Psyllid ID: psy14558

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130------

GIPKVSKDRDIRIRAIAAELACNKYDIVCLQEVWKNDDFELIKSVVFEALPYAHYFYSGVMGSGVCILSRYEITEVLFHQWQLNGYIHKIFHADWFGGKGVGLCQVLVNGFRLNVYTTHVSISWVIIPLCPDTESK

ccccccccHHHHHHHHHHHHHcccccEEEEEccccccHHHHHHHHHHHcccEEEEEccccccccEEEEEEEcccEEEEEEEEcccccccccccccccccEEEEEEEEEccEEEEEEEccccccccccccccccccc

ccccHcHcHHHHHHHHHHHHHcccccEEEEEEEccHHHHHHHHHHHHHccccccEccccccccEEEEEEcccEEEEEEEEccccccccEEEccccEcccEEEEEEEEccccEEEEEEEcccccEEEcccccccccc

gipkvskdRDIRIRAIAAELACNKYDIVCLQEVWKNDDFELIKSVVFealpyahyfysgvmgsgvcilsrYEITEVLFHQWQLNGYIHKifhadwfggkgvGLCQVLVNGFRLNVYTTHVSISWviiplcpdtesk

gipkvskdrdiRIRAIAAELACNKYDIVCLQEVWKNDDFELIKSVVFEALPYAHYFYSGVMGSGVCILSRYEITEVLFHQWQLNGYIHKIFHADWFGGKGVGLCQVLVNGFRLNVYTthvsiswviiplcpdtesk

GIPKVSKDRDIRIRAIAAELACNKYDIVCLQEVWKNDDFELIKSVVFEALPYAHYFYSGVMGSGVCILSRYEITEVLFHQWQLNGYIHKIFHADWFGGKGVGLCQVLVNGFRLNVYTTHVSISWVIIPLCPDTESK

**********IRIRAIAAELACNKYDIVCLQEVWKNDDFELIKSVVFEALPYAHYFYSGVMGSGVCILSRYEITEVLFHQWQLNGYIHKIFHADWFGGKGVGLCQVLVNGFRLNVYTTHVSISWVIIPLC******

GIPKVSKDRDIRIRAIAAELACNKYDIVCLQEVWKNDDFELIKSVVFEALPYAHYFYSGVMGSGVCILSRYEITEVLFHQWQLNGYIHKIFHADWFGGKGVGLCQVLVNGFRLNVYTTHVSISWV***********

GIPKVSKDRDIRIRAIAAELACNKYDIVCLQEVWKNDDFELIKSVVFEALPYAHYFYSGVMGSGVCILSRYEITEVLFHQWQLNGYIHKIFHADWFGGKGVGLCQVLVNGFRLNVYTTHVSISWVIIPLCPDTESK

GIPKVSKDRDIRIRAIAAELACNKYDIVCLQEVWKNDDFELIKSVVFEALPYAHYFYSGVMGSGVCILSRYEITEVLFHQWQLNGYIHKIFHADWFGGKGVGLCQVLVNGFRLNVYTTHVSISWVIIPLC******

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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GIPKVSKDRDIRIRAIAAELACNKYDIVCLQEVWKNDDFELIKSVVFEALPYAHYFYSGVMGSGVCILSRYEITEVLFHQWQLNGYIHKIFHADWFGGKGVGLCQVLVNGFRLNVYTTHVSISWVIIPLCPDTESK

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		136	2.2.26 [Sep-21-2011]
Q9VZS6		442	Putative neutral sphingom	yes	N/A	0.911	0.280	0.556	9e-37
Q9ET64		422	Sphingomyelin phosphodies	yes	N/A	0.904	0.291	0.414	7e-25
O60906		423	Sphingomyelin phosphodies	yes	N/A	0.882	0.283	0.416	2e-24
O45870		434	Putative neutral sphingom	yes	N/A	0.897	0.281	0.439	3e-23
O70572		419	Sphingomyelin phosphodies	yes	N/A	0.904	0.293	0.390	6e-23
O74369		424	Inositol phosphosphingoli	yes	N/A	0.882	0.283	0.363	2e-16
P40015		477	Inositol phosphosphingoli	yes	N/A	0.816	0.232	0.313	2e-12

>sp\|Q9VZS6\|NSMA_DROME Putative neutral sphingomyelinase OS=Drosophila melanogaster GN=CG12034 PE=1 SV=2	Back alignment and function desciption

 Score =  151 bits (382), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 69/124 (55%), Positives = 88/124 (70%)

Query: 1   GIPKVSKDRDIRIRAIAAELACNKYDIVCLQEVWKNDDFELIKSVVFEALPYAHYFYSGV 60
           GIP VS DR  RI AI  ELA  KYDIV LQEVW  +D EL++      LP++HYF+SGV
Sbjct: 15  GIPYVSSDRRPRIDAICKELASGKYDIVSLQEVWAQEDSELLQKGTEAVLPHSHYFHSGV 74

Query: 61  MGSGVCILSRYEITEVLFHQWQLNGYIHKIFHADWFGGKGVGLCQVLVNGFRLNVYTTHV 120
           MG+G+ +LS+Y I   LFH W +NGY H+I HADWFGGKGVGLC++LV G  +++Y  H+
Sbjct: 75  MGAGLLVLSKYPILGTLFHAWSVNGYFHRIQHADWFGGKGVGLCRILVGGQMVHLYNAHL 134

Query: 121 SISW 124
              +
Sbjct: 135 HAEY 138

Drosophila melanogaster (taxid: 7227)
EC: 3EC: .EC: 1EC: .EC: 4EC: .EC: 1EC: 2

>sp\|Q9ET64\|NSMA_RAT Sphingomyelin phosphodiesterase 2 OS=Rattus norvegicus GN=Smpd2 PE=1 SV=1	Back alignment and function description

>sp\|O60906\|NSMA_HUMAN Sphingomyelin phosphodiesterase 2 OS=Homo sapiens GN=SMPD2 PE=1 SV=2	Back alignment and function description

>sp\|O45870\|NSMA_CAEEL Putative neutral sphingomyelinase OS=Caenorhabditis elegans GN=T27F6.6 PE=3 SV=2	Back alignment and function description

>sp\|O70572\|NSMA_MOUSE Sphingomyelin phosphodiesterase 2 OS=Mus musculus GN=Smpd2 PE=1 SV=1	Back alignment and function description

>sp\|O74369\|CSS1_SCHPO Inositol phosphosphingolipids phospholipase C OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=css1 PE=1 SV=2	Back alignment and function description

>sp\|P40015\|ISC1_YEAST Inositol phosphosphingolipids phospholipase C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ISC1 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		136
383860811		393	PREDICTED: putative neutral sphingomyeli	0.882	0.305	0.6	2e-40
307180084		360	Putative neutral sphingomyelinase [Campo	0.882	0.333	0.633	3e-40
322797021		388	hypothetical protein SINV_07629 [Solenop	0.882	0.309	0.633	3e-40
340715261		371	PREDICTED: putative neutral sphingomyeli	0.882	0.323	0.583	2e-39
350414569		371	PREDICTED: putative neutral sphingomyeli	0.882	0.323	0.583	2e-39
189236489		393	PREDICTED: similar to neutral Sphingomye	0.911	0.315	0.580	3e-39
380020011		393	PREDICTED: putative neutral sphingomyeli	0.882	0.305	0.575	3e-38
328785734		393	PREDICTED: putative neutral sphingomyeli	0.882	0.305	0.575	6e-38
156551960		404	PREDICTED: putative neutral sphingomyeli	0.882	0.297	0.6	6e-38
332022825		391	Putative neutral sphingomyelinase [Acrom	0.911	0.317	0.572	8e-38

>gi\|383860811\|ref\|XP_003705882.1\| PREDICTED: putative neutral sphingomyelinase-like [Megachile rotundata]	Back alignment and taxonomy information

 Score =  169 bits (429), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 72/120 (60%), Positives = 92/120 (76%)

Query: 1   GIPKVSKDRDIRIRAIAAELACNKYDIVCLQEVWKNDDFELIKSVVFEALPYAHYFYSGV 60
           GIP VSK+R  R+ AIA + A   YD++CLQEVW  DDF+++K+   E LPY+HYFYSGV
Sbjct: 16  GIPYVSKNRSARMTAIAEKFATENYDVICLQEVWSIDDFKMMKAKTQEQLPYSHYFYSGV 75

Query: 61  MGSGVCILSRYEITEVLFHQWQLNGYIHKIFHADWFGGKGVGLCQVLVNGFRLNVYTTHV 120
            GSG+CILSRY I +V+FH+W LNGY+HKI H DWFGGKGVGLC++ +N   +N Y  H+
Sbjct: 76  AGSGICILSRYPIQDVMFHKWPLNGYVHKIHHGDWFGGKGVGLCKLKINNLNINFYIAHL 135

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi\|307180084\|gb\|EFN68152.1\| Putative neutral sphingomyelinase [Camponotus floridanus]	Back alignment and taxonomy information

>gi\|322797021\|gb\|EFZ19335.1\| hypothetical protein SINV_07629 [Solenopsis invicta]	Back alignment and taxonomy information

>gi\|340715261\|ref\|XP_003396135.1\| PREDICTED: putative neutral sphingomyelinase-like [Bombus terrestris]	Back alignment and taxonomy information

>gi\|350414569\|ref\|XP_003490356.1\| PREDICTED: putative neutral sphingomyelinase-like [Bombus impatiens]	Back alignment and taxonomy information

>gi\|189236489\|ref\|XP_975064.2\| PREDICTED: similar to neutral Sphingomyelinase, putative [Tribolium castaneum] gi\|270005347\|gb\|EFA01795.1\| hypothetical protein TcasGA2_TC007396 [Tribolium castaneum]	Back alignment and taxonomy information

>gi\|380020011\|ref\|XP_003693892.1\| PREDICTED: putative neutral sphingomyelinase-like [Apis florea]	Back alignment and taxonomy information

>gi\|328785734\|ref\|XP_395633.4\| PREDICTED: putative neutral sphingomyelinase-like [Apis mellifera]	Back alignment and taxonomy information

>gi\|156551960\|ref\|XP_001602349.1\| PREDICTED: putative neutral sphingomyelinase-like [Nasonia vitripennis]	Back alignment and taxonomy information

>gi\|332022825\|gb\|EGI63098.1\| Putative neutral sphingomyelinase [Acromyrmex echinatior]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		136
FB\|FBgn0035421		442	CG12034 [Drosophila melanogast	0.882	0.271	0.575	3.1e-35
RGD\|619753		422	Smpd2 "sphingomyelin phosphodi	0.875	0.281	0.428	1.1e-24
UNIPROTKB\|E2RQN3		423	SMPD2 "Uncharacterized protein	0.882	0.283	0.433	2e-24
UNIPROTKB\|F1RSY4		423	SMPD2 "Uncharacterized protein	0.882	0.283	0.416	3.5e-24
UNIPROTKB\|F1N588		423	SMPD2 "Uncharacterized protein	0.882	0.283	0.416	6e-24
UNIPROTKB\|O60906		423	SMPD2 "Sphingomyelin phosphodi	0.882	0.283	0.416	1.4e-23
UNIPROTKB\|E1C2Y6		410	SMPD2 "Uncharacterized protein	0.852	0.282	0.422	1.4e-23
WB\|WBGene00012105		434	T27F6.6 [Caenorhabditis elegan	0.867	0.271	0.453	1.6e-23
MGI\|MGI:1278330		419	Smpd2 "sphingomyelin phosphodi	0.875	0.284	0.403	1.4e-22
ZFIN\|ZDB-GENE-051014-1		421	smpd2 "sphingomyelin phosphodi	0.882	0.285	0.433	1.2e-21

FB\|FBgn0035421 CG12034 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

 Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
 Identities = 69/120 (57%), Positives = 87/120 (72%)

Query:     1 GIPKVSKDRDIRIRAIAAELACNKYDIVCLQEVWKNDDFELIKSVVFEALPYAHYFYSGV 60
             GIP VS DR  RI AI  ELA  KYDIV LQEVW  +D EL++      LP++HYF+SGV
Sbjct:    15 GIPYVSSDRRPRIDAICKELASGKYDIVSLQEVWAQEDSELLQKGTEAVLPHSHYFHSGV 74

Query:    61 MGSGVCILSRYEITEVLFHQWQLNGYIHKIFHADWFGGKGVGLCQVLVNGFRLNVYTTHV 120
             MG+G+ +LS+Y I   LFH W +NGY H+I HADWFGGKGVGLC++LV G  +++Y  H+
Sbjct:    75 MGAGLLVLSKYPILGTLFHAWSVNGYFHRIQHADWFGGKGVGLCRILVGGQMVHLYNAHL 134

GO:0006684 "sphingomyelin metabolic process" evidence=ISS

GO:0004767 "sphingomyelin phosphodiesterase activity" evidence=ISS;NAS

RGD\|619753 Smpd2 "sphingomyelin phosphodiesterase 2, neutral membrane" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|E2RQN3 SMPD2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RSY4 SMPD2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|F1N588 SMPD2 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|O60906 SMPD2 "Sphingomyelin phosphodiesterase 2" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|E1C2Y6 SMPD2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

WB\|WBGene00012105 T27F6.6 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

MGI\|MGI:1278330 Smpd2 "sphingomyelin phosphodiesterase 2, neutral" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-051014-1 smpd2 "sphingomyelin phosphodiesterase 2, neutral" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9VZS6	NSMA_DROME	3, ., 1, ., 4, ., 1, 2	0.5564	0.9117	0.2805	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		136
cd09079		259	cd09079, RgfB-like, Streptococcus agalactiae RgfB,	2e-13
cd09078		280	cd09078, nSMase, Neutral sphingomyelinases (nSMase	8e-11
COG0708		261	COG0708, XthA, Exonuclease III [DNA replication, r	2e-07
cd09084		246	cd09084, EEP-2, Exonuclease-Endonuclease-Phosphata	4e-05
cd09086		254	cd09086, ExoIII-like_AP-endo, Escherichia coli exo	6e-05

>gnl\|CDD\|197313 cd09079, RgfB-like, Streptococcus agalactiae RgfB, part of a putative two component signal transduction system, and related proteins	Back alignment and domain information

 Score = 64.6 bits (158), Expect = 2e-13
 Identities = 28/132 (21%), Positives = 51/132 (38%), Gaps = 17/132 (12%)

Query: 7   KDRDIRIRAIAAELACNKYDIVCLQEVWKNDDFEL----IKSVVFEALPYAHYFYSGVMG 62
           +++  ++  +A  +A   YD++ LQEV ++ D  +    IK   F  L Y      G   
Sbjct: 12  ENQKEKLERLAKIIAEEDYDVIALQEVNQSIDAPVSQVPIKEDNFALLLYEKLRELGATY 71

Query: 63  SGVCILSRYEITEVLFHQWQLNGYIHKIFHADWFGGKGV-----GLCQVL-----VNGFR 112
               ILS     +       L+         D++  K          ++L     +NG  
Sbjct: 72  YWTWILSHIGYDKYDEGLAILSKRPIAEVE-DFYVSKSQDYTDYKSRKILGATIEINGQP 130

Query: 113 LNVYTTHVSISW 124
           ++VY+ H  + W
Sbjct: 131 IDVYSCH--LGW 140

This family includes Streptococcus agalactiae RgfB (for regulator of fibrinogen binding) and related proteins. The function of RgfB is unknown. It is part of a putative two component signal transduction system designated rgfBDAC (the rgf locus was identified in a screen for mutants of Streptococcus agalactiae with altered binding to fibrinogen). RgfA,-C,and -D do not belong to this superfamily: rgfA encodes a putative response regulator, and rgfC, a putative histidine kinase. All four genes are co-transcribed, and may be involved in regulating expression of bacterial cell surface components. This family belongs to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds. Length = 259

>gnl\|CDD\|197312 cd09078, nSMase, Neutral sphingomyelinases (nSMase) catalyze the hydrolysis of sphingomyelin in biological membranes to ceramide and phosphorylcholine	Back alignment and domain information

>gnl\|CDD\|223780 COG0708, XthA, Exonuclease III [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|197318 cd09084, EEP-2, Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily; uncharacterized family 2	Back alignment and domain information

>gnl\|CDD\|197320 cd09086, ExoIII-like_AP-endo, Escherichia coli exonuclease III (ExoIII) and Neisseria meningitides NExo-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		136
KOG3873\|consensus		422		99.95
TIGR03395		283	sphingomy sphingomyelin phosphodiesterase. Members	99.83
PRK11756		268	exonuclease III; Provisional	99.58
COG3568		259	ElsH Metal-dependent hydrolase [General function p	99.49
PTZ00297		1452	pantothenate kinase; Provisional	99.45
PRK05421		263	hypothetical protein; Provisional	99.45
KOG2756\|consensus		349		99.44
COG0708		261	XthA Exonuclease III [DNA replication, recombinati	99.37
PF03372		249	Exo_endo_phos: Endonuclease/Exonuclease/phosphatas	99.31
TIGR00195		254	exoDNase_III exodeoxyribonuclease III. The model b	99.03
TIGR00633		255	xth exodeoxyribonuclease III (xth). This family is	99.03
PLN03144		606	Carbon catabolite repressor protein 4 homolog; Pro	99.03
KOG2338\|consensus		495		98.74
PRK13911		250	exodeoxyribonuclease III; Provisional	98.65
PRK15251		271	cytolethal distending toxin subunit CdtB; Provisio	98.41
smart00476		276	DNaseIc deoxyribonuclease I. Deoxyribonuclease I c	98.09
COG5239		378	CCR4 mRNA deadenylase, exonuclease subunit and rel	97.85
smart00128		310	IPPc Inositol polyphosphate phosphatase, catalytic	97.69
COG3021		309	Uncharacterized protein conserved in bacteria [Fun	97.62
KOG0620\|consensus		361		97.15
KOG0566\|consensus		1080		90.01
PTZ00312		356	inositol-1,4,5-triphosphate 5-phosphatase; Provisi	89.73
KOG0808\|consensus		387		86.53
PLN03191		621	Type I inositol-1,4,5-trisphosphate 5-phosphatase	85.42

>KOG3873\|consensus	Back alignment and domain information

Probab=99.95  E-value=1.1e-28  Score=185.08  Aligned_cols=128  Identities=53%  Similarity=0.952  Sum_probs=122.5

Q ss_pred             CCCccccChHHHHHHHHHHHhcCCCcEEEEeeecCCCchHHHHHHHHhcCCceEEEcccCCCccEEEEecCccceeeEee
Q psy14558          1 GIPKVSKDRDIRIRAIAAELACNKYDIVCLQEVWKNDDFELIKSVVFEALPYAHYFYSGVMGSGVCILSRYEITEVLFHQ   80 (136)
Q Consensus         1 ~~~~~s~~~~~r~~~i~~~i~~~~pDIi~LQEv~~~~~~~~l~~~l~~~~~y~~~~~~~~~g~GvailSr~pi~~~~~~~   80 (136)
                      |+||.|+++..|++++.+.+.+...||+.|||++...+++.|.+.....|||.++|.+|..|.|+++|||+||.+...+.
T Consensus        18 gip~~Sk~R~~Rm~~~g~~l~~E~yDiv~LQEvWs~eD~~~L~~~~ss~yPysh~FHSGimGaGL~vfSK~PI~~t~~~~   97 (422)
T KOG3873|consen   18 GIPYVSKDRRHRMDAIGDELASEKYDIVSLQEVWSQEDFEYLQSGCSSVYPYSHYFHSGIMGAGLCVFSKHPILETLFHR   97 (422)
T ss_pred             ccccccchhHHHHHHHhHHHhhcccchhhHHHHHHHHHHHHHHHhccccCchHHhhhcccccCceEEeecCchhhhhhhc
Confidence            79999999999999999999999999999999999988888888888889999999999889999999999999999999


Q ss_pred             eccCCccceeecCcccCCcceEEEEEEECCEEEEEEEecCCCCCCCCC
Q psy14558         81 WQLNGYIHKIFHADWFGGKGVGLCQVLVNGFRLNVYTTHVSISWVIIP  128 (136)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~r~~~~~~v~~~g~~i~v~~tHl~~~~~~~~  128 (136)
                      ||.+++|+.|+++|||..|++..+.+.++|+.|+++||||++||++..
T Consensus        98 y~lNG~p~~i~rGDWf~GK~Vgl~~l~~~g~~v~~yntHLHAeY~rq~  145 (422)
T KOG3873|consen   98 YSLNGYPHAIHRGDWFGGKGVGLTVLLVGGRMVNLYNTHLHAEYDRQN  145 (422)
T ss_pred             cccCCccceeeeccccccceeEEEEEeeCCEEeeeeehhccccccccC
Confidence            999999999999999999999999999999999999999999998864

>TIGR03395 sphingomy sphingomyelin phosphodiesterase	Back alignment and domain information

>PRK11756 exonuclease III; Provisional	Back alignment and domain information

>COG3568 ElsH Metal-dependent hydrolase [General function prediction only]	Back alignment and domain information

>PTZ00297 pantothenate kinase; Provisional	Back alignment and domain information

>PRK05421 hypothetical protein; Provisional	Back alignment and domain information

>KOG2756\|consensus	Back alignment and domain information

>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair]	Back alignment and domain information

>PF03372 Exo_endo_phos: Endonuclease/Exonuclease/phosphatase family Subset of Pfam family Subset of Pfam family; InterPro: IPR005135 This domain is found in a large number of proteins including magnesium dependent endonucleases and phosphatases involved in intracellular signalling []	Back alignment and domain information

>TIGR00195 exoDNase_III exodeoxyribonuclease III	Back alignment and domain information

>TIGR00633 xth exodeoxyribonuclease III (xth)	Back alignment and domain information

>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional	Back alignment and domain information

>KOG2338\|consensus	Back alignment and domain information

>PRK13911 exodeoxyribonuclease III; Provisional	Back alignment and domain information

>PRK15251 cytolethal distending toxin subunit CdtB; Provisional	Back alignment and domain information

>smart00476 DNaseIc deoxyribonuclease I	Back alignment and domain information

>COG5239 CCR4 mRNA deadenylase, exonuclease subunit and related nucleases [RNA processing and modification]	Back alignment and domain information

>smart00128 IPPc Inositol polyphosphate phosphatase, catalytic domain homologues	Back alignment and domain information

>COG3021 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>KOG0620\|consensus	Back alignment and domain information

>KOG0566\|consensus	Back alignment and domain information

>PTZ00312 inositol-1,4,5-triphosphate 5-phosphatase; Provisional	Back alignment and domain information

>KOG0808\|consensus	Back alignment and domain information

>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		136
3i41_A		317	Beta-hemolysin; beta toxin, sphingomyelinase, toxi	8e-25
1zwx_A		301	SMCL, sphingomyelinase-C; dnase1-like fold, beta-h	9e-25
2ddr_A		306	Sphingomyelin phosphodiesterase; DNAse I like fold	3e-24
3teb_A		266	Endonuclease/exonuclease/phosphatase; PSI-biology,	2e-16
3l1w_A		257	Uncharacterized protein; APC29019.2, conserved pro	2e-07
3mpr_A		298	Putative endonuclease/exonuclease/phosphatase FAM	4e-06
3g6s_A		267	Putative endonuclease/exonuclease/phosphatase fami	5e-06
1ako_A		268	Exonuclease III; AP-endonuclease, DNA repair; 1.70	2e-05
2voa_A		257	AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP	3e-04
2jc5_A		259	Exodeoxyribonuclease; hydrolase, repair phosphodie	3e-04
1vyb_A		238	ORF2 contains A reverse transcriptase domain; endo	6e-04
2jc4_A		256	Exodeoxyribonuclease III; hydrolase, repair phosph	7e-04

>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A Length = 317	Back alignment and structure

 Score = 95.6 bits (237), Expect = 8e-25
 Identities = 27/135 (20%), Positives = 45/135 (33%), Gaps = 22/135 (16%)

Query: 1   GIPKVSKDRDIRIRAIAAELACNKYDIVCLQEVWKNDDFELIKSVVFEALPYAH------ 54
            +   +  +  R   I         D+V   E + N   + + S V +  PY        
Sbjct: 42  TVLYPNWGQYKRADLIGQSSYIKNNDVVIFNEAFDNGASDKLLSNVKKEYPYQTPVLGRS 101

Query: 55  ----------YFYSGVMGSGVCILSRYEITEVLFHQWQLNGYIHKIFHADWFGGKGVGLC 104
                     Y  +     GV I+S+Y I E + H ++           D    KG    
Sbjct: 102 QSGWDKTEGSYSSTVAEDGGVAIVSKYPIKEKIQHVFKSGC------GFDNDSNKGFVYT 155

Query: 105 QVLVNGFRLNVYTTH 119
           ++  NG  ++V  TH
Sbjct: 156 KIEKNGKNVHVIGTH 170

PyMOL of 3i41

>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3 Length = 301	Back alignment and structure

>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X Length = 306	Back alignment and structure

>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b} Length = 266	Back alignment and structure

>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis} Length = 257	Back alignment and structure

>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron} Length = 298	Back alignment and structure

>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482} Length = 267	Back alignment and structure

>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1 Length = 268	Back alignment and structure

>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus} Length = 257	Back alignment and structure

>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis} Length = 259	Back alignment and structure

>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A Length = 238	Back alignment and structure

>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis} Length = 256	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		136
3i41_A		317	Beta-hemolysin; beta toxin, sphingomyelinase, toxi	99.74
1zwx_A		301	SMCL, sphingomyelinase-C; dnase1-like fold, beta-h	99.73
2ddr_A		306	Sphingomyelin phosphodiesterase; DNAse I like fold	99.7
3teb_A		266	Endonuclease/exonuclease/phosphatase; PSI-biology,	99.66
4gew_A		362	5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosy	99.64
4fva_A		256	5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosy	99.63
3l1w_A		257	Uncharacterized protein; APC29019.2, conserved pro	99.54
4gz1_A		256	Tyrosyl-DNA phosphodiesterase 2; protein-DNA compl	99.51
1ako_A		268	Exonuclease III; AP-endonuclease, DNA repair; 1.70	99.49
3mpr_A		298	Putative endonuclease/exonuclease/phosphatase FAM	99.49
4f1h_A		250	Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA com	99.48
3g6s_A		267	Putative endonuclease/exonuclease/phosphatase fami	99.45
2jc4_A		256	Exodeoxyribonuclease III; hydrolase, repair phosph	99.36
1vyb_A		238	ORF2 contains A reverse transcriptase domain; endo	99.32
2jc5_A		259	Exodeoxyribonuclease; hydrolase, repair phosphodie	99.29
4b8c_D		727	Glucose-repressible alcohol dehydrogenase transcr	99.25
2j63_A		467	AP-endonuclease; base excision repair, lyase; 2.48	99.2
2voa_A		257	AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP	99.19
3ngq_A		398	CCR4-NOT transcription complex subunit 6-like; alp	99.16
1hd7_A		318	DNA-(apurinic or apyrimidinic site) lyase; DNA rep	99.08
1wdu_A		245	TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA	99.04
2o3h_A		285	DNA-(apurinic or apyrimidinic site) lyase; APE, en	99.04
1sr4_B		261	CDT B, cytolethal distending toxin protein B; bact	98.94
3g91_A		265	MTH0212, exodeoxyribonuclease; double-strand speci	98.92
2imq_X		282	Salivary nitrophorin; ferrous heme, beta-sandwich,	98.86
2f1n_A		262	CDT B, cytolethal distending toxin subunit B; E.co	98.8
2a40_B		260	Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse	98.78
1i9z_A		347	Synaptojanin, phosphatidylinositol phosphate phosp	98.65
2ei9_A		240	Non-LTR retrotransposon R1BMKS ORF2 protein; four	98.55
2xsw_A		357	72 kDa inositol polyphosphate 5-phosphatase; inosi	98.4
4a9c_A		316	Phosphatidylinositol-3,4,5-trisphosphate 5-phosph;	97.85
3mtc_A		313	Type II inositol-1,4,5-trisphosphate 5-phosphatas;	97.81

>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A	Back alignment and structure

Probab=99.74  E-value=1.7e-17  Score=124.44  Aligned_cols=112  Identities=23%  Similarity=0.251  Sum_probs=85.8

Q ss_pred             ChHHHHHHHHHHHhcCCCcEEEEeeecCCCchHHHHHHHHhcCCceEEEc-cc---C------------CCccEEEEecC
Q psy14558          8 DRDIRIRAIAAELACNKYDIVCLQEVWKNDDFELIKSVVFEALPYAHYFY-SG---V------------MGSGVCILSRY   71 (136)
Q Consensus         8 ~~~~r~~~i~~~i~~~~pDIi~LQEv~~~~~~~~l~~~l~~~~~y~~~~~-~~---~------------~g~GvailSr~   71 (136)
                      .+..|.+.++..+...+||||||||++.....+.+.+.|.+.|||.+... .+   +            .+.|++||||+
T Consensus        49 ~~~~R~~~i~~~~~~~~pDIv~LQEv~~~~~~~~l~~~L~~~~py~~~~~g~~~~~~~~~~~~y~~~~~~~~G~~ilSr~  128 (317)
T 3i41_A           49 GQYKRADLIGQSSYIKNNDVVIFNEAFDNGASDKLLSNVKKEYPYQTPVLGRSQSGWDKTEGSYSSTVAEDGGVAIVSKY  128 (317)
T ss_dssp             CHHHHHHHHHHCSTTSSCSEEEEEEECSHHHHHHHHHHTTTTCCEECCCTTSCSTTCSEEEESCCSSCSBCCCCEEEESS
T ss_pred             cHHHHHHHHHHHhhccCCCEEEEEeeccHHHHHHHHHHHHHhCCcccccCCccccCccCcccccccccccCCccEEEeCC
Confidence            46788888998988899999999999876444556667777799842111 11   1            11599999999


Q ss_pred             ccceeeEeeeccCCccceeecCcccCCcceEEEEEEECCEEEEEEEecCCCCCC
Q psy14558         72 EITEVLFHQWQLNGYIHKIFHADWFGGKGVGLCQVLVNGFRLNVYTTHVSISWV  125 (136)
Q Consensus        72 pi~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~v~~~g~~i~v~~tHl~~~~~  125 (136)
                      ||.....+.|+...      ..++...|+++.++++++|++|+|+||||.++..
T Consensus       129 Pi~~~~~~~~~~~~------~~d~~~~r~~~~~~i~~~g~~v~v~~~Hl~~~~~  176 (317)
T 3i41_A          129 PIKEKIQHVFKSGC------GFDNDSNKGFVYTKIEKNGKNVHVIGTHTQSEDS  176 (317)
T ss_dssp             CEEEEEEEECSCCC------SSGGGBCCEEEEEEEEETTEEEEEEEEECCCCCS
T ss_pred             CCccceeEECCCCC------CcccccCcceEEEEEEECCEEEEEEEECCCCCCC
Confidence            99998877776431      2355667999999999999999999999998653

PyMOL of 3i41

>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3	Back alignment and structure

>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X	Back alignment and structure

>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}	Back alignment and structure

>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A	Back alignment and structure

>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}	Back alignment and structure

>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}	Back alignment and structure

>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*	Back alignment and structure

>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1	Back alignment and structure

>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}	Back alignment and structure

>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*	Back alignment and structure

>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}	Back alignment and structure

>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}	Back alignment and structure

>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A	Back alignment and structure

>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}	Back alignment and structure

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}	Back alignment and structure

>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}	Back alignment and structure

>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}	Back alignment and structure

>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A	Back alignment and structure

>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A	Back alignment and structure

>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1	Back alignment and structure

>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A	Back alignment and structure

>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B	Back alignment and structure

>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A	Back alignment and structure

>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X*	Back alignment and structure

>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1	Back alignment and structure

>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D*	Back alignment and structure

>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A*	Back alignment and structure

>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}	Back alignment and structure

>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens}	Back alignment and structure

>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling, structural genomics consortium stockholm, magnesium binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB: 3nr8_B*	Back alignment and structure

>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} PDB: 3n9v_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		136
d2ddra1		299	d.151.1.3 (A:7-305) Sphingomyelin phosphodiesteras	2e-09
d1zwxa1		293	d.151.1.3 (A:41-333) Sphingomyelin phosphodiestera	3e-08
d1sr4b_		261	d.151.1.1 (B:) Cytolethal distending toxin subunit	2e-06
d2f1na1		250	d.151.1.1 (A:1-250) Cytolethal distending toxin su	3e-06
d2a40b1		260	d.151.1.1 (B:1-260) Deoxyribonuclease I {Cow (Bos	0.002

>d2ddra1 d.151.1.3 (A:7-305) Sphingomyelin phosphodiesterase C {Bacillus cereus [TaxId: 1396]} Length = 299	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: DNase I-like
superfamily: DNase I-like
family: Sphingomyelin phosphodiesterase-like
domain: Sphingomyelin phosphodiesterase C
species: Bacillus cereus [TaxId: 1396]

 Score = 51.9 bits (122), Expect = 2e-09
 Identities = 25/131 (19%), Positives = 43/131 (32%), Gaps = 23/131 (17%)

Query: 6   SKDRDIRIRAIAAELACNKYDIVCLQEVWKNDDFELIKSVVFEALPYAHYFY-------- 57
           +  +  R   I A       D+V L EV+ N   + +   + +  P              
Sbjct: 21  NWGQTERADLIGAADYIKNQDVVILNEVFDNSASDRLLGNLKKEYPNQTAVLGRSSGSEW 80

Query: 58  ---------SGVMGSGVCILSRYEITEVLFHQWQLNGYIHKIFHADWFGGKGVGLCQVLV 108
                    S     GV I+S++ I E + + +       K    D    KG    ++  
Sbjct: 81  DKTLGNYSSSTPEDGGVAIVSKWPIAEKIQYVF------AKGCGPDNLSNKGFVYTKIKK 134

Query: 109 NGFRLNVYTTH 119
           N   ++V  TH
Sbjct: 135 NDRFVHVIGTH 145

PyMOL of d2ddra1

>d1zwxa1 d.151.1.3 (A:41-333) Sphingomyelin phosphodiesterase C {Listeria ivanovii [TaxId: 1638]} Length = 293	Back information, alignment and structure

>d1sr4b_ d.151.1.1 (B:) Cytolethal distending toxin subunit B {Haemophilus ducreyi [TaxId: 730]} Length = 261	Back information, alignment and structure

>d2f1na1 d.151.1.1 (A:1-250) Cytolethal distending toxin subunit B {Escherichia coli [TaxId: 562]} Length = 250	Back information, alignment and structure

>d2a40b1 d.151.1.1 (B:1-260) Deoxyribonuclease I {Cow (Bos taurus) [TaxId: 9913]} Length = 260	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		136
d1zwxa1		293	Sphingomyelin phosphodiesterase C {Listeria ivanov	99.67
d2ddra1		299	Sphingomyelin phosphodiesterase C {Bacillus cereus	99.58
d1vyba_		236	Endonuclease domain of LINE-1 reverse transcriptas	99.23
d2imqx1		280	Salivary nitrophorin {Bedbug (Cimex lectularius) [	98.91
d1wdua_		228	Endonuclease domain of TRAS1 retrotransposon (ORF2	98.87
d2f1na1		250	Cytolethal distending toxin subunit B {Escherichia	98.77
d1sr4b_		261	Cytolethal distending toxin subunit B {Haemophilus	98.49
d1akoa_		268	DNA-repair enzyme exonuclease III {Escherichia col	98.38
d1hd7a_		275	DNA repair endonuclease Hap1 {Human (Homo sapiens)	98.3
d2a40b1		260	Deoxyribonuclease I {Cow (Bos taurus) [TaxId: 9913	98.23
d1i9za_		345	Synaptojanin, IPP5C domain {Fission yeast (Schizos	98.1

>d1zwxa1 d.151.1.3 (A:41-333) Sphingomyelin phosphodiesterase C {Listeria ivanovii [TaxId: 1638]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: DNase I-like
superfamily: DNase I-like
family: Sphingomyelin phosphodiesterase-like
domain: Sphingomyelin phosphodiesterase C
species: Listeria ivanovii [TaxId: 1638]

Probab=99.67  E-value=3.9e-16  Score=111.44  Aligned_cols=113  Identities=22%  Similarity=0.272  Sum_probs=82.1

Q ss_pred             ChHHHHHHHHHHHhcCCCcEEEEeeecCCCchHHHHHHHHhcCCceEEEccc----------------CCCccEEEEecC
Q psy14558          8 DRDIRIRAIAAELACNKYDIVCLQEVWKNDDFELIKSVVFEALPYAHYFYSG----------------VMGSGVCILSRY   71 (136)
Q Consensus         8 ~~~~r~~~i~~~i~~~~pDIi~LQEv~~~~~~~~l~~~l~~~~~y~~~~~~~----------------~~g~GvailSr~   71 (136)
                      ..+.|++.|++.|+..+|||||||||......+.+.+.+...|++.......                ..+.|++|+||+
T Consensus        24 ~~~~r~~~i~~~i~~~~~DVi~LQEv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ilsr~  103 (293)
T d1zwxa1          24 GQMHRADLIAQADYMKNNDVVILNEAFDTSASHRLLNNLREMYPHQTPVIGRSKHGWDKTEGNYSNFALEDGGVAVVSQW  103 (293)
T ss_dssp             CHHHHHHHHHTSGGGSSCSEEEEEEECSHHHHHHHHHHTTTTCCEECCCTTSCSTTCSEEEC-----CCBCCCCEEEESS
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEEccCCcchHHHHHHHHhhhccceehhcccccccccccccccccccccccceEEEecc
Confidence            4578899999999999999999999987654455555665555542211100                013689999999


Q ss_pred             ccceeeEeeeccCCccceeecCcccCCcceEEEEEEECCEEEEEEEecCCCCCCC
Q psy14558         72 EITEVLFHQWQLNGYIHKIFHADWFGGKGVGLCQVLVNGFRLNVYTTHVSISWVI  126 (136)
Q Consensus        72 pi~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~v~~~g~~i~v~~tHl~~~~~~  126 (136)
                      |+.....+.++....      .++...++++.+.+.++|..++|+|+||.+..+.
T Consensus       104 pi~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~  152 (293)
T d1zwxa1         104 PIVEKSQHIFQRGGG------ADRLSNKGFAYVKIMKNGKPYHIIGTHTQADDSL  152 (293)
T ss_dssp             CEEEEEEEECSCCCG------GGGGBCCEEEEEEEEETTEEEEEEEEECCCCCTT
T ss_pred             Ccccceeeeeecccc------ccccccceEEEEEEecCCceEEEEEeeeeccCCc
Confidence            999877665554332      2334568899999999999999999999985443

PyMOL of d1zwxa1

>d2ddra1 d.151.1.3 (A:7-305) Sphingomyelin phosphodiesterase C {Bacillus cereus [TaxId: 1396]}	Back information, alignment and structure

>d1vyba_ d.151.1.1 (A:) Endonuclease domain of LINE-1 reverse transcriptase homolog {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2imqx1 d.151.1.2 (X:3-282) Salivary nitrophorin {Bedbug (Cimex lectularius) [TaxId: 79782]}	Back information, alignment and structure

>d1wdua_ d.151.1.1 (A:) Endonuclease domain of TRAS1 retrotransposon (ORF2) {Silkworm (Bombyx mori) [TaxId: 7091]}	Back information, alignment and structure

>d2f1na1 d.151.1.1 (A:1-250) Cytolethal distending toxin subunit B {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1sr4b_ d.151.1.1 (B:) Cytolethal distending toxin subunit B {Haemophilus ducreyi [TaxId: 730]}	Back information, alignment and structure

>d1akoa_ d.151.1.1 (A:) DNA-repair enzyme exonuclease III {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1hd7a_ d.151.1.1 (A:) DNA repair endonuclease Hap1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2a40b1 d.151.1.1 (B:1-260) Deoxyribonuclease I {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1i9za_ d.151.1.2 (A:) Synaptojanin, IPP5C domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}	Back information, alignment and structure