Psyllid ID: psy14468

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------11
Protein Sequence
MTRSTSTALQAIFLSLDATELVKTFNYVHSDMKVPHERILEFPNILTSRRFRIENRHSYLKSLGRDQYDPCKENYVSMKSLVSGTDAEFCANVAKTTPETYNLFLKSL
Secondary Structure (PSIPRED)
cccccccEEEccEEEEcHHHHHHHHHHHHHHccccHHHHHHcHHHHccHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHccccHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHcHHHHHcHHHHHHHHHHHHHHHccccccccccccccHHHHccccHHHHHHHHHHccHHHHHHHHHcc
Coil and Loop (DISEMBL)
MTRSTSTALQAIFLSLDATELVKTFNYvhsdmkvpherilefpniltsrRFRIENRHSYLKSlgrdqydpckenyVSMKslvsgtdaefcANVAKTTPETYNLFLKSL
Flexible Loop (DISEMBL)
MTRSTSTALQAIFLSLDATELVKTFNYvhsdmkvpherilefpniltsrrfrIENRHSylkslgrdqydpCKENYVSMKSLVSGTDAEFCANVAKTTPETYNLFLKSL
Low Complexity Region (SEG)
MTRSTSTALQAIFLSLDATELVKTFNYVHSDMKVPHERILEFPNILTSRRFRIENRHSYLKSLGRDQYDPCKENYVSMKSLVSGTDAEFCANVAKTTPETYNLFLKSL
Disordered region (IsUnstruct)
********LQAIFLSLDATELVKTFNYVHSDMKVPHERILEFPNILTSRRFRIENRHSYLKSLGRDQYDPCKENYVSMKSLVSGTDAEFCANVAKTTPETYNLF****
Disordered Region (DISOPRED)
*********QAIFLSLDATELVKTFNYVHSDMKVPHERILEFPNILTSRRFRIENRHSYLKSLGRDQYDPCKENYVSMKSLVSGTDAEFCANVAKTTPETYNLFLKSL
Disordered Region (DISEMBL)
********LQAIFLSLDATELVKTFNYVHSDMKVPHERILEFPNILTSRRFRIENRHSYLKSLGRDQYDPCKENYVSMKSLVSGTDAEFCANVAKTTPETYNLFLKSL
Disordered Region (DISPRO)
*****STALQAIFLSLDATELVKTFNYVHSDMKVPHERILEFPNILTSRRFRIENRHSYLKSLGRDQYDPCKENYVSMKSLVSGTDAEFCANVAKTTPETYNLFLKSL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTRSTSTALQAIFLSLDATELVKTFNYVHSDMKVPHERILEFPNILTSRRFRIENRHSYLKSLGRDQYDPCKENYVSMKSLVSGTDAEFCANVAKTTPETYNLFLKSL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	108	2.2.26 [Sep-21-2011]
Q96E29	417	mTERF domain-containing p	yes	N/A	0.879	0.227	0.421	2e-19
Q6P6Q6	409	mTERF domain-containing p	yes	N/A	0.879	0.232	0.431	6e-19
Q8R3J4	412	mTERF domain-containing p	yes	N/A	0.879	0.230	0.431	1e-18
Q5ZJC8	405	mTERF domain-containing p	yes	N/A	0.888	0.237	0.395	6e-17

>sp|Q96E29|MTER1_HUMAN mTERF domain-containing protein 1, mitochondrial OS=Homo sapiens GN=MTERFD1 PE=1 SV=2

 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 40/95 (42%), Positives = 63/95 (66%)

Query: 14  LSLDATELVKTFNYVHSDMKVPHERILEFPNILTSRRFRIENRHSYLKSLGRDQYDPCKE 73
           L+ +  +L +TF++VH+ M +PH  I++FP +  +R F+++ RH +L  LGR QYDP K 
Sbjct: 323 LTANKMKLTETFDFVHNVMSIPHHIIVKFPQVFNTRLFKVKERHLFLTYLGRAQYDPAKP 382

Query: 74  NYVSMKSLVSGTDAEFCANVAKTTPETYNLFLKSL 108
           NY+S+  LVS  D  FC  +AK + + +  FLK+L
Sbjct: 383 NYISLDKLVSIPDEIFCEEIAKASVQDFEKFLKTL 417

Binds promoter DNA and regulates initiation of transcription. Required for normal mitochondrial transcription, and for normal assembly of mitochondrial respiratory complexes. Required for normal mitochondrial function.
Homo sapiens (taxid: 9606)

>sp|Q6P6Q6|MTER1_RAT mTERF domain-containing protein 1, mitochondrial OS=Rattus norvegicus GN=Mterfd1 PE=2 SV=1

 Score = 92.8 bits (229), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 41/95 (43%), Positives = 61/95 (64%)

Query: 14  LSLDATELVKTFNYVHSDMKVPHERILEFPNILTSRRFRIENRHSYLKSLGRDQYDPCKE 73
           L+ +  +L +TF+YVH+ M +PH  I++FP +  +R F+I+ RH +L  LG+ QYDP K 
Sbjct: 315 LTANKRKLTETFDYVHNVMNIPHHIIVKFPQVFNTRVFKIKERHLFLAYLGKAQYDPAKP 374

Query: 74  NYVSMKSLVSGTDAEFCANVAKTTPETYNLFLKSL 108
           NYVS+   VS  D  FC  +AK +   +  FLK+L
Sbjct: 375 NYVSLDKFVSFPDEVFCKEIAKASVNDFEKFLKTL 409

Binds promoter DNA and regulates initiation of transcription. Required for normal mitochondrial transcription, and for normal assembly of mitochondrial respiratory complexes. Required for normal mitochondrial function.

Rattus norvegicus (taxid: 10116)

>sp|Q8R3J4|MTER1_MOUSE mTERF domain-containing protein 1, mitochondrial OS=Mus musculus GN=Mterfd1 PE=2 SV=1

 Score = 91.3 bits (225), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 41/95 (43%), Positives = 60/95 (63%)

Query: 14  LSLDATELVKTFNYVHSDMKVPHERILEFPNILTSRRFRIENRHSYLKSLGRDQYDPCKE 73
           L+ +  +L + F+YVH+ M +PH  I++FP +  +R F+I+ RH +L  LGR QYDP K 
Sbjct: 318 LTANKRKLTEIFDYVHNVMNIPHHIIVKFPQLFNTRVFKIKERHLFLAYLGRAQYDPAKP 377

Query: 74  NYVSMKSLVSGTDAEFCANVAKTTPETYNLFLKSL 108
           NYVS+   VS  D  FC  +AK +   +  FLK+L
Sbjct: 378 NYVSLDKFVSFPDKIFCKEIAKASLNDFEKFLKTL 412

Binds promoter DNA (By similarity). Regulates initiation of transcription. Required for normal mitochondrial transcription, and for normal assembly of mitochondrial respiratory complexes. Required for normal mitochondrial function.

Mus musculus (taxid: 10090)

>sp|Q5ZJC8|MTER1_CHICK mTERF domain-containing protein 1, mitochondrial OS=Gallus gallus GN=MTERFD1 PE=2 SV=1

 Score = 85.9 bits (211), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 38/96 (39%), Positives = 58/96 (60%)

Query: 13  FLSLDATELVKTFNYVHSDMKVPHERILEFPNILTSRRFRIENRHSYLKSLGRDQYDPCK 72
            L+     L +TF+Y+H+ M +PH  +  FP +  S+  RI+ RH +L  LGR QYDP K
Sbjct: 310 ILTASKKRLRQTFDYLHNIMGIPHNMLTRFPQVFNSKLLRIKERHMFLIFLGRAQYDPTK 369

Query: 73  ENYVSMKSLVSGTDAEFCANVAKTTPETYNLFLKSL 108
            +Y+S+  LVS  D  FC  +AK + + +  FLK++
Sbjct: 370 PSYISLDQLVSLPDEVFCTEIAKASMQDFEKFLKTI 405

Binds promoter DNA and regulates initiation of transcription. Required for normal mitochondrial transcription, and for normal assembly of mitochondrial respiratory complexes. Required for normal mitochondrial function.

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	108
357612407	310	hypothetical protein KGM_08456 [Danaus p	0.861	0.3	0.537	5e-23
239793389	169	ACYPI006856 [Acyrthosiphon pisum]	0.814	0.520	0.534	3e-21
326368253	340	mTERF domain-containing protein 1, mitoc	0.805	0.255	0.540	4e-21
241260153	411	transcription termination factor, mTERF,	0.814	0.214	0.488	5e-21
195480088	350	GE22739 [Drosophila yakuba] gi|194186425	0.879	0.271	0.484	8e-20
157118757	358	hypothetical protein AaeL_AAEL008392 [Ae	0.953	0.287	0.458	9e-20
195348303	354	GM22204 [Drosophila sechellia] gi|194122	0.879	0.268	0.473	1e-19
21355881	354	mTerf3 [Drosophila melanogaster] gi|7296	0.879	0.268	0.473	1e-19
194875022	353	GG13303 [Drosophila erecta] gi|190655292	0.879	0.269	0.473	3e-19
312376735	297	hypothetical protein AND_12337 [Anophele	0.925	0.336	0.45	5e-19

>gi|357612407|gb|EHJ67976.1| hypothetical protein KGM_08456 [Danaus plexippus]

 Score =  111 bits (278), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 50/93 (53%), Positives = 66/93 (70%)

Query: 16  LDATELVKTFNYVHSDMKVPHERILEFPNILTSRRFRIENRHSYLKSLGRDQYDPCKENY 75
           ++   LV+ F Y+H++M++PH  IL+ P IL  R F I+ RHS+LKSLGR QYDP KENY
Sbjct: 218 INQKALVQRFQYIHNEMQIPHNTILQQPGILLCRNFIIKQRHSFLKSLGRAQYDPTKENY 277

Query: 76  VSMKSLVSGTDAEFCANVAKTTPETYNLFLKSL 108
           V + +L  GTD EFC + AK T + YN FLK+L
Sbjct: 278 VPILALFKGTDLEFCKDYAKCTIDVYNTFLKTL 310

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|239793389|dbj|BAH72819.1| ACYPI006856 [Acyrthosiphon pisum]

 Score =  105 bits (263), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 47/88 (53%), Positives = 63/88 (71%)

Query: 20  ELVKTFNYVHSDMKVPHERILEFPNILTSRRFRIENRHSYLKSLGRDQYDPCKENYVSMK 79
            L++ FNY+H  M + H+RI+  P +LTSR FRI+ RH YL+ L R QYDP K NYV + 
Sbjct: 80  HLLQRFNYIHHTMDINHDRIVFEPQVLTSRLFRIKQRHEYLQYLNRAQYDPTKPNYVPLS 139

Query: 80  SLVSGTDAEFCANVAKTTPETYNLFLKS 107
            LVSG D+EFC N+AKT+ E +N +LK+
Sbjct: 140 KLVSGDDSEFCINLAKTSVEMFNTYLKT 167

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|326368253|ref|NP_001191905.1| mTERF domain-containing protein 1, mitochondrial [Acyrthosiphon pisum]

 Score =  105 bits (261), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 47/87 (54%), Positives = 63/87 (72%)

Query: 21  LVKTFNYVHSDMKVPHERILEFPNILTSRRFRIENRHSYLKSLGRDQYDPCKENYVSMKS 80
           L++ FNY+H  M + H+RI+  P +LTSR FRI+ RH YL+ L R QYDP K NYV +  
Sbjct: 252 LLQRFNYIHHTMDINHDRIVFEPQVLTSRLFRIKQRHEYLQYLNRAQYDPTKPNYVPLSK 311

Query: 81  LVSGTDAEFCANVAKTTPETYNLFLKS 107
           LVSG D+EFC N+AKT+ E +N +LK+
Sbjct: 312 LVSGDDSEFCINLAKTSVEMFNTYLKT 338

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241260153|ref|XP_002404930.1| transcription termination factor, mTERF, putative [Ixodes scapularis] gi|215496739|gb|EEC06379.1| transcription termination factor, mTERF, putative [Ixodes scapularis]

 Score =  105 bits (261), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 43/88 (48%), Positives = 70/88 (79%)

Query: 21  LVKTFNYVHSDMKVPHERILEFPNILTSRRFRIENRHSYLKSLGRDQYDPCKENYVSMKS 80
           +V+ F+Y+H+ M + H+++L+FP+I+ +R+  +  RH +L  LGRDQYD  + NYV++K+
Sbjct: 324 IVEAFDYLHNTMALSHDQLLKFPSIIRTRKCVLRPRHEFLAKLGRDQYDATQPNYVALKA 383

Query: 81  LVSGTDAEFCANVAKTTPETYNLFLKSL 108
           LVSG+DA+FC NVAKT+ +T+N FLK++
Sbjct: 384 LVSGSDADFCENVAKTSVDTFNQFLKTV 411

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195480088|ref|XP_002086635.1| GE22739 [Drosophila yakuba] gi|194186425|gb|EDX00037.1| GE22739 [Drosophila yakuba]

 Score =  100 bits (250), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 46/95 (48%), Positives = 66/95 (69%)

Query: 13  FLSLDATELVKTFNYVHSDMKVPHERILEFPNILTSRRFRIENRHSYLKSLGRDQYDPCK 72
            L +   +LV+ F+YVH DM +PH +I++ P +L SR FR+  RH +LK LGR QYDP K
Sbjct: 255 LLMISPDDLVERFSYVHQDMGLPHTQIVQCPELLASREFRLRERHEFLKLLGRAQYDPQK 314

Query: 73  ENYVSMKSLVSGTDAEFCANVAKTTPETYNLFLKS 107
           + Y+S K++V G +  F  NVAK+  ET++LFLK+
Sbjct: 315 DLYISPKTIVEGNNFYFIRNVAKSDLETFDLFLKT 349

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157118757|ref|XP_001653246.1| hypothetical protein AaeL_AAEL008392 [Aedes aegypti] gi|108875625|gb|EAT39850.1| AAEL008392-PA [Aedes aegypti]

 Score =  100 bits (250), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 50/109 (45%), Positives = 70/109 (64%), Gaps = 6/109 (5%)

Query: 6   STALQAIFLS------LDATELVKTFNYVHSDMKVPHERILEFPNILTSRRFRIENRHSY 59
            T ++ + LS      ++  +L+  F+YVH  M+VPH  IL+ P IL SR  RI+ RH +
Sbjct: 250 QTEMKTLLLSKPKLWMINQDKLLHRFDYVHRRMQVPHREILKTPEILESRDHRIKQRHGF 309

Query: 60  LKSLGRDQYDPCKENYVSMKSLVSGTDAEFCANVAKTTPETYNLFLKSL 108
           LK LG+ QYDP K+ Y+S+KSLV GTD EF  + AK+  E Y  +LK+L
Sbjct: 310 LKFLGKAQYDPQKDLYISLKSLVEGTDEEFVIHTAKSNMECYENYLKTL 358

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195348303|ref|XP_002040688.1| GM22204 [Drosophila sechellia] gi|194122198|gb|EDW44241.1| GM22204 [Drosophila sechellia]

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 45/95 (47%), Positives = 66/95 (69%)

Query: 13  FLSLDATELVKTFNYVHSDMKVPHERILEFPNILTSRRFRIENRHSYLKSLGRDQYDPCK 72
            L +   +LV+ F+Y+H DM +PH +I++ P +L SR FR+  RH +LK LGR QYDP K
Sbjct: 259 LLMIPPDDLVERFSYIHQDMGLPHAQIVQCPELLASREFRLRERHEFLKLLGRAQYDPQK 318

Query: 73  ENYVSMKSLVSGTDAEFCANVAKTTPETYNLFLKS 107
           + Y+S K++V G +  F  NVAK+  ET++LFLK+
Sbjct: 319 DLYISPKTIVEGNNFYFVRNVAKSDLETFDLFLKT 353

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|21355881|ref|NP_649240.1| mTerf3 [Drosophila melanogaster] gi|7296330|gb|AAF51620.1| mTerf3 [Drosophila melanogaster] gi|15291799|gb|AAK93168.1| LD27042p [Drosophila melanogaster] gi|220956808|gb|ACL90947.1| mTerf3-PA [synthetic construct]

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 45/95 (47%), Positives = 66/95 (69%)

Query: 13  FLSLDATELVKTFNYVHSDMKVPHERILEFPNILTSRRFRIENRHSYLKSLGRDQYDPCK 72
            L +   +LV+ F+Y+H DM +PH +I++ P +L SR FR+  RH +LK LGR QYDP K
Sbjct: 259 LLMIPPDDLVERFSYIHQDMGLPHAQIVQCPELLASREFRLRERHEFLKLLGRAQYDPQK 318

Query: 73  ENYVSMKSLVSGTDAEFCANVAKTTPETYNLFLKS 107
           + Y+S K++V G +  F  NVAK+  ET++LFLK+
Sbjct: 319 DLYISPKTIVEGNNFYFVRNVAKSDLETFDLFLKT 353

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194875022|ref|XP_001973509.1| GG13303 [Drosophila erecta] gi|190655292|gb|EDV52535.1| GG13303 [Drosophila erecta]

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 45/95 (47%), Positives = 65/95 (68%)

Query: 13  FLSLDATELVKTFNYVHSDMKVPHERILEFPNILTSRRFRIENRHSYLKSLGRDQYDPCK 72
            L +   +LV+ F Y+H DM +PH +I++ P +L SR FR+  RH +LK LGR QYDP K
Sbjct: 258 LLMISPDDLVERFCYIHQDMGLPHAQIVQCPELLASREFRLRERHEFLKLLGRAQYDPQK 317

Query: 73  ENYVSMKSLVSGTDAEFCANVAKTTPETYNLFLKS 107
           + Y+S K++V G +  F  NVAK+  ET++LFLK+
Sbjct: 318 DLYISPKTIVEGNNFYFIRNVAKSDLETFDLFLKT 352

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312376735|gb|EFR23737.1| hypothetical protein AND_12337 [Anopheles darlingi]

 Score = 98.2 bits (243), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 45/100 (45%), Positives = 67/100 (67%)

Query: 9   LQAIFLSLDATELVKTFNYVHSDMKVPHERILEFPNILTSRRFRIENRHSYLKSLGRDQY 68
            Q  F  ++   L   F+Y+H  MK+ H++IL+ P++L +R FRI+ RH +LK LG+ QY
Sbjct: 198 FQKNFQLVETEALQYRFDYIHRRMKLTHDQILKTPDLLLTRDFRIKQRHEFLKFLGKTQY 257

Query: 69  DPCKENYVSMKSLVSGTDAEFCANVAKTTPETYNLFLKSL 108
           DP +E Y+ +KSL +GTD +F   +AK+  E YN FLK+L
Sbjct: 258 DPKQELYIPLKSLAAGTDEQFVTEIAKSNMECYNRFLKTL 297

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	108
FB|FBgn0037008	354	mTerf3 [Drosophila melanogaste	0.870	0.265	0.478	8e-21
UNIPROTKB|F1RY61	414	MTERFD1 "Uncharacterized prote	0.879	0.229	0.442	7.4e-19
UNIPROTKB|G3V130	296	MTERFD1 "mTERF domain-containi	0.879	0.320	0.421	8.3e-19
UNIPROTKB|Q1LZE3	417	MTERFD1 "Uncharacterized prote	0.879	0.227	0.431	2.7e-18
UNIPROTKB|E2RL82	417	MTERFD1 "Uncharacterized prote	0.879	0.227	0.421	2.7e-18
UNIPROTKB|Q96E29	417	MTERFD1 "mTERF domain-containi	0.879	0.227	0.421	2.7e-18
RGD|735158	409	Mterfd1 "MTERF domain containi	0.879	0.232	0.431	4.3e-18
MGI|MGI:1913660	412	Mterfd1 "MTERF domain containi	0.879	0.230	0.431	2e-17
UNIPROTKB|F1P3M7	405	MTERFD1 "mTERF domain-containi	0.879	0.234	0.4	2.5e-16
UNIPROTKB|Q5ZJC8	405	MTERFD1 "mTERF domain-containi	0.879	0.234	0.4	2.5e-16

FB|FBgn0037008 mTerf3 [Drosophila melanogaster (taxid:7227)]

 Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
 Identities = 45/94 (47%), Positives = 66/94 (70%)

Query:    14 LSLDATELVKTFNYVHSDMKVPHERILEFPNILTSRRFRIENRHSYLKSLGRDQYDPCKE 73
             L +   +LV+ F+Y+H DM +PH +I++ P +L SR FR+  RH +LK LGR QYDP K+
Sbjct:   260 LMIPPDDLVERFSYIHQDMGLPHAQIVQCPELLASREFRLRERHEFLKLLGRAQYDPQKD 319

Query:    74 NYVSMKSLVSGTDAEFCANVAKTTPETYNLFLKS 107
              Y+S K++V G +  F  NVAK+  ET++LFLK+
Sbjct:   320 LYISPKTIVEGNNFYFVRNVAKSDLETFDLFLKT 353

GO:0006264 "mitochondrial DNA replication" evidence=IMP

GO:0006390 "transcription from mitochondrial promoter" evidence=IMP

GO:0032543 "mitochondrial translation" evidence=IMP

UNIPROTKB|F1RY61 MTERFD1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 231 (86.4 bits), Expect = 7.4e-19, P = 7.4e-19
 Identities = 42/95 (44%), Positives = 63/95 (66%)

Query:    14 LSLDATELVKTFNYVHSDMKVPHERILEFPNILTSRRFRIENRHSYLKSLGRDQYDPCKE 73
             L+ +  +L +TF+YVH+ M++PH  I+ FP +  +R F+I+ RH +L  LGR QYDP K 
Sbjct:   320 LTANKRKLTETFDYVHNVMRIPHHVIVRFPQVFNTRLFKIKERHLFLAYLGRAQYDPAKP 379

Query:    74 NYVSMKSLVSGTDAEFCANVAKTTPETYNLFLKSL 108
             NY+S+  LVS  D  FC  +AK + + +  FLK+L
Sbjct:   380 NYISLDKLVSMPDEIFCEEMAKASVQDFEKFLKTL 414

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|G3V130 MTERFD1 "mTERF domain-containing protein 1, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
 Identities = 40/95 (42%), Positives = 63/95 (66%)

Query:    14 LSLDATELVKTFNYVHSDMKVPHERILEFPNILTSRRFRIENRHSYLKSLGRDQYDPCKE 73
             L+ +  +L +TF++VH+ M +PH  I++FP +  +R F+++ RH +L  LGR QYDP K 
Sbjct:   202 LTANKMKLTETFDFVHNVMSIPHHIIVKFPQVFNTRLFKVKERHLFLTYLGRAQYDPAKP 261

Query:    74 NYVSMKSLVSGTDAEFCANVAKTTPETYNLFLKSL 108
             NY+S+  LVS  D  FC  +AK + + +  FLK+L
Sbjct:   262 NYISLDKLVSIPDEIFCEEIAKASVQDFEKFLKTL 296

GO:0005739 "mitochondrion" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|Q1LZE3 MTERFD1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 226 (84.6 bits), Expect = 2.7e-18, P = 2.7e-18
 Identities = 41/95 (43%), Positives = 63/95 (66%)

Query:    14 LSLDATELVKTFNYVHSDMKVPHERILEFPNILTSRRFRIENRHSYLKSLGRDQYDPCKE 73
             L+ +  +L +TF+YVH+ M+VPH  I+ FP +  +R F+++ RH +L  LGR QYDP + 
Sbjct:   323 LTANKRKLTETFDYVHNVMRVPHHVIVRFPQVFNTRLFKVKERHLFLAYLGRAQYDPTEP 382

Query:    74 NYVSMKSLVSGTDAEFCANVAKTTPETYNLFLKSL 108
             NY+S+  LVS  D  FC  +AK + + +  FLK+L
Sbjct:   383 NYISLDKLVSVPDGIFCEGMAKASIQDFEKFLKTL 417

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|E2RL82 MTERFD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 226 (84.6 bits), Expect = 2.7e-18, P = 2.7e-18
 Identities = 40/95 (42%), Positives = 61/95 (64%)

Query:    14 LSLDATELVKTFNYVHSDMKVPHERILEFPNILTSRRFRIENRHSYLKSLGRDQYDPCKE 73
             L+ +  +L +TF+YVH+ M +PH  I+ FP +  +R F+++ RH +L  LGR QYDP K 
Sbjct:   323 LTANKRKLTETFDYVHNVMNIPHHLIVRFPQVFNTRLFKVKERHLFLTYLGRAQYDPTKP 382

Query:    74 NYVSMKSLVSGTDAEFCANVAKTTPETYNLFLKSL 108
             NY+S+   VS  D  FC  +AK + + +  FLK+L
Sbjct:   383 NYISLDKFVSVPDEIFCEEIAKASVQDFEKFLKTL 417

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|Q96E29 MTERFD1 "mTERF domain-containing protein 1, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 226 (84.6 bits), Expect = 2.7e-18, P = 2.7e-18
 Identities = 40/95 (42%), Positives = 63/95 (66%)

Query:    14 LSLDATELVKTFNYVHSDMKVPHERILEFPNILTSRRFRIENRHSYLKSLGRDQYDPCKE 73
             L+ +  +L +TF++VH+ M +PH  I++FP +  +R F+++ RH +L  LGR QYDP K 
Sbjct:   323 LTANKMKLTETFDFVHNVMSIPHHIIVKFPQVFNTRLFKVKERHLFLTYLGRAQYDPAKP 382

Query:    74 NYVSMKSLVSGTDAEFCANVAKTTPETYNLFLKSL 108
             NY+S+  LVS  D  FC  +AK + + +  FLK+L
Sbjct:   383 NYISLDKLVSIPDEIFCEEIAKASVQDFEKFLKTL 417

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0005739 "mitochondrion" evidence=IDA

RGD|735158 Mterfd1 "MTERF domain containing 1" [Rattus norvegicus (taxid:10116)]

 Score = 224 (83.9 bits), Expect = 4.3e-18, P = 4.3e-18
 Identities = 41/95 (43%), Positives = 61/95 (64%)

Query:    14 LSLDATELVKTFNYVHSDMKVPHERILEFPNILTSRRFRIENRHSYLKSLGRDQYDPCKE 73
             L+ +  +L +TF+YVH+ M +PH  I++FP +  +R F+I+ RH +L  LG+ QYDP K 
Sbjct:   315 LTANKRKLTETFDYVHNVMNIPHHIIVKFPQVFNTRVFKIKERHLFLAYLGKAQYDPAKP 374

Query:    74 NYVSMKSLVSGTDAEFCANVAKTTPETYNLFLKSL 108
             NYVS+   VS  D  FC  +AK +   +  FLK+L
Sbjct:   375 NYVSLDKFVSFPDEVFCKEIAKASVNDFEKFLKTL 409

GO:0005739 "mitochondrion" evidence=ISO;ISS

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=ISO;ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISO;ISS

MGI|MGI:1913660 Mterfd1 "MTERF domain containing 1" [Mus musculus (taxid:10090)]

 Score = 218 (81.8 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 41/95 (43%), Positives = 60/95 (63%)

Query:    14 LSLDATELVKTFNYVHSDMKVPHERILEFPNILTSRRFRIENRHSYLKSLGRDQYDPCKE 73
             L+ +  +L + F+YVH+ M +PH  I++FP +  +R F+I+ RH +L  LGR QYDP K 
Sbjct:   318 LTANKRKLTEIFDYVHNVMNIPHHIIVKFPQLFNTRVFKIKERHLFLAYLGRAQYDPAKP 377

Query:    74 NYVSMKSLVSGTDAEFCANVAKTTPETYNLFLKSL 108
             NYVS+   VS  D  FC  +AK +   +  FLK+L
Sbjct:   378 NYVSLDKFVSFPDKIFCKEIAKASLNDFEKFLKTL 412

GO:0003677 "DNA binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=ISO

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISO;IMP

UNIPROTKB|F1P3M7 MTERFD1 "mTERF domain-containing protein 1, mitochondrial" [Gallus gallus (taxid:9031)]

 Score = 208 (78.3 bits), Expect = 2.5e-16, P = 2.5e-16
 Identities = 38/95 (40%), Positives = 58/95 (61%)

Query:    14 LSLDATELVKTFNYVHSDMKVPHERILEFPNILTSRRFRIENRHSYLKSLGRDQYDPCKE 73
             L+     L +TF+Y+H+ M +PH  +  FP +  S+  RI+ RH +L  LGR QYDP K 
Sbjct:   311 LTASKKRLRQTFDYLHNIMGIPHNMLTRFPQVFNSKLLRIKERHMFLIFLGRAQYDPTKP 370

Query:    74 NYVSMKSLVSGTDAEFCANVAKTTPETYNLFLKSL 108
             +Y+S+  LVS  D  FC  +AK + + +  FLK++
Sbjct:   371 SYISLDQLVSLPDEVFCTEIAKASMQDFEKFLKTI 405

GO:0005739 "mitochondrion" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|Q5ZJC8 MTERFD1 "mTERF domain-containing protein 1, mitochondrial" [Gallus gallus (taxid:9031)]

 Score = 208 (78.3 bits), Expect = 2.5e-16, P = 2.5e-16
 Identities = 38/95 (40%), Positives = 58/95 (61%)

Query:    14 LSLDATELVKTFNYVHSDMKVPHERILEFPNILTSRRFRIENRHSYLKSLGRDQYDPCKE 73
             L+     L +TF+Y+H+ M +PH  +  FP +  S+  RI+ RH +L  LGR QYDP K 
Sbjct:   311 LTASKKRLRQTFDYLHNIMGIPHNMLTRFPQVFNSKLLRIKERHMFLIFLGRAQYDPTKP 370

Query:    74 NYVSMKSLVSGTDAEFCANVAKTTPETYNLFLKSL 108
             +Y+S+  LVS  D  FC  +AK + + +  FLK++
Sbjct:   371 SYISLDQLVSLPDEVFCTEIAKASMQDFEKFLKTI 405

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	108
PLN03196	487	MOC1-like protein; Provisional	99.39
PF02536	345	mTERF: mTERF; InterPro: IPR003690 This family curr	99.33
KOG1267|consensus	413		97.44
smart00733	31	Mterf Mitochondrial termination factor repeats. Hu	96.81
PLN03196	487	MOC1-like protein; Provisional	96.04
PF02536	345	mTERF: mTERF; InterPro: IPR003690 This family curr	95.39
smart00733	31	Mterf Mitochondrial termination factor repeats. Hu	94.17
KOG1267|consensus	413		93.62

>PLN03196 MOC1-like protein; Provisional

Probab=99.39  E-value=3.1e-13  Score=114.33  Aligned_cols=82  Identities=21%  Similarity=0.297  Sum_probs=75.1

Q ss_pred             HhHhhhhcChhhHHHHHHHHHHhhCCChhhHhhhhhhhhccHH-HHHHHHHHHHHhCCcCCCCCCCCcccccccccCChH
Q psy14468          9 LQAIFLSLDATELVKTFNYVHSDMKVPHERILEFPNILTSRRF-RIENRHSYLKSLGRDQYDPCKENYVSMKSLVSGTDA   87 (108)
Q Consensus         9 ~~~~ll~~~~~~L~~kf~Y~~~~M~i~~~~I~k~P~~l~~s~~-~Ir~RH~FL~~LGr~qyDP~~p~y~~L~~lv~~~D~   87 (108)
                      ..|.+|..+.++|..|++|++|+||.++++|+++|.+|.+|++ ||++||.+|+.-|.         ..+|..++..+|+
T Consensus       363 k~P~lL~~S~~~l~~k~dFlvneMg~~~~~Iv~fP~~LsySLEkRI~PR~~~L~~kGl---------~~sL~~~L~~sd~  433 (487)
T PLN03196        363 RCPQILALNLEIMKPSLEFFKKEMKRPLKELVEFPAYFTYGLESRIKPRYERVAKKGI---------KCSLAWFLNCSDD  433 (487)
T ss_pred             hCCceeeccHHHHHHHHHHHHHHhCCCHHHHHhChHHhccChhhhhHHHHHHHHHcCC---------CCCHHHHhccCHH
Confidence            4688999999999999999999999999999999999999965 99999999998887         3699999999999


Q ss_pred             HHHHHHhcCCHH
Q psy14468         88 EFCANVAKTTPE   99 (108)
Q Consensus        88 ~F~~~vA~~s~e   99 (108)
                      .|+++++.-..|
T Consensus       434 ~F~~r~v~~y~e  445 (487)
T PLN03196        434 KFEQRMSGDFIE  445 (487)
T ss_pred             HHHHHHhhhccc
Confidence            999998876544

>PF02536 mTERF: mTERF; InterPro: IPR003690 This family currently contains one sequence of known function human mitochondrial transcription termination factor (mTERF), a multizipper protein but binds to DNA as a monomer, with evidence pointing to intramolecular leucine zipper interactions []

Probab=99.33  E-value=5.2e-13  Score=105.07  Aligned_cols=76  Identities=33%  Similarity=0.424  Sum_probs=60.4

Q ss_pred             HhHhhhhcChhhHHHHHHHHHHhhCCChhhHhhhhhhhhccH-HHHHHH---HHHHHHhCCcCCCCCCCCcccccccccC
Q psy14468          9 LQAIFLSLDATELVKTFNYVHSDMKVPHERILEFPNILTSRR-FRIENR---HSYLKSLGRDQYDPCKENYVSMKSLVSG   84 (108)
Q Consensus         9 ~~~~ll~~~~~~L~~kf~Y~~~~M~i~~~~I~k~P~~l~~s~-~~Ir~R---H~FL~~LGr~qyDP~~p~y~~L~~lv~~   84 (108)
                      .+|+||..+.+.|.++++|++++||+++++|+++|.+|.+|+ .||++|   |.+|...|+       ..++||.+++..
T Consensus       266 ~~P~iL~~s~e~l~~k~~fl~~~m~~~~~~i~~~P~~l~~sLe~ri~PR~~~~~~l~~~g~-------~~~~sl~~~l~~  338 (345)
T PF02536_consen  266 RFPQILSYSIEKLKPKFEFLVKEMGLPLEEIVEFPQYLSYSLEKRIKPRYEVLKVLKSKGL-------IINPSLSSMLSC  338 (345)
T ss_dssp             HSGGGGGS-HHHHHHHHHHHHHCCT--HHHHHHSCHHHCS-HHHHHHHHHHHHHTT--TTT-------GGGGGS-HHHHH
T ss_pred             hCcchhhcchhhhhHHHHHHHHHhCcCHHHHhhCCceeEechhhhhhhHHHHHHHHHHCcC-------CCCCCHHHHhhc
Confidence            479999999999999999999999999999999999999996 589999   555555552       337999999999


Q ss_pred             ChHHHHH
Q psy14468         85 TDAEFCA   91 (108)
Q Consensus        85 ~D~~F~~   91 (108)
                      ||++|+.
T Consensus       339 s~~~F~~  345 (345)
T PF02536_consen  339 SDEEFLK  345 (345)
T ss_dssp             HHHHHT-
T ss_pred             cHHHhcC
Confidence            9999973

The precursors contain a mitochondrial targeting sequence, and the mature mTERF exhibits three leucine zippers, of which one is bipartite, and two widely spaced basic domains. Both basic domains and the three leucine zipper motifs are necessary for DNA binding. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers []. The rest of the family consists of hypothetical proteins none of which have any functional information.; PDB: 3M66_A 3OPG_A 3MVA_O 3MVB_O 3N7Q_A 3N6S_A.

>KOG1267|consensus

Probab=97.44  E-value=4.1e-05  Score=63.14  Aligned_cols=90  Identities=21%  Similarity=0.383  Sum_probs=70.9

Q ss_pred             HhhhhcChhhHHHHHHHHHHhhCCChhhHhhhhhhhhccHHHHHHHHHHHHHhCCcC----CCCCC-CCccc--cccccc
Q psy14468         11 AIFLSLDATELVKTFNYVHSDMKVPHERILEFPNILTSRRFRIENRHSYLKSLGRDQ----YDPCK-ENYVS--MKSLVS   83 (108)
Q Consensus        11 ~~ll~~~~~~L~~kf~Y~~~~M~i~~~~I~k~P~~l~~s~~~Ir~RH~FL~~LGr~q----yDP~~-p~y~~--L~~lv~   83 (108)
                      |.+|+.+.+.+..++.|+.+.   .++ +.++|++++++...|.+||+||..+|.--    ..++. |.++.  +..++.
T Consensus       291 P~~l~~s~~~~~~~~~~~~~~---~~~-~~k~p~~l~~s~~~l~~~ie~l~~~g~~~~q~~~~~~~~Pq~l~~s~~~~~~  366 (413)
T KOG1267|consen  291 PQILGYSVKKNLKTTEYLLKN---PKH-ILKFPQLLRSSEDKLKPRIEFLLSLGFSDVQILEMVKRFPQYLSFSLEKILK  366 (413)
T ss_pred             chheEeehhhhhHHHHHHHhc---chh-hhhhhhhhhccchhhhhhHHHHHHcCCcHHHHHHHHhhccHHhhhhHHhhhh
Confidence            788999999999999999999   333 99999999999999999999999999642    33444 65554  666888


Q ss_pred             CChHHHHHHHhc--CCHHHHHHH
Q psy14468         84 GTDAEFCANVAK--TTPETYNLF  104 (108)
Q Consensus        84 ~~D~~F~~~vA~--~s~eey~~F  104 (108)
                      ..++-+++.++.  ..+-.|..|
T Consensus       367 ~~~~~~~~~~~~p~~~~~~~p~~  389 (413)
T KOG1267|consen  367 RKYEYLLKGLLRPLSALVSFPAF  389 (413)
T ss_pred             hhHHHHHHHcCchHHHHhccchh
Confidence            888888888873  344444444

>smart00733 Mterf Mitochondrial termination factor repeats

Probab=96.81  E-value=0.00097  Score=34.53  Aligned_cols=28  Identities=29%  Similarity=0.516  Sum_probs=25.9

Q ss_pred             hHhhhhhhhhccHHHHHHHHHHHHHhCC
Q psy14468         38 RILEFPNILTSRRFRIENRHSYLKSLGR   65 (108)
Q Consensus        38 ~I~k~P~~l~~s~~~Ir~RH~FL~~LGr   65 (108)
                      .|.++|.+|.++...|++|..||+.+|.
T Consensus         3 ~~~~~P~il~~~~~~l~~~~~~l~~~g~   30 (31)
T smart00733        3 ILKKFPQILGYSEKKLKPKVEFLKELGF   30 (31)
T ss_pred             hhhhCcCcccccHHHhhHHHHHHHHcCC
Confidence            4788999999999999999999999985

Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.

>PLN03196 MOC1-like protein; Provisional

Probab=96.04  E-value=0.011  Score=50.57  Aligned_cols=54  Identities=15%  Similarity=0.292  Sum_probs=39.6

Q ss_pred             HhhhhcChhhHHHHHHHHHHhhCCChhhH----hhhhhhhhccHHHHHHHHHHHHH-hCC
Q psy14468         11 AIFLSLDATELVKTFNYVHSDMKVPHERI----LEFPNILTSRRFRIENRHSYLKS-LGR   65 (108)
Q Consensus        11 ~~ll~~~~~~L~~kf~Y~~~~M~i~~~~I----~k~P~~l~~s~~~Ir~RH~FL~~-LGr   65 (108)
                      |.++..+.+.+.++++|+.+ +|++.++|    .++|++|.+|...|+..-.||+. +|+
T Consensus       330 P~il~lSe~kl~~kvefL~~-~Gls~edI~~mv~k~P~lL~~S~~~l~~k~dFlvneMg~  388 (487)
T PLN03196        330 PQIVSLNRNVALKHVEFLRG-RGFSAQDVAKMVVRCPQILALNLEIMKPSLEFFKKEMKR  388 (487)
T ss_pred             chhhcccHHHHHHHHHHHHH-cCCCHHHHHHHHHhCCceeeccHHHHHHHHHHHHHHhCC
Confidence            55666666777777887765 78887777    57788888888888888887753 665

>PF02536 mTERF: mTERF; InterPro: IPR003690 This family currently contains one sequence of known function human mitochondrial transcription termination factor (mTERF), a multizipper protein but binds to DNA as a monomer, with evidence pointing to intramolecular leucine zipper interactions []

Probab=95.39  E-value=0.027  Score=44.43  Aligned_cols=55  Identities=24%  Similarity=0.432  Sum_probs=41.5

Q ss_pred             hHhhhhcChhhHHHHHHHHHHhhCCChhhH----hhhhhhhhccHHHHHHHHHHHHH-hCC
Q psy14468         10 QAIFLSLDATELVKTFNYVHSDMKVPHERI----LEFPNILTSRRFRIENRHSYLKS-LGR   65 (108)
Q Consensus        10 ~~~ll~~~~~~L~~kf~Y~~~~M~i~~~~I----~k~P~~l~~s~~~Ir~RH~FL~~-LGr   65 (108)
                      -|.++..+.+.+.++.+|+.. +|++.++|    .++|++|.++.++|+++-.||.. +|.
T Consensus       232 ~p~il~~~~~~l~~~i~~L~~-lG~s~~ei~~mv~~~P~iL~~s~e~l~~k~~fl~~~m~~  291 (345)
T PF02536_consen  232 FPQILSLSEEKLKPKIEFLQS-LGFSEEEIAKMVRRFPQILSYSIEKLKPKFEFLVKEMGL  291 (345)
T ss_dssp             -----THHHHHHHHHHHHHHT-TT--HHHHHHHHHHSGGGGGS-HHHHHHHHHHHHHCCT-
T ss_pred             cccccccchHhHHHHHHHHHH-hcCcHHHHHHHHHhCcchhhcchhhhhHHHHHHHHHhCc
Confidence            467788888899999999998 99999998    57999999999999999999964 665

The precursors contain a mitochondrial targeting sequence, and the mature mTERF exhibits three leucine zippers, of which one is bipartite, and two widely spaced basic domains. Both basic domains and the three leucine zipper motifs are necessary for DNA binding. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers []. The rest of the family consists of hypothetical proteins none of which have any functional information.; PDB: 3M66_A 3OPG_A 3MVA_O 3MVB_O 3N7Q_A 3N6S_A.

>smart00733 Mterf Mitochondrial termination factor repeats

Probab=94.17  E-value=0.038  Score=28.27  Aligned_cols=25  Identities=8%  Similarity=0.244  Sum_probs=22.6

Q ss_pred             hHhhhhcChhhHHHHHHHHHHhhCCC
Q psy14468         10 QAIFLSLDATELVKTFNYVHSDMKVP   35 (108)
Q Consensus        10 ~~~ll~~~~~~L~~kf~Y~~~~M~i~   35 (108)
                      -|.+|..+.+.|.++++|+. .||++
T Consensus         7 ~P~il~~~~~~l~~~~~~l~-~~g~~   31 (31)
T smart00733        7 FPQILGYSEKKLKPKVEFLK-ELGFS   31 (31)
T ss_pred             CcCcccccHHHhhHHHHHHH-HcCCC
Confidence            48899999999999999999 99975

Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.

>KOG1267|consensus

Probab=93.62  E-value=0.072  Score=44.03  Aligned_cols=55  Identities=24%  Similarity=0.452  Sum_probs=49.4

Q ss_pred             HhhhhcChh-hHHHHHHHHHHhhCCChhhHhhhhhhhhcc-HHHHHHHHHHHHHhCC
Q psy14468         11 AIFLSLDAT-ELVKTFNYVHSDMKVPHERILEFPNILTSR-RFRIENRHSYLKSLGR   65 (108)
Q Consensus        11 ~~ll~~~~~-~L~~kf~Y~~~~M~i~~~~I~k~P~~l~~s-~~~Ir~RH~FL~~LGr   65 (108)
                      |+++..+.+ .+..++.|....|+.+.+.++.+|++|.++ ..+|++||....++|.
T Consensus       354 Pq~l~~s~~~~~~~~~~~~~~~~~~p~~~~~~~p~~~~y~le~ri~pr~~~~~~~~~  410 (413)
T KOG1267|consen  354 PQYLSFSLEKILKRKYEYLLKGLLRPLSALVSFPAFFGYSLEKRIRPRFNVIKKLGV  410 (413)
T ss_pred             cHHhhhhHHhhhhhhHHHHHHHcCchHHHHhccchhhccchhhcchhHHHHHHHHhc
Confidence            666666666 888999999999999999999999999999 8999999999988875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	108
3m66_A	270	Crystal Structure Of Human Mitochondrial Transcript		2e-20
3opg_A	298	Crystal Structure Of Human Mitochondrial Transcript		2e-20
4fzv_B	239	Crystal Structure Of The Human Mterf4:nsun4:sam Ter		6e-04
4fp9_B	335	Human Mterf4-Nsun4 Protein Complex Length = 335		8e-04

>pdb|3M66|A Chain A, Crystal Structure Of Human Mitochondrial Transcription Termination Factor 3 Length = 270

Iteration: 1
 Score = 94.0 bits (232), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 40/95 (42%), Positives = 63/95 (66%)
Query: 14  LSLDATELVKTFNYVHSDMKVPHERILEFPNILTSRRFRIENRHSYLKSLGRDQYDPCKE 73
           L+ +  +L +TF++VH+ M +PH  I++FP +  +R F+++ RH +L  LGR QYDP K 
Sbjct: 176 LTANKMKLTETFDFVHNVMSIPHHIIVKFPQVFNTRLFKVKERHLFLTYLGRAQYDPAKP 235
Query: 74  NYVSMKSLVSGTDAEFCANVAKTTPETYNLFLKSL 108
           NY+S+  LVS  D  FC  +AK + + +  FLK+L
Sbjct: 236 NYISLDKLVSIPDEIFCEEIAKASVQDFEKFLKTL 270

>pdb|3OPG|A Chain A, Crystal Structure Of Human Mitochondrial Transcription Termination Factor 3 Length = 298

Iteration: 1
 Score = 94.0 bits (232), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 40/95 (42%), Positives = 63/95 (66%)
Query: 14  LSLDATELVKTFNYVHSDMKVPHERILEFPNILTSRRFRIENRHSYLKSLGRDQYDPCKE 73
           L+ +  +L +TF++VH+ M +PH  I++FP +  +R F+++ RH +L  LGR QYDP K 
Sbjct: 204 LTANKMKLTETFDFVHNVMSIPHHIIVKFPQVFNTRLFKVKERHLFLTYLGRAQYDPAKP 263
Query: 74  NYVSMKSLVSGTDAEFCANVAKTTPETYNLFLKSL 108
           NY+S+  LVS  D  FC  +AK + + +  FLK+L
Sbjct: 264 NYISLDKLVSIPDEIFCEEIAKASVQDFEKFLKTL 298

>pdb|4FZV|B Chain B, Crystal Structure Of The Human Mterf4:nsun4:sam Ternary Complex Length = 239

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 17/102 (16%)
Query: 17  DATELVKTFNYVHSDMKVPHERILEFPNILTSRRF-----RIENRHSYLKSLGRDQYDPC 71
           D  +L   F Y +  M + H      P+I+ S        +I+ RH YL+ LGR Q  P 
Sbjct: 135 DLGQLEYKFQYAYFRMGIKH------PDIVKSEYLQYSLTKIKQRHIYLERLGRYQ-TPD 187
Query: 72  KENYVS-----MKSLVSGTDAEFCANVAKTTPETYNLFLKSL 108
           K+         +K ++  ++AEF A  A T+ E + +F K L
Sbjct: 188 KKGQTQIPNPLLKDILRVSEAEFLARTACTSVEEFQVFKKLL 229

>pdb|4FP9|B Chain B, Human Mterf4-Nsun4 Protein Complex Length = 335

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 17/102 (16%)
Query: 17  DATELVKTFNYVHSDMKVPHERILEFPNILTSRRF-----RIENRHSYLKSLGRDQYDPC 71
           D  +L   F Y +  M + H      P+I+ S        +I+ RH YL+ LGR Q  P 
Sbjct: 180 DLGQLEYKFQYAYFRMGIKH------PDIVKSEYLQYSLTKIKQRHIYLERLGRYQ-TPD 232
Query: 72  KENYVS-----MKSLVSGTDAEFCANVAKTTPETYNLFLKSL 108
           K+         +K ++  ++AEF A  A T+ E + +F K L
Sbjct: 233 KKGQTQIPNPLLKDILRVSEAEFLARTACTSVEEFQVFKKLL 274

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	108
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	1e-28
3mva_O	343	Transcription termination factor, mitochondrial; a	1e-11

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A Length = 270

 Score =  103 bits (259), Expect = 1e-28
 Identities = 40/96 (41%), Positives = 63/96 (65%)

Query: 13  FLSLDATELVKTFNYVHSDMKVPHERILEFPNILTSRRFRIENRHSYLKSLGRDQYDPCK 72
            L+ +  +L +TF++VH+ M +PH  I++FP +  +R F+++ RH +L  LGR QYDP K
Sbjct: 175 MLTANKMKLTETFDFVHNVMSIPHHIIVKFPQVFNTRLFKVKERHLFLTYLGRAQYDPAK 234

Query: 73  ENYVSMKSLVSGTDAEFCANVAKTTPETYNLFLKSL 108
            NY+S+  LVS  D  FC  +AK + + +  FLK+L
Sbjct: 235 PNYISLDKLVSIPDEIFCEEIAKASVQDFEKFLKTL 270

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A* Length = 343

 Score = 58.9 bits (142), Expect = 1e-11
 Identities = 14/85 (16%), Positives = 34/85 (40%), Gaps = 8/85 (9%)

Query: 13  FLSLDATELVKTFNYVHSDMKVPHERILEFPNILTSRRFRIENRHSYLKSLGRDQYDPCK 72
            + L   +     + +  +  +   +I+E P +L S    +++R   L + G    +   
Sbjct: 267 VIFLAEKKFNDKIDCLM-EENISISQIIENPRVLDSSISTLKSRIKELVNAG---CNLST 322

Query: 73  ENYVSMKSLVSGTDAEFCANVAKTT 97
            N     +L+S +   + A + K +
Sbjct: 323 LNI----TLLSWSKKRYEAKLKKLS 343

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	108
4fp9_B	335	Mterf domain-containing protein 2; modification en	100.0
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	99.95
4fzv_B	239	Mterf domain-containing protein 2; mterf fold, met	99.91
3mva_O	343	Transcription termination factor, mitochondrial; a	99.6
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	97.65
3mva_O	343	Transcription termination factor, mitochondrial; a	96.77
4fp9_B	335	Mterf domain-containing protein 2; modification en	96.2

>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}

Probab=100.00  E-value=1.2e-33  Score=227.33  Aligned_cols=98  Identities=31%  Similarity=0.388  Sum_probs=94.2

Q ss_pred             hHhhhhcChhhHHHHHHHHHHhhCCChhhHhhhhhhhhccHHHHHHHHHHHHHhCCcCCCCCCCC----cccccccccCC
Q psy14468         10 QAIFLSLDATELVKTFNYVHSDMKVPHERILEFPNILTSRRFRIENRHSYLKSLGRDQYDPCKEN----YVSMKSLVSGT   85 (108)
Q Consensus        10 ~~~ll~~~~~~L~~kf~Y~~~~M~i~~~~I~k~P~~l~~s~~~Ir~RH~FL~~LGr~qyDP~~p~----y~~L~~lv~~~   85 (108)
                      .|+||..+.+.|++||+|++++||+++.+|++ |++|+||+.|||+||.||++||+|||+|++|+    ||+|++||++|
T Consensus       173 ~P~lL~~S~e~L~~K~efLv~~Mgl~~~eIvk-P~~l~ySLeRIkpRH~fL~~lG~~q~~~~k~~~~~~npsL~~il~~s  251 (335)
T 4fp9_B          173 CPSVLREDLGQLEYKFQYAYFRMGIKHPDIVK-SEYLQYSLTKIKQRHIYLERLGRYQTPDKKGQTQIPNPLLKDILRVS  251 (335)
T ss_dssp             CGGGGTSCHHHHHHHHHHHHTTTCCCHHHHHH-TTGGGSCHHHHHHHHHHHHHHTSCCCCCSSSCCSSCCCCHHHHTTSC
T ss_pred             CChhhhCCHHHHHHHHHHHHHHhCCCHHHccc-cchhhccHHHHHHHHHHHHHcCCccCCCcccccCCCCccHHHHHcCC
Confidence            59999999999999999999999999999998 89999999999999999999999999999987    45799999999


Q ss_pred             hHHHHHHHhcCCHHHHHHHHhhC
Q psy14468         86 DAEFCANVAKTTPETYNLFLKSL  108 (108)
Q Consensus        86 D~~F~~~vA~~s~eey~~FlKtl  108 (108)
                      |++||++||++|+|+|++|+|||
T Consensus       252 d~~F~~~vA~~s~eey~~F~k~~  274 (335)
T 4fp9_B          252 EAEFLARTACTSVEEFQVFKKLL  274 (335)
T ss_dssp             HHHHHHHTSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHH
Confidence            99999999999999999999985

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A

Probab=99.95  E-value=1.9e-28  Score=187.42  Aligned_cols=99  Identities=40%  Similarity=0.801  Sum_probs=97.2

Q ss_pred             hHhhhhcChhhHHHHHHHHHHhhCCChhhHhhhhhhhhccHHHHHHHHHHHHHhCCcCCCCCCCCcccccccccCChHHH
Q psy14468         10 QAIFLSLDATELVKTFNYVHSDMKVPHERILEFPNILTSRRFRIENRHSYLKSLGRDQYDPCKENYVSMKSLVSGTDAEF   89 (108)
Q Consensus        10 ~~~ll~~~~~~L~~kf~Y~~~~M~i~~~~I~k~P~~l~~s~~~Ir~RH~FL~~LGr~qyDP~~p~y~~L~~lv~~~D~~F   89 (108)
                      .|.+|..+.++|.++++|++++||+++++|+++|.+|.+|++||++||.||+.||+.++||++++|++|.+++..||++|
T Consensus       172 ~P~il~~s~~~l~~k~~fL~~~mg~~~~~i~~~P~~l~~Sleri~pR~~~l~~L~~~g~~~~~~~~~~L~~~l~~sd~~F  251 (270)
T 3m66_A          172 IPKMLTANKMKLTETFDFVHNVMSIPHHIIVKFPQVFNTRLFKVKERHLFLTYLGRAQYDPAKPNYISLDKLVSIPDEIF  251 (270)
T ss_dssp             CGGGGTSCHHHHHHHHHHHHTTSCCCHHHHHHCGGGGGSCHHHHHHHHHHHHHHTCCCCCTTSSSCCCHHHHHHSCHHHH
T ss_pred             CChhheecHHHHHHHHHHHHHHhCCCHHHHHhCchHhhCCHHHHHHHHHHHHHhhccCCCCCCCCCCCHHHHhcCCHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCHHHHHHHHhhC
Q psy14468         90 CANVAKTTPETYNLFLKSL  108 (108)
Q Consensus        90 ~~~vA~~s~eey~~FlKtl  108 (108)
                      ++++|++|+|||++|+|||
T Consensus       252 ~~~~~~~~~eey~~f~k~~  270 (270)
T 3m66_A          252 CEEIAKASVQDFEKFLKTL  270 (270)
T ss_dssp             HHHTTCSCHHHHHHHHTTC
T ss_pred             HHHHhcCCHHHHHHHHhcC
Confidence            9999999999999999997

>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}

Probab=99.91  E-value=1.1e-24  Score=164.80  Aligned_cols=96  Identities=32%  Similarity=0.429  Sum_probs=91.9

Q ss_pred             HhhhhcChhhHHHHHHHHHHhhCCChhhHhhhhhhhhccHHHHHHHHHHHHHhCCcCCCCCCCC-----cccccccccCC
Q psy14468         11 AIFLSLDATELVKTFNYVHSDMKVPHERILEFPNILTSRRFRIENRHSYLKSLGRDQYDPCKEN-----YVSMKSLVSGT   85 (108)
Q Consensus        11 ~~ll~~~~~~L~~kf~Y~~~~M~i~~~~I~k~P~~l~~s~~~Ir~RH~FL~~LGr~qyDP~~p~-----y~~L~~lv~~~   85 (108)
                      |.++-.|-..|++||+|.+++|||.|.+|+++ +++.+|+.+|++||.+|++|||+|+ |++.+     ||-|++|+..+
T Consensus       129 psvlredlgqleykfqyayfrmgikhpdivks-eylqysltkikqrhiylerlgryqt-pdkkgqtqipnpllkdilrvs  206 (239)
T 4fzv_B          129 PSVLREDLGQLEYKFQYAYFRMGIKHPDIVKS-EYLQYSLTKIKQRHIYLERLGRYQT-PDKKGQTQIPNPLLKDILRVS  206 (239)
T ss_dssp             GGGGTSCTTHHHHHHHHHHHTSCCCHHHHHHT-TGGGSCHHHHHHHHHHHHHHTCCCC-CCSSSCCSSCCCCHHHHHTSC
T ss_pred             cHHHHHHHhhhhhhHhHHHHHccCCCcchhHH-HHHHHHHHHHHHHHhHHHHhcccCC-CCccCCccCCChHHHHHHHHh
Confidence            67888999999999999999999999999999 9999999999999999999999999 88875     89999999999


Q ss_pred             hHHHHHHHhcCCHHHHHHHHhhC
Q psy14468         86 DAEFCANVAKTTPETYNLFLKSL  108 (108)
Q Consensus        86 D~~F~~~vA~~s~eey~~FlKtl  108 (108)
                      +++|..+.|++|+|||.+|+|.|
T Consensus       207 eaeflartactsveefqvfkkll  229 (239)
T 4fzv_B          207 EAEFLARTACTSVEEFQVFKKLL  229 (239)
T ss_dssp             HHHHHHHTSCSCHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccHHHHHHHHHHH
Confidence            99999999999999999999975

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*

Probab=99.60  E-value=2.2e-15  Score=119.16  Aligned_cols=81  Identities=17%  Similarity=0.208  Sum_probs=72.2

Q ss_pred             HhHhhhhcChhhHHHHHHHHHHhhCCChhhHhhhhhhhhccHHHHHHHHHHHHHhCCcCCCCCCCCcccccccccCChHH
Q psy14468          9 LQAIFLSLDATELVKTFNYVHSDMKVPHERILEFPNILTSRRFRIENRHSYLKSLGRDQYDPCKENYVSMKSLVSGTDAE   88 (108)
Q Consensus         9 ~~~~ll~~~~~~L~~kf~Y~~~~M~i~~~~I~k~P~~l~~s~~~Ir~RH~FL~~LGr~qyDP~~p~y~~L~~lv~~~D~~   88 (108)
                      -.|.+|..+.+.|.++++|+++ ||+++++|+++|++|.+|+++|++||+||++.|.   ||..++    ..+++.||++
T Consensus       263 ~~P~il~~s~~~l~~k~~fl~~-mg~~~~~i~~~P~~l~~sleri~~R~~~L~~~g~---~~~~~~----~~~l~~s~~~  334 (343)
T 3mva_O          263 SYPDVIFLAEKKFNDKIDCLME-ENISISQIIENPRVLDSSISTLKSRIKELVNAGC---NLSTLN----ITLLSWSKKR  334 (343)
T ss_dssp             TCGGGGGSCHHHHHHHHHHHHT-TTCCHHHHHHSGGGGGSCHHHHHHHHHHHHTTTC---CSSSSC----GGGGGSCHHH
T ss_pred             hCCchhcccHHHHHHHHHHHHH-cCCCHHHHHhCCHHHhcCHHHHHHHHHHHHHCCC---CCCCCc----chhhcCCHHH
Confidence            3589999999999999999999 9999999999999999999999999999999884   454332    1899999999


Q ss_pred             HHHHHhcCC
Q psy14468         89 FCANVAKTT   97 (108)
Q Consensus        89 F~~~vA~~s   97 (108)
                      |++++++.+
T Consensus       335 F~~~~~~~~  343 (343)
T 3mva_O          335 YEAKLKKLS  343 (343)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHhccC
Confidence            999999864

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A

Probab=97.65  E-value=6.3e-05  Score=56.90  Aligned_cols=58  Identities=10%  Similarity=0.278  Sum_probs=52.6

Q ss_pred             HhHhhhhcChhhHHHHHHHHHHhhCCChhhH----hhhhhhhhccHHHHHHHHHHH-HHhCCc
Q psy14468          9 LQAIFLSLDATELVKTFNYVHSDMKVPHERI----LEFPNILTSRRFRIENRHSYL-KSLGRD   66 (108)
Q Consensus         9 ~~~~ll~~~~~~L~~kf~Y~~~~M~i~~~~I----~k~P~~l~~s~~~Ir~RH~FL-~~LGr~   66 (108)
                      ..|+++..+.+.+.++++|+..+||++.++|    .++|++|.+|..+|+++..|| ..+|.-
T Consensus       135 ~~P~il~~s~e~~~~~v~~l~~~~G~s~~ei~~~v~~~P~il~~s~~~l~~k~~fL~~~mg~~  197 (270)
T 3m66_A          135 RLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMITRIPKMLTANKMKLTETFDFVHNVMSIP  197 (270)
T ss_dssp             HSGGGGTSCSHHHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHTTSCCC
T ss_pred             hCCcceeechHHHHHHHHHHHHHcCCCHHHHHHHHHhCChhheecHHHHHHHHHHHHHHhCCC
Confidence            4689999999999999999999999999987    689999999999999999999 458873

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*

Probab=96.77  E-value=0.0025  Score=49.93  Aligned_cols=56  Identities=13%  Similarity=0.286  Sum_probs=47.1

Q ss_pred             HhhhhcChhhHHHHHHHHHH---hhCCChhhH----hhhhhhhhccHHHHHHHHHHHHHhCCc
Q psy14468         11 AIFLSLDATELVKTFNYVHS---DMKVPHERI----LEFPNILTSRRFRIENRHSYLKSLGRD   66 (108)
Q Consensus        11 ~~ll~~~~~~L~~kf~Y~~~---~M~i~~~~I----~k~P~~l~~s~~~Ir~RH~FL~~LGr~   66 (108)
                      |.+|....+.+.+++.|+.+   .+|++.++|    .++|++|.+|.+.|+.+-+||..+|.-
T Consensus       226 ~~~l~~s~~~l~~~~~~l~e~~~~lG~s~~ev~~~v~~~P~il~~s~~~l~~k~~fl~~mg~~  288 (343)
T 3mva_O          226 AEILDLSNDYARRSYANIKEKLFSLGCTEEEVQKFVLSYPDVIFLAEKKFNDKIDCLMEENIS  288 (343)
T ss_dssp             GGGGGCCTTHHHHHHHHHHHHHHTTTCCHHHHHHHHHTCGGGGGSCHHHHHHHHHHHHTTTCC
T ss_pred             hHHhhccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCchhcccHHHHHHHHHHHHHcCCC
Confidence            45666666777788888777   689998876    899999999999999999999988873

>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}

Probab=96.20  E-value=0.0077  Score=48.11  Aligned_cols=50  Identities=20%  Similarity=0.347  Sum_probs=24.5

Q ss_pred             hHhhhhcChhhHHHHHHHHHHhhCCChhh----HhhhhhhhhccHHHHHHHHHHH
Q psy14468         10 QAIFLSLDATELVKTFNYVHSDMKVPHER----ILEFPNILTSRRFRIENRHSYL   60 (108)
Q Consensus        10 ~~~ll~~~~~~L~~kf~Y~~~~M~i~~~~----I~k~P~~l~~s~~~Ir~RH~FL   60 (108)
                      .|.||..+.++|.++..|+.. +|++.++    |.++|++|.++..+|+.+-.||
T Consensus       102 ~P~lL~~s~e~L~~~l~fL~~-lGl~~~~i~~ll~~~P~lL~~s~e~i~~~v~~L  155 (335)
T 4fp9_B          102 SPQLLKLPIMQMRKRSSYLQK-LGLGEGKLKRVLYCCPEIFTMRQQDINDTVRLL  155 (335)
T ss_dssp             CGGGGGSCHHHHHHHHHHHHH-TTCTTTTHHHHHHHCGGGGTSCHHHHHHHHHHH
T ss_pred             ChhhccCCHHHHHHHHHHHHH-cCCCHHHHHHHHHhCchhhccChHHHHHHHHHH
Confidence            344555555555555555533 5554332    4445555555555555555544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00