
T Consensus         1 R~r~p~ipG~e~~~t~~~~~d~~~l~~~~~~~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l~~-~d~~~~~~~~   79 (122)
T d1xhca2           1 RAREPQIKGKEYLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG-LDEELSNMIK   79 (122)
T ss_dssp             EECCCCSBTGGGEECCCSHHHHHHHHHHHHHHSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT-CCHHHHHHHH
T ss_pred             CCCCcCCCCccceEccCCHHHHHHHHHHhhcCCcEEEECCcHHHHHHHHHhhcccceEEEEeccccccC-CCHHHHHHHH
Confidence            5777 8999 7777665544332      2458999999999999999999999999999999 88876 8999999999


Q ss_pred             HhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCC
Q psy14461        289 SSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEK  340 (535)
Q Consensus       289 ~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~  340 (535)
                      +.|+++||++ +++++++++.+  +   +..    +++  .+++|.|++|+|.
T Consensus        80 ~~l~~~GV~~~~~~~v~~~~~~--~---v~~----~~~--~i~~D~vi~a~Gv  121 (122)
T d1xhca2          80 DMLEETGVKFFLNSELLEANEE--G---VLT----NSG--FIEGKVKICAIGI  121 (122)
T ss_dssp             HHHHHTTEEEECSCCEEEECSS--E---EEE----TTE--EEECSCEEEECCE
T ss_pred             HHHHHCCcEEEeCCEEEEEeCC--E---EEe----CCC--EEECCEEEEEEEe
Confidence            9999999999 99999998642  1   322    566  7999999999995

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=99.66  E-value=3.8e-16  Score=142.89  Aligned_cols=152  Identities=16%  Similarity=0.113  Sum_probs=114.9

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcC------------C----ccCcHHHHHHHHHhhhcCCeEE-cceE
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRL------------L----KHFDQEMVRILLSSLTKAGVSI-QCCV  302 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~------------l----~~~~~~~~~~~~~~l~~~gV~i-~~~~  302 (535)
                      .++|+|||||++|+++|.+++|.|.+|+++++ +..            .    .....++.+.+...+.+.++++ .. .
T Consensus         5 ~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~   83 (190)
T d1trba1           5 HSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFD-H   83 (190)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEECC-C
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEEeecccccccccchhhhhhccccccchHHHHHHHHHHHHhcCcEEecc-e
Confidence            46899999999999999999999999999986 321            0    1224677777888888889998 54 5


Q ss_pred             EEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCC-----CCCCCccccCeeecCCCceEcCC-----CCCcCC
Q psy14461        303 IEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFD-----FAALNLHHIGVDIKKKSYVVCNE-----KDQTSV  372 (535)
Q Consensus       303 v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~-----~~~l~l~~~gl~~~~~G~i~vd~-----~~~T~~  372 (535)
                      |+++... ++...++.    ...  .++++.+++++|..|.     ..++   ...++++ +|+|.+|+     .++|++
T Consensus        84 V~~~~~~-~~~~~v~~----~~~--~~~~~~viva~G~~~~~~~~~~~~~---~~~~e~~-~g~i~~~~~~~~~~~~T~v  152 (190)
T d1trba1          84 INKVDLQ-NRPFRLNG----DNG--EYTCDALIIATGASARYHSPNTAIF---EGQLELE-NGYIKVQSGIHGNATQTSI  152 (190)
T ss_dssp             EEEEECS-SSSEEEEE----SSC--EEEEEEEEECCCEEECCEEESCGGG---TTTSCEE-TTEECCCCSSSSCTTBCSS
T ss_pred             eEEEecC-CCcEEEEE----eee--eEeeeeeeeecceeeeeecccceee---cceEecC-CcEEEEecCCccccccccc
Confidence            7777765 44455554    333  7899999999997654     3333   1235555 68899984     568999


Q ss_pred             CCEEEeCCcCCCCCCcHHHHHHHHHHHHHHHh
Q psy14461        373 GNIFAVGGIVHGKPNNASMAAISARLIIERLY  404 (535)
Q Consensus       373 ~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~  404 (535)
                      |+|||+|||+....+++..|..+|..||.++.
T Consensus       153 ~gV~aaGDv~~~~~~q~i~Aag~G~~AA~~a~  184 (190)
T d1trba1         153 PGVFAAGDVMDHIYRQAITSAGTGCMAALDAE  184 (190)
T ss_dssp             TTEEECGGGGCSSSCCHHHHHHHHHHHHHHHH
T ss_pred             CeEEEeEEecCcceeEEEEEeccHHHHHHHHH
Confidence            99999999993234688899999999998764

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.65  E-value=4.4e-16  Score=131.41  Aligned_cols=108  Identities=20%  Similarity=0.250  Sum_probs=91.5

Q ss_pred             CCCC--Ccee---chhhHHhcc---CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCc-cCcHHHHHHHHHhh
Q psy14461        222 EPRN--SALI---SADDLFRLG---AWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLK-HFDQEMVRILLSSL  291 (535)
Q Consensus       222 ~i~G--~~v~---~~~~~~~~~---~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~-~~~~~~~~~~~~~l  291 (535)
                      ++||  .+++   +.+|+..+.   ..+++++|||||++|+|+|..|+++|.+||++++ +++++ .+++++++.+++.+
T Consensus         3 ~ipG~~~~v~~lrtl~Da~~l~~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~~l   82 (121)
T d1d7ya2           3 TLQGATMPVHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVARYH   82 (121)
T ss_dssp             GGTTCSSCEEECCSHHHHHHHHHHCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHH
T ss_pred             cCCCCCCCEEEeCCHHHHHHHHHhhhcCCeEEEECcchhHHHHHHHhhcccceEEEEeeccccccccCCHHHHHHHHHHH
Confidence            5777  3344   556666543   3478999999999999999999999999999999 99987 78999999999999


Q ss_pred             hcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccC
Q psy14461        292 TKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAME  339 (535)
Q Consensus       292 ~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G  339 (535)
                      +++||++ ++.+++++..   +  .+++   .||+  ++++|+|++|+|
T Consensus        83 ~~~GV~i~~~~~v~~~~~---~--~v~l---~dg~--~i~~D~vi~a~G  121 (121)
T d1d7ya2          83 AAQGVDLRFERSVTGSVD---G--VVLL---DDGT--RIAADMVVVGIG  121 (121)
T ss_dssp             HTTTCEEEESCCEEEEET---T--EEEE---TTSC--EEECSEEEECSC
T ss_pred             HHCCcEEEeCCEEEEEeC---C--EEEE---CCCC--EEECCEEEEeeC
Confidence            9999999 9999998863   3  3556   3787  899999999998

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.65  E-value=8.1e-16  Score=130.03  Aligned_cols=112  Identities=18%  Similarity=0.197  Sum_probs=93.1

Q ss_pred             CceechhhHHh-cc-CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cce
Q psy14461        226 SALISADDLFR-LG-AWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCC  301 (535)
Q Consensus       226 ~~v~~~~~~~~-~~-~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~  301 (535)
                      +++++...+.. ++ ..+++++|||||++|+|+|..|+++|.+|+++++ +++++.+++++++.+++.++++||++ +++
T Consensus         5 ~gv~~~~~~~~~l~~~~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l~~~d~~~~~~~~~~l~~~gI~v~~~~   84 (121)
T d1mo9a2           5 KGVFDHATLVEELDYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLIKDNETRAYVLDRMKEQGMEIISGS   84 (121)
T ss_dssp             BTEEEHHHHHHHCCSCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTCCSHHHHHHHHHHHHHTTCEEESSC
T ss_pred             CCEEeHHHHHHHHhhCCCCEEEEECCCHHHHHHHHHHHhcchhheEeeccchhhcccccchhhhhhhhhhccccEEEcCC
Confidence            45777666543 33 3468999999999999999999999999999999 99999999999999999999999999 999


Q ss_pred             EEEEEEEeCCCcEE-EEEecCCCCCceEEEcCEEEEccC
Q psy14461        302 VIEKVISSFDGMKG-VRGFHPESKEPFADVFKTVVNAME  339 (535)
Q Consensus       302 ~v~~i~~~~~~~~~-v~~~~~~~G~~~~~~~D~vi~a~G  339 (535)
                      ++++|+.++++... +....  .+.++++++|.||+|+|
T Consensus        85 ~v~~i~~~~~~~~~~~~~~~--~~~~~~i~~D~Vi~a~G  121 (121)
T d1mo9a2          85 NVTRIEEDANGRVQAVVAMT--PNGEMRIETDFVFLGLG  121 (121)
T ss_dssp             EEEEEEECTTSBEEEEEEEE--TTEEEEEECSCEEECCC
T ss_pred             EEEEEEecCCceEEEEEEEe--CCCCEEEEcCEEEEEEC
Confidence            99999987555543 22222  34445899999999998

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.64  E-value=1.2e-16  Score=137.44  Aligned_cols=107  Identities=21%  Similarity=0.172  Sum_probs=90.2

Q ss_pred             eechhhHHhcc---CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCc-cCcHHHHHHHHHhhhcCCeEE-cce
Q psy14461        228 LISADDLFRLG---AWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLK-HFDQEMVRILLSSLTKAGVSI-QCC  301 (535)
Q Consensus       228 v~~~~~~~~~~---~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~-~~~~~~~~~~~~~l~~~gV~i-~~~  301 (535)
                      +.+.+|...+.   ..+++++|||||++|+|+|..|+++|.+||++++ +++++ .+++++.+.+++.++++||++ +++
T Consensus        19 lr~~~d~~~l~~~~~~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~~~~~~~~~~~~~~~~~~~GV~i~~~~   98 (133)
T d1q1ra2          19 LRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGT   98 (133)
T ss_dssp             SSSHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHHTCEEECSC
T ss_pred             eCCHHHHHHHHHhhccCCEEEEECCchHHHHHHHHHHhhCcceeeeeecccccccccchhhhhhhhhcccccccEEEeCC
Confidence            44566665443   4579999999999999999999999999999999 99887 579999999999999999999 999


Q ss_pred             EEEEEEEeCC-CcE-EEEEecCCCCCceEEEcCEEEEccC
Q psy14461        302 VIEKVISSFD-GMK-GVRGFHPESKEPFADVFKTVVNAME  339 (535)
Q Consensus       302 ~v~~i~~~~~-~~~-~v~~~~~~~G~~~~~~~D~vi~a~G  339 (535)
                      .+++++...+ +.+ .+.+   .+|+  ++++|.|++|+|
T Consensus        99 ~v~~i~~~~~~~~v~~v~~---~~G~--~i~~D~vi~a~G  133 (133)
T d1q1ra2          99 QVCGFEMSTDQQKVTAVLC---EDGT--RLPADLVIAGIG  133 (133)
T ss_dssp             CEEEEEECTTTCCEEEEEE---TTSC--EEECSEEEECCC
T ss_pred             eEEEEEEeCCCceEEEEEC---CCCC--EEECCEEEEeeC
Confidence            9999987532 233 3555   4888  899999999998

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=99.62  E-value=2.3e-15  Score=135.70  Aligned_cols=155  Identities=14%  Similarity=0.122  Sum_probs=106.1

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCC--CcEEEEEc-CcCCccCcHHHHHH----------HHHhhhcCCeEE-cceEEEEE
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLG--VPVTLVYS-RRLLKHFDQEMVRI----------LLSSLTKAGVSI-QCCVIEKV  306 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g--~~Vtlv~~-~~~l~~~~~~~~~~----------~~~~l~~~gV~i-~~~~v~~i  306 (535)
                      +|||+|||||++|+|+|..|++++  .+||++++ +.+...........          ....+..+++.+ .+. +..+
T Consensus         2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~   80 (186)
T d1fcda1           2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYDGLRAHGIQVVHDS-ATGI   80 (186)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCEECSTTHHHHHHTSSCGGGGEECSHHHHTTTEEEECCC-EEEC
T ss_pred             CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCccccccccccccchhhhhhhhhhhhhhccccceeEeeee-eEee
Confidence            689999999999999999999987  48999998 65544322211111          012234567777 543 3333


Q ss_pred             EEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCcccc------CeeecCCCceEcCCC-C-CcCCCCEEEe
Q psy14461        307 ISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHI------GVDIKKKSYVVCNEK-D-QTSVGNIFAV  378 (535)
Q Consensus       307 ~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~------gl~~~~~G~i~vd~~-~-~T~~~~IyA~  378 (535)
                      ..   ....+.+   .+++  ++++|.+++|+|.+|++..+.....      ++..+ ++++.++.. + .++.++||++
T Consensus        81 ~~---~~~~~~~---~~~~--~i~~D~li~atG~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~i  151 (186)
T d1fcda1          81 DP---DKKLVKT---AGGA--EFGYDRCVVAPGIELIYDKIEQRAGKIAQIAGLTND-AGWCPVDIKTFESSIHKGIHVI  151 (186)
T ss_dssp             CT---TTTEEEE---TTSC--EEECSEEEECCCEEECCTTSTEEECHHHHHHTCCCT-TSSEEBCSSSCBBSSSTTEEEC
T ss_pred             ee---ccceeec---ccce--eeccceEEEEeccccchhhhhhhhhhheeccCcccc-cccccceeeeeecccccCceEe
Confidence            22   2234444   3666  8999999999999999987632211      23333 455666543 3 4789999999


Q ss_pred             CCcCCC--CCCcHHHHHHHHHHHHHHHhC
Q psy14461        379 GGIVHG--KPNNASMAAISARLIIERLYG  405 (535)
Q Consensus       379 GD~~~~--~~~~~~~A~~~g~~aa~~i~g  405 (535)
                      ||++.+  .|+.+..|.+||+++|+||..
T Consensus       152 Gd~~~~~~~p~~~~~A~~q~~~~A~ni~~  180 (186)
T d1fcda1         152 GDASIANPMPKSGYSANSQGKVAAAAVVV  180 (186)
T ss_dssp             TTSEECTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred             ccccccCCCCchHhHHHHHHHHHHHHHHH
Confidence            999842  256788999999999999973

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.61  E-value=2.5e-15  Score=127.28  Aligned_cols=93  Identities=22%  Similarity=0.234  Sum_probs=82.0

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCc-cCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEE
Q psy14461        239 AWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLK-HFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKG  315 (535)
Q Consensus       239 ~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~-~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~  315 (535)
                      ..+++|+|||||++|+|+|..|+++|.+||++++ +++++ .+++++.+.+++.++++||++ +++.+++++++  +.+.
T Consensus        28 ~~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l~~~~d~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~--~~~~  105 (123)
T d1nhpa2          28 PEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGD--GRVQ  105 (123)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHHHHHHHHHHHTTTEEEEESCCEEEEECS--SBCC
T ss_pred             cCCCEEEEECChHHHHHHHHHhhccceEEEEEEecCcccccccchhhHHHHHHHhhcCCeEEEeCceEEEEEcC--CCEE
Confidence            3578999999999999999999999999999999 99986 589999999999999999999 99999999864  4443


Q ss_pred             EEEecCCCCCceEEEcCEEEEcc
Q psy14461        316 VRGFHPESKEPFADVFKTVVNAM  338 (535)
Q Consensus       316 v~~~~~~~G~~~~~~~D~vi~a~  338 (535)
                      ..+.   +|+  +++||+|++|+
T Consensus       106 ~v~~---dg~--~i~~D~vi~aI  123 (123)
T d1nhpa2         106 KVVT---DKN--AYDADLVVVAV  123 (123)
T ss_dssp             EEEE---SSC--EEECSEEEECS
T ss_pred             EEEe---CCC--EEECCEEEEEC
Confidence            3343   777  89999999985

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=99.58  E-value=9.8e-16  Score=135.58  Aligned_cols=132  Identities=15%  Similarity=0.065  Sum_probs=108.2

Q ss_pred             eeCceecC--CCCC-----CceechhhHHhccCCCCcEEEE---CCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHH
Q psy14461        214 AVERRCLP--EPRN-----SALISADDLFRLGAWPGKTLVL---GGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQE  282 (535)
Q Consensus       214 ATGs~p~~--~i~G-----~~v~~~~~~~~~~~~~k~vvVi---GgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~  282 (535)
                      |||+.|..  ||||     .+++|++|++..+..+++.+||   |||++|+|+|..|+++|++||++++ +.+++.++++
T Consensus         4 atG~~~~~~~pipG~~~~~~~v~t~~d~l~~~~~~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~~~~~~~   83 (156)
T d1djqa2           4 TDGTNCLTHDPIPGADASLPDQLTPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANYMHFTL   83 (156)
T ss_dssp             SSCCCTTTSSCCTTCCTTSTTEECHHHHHHTCSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTTHHHHTT
T ss_pred             CCCCCCCCCCCCCCccCCCCEEECHHHHhcCccccCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCccccccchh
Confidence            89999886  7999     3689999999988777665555   9999999999999999999999999 8888888888


Q ss_pred             HHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeec
Q psy14461        283 MVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIK  357 (535)
Q Consensus       283 ~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~  357 (535)
                      ....+.+.|++.||++ +++++.+|+.   +.+.+..     ..  ....+.++.++|..|+....  +..+++.|
T Consensus        84 ~~~~~~~~l~~~GV~i~~~~~v~~i~~---~~v~l~~-----~~--~~~~~~v~~~~g~~~~~~~~--~~~~le~D  147 (156)
T d1djqa2          84 EYPNMMRRLHELHVEELGDHFCSRIEP---GRMEIYN-----IW--GDGSKRTYRGPGVSPRDANT--SHRWIEFD  147 (156)
T ss_dssp             CHHHHHHHHHHTTCEEEETEEEEEEET---TEEEEEE-----TT--CSCSCCCCCCTTSCSSCCCC--CCEEEECS
T ss_pred             HHHHHHHHHhhccceEEeccEEEEecC---cceEEEe-----ee--ccccceeeeeeEEEecccCC--ccCcEecc
Confidence            8999999999999999 9999999984   3333332     21  23457788888988888875  55566654

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=9.2e-15  Score=126.20  Aligned_cols=105  Identities=16%  Similarity=0.244  Sum_probs=91.4

Q ss_pred             chhhHHhcc---CCCCcEEEECCChHHHHHHHHHHh----CCCcEEEEEc-CcCCc-cCcHHHHHHHHHhhhcCCeEE-c
Q psy14461        230 SADDLFRLG---AWPGKTLVLGGSLMAVEIAATLNF----LGVPVTLVYS-RRLLK-HFDQEMVRILLSSLTKAGVSI-Q  299 (535)
Q Consensus       230 ~~~~~~~~~---~~~k~vvViGgG~~g~e~A~~l~~----~g~~Vtlv~~-~~~l~-~~~~~~~~~~~~~l~~~gV~i-~  299 (535)
                      +.+|+..+.   +.+++++|||||++|+|+|..|++    .|.+||++++ +.+++ .+++++++.+.+.++++||++ +
T Consensus        23 ~~~d~~~l~~~~~~~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~~~~~~~~~~~~~~~l~~~GV~~~~  102 (137)
T d1m6ia2          23 KIGDFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMP  102 (137)
T ss_dssp             SHHHHHHHHHHHHHCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHTTTCEEEC
T ss_pred             CHHHHHHHHHHhhcCCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCcccCCHHHHHHHHHHHHhCCcEEEe
Confidence            666666553   347899999999999999999864    5899999999 88886 689999999999999999999 9


Q ss_pred             ceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCC
Q psy14461        300 CCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEK  340 (535)
Q Consensus       300 ~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~  340 (535)
                      ++.|++++.+ ++.+.+++   ++|+  ++++|.|++|+|.
T Consensus       103 ~~~V~~i~~~-~~~~~v~l---~~G~--~i~aD~Vi~A~Gv  137 (137)
T d1m6ia2         103 NAIVQSVGVS-SGKLLIKL---KDGR--KVETDHIVAAVGL  137 (137)
T ss_dssp             SCCEEEEEEE-TTEEEEEE---TTSC--EEEESEEEECCCE
T ss_pred             CCEEEEEEec-CCEEEEEE---CCCC--EEECCEEEEeecC
Confidence            9999999987 57778888   4787  8999999999984

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=99.54  E-value=3.4e-14  Score=128.56  Aligned_cols=155  Identities=15%  Similarity=0.124  Sum_probs=118.0

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc-C--cCC------------ccCcHHHHHHHHHhhhcCCeEE-cceEEEEE
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-R--RLL------------KHFDQEMVRILLSSLTKAGVSI-QCCVIEKV  306 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~--~~l------------~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i  306 (535)
                      .|+|||||++|+++|..++++|.+|+++++ .  ++.            ....+.+...++...++.+++. ....+..+
T Consensus         3 DViIIGgGpaGl~AAi~aar~G~~v~iie~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (184)
T d1fl2a1           3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQSASKL   82 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEECSSTTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSCCEEEE
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCeEEEEEEecCCcccccccceeccccchhhhHHHHHHHHHHhhheeceeeccceeeee
Confidence            589999999999999999999999999986 2  111            1123667777777778888888 77777777


Q ss_pred             EEeCCCcE-EEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCC
Q psy14461        307 ISSFDGMK-GVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGK  385 (535)
Q Consensus       307 ~~~~~~~~-~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~  385 (535)
                      ........ .....  .+++  ++.++.+++++|..++...+  ...++.....|.|.+|...+|+.|+||++|||. +.
T Consensus        83 ~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~g~i~v~~~~~t~~~gv~a~gd~~-~~  155 (184)
T d1fl2a1          83 IPAAVEGGLHQIET--ASGA--VLKARSIIVATGAKLPNTNW--LEGAVERNRMGEIIIDAKCETNVKGVFAAGDCT-TV  155 (184)
T ss_dssp             ECCSSTTCCEEEEE--TTSC--EEEEEEEEECCCEEEESCGG--GTTTSCBCTTSCBCCCTTCBCSSTTEEECSTTB-SC
T ss_pred             cccccccceeeeee--ecce--eeeccccccccccccccccc--ccccccccccceeccCCceeeeCCCEEEEeeec-Cc
Confidence            65422221 11111  2444  78999999999987766554  445566777899999999999999999999999 54


Q ss_pred             C-CcHHHHHHHHHHHHHHHh
Q psy14461        386 P-NNASMAAISARLIIERLY  404 (535)
Q Consensus       386 ~-~~~~~A~~~g~~aa~~i~  404 (535)
                      + +....|..+|..||.++.
T Consensus       156 ~~~~~vva~g~G~~aA~~~~  175 (184)
T d1fl2a1         156 PYKQIIIATGEGAKASLSAF  175 (184)
T ss_dssp             SSCCHHHHHHHHHHHHHHHH
T ss_pred             ccCCcEEEEECcHHHHHHHH
Confidence            4 578889999999988865

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=99.45  E-value=1e-15  Score=144.79  Aligned_cols=159  Identities=7%  Similarity=0.049  Sum_probs=99.3

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHH
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRF  167 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  167 (535)
                      ..+|+|||+|++|+.+|..+...+.+|+|+|+++.+++.... ...   +.+              ..++.....+....
T Consensus        49 ~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~GG~~~~-~~~---~~~--------------~~~~~~~~~~~~~~  110 (233)
T d1djqa3          49 KDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQ-VAA---LPG--------------LGEWSYHRDYRETQ  110 (233)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHH-HTT---STT--------------CGGGGHHHHHHHHH
T ss_pred             CceEEEEcccHHHHHHHHHHHHhccceeeEeeccccCCcccc-ccc---cce--------------eecccccchhHHHH
Confidence            467899999999999999988999999999999987543211 111   111              11222222222211


Q ss_pred             HHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEce-eEEEcceEEEeeCceecC-CCCC---Cceechhh---HHhccC
Q psy14461        168 CIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSN-RSVTGFNFLLAVERRCLP-EPRN---SALISADD---LFRLGA  239 (535)
Q Consensus       168 ~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~-~~~~~d~lViATGs~p~~-~i~G---~~v~~~~~---~~~~~~  239 (535)
                      .        ..+...+++....    ...+.+.... .++.||+||||||+.+.. .+++   +...+..+   ......
T Consensus       111 ~--------~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (233)
T d1djqa3         111 I--------TKLLKKNKESQLA----LGQKPMTADDVLQYGADKVIIATGASECTLWNELKARESEWAENDIKGIYLIGD  178 (233)
T ss_dssp             H--------HHHHTTCTTCEEE----CSCCCCCHHHHHTSCCSEEEECCCEECCHHHHHHHHTTHHHHHTTCCEEEECGG
T ss_pred             H--------HHHhhcceeeeee----cccccccchhhhhhccceeeeccCCCcccccccccccccccchhhhhhhhhccc
Confidence            1        1122223321110    1222222222 467899999999998876 4443   22222211   112234


Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC
Q psy14461        240 WPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL  276 (535)
Q Consensus       240 ~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l  276 (535)
                      ..++++|+|+|++|+|+|..|++.|.+||++++ +.++
T Consensus       179 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~r~~~~~  216 (233)
T d1djqa3         179 AEAPRLIADATFTGHRVAREIEEANPQIAIPYKRETIA  216 (233)
T ss_dssp             GTSCCCHHHHHHHHHHHHHTTTSSCTTSCCCCCCCCCC
T ss_pred             cCCceeEecCchHHHHHHHHHHhcCCceEEEEeccccc
Confidence            568999999999999999999999999999999 7654

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=99.39  E-value=1.5e-14  Score=130.00  Aligned_cols=129  Identities=12%  Similarity=0.031  Sum_probs=89.7

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRFC  168 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  168 (535)
                      .+|+|||+||+|+.+|+.+...+++|+|||+.+.+++... +...   ++              ...++.++.++.    
T Consensus        44 k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~GG~l~-~~~~---~p--------------~~~~~~~~~~~~----  101 (179)
T d1ps9a3          44 KNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFN-IAKQ---IP--------------GKEEFYETLRYY----  101 (179)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHH-HHTT---ST--------------TCTTHHHHHHHH----
T ss_pred             cEEEEECccHHHHHHHHHHHhhccceEEEeccCccCceEE-EEEe---Cc--------------ccchHHHHHHHH----
Confidence            5689999999999999999999999999999998755321 0001   11              122344444443    


Q ss_pred             HHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEceeEEEcceEEEeeCceecC-CCCCCceechhhHHhccCCCCcEEEE
Q psy14461        169 IRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAVERRCLP-EPRNSALISADDLFRLGAWPGKTLVL  247 (535)
Q Consensus       169 ~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~~~~~~d~lViATGs~p~~-~i~G~~v~~~~~~~~~~~~~k~vvVi  247 (535)
                             ..+++..||++..++..       +. +....||.||+|||+.|+. ++||            .+.+++++||
T Consensus       102 -------~~~~~~~gV~i~l~~~V-------t~-~~~~~~d~vilAtG~~~~~~~~pg------------~~~g~~v~vi  154 (179)
T d1ps9a3         102 -------RRMIEVTGVTLKLNHTV-------TA-DQLQAFDETILASGIPNRALAQPL------------IDSGKTVHLI  154 (179)
T ss_dssp             -------HHHHHHHTCEEEESCCC-------CS-SSSCCSSEEEECCCEECCTTHHHH------------HTTTCCEEEC
T ss_pred             -------HHhhhcCCeEEEeCCEE-------cc-cccccceeEEEeecCCCcccccch------------hccCCEEEEE
Confidence                   35667789998887531       11 1245799999999998876 5555            2247899999


Q ss_pred             CCChHHHHH-HHHHHhCCCc
Q psy14461        248 GGSLMAVEI-AATLNFLGVP  266 (535)
Q Consensus       248 GgG~~g~e~-A~~l~~~g~~  266 (535)
                      |+|++++++ +....+.|.+
T Consensus       155 gggd~a~~~~~~~Av~~G~~  174 (179)
T d1ps9a3         155 GGCDVAMELDARRAIAQGTR  174 (179)
T ss_dssp             GGGTCCSSCCHHHHHHHHHH
T ss_pred             CCcHhhhhccchhhhhccCE
Confidence            999999886 4444444443

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.34  E-value=1.8e-12  Score=114.79  Aligned_cols=115  Identities=15%  Similarity=0.084  Sum_probs=89.9

Q ss_pred             ecC-CCCC---CceechhhHHhc-cCCCCcEEEECCChHHHHHHHHHHhCCCc---------------------------
Q psy14461        219 CLP-EPRN---SALISADDLFRL-GAWPGKTLVLGGSLMAVEIAATLNFLGVP---------------------------  266 (535)
Q Consensus       219 p~~-~i~G---~~v~~~~~~~~~-~~~~k~vvViGgG~~g~e~A~~l~~~g~~---------------------------  266 (535)
                      |+. +|||   ++++++.|++.- ...+++|+|||||++|+|+|..+++.|.+                           
T Consensus         2 Pr~p~IpG~d~~~V~~a~d~L~~~~~~gkrVvVIGgG~~g~d~a~~~~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (162)
T d1ps9a2           2 PRTPPIDGIDHPKVLSYLDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGLSPQ   81 (162)
T ss_dssp             ECCCCCBTTTSTTEEEHHHHHTSCCCCCSEEEEECCHHHHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTTCCSGGGBCTT
T ss_pred             CCCCCCCCCCCCCeEEHHHHhhCccccCCceEEEcCchhHHHHHHHHHHcCCccceeHhhhhhhccCCcchhhhcccccc
Confidence            777 8999   789999998853 35679999999999999999999999864                           


Q ss_pred             ----------EEEEEc--CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCE
Q psy14461        267 ----------VTLVYS--RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKT  333 (535)
Q Consensus       267 ----------Vtlv~~--~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~  333 (535)
                                ++++..  ......++..........++..||++ +++.+.+|+.   +.+.+..    +|++++++||.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~---~gv~~~~----~g~e~~i~aD~  154 (162)
T d1ps9a2          82 GMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKIDD---DGLHVVI----NGETQVLAVDN  154 (162)
T ss_dssp             CCCCCCCSSEEEEECSSCSCTTTTSCTTTHHHHHHHHHHTTCEEECSCEEEEEET---TEEEEEE----TTEEEEECCSE
T ss_pred             cceeccccceEEEEEeccchhccccchhhhHHHHHHHhhCCeEEEeeeEEEEEcC---CCCEEec----CCeEEEEECCE
Confidence                      333333  23334455556667788889999999 9999999973   3344443    68878899999


Q ss_pred             EEEccCC
Q psy14461        334 VVNAMEK  340 (535)
Q Consensus       334 vi~a~G~  340 (535)
                      |++|+|+
T Consensus       155 Vv~A~Gq  161 (162)
T d1ps9a2         155 VVICAGQ  161 (162)
T ss_dssp             EEECCCE
T ss_pred             EEECCCC
Confidence            9999995

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.24  E-value=8e-12  Score=119.41  Aligned_cols=185  Identities=19%  Similarity=0.228  Sum_probs=102.2

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEcCcCCc-----------------------------------cCc-------
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLK-----------------------------------HFD-------  280 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~l~-----------------------------------~~~-------  280 (535)
                      .++|||||+.|+.+|..++++|.+|.++++..+..                                   .++       
T Consensus         3 DviVIG~G~aG~~aA~~aa~~G~~V~liE~~~~GGtc~n~gciPsK~l~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~   82 (259)
T d1onfa1           3 DLIVIGGGSGGMAAARRAARHNAKVALVEKSRLGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDTKFSFNLPLLVER   82 (259)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSSTTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCHHHHHHH
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCeEEeeCCcchHHHHhhhhcccchhccccccccchhhhhhhhHHhh
Confidence            48999999999999999999999999999732210                                   000       


Q ss_pred             -----HHHHHHHHHhhhcCCeEE-cceE-E---E--EEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCC-----C
Q psy14461        281 -----QEMVRILLSSLTKAGVSI-QCCV-I---E--KVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKF-----D  343 (535)
Q Consensus       281 -----~~~~~~~~~~l~~~gV~i-~~~~-v---~--~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p-----~  343 (535)
                           ..+.+.+...+++.||++ .+.. .   .  .+... ++......   ..+.++.+.+|.+++|||.+|     +
T Consensus        83 ~~~~i~~~~~~~~~~l~~~gV~vi~G~a~f~~~~~v~v~~~-~~~~~~~~---~~~~~~~i~a~~iiIATGs~P~~~~~~  158 (259)
T d1onfa1          83 RDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSENRILIKGT-KDNNNKDN---GPLNEEILEGRNILIAVGNKPVGRSPD  158 (259)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCEEEESCCCCC------------------------------CBSSEEECCCCCBCCBCCT
T ss_pred             hheeeeccccchhhhcccccceEEeeecccccccccccccc-eecccccc---CccceEEEeeeeEEEecCCCCcccccc
Confidence                 112233455677889988 5421 1   1  11111 00000000   112234799999999999999     5


Q ss_pred             CCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEEcC
Q psy14461        344 FAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGD  423 (535)
Q Consensus       344 ~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~  423 (535)
                      .+.++++..++..+ ++++.+|+..+|++.++|++||++ ........+..+...+..+    ..........+..+++.
T Consensus       159 ~~~~~l~~~~i~ts-~~~~~~d~~~~t~Vig~gaiGdv~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~  232 (259)
T d1onfa1         159 TENLKLEKLNVETN-NNYIVVDENQRTSVNNIYAVGDCC-MVKKSKEIEDLNLLKLYNE----ERYLNKKENVTEDIFYN  232 (259)
T ss_dssp             TTTSSCTTTTCCBS-SSCEEECTTCBCSSSSEEECSTTE-EEC----------------------------------CBC
T ss_pred             ccccccccceeeec-ccccccccCCceeEeeEEEEEEee-ehhhhhhhcchhhHhhhcC----CccccccCCcceEEecC
Confidence            66666677777654 788999999999999999999998 4333333332222222211    22223344567888899


Q ss_pred             CceeeecCCHHHHH
Q psy14461        424 VEFGTVGMSEEAAA  437 (535)
Q Consensus       424 ~~~a~vG~te~~a~  437 (535)
                      +++..|+.++.+..
T Consensus       233 ~~~~~V~~~~G~~~  246 (259)
T d1onfa1         233 VQLTPVAINAGRLL  246 (259)
T ss_dssp             CCCHHHHHHHHHHH
T ss_pred             cEEEEEEcccceeE
Confidence            99998888776654

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=99.21  E-value=1.6e-10  Score=97.31  Aligned_cols=95  Identities=18%  Similarity=0.062  Sum_probs=75.5

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEE
Q psy14461        240 WPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVR  317 (535)
Q Consensus       240 ~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~  317 (535)
                      .+|+|+|||||++|+|.|..|++...+||+++| +.+..  ++...+.   .....+|++ +++.++++.++++....++
T Consensus        29 ~gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~~~~--~~~~~~~---~~~~~~I~v~~~~~v~~i~G~~~~v~~v~  103 (126)
T d1fl2a2          29 KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA--DQVLQDK---LRSLKNVDIILNAQTTEVKGDGSKVVGLE  103 (126)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCCS--CHHHHHH---HHTCTTEEEESSEEEEEEEESSSSEEEEE
T ss_pred             CCceEEEEeCCHHHHHHHHhhhccCCceEEEeccccccc--ccccccc---cccccceeEEcCcceEEEEccccceeeEE
Confidence            469999999999999999999999999999999 66532  3333332   233467999 9999999998632333577


Q ss_pred             EecCCCCCceEEEcCEEEEccC
Q psy14461        318 GFHPESKEPFADVFKTVVNAME  339 (535)
Q Consensus       318 ~~~~~~G~~~~~~~D~vi~a~G  339 (535)
                      +.+..+|+++++++|.+|+++|
T Consensus       104 l~~~~tge~~~l~vdgvFv~IG  125 (126)
T d1fl2a2         104 YRDRVSGDIHNIELAGIFVQIG  125 (126)
T ss_dssp             EEETTTCCEEEEECSEEEECSC
T ss_pred             EEECCCCCEEEEECCEEEEEeC
Confidence            8766678888999999999998

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=99.17  E-value=2e-10  Score=96.78  Aligned_cols=97  Identities=19%  Similarity=0.186  Sum_probs=80.2

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcE-EE
Q psy14461        240 WPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMK-GV  316 (535)
Q Consensus       240 ~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~-~v  316 (535)
                      .+|+|+|||||++|+|.|..|++.+.+||+++| +.+.  .++.+.+.+.+..+..+|.+ +++.+.++.++ +..+ .|
T Consensus        26 ~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~v~~i~G~-~~~v~~v  102 (126)
T d1trba2          26 RNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR--AEKILIKRLMDKVENGNIILHTNRTLEEVTGD-QMGVTGV  102 (126)
T ss_dssp             TTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCC--CCHHHHHHHHHHHHTSSEEEECSCEEEEEEEC-SSSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeeccccc--chhHHHHHHHHhhcccceeEecceEEEEEECC-CCceEEE
Confidence            468999999999999999999999999999999 6643  36777888888888889999 99999999986 3434 57


Q ss_pred             EEecCCCCC-ceEEEcCEEEEccC
Q psy14461        317 RGFHPESKE-PFADVFKTVVNAME  339 (535)
Q Consensus       317 ~~~~~~~G~-~~~~~~D~vi~a~G  339 (535)
                      ++.++.+++ .+++++|.+|+++|
T Consensus       103 ~l~~~~~~e~~~~l~~dgvFv~iG  126 (126)
T d1trba2         103 RLRDTQNSDNIESLDVAGLFVAIG  126 (126)
T ss_dssp             EEECCTTCCCCEEEECSEEEECSC
T ss_pred             EEEECCCCceEEEEECCEEEEEeC
Confidence            777543443 35799999999987

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.15  E-value=1.7e-11  Score=111.49  Aligned_cols=151  Identities=16%  Similarity=0.132  Sum_probs=100.0

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCC-cEEEEEc-CcCCc---------cCcHHHHHHHHHhhhcCCeEE-cceEEEEEE
Q psy14461        240 WPGKTLVLGGSLMAVEIAATLNFLGV-PVTLVYS-RRLLK---------HFDQEMVRILLSSLTKAGVSI-QCCVIEKVI  307 (535)
Q Consensus       240 ~~k~vvViGgG~~g~e~A~~l~~~g~-~Vtlv~~-~~~l~---------~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~  307 (535)
                      .++||+|||||++|+++|..|+++|. +|+|+++ +.+..         .................+..+ ....+....
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~   82 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSENE   82 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHTTTCEEEESCCBSTTS
T ss_pred             CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcccchhhhhccccccccccccchhhhhhccceeEEeeEEeccce
Confidence            57999999999999999999999998 5999999 76543         123444444445555566666 554432110


Q ss_pred             EeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCC--ccccCeeecCCCceEcC-CCCCcCCCCEEEeCCcCCC
Q psy14461        308 SSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALN--LHHIGVDIKKKSYVVCN-EKDQTSVGNIFAVGGIVHG  384 (535)
Q Consensus       308 ~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~--l~~~gl~~~~~G~i~vd-~~~~T~~~~IyA~GD~~~~  384 (535)
                              ....   +..  +..+|.+++++|..+......  ...........+....+ ..++|+.|.||++||++ +
T Consensus        83 --------~~~~---~~~--~~~~~~~~ia~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~vi-g  148 (196)
T d1gtea4          83 --------ITLN---TLK--EEGYKAAFIGIGLPEVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIV-G  148 (196)
T ss_dssp             --------BCHH---HHH--HTTCCEEEECCCCCEECCCHHHHHHTTTSCBCTTSSBCCCTTTCBCSSTTEEECSGGG-C
T ss_pred             --------eeee---hhh--ccccceeeEEeccccCCccccccccccccccccccceeccccccCCCccccccccccc-C
Confidence                    0010   111  345788999998654433211  01112222334445554 45789999999999999 8


Q ss_pred             CCCcHHHHHHHHHHHHHHHh
Q psy14461        385 KPNNASMAAISARLIIERLY  404 (535)
Q Consensus       385 ~~~~~~~A~~~g~~aa~~i~  404 (535)
                      +..++..|..+|+.+|..+.
T Consensus       149 g~~~av~a~~~g~~~a~~v~  168 (196)
T d1gtea4         149 MANTTVESVNDGKQASWYIH  168 (196)
T ss_dssp             SCCCHHHHHHHHHHHHHHHH
T ss_pred             CcchHHHHHHHHhhhehhHh
Confidence            88899999999999888764

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.04  E-value=9.5e-10  Score=95.68  Aligned_cols=109  Identities=19%  Similarity=0.194  Sum_probs=75.7

Q ss_pred             CceechhhHHhc----------------cCCCCcEEEECCChHHHHHHHHHHhCCC-cEEEEEc-CcCC-ccCcHHHHHH
Q psy14461        226 SALISADDLFRL----------------GAWPGKTLVLGGSLMAVEIAATLNFLGV-PVTLVYS-RRLL-KHFDQEMVRI  286 (535)
Q Consensus       226 ~~v~~~~~~~~~----------------~~~~k~vvViGgG~~g~e~A~~l~~~g~-~Vtlv~~-~~~l-~~~~~~~~~~  286 (535)
                      ++++++.|++..                ...+++|+|||||++|+|+|..+.++|+ +|++++| +..- +....+.   
T Consensus        14 ~G~~~a~dfL~~~~~~~~~~~~~~~~~~p~~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~~~~~a~~~~~---   90 (153)
T d1gtea3          14 QGFYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRAVPEEV---   90 (153)
T ss_dssp             TTEEEHHHHHHHHHHHHCBTTBSCCCCCCCCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGGGCCSCHHHH---
T ss_pred             CCEEEHHHHHHHHHhccccCCCcccCccccCCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCChhhhccchhhe---
Confidence            678888888742                1346899999999999999999999986 5889988 5433 2222222   


Q ss_pred             HHHhhhcCCeEE-cceEEEEEEEeCCCcE-EEEE---ecCC-------CCCceEEEcCEEEEccCC
Q psy14461        287 LLSSLTKAGVSI-QCCVIEKVISSFDGMK-GVRG---FHPE-------SKEPFADVFKTVVNAMEK  340 (535)
Q Consensus       287 ~~~~l~~~gV~i-~~~~v~~i~~~~~~~~-~v~~---~~~~-------~G~~~~~~~D~vi~a~G~  340 (535)
                        ..+...++++ .+..+.++... +++. .+..   +...       +|++++++||.||+|+|.
T Consensus        91 --~~a~~~~~~~~~~~~~~ei~~~-~~~~~~v~~~~~e~d~~G~~~~~~g~e~~i~aD~V~~AiG~  153 (153)
T d1gtea3          91 --ELAKEEKCEFLPFLSPRKVIVK-GGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGS  153 (153)
T ss_dssp             --HHHHHTTCEEECSEEEEEEEEE-TTEEEEEEEEEEEECTTSCEEEEEEEEEEEECSEEEECSCE
T ss_pred             --eecccccceeEeccccEEEEec-CCceEEEEEEEeeECCCCCEecCCCCEEEEECCEEEECcCc
Confidence              2334567888 88888888775 3432 2221   1111       356678999999999983

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.03  E-value=9.8e-10  Score=103.53  Aligned_cols=155  Identities=21%  Similarity=0.210  Sum_probs=105.2

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc--------------C----------------------------
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH--------------F----------------------------  279 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~--------------~----------------------------  279 (535)
                      .|+|||+|++|+-+|..|++.|.+|+|+++ +.+...              .                            
T Consensus         4 DViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (251)
T d2i0za1           4 DVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFNNEDI   83 (251)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSCHHHH
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCcceeccCCcceecccccccchhhcccccchhhhhhhhhhhhhHHH
Confidence            599999999999999999999999999998 543110              0                            


Q ss_pred             -------------------------cHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEE-EEEecCCCCCceEEEcC
Q psy14461        280 -------------------------DQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKG-VRGFHPESKEPFADVFK  332 (535)
Q Consensus       280 -------------------------~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~-v~~~~~~~G~~~~~~~D  332 (535)
                                               ..++.+.+.+.+++.||++ .+++|++|..+ ++.+. |.+   .+|+  .+.+|
T Consensus        84 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~L~~~~~~~gv~i~~~~~v~~i~~~-~~~~~~v~~---~~g~--~i~a~  157 (251)
T d2i0za1          84 ITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYE-NGQTKAVIL---QTGE--VLETN  157 (251)
T ss_dssp             HHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEE-TTEEEEEEE---TTCC--EEECS
T ss_pred             HHHHHhcCCccccccccceecccccHHHHHHHHHHHHHHcCCcccCCcEEEEEEEE-CCEEEEEEe---CCCC--eEecC
Confidence                                     0223445566777889999 99999999877 45553 555   3777  89999


Q ss_pred             EEEEccCCCCCCCC--CC-----ccccCeeecC--CCce-----EcCCCCCcCCCCEEEeCCcCC-----CCCCcHHHHH
Q psy14461        333 TVVNAMEKKFDFAA--LN-----LHHIGVDIKK--KSYV-----VCNEKDQTSVGNIFAVGGIVH-----GKPNNASMAA  393 (535)
Q Consensus       333 ~vi~a~G~~p~~~~--l~-----l~~~gl~~~~--~G~i-----~vd~~~~T~~~~IyA~GD~~~-----~~~~~~~~A~  393 (535)
                      .||+|+|-......  -+     .+..+.++.+  .+.+     ..++...+..|++|++|++..     ++ .....|.
T Consensus       158 ~vI~AtGg~S~p~~Gs~g~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~l~~~~~~gG-~~~~~a~  236 (251)
T d2i0za1         158 HVVIAVGGKSVPQTGSTGDGYAWAEKAGHTITELFGGGVSVKEINPKEMSSKFTNGLYFCGEVLDIHGYTGG-YNITSAL  236 (251)
T ss_dssp             CEEECCCCSSSGGGSCSSHHHHHHHHTTCCEEEEEEEEECGGGEETTTTEESSSBTEEECGGGBSCBCCTTT-HHHHHHH
T ss_pred             eEEEccCCccccccCCCcccchhcccceeeeeeeeecccCccccCchhHHHhcCCCcEeeeeEEEccCCcch-HHHHHHH
Confidence            99999996542211  00     1223333321  1111     112222357899999999864     22 2346789


Q ss_pred             HHHHHHHHHHh
Q psy14461        394 ISARLIIERLY  404 (535)
Q Consensus       394 ~~g~~aa~~i~  404 (535)
                      ..|++|+.++.
T Consensus       237 ~~G~~a~~~~~  247 (251)
T d2i0za1         237 VTGRIAGTTAG  247 (251)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998874

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=98.98  E-value=5.9e-10  Score=107.33  Aligned_cols=109  Identities=13%  Similarity=0.054  Sum_probs=66.5

Q ss_pred             CeEE-cceEEEEEEEeCCCc-----EEEEEecCCCCCceEEEcCEEEEccCCCCCCC--------CCCcccc-Cee-ecC
Q psy14461        295 GVSI-QCCVIEKVISSFDGM-----KGVRGFHPESKEPFADVFKTVVNAMEKKFDFA--------ALNLHHI-GVD-IKK  358 (535)
Q Consensus       295 gV~i-~~~~v~~i~~~~~~~-----~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~--------~l~l~~~-gl~-~~~  358 (535)
                      +.++ +++.|++|....++.     ..+.......++.+.+++|.||+|++..+-..        .+..... .+. .+.
T Consensus       243 ~~~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~Vi~a~p~~~l~~l~~~~~~~~~~~~~~~~~~~~~~  322 (373)
T d1seza1         243 EDELRLNSRVLELSCSCTEDSAIDSWSIISASPHKRQSEEESFDAVIMTAPLCDVKSMKIAKRGNPFLLNFIPEVYGHNY  322 (373)
T ss_dssp             TTTEETTCCEEEEEEECSSSSSSCEEEEEEBCSSSSCBCCCEESEEEECSCHHHHHTSEEESSSSBCCCTTSCCCCCTTH
T ss_pred             cceEecCCEEEEEEEeCCcccccccceEEecccCCCCceEEECCEEEECCchHHhhhcccccCCCccchhhhccccccCC
Confidence            5578 888999997653221     12333222234445789999999986421100        0000000 000 011


Q ss_pred             CCceEcCCCCCcCCCCEEEeCCcCCCCCCcHHHHHHHHHHHHHHHhC
Q psy14461        359 KSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYG  405 (535)
Q Consensus       359 ~G~i~vd~~~~T~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g  405 (535)
                      ++.+.+++.++|+.|+||++||+. +++ ....|+.+|+.||+.|+.
T Consensus       323 ~~~~~~~~~~~t~~pglf~aGd~~-~g~-~~~~A~~~G~~aA~~i~~  367 (373)
T d1seza1         323 DSVLDAIDKMEKNLPGLFYAGNHR-GGL-SVGKALSSGCNAADLVIS  367 (373)
T ss_dssp             HHHHHHHHHHHHHSTTEEECCSSS-SCS-SHHHHHHHHHHHHHHHHH
T ss_pred             CcEeecccccCCCCCCEEEEecCC-Cch-hHHHHHHHHHHHHHHHHH
Confidence            123344556789999999999998 554 578899999999999974

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=98.91  E-value=1.6e-09  Score=102.52  Aligned_cols=160  Identities=18%  Similarity=0.156  Sum_probs=106.2

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCc---------------------------cC--------------
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLK---------------------------HF--------------  279 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~---------------------------~~--------------  279 (535)
                      ..|+|||+|+.|+-+|..|+++|.+|+|+++ +.+..                           .+              
T Consensus         5 ~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~G~k~~~sGgG~~n~~n~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   84 (253)
T d2gqfa1           5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNWDFI   84 (253)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHHHHH
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCceEecCCccccccCcccCchhhhccChHHHHHHhhhhcccchh
Confidence            4699999999999999999999999999998 64320                           00              


Q ss_pred             -----------------------cHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCC-cEEEEEecCCCCCceEEEcCEE
Q psy14461        280 -----------------------DQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDG-MKGVRGFHPESKEPFADVFKTV  334 (535)
Q Consensus       280 -----------------------~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~-~~~v~~~~~~~G~~~~~~~D~v  334 (535)
                                             ..++.+.+.+.+++.||++ ++++|++++..+++ .+.....  .+++  ++.+|.|
T Consensus        85 ~~~~~~g~~~~~~~~~~~~~~~~a~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~--~~~~--~~~a~~V  160 (253)
T d2gqfa1          85 SLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQ--VNST--QWQCKNL  160 (253)
T ss_dssp             HHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEE--ETTE--EEEESEE
T ss_pred             hhhhhcCcceeeecCCccccccchhHHHHHHHHHHHHcCCCeecCceEEEEEeecCCceeEEEEe--cCCE--EEEeCEE
Confidence                                   0234455666778889999 99999999875333 2222222  1555  7999999


Q ss_pred             EEccCCCCCCCCCC-------ccccCeeecC-----CCceE---cC-CCCCc-CCCCEEEeCCcCC--C--CCCcHHHHH
Q psy14461        335 VNAMEKKFDFAALN-------LHHIGVDIKK-----KSYVV---CN-EKDQT-SVGNIFAVGGIVH--G--KPNNASMAA  393 (535)
Q Consensus       335 i~a~G~~p~~~~l~-------l~~~gl~~~~-----~G~i~---vd-~~~~T-~~~~IyA~GD~~~--~--~~~~~~~A~  393 (535)
                      |+|+|-.+....-.       .+.+++.+-+     .|.+.   +| ..|+. .+||+|.+|-+.+  +  +-..-++|.
T Consensus       161 IiAtGG~S~p~~G~~g~g~~~a~~~~~~i~~~~~~~~ggv~~~~i~~~t~es~~~~gl~~~ge~ldv~g~~gg~n~~~a~  240 (253)
T d2gqfa1         161 IVATGGLSMPGLGATPFGYQIAEQFGIPVIPPRAVTMGGVDTKVISSKTMESNQVSGLYFIGEVLDVTGWLGGYNFQWAW  240 (253)
T ss_dssp             EECCCCSSCGGGTCCSHHHHHHHHTTCCEEEEEEEEEEEECGGGBCTTTCBBSSSTTEEECGGGBSCEECTTTHHHHHHH
T ss_pred             EEcCCcccccccCCCchHHHHHHhccccccccccccCCCCcccccCccchhhhcCCCcEEeeeEEEeeeecCCEehhhhH
Confidence            99999654322100       0122222210     12233   34 34655 6899999996653  2  122456899


Q ss_pred             HHHHHHHHHHhC
Q psy14461        394 ISARLIIERLYG  405 (535)
Q Consensus       394 ~~g~~aa~~i~g  405 (535)
                      ..|..|++.|..
T Consensus       241 ~s~~~~~~~~~~  252 (253)
T d2gqfa1         241 SSAYACALSISR  252 (253)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             hHHHHHHHHHhc
Confidence            999999999863

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=98.91  E-value=4.4e-10  Score=110.00  Aligned_cols=112  Identities=12%  Similarity=-0.032  Sum_probs=66.5

Q ss_pred             hhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCC--CC---CCcccc-Ceee--cCCCc
Q psy14461        291 LTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDF--AA---LNLHHI-GVDI--KKKSY  361 (535)
Q Consensus       291 l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~--~~---l~l~~~-gl~~--~~~G~  361 (535)
                      +++.|+++ ++++|++|+.+ ++++++.+.. .+++.+++++|.||+|++...-.  .+   +..... .+..  .+..+
T Consensus       245 ~~~~g~~i~~~~~V~~I~~~-~~~v~v~~~~-~~~~~~~~~aD~VI~A~p~~~l~~i~~~p~l~~~~~~ai~~~~~~~~~  322 (370)
T d2iida1         245 YRDIQDKVHFNAQVIKIQQN-DQKVTVVYET-LSKETPSVTADYVIVCTTSRAVRLIKFNPPLLPKKAHALRSVFTPYQF  322 (370)
T ss_dssp             HHHTGGGEESSCEEEEEEEC-SSCEEEEEEC-SSSCCCEEEESEEEECSCHHHHTTSEEESCCCHHHHHHHHHCCCTTHH
T ss_pred             HHhcCCccccCceEEEEEEe-CCeEEEEEEe-cCCCeEEEEeeEEEecCCHHHHhhCccCCCCCHHHHHHHHhcCCcccc
Confidence            35568899 99999999987 5667776653 24444589999999998632110  00   000000 0000  00000


Q ss_pred             eEcCCCCCcCCCCEEEeCCcCCCCCCcHHHHHHHHHHHHHHHh
Q psy14461        362 VVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLY  404 (535)
Q Consensus       362 i~vd~~~~T~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~  404 (535)
                      ...++.+.+...+||++||++......+..|+..|..||.+|-
T Consensus       323 ~~~~~~~~~~~g~v~~aGd~~~~~~~~~~~a~~sG~~aA~~i~  365 (370)
T d2iida1         323 QHFSDPLTASQGRIYFAGEYTAQAHGWIDSTIKSGLRAARDVN  365 (370)
T ss_dssp             HHHHHHHHCCBTTEEECSGGGSSSSSCHHHHHHHHHHHHHHHH
T ss_pred             cccchhhhcccCCEEEecccccCCCcccHHHHHHHHHHHHHHH
Confidence            1111223334567999999873333456789999999999873

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.90  E-value=3.3e-09  Score=100.83  Aligned_cols=150  Identities=12%  Similarity=-0.010  Sum_probs=96.0

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccc-------cccccccccccchhhccc---ccccccccccCHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRK-------KRRLYYPVAMSDLELEQD---STSALNVTIRNWN  158 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~-------~~l~~~~~~i~~~~~~~~---~~~~~~~~~~~~~  158 (535)
                      ++++|||+|++|+.+|+.....+.+|+++|+.+.+++..       ..+.............+.   ..........++.
T Consensus        43 yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~lGG~c~n~GcvP~k~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (261)
T d1mo9a1          43 YDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMTEKVVGIK  122 (261)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTSTTCCCCTTCCCCHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCccccccccccccchHHHHhhHHhHHHHHHhhhhccccccccccccHH
Confidence            678999999999999999999999999999988764321       011000000000000000   1112223456777


Q ss_pred             HHHHHHHHHHHHHHHH-HHHHHHhc-CcEEEEeEEEEecCCEEEEceeEEEcceEEEeeCceecC-CCCC-CceechhhH
Q psy14461        159 AATKLIKRFCIRAKND-SMRELKAL-GIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAVERRCLP-EPRN-SALISADDL  234 (535)
Q Consensus       159 ~l~~~~~~~~~~~~~~-~~~~~~~~-gV~~~~g~~~~~~~~~v~~~~~~~~~d~lViATGs~p~~-~i~G-~~v~~~~~~  234 (535)
                      ....+........... ........ .+.++.+.+.+.+++++.++++++++|+||||||++|.. ++++ +...+..+.
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~~~v~~~g~~i~ad~viiAtG~~P~~~~i~~~~~~~~l~~~  202 (261)
T d1mo9a1         123 EVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDNHTVEAAGKVFKAKNLILAVGAGPGTLDVPEQPRSAELAKI  202 (261)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEETTEEEETTEEEEBSCEEECCCEECCCCCSTCEECCHHHHHH
T ss_pred             HHHHHHHHHHHhhhhhHHHHhhhcccceeEeeeEEEEeeecccccccceEeeeeeeeccCCCCCcCcccccccccccccc
Confidence            7776665554443322 12223333 445567888899999999999999999999999999999 8888 444445555


Q ss_pred             Hhcc
Q psy14461        235 FRLG  238 (535)
Q Consensus       235 ~~~~  238 (535)
                      +.++
T Consensus       203 ~Gl~  206 (261)
T d1mo9a1         203 LGLD  206 (261)
T ss_dssp             HTCC
T ss_pred             eeee
Confidence            5443

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.89  E-value=8.9e-09  Score=86.63  Aligned_cols=94  Identities=14%  Similarity=0.111  Sum_probs=74.4

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCC-CcE-E
Q psy14461        240 WPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFD-GMK-G  315 (535)
Q Consensus       240 ~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~-~~~-~  315 (535)
                      ..|+|+|||||++|+|.|.+|++...+||+++| +.+-.  ++...+   +.+...+|++ +++++.+|.++.. +.+ .
T Consensus        33 rgk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~ra--~~~~~~---~l~~~~nI~v~~~~~v~~i~Gd~~~~~v~~  107 (130)
T d1vdca2          33 RNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRA--SKIMQQ---RALSNPKIDVIWNSSVVEAYGDGERDVLGG  107 (130)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCS--CHHHHH---HHHTCTTEEEECSEEEEEEEESSSSSSEEE
T ss_pred             CCCEEEEEcCchHHHHHHHHHhCCCCcEEEEEecccccc--chhhhh---ccccCCceEEEeccEEEEEEccCCcccEEE
Confidence            368999999999999999999999999999999 66543  343333   3345668999 9999999998632 223 4


Q ss_pred             EEEecCCCCCceEEEcCEEEEcc
Q psy14461        316 VRGFHPESKEPFADVFKTVVNAM  338 (535)
Q Consensus       316 v~~~~~~~G~~~~~~~D~vi~a~  338 (535)
                      +++++..+|++.++++|.+|+++
T Consensus       108 v~l~~~~tge~~~l~~dGvFVaI  130 (130)
T d1vdca2         108 LKVKNVVTGDVSDLKVSGLFFAI  130 (130)
T ss_dssp             EEEEETTTCCEEEEECSEEEECS
T ss_pred             EEEEECCCCCEEEEECCEEEEEC
Confidence            67776668888899999999985

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=98.81  E-value=2.9e-08  Score=97.11  Aligned_cols=159  Identities=17%  Similarity=0.145  Sum_probs=100.6

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc---------------------C------------------c--
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH---------------------F------------------D--  280 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~---------------------~------------------~--  280 (535)
                      .|+|||+|..|+-+|..|++.|.+|.|+++ +.....                     .                  +  
T Consensus        25 DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~~gG~s~~s~Ggi~~~~~~~~~~~~~~d~~~~~~~d~~~~~~~~~d~~  104 (322)
T d1d4ca2          25 DVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNINDPE  104 (322)
T ss_dssp             SEEEECSSHHHHHHHHHHHTTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSCHH
T ss_pred             eEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcccccCCcccccCchhhhhcccCCCHHHHHHHHHhccccccCHH
Confidence            699999999999999999999999999987 432100                     0                  0  


Q ss_pred             -----------------------------------------------HHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCC
Q psy14461        281 -----------------------------------------------QEMVRILLSSLTKAGVSI-QCCVIEKVISSFDG  312 (535)
Q Consensus       281 -----------------------------------------------~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~  312 (535)
                                                                     ..+.+.+.+.+.++|+++ +++.++++..++++
T Consensus       105 ~~~~~~~~~~~~i~~l~~~Gv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~gv~i~~~t~v~~li~d~~G  184 (322)
T d1d4ca2         105 LVKVLANNSSDSIDWLTSMGADMTDVGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGTDIRLNSRVVRILEDASG  184 (322)
T ss_dssp             HHHHHHHTHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCSHHHHHHHHHHHHHHTTCEEETTEEEEEEECCSSS
T ss_pred             HhhhhhhhhhhhhhhhhhhcccccccccccccccccccccccccchhHHHHHHHHHHHHhcCceEEEeeecccccccccc
Confidence                                                           112233444556789999 99999998775455


Q ss_pred             cEE-EEEecCCCCCceEEEcCEEEEccCCCCC-CC----------CC------------------------CccccCeee
Q psy14461        313 MKG-VRGFHPESKEPFADVFKTVVNAMEKKFD-FA----------AL------------------------NLHHIGVDI  356 (535)
Q Consensus       313 ~~~-v~~~~~~~G~~~~~~~D~vi~a~G~~p~-~~----------~l------------------------~l~~~gl~~  356 (535)
                      ++. |...+ .++....+.++.||+|+|--.. .+          .+                        +++..++.+
T Consensus       185 ~V~Gv~~~~-~~~~~~~i~Ak~VIlAtGG~~~n~~~~~~~~~~~~~~~~~~~~~~tGdg~~~a~~aGa~~~~~e~~~~~~  263 (322)
T d1d4ca2         185 KVTGVLVKG-EYTGYYVIKADAVVIAAGGFAKNNERVSKYDPKLKGFKATNHPGATGDGLDVALQAGAATRDLEMGGLVI  263 (322)
T ss_dssp             CCCEEEEEE-TTTEEEEEECSEEEECCCCCTTCHHHHHHHCGGGTTCCBCSCTTCSSHHHHHHHHTTBCEECTTCCEECC
T ss_pred             cccceEEEe-ecccEEEEeCCeEEEcCCCcccCHHHHHhhCcccccccccCCCCccCHHHHHHHHcCCcceecccceEEe
Confidence            543 44443 2445567999999999983211 00          00                        011112333


Q ss_pred             cCCCceEcCCCCCcCCCCEEEeCCcCCCC----CCcHH----HHHHHHHHHHHHHh
Q psy14461        357 KKKSYVVCNEKDQTSVGNIFAVGGIVHGK----PNNAS----MAAISARLIIERLY  404 (535)
Q Consensus       357 ~~~G~i~vd~~~~T~~~~IyA~GD~~~~~----~~~~~----~A~~~g~~aa~~i~  404 (535)
                      +..+.+. ++..+|.+|++||+|+|+ ++    ..+..    .+.--|++|+++++
T Consensus       264 ~~~~~~~-~~~~~~~v~Glya~Ge~~-~gvhG~nrlg~~~~~e~~v~g~~ag~~aa  317 (322)
T d1d4ca2         264 DTKAEVK-SEKTGKPITGLYAAGEVT-GGVHGANRLGGNAISDIVTYGRIAGASAA  317 (322)
T ss_dssp             CTTCEEE-BTTTSSEEEEEEECGGGB-CSSSTTSCCTTHHHHHHHHHHHHHHHHHH
T ss_pred             cCceEEE-ECCCCCEeCceEEchhhc-CCccccccchhhHHHHHHHHHHHHHHHHH
Confidence            3344332 344567899999999997 32    22332    34444777777764

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=98.78  E-value=7.5e-09  Score=92.11  Aligned_cols=123  Identities=15%  Similarity=0.101  Sum_probs=85.8

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCc-----------cCcHHHHHHHHHhhhcCCeEE-cceEEEE
Q psy14461        239 AWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLK-----------HFDQEMVRILLSSLTKAGVSI-QCCVIEK  305 (535)
Q Consensus       239 ~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~-----------~~~~~~~~~~~~~l~~~gV~i-~~~~v~~  305 (535)
                      ..+|+|+|||||+.|+++|..|+++|.+|+++++ +.+..           ....++.+.+.+.+++.||++ +++.|+.
T Consensus        41 ~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~GG~l~~~~~~p~~~~~~~~~~~~~~~~~~~gV~i~l~~~Vt~  120 (179)
T d1ps9a3          41 VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTVTA  120 (179)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCCCCS
T ss_pred             CCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCccCceEEEEEeCcccchHHHHHHHHHHhhhcCCeEEEeCCEEcc
Confidence            4579999999999999999999999999999999 65522           223567778888888899999 8876531


Q ss_pred             EEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeC--CcCC
Q psy14461        306 VISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVG--GIVH  383 (535)
Q Consensus       306 i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~G--D~~~  383 (535)
                                       +.   ...+|.|++|+|..|.....  .  +++   .|            .++-.+|  |.. 
T Consensus       121 -----------------~~---~~~~d~vilAtG~~~~~~~~--p--g~~---~g------------~~v~vigggd~a-  160 (179)
T d1ps9a3         121 -----------------DQ---LQAFDETILASGIPNRALAQ--P--LID---SG------------KTVHLIGGCDVA-  160 (179)
T ss_dssp             -----------------SS---SCCSSEEEECCCEECCTTHH--H--HHT---TT------------CCEEECGGGTCC-
T ss_pred             -----------------cc---cccceeEEEeecCCCccccc--c--hhc---cC------------CEEEEECCcHhh-
Confidence                             12   24689999999998765322  1  111   11            2344444  443 


Q ss_pred             CCCCcHHHHHHHHHHHHHH
Q psy14461        384 GKPNNASMAAISARLIIER  402 (535)
Q Consensus       384 ~~~~~~~~A~~~g~~aa~~  402 (535)
                       .......|..+|..++-.
T Consensus       161 -~~~~~~~Av~~G~~va~~  178 (179)
T d1ps9a3         161 -MELDARRAIAQGTRLALE  178 (179)
T ss_dssp             -SSCCHHHHHHHHHHHHHH
T ss_pred             -hhccchhhhhccCEEEEe
Confidence             222356788888777643

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=98.76  E-value=1.2e-09  Score=104.82  Aligned_cols=103  Identities=13%  Similarity=0.026  Sum_probs=65.7

Q ss_pred             CeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccC------e-eecCCCce---E
Q psy14461        295 GVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIG------V-DIKKKSYV---V  363 (535)
Q Consensus       295 gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~g------l-~~~~~G~i---~  363 (535)
                      |+++ ++++|++|+.+ +++++|++.+  +|+..++++|.||+|+|......++  +...      + .....|..   .
T Consensus       233 g~~i~~~~~V~~I~~~-~~~~~v~~~~--~~~~~~~~ad~VV~a~p~~~~~~Ll--~~~~~~~~~~~~~~~~~~~~~~~~  307 (347)
T d2ivda1         233 GDAAHVGARVEGLARE-DGGWRLIIEE--HGRRAELSVAQVVLAAPAHATAKLL--RPLDDALAALVAGIYNLGHLERVA  307 (347)
T ss_dssp             GGGEESSEEEEEEECC---CCEEEEEE--TTEEEEEECSEEEECSCHHHHHHHH--TTTCHHHHHHHHTCCBTTHHHHHH
T ss_pred             hcccccCCEEEEEEEe-CCeEEEEEEc--CCeEEEEECCEEEECCCHHHHHHhc--cCCCHHHHHHhhcceecCccccee
Confidence            7789 99999999876 4556666653  5666689999999999853221111  1100      0 00111211   1


Q ss_pred             cCCCCCcCCCCEEEeCCcCCCCCCcHHHHHHHHHHHHHHHh
Q psy14461        364 CNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLY  404 (535)
Q Consensus       364 vd~~~~T~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~  404 (535)
                      ..+...++.|++|++||.. ++. -...|+++|+.+|+.|+
T Consensus       308 ~~~~~~~~~p~~~~~G~~~-~g~-~~~~~~~~g~~~a~~~~  346 (347)
T d2ivda1         308 AIDAALQRLPGLHLIGNAY-KGV-GLNDCIRNAAQLADALV  346 (347)
T ss_dssp             HHHHHHHTSTTEEECSTTT-SCC-SHHHHHHHHHHHHHHHC
T ss_pred             cccccccCCCCEEEecccc-cCC-CHHHHHHHHHHHHHHhh
Confidence            1122346889999999998 544 46678999999999885

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.73  E-value=7.9e-08  Score=94.44  Aligned_cols=163  Identities=15%  Similarity=-0.012  Sum_probs=104.1

Q ss_pred             CcEEEECCChHHHHHHHHHHhCC--CcEEEEEc-CcCCc-----------------------------------------
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLG--VPVTLVYS-RRLLK-----------------------------------------  277 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g--~~Vtlv~~-~~~l~-----------------------------------------  277 (535)
                      |+|+|||||++|+-+|..|++.|  .+|+++++ +.+..                                         
T Consensus         5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iGG~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~y~   84 (335)
T d2gv8a1           5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPLYR   84 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCCCCT
T ss_pred             CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCCCcccccCCCCcccCCcccccccccccccccccccccccccch
Confidence            79999999999999999998876  59999999 65410                                         


Q ss_pred             -----------------------cC--cHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCc-eEEE
Q psy14461        278 -----------------------HF--DQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEP-FADV  330 (535)
Q Consensus       278 -----------------------~~--~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~-~~~~  330 (535)
                                             .+  .+++.+++....+..+..+ ++++|++|+.. +++..|++++...+++ ....
T Consensus        85 ~l~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~yl~~~~~~~~~~I~~~t~V~~v~~~-~~~w~Vt~~~~~~~~~~~~~~  163 (335)
T d2gv8a1          85 DLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKK-DGSWVVTYKGTKAGSPISKDI  163 (335)
T ss_dssp             TCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEE-TTEEEEEEEESSTTCCEEEEE
T ss_pred             hhhcCCcHhhhhhhhhcCCcccccCCchHHHHHHHHHHHHHhhhcccCceEEEEEEec-CCEEEEEEEecCCCCeEEEEE
Confidence                                   00  1356667777666667789 99999999987 6778888765444432 3457


Q ss_pred             cCEEEEccCCC--CCCCCCC------c---cccCeeecCCCceEcCCC---CCcCCCCEEEeCCcCCCCCCcHHHHHHHH
Q psy14461        331 FKTVVNAMEKK--FDFAALN------L---HHIGVDIKKKSYVVCNEK---DQTSVGNIFAVGGIVHGKPNNASMAAISA  396 (535)
Q Consensus       331 ~D~vi~a~G~~--p~~~~l~------l---~~~gl~~~~~G~i~vd~~---~~T~~~~IyA~GD~~~~~~~~~~~A~~~g  396 (535)
                      +|.||+|+|..  |+...+.      +   +.....+-.+|.-..+-+   +....|.+..+|=.. . .........|+
T Consensus       164 ~d~VI~AtG~~s~p~~~~~~~~~~p~~~~f~~~~~~~~~~~~~~~~ly~~~~~~~~p~l~f~G~~~-~-v~~~~~~e~Qa  241 (335)
T d2gv8a1         164 FDAVSICNGHYEVPYTGYLYSVPFPSLAKLKSPETKLIDDGSHVHNVYQHIFYIPDPTLAFVGLAL-H-VVPFPTSQAQA  241 (335)
T ss_dssp             ESEEEECCCSSSSBCCCBCCCCCCHHHHSCCSTTTCCCSSSSSCCSEETTTEETTCTTEEESSCCB-S-SCHHHHHHHHH
T ss_pred             eeEEEEcccccccceecccccCCCCcchhcccCccceeccccceeeeecccccCCCCceEEeeeEE-E-EecCCchHHHH
Confidence            99999999964  4443220      0   110111111111111111   123567888888444 2 22334567788


Q ss_pred             HHHHHHHhCCC
Q psy14461        397 RLIIERLYGMQ  407 (535)
Q Consensus       397 ~~aa~~i~g~~  407 (535)
                      ..+|+-+.|..
T Consensus       242 ~~~a~~~~g~~  252 (335)
T d2gv8a1         242 AFLARVWSGRL  252 (335)
T ss_dssp             HHHHHHHTTSS
T ss_pred             HHHHHHHcCCc
Confidence            88888877753

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.71  E-value=3e-08  Score=91.83  Aligned_cols=119  Identities=16%  Similarity=0.098  Sum_probs=80.9

Q ss_pred             CCCC---CceechhhHHhcc------------CCCCcEEEECCChHHHHHHHHHHhC--------------------C-C
Q psy14461        222 EPRN---SALISADDLFRLG------------AWPGKTLVLGGSLMAVEIAATLNFL--------------------G-V  265 (535)
Q Consensus       222 ~i~G---~~v~~~~~~~~~~------------~~~k~vvViGgG~~g~e~A~~l~~~--------------------g-~  265 (535)
                      +|||   ++++++.+++.+.            ..+++|+|||+|++|+++|..+.+.                    | .
T Consensus         5 ~IPGedl~gV~~A~dfl~~~N~~p~~~~~~~~~~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~   84 (225)
T d1cjca1           5 DIPGEELPGVFSARAFVGWYNGLPENRELAPDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVK   84 (225)
T ss_dssp             CCTTTTSTTEEEHHHHHHHHTTCGGGTTCCCCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCC
T ss_pred             CCCCCCCCCcEeHHHHHHHHhCCccccccCccccCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCC
Confidence            7999   7899999988531            1358999999999999999999883                    4 5


Q ss_pred             cEEEEEc-CcC-CccCcHHHHHH-----------------------------------HHHh--------------hhcC
Q psy14461        266 PVTLVYS-RRL-LKHFDQEMVRI-----------------------------------LLSS--------------LTKA  294 (535)
Q Consensus       266 ~Vtlv~~-~~~-l~~~~~~~~~~-----------------------------------~~~~--------------l~~~  294 (535)
                      +|+++.| ... ++...+++.+.                                   +.+.              -..+
T Consensus        85 ~V~iv~RRg~~~~~ft~~Elre~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (225)
T d1cjca1          85 TVWIVGRRGPLQVAFTIKELREMIQLPGTRPMLDPADFLGLQDRIKEAARPRKRLMELLLRTATEKPGVEEAARRASASR  164 (225)
T ss_dssp             EEEEECSSCGGGCCCCHHHHHHHHTCTTEEEECCGGGGTTHHHHTTTSCHHHHHHHHHHHHHHHSCCCHHHHHHHHTCSE
T ss_pred             eEEEEEEcChHhCCCCchhhhcccccCCCcceechhhhccchhhhhhhhhHHHHHHHHHHHHHHhccccccccccccccc
Confidence            8999988 322 22222232211                                   1111              1235


Q ss_pred             CeEE-cceEEEEEEEeCCC-cEE-EEEecC------------CCCCceEEEcCEEEEccCC
Q psy14461        295 GVSI-QCCVIEKVISSFDG-MKG-VRGFHP------------ESKEPFADVFKTVVNAMEK  340 (535)
Q Consensus       295 gV~i-~~~~v~~i~~~~~~-~~~-v~~~~~------------~~G~~~~~~~D~vi~a~G~  340 (535)
                      ++.+ +...+.++..++++ +++ +++..+            .+|+..+++||+||.|+|+
T Consensus       165 ~i~~~f~~~p~~i~~~~~g~~v~~v~~~~~~~~~~~~~~~~~~tg~~~~ipadlVi~AiGf  225 (225)
T d1cjca1         165 AWGLRFFRSPQQVLPSPDGRRAAGIRLAVTRLEGIGEATRAVPTGDVEDLPCGLVLSSIGY  225 (225)
T ss_dssp             EEEEECSEEEEEEEECTTSSSEEEEEEEEEEEESSGGGCEEEEEEEEEEEECSEEEECCCE
T ss_pred             ceEEEeecccccccccCCCCeEEEEEEEEeEECCCCCCCcccCCCcEEEEECCEEEECCCC
Confidence            6899 99999999886433 332 333211            1366678999999999995

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.64  E-value=1.1e-09  Score=102.11  Aligned_cols=138  Identities=8%  Similarity=-0.113  Sum_probs=82.8

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCC-------CeEEEEecCCcccccc-ccc-ccccccccchhhcccccccccccccCHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQ-------RRDELQERGSHLSFRK-KRR-LYYPVAMSDLELEQDSTSALNVTIRNWNA  159 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~-------~~V~lie~~~~~~~~~-~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  159 (535)
                      ++|+|||+||+|++||..+...+       .+|+|||+.+.+++.. .+. |++.                     .+..
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~~~gi~p~~~---------------------~~~~   61 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHP---------------------KIKS   61 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSCTTCT---------------------GGGG
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCeeeeccCcccc---------------------cchh
Confidence            68999999999999997665544       5899999999775432 111 2210                     0111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEceeEEEcceEEEeeCceecC-CCCC---CceechhhHH
Q psy14461        160 ATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAVERRCLP-EPRN---SALISADDLF  235 (535)
Q Consensus       160 l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~~~~~~d~lViATGs~p~~-~i~G---~~v~~~~~~~  235 (535)
                      +..+           ....+...|+++..+..   -...+...+....||++++|||+++.. .++|   ...+...+.+
T Consensus        62 ~~~~-----------~~~~~~~~g~~~~~~~~---v~~~~~~~~~~~~~~~v~~atGa~~~~~~~~g~~~~~~~~~~~~~  127 (239)
T d1lqta2          62 ISKQ-----------FEKTAEDPRFRFFGNVV---VGEHVQPGELSERYDAVIYAVGAQSRGVPTPGLPFDDQSGTIPNV  127 (239)
T ss_dssp             GHHH-----------HHHHHTSTTEEEEESCC---BTTTBCHHHHHHHSSEEEECCCCCEECCCCTTSCCBTTTTBCCEE
T ss_pred             hhhh-----------hhhhhccCCceEEEEEE---eccccchhhhhccccceeeecCCCccccccccccccccccchhhh
Confidence            1111           12456677999887752   122222233335799999999998776 6665   1111111100


Q ss_pred             h----c---------cCCCCcEEEECCChHHHHHHHHHH
Q psy14461        236 R----L---------GAWPGKTLVLGGSLMAVEIAATLN  261 (535)
Q Consensus       236 ~----~---------~~~~k~vvViGgG~~g~e~A~~l~  261 (535)
                      .    .         ....++++|+|+|+.++++|..+.
T Consensus       128 ~~~~~~~~~~~~~~~~~~g~~~vv~g~g~~a~d~a~~~v  166 (239)
T d1lqta2         128 GGRINGSPNEYVVGWIKRGPTGVIGTNKKDAQDTVDTLI  166 (239)
T ss_dssp             TTEETTCSSEEECTHHHHCSCSCTTHHHHHHHHHHHHHH
T ss_pred             hhhhccccccccceeecCCCEEEEeCCCchHHHHHHHHH
Confidence            0    0         012467888889999999987653

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.63  E-value=1.1e-08  Score=95.81  Aligned_cols=105  Identities=17%  Similarity=0.045  Sum_probs=67.5

Q ss_pred             CeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCC-----Ccccc-CeeecCCCceEcC--
Q psy14461        295 GVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAAL-----NLHHI-GVDIKKKSYVVCN--  365 (535)
Q Consensus       295 gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l-----~l~~~-gl~~~~~G~i~vd--  365 (535)
                      +..+ .++.+..+... ++.+.|++   .+|+  .+++|.++.++........+     .+... ...++..++..++  
T Consensus       224 ~~~i~~~~~v~~i~~~-~~~v~v~~---~~g~--~~~~d~~~~~~~~~~l~~~~~~~~p~l~~~~~~ai~~~~~~~~~~~  297 (347)
T d1b5qa1         224 DPRLQLNKVVREIKYS-PGGVTVKT---EDNS--VYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFWPVGVNRY  297 (347)
T ss_dssp             CTTEESSCCEEEEEEC-SSCEEEEE---TTSC--EEEESEEEECSCHHHHHTTSSEEESCCCHHHHHHHHHSCBTTCCHH
T ss_pred             cccccccccccccccc-CccEEEEE---CCCC--EEEcCEEEeecCHHHHhhcccccCCCCCHHHHHHHHhcCCcccccc
Confidence            4467 77888888876 46677777   4787  89999999987642211110     00000 0001222333333  


Q ss_pred             --CCCCcCCCCEEEeCCcCC-CCCCcHHHHHHHHHHHHHHHhC
Q psy14461        366 --EKDQTSVGNIFAVGGIVH-GKPNNASMAAISARLIIERLYG  405 (535)
Q Consensus       366 --~~~~T~~~~IyA~GD~~~-~~~~~~~~A~~~g~~aa~~i~g  405 (535)
                        +.++++.++||++||+++ ..|..++.|+.+|+.||+.|++
T Consensus       298 ~~~~~~~~~~~v~~~GD~~~~~~~~~~~gA~~sG~~aA~~l~~  340 (347)
T d1b5qa1         298 EYDQLRAPVGRVYFTGEHTSEHYNGYVHGAYLSGIDSAEILIN  340 (347)
T ss_dssp             HHHHHHCCBTTEEECSGGGCSSCTTSHHHHHHHHHHHHHHHHH
T ss_pred             chhhcccccCCEEEEEccccCcCCCHHHHHHHHHHHHHHHHHH
Confidence              235688899999999983 2366788899999999999875

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.62  E-value=3e-08  Score=89.82  Aligned_cols=106  Identities=10%  Similarity=0.125  Sum_probs=73.0

Q ss_pred             EEEEeeCCccHHHHHHH--HHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHH
Q psy14461         89 LYLDRIGDEGILLEEEL--KRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKR  166 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al--~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  166 (535)
                      ++|+|||+|.+|+.+|.  ++...+.+|+++|++++++|.+++++++   +.+....             .+.+      
T Consensus         1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~~~~~~~~~~~---l~~~~~~-------------~~~~------   58 (198)
T d1nhpa1           1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLY---LEGKVKD-------------VNSV------   58 (198)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCGGGHHHH---HTTSSCC-------------GGGS------
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcccccccCcchh---hcccccc-------------hHHH------
Confidence            47899999999998875  4455678999999999988888887765   3432110             1000      


Q ss_pred             HHHHHHHHHHHHHHhcCcEEEEeE-EEEe--cCCEEEEce------eEEEcceEEEeeCceecC
Q psy14461        167 FCIRAKNDSMRELKALGIDIVRTA-AAFT--NPHTIKLSN------RSVTGFNFLLAVERRCLP  221 (535)
Q Consensus       167 ~~~~~~~~~~~~~~~~gV~~~~g~-~~~~--~~~~v~~~~------~~~~~d~lViATGs~p~~  221 (535)
                           .....+.+++.||+++.+. +..+  +.+.+++.+      ..+.||.+|+|+|+.|..
T Consensus        59 -----~~~~~~~l~~~gi~v~~~~~V~~i~~~~~~v~~~~~~~g~~~~~~~D~li~a~G~~~~~  117 (198)
T d1nhpa1          59 -----RYMTGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFE  117 (198)
T ss_dssp             -----BSCCHHHHHHTTCEEEETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECC
T ss_pred             -----HHhhHHHHHHCCcEEEEeeceeeEeeccccceeeecccccccccccceeeEeecceeec
Confidence                 0111245677899998775 4333  356676642      468999999999998864

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=98.59  E-value=5.1e-07  Score=88.21  Aligned_cols=113  Identities=18%  Similarity=0.110  Sum_probs=74.1

Q ss_pred             hhcCCeEE-cceEEEEEEEeCCCcE-EEEEecCCCCCceEEEcCEEEEccCCCCCCCCC-----Cc--------cccC-e
Q psy14461        291 LTKAGVSI-QCCVIEKVISSFDGMK-GVRGFHPESKEPFADVFKTVVNAMEKKFDFAAL-----NL--------HHIG-V  354 (535)
Q Consensus       291 l~~~gV~i-~~~~v~~i~~~~~~~~-~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l-----~l--------~~~g-l  354 (535)
                      .++.|+++ .++.+.++..+ ++++ .+...+..+|+...+.++.||+|||--......     ..        ...| .
T Consensus       168 ~~~~gv~i~~~~~~~~li~~-~~~v~g~~~~~~~~g~~~~i~Ak~VvlATGG~~~~~~~t~~~~~~tGdg~~~~~~~G~~  246 (336)
T d2bs2a2         168 CLKLGVSIQDRKEAIALIHQ-DGKCYGAVVRDLVTGDIIAYVAKGTLIATGGYGRIYKNTTNAVVCEGTGTAIALETGIA  246 (336)
T ss_dssp             HHHHTCEEECSEEEEEEEEE-TTEEEEEEEEETTTCCEEEEECSEEEECCCCCGGGSSSBSSCTTCSCHHHHHHHTTSSS
T ss_pred             HHhccccccceeeeeecccc-cccccceeEEeccCCcEEEEecCeEEEeccccccccccccccccccchhhhhhhhhhhh
Confidence            34568999 99999888776 4554 344544468887889999999999844211100     00        1123 2


Q ss_pred             eecCCCceEcCCCCCcCCCCEEEeCCcCC----CCCC----cHHHHHHHHHHHHHHHh
Q psy14461        355 DIKKKSYVVCNEKDQTSVGNIFAVGGIVH----GKPN----NASMAAISARLIIERLY  404 (535)
Q Consensus       355 ~~~~~G~i~vd~~~~T~~~~IyA~GD~~~----~~~~----~~~~A~~~g~~aa~~i~  404 (535)
                      ++.+-++|.+|+..+|+.|++|++||+..    +...    +...+...+..+++.+.
T Consensus       247 ~l~~~~~iq~~~~~~t~~~gl~a~G~~~~~~~~~~~~~~~~~~~e~~~~~~~~ge~~~  304 (336)
T d2bs2a2         247 QLGNMGGIRTDYRGEAKLKGLFSAGEAACWDMHGFNRLGGNSVSEAVVAGMIVGEYFA  304 (336)
T ss_dssp             CEECCCEEECCTTSBCSSBTEEECGGGEECCSSTTCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred             hhccccceeechhhcccCCcceeccccccccccccccchhhccchhhhhcchhHHHHH
Confidence            35557889999999999999999999853    1111    23445556666666554

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=98.58  E-value=2.4e-07  Score=76.80  Aligned_cols=89  Identities=16%  Similarity=0.041  Sum_probs=65.7

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRFC  168 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  168 (535)
                      .+++|||+|..|+..|-.....+.+|+|+|+.+.+      ++..   +                  +            
T Consensus        31 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~------l~~~---~------------------~------------   71 (121)
T d1d7ya2          31 SRLLIVGGGVIGLELAATARTAGVHVSLVETQPRL------MSRA---A------------------P------------   71 (121)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST------TTTT---S------------------C------------
T ss_pred             CeEEEECcchhHHHHHHHhhcccceEEEEeecccc------cccc---C------------------C------------
Confidence            35799999999999988777889999999999864      1111   1                  1            


Q ss_pred             HHHHHHHHHHHHhcCcEEEEeE-EEEecCCEEEEce-eEEEcceEEEeeC
Q psy14461        169 IRAKNDSMRELKALGIDIVRTA-AAFTNPHTIKLSN-RSVTGFNFLLAVE  216 (535)
Q Consensus       169 ~~~~~~~~~~~~~~gV~~~~g~-~~~~~~~~v~~~~-~~~~~d~lViATG  216 (535)
                      ..+...+.+.+++.||+++.++ +.......+.+++ .++.+|.||+|+|
T Consensus        72 ~~~~~~~~~~l~~~GV~i~~~~~v~~~~~~~v~l~dg~~i~~D~vi~a~G  121 (121)
T d1d7ya2          72 ATLADFVARYHAAQGVDLRFERSVTGSVDGVVLLDDGTRIAADMVVVGIG  121 (121)
T ss_dssp             HHHHHHHHHHHHTTTCEEEESCCEEEEETTEEEETTSCEEECSEEEECSC
T ss_pred             HHHHHHHHHHHHHCCcEEEeCCEEEEEeCCEEEECCCCEEECCEEEEeeC
Confidence            1112223467888999999876 4445566777765 8899999999998

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=98.52  E-value=8e-07  Score=85.74  Aligned_cols=97  Identities=15%  Similarity=0.098  Sum_probs=69.6

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc-----------C----------------------------cHH
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH-----------F----------------------------DQE  282 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~-----------~----------------------------~~~  282 (535)
                      .|+|||+|..|+-+|..|++.|.+|+|+++ +.....           .                            +++
T Consensus        18 DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~~gG~s~~s~G~~~~~~~~~~~~~~~~d~~~~~~~d~~~~~~~~~d~~   97 (308)
T d1y0pa2          18 DVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNINDPA   97 (308)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSCHH
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcceecCCCCccccchhhhhhhccchHHHHHHHHHhhhhhccchH
Confidence            699999999999999999999999999987 432100           0                            011


Q ss_pred             -------------------------------------------------HHHHHHHhhhcCCeEE-cceEEEEEEEeCCC
Q psy14461        283 -------------------------------------------------MVRILLSSLTKAGVSI-QCCVIEKVISSFDG  312 (535)
Q Consensus       283 -------------------------------------------------~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~  312 (535)
                                                                       +...+.+.+.+.|+++ .++.++++..++++
T Consensus        98 lv~~~~~~~~~~i~~L~~~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~gv~i~~~~~v~~li~~~~G  177 (308)
T d1y0pa2          98 LVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKG  177 (308)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEECTTS
T ss_pred             HHHHHHHhhhHHHHHHHHcCCCccccccccccccccccccccccchHHHHHHHHHHHHHhccceEEEeeccchhhhhccc
Confidence                                                             1122334455689999 99999998776455


Q ss_pred             cEE-EEEecCCCCCceEEEcCEEEEccCC
Q psy14461        313 MKG-VRGFHPESKEPFADVFKTVVNAMEK  340 (535)
Q Consensus       313 ~~~-v~~~~~~~G~~~~~~~D~vi~a~G~  340 (535)
                      ++. |...+ .++.+.++.++.||+|+|-
T Consensus       178 ~V~Gv~~~~-~~~~~~~i~Ak~VVlAtGG  205 (308)
T d1y0pa2         178 TVKGILVKG-MYKGYYWVKADAVILATGG  205 (308)
T ss_dssp             CEEEEEEEE-TTTEEEEEECSEEEECCCC
T ss_pred             ccccccccc-cccceeEeecCeEEEccCc
Confidence            653 55543 2455568999999999983

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=98.49  E-value=3.8e-07  Score=87.95  Aligned_cols=153  Identities=15%  Similarity=0.091  Sum_probs=102.0

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc---------------------C----------------cHHHH
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH---------------------F----------------DQEMV  284 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~---------------------~----------------~~~~~  284 (535)
                      +|+|||+|++|+-+|..|++.|.+|+++++ +.+...                     .                .+++.
T Consensus         9 dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGGtW~~n~ypg~~~d~~~~~~~~s~~~~~~~~~~~~~~~p~~~e~~   88 (298)
T d1w4xa1           9 DVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPEIL   88 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHHHHH
T ss_pred             CEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCcccccccCCCCCceeccccccccccccccccCCCCCccccCccchHH
Confidence            699999999999999999999999999998 543110                     0                14677


Q ss_pred             HHHHHhhhcCCe--EE-cceEEEEEEEeCC-CcEEEEEecCCCCCceEEEcCEEEEccCCC--CCCCCCCccccCeee-c
Q psy14461        285 RILLSSLTKAGV--SI-QCCVIEKVISSFD-GMKGVRGFHPESKEPFADVFKTVVNAMEKK--FDFAALNLHHIGVDI-K  357 (535)
Q Consensus       285 ~~~~~~l~~~gV--~i-~~~~v~~i~~~~~-~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~--p~~~~l~l~~~gl~~-~  357 (535)
                      +++++..++.++  .+ ++++|+++..+++ +..+|++.   +++  +..+|.+|+|+|..  |....+    .+++. .
T Consensus        89 ~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~---~~~--~~~~~~~i~atG~ls~~~~p~~----~~~~i~g  159 (298)
T d1w4xa1          89 RYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTN---HGD--RIRARYLIMASGQLSDALTGAL----FKIDIRG  159 (298)
T ss_dssp             HHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEET---TCC--EEEEEEEEECCCSCCCCTTHHH----HTSEEEC
T ss_pred             HHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeeccc---ccc--ccccceEEEeecccccccCCcc----ccccccc
Confidence            788888888888  58 9999999985433 45678874   666  78999999999964  333221    12332 2


Q ss_pred             CCCceEcC---CC------CCc-CCCCEEEeCCcCCC--CCCcHHHHHHHHHHHHHHHh
Q psy14461        358 KKSYVVCN---EK------DQT-SVGNIFAVGGIVHG--KPNNASMAAISARLIIERLY  404 (535)
Q Consensus       358 ~~G~i~vd---~~------~~T-~~~~IyA~GD~~~~--~~~~~~~A~~~g~~aa~~i~  404 (535)
                      .+|.-.-+   +.      +.+ +.||.|.++--.++  .......+..|++.+++.|.
T Consensus       160 ~~g~~l~~~W~~~p~ty~G~~v~gfPN~f~~~Gp~s~~~~~~~~~~~e~q~~~i~~~i~  218 (298)
T d1w4xa1         160 VGNVALKEKWAAGPRTYLGLSTAGFPNLFFIAGPGSPSALSNMLVSIEQHVEWVTDHIA  218 (298)
T ss_dssp             GGGCBHHHHTTTSCCCBTTTBCTTSTTEEESSCTTSSGGGSCHHHHHHHHHHHHHHHHH
T ss_pred             CCCeeehhhchhhHHHHHHHhcCCCCeEEEecCCCCccccccHHHHHHHHHHHHHHHHH
Confidence            22211111   11      122 67999998543311  12344567777888887764

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=98.46  E-value=2.7e-07  Score=86.77  Aligned_cols=37  Identities=11%  Similarity=-0.060  Sum_probs=33.4

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccc
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLS  124 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~  124 (535)
                      ..||+|||+|++|+.+|+.+...+.+|+|+||++.++
T Consensus         4 ~~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~G   40 (253)
T d2gqfa1           4 YSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIG   40 (253)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence            4689999999999999999999999999999998653

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=1.3e-08  Score=93.56  Aligned_cols=129  Identities=9%  Similarity=0.006  Sum_probs=76.9

Q ss_pred             EEEEEeeCCccHHHHHHH--HHhhCCCeEEEEecCCccccccccccccccccc--chhhc--ccccccc-cccccCHHHH
Q psy14461         88 VLYLDRIGDEGILLEEEL--KRQTNQRRDELQERGSHLSFRKKRRLYYPVAMS--DLELE--QDSTSAL-NVTIRNWNAA  160 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al--~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~--~~~~~--~~~~~~~-~~~~~~~~~l  160 (535)
                      .++++|||+|++|+.+|.  ++.....+|++|+++++++|.+..++.......  .....  +...... ........+.
T Consensus         4 ~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~py~r~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (213)
T d1m6ia1           4 HVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPSF   83 (213)
T ss_dssp             EEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSCGGG
T ss_pred             CCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCCCccccccceecccccCchhhhhhhhhhcccchhhhhcCChhh
Confidence            467899999999998875  455566789999999999888776654411100  00000  0000000 0000000000


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCcEEEEeE-EEEe--cCCEEEEce-eEEEcceEEEeeCceecC-CCCC
Q psy14461        161 TKLIKRFCIRAKNDSMRELKALGIDIVRTA-AAFT--NPHTIKLSN-RSVTGFNFLLAVERRCLP-EPRN  225 (535)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~-~~~~--~~~~v~~~~-~~~~~d~lViATGs~p~~-~i~G  225 (535)
                      .         ........+++.||+++.++ ++.+  +.++|++++ .++.||+||+|||+.|.. ++++
T Consensus        84 ~---------~~~~~~~~~~~~gI~~~~g~~V~~id~~~~~V~l~dG~~i~~d~lViAtG~~~~~~~l~~  144 (213)
T d1m6ia1          84 Y---------VSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTEPNVELAK  144 (213)
T ss_dssp             S---------BCTTTTTTSTTCEEEEEETCCEEEEEGGGTEEEETTSCEEEEEEEEECCCEEEECCTTHH
T ss_pred             h---------hhhhhHHHHHHCCeEEEeCCEEEEeeccCceeeeccceeeccceEEEeeeeecchhhhhh
Confidence            0         00001133566799999885 5444  466888865 789999999999998877 6655

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.46  E-value=4.1e-08  Score=86.13  Aligned_cols=144  Identities=15%  Similarity=0.122  Sum_probs=83.9

Q ss_pred             EEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHHHH
Q psy14461         90 YLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRFCI  169 (535)
Q Consensus        90 ~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  169 (535)
                      +|+|||+|++|+..|.... .+.+|||+++++...+.+..++.+   +.+..              ....          
T Consensus         2 rVvIIGgG~~G~e~A~~l~-~~~~Vtvv~~~~~~~~~~~~~~~~---~~~~~--------------~~~~----------   53 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLS-QTYEVTVIDKEPVPYYSKPMLSHY---IAGFI--------------PRNR----------   53 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHT-TTSEEEEECSSSSCCCCSTTHHHH---HTTSS--------------CGGG----------
T ss_pred             eEEEECCcHHHHHHHHHHH-cCCCEEEEeccccccccccchhhh---hhhhh--------------hhhh----------
Confidence            5899999999999887654 467999999988766554433322   11110              0000          


Q ss_pred             HHHHHHHHHHHhcCcEEEEeE-EEEec--CCEEEEceeEEEcceEEEeeCceecC--CCCC----Cceechh-------h
Q psy14461        170 RAKNDSMRELKALGIDIVRTA-AAFTN--PHTIKLSNRSVTGFNFLLAVERRCLP--EPRN----SALISAD-------D  233 (535)
Q Consensus       170 ~~~~~~~~~~~~~gV~~~~g~-~~~~~--~~~v~~~~~~~~~d~lViATGs~p~~--~i~G----~~v~~~~-------~  233 (535)
                       +.......++..+++++.++ +..++  .+.+..++.++.||.+|+|+|..|..  .-.|    ..+...+       +
T Consensus        54 -~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~~~i~~D~li~a~G~~~~~~~~~~gl~~~~~i~v~~~~~t~~~~  132 (167)
T d1xhca1          54 -LFPYSLDWYRKRGIEIRLAEEAKLIDRGRKVVITEKGEVPYDTLVLATGAPNVDLARRSGIHTGRGILIDDNFRTSAKD  132 (167)
T ss_dssp             -GCSSCHHHHHHHTEEEECSCCEEEEETTTTEEEESSCEEECSEEEECCCEECCHHHHHTTCCBSSSEECCTTSBCSSTT
T ss_pred             -hhHHHHHHHHhccceeeeeccccccccccccccccccccccceeEEEEEecCCchhhhcCceeCCceeeccccEecCCC
Confidence             00111244566789988764 33333  34455556789999999999987753  1112    1222111       1


Q ss_pred             HHhccCC-CCcEEEECCChHHHHHHHHHHh
Q psy14461        234 LFRLGAW-PGKTLVLGGSLMAVEIAATLNF  262 (535)
Q Consensus       234 ~~~~~~~-~k~vvViGgG~~g~e~A~~l~~  262 (535)
                      ++...+. ..+.+++|++..|++.|..+++
T Consensus       133 i~aiGD~~~~~~~~~~~~~~a~~~a~~~a~  162 (167)
T d1xhca1         133 VYAIGDCAEYSGIIAGTAKAAMEQARVLAD  162 (167)
T ss_dssp             EEECGGGEEBTTBCCCSHHHHHHHHHHHHH
T ss_pred             eEEeeecccCCCeEEChHHHHHHHHHHHHH
Confidence            1111110 1123467888999999888765

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.45  E-value=5.9e-07  Score=74.48  Aligned_cols=87  Identities=16%  Similarity=0.017  Sum_probs=65.9

Q ss_pred             EEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHHHH
Q psy14461         90 YLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRFCI  169 (535)
Q Consensus        90 ~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  169 (535)
                      +++|+|+|+.|+..|......+.+|+|+|+.+.+.      + +                      +.            
T Consensus        34 ~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l~------~-~----------------------d~------------   72 (122)
T d1xhca2          34 EAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFL------G-L----------------------DE------------   72 (122)
T ss_dssp             EEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCT------T-C----------------------CH------------
T ss_pred             cEEEECCcHHHHHHHHHhhcccceEEEEecccccc------C-C----------------------CH------------
Confidence            56999999999999988888899999999987541      1 1                      10            


Q ss_pred             HHHHHHHHHHHhcCcEEEEeE-EEEecCCEEEEceeEEEcceEEEeeCc
Q psy14461        170 RAKNDSMRELKALGIDIVRTA-AAFTNPHTIKLSNRSVTGFNFLLAVER  217 (535)
Q Consensus       170 ~~~~~~~~~~~~~gV~~~~g~-~~~~~~~~v~~~~~~~~~d~lViATGs  217 (535)
                      ++...+.+.+++.||+++.++ +...+.+.+..++..+.+|.+|+|||.
T Consensus        73 ~~~~~~~~~l~~~GV~~~~~~~v~~~~~~~v~~~~~~i~~D~vi~a~Gv  121 (122)
T d1xhca2          73 ELSNMIKDMLEETGVKFFLNSELLEANEEGVLTNSGFIEGKVKICAIGI  121 (122)
T ss_dssp             HHHHHHHHHHHHTTEEEECSCCEEEECSSEEEETTEEEECSCEEEECCE
T ss_pred             HHHHHHHHHHHHCCcEEEeCCEEEEEeCCEEEeCCCEEECCEEEEEEEe
Confidence            111223466788899999875 445666677667789999999999995

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.45  E-value=2.9e-06  Score=78.12  Aligned_cols=135  Identities=13%  Similarity=0.041  Sum_probs=90.1

Q ss_pred             eEEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccccc--c-cccc----cccccchhhccccc-ccccccccCHH
Q psy14461         87 AVLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKK--R-RLYY----PVAMSDLELEQDST-SALNVTIRNWN  158 (535)
Q Consensus        87 ~~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~--~-l~~~----~~~i~~~~~~~~~~-~~~~~~~~~~~  158 (535)
                      .-+|++|||+||+|+.+|+++...+.+|+|||+.+.+++...  + +|..    ...+.......... .......+.+.
T Consensus         5 ~dyDviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~~GG~~~~~g~~~~~~~~~~a~~~~~~~~~~~~G~~~~~~~~~~~   84 (229)
T d1ojta1           5 AEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVRHLAANGIKYPEPELDID   84 (229)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCCHH
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCCCCCeeeccccchhhhhhhhhhhHHhhhhHhhcCCcccCCcccHH
Confidence            358999999999999999999999999999999876543210  0 1100    00000000000000 11224567888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEc---------------eeEEEcceEEEeeCceecC
Q psy14461        159 AATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLS---------------NRSVTGFNFLLAVERRCLP  221 (535)
Q Consensus       159 ~l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~---------------~~~~~~d~lViATGs~p~~  221 (535)
                      .+..+++.....+...+........++++.+...+.++......               .....++.++++.|.++..
T Consensus        85 ~~~~~~~~~~~~l~~~~~~~~~~~~v~vi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  162 (229)
T d1ojta1          85 MLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQFLDPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRAPN  162 (229)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTEEEEEEEEEEETTEEEEEEEEEEEEEEEEEECCCEEEEC
T ss_pred             HHHHHHHHHHHHHhcchHhHhhcCceEEEEeeeeecCCcccccccccccccccccccccccceecceEEEEecccCCc
Confidence            88888888888888888888888999999998877655433221               1457788999999987543

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.45  E-value=3.4e-07  Score=84.02  Aligned_cols=51  Identities=22%  Similarity=0.229  Sum_probs=41.9

Q ss_pred             CCCC---CceechhhHHhcc------------CCCCcEEEECCChHHHHHHHHHH--------------------hCCC-
Q psy14461        222 EPRN---SALISADDLFRLG------------AWPGKTLVLGGSLMAVEIAATLN--------------------FLGV-  265 (535)
Q Consensus       222 ~i~G---~~v~~~~~~~~~~------------~~~k~vvViGgG~~g~e~A~~l~--------------------~~g~-  265 (535)
                      +|||   ++++++.+++.+-            ..+++|+|||+|++|+++|..|.                    +.|. 
T Consensus         5 ~IPGedl~gV~~A~dfl~~~N~~p~~~~~~~~~~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~   84 (216)
T d1lqta1           5 NIPGEDLPGSIAAVDFVGWYNAHPHFEQVSPDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQ   84 (216)
T ss_dssp             CCTTTTSTTEEEHHHHHHHHTTCGGGTTCCCCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCC
T ss_pred             CCCCCCCCCcEeHHHHHHHHhCCccccccCccccCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCc
Confidence            7999   7899999988531            23689999999999999999887                    4554 


Q ss_pred             cEEEEEc
Q psy14461        266 PVTLVYS  272 (535)
Q Consensus       266 ~Vtlv~~  272 (535)
                      +|+++.|
T Consensus        85 ~V~iv~R   91 (216)
T d1lqta1          85 EVVIVGR   91 (216)
T ss_dssp             EEEEECS
T ss_pred             eEEEEEE
Confidence            7999987

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=98.42  E-value=2.1e-06  Score=83.32  Aligned_cols=97  Identities=18%  Similarity=0.090  Sum_probs=71.2

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc----------------------C-----------------c--
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH----------------------F-----------------D--  280 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~----------------------~-----------------~--  280 (535)
                      .|+|||+|.+|+-+|..+++.|.+|.|+++ +..-..                      .                 +  
T Consensus        21 DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~~~gG~S~~a~Ggi~a~~~~~~~~~g~~d~~~~~~~d~~~~~~~~~d~~  100 (317)
T d1qo8a2          21 QVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQNDIK  100 (317)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSCHH
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcCCCcccccchhhhhcccCCcHHHHHHHHHHhhccccchh
Confidence            599999999999999999999999999987 422000                      0                 0  


Q ss_pred             -----------------------------------------------HHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCC
Q psy14461        281 -----------------------------------------------QEMVRILLSSLTKAGVSI-QCCVIEKVISSFDG  312 (535)
Q Consensus       281 -----------------------------------------------~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~  312 (535)
                                                                     ..+...+.+.+++.|+++ .++.++++..++++
T Consensus       101 lv~~~~~~a~~~i~~l~~~Gv~~~~~~~~gg~~~~r~~~~~~g~~~g~~i~~~L~~~~~~~g~~i~~~~~v~~l~~~~~g  180 (317)
T d1qo8a2         101 LVTILAEQSADGVQWLESLGANLDDLKRSGGARVDRTHRPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDH  180 (317)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEECSSSSCHHHHHHHHHHHHHHHTTCCEECSEEEEEEEECTTS
T ss_pred             HHHHHHhhhhhhhhhHHHhhhcccccccccCcccccccccccccccchhhhHHHHHHhhhccceeeeccchhheeecccc
Confidence                                                           123334455567789999 99999998665456


Q ss_pred             cEE-EEEecCCCCCceEEEcCEEEEccCC
Q psy14461        313 MKG-VRGFHPESKEPFADVFKTVVNAMEK  340 (535)
Q Consensus       313 ~~~-v~~~~~~~G~~~~~~~D~vi~a~G~  340 (535)
                      ++. |.... .+++...+.++.||+|+|-
T Consensus       181 ~V~Gv~~~~-~~~~~~~i~Ak~VVlAtGG  208 (317)
T d1qo8a2         181 SVVGAVVHG-KHTGYYMIGAKSVVLATGG  208 (317)
T ss_dssp             BEEEEEEEE-TTTEEEEEEEEEEEECCCC
T ss_pred             cceeeEeec-ccceEEEEeccceEEeccc
Confidence            653 44443 3666667899999999984

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.42  E-value=3.9e-08  Score=91.17  Aligned_cols=103  Identities=3%  Similarity=-0.080  Sum_probs=61.4

Q ss_pred             EEEeeCCccHHHHHHHHH--hhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHH
Q psy14461         90 YLDRIGDEGILLEEELKR--QTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRF  167 (535)
Q Consensus        90 ~v~iiG~G~aG~~~al~~--~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  167 (535)
                      +|+|||+||||+.||..+  ...+.+|+|||+.+.+++.    ..+.  ++.             .......+..+    
T Consensus         3 kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG~----~~~~--~~~-------------~~~~~~~~~~~----   59 (230)
T d1cjca2           3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGL----VRFG--VAP-------------DHPEVKNVINT----   59 (230)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTH----HHHT--SCT-------------TCGGGGGHHHH----
T ss_pred             eEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCce----ehhh--ccc-------------cccccccchhh----
Confidence            689999999999999644  4457899999999876432    1110  111             00111122222    


Q ss_pred             HHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEceeEEEcceEEEeeCceecC--CCCC
Q psy14461        168 CIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAVERRCLP--EPRN  225 (535)
Q Consensus       168 ~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~~~~~~d~lViATGs~p~~--~i~G  225 (535)
                             ....+...|+++..++..   ...+......-.||.++||||+.+..  ++++
T Consensus        60 -------~~~~~~~~~~~~~~~~~v---~~~~~~~~l~~~~d~v~~a~Ga~~~~~~~~~~  109 (230)
T d1cjca2          60 -------FTQTARSDRCAFYGNVEV---GRDVTVQELQDAYHAVVLSYGAEDKSRPIDPS  109 (230)
T ss_dssp             -------HHHHHTSTTEEEEBSCCB---TTTBCHHHHHHHSSEEEECCCCCEECCCCCTT
T ss_pred             -------hhhhhhcCCeeEEeeEEe---CccccHHHHHhhhceEEEEeeccccccccccc
Confidence                   124566778887765421   12222222223699999999997655  4554

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=98.40  E-value=5e-07  Score=79.58  Aligned_cols=106  Identities=11%  Similarity=-0.051  Sum_probs=64.7

Q ss_pred             EEEeeCCccHHHHHHHHH--hhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHH
Q psy14461         90 YLDRIGDEGILLEEELKR--QTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRF  167 (535)
Q Consensus        90 ~v~iiG~G~aG~~~al~~--~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  167 (535)
                      +|+|||+|++|+.+|...  .....+|||+|+.+.+..... .+.........          ......           
T Consensus         4 rivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~~~~~~-~~~~~~~~~~~----------~~~~~~-----------   61 (186)
T d1fcda1           4 KVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYL-SNEVIGGDRKL----------ESIKHG-----------   61 (186)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCEECSTT-HHHHHHTSSCG----------GGGEEC-----------
T ss_pred             cEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCccccccc-cccccchhhhh----------hhhhhh-----------
Confidence            579999999999887544  444578999999885422211 11110000000          000000           


Q ss_pred             HHHHHHHHHHHHHhcCcEEEEeEEEEec--CCEEEEce-eEEEcceEEEeeCceecC-CCCC
Q psy14461        168 CIRAKNDSMRELKALGIDIVRTAAAFTN--PHTIKLSN-RSVTGFNFLLAVERRCLP-EPRN  225 (535)
Q Consensus       168 ~~~~~~~~~~~~~~~gV~~~~g~~~~~~--~~~v~~~~-~~~~~d~lViATGs~p~~-~i~G  225 (535)
                              ...+...++++..++....+  .+.+...+ ..+.||+||+|||++|.. .+++
T Consensus        62 --------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~D~li~atG~~~~~~~i~~  115 (186)
T d1fcda1          62 --------YDGLRAHGIQVVHDSATGIDPDKKLVKTAGGAEFGYDRCVVAPGIELIYDKIEQ  115 (186)
T ss_dssp             --------SHHHHTTTEEEECCCEEECCTTTTEEEETTSCEEECSEEEECCCEEECCTTSTE
T ss_pred             --------hhhccccceeEeeeeeEeeeeccceeecccceeeccceEEEEeccccchhhhhh
Confidence                    12344568888877765543  34555543 789999999999999988 7765

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.39  E-value=7.5e-07  Score=73.11  Aligned_cols=88  Identities=17%  Similarity=0.042  Sum_probs=62.8

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRFC  168 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  168 (535)
                      .+++|||+|+.|+..|......+.+|||+|+.+.+      +|..                      |. ++.+      
T Consensus        22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~------l~~~----------------------d~-~~~~------   66 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAP------LPSF----------------------DP-MISE------   66 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS------STTS----------------------CH-HHHH------
T ss_pred             CEEEEECCChhhHHHHHHhhccccEEEEEeecchh------hhhc----------------------ch-hhHH------
Confidence            35799999999999998888889999999998864      2221                      21 1222      


Q ss_pred             HHHHHHHHHHHHhcCcEEEEeEE-EEe--c-CC--EEEEce-eEEEcceEEEeeC
Q psy14461        169 IRAKNDSMRELKALGIDIVRTAA-AFT--N-PH--TIKLSN-RSVTGFNFLLAVE  216 (535)
Q Consensus       169 ~~~~~~~~~~~~~~gV~~~~g~~-~~~--~-~~--~v~~~~-~~~~~d~lViATG  216 (535)
                           .+.+.+++.||+++.++. ..+  + ..  ++++++ .++.+|.||+|||
T Consensus        67 -----~~~~~l~~~GV~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~D~vi~a~G  116 (116)
T d1gesa2          67 -----TLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIG  116 (116)
T ss_dssp             -----HHHHHHHHHSCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred             -----HHHHHHHHCCCEEEeCCEEEEEEEcCCcEEEEEECCCCEEEcCEEEEecC
Confidence                 234677888999998863 222  2 22  455554 7899999999998

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.37  E-value=6.7e-07  Score=73.27  Aligned_cols=88  Identities=18%  Similarity=0.084  Sum_probs=62.4

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRFC  168 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  168 (535)
                      .+++|+|+|+.|+..|......+.+|||+|+.+.+      +|.+                      |. ++.       
T Consensus        22 ~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~i------l~~~----------------------d~-~~~-------   65 (115)
T d1lvla2          22 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERI------LPTY----------------------DS-ELT-------   65 (115)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSS------STTS----------------------CH-HHH-------
T ss_pred             CeEEEECCCHHHHHHHHHHhhcccceEEEeeeccc------cccc----------------------cc-hhH-------
Confidence            46899999999999998877888999999998865      2221                      21 122       


Q ss_pred             HHHHHHHHHHHHhcCcEEEEeE-EEEecCCEEEE-ce----eEEEcceEEEeeC
Q psy14461        169 IRAKNDSMRELKALGIDIVRTA-AAFTNPHTIKL-SN----RSVTGFNFLLAVE  216 (535)
Q Consensus       169 ~~~~~~~~~~~~~~gV~~~~g~-~~~~~~~~v~~-~~----~~~~~d~lViATG  216 (535)
                          ..+.+.+++.||+++.++ +...++..+.+ ..    .++.+|.||+|||
T Consensus        66 ----~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~~~~~~~~~i~~D~vi~A~G  115 (115)
T d1lvla2          66 ----APVAESLKKLGIALHLGHSVEGYENGCLLANDGKGGQLRLEADRVLVAVG  115 (115)
T ss_dssp             ----HHHHHHHHHHTCEEETTCEEEEEETTEEEEECSSSCCCEECCSCEEECCC
T ss_pred             ----HHHHHHHHhhcceEEcCcEEEEEcCCeEEEEEcCCCeEEEEcCEEEEecC
Confidence                223366778899999875 44444444333 21    5799999999998

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.37  E-value=1.1e-06  Score=78.51  Aligned_cols=110  Identities=6%  Similarity=-0.129  Sum_probs=69.5

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHH
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRF  167 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  167 (535)
                      -.+|+|||+||+|+.||+.+.+.+.+|+|||+.+..+...  .       .....+++++.    .......+.+.    
T Consensus         5 ~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~~g~~~--~-------~~~i~~~~~~~----~~~~~~~~~~~----   67 (190)
T d1trba1           5 HSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLT--T-------TTEVENWPGDP----NDLTGPLLMER----   67 (190)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGG--G-------CSBCCCSTTCC----SSCBHHHHHHH----
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEEeeccccccc--c-------cchhhhhhccc----cccchHHHHHH----
Confidence            3689999999999999999999999999999876432111  0       00001111110    11122223222    


Q ss_pred             HHHHHHHHHHHHHhcCcEEEEeEEEEecC----CEEEEceeEEEcceEEEeeCceecC
Q psy14461        168 CIRAKNDSMRELKALGIDIVRTAAAFTNP----HTIKLSNRSVTGFNFLLAVERRCLP  221 (535)
Q Consensus       168 ~~~~~~~~~~~~~~~gV~~~~g~~~~~~~----~~v~~~~~~~~~d~lViATGs~p~~  221 (535)
                             ...++...++++..+++...+.    ..+......+.++.+++|||..|+.
T Consensus        68 -------~~~~~~~~~~~~~~~~V~~~~~~~~~~~v~~~~~~~~~~~viva~G~~~~~  118 (190)
T d1trba1          68 -------MHEHATKFETEIIFDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASARY  118 (190)
T ss_dssp             -------HHHHHHHTTCEEECCCEEEEECSSSSEEEEESSCEEEEEEEEECCCEEECC
T ss_pred             -------HHHHHHhcCcEEecceeEEEecCCCcEEEEEeeeeEeeeeeeeecceeeee
Confidence                   2355667788888777655332    2344445789999999999998764

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.35  E-value=4.1e-07  Score=81.71  Aligned_cols=112  Identities=9%  Similarity=-0.017  Sum_probs=69.2

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHH
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRF  167 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  167 (535)
                      -.+|+|||+||+|+.||+.+.+.+.+|+|+|+.......+.+.......+.    +.+++    .......++....   
T Consensus         5 ~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~~~~~~~~~~~~~~~~----~~~~~----~~~~~~~el~~~~---   73 (192)
T d1vdca1           5 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVE----NFPGF----PEGILGVELTDKF---   73 (192)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSEEC----CSTTC----TTCEEHHHHHHHH---
T ss_pred             cceEEEECCCHHHHHHHHHHHHcCCcEEEEEeecccccccccccccchhhh----ccccc----cccccchHHHHHH---
Confidence            478999999999999999999999999999987754333222111100000    00111    1112233343332   


Q ss_pred             HHHHHHHHHHHHHhcCcEEEEeEEEEec--C--CEEEEceeEEEcceEEEeeCce
Q psy14461        168 CIRAKNDSMRELKALGIDIVRTAAAFTN--P--HTIKLSNRSVTGFNFLLAVERR  218 (535)
Q Consensus       168 ~~~~~~~~~~~~~~~gV~~~~g~~~~~~--~--~~v~~~~~~~~~d~lViATGs~  218 (535)
                              ..+.++.|+++..+++...+  .  +.+......+.+|.+++|+|..
T Consensus        74 --------~~q~~~~g~~i~~~~V~~~~~~~~~~~v~~~~~~~~~~~~~~a~g~~  120 (192)
T d1vdca1          74 --------RKQSERFGTTIFTETVTKVDFSSKPFKLFTDSKAILADAVILAIGAV  120 (192)
T ss_dssp             --------HHHHHHTTCEEECCCCCEEECSSSSEEEECSSEEEEEEEEEECCCEE
T ss_pred             --------HHHHHhhcceeeeeeEEecccccCcEEecccceeeeeeeEEEEeeee
Confidence                    25566788888877654432  2  2444445789999999999964

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=98.33  E-value=2.3e-06  Score=82.41  Aligned_cols=92  Identities=15%  Similarity=0.148  Sum_probs=63.3

Q ss_pred             hhcCCeEE-cceEEEEEEEeCCC------cE-EEEEecCCCCCceEEEcCEEEEccCCCCCCCCCC-------------c
Q psy14461        291 LTKAGVSI-QCCVIEKVISSFDG------MK-GVRGFHPESKEPFADVFKTVVNAMEKKFDFAALN-------------L  349 (535)
Q Consensus       291 l~~~gV~i-~~~~v~~i~~~~~~------~~-~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~-------------l  349 (535)
                      ++..++++ .++.+.++..+++.      ++ -+...+..+|+...+.++.|++|+|-........             .
T Consensus       148 ~~~~~v~~~~~~~~~~Li~~~~~~~~~~~rv~Gv~~~~~~~g~~~~~~ak~VilAtGG~~~~~~~~t~~~~~TGDG~~mA  227 (305)
T d1chua2         148 LNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGASKVYQYTTNPDISSGDGIAMA  227 (305)
T ss_dssp             HHCTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTEEEEEECSEEEECCCCCGGGSSSBSCGGGCSCHHHHHH
T ss_pred             HhccCcceeceeEEEEEEEEcCcccccCceEEEEEEEeCCCCcEEEEeecceEEeeeccccceeccCCCCceecccEeec
Confidence            34567888 88888887654221      23 2434333467767789999999998432211100             0


Q ss_pred             cccCeeecCCCceEcCCCCCcCCCCEEEeCCcC
Q psy14461        350 HHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIV  382 (535)
Q Consensus       350 ~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~  382 (535)
                      ..+|.++.+-++|.+|++.+|+.|++||+|+++
T Consensus       228 ~~aGa~l~~m~~iq~~~~g~t~~~g~~a~G~~~  260 (305)
T d1chua2         228 WRAGCRVANCGGVMVDDHGRTDVEGLYAIGEVS  260 (305)
T ss_dssp             HHTTCCEECSCEEECCTTCBCSSBTEEECGGGE
T ss_pred             cccceeeEecceeEECCcccCCCCCceecccEE
Confidence            235777777889999999999999999999974

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.25  E-value=8e-06  Score=76.73  Aligned_cols=155  Identities=20%  Similarity=0.169  Sum_probs=98.9

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCC-cEEEEEc-CcCCcc-----CcHHHHH----------------------------
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLGV-PVTLVYS-RRLLKH-----FDQEMVR----------------------------  285 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g~-~Vtlv~~-~~~l~~-----~~~~~~~----------------------------  285 (535)
                      |-+|+|||||+.|+-+|..|++.|. +|+|+++ +.+...     +.+...+                            
T Consensus         1 ~~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~~~~g~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g   80 (288)
T d3c96a1           1 PIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYIDQSG   80 (288)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHHSEEECEEEEECTTS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCceEEEECHHHHHHHHHcCchhhhHhhhcccccceeEcCCC
Confidence            4579999999999999999999996 8999999 654321     1111100                            


Q ss_pred             ----------------------------HHHH--hhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEE
Q psy14461        286 ----------------------------ILLS--SLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTV  334 (535)
Q Consensus       286 ----------------------------~~~~--~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~v  334 (535)
                                                  ....  .....++.+ .+.+++.+... ++.+.+.+.+ .+++.+++.+|++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~v~v~~~~-g~~~~~~~~ad~v  158 (288)
T d3c96a1          81 ATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEER-DGRVLIGARD-GHGKPQALGADVL  158 (288)
T ss_dssp             CEEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEEE-TTEEEEEEEE-TTSCEEEEEESEE
T ss_pred             CEEEeccccccccccCcccccchhhhHHHHHHHHHHhccCeeeecCcEEEEeeec-CCcEEEEEEc-CCCCeEEEeecee
Confidence                                        0111  112346778 88899888876 5777888764 3555668999999


Q ss_pred             EEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCC----CCcHHHHHHHHHHHHHHHhC
Q psy14461        335 VNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGK----PNNASMAAISARLIIERLYG  405 (535)
Q Consensus       335 i~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~----~~~~~~A~~~g~~aa~~i~g  405 (535)
                      +.|-|....+...    .    ..................+..+||+.+..    ..-...|+.++...+..+..
T Consensus       159 i~ADG~~S~vr~~----~----~~~~~~~~~~~~~~~~~~~~~~gda~h~~~p~~g~G~~~ai~d~~~l~~~l~~  225 (288)
T d3c96a1         159 VGADGIHSAVRAH----L----HPDQRPLRDPLPHWGRGRITLLGDAAHLMYPMGANGASQAILDGIELAAALAR  225 (288)
T ss_dssp             EECCCTTCHHHHH----H----CTTCCCCCCCCSCCCBTTEEECTHHHHCCCSSTTCTHHHHHHHHHHHHHHHHH
T ss_pred             eccCCccceeeee----e----ccccccccccccccccCcceecccccceeCCccccchhhhhhhHHHHHHHHhh
Confidence            9999976443211    0    00000011112233456899999998522    12355788888888877753

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=98.23  E-value=1.7e-05  Score=72.40  Aligned_cols=93  Identities=18%  Similarity=0.118  Sum_probs=64.2

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc--CcCC-----cc--------C----c------HHHHHHHHHhh-hcCCe
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS--RRLL-----KH--------F----D------QEMVRILLSSL-TKAGV  296 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~--~~~l-----~~--------~----~------~~~~~~~~~~l-~~~gV  296 (535)
                      .|+|||||+.|+|+|.+++|.|.++.+|+.  +.+.     |.        +    +      ......+++.+ ...++
T Consensus         4 DVIVIGgG~AG~eAA~~aAR~G~ktllit~~~~~ig~~~cnp~~gg~~kg~l~reid~kG~av~a~raQ~k~~l~~~~nL   83 (230)
T d2cula1           4 QVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEGLRPL   83 (230)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHTCTTE
T ss_pred             cEEEECcCHHHHHHHHHHHHCCCcEEEEEeccchhcccccCCccccCCCcceeeeeeccchhhhhHHHHHHHHHhhhcCH
Confidence            599999999999999999999999999986  2221     00        0    0      11223333443 34588


Q ss_pred             EEcceEEEEEEEeCCCcE-EEEEecCCCCCceEEEcCEEEEccCCC
Q psy14461        297 SIQCCVIEKVISSFDGMK-GVRGFHPESKEPFADVFKTVVNAMEKK  341 (535)
Q Consensus       297 ~i~~~~v~~i~~~~~~~~-~v~~~~~~~G~~~~~~~D~vi~a~G~~  341 (535)
                      .+...+|.++..+ ++++ .|.+   .+|.  ++.+..||+++|.-
T Consensus        84 ~i~q~~V~dli~e-~~~v~gV~t---~~G~--~~~AkaVILtTGTF  123 (230)
T d2cula1          84 HLFQATATGLLLE-GNRVVGVRT---WEGP--PARGEKVVLAVGSF  123 (230)
T ss_dssp             EEEECCEEEEEEE-TTEEEEEEE---TTSC--CEECSEEEECCTTC
T ss_pred             HHHhccceeeEec-ccceeeEEe---cccc--EEEEeEEEEccCcc
Confidence            8855566776655 4544 4666   4787  79999999999953

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.22  E-value=5.1e-06  Score=68.24  Aligned_cols=88  Identities=19%  Similarity=0.091  Sum_probs=62.6

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRFC  168 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  168 (535)
                      .+++|||+|..|+..|......+.+|+++++.+.+      +|.+                      |.           
T Consensus        23 ~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~l------l~~~----------------------d~-----------   63 (119)
T d3lada2          23 GKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKF------LPAV----------------------DE-----------   63 (119)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS------STTS----------------------CH-----------
T ss_pred             CeEEEECCChHHHHHHHHHHHcCCceEEEEeeccc------CCcc----------------------cc-----------
Confidence            56799999999999998888889999999998865      2221                      11           


Q ss_pred             HHHHHHHHHHHHhcCcEEEEeEE-EEe--cCC--EEEEce----eEEEcceEEEeeC
Q psy14461        169 IRAKNDSMRELKALGIDIVRTAA-AFT--NPH--TIKLSN----RSVTGFNFLLAVE  216 (535)
Q Consensus       169 ~~~~~~~~~~~~~~gV~~~~g~~-~~~--~~~--~v~~~~----~~~~~d~lViATG  216 (535)
                       ++...+.+.+++.||+++.++- +..  ++.  ++++.+    .++.+|+|++|+|
T Consensus        64 -ei~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~~~~D~vlvAvG  119 (119)
T d3lada2          64 -QVAKEAQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVG  119 (119)
T ss_dssp             -HHHHHHHHHHHHTTEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSC
T ss_pred             -hhHHHHHHHHHhcCceeecCcEEEEEEEeCCEEEEEEEECCCCEEEECCEEEEeeC
Confidence             1222334678889999999852 222  233  344432    5799999999998

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.21  E-value=2.7e-06  Score=71.44  Aligned_cols=89  Identities=11%  Similarity=0.009  Sum_probs=61.5

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRFC  168 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  168 (535)
                      .+++|||+|+.|+..|-.....+.+|+|+|+.+.+      ++..   ++                   +.+        
T Consensus        36 k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~------l~~~---~~-------------------~~~--------   79 (133)
T d1q1ra2          36 NRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARV------LERV---TA-------------------PPV--------   79 (133)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSST------TTTT---SC-------------------HHH--------
T ss_pred             CEEEEECCchHHHHHHHHHHhhCcceeeeeecccc------cccc---cc-------------------hhh--------
Confidence            36799999999999998888889999999999864      1111   01                   011        


Q ss_pred             HHHHHHHHHHHHhcCcEEEEeE-EEEe----cCC---EEEEce-eEEEcceEEEeeC
Q psy14461        169 IRAKNDSMRELKALGIDIVRTA-AAFT----NPH---TIKLSN-RSVTGFNFLLAVE  216 (535)
Q Consensus       169 ~~~~~~~~~~~~~~gV~~~~g~-~~~~----~~~---~v~~~~-~~~~~d~lViATG  216 (535)
                         ...+.+.+++.||+++.+. +..+    +..   .+.+++ .++.+|.||+|+|
T Consensus        80 ---~~~~~~~~~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~vi~a~G  133 (133)
T d1q1ra2          80 ---SAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIG  133 (133)
T ss_dssp             ---HHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCC
T ss_pred             ---hhhhhhcccccccEEEeCCeEEEEEEeCCCceEEEEECCCCCEEECCEEEEeeC
Confidence               1122356788899999874 2222    122   244544 7899999999998

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=98.15  E-value=4.6e-06  Score=77.91  Aligned_cols=146  Identities=17%  Similarity=0.126  Sum_probs=92.1

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc------CcHHHHHHHH-------------------------
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH------FDQEMVRILL-------------------------  288 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~------~~~~~~~~~~-------------------------  288 (535)
                      .+||+|||+|+.|+-+|..|++.|.+|+|+++ +.+...      +.+.....+.                         
T Consensus         4 ~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~   83 (265)
T d2voua1           4 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDALTGE   83 (265)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEETTTCC
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceEEEECccHHHHHHHcCcchhhhccCCCcceeEeccCCc
Confidence            57899999999999999999999999999998 654321      1222211111                         


Q ss_pred             -------------------Hh-hhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCC
Q psy14461        289 -------------------SS-LTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAAL  347 (535)
Q Consensus       289 -------------------~~-l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l  347 (535)
                                         .. -...++.+ .+..++++... ++.+++++   .||+  ++.+|+++.|.|........
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~v~v~~---~dG~--~~~~d~~v~adG~~s~~r~~  157 (265)
T d2voua1          84 RVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQD-SETVQMRF---SDGT--KAEANWVIGADGGASVVRKR  157 (265)
T ss_dssp             EEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEEC-SSCEEEEE---TTSC--EEEESEEEECCCTTCHHHHH
T ss_pred             eecccccccccchhHHHHHHHHHhcccceeecCcEEEEEEee-CCceEEEE---CCCC--EEEEEEEecccccccccccc
Confidence                               11 12235677 88999999876 56678887   4788  89999999999976543211


Q ss_pred             CccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCC-CC---CcHHHHHHHHHHHHHHHhC
Q psy14461        348 NLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHG-KP---NNASMAAISARLIIERLYG  405 (535)
Q Consensus       348 ~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~-~~---~~~~~A~~~g~~aa~~i~g  405 (535)
                            +.       .............+..||.... .|   .-...+..++...+..+..
T Consensus       158 ------~~-------~~~~~~~~~~~~~~~~~~~a~~~~p~~~~g~~~~~~d~~~l~~~l~~  206 (265)
T d2voua1         158 ------LL-------GIETVDRMVHGRVLLIGDAAVTPRPHAAAGGAKASDDARTLAEVFTK  206 (265)
T ss_dssp             ------HH-------CCCCCSCSEETTEEECGGGTSBCCGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred             ------cc-------ccccccccccccccccccccccccccccccceeeeccHHHHHHHHhh
Confidence                  00       0001111223456677777631 11   1233566677777766653

>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.12  E-value=2.1e-06  Score=68.93  Aligned_cols=64  Identities=11%  Similarity=0.171  Sum_probs=50.3

Q ss_pred             hHHHHhhhcCCcEEEEeCCCchhhHHHHHHHHHhcCCcc---eEEEEEeeCCccHHHHHHHHHhhCCCe
Q psy14461         48 PAYISRLSYENRILIFTHAVLREENARAERYLNARGDRF---AVLYLDRIGDEGILLEEELKRQTNQRR  113 (535)
Q Consensus        48 ~~~~~~~i~~~~v~v~~k~~cp~~~~~~k~~~~~~~~~~---~~~~v~iiG~G~aG~~~al~~~~~~~~  113 (535)
                      ++++...+++++|++|++++|| ||.++|.++.+.+.++   .+.++++...+ ..+...+.+.++..+
T Consensus         2 ~~~v~~~i~~~~Vviysk~~Cp-~C~~ak~ll~~~~~~~~~~~~~e~d~~~d~-~~~~~~l~~~~g~~t   68 (105)
T d1ktea_           2 QAFVNSKIQPGKVVVFIKPTCP-FCRKTQELLSQLPFKEGLLEFVDITATSDT-NEIQDYLQQLTGART   68 (105)
T ss_dssp             HHHHHHHCCTTCEEEEECSSCH-HHHHHHHHHHHSCBCTTSEEEEEGGGSTTH-HHHHHHHHHHHSCCC
T ss_pred             hhHHHHHhccCCEEEEECCCCc-hHHHHHHHHHHhCCccceeeeeeccccccc-HHHHHHHhhccCCCc
Confidence            5788999999999999999999 9999999999988663   34455555554 347778877766544

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=98.12  E-value=2.8e-05  Score=74.91  Aligned_cols=94  Identities=15%  Similarity=0.159  Sum_probs=65.9

Q ss_pred             HhhhcCCeEE-cceEEEEEEEeCCCcEE-EEEecCCCCCceEEEcCEEEEccCC-----CCCCCCCCc--------cccC
Q psy14461        289 SSLTKAGVSI-QCCVIEKVISSFDGMKG-VRGFHPESKEPFADVFKTVVNAMEK-----KFDFAALNL--------HHIG  353 (535)
Q Consensus       289 ~~l~~~gV~i-~~~~v~~i~~~~~~~~~-v~~~~~~~G~~~~~~~D~vi~a~G~-----~p~~~~l~l--------~~~g  353 (535)
                      +..+..+|++ .++.++++..+ ++++. +...+..+|+...+.++.||+|||-     .+.+.....        ..+|
T Consensus       143 ~~~~~~~v~i~~~~~v~~Ll~d-~g~v~Gvv~~~~~~g~~~~~~AkaVILATGG~g~~y~~ttn~~~~tGDG~~mA~~aG  221 (311)
T d1kf6a2         143 TSLQFPQIQRFDEHFVLDILVD-DGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMALSHG  221 (311)
T ss_dssp             HHTTCTTEEEEETEEEEEEEEE-TTEEEEEEEEETTTTEEEEEECSCEEECCCCCGGGSSSBSSCTTCSCHHHHHHHTTT
T ss_pred             HHHccCcceeEeeeEeeeeEec-CCcceeEEEEEcCCCcEEEEECCEEEEcCCCccccccccCCCCCcCcHHHHHHHhcc
Confidence            3445568999 99999999877 56654 4443335788778899999999983     222211100        1345


Q ss_pred             eeecCCCceEcCCCCCcCCCCEEEeCCcCC
Q psy14461        354 VDIKKKSYVVCNEKDQTSVGNIFAVGGIVH  383 (535)
Q Consensus       354 l~~~~~G~i~vd~~~~T~~~~IyA~GD~~~  383 (535)
                      .++.+-.+|.++++..++.+++|+.|+++.
T Consensus       222 a~l~dme~iq~~p~~~~~~~~~~~~~~~~~  251 (311)
T d1kf6a2         222 VPLRDMGGIETDQNCETRIKGLFAVGECSS  251 (311)
T ss_dssp             CCEESCCEEECCTTSBCSSBTEEECGGGEE
T ss_pred             cceeecccccccccchhcccCCCcCcceee
Confidence            555556789999988999999999999873

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=3.6e-06  Score=81.84  Aligned_cols=107  Identities=10%  Similarity=-0.010  Sum_probs=64.4

Q ss_pred             hcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCC---Ccccc---Cee-ecCCCc-e
Q psy14461        292 TKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAAL---NLHHI---GVD-IKKKSY-V  362 (535)
Q Consensus       292 ~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l---~l~~~---gl~-~~~~G~-i  362 (535)
                      ++.|+++ +++.|++|..+ ++.+.|++   .+|+  ++++|.||+|++..--....   .+...   .+. ....+. -
T Consensus       218 ~~~g~~i~~~~~v~~I~~~-~~~v~v~~---~~g~--~~~ad~vI~a~p~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~  291 (383)
T d2v5za1         218 DLLGDRVKLERPVIYIDQT-RENVLVET---LNHE--MYEAKYVISAIPPTLGMKIHFNPPLPMMRNQMITRVFPPGILT  291 (383)
T ss_dssp             HHHGGGEEESCCEEEEECS-SSSEEEEE---TTSC--EEEESEEEECSCGGGGGGSEEESCCCHHHHHHTTSCCCTTHHH
T ss_pred             HHcCCeEEecCcceEEEec-CCeEEEEE---CCCC--EEECCEEEECCCHHHHhhCccCCCCCHHHHHHHHHhccCCccc
Confidence            4458889 99999999876 56677777   4787  89999999998632111000   00000   000 000111 1


Q ss_pred             EcCCCCCcCCCCEEEeCCcCC-CCCCcHHHHHHHHHHHHHHHh
Q psy14461        363 VCNEKDQTSVGNIFAVGGIVH-GKPNNASMAAISARLIIERLY  404 (535)
Q Consensus       363 ~vd~~~~T~~~~IyA~GD~~~-~~~~~~~~A~~~g~~aa~~i~  404 (535)
                      ...........+|+.+|+... ..+.....|+.+|+.+|..++
T Consensus       292 ~~~~~~~~~~~~~~~~G~~~~~~~~g~~~ga~~~g~~~a~~i~  334 (383)
T d2v5za1         292 QYGRVLRQPVDRIYFAGTETATHWSGYMEGAVEAGERAAREIL  334 (383)
T ss_dssp             HHGGGTTCCBTTEEECSGGGCSSSTTSHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhcCCcCceEeccccccccCCcchHHHHHHHHHHHHHHH
Confidence            111223445567999997652 234566779999999999875

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.09  E-value=5.5e-06  Score=78.84  Aligned_cols=102  Identities=9%  Similarity=-0.021  Sum_probs=70.7

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC--c-----cCc---------------------------------
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL--K-----HFD---------------------------------  280 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l--~-----~~~---------------------------------  280 (535)
                      .+|+|||||++|+-+|..|++.|.+|+|+++ +...  +     .+.                                 
T Consensus         3 ~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~l~~~~~~~~~~~~~~~~~   82 (292)
T d1k0ia1           3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFAGQ   82 (292)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEETTE
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCceEEEECHHHHHHHHHcCchHHHHhhcccccceEEEeccc
Confidence            3799999999999999999999999999998 5321  0     010                                 


Q ss_pred             --------------------HHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccC
Q psy14461        281 --------------------QEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAME  339 (535)
Q Consensus       281 --------------------~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G  339 (535)
                                          ..+.+.+.+.+++.+..+ ...........+++.+.|++..  +|++.++.+|+||.|.|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~g~~~~i~a~~vVgADG  160 (292)
T d1k0ia1          83 RRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFER--DGERLRLDCDYIAGCDG  160 (292)
T ss_dssp             EEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEE--TTEEEEEECSEEEECCC
T ss_pred             ccccccccccccccceeecHHHHHHHHHHHHHhCCCcEEEcceeeeeeeeccCceEEEEec--CCcEEEEEeCEEEECCC
Confidence                                223344455555666555 5554444443334566777653  77767899999999999


Q ss_pred             CCCCCC
Q psy14461        340 KKFDFA  345 (535)
Q Consensus       340 ~~p~~~  345 (535)
                      .+....
T Consensus       161 ~~S~vR  166 (292)
T d1k0ia1         161 FHGISR  166 (292)
T ss_dssp             TTCSTG
T ss_pred             CCCccc
Confidence            876543

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=98.07  E-value=4.4e-06  Score=77.66  Aligned_cols=36  Identities=17%  Similarity=0.116  Sum_probs=32.7

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLS  124 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~  124 (535)
                      +||+|||+|++|+.+|+.+...+.+|+|+||++.++
T Consensus         3 yDViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~g   38 (251)
T d2i0za1           3 YDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLG   38 (251)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCC
Confidence            578999999999999999999999999999988653

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.07  E-value=2.8e-06  Score=75.14  Aligned_cols=32  Identities=9%  Similarity=-0.029  Sum_probs=30.3

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecC
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERG  120 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~  120 (535)
                      +||+|||+||+|+.+|+.....+.+|+|||+.
T Consensus         2 yDViIIGgGpaGl~AAi~aar~G~~v~iie~~   33 (184)
T d1fl2a1           2 YDVLIVGSGPAGAAAAIYSARKGIRTGLMGER   33 (184)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCeEEEEEEe
Confidence            78999999999999999999999999999975

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.07  E-value=1.3e-05  Score=65.51  Aligned_cols=88  Identities=15%  Similarity=0.091  Sum_probs=59.1

Q ss_pred             EEEEeeCCccHHHHHHHH--Hh-hCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHH
Q psy14461         89 LYLDRIGDEGILLEEELK--RQ-TNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIK  165 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~--~~-~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~  165 (535)
                      .+++|||+|+.|+..|-.  .. ..+.+|+++|+.+.+      +|.+                      |. ++     
T Consensus        19 ~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~i------l~~~----------------------d~-~~-----   64 (117)
T d1feca2          19 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMI------LRGF----------------------DS-EL-----   64 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSS------STTS----------------------CH-HH-----
T ss_pred             CeEEEECCChHHHHHHHHhHhhcccccccceecccccc------cccc----------------------cc-hh-----
Confidence            467999999999987743  22 346799999998755      2211                      11 12     


Q ss_pred             HHHHHHHHHHHHHHHhcCcEEEEeE-EEEe---cCC--EEEEce-eEEEcceEEEeeC
Q psy14461        166 RFCIRAKNDSMRELKALGIDIVRTA-AAFT---NPH--TIKLSN-RSVTGFNFLLAVE  216 (535)
Q Consensus       166 ~~~~~~~~~~~~~~~~~gV~~~~g~-~~~~---~~~--~v~~~~-~~~~~d~lViATG  216 (535)
                            ...+.+.+++.||+++.++ +..+   ++.  .+.+++ .++.+|.||+|||
T Consensus        65 ------~~~~~~~l~~~GI~v~~~~~v~~i~~~~~g~~~v~~~~g~~i~~D~Vi~a~G  116 (117)
T d1feca2          65 ------RKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIG  116 (117)
T ss_dssp             ------HHHHHHHHHHTTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred             ------hHHHHHHHhhCcEEEEcCCEEEEEEECCCCEEEEEECCCCEEEcCEEEEecC
Confidence                  2223467888999999886 2222   122  355544 7899999999999

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=98.06  E-value=4.3e-06  Score=80.35  Aligned_cols=39  Identities=10%  Similarity=-0.082  Sum_probs=34.9

Q ss_pred             eEEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccc
Q psy14461         87 AVLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSF  125 (535)
Q Consensus        87 ~~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~  125 (535)
                      +.++|+|||+|++|+++|..+...+.+|+|||+.+.+++
T Consensus         6 ~~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGG   44 (298)
T d1w4xa1           6 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGG   44 (298)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCT
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCccc
Confidence            468999999999999999988889999999999987654

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=98.04  E-value=2.6e-05  Score=73.18  Aligned_cols=111  Identities=14%  Similarity=0.068  Sum_probs=66.4

Q ss_pred             cHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecC
Q psy14461        280 DQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKK  358 (535)
Q Consensus       280 ~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~  358 (535)
                      +..+...+.+.+++.|+++ .+++|++|+.+ ++.+.|++   ++|   ++.||.||+|+|.-... ++  +.+|+..- 
T Consensus       150 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~-~~~~~V~t---~~g---~i~a~~vV~AaG~~s~~-l~--~~~G~~~~-  218 (276)
T d1ryia1         150 PYFVCKAYVKAAKMLGAEIFEHTPVLHVERD-GEALFIKT---PSG---DVWANHVVVASGVWSGM-FF--KQLGLNNA-  218 (276)
T ss_dssp             HHHHHHHHHHHHHHTTCEEETTCCCCEEECS-SSSEEEEE---TTE---EEEEEEEEECCGGGTHH-HH--HHTTCCCC-
T ss_pred             cccchhHHHHHHHHcCCEEecceEEEeEEee-cceEEEec---CCe---EEEcCEEEECCCccHHH-HH--hhcCCCcc-
Confidence            3456677778888999999 99999999875 45566766   255   69999999999964321 11  34444322 


Q ss_pred             CCceEcCCCCCcCCCCE-EEeCCcCCCCCCcHHHHHHHHHHHHHHHhCCC
Q psy14461        359 KSYVVCNEKDQTSVGNI-FAVGGIVHGKPNNASMAAISARLIIERLYGMQ  407 (535)
Q Consensus       359 ~G~i~vd~~~~T~~~~I-yA~GD~~~~~~~~~~~A~~~g~~aa~~i~g~~  407 (535)
                      ++...+..+-  ..+++ ++.|... .+..+   +-..|+..+.-+.+..
T Consensus       219 ~~~p~~~~~p--~~~~~~~~~g~~~-~gi~~---~p~~g~~i~~~~~~~~  262 (276)
T d1ryia1         219 DGKPYIGRHP--EDSRILFAAGHFR-NGILL---APATGALISDLIMNKE  262 (276)
T ss_dssp             SSCCEEEEET--TEEEEEEEECCSS-CTTTT---HHHHHHHHHHHHTTCC
T ss_pred             cccceecccc--CCCCEEECCCCCC-CeEEE---CccHHHHHHHHHhcCC
Confidence            2222211110  12234 4666544 22222   3335677777777654

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.03  E-value=2.4e-05  Score=64.51  Aligned_cols=87  Identities=11%  Similarity=-0.009  Sum_probs=60.7

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRFC  168 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  168 (535)
                      .+++|||+|+.|+..|-.....+.+|||+|+.+.+      ++..                     ++.           
T Consensus        31 k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~------l~~~---------------------~d~-----------   72 (123)
T d1nhpa2          31 NNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRP------LGVY---------------------LDK-----------   72 (123)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST------TTTT---------------------CCH-----------
T ss_pred             CEEEEECChHHHHHHHHHhhccceEEEEEEecCcc------cccc---------------------cch-----------
Confidence            46799999999999998888889999999998754      1111                     111           


Q ss_pred             HHHHHHHHHHHHhcCcEEEEeEE-EEec--C--CEEEEceeEEEcceEEEe
Q psy14461        169 IRAKNDSMRELKALGIDIVRTAA-AFTN--P--HTIKLSNRSVTGFNFLLA  214 (535)
Q Consensus       169 ~~~~~~~~~~~~~~gV~~~~g~~-~~~~--~--~~v~~~~~~~~~d~lViA  214 (535)
                       ++...+.+.+++.||+++.++. ..+.  +  ..+..++.++.+|.||+|
T Consensus        73 -~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~dg~~i~~D~vi~a  122 (123)
T d1nhpa2          73 -EFTDVLTEEMEANNITIATGETVERYEGDGRVQKVVTDKNAYDADLVVVA  122 (123)
T ss_dssp             -HHHHHHHHHHHTTTEEEEESCCEEEEECSSBCCEEEESSCEEECSEEEEC
T ss_pred             -hhHHHHHHHhhcCCeEEEeCceEEEEEcCCCEEEEEeCCCEEECCEEEEE
Confidence             1122234678889999999863 2222  2  234445588999999998

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=1e-05  Score=68.07  Aligned_cols=88  Identities=16%  Similarity=0.020  Sum_probs=58.0

Q ss_pred             EEEeeCCccHHHHHHHHH----hhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHH
Q psy14461         90 YLDRIGDEGILLEEELKR----QTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIK  165 (535)
Q Consensus        90 ~v~iiG~G~aG~~~al~~----~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~  165 (535)
                      +++|||+|+.|+..|...    ...+.+|+++++++.+      ++..   +                  +. ++     
T Consensus        39 ~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~------l~~~---~------------------~~-~~-----   85 (137)
T d1m6ia2          39 SITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGN------MGKI---L------------------PE-YL-----   85 (137)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSST------TTTT---S------------------CH-HH-----
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccC------Cccc---C------------------CH-HH-----
Confidence            579999999997665432    2357899999998854      1111   0                  10 11     


Q ss_pred             HHHHHHHHHHHHHHHhcCcEEEEeE-EEEe--cCC--EEEEce-eEEEcceEEEeeC
Q psy14461        166 RFCIRAKNDSMRELKALGIDIVRTA-AAFT--NPH--TIKLSN-RSVTGFNFLLAVE  216 (535)
Q Consensus       166 ~~~~~~~~~~~~~~~~~gV~~~~g~-~~~~--~~~--~v~~~~-~~~~~d~lViATG  216 (535)
                            ...+.+.+++.||+++.++ +..+  ++.  .+++++ .++.+|.||+|||
T Consensus        86 ------~~~~~~~l~~~GV~~~~~~~V~~i~~~~~~~~v~l~~G~~i~aD~Vi~A~G  136 (137)
T d1m6ia2          86 ------SNWTMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVG  136 (137)
T ss_dssp             ------HHHHHHHHHTTTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCC
T ss_pred             ------HHHHHHHHHhCCcEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEEeec
Confidence                  1223467888999999875 3332  233  455544 7899999999999

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=98.02  E-value=1.3e-05  Score=73.10  Aligned_cols=115  Identities=12%  Similarity=-0.065  Sum_probs=64.9

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCc-ccccccccccccccccchhh-cccccccccccccCHHHHHHHHH
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSH-LSFRKKRRLYYPVAMSDLEL-EQDSTSALNVTIRNWNAATKLIK  165 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~-~~~~~~~l~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~l~~~~~  165 (535)
                      .+||+|||+|+||+.||+...+.+.++.||+++.. ++...|. |..-....+... ..+      ........+....+
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR~G~ktllit~~~~~ig~~~cn-p~~gg~~kg~l~reid------~kG~av~a~raQ~k   74 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLP-PKPPFPPGSLLERAYD------PKDERVWAFHARAK   74 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSC-CCSCCCTTCHHHHHCC------TTCCCHHHHHHHHH
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEEEEeccchhcccccC-CccccCCCcceeeeee------ccchhhhhHHHHHH
Confidence            36899999999999999999999999999998742 2222121 110000011000 000      00011111111111


Q ss_pred             HHHHHHHHHHHHHHHhcCcEEEEeEEEEe--cCCE---EEEc-eeEEEcceEEEeeCcee
Q psy14461        166 RFCIRAKNDSMRELKALGIDIVRTAAAFT--NPHT---IKLS-NRSVTGFNFLLAVERRC  219 (535)
Q Consensus       166 ~~~~~~~~~~~~~~~~~gV~~~~g~~~~~--~~~~---v~~~-~~~~~~d~lViATGs~p  219 (535)
                                +......+++++.+++...  ++..   |.+. +.++.++.||||||+-.
T Consensus        75 ----------~~l~~~~nL~i~q~~V~dli~e~~~v~gV~t~~G~~~~AkaVILtTGTFL  124 (230)
T d2cula1          75 ----------YLLEGLRPLHLFQATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFL  124 (230)
T ss_dssp             ----------HHHHTCTTEEEEECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCS
T ss_pred             ----------HHHhhhcCHHHHhccceeeEecccceeeEEeccccEEEEeEEEEccCcce
Confidence                      1222345899999887652  2332   3343 37899999999999743

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=2.7e-05  Score=64.34  Aligned_cols=88  Identities=13%  Similarity=0.069  Sum_probs=59.9

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRFC  168 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  168 (535)
                      .+++|||+|..|+..|......+.+|+|+++++.+      ++.+                      |. ++.       
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~------l~~~----------------------d~-~~~-------   66 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKV------LRSF----------------------DS-MIS-------   66 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS------CTTS----------------------CH-HHH-------
T ss_pred             CEEEEEcCCccHHHHHHHHhcCCcEEEEEeecccc------ccch----------------------hh-HHH-------
Confidence            36799999999999998888889999999999855      2211                      11 122       


Q ss_pred             HHHHHHHHHHHHhcCcEEEEeEEE-Ee--cCCEEEEc------------eeEEEcceEEEeeC
Q psy14461        169 IRAKNDSMRELKALGIDIVRTAAA-FT--NPHTIKLS------------NRSVTGFNFLLAVE  216 (535)
Q Consensus       169 ~~~~~~~~~~~~~~gV~~~~g~~~-~~--~~~~v~~~------------~~~~~~d~lViATG  216 (535)
                          ..+.+.+++.||+++.++.. .+  +...+.++            .....+|.|++|||
T Consensus        67 ----~~~~~~l~~~Gv~i~~~~~v~~i~~~~~g~~v~~~~~~~g~~~~~~~~~~~D~vl~a~G  125 (125)
T d3grsa2          67 ----TNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIG  125 (125)
T ss_dssp             ----HHHHHHHHHTTCEEETTEEEEEEEEETTEEEEEEEECCTTSCCEEEEEEEESEEEECSC
T ss_pred             ----HHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEEEccCCcCcCccccccCCEEEEEeC
Confidence                22346778899999987632 22  22222221            13578999999998

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=97.98  E-value=1.8e-05  Score=74.61  Aligned_cols=104  Identities=10%  Similarity=0.024  Sum_probs=61.5

Q ss_pred             HHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcC
Q psy14461        287 LLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCN  365 (535)
Q Consensus       287 ~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd  365 (535)
                      +.+.+++.|+++ .+++|++|+.. ++++.|.+   ++|   ++.+|.||+|+|.-.+. ++  +.+|+...... ..+.
T Consensus       156 l~~~a~~~Gv~i~~~~~V~~i~~~-~~~v~V~t---~~g---~i~a~~VViAaG~~s~~-l~--~~lg~~~~~~~-~~~~  224 (281)
T d2gf3a1         156 YRELAEARGAKVLTHTRVEDFDIS-PDSVKIET---ANG---SYTADKLIVSMGAWNSK-LL--SKLNLDIPDEH-FIID  224 (281)
T ss_dssp             HHHHHHHTTCEEECSCCEEEEEEC-SSCEEEEE---TTE---EEEEEEEEECCGGGHHH-HG--GGGTEECCTSC-CEEE
T ss_pred             cccccccccccccCCcEEEEEEEE-CCEEEEEE---CCc---EEEcCEEEECCCCcchh-hH--HhcCCcccccc-ceec
Confidence            345567789999 99999999987 56677776   355   59999999999964332 22  45566543222 1111


Q ss_pred             CCCCcCCCCE-EEeCCcCCCCCCcHHHHHHHHHHHHHHHhCCC
Q psy14461        366 EKDQTSVGNI-FAVGGIVHGKPNNASMAAISARLIIERLYGMQ  407 (535)
Q Consensus       366 ~~~~T~~~~I-yA~GD~~~~~~~~~~~A~~~g~~aa~~i~g~~  407 (535)
                        .....+++ .+.|..- .+..+   +-..|++.++-++...
T Consensus       225 --~~P~~~~~~~~~g~~g-~g~~~---~p~~G~~~~~~~~~~~  261 (281)
T d2gf3a1         225 --LHPEHSNVVIAAGFSG-HGFKF---SSGVGEVLSQLALTGK  261 (281)
T ss_dssp             --EETTEEEEEEEECCTT-CCGGG---HHHHHHHHHHHHHHSC
T ss_pred             --cccCCCCEEEEeccCC-ccccc---ChhHHHHHHHHHhcCC
Confidence              01123444 4445432 12222   3446777777766543

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.92  E-value=2.1e-06  Score=76.66  Aligned_cols=36  Identities=6%  Similarity=-0.140  Sum_probs=31.4

Q ss_pred             EEEeeCCccHHHHHHHHHhhCCC-eEEEEecCCcccc
Q psy14461         90 YLDRIGDEGILLEEELKRQTNQR-RDELQERGSHLSF  125 (535)
Q Consensus        90 ~v~iiG~G~aG~~~al~~~~~~~-~V~lie~~~~~~~  125 (535)
                      +|+|||+|++|+.+|+.+...+. .|+||||.+.++.
T Consensus         6 kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~gg   42 (196)
T d1gtea4           6 KIALLGAGPASISCASFLARLGYSDITIFEKQEYVGG   42 (196)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCST
T ss_pred             EEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcccc
Confidence            46999999999999999988887 5999999987643

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.92  E-value=7.5e-05  Score=60.70  Aligned_cols=86  Identities=16%  Similarity=0.130  Sum_probs=59.5

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRFC  168 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  168 (535)
                      .+++|||+|+.|+..|......+.+|||+|+.+.+      ++.+                      |. ++.       
T Consensus        23 ~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~i------l~~~----------------------d~-~~~-------   66 (117)
T d1ebda2          23 KSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEI------LSGF----------------------EK-QMA-------   66 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS------STTS----------------------CH-HHH-------
T ss_pred             CeEEEECCCccceeeeeeecccccEEEEEEeccee------cccc----------------------cc-hhH-------
Confidence            46899999999999998888889999999999865      2211                      11 122       


Q ss_pred             HHHHHHHHHHHHhcCcEEEEeEEEE-e--cCC--EEEEc--e--eEEEcceEEEe
Q psy14461        169 IRAKNDSMRELKALGIDIVRTAAAF-T--NPH--TIKLS--N--RSVTGFNFLLA  214 (535)
Q Consensus       169 ~~~~~~~~~~~~~~gV~~~~g~~~~-~--~~~--~v~~~--~--~~~~~d~lViA  214 (535)
                          ..+.+.+++.||+++.++... +  ++.  .+.+.  +  .++.+|.|++.
T Consensus        67 ----~~l~~~l~~~GI~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~~D~Vlvs  117 (117)
T d1ebda2          67 ----AIIKKRLKKKGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVT  117 (117)
T ss_dssp             ----HHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEEC
T ss_pred             ----HHHHHHHHhcCCEEEcCCEEEEEEEcCCEEEEEEEeCCCEEEEEeEEEEEC
Confidence                223467788999999886322 2  222  33332  2  57899999873

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=97.87  E-value=4e-05  Score=73.16  Aligned_cols=48  Identities=19%  Similarity=0.136  Sum_probs=37.0

Q ss_pred             HHHhhhcCCeEE-cceEEEEEEEeCCCcEE-EEEecCCCCCceEEEcCEEEEccCCC
Q psy14461        287 LLSSLTKAGVSI-QCCVIEKVISSFDGMKG-VRGFHPESKEPFADVFKTVVNAMEKK  341 (535)
Q Consensus       287 ~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~-v~~~~~~~G~~~~~~~D~vi~a~G~~  341 (535)
                      +.+.+++.|+++ .+++|+++..+ ++++. |.+   ++|   +++||.||+|+|.-
T Consensus       154 l~~~a~~~gv~i~~~~~V~~i~~~-~~~v~~V~T---~~g---~i~a~~VV~aaG~~  203 (305)
T d1pj5a2         154 LIKRTESAGVTYRGSTTVTGIEQS-GGRVTGVQT---ADG---VIPADIVVSCAGFW  203 (305)
T ss_dssp             HHHHHHHTTCEEECSCCEEEEEEE-TTEEEEEEE---TTE---EEECSEEEECCGGG
T ss_pred             HHhhhhcccccccCCceEEEEEEe-CCEEEEEec---cce---eEECCEEEEecchh
Confidence            344556789999 99999999987 56554 555   355   69999999999964

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=97.86  E-value=1.7e-05  Score=65.51  Aligned_cols=88  Identities=15%  Similarity=-0.072  Sum_probs=61.3

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRFC  168 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  168 (535)
                      .+++|+|+|..|+..|-.....+.+|+++|+.+.+      ++.+                      |.           
T Consensus        27 ~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~i------l~~~----------------------d~-----------   67 (125)
T d1ojta2          27 GKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGL------MQGA----------------------DR-----------   67 (125)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSS------STTS----------------------CH-----------
T ss_pred             CeEEEECCCHHHHHHHHHhhcCCCEEEEEEeeccc------cccc----------------------hh-----------
Confidence            46799999999999988777789999999998855      2211                      11           


Q ss_pred             HHHHHHHHHHHHhcCcEEEEeEEEE-e--cCC--EEEEce-----eEEEcceEEEeeC
Q psy14461        169 IRAKNDSMRELKALGIDIVRTAAAF-T--NPH--TIKLSN-----RSVTGFNFLLAVE  216 (535)
Q Consensus       169 ~~~~~~~~~~~~~~gV~~~~g~~~~-~--~~~--~v~~~~-----~~~~~d~lViATG  216 (535)
                       ++...+...+++.||+++.++... .  ...  .+.+..     +++.+|.|++|+|
T Consensus        68 -~~~~~l~~~l~~~gv~~~~~~~v~~v~~~~~g~~v~~~~~~g~~~~i~~D~vl~A~G  124 (125)
T d1ojta2          68 -DLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAG  124 (125)
T ss_dssp             -HHHHHHHHHHGGGEEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCC
T ss_pred             -hHHHHHHHHHHHcCcccccCcEEEEEEEcCCcEEEEEEeCCCCeEEEEcCEEEEecC
Confidence             122233467888999998876322 1  222  344422     4699999999998

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.86  E-value=4.3e-06  Score=76.85  Aligned_cols=88  Identities=9%  Similarity=0.026  Sum_probs=61.6

Q ss_pred             cEEEECCChHHHHHHHHHHhC--CCcEEEEEc-CcCCc----------cCcHHHHHHHHHhhhcCCeEE-cceEEEEEEE
Q psy14461        243 KTLVLGGSLMAVEIAATLNFL--GVPVTLVYS-RRLLK----------HFDQEMVRILLSSLTKAGVSI-QCCVIEKVIS  308 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~--g~~Vtlv~~-~~~l~----------~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~  308 (535)
                      +|+|||+|+.|+.+|..|++.  |.+||++++ +.+..          .....+.......+++.|+++ .++.+..   
T Consensus         3 kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---   79 (230)
T d1cjca2           3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEVGR---   79 (230)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSCTTCGGGGGHHHHHHHHHTSTTEEEEBSCCBTT---
T ss_pred             eEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCceehhhccccccccccchhhhhhhhhcCCeeEEeeEEeCc---
Confidence            799999999999999999875  679999999 76531          123345556667778889998 7776511   


Q ss_pred             eCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCC
Q psy14461        309 SFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFA  345 (535)
Q Consensus       309 ~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~  345 (535)
                         + +  .+      .+..-.+|.+++|+|..+...
T Consensus        80 ---~-~--~~------~~l~~~~d~v~~a~Ga~~~~~  104 (230)
T d1cjca2          80 ---D-V--TV------QELQDAYHAVVLSYGAEDKSR  104 (230)
T ss_dssp             ---T-B--CH------HHHHHHSSEEEECCCCCEECC
T ss_pred             ---c-c--cH------HHHHhhhceEEEEeecccccc
Confidence               1 1  11      101125899999999876543

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.86  E-value=7.6e-05  Score=61.21  Aligned_cols=86  Identities=15%  Similarity=0.138  Sum_probs=59.9

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRFC  168 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  168 (535)
                      .+++|||+|+.|+..|-.....+.+|||+|+.+.+      +|.+                      |.           
T Consensus        24 ~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~------l~~~----------------------d~-----------   64 (122)
T d1v59a2          24 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQI------GASM----------------------DG-----------   64 (122)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS------SSSS----------------------CH-----------
T ss_pred             CeEEEECCCchHHHHHHHHHhhCcceeEEEecccc------chhh----------------------hh-----------
Confidence            46899999999999998888889999999998865      2222                      11           


Q ss_pred             HHHHHHHHHHHHhcCcEEEEeEEEE-e----cCCEEEE--ce------eEEEcceEEEe
Q psy14461        169 IRAKNDSMRELKALGIDIVRTAAAF-T----NPHTIKL--SN------RSVTGFNFLLA  214 (535)
Q Consensus       169 ~~~~~~~~~~~~~~gV~~~~g~~~~-~----~~~~v~~--~~------~~~~~d~lViA  214 (535)
                       ++...+...+++.||+++.++... .    +...+.+  .+      .++.+|.|++|
T Consensus        65 -ei~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~~~~~ie~D~vlvA  122 (122)
T d1v59a2          65 -EVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVA  122 (122)
T ss_dssp             -HHHHHHHHHHHHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred             -hhHHHHHHHHHhccceEEeCCEEEEEEEeCCCcEEEEEEEeCCCCCeEEEEeCEEEEC
Confidence             122233467888999999886322 1    2334433  21      57899999987

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=97.85  E-value=5.2e-05  Score=62.03  Aligned_cols=88  Identities=13%  Similarity=0.134  Sum_probs=60.0

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRFC  168 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  168 (535)
                      .+++|+|+|..|+..|......+.+|+++++.+.+      ++.+                      +. .+        
T Consensus        23 ~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~------l~~~----------------------d~-~~--------   65 (121)
T d1mo9a2          23 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPL------KLIK----------------------DN-ET--------   65 (121)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTT------TTCC----------------------SH-HH--------
T ss_pred             CEEEEECCCHHHHHHHHHHHhcchhheEeeccchh------hccc----------------------cc-ch--------
Confidence            46799999999999998888889999999998754      1211                      11 11        


Q ss_pred             HHHHHHHHHHHHhcCcEEEEeEEE-Ee--cC-CE---EEE---c-eeEEEcceEEEeeC
Q psy14461        169 IRAKNDSMRELKALGIDIVRTAAA-FT--NP-HT---IKL---S-NRSVTGFNFLLAVE  216 (535)
Q Consensus       169 ~~~~~~~~~~~~~~gV~~~~g~~~-~~--~~-~~---v~~---~-~~~~~~d~lViATG  216 (535)
                         ...+.+.+++.||+++.++.. .+  ++ ..   +..   . +.++.+|.||+|+|
T Consensus        66 ---~~~~~~~l~~~gI~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~i~~D~Vi~a~G  121 (121)
T d1mo9a2          66 ---RAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLG  121 (121)
T ss_dssp             ---HHHHHHHHHHTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCC
T ss_pred             ---hhhhhhhhhccccEEEcCCEEEEEEecCCceEEEEEEEeCCCCEEEEcCEEEEEEC
Confidence               122346778889999987532 22  21 11   211   1 26799999999998

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=97.84  E-value=6.8e-05  Score=72.65  Aligned_cols=30  Identities=17%  Similarity=0.259  Sum_probs=28.7

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      .|+|||+|..|+-+|..+++.|.+|+|+++
T Consensus         9 DVlVVG~G~AGl~AAl~aa~~G~~V~lleK   38 (330)
T d1neka2           9 DAVVIGAGGAGMRAALQISQSGQTCALLSK   38 (330)
T ss_dssp             SCEEECCSHHHHHHHHHHHHTTCCCEEECS
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCeEEEEeC
Confidence            599999999999999999999999999986

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.82  E-value=8.8e-05  Score=60.34  Aligned_cols=87  Identities=18%  Similarity=0.112  Sum_probs=60.0

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRFC  168 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  168 (535)
                      .+++|||+|..|+..|......+.+|+|+++.+.+      ++.+                      |            
T Consensus        23 ~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~i------l~~~----------------------d------------   62 (117)
T d1onfa2          23 KKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRI------LRKF----------------------D------------   62 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSS------CTTS----------------------C------------
T ss_pred             CEEEEECCchHHHHHHHHHHhccccceeeehhccc------cccc----------------------c------------
Confidence            46899999999999998888889999999998865      2221                      1            


Q ss_pred             HHHHHHHHHHHHhcCcEEEEeE-EEEe---cCC--EEEEce-eEE-EcceEEEee
Q psy14461        169 IRAKNDSMRELKALGIDIVRTA-AAFT---NPH--TIKLSN-RSV-TGFNFLLAV  215 (535)
Q Consensus       169 ~~~~~~~~~~~~~~gV~~~~g~-~~~~---~~~--~v~~~~-~~~-~~d~lViAT  215 (535)
                      .++...+.+.+++.||+++.++ +..+   ++.  ++++++ ..+ .||.||+|.
T Consensus        63 ~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~v~~~~G~~~~~~D~Vi~AI  117 (117)
T d1onfa2          63 ESVINVLENDMKKNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCV  117 (117)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECC
T ss_pred             HHHHHHHHHHHHhCCCEEEECCEEEEEEEcCCCeEEEEECCCCEEEeCCEEEEeC
Confidence            1122233467888999999875 2222   233  354544 444 589999983

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=97.80  E-value=8.2e-05  Score=60.52  Aligned_cols=86  Identities=15%  Similarity=0.138  Sum_probs=57.4

Q ss_pred             EEEEeeCCccHHHHHHHHHh---hCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQ---TNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIK  165 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~---~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~  165 (535)
                      .+++|||+|+.|+..|....   ..+.+|+|+|+.+.+      +|.+                      |.        
T Consensus        21 ~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~i------L~~~----------------------d~--------   64 (117)
T d1aoga2          21 RRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMI------LRGF----------------------DH--------   64 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSS------STTS----------------------CH--------
T ss_pred             CeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchh------hccc----------------------ch--------
Confidence            36799999999998875322   334689999998855      2221                      11        


Q ss_pred             HHHHHHHHHHHHHHHhcCcEEEEeE-EEEe---cC--CEEEEce-eEEEcceEEEe
Q psy14461        166 RFCIRAKNDSMRELKALGIDIVRTA-AAFT---NP--HTIKLSN-RSVTGFNFLLA  214 (535)
Q Consensus       166 ~~~~~~~~~~~~~~~~~gV~~~~g~-~~~~---~~--~~v~~~~-~~~~~d~lViA  214 (535)
                          ++...+...+++.||+++.++ +..+   .+  .++++++ .++.+|.||+|
T Consensus        65 ----~~~~~l~~~l~~~GV~v~~~~~v~~ie~~~~~~~~v~~~~G~~i~~D~Vi~A  116 (117)
T d1aoga2          65 ----TLREELTKQLTANGIQILTKENPAKVELNADGSKSVTFESGKKMDFDLVMMA  116 (117)
T ss_dssp             ----HHHHHHHHHHHHTTCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEEC
T ss_pred             ----HHHHHHHHHHHhcCcEEEcCCEEEEEEEcCCCeEEEEECCCcEEEeCEEEEe
Confidence                122223467888999999886 3332   12  2455654 78999999998

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=97.79  E-value=4.3e-05  Score=69.22  Aligned_cols=33  Identities=21%  Similarity=0.247  Sum_probs=30.6

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcC
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRL  275 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~  275 (535)
                      .|+|||||+.|+++|..++++|.+|+++++ +.+
T Consensus         5 DvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~   38 (221)
T d1dxla1           5 DVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGAL   38 (221)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCC
Confidence            599999999999999999999999999998 554

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=97.76  E-value=5.3e-05  Score=73.56  Aligned_cols=37  Identities=16%  Similarity=0.006  Sum_probs=30.1

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhC--CCeEEEEecCCccc
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTN--QRRDELQERGSHLS  124 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~--~~~V~lie~~~~~~  124 (535)
                      +.+|+|||+|++|+.+|..++..  ..+|+||||.+.++
T Consensus         4 ~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iG   42 (335)
T d2gv8a1           4 IRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPG   42 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSS
T ss_pred             CCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCC
Confidence            35789999999999998765443  36999999998765

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=97.76  E-value=2e-05  Score=69.56  Aligned_cols=100  Identities=10%  Similarity=-0.001  Sum_probs=58.9

Q ss_pred             EEeeCCccHHHHHHHHHhhCCC--eEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHHH
Q psy14461         91 LDRIGDEGILLEEELKRQTNQR--RDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRFC  168 (535)
Q Consensus        91 v~iiG~G~aG~~~al~~~~~~~--~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  168 (535)
                      |+|||+|++|+.+|......+.  +++++++.....|....+...   +...              ...           
T Consensus         6 VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~~~~~~~~~l~~~---~~~~--------------~~~-----------   57 (183)
T d1d7ya1           6 VVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKD---FMAH--------------GDA-----------   57 (183)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSGGGGTT---HHHH--------------CCG-----------
T ss_pred             EEEECccHHHHHHHHHHHhcCCceEEEEEecccccchhhHHHhhh---hhhh--------------hhh-----------
Confidence            6999999999998866555444  455555554443433222211   0000              000           


Q ss_pred             HHHHHHHHHHHHhcCcEEEEeE-EEEe--cCCEEEEce-eEEEcceEEEeeCceecC
Q psy14461        169 IRAKNDSMRELKALGIDIVRTA-AAFT--NPHTIKLSN-RSVTGFNFLLAVERRCLP  221 (535)
Q Consensus       169 ~~~~~~~~~~~~~~gV~~~~g~-~~~~--~~~~v~~~~-~~~~~d~lViATGs~p~~  221 (535)
                      ..+.   .......+|+++.+. +..+  +...+.+.+ +++.||.||+|||..|+.
T Consensus        58 ~~~~---~~~~~~~~i~~~~~~~v~~i~~~~~~~~~~~g~~~~~D~vi~a~G~~p~~  111 (183)
T d1d7ya1          58 EKIR---LDCKRAPEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRA  111 (183)
T ss_dssp             GGSB---CCGGGSTTCEEEETCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECC
T ss_pred             hhHH---HHHhhcCCeEEEEeccccccccccceeEecCCcEeeeeeEEEEEEEEccc
Confidence            0000   122345689988874 3333  445677654 789999999999999976

>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.75  E-value=1.1e-05  Score=64.98  Aligned_cols=63  Identities=14%  Similarity=0.180  Sum_probs=48.7

Q ss_pred             hhHHHHhhhcCCcEEEEeC-----CCchhhHHHHHHHHHhcCCcceEEEEEeeCCccHHHHHHHHHhhCCCeE
Q psy14461         47 PPAYISRLSYENRILIFTH-----AVLREENARAERYLNARGDRFAVLYLDRIGDEGILLEEELKRQTNQRRD  114 (535)
Q Consensus        47 l~~~~~~~i~~~~v~v~~k-----~~cp~~~~~~k~~~~~~~~~~~~~~v~iiG~G~aG~~~al~~~~~~~~V  114 (535)
                      ...+++.++++++|++|+|     ++|| ||.++|+++.+.+.++..+++.   ..+. +...+...++..+|
T Consensus         4 ~~~~i~~~i~~~~VvvF~Kgt~~~p~Cp-~c~~ak~lL~~~~i~~~~~~v~---~~~~-~~~~l~~~t~~~Tv   71 (109)
T d1wika_           4 GSSGLKVLTNKASVMLFMKGNKQEAKCG-FSKQILEILNSTGVEYETFDIL---EDEE-VRQGLKTFSNWPTY   71 (109)
T ss_dssp             SCCCHHHHHTTSSEEEEESSTTTCCCSS-THHHHHHHHHHTCSCEEEEESS---SCHH-HHHHHHHHHSCCSS
T ss_pred             HHHHHHHHHhcCCEEEEeCCCCCCCCCh-HHHHHHHHHHhcCCCceEEEec---ccHH-HHHHHHHhcCCCCC
Confidence            3457788999999999998     7799 9999999999999887665543   4344 66777776665444

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.74  E-value=0.00011  Score=60.18  Aligned_cols=87  Identities=17%  Similarity=0.044  Sum_probs=58.1

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRFC  168 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  168 (535)
                      .+++|||+|+.|+..|......+.+|+|+++++.+       +.+                      |.           
T Consensus        21 ~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~~~l-------~~~----------------------D~-----------   60 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFLAGIGLDVTVMVRSILL-------RGF----------------------DQ-----------   60 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS-------TTS----------------------CH-----------
T ss_pred             CeEEEECCCccHHHHHHHHhhcCCeEEEEEechhh-------ccC----------------------CH-----------
Confidence            35799999999999998777888999999976422       221                      11           


Q ss_pred             HHHHHHHHHHHHhcCcEEEEeEEE-E---ec---CCEEEE--ce------eEEEcceEEEeeC
Q psy14461        169 IRAKNDSMRELKALGIDIVRTAAA-F---TN---PHTIKL--SN------RSVTGFNFLLAVE  216 (535)
Q Consensus       169 ~~~~~~~~~~~~~~gV~~~~g~~~-~---~~---~~~v~~--~~------~~~~~d~lViATG  216 (535)
                       ++...+...+++.||+++.++.. .   .+   ...+.+  ..      ..+.+|.|++|+|
T Consensus        61 -~~~~~l~~~l~~~Gv~i~~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~vl~AiG  122 (122)
T d1h6va2          61 -DMANKIGEHMEEHGIKFIRQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVG  122 (122)
T ss_dssp             -HHHHHHHHHHHHTTEEEEESCEEEEEEEEECSTTCEEEEEEECTTSCEEEEEEESEEECCCC
T ss_pred             -HHHHHHHHHHHHCCCEEEECCEEEEEEEecCCCccEEEEEEEECCCCcEEEEECCEEEEEeC
Confidence             12223346788899999988522 1   11   122332  21      3567999999998

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=97.63  E-value=7.6e-05  Score=59.68  Aligned_cols=87  Identities=10%  Similarity=-0.032  Sum_probs=56.9

Q ss_pred             eechhhHHhc-cCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEEcceEEEE
Q psy14461        228 LISADDLFRL-GAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSIQCCVIEK  305 (535)
Q Consensus       228 v~~~~~~~~~-~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i~~~~v~~  305 (535)
                      ++++.++..- .-.+|+|+|||+|.+|+++|..|++.+.+|+++.+ +....              ...++.. ...+.+
T Consensus        18 i~Hs~~y~~~~~f~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~~~~~--------------~~~~~~~-~~~i~~   82 (107)
T d2gv8a2          18 VLHSSLFREPELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGDI--------------QNESLQQ-VPEITK   82 (107)
T ss_dssp             EEEGGGCCCGGGGTTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCCSC--------------BCSSEEE-ECCEEE
T ss_pred             EEECCcCcchhhcCCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecCcccc--------------cccccee-cCCeeE
Confidence            4444444322 23469999999999999999999999999888877 43322              1122333 223556


Q ss_pred             EEEeCCCcEEEEEecCCCCCceEEE-cCEEEEc
Q psy14461        306 VISSFDGMKGVRGFHPESKEPFADV-FKTVVNA  337 (535)
Q Consensus       306 i~~~~~~~~~v~~~~~~~G~~~~~~-~D~vi~a  337 (535)
                      ++..   ...+.+.   ||+  .++ .|.||+|
T Consensus        83 ~~~~---~~~v~~~---dG~--~~~~vD~Ii~C  107 (107)
T d2gv8a2          83 FDPT---TREIYLK---GGK--VLSNIDRVIYC  107 (107)
T ss_dssp             EETT---TTEEEET---TTE--EECCCSEEEEC
T ss_pred             EecC---CCEEEEc---CCC--EEeCCCEEEEC
Confidence            6543   2356773   787  565 7999986

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=97.62  E-value=8.5e-05  Score=67.05  Aligned_cols=30  Identities=13%  Similarity=0.263  Sum_probs=28.9

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      .|+|||+|+.|+++|..++++|.+|+++++
T Consensus         4 DvvVIG~G~aG~~aA~~a~~~G~kV~iiE~   33 (217)
T d1gesa1           4 DYIAIGGGSGGIASINRAAMYGQKCALIEA   33 (217)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEEES
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEec
Confidence            489999999999999999999999999997

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=97.62  E-value=0.00013  Score=59.84  Aligned_cols=86  Identities=14%  Similarity=0.024  Sum_probs=59.6

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHHH
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRFC  168 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  168 (535)
                      .+++|||+|..|+..|-.....+.+|||+++++.+      +|..                      +. ++.       
T Consensus        26 ~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~------l~~~----------------------d~-~~~-------   69 (123)
T d1dxla2          26 KKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEI------VPTM----------------------DA-EIR-------   69 (123)
T ss_dssp             SEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSS------STTS----------------------CH-HHH-------
T ss_pred             CeEEEEccchHHHHHHHHHHhcCCeEEEEEEcccc------Cchh----------------------hh-cch-------
Confidence            46799999999999998777888999999998865      2221                      11 122       


Q ss_pred             HHHHHHHHHHHHhcCcEEEEeEEE-Eec--CC--EEEEc---e---eEEEcceEEEe
Q psy14461        169 IRAKNDSMRELKALGIDIVRTAAA-FTN--PH--TIKLS---N---RSVTGFNFLLA  214 (535)
Q Consensus       169 ~~~~~~~~~~~~~~gV~~~~g~~~-~~~--~~--~v~~~---~---~~~~~d~lViA  214 (535)
                          ..+...+++.||+++.++.. .+.  +.  ++.+.   +   ..+.+|.|++|
T Consensus        70 ----~~l~~~l~~~GI~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vLvA  122 (123)
T d1dxla2          70 ----KQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVS  122 (123)
T ss_dssp             ----HHHHHHHHHSSCCEECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECC
T ss_pred             ----hhhhhhhhcccceEEcCCceEEEEEccCeEEEEEEECCCCeEEEEEcCEEEEc
Confidence                22346788899999988733 232  22  34442   1   56899999988

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=97.62  E-value=0.00015  Score=68.03  Aligned_cols=35  Identities=6%  Similarity=-0.017  Sum_probs=31.9

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCc
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSH  122 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~  122 (535)
                      -+||+|||+|.+|+++|..+...+.+|+|+|+.+.
T Consensus         3 ~yDvvIIGaGi~Gls~A~~La~~G~~V~viE~~~~   37 (281)
T d2gf3a1           3 HFDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDP   37 (281)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            37899999999999999999999999999999753

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.60  E-value=5.5e-06  Score=76.49  Aligned_cols=143  Identities=13%  Similarity=0.052  Sum_probs=80.1

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCc-----------HHHHHHHHHhhhcCCeEEcceEEEEE
Q psy14461        239 AWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFD-----------QEMVRILLSSLTKAGVSIQCCVIEKV  306 (535)
Q Consensus       239 ~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~-----------~~~~~~~~~~l~~~gV~i~~~~v~~i  306 (535)
                      ..+++|+|||||+.|+.+|..|+++|.+|+++++ +.+...+.           ..........+.+.+.......   +
T Consensus        47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~  123 (233)
T d1djqa3          47 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAALPGLGEWSYHRDYRETQITKLLKKNKESQ---L  123 (233)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHHTTSTTCGGGGHHHHHHHHHHHHHHTTCTTCE---E
T ss_pred             cCCceEEEEcccHHHHHHHHHHHHhccceeeEeeccccCCccccccccceeecccccchhHHHHHHHHhhcceeee---e
Confidence            4578999999999999999999999999999998 66533211           1112222222222111110111   1


Q ss_pred             EEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCC
Q psy14461        307 ISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKP  386 (535)
Q Consensus       307 ~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~  386 (535)
                      ... ..  .+..+   +..  ++.+|.+++|||..+.........      ..+ ...    .....+++..++..  ..
T Consensus       124 ~~~-~~--~~~~~---~~~--~~~~d~vviAtG~~~~~~~~~~~~------~~~-~~~----~~~~~~~~~~~~~~--~~  182 (233)
T d1djqa3         124 ALG-QK--PMTAD---DVL--QYGADKVIIATGASECTLWNELKA------RES-EWA----ENDIKGIYLIGDAE--AP  182 (233)
T ss_dssp             ECS-CC--CCCHH---HHH--TSCCSEEEECCCEECCHHHHHHHH------TTH-HHH----HTTCCEEEECGGGT--SC
T ss_pred             ecc-cc--cccch---hhh--hhccceeeeccCCCcccccccccc------ccc-ccc----hhhhhhhhhccccC--Cc
Confidence            100 00  01111   122  467999999999887654321111      011 110    12345677777653  45


Q ss_pred             CcHHHHHHHHHHHHHHHhC
Q psy14461        387 NNASMAAISARLIIERLYG  405 (535)
Q Consensus       387 ~~~~~A~~~g~~aa~~i~g  405 (535)
                      -.+.-+-..|.-+|..+..
T Consensus       183 vvViGgG~~g~e~A~~l~~  201 (233)
T d1djqa3         183 RLIADATFTGHRVAREIEE  201 (233)
T ss_dssp             CCHHHHHHHHHHHHHTTTS
T ss_pred             eeEecCchHHHHHHHHHHh
Confidence            5666677777777777764

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.58  E-value=0.00011  Score=67.22  Aligned_cols=102  Identities=14%  Similarity=0.058  Sum_probs=64.9

Q ss_pred             cEEEECCChHHHHHHHHHHhCC---CcEEEEEcCcCC---------------------------cc-----------Cc-
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLG---VPVTLVYSRRLL---------------------------KH-----------FD-  280 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g---~~Vtlv~~~~~l---------------------------~~-----------~~-  280 (535)
                      +|+|||||+.|+.+|..++++|   .+|+++++..+-                           +.           ++ 
T Consensus         3 ~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~~GG~cln~GciPsK~ll~~a~~~~~~~~~~~~G~~i~~~~~~~d~   82 (233)
T d1xdia1           3 RIVILGGGPAGYEAALVAATSHPETTQVTVIDCDGIGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFHIDFDDAKISL   82 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTBC------CBCH
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCCCCceeecccccccEEEEeecchhhhhhhhhhcCCcccccCceeee
Confidence            7999999999999999888765   579999873211                           00           00 


Q ss_pred             H-----------HHHHHHHHhhhcCCeEE-cceEEEEEEEe-CCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCC
Q psy14461        281 Q-----------EMVRILLSSLTKAGVSI-QCCVIEKVISS-FDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAA  346 (535)
Q Consensus       281 ~-----------~~~~~~~~~l~~~gV~i-~~~~v~~i~~~-~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~  346 (535)
                      +           .....+...++..||++ .+.... +... ......+.... .+|+..++++|.+++|+|.+|....
T Consensus        83 ~~~~~~~~~v~~~~~~~~~~~~~~~gV~vi~G~~~~-~~~~~~~~~~~v~v~~-~dg~~~~i~ad~viiAtG~~p~~~~  159 (233)
T d1xdia1          83 PQIHARVKTLAAAQSADITAQLLSMGVQVIAGRGEL-IDSTPGLARHRIKATA-ADGSTSEHEADVVLVATGASPRILP  159 (233)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEE-CCSSSCCSSEEEEEEC-TTSCEEEEEESEEEECCCEEECCCG
T ss_pred             eeeccccceeeeeeecceehhhcccceeEEECcccc-cccccccccceEEEEe-cCCceeeeecceeeeecCccccccc
Confidence            0           11122455677889998 654321 1111 01112333332 4788788999999999999998654

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=97.54  E-value=0.00024  Score=64.52  Aligned_cols=54  Identities=6%  Similarity=-0.027  Sum_probs=42.6

Q ss_pred             ecC-CCCC-----CceechhhHH-hc-cCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        219 CLP-EPRN-----SALISADDLF-RL-GAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       219 p~~-~i~G-----~~v~~~~~~~-~~-~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      |+. .+||     ..++++.++. .. .-.+|+|+|||+|.+|+++|..+++.+.+++++.+
T Consensus         2 P~iP~~pG~e~F~G~v~HS~~~~~~~~~~~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~   63 (235)
T d1w4xa2           2 PQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQR   63 (235)
T ss_dssp             CCCCCCTTGGGCCSEEEEGGGCCSSCCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEES
T ss_pred             CCCCCCCChhhCCCcEEecCcCCCCCCCCCCCEEEEECCCccHHHHHHHHHhhhcccccccc
Confidence            556 7888     2466666663 22 23579999999999999999999999999988876

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.54  E-value=1.6e-05  Score=76.62  Aligned_cols=35  Identities=11%  Similarity=0.132  Sum_probs=30.7

Q ss_pred             CCcEEEECCChHHHHHHHHHHhC--CCcEEEEEc-CcC
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFL--GVPVTLVYS-RRL  275 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~--g~~Vtlv~~-~~~  275 (535)
                      ..+|+|||+|+.|+.+|..|+++  |.+|+++++ +.+
T Consensus        50 ~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~   87 (311)
T d2gjca1          50 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAP   87 (311)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Confidence            46799999999999999999864  899999998 654

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.52  E-value=0.0002  Score=65.27  Aligned_cols=98  Identities=9%  Similarity=0.005  Sum_probs=66.1

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCc--------------------------------------------
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLK--------------------------------------------  277 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~--------------------------------------------  277 (535)
                      .|+|||+|+.|+.+|..++++|.+|.++++ +....                                            
T Consensus         5 DviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~~~~~~~~~~GG~c~~~g~~~~k~l~~~~~~~~~~~~~~~~gi~~~~~   84 (235)
T d1h6va1           5 DLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTPLGTNWGLGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWKLEDT   84 (235)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGCCCEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTTTTBCCCSC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccccccccccccccchhhhhhhhhhhhHhhhhhccccccccc
Confidence            589999999999999999999999999996 32100                                            


Q ss_pred             -cCc------------HHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCC
Q psy14461        278 -HFD------------QEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFD  343 (535)
Q Consensus       278 -~~~------------~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~  343 (535)
                       ..+            ..+.+.+...+++++|++ .+...  +..  .+...+..   .+++...+.++.+++++|.+|.
T Consensus        85 ~~~d~~~~~~~~~~~i~~l~~g~~~~l~~~~V~vi~G~~~--~~~--~~~~~v~~---~~~~~~~i~a~~ivi~~G~~p~  157 (235)
T d1h6va1          85 VKHDWEKMTESVQNHIGSLNWGYRVALREKKVVYENAYGK--FIG--PHKIMATN---NKGKEKVYSAERFLIATGERPR  157 (235)
T ss_dssp             CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEECCEEE--EEE--TTEEEEEC---TTSCEEEEEEEEEEECCCEEEC
T ss_pred             eeechhhhhheeeeeeeeccchhhhhhhccCceEEEeEEe--ecc--ccceeccc---ccccccccccccceeecCCCce
Confidence             000            011222344566778888 65433  221  23334443   3677678999999999999998


Q ss_pred             CCCC
Q psy14461        344 FAAL  347 (535)
Q Consensus       344 ~~~l  347 (535)
                      ...+
T Consensus       158 ~~~i  161 (235)
T d1h6va1         158 YLGI  161 (235)
T ss_dssp             CCSS
T ss_pred             eEEE
Confidence            6543

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.46  E-value=0.0005  Score=67.75  Aligned_cols=158  Identities=14%  Similarity=0.121  Sum_probs=94.9

Q ss_pred             cEEEECCChHHHHHHHHHHh------CCCcEEEEEc-CcCCcc------Cc-----------------------------
Q psy14461        243 KTLVLGGSLMAVEIAATLNF------LGVPVTLVYS-RRLLKH------FD-----------------------------  280 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~------~g~~Vtlv~~-~~~l~~------~~-----------------------------  280 (535)
                      .|+|||||+.|+-+|..|++      .|.+|.|+++ ..+...      ++                             
T Consensus        34 DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG~k~~~Ggvl~~~~l~~l~p~~~~~~~~~~~~~~~~~~~~  113 (380)
T d2gmha1          34 DVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFPDWKEKGAPLNTPVTEDRFGI  113 (380)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHHHHCTTHHHHTCCCCEECCEEEEEE
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCCCCccccccccHHHHHHHccchhhhccccccceecceEEE
Confidence            79999999999999999997      7999999998 543110      11                             


Q ss_pred             ---------------------------HHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEec----CCCCC---
Q psy14461        281 ---------------------------QEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFH----PESKE---  325 (535)
Q Consensus       281 ---------------------------~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~----~~~G~---  325 (535)
                                                 ..+...+.+..+..|+.+ .+..+.++...+++.+......    ..++.   
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ae~~g~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~  193 (380)
T d2gmha1         114 LTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKT  193 (380)
T ss_dssp             ECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEEE
T ss_pred             eeccccccccccCchhcccccceeehhhHHHHHHHHHHhhccceeeeecceeeeeeccCCceeecccccccccccccccc
Confidence                                       223344555666788999 8888888876544433321110    01111   


Q ss_pred             ----ceEEEcCEEEEccCCCCCCCCCCccccCee--ecC-CCceEcCCCCCcCCCCEEEeCCcCCCCC-----CcHHHHH
Q psy14461        326 ----PFADVFKTVVNAMEKKFDFAALNLHHIGVD--IKK-KSYVVCNEKDQTSVGNIFAVGGIVHGKP-----NNASMAA  393 (535)
Q Consensus       326 ----~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~--~~~-~G~i~vd~~~~T~~~~IyA~GD~~~~~~-----~~~~~A~  393 (535)
                          .....++..+++.|.+.....--++...+.  ... .|+-   ..-+...|++..+||++ +..     .=++.|+
T Consensus       194 ~~~~~~~~~~~~~v~~~G~~G~l~k~li~~~~l~~~~~~~~G~~---sip~l~~~G~lLVGDAA-G~vnP~~g~GI~~Am  269 (380)
T d2gmha1         194 TFERGLELHAKVTIFAEGCHGHLAKQLYKKFDLRANCEPQGGFQ---SIPKLTFPGGLLIGCSP-GFMNVPKIKGTHTAM  269 (380)
T ss_dssp             EEECCCEEECSEEEECCCTTCHHHHHHHHHTTTTTTSCCCCGGG---GCCCCEETTEEECTTTT-CCCBTTTTBCHHHHH
T ss_pred             cccccccccccEEEEeeeCCCcchHHHHhhhhhccccccccccc---cccccccCCeeEEeccc-cccchhhcCCeeeee
Confidence                114557788888886543211000110000  000 1110   01123468999999998 532     2456899


Q ss_pred             HHHHHHHHHHh
Q psy14461        394 ISARLIIERLY  404 (535)
Q Consensus       394 ~~g~~aa~~i~  404 (535)
                      ..|+.||+.+.
T Consensus       270 ~SG~lAAeai~  280 (380)
T d2gmha1         270 KSGTLAAESIF  280 (380)
T ss_dssp             HHHHHHHHHHH
T ss_pred             ccHHHHHHHHH
Confidence            99999999986

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.45  E-value=0.00028  Score=63.65  Aligned_cols=30  Identities=20%  Similarity=0.241  Sum_probs=28.9

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      .|+|||||+.|+.+|..+++.|.+|.++++
T Consensus         5 DviIIGgGpAGl~aA~~aar~G~~V~viE~   34 (229)
T d3lada1           5 DVIVIGAGPGGYVAAIKSAQLGLKTALIEK   34 (229)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEEEC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEec
Confidence            599999999999999999999999999996

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.40  E-value=0.00025  Score=64.01  Aligned_cols=32  Identities=28%  Similarity=0.379  Sum_probs=30.0

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      ..+++|||+|+.|+++|..++++|.+|+|+++
T Consensus         5 ~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~   36 (220)
T d1lvla1           5 QTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEG   36 (220)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHTCCEEEECS
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCcEEEEec
Confidence            35799999999999999999999999999986

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.39  E-value=0.0035  Score=60.36  Aligned_cols=31  Identities=29%  Similarity=0.427  Sum_probs=27.0

Q ss_pred             CcEEEECCChHHHHHHHHHHh----CCCcEEEEEc
Q psy14461        242 GKTLVLGGSLMAVEIAATLNF----LGVPVTLVYS  272 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~----~g~~Vtlv~~  272 (535)
                      -.|+|||+|..|+-+|..+++    .|.+|.|+++
T Consensus        22 ~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK   56 (356)
T d1jnra2          22 TDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEK   56 (356)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECS
T ss_pred             cCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeC
Confidence            469999999999998888764    6899999986

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=97.28  E-value=0.00073  Score=63.91  Aligned_cols=32  Identities=13%  Similarity=-0.002  Sum_probs=28.3

Q ss_pred             EEEeeCCccHHHHHHHHHhhCC-CeEEEEecCC
Q psy14461         90 YLDRIGDEGILLEEELKRQTNQ-RRDELQERGS  121 (535)
Q Consensus        90 ~v~iiG~G~aG~~~al~~~~~~-~~V~lie~~~  121 (535)
                      +|+|||+|.+|+++|+.+...+ .+|+|+||++
T Consensus         3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~   35 (305)
T d1pj5a2           3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQGP   35 (305)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            5799999999999999887777 5799999985

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.28  E-value=0.0011  Score=59.28  Aligned_cols=95  Identities=20%  Similarity=0.112  Sum_probs=63.1

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEcCcCC------------------------------------ccCc-----
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLL------------------------------------KHFD-----  280 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~l------------------------------------~~~~-----  280 (535)
                      ..|+|||||+.|+++|..+++.|.+|+++++..+.                                    ..++     
T Consensus         4 ~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (223)
T d1ebda1           4 TETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGNLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAENVTIDFAKVQ   83 (223)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECCSCEECHHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCEEEEEecCCCCcceeccccccccccccccchhhhhhhhhhhcccchhheeeHHHHh
Confidence            46999999999999999999999999999872210                                    0000     


Q ss_pred             -------HHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCC
Q psy14461        281 -------QEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDF  344 (535)
Q Consensus       281 -------~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~  344 (535)
                             ..+...+...++..+|++ .+..  .+..  .....+..    .....++.+|.+++++|..|..
T Consensus        84 ~~~~~~v~~l~~~~~~~~~~~~V~~i~G~a--~f~~--~~~~~v~~----~~~~~~~~~~~iiIa~g~~p~~  147 (223)
T d1ebda1          84 EWKASVVKKLTGGVEGLLKGNKVEIVKGEA--YFVD--ANTVRVVN----GDSAQTYTFKNAIIATGSRPIE  147 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTCEEEESEE--EEEE--TTEEEEEE----TTEEEEEECSEEEECCCEEECC
T ss_pred             hHHHHHHHHHHhhHHHhhhccceeeeccEE--EEcc--Ccccceec----cccceEEecccEEEEcCCCccc
Confidence                   112233344566788888 6542  2332  23344444    2333489999999999988864

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=0.00096  Score=59.85  Aligned_cols=30  Identities=30%  Similarity=0.320  Sum_probs=28.7

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      .++|||+|+.|+++|..++++|.+|+++++
T Consensus         5 DviIIG~GpaG~~aA~~aar~G~kV~vIEk   34 (221)
T d3grsa1           5 DYLVIGGGSGGLASARRAAELGARAAVVES   34 (221)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEES
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEec
Confidence            489999999999999999999999999986

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=97.05  E-value=0.00016  Score=67.70  Aligned_cols=38  Identities=13%  Similarity=0.037  Sum_probs=34.5

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFR  126 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~  126 (535)
                      ++|+|||+|++|+.+|.++...+.+|+|+|+++.+++.
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~   38 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGA   38 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCce
Confidence            46899999999999999999999999999999988654

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.03  E-value=0.00019  Score=65.40  Aligned_cols=89  Identities=12%  Similarity=0.081  Sum_probs=63.5

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCC-------CcEEEEEc-CcCCc----------cCcHHHHHHHHHhhhcCCeEE-cce
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLG-------VPVTLVYS-RRLLK----------HFDQEMVRILLSSLTKAGVSI-QCC  301 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g-------~~Vtlv~~-~~~l~----------~~~~~~~~~~~~~l~~~gV~i-~~~  301 (535)
                      |.+|+|||+|++|+.+|..|+++|       .+||++++ +.+..          ....++.+.....+...|+++ +++
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~~~gi~p~~~~~~~~~~~~~~~~~~~g~~~~~~~   81 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFGNV   81 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTSTTEEEEESC
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCeeeeccCcccccchhhhhhhhhhhccCCceEEEEE
Confidence            578999999999999999999987       47999999 75532          123445566667778889999 886


Q ss_pred             EEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCC
Q psy14461        302 VIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDF  344 (535)
Q Consensus       302 ~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~  344 (535)
                      .+...         +      ..++....+|.+++++|..+..
T Consensus        82 ~v~~~---------~------~~~~~~~~~~~v~~atGa~~~~  109 (239)
T d1lqta2          82 VVGEH---------V------QPGELSERYDAVIYAVGAQSRG  109 (239)
T ss_dssp             CBTTT---------B------CHHHHHHHSSEEEECCCCCEEC
T ss_pred             Eeccc---------c------chhhhhccccceeeecCCCccc
Confidence            54210         0      1111134689999999986543

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.02  E-value=0.0002  Score=65.44  Aligned_cols=37  Identities=11%  Similarity=-0.032  Sum_probs=32.3

Q ss_pred             EEEeeCCccHHHHHHHHHhhCCC-eEEEEecCCccccc
Q psy14461         90 YLDRIGDEGILLEEELKRQTNQR-RDELQERGSHLSFR  126 (535)
Q Consensus        90 ~v~iiG~G~aG~~~al~~~~~~~-~V~lie~~~~~~~~  126 (535)
                      +|+|||+|++|+++|..+...+. +|+|+|+.+.+++.
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~~~GG~   39 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGR   39 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTT
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCCCCCce
Confidence            57999999999999999888884 79999999887654

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=97.01  E-value=0.00025  Score=66.47  Aligned_cols=37  Identities=14%  Similarity=-0.015  Sum_probs=33.8

Q ss_pred             EEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccc
Q psy14461         90 YLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFR  126 (535)
Q Consensus        90 ~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~  126 (535)
                      +|+|||+|++|+.+|.++...+.+|+|+|+++.+++.
T Consensus         3 kV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~   39 (373)
T d1seza1           3 RVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGK   39 (373)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCEEEEeCCCCCcCc
Confidence            4799999999999999999999999999999987654

>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli, Grx3 [TaxId: 562]

Probab=96.98  E-value=0.00089  Score=50.30  Aligned_cols=50  Identities=20%  Similarity=0.320  Sum_probs=37.0

Q ss_pred             cEEEEeCCCchhhHHHHHHHHHhcCCcceEEEEEeeCCccHHHHHHHHHhhCCCe
Q psy14461         59 RILIFTHAVLREENARAERYLNARGDRFAVLYLDRIGDEGILLEEELKRQTNQRR  113 (535)
Q Consensus        59 ~v~v~~k~~cp~~~~~~k~~~~~~~~~~~~~~v~iiG~G~aG~~~al~~~~~~~~  113 (535)
                      +|.||++++|| ||.++|.++.+.+.++..+++   ...+. ....+....+..+
T Consensus         2 ~I~iys~~~Cp-~C~~ak~~L~~~~i~y~~~di---~~~~~-~~~~~~~~~g~~t   51 (82)
T d1fova_           2 NVEIYTKETCP-YCHRAKALLSSKGVSFQELPI---DGNAA-KREEMIKRSGRTT   51 (82)
T ss_dssp             CEEEEECSSCH-HHHHHHHHHHHHTCCCEEEEC---TTCSH-HHHHHHHHHSSCC
T ss_pred             cEEEEeCCCCH-hHHHHHHHHHHcCCCeEEEec---cchHH-HHHHHHHHhCCCC
Confidence            48899999999 999999999999988765554   33355 5555655554443

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.93  E-value=0.00024  Score=64.41  Aligned_cols=39  Identities=5%  Similarity=-0.152  Sum_probs=35.3

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRK  127 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~  127 (535)
                      +||+|||+|.+|+.+|..+...+.+|+|+|+++++++..
T Consensus         6 yDviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~~GG~~   44 (297)
T d2bcgg1           6 YDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEA   44 (297)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGG
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCcce
Confidence            678999999999999999999999999999999886543

>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: C-terminal, Grx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=96.88  E-value=0.00042  Score=51.07  Aligned_cols=34  Identities=29%  Similarity=0.381  Sum_probs=29.4

Q ss_pred             CCcEEEEeCCCchhhHHHHHHHHHhcCCcceEEEE
Q psy14461         57 ENRILIFTHAVLREENARAERYLNARGDRFAVLYL   91 (535)
Q Consensus        57 ~~~v~v~~k~~cp~~~~~~k~~~~~~~~~~~~~~v   91 (535)
                      +++|.+|+++.|| +|.+|++++.+.+.++..+++
T Consensus         4 ~~~I~iYs~~~C~-~C~~ak~lL~~~~i~~~~~~v   37 (74)
T d1nm3a1           4 QESISIFTKPGCP-FCAKAKQLLHDKGLSFEEIIL   37 (74)
T ss_dssp             CCCEEEEECSSCH-HHHHHHHHHHHHTCCCEEEET
T ss_pred             cCcEEEEECCCCH-HHHHHHHHHHHcCCCeEEEEc
Confidence            3469999999999 999999999999988765554

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=96.81  E-value=0.00039  Score=66.14  Aligned_cols=39  Identities=10%  Similarity=-0.090  Sum_probs=35.0

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccc
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFR  126 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~  126 (535)
                      ..+|+|||+|++|+++|..+...+.+|+|+|+++.+++.
T Consensus        30 pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~~GG~   68 (370)
T d2iida1          30 PKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGR   68 (370)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTT
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCe
Confidence            357899999999999999998889999999999987654

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=96.77  E-value=0.0013  Score=57.09  Aligned_cols=32  Identities=9%  Similarity=0.055  Sum_probs=24.4

Q ss_pred             EEEeeCCccHHHHHHHHHhhCCCeEEEEecCC
Q psy14461         90 YLDRIGDEGILLEEELKRQTNQRRDELQERGS  121 (535)
Q Consensus        90 ~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~  121 (535)
                      +|+|||+|++|+..|......+.++++++..+
T Consensus         5 ~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~   36 (185)
T d1q1ra1           5 NVVIVGTGLAGVEVAFGLRASGWEGNIRLVGD   36 (185)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred             CEEEECCcHHHHHHHHHHHHcCCceEEEEecC
Confidence            57999999999998877666666666655544

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.73  E-value=0.0062  Score=51.36  Aligned_cols=29  Identities=7%  Similarity=-0.230  Sum_probs=26.2

Q ss_pred             CCccHHHHHHHHHhhCCCeEEEEecCCcc
Q psy14461         95 GDEGILLEEELKRQTNQRRDELQERGSHL  123 (535)
Q Consensus        95 G~G~aG~~~al~~~~~~~~V~lie~~~~~  123 (535)
                      |+|..|+..|......+.+|||+++.+.+
T Consensus        48 ggg~ig~e~A~~la~~G~~Vtlv~~~~~~   76 (156)
T d1djqa2          48 DTYFMAPSLAEKLATAGHEVTIVSGVHLA   76 (156)
T ss_dssp             CCSSHHHHHHHHHHHTTCEEEEEESSCTT
T ss_pred             CCChHHHHHHHHHHHcCCeEEEEecCCcc
Confidence            89999999999888999999999998754

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.73  E-value=0.00057  Score=64.90  Aligned_cols=38  Identities=18%  Similarity=-0.056  Sum_probs=34.5

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFR  126 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~  126 (535)
                      .+|+|||+|.+|+.||..+...+.+|+|+|+.+.++++
T Consensus         6 ~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~GGr   43 (449)
T d2dw4a2           6 GKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGR   43 (449)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTT
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCccc
Confidence            46899999999999999999999999999999988664

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=96.68  E-value=0.012  Score=54.47  Aligned_cols=101  Identities=16%  Similarity=0.115  Sum_probs=66.1

Q ss_pred             CCcEEEECCChHHHHHHHHHHh-CCCcEEEEEc-CcCCc----------c--Cc--------------------------
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNF-LGVPVTLVYS-RRLLK----------H--FD--------------------------  280 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~-~g~~Vtlv~~-~~~l~----------~--~~--------------------------  280 (535)
                      ...|+|||+|+.|+.+|..|++ .|.+|+++++ +.+-.          .  ..                          
T Consensus        33 e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~GG~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  112 (278)
T d1rp0a1          33 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHA  112 (278)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESCH
T ss_pred             CCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCCCceeecCEEcCHHHHhhhHHHHHHHcCCceecCCccceeccc
Confidence            3579999999999999999987 5999999998 64321          0  00                          


Q ss_pred             -HHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEE-EEEec---------CCCCCceEEEcCEEEEccCCCC
Q psy14461        281 -QEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKG-VRGFH---------PESKEPFADVFKTVVNAMEKKF  342 (535)
Q Consensus       281 -~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~-v~~~~---------~~~G~~~~~~~D~vi~a~G~~p  342 (535)
                       ..+...+.+.++..++.+ .++.+..+... ++++. +....         .......++.++.++.++|...
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~gv~~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~~  185 (278)
T d1rp0a1         113 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDG  185 (278)
T ss_dssp             HHHHHHHHHHHHTSTTEEEEETEEEEEEEEE-TTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSS
T ss_pred             HHHHHHHHHHHHHhCCCEEEeCCcceeeeec-CCeEEEEEeccceeeeeecccccccceeeccceEEECcCCCc
Confidence             122233344556678888 88888877655 34332 22110         0011224789999999999754

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.66  E-value=0.00067  Score=64.39  Aligned_cols=38  Identities=8%  Similarity=-0.068  Sum_probs=34.9

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFR  126 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~  126 (535)
                      .+++|||+|++|+.+|..+...+.+|+|+|+.+++++.
T Consensus         2 ~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iGG~   39 (298)
T d1i8ta1           2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGN   39 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGG
T ss_pred             ccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCcccc
Confidence            68999999999999999988888999999999998765

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.65  E-value=0.00058  Score=65.48  Aligned_cols=37  Identities=8%  Similarity=-0.103  Sum_probs=33.9

Q ss_pred             EEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccc
Q psy14461         90 YLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFR  126 (535)
Q Consensus        90 ~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~  126 (535)
                      ||+|||+|.+|+++|..+...+.+|+|+|+.+.+++.
T Consensus         1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~~~GGr   37 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGR   37 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHHTTCCEEEEESSSSSBTT
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcce
Confidence            5799999999999999999999999999999988654

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.64  E-value=0.0006  Score=67.17  Aligned_cols=41  Identities=15%  Similarity=0.113  Sum_probs=34.7

Q ss_pred             eEEEEEeeCCccHHHHHHHHHhh------CCCeEEEEecCCcccccc
Q psy14461         87 AVLYLDRIGDEGILLEEELKRQT------NQRRDELQERGSHLSFRK  127 (535)
Q Consensus        87 ~~~~v~iiG~G~aG~~~al~~~~------~~~~V~lie~~~~~~~~~  127 (535)
                      ..+||+|||+||||+++|+.++.      .+.+|+|+||+.+++...
T Consensus        31 ~e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG~k~   77 (380)
T d2gmha1          31 EEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHT   77 (380)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTC
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCCCCc
Confidence            45789999999999999987764      789999999998775543

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=96.54  E-value=0.0012  Score=62.49  Aligned_cols=39  Identities=10%  Similarity=0.142  Sum_probs=35.0

Q ss_pred             ceEEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccc
Q psy14461         86 FAVLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLS  124 (535)
Q Consensus        86 ~~~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~  124 (535)
                      .+.+||+|||+|.+|+.+|+.+...+.+|+|+||.+..+
T Consensus        14 ~e~~DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~~g   52 (308)
T d1y0pa2          14 HDTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIG   52 (308)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence            346899999999999999999999999999999998654

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.52  E-value=0.00088  Score=63.51  Aligned_cols=36  Identities=28%  Similarity=0.500  Sum_probs=32.9

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcC
Q psy14461        240 WPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRL  275 (535)
Q Consensus       240 ~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~  275 (535)
                      ...+|+|||+|..|+-+|..|++.|.+|+|+|+ +++
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~   40 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRV   40 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence            346799999999999999999999999999998 765

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=96.41  E-value=0.0011  Score=60.89  Aligned_cols=34  Identities=15%  Similarity=0.065  Sum_probs=30.9

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSH  122 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~  122 (535)
                      .+|+|||+|++|+.+|+.+...+.+|+||||.+.
T Consensus         5 ~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~   38 (265)
T d2voua1           5 DRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ   38 (265)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            4689999999999999999899999999999764

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=96.40  E-value=0.0012  Score=60.22  Aligned_cols=32  Identities=22%  Similarity=0.347  Sum_probs=30.6

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      .++|+|||+|.+|+-+|..|+++|.+|+|+++
T Consensus         6 ~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier   37 (268)
T d1c0pa1           6 QKRVVVLGSGVIGLSSALILARKGYSVHILAR   37 (268)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCcEEEECccHHHHHHHHHHHHCCCCEEEEeC
Confidence            47899999999999999999999999999998

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=96.38  E-value=0.0014  Score=62.61  Aligned_cols=38  Identities=5%  Similarity=-0.103  Sum_probs=34.3

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFR  126 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~  126 (535)
                      .+|+|||+|.+|+.+|..+...+.+|+|+|+.+++++.
T Consensus         3 KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iGG~   40 (314)
T d2bi7a1           3 KKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGN   40 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGG
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCcCe
Confidence            35799999999999999888888999999999998765

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=96.35  E-value=0.00099  Score=63.90  Aligned_cols=37  Identities=11%  Similarity=-0.181  Sum_probs=33.5

Q ss_pred             eEEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcc
Q psy14461         87 AVLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHL  123 (535)
Q Consensus        87 ~~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~  123 (535)
                      +..||+|||+|++|+.+|+.+...+.+|+|+||.+..
T Consensus         4 ~~~DVvVIG~G~AGl~AAl~aa~~G~~V~liEK~~~~   40 (336)
T d2bs2a2           4 QYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVK   40 (336)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHTTTCCEEEECSSCGG
T ss_pred             eecCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCC
Confidence            4578999999999999999999999999999998754

>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Escherichia coli [TaxId: 562]

Probab=96.33  E-value=0.0015  Score=48.19  Aligned_cols=32  Identities=25%  Similarity=0.391  Sum_probs=27.8

Q ss_pred             cEEEEeCCCchhhHHHHHHHHHhcCCcceEEEE
Q psy14461         59 RILIFTHAVLREENARAERYLNARGDRFAVLYL   91 (535)
Q Consensus        59 ~v~v~~k~~cp~~~~~~k~~~~~~~~~~~~~~v   91 (535)
                      +|.+|+++.|| +|.++++++.+.+.+++.+++
T Consensus         2 ki~iYs~~~C~-~C~~ak~~L~~~~i~y~~~~i   33 (76)
T d1h75a_           2 RITIYTRNDCV-QCHATKRAMENRGFDFEMINV   33 (76)
T ss_dssp             CEEEEECTTCH-HHHHHHHHHHHTTCCCEEEET
T ss_pred             EEEEEeCCCCc-cHHHHHHHHHhcCceeEEEee
Confidence            47899999999 999999999999988765543

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=96.33  E-value=0.0014  Score=62.55  Aligned_cols=37  Identities=19%  Similarity=0.250  Sum_probs=34.1

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCc
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLK  277 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~  277 (535)
                      .|+|+|||||.+|+-+|..|++.|.+|+|+++ +++..
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iGG   39 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGG   39 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSG
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCcC
Confidence            47899999999999999999999999999999 77754

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=96.32  E-value=0.0017  Score=60.69  Aligned_cols=40  Identities=10%  Similarity=0.003  Sum_probs=34.1

Q ss_pred             ceEEEEEeeCCccHHHHHHHHHhh-CCCeEEEEecCCcccc
Q psy14461         86 FAVLYLDRIGDEGILLEEELKRQT-NQRRDELQERGSHLSF  125 (535)
Q Consensus        86 ~~~~~v~iiG~G~aG~~~al~~~~-~~~~V~lie~~~~~~~  125 (535)
                      +.-.||+|||+|++|+.+|+.+.. .+.+|+|+|+.+.+++
T Consensus        31 ~~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~GG   71 (278)
T d1rp0a1          31 YAETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGG   71 (278)
T ss_dssp             HTEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCT
T ss_pred             ccCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCCC
Confidence            345889999999999999998765 5999999999987654

>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Corynebacterium ammoniagenes [TaxId: 1697]

Probab=96.32  E-value=0.0016  Score=47.80  Aligned_cols=32  Identities=13%  Similarity=0.274  Sum_probs=28.0

Q ss_pred             cEEEEeCCCchhhHHHHHHHHHhcCCcceEEEE
Q psy14461         59 RILIFTHAVLREENARAERYLNARGDRFAVLYL   91 (535)
Q Consensus        59 ~v~v~~k~~cp~~~~~~k~~~~~~~~~~~~~~v   91 (535)
                      +|.+|+++.|| +|.+++.++.+.|.+++.+++
T Consensus         2 ~v~iYt~~~C~-~C~~ak~~L~~~~i~~~~~~i   33 (74)
T d1r7ha_           2 SITLYTKPACV-QCTATKKALDRAGLAYNTVDI   33 (74)
T ss_dssp             CEEEEECTTCH-HHHHHHHHHHHTTCCCEEEET
T ss_pred             EEEEEeCCCCh-hHHHHHHHHHHcCCceEEEEc
Confidence            47899999999 999999999999988765554

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.28  E-value=0.0015  Score=58.80  Aligned_cols=34  Identities=18%  Similarity=0.208  Sum_probs=31.6

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL  276 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l  276 (535)
                      .|+|||+|..|+-+|..|++.|.+|+|+++ +.+.
T Consensus         7 DviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~~G   41 (297)
T d2bcgg1           7 DVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYG   41 (297)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCC
Confidence            599999999999999999999999999999 7664

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.23  E-value=0.0034  Score=56.39  Aligned_cols=33  Identities=21%  Similarity=0.289  Sum_probs=30.7

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcC
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRL  275 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~  275 (535)
                      .|+|||+|+.|+.+|..++++|.+|+++++ +.+
T Consensus         7 DviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~~   40 (233)
T d1v59a1           7 DVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKL   40 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCc
Confidence            589999999999999999999999999998 654

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.20  E-value=0.0019  Score=59.66  Aligned_cols=36  Identities=17%  Similarity=0.005  Sum_probs=31.6

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCC-CeEEEEecCCccc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQ-RRDELQERGSHLS  124 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~-~~V~lie~~~~~~  124 (535)
                      ++|+|||+|++|+.+|+.+...+ .+|+|+|+.+.+.
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~~   38 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIR   38 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCCC
Confidence            57999999999999999888888 5999999988643

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=96.19  E-value=0.0018  Score=58.98  Aligned_cols=33  Identities=15%  Similarity=0.016  Sum_probs=30.6

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCC
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGS  121 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~  121 (535)
                      .+|+|||+|.+|+++|+.+...+.+|+|+||+.
T Consensus         7 ~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~   39 (268)
T d1c0pa1           7 KRVVVLGSGVIGLSSALILARKGYSVHILARDL   39 (268)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            368999999999999999999999999999976

>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli [TaxId: 562]

Probab=96.15  E-value=0.00079  Score=51.02  Aligned_cols=25  Identities=16%  Similarity=0.161  Sum_probs=22.6

Q ss_pred             cEEEEeCCCchhhHHHHHHHHHhcCC
Q psy14461         59 RILIFTHAVLREENARAERYLNARGD   84 (535)
Q Consensus        59 ~v~v~~k~~cp~~~~~~k~~~~~~~~   84 (535)
                      +|++|+++.|| ||.++|+++.+.+.
T Consensus         2 kvviysk~~Cp-~C~~aK~ll~~~~~   26 (85)
T d1egoa_           2 QTVIFGRSGCP-YCVRAKDLAEKLSN   26 (85)
T ss_dssp             EEEEECCTTST-HHHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCH-hHHHHHHHHHHcCC
Confidence            58899999999 99999999998763

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=96.12  E-value=0.0026  Score=60.94  Aligned_cols=40  Identities=8%  Similarity=-0.026  Sum_probs=33.2

Q ss_pred             eEEEEEeeCCccHHHHHHHHHh-----hCCCeEEEEecCCccccc
Q psy14461         87 AVLYLDRIGDEGILLEEELKRQ-----TNQRRDELQERGSHLSFR  126 (535)
Q Consensus        87 ~~~~v~iiG~G~aG~~~al~~~-----~~~~~V~lie~~~~~~~~  126 (535)
                      ..+||+|||+|++|+.+|+.+.     ..+.+|+|||+.+.+...
T Consensus         6 ~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~~~~   50 (360)
T d1pn0a1           6 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYN   50 (360)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCCCS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCCCcC
Confidence            3589999999999999998763     578999999998865444

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=96.01  E-value=0.023  Score=45.94  Aligned_cols=34  Identities=21%  Similarity=0.172  Sum_probs=30.1

Q ss_pred             EEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcc
Q psy14461         90 YLDRIGDEGILLEEELKRQTNQRRDELQERGSHL  123 (535)
Q Consensus        90 ~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~  123 (535)
                      +|+|+|+|..++..|+.+.....+|+|+-|.+.+
T Consensus        29 ~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~   62 (126)
T d1trba2          29 KVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGF   62 (126)
T ss_dssp             EEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred             EEEEECCCHHHHHHHHHHhhcCCcEEEEeecccc
Confidence            5699999999999999998888999999987743

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=95.91  E-value=0.0031  Score=60.01  Aligned_cols=38  Identities=8%  Similarity=0.038  Sum_probs=34.6

Q ss_pred             eEEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccc
Q psy14461         87 AVLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLS  124 (535)
Q Consensus        87 ~~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~  124 (535)
                      +..||+|||+|++|+.+|+.+...+.+|+|+||.+..+
T Consensus        18 e~~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~~~g   55 (317)
T d1qo8a2          18 ETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSG   55 (317)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSC
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCC
Confidence            46899999999999999999999999999999998653

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=95.89  E-value=0.0025  Score=60.72  Aligned_cols=38  Identities=16%  Similarity=0.093  Sum_probs=34.1

Q ss_pred             eEEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccc
Q psy14461         87 AVLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLS  124 (535)
Q Consensus        87 ~~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~  124 (535)
                      +..||+|||+|++|+.+|+.+...+.+|+|+||.+..+
T Consensus        22 et~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~~g   59 (322)
T d1d4ca2          22 ETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPG   59 (322)
T ss_dssp             EECSEEEECSSHHHHHHHHHHHTTTCCEEEECSSSSSC
T ss_pred             CcceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCC
Confidence            35789999999999999999999999999999987653

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.85  E-value=0.015  Score=49.00  Aligned_cols=41  Identities=7%  Similarity=0.167  Sum_probs=28.5

Q ss_pred             HHHHhcCcEEEEeE-EEEecCCEEEE--ce--eEEEcceEEEeeCc
Q psy14461        177 RELKALGIDIVRTA-AAFTNPHTIKL--SN--RSVTGFNFLLAVER  217 (535)
Q Consensus       177 ~~~~~~gV~~~~g~-~~~~~~~~v~~--~~--~~~~~d~lViATGs  217 (535)
                      ..++..+|+++.+. +..++++.+.+  .+  ..+.+|.||+|+|-
T Consensus       116 ~~~~~~gv~~~~~~~v~~i~~~gv~~~~~g~e~~i~aD~Vv~A~Gq  161 (162)
T d1ps9a2         116 TTLLSRGVKMIPGVSYQKIDDDGLHVVINGETQVLAVDNVVICAGQ  161 (162)
T ss_dssp             HHHHHTTCEEECSCEEEEEETTEEEEEETTEEEEECCSEEEECCCE
T ss_pred             HHHhhCCeEEEeeeEEEEEcCCCCEEecCCeEEEEECCEEEECCCC
Confidence            55777899988664 33355554444  33  56899999999993

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.68  E-value=0.003  Score=53.16  Aligned_cols=34  Identities=24%  Similarity=0.257  Sum_probs=31.4

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        239 AWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       239 ~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      -.+|+|+|||||.+|.+-|..|.+.|++||++.+
T Consensus        11 l~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap   44 (150)
T d1kyqa1          11 LKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSP   44 (150)
T ss_dssp             CTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEE
T ss_pred             eCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence            3469999999999999999999999999999975

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.62  E-value=0.048  Score=45.62  Aligned_cols=32  Identities=16%  Similarity=0.012  Sum_probs=26.2

Q ss_pred             EEEeeCCccHHHHHHHHHhhCC-CeEEEEecCC
Q psy14461         90 YLDRIGDEGILLEEELKRQTNQ-RRDELQERGS  121 (535)
Q Consensus        90 ~v~iiG~G~aG~~~al~~~~~~-~~V~lie~~~  121 (535)
                      +|+|||+|..|+-+|+...+.+ .+|+++.+.+
T Consensus        47 kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~   79 (153)
T d1gtea3          47 AVIVLGAGDTAFDCATSALRCGARRVFLVFRKG   79 (153)
T ss_dssp             EEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             EEEEECCChhHHHHHHHHHHcCCcceeEEEeCC
Confidence            5799999999999998766654 6789998765

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=95.58  E-value=0.0041  Score=59.55  Aligned_cols=39  Identities=13%  Similarity=0.020  Sum_probs=34.7

Q ss_pred             cceEEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcc
Q psy14461         85 RFAVLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHL  123 (535)
Q Consensus        85 ~~~~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~  123 (535)
                      ++..+||+|||+|+||+.+|+.....+.+|+|+||.+..
T Consensus         4 ~~~~~DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~~~~   42 (330)
T d1neka2           4 PVREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPT   42 (330)
T ss_dssp             CEEEESCEEECCSHHHHHHHHHHHHTTCCCEEECSSCGG
T ss_pred             CcccCCEEEECcCHHHHHHHHHHHHcCCeEEEEeCCCCC
Confidence            345689999999999999999999899999999998754

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.53  E-value=0.0037  Score=59.02  Aligned_cols=35  Identities=17%  Similarity=0.241  Sum_probs=32.2

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCc
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLK  277 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~  277 (535)
                      +++|||||.+|+-+|..|++.|.+|+|+++ +++..
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iGG   38 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGG   38 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSG
T ss_pred             cEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCccc
Confidence            589999999999999999999999999999 77654

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.46  E-value=0.0046  Score=58.63  Aligned_cols=39  Identities=10%  Similarity=-0.117  Sum_probs=32.8

Q ss_pred             EEEEEeeCCccHHHHHHHHHh--hCCCeEEEEecCCccccc
Q psy14461         88 VLYLDRIGDEGILLEEELKRQ--TNQRRDELQERGSHLSFR  126 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~--~~~~~V~lie~~~~~~~~  126 (535)
                      -.+|+|||+||+|+++|..+.  ..+.+|+|+|+.+.++..
T Consensus        50 ~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~   90 (311)
T d2gjca1          50 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGG   90 (311)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTT
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCCcce
Confidence            367899999999999997665  458999999999877543

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.43  E-value=0.0037  Score=58.33  Aligned_cols=32  Identities=16%  Similarity=-0.014  Sum_probs=30.0

Q ss_pred             EEEeeCCccHHHHHHHHHhhCCCeEEEEecCC
Q psy14461         90 YLDRIGDEGILLEEELKRQTNQRRDELQERGS  121 (535)
Q Consensus        90 ~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~  121 (535)
                      +|+|||+|++|+.+|+.+...+.+|+|+||.+
T Consensus         4 ~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~   35 (292)
T d1k0ia1           4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQT   35 (292)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            57999999999999999989999999999986

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=95.34  E-value=0.0048  Score=58.21  Aligned_cols=36  Identities=14%  Similarity=0.051  Sum_probs=31.3

Q ss_pred             eEEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcc
Q psy14461         87 AVLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHL  123 (535)
Q Consensus        87 ~~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~  123 (535)
                      +.+||+|||+|+||+.+|+.+...+ +|+|+||.+..
T Consensus         6 ~~~DVvVVG~G~AGl~AA~~a~~~g-~V~llEK~~~~   41 (305)
T d1chua2           6 HSCDVLIIGSGAAGLSLALRLADQH-QVIVLSKGPVT   41 (305)
T ss_dssp             EECSEEEECCSHHHHHHHHHHTTTS-CEEEECSSCTT
T ss_pred             ccCCEEEECccHHHHHHHHHhhcCC-CEEEEECCCCC
Confidence            3578999999999999999887666 99999999854

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=95.31  E-value=0.03  Score=45.23  Aligned_cols=35  Identities=14%  Similarity=0.055  Sum_probs=30.3

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHL  123 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~  123 (535)
                      .+|+|+|+|..++.+|+.+.....+|+|+-+.+.+
T Consensus        31 k~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~~   65 (126)
T d1fl2a2          31 KRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEM   65 (126)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSC
T ss_pred             ceEEEEeCCHHHHHHHHhhhccCCceEEEeccccc
Confidence            35699999999999999998888999999987743

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=95.29  E-value=0.0086  Score=57.61  Aligned_cols=36  Identities=8%  Similarity=-0.116  Sum_probs=32.8

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcc
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHL  123 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~  123 (535)
                      .+|++|||+|++|+.+|.++...+.+|+|+|++...
T Consensus         4 ~yDviIVGsG~aG~v~A~~La~~G~kVlvLEaG~~~   39 (379)
T d2f5va1           4 KYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEID   39 (379)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCC
T ss_pred             cccEEEECcCHHHHHHHHHHhhCCCeEEEEecCCCC
Confidence            479999999999999999998899999999998754

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=95.23  E-value=0.0062  Score=56.13  Aligned_cols=30  Identities=27%  Similarity=0.336  Sum_probs=29.1

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      .|+|||||.+|+-+|..|+++|.+|+|+++
T Consensus         6 DvvIIGaGi~Gls~A~~La~~G~~V~vlE~   35 (276)
T d1ryia1           6 EAVVIGGGIIGSAIAYYLAKENKNTALFES   35 (276)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeC
Confidence            499999999999999999999999999998

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.05  E-value=0.0064  Score=53.38  Aligned_cols=36  Identities=33%  Similarity=0.420  Sum_probs=32.2

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL  276 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l  276 (535)
                      -++|.|||+|.+|..+|..+++.|.+|+++++ +..+
T Consensus         4 IkkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l   40 (192)
T d1f0ya2           4 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDIL   40 (192)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHH
T ss_pred             eEEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHH
Confidence            37999999999999999999999999999987 4433

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=94.94  E-value=0.01  Score=57.26  Aligned_cols=35  Identities=14%  Similarity=-0.040  Sum_probs=32.2

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCc
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSH  122 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~  122 (535)
                      .++|+|||+|.+|..+|.++...+.+|+|+|++..
T Consensus         2 ~v~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~~   36 (367)
T d1n4wa1           2 YVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQL   36 (367)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             cCeEEEeCcCHHHHHHHHHHHHCcCeEEEEecCCC
Confidence            47899999999999999999889999999999864

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.85  E-value=0.0088  Score=57.37  Aligned_cols=36  Identities=11%  Similarity=-0.106  Sum_probs=30.4

Q ss_pred             EEEEEeeCCccHHHHHHHHHh----hCCCeEEEEecCCcc
Q psy14461         88 VLYLDRIGDEGILLEEELKRQ----TNQRRDELQERGSHL  123 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~----~~~~~V~lie~~~~~  123 (535)
                      ..||+|||+|++|+.+|+.+.    ..+.+|+|+||+...
T Consensus        21 e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~~   60 (356)
T d1jnra2          21 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVE   60 (356)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTT
T ss_pred             ecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCCC
Confidence            357899999999999999764    368899999998754

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=94.79  E-value=0.011  Score=50.57  Aligned_cols=32  Identities=22%  Similarity=0.312  Sum_probs=30.6

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      .|+|+|||+|.+|.-+|..|.+.|.+|++++|
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr   33 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACR   33 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEES
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEEC
Confidence            48999999999999999999999999999997

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.76  E-value=0.015  Score=46.15  Aligned_cols=33  Identities=24%  Similarity=0.178  Sum_probs=30.9

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        240 WPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       240 ~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      .+++|+|||+|.+|..-|..|.+.|++|+++.+
T Consensus        11 ~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~   43 (113)
T d1pjqa1          11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNAL   43 (113)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEES
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence            468999999999999999999999999999975

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=94.64  E-value=0.0078  Score=52.50  Aligned_cols=32  Identities=25%  Similarity=0.270  Sum_probs=30.4

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      -++|.|||+|.+|..+|..+++.|.+|+++++
T Consensus         4 I~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~   35 (186)
T d1wdka3           4 VKQAAVLGAGIMGGGIAYQSASKGTPILMKDI   35 (186)
T ss_dssp             CSSEEEECCHHHHHHHHHHHHHTTCCEEEECS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEEC
Confidence            47899999999999999999999999999987

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=94.61  E-value=0.022  Score=43.35  Aligned_cols=33  Identities=12%  Similarity=0.131  Sum_probs=31.1

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        240 WPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       240 ~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      ..|+|+|+|.|-+|+.+|..|.++|.+|++.+.
T Consensus         4 ~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~   36 (93)
T d2jfga1           4 QGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDT   36 (93)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEES
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeC
Confidence            368999999999999999999999999999987

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=94.18  E-value=0.019  Score=55.37  Aligned_cols=35  Identities=14%  Similarity=-0.047  Sum_probs=31.7

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCc
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSH  122 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~  122 (535)
                      -++++|||+|.+|+.+|.++...+.+|+|+|++..
T Consensus         7 ~~dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~~   41 (370)
T d3coxa1           7 RVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRS   41 (370)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            47899999999999999988888999999999853

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=94.16  E-value=0.017  Score=54.93  Aligned_cols=34  Identities=15%  Similarity=0.213  Sum_probs=30.0

Q ss_pred             cEEEECCChHHHHHHHHHH-----hCCCcEEEEEc-CcCC
Q psy14461        243 KTLVLGGSLMAVEIAATLN-----FLGVPVTLVYS-RRLL  276 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~-----~~g~~Vtlv~~-~~~l  276 (535)
                      .|+|||||++|+-+|..|+     +.|.+|+|+++ +.+.
T Consensus         9 DV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~~   48 (360)
T d1pn0a1           9 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKV   48 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCC
T ss_pred             CEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCCC
Confidence            5999999999999999996     57999999998 6554

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=94.07  E-value=0.019  Score=49.30  Aligned_cols=31  Identities=26%  Similarity=0.052  Sum_probs=29.8

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      |++.|||+|.+|.-+|..|++.|.+|++++|
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r   32 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDI   32 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEEC
Confidence            7899999999999999999999999999986

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.89  E-value=0.1  Score=42.17  Aligned_cols=50  Identities=16%  Similarity=0.075  Sum_probs=37.5

Q ss_pred             CCchhhHHHHHHHHHhcCCcceEEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcc
Q psy14461         66 AVLREENARAERYLNARGDRFAVLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHL  123 (535)
Q Consensus        66 ~~cp~~~~~~k~~~~~~~~~~~~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~  123 (535)
                      +||. .|--+..++  .++     +|+|+|+|..++..|+.+.....+|+|+-|.+.+
T Consensus        20 syca-~CDg~a~~f--rgk-----~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~   69 (130)
T d1vdca2          20 SACA-VCDGAAPIF--RNK-----PLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAF   69 (130)
T ss_dssp             ESCH-HHHTTSGGG--TTS-----EEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred             EEEE-EecCchHHh--CCC-----EEEEEcCchHHHHHHHHHhCCCCcEEEEEecccc
Confidence            5788 774211122  233     4699999999999999999889999999988754

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=93.60  E-value=0.04  Score=46.57  Aligned_cols=33  Identities=33%  Similarity=0.487  Sum_probs=31.2

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        240 WPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       240 ~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      .|.+|+|+|+|..|+..+..+.++|.+|++++.
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~   63 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDI   63 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeC
Confidence            478999999999999999999999999999985

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=93.49  E-value=0.02  Score=54.00  Aligned_cols=36  Identities=14%  Similarity=0.108  Sum_probs=30.0

Q ss_pred             EEEEEeeCCccHHHHHHHHHhh--CCCeEEEEecCCcc
Q psy14461         88 VLYLDRIGDEGILLEEELKRQT--NQRRDELQERGSHL  123 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~--~~~~V~lie~~~~~  123 (535)
                      ..||+|||+|.||+.+|+....  .+.+|+|+||....
T Consensus         5 ~~DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~~~   42 (311)
T d1kf6a2           5 QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPM   42 (311)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGG
T ss_pred             ecCEEEECccHHHHHHHHHHHHhCCCCEEEEEECCCCC
Confidence            3578999999999999987754  47799999998743

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=93.23  E-value=0.034  Score=46.70  Aligned_cols=30  Identities=23%  Similarity=0.083  Sum_probs=29.0

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      ||+|||+|.+|.-+|..|++.|.+|+++.|
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~r   31 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGHEVQGWLR   31 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCceEEEEc
Confidence            699999999999999999999999999988

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=93.04  E-value=0.045  Score=44.36  Aligned_cols=31  Identities=23%  Similarity=0.161  Sum_probs=29.5

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      |+++|+|.|.+|..+|..|.+.|.+|++++.
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~   31 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDI   31 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEES
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecC
Confidence            6799999999999999999999999999985

>d1fcda2 c.3.1.5 (A:115-255) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=93.01  E-value=0.041  Score=45.39  Aligned_cols=78  Identities=14%  Similarity=-0.020  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHhCCC--cEEEEEc-Cc--CCccCcHHHHHHHHHhhhcCCeEE-cce--EEEEEEEeCCCcEEEEEecCCC
Q psy14461        252 MAVEIAATLNFLGV--PVTLVYS-RR--LLKHFDQEMVRILLSSLTKAGVSI-QCC--VIEKVISSFDGMKGVRGFHPES  323 (535)
Q Consensus       252 ~g~e~A~~l~~~g~--~Vtlv~~-~~--~l~~~~~~~~~~~~~~l~~~gV~i-~~~--~v~~i~~~~~~~~~v~~~~~~~  323 (535)
                      +++-++..|+++|.  +|.++.. +.  ..+.+.+.+.+.+.+.++++||++ .+.  .+.+++..   ...+++   .+
T Consensus        54 ~a~l~~~~lr~~g~r~kv~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~v~vd~~---~~~~~~---~~  127 (141)
T d1fcda2          54 RASQVAYYLKAHKPMSKVIILDSSQTFSKQSQFSKGWERLYGFGTENAMIEWHPGPDSAVVKVDGG---EMMVET---AF  127 (141)
T ss_dssp             HHHHHHHHHGGGCSCCCEEEECSCSSCTTHHHHHHHHHHHHCSTTSSCSEEEECSSTTCEEEEEET---TTEEEE---TT
T ss_pred             HHHHHHHHHHHcCCCCcEEEEecCCCCccCCcccHHHHHHHHHHHHhcCceeeecCCceEEeecCC---cEEEEe---CC
Confidence            34555666777774  6777765 33  223344566777888889999999 765  46666653   234555   37


Q ss_pred             CCceEEEcCEEEEc
Q psy14461        324 KEPFADVFKTVVNA  337 (535)
Q Consensus       324 G~~~~~~~D~vi~a  337 (535)
                      |+  ++++|++.+.
T Consensus       128 Ge--~v~yD~l~vv  139 (141)
T d1fcda2         128 GD--EFKADVINLI  139 (141)
T ss_dssp             CC--EEECSEEEEC
T ss_pred             Cc--EEeeeEEEeC
Confidence            88  8999998874

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=92.71  E-value=0.045  Score=52.45  Aligned_cols=30  Identities=23%  Similarity=0.207  Sum_probs=28.9

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      .|||||+|+.|+-+|..|++.|.+|.|+|+
T Consensus         4 ~VIVVGsG~aG~v~A~rLaeaG~~VlvLEa   33 (367)
T d1n4wa1           4 PAVVIGTGYGAAVSALRLGEAGVQTLMLEM   33 (367)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEES
T ss_pred             eEEEeCcCHHHHHHHHHHHHCcCeEEEEec
Confidence            489999999999999999999999999998

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=92.60  E-value=0.045  Score=52.61  Aligned_cols=34  Identities=15%  Similarity=0.004  Sum_probs=30.6

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCC
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGS  121 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~  121 (535)
                      .+|++|||+|.+|...|.++...+.+|+|+|++.
T Consensus         2 ~YD~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~   35 (360)
T d1kdga1           2 PYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGG   35 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCCeEEEEEccC
Confidence            3789999999999998888877889999999995

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=92.23  E-value=0.047  Score=52.41  Aligned_cols=30  Identities=27%  Similarity=0.369  Sum_probs=28.8

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      .|+|||+|..|+-+|..|++.|.+|+++|+
T Consensus         9 dvIVVGsG~aG~v~A~rLaeaG~~VlvLEa   38 (370)
T d3coxa1           9 PALVIGSGYGGAVAALRLTQAGIPTQIVEM   38 (370)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeC
Confidence            589999999999999999999999999997

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=92.09  E-value=0.072  Score=43.05  Aligned_cols=30  Identities=17%  Similarity=0.201  Sum_probs=28.6

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      +|+|+|+|.+|..+|..|.+.|.+|++++.
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~   31 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDI   31 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCcceecC
Confidence            589999999999999999999999999985

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.01  E-value=0.012  Score=52.77  Aligned_cols=25  Identities=16%  Similarity=0.279  Sum_probs=22.9

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcE
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPV  267 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~V  267 (535)
                      +|+|||+|.+|+-.|..|++.|.+|
T Consensus         2 kV~VIGaGi~GlstA~~L~~~G~~v   26 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHERYHSV   26 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTT
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCc
Confidence            6999999999999999999998654

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=91.71  E-value=0.065  Score=51.26  Aligned_cols=35  Identities=14%  Similarity=-0.031  Sum_probs=29.6

Q ss_pred             eEEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCc
Q psy14461         87 AVLYLDRIGDEGILLEEELKRQTNQRRDELQERGSH  122 (535)
Q Consensus        87 ~~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~  122 (535)
                      ..+|++|||+|.+|...|.++... .+|+|+|++..
T Consensus        25 ~~YD~IIVGsG~aG~vlA~rLae~-~kVLvLEaG~~   59 (351)
T d1ju2a1          25 GSYDYVIVGGGTSGCPLAATLSEK-YKVLVLERGSL   59 (351)
T ss_dssp             EEEEEEEECCSTTHHHHHHHHTTT-SCEEEECSSBC
T ss_pred             CCccEEEECccHHHHHHHHHhcCC-CCEEEEecCCC
Confidence            358999999999999888876554 89999999974

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=91.66  E-value=0.063  Score=51.14  Aligned_cols=30  Identities=17%  Similarity=0.211  Sum_probs=29.0

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      .|+|||+|..|+-+|..|++.|.+|.|+|+
T Consensus         6 DviIVGsG~aG~v~A~~La~~G~kVlvLEa   35 (379)
T d2f5va1           6 DVVIVGSGPIGCTYARELVGAGYKVAMFDI   35 (379)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             cEEEECcCHHHHHHHHHHhhCCCeEEEEec
Confidence            599999999999999999999999999997

>d1abaa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Bacteriophage T4 [TaxId: 10665]

Probab=91.65  E-value=0.077  Score=39.61  Aligned_cols=33  Identities=12%  Similarity=0.156  Sum_probs=26.5

Q ss_pred             EEEeCC----CchhhHHHHHHHHHhcCCcceEEEEEee
Q psy14461         61 LIFTHA----VLREENARAERYLNARGDRFAVLYLDRI   94 (535)
Q Consensus        61 ~v~~k~----~cp~~~~~~k~~~~~~~~~~~~~~v~ii   94 (535)
                      -||++.    .|| ||.+||+++.+.+.+++.+++...
T Consensus         3 ~Iy~~~~~~~~C~-~C~~AK~lL~~~~i~y~~~~i~~~   39 (87)
T d1abaa_           3 KVYGYDSNIHKCG-PCDNAKRLLTVKKQPFEFINIMPE   39 (87)
T ss_dssp             EEEECCTTTSCCH-HHHHHHHHHHHTTCCEEEEESCSB
T ss_pred             EEEEeCCCCCCCh-hHHHHHHHHHHcCCCceecccccc
Confidence            467655    499 999999999999998877776544

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=91.53  E-value=0.021  Score=45.43  Aligned_cols=32  Identities=28%  Similarity=0.326  Sum_probs=28.0

Q ss_pred             CCcEEEECCCh-----------HHHHHHHHHHhCCCcEEEEEc
Q psy14461        241 PGKTLVLGGSL-----------MAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       241 ~k~vvViGgG~-----------~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      .++|+|+|+|+           .+..++..|++.|.++.++..
T Consensus         4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~   46 (121)
T d1a9xa4           4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNC   46 (121)
T ss_dssp             SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred             CCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEec
Confidence            47899999996           577888999999999999976

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=91.27  E-value=0.066  Score=45.84  Aligned_cols=33  Identities=27%  Similarity=0.309  Sum_probs=31.0

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        240 WPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       240 ~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      .|.+|+|+|+|..|+..+....++|++|++++.
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~   60 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDV   60 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEec
Confidence            368999999999999999999999999999986

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.01  E-value=0.016  Score=51.87  Aligned_cols=31  Identities=16%  Similarity=-0.039  Sum_probs=25.6

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEec
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQER  119 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~  119 (535)
                      ++|+|||+|.+|+..|+.+...+.+|+++|+
T Consensus         1 mkV~VIGaGi~GlstA~~L~~~G~~v~v~e~   31 (246)
T d1kifa1           1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLD   31 (246)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSSCE
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCceEEee
Confidence            4789999999999999988877776655555

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=90.81  E-value=0.097  Score=50.79  Aligned_cols=35  Identities=17%  Similarity=-0.051  Sum_probs=29.9

Q ss_pred             EEEEEeeCCccHHHHHHHHHhhCC-CeEEEEecCCc
Q psy14461         88 VLYLDRIGDEGILLEEELKRQTNQ-RRDELQERGSH  122 (535)
Q Consensus        88 ~~~v~iiG~G~aG~~~al~~~~~~-~~V~lie~~~~  122 (535)
                      .+|++|||+|.+|...|.++...+ .+|+|+|++..
T Consensus        24 tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~   59 (391)
T d1gpea1          24 TYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFY   59 (391)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCC
T ss_pred             eeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCCC
Confidence            489999999999998888776554 79999999974

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=90.33  E-value=0.2  Score=39.14  Aligned_cols=32  Identities=28%  Similarity=0.380  Sum_probs=30.1

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      ..+|.|+|||..|..+|...+++|.+|.++++
T Consensus        11 ~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~   42 (111)
T d1kjqa2          11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDR   42 (111)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHTTTCEEEEEES
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcC
Confidence            35799999999999999999999999999997

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=90.16  E-value=0.08  Score=38.60  Aligned_cols=31  Identities=23%  Similarity=0.170  Sum_probs=29.5

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      |+|.|+|||..|..++....++|.+|.++++
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp   32 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGL   32 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEECT
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcC
Confidence            5799999999999999999999999999987

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=90.06  E-value=0.12  Score=49.84  Aligned_cols=56  Identities=20%  Similarity=0.156  Sum_probs=38.4

Q ss_pred             HHHHHhhhcCCeEE-cceEEEEEEEeCCC---cE-EEEEecCCCCCceEEEcCE-EEEccCCC
Q psy14461        285 RILLSSLTKAGVSI-QCCVIEKVISSFDG---MK-GVRGFHPESKEPFADVFKT-VVNAMEKK  341 (535)
Q Consensus       285 ~~~~~~l~~~gV~i-~~~~v~~i~~~~~~---~~-~v~~~~~~~G~~~~~~~D~-vi~a~G~~  341 (535)
                      ..+...++..++++ +++.|++|.-++++   +. -|++.. .+|+++++.++. ||+|.|.-
T Consensus       229 ~~~~p~~~~~nl~i~t~~~V~rI~~~~~~~~~ra~GV~~~~-~~g~~~~v~A~keVILsAGAi  290 (385)
T d1cf3a1         229 EWLLPNYQRPNLQVLTGQYVGKVLLSQNGTTPRAVGVEFGT-HKGNTHNVYAKHEVLLAAGSA  290 (385)
T ss_dssp             HHTGGGTTCTTEEEEESCEEEEEEEECSSSSCEEEEEEEEE-ETTEEEEEEEEEEEEECSCTT
T ss_pred             hhcCchhcCCcccccCCceEEEEEEcCCCceeEEEEEEEEc-CCCCEEEEEeCCEEEEcCchh
Confidence            34445567789999 99999999654322   22 255432 368777888876 99999954

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=89.47  E-value=0.16  Score=44.74  Aligned_cols=30  Identities=20%  Similarity=0.139  Sum_probs=26.6

Q ss_pred             cEEEECCChHHHHHHHHHHhCCC-cEEEEEc
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGV-PVTLVYS  272 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~-~Vtlv~~  272 (535)
                      .|+|||+|+.|+.+|..+++.|. +|.+++.
T Consensus         5 DviIIG~GpaGl~aA~~aa~~g~k~V~iie~   35 (238)
T d1aoga1           5 DLVVIGAGSGGLEAAWNAATLYKKRVAVIDV   35 (238)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTSCCCEEEEES
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCEEEEEEe
Confidence            58999999999999999999885 6888875

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.06  E-value=0.17  Score=38.74  Aligned_cols=31  Identities=26%  Similarity=0.262  Sum_probs=26.1

Q ss_pred             cEEEEeCCCchhhHHHHHHHHHhcCCcceEEE
Q psy14461         59 RILIFTHAVLREENARAERYLNARGDRFAVLY   90 (535)
Q Consensus        59 ~v~v~~k~~cp~~~~~~k~~~~~~~~~~~~~~   90 (535)
                      .|++|++.+|| +|..++.++.+...++....
T Consensus        18 ~i~lft~~~C~-~C~~a~~~L~~~~~~~~~~~   48 (100)
T d1wjka_          18 VLTLFTKAPCP-LCDEAKEVLQPYKDRFILQE   48 (100)
T ss_dssp             EEEEEECSSCH-HHHHHHHHTSTTSSSSEEEE
T ss_pred             EEEEEECCCCC-ChHHHHHHHHHhhhhcceEE
Confidence            57789999999 99999999998887775433

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=88.27  E-value=0.51  Score=38.67  Aligned_cols=31  Identities=29%  Similarity=0.399  Sum_probs=29.1

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      .+++|+|.|..|..++..|.+.|.+|++++.
T Consensus         4 nHiII~G~g~~g~~l~~~L~~~~~~v~vId~   34 (153)
T d1id1a_           4 DHFIVCGHSILAINTILQLNQRGQNVTVISN   34 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEec
Confidence            4799999999999999999999999999985

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=88.27  E-value=1.1  Score=38.72  Aligned_cols=33  Identities=9%  Similarity=-0.025  Sum_probs=25.2

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCC
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGS  121 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~  121 (535)
                      .+|+|||+|..|+..+......+..++++-+..
T Consensus        33 K~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~   65 (235)
T d1w4xa2          33 QRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP   65 (235)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHBSEEEEEESSC
T ss_pred             CEEEEECCCccHHHHHHHHHhhhcccccccccc
Confidence            356999999999998887766666776666554

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=88.08  E-value=0.14  Score=45.51  Aligned_cols=30  Identities=17%  Similarity=0.128  Sum_probs=27.1

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-CcEEEEEc
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLG-VPVTLVYS  272 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g-~~Vtlv~~  272 (535)
                      .|+|||+|+.|+.+|..++++| ++|.+++.
T Consensus         5 DvvVIG~GpAG~~aAi~aa~~g~k~V~vie~   35 (240)
T d1feca1           5 DLVVIGAGSGGLEAGWNAASLHKKRVAVIDL   35 (240)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHCCCEEEEES
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCEEEEEEE
Confidence            5899999999999999999988 46889986

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.85  E-value=0.25  Score=42.89  Aligned_cols=30  Identities=20%  Similarity=0.133  Sum_probs=28.1

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      +|.|||.|++|+-+|..|++.|.+|+.++.
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~   31 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGHEVIGVDV   31 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECS
T ss_pred             EEEEECCCHhHHHHHHHHHhCCCcEEEEeC
Confidence            589999999999999999999999999875

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=87.35  E-value=0.25  Score=40.63  Aligned_cols=33  Identities=18%  Similarity=0.187  Sum_probs=30.4

Q ss_pred             CCCcEEEEC-CChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        240 WPGKTLVLG-GSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       240 ~~k~vvViG-gG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      .-++|.||| .|.+|.-+|..|++.|.+|+++++
T Consensus         8 ~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~   41 (152)
T d2pv7a2           8 DIHKIVIVGGYGKLGGLFARYLRASGYPISILDR   41 (152)
T ss_dssp             TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECT
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccc
Confidence            347999999 699999999999999999999987

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=87.26  E-value=0.21  Score=47.65  Aligned_cols=30  Identities=20%  Similarity=0.214  Sum_probs=28.8

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      .++|||+|..|+-+|..|++.|.+|.|+|+
T Consensus         4 D~IIVGsG~aG~v~A~rLae~g~~VlvLEa   33 (360)
T d1kdga1           4 DYIIVGAGPGGIIAADRLSEAGKKVLLLER   33 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECS
T ss_pred             CEEEECcCHHHHHHHHHHhhCCCeEEEEEc
Confidence            589999999999999999999999999998

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=86.62  E-value=0.15  Score=43.96  Aligned_cols=31  Identities=19%  Similarity=0.192  Sum_probs=28.9

Q ss_pred             CcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      ++|+|||+|..|.-+|..|++.|.+|++..|
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r   38 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHM   38 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEEEEEEECS
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCeEEEEEe
Confidence            4799999999999999999999999999875

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=86.60  E-value=0.29  Score=41.34  Aligned_cols=30  Identities=20%  Similarity=0.267  Sum_probs=27.8

Q ss_pred             cEEEE-CCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        243 KTLVL-GGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       243 ~vvVi-GgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      +|.|| |.|.+|..+|..|++.|.+|++..|
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R   32 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHEIVVGSR   32 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEES
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEEC
Confidence            58899 5699999999999999999999988

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=85.31  E-value=0.33  Score=40.38  Aligned_cols=30  Identities=27%  Similarity=0.196  Sum_probs=28.0

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      ||.|||.|.+|.-+|..|++.|.+|+.++|
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~   31 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSR   31 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEEC
Confidence            589999999999999999999999998875

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=85.21  E-value=0.49  Score=39.42  Aligned_cols=34  Identities=15%  Similarity=0.122  Sum_probs=30.7

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        239 AWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       239 ~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      +.+++|+|+|+|.+|+-++..++..|.+|+++++
T Consensus        25 ~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~   58 (170)
T d1e3ja2          25 QLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTAR   58 (170)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCCCEEEEEcccccchhhHhhHhhhcccccccch
Confidence            3468999999999999999999999999999886

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=85.20  E-value=0.27  Score=41.82  Aligned_cols=30  Identities=20%  Similarity=0.182  Sum_probs=28.1

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      +|.|||+|..|.-+|..|++.|.+|++..|
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~~V~l~~r   31 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGNEVRIWGT   31 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEEe
Confidence            589999999999999999999999999875

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.98  E-value=0.33  Score=40.47  Aligned_cols=33  Identities=18%  Similarity=0.052  Sum_probs=31.2

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        240 WPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       240 ~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      .+|+++|+|-|.+|-.+|..++.+|.+|++.+.
T Consensus        23 ~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~   55 (163)
T d1li4a1          23 AGKVAVVAGYGDVGKGCAQALRGFGARVIITEI   55 (163)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             cCCEEEEeccccccHHHHHHHHhCCCeeEeeec
Confidence            479999999999999999999999999999986

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=84.77  E-value=0.36  Score=40.64  Aligned_cols=32  Identities=3%  Similarity=-0.287  Sum_probs=28.9

Q ss_pred             EEEeeCCccHHHHHHHHHhhCCCeEEEEecCC
Q psy14461         90 YLDRIGDEGILLEEELKRQTNQRRDELQERGS  121 (535)
Q Consensus        90 ~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~  121 (535)
                      ++.|||+|..|.+.|......+.+|+++++.+
T Consensus         3 ~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~   34 (184)
T d1bg6a2           3 TYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   34 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            57999999999999988888899999999875

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.51  E-value=0.51  Score=40.64  Aligned_cols=35  Identities=20%  Similarity=0.201  Sum_probs=30.9

Q ss_pred             CcEEEECC-ChHHHHHHHHHHhCCCcEEEEEc-CcCC
Q psy14461        242 GKTLVLGG-SLMAVEIAATLNFLGVPVTLVYS-RRLL  276 (535)
Q Consensus       242 k~vvViGg-G~~g~e~A~~l~~~g~~Vtlv~~-~~~l  276 (535)
                      |+|+|+|| |.+|-.++..|.+.|.+|+++.| +.-+
T Consensus         4 kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~   40 (205)
T d1hdoa_           4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRL   40 (205)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhc
Confidence            78999995 99999999999999999999998 4433

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.43  E-value=0.47  Score=39.59  Aligned_cols=34  Identities=9%  Similarity=-0.043  Sum_probs=30.4

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        239 AWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       239 ~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      ..+++|+|+|+|.+|.-++..++..|.+|+.+++
T Consensus        26 ~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~   59 (168)
T d1piwa2          26 GPGKKVGIVGLGGIGSMGTLISKAMGAETYVISR   59 (168)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHHTCEEEEEES
T ss_pred             CCCCEEEEECCCCcchhHHHHhhhcccccccccc
Confidence            3568999999999999999988889999999887

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=84.18  E-value=0.54  Score=39.39  Aligned_cols=35  Identities=17%  Similarity=0.058  Sum_probs=31.4

Q ss_pred             cCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        238 GAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       238 ~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      ...+|+|+|+|+|-+|--++..|.+.|.+|+++.|
T Consensus        15 ~~~~k~vlIlGaGGaarai~~al~~~g~~i~I~nR   49 (170)
T d1nyta1          15 IRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNR   49 (170)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CCCCCEEEEECCcHHHHHHHHHhcccceEEEeccc
Confidence            34568999999999999999999999999999877

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=83.38  E-value=0.46  Score=37.92  Aligned_cols=33  Identities=9%  Similarity=-0.037  Sum_probs=29.0

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCC
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGS  121 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~  121 (535)
                      ++|+|+|.|..|...+-.+...+.+|+++|+++
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~   33 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   33 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCcceecCCh
Confidence            468999999999888877777889999999976

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=82.90  E-value=0.71  Score=38.21  Aligned_cols=34  Identities=9%  Similarity=-0.085  Sum_probs=30.5

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        239 AWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       239 ~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      +.+++|+|+|+|.+|+-++..++..|.+|..+++
T Consensus        26 ~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~   59 (166)
T d1llua2          26 RPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDI   59 (166)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCCCEEEEeeccccHHHHHHHHHHcCCccceecc
Confidence            4468999999999999999999999999998876

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=82.81  E-value=0.49  Score=45.45  Aligned_cols=32  Identities=22%  Similarity=0.297  Sum_probs=29.4

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-CcEEEEEc-Cc
Q psy14461        243 KTLVLGGSLMAVEIAATLNFLG-VPVTLVYS-RR  274 (535)
Q Consensus       243 ~vvViGgG~~g~e~A~~l~~~g-~~Vtlv~~-~~  274 (535)
                      .++|||+|..|+-+|..|++.+ .+|.|+|+ ..
T Consensus        26 D~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~   59 (391)
T d1gpea1          26 DYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFY   59 (391)
T ss_dssp             EEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCC
T ss_pred             eEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCCC
Confidence            6999999999999999999988 69999999 54

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=82.73  E-value=0.65  Score=39.07  Aligned_cols=34  Identities=18%  Similarity=0.100  Sum_probs=28.9

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCC-cEEEEEc
Q psy14461        239 AWPGKTLVLGGSLMAVEIAATLNFLGV-PVTLVYS  272 (535)
Q Consensus       239 ~~~k~vvViGgG~~g~e~A~~l~~~g~-~Vtlv~~  272 (535)
                      +.+++|+|+|+|.+|+-++..++..|. +|+.+++
T Consensus        26 ~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~   60 (174)
T d1jqba2          26 EMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGS   60 (174)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECC
T ss_pred             CCCCEEEEEcCCcchhhhhhhhhcccccccccccc
Confidence            346899999999999999999999997 6777764

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=82.72  E-value=0.55  Score=38.68  Aligned_cols=34  Identities=6%  Similarity=-0.186  Sum_probs=29.7

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCc
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSH  122 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~  122 (535)
                      ++|.|+|+|..|..-+..+...+.+|+++++++.
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~   34 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHH
Confidence            4789999999998888888888999999999874

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=82.65  E-value=0.65  Score=39.63  Aligned_cols=33  Identities=27%  Similarity=0.156  Sum_probs=30.2

Q ss_pred             CCCcEEEEC-CChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        240 WPGKTLVLG-GSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       240 ~~k~vvViG-gG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      ..|+++|.| +|-+|.++|..|.+.|.+|+++.|
T Consensus        22 ~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r   55 (191)
T d1luaa1          22 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGR   55 (191)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhhccchhhccc
Confidence            468899998 589999999999999999999988

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=82.53  E-value=0.86  Score=40.93  Aligned_cols=35  Identities=20%  Similarity=0.307  Sum_probs=31.1

Q ss_pred             CCcEEEECC-ChHHHHHHHHHHhCCCcEEEEEc-CcC
Q psy14461        241 PGKTLVLGG-SLMAVEIAATLNFLGVPVTLVYS-RRL  275 (535)
Q Consensus       241 ~k~vvViGg-G~~g~e~A~~l~~~g~~Vtlv~~-~~~  275 (535)
                      .+||+|.|| |++|-.++..|.+.|.+|+.+.| +..
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~   39 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTA   39 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCT
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCcc
Confidence            378999996 99999999999999999999998 443

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=82.37  E-value=0.53  Score=42.81  Aligned_cols=54  Identities=17%  Similarity=0.343  Sum_probs=38.2

Q ss_pred             CCcEEEECC-ChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE
Q psy14461        241 PGKTLVLGG-SLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI  298 (535)
Q Consensus       241 ~k~vvViGg-G~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i  298 (535)
                      .++|+|.|| |++|..++..|.+.|.+|+.+.| .....   ... ......+...++++
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~---~~~-~~~~~~~~~~~v~~   58 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSN---IDK-VQMLLYFKQLGAKL   58 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSC---HHH-HHHHHHHHTTTCEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccc---hhH-HHHHhhhccCCcEE
Confidence            467999996 99999999999999999999988 43322   111 12223345566665

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=82.31  E-value=0.66  Score=39.34  Aligned_cols=33  Identities=6%  Similarity=-0.210  Sum_probs=30.6

Q ss_pred             EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCC
Q psy14461         89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGS  121 (535)
Q Consensus        89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~  121 (535)
                      -+|+|+|+|-+|++++.....-+..|+++|...
T Consensus        30 a~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~   62 (183)
T d1l7da1          30 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVRA   62 (183)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred             cEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccH
Confidence            578999999999999999999999999999876

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=82.00  E-value=0.6  Score=34.76  Aligned_cols=33  Identities=9%  Similarity=-0.232  Sum_probs=29.0

Q ss_pred             EEEeeCCccHHHHHHHHHhhCCCeEEEEecCCc
Q psy14461         90 YLDRIGDEGILLEEELKRQTNQRRDELQERGSH  122 (535)
Q Consensus        90 ~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~  122 (535)
                      ++.|+|.|..|+++|-.+...+.+|+++|....
T Consensus         7 ~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~   39 (93)
T d2jfga1           7 NVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT   39 (93)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEESSSS
T ss_pred             EEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcC
Confidence            358999999999999888888999999998663

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.81  E-value=0.82  Score=38.07  Aligned_cols=34  Identities=18%  Similarity=0.176  Sum_probs=29.5

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCC-cEEEEEc
Q psy14461        239 AWPGKTLVLGGSLMAVEIAATLNFLGV-PVTLVYS  272 (535)
Q Consensus       239 ~~~k~vvViGgG~~g~e~A~~l~~~g~-~Vtlv~~  272 (535)
                      +.+++|+|+|+|.+|+-++..++..|. +|+++++
T Consensus        25 ~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~   59 (171)
T d1pl8a2          25 TLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDL   59 (171)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEES
T ss_pred             CCCCEEEEECCCccHHHHHHHHHHcCCceEEeccC
Confidence            346799999999999999999999998 6877775

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=81.69  E-value=0.63  Score=38.63  Aligned_cols=33  Identities=6%  Similarity=-0.158  Sum_probs=28.8

Q ss_pred             EEEeeCCccHHHHHHHHHhhCCCeEEEEecCCc
Q psy14461         90 YLDRIGDEGILLEEELKRQTNQRRDELQERGSH  122 (535)
Q Consensus        90 ~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~  122 (535)
                      +|+|+|+|..|...|-.+...+.+|+|+|++..
T Consensus         4 ~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~   36 (182)
T d1e5qa1           4 SVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLE   36 (182)
T ss_dssp             EEEEECCSTTHHHHHHHHHTTTCEEEEEESCHH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEEECChH
Confidence            468999999999888888888899999999863

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=81.28  E-value=0.78  Score=38.28  Aligned_cols=35  Identities=6%  Similarity=-0.158  Sum_probs=31.3

Q ss_pred             eEEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCC
Q psy14461         87 AVLYLDRIGDEGILLEEELKRQTNQRRDELQERGS  121 (535)
Q Consensus        87 ~~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~  121 (535)
                      ..-+++|+|+|-+|++++.....-+..|+++|.+.
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~   65 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV   65 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcH
Confidence            34678999999999999999999999999999865

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=80.49  E-value=0.81  Score=38.57  Aligned_cols=33  Identities=12%  Similarity=0.109  Sum_probs=29.3

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCC-cEEEEEc
Q psy14461        240 WPGKTLVLGGSLMAVEIAATLNFLGV-PVTLVYS  272 (535)
Q Consensus       240 ~~k~vvViGgG~~g~e~A~~l~~~g~-~Vtlv~~  272 (535)
                      .+++|+|+|+|.+|.-++..++.+|. +|+++++
T Consensus        28 ~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~   61 (182)
T d1vj0a2          28 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAG   61 (182)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEES
T ss_pred             CCCEEEEECCCccchhheeccccccccccccccc
Confidence            45899999999999999999999997 6888876

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=80.11  E-value=0.97  Score=37.49  Aligned_cols=34  Identities=15%  Similarity=-0.044  Sum_probs=30.2

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461        239 AWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS  272 (535)
Q Consensus       239 ~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  272 (535)
                      +.+++|+|+|+|.+|+-++..++..|.++.++.+
T Consensus        29 ~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~   62 (168)
T d1uufa2          29 GPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTT   62 (168)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCCCEEEEeccchHHHHHHHHhhcccccchhhcc
Confidence            3568999999999999999999999999988776

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=80.08  E-value=0.64  Score=38.55  Aligned_cols=33  Identities=27%  Similarity=0.292  Sum_probs=29.3

Q ss_pred             CCCcEEEECCChHHHHHHHHHHhCCC-cEEEEEc
Q psy14461        240 WPGKTLVLGGSLMAVEIAATLNFLGV-PVTLVYS  272 (535)
Q Consensus       240 ~~k~vvViGgG~~g~e~A~~l~~~g~-~Vtlv~~  272 (535)
                      ..++++|||+|.+|..++..|...|. +++++.|
T Consensus        23 ~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nR   56 (159)
T d1gpja2          23 HDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANR   56 (159)
T ss_dssp             TTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECS
T ss_pred             ccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcC
Confidence            35899999999999999999999997 5888876

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=80.07  E-value=0.44  Score=35.82  Aligned_cols=32  Identities=9%  Similarity=0.004  Sum_probs=22.4

Q ss_pred             HHHhhhcCCcEEEEeCCCchhhHHHHHHHHHhc
Q psy14461         50 YISRLSYENRILIFTHAVLREENARAERYLNAR   82 (535)
Q Consensus        50 ~~~~~i~~~~v~v~~k~~cp~~~~~~k~~~~~~   82 (535)
                      .+..+-....+.+|...||| +|..+...+...
T Consensus         9 ~ik~l~~~~~i~~F~s~~C~-~C~~~~p~~~~~   40 (96)
T d1hyua4           9 QIRDIDGDFEFETYYSLSCH-NCPDVVQALNLM   40 (96)
T ss_dssp             HHHHCCSCEEEEEEECTTCS-SHHHHHHHHHHH
T ss_pred             HHHhcCCCeEEEEEECCCCc-chHHHHHHHHHH
Confidence            33443334457779999999 999888777643

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=80.06  E-value=0.64  Score=37.97  Aligned_cols=32  Identities=16%  Similarity=0.121  Sum_probs=27.1

Q ss_pred             CCcEEEECCChHHHHHHHHHHhCC--CcEEEEEc
Q psy14461        241 PGKTLVLGGSLMAVEIAATLNFLG--VPVTLVYS  272 (535)
Q Consensus       241 ~k~vvViGgG~~g~e~A~~l~~~g--~~Vtlv~~  272 (535)
                      .|+|+|||+|.+|..+|..|...|  .++.+++.
T Consensus         1 ~kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di   34 (146)
T d1hyha1           1 ARKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDA   34 (146)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECS
T ss_pred             CCeEEEECcCHHHHHHHHHHHhcCCCceEEEEec
Confidence            378999999999999999888776  37888765