Psyllid ID: psy144

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250----
MFPVMENNTKTPEGPSNAESETDEDDEFAPALPEALDHISYDFVKKSVEDIRQRSEEFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGKEWTTDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKEEGKRKKHYYHEMSVSLACGIMLAAIQYCGLVTLTSTPLNAGPALRTLLDRPGNEKLALLLPIGYPALDCTVPNLKRKDIEDIIVEF
cccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHccccccccccEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHcccccHHHHcccccHHHHHHHccccEEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHcccEEEEEEccccHHHHHHHcccccccEEEEEEEEccccccccccccccccccccEEEc
cccccccccccccccccHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccHHccccccccHHHHHHHHHHHccccccccccccEEEEEccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccccccHHHHcccEEEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHcccEEEEccccccHHHHHHHHccccccEEEEEEEcccccccccccccccccHHHHEEEc
mfpvmenntktpegpsnaesetdeddefapalpealdhISYDFVKKSVEDIRQRSEEFYQLMNARrtvrffsdeavpKEIIHNIIktagtspsgahtepwtfVIVEDKDMKAKIRDIVESEerinydkrmgkewttdlrplktswqkeylttaPYLVVVFKQtygfkeegkrkkhyYHEMSVSLACGIMLAAIQYCGLvtltstplnagpalrtlldrpgneklalllpigypaldctvpnlkrkdieDIIVEF
mfpvmenntktpegpsnaesetdEDDEFAPALPEALDHISYDFVKKSVEDIRQRSEEFYQLMNARRTVRFFSDEAVPKEIIHNIiktagtspsgahtePWTFvivedkdmkAKIRdiveseerinydkrmgkewttdlrplktswqkeylttapYLVVVFKQTYGFKEEGKRKKHYYHEMSVSLACGIMLAAIQYCGLVTLTSTPLNAGPALRTLLDRPGNEKLALLLPIgypaldctvpnlkrkdieDIIVEF
MFPVMENNTKTPEGPSNAESETDEDDEFAPALPEALDHISYDFVKKSVEDIRQRSEEFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGKEWTTDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKEEGKRKKHYYHEMSVSLACGIMLAAIQYCGLVTLTSTPLNAGPALRTLLDRPGNEKLALLLPIGYPALDCTVPNLKRKDIEDIIVEF
**********************************ALDHISYDFVKKSVEDIRQRSEEFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGKEWTTDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKEEGKRKKHYYHEMSVSLACGIMLAAIQYCGLVTLTSTPLNAGPALRTLLDRPGNEKLALLLPIGYPALDCTVPNLKRKDIEDII***
MFPV***********************************************RQRSEEFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGKEWTTDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKEEGKRKKHYYHEMSVSLACGIMLAAIQYCGLVTLTSTPLNAGPALRTLLDRPGNEKLALLLPIGYPALDCTVPNLKRKDIEDIIVEF
****************************APALPEALDHISYDFVKKSVEDIRQRSEEFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGKEWTTDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKEEGKRKKHYYHEMSVSLACGIMLAAIQYCGLVTLTSTPLNAGPALRTLLDRPGNEKLALLLPIGYPALDCTVPNLKRKDIEDIIVEF
***********************************LDHISYDFVKKSVEDIRQRSEEFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGKEWTTDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKEEGKRKKHYYHEMSVSLACGIMLAAIQYCGLVTLTSTPLNAGPALRTLLDRPGNEKLALLLPIGYPALDCTVPNLKRKDIEDIIVEF
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MFPVMENNTKTPEGPSNAESETDEDDEFAPALPEALDHISYDFVKKSVEDIRQRSEEFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGKEWTTDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKEEGKRKKHYYHEMSVSLACGIMLAAIQYCGLVTLTSTPLNAGPALRTLLDRPGNEKLALLLPIGYPALDCTVPNLKRKDIEDIIVEF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query254 2.2.26 [Sep-21-2011]
Q9DCX8285 Iodotyrosine dehalogenase yes N/A 0.933 0.831 0.578 3e-77
Q5REW1289 Iodotyrosine dehalogenase yes N/A 0.968 0.851 0.544 3e-77
Q5BK17285 Iodotyrosine dehalogenase yes N/A 0.913 0.814 0.577 2e-75
Q6PHW0289 Iodotyrosine dehalogenase yes N/A 0.968 0.851 0.548 5e-74
Q6TA49289 Iodotyrosine dehalogenase yes N/A 0.913 0.802 0.543 7e-70
P34273344 Uncharacterized protein C yes N/A 0.795 0.587 0.441 2e-46
O28017174 Putative NADH dehydrogena yes N/A 0.232 0.339 0.355 2e-06
O31571194 Putative NAD(P)H nitrored yes N/A 0.669 0.876 0.258 2e-06
A0QTG1454 Coenzyme F420:L-glutamate yes N/A 0.614 0.343 0.267 9e-06
O25608210 Oxygen-insensitive NADPH yes N/A 0.649 0.785 0.284 8e-05
>sp|Q9DCX8|IYD1_MOUSE Iodotyrosine dehalogenase 1 OS=Mus musculus GN=Iyd PE=1 SV=1 Back     alignment and function desciption
 Score =  288 bits (737), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 137/237 (57%), Positives = 183/237 (77%)

Query: 16  SNAESETDEDDEFAPALPEALDHISYDFVKKSVEDIRQRSEEFYQLMNARRTVRFFSDEA 75
           S  + + +ED E      E+++HI +   +   +++R RS+EFY+L+N RR+VRF S E 
Sbjct: 47  STEDLQVEEDAEEWQEAEESVEHIPFSHTRYPEQEMRMRSQEFYELLNKRRSVRFISSEH 106

Query: 76  VPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGKEWT 135
           VP E+I N+IK AGT+PSGAHTEPWTFV+V+D DMK KIR+I+E EE INY KRMGK W 
Sbjct: 107 VPMEVIENVIKAAGTAPSGAHTEPWTFVVVKDPDMKHKIREIIEEEEEINYMKRMGKRWV 166

Query: 136 TDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKEEGKRKKHYYHEMSVSLACGIMLAAIQY 195
           TDL+ L+T+W KEYL TAP L+++FKQ +GF   GK+K HYY+E+SVS+ACG++LAA+Q 
Sbjct: 167 TDLKKLRTNWIKEYLDTAPVLILIFKQVHGFAANGKKKVHYYNEISVSIACGLLLAALQN 226

Query: 196 CGLVTLTSTPLNAGPALRTLLDRPGNEKLALLLPIGYPALDCTVPNLKRKDIEDIIV 252
            GLVT+T+TPLN GP LR LL RP +EKL +LLP+GYP+ D TVP+LKRK ++ I+V
Sbjct: 227 AGLVTVTTTPLNCGPRLRVLLGRPSHEKLLVLLPVGYPSRDATVPDLKRKALDQIMV 283
Catalyzes the oxidative NADPH-dependent deiodination of monoiodotyrosine (L-MIT) or diiodotyrosine (L-DIT). Acts during the hydrolysis of thyroglobulin to liberate iodide, which can then reenter the hormone-producing pathways. Acts more efficiently on monoiodotyrosine than on diiodotyrosine.
Mus musculus (taxid: 10090)
EC: 1EC: .EC: 2EC: 2EC: .EC: 1EC: .EC: 1
>sp|Q5REW1|IYD1_PONAB Iodotyrosine dehalogenase 1 OS=Pongo abelii GN=IYD PE=2 SV=1 Back     alignment and function description
>sp|Q5BK17|IYD1_RAT Iodotyrosine dehalogenase 1 OS=Rattus norvegicus GN=Iyd PE=2 SV=1 Back     alignment and function description
>sp|Q6PHW0|IYD1_HUMAN Iodotyrosine dehalogenase 1 OS=Homo sapiens GN=IYD PE=1 SV=2 Back     alignment and function description
>sp|Q6TA49|IYD1_PIG Iodotyrosine dehalogenase 1 OS=Sus scrofa GN=IYD PE=2 SV=1 Back     alignment and function description
>sp|P34273|YKH5_CAEEL Uncharacterized protein C02C2.5 OS=Caenorhabditis elegans GN=C02C2.5 PE=3 SV=2 Back     alignment and function description
>sp|O28017|Y2267_ARCFU Putative NADH dehydrogenase/NAD(P)H nitroreductase AF_2267 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=AF_2267 PE=3 SV=1 Back     alignment and function description
>sp|O31571|YFHC_BACSU Putative NAD(P)H nitroreductase YfhC OS=Bacillus subtilis (strain 168) GN=yfhC PE=3 SV=1 Back     alignment and function description
>sp|A0QTG1|FBIB_MYCS2 Coenzyme F420:L-glutamate ligase OS=Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) GN=fbiB PE=1 SV=1 Back     alignment and function description
>sp|O25608|RDXA_HELPY Oxygen-insensitive NADPH nitroreductase OS=Helicobacter pylori (strain ATCC 700392 / 26695) GN=rdxA PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query254
322796297297 hypothetical protein SINV_02996 [Solenop 0.937 0.801 0.630 4e-87
332030885254 Iodotyrosine dehalogenase 1 [Acromyrmex 0.897 0.897 0.635 3e-85
307195047248 Iodotyrosine dehalogenase 1 [Harpegnatho 0.881 0.903 0.665 6e-85
307169875278 Iodotyrosine dehalogenase 1 [Camponotus 0.905 0.827 0.630 2e-84
383855892292 PREDICTED: iodotyrosine dehalogenase 1-l 0.917 0.797 0.615 3e-83
328778648282 PREDICTED: iodotyrosine dehalogenase 1-l 0.921 0.829 0.613 2e-82
66513908294 PREDICTED: iodotyrosine dehalogenase 1-l 0.921 0.795 0.613 2e-82
156544740303 PREDICTED: iodotyrosine dehalogenase 1-l 0.929 0.778 0.644 4e-82
340717373296 PREDICTED: iodotyrosine dehalogenase 1-l 0.980 0.841 0.584 9e-82
340717375283 PREDICTED: iodotyrosine dehalogenase 1-l 0.925 0.830 0.605 1e-81
>gi|322796297|gb|EFZ18868.1| hypothetical protein SINV_02996 [Solenopsis invicta] Back     alignment and taxonomy information
 Score =  327 bits (837), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 150/238 (63%), Positives = 188/238 (78%)

Query: 17  NAESETDEDDEFAPALPEALDHISYDFVKKSVEDIRQRSEEFYQLMNARRTVRFFSDEAV 76
           ++E E ++  E  PALP  L H+ Y +V+KS +++  R+ EFY +  ARRT+RFFS + V
Sbjct: 59  SSEKENEKSLEVEPALPRDLKHMPYHYVRKSEKELLARALEFYHITAARRTLRFFSADPV 118

Query: 77  PKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGKEWTT 136
           PKE+I  II+ AGT+PSGAHTEPWTFV + +   K++IRDIVE EE INY KRMG +WTT
Sbjct: 119 PKEVIREIIRAAGTAPSGAHTEPWTFVAISNPTTKSQIRDIVEQEEEINYKKRMGIKWTT 178

Query: 137 DLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKEEGKRKKHYYHEMSVSLACGIMLAAIQYC 196
           DL PLKT+W KEYLTTAPYL++VFKQTYG    G++K HYYHE+SVS+ACGI+L AIQY 
Sbjct: 179 DLSPLKTNWIKEYLTTAPYLILVFKQTYGIMPNGQKKIHYYHEISVSIACGILLTAIQYA 238

Query: 197 GLVTLTSTPLNAGPALRTLLDRPGNEKLALLLPIGYPALDCTVPNLKRKDIEDIIVEF 254
           GLV+LTSTPLN GPA+R LL RP NEKL LLLP+GYPA D TVP+L+RKD+ +I+VE 
Sbjct: 239 GLVSLTSTPLNCGPAIRNLLGRPSNEKLTLLLPVGYPAEDATVPDLRRKDLSEILVEI 296

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|332030885|gb|EGI70521.1| Iodotyrosine dehalogenase 1 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|307195047|gb|EFN77105.1| Iodotyrosine dehalogenase 1 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|307169875|gb|EFN62384.1| Iodotyrosine dehalogenase 1 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|383855892|ref|XP_003703444.1| PREDICTED: iodotyrosine dehalogenase 1-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|328778648|ref|XP_003249527.1| PREDICTED: iodotyrosine dehalogenase 1-like isoform 1 [Apis mellifera] Back     alignment and taxonomy information
>gi|66513908|ref|XP_397179.2| PREDICTED: iodotyrosine dehalogenase 1-like isoform 2 [Apis mellifera] Back     alignment and taxonomy information
>gi|156544740|ref|XP_001605909.1| PREDICTED: iodotyrosine dehalogenase 1-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|340717373|ref|XP_003397158.1| PREDICTED: iodotyrosine dehalogenase 1-like isoform 1 [Bombus terrestris] Back     alignment and taxonomy information
>gi|340717375|ref|XP_003397159.1| PREDICTED: iodotyrosine dehalogenase 1-like isoform 2 [Bombus terrestris] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query254
ZFIN|ZDB-GENE-090313-311295 iyd "iodotyrosine deiodinase" 0.933 0.803 0.586 1.3e-75
MGI|MGI:1917587285 Iyd "iodotyrosine deiodinase" 0.933 0.831 0.578 1.7e-75
UNIPROTKB|E1C0X6291 IYD "Uncharacterized protein" 0.913 0.797 0.599 4e-74
RGD|1309288285 Iyd "iodotyrosine deiodinase" 0.929 0.828 0.573 5.1e-74
UNIPROTKB|E2R3F8290 IYD "Uncharacterized protein" 0.909 0.796 0.575 4.6e-73
UNIPROTKB|A7MBC8287 IYD "Uncharacterized protein" 0.968 0.857 0.544 1.2e-72
UNIPROTKB|Q6PHW0289 IYD "Iodotyrosine dehalogenase 0.968 0.851 0.548 1.6e-72
UNIPROTKB|Q6TA49289 IYD "Iodotyrosine dehalogenase 0.909 0.799 0.549 2.1e-70
FB|FBgn0036125757 CG6279 [Drosophila melanogaste 0.909 0.305 0.510 7.1e-61
UNIPROTKB|C9JXJ9270 IYD "Iodotyrosine dehalogenase 0.893 0.840 0.472 1.9e-53
ZFIN|ZDB-GENE-090313-311 iyd "iodotyrosine deiodinase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 762 (273.3 bits), Expect = 1.3e-75, P = 1.3e-75
 Identities = 139/237 (58%), Positives = 181/237 (76%)

Query:    16 SNAESETDEDDEFAPALPEALDHISYDFVKKSVEDIRQRSEEFYQLMNARRTVRFFSDEA 75
             S+ ++E + +D       E L H+ Y  V+ SV ++  RSE FY LMN RR+VRF S E 
Sbjct:    57 SSKDNEENNEDWMDTTDEENLPHVPYSPVQYSVSEMLDRSERFYSLMNLRRSVRFISPEP 116

Query:    76 VPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGKEWT 135
             VPKE+I N+I+TAGT+PSGAHTEPWTFV+V D D+K +IR+I+E EE INY +RMG +W 
Sbjct:   117 VPKEVIDNVIRTAGTAPSGAHTEPWTFVVVSDHDVKHRIREIIEEEEEINYKQRMGNKWV 176

Query:   136 TDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKEEGKRKKHYYHEMSVSLACGIMLAAIQY 195
              DL+ L+T+W KEYL  APYL++VFKQ YG    GK+K HYY+E+SVS++CGI+LAA+Q 
Sbjct:   177 QDLKRLRTNWVKEYLDVAPYLILVFKQAYGILPSGKKKTHYYNEISVSISCGILLAALQN 236

Query:   196 CGLVTLTSTPLNAGPALRTLLDRPGNEKLALLLPIGYPALDCTVPNLKRKDIEDIIV 252
              GLVT+T+TPLN GP LR+LL RP NEKL +LLP+G+PA D  VP+LKRKD+ DI+V
Sbjct:   237 AGLVTVTTTPLNCGPQLRSLLQRPANEKLLMLLPVGFPASDAKVPDLKRKDLNDIMV 293
GO:0016491 "oxidoreductase activity" evidence=IEA
MGI|MGI:1917587 Iyd "iodotyrosine deiodinase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E1C0X6 IYD "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
RGD|1309288 Iyd "iodotyrosine deiodinase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E2R3F8 IYD "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|A7MBC8 IYD "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q6PHW0 IYD "Iodotyrosine dehalogenase 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q6TA49 IYD "Iodotyrosine dehalogenase 1" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
FB|FBgn0036125 CG6279 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|C9JXJ9 IYD "Iodotyrosine dehalogenase 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9DCX8IYD1_MOUSE1, ., 2, 2, ., 1, ., 10.57800.93300.8315yesN/A
Q6PHW0IYD1_HUMAN1, ., 2, 2, ., 1, ., 10.5480.96850.8512yesN/A
Q5BK17IYD1_RAT1, ., 2, 2, ., 1, ., 10.57750.91330.8140yesN/A
Q6TA49IYD1_PIG1, ., 2, 2, ., 1, ., 10.54310.91330.8027yesN/A
Q5REW1IYD1_PONAB1, ., 2, 2, ., 1, ., 10.5440.96850.8512yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query254
cd02144193 cd02144, iodotyrosine_dehalogenase, Iodotyrosine d 1e-108
pfam00881163 pfam00881, Nitroreductase, Nitroreductase family 7e-29
cd02139164 cd02139, Nitroreductase_3, Nitroreductase-like fam 5e-23
cd02150166 cd02150, NADPH_oxidoreductase_1, NAD(P)H:flavin ox 6e-20
cd02062122 cd02062, Nitro_FMN_reductase, Proteins of this fam 2e-18
COG0778207 COG0778, NfnB, Nitroreductase [Energy production a 2e-17
cd02145196 cd02145, BluB, Subfamily of the nitroreductase fam 8e-14
cd02137148 cd02137, Nitroreductase_1, Nitroreductase-like fam 3e-13
cd02135160 cd02135, Arsenite_oxidase, Nitroreductase-like fam 4e-13
TIGR02476205 TIGR02476, BluB, 5,6-dimethylbenzimidazole synthas 5e-12
cd02136178 cd02136, Nitroreductase, Nitroreductase family 2e-11
PRK13294448 PRK13294, PRK13294, F420-0--gamma-glutamyl ligase; 3e-11
TIGR03553194 TIGR03553, F420_FbiB_CTERM, F420 biosynthesis prot 1e-10
cd02146229 cd02146, NfsA_FRP, This family contains NADPH-depe 1e-10
cd03370156 cd03370, NADH_oxidase, NADPH_oxidase 3e-10
cd02149157 cd02149, NfsB_like_nitroreductase, NAD(P)H:FMN oxi 4e-10
cd02151162 cd02151, NADPH_oxidoreductase_2, NAD(P)H:flavin ox 9e-10
cd02143147 cd02143, NADH_nitroreductase, Nitroreductase famil 2e-08
>gnl|CDD|239058 cd02144, iodotyrosine_dehalogenase, Iodotyrosine dehalogenase catalyzes the removal of iodine from the 3, 5 positions of L-tyosine in thyroid, liver and kidney, using NADPH as electron donor Back     alignment and domain information 
 Score =  309 bits (794), Expect = e-108
 Identities = 122/193 (63%), Positives = 156/193 (80%)

Query: 58  FYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDI 117
           FY+LM  RR+VR FSDE VP+E+I N I+TAGT+PSGA+T+PWTFV+V D ++K +IR+I
Sbjct: 1   FYELMKRRRSVRKFSDEPVPREVIENCIRTAGTAPSGANTQPWTFVVVSDPELKHRIREI 60

Query: 118 VESEERINYDKRMGKEWTTDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKEEGKRKKHYY 177
            E EERINY+ RMGKEW  DL+PL T+W+K YL  APYL++VFKQ YG   +GK++ HYY
Sbjct: 61  AEEEERINYEGRMGKEWVWDLKPLGTNWRKPYLDEAPYLILVFKQKYGGLPDGKKRTHYY 120

Query: 178 HEMSVSLACGIMLAAIQYCGLVTLTSTPLNAGPALRTLLDRPGNEKLALLLPIGYPALDC 237
           +E SVS+ACG++LAA+Q  GL T+T+TPLN GP LR LL RP NEKL +LLP+GYP  D 
Sbjct: 121 NEESVSIACGLLLAALQNAGLGTVTTTPLNMGPFLRRLLGRPANEKLLMLLPVGYPDDDA 180

Query: 238 TVPNLKRKDIEDI 250
           TVP+LKRK +E+I
Sbjct: 181 TVPDLKRKPLEEI 193

This enzyme is a homolog of the nitroreductase family. These enzymes are usually homodimers. Length = 193
>gnl|CDD|216169 pfam00881, Nitroreductase, Nitroreductase family Back     alignment and domain information
>gnl|CDD|239054 cd02139, Nitroreductase_3, Nitroreductase-like family 3 Back     alignment and domain information
>gnl|CDD|239063 cd02150, NADPH_oxidoreductase_1, NAD(P)H:flavin oxidoreductase-like family 1 Back     alignment and domain information
>gnl|CDD|239015 cd02062, Nitro_FMN_reductase, Proteins of this family catalyze the reduction of flavin or nitrocompounds using NAD(P)H as electron donor in a obligatory two-electron transfer, utilizing FMN or FAD as cofactor Back     alignment and domain information
>gnl|CDD|223849 COG0778, NfnB, Nitroreductase [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|239059 cd02145, BluB, Subfamily of the nitroreductase family that includes BluB protein in Rhodobacter capsulatus is involved in the conversion of cobinamide to cobalamin in Cobalamin (vitamin B12) biosynthesis Back     alignment and domain information
>gnl|CDD|239052 cd02137, Nitroreductase_1, Nitroreductase-like family 1 Back     alignment and domain information
>gnl|CDD|239050 cd02135, Arsenite_oxidase, Nitroreductase-like family which includes NADH oxidase and arsenite oxidiase Back     alignment and domain information
>gnl|CDD|162875 TIGR02476, BluB, 5,6-dimethylbenzimidazole synthase Back     alignment and domain information
>gnl|CDD|239051 cd02136, Nitroreductase, Nitroreductase family Back     alignment and domain information
>gnl|CDD|183957 PRK13294, PRK13294, F420-0--gamma-glutamyl ligase; Provisional Back     alignment and domain information
>gnl|CDD|132592 TIGR03553, F420_FbiB_CTERM, F420 biosynthesis protein FbiB, C-terminal domain Back     alignment and domain information
>gnl|CDD|239060 cd02146, NfsA_FRP, This family contains NADPH-dependent flavin reductase and oxygen-insensitive nitroreductase Back     alignment and domain information
>gnl|CDD|239467 cd03370, NADH_oxidase, NADPH_oxidase Back     alignment and domain information
>gnl|CDD|239062 cd02149, NfsB_like_nitroreductase, NAD(P)H:FMN oxidoreductase family Back     alignment and domain information
>gnl|CDD|239064 cd02151, NADPH_oxidoreductase_2, NAD(P)H:flavin oxidoreductase-like family 2 Back     alignment and domain information
>gnl|CDD|239057 cd02143, NADH_nitroreductase, Nitroreductase family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 254
cd02144193 iodotyrosine_dehalogenase Iodotyrosine dehalogenas 100.0
PRK05365195 malonic semialdehyde reductase; Provisional 100.0
cd02148185 Nitroreductase_5 Nitroreductase-like family 5. A s 100.0
cd02145196 BluB Subfamily of the nitroreductase family that i 100.0
PRK10828183 putative oxidoreductase; Provisional 100.0
cd02149157 NfsB_like_nitroreductase NAD(P)H:FMN oxidoreductas 100.0
TIGR02476205 BluB cob(II)yrinic acid a,c-diamide reductase. The 100.0
cd02138181 Nitroreductase_2 Nitroreductase-like family 2. A s 100.0
PRK11053217 dihydropteridine reductase; Provisional 100.0
PRK10765240 nitroreductase A; Provisional 100.0
cd02139164 Nitroreductase_3 Nitroreductase-like family 3. A s 100.0
cd02136178 Nitroreductase Nitroreductase family. Members of t 100.0
cd02146229 NfsA_FRP This family contains NADPH-dependent flav 100.0
cd02137148 Nitroreductase_1 Nitroreductase-like family 1. A s 100.0
TIGR03553194 F420_FbiB_CTERM F420 biosynthesis protein FbiB, C- 100.0
cd02150166 NADPH_oxidoreductase_1 NAD(P)H:flavin oxidoreducta 100.0
cd02151162 NADPH_oxidoreductase_2 NAD(P)H:flavin oxidoreducta 100.0
cd03370156 NADH_oxidase NADPH_oxidase. Nitroreductase family 100.0
cd02140192 Nitroreductase_4 Nitroreductase-like family 4. A s 100.0
cd02135160 Arsenite_oxidase Nitroreductase-like family which 100.0
PRK13294448 F420-0--gamma-glutamyl ligase; Provisional 100.0
PF00881165 Nitroreductase: Nitroreductase family; InterPro: I 99.97
cd02143147 NADH_nitroreductase Nitroreductase family. Members 99.97
COG0778207 NfnB Nitroreductase [Energy production and convers 99.96
cd02062122 Nitro_FMN_reductase Proteins of this family cataly 99.96
cd02142180 mcbC-like_oxidoreductase This family is the oxydas 99.83
TIGR03605173 antibiot_sagB SagB-type dehydrogenase domain. SagB 99.71
COG3560200 FMR2 Predicted oxidoreductase related to nitroredu 99.53
PF14512206 TM1586_NiRdase: Putative TM nitroreductase; PDB: 1 99.47
KOG3936|consensus100 99.45
PRK14851 679 hypothetical protein; Provisional 99.24
PRK07877722 hypothetical protein; Provisional 99.22
PRK07877 722 hypothetical protein; Provisional 99.03
PRK14851679 hypothetical protein; Provisional 98.69
PRK14852 989 hypothetical protein; Provisional 98.57
PRK14852989 hypothetical protein; Provisional 98.43
PF14512206 TM1586_NiRdase: Putative TM nitroreductase; PDB: 1 98.15
COG4739182 Uncharacterized protein containing a ferredoxin do 91.95
>cd02144 iodotyrosine_dehalogenase Iodotyrosine dehalogenase catalyzes the removal of iodine from the 3, 5 positions of L-tyosine in thyroid, liver and kidney, using NADPH as electron donor Back     alignment and domain information 
Probab=100.00  E-value=1.3e-40  Score=275.83  Aligned_cols=193  Identities=63%  Similarity=1.108  Sum_probs=153.9

Q ss_pred             HHHHHHhccccCCCCCCCCCHHHHHHHHHHhccCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHhhhhhhhhhhccccccc
Q psy144           58 FYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGKEWTTD  137 (254)
Q Consensus        58 ~~e~i~~RRSvR~F~~~~V~~e~i~~il~~A~~APS~~n~qpw~f~vv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  137 (254)
                      |+++|++|||+|+|++++||+|+|++||++|++|||++|+|||+|+||++++.+++|.+++.......+..++...|..+
T Consensus         1 ~~~~i~~RrSiR~f~~~~v~~e~l~~il~aa~~APS~~n~Qpw~~vvv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~   80 (193)
T cd02144           1 FYELMKRRRSVRKFSDEPVPREVIENCIRTAGTAPSGANTQPWTFVVVSDPELKHRIREIAEEEERINYEGRMGKEWVWD   80 (193)
T ss_pred             ChhHHhhceeccCCCCCCCCHHHHHHHHHHHHhCCCcCCCCCeEEEEeCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999988876544433433333334333


Q ss_pred             chhhhhhHHhhhhcCCCeEEEEEeecCCccccccccccchhhccHHHHHHHHHHHHHHcCCccccccCCCChHHHHhhcC
Q psy144          138 LRPLKTSWQKEYLTTAPYLVVVFKQTYGFKEEGKRKKHYYHEMSVSLACGIMLAAIQYCGLVTLTSTPLNAGPALRTLLD  217 (254)
Q Consensus       138 ~~~~~~~~~~~~~~~Ap~~ii~~~~~~~~~~~~~~~~~~~~~~~~g~a~~~l~Laa~a~Glgs~~~~~~~~~~~v~~~Lg  217 (254)
                      +......+.+.++.+||++++++.+.............++...|+|++++||+|+|+++||||||+++++..+.++++||
T Consensus        81 ~~~~~~~~~~~~~~~ap~~i~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~l~LaA~~~Glgs~~~~~~~~~~~v~~~l~  160 (193)
T cd02144          81 LKPLGTNWRKPYLDEAPYLILVFKQKYGGLPDGKKRTHYYNEESVSIACGLLLAALQNAGLGTVTTTPLNMGPFLRRLLG  160 (193)
T ss_pred             HhhhhhhhccchhhcCCEEEEEEeeccccCCccccccCCcchhhHHHHHHHHHHHHHHCCCceeecCCcchhHHHHHHhC
Confidence            32222234456788999999998876432222222234466789999999999999999999999998875589999999


Q ss_pred             CCCCceEEEEEeeccCCCCCCCCCCCCCCcccc
Q psy144          218 RPGNEKLALLLPIGYPALDCTVPNLKRKDIEDI  250 (254)
Q Consensus       218 lp~~~~~~~~l~vGyp~~~~~~p~~~Rkpl~ei  250 (254)
                      +|+++.+++++++|||+++...+..+|+|++|+
T Consensus       161 ip~~~~~~~~i~lGy~~~~~~~~~~~R~~~~e~  193 (193)
T cd02144         161 RPANEKLLMLLPVGYPDDDATVPDLKRKPLEEI  193 (193)
T ss_pred             CCCCCceEEEEEeecCCCCCCCCccCCCCcccC
Confidence            999999999999999998654455679999985

This enzyme is a homolog of the nitroreductase family. These enzymes are usually homodimers.
>PRK05365 malonic semialdehyde reductase; Provisional Back     alignment and domain information
>cd02148 Nitroreductase_5 Nitroreductase-like family 5 Back     alignment and domain information
>cd02145 BluB Subfamily of the nitroreductase family that includes BluB protein in Rhodobacter capsulatus is involved in the conversion of cobinamide to cobalamin in Cobalamin (vitamin B12) biosynthesis Back     alignment and domain information
>PRK10828 putative oxidoreductase; Provisional Back     alignment and domain information
>cd02149 NfsB_like_nitroreductase NAD(P)H:FMN oxidoreductase family Back     alignment and domain information
>TIGR02476 BluB cob(II)yrinic acid a,c-diamide reductase Back     alignment and domain information
>cd02138 Nitroreductase_2 Nitroreductase-like family 2 Back     alignment and domain information
>PRK11053 dihydropteridine reductase; Provisional Back     alignment and domain information
>PRK10765 nitroreductase A; Provisional Back     alignment and domain information
>cd02139 Nitroreductase_3 Nitroreductase-like family 3 Back     alignment and domain information
>cd02136 Nitroreductase Nitroreductase family Back     alignment and domain information
>cd02146 NfsA_FRP This family contains NADPH-dependent flavin reductase and oxygen-insensitive nitroreductase Back     alignment and domain information
>cd02137 Nitroreductase_1 Nitroreductase-like family 1 Back     alignment and domain information
>TIGR03553 F420_FbiB_CTERM F420 biosynthesis protein FbiB, C-terminal domain Back     alignment and domain information
>cd02150 NADPH_oxidoreductase_1 NAD(P)H:flavin oxidoreductase-like family 1 Back     alignment and domain information
>cd02151 NADPH_oxidoreductase_2 NAD(P)H:flavin oxidoreductase-like family 2 Back     alignment and domain information
>cd03370 NADH_oxidase NADPH_oxidase Back     alignment and domain information
>cd02140 Nitroreductase_4 Nitroreductase-like family 4 Back     alignment and domain information
>cd02135 Arsenite_oxidase Nitroreductase-like family which includes NADH oxidase and arsenite oxidiase Back     alignment and domain information
>PRK13294 F420-0--gamma-glutamyl ligase; Provisional Back     alignment and domain information
>PF00881 Nitroreductase: Nitroreductase family; InterPro: IPR000415 This entry represents a family of proteins consisting of nitroreductase enzymes and related oxidoreductases Back     alignment and domain information
>cd02143 NADH_nitroreductase Nitroreductase family Back     alignment and domain information
>COG0778 NfnB Nitroreductase [Energy production and conversion] Back     alignment and domain information
>cd02062 Nitro_FMN_reductase Proteins of this family catalyze the reduction of flavin or nitrocompounds using NAD(P)H as electron donor in a obligatory two-electron transfer, utilizing FMN or FAD as cofactor Back     alignment and domain information
>cd02142 mcbC-like_oxidoreductase This family is the oxydase domain of NRPS (non-ribosomal peptide synthetase) and other proteins that modify polypeptides by cyclizing a thioester to form a ring Back     alignment and domain information
>TIGR03605 antibiot_sagB SagB-type dehydrogenase domain Back     alignment and domain information
>COG3560 FMR2 Predicted oxidoreductase related to nitroreductase [General function prediction only] Back     alignment and domain information
>PF14512 TM1586_NiRdase: Putative TM nitroreductase; PDB: 1VKW_A Back     alignment and domain information
>KOG3936|consensus Back     alignment and domain information
>PRK14851 hypothetical protein; Provisional Back     alignment and domain information
>PRK07877 hypothetical protein; Provisional Back     alignment and domain information
>PRK07877 hypothetical protein; Provisional Back     alignment and domain information
>PRK14851 hypothetical protein; Provisional Back     alignment and domain information
>PRK14852 hypothetical protein; Provisional Back     alignment and domain information
>PRK14852 hypothetical protein; Provisional Back     alignment and domain information
>PF14512 TM1586_NiRdase: Putative TM nitroreductase; PDB: 1VKW_A Back     alignment and domain information
>COG4739 Uncharacterized protein containing a ferredoxin domain [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query254
3gb5_A259 Crystal Structure Of Mus Musculus Iodotyrosine Deio 2e-78
3tnz_A259 Crystal Structure Of Mus Musculus Iodotyrosine Deio 9e-71
4dn2_A208 Crystal Structure Of Putative Nitroreductase From G 1e-09
4g8s_A210 Crystal Structure Of A Putative Nitroreductase From 8e-09
3eo8_A219 Crystal Structure Of Blub-Like Flavoprotein (Yp_001 2e-08
3qdl_A210 Crystal Structure Of Rdxa From Helicobacter Pyroli 6e-06
3gag_A206 Crystal Structure Of A Nitroreductase-Like Protein 6e-06
2wzv_A235 Crystal Structure Of The Fmn-Dependent Nitroreducta 1e-05
3gr3_A230 Crystal Structure Of A Nitroreductase-Like Family P 1e-05
3g14_A193 Crystal Structure Of Nitroreductase Family Protein 5e-05
3gbh_A213 Crystal Structure Of A Putative Nad(P)h:fmn Oxidore 9e-05
4eo3_A322 Peroxiredoxin Nitroreductase Fusion Enzyme Length = 1e-04
3gfa_A198 Crystal Structure Of A Putative Nitroreductase In C 3e-04
3e10_A168 Crystal Structure Of Putative Nadh Oxidase (Np_3481 5e-04
3e39_A178 Crystal Structure Of A Putative Nitroreductase In C 5e-04
3ek3_A190 Crystal Structure Of Nitroreductase With Bound Fmn 5e-04
1nox_A205 Nadh Oxidase From Thermus Thermophilus Length = 205 7e-04
>pdb|3GB5|A Chain A, Crystal Structure Of Mus Musculus Iodotyrosine Deiodinase (Iyd) Bound To Fmn Length = 259 Back     alignment and structure 
Iteration: 1

 Score =  288 bits (736), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 137/237 (57%), Positives = 183/237 (77%)
Query: 16  SNAESETDEDDEFAPALPEALDHISYDFVKKSVEDIRQRSEEFYQLMNARRTVRFFSDEA 75
           S  + + +ED E      E+++HI +   +   +++R RS+EFY+L+N RR+VRF S E 
Sbjct: 15  STEDLQVEEDAEEWQEAEESVEHIPFSHTRYPEQEMRMRSQEFYELLNKRRSVRFISSEH 74
Query: 76  VPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGKEWT 135
           VP E+I N+IK AGT+PSGAHTEPWTFV+V+D DMK KIR+I+E EE INY KRMGK W 
Sbjct: 75  VPMEVIENVIKAAGTAPSGAHTEPWTFVVVKDPDMKHKIREIIEEEEEINYMKRMGKRWV 134
Query: 136 TDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKEEGKRKKHYYHEMSVSLACGIMLAAIQY 195
           TDL+ L+T+W KEYL TAP L+++FKQ +GF   GK+K HYY+E+SVS+ACG++LAA+Q 
Sbjct: 135 TDLKKLRTNWIKEYLDTAPVLILIFKQVHGFAANGKKKVHYYNEISVSIACGLLLAALQN 194
Query: 196 CGLVTLTSTPLNAGPALRTLLDRPGNEKLALLLPIGYPALDCTVPNLKRKDIEDIIV 252
            GLVT+T+TPLN GP LR LL RP +EKL +LLP+GYP+ D TVP+LKRK ++ I+V
Sbjct: 195 AGLVTVTTTPLNCGPRLRVLLGRPSHEKLLVLLPVGYPSRDATVPDLKRKALDQIMV 251
>pdb|3TNZ|A Chain A, Crystal Structure Of Mus Musculus Iodotyrosine Deiodinase (Iyd) C217a, C239a Bound To Fmn And Mono-Iodotyrosine (Mit) Length = 259 Back     alignment and structure
>pdb|4DN2|A Chain A, Crystal Structure Of Putative Nitroreductase From Geobacter Metallireducens Gs-15 Length = 208 Back     alignment and structure
>pdb|4G8S|A Chain A, Crystal Structure Of A Putative Nitroreductase From Geobacter Sulfurreducens Pca (Target Psi-013445) Length = 210 Back     alignment and structure
>pdb|3EO8|A Chain A, Crystal Structure Of Blub-Like Flavoprotein (Yp_001089088.1) From Clostridium Difficile 630 At 1.74 A Resolution Length = 219 Back     alignment and structure
>pdb|3QDL|A Chain A, Crystal Structure Of Rdxa From Helicobacter Pyroli Length = 210 Back     alignment and structure
>pdb|3GAG|A Chain A, Crystal Structure Of A Nitroreductase-Like Protein (Smu.346) From Streptococcus Mutans At 1.70 A Resolution Length = 206 Back     alignment and structure
>pdb|2WZV|A Chain A, Crystal Structure Of The Fmn-Dependent Nitroreductase Nfnb From Mycobacterium Smegmatis Length = 235 Back     alignment and structure
>pdb|3GR3|A Chain A, Crystal Structure Of A Nitroreductase-Like Family Protein (Pnba, Bh06130) From Bartonella Henselae Str. Houston-1 At 1.45 A Resolution Length = 230 Back     alignment and structure
>pdb|3G14|A Chain A, Crystal Structure Of Nitroreductase Family Protein (Yp_877874.1) From Clostridium Novyi Nt At 1.75 A Resolution Length = 193 Back     alignment and structure
>pdb|3GBH|A Chain A, Crystal Structure Of A Putative Nad(P)h:fmn Oxidoreductase (Se1966) From Staphylococcus Epidermidis Atcc 12228 At 2.00 A Resolution Length = 213 Back     alignment and structure
>pdb|4EO3|A Chain A, Peroxiredoxin Nitroreductase Fusion Enzyme Length = 322 Back     alignment and structure
>pdb|3GFA|A Chain A, Crystal Structure Of A Putative Nitroreductase In Complex With Fmn (Cd3205) From Clostridium Difficile 630 At 1.35 A Resolution Length = 198 Back     alignment and structure
>pdb|3E10|A Chain A, Crystal Structure Of Putative Nadh Oxidase (Np_348178.1) From Clostridium Acetobutylicum At 1.40 A Resolution Length = 168 Back     alignment and structure
>pdb|3E39|A Chain A, Crystal Structure Of A Putative Nitroreductase In Complex With Fmn (Dde_0787) From Desulfovibrio Desulfuricans Subsp. At 1.70 A Resolution Length = 178 Back     alignment and structure
>pdb|3EK3|A Chain A, Crystal Structure Of Nitroreductase With Bound Fmn (yp_211706.1) From Bacteroides Fragilis Nctc 9343 At 1.70 A Resolution Length = 190 Back     alignment and structure
>pdb|1NOX|A Chain A, Nadh Oxidase From Thermus Thermophilus Length = 205 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query254
3gb5_A259 IYD-1, iodotyrosine dehalogenase 1; iodide salvage 2e-91
3eo8_A219 BLUB-like flavoprotein; YP_001089088.1, structural 9e-56
4dn2_A208 Nitroreductase; structural genomics, protein struc 3e-49
3gr3_A230 Nitroreductase; structural genomics, joint center 5e-44
3ek3_A190 Nitroreductase; YP_211706.1, structural genom join 3e-40
2isk_A230 BLUB; oxidoreductase, flavin, monooxygenase, flavi 7e-37
3gfa_A198 Putative nitroreductase; structural genomics, join 9e-34
3ge5_A198 Putative NAD(P)H:FMN oxidoreductase; structural ge 2e-31
3g14_A193 Nitroreductase family protein; structural genom jo 8e-31
3gag_A206 Putative NADH dehydrogenase, NADPH nitroreductase; 1e-30
2wzv_A235 NFNB protein; nitroreductase, oxidoreductase; HET: 2e-30
3pxv_A189 Nitroreductase; flavoprotein, FMN-dependent, joint 6e-30
2b67_A204 COG0778: nitroreductase; alpha-beta sandwich, FMN 2e-28
2i7h_A189 Nitroreductase-like family protein; alpha-beta, st 8e-28
2r01_A210 Nitroreductase family protein; structural genomics 6e-27
3e39_A178 Putative nitroreductase; structural genomics, join 3e-26
3h4o_A191 Nitroreductase family protein; structural genomics 5e-26
3e10_A168 Putative NADH oxidase; NP_348178.1, structural gen 6e-26
2fre_A200 NAD(P)H-flavin oxidoreductase; FMN, structural gen 2e-25
3of4_A209 Nitroreductase; structural genomics, joint center 7e-25
3m5k_A172 Putative NADH dehydrogenase/NAD(P)H nitroreductas; 1e-24
3bem_A218 Putative NAD(P)H nitroreductase YDFN; 2632848, put 2e-24
3kwk_A175 Putative NADH dehydrogenase/NAD(P)H nitroreductas; 3e-24
3bm1_A183 Protein YDJA, nitroreductase; oxidoreductase; HET: 4e-24
3qdl_A210 Oxygen-insensitive NADPH nitroreductase; oxidoredu 6e-24
1ywq_A200 Nitroreductase family protein; FMN, structu genomi 6e-24
1f5v_A240 Oxygen-insensitive NADPH nitroreductase; flavoprot 2e-23
3gbh_A213 NAD(P)H-flavin oxidoreductase; putative NAD(P)H:FM 6e-23
1nox_A205 NADH oxidase; flavoenzyme, flavoprotein FMN, oxido 9e-23
1bkj_A240 NADPH-flavin oxidoreductase; luminescence, flavopr 2e-22
2hay_A224 Putative NAD(P)H-flavin oxidoreductase; alpha-beta 2e-22
1zch_A255 Hypothetical oxidoreductase YCND; nitroreductase, 2e-22
3n2s_A249 NADPH-dependent nitro/flavin reductase; alpga-beta 2e-22
3eof_A248 Putative oxidoreductase; YP_213212.1, structural g 1e-21
3k6h_A197 Nitroreductase family protein; APC5990, agrobacter 1e-21
1icr_A217 Oxygen-insensitive NAD(P)H nitroreductase; alpha-b 2e-20
1vfr_A218 NAD(P)H\:FMN oxidoreductase; bioluminescence; HET: 1e-19
3ge6_A212 Nitroreductase; structural GENO joint center for s 2e-19
2h0u_A217 NADPH-flavin oxidoreductase; structur genomics, PS 2e-19
3hoi_A193 FMN-dependent nitroreductase BF3017; YP_212631.1, 2e-10
2ifa_A208 Hypothetical protein SMU.260; alpha-beta protein, 2e-10
3hj9_A223 Oxidoreductase; structural genomics, joint center 2e-09
2wqf_A202 Copper induced nitroreductase D; COPR regulated pr 7e-07
3eo7_A511 Putative nitroreductase; structural genomics, join 4e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-04
>3gb5_A IYD-1, iodotyrosine dehalogenase 1; iodide salvage, flavoprotein, FMN, membrane, NADP, oxidoreductase, transmembrane; HET: FMN; 2.00A {Mus musculus} PDB: 3gfd_A* 3gh8_A* 3tnz_A* 3to0_A* Length = 259 Back     alignment and structure
 Score =  269 bits (689), Expect = 2e-91
 Identities = 137/238 (57%), Positives = 183/238 (76%)

Query: 16  SNAESETDEDDEFAPALPEALDHISYDFVKKSVEDIRQRSEEFYQLMNARRTVRFFSDEA 75
           S  + + +ED E      E+++HI +   +   +++R RS+EFY+L+N RR+VRF S E 
Sbjct: 15  STEDLQVEEDAEEWQEAEESVEHIPFSHTRYPEQEMRMRSQEFYELLNKRRSVRFISSEH 74

Query: 76  VPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGKEWT 135
           VP E+I N+IK AGT+PSGAHTEPWTFV+V+D DMK KIR+I+E EE INY KRMGK W 
Sbjct: 75  VPMEVIENVIKAAGTAPSGAHTEPWTFVVVKDPDMKHKIREIIEEEEEINYMKRMGKRWV 134

Query: 136 TDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKEEGKRKKHYYHEMSVSLACGIMLAAIQY 195
           TDL+ L+T+W KEYL TAP L+++FKQ +GF   GK+K HYY+E+SVS+ACG++LAA+Q 
Sbjct: 135 TDLKKLRTNWIKEYLDTAPVLILIFKQVHGFAANGKKKVHYYNEISVSIACGLLLAALQN 194

Query: 196 CGLVTLTSTPLNAGPALRTLLDRPGNEKLALLLPIGYPALDCTVPNLKRKDIEDIIVE 253
            GLVT+T+TPLN GP LR LL RP +EKL +LLP+GYP+ D TVP+LKRK ++ I+V 
Sbjct: 195 AGLVTVTTTPLNCGPRLRVLLGRPSHEKLLVLLPVGYPSRDATVPDLKRKALDQIMVT 252
>3eo8_A BLUB-like flavoprotein; YP_001089088.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: FMN; 1.74A {Clostridium difficile 630} Length = 219 Back     alignment and structure
>4dn2_A Nitroreductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgrc; HET: FMN; 1.50A {Geobacter metallireducens} PDB: 4g8s_A* Length = 208 Back     alignment and structure
>3gr3_A Nitroreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, flavoprotein; HET: MSE FMN UNL; 1.45A {Bartonella henselae str} Length = 230 Back     alignment and structure
>3ek3_A Nitroreductase; YP_211706.1, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: FMN MPD; 1.70A {Bacteroides fragilis nctc 9343} Length = 190 Back     alignment and structure
>2isk_A BLUB; oxidoreductase, flavin, monooxygenase, flavin destructase, vitamin B12, dithionite, charge transfer complex, flavoprotein; HET: FNR; 2.10A {Sinorhizobium meliloti} PDB: 2isj_A* 2isl_A* Length = 230 Back     alignment and structure
>3gfa_A Putative nitroreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE FMN GOL; 1.35A {Clostridium difficile 630} Length = 198 Back     alignment and structure
>3ge5_A Putative NAD(P)H:FMN oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: FMN UNL; 1.70A {Porphyromonas gingivalis W83} Length = 198 Back     alignment and structure
>3g14_A Nitroreductase family protein; structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI-2, oxidoreductase; HET: MSE; 1.75A {Clostridium novyi} Length = 193 Back     alignment and structure
>3gag_A Putative NADH dehydrogenase, NADPH nitroreductase; FMN-dependent nitroreductase-like fold, structural genomics; HET: MSE FMN; 1.70A {Streptococcus mutans} Length = 206 Back     alignment and structure
>2wzv_A NFNB protein; nitroreductase, oxidoreductase; HET: MSE FMN; 1.75A {Mycobacterium smegmatis} PDB: 2wzw_A* Length = 235 Back     alignment and structure
>3pxv_A Nitroreductase; flavoprotein, FMN-dependent, joint center for structural genomics, protein structure initiative, PSI-biology; HET: MSE FMN; 2.30A {Desulfitobacterium hafniense} Length = 189 Back     alignment and structure
>2b67_A COG0778: nitroreductase; alpha-beta sandwich, FMN binding pocket, structural genomics protein structure initiative; HET: MSE FMN; 2.05A {Streptococcus pneumoniae} SCOP: d.90.1.1 Length = 204 Back     alignment and structure
>2i7h_A Nitroreductase-like family protein; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE FMN; 2.30A {Bacillus cereus} Length = 189 Back     alignment and structure
>2r01_A Nitroreductase family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE FMN; 1.15A {Chlorobium tepidum tls} Length = 210 Back     alignment and structure
>3e39_A Putative nitroreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE FMN PGE; 1.70A {Desulfovibrio desulfuricans subsp} Length = 178 Back     alignment and structure
>3h4o_A Nitroreductase family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE FMN; 1.50A {Clostridium difficile 630} PDB: 3koq_A* Length = 191 Back     alignment and structure
>3e10_A Putative NADH oxidase; NP_348178.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE FMN EPE; 1.40A {Clostridium acetobutylicum} Length = 168 Back     alignment and structure
>2fre_A NAD(P)H-flavin oxidoreductase; FMN, structural genomics, PSI, protein struc initiative, midwest center for structural genomics; HET: FMN; 1.90A {Agrobacterium tumefaciens str} SCOP: d.90.1.1 Length = 200 Back     alignment and structure
>3of4_A Nitroreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, oxidoreductase; HET: FMN UNL FAD; 1.90A {Idiomarina loihiensis} Length = 209 Back     alignment and structure
>3m5k_A Putative NADH dehydrogenase/NAD(P)H nitroreductas; structural genomics, joint center for structural genomics; HET: MSE FMN; 1.86A {Parabacteroides distasonis} Length = 172 Back     alignment and structure
>3bem_A Putative NAD(P)H nitroreductase YDFN; 2632848, putative nitroreductase YDFN, structural genomics, center for structural genomics, JCSG; HET: MSE FMN; 1.65A {Bacillus subtilis} Length = 218 Back     alignment and structure
>3kwk_A Putative NADH dehydrogenase/NAD(P)H nitroreductas; structur genomics, joint center for structural genomics, JCSG; HET: MSE FMN; 1.54A {Bacteroides thetaiotaomicron vpi-5482} Length = 175 Back     alignment and structure
>3bm1_A Protein YDJA, nitroreductase; oxidoreductase; HET: FMN; 2.00A {Escherichia coli} PDB: 3bm2_A Length = 183 Back     alignment and structure
>3qdl_A Oxygen-insensitive NADPH nitroreductase; oxidoreductase; HET: FMN; 2.00A {Helicobacter pylori} Length = 210 Back     alignment and structure
>1ywq_A Nitroreductase family protein; FMN, structu genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; HET: FMN; 2.30A {Bacillus cereus atcc 14579} SCOP: d.90.1.1 Length = 200 Back     alignment and structure
>1f5v_A Oxygen-insensitive NADPH nitroreductase; flavoprotein, oxidoreduction, nitrocompound, oxidoreductase; HET: FMN; 1.70A {Escherichia coli} SCOP: d.90.1.1 Length = 240 Back     alignment and structure
>3gbh_A NAD(P)H-flavin oxidoreductase; putative NAD(P)H:FMN oxidoreductase, structural genomics, JO center for structural genomics; HET: MSE FMN PGE; 2.00A {Staphylococcus epidermidis atcc 12228} Length = 213 Back     alignment and structure
>1nox_A NADH oxidase; flavoenzyme, flavoprotein FMN, oxidoreductase, thermophIle; HET: FMN; 1.59A {Thermus thermophilus} SCOP: d.90.1.1 Length = 205 Back     alignment and structure
>1bkj_A NADPH-flavin oxidoreductase; luminescence, flavoprotein; HET: FMN; 1.80A {Vibrio harveyi} SCOP: d.90.1.1 PDB: 2bkj_A* Length = 240 Back     alignment and structure
>2hay_A Putative NAD(P)H-flavin oxidoreductase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE FMN; 2.11A {Streptococcus pyogenes serotype M1} Length = 224 Back     alignment and structure
>1zch_A Hypothetical oxidoreductase YCND; nitroreductase, NADH-oxidase; HET: FMN; 1.85A {Bacillus subtilis} SCOP: d.90.1.1 Length = 255 Back     alignment and structure
>3n2s_A NADPH-dependent nitro/flavin reductase; alpga-beta-alpha sandwich, oxidoreductase; HET: FMN; 1.95A {Bacillus subtilis} Length = 249 Back     alignment and structure
>3eof_A Putative oxidoreductase; YP_213212.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: FMN; 1.99A {Bacteroides fragilis nctc 9343} Length = 248 Back     alignment and structure
>3k6h_A Nitroreductase family protein; APC5990, agrobacterium tumefaciens ST structural genomics, PSI-2, protein structure initiative; HET: FMN; 3.05A {Agrobacterium tumefaciens str} Length = 197 Back     alignment and structure
>1icr_A Oxygen-insensitive NAD(P)H nitroreductase; alpha-beta, oxidoreductase; HET: FMN; 1.70A {Escherichia coli} SCOP: d.90.1.1 PDB: 1ds7_A* 1icu_A* 1icv_A* 1idt_A* 1oo5_A* 1oo6_A* 1oon_A* 1ooq_A* 1yki_A* 1ylr_A* 1ylu_A* 3hzn_A* 1kqb_A* 1kqc_A* 1kqd_A* 1nec_A* Length = 217 Back     alignment and structure
>1vfr_A NAD(P)H\:FMN oxidoreductase; bioluminescence; HET: FMN; 1.80A {Aliivibrio fischeri} SCOP: d.90.1.1 PDB: 1v5y_A* 1v5z_A* Length = 218 Back     alignment and structure
>3ge6_A Nitroreductase; structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2, oxidoreductase; HET: FMN; 1.85A {Exiguobacterium sibiricum 255-15} Length = 212 Back     alignment and structure
>2h0u_A NADPH-flavin oxidoreductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: FMN; 1.90A {Helicobacter pylori} Length = 217 Back     alignment and structure
>3hoi_A FMN-dependent nitroreductase BF3017; YP_212631.1, structural genomics, joint center for S genomics, JCSG; HET: MSE FMN FLC; 1.55A {Bacteroides fragilis nctc 9343} Length = 193 Back     alignment and structure
>2ifa_A Hypothetical protein SMU.260; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: FMN; 2.30A {Streptococcus mutans} SCOP: d.90.1.1 Length = 208 Back     alignment and structure
>3hj9_A Oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE FMN; 2.00A {Ralstonia eutropha} Length = 223 Back     alignment and structure
>2wqf_A Copper induced nitroreductase D; COPR regulated protein, oxidoreductase; HET: FMN; 1.35A {Lactococcus lactis} Length = 202 Back     alignment and structure
>3eo7_A Putative nitroreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE FMN; 1.80A {Anabaena variabilis atcc 29413} Length = 511 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query254
3gb5_A259 IYD-1, iodotyrosine dehalogenase 1; iodide salvage 100.0
3ge5_A198 Putative NAD(P)H:FMN oxidoreductase; structural ge 100.0
3of4_A209 Nitroreductase; structural genomics, joint center 100.0
4eo3_A322 Bacterioferritin comigratory protein/NADH dehydro; 100.0
3gag_A206 Putative NADH dehydrogenase, NADPH nitroreductase; 100.0
3ge6_A212 Nitroreductase; structural GENO joint center for s 100.0
3g14_A193 Nitroreductase family protein; structural genom jo 100.0
3gbh_A213 NAD(P)H-flavin oxidoreductase; putative NAD(P)H:FM 100.0
3eo8_A219 BLUB-like flavoprotein; YP_001089088.1, structural 100.0
3h4o_A191 Nitroreductase family protein; structural genomics 100.0
3k6h_A197 Nitroreductase family protein; APC5990, agrobacter 100.0
4dn2_A208 Nitroreductase; structural genomics, protein struc 100.0
3qdl_A210 Oxygen-insensitive NADPH nitroreductase; oxidoredu 100.0
3gr3_A230 Nitroreductase; structural genomics, joint center 100.0
1nox_A205 NADH oxidase; flavoenzyme, flavoprotein FMN, oxido 100.0
3m5k_A172 Putative NADH dehydrogenase/NAD(P)H nitroreductas; 100.0
2b67_A204 COG0778: nitroreductase; alpha-beta sandwich, FMN 100.0
3e39_A178 Putative nitroreductase; structural genomics, join 100.0
3bem_A218 Putative NAD(P)H nitroreductase YDFN; 2632848, put 100.0
3kwk_A175 Putative NADH dehydrogenase/NAD(P)H nitroreductas; 100.0
2fre_A200 NAD(P)H-flavin oxidoreductase; FMN, structural gen 100.0
3ek3_A190 Nitroreductase; YP_211706.1, structural genom join 100.0
3gfa_A198 Putative nitroreductase; structural genomics, join 100.0
3pxv_A189 Nitroreductase; flavoprotein, FMN-dependent, joint 100.0
3n2s_A249 NADPH-dependent nitro/flavin reductase; alpga-beta 100.0
2i7h_A189 Nitroreductase-like family protein; alpha-beta, st 100.0
1vfr_A218 NAD(P)H\:FMN oxidoreductase; bioluminescence; HET: 100.0
2h0u_A217 NADPH-flavin oxidoreductase; structur genomics, PS 100.0
2hay_A224 Putative NAD(P)H-flavin oxidoreductase; alpha-beta 100.0
3bm1_A183 Protein YDJA, nitroreductase; oxidoreductase; HET: 100.0
3e10_A168 Putative NADH oxidase; NP_348178.1, structural gen 100.0
3eof_A248 Putative oxidoreductase; YP_213212.1, structural g 100.0
2isk_A230 BLUB; oxidoreductase, flavin, monooxygenase, flavi 100.0
1icr_A217 Oxygen-insensitive NAD(P)H nitroreductase; alpha-b 100.0
2wzv_A235 NFNB protein; nitroreductase, oxidoreductase; HET: 100.0
1zch_A255 Hypothetical oxidoreductase YCND; nitroreductase, 100.0
1f5v_A240 Oxygen-insensitive NADPH nitroreductase; flavoprot 100.0
1bkj_A240 NADPH-flavin oxidoreductase; luminescence, flavopr 100.0
2ifa_A208 Hypothetical protein SMU.260; alpha-beta protein, 100.0
1ywq_A200 Nitroreductase family protein; FMN, structu genomi 100.0
2wqf_A202 Copper induced nitroreductase D; COPR regulated pr 100.0
2r01_A210 Nitroreductase family protein; structural genomics 100.0
3hoi_A193 FMN-dependent nitroreductase BF3017; YP_212631.1, 100.0
3hj9_A223 Oxidoreductase; structural genomics, joint center 100.0
3eo7_A511 Putative nitroreductase; structural genomics, join 99.96
1vkw_A218 Putative nitroreductase; structural genomics, join 99.86
3eo7_A 511 Putative nitroreductase; structural genomics, join 99.84
2ymv_A330 ACG nitroreductase; oxidoreductase, dormancy, redu 99.81
2ymv_A 330 ACG nitroreductase; oxidoreductase, dormancy, redu 99.35
1vkw_A218 Putative nitroreductase; structural genomics, join 99.28
>3gb5_A IYD-1, iodotyrosine dehalogenase 1; iodide salvage, flavoprotein, FMN, membrane, NADP, oxidoreductase, transmembrane; HET: FMN; 2.00A {Mus musculus} PDB: 3gfd_A* 3gh8_A* 3tnz_A* 3to0_A* Back     alignment and structure
Probab=100.00  E-value=3.2e-50  Score=346.75  Aligned_cols=232  Identities=59%  Similarity=1.024  Sum_probs=170.7

Q ss_pred             CcccCCCCCCCCCCCCCccCCCccCchhHhhhcHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHhccCCCCCCCCCeE
Q psy144           22 TDEDDEFAPALPEALDHISYDFVKKSVEDIRQRSEEFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWT  101 (254)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~i~~RRSvR~F~~~~V~~e~i~~il~~A~~APS~~n~qpw~  101 (254)
                      .+++.++|++.+++++|+||...++++.++...+|+|+++|++|||+|+|++++|+.++|++||++|++|||++|+|||+
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~i~~RRSvR~f~~~~v~~e~l~~il~aa~~APS~~n~Qpw~  100 (259)
T 3gb5_A           21 VEEDAEEWQEAEESVEHIPFSHTRYPEQEMRMRSQEFYELLNKRRSVRFISSEHVPMEVIENVIKAAGTAPSGAHTEPWT  100 (259)
T ss_dssp             ---------------CCCCCCCCCCCHHHHHHHHHHHHHHHHTCCCCSCBCCCCCCHHHHHHHHHHHTTSCCGGGCCCEE
T ss_pred             cccccccccCCccccCcccccCCCCChhhhhhhhHHHHHHHHHCcchhhcCCCCCCHHHHHHHHHHHHHCCCcCCCCCeE
Confidence            34556799999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCHHHHHHHHHHHHHhhhhhhhhhhcccccccchhhhhhHHhhhhcCCCeEEEEEeecCCccccccccccchhhcc
Q psy144          102 FVIVEDKDMKAKIRDIVESEERINYDKRMGKEWTTDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKEEGKRKKHYYHEMS  181 (254)
Q Consensus       102 f~vv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ap~~ii~~~~~~~~~~~~~~~~~~~~~~~  181 (254)
                      |+||++++.+++|.+++.....++|..+++..|..++.++..+|.+.++.+||++|+++++..+...++......|..+|
T Consensus       101 fivv~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~AP~lIvv~~~~~~~~~~g~~~~~~~~~~d  180 (259)
T 3gb5_A          101 FVVVKDPDMKHKIREIIEEEEEINYMKRMGKRWVTDLKKLRTNWIKEYLDTAPVLILIFKQVHGFAANGKKKVHYYNEIS  180 (259)
T ss_dssp             EEEECCHHHHHHHHHHHHHTCCC----------------------CTHHHHSSEEEEEEEEC-------------CHHHH
T ss_pred             EEEEeCHHHHHHHHHHHHhhhhhhhhhhcchhhHHHHHHHHHHHhhHHhcCCCEEEEEEEecccccccCcccchhHHHHH
Confidence            99999999999999988665545566667777877777766667778889999999999886543333333334567889


Q ss_pred             HHHHHHHHHHHHHHcCCccccccCCCChHHHHhhcCCCCCceEEEEEeeccCCCCCCCCCCCCCCcccceEe
Q psy144          182 VSLACGIMLAAIQYCGLVTLTSTPLNAGPALRTLLDRPGNEKLALLLPIGYPALDCTVPNLKRKDIEDIIVE  253 (254)
Q Consensus       182 ~g~a~~~l~Laa~a~Glgs~~~~~~~~~~~v~~~Lglp~~~~~~~~l~vGyp~~~~~~p~~~Rkpl~ei~~~  253 (254)
                      +|+|+|||+|+|+++||||||+++++..+.++++||+|+++.++++|+||||++....|..+|||++|+++-
T Consensus       181 agiA~~nllLAA~alGLGs~~~g~~~~~~~vr~~LglPe~~~~v~~iaiGyp~e~~~~p~~~Rkpleei~~~  252 (259)
T 3gb5_A          181 VSIACGLLLAALQNAGLVTVTTTPLNCGPRLRVLLGRPSHEKLLVLLPVGYPSRDATVPDLKRKALDQIMVT  252 (259)
T ss_dssp             HHHHHHHHHHHHHHTTCBCCCBCCGGGHHHHHHHTTCCTTEEEEEEEEEBCBCTTCCCCCCCCCCGGGTCCC
T ss_pred             HHHHHHHHHHHHHHCCCeEEEecCcCcHHHHHHhcCcCCCCEEEEEEEecCcCCCCCCCCCCCCCHHHHHHH
Confidence            999999999999999999999999876689999999999999999999999999887787899999999864
>3ge5_A Putative NAD(P)H:FMN oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: FMN UNL; 1.70A {Porphyromonas gingivalis W83} Back     alignment and structure
>3of4_A Nitroreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, oxidoreductase; HET: FMN UNL FAD; 1.90A {Idiomarina loihiensis} SCOP: d.90.1.0 Back     alignment and structure
>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima} Back     alignment and structure
>3gag_A Putative NADH dehydrogenase, NADPH nitroreductase; FMN-dependent nitroreductase-like fold, structural genomics; HET: MSE FMN; 1.70A {Streptococcus mutans} SCOP: d.90.1.0 Back     alignment and structure
>3ge6_A Nitroreductase; structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2, oxidoreductase; HET: FMN; 1.85A {Exiguobacterium sibiricum 255-15} SCOP: d.90.1.0 Back     alignment and structure
>3g14_A Nitroreductase family protein; structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI-2, oxidoreductase; HET: MSE; 1.75A {Clostridium novyi} Back     alignment and structure
>3gbh_A NAD(P)H-flavin oxidoreductase; putative NAD(P)H:FMN oxidoreductase, structural genomics, JO center for structural genomics; HET: MSE FMN PGE; 2.00A {Staphylococcus epidermidis atcc 12228} SCOP: d.90.1.0 Back     alignment and structure
>3eo8_A BLUB-like flavoprotein; YP_001089088.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: FMN; 1.74A {Clostridium difficile 630} Back     alignment and structure
>3h4o_A Nitroreductase family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE FMN; 1.50A {Clostridium difficile 630} PDB: 3koq_A* Back     alignment and structure
>3k6h_A Nitroreductase family protein; APC5990, agrobacterium tumefaciens ST structural genomics, PSI-2, protein structure initiative; HET: FMN; 3.05A {Agrobacterium tumefaciens str} Back     alignment and structure
>4dn2_A Nitroreductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgrc; HET: FMN; 1.50A {Geobacter metallireducens} PDB: 4g8s_A* Back     alignment and structure
>3qdl_A Oxygen-insensitive NADPH nitroreductase; oxidoreductase; HET: FMN; 2.00A {Helicobacter pylori} Back     alignment and structure
>3gr3_A Nitroreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, flavoprotein; HET: MSE FMN UNL; 1.45A {Bartonella henselae str} Back     alignment and structure
>1nox_A NADH oxidase; flavoenzyme, flavoprotein FMN, oxidoreductase, thermophIle; HET: FMN; 1.59A {Thermus thermophilus} SCOP: d.90.1.1 Back     alignment and structure
>3m5k_A Putative NADH dehydrogenase/NAD(P)H nitroreductas; structural genomics, joint center for structural genomics; HET: MSE FMN; 1.86A {Parabacteroides distasonis} Back     alignment and structure
>2b67_A COG0778: nitroreductase; alpha-beta sandwich, FMN binding pocket, structural genomics protein structure initiative; HET: MSE FMN; 2.05A {Streptococcus pneumoniae} SCOP: d.90.1.1 Back     alignment and structure
>3e39_A Putative nitroreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE FMN PGE; 1.70A {Desulfovibrio desulfuricans subsp} Back     alignment and structure
>3bem_A Putative NAD(P)H nitroreductase YDFN; 2632848, putative nitroreductase YDFN, structural genomics, center for structural genomics, JCSG; HET: MSE FMN; 1.65A {Bacillus subtilis} Back     alignment and structure
>3kwk_A Putative NADH dehydrogenase/NAD(P)H nitroreductas; structur genomics, joint center for structural genomics, JCSG; HET: MSE FMN; 1.54A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>2fre_A NAD(P)H-flavin oxidoreductase; FMN, structural genomics, PSI, protein struc initiative, midwest center for structural genomics; HET: FMN; 1.90A {Agrobacterium tumefaciens str} SCOP: d.90.1.1 Back     alignment and structure
>3ek3_A Nitroreductase; YP_211706.1, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: FMN MPD; 1.70A {Bacteroides fragilis nctc 9343} Back     alignment and structure
>3gfa_A Putative nitroreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE FMN GOL; 1.35A {Clostridium difficile 630} Back     alignment and structure
>3pxv_A Nitroreductase; flavoprotein, FMN-dependent, joint center for structural genomics, protein structure initiative, PSI-biology; HET: MSE FMN; 2.30A {Desulfitobacterium hafniense} Back     alignment and structure
>3n2s_A NADPH-dependent nitro/flavin reductase; alpga-beta-alpha sandwich, oxidoreductase; HET: FMN; 1.95A {Bacillus subtilis} SCOP: d.90.1.0 Back     alignment and structure
>2i7h_A Nitroreductase-like family protein; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE FMN; 2.30A {Bacillus cereus} Back     alignment and structure
>1vfr_A NAD(P)H\:FMN oxidoreductase; bioluminescence; HET: FMN; 1.80A {Aliivibrio fischeri} SCOP: d.90.1.1 PDB: 1v5y_A* 1v5z_A* Back     alignment and structure
>2h0u_A NADPH-flavin oxidoreductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: FMN; 1.90A {Helicobacter pylori} Back     alignment and structure
>2hay_A Putative NAD(P)H-flavin oxidoreductase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE FMN; 2.11A {Streptococcus pyogenes serotype M1} Back     alignment and structure
>3bm1_A Protein YDJA, nitroreductase; oxidoreductase; HET: FMN; 2.00A {Escherichia coli} PDB: 3bm2_A Back     alignment and structure
>3e10_A Putative NADH oxidase; NP_348178.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE FMN EPE; 1.40A {Clostridium acetobutylicum} Back     alignment and structure
>3eof_A Putative oxidoreductase; YP_213212.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: FMN; 1.99A {Bacteroides fragilis nctc 9343} SCOP: d.90.1.0 Back     alignment and structure
>2isk_A BLUB; oxidoreductase, flavin, monooxygenase, flavin destructase, vitamin B12, dithionite, charge transfer complex, flavoprotein; HET: FNR; 2.10A {Sinorhizobium meliloti} PDB: 2isj_A* 2isl_A* Back     alignment and structure
>1icr_A Oxygen-insensitive NAD(P)H nitroreductase; alpha-beta, oxidoreductase; HET: FMN; 1.70A {Escherichia coli} SCOP: d.90.1.1 PDB: 1ds7_A* 1icu_A* 1icv_A* 1idt_A* 1oo5_A* 1oo6_A* 1oon_A* 1ooq_A* 1yki_A* 1ylr_A* 1ylu_A* 3hzn_A* 1kqb_A* 1kqc_A* 1kqd_A* 1nec_A* Back     alignment and structure
>2wzv_A NFNB protein; nitroreductase, oxidoreductase; HET: MSE FMN; 1.75A {Mycobacterium smegmatis} PDB: 2wzw_A* Back     alignment and structure
>1zch_A Hypothetical oxidoreductase YCND; nitroreductase, NADH-oxidase; HET: FMN; 1.85A {Bacillus subtilis} SCOP: d.90.1.1 Back     alignment and structure
>1f5v_A Oxygen-insensitive NADPH nitroreductase; flavoprotein, oxidoreduction, nitrocompound, oxidoreductase; HET: FMN; 1.70A {Escherichia coli} SCOP: d.90.1.1 Back     alignment and structure
>1bkj_A NADPH-flavin oxidoreductase; luminescence, flavoprotein; HET: FMN; 1.80A {Vibrio harveyi} SCOP: d.90.1.1 PDB: 2bkj_A* Back     alignment and structure
>2ifa_A Hypothetical protein SMU.260; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: FMN; 2.30A {Streptococcus mutans} SCOP: d.90.1.1 Back     alignment and structure
>1ywq_A Nitroreductase family protein; FMN, structu genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; HET: FMN; 2.30A {Bacillus cereus atcc 14579} SCOP: d.90.1.1 Back     alignment and structure
>2wqf_A Copper induced nitroreductase D; COPR regulated protein, oxidoreductase; HET: FMN; 1.35A {Lactococcus lactis} Back     alignment and structure
>2r01_A Nitroreductase family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE FMN; 1.15A {Chlorobium tepidum tls} Back     alignment and structure
>3hoi_A FMN-dependent nitroreductase BF3017; YP_212631.1, structural genomics, joint center for S genomics, JCSG; HET: MSE FMN FLC; 1.55A {Bacteroides fragilis nctc 9343} Back     alignment and structure
>3hj9_A Oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE FMN; 2.00A {Ralstonia eutropha} Back     alignment and structure
>3eo7_A Putative nitroreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE FMN; 1.80A {Anabaena variabilis atcc 29413} Back     alignment and structure
>1vkw_A Putative nitroreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, oxidoreductase; 2.00A {Thermotoga maritima} SCOP: d.90.1.2 Back     alignment and structure
>3eo7_A Putative nitroreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE FMN; 1.80A {Anabaena variabilis atcc 29413} Back     alignment and structure
>2ymv_A ACG nitroreductase; oxidoreductase, dormancy, reduced FMN; HET: MSE FNR PGE; 1.60A {Mycobacterium smegmatis} Back     alignment and structure
>2ymv_A ACG nitroreductase; oxidoreductase, dormancy, reduced FMN; HET: MSE FNR PGE; 1.60A {Mycobacterium smegmatis} Back     alignment and structure
>1vkw_A Putative nitroreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, oxidoreductase; 2.00A {Thermotoga maritima} SCOP: d.90.1.2 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 254
d2ifaa1199 d.90.1.1 (A:2-200) Hypothetical protein Smu.260 {S 2e-28
d1ywqa1199 d.90.1.1 (A:2-200) Hypothetical oxidoreductase BC1 3e-25
d1ykia1216 d.90.1.1 (A:2-217) Oxygen-insensitive NAD(P)H nitr 3e-24
d1noxa_200 d.90.1.1 (A:) NADH oxidase {Thermus thermophilus, 1e-23
d1vfra_217 d.90.1.1 (A:) Flavin reductase P (NADPH:FMN oxidor 6e-23
d2b67a1201 d.90.1.1 (A:1-201) Hypothetical oxidoreductase SP0 1e-21
d1bkja_239 d.90.1.1 (A:) Flavin reductase P (NADPH:FMN oxidor 2e-21
d1zcha1249 d.90.1.1 (A:1-249) Hypothetical oxidoreductase Ycn 8e-21
d1f5va_240 d.90.1.1 (A:) Oxygen-insensitive NAD(P)H nitroredu 1e-20
d2frea1200 d.90.1.1 (A:1-200) NAD(P)H-flavin oxidoreductase A 4e-17
d1vkwa_217 d.90.1.2 (A:) Putative nitroreductase TM1586 {Ther 9e-12
>d2ifaa1 d.90.1.1 (A:2-200) Hypothetical protein Smu.260 {Streptococcus mutans [TaxId: 1309]} Length = 199 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: FMN-dependent nitroreductase-like
superfamily: FMN-dependent nitroreductase-like
family: NADH oxidase/flavin reductase
domain: Hypothetical protein Smu.260
species: Streptococcus mutans [TaxId: 1309]

 Score =  104 bits (261), Expect = 2e-28
 Identities = 26/200 (13%), Positives = 58/200 (29%), Gaps = 8/200 (4%)

Query: 58  FYQLMNARRTVRFFSDEA-VPKEIIHNIIKTAGT-SPSGAHTEPWTFVIVEDKDMKAKIR 115
           F  L   RR++        + K  +  +I+ A   +PS  +++    +++  +D +    
Sbjct: 3   FLDLQKQRRSIYALGKTVDLSKAELVALIQNAIKQAPSAFNSQTSRALVLFGQDSQDFWN 62

Query: 116 DIVESEERINYDKRMGKEWTTDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKEEGKRKKH 175
            I  SE                L           L     +V   ++ +           
Sbjct: 63  KIAYSELEKVTPAEAFAGTKAKLESFAAGVGTILLFEDQAVVRNLEENFPL---YAENFQ 119

Query: 176 YYHEMSVSLACGIMLAAIQYCGLVT-LTSTPLNAGPALRTLLDRPGNEKLALLLPIGYPA 234
            + E +  +A   +  A+    +   +          +    D P N K+   +P G   
Sbjct: 120 PWSEQAHGIALYAIWLALAEQNIGMSVQHYNPLVDAQVAEKYDLPTNWKMRAQIPFGSIE 179

Query: 235 LDCTVPNLKRKDIEDIIVEF 254
                   +    ++    F
Sbjct: 180 APAGEK--EFMADQERFKVF 197
>d1ywqa1 d.90.1.1 (A:2-200) Hypothetical oxidoreductase BC1844 {Bacillus cereus [TaxId: 1396]} Length = 199 Back     information, alignment and structure
>d1ykia1 d.90.1.1 (A:2-217) Oxygen-insensitive NAD(P)H nitroreductase {Escherichia coli, minor form, NfnB [TaxId: 562]} Length = 216 Back     information, alignment and structure
>d1noxa_ d.90.1.1 (A:) NADH oxidase {Thermus thermophilus, HB8 [TaxId: 274]} Length = 200 Back     information, alignment and structure
>d1vfra_ d.90.1.1 (A:) Flavin reductase P (NADPH:FMN oxidoreductase) {Vibrio fischeri [TaxId: 668]} Length = 217 Back     information, alignment and structure
>d2b67a1 d.90.1.1 (A:1-201) Hypothetical oxidoreductase SP0622 {Streptococcus pneumoniae [TaxId: 1313]} Length = 201 Back     information, alignment and structure
>d1bkja_ d.90.1.1 (A:) Flavin reductase P (NADPH:FMN oxidoreductase) {Vibrio harveyi [TaxId: 669]} Length = 239 Back     information, alignment and structure
>d1zcha1 d.90.1.1 (A:1-249) Hypothetical oxidoreductase YcnD {Bacillus subtilis [TaxId: 1423]} Length = 249 Back     information, alignment and structure
>d1f5va_ d.90.1.1 (A:) Oxygen-insensitive NAD(P)H nitroreductase {Escherichia coli, major form, NfsA [TaxId: 562]} Length = 240 Back     information, alignment and structure
>d2frea1 d.90.1.1 (A:1-200) NAD(P)H-flavin oxidoreductase Atu0013 {Agrobacterium tumefaciens [TaxId: 358]} Length = 200 Back     information, alignment and structure
>d1vkwa_ d.90.1.2 (A:) Putative nitroreductase TM1586 {Thermotoga maritima [TaxId: 2336]} Length = 217 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query254
d1noxa_200 NADH oxidase {Thermus thermophilus, HB8 [TaxId: 27 100.0
d1f5va_240 Oxygen-insensitive NAD(P)H nitroreductase {Escheri 100.0
d1zcha1249 Hypothetical oxidoreductase YcnD {Bacillus subtili 100.0
d1bkja_239 Flavin reductase P (NADPH:FMN oxidoreductase) {Vib 100.0
d2b67a1201 Hypothetical oxidoreductase SP0622 {Streptococcus 100.0
d2frea1200 NAD(P)H-flavin oxidoreductase Atu0013 {Agrobacteri 100.0
d2ifaa1199 Hypothetical protein Smu.260 {Streptococcus mutans 100.0
d1ykia1216 Oxygen-insensitive NAD(P)H nitroreductase {Escheri 100.0
d1vfra_217 Flavin reductase P (NADPH:FMN oxidoreductase) {Vib 100.0
d1ywqa1199 Hypothetical oxidoreductase BC1844 {Bacillus cereu 100.0
d1vkwa_217 Putative nitroreductase TM1586 {Thermotoga maritim 99.92
d1vkwa_217 Putative nitroreductase TM1586 {Thermotoga maritim 97.54
>d1noxa_ d.90.1.1 (A:) NADH oxidase {Thermus thermophilus, HB8 [TaxId: 274]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FMN-dependent nitroreductase-like
superfamily: FMN-dependent nitroreductase-like
family: NADH oxidase/flavin reductase
domain: NADH oxidase
species: Thermus thermophilus, HB8 [TaxId: 274]

Probab=100.00  E-value=4.8e-39  Score=264.35  Aligned_cols=169  Identities=20%  Similarity=0.386  Sum_probs=136.0

Q ss_pred             HHHHHHHHhccccCCCCCCCCCHHHHHHHHHHhccCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHhhhhhhhhhhccccc
Q psy144           56 EEFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGKEWT  135 (254)
Q Consensus        56 ~~~~e~i~~RRSvR~F~~~~V~~e~i~~il~~A~~APS~~n~qpw~f~vv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  135 (254)
                      |++.++|.+|||||+|+++|||+++|++||++|++|||++|+|||+|+||++++.+++|.++...               
T Consensus         3 Md~~~~i~~RrSvR~f~~~~V~~e~i~~il~aa~~aPS~~n~qp~~~~vv~~~~~~~~l~~~~~~---------------   67 (200)
T d1noxa_           3 LDAKTAALKRRSIRRYRKDPVPEGLLREILEAALRAPSAWNLQPWRIVVVRDPATKRALREAAFG---------------   67 (200)
T ss_dssp             CCHHHHHHHCCCCCCBCSCCCCHHHHHHHHHHHTTCCCGGGCCCEEEEEECCHHHHHHHHHHTTT---------------
T ss_pred             ccHHHHHHHCCcccCCCcCCCCHHHHHHHHHHHHhCcCccCCCceeEEEEecchHHHHHHHHHhh---------------
Confidence            68999999999999999999999999999999999999999999999999999999999886421               


Q ss_pred             ccchhhhhhHHhhhhcCCCeEEEEEeecCCcc----------------------------ccccccccchhhccHHHHHH
Q psy144          136 TDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFK----------------------------EEGKRKKHYYHEMSVSLACG  187 (254)
Q Consensus       136 ~~~~~~~~~~~~~~~~~Ap~~ii~~~~~~~~~----------------------------~~~~~~~~~~~~~~~g~a~~  187 (254)
                                 +....+++.++++..+.....                            ..+......+...|+|+++|
T Consensus        68 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~a~~  136 (200)
T d1noxa_          68 -----------QAHVEEAPVVLVLYADLEDALAHLDEVIHPGVQGERREAQKQAIQRAFAAMGQEARKAWASGQSYILLG  136 (200)
T ss_dssp             -----------CTHHHHSSEEEEEEECHHHHHHTGGGTSCTTCCTHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred             -----------hhhhhcCCceEEeecchHHHHHHHHHHHhhcchhhhHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Confidence                       112233444444333211000                            00111223355679999999


Q ss_pred             HHHHHHHHcCCccccccCCCChHHHHhhcCCCCCceEEEEEeeccCCCCCCCCCCCCCCcccceEe
Q psy144          188 IMLAAIQYCGLVTLTSTPLNAGPALRTLLDRPGNEKLALLLPIGYPALDCTVPNLKRKDIEDIIVE  253 (254)
Q Consensus       188 ~l~Laa~a~Glgs~~~~~~~~~~~v~~~Lglp~~~~~~~~l~vGyp~~~~~~p~~~Rkpl~ei~~~  253 (254)
                      ||+|+|+++||||||+++++. ++++++||||+++.+++++++|||+++..  ..+|+|++||++|
T Consensus       137 n~~Laa~s~Glgs~~~~~~~~-~~l~~~l~ip~~~~~v~~i~iGyp~~~~~--~~~R~~~~eiv~~  199 (200)
T d1noxa_         137 YLLLLLEAYGLGSVPMLGFDP-ERVRAILGLPSRAAIPALVALGYPAEEGY--PSHRLPLERVVLW  199 (200)
T ss_dssp             HHHHHHHHTTCEEEEECCSCH-HHHHHHHTCCTTCEEEEEEEEESBSSCCC--CCCCCCHHHHCCC
T ss_pred             HHHHHHHHcCCCeecccccCH-HHHHHHcCCCCCCEEEEEEEEECcCCCCC--CCCCCCHHHeEEe
Confidence            999999999999999999975 89999999999999999999999998754  3579999999987
>d1f5va_ d.90.1.1 (A:) Oxygen-insensitive NAD(P)H nitroreductase {Escherichia coli, major form, NfsA [TaxId: 562]} Back     information, alignment and structure
>d1zcha1 d.90.1.1 (A:1-249) Hypothetical oxidoreductase YcnD {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1bkja_ d.90.1.1 (A:) Flavin reductase P (NADPH:FMN oxidoreductase) {Vibrio harveyi [TaxId: 669]} Back     information, alignment and structure
>d2b67a1 d.90.1.1 (A:1-201) Hypothetical oxidoreductase SP0622 {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d2frea1 d.90.1.1 (A:1-200) NAD(P)H-flavin oxidoreductase Atu0013 {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d2ifaa1 d.90.1.1 (A:2-200) Hypothetical protein Smu.260 {Streptococcus mutans [TaxId: 1309]} Back     information, alignment and structure
>d1ykia1 d.90.1.1 (A:2-217) Oxygen-insensitive NAD(P)H nitroreductase {Escherichia coli, minor form, NfnB [TaxId: 562]} Back     information, alignment and structure
>d1vfra_ d.90.1.1 (A:) Flavin reductase P (NADPH:FMN oxidoreductase) {Vibrio fischeri [TaxId: 668]} Back     information, alignment and structure
>d1ywqa1 d.90.1.1 (A:2-200) Hypothetical oxidoreductase BC1844 {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d1vkwa_ d.90.1.2 (A:) Putative nitroreductase TM1586 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1vkwa_ d.90.1.2 (A:) Putative nitroreductase TM1586 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure