Psyllid ID: psy14494

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470
MEVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNILNRN
ccEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHHHHHcccEEEEEcccEEEcccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcHHHccccccccccccccHHHccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHccccccccccccccHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHccc
ccEEEEEEEcHHHccccccccccHHHHHHHHHHHHHHHHHHHHHccccEEEEEccHHHHHHHHHHHHcccEEEEEccccHHHHHHHHHHHHHHHHcccEEEEEcccEcccHHHHEcccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccHHccccHHHcHHHcccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHcccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHcccccccccccHHHccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccEcHHHHHHHHHHHcccccHHHHHHHHHHHcccccccccccccccHHHHHHHHccccHHHHHHcHHHccccccccccHHHccHHHHHHccccEcccEccccccHHHHHHHHHHHHHHHHHHHccc
MEVYCVFIfdknildplrsqgiiedRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVminhdyepqaiIRDKLIKKELKVIGckffsykdQVIFEKNEilnktgkpysIFSFYQKKWIEKVKsnkcylqsypvksylnnlvhsskLHKIINNNIISLNDLGFCKsnlsslgiktgaSGAKILLNNFIKKIKNyninrnypsingtsyLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCypnvvnksfkkEYDNILWESDNYAKKNFLnwckgytgypliDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENyfanklndfdlasnngnwqwsassgcssqpffrifnpiiqskkfdyqgIFIRKylpqlsklsnkyihspwkassYKLEKAGIilgknypkpilehslsKKNILKRYNFIKNILNRN
MEVYCVFIfdknildplrsqGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNeilnktgkpySIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILehslskknilkrynfiknilnrn
MEVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKiinnniiSLNDLGFCKSNLSSLGIKTGASGAkillnnfikkiknyninrnyPSINGTSYLSIHLRFGTISIRklvklifkfikkHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNILNRN
**VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNIL***
MEVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKF************FTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYN**KN*****
MEVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNILNRN
MEVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLN*******LHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNILN**
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MEVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNILNRN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query470 2.2.26 [Sep-21-2011]
Q55081488 Deoxyribodipyrimidine pho N/A N/A 0.936 0.901 0.339 8e-77
Q04449479 Deoxyribodipyrimidine pho yes N/A 0.906 0.889 0.323 5e-72
Q9HQ46481 Deoxyribodipyrimidine pho yes N/A 0.929 0.908 0.309 5e-70
P00914472 Deoxyribodipyrimidine pho N/A N/A 0.887 0.883 0.328 4e-68
Q9KNA8469 Deoxyribodipyrimidine pho yes N/A 0.874 0.876 0.317 2e-67
P25078473 Deoxyribodipyrimidine pho yes N/A 0.810 0.805 0.323 8e-65
P05327484 Deoxyribodipyrimidine pho yes N/A 0.944 0.917 0.307 2e-64
P57386483 Deoxyribodipyrimidine pho yes N/A 0.895 0.871 0.344 6e-59
P27526642 Deoxyribodipyrimidine pho N/A N/A 0.948 0.694 0.310 7e-58
Q89AJ9478 Deoxyribodipyrimidine pho yes N/A 0.831 0.817 0.377 6e-55
>sp|Q55081|PHR_SYNY3 Deoxyribodipyrimidine photo-lyase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=phrA PE=1 SV=1 Back     alignment and function desciption
 Score =  288 bits (736), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 158/466 (33%), Positives = 244/466 (52%), Gaps = 26/466 (5%)

Query: 3   VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
           +  VF  D  IL        +   R+ ++   +  L  + Q   S+L++  A   + + K
Sbjct: 45  IVGVFCLDNKIL----QAEDMAPARVAYLLGCLQSLQDHYQRLGSELLVFQADPVQLLPK 100

Query: 63  LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
           L   L    V    D EP A  RD  + + L+  G    +  DQ++    E+L + G PY
Sbjct: 101 LANTLGAHGVTWTLDTEPYAQKRDLAVAQALRERGLAIATEWDQLMHHPGEVLTQAGSPY 160

Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSK--LHKIINNNIISLNDLGFCKS 180
           ++++ + K W +  K++       P    L  L  + K  L  +    I  L DLGF   
Sbjct: 161 TVYTPFWKNWSQLPKTSPV-----PTPKDLQGLTPAEKEKLAPLEPLAIPQLADLGFIWD 215

Query: 181 NLSSLGIKTGASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVK 239
               L +  G   A+  L+ F+   ++ Y  NRN+P+++GTS LS  L+FG IS R L +
Sbjct: 216 Q--PLPLTPGEEAAEQRLDWFVAHGLEEYQQNRNFPALDGTSQLSAALKFGVISPRTLWQ 273

Query: 240 LIFKFIKKHYKTDCIGYF-TWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNY 298
              +  ++    +      TW  +L WR+FYQ  LY +P +    ++  +    WE +  
Sbjct: 274 TTLEAWEQSRSEEARASIETWQQELAWREFYQHCLYSFPALAQGPYRSPFQEFPWEEN-- 331

Query: 299 AKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFAN 358
            + +F  WC+G TGYP+ID+A+ QLN +G+MHNR RM+ ASFLIK++ +NW+WGE YF  
Sbjct: 332 -QDHFQAWCEGRTGYPIIDAAMAQLNQTGWMHNRCRMIVASFLIKDLILNWQWGELYFMQ 390

Query: 359 KLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNK 418
            L D DLA+NNG WQWSASSG   +P  RIFNP  Q++KFD +G +IR +LPQL++    
Sbjct: 391 TLYDGDLAANNGGWQWSASSGMDPKP-LRIFNPHTQAQKFDPEGEYIRTWLPQLARFDTG 449

Query: 419 YIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIK 464
            +       + KL   G     NYP+PI++H+  ++   +RY  +K
Sbjct: 450 DL------LTGKL-TPGSRRSVNYPEPIVDHNQQQREFKRRYQLVK 488
Involved in repair of UV radiation-induced DNA damage. Exhibits specific, light-dependent repair activity for a cyclobutyl pyrimidine dimer by catalyzing the light-dependent monomerization (300-600 nm) of the dimers (in cis-syn configuration), which are formed between adjacent bases on the same DNA strand upon exposure to ultraviolet radiation. It has been shown that photorepair is more important than excision repair for UV-induced DNA lesions in Synechocystis. Its disruption does not affect circadian rhythm.
Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)
EC: 4EC: .EC: 1EC: .EC: 9EC: 9EC: .EC: 3
>sp|Q04449|PHR_BACPE Deoxyribodipyrimidine photo-lyase OS=Bacillus pseudofirmus (strain OF4) GN=phr PE=3 SV=2 Back     alignment and function description
>sp|Q9HQ46|PHR_HALSA Deoxyribodipyrimidine photo-lyase OS=Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) GN=phr PE=3 SV=2 Back     alignment and function description
>sp|P00914|PHR_ECOLI Deoxyribodipyrimidine photo-lyase OS=Escherichia coli (strain K12) GN=phrB PE=1 SV=1 Back     alignment and function description
>sp|Q9KNA8|PHR_VIBCH Deoxyribodipyrimidine photo-lyase OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=phrA PE=1 SV=1 Back     alignment and function description
>sp|P25078|PHR_SALTY Deoxyribodipyrimidine photo-lyase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=phrB PE=1 SV=2 Back     alignment and function description
>sp|P05327|PHR_SYNP6 Deoxyribodipyrimidine photo-lyase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=phr PE=1 SV=4 Back     alignment and function description
>sp|P57386|PHR_BUCAI Deoxyribodipyrimidine photo-lyase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) GN=phrB PE=3 SV=1 Back     alignment and function description
>sp|P27526|PHR_NEUCR Deoxyribodipyrimidine photo-lyase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=phr-1 PE=3 SV=1 Back     alignment and function description
>sp|Q89AJ9|PHR_BUCBP Deoxyribodipyrimidine photo-lyase OS=Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp) GN=phrB PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query470
399020171498 deoxyribodipyrimidine photolyase [Herbas 0.987 0.931 0.501 1e-146
134095905493 deoxyribodipyrimidine photolyase [Hermin 0.963 0.918 0.503 1e-144
398837372497 deoxyribodipyrimidine photolyase [Herbas 0.974 0.921 0.486 1e-143
340785990510 deoxyribodipyrimidine photolyase [Collim 0.976 0.9 0.504 1e-143
152981216495 deoxyribodipyrimidine photo-lyase [Janth 0.968 0.919 0.492 1e-142
300311186494 deoxyribodipyrimidine photolyase [Herbas 0.974 0.927 0.486 1e-142
409405685497 deoxyribodipyrimidine photolyase [Herbas 0.972 0.919 0.476 1e-139
395005572487 deoxyribodipyrimidine photolyase [Acidov 0.957 0.924 0.474 1e-138
337281072497 deoxyribodipyrimidine photolyase (photor 0.957 0.905 0.466 1e-137
386334355548 deoxyribodipyrimidine photolyase [Ralsto 0.965 0.828 0.467 1e-137
>gi|399020171|ref|ZP_10722310.1| deoxyribodipyrimidine photolyase [Herbaspirillum sp. CF444] gi|398095823|gb|EJL86155.1| deoxyribodipyrimidine photolyase [Herbaspirillum sp. CF444] Back     alignment and taxonomy information
 Score =  523 bits (1348), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 236/471 (50%), Positives = 329/471 (69%), Gaps = 7/471 (1%)

Query: 2   EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
           +VYCVF++D++ILD L + G+  DRRIEFI   I EL   L+     LI+R+A A ++I 
Sbjct: 32  QVYCVFVYDRDILDALLTDGLQADRRIEFILACIAELDAALRAAGGALIVRHAPAQQDIP 91

Query: 62  KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
            L  +L  DAV  NHDYEPQAI RD  +KK+L+  G +  +YKDQVIFEK+E+L+   +P
Sbjct: 92  ALAAELGADAVFANHDYEPQAIKRDAAVKKQLEQDGRQLLTYKDQVIFEKDEVLSLASRP 151

Query: 122 YSIFSFYQKKWIEKV--KSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCK 179
           +S+F+ Y+  W+ K+       YL+ YPV +Y   L   SK H   +  + +L+DLGF  
Sbjct: 152 FSVFTPYKNAWMNKLSGPGGDFYLKPYPVDAYFAQLAPPSKQH---HKALPTLDDLGFLP 208

Query: 180 SNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVK 239
           +NL  L I TG SGA  LL +F+ ++  Y   R++P++ G SYLS+HLRFGTI+IR LV+
Sbjct: 209 TNLKDLRIPTGMSGAAQLLEDFLPRLGKYGDTRDFPAVKGPSYLSVHLRFGTIAIRTLVR 268

Query: 240 LIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYA 299
                ++        G   WLS+L+WRDFY MIL+ +P VV +SFK +YD I WE    A
Sbjct: 269 AAVDAMR--IGAGRRGAPVWLSELVWRDFYFMILFHHPRVVERSFKSDYDAIQWEGGKRA 326

Query: 300 KKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANK 359
           +++F  WC+G TGYPL+D+A++QLN +GYMHNRLRMVTASFL K++GI+W+WGE YFA++
Sbjct: 327 RESFAAWCEGRTGYPLVDAAMLQLNQTGYMHNRLRMVTASFLTKDLGIDWRWGEKYFADQ 386

Query: 360 LNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKY 419
           LNDFDL++NNG WQW++SSGC +QP+FRIFNPI QS++FD +G FIR+YLPQL+ L +KY
Sbjct: 387 LNDFDLSANNGGWQWASSSGCDAQPYFRIFNPITQSERFDAEGKFIRRYLPQLAGLPDKY 446

Query: 420 IHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNILNRN 470
           IH+PW   +  L+ AG+ LGK+YP P+++H+ ++K  L RY  +K  L   
Sbjct: 447 IHAPWLCPADLLKAAGVTLGKDYPLPLVDHAEARKRTLLRYAVVKKDLGEE 497

Source: Herbaspirillum sp. CF444

Species: Herbaspirillum sp. CF444

Genus: Herbaspirillum

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria
>gi|134095905|ref|YP_001100980.1| deoxyribodipyrimidine photolyase [Herminiimonas arsenicoxydans] gi|133739808|emb|CAL62859.1| Deoxyribodipyrimidine photolyase [Herminiimonas arsenicoxydans] Back     alignment and taxonomy information
>gi|398837372|ref|ZP_10594673.1| deoxyribodipyrimidine photolyase [Herbaspirillum sp. YR522] gi|398208714|gb|EJM95423.1| deoxyribodipyrimidine photolyase [Herbaspirillum sp. YR522] Back     alignment and taxonomy information
>gi|340785990|ref|YP_004751455.1| deoxyribodipyrimidine photolyase [Collimonas fungivorans Ter331] gi|340551257|gb|AEK60632.1| Deoxyribodipyrimidine photolyase [Collimonas fungivorans Ter331] Back     alignment and taxonomy information
>gi|152981216|ref|YP_001354641.1| deoxyribodipyrimidine photo-lyase [Janthinobacterium sp. Marseille] gi|151281293|gb|ABR89703.1| deoxyribodipyrimidine photo-lyase [Janthinobacterium sp. Marseille] Back     alignment and taxonomy information
>gi|300311186|ref|YP_003775278.1| deoxyribodipyrimidine photolyase [Herbaspirillum seropedicae SmR1] gi|300073971|gb|ADJ63370.1| deoxyribodipyrimidine photolyase (photoreactivation) protein [Herbaspirillum seropedicae SmR1] Back     alignment and taxonomy information
>gi|409405685|ref|ZP_11254147.1| deoxyribodipyrimidine photolyase [Herbaspirillum sp. GW103] gi|386434234|gb|EIJ47059.1| deoxyribodipyrimidine photolyase [Herbaspirillum sp. GW103] Back     alignment and taxonomy information
>gi|395005572|ref|ZP_10389447.1| deoxyribodipyrimidine photolyase [Acidovorax sp. CF316] gi|394316499|gb|EJE53223.1| deoxyribodipyrimidine photolyase [Acidovorax sp. CF316] Back     alignment and taxonomy information
>gi|337281072|ref|YP_004620544.1| deoxyribodipyrimidine photolyase (photoreactivating enzyme) [Ramlibacter tataouinensis TTB310] gi|334732149|gb|AEG94525.1| Candidate deoxyribodipyrimidine photolyase (photoreactivating enzyme) [Ramlibacter tataouinensis TTB310] Back     alignment and taxonomy information
>gi|386334355|ref|YP_006030526.1| deoxyribodipyrimidine photolyase [Ralstonia solanacearum Po82] gi|334196805|gb|AEG69990.1| deoxyribodipyrimidine photolyase [Ralstonia solanacearum Po82] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query470
TIGR_CMR|CPS_1380470 CPS_1380 "deoxyribodipyrimidin 0.438 0.438 0.485 2.9e-60
UNIPROTKB|Q9KNA8469 phrA "Deoxyribodipyrimidine ph 0.504 0.505 0.422 4.8e-60
TIGR_CMR|VC_A0057469 VC_A0057 "deoxyribodipyrimidin 0.504 0.505 0.422 4.8e-60
UNIPROTKB|Q48MU1482 phrB "Deoxyribodipyrimidine ph 0.880 0.858 0.339 8.1e-60
UNIPROTKB|P00914472 phr "deoxyribodipyrimidine pho 0.5 0.497 0.433 2.6e-59
TIGR_CMR|SO_3384512 SO_3384 "deoxyribodipyrimidine 0.525 0.482 0.432 1.4e-58
TIGR_CMR|CBU_1176472 CBU_1176 "deoxyribodipyrimidin 0.512 0.510 0.421 9.9e-58
TIGR_CMR|BA_3180476 BA_3180 "deoxyribodipyrimidine 0.889 0.878 0.325 1.6e-54
ASPGD|ASPL0000053661567 cryA [Emericella nidulans (tax 0.495 0.410 0.396 2.3e-54
SGD|S000005913565 PHR1 "DNA photolyase involved 0.423 0.352 0.357 5.3e-43
TIGR_CMR|CPS_1380 CPS_1380 "deoxyribodipyrimidine photolyase" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
 Score = 533 (192.7 bits), Expect = 2.9e-60, Sum P(2) = 2.9e-60
 Identities = 102/210 (48%), Positives = 142/210 (67%)

Query:   215 PSINGTSYLSIHLRFGTISIRXXXXXXXXXXXXHYKTDCIGYFTWLSQLIWRDFYQMILY 274
             PSI GTS +S +L  G IS R                     F+WL+++IWR+FY+ +L+
Sbjct:   232 PSIKGTSGISPYLAAGVISPRFVLRLLLNKHPDLLVASDSEEFSWLNEIIWREFYRHLLF 291

Query:   275 CYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRL 333
                 +  ++ +K+ Y  +LW +D      F  WC+G TGYPL+D+A+ QLN +G+MHNRL
Sbjct:   292 HEQRLCKHQCYKENYQEMLWHNDAAL---FDAWCQGRTGYPLVDAAMRQLNQTGWMHNRL 348

Query:   334 RMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPII 393
             RMV ASFL K++ I+W+ GE YF   L D DLASNNG WQW+AS+GC +QP+FRIFNPI 
Sbjct:   349 RMVVASFLTKHLLIDWRLGEKYFMQHLIDGDLASNNGGWQWAASTGCDAQPYFRIFNPIR 408

Query:   394 QSKKFDYQGIFIRKYLPQLSKLSNKYIHSP 423
             QS++FD +G+FIRKY+P+L+ +S+K IH P
Sbjct:   409 QSERFDPKGVFIRKYIPELNNISDKAIHFP 438
GO:0003904 "deoxyribodipyrimidine photo-lyase activity" evidence=ISS
GO:0006281 "DNA repair" evidence=ISS
UNIPROTKB|Q9KNA8 phrA "Deoxyribodipyrimidine photo-lyase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_A0057 VC_A0057 "deoxyribodipyrimidine photolyase, cyclobutane pyrimidine dimer-specific" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
UNIPROTKB|Q48MU1 phrB "Deoxyribodipyrimidine photolyase" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)] Back     alignment and assigned GO terms
UNIPROTKB|P00914 phr "deoxyribodipyrimidine photolyase (photoreactivation)" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TIGR_CMR|SO_3384 SO_3384 "deoxyribodipyrimidine photolyase" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_1176 CBU_1176 "deoxyribodipyrimidine photolyase - class I" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
TIGR_CMR|BA_3180 BA_3180 "deoxyribodipyrimidine photolyase family protein" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
ASPGD|ASPL0000053661 cryA [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
SGD|S000005913 PHR1 "DNA photolyase involved in photoreactivation" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q04449PHR_BACPE4, ., 1, ., 9, 9, ., 30.32350.90630.8893yesN/A
P57386PHR_BUCAI4, ., 1, ., 9, 9, ., 30.34420.89570.8716yesN/A
Q89AJ9PHR_BUCBP4, ., 1, ., 9, 9, ., 30.37750.83190.8179yesN/A
P05327PHR_SYNP64, ., 1, ., 9, 9, ., 30.30760.94460.9173yesN/A
P25078PHR_SALTY4, ., 1, ., 9, 9, ., 30.32360.81060.8054yesN/A
Q9KNA8PHR_VIBCH4, ., 1, ., 9, 9, ., 30.31770.87440.8763yesN/A
Q9HQ46PHR_HALSA4, ., 1, ., 9, 9, ., 30.30910.92970.9085yesN/A
P12768PHR_STRGR4, ., 1, ., 9, 9, ., 30.28310.86590.8945yesN/A
Q7UJB1CRYD_RHOBANo assigned EC number0.28240.86170.8299yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.1.990.766

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query470
COG0415461 COG0415, PhrB, Deoxyribodipyrimidine photolyase [D 1e-131
pfam03441276 pfam03441, FAD_binding_7, FAD binding domain of DN 1e-114
TIGR03556471 TIGR03556, photolyase_8HDF, deoxyribodipyrimidine 4e-99
PRK10674472 PRK10674, PRK10674, deoxyribodipyrimidine photolya 3e-83
TIGR02766475 TIGR02766, crypt_chrom_pln, cryptochrome, plant fa 1e-59
TIGR02765429 TIGR02765, crypto_DASH, cryptochrome, DASH family 5e-37
pfam00875164 pfam00875, DNA_photolyase, DNA photolyase 8e-32
>gnl|CDD|223492 COG0415, PhrB, Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair] Back     alignment and domain information 
 Score =  386 bits (994), Expect = e-131
 Identities = 157/464 (33%), Positives = 247/464 (53%), Gaps = 35/464 (7%)

Query: 3   VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
           +  VFI D   L      G    R   F+ +S+  L  +L      L++R     + + +
Sbjct: 31  IIAVFILDPEQL------GHASPRHAAFLLQSLQALQQSLAELGIPLLVREGDPEQVLPE 84

Query: 63  LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
           L  +L    V  N DYE     RD  + + L  +G    S+ D ++ E  E+   +G+PY
Sbjct: 85  LAKQLAATTVFWNRDYEEWERQRDAALAQPLTEVGIAVHSFWDALLHEPGEVRTGSGEPY 144

Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
            +F+ + K W ++++  +       + +  +         +      ISL D     S  
Sbjct: 145 KVFTPFYKAWRDRLRILRPVPAPDVLDALRD---------EEPPPEEISLPDF----SKF 191

Query: 183 SSLGIKTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLI 241
             L    G   A   L +F+   + +Y   R++P+++GTS LS +L FG IS R+    +
Sbjct: 192 DVLLFTGGEKAALARLQDFLAEGLDDYERTRDFPALDGTSRLSPYLAFGVISPRE----V 247

Query: 242 FKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAK 300
           +  +         G    +++LIWR+FYQ +LY YP++   + F ++  NI WE +    
Sbjct: 248 YAALLAAESDAREGTAALINELIWREFYQHLLYHYPSLSRFEPFAEKTLNIPWEDNPAH- 306

Query: 301 KNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKL 360
             F  W +G TGYP++D+A+ QLN +GYMHNR+RM+ ASFL K++ I+W+ GE YF  +L
Sbjct: 307 --FQAWQEGKTGYPIVDAAMRQLNQTGYMHNRMRMIVASFLTKDLLIDWREGEKYFMRQL 364

Query: 361 NDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYI 420
            D D ASNNG WQW+AS+G  + P+FRIFNP+ Q++KFD  G FIR+++P+L  L +KYI
Sbjct: 365 IDGDPASNNGGWQWAASTGTDAAPYFRIFNPVTQAEKFDPDGEFIRRWVPELRNLPDKYI 424

Query: 421 HSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIK 464
           H PW+ S        ++LG +YPKPI++H  S++  L  Y   K
Sbjct: 425 HEPWELSE-------VVLGVDYPKPIVDHKESREQALAAYEAAK 461

Length = 461
>gnl|CDD|217559 pfam03441, FAD_binding_7, FAD binding domain of DNA photolyase Back     alignment and domain information
>gnl|CDD|132595 TIGR03556, photolyase_8HDF, deoxyribodipyrimidine photo-lyase, 8-HDF type Back     alignment and domain information
>gnl|CDD|236734 PRK10674, PRK10674, deoxyribodipyrimidine photolyase; Provisional Back     alignment and domain information
>gnl|CDD|131813 TIGR02766, crypt_chrom_pln, cryptochrome, plant family Back     alignment and domain information
>gnl|CDD|234002 TIGR02765, crypto_DASH, cryptochrome, DASH family Back     alignment and domain information
>gnl|CDD|216167 pfam00875, DNA_photolyase, DNA photolyase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 470
COG0415461 PhrB Deoxyribodipyrimidine photolyase [DNA replica 100.0
TIGR02766475 crypt_chrom_pln cryptochrome, plant family. At lea 100.0
PRK10674472 deoxyribodipyrimidine photolyase; Provisional 100.0
TIGR03556471 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 100.0
TIGR02765429 crypto_DASH cryptochrome, DASH family. Photolyases 100.0
PF03441277 FAD_binding_7: FAD binding domain of DNA photolyas 100.0
TIGR00591454 phr2 photolyase PhrII. All proteins in this family 100.0
KOG0133|consensus531 100.0
COG3046505 Uncharacterized protein related to deoxyribodipyri 100.0
PF00875165 DNA_photolyase: DNA photolyase from Prosite.; Inte 99.93
PF04244224 DPRP: Deoxyribodipyrimidine photo-lyase-related pr 98.12
KOG0133|consensus531 92.66
>COG0415 PhrB Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair] Back     alignment and domain information 
Probab=100.00  E-value=9.2e-120  Score=907.39  Aligned_cols=427  Identities=36%  Similarity=0.699  Sum_probs=383.3

Q ss_pred             EEEEEEecCCCCCccccCCCCcHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcChHHHHHHHHHhcCcCEEEEeccCChHH
Q psy14494          3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQA   82 (470)
Q Consensus         3 vl~vfi~dp~~~~~~~~~~~~~~~r~~Fl~esL~~L~~~L~~~G~~L~v~~g~~~~~l~~L~~~~~~~~V~~~~~~~~~~   82 (470)
                      +|+|||+||+++.  ..    |++|.+||.+||++|+++|+++||+|+|..|++..+|+++++++++++|++|.+|++.+
T Consensus        31 ~~~vfi~~~~~~~--~~----~~~~~~Fl~~sL~~L~~~L~~~gi~L~v~~~~~~~~l~~~~~~~~~~~v~~n~~~~~~~  104 (461)
T COG0415          31 IIAVFILDPEQLG--HA----SPRHAAFLLQSLQALQQSLAELGIPLLVREGDPEQVLPELAKQLAATTVFWNRDYEEWE  104 (461)
T ss_pred             eEEEEEechhhcc--cc----CHHHHHHHHHHHHHHHHHHHHcCCceEEEeCCHHHHHHHHHHHhCcceEEeeeeechhH
Confidence            4789999999987  45    99999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCcEEEEEeCceeEcCCcccccCCCCCccchHHHHHHHHHhhcccccCCCCCccccccccccc--ch
Q psy14494         83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHS--SK  160 (470)
Q Consensus        83 ~~rd~~v~~~l~~~~v~~~~~~~~~L~~p~~i~~~~g~~~~vft~F~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  160 (470)
                      ..||.+|++.|.+.||.++.|+|++|++|+++.+..|++|+|||+|+|+|...+...    .|.+.|.....+...  +.
T Consensus       105 ~~rD~al~~~l~~~gi~~~~~~d~~l~~p~~~~t~~~~~y~vfT~F~k~~~~~~~~~----~~~~~p~~~~~~~~~~~~~  180 (461)
T COG0415         105 RQRDAALAQPLTEVGIAVHSFWDALLHEPGEVRTGSGEPYKVFTPFYKAWRDRLRIL----RPVPAPDVLDALRDEEPPP  180 (461)
T ss_pred             HHHHHHHHHHHHhcCceEEEeccccccCHhhccCCCCCCccccchHHHHHHHhcccC----CCCCCcchhccccccccCc
Confidence            999999999999999999999999999999999999999999999999998874422    233344221111100  00


Q ss_pred             hhhhccCcCCCcccCCCCcCCCCCCCCCccHHHHHHHHHHHHH-HhhcccccCCCCCCCCCCcccHhhhcCCccHHHHHH
Q psy14494        161 LHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVK  239 (470)
Q Consensus       161 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~gGe~~A~~~L~~Fl~-~l~~Y~~~r~~p~~~~tS~LSpyL~~G~iS~R~v~~  239 (470)
                      .    ....|.     +.  ......++|||++|+++|++|++ ++.+|+..||+|+.++||+|||||+||+||||+|++
T Consensus       181 ~----~~~~P~-----~~--~~~~~~~~~Ge~aA~~~l~~F~~~~l~~Y~~~Rd~p~~~~TS~LSpyL~~G~IS~r~v~~  249 (461)
T COG0415         181 E----EISLPD-----FS--KFDVLLFTGGEKAALARLQDFLAEGLDDYERTRDFPALDGTSRLSPYLAFGVISPREVYA  249 (461)
T ss_pred             c----cccCCc-----cc--cccccCCCchHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCHHHHcCCcCHHHHHH
Confidence            0    011111     00  11123589999999999999999 999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhcccCCcchHHHHHHHHHHHHHHHHHHhCCcc-cccccchhhccCCCCCchhhhHHHhhhhcCCCCchHHHH
Q psy14494        240 LIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNV-VNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDS  318 (470)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~f~~eL~WRef~~~~~~~~p~~-~~~~~~~~~~~~~w~~d~~~~~~~~~w~~G~TG~p~vDA  318 (470)
                      ++++...    ...++...|++||+|||||++++.++|++ ...++...+..++|.+++   +.|++|++|+||||||||
T Consensus       250 ~~~~~~~----~~~~~~~~~~~eL~WREFy~h~~~~~p~~~~~~~~~~~~~~~~w~~~~---~~f~aW~~G~TGyPIVDA  322 (461)
T COG0415         250 ALLAAES----DAREGTAALINELIWREFYQHLLYHYPSLSRFEPFAEKTLNIPWEDNP---AHFQAWQEGKTGYPIVDA  322 (461)
T ss_pred             HHHHhhh----cccchHHHHHHHHHHHHHHHHHHHhCCcccccccccccccCCccccCH---HHHHHHhcCCCCCccccH
Confidence            9988632    23567788999999999999999999999 667999999999999999   999999999999999999


Q ss_pred             HHHHHHHhcCCchHHHHHHHHHHHHhcCCCChHHHHHHHHhccccCCCCCcchhhhhhccCCCCCCcccccChhhhhhhc
Q psy14494        319 AIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKF  398 (470)
Q Consensus       319 ~mrqL~~tG~mhnr~Rm~~asfl~k~L~idW~~g~~~F~~~LiD~d~a~n~~~wqw~ag~G~d~~p~~R~~np~~q~~k~  398 (470)
                      |||||++||||||||||||||||||+|+||||+||+||+++|||||+|||+|||||+||+|+|++||||||||++|++||
T Consensus       323 ~MRqL~~TG~MHNR~RMivAsFL~k~L~IdWR~GE~~F~~~LiD~D~asN~ggWQW~AstG~Da~pyfRiFNp~~Q~~kf  402 (461)
T COG0415         323 AMRQLNQTGYMHNRMRMIVASFLTKDLLIDWREGEKYFMRQLIDGDPASNNGGWQWAASTGTDAAPYFRIFNPVTQAEKF  402 (461)
T ss_pred             HHHHHHHhCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHhccCCCcccCCCCeeEEeccCCCCCcceeccCHHHHHhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcchhHHhhccccccCCCccccCccccChHHHHHcCCccCCCCCCCCCChHHHHHHHHHHHHHHH
Q psy14494        399 DYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIK  464 (470)
Q Consensus       399 Dp~g~yIr~w~PeL~~~p~~~ih~pw~~~~~~~~~~~~~~~~~YP~pivd~~~~~~~~~~~~~~~~  464 (470)
                      ||+|+|||+|||||++||+++||+||+++.       +.+|.+||+|||||+++|++++++|+..+
T Consensus       403 Dp~g~fIr~wvPeL~~~~~~~ih~p~~~~~-------~~~~~~YP~piVd~~~~r~~a~~~y~~~~  461 (461)
T COG0415         403 DPDGEFIRRWVPELRNLPDKYIHEPWELSE-------VVLGVDYPKPIVDHKESREQALAAYEAAK  461 (461)
T ss_pred             CCCcccHHhhCHHhhCCChhhccChhhccc-------ccccCCCCccccccHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999986       56789999999999999999999999753

>TIGR02766 crypt_chrom_pln cryptochrome, plant family Back     alignment and domain information
>PRK10674 deoxyribodipyrimidine photolyase; Provisional Back     alignment and domain information
>TIGR03556 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 8-HDF type Back     alignment and domain information
>TIGR02765 crypto_DASH cryptochrome, DASH family Back     alignment and domain information
>PF03441 FAD_binding_7: FAD binding domain of DNA photolyase from Prosite Back     alignment and domain information
>TIGR00591 phr2 photolyase PhrII Back     alignment and domain information
>KOG0133|consensus Back     alignment and domain information
>COG3046 Uncharacterized protein related to deoxyribodipyrimidine photolyase [General function prediction only] Back     alignment and domain information
>PF00875 DNA_photolyase: DNA photolyase from Prosite Back     alignment and domain information
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases Back     alignment and domain information
>KOG0133|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query470
1dnp_A471 Structure Of Deoxyribodipyrimidine Photolyase Lengt 1e-62
1tez_A474 Complex Between Dna And The Dna Photolyase From Ana 1e-58
1owl_A484 Structure Of Apophotolyase From Anacystis Nidulans 2e-58
2e0i_A440 Crystal Structure Of Archaeal Photolyase From Sulfo 2e-50
1u3c_A509 Crystal Structure Of The Phr Domain Of Cryptochrome 2e-37
3cvx_A543 Drosophila Melanogaster (6-4) Photolyase H369m Muta 3e-36
3fy4_A537 (6-4) Photolyase Crystal Structure Length = 537 5e-36
3cvw_A543 Drosophila Melanogaster (6-4) Photolyase H365n Muta 6e-36
3cvu_A543 Drosophila Melanogaster (6-4) Photolyase Bound To D 2e-35
1np7_A489 Crystal Structure Analysis Of Synechocystis Sp. Pcc 3e-35
1iqr_A420 Crystal Structure Of Dna Photolyase From Thermus Th 1e-30
4gu5_A539 Structure Of Full-Length Drosophila Cryptochrome Le 2e-27
2vtb_B525 Structure Of Cryptochrome 3 - Dna Complex Length = 5e-21
2j4d_A525 Cryptochrome 3 From Arabidopsis Thaliana Length = 5 7e-21
2ijg_X526 Crystal Structure Of Cryptochrome 3 From Arabidopsi 7e-21
>pdb|1DNP|A Chain A, Structure Of Deoxyribodipyrimidine Photolyase Length = 471 Back     alignment and structure 
Iteration: 1

 Score =  237 bits (605), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 138/448 (30%), Positives = 226/448 (50%), Gaps = 31/448 (6%)
Query: 23  IEDRRIEFIFKSIIELSINLQNYDSDLIIRYA---IASKEIKKLVIKLN-IDAVMINHDY 78
           +  R+ E I   +  L I L      L+ R     +AS EI K V   N +  +  N+ Y
Sbjct: 46  MSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQY 105
Query: 79  EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
           E     RD  +++ L+ + C+ F   D VI     ++    + Y +F+ ++  W+++++ 
Sbjct: 106 EVNERARDVEVERALRNVVCEGFD--DSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 163
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKXXXXXXXSLNDLGFCKSNLSSLGIKTGASGAXXXX 198
                        +   V + K+             L + + +  +         A    
Sbjct: 164 G------------MPECVAAPKVRSSGSIEPSPSITLNYPRQSFDTAHFPVEEKAAIAQL 211
Query: 199 XXXXXXXXXXXXXXXX-PSINGTSYLSIHLRFGTISIRXXXXXXXXXXXXHYKTDCIGYF 257
                            P++ GTS LS  L  G +S R                D     
Sbjct: 212 RQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQ--ALDGGAGS 269
Query: 258 TWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
            WL++LIWR+FY+ ++  +P++  ++ F    D + W+S+     +   W +G TGYP++
Sbjct: 270 VWLNELIWREFYRHLITYHPSLCKHRPFIAWTDRVQWQSN---PAHLQAWQEGKTGYPIV 326
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
           D+A+ QLNS+G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 327 DAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 386
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
           S+G  + P+FRIFNP  Q +KFD++G FIR++LP+L  +  K +H PWK +    +KAG+
Sbjct: 387 STGTDAAPYFRIFNPTTQGEKFDHEGEFIRQWLPELRDVPGKVVHEPWKWA----QKAGV 442
Query: 437 ILGKNYPKPILEHSLSKKNILKRYNFIK 464
            L  +YP+PI+EH  ++   L  Y   +
Sbjct: 443 TL--DYPQPIVEHKEARVQTLAAYEAAR 468
>pdb|1TEZ|A Chain A, Complex Between Dna And The Dna Photolyase From Anacystis Nidulans Length = 474 Back     alignment and structure
>pdb|1OWL|A Chain A, Structure Of Apophotolyase From Anacystis Nidulans Length = 484 Back     alignment and structure
>pdb|2E0I|A Chain A, Crystal Structure Of Archaeal Photolyase From Sulfolobus Tokodaii With Two Fad Molecules: Implication Of A Novel Light-Harvesting Cofactor Length = 440 Back     alignment and structure
>pdb|1U3C|A Chain A, Crystal Structure Of The Phr Domain Of Cryptochrome 1 From Arabidopsis Thaliana Length = 509 Back     alignment and structure
>pdb|3CVX|A Chain A, Drosophila Melanogaster (6-4) Photolyase H369m Mutant Bound To Ds Dna With A T-T (6-4) Photolesion Length = 543 Back     alignment and structure
>pdb|3FY4|A Chain A, (6-4) Photolyase Crystal Structure Length = 537 Back     alignment and structure
>pdb|3CVW|A Chain A, Drosophila Melanogaster (6-4) Photolyase H365n Mutant Bound To Ds Dna With A T-T (6-4) Photolesion And Cofactor F0 Length = 543 Back     alignment and structure
>pdb|3CVU|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Ds Dna With A T-T (6-4) Photolesion Length = 543 Back     alignment and structure
>pdb|1NP7|A Chain A, Crystal Structure Analysis Of Synechocystis Sp. Pcc6803 Cryptochrome Length = 489 Back     alignment and structure
>pdb|1IQR|A Chain A, Crystal Structure Of Dna Photolyase From Thermus Thermophilus Length = 420 Back     alignment and structure
>pdb|4GU5|A Chain A, Structure Of Full-Length Drosophila Cryptochrome Length = 539 Back     alignment and structure
>pdb|2VTB|B Chain B, Structure Of Cryptochrome 3 - Dna Complex Length = 525 Back     alignment and structure
>pdb|2J4D|A Chain A, Cryptochrome 3 From Arabidopsis Thaliana Length = 525 Back     alignment and structure
>pdb|2IJG|X Chain X, Crystal Structure Of Cryptochrome 3 From Arabidopsis Thaliana Length = 526 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query470
1owl_A484 Photolyase, deoxyribodipyrimidine photolyase; DNA 0.0
1u3d_A509 Cryptochrome 1 apoprotein; photolyase, AMPPNP, sig 0.0
1dnp_A471 DNA photolyase; DNA repair, electron transfer, exc 0.0
3fy4_A537 6-4 photolyase; DNA repair, clock cryptochrome; HE 0.0
2wq7_A543 RE11660P; lyase-DNA complex, DNA repair, DNA lesio 1e-180
1np7_A489 DNA photolyase; protein with FAD cofactor; HET: DN 1e-179
3tvs_A538 Cryptochrome-1; circadian clock light entrainment, 1e-173
2j4d_A525 Cryptochrome 3, cryptochrome DASH; DNA-binding pro 1e-171
2e0i_A440 432AA long hypothetical deoxyribodipyrimidine PHO; 1e-171
2j07_A420 Deoxyribodipyrimidine photo-lyase; flavoprotein, n 1e-168
3umv_A506 Deoxyribodipyrimidine photo-lyase; CPD cyclobutane 1e-104
2xry_A482 Deoxyribodipyrimidine photolyase; DNA damage, DNA 1e-100
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-08
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A* Length = 484 Back     alignment and structure
 Score =  539 bits (1392), Expect = 0.0
 Identities = 143/466 (30%), Positives = 225/466 (48%), Gaps = 24/466 (5%)

Query: 2   EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
           ++  +F  D  IL            R+ ++   + EL    Q   S L++        I 
Sbjct: 30  QLIGLFCLDPQILQSADMA----PARVAYLQGCLQELQQRYQQAGSRLLLLQGDPQHLIP 85

Query: 62  KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
           +L  +L  +AV  N D EP    RD  +   LK  G +     DQ++   ++IL+ +G P
Sbjct: 86  QLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTAGIRAVQLWDQLLHSPDQILSGSGNP 145

Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSN 181
           YS++  + K W  + K     + +      L+     + +  ++ + + +L  LGF    
Sbjct: 146 YSVYGPFWKNWQAQPKPT--PVATPTELVDLSP-EQLTAIAPLLLSELPTLKQLGFDWDG 202

Query: 182 LSSLGIKTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLV-K 239
                ++ G + A   L  F    I +Y+  RN+P+  GTS LS  L+FG I IR+    
Sbjct: 203 --GFPVEPGETAAIARLQEFCDRAIADYDPQRNFPAEAGTSGLSPALKFGAIGIRQAWQA 260

Query: 240 LIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYA 299
                              W  +L WR+FYQ  LY +P++ +  ++  +    WE+    
Sbjct: 261 ASAAHALSRSDEARNSIRVWQQELAWREFYQHALYHFPSLADGPYRSLWQQFPWENR--- 317

Query: 300 KKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANK 359
           +  F  W +  TGYP++D+A+ QL  +G+MHNR RM+ ASFL K++ I+W+ GE +F   
Sbjct: 318 EALFTAWTQAQTGYPIVDAAMRQLTETGWMHNRCRMIVASFLTKDLIIDWRRGEQFFMQH 377

Query: 360 LNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKY 419
           L D DLA+NNG WQWSASSG   +P  RIFNP  Q+KKFD    +I+++LP+L  +  K 
Sbjct: 378 LVDGDLAANNGGWQWSASSGMDPKP-LRIFNPASQAKKFDATATYIKRWLPELRHVHPKD 436

Query: 420 IHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
           + S              I  + YP PI+ H+L +K     YN +K 
Sbjct: 437 LISGEITP---------IERRGYPAPIVNHNLRQKQFKALYNQLKA 473
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A* Length = 509 Back     alignment and structure
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1 Length = 471 Back     alignment and structure
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana} Length = 537 Back     alignment and structure
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A* Length = 543 Back     alignment and structure
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1 Length = 489 Back     alignment and structure
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B* Length = 525 Back     alignment and structure
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii} Length = 440 Back     alignment and structure
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A* Length = 420 Back     alignment and structure
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group} Length = 506 Back     alignment and structure
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A* Length = 482 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query470
3fy4_A537 6-4 photolyase; DNA repair, clock cryptochrome; HE 100.0
1u3d_A509 Cryptochrome 1 apoprotein; photolyase, AMPPNP, sig 100.0
3tvs_A538 Cryptochrome-1; circadian clock light entrainment, 100.0
1dnp_A471 DNA photolyase; DNA repair, electron transfer, exc 100.0
2wq7_A543 RE11660P; lyase-DNA complex, DNA repair, DNA lesio 100.0
1owl_A484 Photolyase, deoxyribodipyrimidine photolyase; DNA 100.0
1np7_A489 DNA photolyase; protein with FAD cofactor; HET: DN 100.0
2e0i_A440 432AA long hypothetical deoxyribodipyrimidine PHO; 100.0
2j4d_A525 Cryptochrome 3, cryptochrome DASH; DNA-binding pro 100.0
2j07_A420 Deoxyribodipyrimidine photo-lyase; flavoprotein, n 100.0
3umv_A506 Deoxyribodipyrimidine photo-lyase; CPD cyclobutane 100.0
2xry_A482 Deoxyribodipyrimidine photolyase; DNA damage, DNA 100.0
3zxs_A522 Cryptochrome B, rscryb; lyase, cryPro, lumazine, i 100.0
3s3t_A146 Nucleotide-binding protein, universal stress PROT 81.41
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana} Back     alignment and structure
Probab=100.00  E-value=1.2e-119  Score=945.99  Aligned_cols=451  Identities=28%  Similarity=0.447  Sum_probs=394.7

Q ss_pred             cEEEEEEecCCCCCcc---------ccCCCCcHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcChHHHHHHHHHhcCcCEE
Q psy14494          2 EVYCVFIFDKNILDPL---------RSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAV   72 (470)
Q Consensus         2 ~vl~vfi~dp~~~~~~---------~~~~~~~~~r~~Fl~esL~~L~~~L~~~G~~L~v~~g~~~~~l~~L~~~~~~~~V   72 (470)
                      |||||||+||.++..+         ..    |++|++||++||++|+++|+++|++|+|+.|++.++|.+|+++++|++|
T Consensus        32 ~vlpvfi~dp~~~~~~~~~~~~g~~~~----g~~r~~Fl~~sL~~L~~~L~~~G~~L~v~~G~~~~vl~~L~~~~~~~~V  107 (537)
T 3fy4_A           32 FMYPVFVIDPHYMESDPSAFSPGSSRA----GVNRIRFLLESLKDLDSSLKKLGSRLLVFKGEPGEVLVRCLQEWKVKRL  107 (537)
T ss_dssp             CEEEEEEECHHHHSCCTTSSSSBCSSC----BHHHHHHHHHHHHHHHHHHHHTTCCCEEEESCHHHHHHHHHTTSCEEEE
T ss_pred             CEEEEEEeChhhhcccccccccccccC----CHHHHHHHHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHHHcCCCEE
Confidence            7999999999887642         24    9999999999999999999999999999999999999999999999999


Q ss_pred             EEeccCChHHHHHHHHHHHHHHHcCcEEEEEeCceeEcCCcccccC-CCCCccchHHHHHHHHHhhcccccCCCCCcccc
Q psy14494         73 MINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKT-GKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSY  151 (470)
Q Consensus        73 ~~~~~~~~~~~~rd~~v~~~l~~~~v~~~~~~~~~L~~p~~i~~~~-g~~~~vft~F~k~~~~~~~~~~~~~~~~~~~~~  151 (470)
                      ++|++|++++++||++|+++|++.||+++.+++++|++|+++.++. |++|+|||||+|+|++.....  .+. .+.|..
T Consensus       108 ~~n~~~~p~~~~RD~~v~~~l~~~gI~~~~~~~~~L~~p~~v~~~~~~~~y~vftpf~k~~~~~~~~~--~p~-~~~p~~  184 (537)
T 3fy4_A          108 CFEYDTDPYYQALDVKVKDYASSTGVEVFSPVSHTLFNPAHIIEKNGGKPPLSYQSFLKVAGEPSCAK--SEL-VMSYSS  184 (537)
T ss_dssp             EECCCCSHHHHHHHHHHHHHHHHTTCEEECCCCSSSSCHHHHHHHTSSSCCSSHHHHHHHHCCCTTTT--CCC-CCCCSC
T ss_pred             EEeccccHHHHHHHHHHHHHHHHcCCeEEEecCCEEEchhhcccCCCCCCCCccCHHHHHHHhhcCCc--CCC-CCcccc
Confidence            9999999999999999999999999999999999999999998554 679999999999997642111  010 111111


Q ss_pred             cccccccchhhhhccCcCCCcccCCCCcCCC-CCCCCCccHHHHHHHHHHHHH---HhhcccccCCCCC---CCCCCccc
Q psy14494        152 LNNLVHSSKLHKIINNNIISLNDLGFCKSNL-SSLGIKTGASGAKILLNNFIK---KIKNYNINRNYPS---INGTSYLS  224 (470)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~-~~~~~~gGe~~A~~~L~~Fl~---~l~~Y~~~r~~p~---~~~tS~LS  224 (470)
                         ++..+....+....+|+++++++..... ....|+|||++|+++|++|++   .+.+|++.||.|+   .++||+||
T Consensus       185 ---~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~~~~~~~Ge~~A~~~L~~Fl~~~~~l~~Y~~~rd~p~~~~~~~tS~LS  261 (537)
T 3fy4_A          185 ---LPPIGDIGNLGISEVPSLEELGYKDDEQADWTPFRGGESEALKRLTKSISDKAWVANFEKPKGDPSAFLKPATTVMS  261 (537)
T ss_dssp             ---CCCCCCCCSSCCCCCCCTTTTTCCGGGSSCCCSCCCSHHHHHHHHHHHTCCHHHHHTCCGGGCCTTCCSSCSSCCCH
T ss_pred             ---CCCcccccccccccCCcHHhcCCCcccccccCCCCccHHHHHHHHHHHHhCchHHhhhcccccCccccCCCCCccCC
Confidence               1110000001123467777777754221 123589999999999999996   4999999999996   58999999


Q ss_pred             HhhhcCCccHHHHHHHHHHHhhhhcccCCcchHHHHHHHHHHHHHHHHHHhCCcccccccchhhccCCCCCchhhhHHHh
Q psy14494        225 IHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFL  304 (470)
Q Consensus       225 pyL~~G~iS~R~v~~~~~~~~~~~~~~~~~~~~~f~~eL~WRef~~~~~~~~p~~~~~~~~~~~~~~~w~~d~~~~~~~~  304 (470)
                      |||+|||||||+|++++.+..... ....++.++|++||+|||||+++++++|++...++++.++.++|++|+   +.|+
T Consensus       262 pyL~~G~lS~r~v~~~~~~~~~~~-~~~~~~~~~f~~eL~WRef~~~~~~~~p~~~~~~~~~~~~~~~w~~~~---~~~~  337 (537)
T 3fy4_A          262 PYLKFGCLSSRYFYQCLQNIYKDV-KKHTSPPVSLLGQLLWREFFYTTAFGTPNFDKMKGNRICKQIPWNEDH---AMLA  337 (537)
T ss_dssp             HHHHTTSSCHHHHHHHHHHHHHTT-SCCCCTTTSHHHHHHHHHHHHHHHHTCTTTTSSTTCTTSCCCCCBCCH---HHHH
T ss_pred             HHHhCCCcCHHHHHHHHHHHHhhc-ccccccHHHHHHHHHHHHHHHHHHHHCcchhcccCChhhhcCCchhhh---HHHH
Confidence            999999999999999998754221 122456678999999999999999999999888999999999999998   8999


Q ss_pred             hhhcCCCCchHHHHHHHHHHHhcCCchHHHHHHHHHHHH-hcCCCChHHHHHHHHhccccCCCCCcchhhhhhccCCCCC
Q psy14494        305 NWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIK-NMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQ  383 (470)
Q Consensus       305 ~w~~G~TG~p~vDA~mrqL~~tG~mhnr~Rm~~asfl~k-~L~idW~~g~~~F~~~LiD~d~a~n~~~wqw~ag~G~d~~  383 (470)
                      +|++|+|||||||||||||++|||||||+|||||||||| +|+|||++|++||+++|||||+|||+|||||+||||+|++
T Consensus       338 aW~~G~TG~P~vDA~MrqL~~tG~mHnr~Rm~vAsfl~k~~L~idWr~G~~~F~~~liD~D~a~n~g~Wqw~ag~g~d~~  417 (537)
T 3fy4_A          338 AWRDGKTGYPWIDAIMVQLLKWGWMHHLARHCVACFLTRGDLFIHWEQGRDVFERLLIDSDWAINNGNWMWLSCSSFFYQ  417 (537)
T ss_dssp             HHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTTTTCBCHHHHHHHHHHHCTTCCHHHHHHHHHHHTTSSSCCC
T ss_pred             HHHcCCCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHccccccccChHhhhhhcccCCCcc
Confidence            999999999999999999999999999999999999997 9999999999999999999999999999999999999987


Q ss_pred             CcccccChhhhhhhcCCcchhHHhhccccccCCCccccCccccChHHHHHcCCccCCCCCCCCCChHHHHHHHHHHHHHH
Q psy14494        384 PFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFI  463 (470)
Q Consensus       384 p~~R~~np~~q~~k~Dp~g~yIr~w~PeL~~~p~~~ih~pw~~~~~~~~~~~~~~~~~YP~pivd~~~~~~~~~~~~~~~  463 (470)
                       |||||||++|++||||+|+|||+|||||+++|+++||+||+++..+|+++||.+|.+||.|||||+++|++|+++|++.
T Consensus       418 -~fRifNP~~Q~~kfDp~G~yIr~wvPEL~~lp~~~Ih~Pw~~~~~~~~~~g~~~g~~YP~PIVdh~~ar~~a~~~~~~~  496 (537)
T 3fy4_A          418 -FNRIYSPISFGKKYDPDGKYIRHFLPVLKDMPKQYIYEPWTAPLSVQTKANCIVGKDYPKPMVLHDSASKECKRKMGEA  496 (537)
T ss_dssp             -TTCCCCTTTTGGGTCTTCHHHHHHCGGGTTCCTTTTTCGGGSCHHHHHHHTCCBTTTBCCCSSCHHHHHHHHHHHHHHH
T ss_pred             -cccccCHHHHHHHhCCCchHHHHhCHhhcCCCHHhhCCcccCCHHHHHhcCCccCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence             8999999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             HHHh
Q psy14494        464 KNIL  467 (470)
Q Consensus       464 ~~~~  467 (470)
                      .+..
T Consensus       497 ~~~~  500 (537)
T 3fy4_A          497 YALN  500 (537)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7643
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A* Back     alignment and structure
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1 Back     alignment and structure
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A* Back     alignment and structure
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A* Back     alignment and structure
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1 Back     alignment and structure
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii} Back     alignment and structure
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B* Back     alignment and structure
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A* Back     alignment and structure
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group} Back     alignment and structure
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A* Back     alignment and structure
>3zxs_A Cryptochrome B, rscryb; lyase, cryPro, lumazine, iron-sulfur-cluster; HET: FAD DLZ; 2.70A {Rhodobacter sphaeroides} Back     alignment and structure
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 470
d1dnpa1269 a.99.1.1 (A:201-469) C-terminal domain of DNA phot 6e-58
d1u3da1300 a.99.1.1 (A:198-497) Cryptochrome C-terminal domai 1e-53
d1np7a1279 a.99.1.1 (A:205-483) Cryptochrome C-terminal domai 2e-47
d1owla1271 a.99.1.1 (A:205-475) C-terminal domain of DNA phot 1e-42
d2j07a1234 a.99.1.1 (A:172-405) C-terminal domain of DNA phot 2e-41
d1owla2202 c.28.1.1 (A:3-204) DNA photolyase {Synechococcus e 4e-09
d1np7a2204 c.28.1.1 (A:1-204) Cryptochrome {Synechocystis sp. 5e-09
d1u3da2185 c.28.1.1 (A:13-197) Cryptochrome {Thale cress (Ara 6e-09
d1dnpa2200 c.28.1.1 (A:1-200) DNA photolyase {Escherichia col 2e-08
d2j07a2170 c.28.1.1 (A:2-171) DNA photolyase {Thermus thermop 4e-07
>d1dnpa1 a.99.1.1 (A:201-469) C-terminal domain of DNA photolyase {Escherichia coli [TaxId: 562]} Length = 269 Back     information, alignment and structure

class: All alpha proteins
fold: Cryptochrome/photolyase FAD-binding domain
superfamily: Cryptochrome/photolyase FAD-binding domain
family: Cryptochrome/photolyase FAD-binding domain
domain: C-terminal domain of DNA photolyase
species: Escherichia coli [TaxId: 562]

 Score =  190 bits (483), Expect = 6e-58
 Identities = 102/277 (36%), Positives = 161/277 (58%), Gaps = 11/277 (3%)

Query: 189 TGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKK 247
                A   L  F +     Y   R++P++ GTS LS  L  G +S R+ +  +     +
Sbjct: 2   VEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQ 61

Query: 248 HYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWC 307
                      WL++LIWR+FY+ ++  +P++        + + +    N    +   W 
Sbjct: 62  ALDGGA--GSVWLNELIWREFYRHLITYHPSLCKHRPFIAWTDRVQWQSN--PAHLQAWQ 117

Query: 308 KGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLAS 367
           +G TGYP++D+A+ QLNS+G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+
Sbjct: 118 EGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAA 177

Query: 368 NNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKAS 427
           NNG WQW+AS+G  + P+FRIFNP  Q +KFD++G FIR++LP+L  +  K +H PWK +
Sbjct: 178 NNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDHEGEFIRQWLPELRDVPGKVVHEPWKWA 237

Query: 428 SYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIK 464
                     +  +YP+PI+EH  ++   L  Y   +
Sbjct: 238 ------QKAGVTLDYPQPIVEHKEARVQTLAAYEAAR 268
>d1u3da1 a.99.1.1 (A:198-497) Cryptochrome C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 300 Back     information, alignment and structure
>d1np7a1 a.99.1.1 (A:205-483) Cryptochrome C-terminal domain {Synechocystis sp., pcc 6803 [TaxId: 1143]} Length = 279 Back     information, alignment and structure
>d1owla1 a.99.1.1 (A:205-475) C-terminal domain of DNA photolyase {Synechococcus elongatus [TaxId: 32046]} Length = 271 Back     information, alignment and structure
>d2j07a1 a.99.1.1 (A:172-405) C-terminal domain of DNA photolyase {Thermus thermophilus [TaxId: 274]} Length = 234 Back     information, alignment and structure
>d1owla2 c.28.1.1 (A:3-204) DNA photolyase {Synechococcus elongatus [TaxId: 32046]} Length = 202 Back     information, alignment and structure
>d1np7a2 c.28.1.1 (A:1-204) Cryptochrome {Synechocystis sp., pcc 6803 [TaxId: 1143]} Length = 204 Back     information, alignment and structure
>d1u3da2 c.28.1.1 (A:13-197) Cryptochrome {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 185 Back     information, alignment and structure
>d1dnpa2 c.28.1.1 (A:1-200) DNA photolyase {Escherichia coli [TaxId: 562]} Length = 200 Back     information, alignment and structure
>d2j07a2 c.28.1.1 (A:2-171) DNA photolyase {Thermus thermophilus [TaxId: 274]} Length = 170 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query470
d1u3da1300 Cryptochrome C-terminal domain {Thale cress (Arabi 100.0
d1np7a1279 Cryptochrome C-terminal domain {Synechocystis sp., 100.0
d1dnpa1269 C-terminal domain of DNA photolyase {Escherichia c 100.0
d1owla1271 C-terminal domain of DNA photolyase {Synechococcus 100.0
d2j07a1234 C-terminal domain of DNA photolyase {Thermus therm 100.0
d1owla2202 DNA photolyase {Synechococcus elongatus [TaxId: 32 99.96
d1u3da2185 Cryptochrome {Thale cress (Arabidopsis thaliana) [ 99.95
d1np7a2204 Cryptochrome {Synechocystis sp., pcc 6803 [TaxId: 99.94
d1dnpa2200 DNA photolyase {Escherichia coli [TaxId: 562]} 99.93
d2j07a2170 DNA photolyase {Thermus thermophilus [TaxId: 274]} 99.9
>d1u3da1 a.99.1.1 (A:198-497) Cryptochrome C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All alpha proteins
fold: Cryptochrome/photolyase FAD-binding domain
superfamily: Cryptochrome/photolyase FAD-binding domain
family: Cryptochrome/photolyase FAD-binding domain
domain: Cryptochrome C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=4.7e-91  Score=681.88  Aligned_cols=279  Identities=32%  Similarity=0.583  Sum_probs=261.5

Q ss_pred             CCccHHHHHHHHHHHHH-HhhcccccCCCCCCCCCCcccHhhhcCCccHHHHHHHHHHHhhhhc----ccCCcchHHHHH
Q psy14494        187 IKTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHY----KTDCIGYFTWLS  261 (470)
Q Consensus       187 ~~gGe~~A~~~L~~Fl~-~l~~Y~~~r~~p~~~~tS~LSpyL~~G~iS~R~v~~~~~~~~~~~~----~~~~~~~~~f~~  261 (470)
                      |++||++|+++|++|++ ++.+|.++||.|+.++||+|||||+|||||+|+|++++........    .....+.+.|++
T Consensus        16 W~pGe~~A~~~L~~Fl~~~l~~Y~~~Rn~p~~~~tSrLSPyL~~G~IS~ReV~~~v~~~~~~~~~~~~~~~~~~~~~fi~   95 (300)
T d1u3da1          16 WSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLK   95 (300)
T ss_dssp             CCCSHHHHHHHHHHHHTTGGGGTTTTTTCSSSTTSCCCHHHHHTTSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHhhHHHHhhhcCCCCccCCccccHHHcCCCCCHHHHHHHHHHHHHhhhhhccccccccHHHHHH
Confidence            78999999999999999 9999999999999999999999999999999999999865432110    011234567999


Q ss_pred             HHHHHHHHHHHHHhCCcccccccchhhccCCCCCchhhhHHHhhhhcCCCCchHHHHHHHHHHHhcCCchHHHHHHHHHH
Q psy14494        262 QLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFL  341 (470)
Q Consensus       262 eL~WRef~~~~~~~~p~~~~~~~~~~~~~~~w~~d~~~~~~~~~w~~G~TG~p~vDA~mrqL~~tG~mhnr~Rm~~asfl  341 (470)
                      ||+||||++++++++|.....+..+.++.++|+.|+   +.+++|++|+||+||||||||||++|||||||+||||||||
T Consensus        96 eL~wRef~~~~~~~~~~~~~~~~~~~~~~~~~~~d~---~~~~~w~~G~TG~p~vDA~mr~L~~tG~mhnr~Rm~vaSfl  172 (300)
T d1u3da1          96 SIGLREYSRYISFNHPYSHERPLLGHLKFFPWAVDE---NYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFF  172 (300)
T ss_dssp             HHHHHHHHHHHHHSSTTTTTSCSCCTTTTCCCCCCH---HHHHHHHHTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhhhhcchhhhhhccccccCH---HHHHHHHhhcccchHHHHHHHHHHhhchhHHHHHHHHHHHH
Confidence            999999999999999998888888888888999998   89999999999999999999999999999999999999999


Q ss_pred             HHhcCCCChHHHHHHHHhccccCCCCCcchhhhhhccCCCCCCcccccChhhhhhhcCCcchhHHhhccccccCCCcccc
Q psy14494        342 IKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIH  421 (470)
Q Consensus       342 ~k~L~idW~~g~~~F~~~LiD~d~a~n~~~wqw~ag~G~d~~p~~R~~np~~q~~k~Dp~g~yIr~w~PeL~~~p~~~ih  421 (470)
                      |++|+|||+.|++||+++|||||+++|++||||+||+|++++||+|||||++|+++|||+|+|||+|||||+++|+++||
T Consensus       173 ~~~L~i~W~~ga~~f~~~l~D~d~a~n~~~wq~~ag~g~~~~~~~ri~np~~q~~~~Dp~g~fir~wvPEL~~~p~~~ih  252 (300)
T d1u3da1         173 VKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIH  252 (300)
T ss_dssp             HHTSCCCHHHHHHHHHHHCTTCCHHHHHHHHHHHHTCSTTCCCSSCCCCHHHHHHHHCTTSHHHHHHCGGGTTCCHHHHT
T ss_pred             HHHcccchhhHHHHHHHHHhccchhhHHHHHHHHHhcccchhhccccccHHHHHHHhcCcchHHHHhChhhhcCCHHHhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccccChHHHHHcCCccCCCCCCCCCChHHHHHHHHHHHHHHHHHhh
Q psy14494        422 SPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNILN  468 (470)
Q Consensus       422 ~pw~~~~~~~~~~~~~~~~~YP~pivd~~~~~~~~~~~~~~~~~~~~  468 (470)
                      +||++|..+|+.+||.+|.+||+|||||+++|++++++|+++.+.++
T Consensus       253 ~Pw~~~~~~~~~~~~~~g~~Yp~pivd~~~~~~r~~~~~~~~~~~~~  299 (300)
T d1u3da1         253 HPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEALSQMWQLEA  299 (300)
T ss_dssp             CTTTSCHHHHHHHTCCBTTTBCCCSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred             CcccCCHHHHHHcCCccCCCCCcccCCHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999887654
>d1np7a1 a.99.1.1 (A:205-483) Cryptochrome C-terminal domain {Synechocystis sp., pcc 6803 [TaxId: 1143]} Back     information, alignment and structure
>d1dnpa1 a.99.1.1 (A:201-469) C-terminal domain of DNA photolyase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1owla1 a.99.1.1 (A:205-475) C-terminal domain of DNA photolyase {Synechococcus elongatus [TaxId: 32046]} Back     information, alignment and structure
>d2j07a1 a.99.1.1 (A:172-405) C-terminal domain of DNA photolyase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1owla2 c.28.1.1 (A:3-204) DNA photolyase {Synechococcus elongatus [TaxId: 32046]} Back     information, alignment and structure
>d1u3da2 c.28.1.1 (A:13-197) Cryptochrome {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1np7a2 c.28.1.1 (A:1-204) Cryptochrome {Synechocystis sp., pcc 6803 [TaxId: 1143]} Back     information, alignment and structure
>d1dnpa2 c.28.1.1 (A:1-200) DNA photolyase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2j07a2 c.28.1.1 (A:2-171) DNA photolyase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure