Psyllid ID: psy14541

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100---
Protein Sequence
MRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLFPIYHRTYMNAWRNRNKAEAEIEKQKQEKLKAEQEANQDKEAASSA
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccEEEEEHHHHHHHHHcccccccHHHHHHHHHcccccccccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEccccccccccccEEEEEcHHHHHHHHHcccccccHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccc
Coil and Loop (DISEMBL)
mrrndqpieqlgtfdplpneyQEKLVSLNIERIRYwlgtsdihitSPVRELfglaglfpiYHRTYMNAWRNRNKAEAEIEKQKQEKLKAEQEANQdkeaassa
Flexible Loop (DISEMBL)
mrrndqpieqlgtfdplpneYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLFPIYHRTYMNAWRNRNKAEAEIEKQKQEKLKAeqeanqdkeaassa
Low Complexity Region (SEG)
MRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLFPIYHRTYMNAWRNRNkaeaeiekqkqeklkaeqeanqDKEAASSA
Disordered region (IsUnstruct)
******************NEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLFPIYHRTYMNAWR*********************************
Disordered Region (DISOPRED)
*RRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLFPI*******************************************
Disordered Region (DISEMBL)
MRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLFPIYHRTYMNAWRNRNKA****************************
Disordered Region (DISPRO)
****DQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLFPIYHRTYMNAWRNRNKAEAEIEKQKQE******************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLFPIYHRTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSSA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	103	2.2.26 [Sep-21-2011]
Q9V6Y3	129	Probable 28S ribosomal pr	yes	N/A	0.766	0.612	0.621	8e-23
Q10129	147	Probable 28S ribosomal pr	yes	N/A	0.631	0.442	0.553	7e-17
P82915	135	28S ribosomal protein S16	yes	N/A	0.893	0.681	0.427	8e-17
Q5REY4	137	28S ribosomal protein S16	yes	N/A	0.922	0.693	0.43	3e-16
Q9Y3D3	137	28S ribosomal protein S16	yes	N/A	0.922	0.693	0.43	3e-16
Q9CPX7	135	28S ribosomal protein S16	yes	N/A	0.902	0.688	0.412	9e-14
Q2RV59	124	30S ribosomal protein S16	yes	N/A	0.524	0.435	0.418	6e-05

>sp|Q9V6Y3|RT16_DROME Probable 28S ribosomal protein S16, mitochondrial OS=Drosophila melanogaster GN=mRpS16 PE=2 SV=1

 Score =  105 bits (262), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 51/82 (62%), Positives = 62/82 (75%), Gaps = 3/82 (3%)

Query: 6   QP-IEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLFPIYHRT 64
           QP IEQ+G+FDPLPN+Y E+LV+LN ERIRYWLG    H+++P  EL G+AGL PI+ RT
Sbjct: 46  QPVIEQVGSFDPLPNDYNERLVALNTERIRYWLG-KGAHLSTPAAELLGIAGLLPIHPRT 104

Query: 65  YMNAWRN-RNKAEAEIEKQKQE 85
           YM AWRN R  AEAE   +K E
Sbjct: 105 YMTAWRNRRTAAEAEASPEKAE 126

Drosophila melanogaster (taxid: 7227)

>sp|Q10129|RT16_CAEEL Probable 28S ribosomal protein S16, mitochondrial OS=Caenorhabditis elegans GN=F56D1.3 PE=3 SV=2

 Score = 85.9 bits (211), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 36/65 (55%), Positives = 51/65 (78%)

Query: 8   IEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLFPIYHRTYMN 67
           +EQ+GTFDPLPN+  EKLV+LN  R++YW+G  + HI+ PV EL GL+GLFPI+ ++++ 
Sbjct: 47  LEQVGTFDPLPNQKNEKLVALNFGRLKYWIGERNAHISVPVLELLGLSGLFPIHPKSFIR 106

Query: 68  AWRNR 72
           A  NR
Sbjct: 107 AKDNR 111

Caenorhabditis elegans (taxid: 6239)

>sp|P82915|RT16_BOVIN 28S ribosomal protein S16, mitochondrial OS=Bos taurus GN=MRPS16 PE=1 SV=2

 Score = 85.5 bits (210), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 41/96 (42%), Positives = 62/96 (64%), Gaps = 4/96 (4%)

Query: 3   RNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLFPIYH 62
           R+ + +EQLG++DP+PN + EKLV+LN++RIR+W+G    H++ PV +L GL+G FP++ 
Sbjct: 43  RDGRFVEQLGSYDPMPNSHGEKLVALNLDRIRHWIGCGA-HLSKPVEKLLGLSGFFPLHP 101

Query: 63  RTYMNAWRNRNKAEAEIEKQKQEKLKAEQEANQDKE 98
               NA R R K   E+    Q   K + EA + KE
Sbjct: 102 MVITNAERLRRKRAQEVLLAAQ---KTDTEATETKE 134

Bos taurus (taxid: 9913)

>sp|Q5REY4|RT16_PONAB 28S ribosomal protein S16, mitochondrial OS=Pongo abelii GN=MRPS16 PE=2 SV=1

 Score = 84.0 bits (206), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 63/100 (63%), Gaps = 5/100 (5%)

Query: 3   RNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLFPIYH 62
           R+ + +EQLG++DPLPN + EKLV+LN++RIR+W+G    H++ P+ +L GLAG FP++ 
Sbjct: 43  RDGRFVEQLGSYDPLPNSHGEKLVALNLDRIRHWIGCGA-HLSKPMEKLLGLAGFFPLHP 101

Query: 63  RTYMNAWRNRNKAEAEIEKQKQEKLKAEQEANQDKEAASS 102
               NA R R K   E+    Q   K + EA  D EA  +
Sbjct: 102 MMITNAERLRRKLAREVLLASQ---KTDAEAT-DAEATET 137

Pongo abelii (taxid: 9601)

>sp|Q9Y3D3|RT16_HUMAN 28S ribosomal protein S16, mitochondrial OS=Homo sapiens GN=MRPS16 PE=1 SV=1

 Score = 83.6 bits (205), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 63/100 (63%), Gaps = 5/100 (5%)

Query: 3   RNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLFPIYH 62
           R+ + +EQLG++DPLPN + EKLV+LN++RIR+W+G    H++ P+ +L GLAG FP++ 
Sbjct: 43  RDGRFVEQLGSYDPLPNSHGEKLVALNLDRIRHWIGCG-AHLSKPMEKLLGLAGFFPLHP 101

Query: 63  RTYMNAWRNRNKAEAEIEKQKQEKLKAEQEANQDKEAASS 102
               NA R R K   E+    Q   K + EA  D EA  +
Sbjct: 102 MMITNAERLRRKRAREVLLASQ---KTDAEAT-DTEATET 137

Homo sapiens (taxid: 9606)

>sp|Q9CPX7|RT16_MOUSE 28S ribosomal protein S16, mitochondrial OS=Mus musculus GN=Mrps16 PE=2 SV=1

 Score = 75.5 bits (184), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 40/97 (41%), Positives = 63/97 (64%), Gaps = 4/97 (4%)

Query: 3   RNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLFPIYH 62
           R+ + +EQLG++DPLPN + EKLV+LN++RIR+W+G    H++ P+ +L GL+G FP++ 
Sbjct: 43  RDGRFVEQLGSYDPLPNSHGEKLVALNLDRIRHWIGCGA-HLSKPMEKLLGLSGFFPLHP 101

Query: 63  RTYMNAWRNRNKAEAEIEKQKQEKLKAEQEANQDKEA 99
               NA R R +   E+    Q   KAE EA + + +
Sbjct: 102 MMITNAERLRRRRAREVLLASQ---KAESEAKETEAS 135

Mus musculus (taxid: 10090)

>sp|Q2RV59|RS16_RHORT 30S ribosomal protein S16 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=rpsP PE=3 SV=1

 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 3  RNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGL 57
          R+ + IE+LGTFDP+     E+ V L  ER++YWLG   +  +  V    GL+GL
Sbjct: 29 RDGRFIEKLGTFDPMLPRDHERRVVLKDERVKYWLGVGALP-SDRVARFLGLSGL 82

Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) (taxid: 269796)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	103
170047262	136	28S ribosomal protein S16 [Culex quinque	0.873	0.661	0.561	5e-23
340724898	140	PREDICTED: probable 28S ribosomal protei	0.854	0.628	0.548	5e-22
350422028	140	PREDICTED: probable 28S ribosomal protei	0.834	0.614	0.551	6e-22
157123704	139	28S ribosomal protein S16, mitochondrial	0.844	0.625	0.582	8e-22
17647683	129	mitochondrial ribosomal protein S16, iso	0.766	0.612	0.621	3e-21
307210621	137	Probable 28S ribosomal protein S16, mito	0.679	0.510	0.633	7e-21
194883164	129	GG22441 [Drosophila erecta] gi|190658860	0.766	0.612	0.609	8e-21
118790051	137	AGAP004818-PA [Anopheles gambiae str. PE	0.718	0.540	0.615	2e-20
195485878	129	GE12332 [Drosophila yakuba] gi|194177372	0.640	0.511	0.661	2e-19
195430146	126	GK21750 [Drosophila willistoni] gi|19415	0.737	0.603	0.576	3e-19

>gi|170047262|ref|XP_001851147.1| 28S ribosomal protein S16 [Culex quinquefasciatus] gi|167869728|gb|EDS33111.1| 28S ribosomal protein S16 [Culex quinquefasciatus]

 Score =  111 bits (278), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 55/98 (56%), Positives = 72/98 (73%), Gaps = 8/98 (8%)

Query: 6   QP-IEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLFPIYHRT 64
           QP IEQ+GT+DP+PNE+ EKLVS N ER+RYWLG S  H+++PV EL G+AGL P++ RT
Sbjct: 46  QPVIEQIGTYDPIPNEHNEKLVSFNFERVRYWLG-SGAHLSTPVAELLGVAGLLPVHPRT 104

Query: 65  YMNAWRNRNKAEAEIEKQKQEKLKAEQEANQDKEAASS 102
           YMNAWRNR  AE      K  +L+A ++ ++D   ASS
Sbjct: 105 YMNAWRNRQTAE------KVAQLEAAKKQSEDAAEASS 136

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340724898|ref|XP_003400815.1| PREDICTED: probable 28S ribosomal protein S16, mitochondrial-like [Bombus terrestris]

 Score =  108 bits (269), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 51/93 (54%), Positives = 65/93 (69%), Gaps = 5/93 (5%)

Query: 7   PIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLFPIYHRTYM 66
           PIEQLGT+DP+PN+Y EKL++LN ERI+YWLG  ++ ++ PV  L GL G FPI+ RTYM
Sbjct: 51  PIEQLGTYDPMPNKYDEKLIALNFERIQYWLG-QNVTVSKPVAILLGLCGFFPIHPRTYM 109

Query: 67  NAWRNRNKAEAEIEKQKQEKLKAEQEANQDKEA 99
            AWRNR KA  EIE+        E E+  + EA
Sbjct: 110 KAWRNRKKAAEEIERNNS----GESESKTETEA 138

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350422028|ref|XP_003493033.1| PREDICTED: probable 28S ribosomal protein S16, mitochondrial-like [Bombus impatiens]

 Score =  107 bits (268), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 48/87 (55%), Positives = 65/87 (74%), Gaps = 1/87 (1%)

Query: 7   PIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLFPIYHRTYM 66
           PIEQLGT+DP+PN+Y EKL++LN ERI+YWLG  ++ ++ PV  L GL G FPI+ +TYM
Sbjct: 51  PIEQLGTYDPMPNKYNEKLIALNFERIQYWLG-QNVTVSKPVAILLGLCGFFPIHPKTYM 109

Query: 67  NAWRNRNKAEAEIEKQKQEKLKAEQEA 93
            AWRNR KA  EIE+ K  + +++ E 
Sbjct: 110 RAWRNRRKAAEEIERNKSGESESQTET 136

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157123704|ref|XP_001653853.1| 28S ribosomal protein S16, mitochondrial [Aedes aegypti] gi|108874273|gb|EAT38498.1| AAEL009608-PA [Aedes aegypti]

 Score =  107 bits (267), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 53/91 (58%), Positives = 68/91 (74%), Gaps = 4/91 (4%)

Query: 6   QP-IEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLFPIYHRT 64
           QP IEQ+GT+DP+PNE  EKLVS N ER+R+WLG S  H+++PV EL G+AGL P++ RT
Sbjct: 46  QPVIEQIGTYDPIPNENNEKLVSFNFERVRHWLG-SGAHLSTPVAELLGIAGLLPVHPRT 104

Query: 65  YMNAWRNRNKAE--AEIEKQKQEKLKAEQEA 93
           YM+AWRNR  AE  AE+E  KQ+   + Q A
Sbjct: 105 YMSAWRNRQAAEKVAELEAAKQKAEGSTQGA 135

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|17647683|ref|NP_523737.1| mitochondrial ribosomal protein S16, isoform A [Drosophila melanogaster] gi|442623667|ref|NP_001260967.1| mitochondrial ribosomal protein S16, isoform B [Drosophila melanogaster] gi|442623669|ref|NP_001260968.1| mitochondrial ribosomal protein S16, isoform C [Drosophila melanogaster] gi|13633945|sp|Q9V6Y3.1|RT16_DROME RecName: Full=Probable 28S ribosomal protein S16, mitochondrial; Short=MRP-S16; Short=S16mt gi|7303221|gb|AAF58284.1| mitochondrial ribosomal protein S16, isoform A [Drosophila melanogaster] gi|21430784|gb|AAM51070.1| SD15809p [Drosophila melanogaster] gi|220959230|gb|ACL92158.1| mRpS16-PA [synthetic construct] gi|440214382|gb|AGB93499.1| mitochondrial ribosomal protein S16, isoform B [Drosophila melanogaster] gi|440214383|gb|AGB93500.1| mitochondrial ribosomal protein S16, isoform C [Drosophila melanogaster]

 Score =  105 bits (262), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 51/82 (62%), Positives = 62/82 (75%), Gaps = 3/82 (3%)

Query: 6   QP-IEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLFPIYHRT 64
           QP IEQ+G+FDPLPN+Y E+LV+LN ERIRYWLG    H+++P  EL G+AGL PI+ RT
Sbjct: 46  QPVIEQVGSFDPLPNDYNERLVALNTERIRYWLG-KGAHLSTPAAELLGIAGLLPIHPRT 104

Query: 65  YMNAWRN-RNKAEAEIEKQKQE 85
           YM AWRN R  AEAE   +K E
Sbjct: 105 YMTAWRNRRTAAEAEASPEKAE 126

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307210621|gb|EFN87066.1| Probable 28S ribosomal protein S16, mitochondrial [Harpegnathos saltator]

 Score =  104 bits (260), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 45/71 (63%), Positives = 54/71 (76%), Gaps = 1/71 (1%)

Query: 7   PIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLFPIYHRTYM 66
           PIEQLGT+DP+PN+Y EKLVS N ERI+YWL     H+++PV EL GLAG FP++ RTYM
Sbjct: 53  PIEQLGTYDPIPNKYNEKLVSFNFERIQYWLAKGS-HVSTPVAELLGLAGFFPVHPRTYM 111

Query: 67  NAWRNRNKAEA 77
            AWRNR   E 
Sbjct: 112 TAWRNRKTVET 122

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194883164|ref|XP_001975673.1| GG22441 [Drosophila erecta] gi|190658860|gb|EDV56073.1| GG22441 [Drosophila erecta]

 Score =  104 bits (259), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 50/82 (60%), Positives = 62/82 (75%), Gaps = 3/82 (3%)

Query: 6   QP-IEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLFPIYHRT 64
           QP IEQ+G+FDPLPN+Y E+LV+LN ERIRYWLG    H+++P  EL G+AGL PI+ RT
Sbjct: 46  QPVIEQVGSFDPLPNDYNERLVALNTERIRYWLGKGA-HLSTPAAELLGIAGLLPIHPRT 104

Query: 65  YMNAWRNRN-KAEAEIEKQKQE 85
           YM AWRNR   AE E   +K+E
Sbjct: 105 YMTAWRNRRAAAETEASSEKEE 126

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|118790051|ref|XP_317991.3| AGAP004818-PA [Anopheles gambiae str. PEST] gi|116122332|gb|EAA13246.3| AGAP004818-PA [Anopheles gambiae str. PEST]

 Score =  102 bits (255), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 48/78 (61%), Positives = 59/78 (75%), Gaps = 4/78 (5%)

Query: 2   RRNDQ---PIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLF 58
           RR DQ    IEQ+GT+DP+PNE+ E+LVS N ERIR+W+G S  HI+ PV EL G+AGL 
Sbjct: 40  RRKDQYQPVIEQVGTYDPIPNEHNEQLVSFNYERIRHWIG-SGAHISKPVAELLGIAGLL 98

Query: 59  PIYHRTYMNAWRNRNKAE 76
           P++ RTYM AWRNR  AE
Sbjct: 99  PVHPRTYMTAWRNRQMAE 116

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195485878|ref|XP_002091271.1| GE12332 [Drosophila yakuba] gi|194177372|gb|EDW90983.1| GE12332 [Drosophila yakuba]

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 45/68 (66%), Positives = 55/68 (80%), Gaps = 2/68 (2%)

Query: 6   QP-IEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLFPIYHRT 64
           QP IEQ+G+FDPLPN+Y E+LV+LN ERIRYWLG    H+++P  EL G+AGL PI+ RT
Sbjct: 46  QPVIEQVGSFDPLPNDYNERLVALNTERIRYWLGKGA-HLSTPAAELLGIAGLLPIHPRT 104

Query: 65  YMNAWRNR 72
           YM AWRNR
Sbjct: 105 YMTAWRNR 112

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195430146|ref|XP_002063117.1| GK21750 [Drosophila willistoni] gi|194159202|gb|EDW74103.1| GK21750 [Drosophila willistoni]

 Score = 99.0 bits (245), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 45/78 (57%), Positives = 59/78 (75%), Gaps = 2/78 (2%)

Query: 6   QP-IEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLFPIYHRT 64
           QP IEQ+G++DPLPN++ E+LV+LN ERIR+WLG    H++ P  EL G+AGL PI+ RT
Sbjct: 46  QPVIEQVGSYDPLPNDFNERLVALNTERIRFWLGKGA-HLSVPAAELLGIAGLLPIHPRT 104

Query: 65  YMNAWRNRNKAEAEIEKQ 82
           YM AWRNR KA  E + +
Sbjct: 105 YMTAWRNRRKAADEAQAE 122

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	103
FB|FBgn0033907	129	mRpS16 "mitochondrial ribosoma	0.679	0.542	0.643	3.9e-21
WB|WBGene00018961	147	mrps-16 [Caenorhabditis elegan	0.631	0.442	0.553	1.8e-16
UNIPROTKB|J9NS54	199	MRPS16 "Uncharacterized protei	0.669	0.346	0.485	1.8e-14
UNIPROTKB|Q9Y3D3	137	MRPS16 "28S ribosomal protein	0.669	0.503	0.485	1.8e-14
UNIPROTKB|P82915	135	MRPS16 "28S ribosomal protein	0.669	0.511	0.471	2.3e-14
MGI|MGI:1913492	135	Mrps16 "mitochondrial ribosoma	0.669	0.511	0.471	3.8e-14
UNIPROTKB|F1SU70	135	LOC100739849 "Uncharacterized	0.669	0.511	0.471	6.2e-14
RGD|1582995	135	Mrps16 "mitochondrial ribosoma	0.669	0.511	0.457	2.7e-13
ZFIN|ZDB-GENE-041010-123	129	mrps16 "mitochondrial ribosoma	0.669	0.534	0.457	7.1e-13
UNIPROTKB|E1C907	136	MRPS16 "Uncharacterized protei	0.669	0.507	0.457	3.1e-12

FB|FBgn0033907 mRpS16 "mitochondrial ribosomal protein S16" [Drosophila melanogaster (taxid:7227)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 47/73 (64%), Positives = 58/73 (79%)

Query:     2 RRND-QP-IEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLFP 59
             R+N  QP IEQ+G+FDPLPN+Y E+LV+LN ERIRYWLG    H+++P  EL G+AGL P
Sbjct:    41 RKNQHQPVIEQVGSFDPLPNDYNERLVALNTERIRYWLGKG-AHLSTPAAELLGIAGLLP 99

Query:    60 IYHRTYMNAWRNR 72
             I+ RTYM AWRNR
Sbjct:   100 IHPRTYMTAWRNR 112

GO:0005763 "mitochondrial small ribosomal subunit" evidence=ISS;NAS

GO:0003735 "structural constituent of ribosome" evidence=ISS;NAS

GO:0006412 "translation" evidence=ISS

WB|WBGene00018961 mrps-16 [Caenorhabditis elegans (taxid:6239)]

 Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 36/65 (55%), Positives = 51/65 (78%)

Query:     8 IEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLFPIYHRTYMN 67
             +EQ+GTFDPLPN+  EKLV+LN  R++YW+G  + HI+ PV EL GL+GLFPI+ ++++ 
Sbjct:    47 LEQVGTFDPLPNQKNEKLVALNFGRLKYWIGERNAHISVPVLELLGLSGLFPIHPKSFIR 106

Query:    68 AWRNR 72
             A  NR
Sbjct:   107 AKDNR 111

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

UNIPROTKB|J9NS54 MRPS16 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 34/70 (48%), Positives = 50/70 (71%)

Query:     3 RNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLFPIYH 62
             R+ + +EQLG++DPLPN + EK+V+LN+ERIR+W+G    H++ PV  L GL+G FP++ 
Sbjct:   107 RDGRFVEQLGSYDPLPNSHGEKIVALNLERIRHWIGCG-AHLSKPVERLLGLSGFFPLHP 165

Query:    63 RTYMNAWRNR 72
                 NA R R
Sbjct:   166 MMITNAERLR 175

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|Q9Y3D3 MRPS16 "28S ribosomal protein S16, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 34/70 (48%), Positives = 51/70 (72%)

Query:     3 RNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLFPIYH 62
             R+ + +EQLG++DPLPN + EKLV+LN++RIR+W+G    H++ P+ +L GLAG FP++ 
Sbjct:    43 RDGRFVEQLGSYDPLPNSHGEKLVALNLDRIRHWIGCG-AHLSKPMEKLLGLAGFFPLHP 101

Query:    63 RTYMNAWRNR 72
                 NA R R
Sbjct:   102 MMITNAERLR 111

GO:0006412 "translation" evidence=NAS

GO:0005763 "mitochondrial small ribosomal subunit" evidence=IDA

GO:0003735 "structural constituent of ribosome" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|P82915 MRPS16 "28S ribosomal protein S16, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
 Identities = 33/70 (47%), Positives = 51/70 (72%)

Query:     3 RNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLFPIYH 62
             R+ + +EQLG++DP+PN + EKLV+LN++RIR+W+G    H++ PV +L GL+G FP++ 
Sbjct:    43 RDGRFVEQLGSYDPMPNSHGEKLVALNLDRIRHWIGCG-AHLSKPVEKLLGLSGFFPLHP 101

Query:    63 RTYMNAWRNR 72
                 NA R R
Sbjct:   102 MVITNAERLR 111

GO:0005763 "mitochondrial small ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

MGI|MGI:1913492 Mrps16 "mitochondrial ribosomal protein S16" [Mus musculus (taxid:10090)]

 Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
 Identities = 33/70 (47%), Positives = 51/70 (72%)

Query:     3 RNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLFPIYH 62
             R+ + +EQLG++DPLPN + EKLV+LN++RIR+W+G    H++ P+ +L GL+G FP++ 
Sbjct:    43 RDGRFVEQLGSYDPLPNSHGEKLVALNLDRIRHWIGCG-AHLSKPMEKLLGLSGFFPLHP 101

Query:    63 RTYMNAWRNR 72
                 NA R R
Sbjct:   102 MMITNAERLR 111

GO:0003674 "molecular_function" evidence=ND

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005763 "mitochondrial small ribosomal subunit" evidence=ISO

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0030529 "ribonucleoprotein complex" evidence=IEA

UNIPROTKB|F1SU70 LOC100739849 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 33/70 (47%), Positives = 50/70 (71%)

Query:     3 RNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLFPIYH 62
             R+ + +EQLG++DPLPN + EKLV+LN +RIR+W+G    H++ PV +L GL+G +P++ 
Sbjct:    43 RDGRFVEQLGSYDPLPNSHGEKLVALNFDRIRHWIGCG-AHLSKPVEKLLGLSGFYPLHP 101

Query:    63 RTYMNAWRNR 72
                 NA R R
Sbjct:   102 MMITNAERLR 111

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

RGD|1582995 Mrps16 "mitochondrial ribosomal protein S16" [Rattus norvegicus (taxid:10116)]

 Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 32/70 (45%), Positives = 50/70 (71%)

Query:     3 RNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLFPIYH 62
             R+ + +EQLG++DPLPN + EKLV+LN++RIR+W+G     ++ P+ +L GL+G FP++ 
Sbjct:    43 RDGRFVEQLGSYDPLPNSHGEKLVALNLDRIRHWIGCG-AQLSKPMEKLLGLSGFFPLHP 101

Query:    63 RTYMNAWRNR 72
                 NA R R
Sbjct:   102 MMITNAERLR 111

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO

GO:0005763 "mitochondrial small ribosomal subunit" evidence=IEA;ISO

GO:0006412 "translation" evidence=IEA

ZFIN|ZDB-GENE-041010-123 mrps16 "mitochondrial ribosomal protein S16" [Danio rerio (taxid:7955)]

 Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
 Identities = 32/70 (45%), Positives = 47/70 (67%)

Query:     3 RNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLFPIYH 62
             R+ + +EQ+G++DPLPN + EKLV+ N ERI++W+     H T PV +L GLAG FP++ 
Sbjct:    43 RDGKYLEQVGSYDPLPNIHNEKLVAFNYERIKHWIACG-AHTTKPVAKLLGLAGFFPLHP 101

Query:    63 RTYMNAWRNR 72
              T   A R +
Sbjct:   102 MTITEAERRQ 111

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

UNIPROTKB|E1C907 MRPS16 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 32/70 (45%), Positives = 45/70 (64%)

Query:     3 RNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLFPIYH 62
             R+ + +EQLG  DPLPN + EK+  LN+ER+R+WLG     ++ P  +L GLAG  P++ 
Sbjct:    43 RDGKYLEQLGCLDPLPNAHGEKVAGLNLERLRHWLGCG-AQLSRPAEKLLGLAGFLPLHP 101

Query:    63 RTYMNAWRNR 72
              T  NA R R
Sbjct:   102 MTITNAERLR 111

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005763 "mitochondrial small ribosomal subunit" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9V6Y3	RT16_DROME	No assigned EC number	0.6219	0.7669	0.6124	yes	N/A
Q5REY4	RT16_PONAB	No assigned EC number	0.43	0.9223	0.6934	yes	N/A
Q9CPX7	RT16_MOUSE	No assigned EC number	0.4123	0.9029	0.6888	yes	N/A
Q9Y3D3	RT16_HUMAN	No assigned EC number	0.43	0.9223	0.6934	yes	N/A
Q10129	RT16_CAEEL	No assigned EC number	0.5538	0.6310	0.4421	yes	N/A
P82915	RT16_BOVIN	No assigned EC number	0.4270	0.8932	0.6814	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	103
TIGR00002	78	TIGR00002, S16, ribosomal protein S16	2e-11
pfam00886	61	pfam00886, Ribosomal_S16, Ribosomal protein S16	2e-10
PRK00040	75	PRK00040, rpsP, 30S ribosomal protein S16; Reviewe	1e-07
COG0228	87	COG0228, RpsP, Ribosomal protein S16 [Translation,	5e-06
CHL00005	82	CHL00005, rps16, ribosomal protein S16	4e-04

>gnl|CDD|129114 TIGR00002, S16, ribosomal protein S16

 Score = 54.5 bits (132), Expect = 2e-11
 Identities = 25/57 (43%), Positives = 33/57 (57%), Gaps = 4/57 (7%)

Query: 2  RRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLF 58
          RR+ + IE+LG ++PL     E  V LN+ERI+YWL       T  VR L   AG+F
Sbjct: 26 RRDGRYIEELGFYNPLTK---ESRVKLNVERIKYWLSKG-AQPTDTVRNLLKKAGVF 78

This model describes ribosomal S16 of bacteria and organelles [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 78

>gnl|CDD|216173 pfam00886, Ribosomal_S16, Ribosomal protein S16

 Score = 51.7 bits (125), Expect = 2e-10
 Identities = 18/37 (48%), Positives = 26/37 (70%), Gaps = 1/37 (2%)

Query: 2  RRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLG 38
           R+ + IE+LGT++P+    QE  V L+ ERI+YWLG
Sbjct: 20 PRDGRFIEELGTYNPIAKP-QEPEVKLDEERIKYWLG 55

Length = 61

>gnl|CDD|234588 PRK00040, rpsP, 30S ribosomal protein S16; Reviewed

 Score = 44.7 bits (107), Expect = 1e-07
 Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)

Query: 1  MRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLG 38
            R+ + IE++G ++PL     E+ V L+ ER+ YWLG
Sbjct: 26 SPRDGRFIERVGFYNPLAKP-AEEEVKLDEERVLYWLG 62

Length = 75

>gnl|CDD|223306 COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]

 Score = 40.7 bits (96), Expect = 5e-06
 Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 2/37 (5%)

Query: 2  RRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLG 38
           R+ + IE+LGT++PL  +  E+ V L+ ERI YWL 
Sbjct: 27 PRDGRFIERLGTYNPLLGK--EERVKLDEERILYWLS 61

Length = 87

>gnl|CDD|176950 CHL00005, rps16, ribosomal protein S16

 Score = 35.8 bits (83), Expect = 4e-04
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 5/36 (13%)

Query: 2  RRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWL 37
          RR  + +E++G +DP+ N+       LN+  I Y+L
Sbjct: 27 RREGRDLEKVGFYDPIKNQTY-----LNVPAILYFL 57

Length = 82

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	103
KOG3419|consensus	112		99.97
TIGR00002	78	S16 ribosomal protein S16. This model describes ri	99.92
PRK14525	88	rpsP 30S ribosomal protein S16; Provisional	99.91
CHL00005	82	rps16 ribosomal protein S16	99.91
PRK14524	94	rpsP 30S ribosomal protein S16; Provisional	99.91
PRK14521	186	rpsP 30S ribosomal protein S16; Provisional	99.91
PRK14523	137	rpsP 30S ribosomal protein S16; Provisional	99.9
PRK14522	116	rpsP 30S ribosomal protein S16; Provisional	99.9
COG0228	87	RpsP Ribosomal protein S16 [Translation, ribosomal	99.89
PRK14520	155	rpsP 30S ribosomal protein S16; Provisional	99.89
PRK00040	75	rpsP 30S ribosomal protein S16; Reviewed	99.89
PF00886	62	Ribosomal_S16: Ribosomal protein S16; InterPro: IP	99.81

>KOG3419|consensus

Probab=99.97  E-value=5e-31  Score=185.95  Aligned_cols=82  Identities=52%  Similarity=0.888  Sum_probs=77.3

Q ss_pred             CCCCCccccccceecCCCCCCCcceeeeeHHHHHHHHhCCCcccCHHHHHHHHHcCCCCcchhhhhHHhhchhHHHHHHH
Q psy14541          1 MRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLFPIYHRTYMNAWRNRNKAEAEIE   80 (103)
Q Consensus         1 ~~RdGk~IE~LG~YdP~~~~~~ek~v~ln~eRi~yWL~~G~AqPS~tV~~LL~~ag~lp~~p~~~~~~~~~~~k~~~~~~   80 (103)
                      ++|||++||+||+|||+++..+++.|.||++||+|||++| ||||++|.+||+++|++|.||++++.+|++|+..+++.+
T Consensus        27 ~~rdgk~iE~lG~ydPlp~~~~~~~v~Ln~dRikyWl~~G-AqpS~tv~~Ll~~aGl~p~~p~~~~~a~~~rr~~a~~~~  105 (112)
T KOG3419|consen   27 KRRDGKPIEQLGTYDPLPNQDNEKLVALNFDRIKYWLGVG-AQPSDTVEELLGKAGLFPIHPMTFMNAKRNRRLTAEQVL  105 (112)
T ss_pred             ccccCCchhheecccCCCCCCCCcceeecHHHHHHHHhcC-CccChHHHHHHHhcCCCCCchhhhhccccchhhhhhhcc
Confidence            4799999999999999999999999999999999999999 999999999999999999999999999999999877765


Q ss_pred             HHH
Q psy14541         81 KQK   83 (103)
Q Consensus        81 ~~~   83 (103)
                      ...
T Consensus       106 ~~~  108 (112)
T KOG3419|consen  106 PVE  108 (112)
T ss_pred             chh
Confidence            544

>TIGR00002 S16 ribosomal protein S16

Probab=99.92  E-value=2.6e-25  Score=148.84  Aligned_cols=54  Identities=46%  Similarity=0.830  Sum_probs=50.8

Q ss_pred             CCCCCccccccceecCCCCCCCcceeeeeHHHHHHHHhCCCcccCHHHHHHHHHcCCC
Q psy14541          1 MRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLF   58 (103)
Q Consensus         1 ~~RdGk~IE~LG~YdP~~~~~~ek~v~ln~eRi~yWL~~G~AqPS~tV~~LL~~ag~l   58 (103)
                      ++|||+|||+||+|||++++   +.|.||++|++|||++| ||||++|.+||+++|++
T Consensus        25 ~~RdGk~iE~lG~YnP~~~~---~~i~l~~~ri~~Wl~~G-Aqps~tV~~Ll~~~g~~   78 (78)
T TIGR00002        25 SRRDGRYIEELGFYNPLTKE---SRVKLNVERIKYWLSKG-AQPTDTVRNLLKKAGVF   78 (78)
T ss_pred             CCCCCCceeEeeeccCCCCC---cEEEEcHHHHHHHHHCC-CccCHHHHHHHHHccCC
Confidence            57999999999999999864   68999999999999999 99999999999999975

This model describes ribosomal S16 of bacteria and organelles.

>PRK14525 rpsP 30S ribosomal protein S16; Provisional

Probab=99.91  E-value=4e-25  Score=150.98  Aligned_cols=58  Identities=22%  Similarity=0.387  Sum_probs=53.1

Q ss_pred             CCCCCccccccceecCCCCCCCcceeeeeHHHHHHHHhCCCcccCHHHHHHHHHcCCCCcch
Q psy14541          1 MRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLFPIYH   62 (103)
Q Consensus         1 ~~RdGk~IE~LG~YdP~~~~~~ek~v~ln~eRi~yWL~~G~AqPS~tV~~LL~~ag~lp~~p   62 (103)
                      ++|||+|||+||||||+.++   +.|.||++||+|||++| ||||+||++||+++|+...+|
T Consensus        27 ~~RdGk~IE~lG~YnP~~~~---~~i~ln~eri~~WL~~G-AqpT~tV~~Ll~~~g~~~~~~   84 (88)
T PRK14525         27 NARDGKYLEDVGIYDPTKRP---ERIELKVERIEHWLKAG-AKPSQTVAMILKRAAKAAAPA   84 (88)
T ss_pred             CCCCCCceeEEecccCCCCC---ceEEEcHHHHHHHHHCC-CccCHHHHHHHHHcCccCCCC
Confidence            57999999999999999753   58999999999999999 999999999999999996543

>CHL00005 rps16 ribosomal protein S16

Probab=99.91  E-value=3.6e-25  Score=149.53  Aligned_cols=55  Identities=29%  Similarity=0.510  Sum_probs=50.9

Q ss_pred             CCCCCccccccceecCCCCCCCcceeeeeHHHHHHHHhCCCcccCHHHHHHHHHcCCCCcc
Q psy14541          1 MRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLFPIY   61 (103)
Q Consensus         1 ~~RdGk~IE~LG~YdP~~~~~~ek~v~ln~eRi~yWL~~G~AqPS~tV~~LL~~ag~lp~~   61 (103)
                      ++|||+|||+||+|||+.+     .+.||++|++|||++| ||||++|++||+++|+++.+
T Consensus        26 ~~RdGk~iE~lG~YnP~~~-----~~~ln~eri~~Wl~~G-Aqpt~tV~~Ll~~~g~~~~~   80 (82)
T CHL00005         26 SRREGRDLEKVGFYDPIKN-----QTYLNVPAILYFLEKG-AQPTETVYDILKKAEVFKEL   80 (82)
T ss_pred             CCCCCcceeEeeeccCCCc-----ccEEeHHHHHHHHHCc-CccCHHHHHHHHHcCchhhh
Confidence            5899999999999999965     4699999999999999 99999999999999998754

>PRK14524 rpsP 30S ribosomal protein S16; Provisional

Probab=99.91  E-value=5.1e-25  Score=151.95  Aligned_cols=59  Identities=25%  Similarity=0.488  Sum_probs=53.9

Q ss_pred             CCCCCccccccceecCCCCCCCcceeeeeHHHHHHHHhCCCcccCHHHHHHHHHcCCCCcchh
Q psy14541          1 MRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLFPIYHR   63 (103)
Q Consensus         1 ~~RdGk~IE~LG~YdP~~~~~~ek~v~ln~eRi~yWL~~G~AqPS~tV~~LL~~ag~lp~~p~   63 (103)
                      ++|||+|||+||||||++++   ..|.||++|++|||++| ||||+||.+||+++|++++...
T Consensus        26 ~~RdGk~iE~lG~YnP~~~~---~~i~l~~eri~~Wl~~G-AqpT~tV~~Llkk~g~~~~~~~   84 (94)
T PRK14524         26 KRRDGAYIESLGYYNPLKEP---YEIKVDVERAVEWILKG-AQPSDTVRDILRKFGVMKKVHE   84 (94)
T ss_pred             CCCCCCceeEeeecCCCCCC---ceEEEcHHHHHHHHHcC-CccCHHHHHHHHHccchhhhHH
Confidence            58999999999999999764   58999999999999999 9999999999999999876443

>PRK14521 rpsP 30S ribosomal protein S16; Provisional

Probab=99.91  E-value=1.9e-24  Score=164.14  Aligned_cols=58  Identities=31%  Similarity=0.576  Sum_probs=54.2

Q ss_pred             CCCCCccccccceecCCCCCCCcceeeeeHHHHHHHHhCCCcccCHHHHHHHHHcCCCCcch
Q psy14541          1 MRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLFPIYH   62 (103)
Q Consensus         1 ~~RdGk~IE~LG~YdP~~~~~~ek~v~ln~eRi~yWL~~G~AqPS~tV~~LL~~ag~lp~~p   62 (103)
                      ++|||+|||+||||||+.++   ..|.||++||+|||++| ||||+||++||++.|+|++++
T Consensus        27 ~~RDGk~IE~lG~YnP~~~~---~~i~Ln~eRi~~WL~~G-AqPTdtV~~lL~~~g~~~k~~   84 (186)
T PRK14521         27 APRDGKFIEKIGTYNPNTNP---ATVDLNFDRAVYWLMNG-AQPTDTARNILSYEGVLLKKH   84 (186)
T ss_pred             CCCCCCceeeeeecCCCCCC---ceEEEcHHHHHHHHHCC-CcCCHHHHHHHHHcccchhhh
Confidence            58999999999999999764   68999999999999999 999999999999999998765

>PRK14523 rpsP 30S ribosomal protein S16; Provisional

Probab=99.90  E-value=5.8e-24  Score=155.05  Aligned_cols=69  Identities=20%  Similarity=0.266  Sum_probs=59.2

Q ss_pred             CCCCCccccccceecCCCCCCCcceeeeeHHHHHHHHhCCCcccCHHHHHHHHHcCCCCcchhhhhHHhhc
Q psy14541          1 MRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLFPIYHRTYMNAWRN   71 (103)
Q Consensus         1 ~~RdGk~IE~LG~YdP~~~~~~ek~v~ln~eRi~yWL~~G~AqPS~tV~~LL~~ag~lp~~p~~~~~~~~~   71 (103)
                      ++|||+|||.||||||+++.. ++.|.||++||+|||++| ||||++|.+||+++|++|.++..-.....+
T Consensus        26 s~RDGK~IE~LG~YdP~~~~~-~~~i~Ln~eRi~yWL~~G-AQPS~tV~~LLkkag~~~~~~~~~g~~~~~   94 (137)
T PRK14523         26 KPRDGRFIERVGYYNPMARGQ-DIRLQLEKERISHWLNQG-AQTSLRVKHLIKKLEKSPEEAQKGGMRKGE   94 (137)
T ss_pred             CCCCCCceeeeeecCCCCCCC-CceEEECHHHHHHHHHCC-CccCHHHHHHHHHcccchHHHHhcccccCC
Confidence            579999999999999998764 358999999999999999 999999999999999999876543333333

>PRK14522 rpsP 30S ribosomal protein S16; Provisional

Probab=99.90  E-value=2.1e-23  Score=148.66  Aligned_cols=60  Identities=28%  Similarity=0.457  Sum_probs=54.8

Q ss_pred             CCCCCccccccceecCCCCCCCcceeeeeHHHHHHHHhCCCcccCHHHHHHHHH--cCCCCcchhhh
Q psy14541          1 MRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGL--AGLFPIYHRTY   65 (103)
Q Consensus         1 ~~RdGk~IE~LG~YdP~~~~~~ek~v~ln~eRi~yWL~~G~AqPS~tV~~LL~~--ag~lp~~p~~~   65 (103)
                      ++|||+|||+||||||+.+    +.|.||++||.|||++| ||||++|..||++  .|++++.....
T Consensus        27 ~~RDGk~IE~lG~YdP~~~----~~v~Ln~eRi~yWL~~G-AqPS~tV~~LLkk~~~Gi~~~~~~~k   88 (116)
T PRK14522         27 SPRDGKYIELLGWYDPHSE----QNYQLKSERIFYWLNQG-AELTEKAGALVKQGAPGVYSELMAKK   88 (116)
T ss_pred             CCCCCCcceeeeccCCCCC----CceEECHHHHHHHHHCC-CccCHHHHHHHHhhhcccchhHHHHH
Confidence            5899999999999999875    36999999999999999 9999999999999  69999976644

>COG0228 RpsP Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]

Probab=99.89  E-value=6.4e-24  Score=144.93  Aligned_cols=53  Identities=42%  Similarity=0.663  Sum_probs=49.3

Q ss_pred             CCCCCccccccceecCCCCCCCcceeeeeHHHHHHHHhCCCcccCHHHHHHHHHcC
Q psy14541          1 MRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAG   56 (103)
Q Consensus         1 ~~RdGk~IE~LG~YdP~~~~~~ek~v~ln~eRi~yWL~~G~AqPS~tV~~LL~~ag   56 (103)
                      +||||+|||.||+|||+.  ..+..|.||.||+.|||++| |||||||++||+++|
T Consensus        26 s~RDGr~IE~lG~ynP~~--~~~~~v~l~~eri~~Wl~~G-AqpSdtV~~ll~~~g   78 (87)
T COG0228          26 SPRDGRFIERLGTYNPLL--GKEERVKLDEERILYWLSQG-AQPSDTVRRLLKKAG   78 (87)
T ss_pred             CCCCCcchhhhcccCCCC--CccceEEEcHHHHHHHHHcC-CcccHHHHHHHHHhh
Confidence            589999999999999977  23468999999999999999 999999999999998

>PRK14520 rpsP 30S ribosomal protein S16; Provisional

Probab=99.89  E-value=1.1e-23  Score=156.29  Aligned_cols=56  Identities=29%  Similarity=0.644  Sum_probs=51.9

Q ss_pred             CCCCCccccccceecCCCCCCCcceeeeeHHHHHHHHhCCCcccCHHHHHHHHHcCCCCc
Q psy14541          1 MRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLFPI   60 (103)
Q Consensus         1 ~~RdGk~IE~LG~YdP~~~~~~ek~v~ln~eRi~yWL~~G~AqPS~tV~~LL~~ag~lp~   60 (103)
                      ++|||+|||+||||||+.++   ..|.||++||+|||++| ||||++|.+||++.|++.+
T Consensus        27 ~~RDGk~IE~lG~YnP~~~~---~~i~ln~eRi~yWL~~G-AQPT~~V~~LLk~~g~~~~   82 (155)
T PRK14520         27 TKRDGRAIEEIGRYHPKEEP---SLIEIDSERAQYWLSVG-AQPTEPVLALLKITGDWQK   82 (155)
T ss_pred             CCCCCCceeeeeccCCCCCC---ceEEEcHHHHHHHHHCC-CccCHHHHHHHHHcchhhh
Confidence            57999999999999998764   68999999999999999 9999999999999998754

>PRK00040 rpsP 30S ribosomal protein S16; Reviewed

Probab=99.89  E-value=9.7e-24  Score=140.34  Aligned_cols=50  Identities=38%  Similarity=0.678  Sum_probs=46.1

Q ss_pred             CCCCCccccccceecCCCCCCCcceeeeeHHHHHHHHhCCCcccCHHHHHHH
Q psy14541          1 MRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELF   52 (103)
Q Consensus         1 ~~RdGk~IE~LG~YdP~~~~~~ek~v~ln~eRi~yWL~~G~AqPS~tV~~LL   52 (103)
                      ++|||+|||+||+|||+++.. ++.|.||++||+|||++| ||||++|++||
T Consensus        26 ~~RdGk~iE~lG~ydP~~~~~-~~~i~ln~eri~~Wl~~G-Aqpt~~V~~Ll   75 (75)
T PRK00040         26 SPRDGRFIERVGFYNPLAKPA-EEEVKLDEERVLYWLGQG-AQPTDTVRRLL   75 (75)
T ss_pred             CCCCCCceeEEeecCCCCCCC-cceEEEcHHHHHHHHHCC-CccCHHHHHhC
Confidence            579999999999999998653 579999999999999999 99999999986

>PF00886 Ribosomal_S16: Ribosomal protein S16; InterPro: IPR000307 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.81  E-value=1.2e-20  Score=121.17  Aligned_cols=44  Identities=45%  Similarity=0.829  Sum_probs=41.4

Q ss_pred             CCCCCccccccceecCCCCCCCcceeeeeHHHHHHHHhCCCcccC
Q psy14541          1 MRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHIT   45 (103)
Q Consensus         1 ~~RdGk~IE~LG~YdP~~~~~~ek~v~ln~eRi~yWL~~G~AqPS   45 (103)
                      ++|||++||+||+|||++++.+++.+.||++||+|||++| ||||
T Consensus        19 ~~RdGk~iE~lG~YdP~~~~~~~~~~~l~~eri~~Wl~~G-AqpT   62 (62)
T PF00886_consen   19 SPRDGKFIEELGFYDPIPNPDEEKQIKLNFERIKYWLSKG-AQPT   62 (62)
T ss_dssp             SSTTSSESEEEEEEETTSSSSSSTSEEETHHHHHHHHHTT-EEEE
T ss_pred             cccccchhhccceEcCCCCCCCceeEEeCHHHHHHHHHcC-cCCC
Confidence            5799999999999999999766789999999999999999 9998

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S16 is one of the proteins from the small ribosomal subunit. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities [], groups: Eubacterial S16. Algal and plant chloroplast S16. Cyanelle S16. Neurospora crassa mitochondrial S24 (cyt-21). S16 proteins have about 100 amino-acid residues.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2Y14_P 3UZ6_S 2J02_P 1HNZ_P 3V26_P 3KNL_P 1N34_P 2J00_P 1HNW_P 3OHC_P ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	103
3bn0_A	112	30S ribosomal protein S16; ribonucleoprotein, ribo	1e-09
3bbn_P	88	Ribosomal protein S16; small ribosomal subunit, sp	7e-09
3pys_P	83	30S ribosomal protein S16; ribosome, IGR, IRES, PS	4e-08
3r8n_P	82	30S ribosomal protein S16; protein biosynthesis, R	7e-08

>3bn0_A 30S ribosomal protein S16; ribonucleoprotein, ribosome; 2.00A {Aquifex aeolicus} SCOP: d.27.1.1 Length = 112

 Score = 50.4 bits (121), Expect = 1e-09
 Identities = 15/104 (14%), Positives = 35/104 (33%), Gaps = 22/104 (21%)

Query: 1   MRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGT----SDIHITSPVRELFGLAG 56
             R  + I+ LGT+DP     ++ L+++  E+++ W+      S        + +    G
Sbjct: 27  SPREGKYIDILGTYDPK----RKVLINVYPEKVKEWVLKGVELSH-----RAKAILWNHG 77

Query: 57  LFPIYHRTYMNAWRNRNKAEAEIEKQKQEKLKAEQEANQDKEAA 100
           +                          +++   + +     EAA
Sbjct: 78  ILKEVVP------EGYEMKRVGDYYVFEKRESKKSKG---GEAA 112

>3bbn_P Ribosomal protein S16; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 88

 Score = 47.6 bits (114), Expect = 7e-09
 Identities = 12/67 (17%), Positives = 29/67 (43%), Gaps = 14/67 (20%)

Query: 1  MRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGT----SDIHITSPVRELFGLAG 56
           RR  + ++++G +DP+ ++       LN+  I  +L      ++      V ++   A 
Sbjct: 26 SRREGRDLQKVGFYDPIKSQ-----TYLNVPAILDFLEKGAQPTE-----TVYDILKRAE 75

Query: 57 LFPIYHR 63
          +F  +  
Sbjct: 76 VFKEFRL 82

>3pys_P 30S ribosomal protein S16; ribosome, IGR, IRES, PSIV, CRPV; 3.40A {Thermus thermophilus} PDB: 1pnx_P 1voq_P 1vos_P 1vov_P 1vox_P 1voz_P 1pns_P 3ms0_P 3mr8_P 3pyq_P 3pyn_P 3pyu_P 3fic_P* 1emw_A 1fjg_P* 1hnw_P* 1hnx_P* 1hnz_P* 1hr0_P 1i94_P* ... Length = 83

 Score = 45.6 bits (109), Expect = 4e-08
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 11/63 (17%)

Query: 1  MRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGT----SDIHITSPVRELFGLAG 56
           +R+ + IE++G +DP         + +++ER RYWL      +D       R L   AG
Sbjct: 26 RKRDGKYIEKIGYYDPRKTT--PDWLKVDVERARYWLSVGAQPTD-----TARRLLRQAG 78

Query: 57 LFP 59
          +F 
Sbjct: 79 VFR 81

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	103
3pys_P	83	30S ribosomal protein S16; ribosome, IGR, IRES, PS	99.92
3r8n_P	82	30S ribosomal protein S16; protein biosynthesis, R	99.92
3bn0_A	112	30S ribosomal protein S16; ribonucleoprotein, ribo	99.91
3bbn_P	88	Ribosomal protein S16; small ribosomal subunit, sp	99.9

>3pys_P 30S ribosomal protein S16; ribosome, IGR, IRES, PSIV, CRPV; 3.40A {Thermus thermophilus} PDB: 1pnx_P 1voq_P 1vos_P 1vov_P 1vox_P 1voz_P 1pns_P 3ms0_P 3mr8_P 3pyq_P 3pyn_P 3pyu_P 3fic_P* 1emw_A 1fjg_P* 1hnw_P* 1hnx_P* 1hnz_P* 1hr0_P 1i94_P* ...

Probab=99.92  E-value=7.5e-27  Score=157.01  Aligned_cols=57  Identities=32%  Similarity=0.642  Sum_probs=53.3

Q ss_pred             CCCCCccccccceecCCCCCCCcceeeeeHHHHHHHHhCCCcccCHHHHHHHHHcCCCCc
Q psy14541          1 MRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLFPI   60 (103)
Q Consensus         1 ~~RdGk~IE~LG~YdP~~~~~~ek~v~ln~eRi~yWL~~G~AqPS~tV~~LL~~ag~lp~   60 (103)
                      ++|||+|||+||||||+++.  ++.|.||+||++|||++| ||||++|++||+++|++.+
T Consensus        26 ~~RdGr~IE~lG~YnP~~~~--~~~i~l~~eri~~Wl~~G-AqptdtV~~ll~~~g~~~~   82 (83)
T 3pys_P           26 RKRDGKYIEKIGYYDPRKTT--PDWLKVDVERARYWLSVG-AQPTDTARRLLRQAGVFRQ   82 (83)
T ss_dssp             SCTTCCCSEECCCBCSSCCS--TTCBCCCHHHHHHHHHTC-CCBCSTTGGGTGGGCSSCC
T ss_pred             CCCCCCceeeeeEEcCCCCC--CceEEEchHHHHHHHHCC-CcCCHHHHHHHHHcCcccc
Confidence            58999999999999999853  578999999999999999 9999999999999999975

>3bn0_A 30S ribosomal protein S16; ribonucleoprotein, ribosome; 2.00A {Aquifex aeolicus} SCOP: d.27.1.1

Probab=99.91  E-value=1.8e-25  Score=157.43  Aligned_cols=56  Identities=20%  Similarity=0.451  Sum_probs=47.9

Q ss_pred             CCCCCccccccceecCCCCCCCcceeeeeHHHHHHHHhCCCcccCHHHHHHHHHcCCCCcc
Q psy14541          1 MRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLFPIY   61 (103)
Q Consensus         1 ~~RdGk~IE~LG~YdP~~~~~~ek~v~ln~eRi~yWL~~G~AqPS~tV~~LL~~ag~lp~~   61 (103)
                      ++|||+|||+||||||+ +   ++.|.||++||+|||++| ||||++|++||+++|+++.+
T Consensus        27 ~~RDGr~IE~lG~YnP~-~---~~~v~ld~eri~~WL~~G-AQPTdtV~~LL~~ag~~~~~   82 (112)
T 3bn0_A           27 SPREGKYIDILGTYDPK-R---KVLINVYPEKVKEWVLKG-VELSHRAKAILWNHGILKEV   82 (112)
T ss_dssp             ------CSEEEEEEETT-T---TEEEEECHHHHHHHHHTT-CEEEHHHHHHHHHTTHHHHH
T ss_pred             CCCCCCCEeEeeeccCC-C---cceEEEcHHHHHHHHHcC-CccCHHHHHHHHHcCCcccc
Confidence            58999999999999999 3   479999999999999999 99999999999999999987

>3bbn_P Ribosomal protein S16; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=99.90  E-value=1.7e-26  Score=156.80  Aligned_cols=58  Identities=22%  Similarity=0.437  Sum_probs=52.4

Q ss_pred             CCCCCccccccceecCCCCCCCcceeeeeHHHHHHHHhCCCcccCHHHHHHHHHcCCCCcchhh
Q psy14541          1 MRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLFPIYHRT   64 (103)
Q Consensus         1 ~~RdGk~IE~LG~YdP~~~~~~ek~v~ln~eRi~yWL~~G~AqPS~tV~~LL~~ag~lp~~p~~   64 (103)
                      ++|||+|||+||||||++++     +.||+|||+|||++| ||||++|++||+++|++++++..
T Consensus        26 ~~RDGr~IE~lG~YnP~~~~-----~~l~~eri~~Wl~~G-AqpTdtV~~ll~~~g~~~~~~~~   83 (88)
T 3bbn_P           26 SRREGRDLQKVGFYDPIKSQ-----TYLNVPAILDFLEKG-AQPTETVYDILKRAEVFKEFRLN   83 (88)
T ss_dssp             SCSSSCCSSCCCCBCTTSSC-----BCCCTTTSSSSTTSS-CEECTTTSSSSTTTTSSSCC---
T ss_pred             CCCCCCcEeEEEeccCCCCc-----eEEcHHHHHHHHHcC-CccCHHHHHHHHHcCCccccccc
Confidence            58999999999999999863     799999999999999 99999999999999999998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	103
d2uubp1	83	d.27.1.1 (P:1-83) Ribosomal protein S16 {Thermus t	1e-09
d2gy9p1	78	d.27.1.1 (P:1-78) Ribosomal protein S16 {Escherich	6e-07
d3bn0a1	101	d.27.1.1 (A:2-102) Ribosomal protein S16 {Aquifex	3e-06

>d2uubp1 d.27.1.1 (P:1-83) Ribosomal protein S16 {Thermus thermophilus [TaxId: 274]} Length = 83

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S16
superfamily: Ribosomal protein S16
family: Ribosomal protein S16
domain: Ribosomal protein S16
species: Thermus thermophilus [TaxId: 274]

 Score = 48.1 bits (115), Expect = 1e-09
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 3/58 (5%)

Query: 2  RRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLFP 59
          +R+ + IE++G +DP         + +++ER RYWL       T   R L   AG+F 
Sbjct: 27 KRDGKYIEKIGYYDPRKTT--PDWLKVDVERARYWLSVG-AQPTDTARRLLRQAGVFR 81

>d2gy9p1 d.27.1.1 (P:1-78) Ribosomal protein S16 {Escherichia coli [TaxId: 562]} Length = 78

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S16
superfamily: Ribosomal protein S16
family: Ribosomal protein S16
domain: Ribosomal protein S16
species: Escherichia coli [TaxId: 562]

 Score = 41.2 bits (97), Expect = 6e-07
 Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 2/51 (3%)

Query: 2  RRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELF 52
           RN + IE++G F+P+ +E +E+   L+++RI +W+G     I+  V  L 
Sbjct: 27 ARNGRFIERVGFFNPIASE-KEEGTRLDLDRIAHWVGQG-ATISDRVAALI 75

>d3bn0a1 d.27.1.1 (A:2-102) Ribosomal protein S16 {Aquifex aeolicus [TaxId: 63363]} Length = 101

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S16
superfamily: Ribosomal protein S16
family: Ribosomal protein S16
domain: Ribosomal protein S16
species: Aquifex aeolicus [TaxId: 63363]

 Score = 40.2 bits (94), Expect = 3e-06
 Identities = 12/85 (14%), Positives = 29/85 (34%), Gaps = 12/85 (14%)

Query: 2  RRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLFPIY 61
           R  + I+ LGT+DP           +  E+++ W+    + ++   + +    G+    
Sbjct: 27 PREGKYIDILGTYDPKRKVLIN----VYPEKVKEWVLKG-VELSHRAKAILWNHGILK-- 79

Query: 62 HRTYMNAWRNRNKAEAEIEKQKQEK 86
                      + +   +    EK
Sbjct: 80 -----EVVPEGYEMKRVGDYYVFEK 99

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	103
d2uubp1	83	Ribosomal protein S16 {Thermus thermophilus [TaxId	99.93
d3bn0a1	101	Ribosomal protein S16 {Aquifex aeolicus [TaxId: 63	99.9
d2gy9p1	78	Ribosomal protein S16 {Escherichia coli [TaxId: 56	99.9

>d2uubp1 d.27.1.1 (P:1-83) Ribosomal protein S16 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S16
superfamily: Ribosomal protein S16
family: Ribosomal protein S16
domain: Ribosomal protein S16
species: Thermus thermophilus [TaxId: 274]

Probab=99.93  E-value=1.4e-26  Score=153.84  Aligned_cols=57  Identities=32%  Similarity=0.642  Sum_probs=53.1

Q ss_pred             CCCCCccccccceecCCCCCCCcceeeeeHHHHHHHHhCCCcccCHHHHHHHHHcCCCCc
Q psy14541          1 MRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLFPI   60 (103)
Q Consensus         1 ~~RdGk~IE~LG~YdP~~~~~~ek~v~ln~eRi~yWL~~G~AqPS~tV~~LL~~ag~lp~   60 (103)
                      ++|||+|||+||+|||+.+.  ++.|.||+|||+|||++| ||||++|+.||+++|++|+
T Consensus        26 ~~rdGk~IE~lG~YnP~~~~--~~~i~l~~eRi~~Wl~~G-AqpS~tV~~ll~~~gi~~~   82 (83)
T d2uubp1          26 RKRDGKYIEKIGYYDPRKTT--PDWLKVDVERARYWLSVG-AQPTDTARRLLRQAGVFRQ   82 (83)
T ss_dssp             SCTTSCCSEEEEEECTTCCS--SCCEEECHHHHHHHHHHT-CEECHHHHHHHHHTTSSCC
T ss_pred             CCCCCcceeeeeEECCCCCC--CceEEECHHHHHHHHHCC-CCCCHHHHHHHHHcCCCcC
Confidence            58999999999999998653  578999999999999999 9999999999999999986

>d3bn0a1 d.27.1.1 (A:2-102) Ribosomal protein S16 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S16
superfamily: Ribosomal protein S16
family: Ribosomal protein S16
domain: Ribosomal protein S16
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.90  E-value=1.5e-25  Score=153.37  Aligned_cols=57  Identities=19%  Similarity=0.422  Sum_probs=47.1

Q ss_pred             CCCCCccccccceecCCCCCCCcceeeeeHHHHHHHHhCCCcccCHHHHHHHHHcCCCCcch
Q psy14541          1 MRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLFPIYH   62 (103)
Q Consensus         1 ~~RdGk~IE~LG~YdP~~~~~~ek~v~ln~eRi~yWL~~G~AqPS~tV~~LL~~ag~lp~~p   62 (103)
                      ++|||+|||+||+|||+.+    +.|.||.|||.|||++| ||||++|++||+++|++++++
T Consensus        26 ~~rdGk~iE~lG~ynP~~~----~~i~l~~eri~~Wl~~G-AqpS~tV~~lL~~~g~~~~~~   82 (101)
T d3bn0a1          26 SPREGKYIDILGTYDPKRK----VLINVYPEKVKEWVLKG-VELSHRAKAILWNHGILKEVV   82 (101)
T ss_dssp             ------CSEEEEEEETTTT----EEEEECHHHHHHHHHTT-CEEEHHHHHHHHHTTHHHHHC
T ss_pred             CCCCCcceeeeeEECCCCc----ccccccHHHHHHHHHcC-CCcCHHHHHHHHHcCCccccc
Confidence            5799999999999999743    57999999999999999 999999999999999998754

>d2gy9p1 d.27.1.1 (P:1-78) Ribosomal protein S16 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S16
superfamily: Ribosomal protein S16
family: Ribosomal protein S16
domain: Ribosomal protein S16
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=9.5e-25  Score=143.54  Aligned_cols=52  Identities=33%  Similarity=0.576  Sum_probs=48.4

Q ss_pred             CCCCCccccccceecCCCCCCCcceeeeeHHHHHHHHhCCCcccCHHHHHHHHH
Q psy14541          1 MRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGL   54 (103)
Q Consensus         1 ~~RdGk~IE~LG~YdP~~~~~~ek~v~ln~eRi~yWL~~G~AqPS~tV~~LL~~   54 (103)
                      ++|||+|||+||+|||+++.. ++.|.||+|||+|||++| ||||++|++||++
T Consensus        26 ~~rdgk~iE~lG~YnP~~~~~-~~~i~l~~eri~~Wl~~G-Aqps~~V~~LLkk   77 (78)
T d2gy9p1          26 NARNGRFIERVGFFNPIASEK-EEGTRLDLDRIAHWVGQG-ATISDRVAALIKE   77 (78)
T ss_dssp             SCTTSCCSEECCEECSSCCSC-SCCEECCHHHHHHHTTTT-CEECHHHHHHHHH
T ss_pred             CCCCCcceeeeeeECCcCCCC-ccceEecHHHHHHHHHCc-CcCCHHHHHHHhh
Confidence            589999999999999998863 567999999999999999 9999999999986