Psyllid ID: psy14548

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480--
MRFTLRRCASVSKMLDFYSQFNPSPLSIKQFIDFGLSASEEKSFMFLRKELPVRLANIMKEIHLLPDNLLRMPSVGLVNEWYAMSFDEILEFEKADSNSTDTLDKFCKALVKIRNRHSDVVQTMAQGVMELKDSHDVDHQTENSIQYFLDRFYMSRISIRMLINQHTLLFGDELTRGDSSLRHIGCIDPQCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLYHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALSNEANELLPIFNKTSSKFYRATIPTGDWSSTQSACMEHRHPTISQSKTSSKHVPSDAHTVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALSNEANELLPIFNKTSSKFYR
cccHHHHHHHHHHHHHHHHccccccccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEEcHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEcccccEEEEEcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccEEEEccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccEEEEccccccccEEEEEccccccccccccccccccccccc
ccHHHHHHHHHHHHHHHHHccccccccHHHHHHcccccccHHHHHHHHHHcHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEcccccHHHHHHHHHHHHHHHHHHHHcccccEEEEEcccccccccEEEEEcccHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEcccEEEEEEccccccccHHHHHHHHEEccccccccccccccccccccccccccHHHHHHHHHcccEEEEEEccccccEEEEEEccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccEEEEEcccccccEEEEEHHccccccccccccccccHHHcc
MRFTLRRCASVSKMLDfysqfnpsplsiKQFIDFGLSASEEKSFMFLRKELPVRLANIMKEIHllpdnllrmpsvglvnEWYAMSFDEILEFekadsnstdTLDKFCKALVKIRNRHSDVVQTMAQGVMelkdshdvdhqteNSIQYFLDRFYMSRISIRMLINQHtllfgdeltrgdsslrhigcidpqcdliGVVKDAYENARFLCEQYYlsspelkvtehneyekgepvriiyVPSHLYHMLFELFKNSmratvehhtdtdvlppievsvvrgkEDICVKmsdkgggiprSVTDMLFHYmystapqpsksdahtvplagygyglpisrlyaryfhgdimllscdglgTDAIIYLKALSNEANellpifnktsskfyratiptgdwsstqsacmehrhptisqsktsskhvpsdahtvplagygyglpisrlyaryfhgdimllscdglgTDAIIYLKALSNEANEllpifnktsskfyr
mrftlrrcASVSKMLDFYSQFNPSPLSIKQFIDFGLSASEEKSFMFLRKELPVRLANIMKEIHLLPDNLLRMPSVGLVNEWYAMSFDEILEFEkadsnstdTLDKFCKALVKIRNRHSDVVQTMAQGVMElkdshdvdhQTENSIQYFLDRFYMSRISIRMLINQHTLLFGDELTRGDSSLRHIGCIDPQCDLIGVVKDAYENARFLCEQYYLSSPELKVtehneyekgepVRIIYVPSHLYHMLFELFKNSMRATVEHhtdtdvlppievsvvrgKEDIcvkmsdkgggipRSVTDMLFHYMYSTAPQPSKSDAHTVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALSNEANELLPIFNKTSSKFYRATIPTGDWSSTQSACMEHRHPTisqsktsskhvpSDAHTVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALSneanellpifnktsskfyr
MRFTLRRCASVSKMLDFYSQFNPSPLSIKQFIDFGLSASEEKSFMFLRKELPVRLANIMKEIHLLPDNLLRMPSVGLVNEWYAMSFDEILEFEKADSNSTDTLDKFCKALVKIRNRHSDVVQTMAQGVMELKDSHDVDHQTENSIQYFLDRFYMSRISIRMLINQHTLLFGDELTRGDSSLRHIGCIDPQCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLYHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALSNEANELLPIFNKTSSKFYRATIPTGDWSSTQSACMEHRHPTISQSKTSSKHVPSDAHTVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALSNEANELLPIFNKTSSKFYR
*****RRCASVSKMLDFYSQFNPSPLSIKQFIDFGLSASEEKSFMFLRKELPVRLANIMKEIHLLPDNLLRMPSVGLVNEWYAMSFDEILEFEKADSNSTDTLDKFCKALVKIRNRHSDVVQTMAQGVMEL*******HQTENSIQYFLDRFYMSRISIRMLINQHTLLFGDELTRGDSSLRHIGCIDPQCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLYHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYST*********HTVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALSNEANELLPIFNKTSSKFYRATIPTGDW******************************TVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALSNEANELLPIF*********
*********SV**MLDFYSQFNPSPLSIKQFIDFGLSASEEKSFMFLRKELPVRLANIMKEIHLLPDNLLRMPSVGLVNEWYAMSFDEILEFEKADSNSTDTLDKFCKALVKIRNRHSDVVQTMAQG***************NSIQYFLDRFYMSRISIRMLINQHTLLFGDELTRGDSSLRHIGCIDPQCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLYHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMY******************YGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALSN**********KT*********PTGDWSSTQSACMEHRHPTI*******************AGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALSNEANELLPIFNK*******
MRFTLRRCASVSKMLDFYSQFNPSPLSIKQFIDFGLSASEEKSFMFLRKELPVRLANIMKEIHLLPDNLLRMPSVGLVNEWYAMSFDEILEFEKADSNSTDTLDKFCKALVKIRNRHSDVVQTMAQGVMELKDSHDVDHQTENSIQYFLDRFYMSRISIRMLINQHTLLFGDELTRGDSSLRHIGCIDPQCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLYHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALSNEANELLPIFNKTSSKFYRATIPTGD****************************DAHTVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALSNEANELLPIFNKTSSKFYR
MRFTLRRCASVSKMLDFYSQFNPSPLSIKQFIDFGLSASEEKSFMFLRKELPVRLANIMKEIHLLPDNLLRMPSVGLVNEWYAMSFDEILEFEKADSNSTDTLDKFCKALVKIRNRHSDVVQTMAQGVMELKDSHDVDHQTENSIQYFLDRFYMSRISIRMLINQHTLLFGDELTRGDSSLRHIGCIDPQCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLYHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALSNEANELLPIFNKTSSKFYRATIPTGDWSSTQ**************************TVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALSNEANELLPIFNKTS*****
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MRFTLRRCASVSKMLDFYSQFNPSPLSIKQFIDFGLSASEEKSFMFLRKELPVRLANIMKEIHLLPDNLLRMPSVGLVNEWYAMSFDEILEFEKADSNSTDTLDKFCKALVKIRNRHSDVVQTMAQGVMELKDSHDVDHQTENSIQYFLDRFYMSRISIRMLINQHTLLFGDELTRGDSSLRHIGCIDPQCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLYHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALSNEANELLPIFNKTSSKFYRATIPTGDWSSTQSACMEHRHPTISQSKTSSKHVPSDAHTVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALSNEANELLPIFNKTSSKFYR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query482 2.2.26 [Sep-21-2011]
P91622413 [Pyruvate dehydrogenase [ yes N/A 0.804 0.939 0.701 1e-161
Q63065434 [Pyruvate dehydrogenase [ yes N/A 0.796 0.884 0.582 1e-136
Q8BFP9434 [Pyruvate dehydrogenase [ yes N/A 0.794 0.882 0.581 1e-134
Q15118436 [Pyruvate dehydrogenase [ yes N/A 0.800 0.885 0.567 1e-133
Q922H2415 [Pyruvate dehydrogenase [ no N/A 0.825 0.959 0.569 1e-130
Q15120406 [Pyruvate dehydrogenase [ no N/A 0.784 0.931 0.585 1e-130
Q15119407 [Pyruvate dehydrogenase [ no N/A 0.782 0.926 0.572 1e-126
O54937412 [Pyruvate dehydrogenase [ no N/A 0.811 0.949 0.538 1e-126
Q9JK42407 [Pyruvate dehydrogenase [ no N/A 0.782 0.926 0.569 1e-126
O70571412 [Pyruvate dehydrogenase [ no N/A 0.792 0.927 0.551 1e-126
>sp|P91622|PDK_DROME [Pyruvate dehydrogenase [lipoamide]] kinase, mitochondrial OS=Drosophila melanogaster GN=Pdk PE=2 SV=2 Back     alignment and function desciption
 Score =  568 bits (1464), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 280/399 (70%), Positives = 327/399 (81%), Gaps = 11/399 (2%)

Query: 13  KMLDFYSQFNPSPLSIKQFIDFGLSASEEKSFMFLRKELPVRLANIMKEIHLLPDNLLRM 72
           KMLDFYS FNPSPLSIKQF+DFG +A E+KS++FLRKELPVRLANIMKEI LLPDNLL  
Sbjct: 20  KMLDFYSGFNPSPLSIKQFMDFGQNACEKKSYIFLRKELPVRLANIMKEIALLPDNLLHT 79

Query: 73  PSVGLVNEWYAMSFDEILEFEKADSNSTDTLDKFCKALVKIRNRHSDVVQTMAQGVMELK 132
            SV  V+ WY  SF+++L +EKA+  + D L KF   L  IRNRH+DVVQTMAQGV+E+K
Sbjct: 80  RSVSEVSSWYVKSFEDVLVYEKAEP-THDNLQKFVADLDLIRNRHNDVVQTMAQGVIEMK 138

Query: 133 DSH--DVDHQTENSIQYFLDRFYMSRISIRMLINQHTLLFGDELTRGDSSLRHIGCIDPQ 190
           ++    VD  TE+SIQYFLDR YMSRISIRMLINQHTLLFG     G    RHIGC+DP 
Sbjct: 139 ENEGGQVDAPTESSIQYFLDRLYMSRISIRMLINQHTLLFGGNPHAGG---RHIGCLDPA 195

Query: 191 CDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGE--PVRIIYVPSHLYHMLFEL 248
           CDL  VV+DAYENARFLC+QYYL+SP L++ +H+  E G+  P+R +YVPSHLY+MLFEL
Sbjct: 196 CDLSDVVRDAYENARFLCDQYYLTSPALEIQQHSS-EPGDNLPIRTVYVPSHLYYMLFEL 254

Query: 249 FKNSMRATVEHH--TDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYST 306
           FKNSMRA VEHH   + D LPP++V++ +GKEDICVK+SD+GGGIPRS TD LF YMYST
Sbjct: 255 FKNSMRAVVEHHGHDNNDTLPPLKVAICKGKEDICVKISDQGGGIPRSQTDQLFKYMYST 314

Query: 307 APQPSKSDAHTVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALSNEANE 366
           APQPSKSD HTVPLAGYGYGLPISRLYARYFHGDI+LLSC+G GTDAIIYLKALS+EANE
Sbjct: 315 APQPSKSDLHTVPLAGYGYGLPISRLYARYFHGDIVLLSCEGFGTDAIIYLKALSDEANE 374

Query: 367 LLPIFNKTSSKFYRATIPTGDWSSTQSACMEHRHPTISQ 405
           LLPIFNKTSSKFYRAT+PTGDWS+      + +   ++Q
Sbjct: 375 LLPIFNKTSSKFYRATVPTGDWSNQVKYAKKKKTSAVNQ 413
Inhibits the mitochondrial pyruvate dehydrogenase complex by phosphorylation of the E1 alpha subunit, thus contributing to the regulation of glucose metabolism.
Drosophila melanogaster (taxid: 7227)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 2
>sp|Q63065|PDK1_RAT [Pyruvate dehydrogenase [lipoamide]] kinase isozyme 1, mitochondrial OS=Rattus norvegicus GN=Pdk1 PE=1 SV=1 Back     alignment and function description
>sp|Q8BFP9|PDK1_MOUSE [Pyruvate dehydrogenase [lipoamide]] kinase isozyme 1, mitochondrial OS=Mus musculus GN=Pdk1 PE=2 SV=2 Back     alignment and function description
>sp|Q15118|PDK1_HUMAN [Pyruvate dehydrogenase [lipoamide]] kinase isozyme 1, mitochondrial OS=Homo sapiens GN=PDK1 PE=1 SV=1 Back     alignment and function description
>sp|Q922H2|PDK3_MOUSE [Pyruvate dehydrogenase [lipoamide]] kinase isozyme 3, mitochondrial OS=Mus musculus GN=Pdk3 PE=2 SV=1 Back     alignment and function description
>sp|Q15120|PDK3_HUMAN [Pyruvate dehydrogenase [lipoamide]] kinase isozyme 3, mitochondrial OS=Homo sapiens GN=PDK3 PE=1 SV=1 Back     alignment and function description
>sp|Q15119|PDK2_HUMAN [Pyruvate dehydrogenase [lipoamide]] kinase isozyme 2, mitochondrial OS=Homo sapiens GN=PDK2 PE=1 SV=2 Back     alignment and function description
>sp|O54937|PDK4_RAT [Pyruvate dehydrogenase [lipoamide]] kinase isozyme 4, mitochondrial OS=Rattus norvegicus GN=Pdk4 PE=1 SV=1 Back     alignment and function description
>sp|Q9JK42|PDK2_MOUSE [Pyruvate dehydrogenase [lipoamide]] kinase isozyme 2, mitochondrial OS=Mus musculus GN=Pdk2 PE=1 SV=2 Back     alignment and function description
>sp|O70571|PDK4_MOUSE [Pyruvate dehydrogenase [lipoamide]] kinase isozyme 4, mitochondrial OS=Mus musculus GN=Pdk4 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query482
345495629417 PREDICTED: Pyruvate dehydrogenase [lipoa 0.836 0.966 0.759 0.0
345495631429 PREDICTED: Pyruvate dehydrogenase [lipoa 0.819 0.920 0.758 1e-179
91085723421 PREDICTED: similar to pyruvate dehydroge 0.829 0.950 0.730 1e-177
66522249416 PREDICTED: [Pyruvate dehydrogenase [lipo 0.829 0.961 0.735 1e-175
380030668416 PREDICTED: Pyruvate dehydrogenase [lipoa 0.829 0.961 0.735 1e-175
340723740416 PREDICTED: Pyruvate dehydrogenase [lipoa 0.836 0.968 0.722 1e-174
350426456416 PREDICTED: Pyruvate dehydrogenase [lipoa 0.836 0.968 0.722 1e-173
328777299412 PREDICTED: [Pyruvate dehydrogenase [lipo 0.821 0.961 0.732 1e-172
383857387416 PREDICTED: Pyruvate dehydrogenase [lipoa 0.846 0.980 0.710 1e-172
383857385412 PREDICTED: Pyruvate dehydrogenase [lipoa 0.838 0.980 0.710 1e-170
>gi|345495629|ref|XP_003427543.1| PREDICTED: Pyruvate dehydrogenase [lipoamide] kinase-like isoform 2 [Nasonia vitripennis] Back     alignment and taxonomy information
 Score =  645 bits (1663), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/408 (75%), Positives = 350/408 (85%), Gaps = 5/408 (1%)

Query: 1   MRFTLRRCASVSKMLDFYSQFNPSPLSIKQFIDFGLSASEEKSFMFLRKELPVRLANIMK 60
           M+ T +   +++KMLDFYSQFNPSPLSIKQFIDFGLSA E KSF+FLRKELPVRLANIMK
Sbjct: 1   MKLTQKCLGNMAKMLDFYSQFNPSPLSIKQFIDFGLSACERKSFIFLRKELPVRLANIMK 60

Query: 61  EIHLLPDNLLRMPSVGLVNEWYAMSFDEILEFEKADSNSTDTLDKFCKALVKIRNRHSDV 120
           EIHLLP+NLLRMPSVG+VN  Y  SF+EI+ FEKAD N T TLD FC+ALVKIRNRH+DV
Sbjct: 61  EIHLLPENLLRMPSVGIVNNLYVTSFEEIIHFEKADVNDT-TLDTFCQALVKIRNRHTDV 119

Query: 121 VQTMAQGVMELKDSHDVDHQTENSIQYFLDRFYMSRISIRMLINQHTLLFGDELTRGDSS 180
           VQTMAQGV+ELK+SHDVD QTENSIQYFLDRFYMSRISIRMLINQHTLLFG  L   +  
Sbjct: 120 VQTMAQGVLELKESHDVDAQTENSIQYFLDRFYMSRISIRMLINQHTLLFGGVLNGHN-- 177

Query: 181 LRHIGCIDPQCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSH 240
            RHIGCIDP CD+I VVKDAYENARFLC+QYY++SP+L V +HNE E+G  ++I+YVPSH
Sbjct: 178 -RHIGCIDPYCDVISVVKDAYENARFLCDQYYMASPDLVVQQHNELERGNEIKIVYVPSH 236

Query: 241 LYHMLFELFKNSMRATVEHH-TDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDML 299
           LYHMLFELFKNSMRA +E+   D D  PP+EV+VVRGKEDICVKMSD+GGGIPRS  D L
Sbjct: 237 LYHMLFELFKNSMRAVMEYRGQDADNYPPLEVTVVRGKEDICVKMSDRGGGIPRSQMDNL 296

Query: 300 FHYMYSTAPQPSKSDAHTVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKA 359
           F YMYSTAPQPSKSDAHTVPLAGYGYGLP+SRLYARYF GD++LLSC+G GTDAIIYLKA
Sbjct: 297 FKYMYSTAPQPSKSDAHTVPLAGYGYGLPLSRLYARYFMGDLVLLSCEGFGTDAIIYLKA 356

Query: 360 LSNEANELLPIFNKTSSKFYRATIPTGDWSSTQSACMEHRHPTISQSK 407
           LSNEANELLPIFNKTS+KFYR  +PT DWS+     M  R  T+S ++
Sbjct: 357 LSNEANELLPIFNKTSTKFYRTPLPTADWSNQCGNSMSTRQMTMSHNQ 404

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom:

>gi|345495631|ref|XP_001605707.2| PREDICTED: Pyruvate dehydrogenase [lipoamide] kinase-like isoform 1 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|91085723|ref|XP_973304.1| PREDICTED: similar to pyruvate dehydrogenase kinase [Tribolium castaneum] gi|270010109|gb|EFA06557.1| hypothetical protein TcasGA2_TC009468 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|66522249|ref|XP_393904.2| PREDICTED: [Pyruvate dehydrogenase [lipoamide]] kinase, mitochondrial isoform 2 [Apis mellifera] Back     alignment and taxonomy information
>gi|380030668|ref|XP_003698965.1| PREDICTED: Pyruvate dehydrogenase [lipoamide] kinase-like [Apis florea] Back     alignment and taxonomy information
>gi|340723740|ref|XP_003400247.1| PREDICTED: Pyruvate dehydrogenase [lipoamide] kinase-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|350426456|ref|XP_003494442.1| PREDICTED: Pyruvate dehydrogenase [lipoamide] kinase-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|328777299|ref|XP_003249312.1| PREDICTED: [Pyruvate dehydrogenase [lipoamide]] kinase, mitochondrial isoform 1 [Apis mellifera] Back     alignment and taxonomy information
>gi|383857387|ref|XP_003704186.1| PREDICTED: Pyruvate dehydrogenase [lipoamide] kinase-like isoform 2 [Megachile rotundata] Back     alignment and taxonomy information
>gi|383857385|ref|XP_003704185.1| PREDICTED: Pyruvate dehydrogenase [lipoamide] kinase-like isoform 1 [Megachile rotundata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query482
FB|FBgn0017558413 Pdk "Pyruvate dehydrogenase ki 0.813 0.949 0.699 2.1e-148
UNIPROTKB|F1MA54434 Pdk1 "[Pyruvate dehydrogenase 0.796 0.884 0.582 2.1e-123
RGD|69427434 Pdk1 "pyruvate dehydrogenase k 0.796 0.884 0.582 2.7e-123
UNIPROTKB|F1NLP2408 PDK1 "Uncharacterized protein" 0.792 0.936 0.582 5.7e-123
UNIPROTKB|E1B8C5438 PDK1 "Uncharacterized protein" 0.798 0.878 0.576 1.2e-122
MGI|MGI:1926119434 Pdk1 "pyruvate dehydrogenase k 0.792 0.880 0.582 1.9e-122
UNIPROTKB|F1S069438 PDK1 "Uncharacterized protein" 0.798 0.878 0.573 5.1e-122
UNIPROTKB|Q15118436 PDK1 "[Pyruvate dehydrogenase 0.798 0.883 0.568 3.6e-121
UNIPROTKB|Q5ZLT2406 PDK3 "Uncharacterized protein" 0.790 0.938 0.581 2.5e-120
UNIPROTKB|E9PD65456 PDK1 "[Pyruvate dehydrogenase 0.601 0.635 0.564 1.2e-119
FB|FBgn0017558 Pdk "Pyruvate dehydrogenase kinase" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 1449 (515.1 bits), Expect = 2.1e-148, P = 2.1e-148
 Identities = 282/403 (69%), Positives = 330/403 (81%)

Query:     9 ASVSKMLDFYSQFNPSPLSIKQFIDFGLSASEEKSFMFLRKELPVRLANIMKEIHLLPDN 68
             AS++KMLDFYS FNPSPLSIKQF+DFG +A E+KS++FLRKELPVRLANIMKEI LLPDN
Sbjct:    16 ASLAKMLDFYSGFNPSPLSIKQFMDFGQNACEKKSYIFLRKELPVRLANIMKEIALLPDN 75

Query:    69 LLRMPSVGLVNEWYAMSFDEILEFEKADSNSTDTLDKFCKALVKIRNRHSDVVQTMAQGV 128
             LL   SV  V+ WY  SF+++L +EKA+    D L KF   L  IRNRH+DVVQTMAQGV
Sbjct:    76 LLHTRSVSEVSSWYVKSFEDVLVYEKAEPTH-DNLQKFVADLDLIRNRHNDVVQTMAQGV 134

Query:   129 MELKDSH--DVDHQTENSIQYFLDRFYMSRISIRMLINQHTLLFGDELTRGDSSLRHIGC 186
             +E+K++    VD  TE+SIQYFLDR YMSRISIRMLINQHTLLFG     G    RHIGC
Sbjct:   135 IEMKENEGGQVDAPTESSIQYFLDRLYMSRISIRMLINQHTLLFGGNPHAGG---RHIGC 191

Query:   187 IDPQCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGE--PVRIIYVPSHLYHM 244
             +DP CDL  VV+DAYENARFLC+QYYL+SP L++ +H+  E G+  P+R +YVPSHLY+M
Sbjct:   192 LDPACDLSDVVRDAYENARFLCDQYYLTSPALEIQQHSS-EPGDNLPIRTVYVPSHLYYM 250

Query:   245 LFELFKNSMRATVEHH--TDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHY 302
             LFELFKNSMRA VEHH   + D LPP++V++ +GKEDICVK+SD+GGGIPRS TD LF Y
Sbjct:   251 LFELFKNSMRAVVEHHGHDNNDTLPPLKVAICKGKEDICVKISDQGGGIPRSQTDQLFKY 310

Query:   303 MYSTAPQPSKSDAHTVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALSN 362
             MYSTAPQPSKSD HTVPLAGYGYGLPISRLYARYFHGDI+LLSC+G GTDAIIYLKALS+
Sbjct:   311 MYSTAPQPSKSDLHTVPLAGYGYGLPISRLYARYFHGDIVLLSCEGFGTDAIIYLKALSD 370

Query:   363 EANELLPIFNKTSSKFYRATIPTGDWSSTQSACMEHRHPTISQ 405
             EANELLPIFNKTSSKFYRAT+PTGDWS+      + +   ++Q
Sbjct:   371 EANELLPIFNKTSSKFYRATVPTGDWSNQVKYAKKKKTSAVNQ 413
GO:0004740 "pyruvate dehydrogenase (acetyl-transferring) kinase activity" evidence=ISS;NAS
GO:0005759 "mitochondrial matrix" evidence=ISS;NAS
GO:0006090 "pyruvate metabolic process" evidence=ISS
GO:0005524 "ATP binding" evidence=IEA
UNIPROTKB|F1MA54 Pdk1 "[Pyruvate dehydrogenase [lipoamide]] kinase isozyme 1, mitochondrial" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
RGD|69427 Pdk1 "pyruvate dehydrogenase kinase, isozyme 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1NLP2 PDK1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1B8C5 PDK1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:1926119 Pdk1 "pyruvate dehydrogenase kinase, isoenzyme 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1S069 PDK1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q15118 PDK1 "[Pyruvate dehydrogenase [lipoamide]] kinase isozyme 1, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZLT2 PDK3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E9PD65 PDK1 "[Pyruvate dehydrogenase [lipoamide]] kinase isozyme 1, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q922H2PDK3_MOUSE2, ., 7, ., 1, 1, ., 20.56960.82570.9590noN/A
O54937PDK4_RAT2, ., 7, ., 1, 1, ., 20.53800.81120.9490noN/A
Q9SBJ1PDK_ARATH2, ., 7, ., 1, 1, ., 20.41120.67840.8934yesN/A
Q16654PDK4_HUMAN2, ., 7, ., 1, 1, ., 20.54050.81120.9513noN/A
P91622PDK_DROME2, ., 7, ., 1, 1, ., 20.70170.80490.9394yesN/A
Q63065PDK1_RAT2, ., 7, ., 1, 1, ., 20.58220.79660.8847yesN/A
O88345PDK4_SPETR2, ., 7, ., 1, 1, ., 20.54380.80700.9441N/AN/A
Q15118PDK1_HUMAN2, ., 7, ., 1, 1, ., 20.56740.80080.8853yesN/A
Q8BFP9PDK1_MOUSE2, ., 7, ., 1, 1, ., 20.58120.79460.8824yesN/A
Q02332PDHK2_CAEEL2, ., 7, ., 1, 1, ., 20.54190.79660.9576yesN/A
Q9P6P9PDK_SCHPO2, ., 7, ., 1, 1, ., 20.32400.71360.8094yesN/A
Q1KMR4PDK4_RHIFE2, ., 7, ., 1, 1, ., 20.54290.81120.9490N/AN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer2.7.11.20.946
3rd Layer2.7.110.963

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query482
pfam10436163 pfam10436, BCDHK_Adom3, Mitochondrial branched-cha 2e-64
smart00387111 smart00387, HATPase_c, Histidine kinase-like ATPas 1e-18
pfam02518111 pfam02518, HATPase_c, Histidine kinase-, DNA gyras 2e-18
cd00075103 cd00075, HATPase_c, Histidine kinase-like ATPases; 9e-16
COG0642336 COG0642, BaeS, Signal transduction histidine kinas 3e-10
smart00387111 smart00387, HATPase_c, Histidine kinase-like ATPas 0.002
cd00075103 cd00075, HATPase_c, Histidine kinase-like ATPases; 0.002
PRK11360607 PRK11360, PRK11360, sensory histidine kinase AtoS; 0.003
pfam02518111 pfam02518, HATPase_c, Histidine kinase-, DNA gyras 0.004
>gnl|CDD|220754 pfam10436, BCDHK_Adom3, Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase Back     alignment and domain information 
 Score =  205 bits (524), Expect = 2e-64
 Identities = 77/169 (45%), Positives = 104/169 (61%), Gaps = 9/169 (5%)

Query: 24  SPLSIKQFIDFGLSASEE---KSFMFLRKELPVRLANIMKEIHLLPDNLLRMPSVGLVNE 80
           +PLS++Q + FG + +E+   KS  FLR+ELPVRLA+ ++E+ LLP  L+  PS+  V E
Sbjct: 1   TPLSLRQLLQFGRNPTEKTLLKSAQFLREELPVRLAHRIRELQLLPYGLVANPSILQVYE 60

Query: 81  WYAMSFDEILEFEKADSNSTDTLDKFCKALVKIRNRHSDVVQTMAQGVMELKDSHDVDHQ 140
           WY  SF+E+  F      + +  +KFC  L  I +RH++VV T+AQGV+ELKD  D    
Sbjct: 61  WYLQSFEELRSFP--PPKTLEDNEKFCDLLRDILDRHNNVVPTLAQGVLELKDLLDP--V 116

Query: 141 TENSIQYFLDRFYMSRISIRMLINQHTLLFGDELTRGDSSLRHIGCIDP 189
            E+ IQYFLDRF  SRI IRML  QH  L   E T       ++G ID 
Sbjct: 117 PEDEIQYFLDRFLRSRIGIRMLAEQHLALT--ENTHSPKHPDYVGIIDT 163

Catabolism and synthesis of leucine, isoleucine and valine are finely balanced, allowing the body to make the most of dietary input but removing excesses to prevent toxic build-up of their corresponding keto-acids. This is the butyryl-CoA dehydrogenase, subunit A domain 3, a largely alpha-helical bundle of the enzyme BCDHK. This enzyme is the regulator of the dehydrogenase complex that breaks branched-chain amino-acids down, by phosphorylating and thereby inactivating it when synthesis is required. The domain is associated with family HATPase_c pfam02518 which is towards the C-terminal. Length = 163
>gnl|CDD|214643 smart00387, HATPase_c, Histidine kinase-like ATPases Back     alignment and domain information
>gnl|CDD|217081 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Back     alignment and domain information
>gnl|CDD|238030 cd00075, HATPase_c, Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins Back     alignment and domain information
>gnl|CDD|223715 COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|214643 smart00387, HATPase_c, Histidine kinase-like ATPases Back     alignment and domain information
>gnl|CDD|238030 cd00075, HATPase_c, Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins Back     alignment and domain information
>gnl|CDD|236901 PRK11360, PRK11360, sensory histidine kinase AtoS; Provisional Back     alignment and domain information
>gnl|CDD|217081 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 482
KOG0787|consensus414 100.0
PF10436164 BCDHK_Adom3: Mitochondrial branched-chain alpha-ke 100.0
COG5002459 VicK Signal transduction histidine kinase [Signal 100.0
COG2205890 KdpD Osmosensitive K+ channel histidine kinase [Si 99.97
PRK09303380 adaptive-response sensory kinase; Validated 99.96
PRK10618894 phosphotransfer intermediate protein in two-compon 99.95
COG4191603 Signal transduction histidine kinase regulating C4 99.95
PRK11006430 phoR phosphate regulon sensor protein; Provisional 99.95
PRK11091 779 aerobic respiration control sensor protein ArcB; P 99.94
PRK10841 924 hybrid sensory kinase in two-component regulatory 99.94
PRK10815485 sensor protein PhoQ; Provisional 99.94
TIGR02956 968 TMAO_torS TMAO reductase sytem sensor TorS. This p 99.94
PRK15347 921 two component system sensor kinase SsrA; Provision 99.94
PRK10604433 sensor protein RstB; Provisional 99.94
TIGR02938494 nifL_nitrog nitrogen fixation negative regulator N 99.94
PRK11107 919 hybrid sensory histidine kinase BarA; Provisional 99.93
PRK11466 914 hybrid sensory histidine kinase TorS; Provisional 99.93
PRK13837828 two-component VirA-like sensor kinase; Provisional 99.93
PRK10755356 sensor protein BasS/PmrB; Provisional 99.93
PRK10549466 signal transduction histidine-protein kinase BaeS; 99.93
PRK10364457 sensor protein ZraS; Provisional 99.93
PRK10490895 sensor protein KdpD; Provisional 99.93
TIGR03785703 marine_sort_HK proteobacterial dedicated sortase s 99.92
TIGR01386457 cztS_silS_copS heavy metal sensor kinase. Members 99.92
COG4251750 Bacteriophytochrome (light-regulated signal transd 99.92
PRK09835482 sensor kinase CusS; Provisional 99.92
PRK10337449 sensor protein QseC; Provisional 99.91
PRK09959 1197 hybrid sensory histidine kinase in two-component r 99.91
PRK09467435 envZ osmolarity sensor protein; Provisional 99.91
PRK11100475 sensory histidine kinase CreC; Provisional 99.91
PRK09470461 cpxA two-component sensor protein; Provisional 99.9
COG3852363 NtrB Signal transduction histidine kinase, nitroge 99.9
TIGR02966333 phoR_proteo phosphate regulon sensor kinase PhoR. 99.9
TIGR02916679 PEP_his_kin putative PEP-CTERM system histidine ki 99.9
COG5000712 NtrY Signal transduction histidine kinase involved 99.9
PRK11073348 glnL nitrogen regulation protein NR(II); Provision 99.89
PRK13557540 histidine kinase; Provisional 99.88
PRK11360607 sensory histidine kinase AtoS; Provisional 99.88
COG0642336 BaeS Signal transduction histidine kinase [Signal 99.86
PF02518111 HATPase_c: Histidine kinase-, DNA gyrase B-, and H 99.84
PRK15053545 dpiB sensor histidine kinase DpiB; Provisional 99.83
PRK11086542 sensory histidine kinase DcuS; Provisional 99.81
PRK13560807 hypothetical protein; Provisional 99.8
KOG0787|consensus414 99.8
COG3290537 CitA Signal transduction histidine kinase regulati 99.78
PRK11644495 sensory histidine kinase UhpB; Provisional 99.76
COG4192673 Signal transduction histidine kinase regulating ph 99.75
PRK10547670 chemotaxis protein CheA; Provisional 99.68
PRK10935565 nitrate/nitrite sensor protein NarQ; Provisional 99.64
PRK13559361 hypothetical protein; Provisional 99.64
PRK10600569 nitrate/nitrite sensor protein NarX; Provisional 99.6
PRK04184 535 DNA topoisomerase VI subunit B; Validated 99.55
smart00387111 HATPase_c Histidine kinase-like ATPases. Histidine 99.52
COG0643716 CheA Chemotaxis protein histidine kinase and relat 99.48
TIGR01052 488 top6b DNA topoisomerase VI, B subunit. This model 99.4
cd00075103 HATPase_c Histidine kinase-like ATPases; This fami 99.38
PRK14868 795 DNA topoisomerase VI subunit B; Provisional 99.35
TIGR01925137 spIIAB anti-sigma F factor. This model describes t 99.31
PRK14867 659 DNA topoisomerase VI subunit B; Provisional 99.31
COG3850574 NarQ Signal transduction histidine kinase, nitrate 99.29
COG4585365 Signal transduction histidine kinase [Signal trans 99.26
PRK03660146 anti-sigma F factor; Provisional 99.23
COG1389 538 DNA topoisomerase VI, subunit B [DNA replication, 99.16
COG3920221 Signal transduction histidine kinase [Signal trans 99.09
PRK04069161 serine-protein kinase RsbW; Provisional 99.06
COG3851497 UhpB Signal transduction histidine kinase, glucose 99.04
TIGR01924159 rsbW_low_gc serine-protein kinase RsbW. This model 98.89
PF14501100 HATPase_c_5: GHKL domain 98.78
COG2972456 Predicted signal transduction protein with a C-ter 98.57
TIGR00585312 mutl DNA mismatch repair protein MutL. All protein 98.52
COG3275557 LytS Putative regulator of cell autolysis [Signal 98.52
PF13581125 HATPase_c_2: Histidine kinase-like ATPase domain 98.42
COG4564459 Signal transduction histidine kinase [Signal trans 98.38
KOG0519|consensus 786 98.2
PF13589137 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and 98.03
COG2172146 RsbW Anti-sigma regulatory factor (Ser/Thr protein 97.99
PRK00095 617 mutL DNA mismatch repair protein; Reviewed 97.86
PRK05559 631 DNA topoisomerase IV subunit B; Reviewed 97.48
TIGR01059 654 gyrB DNA gyrase, B subunit. This model describes t 96.83
PRK05644 638 gyrB DNA gyrase subunit B; Validated 96.79
PRK05218 613 heat shock protein 90; Provisional 96.79
COG0323 638 MutL DNA mismatch repair enzyme (predicted ATPase) 96.68
smart00433 594 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomeras 96.62
PF0051268 HisKA: His Kinase A (phospho-acceptor) domain; Int 96.61
COG0326 623 HtpG Molecular chaperone, HSP90 family [Posttransl 96.55
PRK14083 601 HSP90 family protein; Provisional 96.48
TIGR01055 625 parE_Gneg DNA topoisomerase IV, B subunit, proteob 96.33
PTZ00130 814 heat shock protein 90; Provisional 96.29
PRK14939 756 gyrB DNA gyrase subunit B; Provisional 95.6
PTZ00272 701 heat shock protein 83 kDa (Hsp83); Provisional 95.09
COG5381184 Uncharacterized protein conserved in bacteria [Fun 94.93
TIGR01058 637 parE_Gpos DNA topoisomerase IV, B subunit, Gram-po 94.72
KOG1979|consensus 694 94.31
PLN03237 1465 DNA topoisomerase 2; Provisional 93.0
PHA02569 602 39 DNA topoisomerase II large subunit; Provisional 92.59
COG0187 635 GyrB Type IIA topoisomerase (DNA gyrase/topo II, t 91.56
PTZ00108 1388 DNA topoisomerase 2-like protein; Provisional 91.5
KOG1977|consensus 1142 91.21
cd0008265 HisKA Histidine Kinase A (dimerization/phosphoacce 91.04
TIGR02956 968 TMAO_torS TMAO reductase sytem sensor TorS. This p 90.98
smart0038866 HisKA His Kinase A (phosphoacceptor) domain. Dimer 90.15
KOG1978|consensus 672 89.87
PF02518111 HATPase_c: Histidine kinase-, DNA gyrase B-, and H 89.59
PLN03128 1135 DNA topoisomerase 2; Provisional 89.08
PTZ00109 903 DNA gyrase subunit b; Provisional 84.49
PRK09303380 adaptive-response sensory kinase; Validated 84.3
>KOG0787|consensus Back     alignment and domain information 
Probab=100.00  E-value=2.2e-72  Score=542.41  Aligned_cols=371  Identities=58%  Similarity=0.981  Sum_probs=349.6

Q ss_pred             HHHHHHHhhcCCCCcccHHHHHhcC---CCcChhhHHHHHHHHHHHHHHHHHHHHhcCChhhhcCChHHHHHHHHHHHHH
Q psy14548         11 VSKMLDFYSQFNPSPLSIKQFIDFG---LSASEEKSFMFLRKELPVRLANIMKEIHLLPDNLLRMPSVGLVNEWYAMSFD   87 (482)
Q Consensus        11 ~~~~~~~y~~~~~~~~sl~~l~~~g---~~~~~~~s~~~l~~eLp~Rla~ri~~l~~lp~~l~~~~~i~~v~~~y~~sf~   87 (482)
                      +.++|++|++++|+|+|++||++||   .+.++.+|+.||++|||+|||+|+++|+.||+.+..||+|..|++||.++|+
T Consensus        38 ~~~~i~~~s~f~pspls~kq~l~fg~~~t~~~e~~S~~flr~ELpvRlA~~lkeiq~LP~nl~~npsi~~V~s~Y~~sfe  117 (414)
T KOG0787|consen   38 LPEYINPYSSFPPSPLSLKQFLDFGSDLTNACEKTSGIFLRQELPVRLANRLKEIQLLPFNLVNNPSIQLVQSWYIRSFE  117 (414)
T ss_pred             hHHHhchhhcCCCCcccHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhccCchHHHHHHHHHHHHH
Confidence            7999999999999999999999999   4678899999999999999999999999999999999999999999999999


Q ss_pred             HHHcccccCCCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhhHHHHHHHHH
Q psy14548         88 EILEFEKADSNSTDTLDKFCKALVKIRNRHSDVVQTMAQGVMELKDSHDVDHQTENSIQYFLDRFYMSRISIRMLINQHT  167 (482)
Q Consensus        88 ~l~~~~~~~~~~~~~~~~f~~~l~~~l~~~~~~i~~la~g~~e~~~~~~~~~~~~e~~~~~Ld~i~~sri~~r~Li~~~l  167 (482)
                      ++++++.+.+ +.+...+|++.+..++.+|.+++.++|+|++|+++... |+.+.+.++.|||+++++||++|||++||+
T Consensus       118 ~ll~~~~~~~-~~~~~~qf~d~l~~l~~rH~dvv~~lA~Gl~E~~~~~~-dp~~~~~iqyFLdr~y~sRIsiRMLv~qh~  195 (414)
T KOG0787|consen  118 DLLEFPTISP-DLEDLSQFNDLLNTLRNRHNDVVPTLAQGLIEYREKDG-DPVTEKNIQYFLDRFYMSRISIRMLVNQHL  195 (414)
T ss_pred             HHHccCCCCc-chhhHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            9999999886 68889999999999999999999999999999999876 777789999999999999999999999999


Q ss_pred             HhhccccccCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeccCCCCCeEEE-echhHHHHHHH
Q psy14548        168 LLFGDELTRGDSSLRHIGCIDPQCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRII-YVPSHLYHMLF  246 (482)
Q Consensus       168 ~L~~~~~~~~~~~~~~ig~i~~~~~l~~li~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~v~-~d~~~L~~il~  246 (482)
                      .|+.   +..+..++++|+|+++|++.++|+++.+.++.+|+.+|..+|++.|+.+.+      ..+. +.|.+|.+++.
T Consensus       196 ~l~~---~~kp~~~~~iG~I~~~c~v~~vi~~a~e~ar~lCd~yy~~sPel~i~~~~a------~~~~vyvPshL~ymlf  266 (414)
T KOG0787|consen  196 LLFA---SGKPDHPRHIGIIDPRCSVKKVIKDASENARFLCDQYYLNSPELIIEGHNA------LSFTVYVPSHLYYMLF  266 (414)
T ss_pred             heec---CCCCCCcceeeeeCCCCCHHHHHHHHHHHHHHHHHHhccCCCeeEecCccc------ccCccccchHHHHHHH
Confidence            9997   233666789999999999999999999999999999999999999987553      3344 89999999999


Q ss_pred             HHHHHHHHHhhhcCCCCCC-CCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCCCCCCCCccc
Q psy14548        247 ELFKNSMRATVEHHTDTDV-LPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVPLAGYGY  325 (482)
Q Consensus       247 NLl~NAik~t~~~~~~~~~-~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~~~~~~G~GL  325 (482)
                      +|++||++||.+.+..+.. .|||.|.+..+++++.|+|+|.|+||+.+.++++|.+.|+|++.+..|+.+..+..|.|+
T Consensus       267 ElfKNamrATve~h~~~~~~~ppI~V~V~~gdeDl~ikISDrGGGV~~~~~drlf~Y~ySTa~~~~~d~~~~~plaGfG~  346 (414)
T KOG0787|consen  267 ELFKNAMRATVEHHGDDGDELPPIKVTVAKGDEDLLIKISDRGGGVPHRDIDRLFSYMYSTAPAPSSDNNRTAPLAGFGF  346 (414)
T ss_pred             HHHHHHHHHHHHHhccCCCCCCCeEEEEecCCcceEEEEecCCCCcChhHHHHHHhhhcccCCCCCCCCCCcCccccccc
Confidence            9999999999999877665 899999999999999999999999999999999999999999988788887899999999


Q ss_pred             CHHHHHHHHHHhCCEEEEEeecCCcEEEEEEeeCCCCcccccccccccccccccccCCCCCCCcccc
Q psy14548        326 GLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALSNEANELLPIFNKTSSKFYRATIPTGDWSSTQ  392 (482)
Q Consensus       326 GL~i~r~~~~~~gG~i~v~s~~g~Gt~f~i~lp~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (482)
                      ||+|+|.+++++||++.+.|.+|.||+++++|...+.+..|.+|++++.+|++++...++.+||.|+
T Consensus       347 GLPisrlYa~yf~Gdl~L~SleG~GTD~yI~Lk~ls~~~~e~l~i~~k~~~~~~~~~~~~~dw~~~~  413 (414)
T KOG0787|consen  347 GLPISRLYARYFGGDLKLQSLEGIGTDVYIYLKALSMEAPESLPIYNKSAWRHYETLKEADDWSLPS  413 (414)
T ss_pred             CCcHHHHHHHHhCCCeeEEeeeccccceEEEeccCCccchhhcccccccchhHHhhccccccccCCC
Confidence            9999999999999999999999999999999999999889999999999999999999999999886

>PF10436 BCDHK_Adom3: Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase; InterPro: IPR018955 Catabolism and synthesis of leucine, isoleucine and valine are finely balanced, allowing the body to make the most of dietary input but removing excesses to prevent toxic build-up of their corresponding keto-acids Back     alignment and domain information
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK09303 adaptive-response sensory kinase; Validated Back     alignment and domain information
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional Back     alignment and domain information
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms] Back     alignment and domain information
>PRK11006 phoR phosphate regulon sensor protein; Provisional Back     alignment and domain information
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional Back     alignment and domain information
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional Back     alignment and domain information
>PRK10815 sensor protein PhoQ; Provisional Back     alignment and domain information
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS Back     alignment and domain information
>PRK15347 two component system sensor kinase SsrA; Provisional Back     alignment and domain information
>PRK10604 sensor protein RstB; Provisional Back     alignment and domain information
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL Back     alignment and domain information
>PRK11107 hybrid sensory histidine kinase BarA; Provisional Back     alignment and domain information
>PRK11466 hybrid sensory histidine kinase TorS; Provisional Back     alignment and domain information
>PRK13837 two-component VirA-like sensor kinase; Provisional Back     alignment and domain information
>PRK10755 sensor protein BasS/PmrB; Provisional Back     alignment and domain information
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional Back     alignment and domain information
>PRK10364 sensor protein ZraS; Provisional Back     alignment and domain information
>PRK10490 sensor protein KdpD; Provisional Back     alignment and domain information
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase Back     alignment and domain information
>TIGR01386 cztS_silS_copS heavy metal sensor kinase Back     alignment and domain information
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms] Back     alignment and domain information
>PRK09835 sensor kinase CusS; Provisional Back     alignment and domain information
>PRK10337 sensor protein QseC; Provisional Back     alignment and domain information
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional Back     alignment and domain information
>PRK09467 envZ osmolarity sensor protein; Provisional Back     alignment and domain information
>PRK11100 sensory histidine kinase CreC; Provisional Back     alignment and domain information
>PRK09470 cpxA two-component sensor protein; Provisional Back     alignment and domain information
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms] Back     alignment and domain information
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR Back     alignment and domain information
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase Back     alignment and domain information
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms] Back     alignment and domain information
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional Back     alignment and domain information
>PRK13557 histidine kinase; Provisional Back     alignment and domain information
>PRK11360 sensory histidine kinase AtoS; Provisional Back     alignment and domain information
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins Back     alignment and domain information
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional Back     alignment and domain information
>PRK11086 sensory histidine kinase DcuS; Provisional Back     alignment and domain information
>PRK13560 hypothetical protein; Provisional Back     alignment and domain information
>KOG0787|consensus Back     alignment and domain information
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms] Back     alignment and domain information
>PRK11644 sensory histidine kinase UhpB; Provisional Back     alignment and domain information
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms] Back     alignment and domain information
>PRK10547 chemotaxis protein CheA; Provisional Back     alignment and domain information
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional Back     alignment and domain information
>PRK13559 hypothetical protein; Provisional Back     alignment and domain information
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional Back     alignment and domain information
>PRK04184 DNA topoisomerase VI subunit B; Validated Back     alignment and domain information
>smart00387 HATPase_c Histidine kinase-like ATPases Back     alignment and domain information
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms] Back     alignment and domain information
>TIGR01052 top6b DNA topoisomerase VI, B subunit Back     alignment and domain information
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins Back     alignment and domain information
>PRK14868 DNA topoisomerase VI subunit B; Provisional Back     alignment and domain information
>TIGR01925 spIIAB anti-sigma F factor Back     alignment and domain information
>PRK14867 DNA topoisomerase VI subunit B; Provisional Back     alignment and domain information
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms] Back     alignment and domain information
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK03660 anti-sigma F factor; Provisional Back     alignment and domain information
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair] Back     alignment and domain information
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK04069 serine-protein kinase RsbW; Provisional Back     alignment and domain information
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms] Back     alignment and domain information
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW Back     alignment and domain information
>PF14501 HATPase_c_5: GHKL domain Back     alignment and domain information
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms] Back     alignment and domain information
>TIGR00585 mutl DNA mismatch repair protein MutL Back     alignment and domain information
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms] Back     alignment and domain information
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain Back     alignment and domain information
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>KOG0519|consensus Back     alignment and domain information
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B Back     alignment and domain information
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms] Back     alignment and domain information
>PRK00095 mutL DNA mismatch repair protein; Reviewed Back     alignment and domain information
>PRK05559 DNA topoisomerase IV subunit B; Reviewed Back     alignment and domain information
>TIGR01059 gyrB DNA gyrase, B subunit Back     alignment and domain information
>PRK05644 gyrB DNA gyrase subunit B; Validated Back     alignment and domain information
>PRK05218 heat shock protein 90; Provisional Back     alignment and domain information
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair] Back     alignment and domain information
>smart00433 TOP2c TopoisomeraseII Back     alignment and domain information
>PF00512 HisKA: His Kinase A (phospho-acceptor) domain; InterPro: IPR003661 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions [] Back     alignment and domain information
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14083 HSP90 family protein; Provisional Back     alignment and domain information
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial Back     alignment and domain information
>PTZ00130 heat shock protein 90; Provisional Back     alignment and domain information
>PRK14939 gyrB DNA gyrase subunit B; Provisional Back     alignment and domain information
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional Back     alignment and domain information
>COG5381 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive Back     alignment and domain information
>KOG1979|consensus Back     alignment and domain information
>PLN03237 DNA topoisomerase 2; Provisional Back     alignment and domain information
>PHA02569 39 DNA topoisomerase II large subunit; Provisional Back     alignment and domain information
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair] Back     alignment and domain information
>PTZ00108 DNA topoisomerase 2-like protein; Provisional Back     alignment and domain information
>KOG1977|consensus Back     alignment and domain information
>cd00082 HisKA Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase Back     alignment and domain information
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS Back     alignment and domain information
>smart00388 HisKA His Kinase A (phosphoacceptor) domain Back     alignment and domain information
>KOG1978|consensus Back     alignment and domain information
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins Back     alignment and domain information
>PLN03128 DNA topoisomerase 2; Provisional Back     alignment and domain information
>PTZ00109 DNA gyrase subunit b; Provisional Back     alignment and domain information
>PRK09303 adaptive-response sensory kinase; Validated Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query482
2q8f_A407 Structure Of Pyruvate Dehydrogenase Kinase Isoform 1e-134
2q8f_A407 Structure Of Pyruvate Dehydrogenase Kinase Isoform 1e-18
1y8n_A419 Crystal Structure Of The Pdk3-L2 Complex Length = 4 1e-131
1y8n_A419 Crystal Structure Of The Pdk3-L2 Complex Length = 4 4e-20
2btz_A394 Crystal Structures Of Human Pyruvate Dehydrogenase 1e-127
2btz_A394 Crystal Structures Of Human Pyruvate Dehydrogenase 5e-19
1jm6_A407 Pyruvate Dehydrogenase Kinase, Isozyme 2, Containin 1e-127
1jm6_A407 Pyruvate Dehydrogenase Kinase, Isozyme 2, Containin 5e-19
2zkj_A394 Crystal Structure Of Human Pdk4-Adp Complex Length 1e-125
2zkj_A394 Crystal Structure Of Human Pdk4-Adp Complex Length 5e-20
2e0a_A394 Crystal Structure Of Human Pyruvate Dehydrogenase K 1e-124
2e0a_A394 Crystal Structure Of Human Pyruvate Dehydrogenase K 6e-20
3tz0_A418 Crystal Structure Of Branched-Chain Alpha-Ketoacid 2e-38
3tz0_A418 Crystal Structure Of Branched-Chain Alpha-Ketoacid 2e-05
1gjv_A388 Branched-chain Alpha-ketoacid Dehydrogenase Kinase 3e-38
1gjv_A388 Branched-chain Alpha-ketoacid Dehydrogenase Kinase 2e-05
3vad_A418 Crystal Structure Of I170f Mutant Branched-chain Al 7e-38
3vad_A418 Crystal Structure Of I170f Mutant Branched-chain Al 2e-05
3sl2_A177 Atp Forms A Stable Complex With The Essential Histi 6e-04
>pdb|2Q8F|A Chain A, Structure Of Pyruvate Dehydrogenase Kinase Isoform 1 Length = 407 Back     alignment and structure 
Iteration: 1

 Score =  476 bits (1224), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 223/392 (56%), Positives = 289/392 (73%), Gaps = 7/392 (1%)
Query: 11  VSKMLDFYSQFNPSPLSIKQFIDFG-LSASEEKSFMFLRKELPVRLANIMKEIHLLPDNL 69
           V   +DFY++F+PSPLS+KQF+DFG ++A E+ SFMFLR+ELPVRLANIMKEI LLPDNL
Sbjct: 13  VPGQVDFYARFSPSPLSMKQFLDFGSVNACEKTSFMFLRQELPVRLANIMKEISLLPDNL 72
Query: 70  LRMPSVGLVNEWYAMSFDEILEFEKADSNSTDTLDKFCKALVKIRNRHSDVVQTMAQGVM 129
           LR PSV LV  WY  S  E+L+F+   +     +  F   +++IRNRH+DV+ TMAQGV+
Sbjct: 73  LRTPSVQLVQSWYIQSLQELLDFKDKSAEDAKAIYDFTDTVIRIRNRHNDVIPTMAQGVI 132
Query: 130 ELKDSHDVDHQTENSIQYFLDRFYMSRISIRMLINQHTLLFGDELTRGDSSLRHIGCIDP 189
           E K+S  VD  T  ++QYFLDRFYMSRISIRML+NQH+LLFG +     S  +HIG I+P
Sbjct: 133 EYKESFGVDPVTSQNVQYFLDRFYMSRISIRMLLNQHSLLFGGKGKGSPSHRKHIGSINP 192
Query: 190 QCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLYHMLFELF 249
            C+++ V+KD YENAR LC+ YY++SPEL++ E N    G+P++++YVPSHLYHM+FELF
Sbjct: 193 NCNVLEVIKDGYENARRLCDLYYINSPELELEELNAKSPGQPIQVVYVPSHLYHMVFELF 252
Query: 250 KNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQ 309
           KN+MRAT+EHH +  V PPI+V V  G ED+ VKMSD+GGG+P    D LF+YMYSTAP+
Sbjct: 253 KNAMRATMEHHANRGVYPPIQVHVTLGNEDLTVKMSDRGGGVPLRKIDRLFNYMYSTAPR 312
Query: 310 PSKSDAHTVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALSNEANELLP 369
           P    +  VPLAG+GYGLPISRLYA+YF GD+ L S +G GTDA+IY+KALS ++ E LP
Sbjct: 313 PRVETSRAVPLAGFGYGLPISRLYAQYFQGDLKLYSLEGYGTDAVIYIKALSTDSIERLP 372
Query: 370 IFNKTSSKFYRATIPTGDWSSTQSACMEHRHP 401
           ++NK + K Y       DW      C+  R P
Sbjct: 373 VYNKAAWKHYNTNHEADDW------CVPSREP 398
>pdb|2Q8F|A Chain A, Structure Of Pyruvate Dehydrogenase Kinase Isoform 1 Length = 407 Back     alignment and structure
>pdb|1Y8N|A Chain A, Crystal Structure Of The Pdk3-L2 Complex Length = 419 Back     alignment and structure
>pdb|1Y8N|A Chain A, Crystal Structure Of The Pdk3-L2 Complex Length = 419 Back     alignment and structure
>pdb|2BTZ|A Chain A, Crystal Structures Of Human Pyruvate Dehydrogenase Kinase 2 Containing Physiological And Synthetic Ligands Length = 394 Back     alignment and structure
>pdb|2BTZ|A Chain A, Crystal Structures Of Human Pyruvate Dehydrogenase Kinase 2 Containing Physiological And Synthetic Ligands Length = 394 Back     alignment and structure
>pdb|1JM6|A Chain A, Pyruvate Dehydrogenase Kinase, Isozyme 2, Containing Adp Length = 407 Back     alignment and structure
>pdb|1JM6|A Chain A, Pyruvate Dehydrogenase Kinase, Isozyme 2, Containing Adp Length = 407 Back     alignment and structure
>pdb|2ZKJ|A Chain A, Crystal Structure Of Human Pdk4-Adp Complex Length = 394 Back     alignment and structure
>pdb|2ZKJ|A Chain A, Crystal Structure Of Human Pdk4-Adp Complex Length = 394 Back     alignment and structure
>pdb|2E0A|A Chain A, Crystal Structure Of Human Pyruvate Dehydrogenase Kinase 4 In Complex With Amppnp Length = 394 Back     alignment and structure
>pdb|2E0A|A Chain A, Crystal Structure Of Human Pyruvate Dehydrogenase Kinase 4 In Complex With Amppnp Length = 394 Back     alignment and structure
>pdb|3TZ0|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid Dehydrogenase KinaseS-Alpha-Chloroisocaproate Complex Length = 418 Back     alignment and structure
>pdb|3TZ0|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid Dehydrogenase KinaseS-Alpha-Chloroisocaproate Complex Length = 418 Back     alignment and structure
>pdb|1GJV|A Chain A, Branched-chain Alpha-ketoacid Dehydrogenase Kinase (bck) Complxed With Atp-gamma-s Length = 388 Back     alignment and structure
>pdb|1GJV|A Chain A, Branched-chain Alpha-ketoacid Dehydrogenase Kinase (bck) Complxed With Atp-gamma-s Length = 388 Back     alignment and structure
>pdb|3VAD|A Chain A, Crystal Structure Of I170f Mutant Branched-chain Alpha-ketoacid Dehydrogenase Kinase In Complex With 3,6-dichlorobenzo[b]thiophene-2- Carboxylic Acid Length = 418 Back     alignment and structure
>pdb|3VAD|A Chain A, Crystal Structure Of I170f Mutant Branched-chain Alpha-ketoacid Dehydrogenase Kinase In Complex With 3,6-dichlorobenzo[b]thiophene-2- Carboxylic Acid Length = 418 Back     alignment and structure
>pdb|3SL2|A Chain A, Atp Forms A Stable Complex With The Essential Histidine Kinase Walk (yycg) Domain Length = 177 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query482
2q8g_A407 [pyruvate dehydrogenase [lipoamide]] kinase isozy; 1e-139
2q8g_A407 [pyruvate dehydrogenase [lipoamide]] kinase isozy; 2e-16
2e0a_A394 Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP 1e-137
2e0a_A394 Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP 3e-19
2btz_A394 Pyruvate dehydrogenase kinase isoenzyme 2; GHKL mo 1e-136
2btz_A394 Pyruvate dehydrogenase kinase isoenzyme 2; GHKL mo 6e-16
1y8o_A419 [pyruvate dehydrogenase [lipoamide]] kinase isozy; 1e-134
1y8o_A419 [pyruvate dehydrogenase [lipoamide]] kinase isozy; 5e-18
1gkz_A388 [3-methyl-2-oxobutanoate dehydrogenase [lipoamide] 1e-114
1gkz_A388 [3-methyl-2-oxobutanoate dehydrogenase [lipoamide] 1e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
2q2e_B 621 Type 2 DNA topoisomerase 6 subunit B; DNA-binding, 6e-09
1mu5_A 471 Type II DNA topoisomerase VI subunit B; GHKL ATPas 1e-05
2zbk_B 530 Type 2 DNA topoisomerase 6 subunit B; DNA binding 3e-05
3a0y_A152 Sensor protein; ATP-LID, kinase, phosphoprotein, t 8e-05
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A Length = 407 Back     alignment and structure
 Score =  404 bits (1039), Expect = e-139
 Identities = 220/383 (57%), Positives = 285/383 (74%), Gaps = 1/383 (0%)

Query: 9   ASVSKMLDFYSQFNPSPLSIKQFIDFG-LSASEEKSFMFLRKELPVRLANIMKEIHLLPD 67
             V   +DFY++F+PSPLS+KQF+DFG ++A E+ SFMFLR+ELPVRLANIMKEI LLPD
Sbjct: 11  RGVPGQVDFYARFSPSPLSMKQFLDFGSVNACEKTSFMFLRQELPVRLANIMKEISLLPD 70

Query: 68  NLLRMPSVGLVNEWYAMSFDEILEFEKADSNSTDTLDKFCKALVKIRNRHSDVVQTMAQG 127
           NLLR PSV LV  WY  S  E+L+F+   +     +  F   +++IRNRH+DV+ TMAQG
Sbjct: 71  NLLRTPSVQLVQSWYIQSLQELLDFKDKSAEDAKAIYDFTDTVIRIRNRHNDVIPTMAQG 130

Query: 128 VMELKDSHDVDHQTENSIQYFLDRFYMSRISIRMLINQHTLLFGDELTRGDSSLRHIGCI 187
           V+E K+S  VD  T  ++QYFLDRFYMSRISIRML+NQH+LLFG +     S  +HIG I
Sbjct: 131 VIEYKESFGVDPVTSQNVQYFLDRFYMSRISIRMLLNQHSLLFGGKGKGSPSHRKHIGSI 190

Query: 188 DPQCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLYHMLFE 247
           +P C+++ V+KD YENAR LC+ YY++SPEL++ E N    G+P++++YVPSHLYHM+FE
Sbjct: 191 NPNCNVLEVIKDGYENARRLCDLYYINSPELELEELNAKSPGQPIQVVYVPSHLYHMVFE 250

Query: 248 LFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTA 307
           LFKN+MRAT+EHH +  V PPI+V V  G ED+ VKMSD+GGG+P    D LF+YMYSTA
Sbjct: 251 LFKNAMRATMEHHANRGVYPPIQVHVTLGNEDLTVKMSDRGGGVPLRKIDRLFNYMYSTA 310

Query: 308 PQPSKSDAHTVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALSNEANEL 367
           P+P    +  VPLAG+GYGLPISRLYA+YF GD+ L S +G GTDA+IY+KALS ++ E 
Sbjct: 311 PRPRVETSRAVPLAGFGYGLPISRLYAQYFQGDLKLYSLEGYGTDAVIYIKALSTDSIER 370

Query: 368 LPIFNKTSSKFYRATIPTGDWSS 390
           LP++NK + K Y       DW  
Sbjct: 371 LPVYNKAAWKHYNTNHEADDWCV 393
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A Length = 407 Back     alignment and structure
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A* Length = 394 Back     alignment and structure
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A* Length = 394 Back     alignment and structure
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A* Length = 394 Back     alignment and structure
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A* Length = 394 Back     alignment and structure
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A* Length = 419 Back     alignment and structure
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A* Length = 419 Back     alignment and structure
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A* Length = 388 Back     alignment and structure
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A* Length = 388 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei} Length = 621 Back     alignment and structure
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A* Length = 471 Back     alignment and structure
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae} Length = 530 Back     alignment and structure
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A Length = 152 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query482
2e0a_A394 Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP 100.0
2q8g_A407 [pyruvate dehydrogenase [lipoamide]] kinase isozy; 100.0
1y8o_A419 [pyruvate dehydrogenase [lipoamide]] kinase isozy; 100.0
2btz_A394 Pyruvate dehydrogenase kinase isoenzyme 2; GHKL mo 100.0
1gkz_A388 [3-methyl-2-oxobutanoate dehydrogenase [lipoamide] 100.0
2c2a_A258 Sensor histidine kinase; phosphotransfer, PHOQ, se 99.97
4ew8_A268 Sensor protein DIVL; signal transduction, two-comp 99.95
3jz3_A222 Sensor protein QSEC; helix-turn-helix, kinase doma 99.95
3d36_A244 Sporulation kinase B; GHKL ATPase, four helix bund 99.95
3a0r_A349 Sensor protein; four helix bundle, PAS fold, kinas 99.94
4fpp_A247 Phosphotransferase; four helix bundle, bergerat fo 99.92
1ysr_A150 Sensor-type histidine kinase PRRB; ATP-binding dom 99.91
1id0_A152 PHOQ histidine kinase; PHOQ/PHOP, signal transduct 99.91
1bxd_A161 ENVZ(290-450), protein (osmolarity sensor protein 99.9
3a0y_A152 Sensor protein; ATP-LID, kinase, phosphoprotein, t 99.9
3sl2_A177 Sensor histidine kinase YYCG; ATP binding, intact 99.88
1r62_A160 Nitrogen regulation protein NR(II); PII, histidine 99.87
1b3q_A379 Protein (chemotaxis protein CHEA); histine kinase, 99.87
1i58_A189 Chemotaxis protein CHEA; beta-alpha sandwich, sign 99.86
3ehh_A218 Sensor kinase (YOCF protein); four-helix bundle, G 99.84
3ehg_A128 Sensor kinase (YOCF protein); GHL ATPase domain, t 99.77
3zxo_A129 Redox sensor histidine kinase response regulator; 99.72
3zxq_A124 Hypoxia sensor histidine kinase response regulato; 99.7
1mu5_A 471 Type II DNA topoisomerase VI subunit B; GHKL ATPas 99.69
1th8_A145 Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-s 99.68
2zbk_B 530 Type 2 DNA topoisomerase 6 subunit B; DNA binding 99.67
2q2e_B 621 Type 2 DNA topoisomerase 6 subunit B; DNA-binding, 99.5
3na3_A348 DNA mismatch repair protein MLH1; MUTL protein hom 98.75
1h7s_A365 PMS1 protein homolog 2; DNA repair, GHL ATPase, mi 98.7
1b63_A333 MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A 98.68
1kij_A 390 DNA gyrase subunit B; topoisomerase, gyrase B-coum 98.59
2btz_A394 Pyruvate dehydrogenase kinase isoenzyme 2; GHKL mo 98.55
2q8g_A407 [pyruvate dehydrogenase [lipoamide]] kinase isozy; 98.53
3h4l_A 367 DNA mismatch repair protein PMS1; ATP binding, DNA 98.53
2e0a_A394 Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP 98.5
1y8o_A419 [pyruvate dehydrogenase [lipoamide]] kinase isozy; 98.48
3ke6_A399 Protein RV1364C/MT1410; anti-sigma factor, anti-si 98.38
2wer_A220 ATP-dependent molecular chaperone HSP82; ATPase, A 98.22
1ixm_A192 SPO0B, protein (sporulation response regulatory pr 98.16
1qy5_A269 Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: N 98.08
1yc1_A264 HSP 86, heat shock protein HSP 90-alpha; cell-cycl 98.0
1s16_A 390 Topoisomerase IV subunit B; two-domain protein com 97.96
2ior_A235 Chaperone protein HTPG; heat shock protein, HSP90; 97.88
1ei1_A 391 DNA gyrase B, GYRB; ATPase domain, dimer, isomeras 97.83
2gqp_A236 Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, 97.72
3t0h_A228 Heat shock protein HSP 90-alpha; chaperone, ATPase 97.68
4duh_A220 DNA gyrase subunit B; structure-based drug design, 97.65
3o0i_A256 HSP90AA1 protein; HSP90 heat-shock proteins, chape 97.62
4emv_A226 DNA topoisomerase IV, B subunit; protein-inhibitor 97.54
1gkz_A388 [3-methyl-2-oxobutanoate dehydrogenase [lipoamide] 97.52
3fv5_A201 DNA topoisomerase 4 subunit B; topoisomerase IV B 97.51
3peh_A281 Endoplasmin homolog; structural genomics, structur 97.47
1zxm_A 400 TOPO IIA ATPase, DNA topoisomerase II, alpha isozy 97.44
1y4s_A 559 Chaperone protein HTPG; HSP90, molecular chaperone 97.41
3nmq_A239 Heat shock protein HSP 90-beta; ATPase, chaperone- 97.37
2cg9_A 677 ATP-dependent molecular chaperone HSP82; chaperone 97.34
3cwv_A 369 DNA gyrase, B subunit, truncated; structural genom 97.16
2o1u_A 666 Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, 97.15
3lnu_A 408 Topoisomerase IV subunit B; PARE, ATP-binding, nuc 97.03
2ioq_A 624 Chaperone protein HTPG; heat shock protein, HSP90; 96.98
1pvg_A 418 DNA topoisomerase II; GHKL ATPase domain; HET: DNA 96.96
3ttz_A198 DNA gyrase subunit B; protein-inhibitor complex, A 96.8
3ied_A272 Heat shock protein; HSP90, chaperone, structural g 96.78
4gfh_A 1177 DNA topoisomerase 2; topoisomerase, protein-DNA co 94.67
3zcc_A114 HAMP, osmolarity sensor protein ENVZ; signaling pr 92.75
3mm4_A206 Histidine kinase homolog; receiver domain, CKI1, c 91.62
1bxd_A161 ENVZ(290-450), protein (osmolarity sensor protein 86.87
1id0_A152 PHOQ histidine kinase; PHOQ/PHOP, signal transduct 86.69
2c2a_A258 Sensor histidine kinase; phosphotransfer, PHOQ, se 86.14
1i58_A189 Chemotaxis protein CHEA; beta-alpha sandwich, sign 85.76
1ysr_A150 Sensor-type histidine kinase PRRB; ATP-binding dom 85.33
3jz3_A222 Sensor protein QSEC; helix-turn-helix, kinase doma 84.13
3sl2_A177 Sensor histidine kinase YYCG; ATP binding, intact 82.37
3d36_A244 Sporulation kinase B; GHKL ATPase, four helix bund 80.8
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A* Back     alignment and structure
Probab=100.00  E-value=5.2e-57  Score=465.68  Aligned_cols=382  Identities=53%  Similarity=0.921  Sum_probs=308.3

Q ss_pred             HHHHHHHhhcCCCCcccHHHHHhcC-CCcChhhHHHHHHHHHHHHHHHHHHHHhcCChhhhcCChHHHHHHHHHHHHHHH
Q psy14548         11 VSKMLDFYSQFNPSPLSIKQFIDFG-LSASEEKSFMFLRKELPVRLANIMKEIHLLPDNLLRMPSVGLVNEWYAMSFDEI   89 (482)
Q Consensus        11 ~~~~~~~y~~~~~~~~sl~~l~~~g-~~~~~~~s~~~l~~eLp~Rla~ri~~l~~lp~~l~~~~~i~~v~~~y~~sf~~l   89 (482)
                      +.+.|++||+++++|+||+||++|| .+.++.+|++|+++|||+|||+++++++.||+.+..++.+.+++++|.++|++|
T Consensus         3 ~~~~~~~~~~~~~~~~sl~~l~~fg~~~~~~~~s~~~l~~el~~rla~~~~~l~~l~~~l~~~~~~~ev~~~l~~s~~~l   82 (394)
T 2e0a_A            3 VPREVEHFSRYSPSPLSMKQLLDFGSENACERTSFAFLRQELPVRLANILKEIDILPTQLVNTSSVQLVKSWYIQSLMDL   82 (394)
T ss_dssp             CCHHHHHHTTSCCCCCBHHHHHHTTC---CHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHcCCCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccHhhhcCchHHHHHHHHHHHHHHH
Confidence            4678999999999999999999999 678888999999999999999999999999999999999999999999999999


Q ss_pred             HcccccCCCCchhHHHHHHHHHHHHHhhchhH-HHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhhHHHHHHHHHH
Q psy14548         90 LEFEKADSNSTDTLDKFCKALVKIRNRHSDVV-QTMAQGVMELKDSHDVDHQTENSIQYFLDRFYMSRISIRMLINQHTL  168 (482)
Q Consensus        90 ~~~~~~~~~~~~~~~~f~~~l~~~l~~~~~~i-~~la~g~~e~~~~~~~~~~~~e~~~~~Ld~i~~sri~~r~Li~~~l~  168 (482)
                      ....+...+..++.+.|+..+ |++++|++.+ .+++.|+.++.+....+....+++++|++++...+++.|++++++|.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~-HeLrtpl~~vPlt~i~g~~el~~~~~~~~~~~~~~~~~l~~~~i~~~~~rlli~~lL~  161 (394)
T 2e0a_A           83 VEFHEKSPDDQKALSDFVDTL-IKVRNRHHNVVPTMAQGIIEYKDACTVDPVTNQNLQYFLDRFYMNRISTRMLMNQHIL  161 (394)
T ss_dssp             HTTSSSCTTCHHHHHHHHHHH-HHHHHHHTTHHHHHHHHHHHHHTTSCCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccccCccchHHHHHHHHHH-HHHHhhhhhhHHHHHHHHHHHHhhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            998876655555555676655 9999976665 77778888877654444556788999999877778888999999999


Q ss_pred             hhccccccCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeccCCCCCeEEEechhHHHHHHHHH
Q psy14548        169 LFGDELTRGDSSLRHIGCIDPQCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLYHMLFEL  248 (482)
Q Consensus       169 L~~~~~~~~~~~~~~ig~i~~~~~l~~li~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~L~~il~NL  248 (482)
                      ++....   ......+|.+++.+++.++++++++.++..|...|+..+++.+.+.....+..+..+.+|+.+|.+|+.||
T Consensus       162 l~~~~~---~~~~~~~g~i~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~v~~d~~~L~~il~NL  238 (394)
T 2e0a_A          162 IFSDSQ---TGNPSHIGSIDPNCDVVAVVQDAFECSRMLCDQYYLSSPELKLTQVNGKFPDQPIHIVYVPSHLHHMLFEL  238 (394)
T ss_dssp             HHCSSC---CCCTTSBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEESSSTTSCCEEEECHHHHHHHHHHH
T ss_pred             Hhhccc---CCCCCccccccCCCCHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeccCCCCCCeEEEEcHHHHHHHHHHH
Confidence            765431   23345677888899999999999999999999999999988888743112345678999999999999999


Q ss_pred             HHHHHHHhhhcCCCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCCCCCCCCcccCHH
Q psy14548        249 FKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVPLAGYGYGLP  328 (482)
Q Consensus       249 l~NAik~t~~~~~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~~~~~~G~GLGL~  328 (482)
                      |+||+||+.+++......|+|.|.+...++.+.|+|+|+|+|||++.+++||++||+++..+..+.+..+..+|+||||+
T Consensus       239 l~NAik~~~~~~~~~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~if~~f~~~~~~~~~~~~~~~~~~G~GLGL~  318 (394)
T 2e0a_A          239 FKNAMRATVEHQENQPSLTPIEVIVVLGKEDLTIKISDRGGGVPLRIIDRLFSYTYSTAPTPVMDNSRNAPLAGFGYGLP  318 (394)
T ss_dssp             HHHHHHHHHHHTTTSSSCCCEEEEEEECSSEEEEEEEECSCCCCGGGHHHHTSTTCCSSCCC------CCCSSCSSCHHH
T ss_pred             HHHHHHHHHhcccccCCCCCEEEEEEeCCCEEEEEEEeCCCCcCHHHHHHHhCcCccCCCCCCcCcCCCCCCCCcccCHH
Confidence            99999999987643334567999999999999999999999999999999999999976432112223445679999999


Q ss_pred             HHHHHHHHhCCEEEEEeecCCcEEEEEEeeCCCCcccccccccccccccccccCCCCCCCcccccccc
Q psy14548        329 ISRLYARYFHGDIMLLSCDGLGTDAIIYLKALSNEANELLPIFNKTSSKFYRATIPTGDWSSTQSACM  396 (482)
Q Consensus       329 i~r~~~~~~gG~i~v~s~~g~Gt~f~i~lp~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (482)
                      |||.++++|||+|.+.|.+|+||+|+|+||....+..+++|+++++++++|+....+++|+.|+++..
T Consensus       319 i~~~i~~~~gG~i~v~s~~g~Gt~f~i~lP~~~~~~~e~lp~~~~~~~~~~~~~~~~~d~~~~~~~~~  386 (394)
T 2e0a_A          319 ISRLYAKYFQGDLNLYSLSGYGTDAIIYLKALSSESIEKLPVFNKSAFKHYQMSSEADDWCIPSREPK  386 (394)
T ss_dssp             HHHHHHHHTTCEEEEEEETTTEEEEEEEEESSGGGCBCCCCCCSHHHHHHC-----------------
T ss_pred             HHHHHHHHhCCEEEEEecCCccEEEEEEeCCCCCCccCCCCCcCchHHHHhccCCCCCCCcCCCCCCc
Confidence            99999999999999999999999999999999878889999999999999999999999999987764
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A Back     alignment and structure
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A* Back     alignment and structure
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A* Back     alignment and structure
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A* Back     alignment and structure
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A* Back     alignment and structure
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus} Back     alignment and structure
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli} Back     alignment and structure
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus} Back     alignment and structure
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima} Back     alignment and structure
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A Back     alignment and structure
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A Back     alignment and structure
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A Back     alignment and structure
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3 Back     alignment and structure
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A Back     alignment and structure
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis} Back     alignment and structure
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3 Back     alignment and structure
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A Back     alignment and structure
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A* Back     alignment and structure
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A* Back     alignment and structure
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis} Back     alignment and structure
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis} Back     alignment and structure
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis} Back     alignment and structure
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A* Back     alignment and structure
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A* Back     alignment and structure
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae} Back     alignment and structure
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei} Back     alignment and structure
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens} Back     alignment and structure
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A* Back     alignment and structure
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A* Back     alignment and structure
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2 Back     alignment and structure
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A* Back     alignment and structure
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A Back     alignment and structure
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae} Back     alignment and structure
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A* Back     alignment and structure
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A* Back     alignment and structure
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis} Back     alignment and structure
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A Back     alignment and structure
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A Back     alignment and structure
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A* Back     alignment and structure
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A* Back     alignment and structure
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 Back     alignment and structure
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli} Back     alignment and structure
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 Back     alignment and structure
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A* Back     alignment and structure
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ... Back     alignment and structure
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A* Back     alignment and structure
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A* Back     alignment and structure
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A* Back     alignment and structure
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A* Back     alignment and structure
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A* Back     alignment and structure
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A* Back     alignment and structure
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A* Back     alignment and structure
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A Back     alignment and structure
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1 Back     alignment and structure
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae} Back     alignment and structure
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus} Back     alignment and structure
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A Back     alignment and structure
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A* Back     alignment and structure
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A Back     alignment and structure
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A* Back     alignment and structure
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A* Back     alignment and structure
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum} Back     alignment and structure
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae} Back     alignment and structure
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A Back     alignment and structure
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A Back     alignment and structure
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3 Back     alignment and structure
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A Back     alignment and structure
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A* Back     alignment and structure
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A* Back     alignment and structure
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A Back     alignment and structure
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli} Back     alignment and structure
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis} Back     alignment and structure
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 482
d1y8oa1164 a.29.5.1 (A:13-176) Pyruvate dehydrogenase kinase 4e-70
d1jm6a1167 a.29.5.1 (A:1003-1169) Pyruvate dehydrogenase kina 2e-69
d1gkza1148 a.29.5.1 (A:38-185) Branched-chain alpha-ketoacid 4e-55
d1jm6a2190 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kin 1e-54
d1jm6a2190 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kin 2e-10
d1gkza2193 d.122.1.4 (A:186-378) Branched-chain alpha-ketoaci 2e-32
d1gkza2193 d.122.1.4 (A:186-378) Branched-chain alpha-ketoaci 2e-06
d1y8oa2125 d.122.1.4 (A:177-301) Pyruvate dehydrogenase kinas 3e-22
d2c2aa2161 d.122.1.3 (A:321-481) Sensor histidine kinase TM08 5e-11
d1ysra1148 d.122.1.3 (A:299-446) Sensor-type histidine kinase 3e-09
d1bxda_161 d.122.1.3 (A:) Histidine kinase domain of the osmo 7e-09
d1id0a_146 d.122.1.3 (A:) Histidine kinase PhoQ domain {Esche 9e-08
d1r62a_156 d.122.1.3 (A:) Nitrogen regulation protein NtrB, C 0.001
>d1y8oa1 a.29.5.1 (A:13-176) Pyruvate dehydrogenase kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 164 Back     information, alignment and structure

class: All alpha proteins
fold: Bromodomain-like
superfamily: alpha-ketoacid dehydrogenase kinase, N-terminal domain
family: alpha-ketoacid dehydrogenase kinase, N-terminal domain
domain: Pyruvate dehydrogenase kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  218 bits (557), Expect = 4e-70
 Identities = 100/162 (61%), Positives = 121/162 (74%), Gaps = 1/162 (0%)

Query: 13  KMLDFYSQFNPSPLSIKQFIDFGLS-ASEEKSFMFLRKELPVRLANIMKEIHLLPDNLLR 71
           K ++ YS+F+PSPLSIKQF+DFG   A E+ S+MFLRKELPVRLAN M+E++LLPDNLL 
Sbjct: 2   KQIERYSRFSPSPLSIKQFLDFGRDNACEKTSYMFLRKELPVRLANTMREVNLLPDNLLN 61

Query: 72  MPSVGLVNEWYAMSFDEILEFEKADSNSTDTLDKFCKALVKIRNRHSDVVQTMAQGVMEL 131
            PSVGLV  WY  SF E+LE+E         LD F + L+K+RNRH+DVV TMAQGV+E 
Sbjct: 62  RPSVGLVQSWYMQSFLELLEYENKSPEDPQVLDNFLQVLIKVRNRHNDVVPTMAQGVIEY 121

Query: 132 KDSHDVDHQTENSIQYFLDRFYMSRISIRMLINQHTLLFGDE 173
           K+    D     +IQYFLDRFY +RIS RMLINQHTLLFG +
Sbjct: 122 KEKFGFDPFISTNIQYFLDRFYTNRISFRMLINQHTLLFGGD 163
>d1jm6a1 a.29.5.1 (A:1003-1169) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]} Length = 167 Back     information, alignment and structure
>d1gkza1 a.29.5.1 (A:38-185) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 148 Back     information, alignment and structure
>d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]} Length = 190 Back     information, alignment and structure
>d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]} Length = 190 Back     information, alignment and structure
>d1gkza2 d.122.1.4 (A:186-378) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 193 Back     information, alignment and structure
>d1gkza2 d.122.1.4 (A:186-378) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 193 Back     information, alignment and structure
>d1y8oa2 d.122.1.4 (A:177-301) Pyruvate dehydrogenase kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 125 Back     information, alignment and structure
>d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} Length = 161 Back     information, alignment and structure
>d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB {Mycobacterium tuberculosis [TaxId: 1773]} Length = 148 Back     information, alignment and structure
>d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor EnvZ {Escherichia coli [TaxId: 562]} Length = 161 Back     information, alignment and structure
>d1id0a_ d.122.1.3 (A:) Histidine kinase PhoQ domain {Escherichia coli [TaxId: 562]} Length = 146 Back     information, alignment and structure
>d1r62a_ d.122.1.3 (A:) Nitrogen regulation protein NtrB, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 156 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query482
d1jm6a1167 Pyruvate dehydrogenase kinase {Rat (Rattus norvegi 100.0
d1y8oa1164 Pyruvate dehydrogenase kinase {Human (Homo sapiens 100.0
d1jm6a2190 Pyruvate dehydrogenase kinase {Rat (Rattus norvegi 100.0
d1gkza2193 Branched-chain alpha-ketoacid dehydrogenase kinase 100.0
d1gkza1148 Branched-chain alpha-ketoacid dehydrogenase kinase 100.0
d2c2aa2161 Sensor histidine kinase TM0853 {Thermotoga maritim 99.97
d1ysra1148 Sensor-type histidine kinase PrrB {Mycobacterium t 99.97
d1id0a_146 Histidine kinase PhoQ domain {Escherichia coli [Ta 99.96
d1bxda_161 Histidine kinase domain of the osmosensor EnvZ {Es 99.95
d1r62a_156 Nitrogen regulation protein NtrB, C-terminal domai 99.93
d1y8oa2125 Pyruvate dehydrogenase kinase {Human (Homo sapiens 99.8
d2hkja3219 Topoisomerase VI-B subunit {Archaeon Sulfolobus sh 99.65
d1ixma_179 Sporulation response regulatory protein Spo0B {Bac 99.54
d1th8a_139 Anti-sigma factor spoIIab {Bacillus stearothermoph 99.49
d1i58a_189 Histidine kinase CheA {Thermotoga maritima [TaxId: 99.46
d1h7sa2203 DNA mismatch repair protein PMS2 {Human (Homo sapi 98.12
d1jm6a2190 Pyruvate dehydrogenase kinase {Rat (Rattus norvegi 98.1
d1gkza2193 Branched-chain alpha-ketoacid dehydrogenase kinase 98.04
d1b63a2218 DNA mismatch repair protein MutL {Escherichia coli 97.93
d2c2aa189 Sensor histidine kinase TM0853 {Thermotoga maritim 97.08
d1pvga2239 DNA topoisomerase II {Baker's yeast (Saccharomyces 96.84
d1kija2212 DNA gyrase B {Thermus thermophilus [TaxId: 274]} 96.8
d1ei1a2219 DNA gyrase B {Escherichia coli [TaxId: 562]} 96.7
d1uyla_208 HSP90 {Human (Homo sapiens) [TaxId: 9606]} 96.24
d2gqpa1227 HSP90 {Dog (Canis familiaris) [TaxId: 9615]} 96.09
d2iwxa1213 HSP90 {Baker's yeast (Saccharomyces cerevisiae) [T 96.05
d1joya_67 EnvZ histidine kinase {Escherichia coli [TaxId: 56 96.05
d1s14a_168 Topoisomerase IV subunit B {Escherichia coli [TaxI 96.05
d1i58a_189 Histidine kinase CheA {Thermotoga maritima [TaxId: 92.15
d2c2aa2161 Sensor histidine kinase TM0853 {Thermotoga maritim 90.76
d1ysra1148 Sensor-type histidine kinase PrrB {Mycobacterium t 90.54
d1id0a_146 Histidine kinase PhoQ domain {Escherichia coli [Ta 89.81
d1r62a_156 Nitrogen regulation protein NtrB, C-terminal domai 87.06
>d1jm6a1 a.29.5.1 (A:1003-1169) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]} Back     information, alignment and structure
class: All alpha proteins
fold: Bromodomain-like
superfamily: alpha-ketoacid dehydrogenase kinase, N-terminal domain
family: alpha-ketoacid dehydrogenase kinase, N-terminal domain
domain: Pyruvate dehydrogenase kinase
species: Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]

Probab=100.00  E-value=1.5e-39  Score=287.77  Aligned_cols=162  Identities=62%  Similarity=0.987  Sum_probs=147.1

Q ss_pred             HHHHHHHHHhhcCCCCcccHHHHHhcCC-CcChhhHHHHHHHHHHHHHHHHHHHHhcCChhhhcCChHHHHHHHHHHHHH
Q psy14548          9 ASVSKMLDFYSQFNPSPLSIKQFIDFGL-SASEEKSFMFLRKELPVRLANIMKEIHLLPDNLLRMPSVGLVNEWYAMSFD   87 (482)
Q Consensus         9 ~~~~~~~~~y~~~~~~~~sl~~l~~~g~-~~~~~~s~~~l~~eLp~Rla~ri~~l~~lp~~l~~~~~i~~v~~~y~~sf~   87 (482)
                      .+++++|++||+++|+||||+||++||+ +....+|++||++|||||||||+++|+.||+++..||+|+.|++||+++|+
T Consensus         4 ~~~~~~I~~ya~~~~tplSL~ql~~FG~~~~~~~~S~~fl~~ELPiRLAhRi~el~~LP~~l~~~p~I~~V~~~Y~~SF~   83 (167)
T d1jm6a1           4 AGAPKYIEHFSKFSPSPLSMKQFLDFGSSNACEKTSFTFLRQELPVRLANIMKEINLLPDRVLSTPSVQLVQSWYVQSLL   83 (167)
T ss_dssp             TSHHHHHHHHTTSCCCCCBHHHHHTTC---CCHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHTSHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHcCCCCCCCHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHCCHHHhcCCcHHHHHHHHHHHHH
Confidence            4689999999999999999999999995 456678999999999999999999999999999999999999999999999


Q ss_pred             HHHcccccCCCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhhHHHHHHHHH
Q psy14548         88 EILEFEKADSNSTDTLDKFCKALVKIRNRHSDVVQTMAQGVMELKDSHDVDHQTENSIQYFLDRFYMSRISIRMLINQHT  167 (482)
Q Consensus        88 ~l~~~~~~~~~~~~~~~~f~~~l~~~l~~~~~~i~~la~g~~e~~~~~~~~~~~~e~~~~~Ld~i~~sri~~r~Li~~~l  167 (482)
                      +|++++++.+++.+.+++|++.+.+++++|.+++.++|+|+.|+++..+.+..+.++++.|||+++++||++|+|++||+
T Consensus        84 ~l~~f~~~~~~~~~~~~~F~~~L~~i~~rH~~vv~tlA~G~~E~k~~~~~~~~~~~~i~~FLdrf~~sRIgiR~L~~QHl  163 (167)
T d1jm6a1          84 DIMEFLDKDPEDHRTLSQFTDALVTIRNRHNDVVPTMAQGVLEYKDTYGDDPVSNQNIQYFLDRFYLSRISIRMLINQHT  163 (167)
T ss_dssp             HHHTTSSSCTTSHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHCC------CCCSCCTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhcccCCCCchHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999887788889999999999999999999999999999999987766666778999999999999999999999999


Q ss_pred             Hhh
Q psy14548        168 LLF  170 (482)
Q Consensus       168 ~L~  170 (482)
                      +|+
T Consensus       164 aL~  166 (167)
T d1jm6a1         164 LIF  166 (167)
T ss_dssp             HHH
T ss_pred             Hhh
Confidence            987
>d1y8oa1 a.29.5.1 (A:13-176) Pyruvate dehydrogenase kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]} Back     information, alignment and structure
>d1gkza2 d.122.1.4 (A:186-378) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1gkza1 a.29.5.1 (A:38-185) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1id0a_ d.122.1.3 (A:) Histidine kinase PhoQ domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor EnvZ {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1r62a_ d.122.1.3 (A:) Nitrogen regulation protein NtrB, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1y8oa2 d.122.1.4 (A:177-301) Pyruvate dehydrogenase kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]} Back     information, alignment and structure
>d1ixma_ d.123.1.1 (A:) Sporulation response regulatory protein Spo0B {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1th8a_ d.122.1.3 (A:) Anti-sigma factor spoIIab {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1i58a_ d.122.1.3 (A:) Histidine kinase CheA {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]} Back     information, alignment and structure
>d1gkza2 d.122.1.4 (A:186-378) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2c2aa1 a.30.2.1 (A:232-320) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1pvga2 d.122.1.2 (A:7-245) DNA topoisomerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1kija2 d.122.1.2 (A:9-220) DNA gyrase B {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ei1a2 d.122.1.2 (A:2-220) DNA gyrase B {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1uyla_ d.122.1.1 (A:) HSP90 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2gqpa1 d.122.1.1 (A:74-337) HSP90 {Dog (Canis familiaris) [TaxId: 9615]} Back     information, alignment and structure
>d2iwxa1 d.122.1.1 (A:2-214) HSP90 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1joya_ a.30.2.1 (A:) EnvZ histidine kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1s14a_ d.122.1.2 (A:) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1i58a_ d.122.1.3 (A:) Histidine kinase CheA {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1id0a_ d.122.1.3 (A:) Histidine kinase PhoQ domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1r62a_ d.122.1.3 (A:) Nitrogen regulation protein NtrB, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure