Psyllid ID: psy14529

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------6
Protein Sequence
MRRFQVVISTQVGVDGPLLAVSDNIPSEGWTSGGATVIIVGDNFFDGLQVVFGTMLVWS
Secondary Structure (PSIPRED)
ccEEEEEEEEEcccccccEEEEcccccccccccccEEEEEcccccccEEEEEEEEEEEc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEEEccccccEEEEccccccccccccccEEEEEccccccccEEEEccEEEEc
Coil and Loop (DISEMBL)
MRRFQVVISTqvgvdgpllavsdnipsegwtsggaTVIIVGDNFFDGLQVVFGTMLVWS
Flexible Loop (DISEMBL)
MRRFQVVIstqvgvdgpllAVSDNIPSEGWTSGGATVIIVGDNFFDGLQVVFGTMLVWS
Low Complexity Region (SEG)
MRRFQVVISTQVGVDGPLLAVSDNIPSEGWTSGGATVIIVGDNFFDGLQVVFGTMLVWS
Disordered region (IsUnstruct)
***FQVVISTQVGVDGPLLAVSDNIPSEGWTSGGATVIIVGDNFFDGLQVVFGTMLVW*
Disordered Region (DISOPRED)
*RRFQ**ISTQVGVDGPLLAVSDNIPSEGWTSGGATVIIVGDNFFDGLQVVFGTMLVWS
Disordered Region (DISEMBL)
MRRFQVVISTQVGVDGPLLAVSDNIPSEGWTSGGATVIIVGDNFFDGLQVVFGTMLVWS
Disordered Region (DISPRO)
*RRFQVVISTQVGVDGPLLAVSDNIPSEGWTSGGATVIIVGDNFFDGLQVVFGTMLVWS
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (MEMSAT)
iihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MRRFQVVISTQVGVDGPLLAVSDNIPSEGWTSGGATVIIVGDNFFDGLQVVFGTMLVWS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	59	2.2.26 [Sep-21-2011]
Q63398	584	Transcription factor COE1	yes	N/A	1.0	0.101	0.568	6e-21
Q6P4K7	575	Transcription factor coe2	no	N/A	1.0	0.102	0.574	2e-20
B7ZRJ4	575	Transcription factor coe2	N/A	N/A	1.0	0.102	0.574	3e-20
Q9HAK2	575	Transcription factor COE2	no	N/A	1.0	0.102	0.574	3e-20
Q08DL5	575	Transcription factor COE2	no	N/A	1.0	0.102	0.574	3e-20
O08792	575	Transcription factor COE2	no	N/A	1.0	0.102	0.574	3e-20
Q07802	591	Transcription factor COE1	no	N/A	1.0	0.099	0.526	4e-20
Q9UH73	591	Transcription factor COE1	no	N/A	1.0	0.099	0.526	4e-20
O08791	596	Transcription factor COE3	no	N/A	1.0	0.098	0.531	5e-20
Q9H4W6	596	Transcription factor COE3	no	N/A	1.0	0.098	0.531	5e-20

>sp|Q63398|COE1_RAT Transcription factor COE1 OS=Rattus norvegicus GN=Ebf1 PE=1 SV=2

 Score = 99.4 bits (246), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 50/88 (56%), Positives = 56/88 (63%), Gaps = 29/88 (32%)

Query: 1   MRRFQVVISTQVGVDGPLLAVSDNI-----------------------------PSEGWT 31
           MRRFQVV+ST V VDG +LAVSDN+                             PSEGWT
Sbjct: 208 MRRFQVVVSTTVNVDGHVLAVSDNMFVHNNSKHGRRARRLDPSEAATPCIKAISPSEGWT 267

Query: 32  SGGATVIIVGDNFFDGLQVVFGTMLVWS 59
           +GGATVII+GDNFFDGLQV+FGTMLVWS
Sbjct: 268 TGGATVIIIGDNFFDGLQVIFGTMLVWS 295

Transcriptional activator which recognizes variations of the palindromic sequence 5'-ATTCCCNNGGGAATT-3'.
Rattus norvegicus (taxid: 10116)

>sp|Q6P4K7|COE2_XENTR Transcription factor coe2 OS=Xenopus tropicalis GN=ebf2 PE=2 SV=1

 Score = 97.4 bits (241), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 50/87 (57%), Positives = 55/87 (63%), Gaps = 28/87 (32%)

Query: 1   MRRFQVVISTQVGVDGPLLAVSDNI----------------------------PSEGWTS 32
           MRRFQVV+ST V VDG +LAVSDN+                            PSEGWT+
Sbjct: 208 MRRFQVVLSTTVNVDGHVLAVSDNMFVHNNSKHGRRARRLDPSEATPCIKAISPSEGWTT 267

Query: 33  GGATVIIVGDNFFDGLQVVFGTMLVWS 59
           GGA VII+GDNFFDGLQVVFGTMLVWS
Sbjct: 268 GGAMVIIIGDNFFDGLQVVFGTMLVWS 294

May play a pivotal role in the transcriptional cascade that specifies primary neurons in embryos. Stabilizes the higher neural potential of selected progenitor cells that express neurog2/X-ngnr-1 by maintaining Delta-Notch signaling. Thus ensures the transition between neural competence and irreversible commitment to a neural fate. Also promotes neuronal differentiation by activating neurod1 expression, directly or indirectly.

Xenopus tropicalis (taxid: 8364)

>sp|B7ZRJ4|COE2A_XENLA Transcription factor coe2-A OS=Xenopus laevis GN=ebf2-a PE=2 SV=1

 Score = 97.1 bits (240), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 50/87 (57%), Positives = 55/87 (63%), Gaps = 28/87 (32%)

Query: 1   MRRFQVVISTQVGVDGPLLAVSDNI----------------------------PSEGWTS 32
           MRRFQVV+ST V VDG +LAVSDN+                            PSEGWT+
Sbjct: 208 MRRFQVVLSTTVNVDGHVLAVSDNMFVHNNSKHGRRARRLDPSEATPCIKAISPSEGWTT 267

Query: 33  GGATVIIVGDNFFDGLQVVFGTMLVWS 59
           GGA VII+GDNFFDGLQVVFGTMLVWS
Sbjct: 268 GGAMVIIIGDNFFDGLQVVFGTMLVWS 294

May play a pivotal role in the transcriptional cascade that specifies primary neurons in embryos. Stabilizes the higher neural potential of selected progenitor cells that express neurog2/X-ngnr-1 by maintaining Delta-Notch signaling. Thus ensures the transition between neural competence and irreversible commitment to a neural fate. Also promotes neuronal differentiation by activating neurod1 expression, directly or indirectly.

Xenopus laevis (taxid: 8355)

>sp|Q9HAK2|COE2_HUMAN Transcription factor COE2 OS=Homo sapiens GN=EBF2 PE=1 SV=4

 Score = 97.1 bits (240), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 50/87 (57%), Positives = 55/87 (63%), Gaps = 28/87 (32%)

Query: 1   MRRFQVVISTQVGVDGPLLAVSDNI----------------------------PSEGWTS 32
           MRRFQVV+ST V VDG +LAVSDN+                            PSEGWT+
Sbjct: 207 MRRFQVVLSTTVNVDGHVLAVSDNMFVHNNSKHGRRARRLDPSEATPCIKAISPSEGWTT 266

Query: 33  GGATVIIVGDNFFDGLQVVFGTMLVWS 59
           GGA VII+GDNFFDGLQVVFGTMLVWS
Sbjct: 267 GGAMVIIIGDNFFDGLQVVFGTMLVWS 293

Transcription factor that, in osteoblasts, activates the decoy receptor for RANKL, TNFRSF11B, which in turn regulates osteoclast differentiation. Acts in synergy with the Wnt-responsive LEF1/CTNNB1 pathway. Recognizes variations of the palindromic sequence 5'-ATTCCCNNGGGAATT-3'.

Homo sapiens (taxid: 9606)

>sp|Q08DL5|COE2_BOVIN Transcription factor COE2 OS=Bos taurus GN=EBF2 PE=2 SV=1

 Score = 97.1 bits (240), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 50/87 (57%), Positives = 55/87 (63%), Gaps = 28/87 (32%)

Query: 1   MRRFQVVISTQVGVDGPLLAVSDNI----------------------------PSEGWTS 32
           MRRFQVV+ST V VDG +LAVSDN+                            PSEGWT+
Sbjct: 207 MRRFQVVLSTTVNVDGHVLAVSDNMFVHNNSKHGRRARRLDPSEATPCIKAISPSEGWTT 266

Query: 33  GGATVIIVGDNFFDGLQVVFGTMLVWS 59
           GGA VII+GDNFFDGLQVVFGTMLVWS
Sbjct: 267 GGAMVIIIGDNFFDGLQVVFGTMLVWS 293

Transcription factor that, in osteoblasts, activates the decoy receptor for RANKL, TNFRSF11B, which in turn regulates osteoclast differentiation. Acts in synergy with the Wnt-responsive LEF1/CTNNB1 pathway. Recognizes variations of the palindromic sequence 5'-ATTCCCNNGGGAATT-3'.

Bos taurus (taxid: 9913)

>sp|O08792|COE2_MOUSE Transcription factor COE2 OS=Mus musculus GN=Ebf2 PE=1 SV=4

 Score = 97.1 bits (240), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 50/87 (57%), Positives = 55/87 (63%), Gaps = 28/87 (32%)

Query: 1   MRRFQVVISTQVGVDGPLLAVSDNI----------------------------PSEGWTS 32
           MRRFQVV+ST V VDG +LAVSDN+                            PSEGWT+
Sbjct: 207 MRRFQVVLSTTVNVDGHVLAVSDNMFVHNNSKHGRRARRLDPSEATPCIKAISPSEGWTT 266

Query: 33  GGATVIIVGDNFFDGLQVVFGTMLVWS 59
           GGA VII+GDNFFDGLQVVFGTMLVWS
Sbjct: 267 GGAMVIIIGDNFFDGLQVVFGTMLVWS 293

Transcription factor that, in osteoblasts, activates the decoy receptor for RANKL, TNFRSF11B, which in turn regulates osteoclast differentiation. Acts in synergy with the Wnt-responsive LEF1/CTNNB1 pathway. Recognizes variations of the palindromic sequence 5'-ATTCCCNNGGGAATT-3'.

Mus musculus (taxid: 10090)

>sp|Q07802|COE1_MOUSE Transcription factor COE1 OS=Mus musculus GN=Ebf1 PE=1 SV=1

 Score = 96.7 bits (239), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 50/95 (52%), Positives = 56/95 (58%), Gaps = 36/95 (37%)

Query: 1   MRRFQVVISTQVGVDGPLLAVSDNI----------------------------------- 25
           MRRFQVV+ST V VDG +LAVSDN+                                   
Sbjct: 208 MRRFQVVVSTTVNVDGHVLAVSDNMFVHNNSKHGRRARRLDPSEGTPSYLEHATPCIKAI 267

Query: 26  -PSEGWTSGGATVIIVGDNFFDGLQVVFGTMLVWS 59
            PSEGWT+GGATVII+GDNFFDGLQV+FGTMLVWS
Sbjct: 268 SPSEGWTTGGATVIIIGDNFFDGLQVIFGTMLVWS 302

Transcriptional activator which recognizes variations of the palindromic sequence 5'-ATTCCCNNGGGAATT-3'.

Mus musculus (taxid: 10090)

>sp|Q9UH73|COE1_HUMAN Transcription factor COE1 OS=Homo sapiens GN=EBF1 PE=1 SV=2

 Score = 96.7 bits (239), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 50/95 (52%), Positives = 56/95 (58%), Gaps = 36/95 (37%)

Query: 1   MRRFQVVISTQVGVDGPLLAVSDNI----------------------------------- 25
           MRRFQVV+ST V VDG +LAVSDN+                                   
Sbjct: 208 MRRFQVVVSTTVNVDGHVLAVSDNMFVHNNSKHGRRARRLDPSEGTPSYLEHATPCIKAI 267

Query: 26  -PSEGWTSGGATVIIVGDNFFDGLQVVFGTMLVWS 59
            PSEGWT+GGATVII+GDNFFDGLQV+FGTMLVWS
Sbjct: 268 SPSEGWTTGGATVIIIGDNFFDGLQVIFGTMLVWS 302

Transcriptional activator which recognizes variations of the palindromic sequence 5'-ATTCCCNNGGGAATT-3'.

Homo sapiens (taxid: 9606)

>sp|O08791|COE3_MOUSE Transcription factor COE3 OS=Mus musculus GN=Ebf3 PE=2 SV=1

 Score = 96.3 bits (238), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 51/96 (53%), Positives = 56/96 (58%), Gaps = 37/96 (38%)

Query: 1   MRRFQVVISTQVGVDGPLLAVSDNI----------------------------------- 25
           MRRFQVV+ST V VDG +LAVSDN+                                   
Sbjct: 208 MRRFQVVVSTTVNVDGHVLAVSDNMFVHNNSKHGRRARRLDPSEGTAPSYLENATPCIKA 267

Query: 26  --PSEGWTSGGATVIIVGDNFFDGLQVVFGTMLVWS 59
             PSEGWT+GGATVII+GDNFFDGLQVVFGTMLVWS
Sbjct: 268 ISPSEGWTTGGATVIIIGDNFFDGLQVVFGTMLVWS 303

Transcriptional activator which recognizes variations of the palindromic sequence 5'-ATTCCCNNGGGAATT-3'.

Mus musculus (taxid: 10090)

>sp|Q9H4W6|COE3_HUMAN Transcription factor COE3 OS=Homo sapiens GN=EBF3 PE=1 SV=2

 Score = 96.3 bits (238), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 51/96 (53%), Positives = 56/96 (58%), Gaps = 37/96 (38%)

Query: 1   MRRFQVVISTQVGVDGPLLAVSDNI----------------------------------- 25
           MRRFQVV+ST V VDG +LAVSDN+                                   
Sbjct: 208 MRRFQVVVSTTVNVDGHVLAVSDNMFVHNNSKHGRRARRLDPSEGTAPSYLENATPCIKA 267

Query: 26  --PSEGWTSGGATVIIVGDNFFDGLQVVFGTMLVWS 59
             PSEGWT+GGATVII+GDNFFDGLQVVFGTMLVWS
Sbjct: 268 ISPSEGWTTGGATVIIIGDNFFDGLQVVFGTMLVWS 303

Transcriptional activator which recognizes variations of the palindromic sequence 5'-ATTCCCNNGGGAATT-3'.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	59
345479048	842	PREDICTED: transcription factor collier-	1.0	0.070	0.580	4e-21
270002853	918	knot [Tribolium castaneum]	1.0	0.064	0.568	7e-21
189234876	907	PREDICTED: similar to knot CG10197-PB [T	1.0	0.065	0.568	7e-21
383860678	667	PREDICTED: LOW QUALITY PROTEIN: transcri	1.0	0.088	0.559	7e-20
328792877	706	PREDICTED: transcription factor collier	1.0	0.083	0.559	8e-20
350412365	657	PREDICTED: transcription factor collier-	1.0	0.089	0.559	8e-20
312174930	501	collier protein [Parhyale hawaiensis]	1.0	0.117	0.562	9e-20
357602156	693	hypothetical protein KGM_09934 [Danaus p	1.0	0.085	0.523	1e-19
340709458	679	PREDICTED: transcription factor collier-	1.0	0.086	0.559	1e-19
432903197	588	PREDICTED: transcription factor COE3-lik	1.0	0.100	0.586	1e-19

>gi|345479048|ref|XP_001607605.2| PREDICTED: transcription factor collier-like [Nasonia vitripennis]

 Score =  105 bits (262), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 54/93 (58%), Positives = 58/93 (62%), Gaps = 34/93 (36%)

Query: 1   MRRFQVVISTQVGVDGPLLAVSDNI----------------------------------P 26
           MRRFQV+ISTQVGVDGPLLAVSDN+                                  P
Sbjct: 464 MRRFQVIISTQVGVDGPLLAVSDNMFVHNNSKHGRRAKRLDPSLYPPLQMATPCIKTMAP 523

Query: 27  SEGWTSGGATVIIVGDNFFDGLQVVFGTMLVWS 59
           SEGWTSGG +VII+GDNFFDGLQVVFGTMLVWS
Sbjct: 524 SEGWTSGGQSVIILGDNFFDGLQVVFGTMLVWS 556

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270002853|gb|EEZ99300.1| knot [Tribolium castaneum]

 Score =  104 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 54/95 (56%), Positives = 58/95 (61%), Gaps = 36/95 (37%)

Query: 1   MRRFQVVISTQVGVDGPLLAVSDNI----------------------------------- 25
           MRRFQVVI+TQV VDGPLLA+SDN+                                   
Sbjct: 557 MRRFQVVIATQVSVDGPLLAISDNMFVHNNSKHGRRAKRLDPTEGLYPPLPVATPCIKAI 616

Query: 26  -PSEGWTSGGATVIIVGDNFFDGLQVVFGTMLVWS 59
            PSEGWTSGG+TVIIVGDNFFDGLQVVFGTMLVWS
Sbjct: 617 SPSEGWTSGGSTVIIVGDNFFDGLQVVFGTMLVWS 651

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189234876|ref|XP_973686.2| PREDICTED: similar to knot CG10197-PB [Tribolium castaneum]

 Score =  104 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 54/95 (56%), Positives = 58/95 (61%), Gaps = 36/95 (37%)

Query: 1   MRRFQVVISTQVGVDGPLLAVSDNI----------------------------------- 25
           MRRFQVVI+TQV VDGPLLA+SDN+                                   
Sbjct: 505 MRRFQVVIATQVSVDGPLLAISDNMFVHNNSKHGRRAKRLDPTEGLYPPLPVATPCIKAI 564

Query: 26  -PSEGWTSGGATVIIVGDNFFDGLQVVFGTMLVWS 59
            PSEGWTSGG+TVIIVGDNFFDGLQVVFGTMLVWS
Sbjct: 565 SPSEGWTSGGSTVIIVGDNFFDGLQVVFGTMLVWS 599

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383860678|ref|XP_003705816.1| PREDICTED: LOW QUALITY PROTEIN: transcription factor collier-like [Megachile rotundata]

 Score =  101 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 52/93 (55%), Positives = 59/93 (63%), Gaps = 34/93 (36%)

Query: 1   MRRFQVVISTQVGVDGPLLAVSDNI----------------------------------P 26
           MRRFQVVISTQVGV+GPLLAVSDN+                                  P
Sbjct: 307 MRRFQVVISTQVGVEGPLLAVSDNMFVHNNSKHGRRAKRLDPSLYTPVPLQTPCIKAISP 366

Query: 27  SEGWTSGGATVIIVGDNFFDGLQVVFGTMLVWS 59
           +EGWTSGG+TVII+G+NFFDGLQVVFG+MLVWS
Sbjct: 367 NEGWTSGGSTVIIIGENFFDGLQVVFGSMLVWS 399

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328792877|ref|XP_394171.4| PREDICTED: transcription factor collier [Apis mellifera]

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 52/93 (55%), Positives = 59/93 (63%), Gaps = 34/93 (36%)

Query: 1   MRRFQVVISTQVGVDGPLLAVSDNI----------------------------------P 26
           MRRFQVVISTQVGV+GPLLAVSDN+                                  P
Sbjct: 346 MRRFQVVISTQVGVEGPLLAVSDNMFVHNNSKHGRRTKRLDPSLYTPVPLQTPCIKAISP 405

Query: 27  SEGWTSGGATVIIVGDNFFDGLQVVFGTMLVWS 59
           +EGWTSGG+TVII+G+NFFDGLQVVFG+MLVWS
Sbjct: 406 NEGWTSGGSTVIIIGENFFDGLQVVFGSMLVWS 438

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350412365|ref|XP_003489621.1| PREDICTED: transcription factor collier-like [Bombus impatiens]

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 52/93 (55%), Positives = 59/93 (63%), Gaps = 34/93 (36%)

Query: 1   MRRFQVVISTQVGVDGPLLAVSDNI----------------------------------P 26
           MRRFQVVISTQVGV+GPLLAVSDN+                                  P
Sbjct: 297 MRRFQVVISTQVGVEGPLLAVSDNMFVHNNSKHGRRTKRLDPSLYTPVPLQTPCIKAISP 356

Query: 27  SEGWTSGGATVIIVGDNFFDGLQVVFGTMLVWS 59
           +EGWTSGG+TVII+G+NFFDGLQVVFG+MLVWS
Sbjct: 357 NEGWTSGGSTVIIIGENFFDGLQVVFGSMLVWS 389

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312174930|emb|CBH20111.1| collier protein [Parhyale hawaiensis]

 Score =  100 bits (250), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 54/96 (56%), Positives = 56/96 (58%), Gaps = 37/96 (38%)

Query: 1   MRRFQVVISTQVGVDGPLLAVSDNI----------------------------------- 25
           MRRFQVVISTQV V GPLLAVSDN+                                   
Sbjct: 259 MRRFQVVISTQVDVSGPLLAVSDNMFVHNNSKHGRRAKRIDTADAMFGLYPPLPTPCVKA 318

Query: 26  --PSEGWTSGGATVIIVGDNFFDGLQVVFGTMLVWS 59
             PSEGWTSGGATV+IVGDNFFDGLQVVFGT LVWS
Sbjct: 319 ICPSEGWTSGGATVVIVGDNFFDGLQVVFGTTLVWS 354

Source: Parhyale hawaiensis

Species: Parhyale hawaiensis

Genus: Parhyale

Family: Hyalidae

Order: Amphipoda

Class: Malacostraca

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357602156|gb|EHJ63297.1| hypothetical protein KGM_09934 [Danaus plexippus]

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 55/105 (52%), Positives = 58/105 (55%), Gaps = 46/105 (43%)

Query: 1   MRRFQVVISTQVGVDGPLLAVSDNI----------------------------------- 25
           MRRFQVVISTQV VDGPLLA+SDN+                                   
Sbjct: 299 MRRFQVVISTQVMVDGPLLAISDNMFVHNNSKHGRRAKRLDPSEGIDAAPDSNSGLYPPL 358

Query: 26  -----------PSEGWTSGGATVIIVGDNFFDGLQVVFGTMLVWS 59
                      PSEGWTSGG+TVIIVGDNFFDGLQVVFGTMLVWS
Sbjct: 359 PVATPCIKAISPSEGWTSGGSTVIIVGDNFFDGLQVVFGTMLVWS 403

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340709458|ref|XP_003393325.1| PREDICTED: transcription factor collier-like [Bombus terrestris]

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 52/93 (55%), Positives = 59/93 (63%), Gaps = 34/93 (36%)

Query: 1   MRRFQVVISTQVGVDGPLLAVSDNI----------------------------------P 26
           MRRFQVVISTQVGV+GPLLAVSDN+                                  P
Sbjct: 319 MRRFQVVISTQVGVEGPLLAVSDNMFVHNNSKHGRRTKRLDPSLYTPVPLQTPCIKAISP 378

Query: 27  SEGWTSGGATVIIVGDNFFDGLQVVFGTMLVWS 59
           +EGWTSGG+TVII+G+NFFDGLQVVFG+MLVWS
Sbjct: 379 NEGWTSGGSTVIIIGENFFDGLQVVFGSMLVWS 411

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|432903197|ref|XP_004077131.1| PREDICTED: transcription factor COE3-like isoform 3 [Oryzias latipes]

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 51/87 (58%), Positives = 56/87 (64%), Gaps = 28/87 (32%)

Query: 1   MRRFQVVISTQVGVDGPLLAVSDNI----------------------------PSEGWTS 32
           MRRFQVV+ST V VDG +LAVSDN+                            PSEGWT+
Sbjct: 207 MRRFQVVVSTTVNVDGHVLAVSDNMFVHNNSKHGRRARRLDPSEATPCIKAISPSEGWTT 266

Query: 33  GGATVIIVGDNFFDGLQVVFGTMLVWS 59
           GGATVII+GDNFFDGLQVVFGTMLVWS
Sbjct: 267 GGATVIIIGDNFFDGLQVVFGTMLVWS 293

Source: Oryzias latipes

Species: Oryzias latipes

Genus: Oryzias

Family: Adrianichthyidae

Order: Beloniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	59
UNIPROTKB|F1NPQ1	193	EBF1 "Uncharacterized protein"	0.576	0.176	0.911	4.7e-22
UNIPROTKB|F1MGH0	403	F1MGH0 "Uncharacterized protei	0.576	0.084	0.941	8.2e-21
UNIPROTKB|F1NNP7	414	F1NNP7 "Uncharacterized protei	0.576	0.082	0.941	9.3e-21
UNIPROTKB|F1PG23	428	EBF3 "Uncharacterized protein"	0.576	0.079	0.941	1.1e-20
UNIPROTKB|F1RR33	412	LOC100520467 "Uncharacterized	0.576	0.082	0.911	1.2e-20
ZFIN|ZDB-GENE-070112-292	548	ebf3 "early B-cell factor 3" [	0.576	0.062	0.941	2.9e-20
UNIPROTKB|E5RFQ1	523	EBF1 "Transcription factor COE	0.576	0.065	0.911	3.1e-20
UNIPROTKB|Q9H4W6	596	EBF3 "Transcription factor COE	0.576	0.057	0.941	3.9e-20
MGI|MGI:894289	596	Ebf3 "early B cell factor 3" [	0.576	0.057	0.941	3.9e-20
RGD|1304956	596	Ebf3 "early B-cell factor 3" [	0.576	0.057	0.941	3.9e-20

UNIPROTKB|F1NPQ1 EBF1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 178 (67.7 bits), Expect = 4.7e-22, Sum P(2) = 4.7e-22
 Identities = 31/34 (91%), Positives = 34/34 (100%)

Query:    26 PSEGWTSGGATVIIVGDNFFDGLQVVFGTMLVWS 59
             PSEGWT+GGATVII+GDNFFDGLQV+FGTMLVWS
Sbjct:   158 PSEGWTTGGATVIIIGDNFFDGLQVIFGTMLVWS 191

GO:0003677 "DNA binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|F1MGH0 F1MGH0 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 179 (68.1 bits), Expect = 8.2e-21, Sum P(2) = 8.2e-21
 Identities = 32/34 (94%), Positives = 34/34 (100%)

Query:    26 PSEGWTSGGATVIIVGDNFFDGLQVVFGTMLVWS 59
             PSEGWT+GGATVII+GDNFFDGLQVVFGTMLVWS
Sbjct:    77 PSEGWTTGGATVIIIGDNFFDGLQVVFGTMLVWS 110

GO:0005634 "nucleus" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

UNIPROTKB|F1NNP7 F1NNP7 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 179 (68.1 bits), Expect = 9.3e-21, Sum P(2) = 9.3e-21
 Identities = 32/34 (94%), Positives = 34/34 (100%)

Query:    26 PSEGWTSGGATVIIVGDNFFDGLQVVFGTMLVWS 59
             PSEGWT+GGATVII+GDNFFDGLQVVFGTMLVWS
Sbjct:    87 PSEGWTTGGATVIIIGDNFFDGLQVVFGTMLVWS 120

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|F1PG23 EBF3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 179 (68.1 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
 Identities = 32/34 (94%), Positives = 34/34 (100%)

Query:    26 PSEGWTSGGATVIIVGDNFFDGLQVVFGTMLVWS 59
             PSEGWT+GGATVII+GDNFFDGLQVVFGTMLVWS
Sbjct:   102 PSEGWTTGGATVIIIGDNFFDGLQVVFGTMLVWS 135

GO:0005634 "nucleus" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

UNIPROTKB|F1RR33 LOC100520467 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 178 (67.7 bits), Expect = 1.2e-20, Sum P(2) = 1.2e-20
 Identities = 31/34 (91%), Positives = 34/34 (100%)

Query:    26 PSEGWTSGGATVIIVGDNFFDGLQVVFGTMLVWS 59
             PSEGWT+GGATVII+GDNFFDGLQV+FGTMLVWS
Sbjct:    92 PSEGWTTGGATVIIIGDNFFDGLQVIFGTMLVWS 125

GO:0005634 "nucleus" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

ZFIN|ZDB-GENE-070112-292 ebf3 "early B-cell factor 3" [Danio rerio (taxid:7955)]

 Score = 179 (68.1 bits), Expect = 2.9e-20, Sum P(2) = 2.9e-20
 Identities = 32/34 (94%), Positives = 34/34 (100%)

Query:    26 PSEGWTSGGATVIIVGDNFFDGLQVVFGTMLVWS 59
             PSEGWT+GGATVII+GDNFFDGLQVVFGTMLVWS
Sbjct:   262 PSEGWTTGGATVIIIGDNFFDGLQVVFGTMLVWS 295

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

UNIPROTKB|E5RFQ1 EBF1 "Transcription factor COE1" [Homo sapiens (taxid:9606)]

 Score = 178 (67.7 bits), Expect = 3.1e-20, Sum P(2) = 3.1e-20
 Identities = 31/34 (91%), Positives = 34/34 (100%)

Query:    26 PSEGWTSGGATVIIVGDNFFDGLQVVFGTMLVWS 59
             PSEGWT+GGATVII+GDNFFDGLQV+FGTMLVWS
Sbjct:   261 PSEGWTTGGATVIIIGDNFFDGLQVIFGTMLVWS 294

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q9H4W6 EBF3 "Transcription factor COE3" [Homo sapiens (taxid:9606)]

 Score = 179 (68.1 bits), Expect = 3.9e-20, Sum P(2) = 3.9e-20
 Identities = 32/34 (94%), Positives = 34/34 (100%)

Query:    26 PSEGWTSGGATVIIVGDNFFDGLQVVFGTMLVWS 59
             PSEGWT+GGATVII+GDNFFDGLQVVFGTMLVWS
Sbjct:   270 PSEGWTTGGATVIIIGDNFFDGLQVVFGTMLVWS 303

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

MGI|MGI:894289 Ebf3 "early B cell factor 3" [Mus musculus (taxid:10090)]

 Score = 179 (68.1 bits), Expect = 3.9e-20, Sum P(2) = 3.9e-20
 Identities = 32/34 (94%), Positives = 34/34 (100%)

Query:    26 PSEGWTSGGATVIIVGDNFFDGLQVVFGTMLVWS 59
             PSEGWT+GGATVII+GDNFFDGLQVVFGTMLVWS
Sbjct:   270 PSEGWTTGGATVIIIGDNFFDGLQVVFGTMLVWS 303

GO:0003677 "DNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0046872 "metal ion binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

RGD|1304956 Ebf3 "early B-cell factor 3" [Rattus norvegicus (taxid:10116)]

 Score = 179 (68.1 bits), Expect = 3.9e-20, Sum P(2) = 3.9e-20
 Identities = 32/34 (94%), Positives = 34/34 (100%)

Query:    26 PSEGWTSGGATVIIVGDNFFDGLQVVFGTMLVWS 59
             PSEGWT+GGATVII+GDNFFDGLQVVFGTMLVWS
Sbjct:   270 PSEGWTTGGATVIIIGDNFFDGLQVVFGTMLVWS 303

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA;ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P56721	COLL_DROME	No assigned EC number	0.7090	0.8644	0.0886	yes	N/A
Q63398	COE1_RAT	No assigned EC number	0.5681	1.0	0.1010	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	59
cd01175	85	cd01175, IPT_COE, IPT domain of the COE family (Co	5e-18
cd11606	212	cd11606, COE_DBD, Colier/Olf/Early B-cell factor (	7e-11

>gnl|CDD|238580 cd01175, IPT_COE, IPT domain of the COE family (Col/Olf-1/EBF) of non-basic, helix-loop-helix (HLH)-containing transcription factors

 Score = 70.0 bits (171), Expect = 5e-18
 Identities = 32/34 (94%), Positives = 34/34 (100%)

Query: 26 PSEGWTSGGATVIIVGDNFFDGLQVVFGTMLVWS 59
          PSEGWT+GGATVII+GDNFFDGLQVVFGTMLVWS
Sbjct: 8  PSEGWTTGGATVIIIGDNFFDGLQVVFGTMLVWS 41

COE family proteins are all transcription factors and play an important role in variety of developmental processes. Mouse EBF is involved in the regulation of the early stages of B-cell differentiation, Drosophila collier is a regulator of the head patterning, and a related protein in Xenopus is involved in primary neurogenesis. All COE family members have a well conserved DNA binding domain that contains an atypical Zn finger motif. The function of the IPT domain is unknown. Length = 85

>gnl|CDD|212156 cd11606, COE_DBD, Colier/Olf/Early B-cell factor (EBF) DNA Binding Domain

 Score = 54.0 bits (130), Expect = 7e-11
 Identities = 19/25 (76%), Positives = 22/25 (88%)

Query: 1   MRRFQVVISTQVGVDGPLLAVSDNI 25
           MRRFQVV+ST V VDG +LAVSDN+
Sbjct: 173 MRRFQVVLSTTVNVDGHVLAVSDNM 197

COE_DBD is the amino-terminal DNA binding domain of the COE protein family. The COE transcription factor is a regulator of development in several organs and tissues that contain the DBD domain as well as IPT/TIG (immunoglobulin-like, Plexins, transcription factors/transcription factor immunoglobulin) and basic helix-loop-helix (bHLH) domains. COE has four members in mammals (COE1-4) with high sequence similarity at the amino-terminal region. COE_DBD requires a zinc ion to bind DNA and contains a zinc finger motif (H-X(3)-C-X(2)-C-X(5)-C) termed the zinc knuckle. COE is homo- or heterodimerized through the bHLH domain to bind DNA. COE1-4 each has a variant due to alternative splicing. However, this alternative splicing does not occur at the DBD domain. Length = 212

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	59
cd01175	85	IPT_COE IPT domain of the COE family (Col/Olf-1/EB	99.73
KOG3836|consensus	605		98.49
KOG3836|consensus	605		97.9
cd00603	90	IPT_PCSR IPT domain of Plexins and Cell Surface Re	97.48
cd00102	89	IPT Immunoglobulin-like fold, Plexins, Transcripti	97.4
PF01833	85	TIG: IPT/TIG domain; InterPro: IPR002909 This fami	96.97
smart00429	90	IPT ig-like, plexins, transcription factors.	96.45
cd01179	85	IPT_plexin_repeat2 Second repeat of the IPT domain	96.4
cd01180	94	IPT_plexin_repeat1 First repeat of the IPT domain	93.94
cd01178	101	IPT_NFAT IPT domain of the NFAT family of transcri	88.12
cd00602	101	IPT_TF IPT domain of eukaryotic transcription fact	86.48
cd01176	97	IPT_RBP-Jkappa IPT domain of the recombination sig	83.3

>cd01175 IPT_COE IPT domain of the COE family (Col/Olf-1/EBF) of non-basic, helix-loop-helix (HLH)-containing transcription factors

Probab=99.73  E-value=2.3e-18  Score=109.54  Aligned_cols=34  Identities=94%  Similarity=1.653  Sum_probs=33.5

Q ss_pred             CCCCceecCeEEEEecCccccceeeEEeeeEeeC
Q psy14529         26 PSEGWTSGGATVIIVGDNFFDGLQVVFGTMLVWS   59 (59)
Q Consensus        26 pseGW~tgG~tViiiG~nFf~GLqvvfG~~lvws   59 (59)
                      |+|||++||++|+|+|||||+||||+||++.+|+
T Consensus         8 P~eG~~tGGt~VtI~GenF~~gl~V~FG~~~~w~   41 (85)
T cd01175           8 PSEGWTTGGATVIIIGDNFFDGLQVVFGTMLVWS   41 (85)
T ss_pred             CCCCcccCCeEEEEECCCCCCCcEEEECCEeEEE
Confidence            9999999999999999999999999999999996

COE family proteins are all transcription factors and play an important role in variety of developmental processes. Mouse EBF is involved in the regulation of the early stages of B-cell differentiation, Drosophila collier is a regulator of the head patterning, and a related protein in Xenopus is involved in primary neurogenesis. All COE family members have a well conserved DNA binding domain that contains an atypical Zn finger motif. The function of the IPT domain is unknown.

>KOG3836|consensus

Probab=98.49  E-value=4.6e-08  Score=78.26  Aligned_cols=53  Identities=32%  Similarity=0.232  Sum_probs=50.8

Q ss_pred             CceEEEEEEeeeccCCceEEEecCC-------------------------------------------------------
Q psy14529          1 MRRFQVVISTQVGVDGPLLAVSDNI-------------------------------------------------------   25 (59)
Q Consensus         1 mRrfqV~vstt~~vdg~~LavSDnm-------------------------------------------------------   25 (59)
                      |||||+.+.+.+.+++..++.+|+|                                                       
T Consensus       248 ~~~~Q~~i~~~~~v~~~g~n~~~~als~~~~~~s~~~~~l~~~d~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~  327 (605)
T KOG3836|consen  248 MRRFQVLINGGVEVTLLGANFKDIALSTQCSEESTMVNYLPPSDNPGSVSVSITDPSETSDSNNSNSSPPTSSSTKAIFT  327 (605)
T ss_pred             cccccccccccceecccccchhhhhhcccccccccceeeccccccCCCceeeeccccccccccccccCCccCCCccccee
Confidence            7999999999999999999999988                                                       


Q ss_pred             --CCCCceecCeEEEEecCccccceeeEEe
Q psy14529         26 --PSEGWTSGGATVIIVGDNFFDGLQVVFG   53 (59)
Q Consensus        26 --pseGW~tgG~tViiiG~nFf~GLqvvfG   53 (59)
                        |++||..||..+.|+|.|||.||++.||
T Consensus       328 yvp~t~~q~~~~al~ivg~n~~~~l~~a~~  357 (605)
T KOG3836|consen  328 YVPSTDRQLIEYALQIVGLNMNGKLEDARN  357 (605)
T ss_pred             eecCCCceeeeeEEEEecccccCchhhhcC
Confidence              9999999999999999999999999998

>KOG3836|consensus

Probab=97.90  E-value=4.3e-06  Score=67.22  Aligned_cols=59  Identities=19%  Similarity=0.088  Sum_probs=54.4

Q ss_pred             CceEEEEEEe-eeccCCceEEEecCC-----------------------------------------CCCCceecCeEEE
Q psy14529          1 MRRFQVVIST-QVGVDGPLLAVSDNI-----------------------------------------PSEGWTSGGATVI   38 (59)
Q Consensus         1 mRrfqV~vst-t~~vdg~~LavSDnm-----------------------------------------pseGW~tgG~tVi   38 (59)
                      |+++|..+++ .+....+.|+++|++                                         |++.|..++.+..
T Consensus         9 ~~~iq~~l~~~~~~~~~~~l~~~~~n~l~~~v~n~~~~pld~~~~~l~~v~t~~~~~~~v~~~~~~~~~~ahfek~~p~~   88 (605)
T KOG3836|consen    9 IASIQGPLHRHVVFGRKEPLRTVYANPLDNIVINPQQLPLDLEVIGLPKVSTPRKNEFIVFNSKQLFPIRAHFEKDLPTR   88 (605)
T ss_pred             hhhccCccccCccccCCCcccchhcccccccccCcccccCChhhhccccccCcccccccccccccccchhhhcccCCCcc
Confidence            6789999999 899999999999998                                         6788888999999


Q ss_pred             EecCccccceeeEEeeeEeeC
Q psy14529         39 IVGDNFFDGLQVVFGTMLVWS   59 (59)
Q Consensus        39 iiG~nFf~GLqvvfG~~lvws   59 (59)
                      |+++|||+++|.+|+.|++|+
T Consensus        89 l~~~nffH~~~~~F~~m~ly~  109 (605)
T KOG3836|consen   89 LVCYNFFHKAQNGFVVMALYK  109 (605)
T ss_pred             ccccceecccccceEEEEeec
Confidence            999999999999999999985

>cd00603 IPT_PCSR IPT domain of Plexins and Cell Surface Receptors (PCSR) and related proteins

Probab=97.48  E-value=0.00014  Score=42.15  Aligned_cols=31  Identities=39%  Similarity=0.621  Sum_probs=28.6

Q ss_pred             CCCCceecCeEEEEecCccccc---eeeEEeeeE
Q psy14529         26 PSEGWTSGGATVIIVGDNFFDG---LQVVFGTML   56 (59)
Q Consensus        26 pseGW~tgG~tViiiG~nFf~G---LqvvfG~~l   56 (59)
                      |+.|+..||+.|.|.|.||.+.   ++|.||...
T Consensus         8 P~~g~~~Ggt~vtI~G~~f~~~~~~~~V~ig~~~   41 (90)
T cd00603           8 PSSGPLSGGTRLTITGSNLGSGSPRVRVTVGGVP   41 (90)
T ss_pred             CCCCCCCCCeEEEEEEECCCCCCceEEEEECCEE
Confidence            9999999999999999999998   899998753

This subgroup contains IPT domains of plexins, receptors, like the plasminogen-related growth factor receptors, the hepatocyte growth factor-scatter factors, and the macrophage-stimulating receptors and of fibrocystin. Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT_PCSR domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.

>cd00102 IPT Immunoglobulin-like fold, Plexins, Transcription factors (IPT)

Probab=97.40  E-value=0.0002  Score=40.57  Aligned_cols=30  Identities=53%  Similarity=0.856  Sum_probs=28.0

Q ss_pred             CCCCceecCeEEEEecCccccc--eeeEE-eee
Q psy14529         26 PSEGWTSGGATVIIVGDNFFDG--LQVVF-GTM   55 (59)
Q Consensus        26 pseGW~tgG~tViiiG~nFf~G--Lqvvf-G~~   55 (59)
                      |..|...||+.|.|.|+||-++  .+|.| |..
T Consensus         8 P~~g~~~GGt~itI~G~~f~~~~~~~v~~~g~~   40 (89)
T cd00102           8 PSSGPVSGGTEVTITGSNFGSGSNLRVTFGGGV   40 (89)
T ss_pred             CCcCCCCCCeEEEEEEECCCCCCcEEEEEeCCC
Confidence            9999999999999999999999  99999 654

IPTs are also known as Transcription factor ImmunoGlobin (TIG) domains. They are present in intracellular transcription factors, cell surface receptors (such as plexins and scatter factor receptors), as well as, cyclodextrin glycosyltransferase and similar enzymes. Although they are involved in DNA binding in transcription factors, their function in other proteins is unknown. In these transcription factors, IPTs form homo- or heterodimers with the exception of the nuclear factor of activated Tcells (NFAT) transcription factors which are mainly monomers.

>PF01833 TIG: IPT/TIG domain; InterPro: IPR002909 This family consists of a domain that has an immunoglobulin like fold

Probab=96.97  E-value=0.00046  Score=38.32  Aligned_cols=32  Identities=34%  Similarity=0.611  Sum_probs=29.3

Q ss_pred             CCCCceecCeEEEEecCcc---ccceeeEEeeeEe
Q psy14529         26 PSEGWTSGGATVIIVGDNF---FDGLQVVFGTMLV   57 (59)
Q Consensus        26 pseGW~tgG~tViiiG~nF---f~GLqvvfG~~lv   57 (59)
                      |+.|+..||..|.|.|.||   -+-+++.||....
T Consensus         8 P~~~~~~gg~~ItI~G~~f~~~~~~~~v~i~~~~~   42 (85)
T PF01833_consen    8 PNSGSISGGTNITITGSNFGSNSSNISVKIGGSQC   42 (85)
T ss_dssp             SSEEETTCTSEEEEEEESSESSSTTEEEEETTEEE
T ss_pred             CCeEecCCCEEEEEEEEeecccCCceEEEECCEee
Confidence            9999999999999999999   8899999987653

These domains are found in cell surface receptors such as Met and Ron as well as in intracellular transcription factors where it is involved in DNA binding. The Ron tyrosine kinase receptor shares with the members of its subfamily (Met and Sea) a unique functional feature: the control of cell dissociation, motility, and invasion of extracellular matrices (scattering) [].; GO: 0005515 protein binding; PDB: 3HRP_A 1UAD_D 3MLP_E 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A 7CGT_A 1CGU_A ....

>smart00429 IPT ig-like, plexins, transcription factors

Probab=96.45  E-value=0.0035  Score=36.16  Aligned_cols=28  Identities=29%  Similarity=0.426  Sum_probs=24.9

Q ss_pred             CCCCceecCeEEEEecCccccceeeEEe
Q psy14529         26 PSEGWTSGGATVIIVGDNFFDGLQVVFG   53 (59)
Q Consensus        26 pseGW~tgG~tViiiG~nFf~GLqvvfG   53 (59)
                      |+.|+..||+.|+|.|.||-++-++.+.
T Consensus         9 P~~g~~~GGt~iti~G~nf~~~~~~~~~   36 (90)
T smart00429        9 PTSGPVSGGTEITLCGKNLDSISVVFVE   36 (90)
T ss_pred             cCcCcCCCCeEEEEeeecCCcceEEEEE
Confidence            9999999999999999999887776553

>cd01179 IPT_plexin_repeat2 Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR)

Probab=96.40  E-value=0.0045  Score=36.55  Aligned_cols=30  Identities=37%  Similarity=0.606  Sum_probs=27.3

Q ss_pred             CCCCceecCeEEEEecCccccc--eeeEEeee
Q psy14529         26 PSEGWTSGGATVIIVGDNFFDG--LQVVFGTM   55 (59)
Q Consensus        26 pseGW~tgG~tViiiG~nFf~G--LqvvfG~~   55 (59)
                      |++|=..||++|.|.|.||-++  .+|.||..
T Consensus         8 P~~Gp~~GGT~vtI~G~~~~~~~~~~V~ig~~   39 (85)
T cd01179           8 PSYGPQSGGTRLTITGKHLNAGSSVRVTVGGQ   39 (85)
T ss_pred             CCCCCCCCCEEEEEEEECCCCCCeEEEEECCe
Confidence            9999999999999999999888  77888865

Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.

>cd01180 IPT_plexin_repeat1 First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR)

Probab=93.94  E-value=0.074  Score=32.11  Aligned_cols=30  Identities=30%  Similarity=0.372  Sum_probs=26.2

Q ss_pred             CCCCceecCeEEEEecCccccc-----eeeEEeee
Q psy14529         26 PSEGWTSGGATVIIVGDNFFDG-----LQVVFGTM   55 (59)
Q Consensus        26 pseGW~tgG~tViiiG~nFf~G-----LqvvfG~~   55 (59)
                      |..|=..||+.|+|-|.||-.+     .+|.+|..
T Consensus         8 P~~Gp~~GGT~vTI~G~nl~~~~~~~~~~V~ig~~   42 (94)
T cd01180           8 PLSGPLEGGTRLTICGSNLGLRKNDVRHGVRVGGV   42 (94)
T ss_pred             CCCCCCCCCEEEEEEEEcCCCCcccceeEEEECCE
Confidence            9999999999999999999988     46777754

Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.

>cd01178 IPT_NFAT IPT domain of the NFAT family of transcription factors

Probab=88.12  E-value=0.63  Score=30.21  Aligned_cols=28  Identities=29%  Similarity=0.572  Sum_probs=25.0

Q ss_pred             CCCceecCeEEEEecCccccceeeEEee
Q psy14529         27 SEGWTSGGATVIIVGDNFFDGLQVVFGT   54 (59)
Q Consensus        27 seGW~tgG~tViiiG~nFf~GLqvvfG~   54 (59)
                      +.|-..||..++++||||-...+|+|--
T Consensus        10 ~s~sv~GG~Ev~Ll~~k~~kDikV~F~E   37 (101)
T cd01178          10 NSCSVNGGEELFLTGKNFLKDSKVVFQE   37 (101)
T ss_pred             CceeecCCCEEEEEehhcCCCCEEEEEE
Confidence            4566899999999999999999999974

NFAT transcription complexes are a target of calcineurin, a calcium dependent phosphatase, and activate genes mainly involved in cell-cell-interaction.

>cd00602 IPT_TF IPT domain of eukaryotic transcription factors NF-kappaB/Rel, nuclear factor of activated Tcells (NFAT), and recombination signal J-kappa binding protein (RBP-Jkappa)

Probab=86.48  E-value=0.89  Score=28.94  Aligned_cols=28  Identities=29%  Similarity=0.522  Sum_probs=24.3

Q ss_pred             CCCceecCeEEEEecCcccc-ceeeEEee
Q psy14529         27 SEGWTSGGATVIIVGDNFFD-GLQVVFGT   54 (59)
Q Consensus        27 seGW~tgG~tViiiG~nFf~-GLqvvfG~   54 (59)
                      .+|-..||..++++++||-- .++|.|+.
T Consensus         9 ~s~~~~GG~ev~Ll~~k~~k~dikV~F~e   37 (101)
T cd00602           9 LSGSVNGGDEVFLLCDKVNKPDIKVWFGE   37 (101)
T ss_pred             CeeEcCCCcEEEEEecCCCCCCCEEEEEe
Confidence            35666799999999999866 99999997

The IPT domains in these proteins are involved in DNA binding. Most NF-kappaB/Rel proteins form homo- and heterodimers, while NFAT proteins are largely monomeric (with TonEBP being an exception). While the majority of sequence-specific DNA binding elements are found in the N-terminal domain, several are found in the IPT domain in loops adjacent to, and including, the linker region.

>cd01176 IPT_RBP-Jkappa IPT domain of the recombination signal Jkappa binding protein (RBP-Jkappa)

Probab=83.30  E-value=1.2  Score=29.25  Aligned_cols=22  Identities=36%  Similarity=0.576  Sum_probs=19.6

Q ss_pred             eEEEEecCccccceeeEEeeeE
Q psy14529         35 ATVIIVGDNFFDGLQVVFGTML   56 (59)
Q Consensus        35 ~tViiiG~nFf~GLqvvfG~~l   56 (59)
                      +.+-+.||||-..|+|-||...
T Consensus        20 amlEl~GenF~pnLkVWFG~ve   41 (97)
T cd01176          20 AMLELHGENFTPNLKVWFGDVE   41 (97)
T ss_pred             EEEEEecCcCCCCceEEECCcc
Confidence            6778899999999999999764

RBP-J kappa, was initially considered to be involved in V(D)J recombination because of its DNA binding specificity and structural similarity to site-specific recombinases known as the integrase family. Further studies indicated that RBP-J kappa functions as a repressor of transcription, via destabilization of the general transcription factor IID and recruitment of histone deacetylase complexes.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	59
3mlp_A	402	Early B-Cell Factor 1 (Ebf1) Bound To Dna Length =		5e-22
3n50_A	159	Human Early B-Cell Factor 3 (Ebf3) IptTIG AND HLHLH		5e-14
3muj_A	138	Early B-Cell Factor 3 (Ebf3) IptTIG AND DIMERIZATIO		6e-14
3mqi_A	96	Human Early B-Cell Factor 1 (Ebf1) IptTIG DOMAIN Le		1e-13
3mln_A	224	Dna Binding Domain Of Early B-Cell Factor 1 (Ebf1)		5e-05
3lyr_A	243	Human Early B-Cell Factor 1 (Ebf1) Dna-Binding Doma		4e-04

>pdb|3MLP|A Chain A, Early B-Cell Factor 1 (Ebf1) Bound To Dna Length = 402

Iteration: 1
 Score = 99.4 bits (246), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 50/88 (56%), Positives = 56/88 (63%), Gaps = 29/88 (32%)
Query: 1   MRRFQVVISTQVGVDGPLLAVSDNI-----------------------------PSEGWT 31
           MRRFQVV+ST V VDG +LAVSDN+                             PSEGWT
Sbjct: 185 MRRFQVVVSTTVNVDGHVLAVSDNMFVHNNSKHGRRARRLDPSEAATPCIKAISPSEGWT 244
Query: 32  SGGATVIIVGDNFFDGLQVVFGTMLVWS 59
           +GGATVII+GDNFFDGLQV+FGTMLVWS
Sbjct: 245 TGGATVIIIGDNFFDGLQVIFGTMLVWS 272

>pdb|3N50|A Chain A, Human Early B-Cell Factor 3 (Ebf3) IptTIG AND HLHLH DOMAINS Length = 159

Iteration: 1
 Score = 72.8 bits (177), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 32/34 (94%), Positives = 34/34 (100%)
Query: 26 PSEGWTSGGATVIIVGDNFFDGLQVVFGTMLVWS 59
          PSEGWT+GGATVII+GDNFFDGLQVVFGTMLVWS
Sbjct: 14 PSEGWTTGGATVIIIGDNFFDGLQVVFGTMLVWS 47

>pdb|3MUJ|A Chain A, Early B-Cell Factor 3 (Ebf3) IptTIG AND DIMERIZATION HELICES Length = 138

Iteration: 1
 Score = 72.4 bits (176), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 32/34 (94%), Positives = 34/34 (100%)
Query: 26 PSEGWTSGGATVIIVGDNFFDGLQVVFGTMLVWS 59
          PSEGWT+GGATVII+GDNFFDGLQVVFGTMLVWS
Sbjct: 13 PSEGWTTGGATVIIIGDNFFDGLQVVFGTMLVWS 46

>pdb|3MQI|A Chain A, Human Early B-Cell Factor 1 (Ebf1) IptTIG DOMAIN Length = 96

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 31/34 (91%), Positives = 34/34 (100%)
Query: 26 PSEGWTSGGATVIIVGDNFFDGLQVVFGTMLVWS 59
          PSEGWT+GGATVII+GDNFFDGLQV+FGTMLVWS
Sbjct: 14 PSEGWTTGGATVIIIGDNFFDGLQVIFGTMLVWS 47

>pdb|3MLN|A Chain A, Dna Binding Domain Of Early B-Cell Factor 1 (Ebf1) Bound To Dna (Crystal Form Ii) Length = 224

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/25 (76%), Positives = 22/25 (88%)
Query: 1   MRRFQVVISTQVGVDGPLLAVSDNI 25
           MRRFQVV+ST V VDG +LAVSDN+
Sbjct: 185 MRRFQVVVSTTVNVDGHVLAVSDNM 209

>pdb|3LYR|A Chain A, Human Early B-Cell Factor 1 (Ebf1) Dna-Binding Domain Length = 243

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/23 (78%), Positives = 20/23 (86%)
Query: 2   RRFQVVISTQVGVDGPLLAVSDN 24
           RRFQVV+ST V VDG +LAVSDN
Sbjct: 202 RRFQVVVSTTVNVDGHVLAVSDN 224
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	59
3mlp_A	402	Transcription factor COE1; transcription factor, p	1e-14
3muj_A	138	Transcription factor COE3; immunoglobulin like fol	1e-09
3lyr_A	243	Transcription factor COE1; immunoglobulin (IG)-lik	4e-06
3mln_A	224	Transcription factor COE1; transcription factor, p	4e-06

>3mlp_A Transcription factor COE1; transcription factor, pseudo-IG-fold, TIG-domain, IPT-domain loop-helix; HET: DNA CIT; 2.80A {Mus musculus} PDB: 3n50_A Length = 402

 Score = 64.9 bits (157), Expect = 1e-14
 Identities = 50/88 (56%), Positives = 55/88 (62%), Gaps = 29/88 (32%)

Query: 1   MRRFQVVISTQVGVDGPLLAVSDN-----------------------------IPSEGWT 31
           MRRFQVV+ST V VDG +LAVSDN                              PSEGWT
Sbjct: 185 MRRFQVVVSTTVNVDGHVLAVSDNMFVHNNSKHGRRARRLDPSEAATPCIKAISPSEGWT 244

Query: 32  SGGATVIIVGDNFFDGLQVVFGTMLVWS 59
           +GGATVII+GDNFFDGLQV+FGTMLVWS
Sbjct: 245 TGGATVIIIGDNFFDGLQVIFGTMLVWS 272

>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A Length = 138

 Score = 48.9 bits (116), Expect = 1e-09
 Identities = 32/35 (91%), Positives = 34/35 (97%)

Query: 25 IPSEGWTSGGATVIIVGDNFFDGLQVVFGTMLVWS 59
           PSEGWT+GGATVII+GDNFFDGLQVVFGTMLVWS
Sbjct: 12 SPSEGWTTGGATVIIIGDNFFDGLQVVFGTMLVWS 46

>3lyr_A Transcription factor COE1; immunoglobulin (IG)-like domain, structural genomics, struct genomics consortium, SGC, activator, developmental protein; 2.51A {Homo sapiens} Length = 243

 Score = 40.6 bits (94), Expect = 4e-06
 Identities = 19/25 (76%), Positives = 22/25 (88%)

Query: 1   MRRFQVVISTQVGVDGPLLAVSDNI 25
           MRRFQVV+ST V VDG +LAVSDN+
Sbjct: 201 MRRFQVVVSTTVNVDGHVLAVSDNM 225

>3mln_A Transcription factor COE1; transcription factor, pseudo-IG-fold, Zn-finger, Zn-knuckle; HET: DNA; 2.40A {Mus musculus} PDB: 3mlo_A* Length = 224

 Score = 40.6 bits (94), Expect = 4e-06
 Identities = 19/25 (76%), Positives = 22/25 (88%)

Query: 1   MRRFQVVISTQVGVDGPLLAVSDNI 25
           MRRFQVV+ST V VDG +LAVSDN+
Sbjct: 185 MRRFQVVVSTTVNVDGHVLAVSDNM 209

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	59
3mlp_A	402	Transcription factor COE1; transcription factor, p	99.96
3muj_A	138	Transcription factor COE3; immunoglobulin like fol	99.66
3mln_A	224	Transcription factor COE1; transcription factor, p	98.92
3lyr_A	243	Transcription factor COE1; immunoglobulin (IG)-lik	98.72
2cxk_A	95	Camta1, calmodulin binding transcription activator	93.81
1u36_A	106	DNA-binding, nuclear factor NF-kappa-B P105 subuni	91.01
1ikn_C	119	P50D, protein (NF-kappa-B P50D subunit); transcrip	91.0
2yrp_A	114	Nuclear factor of activated T-cells, cytoplasmic 4	88.78
1ikn_A	286	P65, protein (NF-kappa-B P65 subunit); transcripti	88.62
1imh_C	281	NF-AT5, tonebp, nuclear factor of activated T cell	87.4
1nfk_A	325	Protein (nuclear factor kappa-B (NF-KB)); NF-KB P5	86.49
2uzx_B	727	Hepatocyte growth factor receptor; signaling prote	85.72
1svc_P	365	Protein (nuclear factor kappa-B (NF-KB)); DNA-bind	83.58
3orj_A	439	Sugar-binding protein; structural genomics, joint	82.28
1my7_A	114	NF-kappab P65 (RELA) subunit; immunoglobulin, IG,	81.09

>3mlp_A Transcription factor COE1; transcription factor, pseudo-IG-fold, TIG-domain, IPT-domain loop-helix; HET: DNA CIT; 2.80A {Mus musculus} PDB: 3n50_A

Probab=99.96  E-value=2.1e-30  Score=195.99  Aligned_cols=59  Identities=85%  Similarity=1.403  Sum_probs=58.2

Q ss_pred             CceEEEEEEeeeccCCceEEEecCC-----------------------------CCCCceecCeEEEEecCccccceeeE
Q psy14529          1 MRRFQVVISTQVGVDGPLLAVSDNI-----------------------------PSEGWTSGGATVIIVGDNFFDGLQVV   51 (59)
Q Consensus         1 mRrfqV~vstt~~vdg~~LavSDnm-----------------------------pseGW~tgG~tViiiG~nFf~GLqvv   51 (59)
                      ||||||+|||++++|||+|||||||                             |+|||++||++|+|+|+|||+||||+
T Consensus       185 mRrfqv~vstt~~~~g~~lavSdnmfvHNnSkHGRra~r~~~s~~~tP~IkaIsPnEG~~tGG~tV~IiGenFf~GLQVv  264 (402)
T 3mlp_A          185 MRRFQVVVSTTVNVDGHVLAVSDNMFVHNNSKHGRRARRLDPSEAATPCIKAISPSEGWTTGGATVIIIGDNFFDGLQVI  264 (402)
T ss_dssp             CCCEEEEEESSSCCSSCCSEEEEEEEEECCTTTTBCCCCCCTTTTSCCEEEECSSCEECTTCCCEEEEEEECCCTTCEEE
T ss_pred             ceeEEEEEeccccCCCceeeccCCceeecccccccccccCCcccCCCcceEEecCCCCCccCCeEEEEeCCCcccCCEEE
Confidence            8999999999999999999999999                             99999999999999999999999999


Q ss_pred             EeeeEeeC
Q psy14529         52 FGTMLVWS   59 (59)
Q Consensus        52 fG~~lvws   59 (59)
                      ||++++|+
T Consensus       265 FGtt~vWs  272 (402)
T 3mlp_A          265 FGTMLVWS  272 (402)
T ss_dssp             ETTEEECE
T ss_pred             EccEeeee
Confidence            99999995

>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A

Probab=99.66  E-value=9.9e-18  Score=112.55  Aligned_cols=34  Identities=94%  Similarity=1.653  Sum_probs=33.4

Q ss_pred             CCCCceecCeEEEEecCccccceeeEEeeeEeeC
Q psy14529         26 PSEGWTSGGATVIIVGDNFFDGLQVVFGTMLVWS   59 (59)
Q Consensus        26 pseGW~tgG~tViiiG~nFf~GLqvvfG~~lvws   59 (59)
                      |+|||++||++|+|+|+|||+||||+||++++|+
T Consensus        13 P~eG~~~GG~~V~I~G~nF~~GlqV~FG~t~~w~   46 (138)
T 3muj_A           13 PSEGWTTGGATVIIIGDNFFDGLQVVFGTMLVWS   46 (138)
T ss_dssp             SSEEETTCCCEEEEEEESCCTTCEEEETTEEECE
T ss_pred             CCCCCccCCeEEEEeCCCcccCCEEEECCeeeee
Confidence            9999999999999999999999999999999995

>3mln_A Transcription factor COE1; transcription factor, pseudo-IG-fold, Zn-finger, Zn-knuckle; HET: DNA; 2.40A {Mus musculus} PDB: 3mlo_A*

Probab=98.92  E-value=4.2e-10  Score=80.43  Aligned_cols=25  Identities=76%  Similarity=1.068  Sum_probs=24.7

Q ss_pred             CceEEEEEEeeeccCCceEEEecCC
Q psy14529          1 MRRFQVVISTQVGVDGPLLAVSDNI   25 (59)
Q Consensus         1 mRrfqV~vstt~~vdg~~LavSDnm   25 (59)
                      ||||||+|||++++|||+|||||||
T Consensus       185 mRrFqv~istt~~~dg~vlavSdnm  209 (224)
T 3mln_A          185 MRRFQVVVSTTVNVDGHVLAVSDNM  209 (224)
T ss_dssp             CCCEEEEEESSSCSSSSEEEECCCB
T ss_pred             ceeeEEEEeeccccCCCeeeccCCc
Confidence            8999999999999999999999999

>3lyr_A Transcription factor COE1; immunoglobulin (IG)-like domain, structural genomics, struct genomics consortium, SGC, activator, developmental protein; 2.51A {Homo sapiens}

Probab=98.72  E-value=5.3e-09  Score=75.50  Aligned_cols=25  Identities=76%  Similarity=1.068  Sum_probs=24.7

Q ss_pred             CceEEEEEEeeeccCCceEEEecCC
Q psy14529          1 MRRFQVVISTQVGVDGPLLAVSDNI   25 (59)
Q Consensus         1 mRrfqV~vstt~~vdg~~LavSDnm   25 (59)
                      ||||||+|||+.+++||+|||||||
T Consensus       201 ~RrFqV~Istt~~vdG~vLavSdnm  225 (243)
T 3lyr_A          201 MRRFQVVVSTTVNVDGHVLAVSDNM  225 (243)
T ss_dssp             CCCEEEEEESSSCTTSSEEEECCCB
T ss_pred             ceeeEEEEeeccccCCCeeeccCCc
Confidence            8999999999999999999999999

>2cxk_A Camta1, calmodulin binding transcription activator 1; structural genomics, TIG/IPT domain, NPPSFA; 1.85A {Homo sapiens} SCOP: b.1.18.1

Probab=93.81  E-value=0.018  Score=34.89  Aligned_cols=40  Identities=23%  Similarity=0.309  Sum_probs=31.6

Q ss_pred             ceEEEecCCCCCCceecCeEEEEecCccccc--eeeEEeeeE
Q psy14529         17 PLLAVSDNIPSEGWTSGGATVIIVGDNFFDG--LQVVFGTML   56 (59)
Q Consensus        17 ~~LavSDnmpseGW~tgG~tViiiG~nFf~G--LqvvfG~~l   56 (59)
                      .++.|.|=-|+.|-..||+.|+|.|.++=+|  .++.||...
T Consensus         5 ~~~~Itd~sP~~gp~sGGTkv~I~G~~L~~gs~~~~~fG~~~   46 (95)
T 2cxk_A            5 SSGMVTDYSPEWSYPEGGVKVLITGPWQEASNNYSCLFDQIS   46 (95)
T ss_dssp             CCSCCCEEECSEECTTCCCEEEEESSCCCCSSCEEEEETTEE
T ss_pred             CcEEEEEECCCcccCCCCEEEEEEeECCCCCccEEEEECCEE
Confidence            3445555559999999999999999877655  889999864

>1u36_A DNA-binding, nuclear factor NF-kappa-B P105 subunit; transcription factor, NF-KB, dimerization domain, intertwined folding; 1.89A {Mus musculus} SCOP: b.1.18.1 PDB: 1u3z_A 1u3y_A 3jv4_B 1bfs_A 1u3j_A 1u42_A 1u41_A 1nfi_B

Probab=91.01  E-value=0.11  Score=32.67  Aligned_cols=26  Identities=27%  Similarity=0.533  Sum_probs=22.8

Q ss_pred             CCceecCeEEEEecCccc-cceeeEEe
Q psy14529         28 EGWTSGGATVIIVGDNFF-DGLQVVFG   53 (59)
Q Consensus        28 eGW~tgG~tViiiG~nFf-~GLqvvfG   53 (59)
                      .|-.+||..|+++||||- +..+|+|=
T Consensus        13 s~~v~GG~Ev~Llc~kv~K~dikV~F~   39 (106)
T 1u36_A           13 AGCVTGGEEIWLLCDKVQKDDIQIRFY   39 (106)
T ss_dssp             EEETTCCCEEEEEESCCCTTSCEEEEE
T ss_pred             ccccCCCCEEEEEeccccCCCCEEEEE
Confidence            355689999999999999 69999995

>1ikn_C P50D, protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Mus musculus} SCOP: b.1.18.1

Probab=91.00  E-value=0.12  Score=33.24  Aligned_cols=27  Identities=26%  Similarity=0.525  Sum_probs=23.2

Q ss_pred             CCceecCeEEEEecCccc-cceeeEEee
Q psy14529         28 EGWTSGGATVIIVGDNFF-DGLQVVFGT   54 (59)
Q Consensus        28 eGW~tgG~tViiiG~nFf-~GLqvvfG~   54 (59)
                      .|-.+||..|+++||||- +..+|+|=.
T Consensus        13 s~~v~GG~Ev~Llc~kv~K~dikV~F~e   40 (119)
T 1ikn_C           13 AGCVTGGEEIYLLCDKVQKDDIQIRFYE   40 (119)
T ss_dssp             EEETTCCCEEEEEESCCCTTSEEEEEEE
T ss_pred             ccccCCCCEEEEEeccccCCCCEEEEEE
Confidence            355789999999999999 699999953

>2yrp_A Nuclear factor of activated T-cells, cytoplasmic 4; beta-sandwich, immunoglobulin-like fold, TIG domain, IPT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=88.78  E-value=0.2  Score=32.13  Aligned_cols=28  Identities=32%  Similarity=0.541  Sum_probs=24.2

Q ss_pred             CCCceecCeEEEEecCccccceeeEEee
Q psy14529         27 SEGWTSGGATVIIVGDNFFDGLQVVFGT   54 (59)
Q Consensus        27 seGW~tgG~tViiiG~nFf~GLqvvfG~   54 (59)
                      ..|-..||..++++||||-...+|+|=.
T Consensus        17 ~s~~v~GG~Ev~Ll~~k~~kd~kV~F~E   44 (114)
T 2yrp_A           17 SACSVRGGEELVLTGSNFLPDSKVVFIE   44 (114)
T ss_dssp             SCEETTCCSEEEEEEESCCTTCEEEEEC
T ss_pred             cccccCCCCEEEEEecccCCCCEEEEEE
Confidence            4456789999999999999899999953

>1ikn_A P65, protein (NF-kappa-B P65 subunit); transcription factor, IKB/NFKB complex; 2.30A {Mus musculus} SCOP: b.1.18.1 b.2.5.3 PDB: 1nfi_A 2ram_A* 1ram_A* 2i9t_A 1lei_A* 1le9_A 1le5_A* 1vkx_A* 3gut_A

Probab=88.62  E-value=0.55  Score=33.91  Aligned_cols=48  Identities=27%  Similarity=0.466  Sum_probs=35.7

Q ss_pred             EEEEEEeeeccCCceEE----EecCC-----------------CCCCceecCeEEEEecCccc-cceeeEEee
Q psy14529          4 FQVVISTQVGVDGPLLA----VSDNI-----------------PSEGWTSGGATVIIVGDNFF-DGLQVVFGT   54 (59)
Q Consensus         4 fqV~vstt~~vdg~~La----vSDnm-----------------pseGW~tgG~tViiiG~nFf-~GLqvvfG~   54 (59)
                      |||.+-..   +|..+.    +|+.+                 -..|-.+||..|+++||||- +..+|+|=.
T Consensus       143 Fq~~i~~~---~G~~~~L~pV~S~PI~~~ks~~~~eL~I~r~s~~sg~v~GG~Ev~Llc~kv~K~di~V~F~e  212 (286)
T 1ikn_A          143 FQVTVRDP---AGRPLLLTPVLSHPIFDNRAPNTAELKICRVNRNSGSCLGGDEIFLLCDKVQKEDIEVYFTG  212 (286)
T ss_dssp             EEEEEECS---SSSEEECCCEECCCEECCCC--CCCCCEEEESCSEEETTCCCEEEEEESCCCTTSCEEEEEE
T ss_pred             EEEEEECC---CCCEEEeCCeEecccccCCCCCCCCCeEEEecCCccccCCCCEEEEEecccccCCCEEEEec
Confidence            77777542   465443    46666                 34578899999999999998 699999954

>1imh_C NF-AT5, tonebp, nuclear factor of activated T cells 5; beta barrel, protein-DNA complex, double helix, DNA encirclement, transcription/DNA complex; 2.86A {Homo sapiens} SCOP: b.1.18.1 b.2.5.3

Probab=87.40  E-value=0.45  Score=34.26  Aligned_cols=48  Identities=33%  Similarity=0.557  Sum_probs=35.9

Q ss_pred             EEEEEEeeeccCC---ceEEEecCC---------------CCCCceecCeEEEEecCccccceeeEEee
Q psy14529          4 FQVVISTQVGVDG---PLLAVSDNI---------------PSEGWTSGGATVIIVGDNFFDGLQVVFGT   54 (59)
Q Consensus         4 fqV~vstt~~vdg---~~LavSDnm---------------pseGW~tgG~tViiiG~nFf~GLqvvfG~   54 (59)
                      |||.+--.   +|   .|-.+|+.+               -..|-.+||..|+++||||-...+|+|=-
T Consensus       152 F~v~i~~~---~G~~~~L~~~S~PI~d~k~~~~l~I~r~s~~sg~v~GG~Ev~Llc~kv~KdikVrF~E  217 (281)
T 1imh_C          152 FRVNIMRK---DGSTLTLQTPSSPILCTQPAGVPEILKKSLHSCSVKGEEEVFLIGKNFLKGTKVIFQE  217 (281)
T ss_dssp             EEEEEECS---SSCEEEEEEECCCEECSCCCCCCEEEEESCCEEETTCCCEEEEEEECCCTTCEEEEES
T ss_pred             EEEEEECC---CCCEEEccCcCcceecCCCCCCCeEEEEecCccccCCCcEEEEEeeccCCCcEEEEEE
Confidence            77777432   44   344466666               35578899999999999999889999954

>1nfk_A Protein (nuclear factor kappa-B (NF-KB)); NF-KB P50, complex (transcription factor/DNA), transcription/DNA complex; HET: DNA; 2.30A {Mus musculus} SCOP: b.1.18.1 b.2.5.3 PDB: 2v2t_B 1ooa_A 1lei_B* 1le9_B 1le5_B* 2i9t_B 1vkx_B* 3gut_B 2o61_B

Probab=86.49  E-value=0.74  Score=33.80  Aligned_cols=47  Identities=30%  Similarity=0.574  Sum_probs=36.5

Q ss_pred             EEEEEEeeeccCCce---E--EEecCC-----------------CCCCceecCeEEEEecCccc-cceeeEEe
Q psy14529          4 FQVVISTQVGVDGPL---L--AVSDNI-----------------PSEGWTSGGATVIIVGDNFF-DGLQVVFG   53 (59)
Q Consensus         4 fqV~vstt~~vdg~~---L--avSDnm-----------------pseGW~tgG~tViiiG~nFf-~GLqvvfG   53 (59)
                      |||-+--.   +|.+   |  -+|+.+                 -..|-.+||..|++++|+|- +..+|+|=
T Consensus       176 Fq~fl~~~---~G~~t~~l~pV~S~PI~d~k~~~a~eL~I~r~s~~sg~v~GG~Ev~LLc~kv~K~Di~VrF~  245 (325)
T 1nfk_A          176 FTAFLPDS---TGSFTRRLEPVVSDAIYDSKAPNASNLKIVRMDRTAGCVTGGEEIYLLCDKVQKDDIQIRFY  245 (325)
T ss_dssp             EEEEEECS---SSCEEEECCCEECCCEECTTSTTSCCCCEEEESCSCEESSCCCEEEEEESCCCTTTEEEEEE
T ss_pred             EEEEEECC---CCcEeeecCCeEecceecCCCCCCCCCeEEEecCCccccCCCCEEEEEecccccCCCEEEEE
Confidence            77776543   5653   3  567766                 56789999999999999999 69999994

>2uzx_B Hepatocyte growth factor receptor; signaling protein/receptor, leucine rich repeat, receptor ectodomain, signaling protein, ATP-binding; 2.8A {Homo sapiens} PDB: 2uzy_B 1shy_B 1ssl_A

Probab=85.72  E-value=0.15  Score=39.46  Aligned_cols=30  Identities=23%  Similarity=0.481  Sum_probs=0.0

Q ss_pred             CCCCceecCeEEEEecCccccc--eeeEEeee
Q psy14529         26 PSEGWTSGGATVIIVGDNFFDG--LQVVFGTM   55 (59)
Q Consensus        26 pseGW~tgG~tViiiG~nFf~G--LqvvfG~~   55 (59)
                      |+.|...||++|+|.|.||-.+  ++|.||..
T Consensus       643 P~~G~~sGGt~ITI~G~nf~~~~~~~V~ig~~  674 (727)
T 2uzx_B          643 PKYGPMAGGTLLTLTGNYLNSGNSRHISIGGK  674 (727)
T ss_dssp             --------------------------------
T ss_pred             CCccccCCCEEEEEEEECCCCCCceEEEECCE
Confidence            9999999999999999999777  45777753

>1svc_P Protein (nuclear factor kappa-B (NF-KB)); DNA-binding, transcription regulation, activator, nuclear protein, phosphorylation, repeat, DNA; HET: DNA; 2.60A {Homo sapiens} SCOP: b.1.18.1 b.2.5.3

Probab=83.58  E-value=1.3  Score=33.07  Aligned_cols=48  Identities=29%  Similarity=0.562  Sum_probs=36.8

Q ss_pred             EEEEEEeeeccCCce---E--EEecCC-----------------CCCCceecCeEEEEecCccc-cceeeEEee
Q psy14529          4 FQVVISTQVGVDGPL---L--AVSDNI-----------------PSEGWTSGGATVIIVGDNFF-DGLQVVFGT   54 (59)
Q Consensus         4 fqV~vstt~~vdg~~---L--avSDnm-----------------pseGW~tgG~tViiiG~nFf-~GLqvvfG~   54 (59)
                      |||-+--.   +|.+   |  -+|+.+                 -..|-.+||..|++++|+|- +..+|+|=.
T Consensus       216 Fqafl~~~---~G~~t~~l~pV~S~PI~d~K~~~a~eL~I~R~s~~sgsv~GG~Ev~LLc~Kv~K~DikVrF~E  286 (365)
T 1svc_P          216 FTAFLPDS---TGSFTRRLEPVVSDAIYDSKAPNASNLKIVRMDRTAGCVTGGEEIYLLCDKVQKDDIQIRFYE  286 (365)
T ss_dssp             EEEEEECS---SSCEEEECCCEEEEEEECTTSGGGCCCCEEEESCSEEETTCCCEEEEEESSCCGGGCEEEEEE
T ss_pred             EEEEEECC---CCcEeeecCCeEecceecCCCCCCCCCeEEEecCCccccCCCCEEEEEecccccCCCEEEEEE
Confidence            77766543   5653   2  567766                 56688999999999999998 699999954

>3orj_A Sugar-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 2.16A {Bacteroides ovatus}

Probab=82.28  E-value=1  Score=34.65  Aligned_cols=24  Identities=25%  Similarity=0.423  Sum_probs=21.6

Q ss_pred             eecCeEEEEecCccccceeeEEee
Q psy14529         31 TSGGATVIIVGDNFFDGLQVVFGT   54 (59)
Q Consensus        31 ~tgG~tViiiG~nFf~GLqvvfG~   54 (59)
                      ...|.+|.|.|+||.+..+|.|+.
T Consensus       124 ~~aGd~VTItGsNF~~iskV~FgG  147 (439)
T 3orj_A          124 PNVGEPIIVYGSGLTEIAKVVFPG  147 (439)
T ss_dssp             CCTTCEEEEEEECCTTCCEEEETT
T ss_pred             CCCCCEEEEEccCCCceeEEEECC
Confidence            367899999999999999999983

>1my7_A NF-kappab P65 (RELA) subunit; immunoglobulin, IG, beta-sandwich, beta-sheet, homodimerdna- binding, transcription regulation, activator; 1.49A {Mus musculus} SCOP: b.1.18.1 PDB: 1my5_A 1bft_A

Probab=81.09  E-value=0.83  Score=29.19  Aligned_cols=27  Identities=22%  Similarity=0.441  Sum_probs=23.0

Q ss_pred             CCceecCeEEEEecCcccc-ceeeEEee
Q psy14529         28 EGWTSGGATVIIVGDNFFD-GLQVVFGT   54 (59)
Q Consensus        28 eGW~tgG~tViiiG~nFf~-GLqvvfG~   54 (59)
                      .|-..||..|+++||||-. ..+|+|=.
T Consensus        13 sg~v~GG~Ev~LLc~kv~K~Di~VrF~e   40 (114)
T 1my7_A           13 SGSCLGGDEIFLLCDKVQKEDIEVYFTG   40 (114)
T ss_dssp             EEETTCCCEEEEEESCCCTTSCEEEEEE
T ss_pred             ceecCCCcEEEEEecccccCCCEEEEEc
Confidence            4557899999999999985 89999954

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	59
d1p7hl1	103	b.1.18.1 (L:576-678) T-cell transcription factor N	9e-06

>d1p7hl1 b.1.18.1 (L:576-678) T-cell transcription factor NFAT1 (NFATC2) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain
domain: T-cell transcription factor NFAT1 (NFATC2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (86), Expect = 9e-06
 Identities = 10/33 (30%), Positives = 13/33 (39%)

Query: 21 VSDNIPSEGWTSGGATVIIVGDNFFDGLQVVFG 53
          V           GG  +I+ G NF    +VVF 
Sbjct: 5  VERQDTDSCLVYGGQQMILTGQNFTSESKVVFT 37

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	59
d1p7hl1	103	T-cell transcription factor NFAT1 (NFATC2) {Human	98.06
d2cxka1	82	Calmodulin binding transcription activator 1 {Huma	97.6
d3brda1	119	DNA-binding protein LAG-1 (CSL) {Caenorhabditis el	95.4
d1qhoa1	81	Five domain "maltogenic" alpha-amylase (glucan 1,4	92.93
d3bmva1	83	Cyclomaltodextrin glycanotransferase, domain D {Th	92.34
d1cyga1	83	Cyclomaltodextrin glycanotransferase, domain D {Ba	92.09
d1cxla1	87	Cyclomaltodextrin glycanotransferase, domain D {Ba	90.74
d1uadc_	92	Exocyst complex component Sec5, Ral-binding domain	90.14
d1u36a_	104	p50 subunit of NF-kappa B transcription factor {Hu	87.39
d1a3qa1	101	p52 subunit of NF-kappa B (NFKB) {Human (Homo sapi	86.12
d1imhc1	101	T-cell transcription factor NFAT5 (TONEBP) {Human	84.95
d1my7a_	107	p65 subunit of NF-kappa B (NFKB), dimerization dom	81.42

>d1p7hl1 b.1.18.1 (L:576-678) T-cell transcription factor NFAT1 (NFATC2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain
domain: T-cell transcription factor NFAT1 (NFATC2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=9.4e-07  Score=53.35  Aligned_cols=30  Identities=30%  Similarity=0.490  Sum_probs=28.7

Q ss_pred             CCCCceecCeEEEEecCccccceeeEEeee
Q psy14529         26 PSEGWTSGGATVIIVGDNFFDGLQVVFGTM   55 (59)
Q Consensus        26 pseGW~tgG~tViiiG~nFf~GLqvvfG~~   55 (59)
                      |+.|...||..|+|+|+||..+++|+||.+
T Consensus        10 ~~sgpv~GG~ev~llg~~f~~~~~V~F~e~   39 (103)
T d1p7hl1          10 TDSCLVYGGQQMILTGQNFTSESKVVFTEK   39 (103)
T ss_dssp             CSEEETTCCCEEEEEEESCCSSCEEEEEEE
T ss_pred             CCCcccCCCcEEEEEecccCCCCEEEEEec
Confidence            899999999999999999999999999965

>d2cxka1 b.1.18.1 (A:872-953) Calmodulin binding transcription activator 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain
domain: Calmodulin binding transcription activator 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=1.5e-05  Score=44.32  Aligned_cols=32  Identities=25%  Similarity=0.425  Sum_probs=28.2

Q ss_pred             CCCCceecCeEEEEecCccccc--eeeEEeeeEe
Q psy14529         26 PSEGWTSGGATVIIVGDNFFDG--LQVVFGTMLV   57 (59)
Q Consensus        26 pseGW~tgG~tViiiG~nFf~G--LqvvfG~~lv   57 (59)
                      |+.|.+.||+.|.|.|.||-.+  +.+.||...+
T Consensus         7 P~~G~~~GGt~V~I~G~~f~~~~~~~c~fG~~~~   40 (82)
T d2cxka1           7 PEWSYPEGGVKVLITGPWQEASNNYSCLFDQISV   40 (82)
T ss_dssp             CSEECTTCCCEEEEESSCCCCSSCEEEEETTEEE
T ss_pred             CCceeCCCCEEEEEEEccccccceEEEEEEeeec
Confidence            9999999999999999999765  6788998754

>d3brda1 b.1.18.1 (A:542-660) DNA-binding protein LAG-1 (CSL) {Caenorhabditis elegans [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain
domain: DNA-binding protein LAG-1 (CSL)
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.40  E-value=0.002  Score=40.68  Aligned_cols=29  Identities=21%  Similarity=0.255  Sum_probs=26.6

Q ss_pred             CCCCceecCeEEEEecCccccceeeEEeeeE
Q psy14529         26 PSEGWTSGGATVIIVGDNFFDGLQVVFGTML   56 (59)
Q Consensus        26 pseGW~tgG~tViiiG~nFf~GLqvvfG~~l   56 (59)
                      |++|=..||-+|.  |+||..+|+|.||...
T Consensus        29 pngG~~~~~lEvt--G~nF~~~L~V~FGd~~   57 (119)
T d3brda1          29 VDGHGEASRVELH--GRDFKPNLKVWFGATP   57 (119)
T ss_dssp             EECSGGGCEEEEE--EECCCTTEEEEETTEE
T ss_pred             cCCCCcccEEEEE--CcCCCCCcEEEECCcc
Confidence            8999999998888  9999999999999864

>d1qhoa1 b.1.18.2 (A:496-576) Five domain "maltogenic" alpha-amylase (glucan 1,4-alpha-maltohydrolase), domain D {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Five domain "maltogenic" alpha-amylase (glucan 1,4-alpha-maltohydrolase), domain D
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.93  E-value=0.023  Score=30.89  Aligned_cols=27  Identities=37%  Similarity=0.524  Sum_probs=21.7

Q ss_pred             CCCCceecCeEEEEecCccccce-eeEEee
Q psy14529         26 PSEGWTSGGATVIIVGDNFFDGL-QVVFGT   54 (59)
Q Consensus        26 pseGW~tgG~tViiiG~nFf~GL-qvvfG~   54 (59)
                      |..|  .||++|.|.|.||-++. .|.||.
T Consensus        11 P~~g--~~Gt~VtI~G~~F~~~~~~v~~g~   38 (81)
T d1qhoa1          11 PNMG--IPGNVVTIDGKGFGTTQGTVTFGG   38 (81)
T ss_dssp             SSEE--CTTCEEEEEEECCCSSCCEEEETT
T ss_pred             CCCC--CCCCEEEEEEECCCCCCeEEEECC
Confidence            8888  48999999999998876 455554

>d3bmva1 b.1.18.2 (A:496-578) Cyclomaltodextrin glycanotransferase, domain D {Thermoanaerobacterium [TaxId: 28895]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Cyclomaltodextrin glycanotransferase, domain D
species: Thermoanaerobacterium [TaxId: 28895]

Probab=92.34  E-value=0.029  Score=30.97  Aligned_cols=29  Identities=34%  Similarity=0.499  Sum_probs=23.2

Q ss_pred             CCCCceecCeEEEEecCccccc-eeeEEeeeE
Q psy14529         26 PSEGWTSGGATVIIVGDNFFDG-LQVVFGTML   56 (59)
Q Consensus        26 pseGW~tgG~tViiiG~nFf~G-LqvvfG~~l   56 (59)
                      |++|  .+|.+|.|-|.||.+. .+|.||...
T Consensus        11 P~~g--~~Gt~VtI~G~~F~~~~~~V~ig~~~   40 (83)
T d3bmva1          11 PTMT--KAGQTITIDGRGFGTTSGQVLFGSTA   40 (83)
T ss_dssp             CSEE--CTTCEEEEEEECCCSSCCEEEETTEE
T ss_pred             CCCC--CCCCEEEEEecCCCCCcceEEECCEE
Confidence            8888  4689999999999654 588888653

>d1cyga1 b.1.18.2 (A:492-574) Cyclomaltodextrin glycanotransferase, domain D {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Cyclomaltodextrin glycanotransferase, domain D
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.09  E-value=0.033  Score=30.60  Aligned_cols=28  Identities=39%  Similarity=0.510  Sum_probs=22.5

Q ss_pred             CCCCceecCeEEEEecCccc-cceeeEEeee
Q psy14529         26 PSEGWTSGGATVIIVGDNFF-DGLQVVFGTM   55 (59)
Q Consensus        26 pseGW~tgG~tViiiG~nFf-~GLqvvfG~~   55 (59)
                      |+.|  .+|+.|.|.|.||- +..+|.||..
T Consensus        11 P~~g--~~Gt~VtI~G~~F~~~~~~V~ig~~   39 (83)
T d1cyga1          11 PMMG--QVGHQVTIDGEGFGTNTGTVKFGTT   39 (83)
T ss_dssp             CSEE--CTTCEEEEEEECCCSSCCEEEETTE
T ss_pred             CCCC--CCCCEEEEEEcccCCCccEEEECCE
Confidence            7777  46999999999995 4458888865

>d1cxla1 b.1.18.2 (A:497-583) Cyclomaltodextrin glycanotransferase, domain D {Bacillus circulans, different strains [TaxId: 1397]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Cyclomaltodextrin glycanotransferase, domain D
species: Bacillus circulans, different strains [TaxId: 1397]

Probab=90.74  E-value=0.05  Score=29.73  Aligned_cols=27  Identities=37%  Similarity=0.443  Sum_probs=21.6

Q ss_pred             CCCCceecCeEEEEecCccccc-eeeEEee
Q psy14529         26 PSEGWTSGGATVIIVGDNFFDG-LQVVFGT   54 (59)
Q Consensus        26 pseGW~tgG~tViiiG~nFf~G-LqvvfG~   54 (59)
                      |+.|-  +|++|.|-|.||-++ .+|.||.
T Consensus        10 P~~g~--~Gt~VTI~G~~F~~~~~~V~v~~   37 (87)
T d1cxla1          10 PMMAK--PGVTITIDGRGFGSSKGTVYFGT   37 (87)
T ss_dssp             CSEEC--TTCEEEEEEECCCSSCCEEEETT
T ss_pred             CCCCC--CCCEEEEEEECCCCCCceEEEee
Confidence            88884  899999999999544 5777764

>d1uadc_ b.1.18.18 (C:) Exocyst complex component Sec5, Ral-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Other IPT/TIG domains
domain: Exocyst complex component Sec5, Ral-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.14  E-value=0.042  Score=30.52  Aligned_cols=26  Identities=31%  Similarity=0.461  Sum_probs=20.3

Q ss_pred             CCCCceecCeEEEEecCccccc----eeeEEe
Q psy14529         26 PSEGWTSGGATVIIVGDNFFDG----LQVVFG   53 (59)
Q Consensus        26 pseGW~tgG~tViiiG~nFf~G----LqvvfG   53 (59)
                      |++|  .||+.|.|.|.||..+    .+|.+|
T Consensus        12 P~~G--~gGT~VTI~G~~f~~~~s~~~~V~v~   41 (92)
T d1uadc_          12 PNEG--IPWTKVTIRGENLGTGPTDLIGLTIC   41 (92)
T ss_dssp             SSEE--STTCEEEEEEECSCSSGGGEEEEEET
T ss_pred             CCCC--CCCcEEEEEEECCCCCCCcceEEEEe
Confidence            8899  4999999999999544    345554

>d1u36a_ b.1.18.1 (A:) p50 subunit of NF-kappa B transcription factor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain
domain: p50 subunit of NF-kappa B transcription factor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.39  E-value=0.14  Score=30.72  Aligned_cols=26  Identities=27%  Similarity=0.533  Sum_probs=22.5

Q ss_pred             CCceecCeEEEEecCccc-cceeeEEe
Q psy14529         28 EGWTSGGATVIIVGDNFF-DGLQVVFG   53 (59)
Q Consensus        28 eGW~tgG~tViiiG~nFf-~GLqvvfG   53 (59)
                      .|-..||..++|+||||- +..+|.|=
T Consensus        11 s~sv~GG~Ev~Ll~~kv~K~di~V~F~   37 (104)
T d1u36a_          11 AGCVTGGEEIWLLCDKVQKDDIQIRFY   37 (104)
T ss_dssp             EEETTCCCEEEEEESCCCTTSCEEEEE
T ss_pred             ceecCCCcEEEEEECCcCCCCeEEEEE
Confidence            355689999999999999 49999994

>d1a3qa1 b.1.18.1 (A:227-327) p52 subunit of NF-kappa B (NFKB) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain
domain: p52 subunit of NF-kappa B (NFKB)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.12  E-value=0.19  Score=30.02  Aligned_cols=26  Identities=27%  Similarity=0.433  Sum_probs=22.3

Q ss_pred             CCceecCeEEEEecCcccc-ceeeEEe
Q psy14529         28 EGWTSGGATVIIVGDNFFD-GLQVVFG   53 (59)
Q Consensus        28 eGW~tgG~tViiiG~nFf~-GLqvvfG   53 (59)
                      .|-..||..++|+||||-. ..+|+|=
T Consensus        11 s~~v~GG~Ei~Ll~~kv~KddikV~F~   37 (101)
T d1a3qa1          11 AGSVRGGDEVYLLCDKVQKDDIEVRFY   37 (101)
T ss_dssp             EEETTCCCEEEEEESSCCTTTEEEEEE
T ss_pred             ceecCCCcEEEEEeCccCCCCCEEEEE
Confidence            3556899999999999975 9999994

>d1imhc1 b.1.18.1 (C:368-468) T-cell transcription factor NFAT5 (TONEBP) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain
domain: T-cell transcription factor NFAT5 (TONEBP)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.95  E-value=0.18  Score=29.88  Aligned_cols=26  Identities=31%  Similarity=0.661  Sum_probs=22.7

Q ss_pred             CCCceecCeEEEEecCccccceeeEE
Q psy14529         27 SEGWTSGGATVIIVGDNFFDGLQVVF   52 (59)
Q Consensus        27 seGW~tgG~tViiiG~nFf~GLqvvf   52 (59)
                      ..|-..||..|+|+||||-...+|+|
T Consensus        10 ~s~~v~GG~Ev~lL~ekv~kdd~v~F   35 (101)
T d1imhc1          10 HSCSVKGEEEVFLIGKNFLKGTKVIF   35 (101)
T ss_dssp             CEEETTCCCEEEEEEECCCTTCEEEE
T ss_pred             CceeeCCCcEEEEEeCccCCCCEEEE
Confidence            34556799999999999999999988

>d1my7a_ b.1.18.1 (A:) p65 subunit of NF-kappa B (NFKB), dimerization domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain
domain: p65 subunit of NF-kappa B (NFKB), dimerization domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.42  E-value=0.38  Score=29.03  Aligned_cols=28  Identities=21%  Similarity=0.423  Sum_probs=23.5

Q ss_pred             CCCceecCeEEEEecCcccc-ceeeEEee
Q psy14529         27 SEGWTSGGATVIIVGDNFFD-GLQVVFGT   54 (59)
Q Consensus        27 seGW~tgG~tViiiG~nFf~-GLqvvfG~   54 (59)
                      ..|-..||..++|+||||-. ..+|+|-.
T Consensus        12 ~s~sv~GG~Ei~Llc~kv~kddi~V~F~E   40 (107)
T d1my7a_          12 RSGSCLGGDEIFLLCDKVQKEDIEVYFTG   40 (107)
T ss_dssp             SEEETTCCCEEEEEESCCCTTSCEEEEEE
T ss_pred             CceecCCCcEEEEEecccccCCCEEEEec
Confidence            44667899999999999965 89999954