Psyllid ID: psy14559

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-----
Protein Sequence
MAVDTVAPVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTPYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQSIQKPEAKSNEAAQREIEEAMSRVKEAQNMISAAIDPVIGILSKDKKKSHSPVRHLVIVLIVVDVALDLALEIGDDLEVVVRDVGHVREEDQDHVVDVLCLVIVRDPHVARDVHAPDHASVHLDVMMIRNVIVRREVYENVPEVKTRASPPLALPRPSLNQEV
Secondary Structure (PSIPRED)
ccccccccccccEEEEccccccccHHHHHHHHcccccEEEEEEEcccccccccccccEEEEEEccccHHHHHHHccccEEEccEEEEEccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccEEEEccccccccHHHHHHHHHHcccEEEEEEEEcccccccEEEEEEccHHcHHHHHHcccccccccEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHccEEEEcccccccccccccccccccccEEEEEEEEHHHHcccccccccEEEEEEccccccccccccccccEEEEEEccccccccccccccccEEEEEEEEEHHHHHHHHHccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEcccccccEEEEEEcccHHccHHHHHHHHHHcccEEEEEEccccccccccccEEEEEEEEccHHHHHHHHHcccEEEEEcEEEEEEccccccccHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHccccccccccccccHHHHHHHHEEEEEEcccccccHHHHHHHHHHcccEEEEEEEccccccEEEEEEEEccHHHHHHHHHccccEEccccEEEccccccEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHcccccccccccccccccEEEEEEEEEHHEEHccccccccEEEEEcccccccccccccEcEEEEEEcccccEEEcccccccccEHHHHHHHHHHEEEHHHHHcccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mavdtvapvKTKVVQVANIAPQATRDQMQTLFGYlgkvedlrlypiardvsipvqsricyvkffdekcvgisqhltntVFIDRAlvvtpynsgeipdEQRALEIAAqqqgpnsgepklpahvtnqiegvppnqvisthdpvlvqhglpqypplpitydtKKIEEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRfctrendtnkyalvefsdqacvipalklngtnlkgktlqmfhstqsiqkpeaksNEAAQREIEEAMSRVKEAQNMISAAIDPVIGilskdkkkshspvrHLVIVLIVVDVALDLALEIGDDLEVVVRDvghvreedqdHVVDVLCLVIvrdphvardvhapdhasvHLDVMMIRNVIVRREVyenvpevktraspplalprpslnqev
Flexible Loop (DISEMBL)
mavdtvapvktkvvqvaniapqatrdQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTPYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRTLVAINieesvspqeLVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHstqsiqkpeaksNEAAQREIEEAMSRVKEAQNMISAAIDPVIGILSKDKKKSHSPVRHLVIVLIVVDVALDLALEIGDDLEVVVRDVGhvreedqdhvvDVLCLVIVRDPHVArdvhapdhasvhldvMMIRNVIVRREVYenvpevktraspplalprpslnqev
Low Complexity Region (SEG)
MAVDTVAPVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTPYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQSIQKPEAKSNEAAQREIEEAMSRVKEAQNMISAAIDPVIGILSKDKKKSHSPVRHlvivlivvdvaldlalEIGDDLEVVVRDVGHVREEDQDHVVDVLCLVIVRDPHVARDVHAPDHASVHLDVMMIRNVIVRREVYENVPEVKTraspplalprpslNQEV
Disordered region (IsUnstruct)
********VKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTPYN******************************************VISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALKLNGTNLKGKTL*************************************ISAAIDPVIGILS********PVRHLVIVLIVVDVALDLALEIGDDLEVVVRDVGHVREEDQDHVVDVLCLVIVRDPHVARDVHAPDHASVHLDVMMIRNVIVRREVYENV**********************
Disordered Region (DISOPRED)
********VKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIA*****PVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTPYNSGEIPDEQRAL***************************************************************RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMF**********************************ISA******************PVRHLVIVLIVVDVAL*L**E*GDDLEV*****************DVLCLVIVRDPHVARDVHAPDHASVHLDVMMIRNVIVRREVYENVPEVKTRASPPLAL**P******
Disordered Region (DISEMBL)
MAVDTVAPVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTPYNSGEIPDEQRALEIAA*********PKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFH******************EIEEAMSRVKEAQNMISAAIDPVIGILS********PVRHLVIVLIVVDVALDLALEIGDDLEVVVRDVGHVREEDQDHVVDVLCLVIVRDPHVARDVHAPDHASVHLDVMMIRNVIVRREVYENVPEVKTRASPPLALPRPSLNQEV
Disordered Region (DISPRO)
******APVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTPYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQSIQKPEAKSNEAAQREIEEAMSRVKEAQNMISAAIDPVI***********SPVRHLVIVLIVVDVALDLALEIGDDLEVVVRDVGHVREEDQDHVVDVLCLVIVRDPHVARDVHAPDHASVHLDVMMIRNVIVRREVYENVPEVKTRASPPLALPR*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAVDTVAPVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTPYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQSIQKPEAKSxxxxxxxxxxxxxxxxxxxxxISAAIDPVIGILSKDKKKSHSPVRHLVIVLIVVDVALDLALEIGDDLEVVVRDVGHVREEDQDHVVDVLCLVIVRDPHVARDVHAPDHASVHLDVMMIRNVIVRREVYENVPEVKTRASPPLALPRPSLNQEV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	405	2.2.26 [Sep-21-2011]
O01159	452	Probable splicing factor,	yes	N/A	0.619	0.555	0.420	6e-47
Q05519	484	Serine/arginine-rich spli	no	N/A	0.338	0.283	0.461	6e-27
Q8WXA9	508	Splicing regulatory gluta	no	N/A	0.353	0.281	0.410	8e-22
Q9JKL7	494	Splicing regulatory gluta	no	N/A	0.353	0.289	0.410	8e-22
Q8BZX4	494	Splicing regulatory gluta	no	N/A	0.353	0.289	0.410	1e-21

>sp|O01159|RSP7_CAEEL Probable splicing factor, arginine/serine-rich 7 OS=Caenorhabditis elegans GN=rsp-7 PE=3 SV=3

 Score =  188 bits (478), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 108/257 (42%), Positives = 156/257 (60%), Gaps = 6/257 (2%)

Query: 10  KTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCV 69
           K K++ VANI+  ATRD +  +F YLGK++DL++YP   +++     +  ++KF DE+CV
Sbjct: 8   KVKILHVANISTSATRDHIYNMFNYLGKIQDLKVYPSEGNITANTLLKTAFIKFDDERCV 67

Query: 70  GISQHLTNTVFIDRALVVTPYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQI-EG 128
            ++QHLTNTV ID A+V  PY +  IPDE+             +G+ +LP HVTN+I E 
Sbjct: 68  EVAQHLTNTVVIDCAIVCLPYPNPVIPDEESFFNSGGST---TAGQRQLPPHVTNKIQES 124

Query: 129 VPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRTLVAINIEESVSPQELVDFFQ 188
              + ++ T DP L Q GLP YPPLP   D+ K+EEIRRT+   N+ + V   E+++ F 
Sbjct: 125 DDGSALLITVDPTLEQLGLPAYPPLPADTDSAKVEEIRRTVYVGNLPKGVDGNEVLELFN 184

Query: 189 K-VGTVNYIRFCTRENDT-NKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQSIQK 246
              G V Y R  +  +     YA VEFS QA V  AL+ +G   K + L++ HS  +I K
Sbjct: 185 MYFGEVMYARMASGPDALPCAYAYVEFSQQASVCNALQNDGFEFKERPLKIQHSRVAIIK 244

Query: 247 PEAKSNEAAQREIEEAM 263
           P+AK++E A  EIEEA+
Sbjct: 245 PQAKTDEQALGEIEEAI 261

Caenorhabditis elegans (taxid: 6239)

>sp|Q05519|SRS11_HUMAN Serine/arginine-rich splicing factor 11 OS=Homo sapiens GN=SRSF11 PE=1 SV=1

 Score =  122 bits (305), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 66/143 (46%), Positives = 89/143 (62%), Gaps = 6/143 (4%)

Query: 11  TKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVG 70
           T+V+QV N++P A+ +QM+TLFG+LGK+++LRL+P   D  +PV SR+C+VKF D     
Sbjct: 32  TEVIQVTNVSPSASSEQMRTLFGFLGKIDELRLFP-PDDSPLPVSSRVCFVKFHDPDSAV 90

Query: 71  ISQHLTNTVFIDRALVVTPYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVT----NQI 126
           ++QHLTNTVF+DRAL+V PY  G IPDE +AL + A         P      T     QI
Sbjct: 91  VAQHLTNTVFVDRALIVVPYAEGVIPDEAKALSLLAPANAVAGLLPGGGLLPTPNPLTQI 150

Query: 127 EGVPPNQVIS-THDPVLVQHGLP 148
             VP   + + T DP L   GLP
Sbjct: 151 GAVPLAALGAPTLDPALAALGLP 173

May function in pre-mRNA splicing.

Homo sapiens (taxid: 9606)

>sp|Q8WXA9|SREK1_HUMAN Splicing regulatory glutamine/lysine-rich protein 1 OS=Homo sapiens GN=SREK1 PE=1 SV=1

 Score =  105 bits (261), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 60/146 (41%), Positives = 89/146 (60%), Gaps = 3/146 (2%)

Query: 139 DPVLVQHG-LPQYPPLPITYDTKKIEEIRRTLVAINIE-ESVSPQELVDFFQKVGTVNYI 196
           DP +   G +PQ PPL    D  KI+EIRRT+   N+  ++ +  +L++FF++VG V ++
Sbjct: 38  DPNIATLGEIPQ-PPLMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFV 96

Query: 197 RFCTRENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQSIQKPEAKSNEAAQ 256
           R    E    ++A VEF+DQ  V  AL  NG     + L++ HS  +I KP   + +AA 
Sbjct: 97  RMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKINHSNNAIVKPPEMTPQAAA 156

Query: 257 REIEEAMSRVKEAQNMISAAIDPVIG 282
           +E+EE M RV+EAQ+ ISAAI+P  G
Sbjct: 157 KELEEVMKRVREAQSFISAAIEPESG 182

Participates in the regulation of alternative splicing by modulating the activity of other splice facors. Inhibits the splicing activity of SFRS1, SFRS2 and SFRS6. Augments the splicing activity of SFRS3.

Homo sapiens (taxid: 9606)

>sp|Q9JKL7|SREK1_RAT Splicing regulatory glutamine/lysine-rich protein 1 OS=Rattus norvegicus GN=Srek1 PE=1 SV=1

 Score =  105 bits (261), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 60/146 (41%), Positives = 89/146 (60%), Gaps = 3/146 (2%)

Query: 139 DPVLVQHG-LPQYPPLPITYDTKKIEEIRRTLVAINI-EESVSPQELVDFFQKVGTVNYI 196
           DP +   G +PQ PPL    D  KI+EIRRT+   N+  ++ +  +L++FF++VG V ++
Sbjct: 41  DPNITALGEIPQ-PPLMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFV 99

Query: 197 RFCTRENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQSIQKPEAKSNEAAQ 256
           R    E    ++A VEF+DQ  V  AL  NG     + L++ HS  +I KP   + +AA 
Sbjct: 100 RMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKINHSNNAIVKPPEMTPQAAA 159

Query: 257 REIEEAMSRVKEAQNMISAAIDPVIG 282
           +E+EE M RV+EAQ+ ISAAI+P  G
Sbjct: 160 KELEEVMKRVREAQSFISAAIEPESG 185

Participates in the regulation of alternative splicing by modulating the activity of other splice facors. Inhibits the splicing activity of SFRS1, SFRS2 and SFRS6. Augments the splicing activity of SFRS3.

Rattus norvegicus (taxid: 10116)

>sp|Q8BZX4|SREK1_MOUSE Splicing regulatory glutamine/lysine-rich protein 1 OS=Mus musculus GN=Srek1 PE=2 SV=1

 Score =  104 bits (260), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 60/146 (41%), Positives = 89/146 (60%), Gaps = 3/146 (2%)

Query: 139 DPVLVQHG-LPQYPPLPITYDTKKIEEIRRTLVAINI-EESVSPQELVDFFQKVGTVNYI 196
           DP +   G +PQ PPL    D  KI+EIRRT+   N+  ++ +  +L++FF++VG V ++
Sbjct: 41  DPNITTLGEIPQ-PPLMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFV 99

Query: 197 RFCTRENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQSIQKPEAKSNEAAQ 256
           R    E    ++A VEF+DQ  V  AL  NG     + L++ HS  +I KP   + +AA 
Sbjct: 100 RMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKINHSNNAIVKPPEMTPQAAA 159

Query: 257 REIEEAMSRVKEAQNMISAAIDPVIG 282
           +E+EE M RV+EAQ+ ISAAI+P  G
Sbjct: 160 KELEEVMKRVREAQSFISAAIEPESG 185

Participates in the regulation of alternative splicing by modulating the activity of other splice facors. Inhibits the splicing activity of SFRS1, SFRS2 and SFRS6. Augments the splicing activity of SFRS3.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	405
193704514	673	PREDICTED: hypothetical protein LOC10016	0.688	0.414	0.700	1e-114
357607075	588	hypothetical protein KGM_03830 [Danaus p	0.683	0.471	0.640	1e-102
332026615	493	Putative splicing factor, arginine/serin	0.681	0.559	0.635	1e-101
307177851	495	Probable splicing factor, arginine/serin	0.686	0.561	0.638	1e-101
340716414	487	PREDICTED: probable splicing factor, arg	0.681	0.566	0.642	1e-100
383866149	489	PREDICTED: probable splicing factor, arg	0.676	0.560	0.640	1e-100
350406337	487	PREDICTED: probable splicing factor, arg	0.681	0.566	0.642	1e-100
156554641	501	PREDICTED: probable splicing factor, arg	0.683	0.552	0.637	2e-99
307198835	455	Probable splicing factor, arginine/serin	0.669	0.595	0.617	3e-99
380019639	487	PREDICTED: probable splicing factor, arg	0.681	0.566	0.642	1e-96

>gi|193704514|ref|XP_001944340.1| PREDICTED: hypothetical protein LOC100161931 [Acyrthosiphon pisum]

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 199/284 (70%), Positives = 237/284 (83%), Gaps = 5/284 (1%)

Query: 11  TKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVG 70
           TKV+QV NIAPQAT+DQMQTLFG +GK+ED+RLYP  RDVS+PVQSRICYVK+FD  CV 
Sbjct: 14  TKVIQVTNIAPQATKDQMQTLFGCIGKIEDIRLYPQIRDVSVPVQSRICYVKYFDSLCVA 73

Query: 71  ISQHLTNTVFIDRALVVTPYNS--GEIPDEQRALEIAAQQQ---GPNSGEPKLPAHVTNQ 125
           ++QHLTNTVFIDRAL+VTPY S  G+IPDE RAL+IA Q     G    +PKLPAHV NQ
Sbjct: 74  VAQHLTNTVFIDRALIVTPYQSSVGDIPDEYRALDIANQANIVPGLYPSDPKLPAHVVNQ 133

Query: 126 IEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRTLVAINIEESVSPQELVD 185
           IEG+PPNQVI T+DPVL  +GLP YP LPITYD+++IEEIRRTL AIN++E+V+  EL+ 
Sbjct: 134 IEGIPPNQVIVTNDPVLASNGLPPYPQLPITYDSRRIEEIRRTLAAINVDENVTDDELIG 193

Query: 186 FFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQSIQ 245
           FFQK G V Y+R+C+REND  +YALVE+S+QA VI  LKLNG  L  + +Q+ H+TQ+I 
Sbjct: 194 FFQKAGDVKYVRWCSRENDITRYALVEYSEQASVIAGLKLNGVQLGSRPVQVTHATQAIA 253

Query: 246 KPEAKSNEAAQREIEEAMSRVKEAQNMISAAIDPVIGILSKDKK 289
           KP AKSNEAAQREIEEAM+RVKEAQ++ISAAIDPVIGILSKDKK
Sbjct: 254 KPMAKSNEAAQREIEEAMTRVKEAQSLISAAIDPVIGILSKDKK 297

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357607075|gb|EHJ65345.1| hypothetical protein KGM_03830 [Danaus plexippus]

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 180/281 (64%), Positives = 224/281 (79%), Gaps = 4/281 (1%)

Query: 11  TKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVG 70
           T+V+QV NIAPQAT+DQMQTLFGYLGK++D+RLYP  RDVS PVQSRICYVK++D   V 
Sbjct: 6   TRVIQVTNIAPQATKDQMQTLFGYLGKIDDIRLYPTIRDVSCPVQSRICYVKYYDSATVN 65

Query: 71  ISQHLTNTVFIDRALVVTPYNSGEIPDEQRALEIAAQQQ---GPNSGEPKLPAHVTNQIE 127
           ++QH+TNTVFIDRAL+V P  SGEIPDE RALE+++      G ++ EP+LPAHV N +E
Sbjct: 66  VAQHMTNTVFIDRALIVIPMQSGEIPDEHRALEMSSNGTLVPGLSTVEPRLPAHVINTLE 125

Query: 128 GVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRTLVAINIEESVSPQELVDFF 187
           G PPNQVI T+DP +   GLP YPPLP  YD++KIEEIRRTL+ I++ E  S Q+L+D F
Sbjct: 126 GAPPNQVIQTYDPNIAAAGLPPYPPLPAIYDSRKIEEIRRTLLLIDVGELTS-QQLIDHF 184

Query: 188 QKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQSIQKP 247
            + G V+Y+RFC RE D  KYAL+E ++Q  +  AL+LNG  L G+ +++ HST +I KP
Sbjct: 185 CQAGEVSYVRFCEREVDNLKYALIEMTEQESISKALQLNGVALNGQVIKVHHSTVAISKP 244

Query: 248 EAKSNEAAQREIEEAMSRVKEAQNMISAAIDPVIGILSKDK 288
           +AKSNEAAQREIEEAM RVKEAQN+ISAAIDPVIG+LSKDK
Sbjct: 245 QAKSNEAAQREIEEAMCRVKEAQNLISAAIDPVIGLLSKDK 285

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332026615|gb|EGI66724.1| Putative splicing factor, arginine/serine-rich 7 [Acromyrmex echinatior]

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 178/280 (63%), Positives = 222/280 (79%), Gaps = 4/280 (1%)

Query: 11  TKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVG 70
           TKVVQV NIAPQAT+DQMQTLFGYLGK+ED+RLYP  RDV++PVQSRICY+KF D+ CV 
Sbjct: 6   TKVVQVTNIAPQATKDQMQTLFGYLGKIEDIRLYPTIRDVAVPVQSRICYIKFHDQGCVA 65

Query: 71  ISQHLTNTVFIDRALVVTPYNSGEIPDEQRALEIAAQQQ---GPNSGEPKLPAHVTNQIE 127
           ++QH+TNTVFIDRAL+V PY +G+IPDEQRALE+        G    EPKLP +V N IE
Sbjct: 66  VAQHMTNTVFIDRALIVIPYQNGDIPDEQRALELTNNGTVVPGLYPSEPKLPPNVVNAIE 125

Query: 128 GVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRTLVAINIEESVSPQELVDFF 187
           G+PPN VI+T DP L  + LP YP LP   D+++IEEIRRTLV  N++ SVSP++L+DFF
Sbjct: 126 GIPPNHVITTMDPKLEANSLPSYPHLPGHLDSRRIEEIRRTLVVANLDTSVSPEQLLDFF 185

Query: 188 QKVG-TVNYIRFCTRENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQSIQK 246
                 + Y+R C+R++D + YALVE S+QA VI AL LNG     ++++++HSTQ+I K
Sbjct: 186 SNNNIEIKYLRMCSRDSDADHYALVELSEQAAVIAALLLNGKQFAERSIKLYHSTQAIAK 245

Query: 247 PEAKSNEAAQREIEEAMSRVKEAQNMISAAIDPVIGILSK 286
           PEAKSNEAAQ+EIEEAMSRVKEA N+ISAAIDP+IG+LSK
Sbjct: 246 PEAKSNEAAQKEIEEAMSRVKEAHNLISAAIDPMIGMLSK 285

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307177851|gb|EFN66814.1| Probable splicing factor, arginine/serine-rich 7 [Camponotus floridanus]

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 180/282 (63%), Positives = 224/282 (79%), Gaps = 4/282 (1%)

Query: 11  TKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVG 70
           TKVVQV NIAPQAT+DQMQTLFGYLGK+ED+RLYP  RDV++PVQSRICY+KF D+ CV 
Sbjct: 6   TKVVQVTNIAPQATKDQMQTLFGYLGKIEDIRLYPTIRDVAVPVQSRICYIKFHDQGCVA 65

Query: 71  ISQHLTNTVFIDRALVVTPYNSGEIPDEQRALEIAAQQQ---GPNSGEPKLPAHVTNQIE 127
           ++QH+TNTVFIDRAL+V PY +G+IPDEQRALE+        G    EPKLP +V N IE
Sbjct: 66  VAQHMTNTVFIDRALIVIPYQNGDIPDEQRALELTNNGTVVPGLYPSEPKLPPNVVNAIE 125

Query: 128 GVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRTLVAINIEESVSPQELVDFF 187
           G+PPN VI+T DP L  +GLP YP LP   D+++IEEIRRTL+  N++  VSP++L+DFF
Sbjct: 126 GIPPNHVITTMDPKLEANGLPPYPHLPGHLDSRRIEEIRRTLIVANLDSLVSPEQLLDFF 185

Query: 188 QKVGT-VNYIRFCTRENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQSIQK 246
                 + Y+R C+R++D+  YALVE S+QA VI AL LNG  L  + ++++HSTQ+I K
Sbjct: 186 SNNNVEIKYLRMCSRDSDSEHYALVELSEQAAVIAALLLNGKPLMERPIKIYHSTQAIAK 245

Query: 247 PEAKSNEAAQREIEEAMSRVKEAQNMISAAIDPVIGILSKDK 288
           PEAKSNEAAQ+EIEEAMSRVKEA N+ISAAIDP+IG+LSKDK
Sbjct: 246 PEAKSNEAAQKEIEEAMSRVKEAHNLISAAIDPMIGMLSKDK 287

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340716414|ref|XP_003396693.1| PREDICTED: probable splicing factor, arginine/serine-rich 7-like [Bombus terrestris]

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 180/280 (64%), Positives = 220/280 (78%), Gaps = 4/280 (1%)

Query: 11  TKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVG 70
           TKVVQV NIAPQAT+DQMQTLFGYLGK+ED+RLYP  RDV++PVQSRICY+KF D+ CV 
Sbjct: 6   TKVVQVTNIAPQATKDQMQTLFGYLGKIEDIRLYPTIRDVAVPVQSRICYIKFHDQGCVA 65

Query: 71  ISQHLTNTVFIDRALVVTPYNSGEIPDEQRALEIAAQQQ---GPNSGEPKLPAHVTNQIE 127
           ++QH+TNTVFIDRAL+V PY +G+IPDEQRALE+        G    EPKLP +V N IE
Sbjct: 66  VAQHMTNTVFIDRALIVIPYQNGDIPDEQRALELTNNGTVVPGLYPSEPKLPPNVVNAIE 125

Query: 128 GVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRTLVAINIEESVSPQELVDFF 187
           G+PPN VI+T DP L  +GLP YP LP   D+++IEEIRRTLV  N++ SV+   L+DFF
Sbjct: 126 GIPPNHVITTMDPKLEANGLPPYPHLPGHLDSRRIEEIRRTLVLANLDPSVTTDHLLDFF 185

Query: 188 QKVGT-VNYIRFCTRENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQSIQK 246
                 V Y+R CTR++DT  YALVE S+QA V+ AL LNG  L  + ++++HSTQ+I K
Sbjct: 186 SNNNVEVKYLRMCTRDSDTEHYALVELSEQAAVVSALLLNGKLLMDRPIKIYHSTQAIAK 245

Query: 247 PEAKSNEAAQREIEEAMSRVKEAQNMISAAIDPVIGILSK 286
           PEAKSNEAAQ+EIEEAMSRVKEA N+ISAAIDP+IG+LSK
Sbjct: 246 PEAKSNEAAQKEIEEAMSRVKEAHNLISAAIDPMIGMLSK 285

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383866149|ref|XP_003708534.1| PREDICTED: probable splicing factor, arginine/serine-rich 7-like [Megachile rotundata]

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 182/284 (64%), Positives = 223/284 (78%), Gaps = 10/284 (3%)

Query: 11  TKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVG 70
           TKVVQV NIAPQAT+DQMQTLFGYLGK+ED+RLYP  RDV++PVQSRICY+KF D+ CV 
Sbjct: 6   TKVVQVTNIAPQATKDQMQTLFGYLGKIEDIRLYPTIRDVAVPVQSRICYIKFHDQGCVA 65

Query: 71  ISQHLTNTVFIDRALVVTPYNSGEIPDEQRALEIAAQQQ---GPNSGEPKLPAHVTNQIE 127
           ++QH+TNTVFIDRAL+V PY +G+IPDEQRALE+        G    EPKLP +V N IE
Sbjct: 66  VAQHMTNTVFIDRALIVIPYQNGDIPDEQRALELTNNGTVVPGLYPSEPKLPPNVVNAIE 125

Query: 128 GVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRTLVAINIEESVSPQELVDFF 187
           G+PPN VI+T DP L  +GLP YP LP   D+++IEEIRRTLV  N++ SV+   L+DFF
Sbjct: 126 GIPPNHVITTMDPKLEANGLPPYPHLPGHLDSRRIEEIRRTLVLANLDPSVTTDHLLDFF 185

Query: 188 QKVGTVN----YIRFCTRENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQS 243
              GT N    Y+R C+R++DT  YALVE S+QA V+ AL LNG  L  + ++++HSTQ+
Sbjct: 186 ---GTNNVEVKYLRMCSRDSDTEHYALVELSEQAAVVSALLLNGKVLVDRPIKIYHSTQA 242

Query: 244 IQKPEAKSNEAAQREIEEAMSRVKEAQNMISAAIDPVIGILSKD 287
           I KPEAKSNEAAQ+EIEEAMSRVKEA N+ISAAIDP+IG+LSKD
Sbjct: 243 IAKPEAKSNEAAQKEIEEAMSRVKEAHNLISAAIDPMIGMLSKD 286

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350406337|ref|XP_003487737.1| PREDICTED: probable splicing factor, arginine/serine-rich 7-like [Bombus impatiens]

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 180/280 (64%), Positives = 220/280 (78%), Gaps = 4/280 (1%)

Query: 11  TKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVG 70
           TKVVQV NIAPQAT+DQMQTLFGYLGK+ED+RLYP  RDV++PVQSRICY+KF D+ CV 
Sbjct: 6   TKVVQVTNIAPQATKDQMQTLFGYLGKIEDIRLYPTIRDVAVPVQSRICYIKFHDQGCVA 65

Query: 71  ISQHLTNTVFIDRALVVTPYNSGEIPDEQRALEIAAQQQ---GPNSGEPKLPAHVTNQIE 127
           ++QH+TNTVFIDRAL+V PY +G+IPDEQRALE+        G    EPKLP +V N IE
Sbjct: 66  VAQHMTNTVFIDRALIVIPYQNGDIPDEQRALELTNNGTVVPGLYPSEPKLPPNVVNAIE 125

Query: 128 GVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRTLVAINIEESVSPQELVDFF 187
           G+PPN VI+T DP L  +GLP YP LP   D+++IEEIRRTLV  N++ SV+   L+DFF
Sbjct: 126 GIPPNHVITTMDPKLEANGLPPYPHLPGHLDSRRIEEIRRTLVLANLDPSVTTDHLLDFF 185

Query: 188 QKVGT-VNYIRFCTRENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQSIQK 246
                 V Y+R CTR++DT  YALVE S+QA V+ AL LNG  L  + ++++HSTQ+I K
Sbjct: 186 SNNNVEVKYLRMCTRDSDTEHYALVELSEQAAVVSALLLNGKLLMDRPIKIYHSTQAIAK 245

Query: 247 PEAKSNEAAQREIEEAMSRVKEAQNMISAAIDPVIGILSK 286
           PEAKSNEAAQ+EIEEAMSRVKEA N+ISAAIDP+IG+LSK
Sbjct: 246 PEAKSNEAAQKEIEEAMSRVKEAHNLISAAIDPMIGMLSK 285

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156554641|ref|XP_001605226.1| PREDICTED: probable splicing factor, arginine/serine-rich 7-like [Nasonia vitripennis]

 Score =  369 bits (946), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 179/281 (63%), Positives = 220/281 (78%), Gaps = 4/281 (1%)

Query: 11  TKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVG 70
           TKVVQV NIAPQAT+DQMQTLFGYLGK+ED+RLYP  RDV++PVQSRICY+KF D   V 
Sbjct: 7   TKVVQVTNIAPQATKDQMQTLFGYLGKIEDIRLYPTIRDVAVPVQSRICYIKFHDTNHVA 66

Query: 71  ISQHLTNTVFIDRALVVTPYNSGEIPDEQRALEIAAQQQ---GPNSGEPKLPAHVTNQIE 127
           ++QH+TNTVFIDRAL+V PY +G+IPDEQRALE+        G    EPKLP +V N IE
Sbjct: 67  VAQHMTNTVFIDRALIVIPYQNGDIPDEQRALELTNNGSVVPGLYPSEPKLPPNVVNAIE 126

Query: 128 GVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRTLVAINIEESVSPQELVDFF 187
           G+PPN VI+T DP L  +GLP YP LP   D++KIEEIRRTLV  N++ S + Q+L++FF
Sbjct: 127 GIPPNHVITTMDPKLEANGLPLYPHLPGHLDSRKIEEIRRTLVVGNLDASTTDQQLIEFF 186

Query: 188 QKVGT-VNYIRFCTRENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQSIQK 246
                 V Y R CTR++DT+ YALVEFS+QA ++PAL+LNG  L  + +++ HS Q+I K
Sbjct: 187 GNHNVEVKYTRLCTRDSDTDHYALVEFSEQASIVPALQLNGQMLNDRPIKIGHSVQAIMK 246

Query: 247 PEAKSNEAAQREIEEAMSRVKEAQNMISAAIDPVIGILSKD 287
           PEAKSNEAAQ+EIEEAMSRVKEA N+ISA IDP+IG+LSKD
Sbjct: 247 PEAKSNEAAQKEIEEAMSRVKEAHNLISATIDPMIGMLSKD 287

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307198835|gb|EFN79611.1| Probable splicing factor, arginine/serine-rich 7 [Harpegnathos saltator]

 Score =  368 bits (944), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 174/282 (61%), Positives = 222/282 (78%), Gaps = 11/282 (3%)

Query: 11  TKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVG 70
           TKVVQV NIAPQAT+DQMQTLFGYLGK+ED+RLYP  RDV++PVQSRICY+KF D+ CV 
Sbjct: 6   TKVVQVTNIAPQATKDQMQTLFGYLGKIEDIRLYPTIRDVAVPVQSRICYIKFHDQGCVA 65

Query: 71  ISQHLTNTVFIDRALVVTPYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVP 130
           ++QH+TNTVFIDRAL+V PY +G+IPDEQR              EPKLP +V N IEG+P
Sbjct: 66  VAQHMTNTVFIDRALIVIPYQNGDIPDEQRLY----------PSEPKLPPNVVNAIEGIP 115

Query: 131 PNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRTLVAINIEESVSPQELVDFFQKV 190
           PN VI+T DP L  +GLP YP LP   D+++IEEIRRTL+  N++ SVS ++L++FF   
Sbjct: 116 PNHVITTMDPKLEANGLPPYPHLPGHLDSRRIEEIRRTLIVANLDASVSAEQLLEFFSNN 175

Query: 191 GT-VNYIRFCTRENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQSIQKPEA 249
              + Y+R C+R++DT  YALVE S+Q  V+ AL LNG +L  + ++++HSTQ+I KPEA
Sbjct: 176 NVEIKYLRMCSRDSDTEHYALVELSEQGAVVAALLLNGKSLAERPIKIYHSTQAIAKPEA 235

Query: 250 KSNEAAQREIEEAMSRVKEAQNMISAAIDPVIGILSKDKKKS 291
           KSNEAAQ+EIEEAMSRVKEA N+ISAAIDP+IG+LSKDK+++
Sbjct: 236 KSNEAAQKEIEEAMSRVKEAHNLISAAIDPMIGMLSKDKRRA 277

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380019639|ref|XP_003693710.1| PREDICTED: probable splicing factor, arginine/serine-rich 7-like [Apis florea]

 Score =  360 bits (923), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 180/280 (64%), Positives = 220/280 (78%), Gaps = 4/280 (1%)

Query: 11  TKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVG 70
           TKVVQV NIAPQAT+DQMQTLFGYLGK+ED+RLYP  RDV++PVQSRICY+KF D+ CV 
Sbjct: 6   TKVVQVTNIAPQATKDQMQTLFGYLGKIEDIRLYPTIRDVAVPVQSRICYIKFHDQGCVA 65

Query: 71  ISQHLTNTVFIDRALVVTPYNSGEIPDEQRALEIAAQQQ---GPNSGEPKLPAHVTNQIE 127
           ++QH+TNTVFIDRAL+V PY +G+IPDEQRALE+        G    EPKLP +V N IE
Sbjct: 66  VAQHMTNTVFIDRALIVIPYQNGDIPDEQRALELTNNGTVVPGLYPSEPKLPPNVVNTIE 125

Query: 128 GVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRTLVAINIEESVSPQELVDFF 187
           G+PPN VI+T DP L  +GLP YP LP   D+++IEEIRRTLV  N++ SV+   L+DFF
Sbjct: 126 GIPPNHVITTIDPKLEANGLPPYPHLPGHLDSRRIEEIRRTLVLANLDPSVTTDHLLDFF 185

Query: 188 QKVGT-VNYIRFCTRENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQSIQK 246
                 V Y+R CTR++DT  YALVE S+QA V+ AL LNG  L  + ++++HSTQ+I K
Sbjct: 186 SNNNVEVKYLRMCTRDSDTEHYALVELSEQAAVVSALLLNGKLLLDRAIKIYHSTQAIAK 245

Query: 247 PEAKSNEAAQREIEEAMSRVKEAQNMISAAIDPVIGILSK 286
           PEAKSNEAAQ+EIEEAMSRVKEA N+ISAAIDP+IG+LSK
Sbjct: 246 PEAKSNEAAQKEIEEAMSRVKEAHNLISAAIDPMIGMLSK 285

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	405
FB|FBgn0024285	513	Srp54 "Srp54" [Drosophila mela	0.679	0.536	0.563	1.4e-78
UNIPROTKB|J9P0H2	626	SREK1 "Uncharacterized protein	0.691	0.447	0.408	7.4e-50
WB|WBGene00004704	452	rsp-7 [Caenorhabditis elegans	0.619	0.555	0.420	8.8e-47
ZFIN|ZDB-GENE-040801-132	515	srek1 "splicing regulatory glu	0.693	0.545	0.375	3.8e-46
UNIPROTKB|Q5T760	389	SRSF11 "Serine/arginine-rich-s	0.335	0.349	0.472	3.5e-38
UNIPROTKB|Q148M1	482	SFRS11 "Uncharacterized protei	0.335	0.282	0.472	9.5e-38
UNIPROTKB|Q19QT0	483	SFRS11 "Uncharacterized protei	0.335	0.281	0.472	9.9e-38
UNIPROTKB|Q05519	484	SRSF11 "Serine/arginine-rich s	0.335	0.280	0.472	1e-37
RGD|1559953	476	Srsf11 "serine/arginine-rich s	0.335	0.285	0.465	2.5e-37
UNIPROTKB|F1NA16	475	Gga.54187 "Uncharacterized pro	0.562	0.48	0.384	3.9e-37

FB|FBgn0024285 Srp54 "Srp54" [Drosophila melanogaster (taxid:7227)]

 Score = 790 (283.2 bits), Expect = 1.4e-78, P = 1.4e-78
 Identities = 159/282 (56%), Positives = 205/282 (72%)

Query:    12 KVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGI 71
             +V+QV NIAPQAT+DQMQTLFG +GK+E++RLYP  RDVS PVQSRICYVK+ D   V +
Sbjct:     8 RVIQVTNIAPQATKDQMQTLFGNIGKIEEIRLYPTIRDVSCPVQSRICYVKYTDTTSVPV 67

Query:    72 SQHLTNTVFIDRALVVTPYNSGEIPDEQRALEIAAQQQ---GPNSGEPKLPAHVTNQIEG 128
             +QHLTNTVFIDRAL+V P  +  IP+E RALE+        G    + KLP  V N+IEG
Sbjct:    68 AQHLTNTVFIDRALIVIPVLA--IPEEYRALEMLKNGTIVPGLQKPDSKLPPEVINRIEG 125

Query:   129 VPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRTLVAINIEESVSPQELVDFFQ 188
               P QVI T+DP LV+  LP+YP LP  YD +KIEEIRRT++  +++      +L++ FQ
Sbjct:   126 QLPQQVIKTYDPKLVEFNLPEYPALPSFYDARKIEEIRRTIIVCDVKNEWRLDDLMECFQ 185

Query:   189 KVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQSIQKPE 248
             + G V Y R+  ++N T  Y ++EF +Q  +I AL++ G   KG  L ++HST SI KPE
Sbjct:   186 RAGEVKYARWAEKDNKT--YCMIEFCEQTSIIHALRMQGQEFKGGHLSVYHSTYSITKPE 243

Query:   249 AKSNEAAQREIEEAMSRVKEAQNMISAAIDPVIGILSKDKKK 290
             AKSNEAAQ EIEEAM+ VKEAQ+MISAAIDPVIG+L+KDK++
Sbjct:   244 AKSNEAAQAEIEEAMTIVKEAQSMISAAIDPVIGMLAKDKRR 285

GO:0008187 "poly-pyrimidine tract binding" evidence=IDA

GO:0003729 "mRNA binding" evidence=ISS;NAS

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS;NAS

GO:0005681 "spliceosomal complex" evidence=ISS;NAS

GO:0006376 "mRNA splice site selection" evidence=ISS

GO:0000166 "nucleotide binding" evidence=IEA

GO:0000381 "regulation of alternative mRNA splicing, via spliceosome" evidence=IMP

GO:0005634 "nucleus" evidence=IC

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0071011 "precatalytic spliceosome" evidence=IDA

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|J9P0H2 SREK1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 519 (187.8 bits), Expect = 7.4e-50, P = 7.4e-50
 Identities = 120/294 (40%), Positives = 175/294 (59%)

Query:    11 TKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVG 70
             T V+QV N++   T +QM+TLF +LG++E+LRLYP   +  +   S++CYVKF D   VG
Sbjct:    18 TAVIQVTNLSSAVTSEQMRTLFSFLGEIEELRLYP-PDNAPLAFSSKVCYVKFRDPSSVG 76

Query:    71 ISQHLTNTVFIDRALVVTPYNSGEIPDEQRALEIAAQQQGPNS---GEPKLPAHVTNQIE 127
             ++QHLTNTVFIDRAL+V P   G+IP+E +AL + A      S   G   LP    N + 
Sbjct:    77 VAQHLTNTVFIDRALIVVPCAEGKIPEESKALSLLAPAPTMTSLMPGAGLLPIPTPNPLT 136

Query:   128 --GVPPNQV----ISTHDPVLVQHG-LPQYPPLPITYDTKKIEEIRRTLVAINIE-ESVS 179
               GV  + +     +  DP +   G +PQ PPL    D  KI+EIRRT+   N+  ++ +
Sbjct:   137 TLGVSLSSLGAIPAAALDPNIATLGEIPQ-PPLMGNVDPSKIDEIRRTVYVGNLNSQTTT 195

Query:   180 PQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFH 239
               +L++FF++VG V ++R    E    ++A VEF+DQ  V  AL  NG     + L++ H
Sbjct:   196 ADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKINH 255

Query:   240 STQSIQKPEAKSNEAAQREIEEAMSRVKEAQNMISAAIDPVIGILSKDKKKSHS 293
             S  +I KP   + +AA +E+EE M RV+EAQ+ ISAAI+P  G  S ++K   S
Sbjct:   256 SNNAIVKPPEMTPQAAAKELEEVMKRVREAQSFISAAIEPESG-KSNERKGGRS 308

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

WB|WBGene00004704 rsp-7 [Caenorhabditis elegans (taxid:6239)]

 Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
 Identities = 108/257 (42%), Positives = 156/257 (60%)

Query:    10 KTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCV 69
             K K++ VANI+  ATRD +  +F YLGK++DL++YP   +++     +  ++KF DE+CV
Sbjct:     8 KVKILHVANISTSATRDHIYNMFNYLGKIQDLKVYPSEGNITANTLLKTAFIKFDDERCV 67

Query:    70 GISQHLTNTVFIDRALVVTPYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQI-EG 128
              ++QHLTNTV ID A+V  PY +  IPDE+             +G+ +LP HVTN+I E 
Sbjct:    68 EVAQHLTNTVVIDCAIVCLPYPNPVIPDEESFFNSGGST---TAGQRQLPPHVTNKIQES 124

Query:   129 VPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRTLVAINIEESVSPQELVDFFQ 188
                + ++ T DP L Q GLP YPPLP   D+ K+EEIRRT+   N+ + V   E+++ F 
Sbjct:   125 DDGSALLITVDPTLEQLGLPAYPPLPADTDSAKVEEIRRTVYVGNLPKGVDGNEVLELFN 184

Query:   189 KV-GTVNYIRFCTRENDTN-KYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQSIQK 246
                G V Y R  +  +     YA VEFS QA V  AL+ +G   K + L++ HS  +I K
Sbjct:   185 MYFGEVMYARMASGPDALPCAYAYVEFSQQASVCNALQNDGFEFKERPLKIQHSRVAIIK 244

Query:   247 PEAKSNEAAQREIEEAM 263
             P+AK++E A  EIEEA+
Sbjct:   245 PQAKTDEQALGEIEEAI 261

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0040017 "positive regulation of locomotion" evidence=IMP

GO:0019915 "lipid storage" evidence=IMP

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0016246 "RNA interference" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS

ZFIN|ZDB-GENE-040801-132 srek1 "splicing regulatory glutamine/lysine-rich protein 1" [Danio rerio (taxid:7955)]

 Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
 Identities = 110/293 (37%), Positives = 172/293 (58%)

Query:    11 TKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVG 70
             T V+Q+ N++   + DQM+TLFG+LG +++LRLYP   +  +   S++CY+K+ +   VG
Sbjct:     7 TNVIQITNLSAAVSSDQMRTLFGFLGDIDELRLYP-PDNAPLSFSSKVCYIKYREPSSVG 65

Query:    71 ISQHLTNTVFIDRALVVTPYNSGEIPDEQRALEIAAQQQGPNS-----GEPKLPAHVTNQ 125
             ++QHLTNTVFIDRAL+V P   G+IP+E +AL + A      S     G   +P+  T Q
Sbjct:    66 VAQHLTNTVFIDRALIVVPCAEGKIPEEAKALSLLAPATPVASLMSGGGLLPIPSPSTLQ 125

Query:   126 IEGVP-PNQVI--STHDP-VLVQHGLPQYPPLPITYDTKKIEEIRRTLVAINIE-ESVSP 180
                +P  N  +  S+ D  V     +   PPL    D  K++EIRRT+   N+  +S + 
Sbjct:   126 NRSLPLANLGVLKSSLDTSVATLSAVSAQPPLMGNVDPSKVDEIRRTVYVGNLNSQSTTA 185

Query:   181 QELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHS 240
              +L+ FF++VG V ++R    E    ++A VEF+DQ  V  AL  NG     + L++ HS
Sbjct:   186 DQLLKFFKQVGDVKFVRMAGDETQPTRFAFVEFADQDSVARALTYNGVMFGDRPLKINHS 245

Query:   241 TQSIQKPEAKSNEAAQREIEEAMSRVKEAQNMISAAIDPVIGILSKDKKKSHS 293
               +I KP   + +AA +E+E+ M +V+EAQ+ I+AAI+P   + S  + + HS
Sbjct:   246 NNAIVKPPELTPQAAAKELEDVMKKVREAQSTIAAAIEPENELPSSSRSR-HS 297

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q5T760 SRSF11 "Serine/arginine-rich-splicing factor 11" [Homo sapiens (taxid:9606)]

 Score = 315 (115.9 bits), Expect = 3.5e-38, Sum P(2) = 3.5e-38
 Identities = 68/144 (47%), Positives = 91/144 (63%)

Query:    11 TKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVG 70
             T+V+QV N++P A+ +QM+TLFG+LGK+++LRL+P   D  +PV SR+C+VKF D     
Sbjct:    32 TEVIQVTNVSPSASSEQMRTLFGFLGKIDELRLFP-PDDSPLPVSSRVCFVKFHDPDSAV 90

Query:    71 ISQHLTNTVFIDRALVVTPYNSGEIPDEQRALEIAAQQQG-----PNSGEPKLPAHVTNQ 125
             ++QHLTNTVF+DRAL+V PY  G IPDE +AL + A         P  G    P  +T Q
Sbjct:    91 VAQHLTNTVFVDRALIVVPYAEGVIPDEAKALSLLAPANAVAGLLPGGGLLPTPNPLT-Q 149

Query:   126 IEGVPPNQV-ISTHDPVLVQHGLP 148
             I  VP   +   T DP L   GLP
Sbjct:   150 IGAVPLAALGAPTLDPALAALGLP 173

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|Q148M1 SFRS11 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 315 (115.9 bits), Expect = 9.5e-38, Sum P(2) = 9.5e-38
 Identities = 68/144 (47%), Positives = 91/144 (63%)

Query:    11 TKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVG 70
             T+V+QV N++P A+ +QM+TLFG+LGK+++LRL+P   D  +PV SR+C+VKF D     
Sbjct:    31 TEVIQVTNVSPSASSEQMRTLFGFLGKIDELRLFP-PDDSPLPVSSRVCFVKFHDPDSAV 89

Query:    71 ISQHLTNTVFIDRALVVTPYNSGEIPDEQRALEIAAQQQG-----PNSGEPKLPAHVTNQ 125
             ++QHLTNTVF+DRAL+V PY  G IPDE +AL + A         P  G    P  +T Q
Sbjct:    90 VAQHLTNTVFVDRALIVVPYAEGVIPDETKALSLLAPANAVAGLLPGGGLLPTPNPLT-Q 148

Query:   126 IEGVPPNQV-ISTHDPVLVQHGLP 148
             I  VP   +   T DP L   GLP
Sbjct:   149 IGAVPLAALGAPTLDPALAALGLP 172

GO:0005634 "nucleus" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|Q19QT0 SFRS11 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 315 (115.9 bits), Expect = 9.9e-38, Sum P(2) = 9.9e-38
 Identities = 68/144 (47%), Positives = 91/144 (63%)

Query:    11 TKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVG 70
             T+V+QV N++P A+ +QM+TLFG+LGK+++LRL+P   D  +PV SR+C+VKF D     
Sbjct:    31 TEVIQVTNVSPSASSEQMRTLFGFLGKIDELRLFP-PDDSPLPVSSRVCFVKFHDPDSAV 89

Query:    71 ISQHLTNTVFIDRALVVTPYNSGEIPDEQRALEIAAQQQG-----PNSGEPKLPAHVTNQ 125
             ++QHLTNTVF+DRAL+V PY  G IPDE +AL + A         P  G    P  +T Q
Sbjct:    90 VAQHLTNTVFVDRALIVVPYAEGVIPDETKALSLLAPANAVAGLLPGGGLLPTPNPLT-Q 148

Query:   126 IEGVPPNQV-ISTHDPVLVQHGLP 148
             I  VP   +   T DP L   GLP
Sbjct:   149 IGAVPLAALGAPTLDPALAALGLP 172

GO:0005634 "nucleus" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|Q05519 SRSF11 "Serine/arginine-rich splicing factor 11" [Homo sapiens (taxid:9606)]

 Score = 315 (115.9 bits), Expect = 1.0e-37, Sum P(2) = 1.0e-37
 Identities = 68/144 (47%), Positives = 91/144 (63%)

Query:    11 TKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVG 70
             T+V+QV N++P A+ +QM+TLFG+LGK+++LRL+P   D  +PV SR+C+VKF D     
Sbjct:    32 TEVIQVTNVSPSASSEQMRTLFGFLGKIDELRLFP-PDDSPLPVSSRVCFVKFHDPDSAV 90

Query:    71 ISQHLTNTVFIDRALVVTPYNSGEIPDEQRALEIAAQQQG-----PNSGEPKLPAHVTNQ 125
             ++QHLTNTVF+DRAL+V PY  G IPDE +AL + A         P  G    P  +T Q
Sbjct:    91 VAQHLTNTVFVDRALIVVPYAEGVIPDEAKALSLLAPANAVAGLLPGGGLLPTPNPLT-Q 149

Query:   126 IEGVPPNQV-ISTHDPVLVQHGLP 148
             I  VP   +   T DP L   GLP
Sbjct:   150 IGAVPLAALGAPTLDPALAALGLP 173

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0006397 "mRNA processing" evidence=TAS

GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006366 "transcription from RNA polymerase II promoter" evidence=TAS

GO:0006369 "termination of RNA polymerase II transcription" evidence=TAS

GO:0006406 "mRNA export from nucleus" evidence=TAS

GO:0008380 "RNA splicing" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0031124 "mRNA 3'-end processing" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

RGD|1559953 Srsf11 "serine/arginine-rich splicing factor 11" [Rattus norvegicus (taxid:10116)]

 Score = 310 (114.2 bits), Expect = 2.5e-37, Sum P(2) = 2.5e-37
 Identities = 67/144 (46%), Positives = 90/144 (62%)

Query:    11 TKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVG 70
             T+V+QV N++P A+ +QM+TLFG+LGK+++LRL+P   D  +PV SR+C+VKF D     
Sbjct:    25 TEVIQVTNVSPSASSEQMRTLFGFLGKIDELRLFP-PDDSPLPVSSRVCFVKFHDPDSAV 83

Query:    71 ISQHLTNTVFIDRALVVTPYNSGEIPDEQRALEIAAQQQG-----PNSGEPKLPAHVTNQ 125
             ++QHLTNTVF+DRAL+V PY  G IPDE +AL + A         P  G    P  +T Q
Sbjct:    84 VAQHLTNTVFVDRALIVVPYAEGVIPDETKALSLLAPANAVAGLLPGGGLLPTPNPLT-Q 142

Query:   126 IEGVPPNQV-ISTHDPVLVQHGLP 148
             I  VP   +     DP L   GLP
Sbjct:   143 IGAVPLAALGAPALDPALAALGLP 166

GO:0005634 "nucleus" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|F1NA16 Gga.54187 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
 Identities = 93/242 (38%), Positives = 138/242 (57%)

Query:    11 TKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVG 70
             T V+QV N++   T +QM+TLFG+LG +E+LRLYP   +  +   S++CY+KF +   VG
Sbjct:     4 TSVIQVTNLSLAVTSEQMRTLFGFLGDIEELRLYP-PDNAPLAFSSKVCYIKFREASSVG 62

Query:    71 ISQHLTNTVFIDRALVVTPYNSGEIPDEQRALEIAAQQQG-----PNSGEPKLPAHVTNQ 125
             ++QHLTNTVFIDRAL+V P   G+IPDE +AL + A         P +G   +P      
Sbjct:    63 VAQHLTNTVFIDRALIVVPCAEGKIPDEAKALSLLAPAPTMTSLMPGAGLLPIPTPTPLT 122

Query:   126 IEGVPPNQV----ISTHDPVLVQHG-LPQYPPLPITYDTKKIEEIRRTLVAINIE-ESVS 179
               GV    +     +  DP +   G +PQ PP+    D  KI+EIRRT+   N+  ++ +
Sbjct:   123 TLGVSLGTLGAIPAAALDPNITALGEIPQ-PPIMGNVDPSKIDEIRRTVYVGNLNSQTTT 181

Query:   180 PQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMF- 238
               +L++FF++VG V ++R    E    ++A VEF+DQ  V  AL  NG     + L+   
Sbjct:   182 ADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKFVN 241

Query:   239 HS 240
             HS
Sbjct:   242 HS 243

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	405
cd12259	76	cd12259, RRM_SRSF11_SREK1, RNA recognition motif i	5e-33
cd12260	85	cd12260, RRM2_SREK1, RNA recognition motif 2 in sp	3e-29
cd12518	80	cd12518, RRM_SRSF11, RNA recognition motif in seri	3e-27
cd12519	80	cd12519, RRM1_SREK1, RNA recognition motif 1 in sp	1e-23
cd12306	73	cd12306, RRM_II_PABPs, RNA recognition motif in ty	8e-10
cd00590	72	cd00590, RRM_SF, RNA recognition motif (RRM) super	8e-09
pfam14259	69	pfam14259, RRM_6, RNA recognition motif (a	1e-08
smart00360	73	smart00360, RRM, RNA recognition motif	2e-08
cd12225	77	cd12225, RRM1_2_CID8_like, RNA recognition motif 1	2e-08
pfam00076	70	pfam00076, RRM_1, RNA recognition motif	4e-08
cd12283	73	cd12283, RRM1_RBM39_like, RNA recognition motif 1	4e-07
cd12459	80	cd12459, RRM1_CID8_like, RNA recognition motif 1 i	5e-07
COG0724	306	COG0724, COG0724, RNA-binding proteins (RRM domain	2e-06
TIGR01622	457	TIGR01622, SF-CC1, splicing factor, CC1-like famil	2e-06
pfam13893	56	pfam13893, RRM_5, RNA recognition motif	6e-06
cd12398	75	cd12398, RRM_CSTF2_RNA15_like, RNA recognition mot	1e-05
cd12339	71	cd12339, RRM2_SRSF1_4_like, RNA recognition motif	1e-05
cd12298	78	cd12298, RRM3_Prp24, RNA recognition motif 3 in fu	1e-05
cd12450	77	cd12450, RRM1_NUCLs, RNA recognition motif 1 found	5e-05
cd12350	74	cd12350, RRM3_SHARP, RNA recognition motif 3 in SM	1e-04
cd12355	80	cd12355, RRM_RBM18, RNA recognition motif in eukar	1e-04
cd12391	72	cd12391, RRM1_SART3, RNA recognition motif 1 in sq	2e-04
cd12454	80	cd12454, RRM2_RIM4_like, RNA recognition motif 2 i	2e-04
cd12536	85	cd12536, RRM1_RBM39, RNA recognition motif 1 in ve	4e-04
cd12395	73	cd12395, RRM2_RBM34, RNA recognition motif 2 in RN	5e-04
cd12392	81	cd12392, RRM2_SART3, RNA recognition motif 2 in sq	8e-04
cd12399	78	cd12399, RRM_HP0827_like, RNA recognition motif in	0.001
cd12671	75	cd12671, RRM_CSTF2_CSTF2T, RNA recognition motif i	0.001

>gnl|CDD|240705 cd12259, RRM_SRSF11_SREK1, RNA recognition motif in serine/arginine-rich splicing factor 11 (SRSF11), splicing regulatory glutamine/lysine-rich protein 1 (SREK1) and similar proteins

 Score =  118 bits (298), Expect = 5e-33
 Identities = 48/77 (62%), Positives = 64/77 (83%), Gaps = 1/77 (1%)

Query: 13 VVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGIS 72
          VVQV N++PQAT +QM+TLFG+LGK+E+LRLYP   D+  PV S++C+VK+ D + VG++
Sbjct: 1  VVQVTNVSPQATEEQMRTLFGFLGKIEELRLYPSDDDL-APVLSKVCFVKYEDPEDVGVA 59

Query: 73 QHLTNTVFIDRALVVTP 89
           HLTNTVFIDRAL+V P
Sbjct: 60 LHLTNTVFIDRALIVVP 76

This subfamily corresponds to the RRM domain of SRSF11 (SRp54 or p54), SREK1 ( SFRS12 or SRrp86) and similar proteins, a group of proteins containing regions rich in serine-arginine dipeptides (SR protein family). These are involved in bridge-complex formation and splicing by mediating protein-protein interactions across either introns or exons. SR proteins have been identified as crucial regulators of alternative splicing. Different SR proteins display different substrate specificity, have distinct functions in alternative splicing of different pre-mRNAs, and can even negatively regulate splicing. All SR family members are characterized by the presence of one or two N-terminal RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and the C-terminal regions rich in serine and arginine dipeptides (SR domains). The RRM domain is responsible for RNA binding and specificity in both alternative and constitutive splicing. In contrast, SR domains are thought to be protein-protein interaction domains that are often interchangeable. . Length = 76

>gnl|CDD|240706 cd12260, RRM2_SREK1, RNA recognition motif 2 in splicing regulatory glutamine/lysine-rich protein 1 (SREK1) and similar proteins

 Score =  108 bits (272), Expect = 3e-29
 Identities = 36/85 (42%), Positives = 53/85 (62%)

Query: 163 EEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPA 222
           EEIRRT+   N++ + +  +L++FF + G V Y+R    E    +YA VEF++Q  VI A
Sbjct: 1   EEIRRTIYVGNLDPTTTADQLLEFFSQAGEVKYVRMAGDETQPTRYAFVEFAEQTSVINA 60

Query: 223 LKLNGTNLKGKTLQMFHSTQSIQKP 247
           LKLNG    G+ L++ HS  +I KP
Sbjct: 61  LKLNGAMFGGRPLKVNHSNNAIVKP 85

This subfamily corresponds to the RRM2 of SREK1, also termed serine/arginine-rich-splicing regulatory protein 86-kDa (SRrp86), or splicing factor arginine/serine-rich 12 (SFRS12), or splicing regulatory protein 508 amino acid (SRrp508). SREK1 belongs to a family of proteins containing regions rich in serine-arginine dipeptides (SR proteins family), which is involved in bridge-complex formation and splicing by mediating protein-protein interactions across either introns or exons. It is a unique SR family member and it may play a crucial role in determining tissue specific patterns of alternative splicing. SREK1 can alter splice site selection by both positively and negatively modulating the activity of other SR proteins. For instance, SREK1 can activate SRp20 and repress SC35 in a dose-dependent manner both in vitro and in vivo. In addition, SREK1 contains two (some contain only one) RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and two serine-arginine (SR)-rich domains (SR domains) separated by an unusual glutamic acid-lysine (EK) rich region. The RRM and SR domains are highly conserved among other members of the SR superfamily. However, the EK domain is unique to SREK1. It plays a modulatory role controlling SR domain function by involvement in the inhibition of both constitutive and alternative splicing and in the selection of splice-site. . Length = 85

>gnl|CDD|240962 cd12518, RRM_SRSF11, RNA recognition motif in serine/arginine-rich splicing factor 11 (SRSF11) and similar proteins

 Score =  102 bits (256), Expect = 3e-27
 Identities = 46/81 (56%), Positives = 63/81 (77%), Gaps = 1/81 (1%)

Query: 13 VVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGIS 72
          V+QV N++P A+ +QM+TLFG+LGK+++LRL+P   D  +PV SR+C+VKF D     +S
Sbjct: 1  VIQVTNVSPSASSEQMRTLFGFLGKIDELRLFP-PDDSPLPVTSRVCFVKFHDPDSAVVS 59

Query: 73 QHLTNTVFIDRALVVTPYNSG 93
          QHLTNTVF+DRAL+V PY  G
Sbjct: 60 QHLTNTVFVDRALIVVPYAEG 80

This subgroup corresponds to the RRM of SRSF11, also termed arginine-rich 54 kDa nuclear protein (SRp54 or p54), which belongs to a family of proteins containing regions rich in serine-arginine dipeptides (SR proteins family). It is involved in bridge-complex formation and splicing by mediating protein-protein interactions across either introns or exons. SRSF11 has been identified as a tau exon 10 splicing repressor. It interacts with a purine-rich element in exon 10, and suppresses exon 10 inclusion by antagonizing Tra2beta, an SR-domain-containing protein that enhances exon 10 inclusion. SRSF11 is a unique SR family member and may regulate the alternative splicing in a tissue- and substrate-dependent manner. It can directly interact with the U2 auxiliary factor 65-kDa subunit (U2AF65), a protein associated with the 3' splice site. In addition, unlike the typical SR proteins, SRSF11 associates with other SR proteins but not with the U1 small nuclear ribonucleoprotein U1-70K or the U2 auxiliary factor 35-kDa subunit (U2AF35). SREK1 has unique properties in regulating alternative splicing of different pre-mRNAs; it promotes the use of the distal 5' splice site in E1A pre-mRNA alternative splicing. It also inhibits cryptic splice site selection on the beta-globin pre-mRNA containing competing 5' splice sites. SREK1 contains an RNA recognition motif (RRM), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and one serine-arginine (SR)-rich domains (SR domains). . Length = 80

>gnl|CDD|240963 cd12519, RRM1_SREK1, RNA recognition motif 1 in splicing regulatory glutamine/lysine-rich protein 1 (SREK1) and similar proteins

 Score = 93.5 bits (232), Expect = 1e-23
 Identities = 42/81 (51%), Positives = 59/81 (72%), Gaps = 1/81 (1%)

Query: 13 VVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGIS 72
          V+QV N++   T DQM+TLFG+LG +E+LRLYP   +  +   S++CY+K+ +   VG++
Sbjct: 1  VIQVTNLSAAVTSDQMRTLFGFLGDIEELRLYP-PDNAPLAFSSKVCYIKYREPSSVGVA 59

Query: 73 QHLTNTVFIDRALVVTPYNSG 93
          QHLTNTVFIDRAL+V P   G
Sbjct: 60 QHLTNTVFIDRALIVVPCAEG 80

This subgroup corresponds to the RRM1 of SREK1, also termed serine/arginine-rich-splicing regulatory protein 86-kDa (SRrp86), or splicing factor arginine/serine-rich 12 (SFRS12), or splicing regulatory protein 508 amino acid (SRrp508). SREK1 belongs to a family of proteins containing regions rich in serine-arginine dipeptides (SR proteins family), and is involved in bridge-complex formation and splicing by mediating protein-protein interactions across either introns or exons. It is a unique SR family member and may play a crucial role in determining tissue specific patterns of alternative splicing. SREK1 can alter splice site selection by both positively and negatively modulating the activity of other SR proteins. For instance, SREK1 can activate SRp20 and repress SC35 in a dose-dependent manner both in vitro and in vivo. In addition, SREK1 generally contains two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and two serine-arginine (SR)-rich domains (SR domains) separated by an unusual glutamic acid-lysine (EK) rich region. The RRM and SR domains are highly conserved among other members of the SR superfamily. However, the EK domain is unique to SREK1; plays a modulatory role controlling SR domain function by involvement in the inhibition of both constitutive and alternative splicing and in the selection of splice-site. . Length = 80

>gnl|CDD|240752 cd12306, RRM_II_PABPs, RNA recognition motif in type II polyadenylate-binding proteins

 Score = 54.6 bits (132), Expect = 8e-10
 Identities = 21/68 (30%), Positives = 39/68 (57%), Gaps = 2/68 (2%)

Query: 173 NIEESVSPQELVDFFQKVGTVNYIRF-CTRENDTNK-YALVEFSDQACVIPALKLNGTNL 230
           N++   +P+EL + F+  GT+N I   C +     K +A +EF D++ V  AL LN +  
Sbjct: 6   NVDYGTTPEELQEHFKSCGTINRITILCDKFTGQPKGFAYIEFLDKSSVENALLLNESEF 65

Query: 231 KGKTLQMF 238
           +G+ +++ 
Sbjct: 66  RGRQIKVT 73

This subfamily corresponds to the RRM of type II polyadenylate-binding proteins (PABPs), including polyadenylate-binding protein 2 (PABP-2 or PABPN1), embryonic polyadenylate-binding protein 2 (ePABP-2 or PABPN1L) and similar proteins. PABPs are highly conserved proteins that bind to the poly(A) tail present at the 3' ends of most eukaryotic mRNAs. They have been implicated in the regulation of poly(A) tail length during the polyadenylation reaction, translation initiation, mRNA stabilization by influencing the rate of deadenylation and inhibition of mRNA decapping. ePABP-2 is predominantly located in the cytoplasm and PABP-2 is located in the nucleus. In contrast to the type I PABPs containing four copies of RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), the type II PABPs contains a single highly-conserved RRM. This subfamily also includes Saccharomyces cerevisiae RBP29 (SGN1, YIR001C) gene encoding cytoplasmic mRNA-binding protein Rbp29 that binds preferentially to poly(A). Although not essential for cell viability, Rbp29 plays a role in modulating the expression of cytoplasmic mRNA. Like other type II PABPs, Rbp29 contains one RRM only. . Length = 73

>gnl|CDD|240668 cd00590, RRM_SF, RNA recognition motif (RRM) superfamily

 Score = 51.5 bits (124), Expect = 8e-09
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 2/66 (3%)

Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNK-YALVEFSDQACVIPALK-LNGTNL 230
           N+    + ++L + F K G +  +R    ++  +K +A VEF        AL+ LNG  L
Sbjct: 5   NLPPDTTEEDLRELFSKFGEIESVRIVRDKDGKSKGFAFVEFESPEDAEKALEALNGKEL 64

Query: 231 KGKTLQ 236
            G+ L+
Sbjct: 65  DGRKLK 70

RRM, also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs). Length = 72

>gnl|CDD|222631 pfam14259, RRM_6, RNA recognition motif (a

 Score = 51.0 bits (123), Expect = 1e-08
 Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 1/65 (1%)

Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLK 231
           N+  SV+ ++L +FF   G V  +R    ++    +A VEF+       ALK LNG  L 
Sbjct: 5   NLPPSVTEEDLREFFSPYGKVEGVRLVRNKDRPRGFAFVEFASPEDAEAALKKLNGLVLD 64

Query: 232 GKTLQ 236
           G+TL+
Sbjct: 65  GRTLR 69

k.a. RRM, RBD, or RNP domain). Length = 69

>gnl|CDD|214636 smart00360, RRM, RNA recognition motif

 Score = 50.3 bits (121), Expect = 2e-08
 Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 5/67 (7%)

Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNK---YALVEFSDQACVIPALK-LNGT 228
           N+    + +EL + F K G V  +R   R+ +T K   +A VEF  +     AL+ LNG 
Sbjct: 6   NLPPDTTEEELRELFSKFGKVESVRLV-RDKETGKSKGFAFVEFESEEDAEKALEALNGK 64

Query: 229 NLKGKTL 235
            L G+ L
Sbjct: 65  ELDGRPL 71

Length = 73

>gnl|CDD|240671 cd12225, RRM1_2_CID8_like, RNA recognition motif 1 and 2 (RRM1, RRM2) in Arabidopsis thaliana CTC-interacting domain protein CID8, CID9, CID10, CID11, CID12, CID 13 and similar proteins

 Score = 50.4 bits (121), Expect = 2e-08
 Identities = 26/74 (35%), Positives = 40/74 (54%)

Query: 167 RTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALKLN 226
           RT+    I+ S+S  +L +FF   G V  +R C     + ++A VEF+D    + AL L+
Sbjct: 1   RTIHVGGIDGSLSEDDLKEFFSNCGEVTRVRLCGDRQHSARFAFVEFADAESALSALNLS 60

Query: 227 GTNLKGKTLQMFHS 240
           GT L G  L++  S
Sbjct: 61  GTLLGGHPLRVSPS 74

This subgroup corresponds to the RRM domains found in A. thaliana CID8, CID9, CID10, CID11, CID12, CID 13 and mainly their plant homologs. These highly related RNA-binding proteins contain an N-terminal PAM2 domain (PABP-interacting motif 2), two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a basic region that resembles a bipartite nuclear localization signal. The biological role of this family remains unclear. Length = 77

>gnl|CDD|215696 pfam00076, RRM_1, RNA recognition motif

 Score = 49.5 bits (119), Expect = 4e-08
 Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 2/65 (3%)

Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNK-YALVEFSDQACVIPALK-LNGTNL 230
           N+    + ++L D F K G +  IR    E   +K +A VEF D+     AL+ LNG  L
Sbjct: 5   NLPPDTTEEDLKDLFSKFGPIESIRIVRDETGRSKGFAFVEFEDEEDAEKALEALNGKEL 64

Query: 231 KGKTL 235
            G+ L
Sbjct: 65  GGREL 69

(a.k.a. RRM, RBD, or RNP domain). The RRM motif is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins have an N terminal rrm which is included in the seed. There is a second region towards the C terminus that has some features characteristic of a rrm but does not appear to have the important structural core of a rrm. The LA proteins are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disease. Length = 70

>gnl|CDD|240729 cd12283, RRM1_RBM39_like, RNA recognition motif 1 in vertebrate RNA-binding protein 39 (RBM39) and similar proteins

 Score = 46.8 bits (112), Expect = 4e-07
 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 4/68 (5%)

Query: 168 TLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNK---YALVEFSDQACVIPALK 224
           T+  + +   V  ++L +FF K G V  +R   R+ ++ +    A VEF D+  V  AL 
Sbjct: 1   TVFVMQLSLKVRERDLYEFFSKAGKVRDVR-IIRDRNSRRSKGVAYVEFYDEESVPLALG 59

Query: 225 LNGTNLKG 232
           L G  L G
Sbjct: 60  LTGQRLLG 67

This subfamily corresponds to the RRM1 of RNA-binding protein 39 (RBM39), RNA-binding protein 23 (RBM23) and similar proteins. RBM39 (also termed HCC1) is a nuclear autoantigen that contains an N-terminal arginine/serine rich (RS) motif and three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). An octapeptide sequence called the RS-ERK motif is repeated six times in the RS region of RBM39. Although the cellular function of RBM23 remains unclear, it shows high sequence homology to RBM39 and contains two RRMs. It may possibly function as a pre-mRNA splicing factor. . Length = 73

>gnl|CDD|240905 cd12459, RRM1_CID8_like, RNA recognition motif 1 in Arabidopsis thaliana CTC-interacting domain protein CID8, CID9, CID10, CID11, CID12, CID 13 and similar proteins

 Score = 47.0 bits (112), Expect = 5e-07
 Identities = 25/80 (31%), Positives = 42/80 (52%)

Query: 165 IRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK 224
           IRRT+   +I++ V+ ++L   F   G V   R C   N   ++A +EF+D+     AL 
Sbjct: 1   IRRTVYVSDIDQQVTEEQLAALFSNCGQVVDCRVCGDPNSVLRFAFIEFTDEEGARAALS 60

Query: 225 LNGTNLKGKTLQMFHSTQSI 244
           L+GT L    +++  S  +I
Sbjct: 61  LSGTMLGFYPVRVLPSKTAI 80

This subgroup corresponds to the RRM1 domains found in A. thaliana CID8, CID9, CID10, CID11, CID12, CID 13 and mainly their plant homologs. These highly related RNA-binding proteins contain an N-terminal PAM2 domain (PABP-interacting motif 2), two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a basic region that resembles a bipartite nuclear localization signal. The biological role of this family remains unclear. Length = 80

>gnl|CDD|223796 COG0724, COG0724, RNA-binding proteins (RRM domain) [General function prediction only]

 Score = 48.8 bits (115), Expect = 2e-06
 Identities = 33/184 (17%), Positives = 73/184 (39%), Gaps = 9/184 (4%)

Query: 82  DRALVVTPYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPV 141
           +  L        E   ++  LE+ +++       P     ++++ +     ++   +D  
Sbjct: 28  ELLLKEEYGGLEEANSKELNLEVNSRKIESEISPPSKKRLLSSERKEENEREMEEQNDGE 87

Query: 142 LVQHGLPQYPPLPITYDTKKIEEIR---RTLVAINIEESVSPQELVDFFQKVGTVNYIRF 198
                  +      +   K  ++ +    TL   N+   V+ ++L + F+K G V  +R 
Sbjct: 88  RGYTKEFEEELFRSSESPKSRQKSKEENNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRL 147

Query: 199 CTRENDTNK---YALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQSIQKPEAKSNEA 254
             R+ +T K   +A VEF  +     A++ LNG  L+G+ L+     Q   +P ++ +  
Sbjct: 148 V-RDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLR-VQKAQPASQPRSELSNN 205

Query: 255 AQRE 258
               
Sbjct: 206 LDAS 209

Length = 306

>gnl|CDD|233496 TIGR01622, SF-CC1, splicing factor, CC1-like family

 Score = 49.1 bits (117), Expect = 2e-06
 Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 15/108 (13%)

Query: 151 PPLPITYDTKKIEEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNK--- 207
              P+T      E   RT+  + +      ++L +FF KVG V  ++ C ++ ++ +   
Sbjct: 78  TKEPLTEA----ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQ-CIKDRNSRRSKG 132

Query: 208 YALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQSIQKPEAKSNEAA 255
            A VEF D   VI AL L G  L G+ +        +Q  +A+ N AA
Sbjct: 133 VAYVEFYDVESVIKALALTGQMLLGRPII-------VQSSQAEKNRAA 173

This model represents a subfamily of RNA splicing factors including the Pad-1 protein (N. crassa), CAPER (M. musculus) and CC1.3 (H.sapiens). These proteins are characterized by an N-terminal arginine-rich, low complexity domain followed by three (or in the case of 4 H. sapiens paralogs, two) RNA recognition domains (rrm: pfam00706). These splicing factors are closely related to the U2AF splicing factor family (TIGR01642). A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the seed. Length = 457

>gnl|CDD|206064 pfam13893, RRM_5, RNA recognition motif

 Score = 42.9 bits (102), Expect = 6e-06
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 4/59 (6%)

Query: 183 LVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHS 240
           L   F   G V  I+          +A VEFS +     A++ LNG    G+ L++ +S
Sbjct: 1   LYKLFSPFGNVEKIKLL---KKKPGFAFVEFSTEEAAEKAVQYLNGVLFGGRPLRVDYS 56

(a.k.a. RRM, RBD, or RNP domain). The RRM motif is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. Length = 56

>gnl|CDD|240844 cd12398, RRM_CSTF2_RNA15_like, RNA recognition motif in cleavage stimulation factor subunit 2 (CSTF2), yeast ortholog mRNA 3'-end-processing protein RNA15 and similar proteins

 Score = 43.0 bits (102), Expect = 1e-05
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 5/72 (6%)

Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNK---YALVEFSDQACVIPALK-LNGT 228
           NI    + ++L++ F +VG V   R  T + DT K   Y   EF D      A++ LNG 
Sbjct: 5   NIPYDATEEQLIEIFSEVGPVVSFRLVT-DRDTGKPKGYGFCEFEDIETAASAIRNLNGY 63

Query: 229 NLKGKTLQMFHS 240
              G+ L++  +
Sbjct: 64  EFNGRALRVDFA 75

This subfamily corresponds to the RRM domain of CSTF2, its tau variant and eukaryotic homologs. CSTF2, also termed cleavage stimulation factor 64 kDa subunit (CstF64), is the vertebrate conterpart of yeast mRNA 3'-end-processing protein RNA15. It is expressed in all somatic tissues and is one of three cleavage stimulatory factor (CstF) subunits required for polyadenylation. CstF64 contains an N-terminal RNA recognition motif (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), a CstF77-binding domain, a repeated MEARA helical region and a conserved C-terminal domain reported to bind the transcription factor PC-4. During polyadenylation, CstF interacts with the pre-mRNA through the RRM of CstF64 at U- or GU-rich sequences within 10 to 30 nucleotides downstream of the cleavage site. CSTF2T, also termed tauCstF64, is a paralog of the X-linked cleavage stimulation factor CstF64 protein that supports polyadenylation in most somatic cells. It is expressed during meiosis and subsequent haploid differentiation in a more limited set of tissues and cell types, largely in meiotic and postmeiotic male germ cells, and to a lesser extent in brain. The loss of CSTF2T will cause male infertility, as it is necessary for spermatogenesis and fertilization. Moreover, CSTF2T is required for expression of genes involved in morphological differentiation of spermatids, as well as for genes having products that function during interaction of motile spermatozoa with eggs. It promotes germ cell-specific patterns of polyadenylation by using its RRM to bind to different sequence elements downstream of polyadenylation sites than does CstF64. The family also includes yeast ortholog mRNA 3'-end-processing protein RNA15 and similar proteins. RNA15 is a core subunit of cleavage factor IA (CFIA), an essential transcriptional 3'-end processing factor from Saccharomyces cerevisiae. RNA recognition by CFIA is mediated by an N-terminal RRM, which is contained in the RNA15 subunit of the complex. The RRM of RNA15 has a strong preference for GU-rich RNAs, mediated by a binding pocket that is entirely conserved in both yeast and vertebrate RNA15 orthologs. Length = 75

>gnl|CDD|240785 cd12339, RRM2_SRSF1_4_like, RNA recognition motif 2 in serine/arginine-rich splicing factor SRSF1, SRSF4 and similar proteins

 Score = 42.6 bits (101), Expect = 1e-05
 Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 4/65 (6%)

Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPAL-KLNGTNLK 231
            + E  S Q+L DF ++ G V Y      + D     +VEF+ Q  +  AL KL+GT  +
Sbjct: 7   GLPEGASWQDLKDFGRQAGDVTY---ADVDRDQEGEGVVEFTSQEDMERALRKLDGTEFR 63

Query: 232 GKTLQ 236
           G+ ++
Sbjct: 64  GRRVR 68

This subfamily corresponds to the RRM2 of several serine/arginine (SR) proteins that have been classified into two subgroups. The first subgroup consists of serine/arginine-rich splicing factor 4 (SRSF4 or SRp75 or SFRS4), serine/arginine-rich splicing factor 5 (SRSF5 or SRp40 or SFRS5 or HRS) and serine/arginine-rich splicing factor 6 (SRSF6 or SRp55). The second subgroup is composed of serine/arginine-rich splicing factor 1 (SRSF1 or ASF-1), serine/arginine-rich splicing factor 9 (SRSF9 or SRp30C) and plant pre-mRNA-splicing factor SF2 (SR1). These SR proteins are mainly involved in regulating constitutive and alternative pre-mRNA splicing. They also have been implicated in transcription, genomic stability, mRNA export and translation. All SR proteins in this family, except SRSF5, undergo nucleocytoplasmic shuttling, suggesting their widespread roles in gene expression. These SR proteins share a common domain architecture comprising two N-terminal RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), followed by a C-terminal RS domains rich in serine-arginine dipeptides. Both domains can directly contact with RNA. The RRMs appear to determine the binding specificity and the SR domain also mediates protein-protein interactions. In addition, this subfamily includes the yeast nucleolar protein 3 (Npl3p), also termed mitochondrial targeting suppressor 1 protein, or nuclear polyadenylated RNA-binding protein 1. It is a major yeast RNA-binding protein that competes with 3'-end processing factors, such as Rna15, for binding to the nascent RNA, protecting the transcript from premature termination and coordinating transcription termination and the packaging of the fully processed transcript for export. It specifically recognizes a class of G/U-rich RNAs. Npl3p is a multi-domain protein with two RRMs, separated by a short linker and a C-terminal domain rich in glycine, arginine and serine residues. . Length = 71

>gnl|CDD|240744 cd12298, RRM3_Prp24, RNA recognition motif 3 in fungal pre-messenger RNA splicing protein 24 (Prp24) and similar proteins

 Score = 42.6 bits (101), Expect = 1e-05
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 5/68 (7%)

Query: 173 NIEESVSPQELVDFFQKVGTVNYIRF-CTRENDTNK----YALVEFSDQACVIPALKLNG 227
           N++  +   +L   F K G V  IR    ++    +    +A V F D +    AL+LNG
Sbjct: 7   NLDFKLDEDDLRGIFSKFGEVESIRIPKKQDEKQGRLNNGFAFVTFKDASSAENALQLNG 66

Query: 228 TNLKGKTL 235
           T L G+ +
Sbjct: 67  TELGGRKI 74

This subfamily corresponds to the RRM3 of Prp24, also termed U4/U6 snRNA-associated-splicing factor PRP24 (U4/U6 snRNP), an RNA-binding protein with four well conserved RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). It facilitates U6 RNA base-pairing with U4 RNA during spliceosome assembly. Prp24 specifically binds free U6 RNA primarily with RRMs 1 and 2 and facilitates pairing of U6 RNA bases with U4 RNA bases. Additionally, it may also be involved in dissociation of the U4/U6 complex during spliceosome activation. . Length = 78

>gnl|CDD|240896 cd12450, RRM1_NUCLs, RNA recognition motif 1 found in nucleolin-like proteins mainly from plants

 Score = 40.8 bits (96), Expect = 5e-05
 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 1/69 (1%)

Query: 168 TLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNK-YALVEFSDQACVIPALKLN 226
           TL   N+  S    +L +FF++ G V  +R    ++  +K +  VEF+ +     AL+ +
Sbjct: 1   TLFVGNLSWSAEQDDLEEFFKECGEVVDVRIAQDDDGRSKGFGHVEFATEEGAQKALEKS 60

Query: 227 GTNLKGKTL 235
           G  L G+ +
Sbjct: 61  GEELLGREI 69

This subfamily corresponds to the RRM1 of a group of plant nucleolin-like proteins, including nucleolin 1 (also termed protein nucleolin like 1) and nucleolin 2 (also termed protein nucleolin like 2, or protein parallel like 1). They play roles in the regulation of ribosome synthesis and in the growth and development of plants. Like yeast nucleolin, nucleolin-like proteins possess two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). . Length = 77

>gnl|CDD|240796 cd12350, RRM3_SHARP, RNA recognition motif 3 in SMART/HDAC1-associated repressor protein (SHARP) and similar proteins

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 18/72 (25%), Positives = 40/72 (55%), Gaps = 2/72 (2%)

Query: 167 RTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPAL-KL 225
           RTL   N+E++ +  +L + F++ G +  I    ++     YA ++++D A V+ A+ K+
Sbjct: 3   RTLFIGNLEKTTTYSDLREAFERFGEIIDIDI-KKQGGNPAYAFIQYADIASVVKAMRKM 61

Query: 226 NGTNLKGKTLQM 237
           +G  L    +++
Sbjct: 62  DGEYLGNNRVKL 73

This subfamily corresponds to the RRM3 of SHARP, also termed Msx2-interacting protein (MINT), or SPEN homolog, an estrogen-inducible transcriptional repressor that interacts directly with the nuclear receptor corepressor SMRT, histone deacetylases (HDACs) and components of the NuRD complex. SHARP recruits HDAC activity and binds to the steroid receptor RNA coactivator SRA through four conserved N-terminal RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), further suppressing SRA-potentiated steroid receptor transcription activity. Thus, SHARP has the capacity to modulate both liganded and nonliganded nuclear receptors. SHARP also has been identified as a component of transcriptional repression complexes in Notch/RBP-Jkappa signaling pathways. In addition to the N-terminal RRMs, SHARP possesses a C-terminal SPOC domain (Spen paralog and ortholog C-terminal domain), which is highly conserved among Spen proteins. . Length = 74

>gnl|CDD|240801 cd12355, RRM_RBM18, RNA recognition motif in eukaryotic RNA-binding protein 18 and similar proteins

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 18/72 (25%), Positives = 27/72 (37%), Gaps = 10/72 (13%)

Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNK-------YALVEFSDQACVIPALK- 224
           N++  ++   L+  F K G +    F    + +         Y  V F  +     ALK 
Sbjct: 6   NLDSRLTEFHLLKLFSKYGKIKKFDF--LFHKSGPLKGQPRGYCFVTFETKEEAEKALKS 63

Query: 225 LNGTNLKGKTLQ 236
           LNG    GK L 
Sbjct: 64  LNGKTALGKKLV 75

This subfamily corresponds to the RRM of RBM18, a putative RNA-binding protein containing a well-conserved RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain). The biological role of RBM18 remains unclear. . Length = 80

>gnl|CDD|240837 cd12391, RRM1_SART3, RNA recognition motif 1 in squamous cell carcinoma antigen recognized by T-cells 3 (SART3) and similar proteins

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 3/69 (4%)

Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNK-YALVEFSDQACVIPALKLNGTNLK 231
           N++ SV   EL   F K G +  +R        +K YA VEF ++  V  ALKL+   +K
Sbjct: 6   NLDYSVPEDELRKLFSKCGEITDVRLVKNYKGKSKGYAYVEFENEESVQEALKLDRELIK 65

Query: 232 GKTLQMFHS 240
           G+   MF S
Sbjct: 66  GRP--MFVS 72

This subfamily corresponds to the RRM1 of SART3, also termed Tat-interacting protein of 110 kDa (Tip110), an RNA-binding protein expressed in the nucleus of the majority of proliferating cells, including normal cells and malignant cells, but not in normal tissues except for the testes and fetal liver. It is involved in the regulation of mRNA splicing probably via its complex formation with RNA-binding protein with a serine-rich domain (RNPS1), a pre-mRNA-splicing factor. SART3 has also been identified as a nuclear Tat-interacting protein that regulates Tat transactivation activity through direct interaction and functions as an important cellular factor for HIV-1 gene expression and viral replication. In addition, SART3 is required for U6 snRNP targeting to Cajal bodies. It binds specifically and directly to the U6 snRNA, interacts transiently with the U6 and U4/U6 snRNPs, and promotes the reassembly of U4/U6 snRNPs after splicing in vitro. SART3 contains an N-terminal half-a-tetratricopeptide repeat (HAT)-rich domain, a nuclearlocalization signal (NLS) domain, and two C-terminal RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). . Length = 72

>gnl|CDD|240900 cd12454, RRM2_RIM4_like, RNA recognition motif 2 in yeast meiotic activator RIM4 and similar proteins

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 1/71 (1%)

Query: 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK- 224
           + ++    +   V+ +EL + F + G +  +    R N TN +A ++F  +     A++ 
Sbjct: 3   KYSIFVGQLSPDVTKEELNERFSRHGKILEVNLIKRANHTNAFAFIKFEREQAAARAVES 62

Query: 225 LNGTNLKGKTL 235
            N + LK KT+
Sbjct: 63  ENHSMLKNKTM 73

This subfamily corresponds to the RRM2 of RIM4, also termed regulator of IME2 protein 4, a putative RNA binding protein that is expressed at elevated levels early in meiosis. It functions as a meiotic activator required for both the IME1- and IME2-dependent pathways of meiotic gene expression, as well as early events of meiosis, such as meiotic division and recombination, in Saccharomyces cerevisiae. RIM4 contains two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). The family also includes a putative RNA-binding protein termed multicopy suppressor of sporulation protein Msa1. It is a putative RNA-binding protein encoded by a novel gene, msa1, from the fission yeast Schizosaccharomyces pombe. Msa1 may be involved in the inhibition of sexual differentiation by controlling the expression of Ste11-regulated genes, possibly through the pheromone-signaling pathway. Like RIM4, Msa1 also contains two RRMs, both of which are essential for the function of Msa1. . Length = 80

>gnl|CDD|240980 cd12536, RRM1_RBM39, RNA recognition motif 1 in vertebrate RNA-binding protein 39 (RBM39)

 Score = 38.9 bits (90), Expect = 4e-04
 Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 9/91 (9%)

Query: 167 RTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTREND--TNKYALVEFSDQACVIPALK 224
           RT+  + +   + P++L +FF  VG V  +R  +  N   +   A VEF D + V  A+ 
Sbjct: 2   RTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIG 61

Query: 225 LNGTNLKGKTLQMFHSTQSIQKPEAKSNEAA 255
           L G  + G  +        +Q  +A+ N AA
Sbjct: 62  LTGQRVLGVPI-------IVQASQAEKNRAA 85

This subgroup corresponds to the RRM1 of RBM39, also termed hepatocellular carcinoma protein 1, or RNA-binding region-containing protein 2, or splicing factor HCC1, a nuclear autoantigen that contains an N-terminal arginine/serine rich (RS) motif and three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). An octapeptide sequence called the RS-ERK motif is repeated six times in the RS region of RBM39. Based on the specific domain composition, RBM39 has been classified into a family of non-snRNP (small nuclear ribonucleoprotein) splicing factors that are usually not complexed to snRNAs. . Length = 85

>gnl|CDD|240841 cd12395, RRM2_RBM34, RNA recognition motif 2 in RNA-binding protein 34 (RBM34) and similar proteins

 Score = 37.9 bits (89), Expect = 5e-04
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 4/66 (6%)

Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNK---YALVEFSDQACVIPALKLNGTN 229
           N+   +  +EL   F+  G V  +R   R+  T     +  V F  +  V  ALKLNG  
Sbjct: 6   NLPFDIEEEELRKHFEDCGDVEAVRI-VRDRKTGIGKGFGYVLFKTKDSVALALKLNGIK 64

Query: 230 LKGKTL 235
           LKG+ +
Sbjct: 65  LKGRKI 70

This subfamily corresponds to the RRM2 of RBM34, a putative RNA-binding protein containing two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). Although the function of RBM34 remains unclear currently, its RRM domains may participate in mRNA processing. RBM34 may act as an mRNA processing-related protein. . Length = 73

>gnl|CDD|240838 cd12392, RRM2_SART3, RNA recognition motif 2 in squamous cell carcinoma antigen recognized by T-cells 3 (SART3) and similar proteins

 Score = 37.8 bits (88), Expect = 8e-04
 Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 2/66 (3%)

Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNK-YALVEFSDQACVIPA-LKLNGTNL 230
            +  SV+ +EL   F+K G V  +R  T  +   K  A VE+ +++    A LK++GT +
Sbjct: 9   GLPFSVTKEELEKLFKKHGVVKSVRLVTNRSGKPKGLAYVEYENESSASQAVLKMDGTEI 68

Query: 231 KGKTLQ 236
           K KT+ 
Sbjct: 69  KEKTIS 74

This subfamily corresponds to the RRM2 of SART3, also termed Tat-interacting protein of 110 kDa (Tip110), is an RNA-binding protein expressed in the nucleus of the majority of proliferating cells, including normal cells and malignant cells, but not in normal tissues except for the testes and fetal liver. It is involved in the regulation of mRNA splicing probably via its complex formation with RNA-binding protein with a serine-rich domain (RNPS1), a pre-mRNA-splicing factor. SART3 has also been identified as a nuclear Tat-interacting protein that regulates Tat transactivation activity through direct interaction and functions as an important cellular factor for HIV-1 gene expression and viral replication. In addition, SART3 is required for U6 snRNP targeting to Cajal bodies. It binds specifically and directly to the U6 snRNA, interacts transiently with the U6 and U4/U6 snRNPs, and promotes the reassembly of U4/U6 snRNPs after splicing in vitro. SART3 contains an N-terminal half-a-tetratricopeptide repeat (HAT)-rich domain, a nuclearlocalization signal (NLS) domain, and two C-terminal RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). . Length = 81

>gnl|CDD|240845 cd12399, RRM_HP0827_like, RNA recognition motif in Helicobacter pylori HP0827 protein and similar proteins

 Score = 37.2 bits (87), Expect = 0.001
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 3/66 (4%)

Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCT-RENDTNK-YALVEFSDQACVIPAL-KLNGTN 229
           N+  +V+ ++L D F + G V   R  T RE   ++ +  VE         A+ KLNGT+
Sbjct: 6   NLPYNVTEEDLKDLFGQFGEVTSARVITDRETGRSRGFGFVEMETAEEANAAIEKLNGTD 65

Query: 230 LKGKTL 235
             G+TL
Sbjct: 66  FGGRTL 71

This subfamily corresponds to the RRM of H. pylori HP0827, a putative ssDNA-binding protein 12rnp2 precursor, containing one RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain). The ssDNA binding may be important in activation of HP0827. . Length = 78

>gnl|CDD|241115 cd12671, RRM_CSTF2_CSTF2T, RNA recognition motif in cleavage stimulation factor subunit 2 (CSTF2), cleavage stimulation factor subunit 2 tau variant (CSTF2T) and similar proteins

 Score = 36.7 bits (85), Expect = 0.001
 Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 3/68 (4%)

Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCT-RENDTNK-YALVEFSDQACVIPALK-LNGTN 229
           NI    + ++L D F +VG V   R    RE    K Y   E+ DQ   + A++ LNG  
Sbjct: 5   NIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYKDQETALSAMRNLNGYE 64

Query: 230 LKGKTLQM 237
           L G+ L++
Sbjct: 65  LNGRQLRV 72

This subgroup corresponds to the RRM domain of CSTF2, its tau variant and eukaryotic homologs. CSTF2, also termed cleavage stimulation factor 64 kDa subunit (CstF64), is the vertebrate conterpart of yeast mRNA 3'-end-processing protein RNA15. It is expressed in all somatic tissues and is one of three cleavage stimulatory factor (CstF) subunits required for polyadenylation. CstF64 contains an N-terminal RNA recognition motif (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), a CstF77-binding domain, a repeated MEARA helical region and a conserved C-terminal domain reported to bind the transcription factor PC-4. During polyadenylation, CstF interacts with the pre-mRNA through the RRM of CstF64 at U- or GU-rich sequences within 10 to 30 nucleotides downstream of the cleavage site. CSTF2T, also termed tauCstF64, is a paralog of the X-linked cleavage stimulation factor CstF64 protein that supports polyadenylation in most somatic cells. It is expressed during meiosis and subsequent haploid differentiation in a more limited set of tissues and cell types, largely in meiotic and postmeiotic male germ cells, and to a lesser extent in brain. The loss of CSTF2T will cause male infertility, as it is necessary for spermatogenesis and fertilization. Moreover, CSTF2T is required for expression of genes involved in morphological differentiation of spermatids, as well as for genes having products that function during interaction of motile spermatozoa with eggs. It promotes germ cell-specific patterns of polyadenylation by using its RRM to bind to different sequence elements downstream of polyadenylation sites than does CstF64. . Length = 75

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	405
TIGR01661	352	ELAV_HUD_SF ELAV/HuD family splicing factor. These	99.96
TIGR01659	346	sex-lethal sex-lethal family splicing factor. This	99.95
TIGR01628	562	PABP-1234 polyadenylate binding protein, human typ	99.95
TIGR01622	457	SF-CC1 splicing factor, CC1-like family. A homolog	99.95
TIGR01645	612	half-pint poly-U binding splicing factor, half-pin	99.95
TIGR01661	352	ELAV_HUD_SF ELAV/HuD family splicing factor. These	99.94
TIGR01642	509	U2AF_lg U2 snRNP auxilliary factor, large subunit,	99.94
KOG4676|consensus	479		99.93
TIGR01628	562	PABP-1234 polyadenylate binding protein, human typ	99.92
KOG0148|consensus	321		99.91
TIGR01648	578	hnRNP-R-Q heterogeneous nuclear ribonucleoprotein	99.9
TIGR01649	481	hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor	99.9
TIGR01649	481	hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor	99.9
KOG0131|consensus	203		99.89
KOG0144|consensus	510		99.88
TIGR01648	578	hnRNP-R-Q heterogeneous nuclear ribonucleoprotein	99.87
TIGR01622	457	SF-CC1 splicing factor, CC1-like family. A homolog	99.87
KOG0127|consensus	678		99.87
KOG0117|consensus	506		99.86
KOG0145|consensus	360		99.86
KOG0127|consensus	678		99.86
TIGR01642	509	U2AF_lg U2 snRNP auxilliary factor, large subunit,	99.86
KOG0123|consensus	369		99.85
KOG0145|consensus	360		99.83
KOG0117|consensus	506		99.83
KOG0109|consensus	346		99.82
KOG0123|consensus	369		99.78
KOG0124|consensus	544		99.78
KOG0110|consensus	725		99.78
PLN03120	260	nucleic acid binding protein; Provisional	99.78
KOG0146|consensus	371		99.77
KOG0147|consensus	549		99.77
KOG0148|consensus	321		99.76
KOG4205|consensus	311		99.75
KOG0144|consensus	510		99.73
KOG1548|consensus	382		99.68
KOG0105|consensus	241		99.68
PLN03121	243	nucleic acid binding protein; Provisional	99.67
TIGR01659	346	sex-lethal sex-lethal family splicing factor. This	99.66
KOG0110|consensus	725		99.66
PLN03134	144	glycine-rich RNA-binding protein 4; Provisional	99.65
KOG4206|consensus	221		99.63
TIGR01645	612	half-pint poly-U binding splicing factor, half-pin	99.62
KOG1457|consensus	284		99.59
PF00076	70	RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or	99.57
KOG0147|consensus	549		99.56
KOG4211|consensus	510		99.53
KOG4212|consensus	608		99.46
KOG0125|consensus	376		99.45
PLN03134	144	glycine-rich RNA-binding protein 4; Provisional	99.45
PF14259	70	RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or	99.44
KOG0106|consensus	216		99.43
KOG0121|consensus	153		99.42
KOG0126|consensus	219		99.41
PLN03213	759	repressor of silencing 3; Provisional	99.41
KOG0131|consensus	203		99.39
KOG0121|consensus	153		99.39
smart00362	72	RRM_2 RNA recognition motif.	99.38
PF00076	70	RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or	99.37
KOG0149|consensus	247		99.37
PLN03121	243	nucleic acid binding protein; Provisional	99.37
PLN03120	260	nucleic acid binding protein; Provisional	99.37
KOG0107|consensus	195		99.34
KOG0114|consensus	124		99.32
KOG1190|consensus	492		99.32
KOG0122|consensus	270		99.3
PF14259	70	RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or	99.28
KOG0113|consensus	335		99.27
COG0724	306	RNA-binding proteins (RRM domain) [General functio	99.26
smart00360	71	RRM RNA recognition motif.	99.26
COG0724	306	RNA-binding proteins (RRM domain) [General functio	99.26
KOG1548|consensus	382		99.25
cd00590	74	RRM RRM (RNA recognition motif), also known as RBD	99.24
KOG0124|consensus	544		99.23
KOG0111|consensus	298		99.23
KOG4207|consensus	256		99.23
KOG0120|consensus	500		99.17
KOG0149|consensus	247		99.17
KOG0114|consensus	124		99.16
KOG0108|consensus	435		99.16
KOG0105|consensus	241		99.16
KOG0122|consensus	270		99.14
PF13893	56	RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or	99.13
KOG1190|consensus	492		99.12
KOG4454|consensus	267		99.11
KOG0113|consensus	335		99.08
KOG0107|consensus	195		99.05
KOG0130|consensus	170		99.04
smart00362	72	RRM_2 RNA recognition motif.	99.04
smart00361	70	RRM_1 RNA recognition motif.	99.01
KOG0109|consensus	346		98.98
smart00360	71	RRM RNA recognition motif.	98.97
KOG4206|consensus	221		98.96
KOG4212|consensus	608		98.96
KOG0125|consensus	376		98.95
KOG0126|consensus	219		98.95
cd00590	74	RRM RRM (RNA recognition motif), also known as RBD	98.95
KOG4207|consensus	256		98.94
KOG4205|consensus	311		98.94
PLN03213	759	repressor of silencing 3; Provisional	98.92
KOG0120|consensus	500		98.9
KOG0128|consensus	881		98.87
KOG0129|consensus	520		98.81
KOG0415|consensus	479		98.79
KOG1456|consensus	494		98.76
KOG0153|consensus	377		98.74
KOG0112|consensus	975		98.7
KOG1365|consensus	508		98.7
KOG0132|consensus	894		98.67
KOG0130|consensus	170		98.67
KOG0111|consensus	298		98.67
KOG4211|consensus	510		98.65
KOG4210|consensus	285		98.65
KOG0108|consensus	435		98.61
KOG4661|consensus	940		98.59
KOG1456|consensus	494		98.59
KOG4208|consensus	214		98.57
smart00361	70	RRM_1 RNA recognition motif.	98.55
KOG4209|consensus	231		98.53
KOG4454|consensus	267		98.52
KOG0132|consensus	894		98.46
PF13893	56	RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or	98.46
KOG0153|consensus	377		98.43
KOG0146|consensus	371		98.42
KOG0116|consensus	419		98.42
KOG0415|consensus	479		98.41
KOG0106|consensus	216		98.38
KOG4307|consensus	944		98.37
KOG0533|consensus	243		98.36
KOG4660|consensus	549		98.35
KOG4660|consensus	549		98.34
KOG0226|consensus	290		98.33
KOG4208|consensus	214		98.29
KOG0116|consensus	419		98.24
KOG0151|consensus	877		98.13
PF11608	90	Limkain-b1: Limkain b1; InterPro: IPR024582 This e	98.13
KOG1365|consensus	508		98.12
KOG1457|consensus	284		98.08
KOG4209|consensus	231		97.95
KOG4661|consensus	940		97.95
PF04059	97	RRM_2: RNA recognition motif 2; InterPro: IPR00720	97.87
KOG0533|consensus	243		97.73
KOG0151|consensus	877		97.54
KOG1995|consensus	351		97.49
KOG4676|consensus	479		97.47
PF14605	53	Nup35_RRM_2: Nup53/35/40-type RNA recognition moti	97.37
KOG0128|consensus	881		97.34
PF14605	53	Nup35_RRM_2: Nup53/35/40-type RNA recognition moti	97.33
PF08777	105	RRM_3: RNA binding motif; InterPro: IPR014886 This	97.32
KOG0226|consensus	290		97.31
COG5175	480	MOT2 Transcriptional repressor [Transcription]	97.3
PF05172	100	Nup35_RRM: Nup53/35/40-type RNA recognition motif;	97.26
PF08777	105	RRM_3: RNA binding motif; InterPro: IPR014886 This	97.19
KOG2193|consensus	584		97.18
PF04059	97	RRM_2: RNA recognition motif 2; InterPro: IPR00720	96.91
KOG4307|consensus	944		96.91
KOG4210|consensus	285		96.8
KOG1855|consensus	484		96.56
KOG1855|consensus	484		96.55
PF08952	146	DUF1866: Domain of unknown function (DUF1866) ; In	96.52
KOG3152|consensus	278		96.4
PF05172	100	Nup35_RRM: Nup53/35/40-type RNA recognition motif;	96.3
PF11608	90	Limkain-b1: Limkain b1; InterPro: IPR024582 This e	96.24
KOG1996|consensus	378		96.09
KOG3152|consensus	278		96.09
KOG4849|consensus	498		96.04
KOG2314|consensus	698		95.84
KOG2202|consensus	260		95.82
PF08675	87	RNA_bind: RNA binding domain; InterPro: IPR014789	95.25
COG5175	480	MOT2 Transcriptional repressor [Transcription]	95.02
KOG0129|consensus	520		94.83
KOG2314|consensus	698		94.6
KOG4849|consensus	498		94.32
KOG2193|consensus	584		94.26
KOG2253|consensus	668		94.13
PF10309	62	DUF2414: Protein of unknown function (DUF2414); In	93.98
KOG1995|consensus	351		93.96
KOG0115|consensus	275		93.35
KOG0115|consensus	275		93.15
KOG0112|consensus	975		93.05
KOG4285|consensus	350		92.47
PF07576	110	BRAP2: BRCA1-associated protein 2; InterPro: IPR01	92.42
KOG2202|consensus	260		91.73
KOG1996|consensus	378		91.56
KOG2416|consensus	718		91.55
KOG2068|consensus	327		91.16
PF03467	176	Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120	90.47
KOG4285|consensus	350		89.64
PF03467	176	Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120	88.72
PF08675	87	RNA_bind: RNA binding domain; InterPro: IPR014789	88.41
PF08952	146	DUF1866: Domain of unknown function (DUF1866) ; In	87.91
PF15023	166	DUF4523: Protein of unknown function (DUF4523)	87.2
PF10309	62	DUF2414: Protein of unknown function (DUF2414); In	87.11
PF04847	184	Calcipressin: Calcipressin; InterPro: IPR006931 Ca	87.1
KOG2416|consensus	718		87.08
KOG2591|consensus	684		86.98
KOG2135|consensus	526		86.6
PF15023	166	DUF4523: Protein of unknown function (DUF4523)	85.91
KOG0804|consensus	493		85.87
KOG2591|consensus	684		80.36

>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor

Probab=99.96  E-value=1.2e-27  Score=238.48  Aligned_cols=164  Identities=15%  Similarity=0.236  Sum_probs=135.2

Q ss_pred             CCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEee
Q psy14559         10 KTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTP   89 (405)
Q Consensus        10 ~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~   89 (405)
                      +..+|||+|||+.+|+++|+++|+.||+|.+|+|..   +..+++++|||||+|.+.++|+.|+..+|+..+.+..+.+.
T Consensus         2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~---d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~   78 (352)
T TIGR01661         2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVR---DKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVS   78 (352)
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEE---cCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEE
Confidence            467999999999999999999999999999999944   33468899999999999999999997666555554444444


Q ss_pred             cCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccCcEE
Q psy14559         90 YNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRTL  169 (405)
Q Consensus        90 ~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~rtv  169 (405)
                      +....                                               .                   .....++|
T Consensus        79 ~a~~~-----------------------------------------------~-------------------~~~~~~~l   92 (352)
T TIGR01661        79 YARPS-----------------------------------------------S-------------------DSIKGANL   92 (352)
T ss_pred             eeccc-----------------------------------------------c-------------------cccccceE
Confidence            32210                                               0                   00014689


Q ss_pred             EEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCC--eeEEEeeccC
Q psy14559        170 VAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKG--KTLQMFHSTQ  242 (405)
Q Consensus       170 fV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g--~~i~V~~a~~  242 (405)
                      ||+|||.++++++|+++|++||.|..++++.+  ++.++|||||+|.+.++|+.|+. |||..+.|  ++|.|.++..
T Consensus        93 ~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~  170 (352)
T TIGR01661        93 YVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANN  170 (352)
T ss_pred             EECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCC
Confidence            99999999999999999999999999999765  56789999999999999999998 99999887  5788888753

These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).

>TIGR01659 sex-lethal sex-lethal family splicing factor

Probab=99.95  E-value=2e-27  Score=236.12  Aligned_cols=165  Identities=16%  Similarity=0.187  Sum_probs=135.0

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCC-ccccceeE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNT-VFIDRALV   86 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~-~~~~~~~~   86 (405)
                      ....++|||+|||+++|+++|+++|+.||+|++|+|..   |..+++++|||||+|.++++|+.|++.+|. .+.++.+.
T Consensus       104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~---d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~  180 (346)
T TIGR01659       104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMR---DYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLK  180 (346)
T ss_pred             CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEe---cCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceee
Confidence            44678999999999999999999999999999999943   335788999999999999999999965444 44444333


Q ss_pred             EeecCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccC
Q psy14559         87 VTPYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIR  166 (405)
Q Consensus        87 vv~~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~  166 (405)
                       +.+...              .                                 .                   .....
T Consensus       181 -V~~a~p--------------~---------------------------------~-------------------~~~~~  193 (346)
T TIGR01659       181 -VSYARP--------------G---------------------------------G-------------------ESIKD  193 (346)
T ss_pred             -eecccc--------------c---------------------------------c-------------------ccccc
Confidence             222110              0                                 0                   00014


Q ss_pred             cEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCC--eeEEEeecc
Q psy14559        167 RTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKG--KTLQMFHST  241 (405)
Q Consensus       167 rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g--~~i~V~~a~  241 (405)
                      .+|||+|||+++|+++|+++|++||.|..++++.+  +++++|||||+|.+.++|++|++ ||+..+.|  ++|+|..+.
T Consensus       194 ~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~  273 (346)
T TIGR01659       194 TNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAE  273 (346)
T ss_pred             ceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECC
Confidence            58999999999999999999999999999999766  77899999999999999999999 99998876  688998876


Q ss_pred             C
Q psy14559        242 Q  242 (405)
Q Consensus       242 ~  242 (405)
                      .
T Consensus       274 ~  274 (346)
T TIGR01659       274 E  274 (346)
T ss_pred             c
Confidence            4

This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).

>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family

Probab=99.95  E-value=3.1e-27  Score=250.09  Aligned_cols=163  Identities=20%  Similarity=0.286  Sum_probs=134.3

Q ss_pred             cEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEeecC
Q psy14559         12 KVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTPYN   91 (405)
Q Consensus        12 ~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~~~   91 (405)
                      .+|||+|||+++||++|+++|+.||.|.+|++..   |..+++++|||||+|.+.++|+.|+...|...+.+..+.+.|.
T Consensus         1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~---d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s   77 (562)
T TIGR01628         1 ASLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCR---DSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWS   77 (562)
T ss_pred             CeEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEe---cCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecc
Confidence            3799999999999999999999999999999943   3356889999999999999999999766655444444444432


Q ss_pred             CCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccCcEEEE
Q psy14559         92 SGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRTLVA  171 (405)
Q Consensus        92 ~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~rtvfV  171 (405)
                      ..                                             ++.....                   ...+|||
T Consensus        78 ~~---------------------------------------------~~~~~~~-------------------~~~~vfV   93 (562)
T TIGR01628        78 QR---------------------------------------------DPSLRRS-------------------GVGNIFV   93 (562)
T ss_pred             cc---------------------------------------------ccccccc-------------------CCCceEE
Confidence            21                                             0000000                   1457999


Q ss_pred             eCCCCCCCHHHHHHHHhcCCCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559        172 INIEESVSPQELVDFFQKVGTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST  241 (405)
Q Consensus       172 ~NLp~~~tee~L~~~F~~~G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~  241 (405)
                      +|||.++++++|+++|+.||.|.+|++..+ +++++|||||+|.+.++|..|+. +||..+.|+.|.|....
T Consensus        94 ~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~  165 (562)
T TIGR01628        94 KNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFI  165 (562)
T ss_pred             cCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEeccc
Confidence            999999999999999999999999999765 67899999999999999999998 99999999999997654

There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.

>TIGR01622 SF-CC1 splicing factor, CC1-like family

Probab=99.95  E-value=5.7e-27  Score=241.90  Aligned_cols=177  Identities=20%  Similarity=0.331  Sum_probs=142.2

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      ....++|||+|||+.+|+++|+++|+.||+|.+|+++ .  +..+++++|||||+|.+.++|..|+.+++..+.++.+.+
T Consensus        86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~-~--d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v  162 (457)
T TIGR01622        86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCI-K--DRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIV  162 (457)
T ss_pred             ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe-e--cCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEE
Confidence            3457899999999999999999999999999999994 3  335688999999999999999999998888888777665


Q ss_pred             eecCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccCc
Q psy14559         88 TPYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRR  167 (405)
Q Consensus        88 v~~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~r  167 (405)
                      .......    .  ..  ...                                   ....+..            ....+
T Consensus       163 ~~~~~~~----~--~~--~~~-----------------------------------~~~~~~~------------~p~~~  187 (457)
T TIGR01622       163 QSSQAEK----N--RA--AKA-----------------------------------ATHQPGD------------IPNFL  187 (457)
T ss_pred             eecchhh----h--hh--hhc-----------------------------------ccccCCC------------CCCCC
Confidence            4321100    0  00  000                                   0000000            00157


Q ss_pred             EEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559        168 TLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       168 tvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~  242 (405)
                      +|||+|||+.+|+++|+++|++||.|..|.+..+  +|.++|||||+|.+.++|..|+. |||..+.|++|.|.++..
T Consensus       188 ~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~  265 (457)
T TIGR01622       188 KLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD  265 (457)
T ss_pred             EEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence            8999999999999999999999999999999765  56889999999999999999998 999999999999999763

A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.

>TIGR01645 half-pint poly-U binding splicing factor, half-pint family

Probab=99.95  E-value=1.6e-26  Score=241.64  Aligned_cols=178  Identities=13%  Similarity=0.228  Sum_probs=139.2

Q ss_pred             CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeE
Q psy14559          7 APVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALV   86 (405)
Q Consensus         7 ~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~   86 (405)
                      +....++|||+|||+.+|+++|+++|+.||+|.+|++ +.  |..+++++|||||+|.+.++|+.|++.+|+..++++.+
T Consensus       103 a~~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I-~~--D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~I  179 (612)
T TIGR01645       103 ALAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINM-SW--DPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNI  179 (612)
T ss_pred             hhcCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEE-ee--cCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEeccee
Confidence            3456789999999999999999999999999999999 33  33578899999999999999999997655555544443


Q ss_pred             EeecCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccC
Q psy14559         87 VTPYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIR  166 (405)
Q Consensus        87 vv~~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~  166 (405)
                      .+...... +.          .                              .+....              ........
T Consensus       180 kV~rp~~~-p~----------a------------------------------~~~~~~--------------~~~~~~~~  204 (612)
T TIGR01645       180 KVGRPSNM-PQ----------A------------------------------QPIIDM--------------VQEEAKKF  204 (612)
T ss_pred             eecccccc-cc----------c------------------------------cccccc--------------cccccccc
Confidence            33211100 00          0                              000000              00001124


Q ss_pred             cEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559        167 RTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       167 rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~  242 (405)
                      ++|||+|||+++++++|+++|+.||.|.++++..+  ++.++|||||+|.+.++|..|+. |||..++|+.|+|.++..
T Consensus       205 ~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~  283 (612)
T TIGR01645       205 NRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVT  283 (612)
T ss_pred             ceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Confidence            68999999999999999999999999999999876  56789999999999999999998 999999999999998864

In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.

>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor

Probab=99.94  E-value=1.4e-25  Score=223.55  Aligned_cols=231  Identities=13%  Similarity=0.175  Sum_probs=141.5

Q ss_pred             CCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccc--eeE
Q psy14559          9 VKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDR--ALV   86 (405)
Q Consensus         9 ~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~--~~~   86 (405)
                      ...++|||+|||+.+|+++|+++|+.||.|..+++... .  .++.++|||||+|.+.++|+.|++.+|+..+.+  ..+
T Consensus        87 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~-~--~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i  163 (352)
T TIGR01661        87 IKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSD-N--VTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPI  163 (352)
T ss_pred             cccceEEECCccccCCHHHHHHHHhccCCEEEEEEEec-C--CCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeE
Confidence            35678999999999999999999999999999999432 2  356789999999999999999997555544432  233


Q ss_pred             EeecCCCCCchHHHHHHH----H-hccCCCCCCC------CCCCCcc-cccccCCCCC---cc-----cccCCcccccCC
Q psy14559         87 VTPYNSGEIPDEQRALEI----A-AQQQGPNSGE------PKLPAHV-TNQIEGVPPN---QV-----ISTHDPVLVQHG  146 (405)
Q Consensus        87 vv~~~~~~~~~e~ka~~l----~-~~~~g~~~~~------~~~~~~~-~~~~~~~~~~---~~-----~~~~dp~~~~~~  146 (405)
                      .+.+.+.......+....    . .......+..      ...+.+. ..........   ..     .....+......
T Consensus       164 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (352)
T TIGR01661       164 TVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQR  243 (352)
T ss_pred             EEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhccccccccccc
Confidence            444443211000000000    0 0000000000      0000000 0000000000   00     000000000000


Q ss_pred             -CCCCC-----CCCCCCCCccccccCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHH
Q psy14559        147 -LPQYP-----PLPITYDTKKIEEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQAC  218 (405)
Q Consensus       147 -~~~~p-----~~~~~~~~~~~~~~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~  218 (405)
                       .+...     ..............+++|||+|||+++++++|+++|++||.|.+++++.|  ++.++|||||+|.+.++
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~  323 (352)
T TIGR01661       244 ASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDE  323 (352)
T ss_pred             CCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHH
Confidence             00000     00000001111223568999999999999999999999999999999866  78899999999999999


Q ss_pred             HHHHHH-hCCceeCCeeEEEeeccC
Q psy14559        219 VIPALK-LNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       219 A~~Al~-lng~~l~g~~i~V~~a~~  242 (405)
                      |.+|+. |||..|+||.|+|.++..
T Consensus       324 A~~Ai~~lnG~~~~gr~i~V~~~~~  348 (352)
T TIGR01661       324 AAMAILSLNGYTLGNRVLQVSFKTN  348 (352)
T ss_pred             HHHHHHHhCCCEECCeEEEEEEccC
Confidence            999998 999999999999999864

These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).

>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor

Probab=99.94  E-value=3.1e-25  Score=231.89  Aligned_cols=192  Identities=14%  Similarity=0.231  Sum_probs=135.8

Q ss_pred             ccCCCCCcEEEEcCCCCCCCHHHHHHHhccC------------CceEEEEEeeccCCCCCCccccEEEEEecchhhHHHH
Q psy14559          5 TVAPVKTKVVQVANIAPQATRDQMQTLFGYL------------GKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGIS   72 (405)
Q Consensus         5 ~~~~~~~~tLfVgNLp~~vTeedLr~lFs~~------------G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~A   72 (405)
                      .......++|||||||+.+|+++|+++|+.|            +.|..+.+         ++.+|||||+|.+.++|..|
T Consensus       169 ~~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~---------~~~kg~afVeF~~~e~A~~A  239 (509)
T TIGR01642       169 QQATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI---------NKEKNFAFLEFRTVEEATFA  239 (509)
T ss_pred             ccCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE---------CCCCCEEEEEeCCHHHHhhh
Confidence            3445667999999999999999999999974            34555555         34589999999999999999


Q ss_pred             HhccCCccccceeEEeecCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCC
Q psy14559         73 QHLTNTVFIDRALVVTPYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPP  152 (405)
Q Consensus        73 l~~~n~~~~~~~~~vv~~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~  152 (405)
                      |.+++..+.+..+.+....... +..         .      .  .+ .. .+          ...+........+.   
T Consensus       240 l~l~g~~~~g~~l~v~r~~~~~-~~~---------~------~--~~-~~-~~----------~~~~~~~~~~~~~~---  286 (509)
T TIGR01642       240 MALDSIIYSNVFLKIRRPHDYI-PVP---------Q------I--TP-EV-SQ----------KNPDDNAKNVEKLV---  286 (509)
T ss_pred             hcCCCeEeeCceeEecCccccC-Ccc---------c------c--CC-CC-CC----------CCCccccccccccc---
Confidence            9877776666665543211100 000         0      0  00 00 00          00000000000000   


Q ss_pred             CCCCCCCccccccCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCce
Q psy14559        153 LPITYDTKKIEEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTN  229 (405)
Q Consensus       153 ~~~~~~~~~~~~~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~  229 (405)
                           .........++|||+|||+.+++++|+++|+.||.|..+.++.+  +|.++|||||+|.+.++|..|+. |||..
T Consensus       287 -----~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~  361 (509)
T TIGR01642       287 -----NSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKD  361 (509)
T ss_pred             -----ccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCE
Confidence                 00111123679999999999999999999999999999999765  67899999999999999999998 99999


Q ss_pred             eCCeeEEEeeccCC
Q psy14559        230 LKGKTLQMFHSTQS  243 (405)
Q Consensus       230 l~g~~i~V~~a~~~  243 (405)
                      |.|+.|.|.++...
T Consensus       362 ~~~~~l~v~~a~~~  375 (509)
T TIGR01642       362 TGDNKLHVQRACVG  375 (509)
T ss_pred             ECCeEEEEEECccC
Confidence            99999999998543

Members of this subfamily are found in plants, metazoa and fungi.

>KOG4676|consensus

Probab=99.93  E-value=2.6e-26  Score=221.14  Aligned_cols=251  Identities=38%  Similarity=0.550  Sum_probs=213.5

Q ss_pred             CCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEee
Q psy14559         10 KTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTP   89 (405)
Q Consensus        10 ~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~   89 (405)
                      ....|.|.||++++|.++|+.||...|+|.+++|||+..+...+.....|||.|.+...+..|++++|++|+|++++|++
T Consensus         6 ~~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p   85 (479)
T KOG4676|consen    6 SLGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRP   85 (479)
T ss_pred             CCceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEe
Confidence            34599999999999999999999999999999999999899999999999999999999999999999999999999999


Q ss_pred             cCCCCCchHHHHHHHHhccC---CCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccC
Q psy14559         90 YNSGEIPDEQRALEIAAQQQ---GPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIR  166 (405)
Q Consensus        90 ~~~~~~~~e~ka~~l~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~  166 (405)
                      +.+..+|++. ++.+++.++   ++.++.+.|++.......+..+++++             ..|++|+..+..+.++..
T Consensus        86 ~~~~~~p~r~-af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ail-------------ktP~Lp~~~~A~kleeir  151 (479)
T KOG4676|consen   86 YGDEVIPDRF-AFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAIL-------------KTPELPPQAAAKKLEEIR  151 (479)
T ss_pred             cCCCCCccHH-HHHhcCcccccccccCCCCccCCCCccccccCCcccee-------------cCCCCChHhhhhhhHHHH
Confidence            9999999987 888777665   66777777775444433333322222             225666677777888889


Q ss_pred             cEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeeccCCCCC
Q psy14559        167 RTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQSIQK  246 (405)
Q Consensus       167 rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~~~~~~  246 (405)
                      +|++|++|+...-..++.+.|..+|+|.+..+..  +...-+|-++|....+...|+.++|..+.     ++++...+.+
T Consensus       152 Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~as--k~~s~~c~~sf~~qts~~halr~~gre~k-----~qhsr~ai~k  224 (479)
T KOG4676|consen  152 RTREVQSLISAAILPESGESFERKGEVSYAHTAS--KSRSSSCSHSFRKQTSSKHALRSHGRERK-----RQHSRRAIIK  224 (479)
T ss_pred             hhhhhhcchhhhcchhhhhhhhhcchhhhhhhhc--cCCCcchhhhHhhhhhHHHHHHhcchhhh-----hhhhhhhhcC
Confidence            9999999999999999999999999998887754  33345788999999999999999988876     6677777889


Q ss_pred             CCCCChHHHHHHHHHHHHHHHHhhhhhhhccCccc
Q psy14559        247 PEAKSNEAAQREIEEAMSRVKEAQNMISAAIDPVI  281 (405)
Q Consensus       247 p~~~~~~~~~~e~~~~~k~~~~~~~~~s~~~ep~~  281 (405)
                      |..+..+.++.++.+++...++.+.++++.|++..
T Consensus       225 P~kK~~k~a~~~is~s~s~~r~~r~~~~~~i~~~~  259 (479)
T KOG4676|consen  225 PHKKRSKSAERRISRSRSHSRDKRKDTREKIKEKE  259 (479)
T ss_pred             ccccchHHHHHHHHHHHhhhhhhhhhhhhhcchhh
Confidence            99999899999999999999999999999888754

>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family

Probab=99.92  E-value=1.1e-23  Score=223.04  Aligned_cols=168  Identities=15%  Similarity=0.219  Sum_probs=134.1

Q ss_pred             CCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEe
Q psy14559          9 VKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVT   88 (405)
Q Consensus         9 ~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv   88 (405)
                      ....+|||+|||+++|+++|+++|+.||.|.+|++. .+.   +++++|||||+|.+.++|..|+...|+..+++..+.+
T Consensus        86 ~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~-~~~---~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v  161 (562)
T TIGR01628        86 SGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVA-TDE---NGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYV  161 (562)
T ss_pred             cCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEee-ecC---CCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEE
Confidence            345689999999999999999999999999999994 332   4678999999999999999999765555544433333


Q ss_pred             ecCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccCcE
Q psy14559         89 PYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRT  168 (405)
Q Consensus        89 ~~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~rt  168 (405)
                      ......   ..                                           .. .              ......++
T Consensus       162 ~~~~~~---~~-------------------------------------------~~-~--------------~~~~~~~~  180 (562)
T TIGR01628       162 GRFIKK---HE-------------------------------------------RE-A--------------APLKKFTN  180 (562)
T ss_pred             eccccc---cc-------------------------------------------cc-c--------------ccccCCCe
Confidence            211100   00                                           00 0              00011468


Q ss_pred             EEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHH-hCCceeC----CeeEEEeecc
Q psy14559        169 LVAINIEESVSPQELVDFFQKVGTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALK-LNGTNLK----GKTLQMFHST  241 (405)
Q Consensus       169 vfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~-lng~~l~----g~~i~V~~a~  241 (405)
                      |||+|||+++|+++|+++|+.||.|.++.++.+ ++.++|||||+|.+.++|.+|++ |||..+.    |+.|.|..+.
T Consensus       181 l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~  259 (562)
T TIGR01628       181 LYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQ  259 (562)
T ss_pred             EEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeeccc
Confidence            999999999999999999999999999999766 67889999999999999999998 9999999    9999998875

There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.

>KOG0148|consensus

Probab=99.91  E-value=7.6e-24  Score=196.02  Aligned_cols=176  Identities=18%  Similarity=0.302  Sum_probs=145.5

Q ss_pred             CcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEeec
Q psy14559         11 TKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTPY   90 (405)
Q Consensus        11 ~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~~   90 (405)
                      .--|||+.|++.++-++||+-|.+||+|.+++++   +|..+++++|||||.|-+.++|+.|+..+|+-.++++.+...|
T Consensus        62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvi---rD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNW  138 (321)
T KOG0148|consen   62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVI---RDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNW  138 (321)
T ss_pred             ceeEEehhcchhcchHHHHHHhccccccccceEe---ecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccc
Confidence            4569999999999999999999999999999994   4667999999999999999999999999999999999998888


Q ss_pred             CCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccCcEEE
Q psy14559         91 NSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRTLV  170 (405)
Q Consensus        91 ~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~rtvf  170 (405)
                      +..+..+.        ++       ..+                  ..+.-                 ..+.+-..++||
T Consensus       139 ATRKp~e~--------n~-------~~l------------------tfdeV-----------------~NQssp~NtsVY  168 (321)
T KOG0148|consen  139 ATRKPSEM--------NG-------KPL------------------TFDEV-----------------YNQSSPDNTSVY  168 (321)
T ss_pred             cccCcccc--------CC-------CCc------------------cHHHH-----------------hccCCCCCceEE
Confidence            77542110        00       000                  00000                 011122278999


Q ss_pred             EeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCC
Q psy14559        171 AINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQS  243 (405)
Q Consensus       171 V~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~  243 (405)
                      ||||+..+||++|++.|+.||.|.+|++-    +.+|||||.|.+.|+|..||. +||+.+.|..++..+-+..
T Consensus       169 ~G~I~~~lte~~mr~~Fs~fG~I~EVRvF----k~qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~  238 (321)
T KOG0148|consen  169 VGNIASGLTEDLMRQTFSPFGPIQEVRVF----KDQGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEG  238 (321)
T ss_pred             eCCcCccccHHHHHHhcccCCcceEEEEe----cccceEEEEecchhhHHHHHHHhcCceeCceEEEEeccccC
Confidence            99999999999999999999999999994    458999999999999999998 9999999999998887654

>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family

Probab=99.90  E-value=8.2e-23  Score=213.44  Aligned_cols=159  Identities=19%  Similarity=0.197  Sum_probs=125.3

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccc-cceeE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFI-DRALV   86 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~-~~~~~   86 (405)
                      +...++|||+|||+++||++|+++|++||.|.+|+|+..    .+++++|||||+|.+.++|+.|++.+|...+ .+..+
T Consensus        55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D----~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l  130 (578)
T TIGR01648        55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD----FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLL  130 (578)
T ss_pred             CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC----CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccc
Confidence            344689999999999999999999999999999999443    2588999999999999999999986654333 12111


Q ss_pred             EeecCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccC
Q psy14559         87 VTPYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIR  166 (405)
Q Consensus        87 vv~~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~  166 (405)
                      .+.+                                                                        ....
T Consensus       131 ~V~~------------------------------------------------------------------------S~~~  138 (578)
T TIGR01648       131 GVCI------------------------------------------------------------------------SVDN  138 (578)
T ss_pred             cccc------------------------------------------------------------------------cccC
Confidence            1000                                                                        0015


Q ss_pred             cEEEEeCCCCCCCHHHHHHHHhcCCC-eeEEEEe-c--cCCCCCcEEEEEECCHHHHHHHHH-hCC--ceeCCeeEEEee
Q psy14559        167 RTLVAINIEESVSPQELVDFFQKVGT-VNYIRFC-T--RENDTNKYALVEFSDQACVIPALK-LNG--TNLKGKTLQMFH  239 (405)
Q Consensus       167 rtvfV~NLp~~~tee~L~~~F~~~G~-I~~i~i~-~--~~~~~rg~afV~F~~~e~A~~Al~-lng--~~l~g~~i~V~~  239 (405)
                      ++|||+|||+++++++|.+.|++++. +.++.+. .  +.++++|||||+|.+.++|..|+. |+.  ..+.|+.|.|.+
T Consensus       139 ~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~Vdw  218 (578)
T TIGR01648       139 CRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDW  218 (578)
T ss_pred             ceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEe
Confidence            78999999999999999999999863 4444442 2  345789999999999999999997 643  468899999998


Q ss_pred             ccC
Q psy14559        240 STQ  242 (405)
Q Consensus       240 a~~  242 (405)
                      +..
T Consensus       219 A~p  221 (578)
T TIGR01648       219 AEP  221 (578)
T ss_pred             ecc
Confidence            863

Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.

>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family

Probab=99.90  E-value=3.6e-22  Score=207.65  Aligned_cols=221  Identities=19%  Similarity=0.208  Sum_probs=133.1

Q ss_pred             CCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccC-Cccccc-eeEE
Q psy14559         10 KTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTN-TVFIDR-ALVV   87 (405)
Q Consensus        10 ~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n-~~~~~~-~~~v   87 (405)
                      ...+|||+||++.+|+++|+++|+.||+|.+|.+.. +.      .+++|||+|.+.++|..|++.+| ..+.++ ..+.
T Consensus        95 ~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~-~~------~~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~  167 (481)
T TIGR01649        95 KVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFT-KN------NVFQALVEFESVNSAQHAKAALNGADIYNGCCTLK  167 (481)
T ss_pred             ceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEe-cC------CceEEEEEECCHHHHHHHHHHhcCCcccCCceEEE
Confidence            345799999999999999999999999999999843 22      24789999999999999997544 444443 3344


Q ss_pred             eecCCC-CCc---hHHHHHHHHhccCCCCCCCCCCCCcc-----cc----------cccCC-------CCC----ccc-c
Q psy14559         88 TPYNSG-EIP---DEQRALEIAAQQQGPNSGEPKLPAHV-----TN----------QIEGV-------PPN----QVI-S  136 (405)
Q Consensus        88 v~~~~~-~~~---~e~ka~~l~~~~~g~~~~~~~~~~~~-----~~----------~~~~~-------~~~----~~~-~  136 (405)
                      +.+... .+.   ...+..... .  ...++........     ..          ...|.       ++.    .+. .
T Consensus       168 v~~sk~~~l~v~~~~~~s~dyt-~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  244 (481)
T TIGR01649       168 IEYAKPTRLNVKYNDDDSRDYT-N--PDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPP  244 (481)
T ss_pred             EEEecCCCceeEecccCCCCCc-C--CCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCc
Confidence            444331 100   000000000 0  0000000000000     00          00000       000    000 0


Q ss_pred             cCCcccccCCCCCCCCC-CCCCCCccccccCcEEEEeCCCC-CCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEEC
Q psy14559        137 THDPVLVQHGLPQYPPL-PITYDTKKIEEIRRTLVAINIEE-SVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFS  214 (405)
Q Consensus       137 ~~dp~~~~~~~~~~p~~-~~~~~~~~~~~~~rtvfV~NLp~-~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~  214 (405)
                      ...+.....+....+.. +............++|||+|||+ .+|+++|+++|+.||.|.+|+++.+   .+|||||+|.
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~---~~g~afV~f~  321 (481)
T TIGR01649       245 HGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN---KKETALIEMA  321 (481)
T ss_pred             ccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC---CCCEEEEEEC
Confidence            00000000000000000 00000001122367999999998 6999999999999999999999754   4799999999


Q ss_pred             CHHHHHHHHH-hCCceeCCeeEEEeeccCC
Q psy14559        215 DQACVIPALK-LNGTNLKGKTLQMFHSTQS  243 (405)
Q Consensus       215 ~~e~A~~Al~-lng~~l~g~~i~V~~a~~~  243 (405)
                      +.++|..|+. |||..|.|++|+|.+++..
T Consensus       322 ~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~  351 (481)
T TIGR01649       322 DPYQAQLALTHLNGVKLFGKPLRVCPSKQQ  351 (481)
T ss_pred             CHHHHHHHHHHhCCCEECCceEEEEEcccc
Confidence            9999999998 9999999999999998754

Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).

>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family

Probab=99.90  E-value=3.9e-22  Score=207.43  Aligned_cols=196  Identities=21%  Similarity=0.309  Sum_probs=133.2

Q ss_pred             CCCcEEEEcCCCC-CCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHh-ccCCccccceeE
Q psy14559          9 VKTKVVQVANIAP-QATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQH-LTNTVFIDRALV   86 (405)
Q Consensus         9 ~~~~tLfVgNLp~-~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~-~~n~~~~~~~~~   86 (405)
                      +++++|||+|||+ .+|+++|+++|+.||.|.+|++.. +       .+|+|||+|.+.++|..|+. +++..+.++.+.
T Consensus       273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~-~-------~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~  344 (481)
T TIGR01649       273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMK-N-------KKETALIEMADPYQAQLALTHLNGVKLFGKPLR  344 (481)
T ss_pred             CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEe-C-------CCCEEEEEECCHHHHHHHHHHhCCCEECCceEE
Confidence            4678999999998 699999999999999999999933 2       26999999999999999996 455555555555


Q ss_pred             EeecCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccC
Q psy14559         87 VTPYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIR  166 (405)
Q Consensus        87 vv~~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~  166 (405)
                      +............               .+.++.. .................+...              .........
T Consensus       345 v~~s~~~~~~~~~---------------~~~~~~~-~~~~~d~~~~~~~r~~~~~~~--------------~~~~~~~ps  394 (481)
T TIGR01649       345 VCPSKQQNVQPPR---------------EGQLDDG-LTSYKDYSSSRNHRFKKPGSA--------------NKNNIQPPS  394 (481)
T ss_pred             EEEcccccccCCC---------------CCcCcCC-CcccccccCCccccCCCcccc--------------cccccCCCC
Confidence            5432221110000               0000000 000000000000000000000              000111226


Q ss_pred             cEEEEeCCCCCCCHHHHHHHHhcCCC--eeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCee------EEE
Q psy14559        167 RTLVAINIEESVSPQELVDFFQKVGT--VNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKT------LQM  237 (405)
Q Consensus       167 rtvfV~NLp~~~tee~L~~~F~~~G~--I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~------i~V  237 (405)
                      ++|||+|||+++|+++|+++|+.||.  |..+++..+.+..+++|||+|.+.++|..|+. |||+.|.|+.      |+|
T Consensus       395 ~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv  474 (481)
T TIGR01649       395 ATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKDNERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKV  474 (481)
T ss_pred             cEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCCCCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEE
Confidence            79999999999999999999999998  88888854434468999999999999999998 9999999985      999


Q ss_pred             eeccC
Q psy14559        238 FHSTQ  242 (405)
Q Consensus       238 ~~a~~  242 (405)
                      .+++.
T Consensus       475 ~fs~~  479 (481)
T TIGR01649       475 SFSTS  479 (481)
T ss_pred             EeccC
Confidence            99874

Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).

>KOG0131|consensus

Probab=99.89  E-value=4.2e-23  Score=181.34  Aligned_cols=170  Identities=16%  Similarity=0.263  Sum_probs=140.9

Q ss_pred             ccCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCc-cccc
Q psy14559          5 TVAPVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTV-FIDR   83 (405)
Q Consensus         5 ~~~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~-~~~~   83 (405)
                      ..+.....||||+||++.+|++.|++||-+.|+|.++++ |+++  -+..++||||++|.++++|+.|++.+|++ ++++
T Consensus         3 ~~~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~i-PkDr--v~~~~qGygF~Ef~~eedadYAikiln~VkLYgr   79 (203)
T KOG0131|consen    3 IIERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHI-PKDR--VTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGR   79 (203)
T ss_pred             ccccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeec-chhh--hcccccceeEEEEechhhhHHHHHHHHHHHhcCc
Confidence            345677899999999999999999999999999999999 7654  56789999999999999999999988765 4566


Q ss_pred             eeEEeecCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCcccc
Q psy14559         84 ALVVTPYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIE  163 (405)
Q Consensus        84 ~~~vv~~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~  163 (405)
                      .+.+-.....                                                                  .+..
T Consensus        80 pIrv~kas~~------------------------------------------------------------------~~nl   93 (203)
T KOG0131|consen   80 PIRVNKASAH------------------------------------------------------------------QKNL   93 (203)
T ss_pred             eeEEEecccc------------------------------------------------------------------cccc
Confidence            5554332110                                                                  0000


Q ss_pred             ccCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEE-EEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEee
Q psy14559        164 EIRRTLVAINIEESVSPQELVDFFQKVGTVNYI-RFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFH  239 (405)
Q Consensus       164 ~~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i-~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~  239 (405)
                      ..+.++||+||++.+++..|.+.|+.||.+.+. +++++  +|.++|||||.|.+.+++.+|+. +||+.+..++|.|.+
T Consensus        94 ~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~y  173 (203)
T KOG0131|consen   94 DVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSY  173 (203)
T ss_pred             cccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEE
Confidence            114689999999999999999999999988774 44444  67899999999999999999999 999999999999999


Q ss_pred             ccCC
Q psy14559        240 STQS  243 (405)
Q Consensus       240 a~~~  243 (405)
                      +...
T Consensus       174 a~k~  177 (203)
T KOG0131|consen  174 AFKK  177 (203)
T ss_pred             EEec
Confidence            8644

>KOG0144|consensus

Probab=99.88  E-value=1.1e-22  Score=198.40  Aligned_cols=170  Identities=21%  Similarity=0.307  Sum_probs=132.7

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHh-ccCCccccceeE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQH-LTNTVFIDRALV   86 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~-~~n~~~~~~~~~   86 (405)
                      ..+.-++|||-||.++||.|||++|++||.|.+|.| .  +|++++.++|||||.|.+.++|..|+. ++|...+-+...
T Consensus        31 d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl-~--kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~  107 (510)
T KOG0144|consen   31 DGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINL-I--KDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHH  107 (510)
T ss_pred             CchhhhheeccCCccccHHHHHHHHHHhCceeEEEe-e--cccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCc
Confidence            345678999999999999999999999999999999 3  356889999999999999999998874 444433221110


Q ss_pred             EeecCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccC
Q psy14559         87 VTPYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIR  166 (405)
Q Consensus        87 vv~~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~  166 (405)
                      -+.                                             .+..|.....                 . ...
T Consensus       108 pvq---------------------------------------------vk~Ad~E~er-----------------~-~~e  124 (510)
T KOG0144|consen  108 PVQ---------------------------------------------VKYADGERER-----------------I-VEE  124 (510)
T ss_pred             cee---------------------------------------------ecccchhhhc-----------------c-ccc
Confidence            000                                             0000100000                 0 116


Q ss_pred             cEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHH-hCCc-eeCC--eeEEEeecc
Q psy14559        167 RTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALK-LNGT-NLKG--KTLQMFHST  241 (405)
Q Consensus       167 rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~-lng~-~l~g--~~i~V~~a~  241 (405)
                      ++||||-|+..+||.+++++|++||.|++|.|.++ .+.+||||||+|.+.+.|..|++ |||. .+.|  .+|-|+++.
T Consensus       125 ~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFAD  204 (510)
T KOG0144|consen  125 RKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFAD  204 (510)
T ss_pred             hhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecc
Confidence            89999999999999999999999999999999876 78899999999999999999999 9994 5555  488999886


Q ss_pred             CC
Q psy14559        242 QS  243 (405)
Q Consensus       242 ~~  243 (405)
                      ..
T Consensus       205 tq  206 (510)
T KOG0144|consen  205 TQ  206 (510)
T ss_pred             cC
Confidence            33

>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family

Probab=99.87  E-value=1.2e-21  Score=204.77  Aligned_cols=164  Identities=17%  Similarity=0.300  Sum_probs=128.5

Q ss_pred             CCcEEEEcCCCCCCCHHHHHHHhccCCc-eEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHh-ccC-CccccceeE
Q psy14559         10 KTKVVQVANIAPQATRDQMQTLFGYLGK-VEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQH-LTN-TVFIDRALV   86 (405)
Q Consensus        10 ~~~tLfVgNLp~~vTeedLr~lFs~~G~-I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~-~~n-~~~~~~~~~   86 (405)
                      ..++|||+|||+++|+++|.++|+.++. +.++.+++...  ..++++|||||+|.+.++|..|++ +++ ...+.+..+
T Consensus       137 ~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~--~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I  214 (578)
T TIGR01648       137 DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAA--DKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVI  214 (578)
T ss_pred             cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEecccc--ccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceE
Confidence            4689999999999999999999999875 66666655432  346789999999999999999985 332 334444455


Q ss_pred             EeecCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccC
Q psy14559         87 VTPYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIR  166 (405)
Q Consensus        87 vv~~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~  166 (405)
                      .+.|.......                                         ++                   . .....
T Consensus       215 ~VdwA~p~~~~-----------------------------------------d~-------------------~-~~~~~  233 (578)
T TIGR01648       215 AVDWAEPEEEV-----------------------------------------DE-------------------D-VMAKV  233 (578)
T ss_pred             EEEeecccccc-----------------------------------------cc-------------------c-ccccc
Confidence            55554321000                                         00                   0 00014


Q ss_pred             cEEEEeCCCCCCCHHHHHHHHhcC--CCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559        167 RTLVAINIEESVSPQELVDFFQKV--GTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       167 rtvfV~NLp~~~tee~L~~~F~~~--G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~  242 (405)
                      ++|||+||++++|+++|+++|++|  |.|.+|+++      ++||||+|.+.++|.+|+. |||..|.|+.|+|.+++.
T Consensus       234 k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp  306 (578)
T TIGR01648       234 KILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKP  306 (578)
T ss_pred             cEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccC
Confidence            689999999999999999999999  999999774      5699999999999999998 999999999999999964

Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.

>TIGR01622 SF-CC1 splicing factor, CC1-like family

Probab=99.87  E-value=2.9e-20  Score=191.99  Aligned_cols=226  Identities=15%  Similarity=0.172  Sum_probs=138.7

Q ss_pred             CCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEee
Q psy14559         10 KTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTP   89 (405)
Q Consensus        10 ~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~   89 (405)
                      ..++|||+|||+.+|+++|+++|+.||.|.+|.+...   ..+++++|||||+|.+.++|..|+..+|+..+++..+.+.
T Consensus       185 ~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d---~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~  261 (457)
T TIGR01622       185 NFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRD---PETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVG  261 (457)
T ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEc---CCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEE
Confidence            3689999999999999999999999999999999442   2457889999999999999999998666666666666666


Q ss_pred             cCCCCCchHHHHHHHHhccC-----CC------------------CCCCCCCCCccc--ccccCCCCCcccccCCccccc
Q psy14559         90 YNSGEIPDEQRALEIAAQQQ-----GP------------------NSGEPKLPAHVT--NQIEGVPPNQVISTHDPVLVQ  144 (405)
Q Consensus        90 ~~~~~~~~e~ka~~l~~~~~-----g~------------------~~~~~~~~~~~~--~~~~~~~~~~~~~~~dp~~~~  144 (405)
                      ++......... ........     +.                  ..+...+++...  ..+.............+....
T Consensus       262 ~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (457)
T TIGR01622       262 YAQDSTYLLDA-ANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYA  340 (457)
T ss_pred             EccCCCccccc-hhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhcccccccccccccccccc
Confidence            64421111000 00000000     00                  000001110000  000000000000000000000


Q ss_pred             CCCCCCCCCCCCCCCccccccCcEEEEeCCCCCCC----------HHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEEC
Q psy14559        145 HGLPQYPPLPITYDTKKIEEIRRTLVAINIEESVS----------PQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFS  214 (405)
Q Consensus       145 ~~~~~~p~~~~~~~~~~~~~~~rtvfV~NLp~~~t----------ee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~  214 (405)
                      .........+..+.........+.|+|.||....+          .++|++.|++||.|..|.+..  ....|++||+|.
T Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~--~~~~G~~fV~F~  418 (457)
T TIGR01622       341 TGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDT--KNSAGKIYLKFS  418 (457)
T ss_pred             ccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeC--CCCceeEEEEEC
Confidence            00000000000111111223467899999965544          368999999999999998853  456799999999


Q ss_pred             CHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559        215 DQACVIPALK-LNGTNLKGKTLQMFHST  241 (405)
Q Consensus       215 ~~e~A~~Al~-lng~~l~g~~i~V~~a~  241 (405)
                      +.++|.+|++ |||..|+|+.|.+.+..
T Consensus       419 ~~e~A~~A~~~lnGr~f~gr~i~~~~~~  446 (457)
T TIGR01622       419 SVDAALAAFQALNGRYFGGKMITAAFVV  446 (457)
T ss_pred             CHHHHHHHHHHhcCcccCCeEEEEEEEc
Confidence            9999999999 99999999999999875

A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.

>KOG0127|consensus

Probab=99.87  E-value=7.7e-21  Score=190.13  Aligned_cols=223  Identities=18%  Similarity=0.263  Sum_probs=146.3

Q ss_pred             CCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEee
Q psy14559         10 KTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTP   89 (405)
Q Consensus        10 ~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~   89 (405)
                      +.-.|.|+|||+.|.+++|+.+|+.||.|.+|.| |+..+   ++..|||||+|....+|..|++.+|+..++++.+++.
T Consensus       116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~I-P~k~d---gklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVD  191 (678)
T KOG0127|consen  116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVI-PRKKD---GKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVD  191 (678)
T ss_pred             ccceEEeecCCcccCcHHHHHHHhhcceEEEEEc-ccCCC---CCccceEEEEEeeHHHHHHHHHhccCceecCceeEEe
Confidence            3567999999999999999999999999999999 76553   4556999999999999999999999999999999999


Q ss_pred             cCCCC--Cch----HHHHHHHHhc---------cCCC--CC--CCCCCCCcccccc-------cCCCCCcccccCCcccc
Q psy14559         90 YNSGE--IPD----EQRALEIAAQ---------QQGP--NS--GEPKLPAHVTNQI-------EGVPPNQVISTHDPVLV  143 (405)
Q Consensus        90 ~~~~~--~~~----e~ka~~l~~~---------~~g~--~~--~~~~~~~~~~~~~-------~~~~~~~~~~~~dp~~~  143 (405)
                      |+..+  +.+    +...+.....         ..+-  ..  +.......-...+       .+..... ....|... 
T Consensus       192 WAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee-~~~vDd~e-  269 (678)
T KOG0127|consen  192 WAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEE-EDDVDDEE-  269 (678)
T ss_pred             eecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhcccccccc-cccccccc-
Confidence            98652  111    0000000000         0000  00  0000000000000       0000000 00000000 


Q ss_pred             cCCCCCCCCCCCCCCC--ccccccCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHH
Q psy14559        144 QHGLPQYPPLPITYDT--KKIEEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACV  219 (405)
Q Consensus       144 ~~~~~~~p~~~~~~~~--~~~~~~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A  219 (405)
                      ..+  ..++.......  ......++||||.|||+++|+++|.+.|++||+|.++.++.+  ++.++|.|||.|.++.++
T Consensus       270 ~S~--~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~  347 (678)
T KOG0127|consen  270 SSG--KKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAA  347 (678)
T ss_pred             ccc--cCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHH
Confidence            000  00000000000  111223689999999999999999999999999999998754  889999999999999999


Q ss_pred             HHHHHh------CC-ceeCCeeEEEeec
Q psy14559        220 IPALKL------NG-TNLKGKTLQMFHS  240 (405)
Q Consensus       220 ~~Al~l------ng-~~l~g~~i~V~~a  240 (405)
                      .+||..      .| ..|.||.|+|..+
T Consensus       348 ~~ci~~Aspa~e~g~~ll~GR~Lkv~~A  375 (678)
T KOG0127|consen  348 QNCIEAASPASEDGSVLLDGRLLKVTLA  375 (678)
T ss_pred             HHHHHhcCccCCCceEEEeccEEeeeec
Confidence            999973      23 7899999999887

>KOG0117|consensus

Probab=99.86  E-value=4.2e-21  Score=188.31  Aligned_cols=163  Identities=20%  Similarity=0.359  Sum_probs=137.8

Q ss_pred             CCCcEEEEcCCCCCCCHHHHHHHhccCCc-eEEEEEeeccCCCCCCccccEEEEEecchhhHHHHH-hcc-CCcccccee
Q psy14559          9 VKTKVVQVANIAPQATRDQMQTLFGYLGK-VEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQ-HLT-NTVFIDRAL   85 (405)
Q Consensus         9 ~~~~tLfVgNLp~~vTeedLr~lFs~~G~-I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al-~~~-n~~~~~~~~   85 (405)
                      -.+|.|||||||.+.++++|.+.|++.++ |++|.+|+...|  +.++||||||+|.+...|..|- +++ ..+.+.+..
T Consensus       162 van~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~d--k~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~  239 (506)
T KOG0117|consen  162 VANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDD--KTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNA  239 (506)
T ss_pred             eecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccc--cccccceEEEEeecchhHHHHHhhccCCceeecCCc
Confidence            35789999999999999999999999999 999999887665  4678999999999999998885 454 456667777


Q ss_pred             EEeecCCCCC-chHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccc
Q psy14559         86 VVTPYNSGEI-PDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEE  164 (405)
Q Consensus        86 ~vv~~~~~~~-~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~  164 (405)
                      +.|.|++... +++..                                           .                  + 
T Consensus       240 ~tVdWAep~~e~ded~-------------------------------------------m------------------s-  257 (506)
T KOG0117|consen  240 ITVDWAEPEEEPDEDT-------------------------------------------M------------------S-  257 (506)
T ss_pred             ceeeccCcccCCChhh-------------------------------------------h------------------h-
Confidence            8888887532 11110                                           0                  0 


Q ss_pred             cCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559        165 IRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST  241 (405)
Q Consensus       165 ~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~  241 (405)
                      .-+-|||.||+.++|+|.|+++|++||.|..|+.+      |.||||.|.+.++|.+|++ +||+.|.|..|.|..++
T Consensus       258 ~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~------rDYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAK  329 (506)
T KOG0117|consen  258 KVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKP------RDYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAK  329 (506)
T ss_pred             heeeeeeeccchhhhHHHHHHHHHhccceEEeecc------cceeEEeecchHHHHHHHHHhcCceecCceEEEEecC
Confidence            03469999999999999999999999999999775      4599999999999999999 99999999999999997

>KOG0145|consensus

Probab=99.86  E-value=1.9e-21  Score=179.20  Aligned_cols=163  Identities=17%  Similarity=0.264  Sum_probs=135.0

Q ss_pred             cEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEeecC
Q psy14559         12 KVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTPYN   91 (405)
Q Consensus        12 ~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~~~   91 (405)
                      ..|.|.-||-++|+|+||.||+..|+|++|+++   +|+.++++-||+||.|.+++||++|+.-.|+.-+...-+.+.++
T Consensus        42 TNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLv---RDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyA  118 (360)
T KOG0145|consen   42 TNLIVNYLPQNMTQDELRSLFGSIGEIESCKLV---RDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYA  118 (360)
T ss_pred             ceeeeeecccccCHHHHHHHhhcccceeeeeee---eccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEec
Confidence            348888899999999999999999999999994   46678999999999999999999999877766554444444332


Q ss_pred             CCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccCcEEEE
Q psy14559         92 SGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRTLVA  171 (405)
Q Consensus        92 ~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~rtvfV  171 (405)
                      ..              +                                 ..                   .-...+|||
T Consensus       119 RP--------------S---------------------------------s~-------------------~Ik~aNLYv  132 (360)
T KOG0145|consen  119 RP--------------S---------------------------------SD-------------------SIKDANLYV  132 (360)
T ss_pred             cC--------------C---------------------------------hh-------------------hhcccceEE
Confidence            21              0                                 00                   001457999


Q ss_pred             eCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCe--eEEEeeccCC
Q psy14559        172 INIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGK--TLQMFHSTQS  243 (405)
Q Consensus       172 ~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~--~i~V~~a~~~  243 (405)
                      ++||..+|..||+.+|++||.|..-+|..|  +|.+||.+||-|....+|+.|+. |||+.-.|-  +|.|+++++.
T Consensus       133 SGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannP  209 (360)
T KOG0145|consen  133 SGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNP  209 (360)
T ss_pred             ecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCc
Confidence            999999999999999999999988887554  78899999999999999999999 999887764  8999999754

>KOG0127|consensus

Probab=99.86  E-value=3.2e-21  Score=192.85  Aligned_cols=188  Identities=16%  Similarity=0.253  Sum_probs=139.4

Q ss_pred             cEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEeecC
Q psy14559         12 KVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTPYN   91 (405)
Q Consensus        12 ~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~~~   91 (405)
                      .||||++||+++|.++|.++||.+|+|..|.+. +  +..++.++|||||.|.=.+|++.|+...++..++++++-+..+
T Consensus         6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vV-t--~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A   82 (678)
T KOG0127|consen    6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVV-T--NKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPA   82 (678)
T ss_pred             ceEEEecCCCccchhHHHHhhhcccCcceeEEe-c--CCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccc
Confidence            899999999999999999999999999999884 3  2345689999999999999999999877766565555554443


Q ss_pred             CCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccCcEEEE
Q psy14559         92 SGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRTLVA  171 (405)
Q Consensus        92 ~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~rtvfV  171 (405)
                      ......+.       .    ..+...       ++       -.....+...               ........-.|.|
T Consensus        83 ~~R~r~e~-------~----~~~e~~-------~v-------eK~~~q~~~~---------------k~~v~~~k~rLII  122 (678)
T KOG0127|consen   83 KKRARSEE-------V----EKGENK-------AV-------EKPIEQKRPT---------------KAKVDLPKWRLII  122 (678)
T ss_pred             cccccchh-------c----ccccch-------hh-------hcccccCCcc---------------hhhccCccceEEe
Confidence            32111110       0    000000       00       0000000000               0011111568999


Q ss_pred             eCCCCCCCHHHHHHHHhcCCCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559        172 INIEESVSPQELVDFFQKVGTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       172 ~NLp~~~tee~L~~~F~~~G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~  242 (405)
                      .||||.|.+.+|+.+|+.||.|..|.|++. .|+-.|||||+|....+|..|+. +||..|.||+|-|.++-.
T Consensus       123 RNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~  195 (678)
T KOG0127|consen  123 RNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD  195 (678)
T ss_pred             ecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence            999999999999999999999999999865 56666999999999999999999 999999999999999843

>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor

Probab=99.86  E-value=2.5e-20  Score=194.85  Aligned_cols=191  Identities=13%  Similarity=0.165  Sum_probs=131.5

Q ss_pred             CCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEe
Q psy14559          9 VKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVT   88 (405)
Q Consensus         9 ~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv   88 (405)
                      ...++|||+|||+.+|+++|+++|+.||.|..+.+..   +..++.++|||||+|.+.++|..|+..+|+..+++..+.+
T Consensus       293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~---~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v  369 (509)
T TIGR01642       293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIK---DIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHV  369 (509)
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEe---cCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence            3458999999999999999999999999999999843   3346889999999999999999999765555554444444


Q ss_pred             ecCC-CCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccCc
Q psy14559         89 PYNS-GEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRR  167 (405)
Q Consensus        89 ~~~~-~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~r  167 (405)
                      .++. +.......      ...+      ..+   .        .    ...+.......            .......+
T Consensus       370 ~~a~~~~~~~~~~------~~~~------~~~---~--------~----~~~~~~~~~~~------------~~~~~~s~  410 (509)
T TIGR01642       370 QRACVGANQATID------TSNG------MAP---V--------T----LLAKALSQSIL------------QIGGKPTK  410 (509)
T ss_pred             EECccCCCCCCcc------cccc------ccc---c--------c----cccccchhhhc------------cccCCCce
Confidence            3332 21100000      0000      000   0        0    00000000000            00011256


Q ss_pred             EEEEeCCCCC--C--------CHHHHHHHHhcCCCeeEEEEecc-----CCCCCcEEEEEECCHHHHHHHHH-hCCceeC
Q psy14559        168 TLVAINIEES--V--------SPQELVDFFQKVGTVNYIRFCTR-----ENDTNKYALVEFSDQACVIPALK-LNGTNLK  231 (405)
Q Consensus       168 tvfV~NLp~~--~--------tee~L~~~F~~~G~I~~i~i~~~-----~~~~rg~afV~F~~~e~A~~Al~-lng~~l~  231 (405)
                      +|++.|+...  +        ..++|++.|++||.|..|.|+.+     ++...|+|||+|.+.++|.+|+. |||..|+
T Consensus       411 v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~  490 (509)
T TIGR01642       411 VVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFN  490 (509)
T ss_pred             EEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEEC
Confidence            8999999642  1        23679999999999999999753     23457999999999999999998 9999999


Q ss_pred             CeeEEEeecc
Q psy14559        232 GKTLQMFHST  241 (405)
Q Consensus       232 g~~i~V~~a~  241 (405)
                      |+.|.|.+..
T Consensus       491 gr~v~~~~~~  500 (509)
T TIGR01642       491 DRVVVAAFYG  500 (509)
T ss_pred             CeEEEEEEeC
Confidence            9999999875

Members of this subfamily are found in plants, metazoa and fungi.

>KOG0123|consensus

Probab=99.85  E-value=2.8e-20  Score=186.16  Aligned_cols=151  Identities=23%  Similarity=0.323  Sum_probs=130.6

Q ss_pred             cEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEeecC
Q psy14559         12 KVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTPYN   91 (405)
Q Consensus        12 ~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~~~   91 (405)
                      .+||||   +++|+..|+++|+.+|+|.++++.   +|. +  +-|||||.|.++++|+.|+..+|...+.+..+.+.|.
T Consensus         2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc---~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s   72 (369)
T KOG0123|consen    2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVC---RDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWS   72 (369)
T ss_pred             CceecC---CcCChHHHHHHhcccCCceeEEEe---ecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehh
Confidence            479999   999999999999999999999993   344 3  8999999999999999999887776666655555543


Q ss_pred             CCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccCcEEEE
Q psy14559         92 SGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRTLVA  171 (405)
Q Consensus        92 ~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~rtvfV  171 (405)
                      ..                                             |                          ...|||
T Consensus        73 ~r---------------------------------------------d--------------------------~~~~~i   81 (369)
T KOG0123|consen   73 QR---------------------------------------------D--------------------------PSLVFI   81 (369)
T ss_pred             cc---------------------------------------------C--------------------------Cceeee
Confidence            21                                             1                          112999


Q ss_pred             eCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCC
Q psy14559        172 INIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQS  243 (405)
Q Consensus       172 ~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~  243 (405)
                      .||+++++.++|.++|+.||+|.+|++..+...++|| ||+|++.++|.+|+. +||..+.|++|.|......
T Consensus        82 ~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~  153 (369)
T KOG0123|consen   82 KNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERK  153 (369)
T ss_pred             cCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccch
Confidence            9999999999999999999999999998775559999 999999999999999 9999999999999887644

>KOG0145|consensus

Probab=99.83  E-value=1.7e-19  Score=166.30  Aligned_cols=222  Identities=13%  Similarity=0.165  Sum_probs=143.5

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccc--ccee
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFI--DRAL   85 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~--~~~~   85 (405)
                      .-....|||++||.++|..+|.++|++||.|..-+|+.   |..++.++|.|||.|....+|+.|++..|+..-  ....
T Consensus       124 ~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~---dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tep  200 (360)
T KOG0145|consen  124 SIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILV---DQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEP  200 (360)
T ss_pred             hhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhh---hcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCC
Confidence            34457899999999999999999999999998888843   335799999999999999999999987665332  2233


Q ss_pred             EEeecCCCCCchHHHH-HHHHhccCCCCCCCCCCC-CcccccccCCCCCcccccCCcccccCCCCCCCC--C--CCCCCC
Q psy14559         86 VVTPYNSGEIPDEQRA-LEIAAQQQGPNSGEPKLP-AHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPP--L--PITYDT  159 (405)
Q Consensus        86 ~vv~~~~~~~~~e~ka-~~l~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~--~--~~~~~~  159 (405)
                      +.+.+++........+ ++.+-.++. ....+.+- +.....+...        ..|......+++..-  +  ...+..
T Consensus       201 ItVKFannPsq~t~~a~ls~ly~sp~-rr~~Gp~hh~~~r~r~~~~--------~~~~~~~~rfsP~~~d~m~~l~~~~l  271 (360)
T KOG0145|consen  201 ITVKFANNPSQKTNQALLSQLYQSPA-RRYGGPMHHQAQRFRLDNL--------LNPHAAQARFSPMTIDGMSGLAGVNL  271 (360)
T ss_pred             eEEEecCCcccccchhhhHHhhcCcc-ccCCCcccchhhhhccccc--------cchhhhhccCCCccccccceeeeecc
Confidence            4555555421111111 111111100 00000000 0000000000        000000000000000  0  000000


Q ss_pred             ccccccCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEE
Q psy14559        160 KKIEEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQ  236 (405)
Q Consensus       160 ~~~~~~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~  236 (405)
                      .......-.|||-||.++++|.-|..+|++||.|..+++++|  +++.|||+||++.+.++|..|+. |||..+++|.|.
T Consensus       272 p~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQ  351 (360)
T KOG0145|consen  272 PGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQ  351 (360)
T ss_pred             CCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEE
Confidence            011122678999999999999999999999999999999998  57899999999999999999998 999999999999


Q ss_pred             Eeecc
Q psy14559        237 MFHST  241 (405)
Q Consensus       237 V~~a~  241 (405)
                      |.+..
T Consensus       352 VsFKt  356 (360)
T KOG0145|consen  352 VSFKT  356 (360)
T ss_pred             EEEec
Confidence            98865

>KOG0117|consensus

Probab=99.83  E-value=3.5e-19  Score=174.93  Aligned_cols=161  Identities=19%  Similarity=0.225  Sum_probs=130.5

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhc-cCCccccceeE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHL-TNTVFIDRALV   86 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~-~n~~~~~~~~~   86 (405)
                      ++.-|-||||.||.++.|++|.-||++.|+|-+++|.+ +.  -++.++|||||.|.+.++|+.|++. +|..+.-+..+
T Consensus        80 p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMm-D~--~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~i  156 (506)
T KOG0117|consen   80 PPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMM-DP--FSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLL  156 (506)
T ss_pred             CCCCceEEecCCCccccchhhHHHHHhccceeeEEEee-cc--cCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEe
Confidence            45568899999999999999999999999999999954 32  3588999999999999999999964 44433322222


Q ss_pred             EeecCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccC
Q psy14559         87 VTPYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIR  166 (405)
Q Consensus        87 vv~~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~  166 (405)
                      -+.                                                                        .+...
T Consensus       157 gvc------------------------------------------------------------------------~Svan  164 (506)
T KOG0117|consen  157 GVC------------------------------------------------------------------------VSVAN  164 (506)
T ss_pred             EEE------------------------------------------------------------------------Eeeec
Confidence            111                                                                        01126


Q ss_pred             cEEEEeCCCCCCCHHHHHHHHhcCC-CeeEEEEe---ccCCCCCcEEEEEECCHHHHHHHHH--hCC-ceeCCeeEEEee
Q psy14559        167 RTLVAINIEESVSPQELVDFFQKVG-TVNYIRFC---TRENDTNKYALVEFSDQACVIPALK--LNG-TNLKGKTLQMFH  239 (405)
Q Consensus       167 rtvfV~NLp~~~tee~L~~~F~~~G-~I~~i~i~---~~~~~~rg~afV~F~~~e~A~~Al~--lng-~~l~g~~i~V~~  239 (405)
                      +.|||||||.+-++++|.+.|++.+ -|.+|.+.   .|..++||||||+|.+...|..|.+  ++| ..+.|..+.|.+
T Consensus       165 ~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdW  244 (506)
T KOG0117|consen  165 CRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDW  244 (506)
T ss_pred             ceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcceeec
Confidence            7899999999999999999999998 46777664   3466799999999999999999986  777 689999999999


Q ss_pred             ccCC
Q psy14559        240 STQS  243 (405)
Q Consensus       240 a~~~  243 (405)
                      +...
T Consensus       245 Aep~  248 (506)
T KOG0117|consen  245 AEPE  248 (506)
T ss_pred             cCcc
Confidence            9644

>KOG0109|consensus

Probab=99.82  E-value=2.9e-20  Score=173.87  Aligned_cols=147  Identities=21%  Similarity=0.285  Sum_probs=125.8

Q ss_pred             cEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEeecC
Q psy14559         12 KVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTPYN   91 (405)
Q Consensus        12 ~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~~~   91 (405)
                      -.|||||||..+++.+|+.||++||+|.+|.|+           ++||||..++...++.|++.++...+++..+-+...
T Consensus         3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv-----------KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaS   71 (346)
T KOG0109|consen    3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIV-----------KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEAS   71 (346)
T ss_pred             cchhccCCCcccchHHHHHHHHhhCceEeeeee-----------cccceEEeecccccHHHHhhcccceecceEEEEEec
Confidence            369999999999999999999999999999992           679999999999999999855555555544444321


Q ss_pred             CCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccCcEEEE
Q psy14559         92 SGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRTLVA  171 (405)
Q Consensus        92 ~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~rtvfV  171 (405)
                      ..                                                                    .+....+++|
T Consensus        72 ks--------------------------------------------------------------------Ksk~stkl~v   83 (346)
T KOG0109|consen   72 KS--------------------------------------------------------------------KSKASTKLHV   83 (346)
T ss_pred             cc--------------------------------------------------------------------cCCCcccccc
Confidence            10                                                                    0112568999


Q ss_pred             eCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCC
Q psy14559        172 INIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQS  243 (405)
Q Consensus       172 ~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~  243 (405)
                      |||.+.|+.+||+..|++||+|..|.|+      ++|+||.|.-.++|..|++ |||+.|.|++++|+.+.+.
T Consensus        84 gNis~tctn~ElRa~fe~ygpviecdiv------kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsr  150 (346)
T KOG0109|consen   84 GNISPTCTNQELRAKFEKYGPVIECDIV------KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSR  150 (346)
T ss_pred             CCCCccccCHHHhhhhcccCCceeeeee------cceeEEEEeeccchHHHHhcccccccccceeeeeeeccc
Confidence            9999999999999999999999999985      5699999999999999998 9999999999999999766

>KOG0123|consensus

Probab=99.78  E-value=1.5e-18  Score=173.74  Aligned_cols=166  Identities=17%  Similarity=0.291  Sum_probs=133.4

Q ss_pred             CcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccC-CccccceeEEee
Q psy14559         11 TKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTN-TVFIDRALVVTP   89 (405)
Q Consensus        11 ~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n-~~~~~~~~~vv~   89 (405)
                      ...|||+||+++++..+|.++|+.||+|.+|++ .++.+   + ++|| ||+|.++++|.+|+.+.| ..+.+..+.+-.
T Consensus        76 ~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv-~~~~~---g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~  149 (369)
T KOG0123|consen   76 PSLVFIKNLDESIDNKSLYDTFSEFGNILSCKV-ATDEN---G-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGL  149 (369)
T ss_pred             CceeeecCCCcccCcHHHHHHHHhhcCeeEEEE-EEcCC---C-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEee
Confidence            344999999999999999999999999999999 54442   3 7999 999999999999997555 455566666655


Q ss_pred             cCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccCcEE
Q psy14559         90 YNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRTL  169 (405)
Q Consensus        90 ~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~rtv  169 (405)
                      +....    ++      ..                               +...                  .-..-..+
T Consensus       150 ~~~~~----er------~~-------------------------------~~~~------------------~~~~~t~v  170 (369)
T KOG0123|consen  150 FERKE----ER------EA-------------------------------PLGE------------------YKKRFTNV  170 (369)
T ss_pred             ccchh----hh------cc-------------------------------cccc------------------hhhhhhhh
Confidence            43321    10      00                               0000                  00013479


Q ss_pred             EEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559        170 VAINIEESVSPQELVDFFQKVGTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST  241 (405)
Q Consensus       170 fV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~  241 (405)
                      ||.|++.+++++.|.++|+.+|.|.++.++.+ .+.+++|+||.|.+.++|..|+. |+|..+.|..+.|..++
T Consensus       171 ~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aq  244 (369)
T KOG0123|consen  171 YVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQ  244 (369)
T ss_pred             heeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhccCCcCCccceeecccc
Confidence            99999999999999999999999999999876 67799999999999999999999 99999999999998876

>KOG0124|consensus

Probab=99.78  E-value=1.5e-18  Score=166.48  Aligned_cols=174  Identities=13%  Similarity=0.221  Sum_probs=136.0

Q ss_pred             CcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEeec
Q psy14559         11 TKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTPY   90 (405)
Q Consensus        11 ~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~~   90 (405)
                      -|.||||.|++...|+.||.-|..||+|++|.+ .  -|..+++++|||||+|+-++.|+.|++-+|+.+++++-+.+--
T Consensus       113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInM-S--WDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgr  189 (544)
T KOG0124|consen  113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINM-S--WDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR  189 (544)
T ss_pred             hHheeeeeeEEEechHHHHhhccCCCCcceeec-c--cccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccC
Confidence            478999999999999999999999999999987 2  2556899999999999999999999987776666544332210


Q ss_pred             CCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccCcEEE
Q psy14559         91 NSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRTLV  170 (405)
Q Consensus        91 ~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~rtvf  170 (405)
                      ..                        ++|           ..  .+..|.-.                  +.-..-..||
T Consensus       190 Ps------------------------Nmp-----------QA--QpiID~vq------------------eeAk~fnRiY  214 (544)
T KOG0124|consen  190 PS------------------------NMP-----------QA--QPIIDMVQ------------------EEAKKFNRIY  214 (544)
T ss_pred             CC------------------------CCc-----------cc--chHHHHHH------------------HHHHhhheEE
Confidence            00                        000           00  00001000                  0011145799


Q ss_pred             EeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559        171 AINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       171 V~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~  242 (405)
                      |..+-++.++++|+..|+-||+|.+|.+.+.  .+..+||+|++|.+..+...|+. ||-..|+|.-|+|..+-.
T Consensus       215 VaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vT  289 (544)
T KOG0124|consen  215 VASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVT  289 (544)
T ss_pred             eeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccC
Confidence            9999999999999999999999999999776  34689999999999999999998 999999999999987743

>KOG0110|consensus

Probab=99.78  E-value=8.2e-19  Score=180.71  Aligned_cols=173  Identities=16%  Similarity=0.244  Sum_probs=136.3

Q ss_pred             EEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEeecCC
Q psy14559         13 VVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTPYNS   92 (405)
Q Consensus        13 tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~~~~   92 (405)
                      +|||+||++.+|.++|..+|...|.|.++.|....+......+.|||||+|.+.++|+.|++.+++..+++..+.+....
T Consensus       517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~  596 (725)
T KOG0110|consen  517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE  596 (725)
T ss_pred             hhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence            39999999999999999999999999999994333221234578999999999999999999888666666655554333


Q ss_pred             CCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccCcEEEEe
Q psy14559         93 GEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRTLVAI  172 (405)
Q Consensus        93 ~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~rtvfV~  172 (405)
                      .. +.          +                                   ..+ .          .....+...+|+|.
T Consensus       597 ~k-~~----------~-----------------------------------~~g-K----------~~~~kk~~tKIlVR  619 (725)
T KOG0110|consen  597 NK-PA----------S-----------------------------------TVG-K----------KKSKKKKGTKILVR  619 (725)
T ss_pred             Cc-cc----------c-----------------------------------ccc-c----------ccccccccceeeee
Confidence            10 00          0                                   000 0          00001114689999


Q ss_pred             CCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559        173 NIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       173 NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~  242 (405)
                      |||+..+..+++.+|+.||.+.+|+|+..  .+..+|||||+|-++.+|.+|+. |.++.|.||+|-++++++
T Consensus       620 NipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~  692 (725)
T KOG0110|consen  620 NIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKS  692 (725)
T ss_pred             ccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhcc
Confidence            99999999999999999999999999866  34579999999999999999998 999999999999999873

>PLN03120 nucleic acid binding protein; Provisional

Probab=99.78  E-value=1.2e-19  Score=170.70  Aligned_cols=150  Identities=18%  Similarity=0.226  Sum_probs=115.5

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeeccCCCC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQSIQ  245 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~~~~~  245 (405)
                      .++|||+|||+.+|+++|++||+.||+|.+|.|+.+. .++|||||+|.+.++|+.|+.|||..|.|+.|+|..+.....
T Consensus         4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~-~~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~~~~   82 (260)
T PLN03120          4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSEN-ERSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAEDYQL   82 (260)
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecC-CCCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccCCCC
Confidence            5799999999999999999999999999999998764 357999999999999999999999999999999999875533


Q ss_pred             CCCCCChHHHHHHHHHHHHHHHHhhhhhhhccCcccCcccccccCCCCCceEEEEEEEeeehhhHHHhhhCCCcceeeee
Q psy14559        246 KPEAKSNEAAQREIEEAMSRVKEAQNMISAAIDPVIGILSKDKKKSHSPVRHLVIVLIVVDVALDLALEIGDDLEVVVRD  325 (405)
Q Consensus       246 ~p~~~~~~~~~~e~~~~~k~~~~~~~~~s~~~ep~~~~~~~dk~~~~s~~~~~~~~~~~~d~~~~~al~~~~~~~~~~~~  325 (405)
                      ++........  .                 ...+..  ...-.+..+.-...|+.+|+.+|+++++|+++++.|.++.++
T Consensus        83 p~~~~~~~~~--~-----------------~~~~~~--~~~~~~a~~vva~mLAkGy~l~~dA~~kAk~fDekH~~ss~a  141 (260)
T PLN03120         83 PPEALAPLSS--N-----------------SPASGA--ESAVKKAEDVVSSMLAKGFILGKDAVNKAKAFDEKHQLTSTA  141 (260)
T ss_pred             Cccccccccc--c-----------------cCCCCc--cchhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhchHHHH
Confidence            3322110000  0                 000000  000001234556678899999999999999999999999999


Q ss_pred             eccccccccccc
Q psy14559        326 VGHVREEDQDHV  337 (405)
Q Consensus       326 ~g~v~~~~~~~~  337 (405)
                      ...|.++|++-+
T Consensus       142 ~a~v~~~d~k~g  153 (260)
T PLN03120        142 SAKVASLDKKIG  153 (260)
T ss_pred             HHHHHhhhhhcC
Confidence            888888887654

>KOG0146|consensus

Probab=99.77  E-value=6.7e-18  Score=156.36  Aligned_cols=77  Identities=18%  Similarity=0.323  Sum_probs=71.7

Q ss_pred             cCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559        165 IRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST  241 (405)
Q Consensus       165 ~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~  241 (405)
                      .+++|||-.||.+..+.||..+|-.||.|.+.++-.|  ++.+|+|+||.|.++.+++.||. |||..|+-++|+|+..+
T Consensus       284 eGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKR  363 (371)
T KOG0146|consen  284 EGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKR  363 (371)
T ss_pred             CcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcC
Confidence            4789999999999999999999999999999987443  88999999999999999999999 99999999999998865

>KOG0147|consensus

Probab=99.77  E-value=9.6e-19  Score=175.98  Aligned_cols=179  Identities=19%  Similarity=0.323  Sum_probs=143.5

Q ss_pred             CCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEe
Q psy14559          9 VKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVT   88 (405)
Q Consensus         9 ~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv   88 (405)
                      ...+|||+--|+-..++.+|.+||+.+|+|.+|+++..   ..+..++|+|||+|.+.+++..|+.+.+..+++-.++|.
T Consensus       177 Rd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~D---r~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq  253 (549)
T KOG0147|consen  177 RDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGD---RNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQ  253 (549)
T ss_pred             HhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeecc---ccchhhcceeEEEEecccchhhHhhhcCCcccCceeEec
Confidence            34689999999999999999999999999999999653   346789999999999999999999999999998888775


Q ss_pred             ecCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccCcE
Q psy14559         89 PYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRT  168 (405)
Q Consensus        89 ~~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~rt  168 (405)
                      ....      ++.. ....+..+.+++...|                                              -+.
T Consensus       254 ~sEa------eknr-~a~~s~a~~~k~~~~p----------------------------------------------~~r  280 (549)
T KOG0147|consen  254 LSEA------EKNR-AANASPALQGKGFTGP----------------------------------------------MRR  280 (549)
T ss_pred             ccHH------HHHH-HHhccccccccccccc----------------------------------------------hhh
Confidence            4211      1111 1111101100000000                                              123


Q ss_pred             EEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCC
Q psy14559        169 LVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQS  243 (405)
Q Consensus       169 vfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~  243 (405)
                      ||||||-+++++++|+..|+.||.|..|.++.|  +|.++||+||+|.+.++|.+|+. |||..|.|+.|+|......
T Consensus       281 l~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r  358 (549)
T KOG0147|consen  281 LYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTER  358 (549)
T ss_pred             hhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeee
Confidence            999999999999999999999999999999877  89999999999999999999987 9999999999999876544

>KOG0148|consensus

Probab=99.76  E-value=6.5e-18  Score=156.81  Aligned_cols=163  Identities=13%  Similarity=0.193  Sum_probs=113.9

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~  242 (405)
                      .--|||+.|...++-+.|++.|.+||+|.++++++|  ++++|||+||.|-+.++|++||. |||+-|++|.|+-.++.-
T Consensus        62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR  141 (321)
T KOG0148|consen   62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR  141 (321)
T ss_pred             ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence            346999999999999999999999999999999988  78999999999999999999999 999999999999998853


Q ss_pred             CCCCCCCCChHHHHHHHHHHHHHH--------------HHhhhhhhhccCcccCcccccccCCCCCceEEEEEEEeeehh
Q psy14559        243 SIQKPEAKSNEAAQREIEEAMSRV--------------KEAQNMISAAIDPVIGILSKDKKKSHSPVRHLVIVLIVVDVA  308 (405)
Q Consensus       243 ~~~~p~~~~~~~~~~e~~~~~k~~--------------~~~~~~~s~~~ep~~~~~~~dk~~~~s~~~~~~~~~~~~d~~  308 (405)
                      .   |....  ..+...++.+...              ...++.+...++|...  +.+-|--  +-.|++++-|..-.+
T Consensus       142 K---p~e~n--~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~--I~EVRvF--k~qGYaFVrF~tkEa  212 (321)
T KOG0148|consen  142 K---PSEMN--GKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGP--IQEVRVF--KDQGYAFVRFETKEA  212 (321)
T ss_pred             C---ccccC--CCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCc--ceEEEEe--cccceEEEEecchhh
Confidence            2   21111  0001111222111              0122222223333221  1111111  223567777888888


Q ss_pred             hHHHhhhCCCcceeee--eeccccccccccc
Q psy14559        309 LDLALEIGDDLEVVVR--DVGHVREEDQDHV  337 (405)
Q Consensus       309 ~~~al~~~~~~~~~~~--~~g~v~~~~~~~~  337 (405)
                      +.+||..-+..++.+.  +|-|-++-+.+-+
T Consensus       213 AahAIv~mNntei~G~~VkCsWGKe~~~~~~  243 (321)
T KOG0148|consen  213 AAHAIVQMNNTEIGGQLVRCSWGKEGDDGIN  243 (321)
T ss_pred             HHHHHHHhcCceeCceEEEEeccccCCCCCC
Confidence            9999999888888866  9999888444433

>KOG4205|consensus

Probab=99.75  E-value=8.2e-18  Score=163.49  Aligned_cols=171  Identities=13%  Similarity=0.170  Sum_probs=130.8

Q ss_pred             CCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEe
Q psy14559          9 VKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVT   88 (405)
Q Consensus         9 ~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv   88 (405)
                      .+.++|||++|++.+|++.|++.|++||+|.+|.+ +.  |..++++++|+||+|++.+.+..++....-.+-++.+-..
T Consensus         4 ~~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~v-m~--d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k   80 (311)
T KOG4205|consen    4 GESGKLFIGGLSWETTEESLREYFSQFGEVTDCVV-MR--DPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPK   80 (311)
T ss_pred             cCCcceeecCcCccccHHHHHHHhcccCceeeEEE-ec--cCCCCCcccccceecCCCcchheeecccccccCCccccce
Confidence            37899999999999999999999999999999999 44  4467999999999999999777665332111111111000


Q ss_pred             ecCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccCcE
Q psy14559         89 PYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRT  168 (405)
Q Consensus        89 ~~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~rt  168 (405)
                      .+..    .                                            .....            .. .....++
T Consensus        81 ~av~----r--------------------------------------------~~~~~------------~~-~~~~tkk   99 (311)
T KOG4205|consen   81 RAVS----R--------------------------------------------EDQTK------------VG-RHLRTKK   99 (311)
T ss_pred             eccC----c--------------------------------------------ccccc------------cc-cccceeE
Confidence            0000    0                                            00000            00 0002568


Q ss_pred             EEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeeccCC
Q psy14559        169 LVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQS  243 (405)
Q Consensus       169 vfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~~~  243 (405)
                      |||++||.++++++++++|.+||.|.++.++.|  +..++||+||+|.+.+++.+++...-+.|.|+.+.|..+...
T Consensus       100 iFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~~~gk~vevkrA~pk  176 (311)
T KOG4205|consen  100 IFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHDFNGKKVEVKRAIPK  176 (311)
T ss_pred             EEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecccceeeecCceeeEeeccch
Confidence            999999999999999999999999999988766  567899999999999999999998889999999999988644

>KOG0144|consensus

Probab=99.73  E-value=2.9e-17  Score=160.77  Aligned_cols=78  Identities=18%  Similarity=0.316  Sum_probs=71.4

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEE-ecc-CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRF-CTR-ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i-~~~-~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~  242 (405)
                      +..+||.+||.+.-+.+|-..|..||.|.+.++ +.+ ++-++.|+||.|++.-+|..||. |||..+++++++|+.+..
T Consensus       424 GanlfiyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~  503 (510)
T KOG0144|consen  424 GANLFIYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRD  503 (510)
T ss_pred             ccceeeeeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeec
Confidence            568999999999999999999999999999877 443 78899999999999999999999 999999999999998764


Q ss_pred             C
Q psy14559        243 S  243 (405)
Q Consensus       243 ~  243 (405)
                      .
T Consensus       504 ~  504 (510)
T KOG0144|consen  504 R  504 (510)
T ss_pred             c
Confidence            3

>KOG1548|consensus

Probab=99.68  E-value=1.7e-16  Score=151.92  Aligned_cols=177  Identities=19%  Similarity=0.273  Sum_probs=126.4

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeE--------EEEecc-CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeE
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNY--------IRFCTR-ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTL  235 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~--------i~i~~~-~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i  235 (405)
                      ...|||+|||.++|-+++.++|++||-|..        |+|.++ .|..+|-|.+.|...+++..|++ |++..|.|+.|
T Consensus       134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~  213 (382)
T KOG1548|consen  134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKKL  213 (382)
T ss_pred             CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcEE
Confidence            556999999999999999999999998865        566544 68899999999999999999999 99999999999


Q ss_pred             EEeeccCCC---CCCCCCChHHHHHHHHHHHHHHHHhhhhhhhccCcccCcccccccCCCCCceEEEEE--EE---eeeh
Q psy14559        236 QMFHSTQSI---QKPEAKSNEAAQREIEEAMSRVKEAQNMISAAIDPVIGILSKDKKKSHSPVRHLVIV--LI---VVDV  307 (405)
Q Consensus       236 ~V~~a~~~~---~~p~~~~~~~~~~e~~~~~k~~~~~~~~~s~~~ep~~~~~~~dk~~~~s~~~~~~~~--~~---~~d~  307 (405)
                      +|+.|+...   ..+..+.. .....    .++....++-.- .+-|+.     +. .++.+...-+++  .|   .++.
T Consensus       214 rVerAkfq~Kge~~~~~k~k-~k~~~----~kk~~k~q~k~~-dw~pd~-----~~-~sk~r~~~tVi~kn~Ftp~~~~~  281 (382)
T KOG1548|consen  214 RVERAKFQMKGEYDASKKEK-GKCKD----KKKLKKQQQKLL-DWRPDR-----DD-PSKARADRTVILKNMFTPEDFEK  281 (382)
T ss_pred             EEehhhhhhccCcCcccccc-ccccc----HHHHHHHHHhhc-ccCCCc-----cc-cccccCCcEEEeeecCCHHHhcc
Confidence            999997541   12222110 00001    111112111100 122221     11 223333333332  11   2566


Q ss_pred             hhHHHhhhCCCcceeeeeeccccc-cccccccceEEEEEecCcccccc
Q psy14559        308 ALDLALEIGDDLEVVVRDVGHVRE-EDQDHVVDVLCLVIVRDPHVARD  354 (405)
Q Consensus       308 ~~~~al~~~~~~~~~~~~~g~v~~-~~~~~~~~~~~~~~~~~~~~~~~  354 (405)
                      ..+..+++.+++...|.+||-|+. +.+|+||||+++|.|+++.||.-
T Consensus       282 ~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~  329 (382)
T KOG1548|consen  282 NPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQ  329 (382)
T ss_pred             CHHHHHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHH
Confidence            668899999999999999999999 99999999999999999999953

>KOG0105|consensus

Probab=99.68  E-value=7.2e-16  Score=136.09  Aligned_cols=173  Identities=16%  Similarity=0.213  Sum_probs=125.2

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      ...+++|||+|||.++.+.+|.+||.+||.|.+|.|+-.      ...-+||||+|+++.||+.|+..-+..-+++..+-
T Consensus         3 gr~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r------~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLR   76 (241)
T KOG0105|consen    3 GRNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR------PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLR   76 (241)
T ss_pred             CcccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC------CCCCCeeEEEecCccchhhhhhcccccccCcceEE
Confidence            457899999999999999999999999999999999321      33578999999999999999988888888877777


Q ss_pred             eecCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccCc
Q psy14559         88 TPYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRR  167 (405)
Q Consensus        88 v~~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~r  167 (405)
                      +++..+--+....      .+ ++..++.--.                    +.....+    |       .+..+  ..
T Consensus        77 VEfprggr~s~~~------~G-~y~gggrgGg--------------------g~gg~rg----p-------psrrS--e~  116 (241)
T KOG0105|consen   77 VEFPRGGRSSSDR------RG-SYSGGGRGGG--------------------GGGGRRG----P-------PSRRS--EY  116 (241)
T ss_pred             EEeccCCCccccc------cc-ccCCCCCCCC--------------------CCCcccC----C-------ccccc--ce
Confidence            7766542111000      00 0000000000                    0000000    0       11111  56


Q ss_pred             EEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeC
Q psy14559        168 TLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLK  231 (405)
Q Consensus       168 tvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~  231 (405)
                      .|.|.+||++-+|++|++..-+.|.|....+.+|     |.+.|+|...|+++-|+. |+.+.+.
T Consensus       117 RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-----g~GvV~~~r~eDMkYAvr~ld~~~~~  176 (241)
T KOG0105|consen  117 RVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-----GVGVVEYLRKEDMKYAVRKLDDQKFR  176 (241)
T ss_pred             eEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-----cceeeeeeehhhHHHHHHhhcccccc
Confidence            7999999999999999999999999998887544     479999999999999998 8776554

>PLN03121 nucleic acid binding protein; Provisional

Probab=99.67  E-value=4.5e-17  Score=151.14  Aligned_cols=148  Identities=16%  Similarity=0.138  Sum_probs=100.1

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeeccCCCC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQSIQ  245 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~~~~~  245 (405)
                      ..||||+||++.+|+++|++||++||+|.+|+|+++ +..++||||+|.++++++.|+.|||..|.|++|.|........
T Consensus         5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D-~et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~~y~~   83 (243)
T PLN03121          5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS-GEYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWGQYED   83 (243)
T ss_pred             ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC-CCcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCccccc
Confidence            679999999999999999999999999999999887 4556899999999999999999999999999999998765433


Q ss_pred             CCCCCChHHHHHHHHHHHHHHHHhhhhhhhccCcccCcccccccCCCCCceEEEEEEEeeehhhHHHhhhCCCcceee
Q psy14559        246 KPEAKSNEAAQREIEEAMSRVKEAQNMISAAIDPVIGILSKDKKKSHSPVRHLVIVLIVVDVALDLALEIGDDLEVVV  323 (405)
Q Consensus       246 ~p~~~~~~~~~~e~~~~~k~~~~~~~~~s~~~ep~~~~~~~dk~~~~s~~~~~~~~~~~~d~~~~~al~~~~~~~~~~  323 (405)
                      ++..-..+....+...  ....+.....+   .|..    .-.+...--..-++.+|+.+++++.+|.++++.|.++.
T Consensus        84 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~---~p~~----a~~~aq~Vv~tmLAkGyvLgkda~~KAkafDE~h~lss  152 (243)
T PLN03121         84 EFDFWNRPSWDTEDIS--THNYETNQFAS---TPGE----AVTVAQEVVKTMLAKGYVLGKDALSKAKAFDESHQVSA  152 (243)
T ss_pred             CcccccCccccccccc--cccccccccCC---Cchh----hHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCccH
Confidence            2221110000000000  00000000000   0000    00000111224566788899999999999999999985

>TIGR01659 sex-lethal sex-lethal family splicing factor

Probab=99.66  E-value=6.2e-16  Score=153.97  Aligned_cols=146  Identities=16%  Similarity=0.214  Sum_probs=105.1

Q ss_pred             cCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559        165 IRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST  241 (405)
Q Consensus       165 ~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~  241 (405)
                      ..++|||+|||+++|+++|+++|+.||+|.+|+|+.|  +++++|||||+|.+.++|..|+. |||..+.+++|+|.+++
T Consensus       106 ~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~  185 (346)
T TIGR01659       106 SGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYAR  185 (346)
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeeccc
Confidence            3789999999999999999999999999999999866  67899999999999999999998 99999999999999875


Q ss_pred             CCCCCCC-------CCChHHHHHHHHHHHHHHHHhhhhhhhccCcccCcccccccCCCCCceEEEEEEEeeehhhHHHhh
Q psy14559        242 QSIQKPE-------AKSNEAAQREIEEAMSRVKEAQNMISAAIDPVIGILSKDKKKSHSPVRHLVIVLIVVDVALDLALE  314 (405)
Q Consensus       242 ~~~~~p~-------~~~~~~~~~e~~~~~k~~~~~~~~~s~~~ep~~~~~~~dk~~~~s~~~~~~~~~~~~d~~~~~al~  314 (405)
                      .......       .......++++.+.+..+          -+....++.+|+.++++++  ++++.|.....+++||+
T Consensus       186 p~~~~~~~~~lfV~nLp~~vtee~L~~~F~~f----------G~V~~v~i~~d~~tg~~kG--~aFV~F~~~e~A~~Ai~  253 (346)
T TIGR01659       186 PGGESIKDTNLYVTNLPRTITDDQLDTIFGKY----------GQIVQKNILRDKLTGTPRG--VAFVRFNKREEAQEAIS  253 (346)
T ss_pred             ccccccccceeEEeCCCCcccHHHHHHHHHhc----------CCEEEEEEeecCCCCccce--EEEEEECCHHHHHHHHH
Confidence            3211100       001122233333333222          1122233445666666664  55555666666799999


Q ss_pred             hCCCccee
Q psy14559        315 IGDDLEVV  322 (405)
Q Consensus       315 ~~~~~~~~  322 (405)
                      ..++..+.
T Consensus       254 ~lng~~~~  261 (346)
T TIGR01659       254 ALNNVIPE  261 (346)
T ss_pred             HhCCCccC
Confidence            87776554

This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).

>KOG0110|consensus

Probab=99.66  E-value=2.3e-15  Score=155.46  Aligned_cols=206  Identities=21%  Similarity=0.290  Sum_probs=136.6

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      .+....++|+|||..+..++|...|..||+|..+-+ |. .       .-.++|+|.++.+|..|...++...+..+..+
T Consensus       382 ~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvll-p~-~-------G~~aiv~fl~p~eAr~Afrklaysr~k~~ply  452 (725)
T KOG0110|consen  382 ERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLL-PP-G-------GTGAIVEFLNPLEARKAFRKLAYSRFKSAPLY  452 (725)
T ss_pred             hhhcceeeeccCccccccHHHHHHhhcccccceeec-Cc-c-------cceeeeeecCccchHHHHHHhchhhhccCccc
Confidence            445688999999999999999999999999999944 51 1       23499999999999999988888877777777


Q ss_pred             eecCCCC-CchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCC--CcccccCCcccccCCCCCCCCCCCCCCCccccc
Q psy14559         88 TPYNSGE-IPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPP--NQVISTHDPVLVQHGLPQYPPLPITYDTKKIEE  164 (405)
Q Consensus        88 v~~~~~~-~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~  164 (405)
                      .+|.... .+...++..+......      .+..++.   .-...  .+.....++......       .  . ......
T Consensus       453 le~aP~dvf~~~pka~~~~~e~~~------~~ee~~~---Er~s~~d~~v~eD~d~te~ss~-------a--~-~a~~~~  513 (725)
T KOG0110|consen  453 LEWAPEDVFTEDPKADDLSAESRS------KMEENPS---ERVSAEDGQVEEDKDPTEESSL-------A--R-VAEDEE  513 (725)
T ss_pred             cccChhhhccCCcccccccccccc------ccccCcc---eecccccccccccCCccccccc-------h--h-hhhccc
Confidence            7766541 1111111111000000      0000000   00000  000001111010000       0  0 000111


Q ss_pred             cCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc-CC----CCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEe
Q psy14559        165 IRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR-EN----DTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMF  238 (405)
Q Consensus       165 ~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~-~~----~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~  238 (405)
                      ...+|||.||++++|.++|...|...|.|.++.|... .+    .+.|||||+|.+.++|++|++ |+|+.|.|+.|.|+
T Consensus       514 ~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk  593 (725)
T KOG0110|consen  514 TETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELK  593 (725)
T ss_pred             cchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEE
Confidence            1223999999999999999999999999999998543 22    256999999999999999999 99999999999999


Q ss_pred             ecc
Q psy14559        239 HST  241 (405)
Q Consensus       239 ~a~  241 (405)
                      .+.
T Consensus       594 ~S~  596 (725)
T KOG0110|consen  594 ISE  596 (725)
T ss_pred             ecc
Confidence            987

>PLN03134 glycine-rich RNA-binding protein 4; Provisional

Probab=99.65  E-value=1.9e-15  Score=132.48  Aligned_cols=77  Identities=17%  Similarity=0.343  Sum_probs=72.7

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~  242 (405)
                      .++|||+|||+++++++|+++|++||.|.++.++.+  +++++|||||+|.+.++|+.|+. |||..|.|++|+|+++..
T Consensus        34 ~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~~  113 (144)
T PLN03134         34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAND  113 (144)
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCCc
Confidence            679999999999999999999999999999999765  67899999999999999999998 999999999999999863

>KOG4206|consensus

Probab=99.63  E-value=2.4e-14  Score=130.77  Aligned_cols=209  Identities=17%  Similarity=0.257  Sum_probs=135.8

Q ss_pred             cCCCCCcEEEEcCCCCCCCHHHHHH----HhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHh-ccCCcc
Q psy14559          6 VAPVKTKVVQVANIAPQATRDQMQT----LFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQH-LTNTVF   80 (405)
Q Consensus         6 ~~~~~~~tLfVgNLp~~vTeedLr~----lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~-~~n~~~   80 (405)
                      .+-.++.||||.||+..+..++|+.    ||++||+|.+|....      +.+.+|.|||.|.+.+.|..|+. +.|..|
T Consensus         4 ~~~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k------t~KmRGQA~VvFk~~~~As~A~r~l~gfpF   77 (221)
T KOG4206|consen    4 MSVNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK------TPKMRGQAFVVFKETEAASAALRALQGFPF   77 (221)
T ss_pred             cccCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC------CCCccCceEEEecChhHHHHHHHHhcCCcc
Confidence            3444556999999999999999998    999999999998832      47789999999999999999985 667788


Q ss_pred             ccceeEEeecCCCC-CchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCC
Q psy14559         81 IDRALVVTPYNSGE-IPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDT  159 (405)
Q Consensus        81 ~~~~~~vv~~~~~~-~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~  159 (405)
                      +|+.+.+-.+.... +-...       .+ .+.......+...................   ....+.++.  .   .  
T Consensus        78 ygK~mriqyA~s~sdii~~~-------~~-~~v~~~~k~~~~~~~~~~~~~~~ng~~~~---~~~~~~p~p--~---~--  139 (221)
T KOG4206|consen   78 YGKPMRIQYAKSDSDIIAQA-------PG-TFVEKEKKINGEILARIKQPLDTNGHFYN---MNRMNLPPP--F---L--  139 (221)
T ss_pred             cCchhheecccCccchhhcc-------Cc-eeccccCccccccccccCCcccccccccc---cccccCCCC--c---c--
Confidence            88888765543321 00000       00 00000000000000000000000000000   000111110  0   0  


Q ss_pred             ccccccCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeC-CeeEEE
Q psy14559        160 KKIEEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLK-GKTLQM  237 (405)
Q Consensus       160 ~~~~~~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~-g~~i~V  237 (405)
                      ........++|+.|||.+++.+.|..+|.+|+--..++++.   ...+.|||+|.+...+..|.. ++|..+. ...+.|
T Consensus       140 ~~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~---~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i  216 (221)
T KOG4206|consen  140 AQMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIP---PRSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQI  216 (221)
T ss_pred             ccCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEecc---CCCceeEEecchhhhhHHHhhhhccceeccCceEEe
Confidence            11111257899999999999999999999999999998853   235799999999999999998 9998877 778888


Q ss_pred             eecc
Q psy14559        238 FHST  241 (405)
Q Consensus       238 ~~a~  241 (405)
                      .+++
T Consensus       217 ~~a~  220 (221)
T KOG4206|consen  217 TFAK  220 (221)
T ss_pred             cccC
Confidence            7764

>TIGR01645 half-pint poly-U binding splicing factor, half-pint family

Probab=99.62  E-value=3.2e-15  Score=157.02  Aligned_cols=148  Identities=14%  Similarity=0.132  Sum_probs=107.2

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~  242 (405)
                      .++|||+|||+++++++|+++|++||.|.+|+++.|  +++++|||||+|.+.++|.+|+. |||..+.|+.|+|.+...
T Consensus       107 ~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~~  186 (612)
T TIGR01645       107 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN  186 (612)
T ss_pred             CCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccccc
Confidence            578999999999999999999999999999999766  78899999999999999999998 999999999999986542


Q ss_pred             CCC-CCCCC-----------------ChHHHHHHHHHHHHHHHHhhhhhhhccCcccCcccccccCCCCCceEEEEEEEe
Q psy14559        243 SIQ-KPEAK-----------------SNEAAQREIEEAMSRVKEAQNMISAAIDPVIGILSKDKKKSHSPVRHLVIVLIV  304 (405)
Q Consensus       243 ~~~-~p~~~-----------------~~~~~~~e~~~~~k~~~~~~~~~s~~~ep~~~~~~~dk~~~~s~~~~~~~~~~~  304 (405)
                      ... .+...                 ..+....++.          .+|+.-.+-...++.+|+..+++++++|+.  |.
T Consensus       187 ~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk----------~lFs~FG~I~svrl~~D~~tgksKGfGFVe--Fe  254 (612)
T TIGR01645       187 MPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIK----------SVFEAFGEIVKCQLARAPTGRGHKGYGFIE--YN  254 (612)
T ss_pred             ccccccccccccccccccceEEeecCCCCCCHHHHH----------HHHhhcCCeeEEEEEecCCCCCcCCeEEEE--EC
Confidence            210 00000                 0011112222          223322222233455666666666666654  55


Q ss_pred             eehhhHHHhhhCCCcceeeee
Q psy14559        305 VDVALDLALEIGDDLEVVVRD  325 (405)
Q Consensus       305 ~d~~~~~al~~~~~~~~~~~~  325 (405)
                      ....+++||+-.+++++.+++
T Consensus       255 ~~e~A~kAI~amNg~elgGr~  275 (612)
T TIGR01645       255 NLQSQSEAIASMNLFDLGGQY  275 (612)
T ss_pred             CHHHHHHHHHHhCCCeeCCeE
Confidence            666678999999999988774

In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.

>KOG1457|consensus

Probab=99.59  E-value=1.3e-14  Score=131.73  Aligned_cols=213  Identities=14%  Similarity=0.161  Sum_probs=126.8

Q ss_pred             cCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCcccccee
Q psy14559          6 VAPVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRAL   85 (405)
Q Consensus         6 ~~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~   85 (405)
                      ..++..+||||.+||.++...+|+.||..|--.+.+.|+.+.+  .....+.+|||.|.+.++|..|+++.|++.+|-..
T Consensus        29 ~~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk--~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~  106 (284)
T KOG1457|consen   29 DEPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSK--GDQVCKPVAFATFTSHQFALAAMNALNGVRFDPET  106 (284)
T ss_pred             ccccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccC--CCccccceEEEEecchHHHHHHHHHhcCeeecccc
Confidence            4477789999999999999999999999998889998866654  22335789999999999999999999998877433


Q ss_pred             EEe---ecCCCCCchHHHHHHHHhccCCCCCCCC-CCCCcccccccC-CCC-CcccccCCccc-----------------
Q psy14559         86 VVT---PYNSGEIPDEQRALEIAAQQQGPNSGEP-KLPAHVTNQIEG-VPP-NQVISTHDPVL-----------------  142 (405)
Q Consensus        86 ~vv---~~~~~~~~~e~ka~~l~~~~~g~~~~~~-~~~~~~~~~~~~-~~~-~~~~~~~dp~~-----------------  142 (405)
                      ...   +.+.... ..      .....+-.|+.. .+.....+..+- ... .......+|..                 
T Consensus       107 ~stLhiElAKSNt-K~------kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~  179 (284)
T KOG1457|consen  107 GSTLHIELAKSNT-KR------KRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTK  179 (284)
T ss_pred             CceeEeeehhcCc-cc------ccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccc
Confidence            221   1111100 00      000001111100 000000000000 000 00000000000                 


Q ss_pred             -----ccCCCCCCCCCCCCCCC-c---cccccCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEE
Q psy14559        143 -----VQHGLPQYPPLPITYDT-K---KIEEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEF  213 (405)
Q Consensus       143 -----~~~~~~~~p~~~~~~~~-~---~~~~~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F  213 (405)
                           +...+.  |+.....+. +   ..-....||||.||.++|||++|+.+|+.|--...++|..+.|  ...||++|
T Consensus       180 ~~~l~a~~~~~--P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g--~~vaf~~~  255 (284)
T KOG1457|consen  180 SEALSAPDSKA--PSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGG--MPVAFADF  255 (284)
T ss_pred             hhhhhhhhhcC--CcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCC--cceEeecH
Confidence                 000000  000000010 0   0111245899999999999999999999998777777755444  35899999


Q ss_pred             CCHHHHHHHHH-hCCceeC
Q psy14559        214 SDQACVIPALK-LNGTNLK  231 (405)
Q Consensus       214 ~~~e~A~~Al~-lng~~l~  231 (405)
                      ++.+.|..|+. |+|..|.
T Consensus       256 ~~~~~at~am~~lqg~~~s  274 (284)
T KOG1457|consen  256 EEIEQATDAMNHLQGNLLS  274 (284)
T ss_pred             HHHHHHHHHHHHhhcceec
Confidence            99999999998 9887653

>PF00076 RRM_1: RNA recognition motif

Probab=99.57  E-value=1.2e-14  Score=110.26  Aligned_cols=68  Identities=31%  Similarity=0.571  Sum_probs=64.5

Q ss_pred             EEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEE
Q psy14559        169 LVAINIEESVSPQELVDFFQKVGTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQ  236 (405)
Q Consensus       169 vfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~  236 (405)
                      |||+|||+++|+++|+++|++||.|..+.+..+ .+..+++|||+|.+.++|+.|+. |+|..++|+.|+
T Consensus         1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir   70 (70)
T PF00076_consen    1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR   70 (70)
T ss_dssp             EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred             cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence            799999999999999999999999999999774 77889999999999999999999 999999999985

(a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....

>KOG0147|consensus

Probab=99.56  E-value=1.7e-14  Score=145.56  Aligned_cols=212  Identities=16%  Similarity=0.217  Sum_probs=125.9

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      .++...||||||.+++|+++|+..|+.||.|+.|.+ +.  |.-+|.++|||||+|.+.++|.+|+.-+|++.+.+..+.
T Consensus       275 ~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l-~~--d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ik  351 (549)
T KOG0147|consen  275 TGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQL-TK--DSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIK  351 (549)
T ss_pred             ccchhhhhhcccccCchHHHHhhhccCcccceeeee-cc--ccccccccCcceEEEecHHHHHHHHHHhccceecCceEE
Confidence            445555999999999999999999999999999999 43  334799999999999999999999865555655555444


Q ss_pred             eecCCCCCchHHHHHHHHhc----cCCCCC--C-------------CCCCCCcccccccCCCCCccc---------ccCC
Q psy14559         88 TPYNSGEIPDEQRALEIAAQ----QQGPNS--G-------------EPKLPAHVTNQIEGVPPNQVI---------STHD  139 (405)
Q Consensus        88 v~~~~~~~~~e~ka~~l~~~----~~g~~~--~-------------~~~~~~~~~~~~~~~~~~~~~---------~~~d  139 (405)
                      |......+.....+......    ..|+..  +             +..+++.+.+.+..+......         ...+
T Consensus       352 V~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~  431 (549)
T KOG0147|consen  352 VSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVD  431 (549)
T ss_pred             EEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccC
Confidence            43222111100000000000    001100  0             011121111111111100000         0111


Q ss_pred             cccccCCCCCCCCCCCCCCCccccccCcEEEEe-----------CCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcE
Q psy14559        140 PVLVQHGLPQYPPLPITYDTKKIEEIRRTLVAI-----------NIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKY  208 (405)
Q Consensus       140 p~~~~~~~~~~p~~~~~~~~~~~~~~~rtvfV~-----------NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~  208 (405)
                      |......+.    +           ...++.+.           |+..++- +++.+-++++|+|..|.+   ...+-|+
T Consensus       432 p~~~~p~~~----i-----------~t~C~lL~nMFdpstete~n~d~eI~-edV~Eec~k~g~v~hi~v---d~ns~g~  492 (549)
T KOG0147|consen  432 PADASPAFD----I-----------PTQCLLLSNMFDPSTETEPNWDQEIR-EDVIEECGKHGKVCHIFV---DKNSAGC  492 (549)
T ss_pred             ccccccccC----C-----------ccHHHHHhhcCCcccccCcchhhHHH-HHHHHHHHhcCCeeEEEE---ccCCCce
Confidence            110000000    0           01122222           3344444 456666699999999988   3344599


Q ss_pred             EEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559        209 ALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST  241 (405)
Q Consensus       209 afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~  241 (405)
                      .||.|.+.+.|.+|+. |+|..|.|+.|+..+-.
T Consensus       493 VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~  526 (549)
T KOG0147|consen  493 VYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLP  526 (549)
T ss_pred             EEEecCcHHHHHHHHHHHhhhhhccceeEEEEee
Confidence            9999999999999998 99999999999988764

>KOG4211|consensus

Probab=99.53  E-value=2.3e-13  Score=135.83  Aligned_cols=173  Identities=19%  Similarity=0.215  Sum_probs=128.8

Q ss_pred             CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeE
Q psy14559          7 APVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALV   86 (405)
Q Consensus         7 ~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~   86 (405)
                      .......|.+.+|||++|++||.+||+.|+ |+++.+ +.    .+++.+|-|||+|.+++++++||+.+...+-.+-+-
T Consensus         6 e~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~-~r----~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIE   79 (510)
T KOG4211|consen    6 EGSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEI-PR----RNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIE   79 (510)
T ss_pred             CCCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEE-ec----cCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEE
Confidence            345677899999999999999999999986 577666 33    248889999999999999999999887777666665


Q ss_pred             EeecCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccC
Q psy14559         87 VTPYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIR  166 (405)
Q Consensus        87 vv~~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~  166 (405)
                      |.........-.                   +                 +...|+                  +  ....
T Consensus        80 Vf~~~~~e~d~~-------------------~-----------------~~~g~~------------------s--~~~d  103 (510)
T KOG4211|consen   80 VFTAGGAEADWV-------------------M-----------------RPGGPN------------------S--SAND  103 (510)
T ss_pred             EEccCCcccccc-------------------c-----------------cCCCCC------------------C--CCCC
Confidence            554322110000                   0                 000000                  0  0114


Q ss_pred             cEEEEeCCCCCCCHHHHHHHHhcCCCeeE-EEEecc-CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeecc
Q psy14559        167 RTLVAINIEESVSPQELVDFFQKVGTVNY-IRFCTR-ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHST  241 (405)
Q Consensus       167 rtvfV~NLp~~~tee~L~~~F~~~G~I~~-i~i~~~-~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~  241 (405)
                      ..|=+.+||+.||++||.+||+--=.+.. |.++.+ .+++.|-|||+|++++.|++||.-+...++-|-|.|-.+.
T Consensus       104 ~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~Ss  180 (510)
T KOG4211|consen  104 GVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRSS  180 (510)
T ss_pred             ceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehhH
Confidence            56888999999999999999996543333 445555 6778999999999999999999988889999999987763

>KOG4212|consensus

Probab=99.46  E-value=3e-12  Score=125.98  Aligned_cols=220  Identities=18%  Similarity=0.191  Sum_probs=137.1

Q ss_pred             CCCcEEEEcCCCCCCCHHHHHHHhc-cCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccc-cceeE
Q psy14559          9 VKTKVVQVANIAPQATRDQMQTLFG-YLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFI-DRALV   86 (405)
Q Consensus         9 ~~~~tLfVgNLp~~vTeedLr~lFs-~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~-~~~~~   86 (405)
                      ..+|.+||+|||+++.+.+|++||. +.|+|+-|.++.. .   .++++|+|.|+|+++|.+++|++.+|+... ++.++
T Consensus        42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D-~---~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~  117 (608)
T KOG4212|consen   42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD-E---SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELV  117 (608)
T ss_pred             cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc-c---CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEE
Confidence            3467899999999999999999995 5899999999653 2   488999999999999999999976666544 55555


Q ss_pred             EeecCCCCCchHHHHHHHH--hc-cCCCCCC-CCCCCCccccccc---C-----CCCC--------cccccCCc------
Q psy14559         87 VTPYNSGEIPDEQRALEIA--AQ-QQGPNSG-EPKLPAHVTNQIE---G-----VPPN--------QVISTHDP------  140 (405)
Q Consensus        87 vv~~~~~~~~~e~ka~~l~--~~-~~g~~~~-~~~~~~~~~~~~~---~-----~~~~--------~~~~~~dp------  140 (405)
                      +.+..++     +++..-.  .. +.++..+ ..+.--..++...   +     .++.        ....+.+.      
T Consensus       118 vKEd~d~-----q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~  192 (608)
T KOG4212|consen  118 VKEDHDE-----QRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSS  192 (608)
T ss_pred             EeccCch-----hhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccch
Confidence            5543332     2111100  00 0011100 0000000000000   0     0000        00000000      


Q ss_pred             ccccCCCCCCCCCCCCCCCccccccCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEE-eccCCCCCcEEEEEECCHHHH
Q psy14559        141 VLVQHGLPQYPPLPITYDTKKIEEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRF-CTRENDTNKYALVEFSDQACV  219 (405)
Q Consensus       141 ~~~~~~~~~~p~~~~~~~~~~~~~~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i-~~~~~~~rg~afV~F~~~e~A  219 (405)
                      +....+.+..-.-+-.. ..+  -...++||+||.+.+..+.|++.|.-.|+|..+.+ +.+.+.++|||.++|..+-.|
T Consensus       193 ~~~lfgl~~~Flr~~h~-f~p--Pl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpvea  269 (608)
T KOG4212|consen  193 NYNLFGLSASFLRSLHI-FSP--PLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEA  269 (608)
T ss_pred             hhhcccchhhhhhhccC-CCC--CccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHH
Confidence            00000100000000000 011  11568999999999999999999999999999998 566889999999999999999


Q ss_pred             HHHHH-hCCceeCCeeEEEeec
Q psy14559        220 IPALK-LNGTNLKGKTLQMFHS  240 (405)
Q Consensus       220 ~~Al~-lng~~l~g~~i~V~~a  240 (405)
                      -.|+. +++.-+..++..+...
T Consensus       270 vqaIsml~~~g~~~~~~~~Rl~  291 (608)
T KOG4212|consen  270 VQAISMLDRQGLFDRRMTVRLD  291 (608)
T ss_pred             HHHHHhhccCCCccccceeecc
Confidence            99998 8888777887766653

>KOG0125|consensus

Probab=99.45  E-value=3e-13  Score=128.97  Aligned_cols=80  Identities=21%  Similarity=0.328  Sum_probs=74.3

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCCC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQSI  244 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~~  244 (405)
                      .+.|+|+|||+...+-||+.+|++||+|.+|.|+-.+..+|||+||+|++.++|++|-. |+|..+.||+|.|..+....
T Consensus        96 pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATarV  175 (376)
T KOG0125|consen   96 PKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATARV  175 (376)
T ss_pred             CceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccchhh
Confidence            57899999999999999999999999999999987766789999999999999999998 99999999999999997654


Q ss_pred             C
Q psy14559        245 Q  245 (405)
Q Consensus       245 ~  245 (405)
                      .
T Consensus       176 ~  176 (376)
T KOG0125|consen  176 H  176 (376)
T ss_pred             c
Confidence            3

>PLN03134 glycine-rich RNA-binding protein 4; Provisional

Probab=99.45  E-value=5.4e-13  Score=117.01  Aligned_cols=82  Identities=11%  Similarity=0.149  Sum_probs=67.2

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      ....++|||+|||+++|+++|+++|++||+|.+|++. .  +..+++++|||||+|.+.++|+.|+..+|...+++..+.
T Consensus        31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~-~--d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~  107 (144)
T PLN03134         31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVI-V--DRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIR  107 (144)
T ss_pred             cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEE-e--cCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence            4456789999999999999999999999999999993 3  334688999999999999999999975555555555555


Q ss_pred             eecCC
Q psy14559         88 TPYNS   92 (405)
Q Consensus        88 v~~~~   92 (405)
                      +.+..
T Consensus       108 V~~a~  112 (144)
T PLN03134        108 VNPAN  112 (144)
T ss_pred             EEeCC
Confidence            55544

>PF14259 RRM_6: RNA recognition motif (a

Probab=99.44  E-value=5.3e-13  Score=101.82  Aligned_cols=68  Identities=29%  Similarity=0.580  Sum_probs=60.8

Q ss_pred             EEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEE
Q psy14559        169 LVAINIEESVSPQELVDFFQKVGTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQ  236 (405)
Q Consensus       169 vfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~  236 (405)
                      |||+|||+++++++|+++|+.||.|..+.+..+ .+.++|+|||+|.+.++|.+|+. ++|..++|+.|+
T Consensus         1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~   70 (70)
T PF14259_consen    1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR   70 (70)
T ss_dssp             EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred             CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence            799999999999999999999999999999654 46789999999999999999999 888999999874

k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....

>KOG0106|consensus

Probab=99.43  E-value=3.7e-13  Score=123.89  Aligned_cols=164  Identities=21%  Similarity=0.285  Sum_probs=121.1

Q ss_pred             cEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEeecC
Q psy14559         12 KVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTPYN   91 (405)
Q Consensus        12 ~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~~~   91 (405)
                      ..+|||+||+.+.+.+|..||..||.|.++.++           .+|+||+|.+..+|.-|++-.|+..+.+-..++.+.
T Consensus         2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk-----------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~   70 (216)
T KOG0106|consen    2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK-----------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHA   70 (216)
T ss_pred             CceeecccCCccchhHHHHHHhhccccccceee-----------cccceeccCchhhhhcccchhcCceecceeeeeecc
Confidence            468999999999999999999999999999881           578999999999999999866655554444666655


Q ss_pred             CCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccCcEEEE
Q psy14559         92 SGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRTLVA  171 (405)
Q Consensus        92 ~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~rtvfV  171 (405)
                      .+.-...         +.   ++++.-+                          ++..        ....-....+.++|
T Consensus        71 r~~~~~~---------g~---~~~g~r~--------------------------~~~~--------~~~~p~~s~~r~~~  104 (216)
T KOG0106|consen   71 RGKRRGR---------GR---PRGGDRR--------------------------SDSR--------RYRPPSRTHFRLIV  104 (216)
T ss_pred             ccccccc---------CC---CCCCCcc--------------------------chhh--------ccCCcccccceeee
Confidence            4310000         00   0000000                          0000        00000112567999


Q ss_pred             eCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEe
Q psy14559        172 INIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMF  238 (405)
Q Consensus       172 ~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~  238 (405)
                      -|++..+++.+|.+.|.++|.+....+      ..+++||+|...++|..|+. |+|..+.|+.|.+.
T Consensus       105 ~~~~~r~~~qdl~d~~~~~g~~~~~~~------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~  166 (216)
T KOG0106|consen  105 RNLSLRVSWQDLKDHFRPAGEVTYVDA------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVE  166 (216)
T ss_pred             ccchhhhhHHHHhhhhcccCCCchhhh------hccccceeehhhhhhhhcchhccchhhcCceeeec
Confidence            999999999999999999999854433      56899999999999999999 99999999999983

>KOG0121|consensus

Probab=99.42  E-value=3.7e-13  Score=112.51  Aligned_cols=76  Identities=17%  Similarity=0.312  Sum_probs=69.7

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST  241 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~  241 (405)
                      ++|||||||++.++||+|.++|++||+|..|.+-.|  +..+-|||||+|-+.++|..|++ +||+.|..++|+|.+..
T Consensus        36 S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~  114 (153)
T KOG0121|consen   36 SCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA  114 (153)
T ss_pred             cceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence            689999999999999999999999999999977433  55688999999999999999999 99999999999998764

>KOG0126|consensus

Probab=99.41  E-value=4.9e-14  Score=124.29  Aligned_cols=78  Identities=18%  Similarity=0.341  Sum_probs=73.4

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~  242 (405)
                      ..-|||||||++.||.+|..+|++||+|++|.+++|  +|+++||||+.|+++.+...|+. |||..+.||.|+|.+...
T Consensus        35 sA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~~  114 (219)
T KOG0126|consen   35 SAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVSN  114 (219)
T ss_pred             ceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeeccc
Confidence            567999999999999999999999999999999887  89999999999999999999998 999999999999998754


Q ss_pred             C
Q psy14559        243 S  243 (405)
Q Consensus       243 ~  243 (405)
                      .
T Consensus       115 Y  115 (219)
T KOG0126|consen  115 Y  115 (219)
T ss_pred             c
Confidence            4

>PLN03213 repressor of silencing 3; Provisional

Probab=99.41  E-value=7.3e-13  Score=131.87  Aligned_cols=74  Identities=24%  Similarity=0.425  Sum_probs=69.9

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCH--HHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQ--ACVIPALK-LNGTNLKGKTLQMFHST  241 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~--e~A~~Al~-lng~~l~g~~i~V~~a~  241 (405)
                      ..+||||||++++++++|+..|+.||.|.++.|++.+|  ||||||+|.+.  .++.+|+. |||..++|+.|+|..++
T Consensus        10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAK   86 (759)
T PLN03213         10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAK   86 (759)
T ss_pred             ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeecc
Confidence            56899999999999999999999999999999997777  99999999987  78999998 99999999999999987

>KOG0131|consensus

Probab=99.39  E-value=2.4e-12  Score=113.81  Aligned_cols=152  Identities=18%  Similarity=0.218  Sum_probs=101.7

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~  242 (405)
                      ..|||||||+..++++-|.++|-++|+|.++.++.|  +...+||||++|.++|+|+-|++ ||...|-|++|+|..+..
T Consensus         9 d~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas~   88 (203)
T KOG0131|consen    9 DATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKASA   88 (203)
T ss_pred             CceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEeccc
Confidence            679999999999999999999999999999999887  66789999999999999999999 999999999999998862


Q ss_pred             CCCCC-CCCC--hHHHHHHHHHHHHHHHHhhhhhhhcc-CcccCcccccccCCCCCceEEEEEEEeeehhhHHHhhhCCC
Q psy14559        243 SIQKP-EAKS--NEAAQREIEEAMSRVKEAQNMISAAI-DPVIGILSKDKKKSHSPVRHLVIVLIVVDVALDLALEIGDD  318 (405)
Q Consensus       243 ~~~~p-~~~~--~~~~~~e~~~~~k~~~~~~~~~s~~~-ep~~~~~~~dk~~~~s~~~~~~~~~~~~d~~~~~al~~~~~  318 (405)
                      ..... -...  ......++++.+-+  .+-+.+..-+ .|.   ..+|..++.+++.++.  ++.+-.+..+||+-.++
T Consensus        89 ~~~nl~vganlfvgNLd~~vDe~~L~--dtFsafG~l~~~P~---i~rd~~tg~~~~~g~i--~~~sfeasd~ai~s~ng  161 (203)
T KOG0131|consen   89 HQKNLDVGANLFVGNLDPEVDEKLLY--DTFSAFGVLISPPK---IMRDPDTGNPKGFGFI--NYASFEASDAAIGSMNG  161 (203)
T ss_pred             ccccccccccccccccCcchhHHHHH--HHHHhccccccCCc---ccccccCCCCCCCeEE--echhHHHHHHHHHHhcc
Confidence            21111 0000  00011122222211  1111121111 121   2344455555555544  56666667788887666


Q ss_pred             cceeee
Q psy14559        319 LEVVVR  324 (405)
Q Consensus       319 ~~~~~~  324 (405)
                      .=+..|
T Consensus       162 q~l~nr  167 (203)
T KOG0131|consen  162 QYLCNR  167 (203)
T ss_pred             chhcCC
Confidence            655544

>KOG0121|consensus

Probab=99.39  E-value=6.8e-13  Score=110.92  Aligned_cols=83  Identities=17%  Similarity=0.305  Sum_probs=73.0

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      ...++|||||||+..+|||+|.+||+.||+|..|.+ .-++  .+...-|||||+|-+.++|+.|++..|..-++..++.
T Consensus        33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiM-GLdr--~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir  109 (153)
T KOG0121|consen   33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIM-GLDR--FKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIR  109 (153)
T ss_pred             HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEe-cccc--CCcCccceEEEEEecchhHHHHHHHhccCccccccee
Confidence            456899999999999999999999999999999987 4444  3456799999999999999999999888888888888


Q ss_pred             eecCCC
Q psy14559         88 TPYNSG   93 (405)
Q Consensus        88 v~~~~~   93 (405)
                      +.|..|
T Consensus       110 ~D~D~G  115 (153)
T KOG0121|consen  110 IDWDAG  115 (153)
T ss_pred             eecccc
Confidence            888765

>smart00362 RRM_2 RNA recognition motif

Probab=99.38  E-value=3e-12  Score=95.89  Aligned_cols=71  Identities=28%  Similarity=0.508  Sum_probs=65.8

Q ss_pred             EEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEe
Q psy14559        168 TLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMF  238 (405)
Q Consensus       168 tvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~  238 (405)
                      +|||+|||..+++++|+++|++||.|..+.+..+.+.++|+|||+|.+.++|..|+. ++|..+.|++|.|+
T Consensus         1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~   72 (72)
T smart00362        1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE   72 (72)
T ss_pred             CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence            589999999999999999999999999999876556788999999999999999998 99999999998873

>PF00076 RRM_1: RNA recognition motif

Probab=99.37  E-value=1.9e-12  Score=97.99  Aligned_cols=65  Identities=22%  Similarity=0.356  Sum_probs=56.3

Q ss_pred             EEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCcccc
Q psy14559         14 VQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFID   82 (405)
Q Consensus        14 LfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~   82 (405)
                      |||+|||+++|+++|+++|++||.|..+++...    ..+..+++|||+|.+.++|+.|+...++..++
T Consensus         1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~----~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~   65 (70)
T PF00076_consen    1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN----SSGKSKGYAFVEFESEEDAEKALEELNGKKIN   65 (70)
T ss_dssp             EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE----TTSSEEEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred             cEEcCCCCcCCHHHHHHHHHHhhhccccccccc----ccccccceEEEEEcCHHHHHHHHHHcCCCEEC
Confidence            799999999999999999999999999999543    35778999999999999999999844444443

(a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....

>KOG0149|consensus

Probab=99.37  E-value=1e-12  Score=120.53  Aligned_cols=77  Identities=14%  Similarity=0.195  Sum_probs=70.1

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeeccC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~~  242 (405)
                      -.+||||||+|.++.+.|+++|++||+|.+..++.|  ++++|||+||+|.+.++|.+|++--.-.|+||+-.+..+..
T Consensus        12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~l   90 (247)
T KOG0149|consen   12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLASL   90 (247)
T ss_pred             EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchhhh
Confidence            468999999999999999999999999999988766  88999999999999999999999666889999988887754

>PLN03121 nucleic acid binding protein; Provisional

Probab=99.37  E-value=2.4e-12  Score=119.82  Aligned_cols=78  Identities=19%  Similarity=0.338  Sum_probs=69.4

Q ss_pred             CCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEee
Q psy14559         10 KTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTP   89 (405)
Q Consensus        10 ~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~   89 (405)
                      ...||||+||++.+|+++|++||++||+|.+|+|...      +..+++|||+|.++++++.|+.+++..+.+..+.+.+
T Consensus         4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D------~et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~   77 (243)
T PLN03121          4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS------GEYACTAYVTFKDAYALETAVLLSGATIVDQRVCITR   77 (243)
T ss_pred             CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC------CCcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEe
Confidence            4589999999999999999999999999999999432      3457899999999999999999999999999988888


Q ss_pred             cCCC
Q psy14559         90 YNSG   93 (405)
Q Consensus        90 ~~~~   93 (405)
                      +.+-
T Consensus        78 ~~~y   81 (243)
T PLN03121         78 WGQY   81 (243)
T ss_pred             Cccc
Confidence            7653

>PLN03120 nucleic acid binding protein; Provisional

Probab=99.37  E-value=2.1e-12  Score=121.88  Aligned_cols=77  Identities=23%  Similarity=0.463  Sum_probs=67.4

Q ss_pred             CcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEeec
Q psy14559         11 TKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTPY   90 (405)
Q Consensus        11 ~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~~   90 (405)
                      .++|||+|||+.+|+++|+++|+.||+|++|.| +.++     .++|||||+|.++++|+.|+.+++..+.++.+.+.+.
T Consensus         4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I-~~d~-----~~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a   77 (260)
T PLN03120          4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEM-QSEN-----ERSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPA   77 (260)
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-eecC-----CCCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEec
Confidence            589999999999999999999999999999999 4332     2579999999999999999998888888888888775


Q ss_pred             CCC
Q psy14559         91 NSG   93 (405)
Q Consensus        91 ~~~   93 (405)
                      .+.
T Consensus        78 ~~~   80 (260)
T PLN03120         78 EDY   80 (260)
T ss_pred             cCC
Confidence            543

>KOG0107|consensus

Probab=99.34  E-value=2.4e-12  Score=113.13  Aligned_cols=75  Identities=23%  Similarity=0.355  Sum_probs=69.3

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQS  243 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~  243 (405)
                      .++||||||+..+++.||...|..||+|.+|-|..   .+.|||||+|+++.+|+.|+. |||..|.|..|+|+.+...
T Consensus        10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvAr---nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~   85 (195)
T KOG0107|consen   10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVAR---NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGR   85 (195)
T ss_pred             CceEEeccCCCCcchHHHHHHHHhcCcceeEEEee---cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCC
Confidence            67899999999999999999999999999997743   567999999999999999999 9999999999999998644

>KOG0114|consensus

Probab=99.32  E-value=1.1e-11  Score=100.05  Aligned_cols=75  Identities=27%  Similarity=0.364  Sum_probs=69.1

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST  241 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~  241 (405)
                      .+.|||.|||+++|.++..++|++||.|..|++-. +...+|-|||.|++..+|.+|+. |+|..+.++.+.|-+.+
T Consensus        18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG~-~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq   93 (124)
T KOG0114|consen   18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGN-TKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ   93 (124)
T ss_pred             heeEEEecCCccccHHHHHHHhhcccceEEEEecC-ccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence            78999999999999999999999999999999933 23468999999999999999999 99999999999999876

>KOG1190|consensus

Probab=99.32  E-value=5.8e-11  Score=116.28  Aligned_cols=187  Identities=23%  Similarity=0.281  Sum_probs=129.8

Q ss_pred             CcEEEEcCCCC-CCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhc-cCCccccceeEEe
Q psy14559         11 TKVVQVANIAP-QATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHL-TNTVFIDRALVVT   88 (405)
Q Consensus        11 ~~tLfVgNLp~-~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~-~n~~~~~~~~~vv   88 (405)
                      +.+|.|.||.. .+|++-|..+|+-||+|..|+|+...        +-.|.|+|.+...|+.|++. .+-.++|+.+.+.
T Consensus       297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk--------kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt  368 (492)
T KOG1190|consen  297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK--------KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVT  368 (492)
T ss_pred             ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC--------CcceeeeecchhHHHHHHHHhhcceecCceEEEe
Confidence            78999999986 58999999999999999999995432        34599999999999999964 5556777777766


Q ss_pred             ecCCC--CCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccC
Q psy14559         89 PYNSG--EIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIR  166 (405)
Q Consensus        89 ~~~~~--~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~  166 (405)
                      .....  .+|.+..      ...|+...-.              ...++.+..|..+.... .+|             ..
T Consensus       369 ~SKH~~vqlp~egq------~d~glT~dy~--------------~spLhrfkkpgsKN~~n-i~P-------------ps  414 (492)
T KOG1190|consen  369 LSKHTNVQLPREGQ------EDQGLTKDYG--------------NSPLHRFKKPGSKNYQN-IFP-------------PS  414 (492)
T ss_pred             eccCccccCCCCCC------ccccccccCC--------------CCchhhccCcccccccc-cCC-------------ch
Confidence            54432  1222110      0001111000              01112222222211110 001             15


Q ss_pred             cEEEEeCCCCCCCHHHHHHHHhcCCCe-eEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCe-eEEEeeccC
Q psy14559        167 RTLVAINIEESVSPQELVDFFQKVGTV-NYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGK-TLQMFHSTQ  242 (405)
Q Consensus       167 rtvfV~NLp~~~tee~L~~~F~~~G~I-~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~-~i~V~~a~~  242 (405)
                      .++...|+|.+++||+|+..|..-|-. .-..+   -++.+.+|++.+.+.|+|..|+. ++.+.+++. .|+|.++++
T Consensus       415 atlHlsnip~svsee~lk~~f~~~g~~vkafkf---f~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks  490 (492)
T KOG1190|consen  415 ATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKF---FQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS  490 (492)
T ss_pred             hheeeccCCcccchhHHHHhhhcCCceEEeeee---cCCCcceeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence            689999999999999999999988754 44444   34567899999999999999987 999999866 889999875

>KOG0122|consensus

Probab=99.30  E-value=9.3e-12  Score=114.69  Aligned_cols=77  Identities=19%  Similarity=0.325  Sum_probs=73.1

Q ss_pred             cCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559        165 IRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST  241 (405)
Q Consensus       165 ~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~  241 (405)
                      +..+|-|.||+.++++++|+++|.+||.|..+.|.+|  +|.+||||||+|.+.++|.+|+. |||+-+..--|+|++++
T Consensus       188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk  267 (270)
T KOG0122|consen  188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK  267 (270)
T ss_pred             ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence            4678999999999999999999999999999999766  89999999999999999999999 99999999999999987

>PF14259 RRM_6: RNA recognition motif (a

Probab=99.28  E-value=1.3e-11  Score=94.06  Aligned_cols=66  Identities=26%  Similarity=0.418  Sum_probs=55.4

Q ss_pred             EEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccc
Q psy14559         14 VQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDR   83 (405)
Q Consensus        14 LfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~   83 (405)
                      |||+|||+++|+++|+++|+.||.|..+++... +  . +..+++|||+|.+.++|..|+..++...+++
T Consensus         1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~-~--~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g   66 (70)
T PF14259_consen    1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKN-K--D-GQSRGFAFVEFSSEEDAKRALELLNGKEIDG   66 (70)
T ss_dssp             EEEESSTTT--HHHHHHHCTTSSBEEEEEEEES-T--T-SSEEEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred             CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEee-e--c-cccCCEEEEEeCCHHHHHHHHHHCCCcEECC
Confidence            799999999999999999999999999999543 2  2 6789999999999999999998887554444

k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....

>KOG0113|consensus

Probab=99.27  E-value=2.4e-11  Score=114.84  Aligned_cols=80  Identities=20%  Similarity=0.354  Sum_probs=74.3

Q ss_pred             ccCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q psy14559        164 EIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHS  240 (405)
Q Consensus       164 ~~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a  240 (405)
                      ..-+||||+-|+++++|..|+..|+.||+|+.|+|+.+  +|+++|||||+|++.-++..|.+ .+|..|.|+.|-|..-
T Consensus        99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE  178 (335)
T KOG0113|consen   99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE  178 (335)
T ss_pred             CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence            34689999999999999999999999999999999877  89999999999999999999998 9999999999999876


Q ss_pred             cCC
Q psy14559        241 TQS  243 (405)
Q Consensus       241 ~~~  243 (405)
                      ...
T Consensus       179 RgR  181 (335)
T KOG0113|consen  179 RGR  181 (335)
T ss_pred             ccc
Confidence            544

>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]

Probab=99.26  E-value=8.3e-11  Score=110.30  Aligned_cols=143  Identities=19%  Similarity=0.240  Sum_probs=97.3

Q ss_pred             CcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCC-ccccceeEEee
Q psy14559         11 TKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNT-VFIDRALVVTP   89 (405)
Q Consensus        11 ~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~-~~~~~~~~vv~   89 (405)
                      .++|||+|||+.+|+++|+++|..||.|..+.+ ..+  ..++.++|||||+|.+.+++..|+..+++ .+.++.+.+..
T Consensus       115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~-~~d--~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~  191 (306)
T COG0724         115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRL-VRD--RETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQK  191 (306)
T ss_pred             CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEe-eec--cccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeec
Confidence            599999999999999999999999999999999 433  25688999999999999999999987774 45555555443


Q ss_pred             cCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccCcEE
Q psy14559         90 YNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRTL  169 (405)
Q Consensus        90 ~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~rtv  169 (405)
                      ......+...        .          ...        .        .. ........        ...........+
T Consensus       192 ~~~~~~~~~~--------~----------~~~--------~--------~~-~~~~~~~~--------~~~~~~~~~~~~  228 (306)
T COG0724         192 AQPASQPRSE--------L----------SNN--------L--------DA-SFAKKLSR--------GKALLLEKSDNL  228 (306)
T ss_pred             cccccccccc--------c----------ccc--------c--------ch-hhhccccc--------ccccccccccee
Confidence            2210000000        0          000        0        00 00000000        000111225689


Q ss_pred             EEeCCCCCCCHHHHHHHHhcCCCeeEEEEe
Q psy14559        170 VAINIEESVSPQELVDFFQKVGTVNYIRFC  199 (405)
Q Consensus       170 fV~NLp~~~tee~L~~~F~~~G~I~~i~i~  199 (405)
                      +++|++..++..++...|..+|.+....+.
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (306)
T COG0724         229 YVGNLPLKTAEEELADLFKSRGDIVRASLP  258 (306)
T ss_pred             eccccccccchhHHHHhccccccceeeecc
Confidence            999999999999999999999999777664

>smart00360 RRM RNA recognition motif

Probab=99.26  E-value=2.8e-11  Score=90.15  Aligned_cols=68  Identities=29%  Similarity=0.535  Sum_probs=62.4

Q ss_pred             EeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEe
Q psy14559        171 AINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMF  238 (405)
Q Consensus       171 V~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~  238 (405)
                      |+|||..+++++|+++|++||.|..+.+..+  ++.++|+|||+|.+.++|..|+. ++|..++|+.|+|+
T Consensus         1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~   71 (71)
T smart00360        1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK   71 (71)
T ss_pred             CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence            5799999999999999999999999998655  46789999999999999999998 99999999998873

>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]

Probab=99.26  E-value=2.6e-11  Score=113.72  Aligned_cols=76  Identities=28%  Similarity=0.524  Sum_probs=72.1

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST  241 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~  241 (405)
                      .++|||+|||+++++++|.++|.+||.|..+.+..+  ++.++|||||+|.+.++|..|+. ++|..|.|++|.|..+.
T Consensus       115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~  193 (306)
T COG0724         115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ  193 (306)
T ss_pred             CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence            589999999999999999999999999999999765  68999999999999999999999 99999999999999975

>KOG1548|consensus

Probab=99.25  E-value=8.6e-10  Score=106.27  Aligned_cols=195  Identities=12%  Similarity=0.124  Sum_probs=126.1

Q ss_pred             CcEEEEcCCCCCCCHHHHHHHhccCCceE--------EEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCcccc
Q psy14559         11 TKVVQVANIAPQATRDQMQTLFGYLGKVE--------DLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFID   82 (405)
Q Consensus        11 ~~tLfVgNLp~~vTeedLr~lFs~~G~I~--------~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~   82 (405)
                      +..|||.|||.++|-+++.++|++||-|.        .|+||....    |+.+|=|.+.|...+++..|+++++..-+.
T Consensus       134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~----G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r  209 (382)
T KOG1548|consen  134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ----GKLKGDALCCYIKRESVELAIKILDEDELR  209 (382)
T ss_pred             CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC----CCccCceEEEeecccHHHHHHHHhCccccc
Confidence            45699999999999999999999999985        367866543    788999999999999999999877655444


Q ss_pred             ceeEEeecCCCCCchHHHHHHHHhccCCCCC-CCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCcc
Q psy14559         83 RALVVTPYNSGEIPDEQRALEIAAQQQGPNS-GEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKK  161 (405)
Q Consensus        83 ~~~~vv~~~~~~~~~e~ka~~l~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~  161 (405)
                      +..+.|.-+.-...++            +.+ +....+.....           +.........+|.+--      +...
T Consensus       210 g~~~rVerAkfq~Kge------------~~~~~k~k~k~~~~k-----------k~~k~q~k~~dw~pd~------~~~s  260 (382)
T KOG1548|consen  210 GKKLRVERAKFQMKGE------------YDASKKEKGKCKDKK-----------KLKKQQQKLLDWRPDR------DDPS  260 (382)
T ss_pred             CcEEEEehhhhhhccC------------cCcccccccccccHH-----------HHHHHHHhhcccCCCc------cccc
Confidence            4444443222100000            000 00000000000           0000001111111100      0111


Q ss_pred             ccccCcEEEEeCCCC----CCC-------HHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCce
Q psy14559        162 IEEIRRTLVAINIEE----SVS-------PQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTN  229 (405)
Q Consensus       162 ~~~~~rtvfV~NLp~----~~t-------ee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~  229 (405)
                      .....+||.+.|+=.    ..+       +++|++-.++||.|..|.+..  ..+.|.+.|.|.+.++|..|++ |+|..
T Consensus       261 k~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d--~hPdGvvtV~f~n~eeA~~ciq~m~GR~  338 (382)
T KOG1548|consen  261 KARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYD--RHPDGVVTVSFRNNEEADQCIQTMDGRW  338 (382)
T ss_pred             cccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEec--cCCCceeEEEeCChHHHHHHHHHhcCee
Confidence            122367999998732    333       356777799999999998853  4578999999999999999999 99999


Q ss_pred             eCCeeEEEeec
Q psy14559        230 LKGKTLQMFHS  240 (405)
Q Consensus       230 l~g~~i~V~~a  240 (405)
                      |.||.|.-+..
T Consensus       339 fdgRql~A~i~  349 (382)
T KOG1548|consen  339 FDGRQLTASIW  349 (382)
T ss_pred             ecceEEEEEEe
Confidence            99999987665

>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability

Probab=99.24  E-value=6.7e-11  Score=88.98  Aligned_cols=72  Identities=32%  Similarity=0.550  Sum_probs=65.5

Q ss_pred             EEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEee
Q psy14559        168 TLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFH  239 (405)
Q Consensus       168 tvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~  239 (405)
                      +|||+|||+.+++++|+++|+.||.|..+.+..+ .+.++|+|||+|.+.++|..|+. +++..+.|+.+.|.+
T Consensus         1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~   74 (74)
T cd00590           1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF   74 (74)
T ss_pred             CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence            4899999999999999999999999999998754 34678999999999999999998 999999999998863

This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).

>KOG0124|consensus

Probab=99.23  E-value=2.6e-11  Score=117.12  Aligned_cols=75  Identities=17%  Similarity=0.270  Sum_probs=70.8

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHS  240 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a  240 (405)
                      -+.||||.|.+++.|+.|+..|..||+|++|.+..|  +++.+|||||+|+-+|.|+.|++ |||..++||.|+|...
T Consensus       113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrP  190 (544)
T KOG0124|consen  113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP  190 (544)
T ss_pred             hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCC
Confidence            368999999999999999999999999999999777  78999999999999999999999 9999999999999854

>KOG0111|consensus

Probab=99.23  E-value=9e-12  Score=113.02  Aligned_cols=78  Identities=21%  Similarity=0.350  Sum_probs=74.5

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~  242 (405)
                      +||||||+|..++++.-|...|=.||.|.+|.++.|  +++.||||||+|...|+|..|+. ||+..|.||.|+|.+++.
T Consensus        10 KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~AkP   89 (298)
T KOG0111|consen   10 KRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAKP   89 (298)
T ss_pred             ceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecCC
Confidence            899999999999999999999999999999999877  67899999999999999999998 999999999999999975


Q ss_pred             C
Q psy14559        243 S  243 (405)
Q Consensus       243 ~  243 (405)
                      .
T Consensus        90 ~   90 (298)
T KOG0111|consen   90 E   90 (298)
T ss_pred             c
Confidence            5

>KOG4207|consensus

Probab=99.23  E-value=1.4e-11  Score=110.97  Aligned_cols=76  Identities=25%  Similarity=0.394  Sum_probs=72.2

Q ss_pred             cEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559        167 RTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       167 rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~  242 (405)
                      .+|-|-||.+.++.++|+.+|++||.|-+|.|+.|  ++.++|||||-|....+|+.|+. |+|..|.|+.|.|+.++-
T Consensus        14 ~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ary   92 (256)
T KOG4207|consen   14 TSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMARY   92 (256)
T ss_pred             eeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhhc
Confidence            47999999999999999999999999999999987  78899999999999999999999 999999999999998863

>KOG0120|consensus

Probab=99.17  E-value=9.5e-11  Score=119.82  Aligned_cols=185  Identities=15%  Similarity=0.270  Sum_probs=138.2

Q ss_pred             ccccCCCCCcEEEEcCCCCCCCHHHHHHHhccC-----------Cc-eEEEEEeeccCCCCCCccccEEEEEecchhhHH
Q psy14559          3 VDTVAPVKTKVVQVANIAPQATRDQMQTLFGYL-----------GK-VEDLRLYPIARDVSIPVQSRICYVKFFDEKCVG   70 (405)
Q Consensus         3 ~~~~~~~~~~tLfVgNLp~~vTeedLr~lFs~~-----------G~-I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~   70 (405)
                      ++.......+.++|+|+|+.++++.+-.+|..-           |+ |..+.+         ...+++||++|.+.++|.
T Consensus       167 ~~~~~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~---------n~~~nfa~ie~~s~~~at  237 (500)
T KOG0120|consen  167 MDSQATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQL---------NLEKNFAFIEFRSISEAT  237 (500)
T ss_pred             cCcchhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeee---------cccccceeEEecCCCchh
Confidence            445556778999999999999999999999764           33 677766         346899999999999999


Q ss_pred             HHHhccCCccccceeEEeecCCC-CCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCC
Q psy14559         71 ISQHLTNTVFIDRALVVTPYNSG-EIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQ  149 (405)
Q Consensus        71 ~Al~~~n~~~~~~~~~vv~~~~~-~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~  149 (405)
                      .++..+...|-+....+....+. ..+.-.                        ..+.     +          ....+ 
T Consensus       238 ~~~~~~~~~f~g~~~~~~r~~d~~~~p~~~------------------------~~~~-----~----------~~~~~-  277 (500)
T KOG0120|consen  238 EAMALDGIIFEGRPLKIRRPHDYQPVPGIT------------------------LSPS-----Q----------LGKVG-  277 (500)
T ss_pred             hhhcccchhhCCCCceecccccccCCccch------------------------hhhc-----c----------ccccC-
Confidence            99988877777766655432221 100000                        0000     0          00000 


Q ss_pred             CCCCCCCCCCccccccCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hC
Q psy14559        150 YPPLPITYDTKKIEEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LN  226 (405)
Q Consensus       150 ~p~~~~~~~~~~~~~~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-ln  226 (405)
                           .............++||+|||...++.+++++.+.||.+....++.+  +|.++||||.+|.++.-...|+. ||
T Consensus       278 -----~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLn  352 (500)
T KOG0120|consen  278 -----LLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLN  352 (500)
T ss_pred             -----CcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccc
Confidence                 00011122233678999999999999999999999999999998766  56899999999999999999999 99


Q ss_pred             CceeCCeeEEEeecc
Q psy14559        227 GTNLKGKTLQMFHST  241 (405)
Q Consensus       227 g~~l~g~~i~V~~a~  241 (405)
                      |..+++++|.|+.+.
T Consensus       353 Gm~lgd~~lvvq~A~  367 (500)
T KOG0120|consen  353 GMQLGDKKLVVQRAI  367 (500)
T ss_pred             hhhhcCceeEeehhh
Confidence            999999999999884

>KOG0149|consensus

Probab=99.17  E-value=5.4e-11  Score=109.27  Aligned_cols=75  Identities=13%  Similarity=0.185  Sum_probs=64.0

Q ss_pred             CCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559         10 KTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus        10 ~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      ...+||||||+|.++.+.|+++|++||+|++..++.   |..+++++|||||.|++.++|..|++--|-+.-+|...|
T Consensus        11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvit---d~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNc   85 (247)
T KOG0149|consen   11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVIT---DKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANC   85 (247)
T ss_pred             eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEe---ccCCccccceeeEEeecHHHHHHHhcCCCCccccccccc
Confidence            446799999999999999999999999999998843   557899999999999999999999987766555554443

>KOG0114|consensus

Probab=99.16  E-value=1.2e-10  Score=94.17  Aligned_cols=78  Identities=17%  Similarity=0.238  Sum_probs=64.4

Q ss_pred             CCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEe
Q psy14559          9 VKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVT   88 (405)
Q Consensus         9 ~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv   88 (405)
                      -.++.|||+|||+++|.|++.++|.+||.|..|+| ..     +...+|.|||.|++..+|.+|+..+++..++..-.++
T Consensus        16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRi-G~-----~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~v   89 (124)
T KOG0114|consen   16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRI-GN-----TKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVV   89 (124)
T ss_pred             hhheeEEEecCCccccHHHHHHHhhcccceEEEEe-cC-----ccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEE
Confidence            34689999999999999999999999999999999 22     3456999999999999999999766666665555555


Q ss_pred             ecCC
Q psy14559         89 PYNS   92 (405)
Q Consensus        89 ~~~~   92 (405)
                      ..+.
T Consensus        90 lyyq   93 (124)
T KOG0114|consen   90 LYYQ   93 (124)
T ss_pred             EecC
Confidence            5444

>KOG0108|consensus

Probab=99.16  E-value=6.7e-11  Score=120.12  Aligned_cols=77  Identities=23%  Similarity=0.419  Sum_probs=73.2

Q ss_pred             cEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCC
Q psy14559        167 RTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQS  243 (405)
Q Consensus       167 rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~  243 (405)
                      +.|||||+|+++++++|.++|+..|.|.+++++.|  +|+++||||++|.+.+.+..|++ |||..+.||+|+|.++...
T Consensus        19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~   98 (435)
T KOG0108|consen   19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR   98 (435)
T ss_pred             cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence            78999999999999999999999999999999866  88999999999999999999999 9999999999999998643

>KOG0105|consensus

Probab=99.16  E-value=6.5e-11  Score=104.97  Aligned_cols=77  Identities=23%  Similarity=0.357  Sum_probs=69.7

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQS  243 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~  243 (405)
                      .++|||||||.++.+.+|+++|.+||.|..|.|....+ ...||||+|+++.+|+.|+. -+|..+.|-.|+|+++...
T Consensus         6 ~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g-~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg   83 (241)
T KOG0105|consen    6 SRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPG-PPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG   83 (241)
T ss_pred             cceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCC-CCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence            68999999999999999999999999999999854333 45799999999999999999 9999999999999998643

>KOG0122|consensus

Probab=99.14  E-value=1.3e-10  Score=107.24  Aligned_cols=82  Identities=16%  Similarity=0.210  Sum_probs=74.4

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      ...+++|.|.|||.+++|++|++||.+||.|..|.|. .  |..+|.++|||||.|.+.++|..|+..+|+.=++.-++.
T Consensus       186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvyla-r--dK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILr  262 (270)
T KOG0122|consen  186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLA-R--DKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILR  262 (270)
T ss_pred             CCccceeEEecCccccChhHHHHHhhccCccceeEEE-E--ccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEE
Confidence            4467899999999999999999999999999999993 3  456899999999999999999999999999988888888


Q ss_pred             eecCC
Q psy14559         88 TPYNS   92 (405)
Q Consensus        88 v~~~~   92 (405)
                      ++|..
T Consensus       263 vEwsk  267 (270)
T KOG0122|consen  263 VEWSK  267 (270)
T ss_pred             EEecC
Confidence            88865

>PF13893 RRM_5: RNA recognition motif

Probab=99.13  E-value=3.1e-10  Score=82.96  Aligned_cols=55  Identities=29%  Similarity=0.542  Sum_probs=49.3

Q ss_pred             HHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q psy14559        183 LVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHS  240 (405)
Q Consensus       183 L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a  240 (405)
                      |.++|++||+|..+.+..+.   +++|||+|.+.++|..|+. |||..+.|++|+|++|
T Consensus         1 L~~~f~~fG~V~~i~~~~~~---~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a   56 (56)
T PF13893_consen    1 LYKLFSKFGEVKKIKIFKKK---RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA   56 (56)
T ss_dssp             HHHHHTTTS-EEEEEEETTS---TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred             ChHHhCCcccEEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence            68899999999999985433   6899999999999999998 9999999999999875

(a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....

>KOG1190|consensus

Probab=99.12  E-value=2.7e-09  Score=104.74  Aligned_cols=217  Identities=18%  Similarity=0.251  Sum_probs=128.0

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHH-hccCCccccceeE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQ-HLTNTVFIDRALV   86 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al-~~~n~~~~~~~~~   86 (405)
                      +..--.+.|.|+-+-+|-|-|..+|+.||.|..|.-+.+..       .=.|.|+|.+.+.|+.|. .+.+.-.+++++.
T Consensus       147 ~n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn-------~FQALvQy~d~~sAq~AK~aLdGqnIyngcCt  219 (492)
T KOG1190|consen  147 PNPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKNN-------GFQALVQYTDAVSAQAAKLALDGQNIYNGCCT  219 (492)
T ss_pred             CceeEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEeccc-------chhhhhhccchhhHHHHHHhccCCcccCceeE
Confidence            33446688999999999999999999999999986644332       334999999999999985 4555544444443


Q ss_pred             -EeecCCC-----CCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCc
Q psy14559         87 -VTPYNSG-----EIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTK  160 (405)
Q Consensus        87 -vv~~~~~-----~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~  160 (405)
                       -+.+..-     ++-. .|......+.-..+-+.+.+.+.......+.+.....+..-|.....      ...  .+ .
T Consensus       220 LrId~Sklt~LnvKynn-dkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~------a~~--a~-~  289 (492)
T KOG1190|consen  220 LRIDFSKLTDLNVKYNN-DKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAG------ANA--AD-G  289 (492)
T ss_pred             EEeehhhcccceeeccc-cccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchh------hcc--cc-c
Confidence             3332211     0000 00000000000000000000000000000000000000000000000      000  00 1


Q ss_pred             cccc--cCcEEEEeCCCC-CCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEE
Q psy14559        161 KIEE--IRRTLVAINIEE-SVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQ  236 (405)
Q Consensus       161 ~~~~--~~rtvfV~NLp~-~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~  236 (405)
                      +.+.  ....|.|.||.. .+|.+-|..+|+-||.|..|+|....+   --|.|+|.+...|+.|+. |+|..+.|++|+
T Consensus       290 ~~~~~~~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk---d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lr  366 (492)
T KOG1190|consen  290 KIESPSANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK---DNALIQMSDGQQAQLAMEHLEGHKLYGKKLR  366 (492)
T ss_pred             ccccCCCceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC---cceeeeecchhHHHHHHHHhhcceecCceEE
Confidence            1111  146788998876 589999999999999999999965432   469999999999999999 999999999999


Q ss_pred             EeeccCCC
Q psy14559        237 MFHSTQSI  244 (405)
Q Consensus       237 V~~a~~~~  244 (405)
                      |.+++-..
T Consensus       367 vt~SKH~~  374 (492)
T KOG1190|consen  367 VTLSKHTN  374 (492)
T ss_pred             EeeccCcc
Confidence            99998653

>KOG4454|consensus

Probab=99.11  E-value=2e-11  Score=110.79  Aligned_cols=153  Identities=24%  Similarity=0.349  Sum_probs=123.1

Q ss_pred             ccccCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCcccc
Q psy14559          3 VDTVAPVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFID   82 (405)
Q Consensus         3 ~~~~~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~   82 (405)
                      |.+.+....+||||+|+...+||+-|.++|-+-|+|..|.| ++.+|   ++.+ ||||.|.++-++..|+.++|+.-+.
T Consensus         1 mgaaaae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~i-p~~~d---~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~   75 (267)
T KOG4454|consen    1 MGAAAAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGI-PSGQD---QEQK-FAYVFFPNENSVQLAGQLENGDDLE   75 (267)
T ss_pred             CCCCCcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeC-CCCcc---CCCc-eeeeecccccchhhhhhhcccchhc
Confidence            45667788999999999999999999999999999999999 77654   3344 9999999999999999887764332


Q ss_pred             ceeEEeecCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccc
Q psy14559         83 RALVVTPYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKI  162 (405)
Q Consensus        83 ~~~~vv~~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~  162 (405)
                      ..                                                                              
T Consensus        76 ~~------------------------------------------------------------------------------   77 (267)
T KOG4454|consen   76 ED------------------------------------------------------------------------------   77 (267)
T ss_pred             cc------------------------------------------------------------------------------
Confidence            11                                                                              


Q ss_pred             cccCcEEEEeC----CCCCCCHHHHHHHHhcCCCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEE
Q psy14559        163 EEIRRTLVAIN----IEESVSPQELVDFFQKVGTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQ  236 (405)
Q Consensus       163 ~~~~rtvfV~N----Lp~~~tee~L~~~F~~~G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~  236 (405)
                       +..++++.||    |...++++.+...|++.|.+..+++..+ +|.++.++|+++....+.-.++. ..+..+--+++.
T Consensus        78 -e~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~~~~~  156 (267)
T KOG4454|consen   78 -EEQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLELFQKKVT  156 (267)
T ss_pred             -hhhcccccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcccCcCCCCcc
Confidence             1144556666    7778899999999999999999999665 67889999999999999889987 677665555555


Q ss_pred             Eee
Q psy14559        237 MFH  239 (405)
Q Consensus       237 V~~  239 (405)
                      +.-
T Consensus       157 ~gg  159 (267)
T KOG4454|consen  157 IGG  159 (267)
T ss_pred             ccc
Confidence            443

>KOG0113|consensus

Probab=99.08  E-value=2.9e-10  Score=107.56  Aligned_cols=82  Identities=15%  Similarity=0.232  Sum_probs=74.9

Q ss_pred             CCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEe
Q psy14559          9 VKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVT   88 (405)
Q Consensus         9 ~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv   88 (405)
                      .+.+||||+-|+..++|..|+..|+.||+|+.|+|+.   ++.+++++|||||+|.++.+...|-+...+..+++..++|
T Consensus        99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~---d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~V  175 (335)
T KOG0113|consen   99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVR---DKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILV  175 (335)
T ss_pred             CccceeeeeeccccccHHHHHHHHHhcCcceeEEEee---ecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEE
Confidence            5789999999999999999999999999999999954   4468999999999999999999999888899999999998


Q ss_pred             ecCCC
Q psy14559         89 PYNSG   93 (405)
Q Consensus        89 ~~~~~   93 (405)
                      ...-+
T Consensus       176 DvERg  180 (335)
T KOG0113|consen  176 DVERG  180 (335)
T ss_pred             Eeccc
Confidence            87665

>KOG0107|consensus

Probab=99.05  E-value=4.2e-10  Score=99.17  Aligned_cols=77  Identities=16%  Similarity=0.213  Sum_probs=62.9

Q ss_pred             CCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEe
Q psy14559          9 VKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVT   88 (405)
Q Consensus         9 ~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv   88 (405)
                      +-.+.||||||+..+|+.||...|+.||+|.+|+| ..       ..-|||||+|+++.||+.|...+++..+.+..+-|
T Consensus         8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWv-Ar-------nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rV   79 (195)
T KOG0107|consen    8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWV-AR-------NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRV   79 (195)
T ss_pred             CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEE-ee-------cCCCceEEeccCcccHHHHHhhcCCccccCceEEE
Confidence            45789999999999999999999999999999999 22       24899999999999999999876665554444444


Q ss_pred             ecCCC
Q psy14559         89 PYNSG   93 (405)
Q Consensus        89 ~~~~~   93 (405)
                      +...+
T Consensus        80 E~S~G   84 (195)
T KOG0107|consen   80 ELSTG   84 (195)
T ss_pred             EeecC
Confidence            44443

>KOG0130|consensus

Probab=99.04  E-value=3.6e-10  Score=95.51  Aligned_cols=76  Identities=21%  Similarity=0.346  Sum_probs=71.5

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST  241 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~  241 (405)
                      +-.|||.++-+.+|++++.+.|..||+|+.+.+..|  +|..+|||+|+|++.+.|+.|+. +||..|.|.+|.|.++-
T Consensus        72 GwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~F  150 (170)
T KOG0130|consen   72 GWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCF  150 (170)
T ss_pred             eEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEE
Confidence            568999999999999999999999999999998644  88899999999999999999998 99999999999999875

>smart00362 RRM_2 RNA recognition motif

Probab=99.04  E-value=1e-09  Score=81.96  Aligned_cols=66  Identities=18%  Similarity=0.312  Sum_probs=55.6

Q ss_pred             EEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccc
Q psy14559         13 VVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDR   83 (405)
Q Consensus        13 tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~   83 (405)
                      +|||+|||..+++++|+++|+.||+|..+.+... .    +.++++|||+|.+.++|+.|+..++...+++
T Consensus         1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~-~----~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~   66 (72)
T smart00362        1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKD-T----GKSKGFAFVEFESEEDAEKAIEALNGTKLGG   66 (72)
T ss_pred             CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecC-C----CCCCceEEEEeCCHHHHHHHHHHhCCcEECC
Confidence            5899999999999999999999999999998432 1    5578999999999999999997666444433

>smart00361 RRM_1 RNA recognition motif

Probab=99.01  E-value=1.4e-09  Score=83.46  Aligned_cols=58  Identities=21%  Similarity=0.328  Sum_probs=51.3

Q ss_pred             HHHHHHHHh----cCCCeeEEE-Eecc--C--CCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEE
Q psy14559        180 PQELVDFFQ----KVGTVNYIR-FCTR--E--NDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQM  237 (405)
Q Consensus       180 ee~L~~~F~----~~G~I~~i~-i~~~--~--~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V  237 (405)
                      +++|+++|+    +||.|.++. +..+  +  +.++|||||+|.+.++|..|+. |||..+.|+.|++
T Consensus         2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~   69 (70)
T smart00361        2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA   69 (70)
T ss_pred             chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence            578999999    999999995 4332  4  7899999999999999999999 9999999999876

>KOG0109|consensus

Probab=98.98  E-value=8e-10  Score=104.29  Aligned_cols=71  Identities=24%  Similarity=0.381  Sum_probs=66.9

Q ss_pred             cEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCC
Q psy14559        167 RTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQS  243 (405)
Q Consensus       167 rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~  243 (405)
                      -+|||||||..+++.+|+.+|++||+|..|.|+      |.||||..++...++-|+. |+|..|+|..|+|+.+++.
T Consensus         3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv------KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK   74 (346)
T KOG0109|consen    3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIV------KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK   74 (346)
T ss_pred             cchhccCCCcccchHHHHHHHHhhCceEeeeee------cccceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence            369999999999999999999999999999985      5699999999999999999 9999999999999999865

>smart00360 RRM RNA recognition motif

Probab=98.97  E-value=2.2e-09  Score=79.71  Aligned_cols=64  Identities=25%  Similarity=0.392  Sum_probs=54.0

Q ss_pred             EcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCcccc
Q psy14559         16 VANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFID   82 (405)
Q Consensus        16 VgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~   82 (405)
                      |+|||..+++++|+++|+.||.|..+.+....   .++.++++|||+|.+.++|..|+..++...++
T Consensus         1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~---~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~   64 (71)
T smart00360        1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDK---DTGKSKGFAFVEFESEEDAEKALEALNGKELD   64 (71)
T ss_pred             CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCC---CCCCCCceEEEEeCCHHHHHHHHHHcCCCeeC
Confidence            68999999999999999999999999994432   25778999999999999999999766644333

>KOG4206|consensus

Probab=98.96  E-value=1.7e-09  Score=99.18  Aligned_cols=77  Identities=23%  Similarity=0.355  Sum_probs=70.3

Q ss_pred             CcEEEEeCCCCCCCHHHHHH----HHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q psy14559        166 RRTLVAINIEESVSPQELVD----FFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHS  240 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~----~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a  240 (405)
                      ..||||.||+..+..++|+.    +|++||+|.+|... .+.+.||-|||.|.+.+.|-.|+. |+|..|-|++++|++|
T Consensus         9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~-kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA   87 (221)
T KOG4206|consen    9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAF-KTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYA   87 (221)
T ss_pred             CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEec-CCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecc
Confidence            34999999999999999888    99999999999653 466789999999999999999998 9999999999999999


Q ss_pred             cCC
Q psy14559        241 TQS  243 (405)
Q Consensus       241 ~~~  243 (405)
                      ++.
T Consensus        88 ~s~   90 (221)
T KOG4206|consen   88 KSD   90 (221)
T ss_pred             cCc
Confidence            755

>KOG4212|consensus

Probab=98.96  E-value=1.6e-09  Score=107.03  Aligned_cols=76  Identities=30%  Similarity=0.425  Sum_probs=70.3

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHh-cCCCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQ-KVGTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST  241 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~-~~G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~  241 (405)
                      .|.+||.|||+++.|++|+++|. +.|+|.+|.+..| .+++||+|.|+|+++|.+++|++ ||.+.+.||+|.|+-..
T Consensus        44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~  122 (608)
T KOG4212|consen   44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH  122 (608)
T ss_pred             cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence            46799999999999999999997 7899999999666 89999999999999999999999 99999999999997643

>KOG0125|consensus

Probab=98.95  E-value=1.4e-09  Score=104.07  Aligned_cols=80  Identities=14%  Similarity=0.152  Sum_probs=65.9

Q ss_pred             cCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCcccccee
Q psy14559          6 VAPVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRAL   85 (405)
Q Consensus         6 ~~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~   85 (405)
                      .+....+.|+|+|||+...+.||+.+|.+||+|.+|.|+-.++     .+||||||.|++.+||++|-..+++..+.++.
T Consensus        91 ~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNER-----GSKGFGFVTmen~~dadRARa~LHgt~VEGRk  165 (376)
T KOG0125|consen   91 SSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNER-----GSKGFGFVTMENPADADRARAELHGTVVEGRK  165 (376)
T ss_pred             CCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccC-----CCCccceEEecChhhHHHHHHHhhcceeeceE
Confidence            3455679999999999999999999999999999999977654     47999999999999999998655555555555


Q ss_pred             EEeec
Q psy14559         86 VVTPY   90 (405)
Q Consensus        86 ~vv~~   90 (405)
                      +=|..
T Consensus       166 IEVn~  170 (376)
T KOG0125|consen  166 IEVNN  170 (376)
T ss_pred             EEEec
Confidence            54443

>KOG0126|consensus

Probab=98.95  E-value=2.8e-10  Score=100.73  Aligned_cols=84  Identities=14%  Similarity=0.291  Sum_probs=67.5

Q ss_pred             CCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCc-cccceeEEe
Q psy14559         10 KTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTV-FIDRALVVT   88 (405)
Q Consensus        10 ~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~-~~~~~~~vv   88 (405)
                      .+.-|||||||+..||.||-.+||+||+|.+|.++   +|..||+++||||..|++..+...|+.-+|++ ..++.+.|-
T Consensus        34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLi---RDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVD  110 (219)
T KOG0126|consen   34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLI---RDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVD  110 (219)
T ss_pred             cceEEEECCCcccccCCcEEEEeeccCceEEEEEE---ecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEee
Confidence            35679999999999999999999999999999994   46679999999999999999998998655555 455555554


Q ss_pred             ecCCCCCc
Q psy14559         89 PYNSGEIP   96 (405)
Q Consensus        89 ~~~~~~~~   96 (405)
                      ...+-..|
T Consensus       111 Hv~~Yk~p  118 (219)
T KOG0126|consen  111 HVSNYKKP  118 (219)
T ss_pred             ecccccCC
Confidence            44443333

>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability

Probab=98.95  E-value=4.6e-09  Score=78.81  Aligned_cols=68  Identities=24%  Similarity=0.354  Sum_probs=56.8

Q ss_pred             EEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccce
Q psy14559         13 VVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRA   84 (405)
Q Consensus        13 tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~   84 (405)
                      +|+|+|||+.+++++|+++|+.||.|..+.+.....    +..+++|||+|.+.++|..|+..++...+++.
T Consensus         1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~----~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~   68 (74)
T cd00590           1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKD----TKSKGFAFVEFEDEEDAEKALEALNGKELGGR   68 (74)
T ss_pred             CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCC----CCcceEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence            589999999999999999999999999999954322    25689999999999999999977666544433

This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).

>KOG4207|consensus

Probab=98.94  E-value=1.2e-09  Score=98.48  Aligned_cols=78  Identities=17%  Similarity=0.301  Sum_probs=68.9

Q ss_pred             CCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEee
Q psy14559         10 KTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTP   89 (405)
Q Consensus        10 ~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~   89 (405)
                      ...+|.|-||.+.+|.++|+.+|++||.|.+|.| |.  |.-+..++|||||.|.+..+|+.|+..+++.++|+..+-|.
T Consensus        12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyI-Pr--dr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq   88 (256)
T KOG4207|consen   12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYI-PR--DRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQ   88 (256)
T ss_pred             cceeEEecceeccCCHHHHHHHHHHhCcccceec-cc--ccccccccceeEEEeeecchHHHHHHhhcceeeccceeeeh
Confidence            3478999999999999999999999999999999 65  44788999999999999999999999888888877766554


Q ss_pred             c
Q psy14559         90 Y   90 (405)
Q Consensus        90 ~   90 (405)
                      .
T Consensus        89 ~   89 (256)
T KOG4207|consen   89 M   89 (256)
T ss_pred             h
Confidence            3

>KOG4205|consensus

Probab=98.94  E-value=9.4e-10  Score=107.39  Aligned_cols=78  Identities=14%  Similarity=0.247  Sum_probs=72.2

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeeccCC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQS  243 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~~~  243 (405)
                      .+++|||+|+|+++++.|+++|++||+|.+|.+++|  +++++||+||+|.+.+.+..++...-+.|.|+.|.+..+...
T Consensus         6 ~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~r   85 (311)
T KOG4205|consen    6 SGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVSR   85 (311)
T ss_pred             CcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccCc
Confidence            689999999999999999999999999999999887  778999999999999999999988788999999998888644

>PLN03213 repressor of silencing 3; Provisional

Probab=98.92  E-value=3.5e-09  Score=106.02  Aligned_cols=76  Identities=13%  Similarity=0.199  Sum_probs=62.5

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecch--hhHHHHHh-ccCCccccce
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDE--KCVGISQH-LTNTVFIDRA   84 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~--e~A~~Al~-~~n~~~~~~~   84 (405)
                      .....+||||||++.+|+++|+.+|+.||.|.+|.| +..    +|  +|||||+|.+.  .++..|+. +++..+-++.
T Consensus         7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEI-pRE----TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~   79 (759)
T PLN03213          7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEF-VRT----KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGR   79 (759)
T ss_pred             CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE-ecc----cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCce
Confidence            456689999999999999999999999999999999 422    34  99999999988  56889986 5566667777


Q ss_pred             eEEeec
Q psy14559         85 LVVTPY   90 (405)
Q Consensus        85 ~~vv~~   90 (405)
                      +.|-.+
T Consensus        80 LKVNKA   85 (759)
T PLN03213         80 LRLEKA   85 (759)
T ss_pred             eEEeec
Confidence            666543

>KOG0120|consensus

Probab=98.90  E-value=8.6e-09  Score=105.65  Aligned_cols=188  Identities=18%  Similarity=0.232  Sum_probs=122.5

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCcccc-ceeE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFID-RALV   86 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~-~~~~   86 (405)
                      +-....+||+|||...++++++++...||.+....+..   |..++-++||||-+|.+..-...|+...|++.++ ..++
T Consensus       286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~---d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lv  362 (500)
T KOG0120|consen  286 PDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVK---DSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLV  362 (500)
T ss_pred             ccccchhhhccCcCccCHHHHHHHHHhcccchhheeec---ccccccccceeeeeeeCCcchhhhhcccchhhhcCceeE
Confidence            33457899999999999999999999999999999943   3345789999999999999999999777766555 5555


Q ss_pred             EeecCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccC
Q psy14559         87 VTPYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIR  166 (405)
Q Consensus        87 vv~~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~  166 (405)
                      +.....+.....        ..      .. .   ..+++.+.+..         ....+..+                .
T Consensus       363 vq~A~~g~~~~~--------~~------~~-~---~~~~~~~i~~~---------~~q~~g~~----------------t  399 (500)
T KOG0120|consen  363 VQRAIVGASNAN--------VN------FN-I---SQSQVPGIPLL---------MTQMAGIP----------------T  399 (500)
T ss_pred             eehhhccchhcc--------cc------CC-c---cccccccchhh---------hcccCCCc----------------c
Confidence            544333310000        00      00 0   00001111100         00000000                0


Q ss_pred             cEEEEeCC--------CCCCCH--HHHHHHHhcCCCeeEEEEecc-----CCCCCcEEEEEECCHHHHHHHHH-hCCcee
Q psy14559        167 RTLVAINI--------EESVSP--QELVDFFQKVGTVNYIRFCTR-----ENDTNKYALVEFSDQACVIPALK-LNGTNL  230 (405)
Q Consensus       167 rtvfV~NL--------p~~~te--e~L~~~F~~~G~I~~i~i~~~-----~~~~rg~afV~F~~~e~A~~Al~-lng~~l  230 (405)
                      +.|...|+        ..++++  |+++.-+++||.|.+|.++.+     .....|-.||+|.+.++++.|+. |+|.+|
T Consensus       400 ~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF  479 (500)
T KOG0120|consen  400 EVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKF  479 (500)
T ss_pred             hhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCcee
Confidence            11111111        111222  567777889999999999765     22356778999999999999998 999999


Q ss_pred             CCeeEEEeecc
Q psy14559        231 KGKTLQMFHST  241 (405)
Q Consensus       231 ~g~~i~V~~a~  241 (405)
                      .||.+...+.-
T Consensus       480 ~nRtVvtsYyd  490 (500)
T KOG0120|consen  480 ANRTVVASYYD  490 (500)
T ss_pred             CCcEEEEEecC
Confidence            99999887753

>KOG0128|consensus

Probab=98.87  E-value=2.8e-10  Score=120.31  Aligned_cols=147  Identities=16%  Similarity=0.240  Sum_probs=123.4

Q ss_pred             CCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEee
Q psy14559         10 KTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTP   89 (405)
Q Consensus        10 ~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~   89 (405)
                      ..+++||+||++.+.+++|...|+.+|.++.+++. .  -+..++.+|+|||.|.+++++..|+.+....+++       
T Consensus       666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~-~--h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g-------  735 (881)
T KOG0128|consen  666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIV-I--HKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG-------  735 (881)
T ss_pred             HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHH-H--HhhccccccceeeEeecCCchhhhhhhhhhhhhh-------
Confidence            34689999999999999999999999999988873 1  2235778999999999999998888654332222       


Q ss_pred             cCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccCcEE
Q psy14559         90 YNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRTL  169 (405)
Q Consensus        90 ~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~rtv  169 (405)
                                                                                                  +..+
T Consensus       736 ----------------------------------------------------------------------------K~~v  739 (881)
T KOG0128|consen  736 ----------------------------------------------------------------------------KISV  739 (881)
T ss_pred             ----------------------------------------------------------------------------hhhh
Confidence                                                                                        3468


Q ss_pred             EEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559        170 VAINIEESVSPQELVDFFQKVGTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       170 fV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~  242 (405)
                      ||.|.|+..|.++|+.+|+.+|.+++.+++.. .|+++|.|||.|.+..++..+.. .++..+.-+.+.|+.++.
T Consensus       740 ~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp  814 (881)
T KOG0128|consen  740 AISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP  814 (881)
T ss_pred             heeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence            99999999999999999999999999987544 78999999999999999999987 888888888777777653

>KOG0129|consensus

Probab=98.81  E-value=4.8e-08  Score=98.86  Aligned_cols=155  Identities=21%  Similarity=0.287  Sum_probs=105.3

Q ss_pred             CCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeecc-CCCCCCcccc---EEEEEecchhhHHHHHhc----cCCccc
Q psy14559         10 KTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIA-RDVSIPVQSR---ICYVKFFDEKCVGISQHL----TNTVFI   81 (405)
Q Consensus        10 ~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~-~d~~~~~~~g---~aFV~F~~~e~A~~Al~~----~n~~~~   81 (405)
                      =.+.||||+||++++|+.|...|..||.+. |.+ |-. ......-.+|   |+|+-|+++.++..-+..    ....|+
T Consensus       258 ~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdW-P~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~yf  335 (520)
T KOG0129|consen  258 YSRKVFVGGLPWDITEAQINASFGQFGSVK-VDW-PGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNYYF  335 (520)
T ss_pred             cccceeecCCCccccHHHHHhhcccccceE-eec-CCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccceEE
Confidence            358899999999999999999999999954 445 311 1111122455   999999999998765531    112222


Q ss_pred             c--------ceeEEeecCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCC
Q psy14559         82 D--------RALVVTPYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPL  153 (405)
Q Consensus        82 ~--------~~~~vv~~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~  153 (405)
                      .        ..+.+++|.-.                                             |...-.         
T Consensus       336 ~vss~~~k~k~VQIrPW~la---------------------------------------------Ds~fv~---------  361 (520)
T KOG0129|consen  336 KVSSPTIKDKEVQIRPWVLA---------------------------------------------DSDFVL---------  361 (520)
T ss_pred             EEecCcccccceeEEeeEec---------------------------------------------cchhhh---------
Confidence            1        11111221110                                             000000         


Q ss_pred             CCCCCCccccccCcEEEEeCCCCCCCHHHHHHHHh-cCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH
Q psy14559        154 PITYDTKKIEEIRRTLVAINIEESVSPQELVDFFQ-KVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK  224 (405)
Q Consensus       154 ~~~~~~~~~~~~~rtvfV~NLp~~~tee~L~~~F~-~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~  224 (405)
                          +.+..-+.++|||||+||--++.++|..+|+ -||.|..+-|-.|  -+.++|-|=|+|.+..+-.+||.
T Consensus       362 ----d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIs  431 (520)
T KOG0129|consen  362 ----DHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAIS  431 (520)
T ss_pred             ----ccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHh
Confidence                0111112388999999999999999999999 7999999999554  45699999999999999999985

>KOG0415|consensus

Probab=98.79  E-value=8e-09  Score=99.81  Aligned_cols=78  Identities=14%  Similarity=0.286  Sum_probs=73.1

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~  242 (405)
                      .+-|||..|.+-+++++|.-+|+.||+|.+|.+++|  +|.+-.||||+|.+.+++++|.- |++..|.+++|+|.++++
T Consensus       239 eNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQS  318 (479)
T KOG0415|consen  239 ENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQS  318 (479)
T ss_pred             cceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhhh
Confidence            568999999999999999999999999999999877  88899999999999999999975 999999999999999975


Q ss_pred             C
Q psy14559        243 S  243 (405)
Q Consensus       243 ~  243 (405)
                      .
T Consensus       319 V  319 (479)
T KOG0415|consen  319 V  319 (479)
T ss_pred             h
Confidence            4

>KOG1456|consensus

Probab=98.76  E-value=9.8e-07  Score=86.13  Aligned_cols=221  Identities=16%  Similarity=0.173  Sum_probs=132.1

Q ss_pred             CCCCCcEEEEcCCC--CCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCc--ccc
Q psy14559          7 APVKTKVVQVANIA--PQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTV--FID   82 (405)
Q Consensus         7 ~~~~~~tLfVgNLp--~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~--~~~   82 (405)
                      +..++++|.++=|.  +.+|-+-|+.++..+|+|..|.|+.+ .       .-.|.|+|++.+.|+.|.+.+|+.  +-+
T Consensus       116 s~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk-n-------gVQAmVEFdsv~~AqrAk~alNGADIYsG  187 (494)
T KOG1456|consen  116 SATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK-N-------GVQAMVEFDSVEVAQRAKAALNGADIYSG  187 (494)
T ss_pred             CCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec-c-------ceeeEEeechhHHHHHHHhhccccccccc
Confidence            44556666665555  57999999999999999999999443 2       345999999999999999776653  334


Q ss_pred             ceeEEeecCCCC----CchHHHHHHHHhccC--CCCCCCCCCC----Cccc----ccccC-CCCCcccccCCcccccCCC
Q psy14559         83 RALVVTPYNSGE----IPDEQRALEIAAQQQ--GPNSGEPKLP----AHVT----NQIEG-VPPNQVISTHDPVLVQHGL  147 (405)
Q Consensus        83 ~~~~vv~~~~~~----~~~e~ka~~l~~~~~--g~~~~~~~~~----~~~~----~~~~~-~~~~~~~~~~dp~~~~~~~  147 (405)
                      ..-..++++...    ...+.-.+....+..  -+.+|....+    +...    .+-.| ........        ...
T Consensus       188 CCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~--------~~~  259 (494)
T KOG1456|consen  188 CCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGD--------RHG  259 (494)
T ss_pred             ceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccc--------cCC
Confidence            444445544321    111100011110110  1111111111    0000    00000 00000000        000


Q ss_pred             CCCCCCCCCCC---------CccccccCcEEEEeCCCCC-CCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHH
Q psy14559        148 PQYPPLPITYD---------TKKIEEIRRTLVAINIEES-VSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQA  217 (405)
Q Consensus       148 ~~~p~~~~~~~---------~~~~~~~~rtvfV~NLp~~-~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e  217 (405)
                      |+.++++...+         ...-...+.-+.|-+|... ++-+.|..+|-.||.|..|++++.   ..|-|.|++.+..
T Consensus       260 p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkT---k~gtamVemgd~~  336 (494)
T KOG1456|consen  260 PPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKT---KPGTAMVEMGDAY  336 (494)
T ss_pred             CCCCCCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeec---ccceeEEEcCcHH
Confidence            11111111000         0011122667899999985 677899999999999999999642   3567999999999


Q ss_pred             HHHHHHH-hCCceeCCeeEEEeeccCCCCC
Q psy14559        218 CVIPALK-LNGTNLKGKTLQMFHSTQSIQK  246 (405)
Q Consensus       218 ~A~~Al~-lng~~l~g~~i~V~~a~~~~~~  246 (405)
                      ++++|+. ||+..+.|.+|.|..+++....
T Consensus       337 aver~v~hLnn~~lfG~kl~v~~SkQ~~v~  366 (494)
T KOG1456|consen  337 AVERAVTHLNNIPLFGGKLNVCVSKQNFVS  366 (494)
T ss_pred             HHHHHHHHhccCccccceEEEeeccccccc
Confidence            9999999 9999999999999999877443

>KOG0153|consensus

Probab=98.74  E-value=2.4e-08  Score=96.44  Aligned_cols=77  Identities=21%  Similarity=0.289  Sum_probs=68.3

Q ss_pred             ccccCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH--hCCceeCCeeEEEee
Q psy14559        162 IEEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK--LNGTNLKGKTLQMFH  239 (405)
Q Consensus       162 ~~~~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~--lng~~l~g~~i~V~~  239 (405)
                      .+..-.||||+||...+++.+|+++|.+||+|.++++.    ..+++|||+|.+.++|+.|..  +|-..++|.+|+|.+
T Consensus       224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~----~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~W  299 (377)
T KOG0153|consen  224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRIL----PRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKW  299 (377)
T ss_pred             cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEee----cccccceeeehhhHHHHHHHHhhcceeeecceEEEEEe
Confidence            34446799999999999999999999999999999984    246799999999999999986  888899999999998


Q ss_pred             ccC
Q psy14559        240 STQ  242 (405)
Q Consensus       240 a~~  242 (405)
                      +..
T Consensus       300 g~~  302 (377)
T KOG0153|consen  300 GRP  302 (377)
T ss_pred             CCC
Confidence            764

>KOG0112|consensus

Probab=98.70  E-value=1.5e-08  Score=107.95  Aligned_cols=160  Identities=17%  Similarity=0.286  Sum_probs=119.2

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      ...++|||+|||+..+++.+|+-.|..+|.|.+|.|...    ..++...||||.|.+...+-.|...+....++.    
T Consensus       369 ~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP----~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~----  440 (975)
T KOG0112|consen  369 FRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTP----HIKTESAYAFVSLLNTDMTPSAKFEESGPLIGN----  440 (975)
T ss_pred             hhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccC----CCCcccchhhhhhhccccCcccchhhcCCcccc----
Confidence            456899999999999999999999999999999999321    245667899999999885554432221111110    


Q ss_pred             eecCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccCc
Q psy14559         88 TPYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRR  167 (405)
Q Consensus        88 v~~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~r  167 (405)
                                                |.                         ....++.+             .....+
T Consensus       441 --------------------------g~-------------------------~r~glG~~-------------kst~tt  456 (975)
T KOG0112|consen  441 --------------------------GT-------------------------HRIGLGQP-------------KSTPTT  456 (975)
T ss_pred             --------------------------Cc-------------------------cccccccc-------------ccccce
Confidence                                      00                         00011100             011156


Q ss_pred             EEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCC--eeEEEeeccCC
Q psy14559        168 TLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKG--KTLQMFHSTQS  243 (405)
Q Consensus       168 tvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g--~~i~V~~a~~~  243 (405)
                      .+|+++|+..+....|...|..||.|..|.+    .+..-||||.|++...++.|+. |-|..|+|  ++|.|.++...
T Consensus       457 r~~sgglg~w~p~~~l~r~fd~fGpir~Idy----~hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~~  531 (975)
T KOG0112|consen  457 RLQSGGLGPWSPVSRLNREFDRFGPIRIIDY----RHGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASPP  531 (975)
T ss_pred             eeccCCCCCCChHHHHHHHhhccCcceeeec----ccCCcceeeecccCccchhhHHHHhcCcCCCCCcccccccccCC
Confidence            7999999999999999999999999999877    3345699999999999999998 99999986  57888888644

>KOG1365|consensus

Probab=98.70  E-value=1.1e-07  Score=92.93  Aligned_cols=189  Identities=12%  Similarity=0.163  Sum_probs=114.9

Q ss_pred             cEEEEcCCCCCCCHHHHHHHhccC----CceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559         12 KVVQVANIAPQATRDQMQTLFGYL----GKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus        12 ~tLfVgNLp~~vTeedLr~lFs~~----G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      -.|-.++||+++|+.|+.+||..-    |..+.|-+...    ..++..|-|||.|..+++|+.||..+...+..+-+-+
T Consensus       162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r----pdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIEl  237 (508)
T KOG1365|consen  162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR----PDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIEL  237 (508)
T ss_pred             eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC----CCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHH
Confidence            456779999999999999999731    34455555332    2477899999999999999999965543322221111


Q ss_pred             eecCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccCc
Q psy14559         88 TPYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRR  167 (405)
Q Consensus        88 v~~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~r  167 (405)
                      .....   ..-++.+...... ++.++.                              +.+..+..|..  .-+....+.
T Consensus       238 FRSTa---aEvqqvlnr~~s~-pLi~~~------------------------------~sp~~p~~p~~--~~p~~~~kd  281 (508)
T KOG1365|consen  238 FRSTA---AEVQQVLNREVSE-PLIPGL------------------------------TSPLLPGGPAR--LVPPTRSKD  281 (508)
T ss_pred             HHHhH---HHHHHHHHhhccc-cccCCC------------------------------CCCCCCCCccc--cCCCCCCCC
Confidence            00000   0001111111000 111100                              00000000000  000011156


Q ss_pred             EEEEeCCCCCCCHHHHHHHHhcCC-CeeE--EEEe-ccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q psy14559        168 TLVAINIEESVSPQELVDFFQKVG-TVNY--IRFC-TRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHS  240 (405)
Q Consensus       168 tvfV~NLp~~~tee~L~~~F~~~G-~I~~--i~i~-~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a  240 (405)
                      .|-..+||++.+.|+|.+||..|- .|..  +.++ +..|++.|-|||+|.+.+.|..|.. -+.+..++|-|.|-.+
T Consensus       282 cvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~  359 (508)
T KOG1365|consen  282 CVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPC  359 (508)
T ss_pred             eeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeec
Confidence            789999999999999999999986 3433  5553 4478899999999999999999987 5555556888888765

>KOG0132|consensus

Probab=98.67  E-value=4.6e-08  Score=102.75  Aligned_cols=74  Identities=22%  Similarity=0.337  Sum_probs=69.3

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQS  243 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~  243 (405)
                      .+|||||+|+..+++.+|..+|+.||+|.+|.+    ..++|+|||++....+|.+|+. |+...+.++.|+|.++...
T Consensus       421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~l----i~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~  495 (894)
T KOG0132|consen  421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIIL----IPPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGK  495 (894)
T ss_pred             eeeeeeccccchhhHHHHHHHHHhcccceeEee----ccCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccC
Confidence            579999999999999999999999999999988    4578999999999999999998 9999999999999998644

>KOG0130|consensus

Probab=98.67  E-value=3.7e-08  Score=83.43  Aligned_cols=76  Identities=14%  Similarity=0.235  Sum_probs=62.8

Q ss_pred             CcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCC-ccccceeEEee
Q psy14559         11 TKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNT-VFIDRALVVTP   89 (405)
Q Consensus        11 ~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~-~~~~~~~~vv~   89 (405)
                      --.|||+|+.+.+||++|.+.|..||+|+.+++- -  |..++..+|||.|+|++.++|+.|+..+|. .+++.. +.+.
T Consensus        72 GwIi~VtgvHeEatEedi~d~F~dyGeiKNihLN-L--DRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~-v~VD  147 (170)
T KOG0130|consen   72 GWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLN-L--DRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQN-VSVD  147 (170)
T ss_pred             eEEEEEeccCcchhHHHHHHHHhhcccccceeec-c--ccccccccceeeeehHhHHHHHHHHHhccchhhhCCc-eeEE
Confidence            3569999999999999999999999999999992 2  335899999999999999999999977664 455544 3444


Q ss_pred             c
Q psy14559         90 Y   90 (405)
Q Consensus        90 ~   90 (405)
                      |
T Consensus       148 w  148 (170)
T KOG0130|consen  148 W  148 (170)
T ss_pred             E
Confidence            4

>KOG0111|consensus

Probab=98.67  E-value=2.2e-08  Score=91.21  Aligned_cols=80  Identities=15%  Similarity=0.295  Sum_probs=67.1

Q ss_pred             cCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccC-Cccccce
Q psy14559          6 VAPVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTN-TVFIDRA   84 (405)
Q Consensus         6 ~~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n-~~~~~~~   84 (405)
                      ......+|||||+|...+||.-|..-|-+||.|.+|++ |-+.  .+++++|||||+|...+||..|+..+| ..++++.
T Consensus         5 ~~a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqi-PlDy--esqkHRgFgFVefe~aEDAaaAiDNMnesEL~Grt   81 (298)
T KOG0111|consen    5 QMANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQI-PLDY--ESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRT   81 (298)
T ss_pred             cccccceeEEeccchHHHHHHHHHhccccccchhhccc-ccch--hcccccceeEEEeeccchhHHHhhcCchhhhccee
Confidence            33557799999999999999999999999999999999 6543  568999999999999999999996555 4566665


Q ss_pred             eEEe
Q psy14559         85 LVVT   88 (405)
Q Consensus        85 ~~vv   88 (405)
                      +.|-
T Consensus        82 irVN   85 (298)
T KOG0111|consen   82 IRVN   85 (298)
T ss_pred             EEEe
Confidence            5543

>KOG4211|consensus

Probab=98.65  E-value=3.3e-07  Score=92.33  Aligned_cols=217  Identities=16%  Similarity=0.148  Sum_probs=124.6

Q ss_pred             CCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEe
Q psy14559          9 VKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVT   88 (405)
Q Consensus         9 ~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv   88 (405)
                      ....+|-.++||+.||++||.+||+..-.+....+++.+.   .+++.|-|||+|++.+.|+.||..++...-.+-+-+-
T Consensus       101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~---rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF  177 (510)
T KOG4211|consen  101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ---RGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVF  177 (510)
T ss_pred             CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC---CCCcccceEEEecCHHHHHHHHHHHHHhhccceEEee
Confidence            4678999999999999999999999876666633334433   3668999999999999999999776655555544443


Q ss_pred             ecCCCCCchHHHHHHHHhccC-CCC--CCCCCCC--Cccccc-----------------ccC---CCCCccccc-----C
Q psy14559         89 PYNSGEIPDEQRALEIAAQQQ-GPN--SGEPKLP--AHVTNQ-----------------IEG---VPPNQVIST-----H  138 (405)
Q Consensus        89 ~~~~~~~~~e~ka~~l~~~~~-g~~--~~~~~~~--~~~~~~-----------------~~~---~~~~~~~~~-----~  138 (405)
                      .....    +.   +...... +..  |+....+  ....+.                 ..+   .........     .
T Consensus       178 ~Ss~~----e~---~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs  250 (510)
T KOG4211|consen  178 RSSRA----EV---KRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGS  250 (510)
T ss_pred             hhHHH----HH---HhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccccccccccc
Confidence            32211    00   0000000 000  1111111  000000                 000   000000000     0


Q ss_pred             CcccccCCCCCCCCCCCC----CCCccccccCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEE-eccCCCCCcEEEEEE
Q psy14559        139 DPVLVQHGLPQYPPLPIT----YDTKKIEEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRF-CTRENDTNKYALVEF  213 (405)
Q Consensus       139 dp~~~~~~~~~~p~~~~~----~~~~~~~~~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i-~~~~~~~rg~afV~F  213 (405)
                      ....+..+.+... -+..    -+..........++..+||+..++.++..+|+..-.+ .+.| +..+++..|-|+|+|
T Consensus       251 ~~~~~~~~~~~~~-g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig~dGr~TGEAdveF  328 (510)
T KOG4211|consen  251 YGGGRDPNYPVSS-GPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIGPDGRATGEADVEF  328 (510)
T ss_pred             cccccccccCCCC-CcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeCCCCccCCcceeec
Confidence            0000001111100 0000    0011111112568888999999999999999976444 5555 455788899999999


Q ss_pred             CCHHHHHHHHHhCCceeCCeeEEE
Q psy14559        214 SDQACVIPALKLNGTNLKGKTLQM  237 (405)
Q Consensus       214 ~~~e~A~~Al~lng~~l~g~~i~V  237 (405)
                      .+.++|..|+..++..+..+-|..
T Consensus       329 ~t~edav~Amskd~anm~hrYVEl  352 (510)
T KOG4211|consen  329 ATGEDAVGAMGKDGANMGHRYVEL  352 (510)
T ss_pred             ccchhhHhhhccCCcccCcceeee
Confidence            999999999988888888776544

>KOG4210|consensus

Probab=98.65  E-value=1.4e-08  Score=98.75  Aligned_cols=174  Identities=14%  Similarity=0.162  Sum_probs=126.5

Q ss_pred             CCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEe
Q psy14559          9 VKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVT   88 (405)
Q Consensus         9 ~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv   88 (405)
                      +..++.|++++..++.+.+...+|..+|..........   .....++|++++.|+..+.+..|+.+......+.+..-.
T Consensus        86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~---~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~  162 (285)
T KOG4210|consen   86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSL---EDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEK  162 (285)
T ss_pred             cccccccccccccchhhccccccchhhcCcccchhhhh---ccccccccceeeccccHHHHHHHHHhhhccccccccccC
Confidence            35789999999999999999999999998777666221   124567999999999999999998776654443322111


Q ss_pred             ecCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccCcE
Q psy14559         89 PYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRT  168 (405)
Q Consensus        89 ~~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~rt  168 (405)
                      +....                                 .+      .....+..                 ........+
T Consensus       163 dl~~~---------------------------------~~------~~~~n~~~-----------------~~~~~~s~~  186 (285)
T KOG4210|consen  163 DLNTR---------------------------------RG------LRPKNKLS-----------------RLSSGPSDT  186 (285)
T ss_pred             ccccc---------------------------------cc------ccccchhc-----------------ccccCcccc
Confidence            11000                                 00      00000000                 001111345


Q ss_pred             EE-EeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeecc
Q psy14559        169 LV-AINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHST  241 (405)
Q Consensus       169 vf-V~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~  241 (405)
                      +| |+|+++.+++++|+.+|..||.|..++++.+  ++..+||||+.|........++..+...+.++++.+....
T Consensus       187 ~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (285)
T KOG4210|consen  187 IFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLEEDE  262 (285)
T ss_pred             ceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCcccccccCC
Confidence            66 9999999999999999999999999999755  6779999999999999988887766788999999988765

>KOG0108|consensus

Probab=98.61  E-value=8.8e-08  Score=97.60  Aligned_cols=78  Identities=22%  Similarity=0.261  Sum_probs=65.9

Q ss_pred             cEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEeecC
Q psy14559         12 KVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTPYN   91 (405)
Q Consensus        12 ~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~~~   91 (405)
                      ++|||||||+.+|+++|.++|+..|.|.++++ ..  |..+|+.+||||++|.+.+++..|+..+|...+.++.+-+.+.
T Consensus        19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~-v~--D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~   95 (435)
T KOG0108|consen   19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRL-VY--DRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYA   95 (435)
T ss_pred             cceEecCCCCcccHHHHHHHHhccCccceeee-cc--cccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecc
Confidence            89999999999999999999999999999999 43  4468999999999999999999999877765554444444444


Q ss_pred             C
Q psy14559         92 S   92 (405)
Q Consensus        92 ~   92 (405)
                      .
T Consensus        96 ~   96 (435)
T KOG0108|consen   96 S   96 (435)
T ss_pred             c
Confidence            3

>KOG4661|consensus

Probab=98.59  E-value=1.1e-07  Score=96.83  Aligned_cols=81  Identities=20%  Similarity=0.336  Sum_probs=72.9

Q ss_pred             cccCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEee
Q psy14559        163 EEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFH  239 (405)
Q Consensus       163 ~~~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~  239 (405)
                      ....++|||.+|+..+...+|+.+|++||+|.-.+++..  +...++|+||++.+.++|.+||. |+.+.|.|+.|.|..
T Consensus       402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk  481 (940)
T KOG4661|consen  402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK  481 (940)
T ss_pred             cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence            334689999999999999999999999999999998754  33468999999999999999999 999999999999999


Q ss_pred             ccCC
Q psy14559        240 STQS  243 (405)
Q Consensus       240 a~~~  243 (405)
                      +++.
T Consensus       482 aKNE  485 (940)
T KOG4661|consen  482 AKNE  485 (940)
T ss_pred             cccC
Confidence            9765

>KOG1456|consensus

Probab=98.59  E-value=4.9e-06  Score=81.34  Aligned_cols=196  Identities=18%  Similarity=0.235  Sum_probs=126.5

Q ss_pred             cCCCCCcEEEEcCCCC-CCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHH-hccCCccccc
Q psy14559          6 VAPVKTKVVQVANIAP-QATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQ-HLTNTVFIDR   83 (405)
Q Consensus         6 ~~~~~~~tLfVgNLp~-~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al-~~~n~~~~~~   83 (405)
                      .+....+++.|-+|.- .+.-+.|.++|-.||.|+.|++..+        ..|.|.|++.+..+++.|+ +++|..+++.
T Consensus       282 ~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkT--------k~gtamVemgd~~aver~v~hLnn~~lfG~  353 (494)
T KOG1456|consen  282 GGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKT--------KPGTAMVEMGDAYAVERAVTHLNNIPLFGG  353 (494)
T ss_pred             CCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeec--------ccceeEEEcCcHHHHHHHHHHhccCccccc
Confidence            3456779999999997 4678889999999999999999432        2578999999999999998 6777777777


Q ss_pred             eeEEeecCCCCCchHHHHHHHHhccCCCCCCCC-CCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccc
Q psy14559         84 ALVVTPYNSGEIPDEQRALEIAAQQQGPNSGEP-KLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKI  162 (405)
Q Consensus        84 ~~~vv~~~~~~~~~e~ka~~l~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~  162 (405)
                      .+.+.......+                .+... .+| +..-+....+.+.-..++.|..+..+.              .
T Consensus       354 kl~v~~SkQ~~v----------------~~~~pflLp-DgSpSfKdys~SkNnRFssp~qAsKNr--------------I  402 (494)
T KOG1456|consen  354 KLNVCVSKQNFV----------------SPVQPFLLP-DGSPSFKDYSGSKNNRFSSPEQASKNR--------------I  402 (494)
T ss_pred             eEEEeecccccc----------------ccCCceecC-CCCcchhhcccccccccCChhHhhccc--------------c
Confidence            775544322111                01100 111 000000000111111223333322221              1


Q ss_pred             cccCcEEEEeCCCCCCCHHHHHHHHhcCC-CeeEEEE-eccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCe------
Q psy14559        163 EEIRRTLVAINIEESVSPQELVDFFQKVG-TVNYIRF-CTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGK------  233 (405)
Q Consensus       163 ~~~~rtvfV~NLp~~~tee~L~~~F~~~G-~I~~i~i-~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~------  233 (405)
                      .-..++|..-|.|..+||+.|.++|..-+ .-.++++ ..++. ....+.++|++.++|..||. +|...+.+.      
T Consensus       403 q~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svkvFp~kse-rSssGllEfe~~s~Aveal~~~NH~pi~~p~gs~Pf  481 (494)
T KOG1456|consen  403 QPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVKVFPLKSE-RSSSGLLEFENKSDAVEALMKLNHYPIEGPNGSFPF  481 (494)
T ss_pred             cCCcceeEEecCCCccCHHHHHHHhhhcCCCcceEEeeccccc-ccccceeeeehHHHHHHHHHHhccccccCCCCCCCe
Confidence            12267899999999999999999998665 3455555 33322 23468999999999999998 998888764      


Q ss_pred             eEEEeecc
Q psy14559        234 TLQMFHST  241 (405)
Q Consensus       234 ~i~V~~a~  241 (405)
                      .++..++.
T Consensus       482 ilKlcfst  489 (494)
T KOG1456|consen  482 ILKLCFST  489 (494)
T ss_pred             eeeeeecc
Confidence            35555554

>KOG4208|consensus

Probab=98.57  E-value=1.8e-07  Score=84.78  Aligned_cols=75  Identities=21%  Similarity=0.348  Sum_probs=67.3

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcC-CCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKV-GTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHS  240 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~-G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a  240 (405)
                      ..-+||..+|..+.+.++..+|.++ |.+..+++.+.  +|.++|||||+|++.+-|.-|-+ ||++-|.|+.|.+..-
T Consensus        49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm  127 (214)
T KOG4208|consen   49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM  127 (214)
T ss_pred             ccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence            5569999999999999999999988 78888888443  99999999999999999999998 9999999999887654

>smart00361 RRM_1 RNA recognition motif

Probab=98.55  E-value=2.6e-07  Score=70.78  Aligned_cols=60  Identities=15%  Similarity=0.209  Sum_probs=45.5

Q ss_pred             HHHHHHHhc----cCCceEEEE-EeeccCCCCCCccccEEEEEecchhhHHHHHhccCCcccccee
Q psy14559         25 RDQMQTLFG----YLGKVEDLR-LYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRAL   85 (405)
Q Consensus        25 eedLr~lFs----~~G~I~~v~-i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~   85 (405)
                      +++|+++|+    .||.|.++. ++. ++....+.++|+|||+|.+.++|..|++.+|+..++++.
T Consensus         2 ~~~l~~~~~~~~~~fG~v~~v~~v~~-~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~   66 (70)
T smart00361        2 DEDFEREFSEEEEYFGEVGKINKIYI-DNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRT   66 (70)
T ss_pred             chhHHHHHHHHHHhcCCeeEEEEEEe-CCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence            678999999    999999995 422 222222778999999999999999999766655554443

>KOG4209|consensus

Probab=98.53  E-value=1.1e-07  Score=89.64  Aligned_cols=81  Identities=21%  Similarity=0.292  Sum_probs=73.1

Q ss_pred             cccCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeec
Q psy14559        163 EEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHS  240 (405)
Q Consensus       163 ~~~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a  240 (405)
                      +...+.+||+|+++.+|.++++..|+.||.|..+.+..+  .+.++|||||+|.+.+.++.|+.|||..|.|+.|.|.+.
T Consensus        98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~~  177 (231)
T KOG4209|consen   98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTLK  177 (231)
T ss_pred             ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeeee
Confidence            334678999999999999999999999999998888655  567999999999999999999999999999999999988


Q ss_pred             cCC
Q psy14559        241 TQS  243 (405)
Q Consensus       241 ~~~  243 (405)
                      +..
T Consensus       178 r~~  180 (231)
T KOG4209|consen  178 RTN  180 (231)
T ss_pred             eee
Confidence            654

>KOG4454|consensus

Probab=98.52  E-value=5.1e-08  Score=88.91  Aligned_cols=141  Identities=23%  Similarity=0.283  Sum_probs=95.4

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQS  243 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~  243 (405)
                      .+||||+|+...++++-|.++|-+.|+|..+.|+.+ .+..+ ||||.|.++-++..|++ +||..+.++.|.|++-...
T Consensus         9 drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G~   87 (267)
T KOG4454|consen    9 DRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCGN   87 (267)
T ss_pred             hhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhcccccCC
Confidence            789999999999999999999999999999999766 44455 99999999999999999 9999999999999876532


Q ss_pred             CCCCCCCChHHHHHHHHHHHHHHHHhhhhhh--hccCcccCcccccccCCCCCceEEEEEEEeeehhhHHHhhhCCCcce
Q psy14559        244 IQKPEAKSNEAAQREIEEAMSRVKEAQNMIS--AAIDPVIGILSKDKKKSHSPVRHLVIVLIVVDVALDLALEIGDDLEV  321 (405)
Q Consensus       244 ~~~p~~~~~~~~~~e~~~~~k~~~~~~~~~s--~~~ep~~~~~~~dk~~~~s~~~~~~~~~~~~d~~~~~al~~~~~~~~  321 (405)
                      .-.|..+.   ...++         .....+  +.+++..  ..++.. +|.++.++.+.-  --++.=.++++...++.
T Consensus        88 shapld~r---~~~ei---------~~~v~s~a~p~~~~R--~~~~~d-~rnrn~~~~~~q--r~~~~P~~~~~y~~l~~  150 (267)
T KOG4454|consen   88 SHAPLDER---VTEEI---------LYEVFSQAGPIEGVR--IPTDND-GRNRNFGFVTYQ--RLCAVPFALDLYQGLEL  150 (267)
T ss_pred             Ccchhhhh---cchhh---------heeeecccCCCCCcc--cccccc-CCccCccchhhh--hhhcCcHHhhhhcccCc
Confidence            11111110   01111         111111  2233332  223322 677777777642  12223456777777776


Q ss_pred             eee
Q psy14559        322 VVR  324 (405)
Q Consensus       322 ~~~  324 (405)
                      ..+
T Consensus       151 ~~~  153 (267)
T KOG4454|consen  151 FQK  153 (267)
T ss_pred             CCC
Confidence            655

>KOG0132|consensus

Probab=98.46  E-value=2.7e-07  Score=97.17  Aligned_cols=74  Identities=15%  Similarity=0.319  Sum_probs=62.4

Q ss_pred             CcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEeec
Q psy14559         11 TKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTPY   90 (405)
Q Consensus        11 ~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~~   90 (405)
                      ++|||||.|+.+++|.||.++|+.||+|++|.+++         ++++|||.+...++|.+|+..++.+-+....+.+.|
T Consensus       421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~---------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~W  491 (894)
T KOG0132|consen  421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP---------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAW  491 (894)
T ss_pred             eeeeeeccccchhhHHHHHHHHHhcccceeEeecc---------CCceeEEEEeehhHHHHHHHHHhcccccceeeEEee
Confidence            58999999999999999999999999999999933         489999999999999999965555555555555666


Q ss_pred             CCC
Q psy14559         91 NSG   93 (405)
Q Consensus        91 ~~~   93 (405)
                      +.+
T Consensus       492 a~g  494 (894)
T KOG0132|consen  492 AVG  494 (894)
T ss_pred             ecc
Confidence            654

>PF13893 RRM_5: RNA recognition motif

Probab=98.46  E-value=3.7e-07  Score=66.50  Aligned_cols=51  Identities=20%  Similarity=0.395  Sum_probs=39.0

Q ss_pred             HHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHh-ccCCccccceeE
Q psy14559         28 MQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQH-LTNTVFIDRALV   86 (405)
Q Consensus        28 Lr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~-~~n~~~~~~~~~   86 (405)
                      |+++|++||+|.++.+.+.        .+++|||+|.+.++|..|++ +++..+.++.+.
T Consensus         1 L~~~f~~fG~V~~i~~~~~--------~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~   52 (56)
T PF13893_consen    1 LYKLFSKFGEVKKIKIFKK--------KRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLK   52 (56)
T ss_dssp             HHHHHTTTS-EEEEEEETT--------STTEEEEEESSHHHHHHHHHHHTTSEETTEEEE
T ss_pred             ChHHhCCcccEEEEEEEeC--------CCCEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence            6899999999999999321        16999999999999999996 455555555443

(a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....

>KOG0153|consensus

Probab=98.43  E-value=4.2e-07  Score=88.05  Aligned_cols=74  Identities=12%  Similarity=0.282  Sum_probs=64.0

Q ss_pred             CcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHH-hccCCccccceeEEee
Q psy14559         11 TKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQ-HLTNTVFIDRALVVTP   89 (405)
Q Consensus        11 ~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al-~~~n~~~~~~~~~vv~   89 (405)
                      -.||||+||-..++|.+|++.|.+||+|+++.+.+         .+++|||+|.+.++|+.|. +..|..++++..+-+.
T Consensus       228 I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~---------~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~  298 (377)
T KOG0153|consen  228 IKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILP---------RKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIK  298 (377)
T ss_pred             eeEEEecccccchhHHHHHHHHhhcCCeeeEEeec---------ccccceeeehhhHHHHHHHHhhcceeeecceEEEEE
Confidence            47899999999999999999999999999999943         2679999999999999986 5677888887777776


Q ss_pred             cCCC
Q psy14559         90 YNSG   93 (405)
Q Consensus        90 ~~~~   93 (405)
                      |..+
T Consensus       299 Wg~~  302 (377)
T KOG0153|consen  299 WGRP  302 (377)
T ss_pred             eCCC
Confidence            7664

>KOG0146|consensus

Probab=98.42  E-value=2.7e-07  Score=86.37  Aligned_cols=76  Identities=21%  Similarity=0.361  Sum_probs=66.5

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHH-hCCc-eeCC--eeEEEeec
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALK-LNGT-NLKG--KTLQMFHS  240 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~-lng~-~l~g--~~i~V~~a  240 (405)
                      .|+||||-|...-+|||++.+|..||.|.+|.+.+. +|.+||+|||.|.+..+|+.||. |+|. .+-|  ..|-|+++
T Consensus        19 drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~A   98 (371)
T KOG0146|consen   19 DRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKFA   98 (371)
T ss_pred             chhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEec
Confidence            689999999999999999999999999999988654 78899999999999999999999 9984 3434  35777776


Q ss_pred             c
Q psy14559        241 T  241 (405)
Q Consensus       241 ~  241 (405)
                      .
T Consensus        99 D   99 (371)
T KOG0146|consen   99 D   99 (371)
T ss_pred             c
Confidence            4

>KOG0116|consensus

Probab=98.42  E-value=5.4e-07  Score=91.38  Aligned_cols=77  Identities=19%  Similarity=0.339  Sum_probs=67.7

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeeccC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~~  242 (405)
                      ..+|||+|||++++..+|+++|.+||.|+...|...  .++..+||||+|.+.++++.|+.-+-..++|+++.|+-.+.
T Consensus       288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~  366 (419)
T KOG0116|consen  288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRP  366 (419)
T ss_pred             ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEeccc
Confidence            457999999999999999999999999999988543  24444999999999999999999888899999999987653

>KOG0415|consensus

Probab=98.41  E-value=3.7e-07  Score=88.48  Aligned_cols=81  Identities=15%  Similarity=0.303  Sum_probs=67.9

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      .++..+|||.-|.|-+|.++|.-+||.||+|.+|.++.   |..++.+-.||||+|.+.++.+.|.=.+..++++...+-
T Consensus       236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIR---D~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIH  312 (479)
T KOG0415|consen  236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIR---DRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIH  312 (479)
T ss_pred             CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEe---cccccchhheeeeeecchhhHHHHHhhhcceeeccceEE
Confidence            56789999999999999999999999999999999954   556899999999999999999999744445566555555


Q ss_pred             eecC
Q psy14559         88 TPYN   91 (405)
Q Consensus        88 v~~~   91 (405)
                      |.+.
T Consensus       313 VDFS  316 (479)
T KOG0415|consen  313 VDFS  316 (479)
T ss_pred             eehh
Confidence            5543

>KOG0106|consensus

Probab=98.38  E-value=5.1e-07  Score=83.54  Aligned_cols=69  Identities=22%  Similarity=0.351  Sum_probs=63.8

Q ss_pred             EEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559        168 TLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       168 tvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~  242 (405)
                      .+|||+||+.+.+.+|..||..||.|.++.+      ..||+||+|.+.-+|.-|+. +||..|.|-.+.|+++..
T Consensus         3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~m------k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~   72 (216)
T KOG0106|consen    3 RVYIGRLPYRARERDVERFFKGYGKIPDADM------KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG   72 (216)
T ss_pred             ceeecccCCccchhHHHHHHhhcccccccee------ecccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence            5899999999999999999999999999987      35799999999999999998 999999999988888864

>KOG4307|consensus

Probab=98.37  E-value=2e-06  Score=89.61  Aligned_cols=200  Identities=13%  Similarity=0.071  Sum_probs=130.3

Q ss_pred             CCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEe
Q psy14559          9 VKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVT   88 (405)
Q Consensus         9 ~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv   88 (405)
                      ..++.+-+++.+.+..+.|++++|... .|..+.|. .  +...+-..|.++|+|....++++|++.+++.++++...+.
T Consensus       309 ~d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~-~--~~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R~~q~~  384 (944)
T KOG4307|consen  309 SDKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLS-E--NRVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNRPFQTG  384 (944)
T ss_pred             chhheeeecccccccccchhhhhcCcc-cccccchh-h--hhcCCCcCCceEEEecCcchHHHHHhcCchhhhhcceeec
Confidence            346778889999999999999999752 24444441 1  1122334789999999999999999999999999999888


Q ss_pred             ecCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCC-CCCCCCCCccccccCc
Q psy14559         89 PYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYP-PLPITYDTKKIEEIRR  167 (405)
Q Consensus        89 ~~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p-~~~~~~~~~~~~~~~r  167 (405)
                      +..+.....          +.+...+.+. +  ...+--+.      ...-| ....+ ++.+ +.|        .....
T Consensus       385 P~g~~~~~~----------a~~~~~~~~~-~--~~~~~hg~------p~~~p-r~~~~-~gq~vp~P--------~~ag~  435 (944)
T KOG4307|consen  385 PPGNLGRNG----------APPFQAGVPP-P--VIQNNHGR------PIAPP-RAMVR-PGQNVPFP--------GGAGG  435 (944)
T ss_pred             CCCcccccc----------CccccccCCC-C--cccccCCC------CCCCc-ccccC-CCCCCCCC--------CCccc
Confidence            865532110          0000000000 0  00000000      00000 00111 1111 111        12267


Q ss_pred             EEEEeCCCCCCCHHHHHHHHhcCCCeeE-EEEecc-CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559        168 TLVAINIEESVSPQELVDFFQKVGTVNY-IRFCTR-ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST  241 (405)
Q Consensus       168 tvfV~NLp~~~tee~L~~~F~~~G~I~~-i~i~~~-~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~  241 (405)
                      .|||..||..+++.++.++|+..-.|++ |.|..- ++.-++-|||.|..++++.+|.. -.-+.++-+.|+|....
T Consensus       436 ~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~  512 (944)
T KOG4307|consen  436 ALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIA  512 (944)
T ss_pred             eEEeccCCccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeechh
Confidence            8999999999999999999998877777 766443 66788999999999999999987 55566777788887654

>KOG0533|consensus

Probab=98.36  E-value=1.5e-06  Score=82.06  Aligned_cols=78  Identities=18%  Similarity=0.251  Sum_probs=70.7

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQS  243 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~  243 (405)
                      ..+|+|.|||+.+++++|+++|..||.+..+.+-.+ .|.+.|.|-|.|...++|..|++ +||..+.|++|++......
T Consensus        83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~  162 (243)
T KOG0533|consen   83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSP  162 (243)
T ss_pred             cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCc
Confidence            468999999999999999999999999888888544 78899999999999999999999 9999999999998877533

>KOG4660|consensus

Probab=98.35  E-value=5.8e-07  Score=91.85  Aligned_cols=71  Identities=18%  Similarity=0.390  Sum_probs=59.4

Q ss_pred             CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCc-ccccee
Q psy14559          7 APVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTV-FIDRAL   85 (405)
Q Consensus         7 ~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~-~~~~~~   85 (405)
                      ..-..++|+|-|||.++|+++|+.+|+.||+|.+|+.        +.-.++++||+|-|..+|+.|++..|.. +.++++
T Consensus        71 ~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~--------t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~  142 (549)
T KOG4660|consen   71 KDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE--------TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRI  142 (549)
T ss_pred             ccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc--------ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhh
Confidence            3556799999999999999999999999999999776        3446899999999999999999766643 444443

>KOG4660|consensus

Probab=98.34  E-value=4.7e-07  Score=92.50  Aligned_cols=71  Identities=32%  Similarity=0.423  Sum_probs=64.9

Q ss_pred             cccCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEE
Q psy14559        163 EEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQ  236 (405)
Q Consensus       163 ~~~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~  236 (405)
                      +-..++|+|-|||.++++++|..+|+.||+|..|+.   +-..+|.+||+|-+.-+|++|++ ||+..+.|+.|+
T Consensus        72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~---t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k  143 (549)
T KOG4660|consen   72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE---TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK  143 (549)
T ss_pred             cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc---ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence            334789999999999999999999999999999766   45568999999999999999999 999999999888

>KOG0226|consensus

Probab=98.33  E-value=6.5e-07  Score=83.44  Aligned_cols=168  Identities=14%  Similarity=0.171  Sum_probs=118.0

Q ss_pred             CCCcEEEEcCCCCCCCHHH-H--HHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCcccccee
Q psy14559          9 VKTKVVQVANIAPQATRDQ-M--QTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRAL   85 (405)
Q Consensus         9 ~~~~tLfVgNLp~~vTeed-L--r~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~   85 (405)
                      +..-..+++|+-..+-.+- |  ...|+.+-....-++....    -+.-++++|+.|.....-..+...-++..++...
T Consensus        94 P~vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~----p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~  169 (290)
T KOG0226|consen   94 PAVFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR----PQPIRPEAFESFKASDALLKAETEKEKKKIGKPP  169 (290)
T ss_pred             cccccccccccccccCCCCCCcchhhhccchhhhhhhhhhcC----CCccCcccccCcchhhhhhhhccccccccccCcc
Confidence            3445677888887776665 4  6778777666665552221    2456889999999888666666554444443322


Q ss_pred             EEeecCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCcccccc
Q psy14559         86 VVTPYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEI  165 (405)
Q Consensus        86 ~vv~~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~  165 (405)
                      +-.  ..               +                          ..-.||++..  |               .+.
T Consensus       170 VR~--a~---------------g--------------------------tswedPsl~e--w---------------~~~  189 (290)
T KOG0226|consen  170 VRL--AA---------------G--------------------------TSWEDPSLAE--W---------------DED  189 (290)
T ss_pred             eee--cc---------------c--------------------------cccCCccccc--C---------------ccc
Confidence            100  00               0                          0112232211  1               122


Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHS  240 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a  240 (405)
                      ..+||+|.|.-+++++-|-..|.+|-.-...+++++  +|+++||+||.|.+.+++..|+. |||..++.++|+...+
T Consensus       190 DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS  267 (290)
T KOG0226|consen  190 DFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS  267 (290)
T ss_pred             cceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence            568999999999999999999999987777777665  89999999999999999999998 9999999999987655

>KOG4208|consensus

Probab=98.29  E-value=1.6e-06  Score=78.77  Aligned_cols=77  Identities=21%  Similarity=0.307  Sum_probs=63.3

Q ss_pred             CCCcEEEEcCCCCCCCHHHHHHHhccC-CceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHh-ccCCccccceeE
Q psy14559          9 VKTKVVQVANIAPQATRDQMQTLFGYL-GKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQH-LTNTVFIDRALV   86 (405)
Q Consensus         9 ~~~~tLfVgNLp~~vTeedLr~lFs~~-G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~-~~n~~~~~~~~~   86 (405)
                      .....+||..+|..+-+.++..+|.+| |.+..+++   .++..||.++|||||+|.+++.|+.|.. |+|..+.+..+.
T Consensus        47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rl---sRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~  123 (214)
T KOG4208|consen   47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRL---SRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLE  123 (214)
T ss_pred             CCccceeecccccchhHHHHhhhhhhcCCeeEEEEe---ecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheee
Confidence            345679999999999999999999998 77888888   2455799999999999999999999875 566666666555


Q ss_pred             Ee
Q psy14559         87 VT   88 (405)
Q Consensus        87 vv   88 (405)
                      |.
T Consensus       124 c~  125 (214)
T KOG4208|consen  124 CH  125 (214)
T ss_pred             eE
Confidence            43

>KOG0116|consensus

Probab=98.24  E-value=1.7e-06  Score=87.90  Aligned_cols=76  Identities=14%  Similarity=0.167  Sum_probs=60.9

Q ss_pred             CCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEee
Q psy14559         10 KTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTP   89 (405)
Q Consensus        10 ~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~   89 (405)
                      ...+|||+|||+++|+++|+++|..||.|+...|-.+..   -++..+||||+|.+.++++.|++.. ..++++....+.
T Consensus       287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~---~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~~kl~Ve  362 (419)
T KOG0116|consen  287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSP---GGKNPCFGFVEFENAAAVQNAIEAS-PLEIGGRKLNVE  362 (419)
T ss_pred             cccceEeecCCCCCCHHHHHHHHhhcccccccceEEecc---CCCcCceEEEEEeecchhhhhhhcC-ccccCCeeEEEE
Confidence            345699999999999999999999999999988833321   1334499999999999999999887 666666555554

>KOG0151|consensus

Probab=98.13  E-value=6.4e-06  Score=86.21  Aligned_cols=78  Identities=19%  Similarity=0.240  Sum_probs=70.0

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc-----CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEee
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR-----ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFH  239 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~-----~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~  239 (405)
                      ..++||+||++.++++.|...|+.||+|.+++++..     ....+.++||-|-+..+|++|+. |+|..+.+..+++.+
T Consensus       174 TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~gW  253 (877)
T KOG0151|consen  174 TTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLGW  253 (877)
T ss_pred             ccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeecc
Confidence            568999999999999999999999999999998632     23467899999999999999999 999999999999998


Q ss_pred             ccCC
Q psy14559        240 STQS  243 (405)
Q Consensus       240 a~~~  243 (405)
                      ++..
T Consensus       254 gk~V  257 (877)
T KOG0151|consen  254 GKAV  257 (877)
T ss_pred             cccc
Confidence            8655

>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes

Probab=98.13  E-value=1.3e-05  Score=62.82  Aligned_cols=67  Identities=21%  Similarity=0.323  Sum_probs=48.2

Q ss_pred             cEEEEeCCCCCCCHH----HHHHHHhcCC-CeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q psy14559        167 RTLVAINIEESVSPQ----ELVDFFQKVG-TVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHS  240 (405)
Q Consensus       167 rtvfV~NLp~~~tee----~L~~~F~~~G-~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a  240 (405)
                      ..|||.|||.+.+..    -|+.++.-|| +|.+|.        .+.|+|-|.+++.|.+|++ |+|..+.|++|.|++.
T Consensus         3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~--------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~   74 (90)
T PF11608_consen    3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS--------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFS   74 (90)
T ss_dssp             EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE----------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS
T ss_pred             cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe--------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEc
Confidence            469999999998875    4778888897 776662        4679999999999999998 9999999999999997


Q ss_pred             c
Q psy14559        241 T  241 (405)
Q Consensus       241 ~  241 (405)
                      .
T Consensus        75 ~   75 (90)
T PF11608_consen   75 P   75 (90)
T ss_dssp             -
T ss_pred             C
Confidence            4

Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.

>KOG1365|consensus

Probab=98.12  E-value=9e-06  Score=79.78  Aligned_cols=285  Identities=16%  Similarity=0.181  Sum_probs=169.8

Q ss_pred             CCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEee
Q psy14559         10 KTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTP   89 (405)
Q Consensus        10 ~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~   89 (405)
                      .+-.|-.++||+..++.+|-.+|.-.-...--+.+.   ....++.-|.|.|.|.+.+.-+.|++........+.+-+-.
T Consensus        59 ~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKO---G~~qgrRnge~lvrf~d~e~RdlalkRhkhh~g~ryievYk  135 (508)
T KOG1365|consen   59 DNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALC---LNAQGRRNGEALVRFVDPEGRDLALKRHKHHMGTRYIEVYK  135 (508)
T ss_pred             cceEEEecCCCCCcccCCHHHHHhhhhccccceeee---ehhhhccccceEEEecCchhhhhhhHhhhhhccCCceeeec
Confidence            445667799999999999999997532211111100   11235667899999999999999987765555444332221


Q ss_pred             cCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccCcEE
Q psy14559         90 YNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRTL  169 (405)
Q Consensus        90 ~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~rtv  169 (405)
                      . .+    ++ .+. +++      |.. .                              ..++.+     ++..  .-.|
T Consensus       136 a-~g----e~-f~~-iag------g~s-~------------------------------e~~~fl-----sk~~--qviv  164 (508)
T KOG1365|consen  136 A-TG----EE-FLK-IAG------GTS-N------------------------------EAAPFL-----SKEN--QVIV  164 (508)
T ss_pred             c-Cc----hh-heE-ecC------Ccc-c------------------------------cCCCCC-----Cccc--ceEE
Confidence            1 00    00 000 000      000 0                              000000     0001  2346


Q ss_pred             EEeCCCCCCCHHHHHHHHhc-C---CCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeeccCCC
Q psy14559        170 VAINIEESVSPQELVDFFQK-V---GTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQSI  244 (405)
Q Consensus       170 fV~NLp~~~tee~L~~~F~~-~---G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~~~~  244 (405)
                      -..+||+++++.++.+||.. |   |....|-++.. +|+..|-|||.|..++.|+.||..+...++-|-|.+-++.   
T Consensus       165 RmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElFRST---  241 (508)
T KOG1365|consen  165 RMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELFRST---  241 (508)
T ss_pred             EecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHHHHh---
Confidence            67799999999999999973 2   34456655544 7899999999999999999999988777777766654433   


Q ss_pred             CCCCCCChHHHHHHHHHHHHHHHHhhhhhhhccCcccCcc-cccccCCCCCceEEEEEEEeeehhhHHHhhhCCCcceee
Q psy14559        245 QKPEAKSNEAAQREIEEAMSRVKEAQNMISAAIDPVIGIL-SKDKKKSHSPVRHLVIVLIVVDVALDLALEIGDDLEVVV  323 (405)
Q Consensus       245 ~~p~~~~~~~~~~e~~~~~k~~~~~~~~~s~~~ep~~~~~-~~dk~~~~s~~~~~~~~~~~~d~~~~~al~~~~~~~~~~  323 (405)
                                 ..|....+++.... .++.+...|...-. ..--.+-++ +.-+-..-+.....++.+|.+..+++..-
T Consensus       242 -----------aaEvqqvlnr~~s~-pLi~~~~sp~~p~~p~~~~p~~~~-kdcvRLRGLPy~AtvEdIL~FlgdFa~~i  308 (508)
T KOG1365|consen  242 -----------AAEVQQVLNREVSE-PLIPGLTSPLLPGGPARLVPPTRS-KDCVRLRGLPYEATVEDILDFLGDFATDI  308 (508)
T ss_pred             -----------HHHHHHHHHhhccc-cccCCCCCCCCCCCccccCCCCCC-CCeeEecCCChhhhHHHHHHHHHHHhhhc
Confidence                       12333333332211 11111111111100 000111111 11111112357788899999999999988


Q ss_pred             eeeccccccccccccceEEEEEecCcccccccCCCCCccee
Q psy14559        324 RDVGHVREEDQDHVVDVLCLVIVRDPHVARDVHAPDHASVH  364 (405)
Q Consensus       324 ~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (405)
                      ++-|-=--++..-+|-|=|-|-|+.-+.||-.-.-+|-.++
T Consensus       309 ~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~m  349 (508)
T KOG1365|consen  309 RFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLM  349 (508)
T ss_pred             ccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhc
Confidence            87665555788889999999999999999987776666554

>KOG1457|consensus

Probab=98.08  E-value=3e-05  Score=71.25  Aligned_cols=78  Identities=21%  Similarity=0.388  Sum_probs=64.0

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEE--eccCC-CCCcEEEEEECCHHHHHHHHH-hCCceeC---CeeEEEe
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRF--CTREN-DTNKYALVEFSDQACVIPALK-LNGTNLK---GKTLQMF  238 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i--~~~~~-~~rg~afV~F~~~e~A~~Al~-lng~~l~---g~~i~V~  238 (405)
                      -|||||.+||.++...||..+|-.|---+.+.+  ..+.+ ..+-+||++|.+..+|..|+. |||..|+   +..|+|+
T Consensus        34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiE  113 (284)
T KOG1457|consen   34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIE  113 (284)
T ss_pred             cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEee
Confidence            589999999999999999999998854555544  22222 246899999999999999998 9999886   7789999


Q ss_pred             eccCC
Q psy14559        239 HSTQS  243 (405)
Q Consensus       239 ~a~~~  243 (405)
                      .+++.
T Consensus       114 lAKSN  118 (284)
T KOG1457|consen  114 LAKSN  118 (284)
T ss_pred             ehhcC
Confidence            88654

>KOG4209|consensus

Probab=97.95  E-value=1.1e-05  Score=76.03  Aligned_cols=82  Identities=20%  Similarity=0.198  Sum_probs=68.5

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      ......+||+|+.+.+|.+++...|+.||.|..+.+ +.++  .++.+++|+||+|.+.+.++.|+.++...+.+.++.+
T Consensus        98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti-~~d~--~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~v  174 (231)
T KOG4209|consen   98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTV-PKDK--FRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEV  174 (231)
T ss_pred             ccCCceEEEeccccccccchhhheeeccCCccceee-eccc--cCCCcceeEEEecccHhhhHHHhhcCCccccccccee
Confidence            456789999999999999999999999999998888 5544  3456899999999999999999997777777776666


Q ss_pred             eecCC
Q psy14559         88 TPYNS   92 (405)
Q Consensus        88 v~~~~   92 (405)
                      ..+..
T Consensus       175 t~~r~  179 (231)
T KOG4209|consen  175 TLKRT  179 (231)
T ss_pred             eeeee
Confidence            55433

>KOG4661|consensus

Probab=97.95  E-value=1.5e-05  Score=81.48  Aligned_cols=79  Identities=10%  Similarity=0.140  Sum_probs=65.0

Q ss_pred             CcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEeec
Q psy14559         11 TKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTPY   90 (405)
Q Consensus        11 ~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~~   90 (405)
                      .+.|||.+|+..+.-.+|++||++||+|.-.++..   +..++..++|+||.+.+.++|.+++..+....+.+.+|.|..
T Consensus       405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVT---NaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk  481 (940)
T KOG4661|consen  405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVT---NARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK  481 (940)
T ss_pred             ccceeeeccccchhhhHHHHHHHHhcceeceeeee---cCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence            47899999999999999999999999999999954   334677899999999999999999965555555556666654


Q ss_pred             CC
Q psy14559         91 NS   92 (405)
Q Consensus        91 ~~   92 (405)
                      +.
T Consensus       482 aK  483 (940)
T KOG4661|consen  482 AK  483 (940)
T ss_pred             cc
Confidence            43

>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2

Probab=97.87  E-value=9.4e-05  Score=60.32  Aligned_cols=75  Identities=19%  Similarity=0.309  Sum_probs=61.2

Q ss_pred             cEEEEeCCCCCCCHHHHHHHHhcC--CCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeC----CeeEEE
Q psy14559        167 RTLVAINIEESVSPQELVDFFQKV--GTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLK----GKTLQM  237 (405)
Q Consensus       167 rtvfV~NLp~~~tee~L~~~F~~~--G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~----g~~i~V  237 (405)
                      .||-+.|||...|.++|.+++...  |...-+.++.|  ++-+.|||||.|.+++.|..-.+ ++|..+.    .+...|
T Consensus         2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i   81 (97)
T PF04059_consen    2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI   81 (97)
T ss_pred             eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence            589999999999999999999743  67777777766  56689999999999999998887 9998775    334456


Q ss_pred             eecc
Q psy14559        238 FHST  241 (405)
Q Consensus       238 ~~a~  241 (405)
                      .+|+
T Consensus        82 ~yAr   85 (97)
T PF04059_consen   82 SYAR   85 (97)
T ss_pred             ehhH
Confidence            6654

It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).

>KOG0533|consensus

Probab=97.73  E-value=8.7e-05  Score=70.22  Aligned_cols=76  Identities=16%  Similarity=0.172  Sum_probs=63.1

Q ss_pred             CCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEee
Q psy14559         10 KTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTP   89 (405)
Q Consensus        10 ~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~   89 (405)
                      ...+|+|.|||..++++||++||..||.++.+-+ -.++   .+.+.|.|=|.|...+||..|++-.+.+.+++..+.+.
T Consensus        82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~v-hy~~---~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~  157 (243)
T KOG0533|consen   82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAV-HYDR---AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIE  157 (243)
T ss_pred             CcceeeeecCCcCcchHHHHHHHHHhccceEEee-ccCC---CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeE
Confidence            4468999999999999999999999999888888 3333   58889999999999999999997655577776654443

>KOG0151|consensus

Probab=97.54  E-value=0.00012  Score=76.84  Aligned_cols=74  Identities=14%  Similarity=0.248  Sum_probs=60.0

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccC-CCCCCccccEEEEEecchhhHHHHHhccCCcccc
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIAR-DVSIPVQSRICYVKFFDEKCVGISQHLTNTVFID   82 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~-d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~   82 (405)
                      .+.+..|||+||++.+++..|-..|+.||+|.+++| +-.+ +.-....+.+|||.|.+..||+.|++.+++..+-
T Consensus       171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKi-mwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~  245 (877)
T KOG0151|consen  171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKI-MWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVM  245 (877)
T ss_pred             CCcccceeeecCCccccHHHHHHHhcccCcccceee-ecccchhhhccccccceeeehhhhhHHHHHHHhcceeee
Confidence            456788999999999999999999999999999998 3322 1113456789999999999999999866654443

>KOG1995|consensus

Probab=97.49  E-value=9.2e-05  Score=72.49  Aligned_cols=76  Identities=21%  Similarity=0.387  Sum_probs=66.5

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeE--------EEEec--cCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCee
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNY--------IRFCT--RENDTNKYALVEFSDQACVIPALK-LNGTNLKGKT  234 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~--------i~i~~--~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~  234 (405)
                      ..||||-+||..+++..|.++|.+||.|..        |.+..  .++.+|+-|.|+|.+...|+.|+. +++..+.|..
T Consensus        66 ~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn~  145 (351)
T KOG1995|consen   66 NETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGNT  145 (351)
T ss_pred             cccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCCC
Confidence            568999999999999999999999998854        22322  277899999999999999999999 9999999999


Q ss_pred             EEEeecc
Q psy14559        235 LQMFHST  241 (405)
Q Consensus       235 i~V~~a~  241 (405)
                      |+|..+.
T Consensus       146 ikvs~a~  152 (351)
T KOG1995|consen  146 IKVSLAE  152 (351)
T ss_pred             chhhhhh
Confidence            9998775

>KOG4676|consensus

Probab=97.47  E-value=7e-05  Score=73.83  Aligned_cols=133  Identities=28%  Similarity=0.279  Sum_probs=102.1

Q ss_pred             CCCCCCCCCCCccccccCcEEEEeCCCCCCCH-HHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHHhCC
Q psy14559        149 QYPPLPITYDTKKIEEIRRTLVAINIEESVSP-QELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALKLNG  227 (405)
Q Consensus       149 ~~p~~~~~~~~~~~~~~~rtvfV~NLp~~~te-e~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~lng  227 (405)
                      +.+.+.++++..+.....+++||++++..+.. .++..+|-+.+...-|....+...+-.|||+.|.+..++..+|..+|
T Consensus        35 ~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~~~~~p~r~af~~l~~~navprll~pdg  114 (479)
T KOG4676|consen   35 PELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYGDEVIPDRFAFVELADQNAVPRLLPPDG  114 (479)
T ss_pred             ccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEecCCCCCccHHHHHhcCcccccccccCCCC
Confidence            33445555666677777999999999987654 66777777777666555445555666789999999999999988999


Q ss_pred             ceeCCeeE-EEeeccCCCCCCCCCChHHHHHHHHHHHHHHHHhhhhhhhccCcccC
Q psy14559        228 TNLKGKTL-QMFHSTQSIQKPEAKSNEAAQREIEEAMSRVKEAQNMISAAIDPVIG  282 (405)
Q Consensus       228 ~~l~g~~i-~V~~a~~~~~~p~~~~~~~~~~e~~~~~k~~~~~~~~~s~~~ep~~~  282 (405)
                      ..+..+++ .+.+..+...+++..++..+..++++.+ +..+.++++++.+.++..
T Consensus       115 ~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeir-Rt~~v~sl~~~~~l~e~~  169 (479)
T KOG4676|consen  115 VLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIR-RTREVQSLISAAILPESG  169 (479)
T ss_pred             ccCCCCccccccCCccceecCCCCChHhhhhhhHHHH-hhhhhhcchhhhcchhhh
Confidence            99999998 5666666677777777788888888887 777889999888877655

>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif

Probab=97.37  E-value=0.00056  Score=49.49  Aligned_cols=52  Identities=10%  Similarity=0.239  Sum_probs=43.0

Q ss_pred             cEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHH
Q psy14559        167 RTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPAL  223 (405)
Q Consensus       167 rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al  223 (405)
                      +.|-|.+.+.+..+. +..+|.+||+|..+.+.    ....+.||.|.+..+|++||
T Consensus         2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~----~~~~~~~l~y~~~~~ae~Al   53 (53)
T PF14605_consen    2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVP----ESTNWMYLKYKSRKDAEKAL   53 (53)
T ss_pred             cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcC----CCCcEEEEEECCHHHHHhhC
Confidence            467889999887755 55588999999999883    34568999999999999985

>KOG0128|consensus

Probab=97.34  E-value=1.4e-05  Score=85.30  Aligned_cols=164  Identities=13%  Similarity=0.136  Sum_probs=105.9

Q ss_pred             CCCcEEEEcCCCCCCCHH-HHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559          9 VKTKVVQVANIAPQATRD-QMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus         9 ~~~~tLfVgNLp~~vTee-dLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      ..-+...+.|+.+...+. ..+..|..+|.|+.|++ +..++...  ...++++.+....+++.|.....+-+-.+... 
T Consensus       569 ~~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~-p~~g~k~h--~q~~~~~~~s~~~~~esat~pa~~~~a~~~~a-  644 (881)
T KOG0128|consen  569 LERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNG-PKRGFKAH--EQPQQQKVQSKHGSAESATVPAGGALANRSAA-  644 (881)
T ss_pred             hhhhhhcccCCCcchhhHHhhHHHhhcccccccccC-cccccccc--ccchhhhhhccccchhhcccccccccCCcccc-
Confidence            344567788888877666 67789999999999999 55332221  12267777777777666653322211111100 


Q ss_pred             eecCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccCc
Q psy14559         88 TPYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRR  167 (405)
Q Consensus        88 v~~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~r  167 (405)
                                                                     ....++.......    .    + .........
T Consensus       645 -----------------------------------------------v~~ad~~~~~~~~----k----v-s~n~~R~~~  668 (881)
T KOG0128|consen  645 -----------------------------------------------VGLADAEEKEENF----K----V-SPNEIRDLI  668 (881)
T ss_pred             -----------------------------------------------CCCCCchhhhhcc----C----c-CchHHHHHH
Confidence                                                           0011111111110    0    0 001112245


Q ss_pred             EEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEe--ccCCCCCcEEEEEECCHHHHHHHHHhCCceeCC
Q psy14559        168 TLVAINIEESVSPQELVDFFQKVGTVNYIRFC--TRENDTNKYALVEFSDQACVIPALKLNGTNLKG  232 (405)
Q Consensus       168 tvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~--~~~~~~rg~afV~F~~~e~A~~Al~lng~~l~g  232 (405)
                      ++||+||+..+.+.+|...|+.+|.+..+++.  ...++.||+||++|.+++++.+|+.++...+.|
T Consensus       669 ~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g  735 (881)
T KOG0128|consen  669 KIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG  735 (881)
T ss_pred             HHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence            89999999999999999999999988887764  447789999999999999999999965555555

>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif

Probab=97.33  E-value=0.00045  Score=49.99  Aligned_cols=52  Identities=17%  Similarity=0.369  Sum_probs=42.8

Q ss_pred             cEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHH
Q psy14559         12 KVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQ   73 (405)
Q Consensus        12 ~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al   73 (405)
                      +.|-|.+.++...+. +...|+.||+|..+.+ +        ....+.||.|.+..+|+.||
T Consensus         2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~-~--------~~~~~~~l~y~~~~~ae~Al   53 (53)
T PF14605_consen    2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYV-P--------ESTNWMYLKYKSRKDAEKAL   53 (53)
T ss_pred             cEEEEEeECchHHHH-HHHHHHhcCCEEEEEc-C--------CCCcEEEEEECCHHHHHhhC
Confidence            578899999877754 5558999999999988 2        23678999999999999885

>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation

Probab=97.32  E-value=0.00084  Score=55.68  Aligned_cols=54  Identities=22%  Similarity=0.373  Sum_probs=35.7

Q ss_pred             cEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH
Q psy14559        167 RTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK  224 (405)
Q Consensus       167 rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~  224 (405)
                      ..|++.+++..++.++|++.|++||.|..|.+..    .-..|||-|.+.++|+.|+.
T Consensus         2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~----G~~~g~VRf~~~~~A~~a~~   55 (105)
T PF08777_consen    2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSR----GDTEGYVRFKTPEAAQKALE   55 (105)
T ss_dssp             -EEEEEE--SS--HHHHHHHT-SS--EEEEE--T----T-SEEEEEESS---HHHHHH
T ss_pred             eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecC----CCCEEEEEECCcchHHHHHH
Confidence            3688999999999999999999999999998843    23479999999999999986

It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.

>KOG0226|consensus

Probab=97.31  E-value=0.00024  Score=66.55  Aligned_cols=78  Identities=10%  Similarity=0.104  Sum_probs=67.3

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      +.....||.|.|...++.+.|-..|.+|-.....+++   +++.+++++||+||.|.+..|+..|++.+|+.+.+...+.
T Consensus       187 ~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akvi---RdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpik  263 (290)
T KOG0226|consen  187 DEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVI---RDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIK  263 (290)
T ss_pred             ccccceeecccccccccHHHHHHHHHhccchhhcccc---ccccccccccceeeeecCHHHHHHHHHhhcccccccchhH
Confidence            4456889999999999999999999999888877774   4556899999999999999999999998888888776654


Q ss_pred             e
Q psy14559         88 T   88 (405)
Q Consensus        88 v   88 (405)
                      .
T Consensus       264 l  264 (290)
T KOG0226|consen  264 L  264 (290)
T ss_pred             h
Confidence            4

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=97.30  E-value=0.00059  Score=66.27  Aligned_cols=76  Identities=20%  Similarity=0.357  Sum_probs=62.0

Q ss_pred             CcEEEEeCCCCCCCHHH------HHHHHhcCCCeeEEEEeccC---CCCCc-E-EEEEECCHHHHHHHHH-hCCceeCCe
Q psy14559        166 RRTLVAINIEESVSPQE------LVDFFQKVGTVNYIRFCTRE---NDTNK-Y-ALVEFSDQACVIPALK-LNGTNLKGK  233 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~------L~~~F~~~G~I~~i~i~~~~---~~~rg-~-afV~F~~~e~A~~Al~-lng~~l~g~  233 (405)
                      +.-+||-+||+.+..|+      -.++|++||+|..|.+..++   +...+ + .||+|.+.++|.+|+. .+|..+.||
T Consensus       114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr  193 (480)
T COG5175         114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR  193 (480)
T ss_pred             cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence            55799999999988777      35899999999999885442   11122 2 3999999999999998 999999999


Q ss_pred             eEEEeecc
Q psy14559        234 TLQMFHST  241 (405)
Q Consensus       234 ~i~V~~a~  241 (405)
                      .|+-.+..
T Consensus       194 ~lkatYGT  201 (480)
T COG5175         194 VLKATYGT  201 (480)
T ss_pred             eEeeecCc
Confidence            99988764

>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []

Probab=97.26  E-value=0.0015  Score=53.66  Aligned_cols=75  Identities=13%  Similarity=0.179  Sum_probs=53.5

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEe-cc--------CCCCCcEEEEEECCHHHHHHHHHhCCceeCCe-eE
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFC-TR--------ENDTNKYALVEFSDQACVIPALKLNGTNLKGK-TL  235 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~-~~--------~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~-~i  235 (405)
                      .+.|.|-++|+.. ...+.+.|++||.|.+..-. ++        ......+-.|+|.++.+|.+||..||..+.|. .+
T Consensus         6 ~~wVtVFGfp~~~-~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~mv   84 (100)
T PF05172_consen    6 ETWVTVFGFPPSA-SNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLMV   84 (100)
T ss_dssp             CCEEEEE---GGG-HHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEEE
T ss_pred             CeEEEEEccCHHH-HHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEEE
Confidence            5679999999984 46677999999999887511 10        11245689999999999999999999999986 45


Q ss_pred             EEeecc
Q psy14559        236 QMFHST  241 (405)
Q Consensus       236 ~V~~a~  241 (405)
                      -|.+.+
T Consensus        85 GV~~~~   90 (100)
T PF05172_consen   85 GVKPCD   90 (100)
T ss_dssp             EEEE-H
T ss_pred             EEEEcH
Confidence            566653

This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.

>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation

Probab=97.19  E-value=0.00087  Score=55.58  Aligned_cols=54  Identities=13%  Similarity=0.305  Sum_probs=35.1

Q ss_pred             cEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHh
Q psy14559         12 KVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQH   74 (405)
Q Consensus        12 ~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~   74 (405)
                      +.|+|.|++..++.++|+++|+.||.|.-|.+ .        ....-|||.|.++++|+.|+.
T Consensus         2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~-~--------~G~~~g~VRf~~~~~A~~a~~   55 (105)
T PF08777_consen    2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDF-S--------RGDTEGYVRFKTPEAAQKALE   55 (105)
T ss_dssp             -EEEEEE--SS--HHHHHHHT-SS--EEEEE-----------TT-SEEEEEESS---HHHHHH
T ss_pred             eEEEEecCCCCcCHHHHHHHHHhcCCcceEEe-c--------CCCCEEEEEECCcchHHHHHH
Confidence            57999999999999999999999999988877 1        124469999999999998875

It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.

>KOG2193|consensus

Probab=97.18  E-value=3.6e-05  Score=76.46  Aligned_cols=149  Identities=19%  Similarity=0.221  Sum_probs=104.6

Q ss_pred             cEEEEcCCCCCCCHHHHHHHhccCCc--eEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCC-ccccceeEEe
Q psy14559         12 KVVQVANIAPQATRDQMQTLFGYLGK--VEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNT-VFIDRALVVT   88 (405)
Q Consensus        12 ~tLfVgNLp~~vTeedLr~lFs~~G~--I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~-~~~~~~~~vv   88 (405)
                      ..+|++||++.++..+|..+|...-.  -..+-           ...||+||.+.+..-|..|+..+++ ..+.++..-+
T Consensus         2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl-----------~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~   70 (584)
T KOG2193|consen    2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFL-----------VKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEV   70 (584)
T ss_pred             CcccccccCCCCChHHHHHHhccccCCCCccee-----------eecceeeccCCchhhhhhhHHhhchhhhhcCceeec
Confidence            36899999999999999999986411  11111           1378999999999988888754432 2222211111


Q ss_pred             ecCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccCcE
Q psy14559         89 PYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRT  168 (405)
Q Consensus        89 ~~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~rt  168 (405)
                      +..                                                                 + ..  ....|+
T Consensus        71 ~~s-----------------------------------------------------------------v-~k--kqrsrk   82 (584)
T KOG2193|consen   71 EHS-----------------------------------------------------------------V-PK--KQRSRK   82 (584)
T ss_pred             cch-----------------------------------------------------------------h-hH--HHHhhh
Confidence            100                                                                 0 00  011466


Q ss_pred             EEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q psy14559        169 LVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHS  240 (405)
Q Consensus       169 vfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a  240 (405)
                      +-+.|+|+...++-|..+..+||.+..|..+.. ....-..-|+|...+.+..|+. |||..+....++|.+-
T Consensus        83 ~Qirnippql~wevld~Ll~qyg~ve~~eqvnt-~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Yi  154 (584)
T KOG2193|consen   83 IQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNT-DSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYI  154 (584)
T ss_pred             hhHhcCCHHHHHHHHHHHHhccCCHhHhhhhcc-chHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccC
Confidence            889999999999999999999999999976332 1112234578999999999998 9999999888888764

>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2

Probab=96.91  E-value=0.0028  Score=51.71  Aligned_cols=59  Identities=20%  Similarity=0.254  Sum_probs=46.6

Q ss_pred             cEEEEcCCCCCCCHHHHHHHhcc--CCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHH
Q psy14559         12 KVVQVANIAPQATRDQMQTLFGY--LGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQ   73 (405)
Q Consensus        12 ~tLfVgNLp~~vTeedLr~lFs~--~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al   73 (405)
                      .||.|+|||...|.++|.+++..  .|...=+-+ |.  |..+..+.|||||.|.++++|..-.
T Consensus         2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YL-Pi--Df~~~~N~GYAFVNf~~~~~~~~F~   62 (97)
T PF04059_consen    2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYL-PI--DFKNKCNLGYAFVNFTSPQAAIRFY   62 (97)
T ss_pred             eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEe-ee--eccCCCceEEEEEEcCCHHHHHHHH
Confidence            48999999999999999998865  365555555 54  3456778999999999999877554

It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).

>KOG4307|consensus

Probab=96.91  E-value=0.0027  Score=66.92  Aligned_cols=71  Identities=21%  Similarity=0.322  Sum_probs=62.6

Q ss_pred             EEEEeCCCCCCCHHHHHHHHhcCCCe-eEEEE-eccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEe
Q psy14559        168 TLVAINIEESVSPQELVDFFQKVGTV-NYIRF-CTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMF  238 (405)
Q Consensus       168 tvfV~NLp~~~tee~L~~~F~~~G~I-~~i~i-~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~  238 (405)
                      -|-|.|+|++++-+|+.+||..|-.+ .+|.+ ..|.|...|-|-|-|++.++|..|.. |+++.|..|.+++.
T Consensus       869 V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~  942 (944)
T KOG4307|consen  869 VLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLR  942 (944)
T ss_pred             EEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEE
Confidence            67899999999999999999999755 34555 35688999999999999999999988 99999999988875

>KOG4210|consensus

Probab=96.80  E-value=0.00088  Score=65.33  Aligned_cols=75  Identities=19%  Similarity=0.236  Sum_probs=61.8

Q ss_pred             CCCCcEEE-EcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeE
Q psy14559          8 PVKTKVVQ-VANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALV   86 (405)
Q Consensus         8 ~~~~~tLf-VgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~   86 (405)
                      .....++| |+||+.++|+++|+..|..+|.|..+++ +...  .++.++++|||.|.+..+...++.. ....+++...
T Consensus       181 ~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~-~~~~--~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~  256 (285)
T KOG4210|consen  181 SGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRL-PTDE--ESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPL  256 (285)
T ss_pred             cCccccceeecccccccchHHHhhhccCcCcceeecc-CCCC--CccchhhhhhhhhhhchhHHHHhhc-ccCcccCccc
Confidence            34456666 9999999999999999999999999999 6543  5788999999999999999988876 5555554433

>KOG1855|consensus

Probab=96.56  E-value=0.0021  Score=64.44  Aligned_cols=72  Identities=14%  Similarity=0.286  Sum_probs=56.9

Q ss_pred             CCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeec---cCCCCCC-------ccccEEEEEecchhhHHHHHhccCC
Q psy14559          9 VKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPI---ARDVSIP-------VQSRICYVKFFDEKCVGISQHLTNT   78 (405)
Q Consensus         9 ~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~---~~d~~~~-------~~~g~aFV~F~~~e~A~~Al~~~n~   78 (405)
                      -+.+||.+-|||.+-.-+.|.++|+.||.|.+|+|..-   ..+.+-.       ..+-+|+|+|...+.|.+|-+++|.
T Consensus       229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~  308 (484)
T KOG1855|consen  229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP  308 (484)
T ss_pred             cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence            46799999999999999999999999999999999432   1111111       1256899999999999999988765


Q ss_pred             cc
Q psy14559         79 VF   80 (405)
Q Consensus        79 ~~   80 (405)
                      .-
T Consensus       309 e~  310 (484)
T KOG1855|consen  309 EQ  310 (484)
T ss_pred             hh
Confidence            43

>KOG1855|consensus

Probab=96.55  E-value=0.0035  Score=62.84  Aligned_cols=62  Identities=32%  Similarity=0.423  Sum_probs=53.0

Q ss_pred             cCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc-------CCC--------CCcEEEEEECCHHHHHHHHHhC
Q psy14559        165 IRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR-------END--------TNKYALVEFSDQACVIPALKLN  226 (405)
Q Consensus       165 ~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~-------~~~--------~rg~afV~F~~~e~A~~Al~ln  226 (405)
                      ..+||.+.|||.+-.-+-|.++|+.||.|..|+|+..       .+.        .+-+|+|+|...+.|.+|.++.
T Consensus       230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~  306 (484)
T KOG1855|consen  230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL  306 (484)
T ss_pred             ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence            4799999999999999999999999999999999643       111        2456999999999999999844

>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function

Probab=96.52  E-value=0.012  Score=51.39  Aligned_cols=54  Identities=33%  Similarity=0.550  Sum_probs=46.4

Q ss_pred             HHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeecc
Q psy14559        182 ELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHST  241 (405)
Q Consensus       182 ~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~  241 (405)
                      +|.+.|..||++.-+|+..      +--.|+|.+-++|.+|+.++|..+.|+.|+|....
T Consensus        52 ~ll~~~~~~GevvLvRfv~------~~mwVTF~dg~sALaals~dg~~v~g~~l~i~LKt  105 (146)
T PF08952_consen   52 ELLQKFAQYGEVVLVRFVG------DTMWVTFRDGQSALAALSLDGIQVNGRTLKIRLKT  105 (146)
T ss_dssp             HHHHHHHCCS-ECEEEEET------TCEEEEESSCHHHHHHHHGCCSEETTEEEEEEE--
T ss_pred             HHHHHHHhCCceEEEEEeC------CeEEEEECccHHHHHHHccCCcEECCEEEEEEeCC
Confidence            7888999999999998864      24789999999999999999999999999998854

; PDB: 1UFW_A 2DNR_A.

>KOG3152|consensus

Probab=96.40  E-value=0.0021  Score=60.49  Aligned_cols=68  Identities=22%  Similarity=0.291  Sum_probs=56.5

Q ss_pred             cEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEec-c-C--------CCCCc----EEEEEECCHHHHHHHHH-hCCceeC
Q psy14559        167 RTLVAINIEESVSPQELVDFFQKVGTVNYIRFCT-R-E--------NDTNK----YALVEFSDQACVIPALK-LNGTNLK  231 (405)
Q Consensus       167 rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~-~-~--------~~~rg----~afV~F~~~e~A~~Al~-lng~~l~  231 (405)
                      .-||++|||+.+...-|+++|++||.|-.|.+.. + .        |.+++    -|.|+|.+...|..... |||..|+
T Consensus        75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Ig  154 (278)
T KOG3152|consen   75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIG  154 (278)
T ss_pred             eEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccC
Confidence            4799999999999999999999999999999842 2 1        22222    26799999999988776 9999999


Q ss_pred             Cee
Q psy14559        232 GKT  234 (405)
Q Consensus       232 g~~  234 (405)
                      |++
T Consensus       155 gkk  157 (278)
T KOG3152|consen  155 GKK  157 (278)
T ss_pred             CCC
Confidence            985

>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []

Probab=96.30  E-value=0.016  Score=47.58  Aligned_cols=81  Identities=14%  Similarity=0.128  Sum_probs=54.5

Q ss_pred             CCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCC----CCCCccccEEEEEecchhhHHHHHhccCCcccccee
Q psy14559         10 KTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARD----VSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRAL   85 (405)
Q Consensus        10 ~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d----~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~   85 (405)
                      ..+-|.|=+.|+. .-..+-+.|++||+|.+..-..+...    .......++-.|.|.++.+|..||..++..+-+..+
T Consensus         5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~m   83 (100)
T PF05172_consen    5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLM   83 (100)
T ss_dssp             GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEE
T ss_pred             CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEE
Confidence            3455777788888 45678889999999988751000000    001234779999999999999999999999888888


Q ss_pred             EEeecC
Q psy14559         86 VVTPYN   91 (405)
Q Consensus        86 ~vv~~~   91 (405)
                      +.+++.
T Consensus        84 vGV~~~   89 (100)
T PF05172_consen   84 VGVKPC   89 (100)
T ss_dssp             EEEEE-
T ss_pred             EEEEEc
Confidence            877755

This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.

>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes

Probab=96.24  E-value=0.018  Score=45.43  Aligned_cols=65  Identities=12%  Similarity=0.182  Sum_probs=41.5

Q ss_pred             cEEEEcCCCCCCCHHHHH----HHhccCCc-eEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhcc-CCcccccee
Q psy14559         12 KVVQVANIAPQATRDQMQ----TLFGYLGK-VEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLT-NTVFIDRAL   85 (405)
Q Consensus        12 ~tLfVgNLp~~vTeedLr----~lFs~~G~-I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~-n~~~~~~~~   85 (405)
                      ..|+|.|||.+.....|+    .|+..||- |.+|             +.+.|+|.|.+.+.|..|++.+ +...++..+
T Consensus         3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v-------------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI   69 (90)
T PF11608_consen    3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV-------------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKI   69 (90)
T ss_dssp             EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE---------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--
T ss_pred             cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE-------------eCCEEEEEeCCHHHHHHHHHhhcccccccceE
Confidence            469999999998877654    57778865 4443             2567999999999999999755 555666666


Q ss_pred             EEee
Q psy14559         86 VVTP   89 (405)
Q Consensus        86 ~vv~   89 (405)
                      .+..
T Consensus        70 ~v~~   73 (90)
T PF11608_consen   70 SVSF   73 (90)
T ss_dssp             EEES
T ss_pred             EEEE
Confidence            5544

Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.

>KOG1996|consensus

Probab=96.09  E-value=0.015  Score=55.84  Aligned_cols=61  Identities=21%  Similarity=0.274  Sum_probs=49.3

Q ss_pred             HHHHHHHhcCCCeeEEEEeccCCC---CCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559        181 QELVDFFQKVGTVNYIRFCTREND---TNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST  241 (405)
Q Consensus       181 e~L~~~F~~~G~I~~i~i~~~~~~---~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~  241 (405)
                      +++++-+++||.|..|.|-..++.   ..---||+|...++|.+|+. |||..|+||.++-.+.+
T Consensus       301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn  365 (378)
T KOG1996|consen  301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN  365 (378)
T ss_pred             HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence            578888999999999877443332   23347999999999999998 99999999988876654

>KOG3152|consensus

Probab=96.09  E-value=0.0034  Score=59.10  Aligned_cols=72  Identities=22%  Similarity=0.270  Sum_probs=53.7

Q ss_pred             CCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCC---------CCCCccccEEEEEecchhhHHHHHhccCCcc
Q psy14559         10 KTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARD---------VSIPVQSRICYVKFFDEKCVGISQHLTNTVF   80 (405)
Q Consensus        10 ~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d---------~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~   80 (405)
                      .+.+||++|||+.+....||++|+.||+|-.|-+-|.+..         ......-.-|+|+|.+...|...-.++|+.-
T Consensus        73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~  152 (278)
T KOG3152|consen   73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP  152 (278)
T ss_pred             cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence            5689999999999999999999999999999998655431         1112223347899999999887654444333


Q ss_pred             c
Q psy14559         81 I   81 (405)
Q Consensus        81 ~   81 (405)
                      +
T Consensus       153 I  153 (278)
T KOG3152|consen  153 I  153 (278)
T ss_pred             c
Confidence            3

>KOG4849|consensus

Probab=96.04  E-value=0.0062  Score=59.57  Aligned_cols=75  Identities=16%  Similarity=0.281  Sum_probs=61.5

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCC--CeeEEEEe--ccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVG--TVNYIRFC--TRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHS  240 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G--~I~~i~i~--~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a  240 (405)
                      +-.+|||||-|.+|+++|.+.....|  .+.++++-  +..|++||||+|...+..++++-++ |--..|.|..=.|...
T Consensus        80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~  159 (498)
T KOG4849|consen   80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY  159 (498)
T ss_pred             eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence            44799999999999999999999888  55666653  3378999999999999999999988 8778888876555443

>KOG2314|consensus

Probab=95.84  E-value=0.012  Score=61.01  Aligned_cols=75  Identities=23%  Similarity=0.276  Sum_probs=59.9

Q ss_pred             CcEEEEeCCCCCCCH------HHHHHHHhcCCCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHH-hCCceeC-CeeEE
Q psy14559        166 RRTLVAINIEESVSP------QELVDFFQKVGTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALK-LNGTNLK-GKTLQ  236 (405)
Q Consensus       166 ~rtvfV~NLp~~~te------e~L~~~F~~~G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~-lng~~l~-g~~i~  236 (405)
                      ...|+|.|+|---..      .-|..+|+++|+|....++-+ .|..+||.|++|.+..+|+.|++ |||+.|. .++..
T Consensus        58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~  137 (698)
T KOG2314|consen   58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFF  137 (698)
T ss_pred             ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEE
Confidence            467899999873222      346789999999999998744 66799999999999999999999 9998887 44556


Q ss_pred             Eeec
Q psy14559        237 MFHS  240 (405)
Q Consensus       237 V~~a  240 (405)
                      |..-
T Consensus       138 v~~f  141 (698)
T KOG2314|consen  138 VRLF  141 (698)
T ss_pred             eehh
Confidence            5544

>KOG2202|consensus

Probab=95.82  E-value=0.004  Score=58.67  Aligned_cols=61  Identities=18%  Similarity=0.302  Sum_probs=50.9

Q ss_pred             HHHHHHHh-cCCCeeEEEEeccC-CCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559        181 QELVDFFQ-KVGTVNYIRFCTRE-NDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST  241 (405)
Q Consensus       181 e~L~~~F~-~~G~I~~i~i~~~~-~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~  241 (405)
                      +++...|+ +||+|..+.+...- ..-.|=+||.|...++|++|+. |||..+.|++|....+.
T Consensus        83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p  146 (260)
T KOG2202|consen   83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP  146 (260)
T ss_pred             HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence            45556666 89999999886552 3457889999999999999999 99999999999988764

>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN)

Probab=95.25  E-value=0.07  Score=42.11  Aligned_cols=58  Identities=12%  Similarity=0.271  Sum_probs=42.5

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccC
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTN   77 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n   77 (405)
                      |......+|+ .|......||.++|+.||.|.=-.|    .|.       -|||...+.+.|..|+...+
T Consensus         6 P~RdHVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi----~dT-------SAfV~l~~r~~~~~v~~~~~   63 (87)
T PF08675_consen    6 PSRDHVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWI----NDT-------SAFVALHNRDQAKVVMNTLK   63 (87)
T ss_dssp             -SGCCEEEEE---TT--HHHHHHHCCCCCCEEEEEE----CTT-------EEEEEECCCHHHHHHHHHHT
T ss_pred             CCcceEEEEe-CchHhhhhhHHHHhccCCcEEEEEE----cCC-------cEEEEeecHHHHHHHHHHhc
Confidence            4456788888 9999999999999999999765555    222       39999999999998876543

; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=95.02  E-value=0.043  Score=53.67  Aligned_cols=74  Identities=15%  Similarity=0.323  Sum_probs=54.2

Q ss_pred             cEEEEcCCCCCCCHHH----H--HHHhccCCceEEEEEeeccCCCCCCccccEE--EEEecchhhHHHHHhccCCccccc
Q psy14559         12 KVVQVANIAPQATRDQ----M--QTLFGYLGKVEDLRLYPIARDVSIPVQSRIC--YVKFFDEKCVGISQHLTNTVFIDR   83 (405)
Q Consensus        12 ~tLfVgNLp~~vTeed----L--r~lFs~~G~I~~v~i~~~~~d~~~~~~~g~a--FV~F~~~e~A~~Al~~~n~~~~~~   83 (405)
                      .-+||-+||+.+-.|+    |  .++|++||+|..|.+ -+.. .+.....+.+  ||.|.+.+||..++...++.+.|+
T Consensus       115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvv-Nkkt-~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG  192 (480)
T COG5175         115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVV-NKKT-SSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG  192 (480)
T ss_pred             ceeEEecCCCCCCcccccccccchhhhhhccceeEEEe-cccc-cccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence            4589999999987776    3  369999999999988 2211 1212223334  999999999999998887777777


Q ss_pred             eeEE
Q psy14559         84 ALVV   87 (405)
Q Consensus        84 ~~~v   87 (405)
                      +.+-
T Consensus       193 r~lk  196 (480)
T COG5175         193 RVLK  196 (480)
T ss_pred             ceEe
Confidence            6654

>KOG0129|consensus

Probab=94.83  E-value=0.096  Score=54.00  Aligned_cols=82  Identities=15%  Similarity=0.198  Sum_probs=64.3

Q ss_pred             CCCCCcEEEEcCCCCCCCHHHHHHHhc-cCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhc----cCCccc
Q psy14559          7 APVKTKVVQVANIAPQATRDQMQTLFG-YLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHL----TNTVFI   81 (405)
Q Consensus         7 ~~~~~~tLfVgNLp~~vTeedLr~lFs-~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~----~n~~~~   81 (405)
                      .-.+.+|||||+||--+|-++|-.+|+ -||.|.-+-|   |.|...+..+|-|=|.|.+..+..+|+..    .+...+
T Consensus       366 ~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGI---DtD~k~KYPkGaGRVtFsnqqsYi~AIsarFvql~h~d~  442 (520)
T KOG0129|consen  366 PIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGI---DTDPKLKYPKGAGRVTFSNQQAYIKAISARFVQLDHTDI  442 (520)
T ss_pred             ccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEe---ccCcccCCCCCcceeeecccHHHHHHHhhheEEEecccc
Confidence            356789999999999999999999999 6999998888   34445677899999999999998888743    233444


Q ss_pred             cceeEEeecC
Q psy14559         82 DRALVVTPYN   91 (405)
Q Consensus        82 ~~~~~vv~~~   91 (405)
                      ++++-|.|+.
T Consensus       443 ~KRVEIkPYv  452 (520)
T KOG0129|consen  443 DKRVEIKPYV  452 (520)
T ss_pred             ceeeeeccee
Confidence            5555555554

>KOG2314|consensus

Probab=94.60  E-value=0.081  Score=55.05  Aligned_cols=73  Identities=16%  Similarity=0.182  Sum_probs=55.2

Q ss_pred             CCCCcEEEEcCCCC--CCCHHH----HHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccc
Q psy14559          8 PVKTKVVQVANIAP--QATRDQ----MQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFI   81 (405)
Q Consensus         8 ~~~~~tLfVgNLp~--~vTeed----Lr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~   81 (405)
                      .+-...|+|.|+|-  ...-+-    |..+|+++|+|..+-+ |.+.   .+.++||.|++|++..+|+.|++..|+.-+
T Consensus        55 eg~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~-P~~e---~ggtkG~lf~E~~~~~~A~~aVK~l~G~~l  130 (698)
T KOG2314|consen   55 EGFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYY-PIDE---EGGTKGYLFVEYASMRDAKKAVKSLNGKRL  130 (698)
T ss_pred             CCcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceee-ccCc---cCCeeeEEEEEecChhhHHHHHHhccccee
Confidence            45678899999984  233333    4468999999999877 6544   366899999999999999999976666555


Q ss_pred             cce
Q psy14559         82 DRA   84 (405)
Q Consensus        82 ~~~   84 (405)
                      +..
T Consensus       131 dkn  133 (698)
T KOG2314|consen  131 DKN  133 (698)
T ss_pred             ccc
Confidence            443

>KOG4849|consensus

Probab=94.32  E-value=0.039  Score=54.13  Aligned_cols=82  Identities=10%  Similarity=0.069  Sum_probs=62.0

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCC--ceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCcccccee
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLG--KVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRAL   85 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G--~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~   85 (405)
                      .+...-+|||||-|.+|++||-+-....|  .|.+++++.   +..+++++|||.|...+..+++.-+..+-+..+.+.-
T Consensus        77 ~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFE---NR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~  153 (498)
T KOG4849|consen   77 EGRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFE---NRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQS  153 (498)
T ss_pred             cCceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhh---cccCCcccceEEEEecchHHHHHHHHhcccceecCCC
Confidence            44556699999999999999998877655  477777743   3467999999999999999999888877666655444


Q ss_pred             EEeecCC
Q psy14559         86 VVTPYNS   92 (405)
Q Consensus        86 ~vv~~~~   92 (405)
                      -+|...+
T Consensus       154 P~V~~~N  160 (498)
T KOG4849|consen  154 PTVLSYN  160 (498)
T ss_pred             Ceeeccc
Confidence            3443333

>KOG2193|consensus

Probab=94.26  E-value=0.053  Score=54.52  Aligned_cols=70  Identities=29%  Similarity=0.402  Sum_probs=55.3

Q ss_pred             EEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCC-ceeCCeeEEEeecc
Q psy14559        168 TLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNG-TNLKGKTLQMFHST  241 (405)
Q Consensus       168 tvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng-~~l~g~~i~V~~a~  241 (405)
                      ++|++||.+..+..+|..+|...-.-.+=.+.    ...|||||.+.+...|.+|++ ++| ..+.|+++.|.++-
T Consensus         3 klyignL~p~~~psdl~svfg~ak~~~~g~fl----~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv   74 (584)
T KOG2193|consen    3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFL----VKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV   74 (584)
T ss_pred             cccccccCCCCChHHHHHHhccccCCCCccee----eecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence            68999999999999999999854100011111    135899999999999999999 998 58899999998874

>KOG2253|consensus

Probab=94.13  E-value=0.067  Score=56.63  Aligned_cols=67  Identities=24%  Similarity=0.200  Sum_probs=57.9

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEee
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFH  239 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~  239 (405)
                      .-++||+|+...+..+-++.+...||.|.++...       .|+|+.|.+......|+. ++...++|..+.+..
T Consensus        40 ~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~-------~fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~  107 (668)
T KOG2253|consen   40 RDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRD-------KFGFCEFLKHIGDLRASRLLTELNIDDQKLIENV  107 (668)
T ss_pred             CceeEecchhhhhhHHHHHHHHhhCCcchhhhhh-------hhcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence            4689999999999999999999999999888652       299999999999999998 777788887766554

>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function

Probab=93.98  E-value=0.32  Score=36.33  Aligned_cols=53  Identities=17%  Similarity=0.244  Sum_probs=43.3

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcC---CCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKV---GTVNYIRFCTRENDTNKYALVEFSDQACVIPALK  224 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~---G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~  224 (405)
                      ..+|+|.+++. ++.++++.+|..|   .....|..+.|+     .|-|.|.+.+.|.+||.
T Consensus         5 peavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDt-----ScNvvf~d~~~A~~AL~   60 (62)
T PF10309_consen    5 PEAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDT-----SCNVVFKDEETAARALV   60 (62)
T ss_pred             eceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCC-----cEEEEECCHHHHHHHHH
Confidence            34799999965 8889999999988   234577777764     48999999999999986

>KOG1995|consensus

Probab=93.96  E-value=0.069  Score=52.72  Aligned_cols=77  Identities=12%  Similarity=0.168  Sum_probs=60.8

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEE--------EEEeeccCCCCCCccccEEEEEecchhhHHHHHhc-cCC
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVED--------LRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHL-TNT   78 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~--------v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~-~n~   78 (405)
                      ....-||||-+||.++++.+|.++|.+||.|..        |+||   +++.|...++-|.|.|.+...|+.|+.. .+.
T Consensus        63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y---~dkeT~~~KGeatvS~~D~~~akaai~~~agk  139 (351)
T KOG1995|consen   63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIY---TDKETGAPKGEATVSYEDPPAAKAAIEWFAGK  139 (351)
T ss_pred             ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhcc---ccccccCcCCceeeeecChhhhhhhhhhhccc
Confidence            445689999999999999999999999999853        3442   3446889999999999999999999864 445


Q ss_pred             ccccceeEE
Q psy14559         79 VFIDRALVV   87 (405)
Q Consensus        79 ~~~~~~~~v   87 (405)
                      .|.+..+.+
T Consensus       140 df~gn~ikv  148 (351)
T KOG1995|consen  140 DFCGNTIKV  148 (351)
T ss_pred             cccCCCchh
Confidence            555544443

>KOG0115|consensus

Probab=93.35  E-value=0.071  Score=50.43  Aligned_cols=61  Identities=18%  Similarity=0.162  Sum_probs=54.1

Q ss_pred             cEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhcc
Q psy14559         12 KVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLT   76 (405)
Q Consensus        12 ~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~   76 (405)
                      ..|||.||+.-++.+.+..-|+.||+|..-.++..++    ++..+-++|.|.+.-.+.+|+...
T Consensus        32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r----~k~t~eg~v~~~~k~~a~~a~rr~   92 (275)
T KOG0115|consen   32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDR----GKPTREGIVEFAKKPNARKAARRC   92 (275)
T ss_pred             ceEEEEecchhhhhHHHHHhhhhcCccchheeeeccc----ccccccchhhhhcchhHHHHHHHh
Confidence            7899999999999999999999999999988866655    667888999999999999987543

>KOG0115|consensus

Probab=93.15  E-value=0.1  Score=49.41  Aligned_cols=74  Identities=16%  Similarity=0.258  Sum_probs=59.5

Q ss_pred             cEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEE-eccCCCCCcEEEEEECCHHHHHHHHH-h--CC--ceeCCeeEEEeec
Q psy14559        167 RTLVAINIEESVSPQELVDFFQKVGTVNYIRF-CTRENDTNKYALVEFSDQACVIPALK-L--NG--TNLKGKTLQMFHS  240 (405)
Q Consensus       167 rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i-~~~~~~~rg~afV~F~~~e~A~~Al~-l--ng--~~l~g~~i~V~~a  240 (405)
                      ..|||.||..-++.+.|..-|+.||+|....+ +.+.++..+-++|.|.+.-.+.+|+. .  .|  ....+++.-|.+.
T Consensus        32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~  111 (275)
T KOG0115|consen   32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPM  111 (275)
T ss_pred             ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChh
Confidence            57999999999999999999999999988766 45577888999999999999999987 3  22  2334555555544

>KOG0112|consensus

Probab=93.05  E-value=0.023  Score=61.78  Aligned_cols=77  Identities=19%  Similarity=0.213  Sum_probs=63.3

Q ss_pred             ccCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q psy14559        164 EIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHS  240 (405)
Q Consensus       164 ~~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a  240 (405)
                      ...+|||+|||+..+++.+|+..|..+|.|..|.|-.. .+....||||.|.+...+..|+. +.|..|.--.+++.+.
T Consensus       370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG  448 (975)
T KOG0112|consen  370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG  448 (975)
T ss_pred             hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence            34689999999999999999999999999999998433 45556799999999999999987 8887776445555444

>KOG4285|consensus

Probab=92.47  E-value=0.39  Score=46.53  Aligned_cols=69  Identities=16%  Similarity=0.246  Sum_probs=54.2

Q ss_pred             EEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCceeCCe-eEEEeecc
Q psy14559        168 TLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALKLNGTNLKGK-TLQMFHST  241 (405)
Q Consensus       168 tvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~-~i~V~~a~  241 (405)
                      =|-|-++|+.-. .-|...|++||+|.+...    ...-.|-+|-|.+..+|++||..||+.|+|. .|-|....
T Consensus       199 WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~----~~ngNwMhirYssr~~A~KALskng~ii~g~vmiGVkpCt  268 (350)
T KOG4285|consen  199 WVTVFGFPPGQV-SIVLNLFSRCGEVVKHVT----PSNGNWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPCT  268 (350)
T ss_pred             eEEEeccCccch-hHHHHHHHhhCeeeeeec----CCCCceEEEEecchhHHHHhhhhcCeeeccceEEeeeecC
Confidence            355668887655 456688999999988754    2445699999999999999999999999987 45676643

>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []

Probab=92.42  E-value=1.2  Score=37.30  Aligned_cols=65  Identities=15%  Similarity=0.129  Sum_probs=49.0

Q ss_pred             EEEEeCCCCCCCHHHHHHHHhcC-CCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCC
Q psy14559        168 TLVAINIEESVSPQELVDFFQKV-GTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKG  232 (405)
Q Consensus       168 tvfV~NLp~~~tee~L~~~F~~~-G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g  232 (405)
                      .+.+...|+-++-++|..+.+.+ ..|..+++.++...++-.+.+.|.+.++|..-.. +||+.|..
T Consensus        15 ~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns   81 (110)
T PF07576_consen   15 LCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS   81 (110)
T ss_pred             EEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence            34444555556666776666665 4677888888866688899999999999999887 99987764

These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.

>KOG2202|consensus

Probab=91.73  E-value=0.062  Score=50.84  Aligned_cols=59  Identities=17%  Similarity=0.117  Sum_probs=42.7

Q ss_pred             HHHHHHhc-cCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEe
Q psy14559         26 DQMQTLFG-YLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVT   88 (405)
Q Consensus        26 edLr~lFs-~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv   88 (405)
                      +++...|+ +||+|+++++ -.+   ....-.|-+||.|...++|++|+...|..++.+..+..
T Consensus        83 Ed~f~E~~~kygEiee~~V-c~N---l~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~a  142 (260)
T KOG2202|consen   83 EDVFTELEDKYGEIEELNV-CDN---LGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHA  142 (260)
T ss_pred             HHHHHHHHHHhhhhhhhhh-hcc---cchhhhhhhhhhcccHHHHHHHHHHHcCccccCCccee
Confidence            45555566 8999999987 221   12345888999999999999999877766665555443

>KOG1996|consensus

Probab=91.56  E-value=0.41  Score=46.24  Aligned_cols=66  Identities=14%  Similarity=0.126  Sum_probs=48.2

Q ss_pred             HHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEeecCC
Q psy14559         25 RDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTPYNS   92 (405)
Q Consensus        25 eedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~~~~   92 (405)
                      ++++++-+++||.|..|.|+-. .+..... .---||+|...++|.+|+-.+|+.|++++...-.+++
T Consensus       300 ede~keEceKyg~V~~viifei-p~~p~de-avRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn  365 (378)
T KOG1996|consen  300 EDETKEECEKYGKVGNVIIFEI-PSQPEDE-AVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN  365 (378)
T ss_pred             HHHHHHHHHhhcceeeEEEEec-CCCccch-hheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence            4567889999999999988543 2222111 2347999999999999998888888887765544444

>KOG2416|consensus

Probab=91.55  E-value=0.088  Score=55.09  Aligned_cols=62  Identities=21%  Similarity=0.371  Sum_probs=50.0

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhc-cCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCC
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFG-YLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNT   78 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs-~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~   78 (405)
                      ...+.+|+|.||---.|.-+|+.|.. .+|.|++.+|     |.    -+..|||.|.+.++|....+.+++
T Consensus       441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm-----Dk----IKShCyV~yss~eEA~atr~Alhn  503 (718)
T KOG2416|consen  441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM-----DK----IKSHCYVSYSSVEEAAATREALHN  503 (718)
T ss_pred             CCccceEeeecccccchHHHHHHHHhhccCchHHHHH-----HH----hhcceeEecccHHHHHHHHHHHhc
Confidence            34578999999999999999999998 6888999855     22    266799999999998876654433

>KOG2068|consensus

Probab=91.16  E-value=0.081  Score=51.88  Aligned_cols=76  Identities=11%  Similarity=0.238  Sum_probs=59.6

Q ss_pred             CcEEEEeCCCCCCCHHHH---HHHHhcCCCeeEEEEeccC----C-CCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEE
Q psy14559        166 RRTLVAINIEESVSPQEL---VDFFQKVGTVNYIRFCTRE----N-DTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQ  236 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L---~~~F~~~G~I~~i~i~~~~----~-~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~  236 (405)
                      ++-+||-+|+.....+++   .++|++||.|..|....++    + ....-+||+|...++|..||. .+|..+.|+.++
T Consensus        77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk  156 (327)
T KOG2068|consen   77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK  156 (327)
T ss_pred             hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence            456899999988766554   3689999999999886543    1 122348999999999999999 999999999877


Q ss_pred             Eeecc
Q psy14559        237 MFHST  241 (405)
Q Consensus       237 V~~a~  241 (405)
                      ..+..
T Consensus       157 a~~gt  161 (327)
T KOG2068|consen  157 ASLGT  161 (327)
T ss_pred             HhhCC
Confidence            66553

>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons

Probab=90.47  E-value=0.4  Score=43.44  Aligned_cols=74  Identities=14%  Similarity=0.129  Sum_probs=42.4

Q ss_pred             CCcEEEEcCCCCCCCHHHHHHHhcc-CCce---EEEEEeeccCCCCCCccccEEEEEecchhhHHHHH-hccCCccccce
Q psy14559         10 KTKVVQVANIAPQATRDQMQTLFGY-LGKV---EDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQ-HLTNTVFIDRA   84 (405)
Q Consensus        10 ~~~tLfVgNLp~~vTeedLr~lFs~-~G~I---~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al-~~~n~~~~~~~   84 (405)
                      ....|.|++||++.||+++.+..+. +|.-   ..+.-..... ......-.-|||.|.+.+++..=. ..++..|.|..
T Consensus         6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~-~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k   84 (176)
T PF03467_consen    6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKK-SFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK   84 (176)
T ss_dssp             ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-S-SSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred             cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCc-cCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence            3458999999999999999998887 7765   2332111111 111112345999999999865544 45555666644

Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.

>KOG4285|consensus

Probab=89.64  E-value=0.66  Score=45.03  Aligned_cols=72  Identities=15%  Similarity=0.219  Sum_probs=54.0

Q ss_pred             cEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeE-Eeec
Q psy14559         12 KVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALV-VTPY   90 (405)
Q Consensus        12 ~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~-vv~~   90 (405)
                      .=|-|=+.|+.-+ .-|..+|++||+|.+...         +....+-+|.|.+..+|++||..+++++-+..++ |.++
T Consensus       198 ~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~---------~~ngNwMhirYssr~~A~KALskng~ii~g~vmiGVkpC  267 (350)
T KOG4285|consen  198 TWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVT---------PSNGNWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPC  267 (350)
T ss_pred             ceEEEeccCccch-hHHHHHHHhhCeeeeeec---------CCCCceEEEEecchhHHHHhhhhcCeeeccceEEeeeec
Confidence            3355556666543 457789999999998755         2347799999999999999999988887777666 4555


Q ss_pred             CCC
Q psy14559         91 NSG   93 (405)
Q Consensus        91 ~~~   93 (405)
                      .+.
T Consensus       268 tDk  270 (350)
T KOG4285|consen  268 TDK  270 (350)
T ss_pred             CCH
Confidence            553

>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons

Probab=88.72  E-value=0.51  Score=42.79  Aligned_cols=76  Identities=9%  Similarity=0.127  Sum_probs=47.1

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhc-CCCe---eEEEE-ecc-CC--CCCcEEEEEECCHHHHHHHHH-hCCceeCCe---
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQK-VGTV---NYIRF-CTR-EN--DTNKYALVEFSDQACVIPALK-LNGTNLKGK---  233 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~-~G~I---~~i~i-~~~-~~--~~rg~afV~F~~~e~A~~Al~-lng~~l~g~---  233 (405)
                      ..+|.|++||+++|++++.+.++. +|.-   .++.- ..+ ..  ..-.-|||.|.+.+++..-.. ++|+.|.+.   
T Consensus         7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~   86 (176)
T PF03467_consen    7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGN   86 (176)
T ss_dssp             --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-
T ss_pred             CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCCC
Confidence            568999999999999999887776 6655   33331 111 11  123459999999999877777 999877543   


Q ss_pred             --eEEEeecc
Q psy14559        234 --TLQMFHST  241 (405)
Q Consensus       234 --~i~V~~a~  241 (405)
                        +-.|++|-
T Consensus        87 ~~~~~VE~Ap   96 (176)
T PF03467_consen   87 EYPAVVEFAP   96 (176)
T ss_dssp             EEEEEEEE-S
T ss_pred             CcceeEEEcc
Confidence              33556654

Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.

>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN)

Probab=88.41  E-value=1.8  Score=34.26  Aligned_cols=53  Identities=11%  Similarity=0.309  Sum_probs=39.2

Q ss_pred             cEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hC
Q psy14559        167 RTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LN  226 (405)
Q Consensus       167 rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-ln  226 (405)
                      .-.||+ +|.+-...||.++|+.||.| .|..+.|+     .|||...+.+.|..|+. ++
T Consensus        10 HVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~dT-----SAfV~l~~r~~~~~v~~~~~   63 (87)
T PF08675_consen   10 HVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWINDT-----SAFVALHNRDQAKVVMNTLK   63 (87)
T ss_dssp             CEEEEE---TT--HHHHHHHCCCCCCE-EEEEECTT-----EEEEEECCCHHHHHHHHHHT
T ss_pred             eEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcCC-----cEEEEeecHHHHHHHHHHhc
Confidence            345555 99999999999999999987 45555543     69999999999999987 53

; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.

>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function

Probab=87.91  E-value=2.1  Score=37.54  Aligned_cols=73  Identities=18%  Similarity=0.163  Sum_probs=50.5

Q ss_pred             CCCCcEEEEcCCC-----CCCCHH----HHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCC
Q psy14559          8 PVKTKVVQVANIA-----PQATRD----QMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNT   78 (405)
Q Consensus         8 ~~~~~tLfVgNLp-----~~vTee----dLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~   78 (405)
                      .++..||.|.=+.     ...-.+    +|-+.|+.||++.=+++.           .+.-+|.|.+.++|-+|+.+++.
T Consensus        24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv-----------~~~mwVTF~dg~sALaals~dg~   92 (146)
T PF08952_consen   24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFV-----------GDTMWVTFRDGQSALAALSLDGI   92 (146)
T ss_dssp             --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEE-----------TTCEEEEESSCHHHHHHHHGCCS
T ss_pred             CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEe-----------CCeEEEEECccHHHHHHHccCCc
Confidence            3456677776555     223344    566789999998888882           23489999999999999999999


Q ss_pred             ccccceeEEeecC
Q psy14559         79 VFIDRALVVTPYN   91 (405)
Q Consensus        79 ~~~~~~~~vv~~~   91 (405)
                      ...++.+.+....
T Consensus        93 ~v~g~~l~i~LKt  105 (146)
T PF08952_consen   93 QVNGRTLKIRLKT  105 (146)
T ss_dssp             EETTEEEEEEE--
T ss_pred             EECCEEEEEEeCC
Confidence            9888888776543

; PDB: 1UFW_A 2DNR_A.

>PF15023 DUF4523: Protein of unknown function (DUF4523)

Probab=87.20  E-value=1.8  Score=37.71  Aligned_cols=61  Identities=10%  Similarity=0.139  Sum_probs=44.1

Q ss_pred             CCCCcEEEEcCCCCCC-CHHHHHH---HhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCC
Q psy14559          8 PVKTKVVQVANIAPQA-TRDQMQT---LFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNT   78 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~v-TeedLr~---lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~   78 (405)
                      .++-.||.|+=|..++ ..+|++.   ..+.||+|.+|.+.        |  +.-|.|.|.+..+|-.|+.....
T Consensus        83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c--------G--rqsavVvF~d~~SAC~Av~Af~s  147 (166)
T PF15023_consen   83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC--------G--RQSAVVVFKDITSACKAVSAFQS  147 (166)
T ss_pred             CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec--------C--CceEEEEehhhHHHHHHHHhhcC
Confidence            3456788887666654 3344554   56789999999882        2  44599999999999999865543

>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function

Probab=87.11  E-value=2.8  Score=31.30  Aligned_cols=52  Identities=21%  Similarity=0.370  Sum_probs=41.2

Q ss_pred             cEEEEcCCCCCCCHHHHHHHhccC----CceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhc
Q psy14559         12 KVVQVANIAPQATRDQMQTLFGYL----GKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHL   75 (405)
Q Consensus        12 ~tLfVgNLp~~vTeedLr~lFs~~----G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~   75 (405)
                      ..|+|.++. +++.++|+.+|..|    ++ ..|.++   .|.+       |=|.|.+.+.|..||..
T Consensus         6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~-~~IEWI---dDtS-------cNvvf~d~~~A~~AL~~   61 (62)
T PF10309_consen    6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGP-FRIEWI---DDTS-------CNVVFKDEETAARALVA   61 (62)
T ss_pred             ceEEEEcCC-CCCHHHHHHHHHHhcccCCC-ceEEEe---cCCc-------EEEEECCHHHHHHHHHc
Confidence            478999995 58889999999998    54 567773   2334       88999999999999853

>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells

Probab=87.10  E-value=2  Score=39.24  Aligned_cols=59  Identities=20%  Similarity=0.282  Sum_probs=43.3

Q ss_pred             CHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hC--CceeCCeeEEEeecc
Q psy14559        179 SPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LN--GTNLKGKTLQMFHST  241 (405)
Q Consensus       179 tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-ln--g~~l~g~~i~V~~a~  241 (405)
                      ..+.|+++|..++.+..+....    +-+-..|.|.+.++|..|.. |+  +..+.|..+++.++.
T Consensus         8 ~~~~l~~l~~~~~~~~~~~~L~----sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~   69 (184)
T PF04847_consen    8 NLAELEELFSTYDPPVQFSPLK----SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQ   69 (184)
T ss_dssp             -HHHHHHHHHTT-SS-EEEEET----TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE---
T ss_pred             hHHHHHHHHHhcCCceEEEEcC----CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcc
Confidence            3478999999999887776532    33458999999999999998 88  999999999999885

Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.

>KOG2416|consensus

Probab=87.08  E-value=0.51  Score=49.61  Aligned_cols=73  Identities=14%  Similarity=0.131  Sum_probs=58.1

Q ss_pred             cCcEEEEeCCCCCCCHHHHHHHHh-cCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCcee---CCeeEEEee
Q psy14559        165 IRRTLVAINIEESVSPQELVDFFQ-KVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNL---KGKTLQMFH  239 (405)
Q Consensus       165 ~~rtvfV~NLp~~~tee~L~~~F~-~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l---~g~~i~V~~  239 (405)
                      ..+.|||.||=--.|.-+|+.+++ .||.|.+. ++   .+-+.-|||.|.+.++|.+-.. |+|..+   +++.|.+.|
T Consensus       443 ~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-Wm---DkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf  518 (718)
T KOG2416|consen  443 PSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WM---DKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADF  518 (718)
T ss_pred             ccceEeeecccccchHHHHHHHHhhccCchHHH-HH---HHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeee
Confidence            356899999999999999999999 56677666 33   2345679999999999988887 999766   466777776


Q ss_pred             cc
Q psy14559        240 ST  241 (405)
Q Consensus       240 a~  241 (405)
                      ..
T Consensus       519 ~~  520 (718)
T KOG2416|consen  519 VR  520 (718)
T ss_pred             cc
Confidence            63

>KOG2591|consensus

Probab=86.98  E-value=1  Score=47.10  Aligned_cols=66  Identities=20%  Similarity=0.305  Sum_probs=53.7

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHh--cCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCC--ceeCCeeEE
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQ--KVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNG--TNLKGKTLQ  236 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~--~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng--~~l~g~~i~  236 (405)
                      ++.|.+.-||..+-.|+++.+|.  .|-++.+|.+....+     =||+|++..+|+.|.+ |..  ..|.|++|.
T Consensus       175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-----WyITfesd~DAQqAykylreevk~fqgKpIm  245 (684)
T KOG2591|consen  175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-----WYITFESDTDAQQAYKYLREEVKTFQGKPIM  245 (684)
T ss_pred             eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-----eEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence            45678899999999999999998  588999999843322     5999999999999987 544  577787764

>KOG2135|consensus

Probab=86.60  E-value=0.46  Score=48.65  Aligned_cols=73  Identities=18%  Similarity=0.256  Sum_probs=59.0

Q ss_pred             CcEEEEeCCCCCCC-HHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeeccC
Q psy14559        166 RRTLVAINIEESVS-PQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       166 ~rtvfV~NLp~~~t-ee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~~  242 (405)
                      .+.+-+.-.|+..+ -.+|...|.+||+|..|.+    +.+.--|.|+|.+..+|-.|-...+..|++|.|+|.+-+.
T Consensus       372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv----~~~~~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnp  445 (526)
T KOG2135|consen  372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQV----DYSSLHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNP  445 (526)
T ss_pred             cchhhhhccCCCCchHhhhhhhhhhcCccccccc----cCchhhheeeeeccccccchhccccceecCceeEEEEecC
Confidence            34555556666654 4789999999999999988    2234469999999999988888999999999999988764

>PF15023 DUF4523: Protein of unknown function (DUF4523)

Probab=85.91  E-value=3.1  Score=36.29  Aligned_cols=68  Identities=16%  Similarity=0.313  Sum_probs=48.1

Q ss_pred             CcEEEEeCCCCCC----CHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEee
Q psy14559        166 RRTLVAINIEESV----SPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFH  239 (405)
Q Consensus       166 ~rtvfV~NLp~~~----tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~  239 (405)
                      -.||.|.=|..++    +-..+....+.||+|.++.++.     +..|.|.|.+..+|-+|+. +. ...-|..+...+
T Consensus        86 MsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-----rqsavVvF~d~~SAC~Av~Af~-s~~pgtm~qCsW  158 (166)
T PF15023_consen   86 MSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-----RQSAVVVFKDITSACKAVSAFQ-SRAPGTMFQCSW  158 (166)
T ss_pred             ceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-----CceEEEEehhhHHHHHHHHhhc-CCCCCceEEeec
Confidence            3478787554444    3345666778999999998842     4579999999999999998 44 345566555443

>KOG0804|consensus

Probab=85.87  E-value=2.5  Score=43.27  Aligned_cols=68  Identities=18%  Similarity=0.296  Sum_probs=59.4

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcC-CCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCe
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKV-GTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGK  233 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~-G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~  233 (405)
                      ...|+|--+|..+|--||..|...+ -.|.++++++|.-.++-...|.|.+.++|..-.. +||..|..-
T Consensus        74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~l  143 (493)
T KOG0804|consen   74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNSL  143 (493)
T ss_pred             CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCCC
Confidence            6789999999999999999999865 5899999998755667789999999999999988 999888653

>KOG2591|consensus

Probab=80.36  E-value=3.6  Score=43.20  Aligned_cols=57  Identities=16%  Similarity=0.148  Sum_probs=47.2

Q ss_pred             CCcEEEEcCCCCCCCHHHHHHHhcc--CCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhcc
Q psy14559         10 KTKVVQVANIAPQATRDQMQTLFGY--LGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLT   76 (405)
Q Consensus        10 ~~~tLfVgNLp~~vTeedLr~lFs~--~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~   76 (405)
                      +-|.|.++-||.++..|+++.||+.  |-++.+|.+-..+         + =||.|++..||+.|.+..
T Consensus       174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~---------n-WyITfesd~DAQqAykyl  232 (684)
T KOG2591|consen  174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND---------N-WYITFESDTDAQQAYKYL  232 (684)
T ss_pred             ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC---------c-eEEEeecchhHHHHHHHH
Confidence            4477888999999999999999975  8899999883322         1 699999999999996544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	405
2jwn_A	124	Solution Nmr Structure Of The Protease-Resistent Do		8e-04

>pdb|2JWN|A Chain A, Solution Nmr Structure Of The Protease-Resistent Domain Of Xenopus Laevis Epabp2 Length = 124

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 51/90 (56%), Gaps = 3/90 (3%)
Query: 151 PPLPITYDTKKIEEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIR-FCTRENDTNK-Y 208
           PP P++ + KK E  +R++   N++   + Q+L   F   G++N I   C + +   K Y
Sbjct: 22  PPQPLSAEEKK-EIDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGY 80
Query: 209 ALVEFSDQACVIPALKLNGTNLKGKTLQMF 238
           A +EF+++  V  A+ ++ T  +G+T+++ 
Sbjct: 81  AYIEFAERNSVDAAVAMDETVFRGRTIKVL 110

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	405
1fje_B	175	Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin	1e-10
1fje_B	175	Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin	1e-04
2cq4_A	114	RNA binding motif protein 23; RRM domain, structur	3e-10
1s79_A	103	Lupus LA protein; RRM, alpha/beta, RNA binding pro	8e-10
2cqi_A	103	Nucleolysin TIAR; RNA recognition motif, RRM, RNA	3e-09
2jwn_A	124	Embryonic polyadenylate-binding protein 2-B; epabp	3e-09
2cpy_A	114	RNA-binding protein 12; RRM domain, structural gen	1e-08
3ucg_A	89	Polyadenylate-binding protein 2; ferredoxin-like,	1e-08
1qm9_A	198	Polypyrimidine tract-binding protein; ribonucleopr	2e-08
1qm9_A	198	Polypyrimidine tract-binding protein; ribonucleopr	2e-06
2adc_A	229	Polypyrimidine tract-binding protein 1; RBD, RRM,	2e-08
2adc_A	229	Polypyrimidine tract-binding protein 1; RBD, RRM,	4e-06
2e5g_A	94	U6 snRNA-specific terminal uridylyltransferase 1;	3e-08
1fj7_A	101	Nucleolin RBD1, protein C23; RNP, RRM, RNA binding	3e-08
3tyt_A	205	Heterogeneous nuclear ribonucleoprotein L; ferredo	6e-08
2hgn_A	139	Heterogeneous nuclear ribonucleoprotein F; RNA rec	9e-08
2yh0_A	198	Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli	1e-07
2yh0_A	198	Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli	3e-05
2ek1_A	95	RNA-binding protein 12; RNA recognition motif, dim	1e-07
2hgm_A	126	HNRPF protein, heterogeneous nuclear ribonucleopro	2e-07
1wg5_A	104	Heterogeneous nuclear ribonucleoprotein H; structu	2e-07
3lqv_A	115	PRE-mRNA branch site protein P14; cysless mutant,	2e-07
3lqv_A	115	PRE-mRNA branch site protein P14; cysless mutant,	2e-04
1fxl_A	167	Paraneoplastic encephalomyelitis antigen HUD; prot	6e-07
2g4b_A	172	Splicing factor U2AF 65 kDa subunit; protein-RNA c	7e-07
1wi8_A	104	EIF-4B, eukaryotic translation initiation factor 4	7e-07
1x5u_A	105	Splicing factor 3B subunit 4 (spliceosome associat	8e-07
1wel_A	124	RNA-binding protein 12; structural genomics, NPPSF	8e-07
2cqp_A	98	RNA-binding protein 12; RNA recognition motif, RRM	9e-07
2db1_A	118	Heterogeneous nuclear ribonucleoprotein F; RRM dom	1e-06
2dha_A	123	FLJ20171 protein; RRM domain, structural genomics,	1e-06
2dha_A	123	FLJ20171 protein; RRM domain, structural genomics,	4e-04
2dnn_A	109	RNA-binding protein 12; RRM domain, RBD, structura	2e-06
1x4c_A	108	Splicing factor, arginine/serine-rich 1; structura	2e-06
1x4g_A	109	Nucleolysin TIAR; structural genomics, RRM domain,	2e-06
1wez_A	102	HnRNP H', FTP-3, heterogeneous nuclear ribonucleop	2e-06
2j76_E	100	EIF-4B, EIF4B, eukaryotic translation initiation f	2e-06
2lmi_A	107	GRSF-1, G-rich sequence factor 1; G-rich RNA seque	3e-06
2hgl_A	136	HNRPF protein, heterogeneous nuclear ribonucleopro	3e-06
2dgw_A	91	Probable RNA-binding protein 19; RRM domain, struc	4e-06
2ywk_A	95	Putative RNA-binding protein 11; RRM-domain, struc	4e-06
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	4e-06
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	8e-06
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	5e-04
3s8s_A	110	Histone-lysine N-methyltransferase SETD1A; chromat	6e-06
2hzc_A	87	Splicing factor U2AF 65 kDa subunit; RNA splicing,	6e-06
1b7f_A	168	Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP	8e-06
2la4_A	101	Nuclear and cytoplasmic polyadenylated RNA-bindin	9e-06
2voo_A	193	Lupus LA protein; RNA-binding protein, RNA recogni	9e-06
3md3_A	166	Nuclear and cytoplasmic polyadenylated RNA-bindin	9e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
2e5j_A	97	Methenyltetrahydrofolate synthetase domain contain	1e-05
2qfj_A	216	FBP-interacting repressor; protein-DNA complex; HE	1e-05
1oo0_B	110	CG8781-PA, drosophila Y14; RNA recognition motif,	1e-05
2cqh_A	93	IGF-II mRNA-binding protein 2 isoform A; RNA recog	2e-05
1rk8_A	165	CG8781-PA, CG8781-PA protein; mRNA processing, RRM	2e-05
2ad9_A	119	Polypyrimidine tract-binding protein 1; RBD, RRM,	2e-05
2la6_A	99	RNA-binding protein FUS; structural genomics, nort	2e-05
2e44_A	96	Insulin-like growth factor 2 mRNA binding protein	2e-05
2cpj_A	99	Non-POU domain-containing octamer-binding protein;	2e-05
2cpe_A	113	RNA-binding protein EWS; RNA recognition motif, RR	2e-05
1whx_A	111	Hypothetical protein riken cDNA 1200009A02; RNA re	3e-05
1wex_A	104	Hypothetical protein (riken cDNA 2810036L13); stru	3e-05
2dgv_A	92	HnRNP M, heterogeneous nuclear ribonucleoprotein M	3e-05
2x1f_A	96	MRNA 3'-END-processing protein RNA15; transcriptio	3e-05
1sjq_A	105	Polypyrimidine tract-binding protein 1; babbab mot	3e-05
2jvr_A	111	Nucleolar protein 3; RNA recognition motif, nucleu	3e-05
4f02_A	213	Polyadenylate-binding protein 1; mRNA, eukaryotic	4e-05
2cpx_A	115	Hypothetical protein FLJ11016; RRM domain, structu	4e-05
1p27_B	106	RNA-binding protein 8A; nuclear protein, mRNA spli	4e-05
3beg_B	115	Splicing factor, arginine/serine-rich 1; kinase, S	4e-05
1why_A	97	Hypothetical protein riken cDNA 1810017N16; RNA re	4e-05
1h2v_Z	156	20 kDa nuclear CAP binding protein; CAP-binding-co	5e-05
2dng_A	103	Eukaryotic translation initiation factor 4H; RRM d	5e-05
1wg1_A	88	KIAA1579 protein, homolog EXC-7; RBD, structural g	6e-05
2dnq_A	90	RNA-binding protein 4B; RRM domain,RBD, structural	7e-05
2cq1_A	101	PTB-like protein L; RRM domain, structural genomic	7e-05
2e5h_A	94	Zinc finger CCHC-type and RNA-binding motif- conta	9e-05
2lcw_A	116	RNA-binding protein FUS; RRM, nucleic acid binding	1e-04
2fc9_A	101	NCL protein; structure genomics, RRM_1 domain, str	1e-04
2ytc_A	85	PRE-mRNA-splicing factor RBM22; RRM domain, RBD, s	1e-04
1fjc_A	96	Nucleolin RBD2, protein C23; RNP, RRM, RNA binding	1e-04
3ex7_B	126	RNA-binding protein 8A; protein-RNA complex, mRNA	2e-04
1p1t_A	104	Cleavage stimulation factor, 64 kDa subunit; RNA r	2e-04
2kt5_A	124	RNA and export factor-binding protein 2; chaperone	2e-04
2do4_A	100	Squamous cell carcinoma antigen recognized by T- c	2e-04
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	2e-04
2jrs_A	108	RNA-binding protein 39; RNA binding motif of RBM39	3e-04
4a8x_A	88	RNA-binding protein with serine-rich domain 1; tra	3e-04
1l3k_A	196	Heterogeneous nuclear ribonucleoprotein A1; nuclea	3e-04
2dnz_A	95	Probable RNA-binding protein 23; RNA recognition m	4e-04
3sde_A	261	Paraspeckle component 1; RRM, anti parallel right	4e-04
2jvo_A	108	Nucleolar protein 3; nucleus, phosphorylation, rib	4e-04
1x4a_A	109	Splicing factor, arginine/serine-rich 1 (splicing	4e-04
1x4h_A	111	RNA-binding protein 28; structural genomics, RRM d	5e-04
2dgt_A	92	RNA-binding protein 30; RRM domain, structural gen	5e-04
3ulh_A	107	THO complex subunit 4; nuclear protein, RNA bindin	6e-04
3mdf_A	85	Peptidyl-prolyl CIS-trans isomerase E; RRM domain,	6e-04
3r27_A	100	HnRNP L, heterogeneous nuclear ribonucleoprotein L	7e-04
2f3j_A	177	RNA and export factor binding protein 2; RRM domai	8e-04
2dnp_A	90	RNA-binding protein 14; RRM domain, RBD, structura	9e-04

>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A Length = 175

 Score = 58.8 bits (143), Expect = 1e-10
 Identities = 16/85 (18%), Positives = 36/85 (42%), Gaps = 8/85 (9%)

Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNK-YALVEFSDQACVIPALKLNGTNLK 231
           N+  + S  EL     ++   N +        TN+ +  V+F     +  AL+L G  + 
Sbjct: 20  NLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVF 79

Query: 232 GKTLQMFHSTQSIQKPEAKSNEAAQ 256
           G  ++       ++KP+ + ++  +
Sbjct: 80  GNEIK-------LEKPKGRDSKKVR 97

>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A Length = 175

 Score = 41.4 bits (98), Expect = 1e-04
 Identities = 12/67 (17%), Positives = 27/67 (40%), Gaps = 10/67 (14%)

Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNK---YALVEFSDQACVIPAL-KLNGT 228
           N+  +++  EL + F+    +  +          K    A +EF  +A     L +  G 
Sbjct: 106 NLSFNITEDELKEVFEDALEIRLVS------QDGKSKGIAYIEFKSEADAEKNLEEKQGA 159

Query: 229 NLKGKTL 235
            + G+++
Sbjct: 160 EIDGRSV 166

>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 114

 Score = 56.6 bits (137), Expect = 3e-10
 Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 4/81 (4%)

Query: 158 DTKKIEEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNK---YALVEFS 214
           +    E   RT+  + +   + P++L DFF  VG V  +R  + + ++ +    A VEF 
Sbjct: 17  NLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIIS-DRNSRRSKGIAYVEFC 75

Query: 215 DQACVIPALKLNGTNLKGKTL 235
           +   V  A+ L G  L G  +
Sbjct: 76  EIQSVPLAIGLTGQRLLGVPI 96

>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 103

 Score = 54.7 bits (132), Expect = 8e-10
 Identities = 15/101 (14%), Positives = 32/101 (31%), Gaps = 4/101 (3%)

Query: 161 KIEEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNK-YALVEFSDQACV 219
           K +   R++         +  ++ ++ +  G V  I+     +   K    V F      
Sbjct: 6   KNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESA 65

Query: 220 IPALKLNGTNLKGKTLQMFHSTQSIQKPEAKSNEAAQREIE 260
              ++  G   K   L +            K+ E  Q ++E
Sbjct: 66  KKFVETPGQKYKETDLLI---LFKDDYFAKKNEERKQNKVE 103

>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 103

 Score = 53.0 bits (128), Expect = 3e-09
 Identities = 18/82 (21%), Positives = 36/82 (43%), Gaps = 3/82 (3%)

Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNK-YALVEFSDQACVIPALK-LNGTNL 230
           N+   V+   ++  F ++G     +    E+ +N  Y  VEF +      AL  +NG  +
Sbjct: 22  NLSRDVTEVLILQLFSQIGPCKSCKMI-TEHTSNDPYCFVEFYEHRDAAAALAAMNGRKI 80

Query: 231 KGKTLQMFHSTQSIQKPEAKSN 252
            GK +++  +T    +    S+
Sbjct: 81  LGKEVKVNWATTPSSQKSGPSS 102

>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis} Length = 124

 Score = 53.6 bits (129), Expect = 3e-09
 Identities = 23/92 (25%), Positives = 46/92 (50%), Gaps = 7/92 (7%)

Query: 148 PQYPPLPITYDTKKIEEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCT-RENDTN 206
            + PP P++ + KK  + R   V  N++   + Q+L   F   G++N I     +   + 
Sbjct: 19  TEGPPQPLSAEEKKEIDKRSVYVG-NVDYGSTAQDLEAHFSSCGSINRITILCDKF--SG 75

Query: 207 K---YALVEFSDQACVIPALKLNGTNLKGKTL 235
               YA +EF+++  V  A+ ++ T  +G+T+
Sbjct: 76  HPKGYAYIEFAERNSVDAAVAMDETVFRGRTI 107

>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 114

 Score = 52.0 bits (125), Expect = 1e-08
 Identities = 16/87 (18%), Positives = 35/87 (40%), Gaps = 2/87 (2%)

Query: 173 NIEESVSPQELVDFFQKVGTV-NYIRFCTRENDTNK-YALVEFSDQACVIPALKLNGTNL 230
           NI  S++  +++ F + +    N +      N      ALV+F ++     + +L+   L
Sbjct: 22  NIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKL 81

Query: 231 KGKTLQMFHSTQSIQKPEAKSNEAAQR 257
            G+   +   T    +   K+  A  +
Sbjct: 82  NGREAFVHVVTLEDMREIEKNPPAQGK 108

>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A Length = 89

 Score = 51.0 bits (123), Expect = 1e-08
 Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 6/67 (8%)

Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCT-RENDTNK---YALVEFSDQACVIPALKLNGT 228
           N++   + +EL   F   G+VN +     +   +     +A +EFSD+  V  +L L+ +
Sbjct: 13  NVDYGATAEELEAHFHGCGSVNRVTILCDKF--SGHPKGFAYIEFSDKESVRTSLALDES 70

Query: 229 NLKGKTL 235
             +G+ +
Sbjct: 71  LFRGRQI 77

>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 Length = 198

 Score = 53.4 bits (128), Expect = 2e-08
 Identities = 41/243 (16%), Positives = 78/243 (32%), Gaps = 52/243 (21%)

Query: 9   VKTKVVQVANIAPQA-TRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFD-- 65
           +   V+ V+N+ P+  T   +  LFG  G V+ +++    ++           V+  D  
Sbjct: 1   MGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKE--------NALVQMADGN 52

Query: 66  --EKCVGISQHLTNTVFIDRALVVTPYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVT 123
             +  +    HL       + + +T      +   +   E     +   +     P H  
Sbjct: 53  QAQLAM---SHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNS----PLHRF 105

Query: 124 NQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRTLVAINIEESVSPQEL 183
            +        +               +PP               TL   NI  SVS ++L
Sbjct: 106 KKPGSKNFQNI---------------FPP-------------SATLHLSNIPPSVSEEDL 137

Query: 184 VDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPAL-KLNGTNLK-GKTLQMFHST 241
              F   G V  ++         K AL++       + AL  L+  +L     L++  S 
Sbjct: 138 KVLFSSNGGV--VKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 195

Query: 242 QSI 244
            +I
Sbjct: 196 STI 198

>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 Length = 198

 Score = 46.8 bits (111), Expect = 2e-06
 Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 4/92 (4%)

Query: 175 EESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGK 233
            E V+PQ L   F   G V  ++      +  + ALV+ +D      A+  LNG  L GK
Sbjct: 13  PERVTPQSLFILFGVYGDVQRVKILF---NKKENALVQMADGNQAQLAMSHLNGHKLHGK 69

Query: 234 TLQMFHSTQSIQKPEAKSNEAAQREIEEAMSR 265
            +++  S     +   +  E      +   S 
Sbjct: 70  PIRITLSKHQNVQLPREGQEDQGLTKDYGNSP 101

>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A Length = 229

 Score = 53.5 bits (128), Expect = 2e-08
 Identities = 43/248 (17%), Positives = 79/248 (31%), Gaps = 46/248 (18%)

Query: 1   MAVDTVAPVKTKVVQVANIAPQA-TRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRIC 59
           +A+  +A     V+ V+N+ P+  T   +  LFG  G V+ +++    ++          
Sbjct: 24  IAIPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKEN--------A 75

Query: 60  YVKFFDEKCVGIS-QHLTNTVFIDRALVVTPYNSGEIPDEQRALEIAAQQQGPNSGEPKL 118
            V+  D     ++  HL       + + +T                 ++ Q         
Sbjct: 76  LVQMADGNQAQLAMSHLNGHKLHGKPIRITL----------------SKHQNVQLPREGQ 119

Query: 119 PAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRTLVAINIEESV 178
                 +  G  P            Q+  P                   TL   NI  SV
Sbjct: 120 EDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSA----------------TLHLSNIPPSV 163

Query: 179 SPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPAL-KLNGTNLK-GKTLQ 236
           S ++L   F   G V  ++         K AL++       + AL  L+  +L     L+
Sbjct: 164 SEEDLKVLFSSNGGV--VKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLR 221

Query: 237 MFHSTQSI 244
           +  S  +I
Sbjct: 222 VSFSKSTI 229

>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A Length = 229

 Score = 46.5 bits (110), Expect = 4e-06
 Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 4/92 (4%)

Query: 175 EESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGK 233
            E V+PQ L   F   G V  ++    + +    ALV+ +D      A+  LNG  L GK
Sbjct: 44  PERVTPQSLFILFGVYGDVQRVKILFNKKE---NALVQMADGNQAQLAMSHLNGHKLHGK 100

Query: 234 TLQMFHSTQSIQKPEAKSNEAAQREIEEAMSR 265
            +++  S     +   +  E      +   S 
Sbjct: 101 PIRITLSKHQNVQLPREGQEDQGLTKDYGNSP 132

>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 94

 Score = 50.4 bits (121), Expect = 3e-08
 Identities = 14/63 (22%), Positives = 22/63 (34%), Gaps = 3/63 (4%)

Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALKLNGTNLKG 232
                V   +L ++F   G V  +       D   +A+VE  D       L  +  +L G
Sbjct: 15  GFPRGVDSAQLSEYFLAFGPVASVVMDK---DKGVFAIVEMGDVGAREAVLSQSQHSLGG 71

Query: 233 KTL 235
             L
Sbjct: 72  HRL 74

>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1 Length = 101

 Score = 50.3 bits (121), Expect = 3e-08
 Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 1/64 (1%)

Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNK-YALVEFSDQACVIPALKLNGTNLK 231
           N+  + S  EL     ++   N +        TN+ +  V+F     +  AL+L G  + 
Sbjct: 24  NLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVF 83

Query: 232 GKTL 235
           G  +
Sbjct: 84  GNEI 87

>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A Length = 205

 Score = 51.6 bits (123), Expect = 6e-08
 Identities = 26/235 (11%), Positives = 67/235 (28%), Gaps = 49/235 (20%)

Query: 10  KTKVVQVANIAPQA-TRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFD--- 65
            + V+ V  +       D++  +F   G VE ++                  V+  D   
Sbjct: 3   DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPG--------AAMVEMADGYA 54

Query: 66  -EKCVGISQHLTNTVFIDRALVVTPYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTN 124
            ++ +    HL N     + + V                  ++Q     G+       + 
Sbjct: 55  VDRAI---THLNNNFMFGQKMNVCV----------------SKQPAIMPGQSYGLEDGSC 95

Query: 125 QIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRTLVAINIEESVSPQELV 184
             +    ++      P           P  + +               N    V+ +   
Sbjct: 96  SYKDFSESRNNRFSTPEQ-AAKNRIQHPSNVLH-------------FFNAPLEVTEENFF 141

Query: 185 DFFQKVGTVNY--IRFCTRENDTNKYALVEFSDQACVIPAL-KLNGTNLKGKTLQ 236
           +   ++G      ++  + +++ +   L+E+  ++  +  L  LN   +K     
Sbjct: 142 EICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGP 196

>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A Length = 139

 Score = 49.8 bits (119), Expect = 9e-08
 Identities = 15/129 (11%), Positives = 44/129 (34%), Gaps = 2/129 (1%)

Query: 130 PPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRTLVAINIEESVSPQELVDFFQK 189
             + ++     +    G  Q        +          +    +    +  ++ +FF  
Sbjct: 10  HSSGLVPRGSHMASMTGGQQMGRGSGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSP 69

Query: 190 VGTVNYIRFCTRENDTNK-YALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQSIQKPE 248
           +  V  +      +      A VEF+     + A+  +  N++ + +++F ++ +     
Sbjct: 70  LNPVR-VHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTTGASNG 128

Query: 249 AKSNEAAQR 257
           A S++  Q 
Sbjct: 129 AYSSQVMQG 137

>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A Length = 198

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 18/99 (18%), Positives = 36/99 (36%), Gaps = 14/99 (14%)

Query: 167 RTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRE----NDTNK---YALVEFSDQACV 219
           R L   NI   ++ + ++DFF     +  +             N+   +A +EF      
Sbjct: 5   RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDET 64

Query: 220 IPALKLNGTNLKGKTLQMFHSTQSIQKPEAKSNEAAQRE 258
             A+  +G   +G++L+       I++P          E
Sbjct: 65  TQAMAFDGIIFQGQSLK-------IRRPHDYQPLPGMSE 96

>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A Length = 198

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 33/226 (14%), Positives = 63/226 (27%), Gaps = 54/226 (23%)

Query: 16  VANIAPQATRDQMQTLFGYLGKVEDLRLYP--IARDVSIPVQSRICYVKFFDEKCVGISQ 73
           V NI    T + M   F    ++  L   P      V I       +++F        + 
Sbjct: 9   VGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM 68

Query: 74  HLTNTVFIDRALVVTPYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQ 133
                +F  ++L +           +R          P  G  + P+     + GV    
Sbjct: 69  AFDGIIFQGQSLKI-----------RR-----PHDYQPLPGMSENPS---VYVPGVVSTV 109

Query: 134 VISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRTLVAINIEESVSPQELVDFFQKVGTV 193
           V  +   + +                              +   ++  ++ +     G +
Sbjct: 110 VPDSAHKLFIG----------------------------GLPNYLNDDQVKELLTSFGPL 141

Query: 194 NYIRFCTRENDTNK---YALVEFSDQACVIPAL-KLNGTNLKGKTL 235
                  +++ T     YA  E+ D      A+  LNG  L  K L
Sbjct: 142 KAFNL-VKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKL 186

>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A Length = 95

 Score = 48.5 bits (116), Expect = 1e-07
 Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 3/68 (4%)

Query: 177 SVSPQELVDFFQKVGTV-NYIRFCTRENDTNK-YALVEFSDQACVIPAL-KLNGTNLKGK 233
           +VS  E++DFF     +   +     E       A+V F  +     A+  LN   +  +
Sbjct: 26  TVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSR 85

Query: 234 TLQMFHST 241
            +++   +
Sbjct: 86  KVKLSGPS 93

>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A Length = 126

 Score = 48.3 bits (115), Expect = 2e-07
 Identities = 15/79 (18%), Positives = 30/79 (37%), Gaps = 2/79 (2%)

Query: 167 RTLVAINIEESVSPQELVDFFQKVGTVNY-IRFCTRENDTNK-YALVEFSDQACVIPALK 224
             +    +    + +E+V FF  +  V   I             A V+F+ Q     AL 
Sbjct: 43  GFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG 102

Query: 225 LNGTNLKGKTLQMFHSTQS 243
            +   +  + +++F S+Q 
Sbjct: 103 KHKERIGHRYIEVFKSSQE 121

>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 104

 Score = 47.8 bits (114), Expect = 2e-07
 Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 2/78 (2%)

Query: 177 SVSPQELVDFFQKVGTV-NYIRFCTRENDTNK-YALVEFSDQACVIPALKLNGTNLKGKT 234
             S +E+V FF  +  V N +         +   A V+F+ Q     ALK +   +  + 
Sbjct: 26  GCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY 85

Query: 235 LQMFHSTQSIQKPEAKSN 252
           +++F S+++  +    S+
Sbjct: 86  IEIFKSSRAEVRTSGPSS 103

>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_A 2f9j_A 2fho_B Length = 115

 Score = 48.1 bits (115), Expect = 2e-07
 Identities = 24/109 (22%), Positives = 44/109 (40%), Gaps = 7/109 (6%)

Query: 164 EIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPAL 223
           E+ R L   N+   ++ +E+ D F K G +  IR      +T   A V + D      A+
Sbjct: 6   EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRV-GNTPETRGTAYVVYEDIFDAKNAV 64

Query: 224 K-LNGTNLKGKTLQMFHSTQSIQKPEAKSNEAAQREIEEAMSRVKEAQN 271
             L+G N+  + L + +             +   ++ EE +  +KE   
Sbjct: 65  DHLSGFNVSNRYLVVLYY-----NANRAFQKMDTKKKEEQLKLLKEKYG 108

>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_A 2f9j_A 2fho_B Length = 115

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 27/123 (21%), Positives = 54/123 (43%), Gaps = 21/123 (17%)

Query: 6   VAPVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSR-ICYVKFF 64
           + P   +++ + N+  + T ++M  +FG  G +  +R       V    ++R   YV + 
Sbjct: 3   LPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIR-------VGNTPETRGTAYVVYE 55

Query: 65  D----EKCVGISQHLTNTVFIDRALVVTPYNSG------EIPDEQRALEIAAQQQGPNSG 114
           D    +  V    HL+     +R LVV  YN+       +   ++  L++  ++ G N+ 
Sbjct: 56  DIFDAKNAV---DHLSGFNVSNRYLVVLYYNANRAFQKMDTKKKEEQLKLLKEKYGINTD 112

Query: 115 EPK 117
            PK
Sbjct: 113 PPK 115

>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A Length = 167

 Score = 48.3 bits (116), Expect = 6e-07
 Identities = 16/80 (20%), Positives = 35/80 (43%), Gaps = 5/80 (6%)

Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNK---YALVEFSDQACVIPALK-LNGT 228
            + ++++ +E    F  +G +   +   R+  T +   Y  V + D      A+  LNG 
Sbjct: 9   YLPQNMTQEEFRSLFGSIGEIESCKLV-RDKITGQSLGYGFVNYIDPKDAEKAINTLNGL 67

Query: 229 NLKGKTLQMFHSTQSIQKPE 248
            L+ KT+++ ++  S     
Sbjct: 68  RLQTKTIKVSYARPSSASIR 87

>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A Length = 172

 Score = 48.0 bits (115), Expect = 7e-07
 Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 7/76 (9%)

Query: 167 RTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRE----NDTNK---YALVEFSDQACV 219
           R L   NI   ++ + ++DFF     +  +             N+   +A +EF      
Sbjct: 5   RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDET 64

Query: 220 IPALKLNGTNLKGKTL 235
             A+  +G   +G++L
Sbjct: 65  TQAMAFDGIIFQGQSL 80

>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 104

 Score = 46.5 bits (111), Expect = 7e-07
 Identities = 14/66 (21%), Positives = 30/66 (45%), Gaps = 4/66 (6%)

Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNK---YALVEFSDQACVIPALKLNGTN 229
           N+   V+ + + +FF+ +     +R     ++  +   +   EF D   ++ AL LN  +
Sbjct: 22  NLPYDVTEESIKEFFRGLNISA-VRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEES 80

Query: 230 LKGKTL 235
           L  K +
Sbjct: 81  LGNKRI 86

>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 105

 Score = 46.1 bits (110), Expect = 8e-07
 Identities = 19/98 (19%), Positives = 35/98 (35%), Gaps = 19/98 (19%)

Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNK---YALVEFSDQACVIPALK-LNGT 228
            ++E VS   L + F + G V       ++  T +   Y  VEF  +     A+K ++  
Sbjct: 22  GLDEKVSEPLLWELFLQAGPVVNTHMP-KDRVTGQHQGYGFVEFLSEEDADYAIKIMDMI 80

Query: 229 NLKGKTLQMFHSTQSIQKPEAKSNEAAQREIEEAMSRV 266
            L GK +              + N+A+      +    
Sbjct: 81  KLYGKPI--------------RVNKASAHNKNLSGPSS 104

>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 124

 Score = 46.8 bits (111), Expect = 8e-07
 Identities = 15/84 (17%), Positives = 31/84 (36%), Gaps = 2/84 (2%)

Query: 177 SVSPQELVDFFQKVGTV-NYIRFCTRENDTNK-YALVEFSDQACVIPALKLNGTNLKGKT 234
               + ++DFF+K+  V + I      N        VEF ++A    AL  +   +  + 
Sbjct: 36  EAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRF 95

Query: 235 LQMFHSTQSIQKPEAKSNEAAQRE 258
           +Q+   T+     +        + 
Sbjct: 96  IQVHPITKKGMLEKIDMIRKRLQS 119

>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Length = 98

 Score = 45.7 bits (109), Expect = 9e-07
 Identities = 14/76 (18%), Positives = 29/76 (38%), Gaps = 7/76 (9%)

Query: 177 SVSPQELVDFFQKVGTV-NYIRFCTRENDTNK-YALVEFSDQACVIPAL-KLNGTNLKGK 233
           +VS  E++DFF     +   +     E       A+V F  +     A+  LN   +  +
Sbjct: 26  TVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSR 85

Query: 234 TLQMFHSTQSIQKPEA 249
            +++   +     P +
Sbjct: 86  KVKLVLGS----GPSS 97

>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 118

 Score = 46.5 bits (110), Expect = 1e-06
 Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 4/71 (5%)

Query: 177 SVSPQELVDFF---QKVGTVNYIRFCTRENDTNK-YALVEFSDQACVIPALKLNGTNLKG 232
           S S +++ +F         V  + F           A VE   +  V  ALK +  ++  
Sbjct: 28  SCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGH 87

Query: 233 KTLQMFHSTQS 243
           + +++F S ++
Sbjct: 88  RYIEVFKSHRT 98

>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 123

 Score = 46.4 bits (110), Expect = 1e-06
 Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 5/86 (5%)

Query: 177 SVSPQELVDFFQK----VGTVNYIRFCTRENDTNK-YALVEFSDQACVIPALKLNGTNLK 231
           + + +E+V FF +     G    I F T  +      A V F+ +     AL+ +   L 
Sbjct: 34  TATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLG 93

Query: 232 GKTLQMFHSTQSIQKPEAKSNEAAQR 257
            + +++F ST +  +       +A  
Sbjct: 94  KRYIELFRSTAAEVQQVLNRFSSASG 119

>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 123

 Score = 39.1 bits (91), Expect = 4e-04
 Identities = 16/110 (14%), Positives = 37/110 (33%), Gaps = 13/110 (11%)

Query: 10  KTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSR-----ICYVKFF 64
              +V++  +   AT +++   FG    +   +       +              +V F 
Sbjct: 22  NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGK-----EGILFVTYPDGRPTGDAFVLFA 76

Query: 65  DEKCVGISQHLTNTVFIDRALVVTPYNSGEIPDEQRALEIAAQQQGPNSG 114
            E+    +      +   R + +    + E+   Q+ L   +   GP+SG
Sbjct: 77  CEEYAQNALRKHKDLLGKRYIELFRSTAAEV---QQVLNRFSSASGPSSG 123

>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 109

 Score = 45.5 bits (108), Expect = 2e-06
 Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 2/68 (2%)

Query: 177 SVSPQELVDFFQKVGTVNYIRFCTRENDTNK-YALVEFSDQACVIPALKLNGTNLKGKTL 235
           S    ++ DFF  +  V+ +         N    LV+F        ALK N   +  + +
Sbjct: 27  SAMENDVRDFFHGLR-VDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYV 85

Query: 236 QMFHSTQS 243
           ++  +T+ 
Sbjct: 86  EVSPATER 93

>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 Length = 108

 Score = 45.6 bits (108), Expect = 2e-06
 Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 6/65 (9%)

Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPAL-KLNGTNLK 231
            +  S S Q+L D  ++ G V Y      +   +   +VEF  +  +  A+ KL+ T  +
Sbjct: 22  GLPPSGSWQDLKDHMREAGDVCYA-----DVYRDGTGVVEFVRKEDMTYAVRKLDNTKFR 76

Query: 232 GKTLQ 236
               +
Sbjct: 77  SHEGE 81

>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 109

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 5/64 (7%)

Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPAL-KLNGTNLK 231
            I   ++ Q +   F   G +  IR    +     Y+ V FS       A+  +NGT ++
Sbjct: 32  GIASGLTDQLMRQTFSPFGQIMEIRVFPEKG----YSFVRFSTHESAAHAIVSVNGTTIE 87

Query: 232 GKTL 235
           G  +
Sbjct: 88  GHVV 91

>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 102

 Score = 45.1 bits (107), Expect = 2e-06
 Identities = 10/77 (12%), Positives = 32/77 (41%), Gaps = 2/77 (2%)

Query: 177 SVSPQELVDFFQKVGTVNYIRFCTRENDTNK-YALVEFSDQACVIPALKLNGTNLKGKTL 235
             +  ++ +FF  +  +  +      +      A VEF+     + A+  +  N++ + +
Sbjct: 26  RATENDIYNFFSPLNPMR-VHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYV 84

Query: 236 QMFHSTQSIQKPEAKSN 252
           ++F ++ +       S+
Sbjct: 85  ELFLNSTAGTSGSGPSS 101

>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens} Length = 100

 Score = 44.9 bits (107), Expect = 2e-06
 Identities = 13/66 (19%), Positives = 30/66 (45%), Gaps = 4/66 (6%)

Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNK---YALVEFSDQACVIPALKLNGTN 229
           N+   V+ + + +FF+ +     +R     ++  +   +   EF D   ++ AL LN  +
Sbjct: 26  NLPYDVTEESIKEFFRGLNISA-VRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEES 84

Query: 230 LKGKTL 235
           L  + +
Sbjct: 85  LGNRRI 90

>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens} Length = 107

 Score = 44.8 bits (106), Expect = 3e-06
 Identities = 14/85 (16%), Positives = 37/85 (43%), Gaps = 9/85 (10%)

Query: 177 SVSPQELVDFF---QKVGTVNYIRFCTRENDTNK-YALVEFSDQACVIPALKLNGTNLKG 232
           S + +++++FF   +     N I F    +   +  AL+E   +  V  AL+ +   +  
Sbjct: 22  SCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQ 81

Query: 233 KTLQMFHSTQS-----IQKPEAKSN 252
           + ++++          ++  + KS+
Sbjct: 82  RYVEVYEINNEDVDALMKSLQVKSS 106

>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A Length = 136

 Score = 45.4 bits (107), Expect = 3e-06
 Identities = 13/71 (18%), Positives = 28/71 (39%), Gaps = 4/71 (5%)

Query: 177 SVSPQELVDFF---QKVGTVNYIRFCTRENDTNK-YALVEFSDQACVIPALKLNGTNLKG 232
           S S +++ +F            + F           A VE   +  V  ALK +  ++  
Sbjct: 55  SCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGH 114

Query: 233 KTLQMFHSTQS 243
           + +++F S ++
Sbjct: 115 RYIEVFKSHRT 125

>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 91

 Score = 43.8 bits (104), Expect = 4e-06
 Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 2/68 (2%)

Query: 177 SVSPQELVDFFQKVGTVNYIRFCTRENDTNK-YALVEFSDQACVIPALKLNGTNLKGKTL 235
           +V+ + +++F   +  V  IR     +     Y  V+FS++  V  ALK N   + G+ +
Sbjct: 21  NVTEKNVMEFLAPLKPVA-IRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYI 79

Query: 236 QMFHSTQS 243
           ++F     
Sbjct: 80  EVFREKSG 87

>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens} Length = 95

 Score = 43.8 bits (104), Expect = 4e-06
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 2/65 (3%)

Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCT-RENDTNKYALVEFSDQACVIPALK-LNGTNL 230
           N+E  V  + L + F + G +  +  C  RE     +  V F     V  A+  LNG  L
Sbjct: 23  NLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRL 82

Query: 231 KGKTL 235
            G+ +
Sbjct: 83  YGRPI 87

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A Length = 292

 Score = 46.9 bits (112), Expect = 4e-06
 Identities = 8/63 (12%), Positives = 26/63 (41%)

Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALKLNGTNLKG 232
           N+ +S +  ++  +F+  G + ++          ++A +EF+     + A+      +  
Sbjct: 48  NLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKTHKVVGQ 107

Query: 233 KTL 235
             +
Sbjct: 108 NEI 110

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A Length = 292

 Score = 46.1 bits (110), Expect = 8e-06
 Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 3/90 (3%)

Query: 173 NIEESVSPQELVDFFQKVGTVNY-IRFCTRENDTNK-YALVEFSDQACVIPALK-LNGTN 229
           N   S + + + D  Q +  V   IR  +   +T++ +A ++ + +      ++ LNG  
Sbjct: 124 NFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLK 183

Query: 230 LKGKTLQMFHSTQSIQKPEAKSNEAAQREI 259
           ++G TL    S    +     S     REI
Sbjct: 184 IEGYTLVTKVSNPLEKSKRTDSATLEGREI 213

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A Length = 292

 Score = 40.7 bits (96), Expect = 5e-04
 Identities = 12/73 (16%), Positives = 31/73 (42%), Gaps = 4/73 (5%)

Query: 167 RTLVAINIEESVSP-QELVDFFQKVGTVNYIRFCTRENDTNK---YALVEFSDQACVIPA 222
           R ++  N+   +     L + F+  G++  I     + + +     A + F ++     A
Sbjct: 211 REIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERA 270

Query: 223 LKLNGTNLKGKTL 235
           L++N + L  + +
Sbjct: 271 LQMNRSLLGNREI 283

>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens} Length = 110

 Score = 43.9 bits (104), Expect = 6e-06
 Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 5/73 (6%)

Query: 167 RTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNK---YALVEFSDQACVIPAL 223
           + +    + ++V    L D  +K G V  +        T K    A V F+        +
Sbjct: 7   KEVTFARLNDNVRETFLKDMCRKYGEVEEVEIL-LHPRTRKHLGLARVLFTSTRGAKETV 65

Query: 224 -KLNGTNLKGKTL 235
             L+ T++ G  +
Sbjct: 66  KNLHLTSVMGNII 78

>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A Length = 87

 Score = 43.2 bits (102), Expect = 6e-06
 Identities = 13/70 (18%), Positives = 30/70 (42%), Gaps = 7/70 (10%)

Query: 173 NIEESVSPQELVDFFQKVGTVNYIR------FCTRENDTNK-YALVEFSDQACVIPALKL 225
           NI   ++ + ++DFF     +  +           + + +K +A +EF        A+  
Sbjct: 13  NIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAF 72

Query: 226 NGTNLKGKTL 235
           +G   +G++L
Sbjct: 73  DGIIFQGQSL 82

>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A Length = 168

 Score = 44.9 bits (107), Expect = 8e-06
 Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 5/80 (6%)

Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNK---YALVEFSDQACVIPALK-LNGT 228
            + + ++ +EL   F+ +G +N  R   R+  T     YA V+F+ +     A+K LNG 
Sbjct: 10  YLPQDMTDRELYALFRAIGPINTCRIM-RDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGI 68

Query: 229 NLKGKTLQMFHSTQSIQKPE 248
            ++ K L++ ++    +  +
Sbjct: 69  TVRNKRLKVSYARPGGESIK 88

>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae} Length = 101

 Score = 43.1 bits (102), Expect = 9e-06
 Identities = 9/64 (14%), Positives = 21/64 (32%), Gaps = 5/64 (7%)

Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPAL-KLNGTNLK 231
           NI    +  +L+  FQ  G +   +    +        +++         +  L     +
Sbjct: 34  NIPHFATEADLIPLFQNFGFILDFKHYPEKG----CCFIKYDTHEQAAVCIVALANFPFQ 89

Query: 232 GKTL 235
           G+ L
Sbjct: 90  GRNL 93

>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A Length = 193

 Score = 45.2 bits (106), Expect = 9e-06
 Identities = 10/70 (14%), Positives = 22/70 (31%), Gaps = 1/70 (1%)

Query: 167 RTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNK-YALVEFSDQACVIPALKL 225
           R++         +  ++ ++ +  G V  I+     +   K    V F         ++ 
Sbjct: 110 RSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVET 169

Query: 226 NGTNLKGKTL 235
            G   K   L
Sbjct: 170 PGQKYKETDL 179

>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae} Length = 166

 Score = 44.4 bits (106), Expect = 9e-06
 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 2/71 (2%)

Query: 167 RTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNK-YALVEFSDQACVIPALK- 224
           R L   N++++++   L  +FQ  G +  I+    +N+ N  YA VE+        AL+ 
Sbjct: 1   RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQT 60

Query: 225 LNGTNLKGKTL 235
           LNG  ++   +
Sbjct: 61  LNGKQIENNIV 71

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 1e-05
 Identities = 35/295 (11%), Positives = 77/295 (26%), Gaps = 85/295 (28%)

Query: 115 EPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRTLVAINI 174
           E + P+ +T           I   D +   +    +    ++   +   ++R+ L     
Sbjct: 101 EQRQPSMMTRMY--------IEQRDRL--YNDNQVFAKYNVS-RLQPYLKLRQAL----- 144

Query: 175 EESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALV----EFSDQACVIPA----LKLN 226
              + P + V     +G+              K  +           C +      L L 
Sbjct: 145 -LELRPAKNVLIDGVLGS-------------GKTWVALDVCLSYKVQCKMDFKIFWLNLK 190

Query: 227 GTNLKGKTLQMFHSTQSIQKPEAKSNEAAQREIEEAMSRVKEAQNMISAAIDPVIGILSK 286
             N     L+M         P   S       I+  +  ++     +         + SK
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL---------LKSK 241

Query: 287 DKKKSHSPVRHLVIVLIVVDVALDLALEIGDDLEVVVRDVGHVREEDQDHVVDVLC--LV 344
             +            L+V+            +    V++             ++ C  L+
Sbjct: 242 PYENC----------LLVLL-----------N----VQNAKAWN------AFNLSCKILL 270

Query: 345 IVRDPHVARDVHAPDHASVHLDVMMIRNVIVRREVYE---NVPEVKTRASPPLAL 396
             R   V   + A    + H+ +      +   EV        + + +  P   L
Sbjct: 271 TTRFKQVTDFLSAA--TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL 323

>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 97

 Score = 42.9 bits (101), Expect = 1e-05
 Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 4/66 (6%)

Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLK 231
           N+       +L    +++G+V  +R   +       A + + D A    A+  L G  L 
Sbjct: 26  NLPRDARVSDLKRALRELGSVP-LRLTWQGPRR--RAFLHYPDSAAAQQAVSCLQGLRLG 82

Query: 232 GKTLQM 237
             TL++
Sbjct: 83  TDTLRV 88

>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A Length = 216

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 15/89 (16%), Positives = 30/89 (33%), Gaps = 3/89 (3%)

Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCT-RENDTNK-YALVEFSDQACVIPALK-LNGTN 229
           +I   +    +   F   G +  I          +K +A VE+        AL+ +N   
Sbjct: 35  SIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVM 94

Query: 230 LKGKTLQMFHSTQSIQKPEAKSNEAAQRE 258
           L G+ +++   +   Q        A +  
Sbjct: 95  LGGRNIKVGRPSNIGQAQPIIDQLAEEAR 123

>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D* Length = 110

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 5/68 (7%)

Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNK---YALVEFSDQACVIPALK-LNGT 228
           +I E     E+ + F   G +  I     +  T     YALVE+      + A + LNG 
Sbjct: 33  SIHEEAQEDEIQEKFCDYGEIKNIHL-NLDRRTGFSKGYALVEYETHKQALAAKEALNGA 91

Query: 229 NLKGKTLQ 236
            + G+T+Q
Sbjct: 92  EIMGQTIQ 99

>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 93

 Score = 42.2 bits (100), Expect = 2e-05
 Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 12/85 (14%)

Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNK---YALVEFSDQACVIPALK-LNG- 227
           N+  +V+  +L   F                       YA V++ DQ   I A++ L+G 
Sbjct: 15  NLSPAVTADDLRQLFGDRKLP-------LAGQVLLKSGYAFVDYPDQNWAIRAIETLSGK 67

Query: 228 TNLKGKTLQMFHSTQSIQKPEAKSN 252
             L GK +++ +S     +    S+
Sbjct: 68  VELHGKIMEVDYSVSKKLRSSGPSS 92

>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A Length = 165

 Score = 44.1 bits (104), Expect = 2e-05
 Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 5/85 (5%)

Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNK---YALVEFSDQACVIPALK-LNGT 228
           +I E     E+ + F   G +  I     +  T     YALVE+      + A + LNG 
Sbjct: 79  SIHEEAQEDEIQEKFCDYGEIKNIHL-NLDRRTGFSKGYALVEYETHKQALAAKEALNGA 137

Query: 229 NLKGKTLQMFHSTQSIQKPEAKSNE 253
            + G+T+Q+        K   KS +
Sbjct: 138 EIMGQTIQVDWCFVKGPKRVKKSEK 162

>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 119

 Score = 42.6 bits (100), Expect = 2e-05
 Identities = 16/107 (14%), Positives = 36/107 (33%), Gaps = 7/107 (6%)

Query: 151 PPLPITYDTKKIEEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYAL 210
           P      D++      R +    +   V+  E++      G V  +     +N     A 
Sbjct: 16  PRGSHMGDSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKN----QAF 71

Query: 211 VEFSDQACVIPALK---LNGTNLKGKTLQMFHSTQSIQKPEAKSNEA 254
           +E + +      +         L+G+ + +  S     K ++  N+A
Sbjct: 72  IEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDSSPNQA 118

>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens} Length = 99

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 14/74 (18%), Positives = 30/74 (40%), Gaps = 11/74 (14%)

Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCTREN-------DTNK---YALVEFSDQACVIPA 222
            + E+V+ + + D+F+++G +   +   +         +T K    A V F D      A
Sbjct: 20  GLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAA 79

Query: 223 LK-LNGTNLKGKTL 235
           +   +G    G  +
Sbjct: 80  IDWFDGKEFSGNPI 93

>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 42.1 bits (99), Expect = 2e-05
 Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 2/72 (2%)

Query: 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPAL-K 224
            R L   NI   +  + L     + G V        +++T     V +S +     AL K
Sbjct: 15  IRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET-AVVNVTYSSKDQARQALDK 73

Query: 225 LNGTNLKGKTLQ 236
           LNG  L+  TL+
Sbjct: 74  LNGFQLENFTLK 85

>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Length = 99

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 11/64 (17%), Positives = 24/64 (37%), Gaps = 5/64 (7%)

Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLK 231
           N+   ++ +E+   F+K G    +     +     +  +    +     A   L+   L+
Sbjct: 22  NLPPDITEEEMRKLFEKYGKAGEVFIHKDKG----FGFIRLETRTLAEIAKVELDNMPLR 77

Query: 232 GKTL 235
           GK L
Sbjct: 78  GKQL 81

>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 113

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 11/75 (14%)

Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCTREN-------DTNK---YALVEFSDQACVIPA 222
            + +SV+  +L DFF++ G V   +   +         +T K    A V + D      A
Sbjct: 22  GLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAA 81

Query: 223 LK-LNGTNLKGKTLQ 236
           ++  +G + +G  L+
Sbjct: 82  VEWFDGKDFQGSKLK 96

>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 Length = 111

 Score = 42.1 bits (99), Expect = 3e-05
 Identities = 17/113 (15%), Positives = 41/113 (36%), Gaps = 13/113 (11%)

Query: 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPAL-K 224
           +  ++A N+       E+ + F + G++  +       +    A+VEF +      A   
Sbjct: 10  KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLL----PEGGITAIVEFLEPLEARKAFRH 65

Query: 225 LNGTNLKGKTLQMFHSTQSIQK-PEAKSNEAAQREIEEAMSRVKEAQNMISAA 276
           L  +      L        ++  P      A Q++  +     ++A++  S+ 
Sbjct: 66  LAYSKFHHVPL-------YLEWAPIGVFGAAPQKKDSQHEQPAEKAESGPSSG 111

>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1 Length = 104

 Score = 41.7 bits (98), Expect = 3e-05
 Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 8/80 (10%)

Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK---LNGTN 229
            + ESV   +LV+  +K GT+ Y+     +      ALVEF +       +         
Sbjct: 22  GLCESVVEADLVEALEKFGTICYVMMMPFKR----QALVEFENIDSAKECVTFAADVPVY 77

Query: 230 LKGKTLQM-FHSTQSIQKPE 248
           + G+     + +++ I +P 
Sbjct: 78  IAGQQAFFNYSTSKRITRPG 97

>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A Length = 92

 Score = 41.4 bits (98), Expect = 3e-05
 Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 7/67 (10%)

Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNK---YALVEFSDQACVIPAL-KLNGT 228
           N+    + + L D F + G V Y        +  K     +V+F        A   +NG 
Sbjct: 15  NLPFDFTWKMLKDKFNECGHVLYADIKM---ENGKSKGCGVVKFESPEVAERACRMMNGM 71

Query: 229 NLKGKTL 235
            L G+ +
Sbjct: 72  KLSGREI 78

>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B Length = 96

 Score = 41.5 bits (98), Expect = 3e-05
 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 5/67 (7%)

Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNK---YALVEFSDQACVIPAL-KLNGT 228
           +I    + ++++D    VG V  ++    +  T +   YA +EF D      A+  LNG 
Sbjct: 9   SIPYDQTEEQILDLCSNVGPVINLKM-MFDPQTGRSKGYAFIEFRDLESSASAVRNLNGY 67

Query: 229 NLKGKTL 235
            L  + L
Sbjct: 68  QLGSRFL 74

>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 105

 Score = 41.8 bits (98), Expect = 3e-05
 Identities = 14/91 (15%), Positives = 32/91 (35%), Gaps = 7/91 (7%)

Query: 167 RTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-- 224
           R +    +   V+  E++      G V  +     +N     A +E + +      +   
Sbjct: 17  RVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKN----QAFIEMNTEEAANTMVNYY 72

Query: 225 -LNGTNLKGKTLQMFHSTQSIQKPEAKSNEA 254
                 L+G+ + +  S     K ++  N+A
Sbjct: 73  TSVTPVLRGQPIYIQFSNHKELKTDSSPNQA 103

>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A Length = 111

 Score = 41.7 bits (98), Expect = 3e-05
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 173 NIEESVSPQELVDFFQKVGT-VNYIRFCTRENDTNKYALVEFSDQACVIPAL-KLNGTNL 230
           N+ E  S Q+L D  ++      +    TR+ D      +EF  +  ++ AL +LN    
Sbjct: 35  NLPEGCSWQDLKDLARENSLETTFSSVNTRDFDG--TGALEFPSEEILVEALERLNNIEF 92

Query: 231 KGKTL 235
           +G  +
Sbjct: 93  RGSVI 97

>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A* Length = 213

 Score = 43.4 bits (103), Expect = 4e-05
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 5/67 (7%)

Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNK---YALVEFSDQACVIPALK-LNGT 228
           ++   V+   L + F   G +  IR C R+  T +   YA V F   A    AL  +N  
Sbjct: 22  DLHPDVTEAMLYEKFSPAGPILSIRVC-RDMITRRSLGYAYVNFQQPADAERALDTMNFD 80

Query: 229 NLKGKTL 235
            +KGK +
Sbjct: 81  VIKGKPV 87

>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 115

 Score = 41.5 bits (98), Expect = 4e-05
 Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 5/68 (7%)

Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNK---YALVEFSDQACVIPALK-LNGT 228
           N+   V+ ++LV  F +           R   T +    A + F ++     AL  +NG 
Sbjct: 32  NLSPRVTERDLVSLFARFQEKKGPPIQFR-MMTGRMRGQAFITFPNKEIAWQALHLVNGY 90

Query: 229 NLKGKTLQ 236
            L GK L 
Sbjct: 91  KLYGKILV 98

>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1 Length = 106

 Score = 41.5 bits (98), Expect = 4e-05
 Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 5/68 (7%)

Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNK---YALVEFSDQACVIPALK-LNGT 228
            + E  + +++ D F + G +  I     +  T     Y LVE+        A++ LNG 
Sbjct: 30  GVHEEATEEDIHDKFAEYGEIKNIHLNL-DRRTGYLKGYTLVEYETYKEAQAAMEGLNGQ 88

Query: 229 NLKGKTLQ 236
           +L G+ + 
Sbjct: 89  DLMGQPIS 96

>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A Length = 115

 Score = 41.7 bits (98), Expect = 4e-05
 Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 6/65 (9%)

Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPAL-KLNGTNLK 231
            +  S S Q+L D  ++ G V Y      +   +   +VEF  +  +  A+ KL+ T  +
Sbjct: 23  GLPPSGSWQDLKDHMREAGDVCYA-----DVYRDGTGVVEFVRKEDMTYAVRKLDNTKFR 77

Query: 232 GKTLQ 236
               +
Sbjct: 78  SHEGE 82

>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 Length = 97

 Score = 41.1 bits (97), Expect = 4e-05
 Identities = 11/63 (17%), Positives = 23/63 (36%), Gaps = 5/63 (7%)

Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPAL-KLNGTNLK 231
            +  + S   L   F + G++  I     ++    +A +++        A  K+ G  L 
Sbjct: 24  GLGPNTSLAALAREFDRFGSIRTIDHVKGDS----FAYIQYESLDAAQAACAKMRGFPLG 79

Query: 232 GKT 234
           G  
Sbjct: 80  GPD 82

>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X Length = 156

 Score = 42.5 bits (100), Expect = 5e-05
 Identities = 14/66 (21%), Positives = 30/66 (45%), Gaps = 3/66 (4%)

Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCT-RENDTNK-YALVEFSDQACVIPALK-LNGTN 229
           N+    + +++ + F K G +  I     +   T   +  VE+  +A    A++ +NGT 
Sbjct: 46  NLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTR 105

Query: 230 LKGKTL 235
           L  + +
Sbjct: 106 LDDRII 111

>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus} Length = 103

 Score = 41.1 bits (97), Expect = 5e-05
 Identities = 13/65 (20%), Positives = 29/65 (44%), Gaps = 3/65 (4%)

Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCT-RENDTNK-YALVEFSDQACVIPALKLNGTNL 230
           N+  +    ++   F+ +   + +R    ++ D  K +  VEF +   +  AL  +G  L
Sbjct: 22  NLPFNTVQGDIDAIFKDLSIRS-VRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALL 80

Query: 231 KGKTL 235
             ++L
Sbjct: 81  GDRSL 85

>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A Length = 88

 Score = 40.5 bits (95), Expect = 6e-05
 Identities = 11/73 (15%), Positives = 26/73 (35%), Gaps = 6/73 (8%)

Query: 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK- 224
              ++  N+ +  + QE+ D  +         +  R       A V   +      A++ 
Sbjct: 5   SSGILVKNLPQDSNCQEVHDLLKDYDLK--YCYVDRNKR---TAFVTLLNGEQAQNAIQM 59

Query: 225 LNGTNLKGKTLQM 237
            +  + +GK L +
Sbjct: 60  FHQYSFRGKDLIV 72

>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 90

 Score = 40.3 bits (95), Expect = 7e-05
 Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 7/64 (10%)

Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLK 231
           N+    + QE+   F++ G V              Y  V   D+     A++ L+   L 
Sbjct: 15  NLPREATEQEIRSLFEQYGKVLECDI------IKNYGFVHIEDKTAAEDAIRNLHHYKLH 68

Query: 232 GKTL 235
           G  +
Sbjct: 69  GVNI 72

>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 101

 Score = 40.6 bits (95), Expect = 7e-05
 Identities = 14/89 (15%), Positives = 32/89 (35%), Gaps = 8/89 (8%)

Query: 167 RTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-- 224
           R L    +   V+  E++      G V  I     +N     A +E + +   I  +   
Sbjct: 16  RVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKN----QAFLELATEEAAITMVNYY 71

Query: 225 -LNGTNLKGKTLQMFHST-QSIQKPEAKS 251
                +L+ + + + +S  + ++     S
Sbjct: 72  SAVTPHLRNQPIYIQYSNHKELKTSGPSS 100

>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 94

 Score = 39.9 bits (94), Expect = 9e-05
 Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 7/68 (10%)

Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCT-RENDTNK---YALVEFSDQACVIPALK-LNG 227
           N+  S++  +L   F K G V  +     ++  T K    A + F D+       + +N 
Sbjct: 23  NLPFSLTNNDLYRIFSKYGKVVKVTIMKDKD--TRKSKGVAFILFLDKDSAQNCTRAINN 80

Query: 228 TNLKGKTL 235
             L G+ +
Sbjct: 81  KQLFGRVI 88

>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens} Length = 116

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 17/97 (17%), Positives = 37/97 (38%), Gaps = 11/97 (11%)

Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCT-------RENDTNK---YALVEFSDQACVIPA 222
            + E+V+ + + D+F+++G +   +           + +T K    A V F D      A
Sbjct: 14  GLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAA 73

Query: 223 LK-LNGTNLKGKTLQMFHSTQSIQKPEAKSNEAAQRE 258
           +   +G    G  +++  +T+         N     E
Sbjct: 74  IDWFDGKEFSGNPIKVSFATRRADFNRGGGNGRGGLE 110

>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 101

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 5/71 (7%)

Query: 167 RTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNK-YALVEFSDQACVIPALK- 224
           +TLV  N+  S + + L + F+K   +   +    +N  +K YA +EF+       AL  
Sbjct: 16  KTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNS 72

Query: 225 LNGTNLKGKTL 235
            N   ++G+ +
Sbjct: 73  CNKREIEGRAI 83

>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 85

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 13/72 (18%), Positives = 30/72 (41%), Gaps = 6/72 (8%)

Query: 167 RTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-- 224
            TL    + ++++  +L + F + G +  I    R+      A ++F+ +     A +  
Sbjct: 13  TTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQ----CAFIQFATRQAAEVAAEKS 68

Query: 225 LNGTNLKGKTLQ 236
            N   + G+ L 
Sbjct: 69  FNKLIVNGRRLN 80

>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1 Length = 96

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 10/73 (13%)

Query: 167 RTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNK---YALVEFSDQACVIPAL 223
           RTL+A N+  +++  EL + F+    +  +          K    A +EF  +A     L
Sbjct: 17  RTLLAKNLSFNITEDELKEVFEDALEIRLVS------QDGKSKGIAYIEFKSEADAEKNL 70

Query: 224 K-LNGTNLKGKTL 235
           +   G  + G+++
Sbjct: 71  EEKQGAEIDGRSV 83

>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D* Length = 126

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 7/69 (10%)

Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCT-RENDTNK---YALVEFSDQACVIPALK-LNG 227
            + E  + +++ D F + G +  I     R   T     Y LVE+        A++ LNG
Sbjct: 29  GVHEEATEEDIHDKFAEYGEIKNIHLNLDRR--TGYLKGYTLVEYETYKEAQAAMEGLNG 86

Query: 228 TNLKGKTLQ 236
            +L G+ + 
Sbjct: 87  QDLMGQPIS 95

>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 104

 Score = 39.5 bits (93), Expect = 2e-04
 Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 5/83 (6%)

Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNK---YALVEFSDQACVIPALK-LNGT 228
           NI    + ++L D F +VG V   R    + +T K   Y   E+ DQ   + A++ LNG 
Sbjct: 15  NIPYEATEEQLKDIFSEVGPVVSFRLVY-DRETGKPKGYGFCEYQDQETALSAMRNLNGR 73

Query: 229 NLKGKTLQMFHSTQSIQKPEAKS 251
              G+ L++ ++     K E KS
Sbjct: 74  EFSGRALRVDNAASEKNKEELKS 96

>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus} Length = 124

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNK-YALVEFSDQACVIPALK-LNGTNL 230
           N++  VS  ++ + F + GT+         +  +   A V F  +A  + A+K   G  L
Sbjct: 42  NLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPL 101

Query: 231 KGKTL 235
            G+ +
Sbjct: 102 DGRPM 106

>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 2/65 (3%)

Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNK-YALVEFSDQACVIPALK-LNGTNL 230
            +  S + +EL +  +  GTV  +R  T      K  A VE+ +++    A+  ++G  +
Sbjct: 24  GLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTI 83

Query: 231 KGKTL 235
           K   +
Sbjct: 84  KENII 88

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3h2u_B 3h2v_E Length = 284

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 5/67 (7%)

Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNK---YALVEFSDQACVIPAL-KLNGT 228
           N+  S++ Q+  +  +  G++           T +   Y   E+  +     A   L G 
Sbjct: 102 NLPPSLTQQQFEELVRPFGSLERCFLV-YSERTGQSKGYGFAEYMKKDSAARAKSDLLGK 160

Query: 229 NLKGKTL 235
            L  +TL
Sbjct: 161 PLGPRTL 167

>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens} Length = 108

 Score = 38.8 bits (91), Expect = 3e-04
 Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 5/67 (7%)

Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNK---YALVEFSDQACVIPAL-KLNGT 228
           ++  +++   L   F+  G +  I+    +++T +   Y  + FSD  C   AL +LNG 
Sbjct: 33  SLHFNITEDMLRGIFEPFGRIESIQLMM-DSETGRSKGYGFITFSDSECAKKALEQLNGF 91

Query: 229 NLKGKTL 235
            L G+ +
Sbjct: 92  ELAGRPM 98

>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens} Length = 88

 Score = 38.3 bits (90), Expect = 3e-04
 Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 4/67 (5%)

Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNK---YALVEFSDQACVIPALK-LNGT 228
            +  +V+   +++ F   G +  I         +    YA VEF +      ALK ++G 
Sbjct: 11  RLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGG 70

Query: 229 NLKGKTL 235
            + G+ +
Sbjct: 71  QIDGQEI 77

>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A Length = 196

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 7/88 (7%)

Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNK---YALVEFSDQACVIPALKLNGTN 229
            I+E      L D+F++ G +  I   T +  + K   +A V F D   V   +      
Sbjct: 111 GIKEDTEEHHLRDYFEQYGKIEVIEIMT-DRGSGKKRGFAFVTFDDHDSVDKIVIQKYHT 169

Query: 230 LKGKTLQMFHSTQSIQKPEAKSNEAAQR 257
           + G         +++ K E  S  ++QR
Sbjct: 170 VNGHNC---EVRKALSKQEMASASSSQR 194

>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 95

 Score = 38.3 bits (90), Expect = 4e-04
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 5/67 (7%)

Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNK---YALVEFSDQACVIPAL-KLNGT 228
           ++  +++   L   F+  G ++ I     ++DT +   Y  + FSD  C   AL +LNG 
Sbjct: 12  SLHFNITEDMLRGIFEPFGKIDNIVLMK-DSDTGRSKGYGFITFSDSECARRALEQLNGF 70

Query: 229 NLKGKTL 235
            L G+ +
Sbjct: 71  ELAGRPM 77

>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B Length = 261

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 11/65 (16%), Positives = 26/65 (40%), Gaps = 5/65 (7%)

Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLK 231
           N+   ++ ++    F++ G  + +       D   +  +    +     A   L+GT LK
Sbjct: 29  NLPTDITEEDFKRLFERYGEPSEVFIN---RDRG-FGFIRLESRTLAEIAKAELDGTILK 84

Query: 232 GKTLQ 236
            + L+
Sbjct: 85  SRPLR 89

>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A Length = 108

 Score = 38.4 bits (90), Expect = 4e-04
 Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 7/64 (10%)

Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPAL-KLNGTNLK 231
                V   EL + F   G +  ++        N +A VEF +      A+ +++G +  
Sbjct: 38  PFPLDVQESELNEIFGPFGPMKEVKI------LNGFAFVEFEEAESAAKAIEEVHGKSFA 91

Query: 232 GKTL 235
            + L
Sbjct: 92  NQPL 95

>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 109

 Score = 38.5 bits (90), Expect = 4e-04
 Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 2/64 (3%)

Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLK 231
           N+   +  +++ D F K G +  I    R      +A VEF D      A+   +G +  
Sbjct: 29  NLPPDIRTKDIEDVFYKYGAIRDIDLKNRRG-GPPFAFVEFEDPRDAEDAVYGRDGYDYD 87

Query: 232 GKTL 235
           G  L
Sbjct: 88  GYRL 91

>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 Length = 111

 Score = 38.5 bits (90), Expect = 5e-04
 Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 14/93 (15%)

Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNK---YALVEFSDQACVIPALK----- 224
           N+      + L +  Q+ G + Y+R      DT      A  +F  Q      L      
Sbjct: 22  NLSFDSEEEALGEVLQQFGDLKYVRVVL-HPDTEHSKGCAFAQFMTQEAAQKCLAAASLE 80

Query: 225 --LNGTNLKGKTLQMFHSTQSIQKPEAKSNEAA 255
               G  L G+ L++     ++ + EA S  ++
Sbjct: 81  AEGGGLKLDGRQLKV---DLAVTRDEAASGPSS 110

>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 92

 Score = 38.0 bits (89), Expect = 5e-04
 Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 7/64 (10%)

Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLK 231
           NI  + + QEL   F++ G V              YA V        + A++ L+ T  +
Sbjct: 17  NISPTCTNQELRAKFEEYGPVIECDI------VKDYAFVHMERAEDAVEAIRGLDNTEFQ 70

Query: 232 GKTL 235
           GK +
Sbjct: 71  GKRM 74

>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A Length = 107

 Score = 38.0 bits (89), Expect = 6e-04
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 2/65 (3%)

Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNK-YALVEFSDQACVIPALK-LNGTNL 230
           N++  VS  ++ + F + GT+         +  +   A V F  +A  + A+K  NG  L
Sbjct: 36  NLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPL 95

Query: 231 KGKTL 235
            G+ +
Sbjct: 96  DGRPM 100

>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ALT splicing, mRNA processing, mRNA splicing; 1.85A {Homo sapiens} PDB: 2kyx_A 3lpy_A* Length = 85

 Score = 37.5 bits (88), Expect = 6e-04
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 5/67 (7%)

Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNK---YALVEFSDQACVIPALK-LNGT 228
            + E V  + L   F   G +  I+    + +T K   +A VEF        A+  +N +
Sbjct: 14  GLAEEVDDKVLHAAFIPFGDITDIQIPL-DYETEKHRGFAFVEFELAEDAAAAIDNMNES 72

Query: 229 NLKGKTL 235
            L G+T+
Sbjct: 73  ELFGRTI 79

>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens} Length = 100

 Score = 37.8 bits (88), Expect = 7e-04
 Identities = 19/97 (19%), Positives = 35/97 (36%), Gaps = 7/97 (7%)

Query: 148 PQYPPLPITYDTKKIEEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNK 207
             +      YD          +    + + V   +LV+  Q+ G ++Y+    ++     
Sbjct: 3   HHHHHHMENYDDPHKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKR---- 58

Query: 208 YALVEFSDQACVIPALK---LNGTNLKGKTLQMFHST 241
            ALVEF D      A+     N   + G    + +ST
Sbjct: 59  QALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYST 95

>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus} Length = 177

 Score = 39.1 bits (91), Expect = 8e-04
 Identities = 14/65 (21%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNK-YALVEFSDQACVIPAL-KLNGTNL 230
           N++  VS  ++ + F + GT+         +  +   A V F  +A  + A+ +  G  L
Sbjct: 95  NLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPL 154

Query: 231 KGKTL 235
            G+ +
Sbjct: 155 DGRPM 159

>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 90

 Score = 37.2 bits (87), Expect = 9e-04
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 7/64 (10%)

Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLK 231
           N+  + + QEL   F++ G V              YA V    +A    A+  LNG  +K
Sbjct: 16  NVSAACTSQELRSLFERRGRVIECDV------VKDYAFVHMEKEADAKAAIAQLNGKEVK 69

Query: 232 GKTL 235
           GK +
Sbjct: 70  GKRI 73

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	405
4f02_A	213	Polyadenylate-binding protein 1; mRNA, eukaryotic	99.98
3md3_A	166	Nuclear and cytoplasmic polyadenylated RNA-bindin	99.97
1l3k_A	196	Heterogeneous nuclear ribonucleoprotein A1; nuclea	99.97
1b7f_A	168	Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP	99.97
2cjk_A	167	Nuclear polyadenylated RNA-binding protein 4; HRP1	99.97
2qfj_A	216	FBP-interacting repressor; protein-DNA complex; HE	99.97
1fxl_A	167	Paraneoplastic encephalomyelitis antigen HUD; prot	99.97
3nmr_A	175	Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl	99.97
2g4b_A	172	Splicing factor U2AF 65 kDa subunit; protein-RNA c	99.96
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	99.96
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	99.96
2yh0_A	198	Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli	99.96
3pgw_A	282	U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c	99.96
1fje_B	175	Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin	99.96
2adc_A	229	Polypyrimidine tract-binding protein 1; RBD, RRM,	99.95
3tyt_A	205	Heterogeneous nuclear ribonucleoprotein L; ferredo	99.95
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	99.94
3sde_A	261	Paraspeckle component 1; RRM, anti parallel right	99.94
1qm9_A	198	Polypyrimidine tract-binding protein; ribonucleopr	99.94
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	99.94
2kn4_A	158	Immunoglobulin G-binding protein G, splicing FACT	99.81
4fxv_A	99	ELAV-like protein 1; RNA recognition motif, putati	99.78
4f25_A	115	Polyadenylate-binding protein 1; RRM fold, transla	99.76
2i2y_A	150	Fusion protein consists of immunoglobin G- binding	99.75
4f25_A	115	Polyadenylate-binding protein 1; RRM fold, transla	99.74
3s8s_A	110	Histone-lysine N-methyltransferase SETD1A; chromat	99.73
2err_A	109	Ataxin-2-binding protein 1; protein-RNA complex, R	99.72
2lkz_A	95	RNA-binding protein 5; RRM; NMR {Homo sapiens}	99.72
2lxi_A	91	RNA-binding protein 10; NMR {Homo sapiens}	99.72
2cq3_A	103	RNA-binding protein 9; RRM domain, structural geno	99.72
2cqi_A	103	Nucleolysin TIAR; RNA recognition motif, RRM, RNA	99.72
4f02_A	213	Polyadenylate-binding protein 1; mRNA, eukaryotic	99.71
3s7r_A	87	Heterogeneous nuclear ribonucleoprotein A/B; ferre	99.71
3mdf_A	85	Peptidyl-prolyl CIS-trans isomerase E; RRM domain,	99.71
2dgs_A	99	DAZ-associated protein 1; RRM domain, structural g	99.71
1s79_A	103	Lupus LA protein; RRM, alpha/beta, RNA binding pro	99.71
3p5t_L	90	Cleavage and polyadenylation specificity factor S;	99.71
3md1_A	83	Nuclear and cytoplasmic polyadenylated RNA-bindin	99.7
3md3_A	166	Nuclear and cytoplasmic polyadenylated RNA-bindin	99.7
2dgv_A	92	HnRNP M, heterogeneous nuclear ribonucleoprotein M	99.7
3bs9_A	87	Nucleolysin TIA-1 isoform P40; RNA recognition mot	99.7
1whw_A	99	Hypothetical protein riken cDNA 1200009A02; RNA re	99.7
2d9p_A	103	Polyadenylate-binding protein 3; RRM domain, struc	99.7
2cqc_A	95	Arginine/serine-rich splicing factor 10; RNA recog	99.7
2x1f_A	96	MRNA 3'-END-processing protein RNA15; transcriptio	99.7
2ywk_A	95	Putative RNA-binding protein 11; RRM-domain, struc	99.7
2cqb_A	102	Peptidyl-prolyl CIS-trans isomerase E; RNA recogni	99.7
3ucg_A	89	Polyadenylate-binding protein 2; ferredoxin-like,	99.7
2cq4_A	114	RNA binding motif protein 23; RRM domain, structur	99.69
2cph_A	107	RNA binding motif protein 19; RNA recognition moti	99.69
2dnz_A	95	Probable RNA-binding protein 23; RNA recognition m	99.69
2e5h_A	94	Zinc finger CCHC-type and RNA-binding motif- conta	99.69
2cq0_A	103	Eukaryotic translation initiation factor 3 subunit	99.69
2dgo_A	115	Cytotoxic granule-associated RNA binding protein 1	99.69
1x5t_A	96	Splicing factor 3B subunit 4; structure genomics,	99.69
2krb_A	81	Eukaryotic translation initiation factor 3 subunit	99.69
2la6_A	99	RNA-binding protein FUS; structural genomics, nort	99.69
1fxl_A	167	Paraneoplastic encephalomyelitis antigen HUD; prot	99.69
2cpz_A	115	CUG triplet repeat RNA-binding protein 1; RRM doma	99.69
2do4_A	100	Squamous cell carcinoma antigen recognized by T- c	99.69
2khc_A	118	Testis-specific RNP-type RNA binding protein; RRM,	99.69
3r27_A	100	HnRNP L, heterogeneous nuclear ribonucleoprotein L	99.69
2dgx_A	96	KIAA0430 protein; RRM domain, structural genomics,	99.69
2rs2_A	109	Musashi-1, RNA-binding protein musashi homolog 1;	99.69
2dnm_A	103	SRP46 splicing factor; RRM domain, RBD, structural	99.69
1x5u_A	105	Splicing factor 3B subunit 4 (spliceosome associat	99.69
2mss_A	75	Protein (musashi1); RNA-binding domain, RNA bindin	99.68
3ns6_A	100	Eukaryotic translation initiation factor 3 subuni;	99.68
1b7f_A	168	Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP	99.68
2jrs_A	108	RNA-binding protein 39; RNA binding motif of RBM39	99.68
2cpf_A	98	RNA binding motif protein 19; RNA recognition moti	99.68
1sjq_A	105	Polypyrimidine tract-binding protein 1; babbab mot	99.68
2dnh_A	105	Bruno-like 5, RNA binding protein; RRM domain, RBD	99.68
1x5s_A	102	Cold-inducible RNA-binding protein; structure geno	99.68
2nlw_A	105	Eukaryotic translation initiation factor 3 subunit	99.68
2fy1_A	116	RNA-binding motif protein, Y chromosome, family 1	99.68
1x4h_A	111	RNA-binding protein 28; structural genomics, RRM d	99.68
1l3k_A	196	Heterogeneous nuclear ribonucleoprotein A1; nuclea	99.68
3ulh_A	107	THO complex subunit 4; nuclear protein, RNA bindin	99.67
2dng_A	103	Eukaryotic translation initiation factor 4H; RRM d	99.67
2cqd_A	116	RNA-binding region containing protein 1; RNA recog	99.67
1p27_B	106	RNA-binding protein 8A; nuclear protein, mRNA spli	99.67
2div_A	99	TRNA selenocysteine associated protein; structural	99.67
2cpy_A	114	RNA-binding protein 12; RRM domain, structural gen	99.67
4a8x_A	88	RNA-binding protein with serine-rich domain 1; tra	99.67
2wbr_A	89	GW182, gawky, LD47780P; DNA-binding protein, RRM,	99.66
2dgp_A	106	Bruno-like 4, RNA binding protein; RRM domain, str	99.66
2j76_E	100	EIF-4B, EIF4B, eukaryotic translation initiation f	99.66
3n9u_C	156	Cleavage and polyadenylation specificity factor S;	99.66
2do0_A	114	HnRNP M, heterogeneous nuclear ribonucleoprotein M	99.66
1oo0_B	110	CG8781-PA, drosophila Y14; RNA recognition motif,	99.66
1x4a_A	109	Splicing factor, arginine/serine-rich 1 (splicing	99.66
2dh8_A	105	DAZ-associated protein 1; RRM domain, structural g	99.66
1wi8_A	104	EIF-4B, eukaryotic translation initiation factor 4	99.66
2jwn_A	124	Embryonic polyadenylate-binding protein 2-B; epabp	99.66
2cq1_A	101	PTB-like protein L; RRM domain, structural genomic	99.66
1wg5_A	104	Heterogeneous nuclear ribonucleoprotein H; structu	99.66
2cpe_A	113	RNA-binding protein EWS; RNA recognition motif, RR	99.66
1u6f_A	139	Tcubp1, RNA-binding protein UBP1; trypanosome, mRN	99.66
2kt5_A	124	RNA and export factor-binding protein 2; chaperone	99.66
1x4b_A	116	Heterogeneous nuclear ribonucleoproteins A2/B1; st	99.66
2cpi_A	111	CCR4-NOT transcription complex subunit 4; RNA reco	99.65
2dgw_A	91	Probable RNA-binding protein 19; RRM domain, struc	99.65
2db1_A	118	Heterogeneous nuclear ribonucleoprotein F; RRM dom	99.65
3lqv_A	115	PRE-mRNA branch site protein P14; cysless mutant,	99.65
2kxn_B	129	Transformer-2 protein homolog beta; SR protein, RR	99.65
2ad9_A	119	Polypyrimidine tract-binding protein 1; RBD, RRM,	99.65
1p1t_A	104	Cleavage stimulation factor, 64 kDa subunit; RNA r	99.65
3tyt_A	205	Heterogeneous nuclear ribonucleoprotein L; ferredo	99.65
2dnq_A	90	RNA-binding protein 4B; RRM domain,RBD, structural	99.65
2dhg_A	104	TRNA selenocysteine associated protein (SECP43); R	99.65
2dnn_A	109	RNA-binding protein 12; RRM domain, RBD, structura	99.65
2lea_A	135	Serine/arginine-rich splicing factor 2; SR protein	99.65
1wex_A	104	Hypothetical protein (riken cDNA 2810036L13); stru	99.64
2ytc_A	85	PRE-mRNA-splicing factor RBM22; RRM domain, RBD, s	99.64
1x4e_A	85	RNA binding motif, single-stranded interacting pro	99.64
1wez_A	102	HnRNP H', FTP-3, heterogeneous nuclear ribonucleop	99.64
2cqp_A	98	RNA-binding protein 12; RNA recognition motif, RRM	99.64
1iqt_A	75	AUF1, heterogeneous nuclear ribonucleoprotein D0;	99.64
2ek1_A	95	RNA-binding protein 12; RNA recognition motif, dim	99.64
2cqg_A	103	TDP-43, TAR DNA-binding protein-43; RNA recognitio	99.64
2ki2_A	90	SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA	99.64
2jvr_A	111	Nucleolar protein 3; RNA recognition motif, nucleu	99.64
1whx_A	111	Hypothetical protein riken cDNA 1200009A02; RNA re	99.64
1uaw_A	77	Mouse-musashi-1; RNP-type structure, RNA binding p	99.64
2jvo_A	108	Nucleolar protein 3; nucleus, phosphorylation, rib	99.64
2a3j_A	127	U1 small nuclear ribonucleoprotein A; computationa	99.64
2qfj_A	216	FBP-interacting repressor; protein-DNA complex; HE	99.64
2cjk_A	167	Nuclear polyadenylated RNA-binding protein 4; HRP1	99.64
2dgt_A	92	RNA-binding protein 30; RRM domain, structural gen	99.64
3pgw_S	437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	99.63
3ex7_B	126	RNA-binding protein 8A; protein-RNA complex, mRNA	99.63
2xnq_A	97	Nuclear polyadenylated RNA-binding protein 3; tran	99.63
2ku7_A	140	MLL1 PHD3-CYP33 RRM chimeric protein; transcriptio	99.63
2hgl_A	136	HNRPF protein, heterogeneous nuclear ribonucleopro	99.63
2dnp_A	90	RNA-binding protein 14; RRM domain, RBD, structura	99.63
2dis_A	109	Unnamed protein product; structural genomics, RRM	99.63
2la4_A	101	Nuclear and cytoplasmic polyadenylated RNA-bindin	99.62
2cpd_A	99	Apobec-1 stimulating protein; RNA recognition moti	99.62
1x4d_A	102	Matrin 3; structural genomics, RRM domain, NPPSFA,	99.62
1x4c_A	108	Splicing factor, arginine/serine-rich 1; structura	99.62
2fc9_A	101	NCL protein; structure genomics, RRM_1 domain, str	99.62
4fxv_A	99	ELAV-like protein 1; RNA recognition motif, putati	99.62
1x4g_A	109	Nucleolysin TIAR; structural genomics, RRM domain,	99.62
1nu4_A	97	U1A RNA binding domain; RNA recognition motif, U1	99.62
2lmi_A	107	GRSF-1, G-rich sequence factor 1; G-rich RNA seque	99.62
3pgw_A	282	U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c	99.62
1h2v_Z	156	20 kDa nuclear CAP binding protein; CAP-binding-co	99.62
2m2b_A	131	RNA-binding protein 10; T-cell, JCSG, MPP, PSI-bio	99.62
2cpj_A	99	Non-POU domain-containing octamer-binding protein;	99.61
2g4b_A	172	Splicing factor U2AF 65 kDa subunit; protein-RNA c	99.61
3s8s_A	110	Histone-lysine N-methyltransferase SETD1A; chromat	99.61
2hvz_A	101	Splicing factor, arginine/serine-rich 7; RRM, RNA	99.61
1fjc_A	96	Nucleolin RBD2, protein C23; RNP, RRM, RNA binding	99.61
1wel_A	124	RNA-binding protein 12; structural genomics, NPPSF	99.6
1why_A	97	Hypothetical protein riken cDNA 1810017N16; RNA re	99.6
1x5o_A	114	RNA binding motif, single-stranded interacting pro	99.6
2dha_A	123	FLJ20171 protein; RRM domain, structural genomics,	99.6
2e5j_A	97	Methenyltetrahydrofolate synthetase domain contain	99.6
2cpx_A	115	Hypothetical protein FLJ11016; RRM domain, structu	99.6
2xs2_A	102	Deleted in azoospermia-like; RNA binding protein-R	99.6
2dgu_A	103	Heterogeneous nuclear ribonucleoprotein Q; RRM dom	99.6
1fj7_A	101	Nucleolin RBD1, protein C23; RNP, RRM, RNA binding	99.59
2hgm_A	126	HNRPF protein, heterogeneous nuclear ribonucleopro	99.59
2lxi_A	91	RNA-binding protein 10; NMR {Homo sapiens}	99.59
2cqh_A	93	IGF-II mRNA-binding protein 2 isoform A; RNA recog	99.59
1x4f_A	112	Matrin 3; structural genomics, RRM domain, NPPSFA,	99.59
2kvi_A	96	Nuclear polyadenylated RNA-binding protein 3; RNA-	99.59
1rk8_A	165	CG8781-PA, CG8781-PA protein; mRNA processing, RRM	99.59
2e5g_A	94	U6 snRNA-specific terminal uridylyltransferase 1;	99.59
3q2s_C	229	Cleavage and polyadenylation specificity factor S;	99.59
3nmr_A	175	Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl	99.59
3s7r_A	87	Heterogeneous nuclear ribonucleoprotein A/B; ferre	99.59
1wf1_A	110	RNA-binding protein RALY; structural genomics, RRM	99.58
1fje_B	175	Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin	99.58
2yh0_A	198	Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli	99.58
2hzc_A	87	Splicing factor U2AF 65 kDa subunit; RNA splicing,	99.58
3egn_A	143	RNA-binding protein 40; RNA recognition motif (RRM	99.58
1x5p_A	97	Negative elongation factor E; structure genomics,	99.58
2hgn_A	139	Heterogeneous nuclear ribonucleoprotein F; RNA rec	99.57
1wg1_A	88	KIAA1579 protein, homolog EXC-7; RBD, structural g	99.57
2lkz_A	95	RNA-binding protein 5; RRM; NMR {Homo sapiens}	99.57
1s79_A	103	Lupus LA protein; RRM, alpha/beta, RNA binding pro	99.57
3mdf_A	85	Peptidyl-prolyl CIS-trans isomerase E; RRM domain,	99.56
2e5h_A	94	Zinc finger CCHC-type and RNA-binding motif- conta	99.56
2adc_A	229	Polypyrimidine tract-binding protein 1; RBD, RRM,	99.55
1whw_A	99	Hypothetical protein riken cDNA 1200009A02; RNA re	99.55
2fc8_A	102	NCL protein; structure genomics, RRM_1 domain, str	99.55
3d2w_A	89	TAR DNA-binding protein 43; DP-43 proteinopathy, T	99.55
3lqv_A	115	PRE-mRNA branch site protein P14; cysless mutant,	99.55
2cq2_A	114	Hypothetical protein LOC91801; RRM domain, structu	99.55
2dnz_A	95	Probable RNA-binding protein 23; RNA recognition m	99.55
2f3j_A	177	RNA and export factor binding protein 2; RRM domai	99.55
2dgs_A	99	DAZ-associated protein 1; RRM domain, structural g	99.55
2cpf_A	98	RNA binding motif protein 19; RNA recognition moti	99.54
3md1_A	83	Nuclear and cytoplasmic polyadenylated RNA-bindin	99.54
2cqc_A	95	Arginine/serine-rich splicing factor 10; RNA recog	99.54
3bs9_A	87	Nucleolysin TIA-1 isoform P40; RNA recognition mot	99.54
2lcw_A	116	RNA-binding protein FUS; RRM, nucleic acid binding	99.31
2ywk_A	95	Putative RNA-binding protein 11; RRM-domain, struc	99.54
3zzy_A	130	Polypyrimidine tract-binding protein 1; protein bi	99.54
2diu_A	96	KIAA0430 protein; structural genomics, RRM domain,	99.53
1sjq_A	105	Polypyrimidine tract-binding protein 1; babbab mot	99.53
3ucg_A	89	Polyadenylate-binding protein 2; ferredoxin-like,	99.53
2e44_A	96	Insulin-like growth factor 2 mRNA binding protein	99.53
2cq0_A	103	Eukaryotic translation initiation factor 3 subunit	99.53
2x1f_A	96	MRNA 3'-END-processing protein RNA15; transcriptio	99.53
3beg_B	115	Splicing factor, arginine/serine-rich 1; kinase, S	99.53
2div_A	99	TRNA selenocysteine associated protein; structural	99.53
1qm9_A	198	Polypyrimidine tract-binding protein; ribonucleopr	99.53
1sjr_A	164	Polypyrimidine tract-binding protein 1; extended b	99.53
1x5t_A	96	Splicing factor 3B subunit 4; structure genomics,	99.53
2dh8_A	105	DAZ-associated protein 1; RRM domain, structural g	99.52
2voo_A	193	Lupus LA protein; RNA-binding protein, RNA recogni	99.52
2dnm_A	103	SRP46 splicing factor; RRM domain, RBD, structural	99.52
3r27_A	100	HnRNP L, heterogeneous nuclear ribonucleoprotein L	99.52
3ns6_A	100	Eukaryotic translation initiation factor 3 subuni;	99.52
2la6_A	99	RNA-binding protein FUS; structural genomics, nort	99.52
1x5u_A	105	Splicing factor 3B subunit 4 (spliceosome associat	99.52
2rs2_A	109	Musashi-1, RNA-binding protein musashi homolog 1;	99.52
2do4_A	100	Squamous cell carcinoma antigen recognized by T- c	99.52
2wbr_A	89	GW182, gawky, LD47780P; DNA-binding protein, RRM,	99.52
1x4h_A	111	RNA-binding protein 28; structural genomics, RRM d	99.52
2jrs_A	108	RNA-binding protein 39; RNA binding motif of RBM39	99.52
2dnh_A	105	Bruno-like 5, RNA binding protein; RRM domain, RBD	99.52
1wf0_A	88	TDP-43, TAR DNA-binding protein-43; structural gen	99.52
2cqd_A	116	RNA-binding region containing protein 1; RNA recog	99.52
2dgo_A	115	Cytotoxic granule-associated RNA binding protein 1	99.51
2cq3_A	103	RNA-binding protein 9; RRM domain, structural geno	99.51
3p5t_L	90	Cleavage and polyadenylation specificity factor S;	99.51
1x4e_A	85	RNA binding motif, single-stranded interacting pro	99.51
1wg5_A	104	Heterogeneous nuclear ribonucleoprotein H; structu	99.51
2cqb_A	102	Peptidyl-prolyl CIS-trans isomerase E; RNA recogni	99.51
2cqi_A	103	Nucleolysin TIAR; RNA recognition motif, RRM, RNA	99.51
2khc_A	118	Testis-specific RNP-type RNA binding protein; RRM,	99.51
3sde_A	261	Paraspeckle component 1; RRM, anti parallel right	99.51
1uaw_A	77	Mouse-musashi-1; RNP-type structure, RNA binding p	99.51
2e5i_A	124	Heterogeneous nuclear ribonucleoprotein L-like; RR	99.51
2cpz_A	115	CUG triplet repeat RNA-binding protein 1; RRM doma	99.51
2fy1_A	116	RNA-binding motif protein, Y chromosome, family 1	99.5
1p27_B	106	RNA-binding protein 8A; nuclear protein, mRNA spli	99.5
2krb_A	81	Eukaryotic translation initiation factor 3 subunit	99.5
2dgv_A	92	HnRNP M, heterogeneous nuclear ribonucleoprotein M	99.5
1wez_A	102	HnRNP H', FTP-3, heterogeneous nuclear ribonucleop	99.5
2d9p_A	103	Polyadenylate-binding protein 3; RRM domain, struc	99.5
2err_A	109	Ataxin-2-binding protein 1; protein-RNA complex, R	99.5
2mss_A	75	Protein (musashi1); RNA-binding domain, RNA bindin	99.5
2cph_A	107	RNA binding motif protein 19; RNA recognition moti	99.5
3ulh_A	107	THO complex subunit 4; nuclear protein, RNA bindin	99.5
1x5s_A	102	Cold-inducible RNA-binding protein; structure geno	99.5
2dgp_A	106	Bruno-like 4, RNA binding protein; RRM domain, str	99.49
2kxn_B	129	Transformer-2 protein homolog beta; SR protein, RR	99.49
2j8a_A	136	Histone-lysine N-methyltransferase, H3 lysine-4 sp	99.49
4a8x_A	88	RNA-binding protein with serine-rich domain 1; tra	99.49
2dnl_A	114	Cytoplasmic polyadenylation element binding protei	99.49
2ek1_A	95	RNA-binding protein 12; RNA recognition motif, dim	99.49
2nlw_A	105	Eukaryotic translation initiation factor 3 subunit	99.49
1oo0_B	110	CG8781-PA, drosophila Y14; RNA recognition motif,	99.49
2do0_A	114	HnRNP M, heterogeneous nuclear ribonucleoprotein M	99.49
2cpy_A	114	RNA-binding protein 12; RRM domain, structural gen	99.49
2dng_A	103	Eukaryotic translation initiation factor 4H; RRM d	99.49
2dhg_A	104	TRNA selenocysteine associated protein (SECP43); R	99.49
3n9u_C	156	Cleavage and polyadenylation specificity factor S;	99.48
2hvz_A	101	Splicing factor, arginine/serine-rich 7; RRM, RNA	99.48
1u6f_A	139	Tcubp1, RNA-binding protein UBP1; trypanosome, mRN	99.48
1p1t_A	104	Cleavage stimulation factor, 64 kDa subunit; RNA r	99.48
1iqt_A	75	AUF1, heterogeneous nuclear ribonucleoprotein D0;	99.48
2cqp_A	98	RNA-binding protein 12; RNA recognition motif, RRM	99.48
1x4a_A	109	Splicing factor, arginine/serine-rich 1 (splicing	99.48
2cpe_A	113	RNA-binding protein EWS; RNA recognition motif, RR	99.48
2cq4_A	114	RNA binding motif protein 23; RRM domain, structur	99.47
1wi8_A	104	EIF-4B, eukaryotic translation initiation factor 4	99.47
2bz2_A	121	Negative elongation factor E; NELF E, RNA recognit	99.47
2ytc_A	85	PRE-mRNA-splicing factor RBM22; RRM domain, RBD, s	99.47
2cpi_A	111	CCR4-NOT transcription complex subunit 4; RNA reco	99.47
2cq1_A	101	PTB-like protein L; RRM domain, structural genomic	99.47
1wex_A	104	Hypothetical protein (riken cDNA 2810036L13); stru	99.47
2db1_A	118	Heterogeneous nuclear ribonucleoprotein F; RRM dom	99.47
2dis_A	109	Unnamed protein product; structural genomics, RRM	99.47
2dnq_A	90	RNA-binding protein 4B; RRM domain,RBD, structural	99.47
2pe8_A	105	Splicing factor 45; RRM, protein binding; 2.00A {H	99.46
2cqg_A	103	TDP-43, TAR DNA-binding protein-43; RNA recognitio	99.46
2jvr_A	111	Nucleolar protein 3; RNA recognition motif, nucleu	99.46
1why_A	97	Hypothetical protein riken cDNA 1810017N16; RNA re	99.46
2dgx_A	96	KIAA0430 protein; RRM domain, structural genomics,	99.46
1x4b_A	116	Heterogeneous nuclear ribonucleoproteins A2/B1; st	99.46
2ku7_A	140	MLL1 PHD3-CYP33 RRM chimeric protein; transcriptio	99.46
3ex7_B	126	RNA-binding protein 8A; protein-RNA complex, mRNA	99.46
2ad9_A	119	Polypyrimidine tract-binding protein 1; RBD, RRM,	99.46
2kt5_A	124	RNA and export factor-binding protein 2; chaperone	99.45
2dgw_A	91	Probable RNA-binding protein 19; RRM domain, struc	99.45
2la4_A	101	Nuclear and cytoplasmic polyadenylated RNA-bindin	99.45
2hgl_A	136	HNRPF protein, heterogeneous nuclear ribonucleopro	99.45
2m2b_A	131	RNA-binding protein 10; T-cell, JCSG, MPP, PSI-bio	99.45
1wel_A	124	RNA-binding protein 12; structural genomics, NPPSF	99.45
2xnq_A	97	Nuclear polyadenylated RNA-binding protein 3; tran	99.45
1x4d_A	102	Matrin 3; structural genomics, RRM domain, NPPSFA,	99.45
2hgm_A	126	HNRPF protein, heterogeneous nuclear ribonucleopro	99.45
2dnn_A	109	RNA-binding protein 12; RRM domain, RBD, structura	99.45
2cpj_A	99	Non-POU domain-containing octamer-binding protein;	99.44
2xs2_A	102	Deleted in azoospermia-like; RNA binding protein-R	99.44
2dha_A	123	FLJ20171 protein; RRM domain, structural genomics,	99.44
2j76_E	100	EIF-4B, EIF4B, eukaryotic translation initiation f	99.44
2ki2_A	90	SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA	99.44
1h2v_Z	156	20 kDa nuclear CAP binding protein; CAP-binding-co	99.43
2jwn_A	124	Embryonic polyadenylate-binding protein 2-B; epabp	99.43
2lmi_A	107	GRSF-1, G-rich sequence factor 1; G-rich RNA seque	99.43
2a3j_A	127	U1 small nuclear ribonucleoprotein A; computationa	99.43
2kn4_A	158	Immunoglobulin G-binding protein G, splicing FACT	99.43
2dgt_A	92	RNA-binding protein 30; RRM domain, structural gen	99.43
1x4c_A	108	Splicing factor, arginine/serine-rich 1; structura	99.43
1x5o_A	114	RNA binding motif, single-stranded interacting pro	99.43
3d2w_A	89	TAR DNA-binding protein 43; DP-43 proteinopathy, T	99.42
2dnp_A	90	RNA-binding protein 14; RRM domain, RBD, structura	99.42
2dgu_A	103	Heterogeneous nuclear ribonucleoprotein Q; RRM dom	99.42
2cpd_A	99	Apobec-1 stimulating protein; RNA recognition moti	99.42
1whx_A	111	Hypothetical protein riken cDNA 1200009A02; RNA re	99.41
2fc9_A	101	NCL protein; structure genomics, RRM_1 domain, str	99.41
2kvi_A	96	Nuclear polyadenylated RNA-binding protein 3; RNA-	99.41
1x4g_A	109	Nucleolysin TIAR; structural genomics, RRM domain,	99.41
1rk8_A	165	CG8781-PA, CG8781-PA protein; mRNA processing, RRM	99.41
3q2s_C	229	Cleavage and polyadenylation specificity factor S;	99.41
2dnl_A	114	Cytoplasmic polyadenylation element binding protei	99.41
2hzc_A	87	Splicing factor U2AF 65 kDa subunit; RNA splicing,	99.41
1nu4_A	97	U1A RNA binding domain; RNA recognition motif, U1	99.41
1x4f_A	112	Matrin 3; structural genomics, RRM domain, NPPSFA,	99.4
2jvo_A	108	Nucleolar protein 3; nucleus, phosphorylation, rib	99.4
2lea_A	135	Serine/arginine-rich splicing factor 2; SR protein	99.4
2e5j_A	97	Methenyltetrahydrofolate synthetase domain contain	99.4
1fjc_A	96	Nucleolin RBD2, protein C23; RNP, RRM, RNA binding	99.39
1fj7_A	101	Nucleolin RBD1, protein C23; RNP, RRM, RNA binding	99.39
2hgn_A	139	Heterogeneous nuclear ribonucleoprotein F; RNA rec	99.39
2e5g_A	94	U6 snRNA-specific terminal uridylyltransferase 1;	99.39
2cqh_A	93	IGF-II mRNA-binding protein 2 isoform A; RNA recog	99.38
3u1l_A	240	PRE-mRNA-splicing factor CWC2; CSMP, zinc finger;	99.38
1wg1_A	88	KIAA1579 protein, homolog EXC-7; RBD, structural g	99.37
2cpx_A	115	Hypothetical protein FLJ11016; RRM domain, structu	99.37
1x5p_A	97	Negative elongation factor E; structure genomics,	99.36
1wf0_A	88	TDP-43, TAR DNA-binding protein-43; structural gen	99.36
2f3j_A	177	RNA and export factor binding protein 2; RRM domai	99.36
1wf1_A	110	RNA-binding protein RALY; structural genomics, RRM	99.36
2dit_A	112	HIV TAT specific factor 1 variant; structural geno	99.36
2cq2_A	114	Hypothetical protein LOC91801; RRM domain, structu	99.35
2i2y_A	150	Fusion protein consists of immunoglobin G- binding	99.35
2voo_A	193	Lupus LA protein; RNA-binding protein, RNA recogni	99.35
1sjr_A	164	Polypyrimidine tract-binding protein 1; extended b	99.33
1jmt_A	104	Splicing factor U2AF 35 kDa subunit; RRM, RNA spli	99.33
2lcw_A	116	RNA-binding protein FUS; RRM, nucleic acid binding	99.01
2e44_A	96	Insulin-like growth factor 2 mRNA binding protein	99.33
3egn_A	143	RNA-binding protein 40; RNA recognition motif (RRM	99.32
2fc8_A	102	NCL protein; structure genomics, RRM_1 domain, str	99.31
3v4m_A	105	Splicing factor U2AF 65 kDa subunit; canonical RNA	99.31
3pgw_S	437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	99.3
3beg_B	115	Splicing factor, arginine/serine-rich 1; kinase, S	99.28
3zzy_A	130	Polypyrimidine tract-binding protein 1; protein bi	99.27
2e5i_A	124	Heterogeneous nuclear ribonucleoprotein L-like; RR	99.27
2j8a_A	136	Histone-lysine N-methyltransferase, H3 lysine-4 sp	99.25
2bz2_A	121	Negative elongation factor E; NELF E, RNA recognit	99.24
2pe8_A	105	Splicing factor 45; RRM, protein binding; 2.00A {H	99.24
3ue2_A	118	Poly(U)-binding-splicing factor PUF60; RNA recogni	99.23
3u1l_A	240	PRE-mRNA-splicing factor CWC2; CSMP, zinc finger;	99.22
2diu_A	96	KIAA0430 protein; structural genomics, RRM domain,	99.22
3tht_A	345	Alkylated DNA repair protein ALKB homolog 8; struc	99.2
2d9o_A	100	DNAJ (HSP40) homolog, subfamily C, member 17; RRM	99.19
3s6e_A	114	RNA-binding protein 39; ferredoxin-like, structura	99.14
3v4m_A	105	Splicing factor U2AF 65 kDa subunit; canonical RNA	99.1
2dit_A	112	HIV TAT specific factor 1 variant; structural geno	99.09
3tht_A	345	Alkylated DNA repair protein ALKB homolog 8; struc	99.03
3ue2_A	118	Poly(U)-binding-splicing factor PUF60; RNA recogni	98.97
1jmt_A	104	Splicing factor U2AF 35 kDa subunit; RRM, RNA spli	98.94
2dnr_A	91	Synaptojanin-1; RRM domain, RBD, structural genomi	98.93
2d9o_A	100	DNAJ (HSP40) homolog, subfamily C, member 17; RRM	98.89
1owx_A	121	Lupus LA protein, SS-B, LA; RRM, transcription; NM	98.79
3s6e_A	114	RNA-binding protein 39; ferredoxin-like, structura	98.78
1ufw_A	95	Synaptojanin 2; RNP domain, structural genomics, r	98.71
1owx_A	121	Lupus LA protein, SS-B, LA; RRM, transcription; NM	98.62
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	98.58
2dnr_A	91	Synaptojanin-1; RRM domain, RBD, structural genomi	98.22
2l9w_A	117	U4/U6 snRNA-associated-splicing factor PRP24; RRM,	98.13
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	98.05
1ufw_A	95	Synaptojanin 2; RNP domain, structural genomics, r	98.04
2dhx_A	104	Poly (ADP-ribose) polymerase family, member 10 var	97.49
2dhx_A	104	Poly (ADP-ribose) polymerase family, member 10 var	97.43
1wwh_A	119	Nucleoporin 35, nucleoporin; structural genomics,	97.2
1wey_A	104	Calcipressin 1; structural genomics, RRM domain, r	97.13
2l9w_A	117	U4/U6 snRNA-associated-splicing factor PRP24; RRM,	97.02
3p3d_A	132	Nucleoporin 53; structural genomics, PSI-2, protei	96.8
1uw4_A	91	UPF3X; nonsense mediated mRNA decay protein, RNA-b	96.5
1whv_A	100	Poly(A)-specific ribonuclease; RNA recognition mot	96.45
1uw4_A	91	UPF3X; nonsense mediated mRNA decay protein, RNA-b	96.33
3ctr_A	101	Poly(A)-specific ribonuclease PARN; protein-RNA-co	96.25
1wwh_A	119	Nucleoporin 35, nucleoporin; structural genomics,	96.14
3pq1_A	464	Poly(A) RNA polymerase; nucleotidyl transferase, R	95.76
1whv_A	100	Poly(A)-specific ribonuclease; RNA recognition mot	95.61
3ctr_A	101	Poly(A)-specific ribonuclease PARN; protein-RNA-co	95.31
3pq1_A	464	Poly(A) RNA polymerase; nucleotidyl transferase, R	95.23
1wey_A	104	Calcipressin 1; structural genomics, RRM domain, r	94.91
2l08_A	97	Regulator of nonsense transcripts 3A; NESG, nonsen	94.23
2l08_A	97	Regulator of nonsense transcripts 3A; NESG, nonsen	93.22
3p3d_A	132	Nucleoporin 53; structural genomics, PSI-2, protei	88.89

>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*

Probab=99.98  E-value=1.6e-31  Score=247.07  Aligned_cols=167  Identities=17%  Similarity=0.220  Sum_probs=137.8

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      ..+.+||||+|||+++|+++|+++|++||+|.+|+|. .  +..+++++|||||+|.+.++|+.|+..+|...+.+..+.
T Consensus        12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~-~--d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~   88 (213)
T 4f02_A           12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVC-R--DMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVR   88 (213)
T ss_dssp             ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEE-E--CTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred             CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEe-c--ccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccc
Confidence            4467899999999999999999999999999999994 3  335688999999999999999999976665555444433


Q ss_pred             eecCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccCc
Q psy14559         88 TPYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRR  167 (405)
Q Consensus        88 v~~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~r  167 (405)
                      +.+.......                                                                .....+
T Consensus        89 ~~~~~~~~~~----------------------------------------------------------------~~~~~~  104 (213)
T 4f02_A           89 IMWSQRDPSL----------------------------------------------------------------RKSGVG  104 (213)
T ss_dssp             EEECCCCTHH----------------------------------------------------------------HHHCTT
T ss_pred             cccccccccc----------------------------------------------------------------cccccc
Confidence            3322211000                                                                001146


Q ss_pred             EEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559        168 TLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST  241 (405)
Q Consensus       168 tvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~  241 (405)
                      +|||+|||+++|+++|+++|++||.|.+|+++.+.+.++|||||+|.+.++|.+|+. |||..|+|++|+|.+++
T Consensus       105 ~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~  179 (213)
T 4f02_A          105 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK  179 (213)
T ss_dssp             EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred             cceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence            899999999999999999999999999999988877789999999999999999998 99999999999999986

>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}

Probab=99.97  E-value=4.2e-30  Score=225.55  Aligned_cols=162  Identities=15%  Similarity=0.252  Sum_probs=132.7

Q ss_pred             cEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEeecC
Q psy14559         12 KVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTPYN   91 (405)
Q Consensus        12 ~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~~~   91 (405)
                      |+|||+|||+++|+++|+++|+.||+|.+|++.. +.   .++++|||||+|.+.++|..|+..+++..+++..+.+.+.
T Consensus         1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~-~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~   76 (166)
T 3md3_A            1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMI-DK---NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWA   76 (166)
T ss_dssp             CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEEC-CC---C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred             CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEE-CC---CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEc
Confidence            6899999999999999999999999999999943 32   3678999999999999999999554444444433333322


Q ss_pred             CCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccCcEEEE
Q psy14559         92 SGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRTLVA  171 (405)
Q Consensus        92 ~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~rtvfV  171 (405)
                      ....                                                                .......++|||
T Consensus        77 ~~~~----------------------------------------------------------------~~~~~~~~~l~v   92 (166)
T 3md3_A           77 FQSQ----------------------------------------------------------------QSSSDDTFNLFV   92 (166)
T ss_dssp             CCCC----------------------------------------------------------------CCCCTTCEEEEE
T ss_pred             CCCC----------------------------------------------------------------CCCCCCCceEEE
Confidence            2100                                                                000111679999


Q ss_pred             eCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559        172 INIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST  241 (405)
Q Consensus       172 ~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~  241 (405)
                      +|||+++++++|+++|++||.|.++.+..+  ++.++|||||+|.+.++|.+|+. |||..++|++|+|.+++
T Consensus        93 ~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~  165 (166)
T 3md3_A           93 GDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA  165 (166)
T ss_dssp             ESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred             CCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence            999999999999999999999999999755  67889999999999999999998 99999999999999975

>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A

Probab=99.97  E-value=7.8e-30  Score=230.66  Aligned_cols=171  Identities=15%  Similarity=0.230  Sum_probs=139.6

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      +...++|||+|||+++|+++|+++|+.||+|.+|++..   +..++.++|||||+|.+.++|..|+..++..+.++.+.+
T Consensus        10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~---~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v   86 (196)
T 1l3k_A           10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMR---DPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEP   86 (196)
T ss_dssp             CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE---CTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEE---cCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeee
Confidence            56789999999999999999999999999999999944   234678999999999999999999988665555555554


Q ss_pred             eecCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccCc
Q psy14559         88 TPYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRR  167 (405)
Q Consensus        88 v~~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~r  167 (405)
                      ..........                                         .+                    ......+
T Consensus        87 ~~~~~~~~~~-----------------------------------------~~--------------------~~~~~~~  105 (196)
T 1l3k_A           87 KRAVSREDSQ-----------------------------------------RP--------------------GAHLTVK  105 (196)
T ss_dssp             EECCC------------------------------------------------------------------------CCS
T ss_pred             ecccCccccc-----------------------------------------cc--------------------ccCCCcc
Confidence            4322110000                                         00                    0001157


Q ss_pred             EEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeeccC
Q psy14559        168 TLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       168 tvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~~  242 (405)
                      +|||+|||+++|+++|+++|++||.|.++.++.+  ++.++|||||+|.+.++|.+|+..+|..+.|+.|.|.++..
T Consensus       106 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~i~v~~a~~  182 (196)
T 1l3k_A          106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALS  182 (196)
T ss_dssp             EEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEEECC-
T ss_pred             eEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEECCEEEEEEecCC
Confidence            9999999999999999999999999999999765  67889999999999999999999889999999999999863

>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A

Probab=99.97  E-value=1.1e-29  Score=223.98  Aligned_cols=162  Identities=15%  Similarity=0.194  Sum_probs=134.5

Q ss_pred             CCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEee
Q psy14559         10 KTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTP   89 (405)
Q Consensus        10 ~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~   89 (405)
                      +.++|||+|||+++|+++|+++|+.||+|.+|++...   ..++.++|||||+|.+.++|+.|+..++...+++..+.+.
T Consensus         2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~---~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~   78 (168)
T 1b7f_A            2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRD---YKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVS   78 (168)
T ss_dssp             CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEE---TTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred             CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEe---CCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEE
Confidence            5789999999999999999999999999999999443   2467889999999999999999997544444444443333


Q ss_pred             cCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccCcEE
Q psy14559         90 YNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRTL  169 (405)
Q Consensus        90 ~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~rtv  169 (405)
                      +....                                                                  ......++|
T Consensus        79 ~~~~~------------------------------------------------------------------~~~~~~~~l   92 (168)
T 1b7f_A           79 YARPG------------------------------------------------------------------GESIKDTNL   92 (168)
T ss_dssp             ECCCC------------------------------------------------------------------SSTTTTCEE
T ss_pred             ecCCC------------------------------------------------------------------cccCCCCCE
Confidence            32210                                                                  000115799


Q ss_pred             EEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCC--eeEEEeec
Q psy14559        170 VAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKG--KTLQMFHS  240 (405)
Q Consensus       170 fV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g--~~i~V~~a  240 (405)
                      ||+|||+++++++|+++|++||.|.++.++.+  ++.++|||||+|.+.++|.+|+. |||..+.|  ++|+|.+|
T Consensus        93 ~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A  168 (168)
T 1b7f_A           93 YVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA  168 (168)
T ss_dssp             EEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred             EEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence            99999999999999999999999999999765  67789999999999999999999 99999988  99999875

>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C

Probab=99.97  E-value=4.5e-30  Score=226.42  Aligned_cols=161  Identities=14%  Similarity=0.246  Sum_probs=133.1

Q ss_pred             CCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEee
Q psy14559         10 KTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTP   89 (405)
Q Consensus        10 ~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~   89 (405)
                      +.++|||+|||+++|+++|+++|+.||+|.+|++. .  +..++.++|||||+|.+.++|..|+.. ...+.++.+ .+.
T Consensus         2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~-~--~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~i-~v~   76 (167)
T 2cjk_A            2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIM-K--DPATGRSRGFGFLSFEKPSSVDEVVKT-QHILDGKVI-DPK   76 (167)
T ss_dssp             GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECC-C--CTTTSSCCSCEEEEESSTHHHHHHHHS-CCEETTEEC-CCE
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-E--CCCCCCccceEEEEEccHHHHHHHHhc-ccccCCeEc-ccc
Confidence            57899999999999999999999999999999993 3  334688999999999999999999974 222222222 111


Q ss_pred             cCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccCcEE
Q psy14559         90 YNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRTL  169 (405)
Q Consensus        90 ~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~rtv  169 (405)
                      +...                                                                  .......++|
T Consensus        77 ~~~~------------------------------------------------------------------~~~~~~~~~l   90 (167)
T 2cjk_A           77 RAIP------------------------------------------------------------------RDEQDKTGKI   90 (167)
T ss_dssp             ECCC------------------------------------------------------------------HHHHHHCEEE
T ss_pred             cccc------------------------------------------------------------------hhhccCCCeE
Confidence            1110                                                                  0001125689


Q ss_pred             EEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeecc
Q psy14559        170 VAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHST  241 (405)
Q Consensus       170 fV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~  241 (405)
                      ||+|||+++++++|+++|++||.|.++.+..+  ++.++|||||+|.+.++|.+|++++|..++|++|+|.++.
T Consensus        91 ~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~V~~a~  164 (167)
T 2cjk_A           91 FVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAE  164 (167)
T ss_dssp             EEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSCEEEEECC
T ss_pred             EECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeEEEEeecC
Confidence            99999999999999999999999999999765  6789999999999999999999999999999999999986

>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A

Probab=99.97  E-value=4.5e-29  Score=229.07  Aligned_cols=175  Identities=12%  Similarity=0.183  Sum_probs=137.2

Q ss_pred             CCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhc-cCCccccceeEEe
Q psy14559         10 KTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHL-TNTVFIDRALVVT   88 (405)
Q Consensus        10 ~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~-~n~~~~~~~~~vv   88 (405)
                      ..++|||+|||+++|+++|+++|+.||+|.+|++..   +..++.++|||||+|.+.++|..|+.. ++..+.++.+.+ 
T Consensus        27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~---~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v-  102 (216)
T 2qfj_A           27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSW---DSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKV-  102 (216)
T ss_dssp             HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECC---C-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEE-
T ss_pred             cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEee---cCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEE-
Confidence            358999999999999999999999999999999943   234578899999999999999999984 444444544444 


Q ss_pred             ecCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccCcE
Q psy14559         89 PYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRT  168 (405)
Q Consensus        89 ~~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~rt  168 (405)
                      .+.............                                                       ........++
T Consensus       103 ~~~~~~~~~~~~~~~-------------------------------------------------------~~~~~~~~~~  127 (216)
T 2qfj_A          103 GRPSNIGQAQPIIDQ-------------------------------------------------------LAEEARAFNR  127 (216)
T ss_dssp             ECCSCCGGGHHHHHH-------------------------------------------------------HHHHHTTSCE
T ss_pred             ecCCCccccchhhhh-------------------------------------------------------hhcccCCCcE
Confidence            332221100000000                                                       0001112679


Q ss_pred             EEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCC
Q psy14559        169 LVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQS  243 (405)
Q Consensus       169 vfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~  243 (405)
                      |||+|||+++++++|+++|++||.|.++++..+  ++.++|||||+|.+.++|.+|+. |||..|+|+.|+|.++...
T Consensus       128 l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~  205 (216)
T 2qfj_A          128 IYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTP  205 (216)
T ss_dssp             EEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSC
T ss_pred             EEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCC
Confidence            999999999999999999999999999999765  67889999999999999999999 9999999999999999755

>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A

Probab=99.97  E-value=2.6e-29  Score=220.68  Aligned_cols=161  Identities=17%  Similarity=0.269  Sum_probs=132.6

Q ss_pred             CCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhc-cCCccccceeEEe
Q psy14559         10 KTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHL-TNTVFIDRALVVT   88 (405)
Q Consensus        10 ~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~-~n~~~~~~~~~vv   88 (405)
                      +.++|||+|||+++|+++|+++|+.||+|.++++...   ..+++++|||||+|.+.++|..|+.. ++..+.++.+.+ 
T Consensus         1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~---~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v-   76 (167)
T 1fxl_A            1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRD---KITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKV-   76 (167)
T ss_dssp             CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEC---TTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE-
T ss_pred             CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeC---CCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEE-
Confidence            3589999999999999999999999999999999543   34688999999999999999999975 444444444433 


Q ss_pred             ecCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccCcE
Q psy14559         89 PYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRT  168 (405)
Q Consensus        89 ~~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~rt  168 (405)
                      .+....                                                                  ......++
T Consensus        77 ~~~~~~------------------------------------------------------------------~~~~~~~~   90 (167)
T 1fxl_A           77 SYARPS------------------------------------------------------------------SASIRDAN   90 (167)
T ss_dssp             EECCCC------------------------------------------------------------------CGGGTTCE
T ss_pred             EecCCC------------------------------------------------------------------cccCCCCc
Confidence            322110                                                                  00011578


Q ss_pred             EEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCee--EEEeec
Q psy14559        169 LVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKT--LQMFHS  240 (405)
Q Consensus       169 vfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~--i~V~~a  240 (405)
                      |||+|||+++++++|+++|++||.|.++++..+  ++.++|||||+|.+.++|.+|+. |||..+.|+.  |+|.+|
T Consensus        91 l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A  167 (167)
T 1fxl_A           91 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA  167 (167)
T ss_dssp             EEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred             EEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence            999999999999999999999999999999765  67789999999999999999999 9999999975  787764

>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A

Probab=99.97  E-value=2e-29  Score=223.34  Aligned_cols=167  Identities=16%  Similarity=0.236  Sum_probs=129.8

Q ss_pred             CCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccC-CccccceeEEe
Q psy14559         10 KTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTN-TVFIDRALVVT   88 (405)
Q Consensus        10 ~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n-~~~~~~~~~vv   88 (405)
                      +.++|||+|||+++|+++|+++|+.||+|.+|++.. +.....++++|||||+|.+.++|+.|++.++ ..+.++....+
T Consensus         2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~-~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~   80 (175)
T 3nmr_A            2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLR-DRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPI   80 (175)
T ss_dssp             CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEE-ECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred             CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEe-cCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccce
Confidence            578999999999999999999999999999999943 3321122789999999999999999996444 33332211100


Q ss_pred             ecCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccCcE
Q psy14559         89 PYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRT  168 (405)
Q Consensus        89 ~~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~rt  168 (405)
                      ....                                             ..+                  ........++
T Consensus        81 ~~~~---------------------------------------------~~~------------------~~~~~~~~~~   97 (175)
T 3nmr_A           81 QMKP---------------------------------------------ADS------------------EKNNAVEDRK   97 (175)
T ss_dssp             EEEE---------------------------------------------CGG------------------GCCSCGGGSE
T ss_pred             EEcc---------------------------------------------ccc------------------cccccCCCCe
Confidence            0000                                             000                  0000112679


Q ss_pred             EEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHH-hCCceeC---CeeEEEeec
Q psy14559        169 LVAINIEESVSPQELVDFFQKVGTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALK-LNGTNLK---GKTLQMFHS  240 (405)
Q Consensus       169 vfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~-lng~~l~---g~~i~V~~a  240 (405)
                      |||+|||+++|+++|+++|++||.|.++.++.+ ++.++|||||+|.+.++|.+|+. |||..+.   |++|.|.++
T Consensus        98 l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~a  174 (175)
T 3nmr_A           98 LFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFA  174 (175)
T ss_dssp             EEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEEC
T ss_pred             EEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEec
Confidence            999999999999999999999999999999765 67789999999999999999998 9998776   499999986

>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A

Probab=99.96  E-value=9.6e-29  Score=218.91  Aligned_cols=157  Identities=15%  Similarity=0.233  Sum_probs=130.9

Q ss_pred             CCCcEEEEcCCCCCCCHHHHHHHhccC----C-------ceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccC
Q psy14559          9 VKTKVVQVANIAPQATRDQMQTLFGYL----G-------KVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTN   77 (405)
Q Consensus         9 ~~~~tLfVgNLp~~vTeedLr~lFs~~----G-------~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n   77 (405)
                      .+.++|||+|||+++|+++|+++|+.|    |       .|.++++         +.++|||||+|.+.++|..|+.+++
T Consensus         2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~---------~~~~g~afV~f~~~~~A~~A~~~~~   72 (172)
T 2g4b_A            2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI---------NQDKNFAFLEFRSVDETTQAMAFDG   72 (172)
T ss_dssp             CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEE---------ETTTTEEEEEESSHHHHHHHGGGTT
T ss_pred             CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEe---------cCCCCEEEEEeCCHHHHHHHHHhCC
Confidence            367999999999999999999999999    7       7888877         2358999999999999999996555


Q ss_pred             CccccceeEEeecCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCC
Q psy14559         78 TVFIDRALVVTPYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITY  157 (405)
Q Consensus        78 ~~~~~~~~~vv~~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~  157 (405)
                      ..+.++.+.+.. ....                                                               
T Consensus        73 ~~~~g~~i~v~~-~~~~---------------------------------------------------------------   88 (172)
T 2g4b_A           73 IIFQGQSLKIRR-PHDY---------------------------------------------------------------   88 (172)
T ss_dssp             CEETTEECEEEC-CSSC---------------------------------------------------------------
T ss_pred             cEecCceeeecC-Cccc---------------------------------------------------------------
Confidence            555555444322 1100                                                               


Q ss_pred             CCccccccCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCee
Q psy14559        158 DTKKIEEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKT  234 (405)
Q Consensus       158 ~~~~~~~~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~  234 (405)
                         ......++|||+|||+++++++|+++|++||.|.++.+..+  ++.++|||||+|.+.++|.+|+. |||..++|++
T Consensus        89 ---~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~  165 (172)
T 2g4b_A           89 ---QPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKK  165 (172)
T ss_dssp             ---CCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEE
T ss_pred             ---CCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeE
Confidence               00001578999999999999999999999999999999766  67889999999999999999998 9999999999


Q ss_pred             EEEeecc
Q psy14559        235 LQMFHST  241 (405)
Q Consensus       235 i~V~~a~  241 (405)
                      |.|.+|.
T Consensus       166 l~V~~As  172 (172)
T 2g4b_A          166 LLVQRAS  172 (172)
T ss_dssp             CEEEECC
T ss_pred             EEEEeCC
Confidence            9999863

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A

Probab=99.96  E-value=1.2e-28  Score=237.59  Aligned_cols=224  Identities=16%  Similarity=0.190  Sum_probs=162.3

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      ..+.++|||+|||+++|+++|+++|+.||+|.+|++... .    ..++|||||+|.+.++|..|+.+++..+.++.+.+
T Consensus        38 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~----~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v  112 (292)
T 2ghp_A           38 NRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADS-L----KKNFRFARIEFARYDGALAAITKTHKVVGQNEIIV  112 (292)
T ss_dssp             ----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEEC-T----TSSSEEEEEEESSHHHHHHHHTTTTCEETTEECEE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC-C----CCCcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEE
Confidence            567899999999999999999999999999999999543 2    22589999999999999999986555554544433


Q ss_pred             eecCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccCc
Q psy14559         88 TPYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRR  167 (405)
Q Consensus        88 v~~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~r  167 (405)
                      .. .                                                                         ..+
T Consensus       113 ~~-~-------------------------------------------------------------------------~~~  118 (292)
T 2ghp_A          113 SH-L-------------------------------------------------------------------------TEC  118 (292)
T ss_dssp             EE-C-------------------------------------------------------------------------CSC
T ss_pred             EE-C-------------------------------------------------------------------------CCC
Confidence            21 0                                                                         057


Q ss_pred             EEEEeCCCCCCCHHHHHHHHhcCC-CeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCCC
Q psy14559        168 TLVAINIEESVSPQELVDFFQKVG-TVNYIRFCTR-ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQSI  244 (405)
Q Consensus       168 tvfV~NLp~~~tee~L~~~F~~~G-~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~~  244 (405)
                      +|||+|||+++++++|+++|++|| .|.+|.++.+ .+.++|||||+|.+.++|..|+. |||..+.|++|.|.++... 
T Consensus       119 ~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~-  197 (292)
T 2ghp_A          119 TLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPL-  197 (292)
T ss_dssp             EEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC-
T ss_pred             EEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCC-
Confidence            999999999999999999999999 9999999765 56789999999999999999999 9999999999999987621 


Q ss_pred             CCCCCCChHHHHHHHHHHHHHHHHhhhhhhhccCcccCcccccccCCCCCceEEEEEEEeee-hhhHHHhhhCCCcceee
Q psy14559        245 QKPEAKSNEAAQREIEEAMSRVKEAQNMISAAIDPVIGILSKDKKKSHSPVRHLVIVLIVVD-VALDLALEIGDDLEVVV  323 (405)
Q Consensus       245 ~~p~~~~~~~~~~e~~~~~k~~~~~~~~~s~~~ep~~~~~~~dk~~~~s~~~~~~~~~~~~d-~~~~~al~~~~~~~~~~  323 (405)
                          ....    +.                              .........+.+..+..+ ..-+..       .-..
T Consensus       198 ----~~~~----~~------------------------------~~~~~~~~~l~v~nlp~~~~t~~~l-------~~~F  232 (292)
T 2ghp_A          198 ----EKSK----RT------------------------------DSATLEGREIMIRNLSTELLDENLL-------RESF  232 (292)
T ss_dssp             -----------------------------------------------CCTTTEEEEEEECTTTCCHHHH-------HHHH
T ss_pred             ----cccc----cc------------------------------cccCCCCceEEEECCCcccCCHHHH-------HHHH
Confidence                1110    00                              011234455666676666 442222       2233


Q ss_pred             eeeccccccccc------cccceEEEEEecCcccccccC
Q psy14559        324 RDVGHVREEDQD------HVVDVLCLVIVRDPHVARDVH  356 (405)
Q Consensus       324 ~~~g~v~~~~~~------~~~~~~~~~~~~~~~~~~~~~  356 (405)
                      ..+|.|..+.--      ...-|.|.|.|.+++.|...-
T Consensus       233 ~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~  271 (292)
T 2ghp_A          233 EGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL  271 (292)
T ss_dssp             GGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG
T ss_pred             hccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH
Confidence            455666653222      445689999999999998654

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E

Probab=99.96  E-value=6.4e-28  Score=231.52  Aligned_cols=221  Identities=11%  Similarity=0.155  Sum_probs=161.4

Q ss_pred             CCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEe
Q psy14559          9 VKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVT   88 (405)
Q Consensus         9 ~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv   88 (405)
                      .+.++|||+|||+++|+++|+++|+.|| |.+|++         ++++|||||+|.+.++|..|+...|+..+++..+.+
T Consensus        20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~---------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v   89 (284)
T 3smz_A           20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV---------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSV   89 (284)
T ss_dssp             HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE---------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE---------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEE
Confidence            3568999999999999999999999999 999988         345899999999999999999755444343333222


Q ss_pred             ecCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccCcE
Q psy14559         89 PYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRT  168 (405)
Q Consensus        89 ~~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~rt  168 (405)
                      .+..                                                                        ..++
T Consensus        90 ~~~~------------------------------------------------------------------------~~~~   97 (284)
T 3smz_A           90 QLQP------------------------------------------------------------------------TDAL   97 (284)
T ss_dssp             EECC------------------------------------------------------------------------CSCE
T ss_pred             EecC------------------------------------------------------------------------CCCE
Confidence            2100                                                                        0568


Q ss_pred             EEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCCCC
Q psy14559        169 LVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQSIQ  245 (405)
Q Consensus       169 vfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~~~  245 (405)
                      |||+|||+++|+++|+++|++||.|.++.++.+  +|.++|||||+|.+.++|..|+. |||..+.|++|.|.++.....
T Consensus        98 l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~  177 (284)
T 3smz_A           98 LCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQL  177 (284)
T ss_dssp             EEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGC
T ss_pred             EEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCC
Confidence            999999999999999999999999999998755  67889999999999999999997 999999999999999864422


Q ss_pred             CCCCC----------ChH-HHHHHHHHHHHHHHHhhhhhhhccCcccCcccccccCCCCCceEEEEEEEeeehhhHHHhh
Q psy14559        246 KPEAK----------SNE-AAQREIEEAMSRVKEAQNMISAAIDPVIGILSKDKKKSHSPVRHLVIVLIVVDVALDLALE  314 (405)
Q Consensus       246 ~p~~~----------~~~-~~~~e~~~~~k~~~~~~~~~s~~~ep~~~~~~~dk~~~~s~~~~~~~~~~~~d~~~~~al~  314 (405)
                      .+...          +.. ....++.+.          ++.-.......+..+. .+  ...|++++.|.....+++|++
T Consensus       178 ~~~~~~~~~l~v~nlp~~~~~~~~l~~~----------f~~~G~i~~v~i~~~~-~g--~~~g~afV~f~~~~~A~~A~~  244 (284)
T 3smz_A          178 TPALLHSRCLCVDRLPPGFNDVDALCRA----------LSAVHSPTFCQLACGQ-DG--QLKGFAVLEYETAEMAEEAQQ  244 (284)
T ss_dssp             CTTTTSCSEEEEECCCTTCCCHHHHHHH----------TCSSSCCSEEEEEECS-SC--CEEEEEEEECSSHHHHHHHHH
T ss_pred             CcccCCccEEEEecCCcccCCHHHHHHH----------hhCCCCeEEEEEEECC-CC--CcccEEEEEeCCHHHHHHHHH
Confidence            21110          111 122333222          2211111111223332 23  345677777777788899999


Q ss_pred             hCCCcceeee
Q psy14559        315 IGDDLEVVVR  324 (405)
Q Consensus       315 ~~~~~~~~~~  324 (405)
                      ..++..+.++
T Consensus       245 ~l~g~~~~g~  254 (284)
T 3smz_A          245 QADGLSLGGS  254 (284)
T ss_dssp             HHTTCEETTE
T ss_pred             HhCCCccCCe
Confidence            8887777554

>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A

Probab=99.96  E-value=1.2e-27  Score=216.56  Aligned_cols=178  Identities=16%  Similarity=0.246  Sum_probs=133.1

Q ss_pred             CCCcEEEEcCCCCCCCHHHHHHHhccC----C-------ceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccC
Q psy14559          9 VKTKVVQVANIAPQATRDQMQTLFGYL----G-------KVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTN   77 (405)
Q Consensus         9 ~~~~tLfVgNLp~~vTeedLr~lFs~~----G-------~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n   77 (405)
                      ...++|||+|||+++|+++|+++|+.|    |       .|.++.+         +.++|||||+|.+.++|+.|+.+++
T Consensus         2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~---------~~~~g~afV~F~~~~~A~~Al~l~g   72 (198)
T 2yh0_A            2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI---------NQDKNFAFLEFRSVDETTQAMAFDG   72 (198)
T ss_dssp             --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE---------ETTTTEEEEEESCSHHHHHHGGGTT
T ss_pred             CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe---------cCCCCEEEEEeCCHHHHHHHHHhcC
Confidence            357999999999999999999999999    5       6677666         3468999999999999999996555


Q ss_pred             CccccceeEEeecCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCC
Q psy14559         78 TVFIDRALVVTPYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITY  157 (405)
Q Consensus        78 ~~~~~~~~~vv~~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~  157 (405)
                      ..+.++.+.+ .+.....+..               +....+                        ....+.       .
T Consensus        73 ~~~~g~~i~v-~~~~~~~~~~---------------~~~~~~------------------------~~~~~~-------~  105 (198)
T 2yh0_A           73 IIFQGQSLKI-RRPHDYQPLP---------------GMSENP------------------------SVYVPG-------V  105 (198)
T ss_dssp             EEETTEEEEE-ECCCCCCCCC---------------CSSSCS------------------------SCCCTT-------S
T ss_pred             CEEcCceEEE-eCCCCCCCCC---------------CCcCCC------------------------cCCCCC-------C
Confidence            5555554444 4333210000               000000                        000000       0


Q ss_pred             CCccccccCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCee
Q psy14559        158 DTKKIEEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKT  234 (405)
Q Consensus       158 ~~~~~~~~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~  234 (405)
                      .........++|||+|||+++++++|+++|++||.|.++.+..+  ++.++|||||+|.+.++|.+|+. |||..++|+.
T Consensus       106 ~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~  185 (198)
T 2yh0_A          106 VSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKK  185 (198)
T ss_dssp             SCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEE
T ss_pred             ccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence            00111123689999999999999999999999999999999766  67889999999999999999999 9999999999


Q ss_pred             EEEeeccC
Q psy14559        235 LQMFHSTQ  242 (405)
Q Consensus       235 i~V~~a~~  242 (405)
                      |+|.+++.
T Consensus       186 l~v~~a~~  193 (198)
T 2yh0_A          186 LLVQRASV  193 (198)
T ss_dssp             CEEEESCC
T ss_pred             EEEEECCC
Confidence            99999873

>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A

Probab=99.96  E-value=5.2e-27  Score=224.92  Aligned_cols=229  Identities=15%  Similarity=0.231  Sum_probs=139.1

Q ss_pred             cccCCCCCcEEEEcCCCCCCCHHHHH----HHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCc
Q psy14559          4 DTVAPVKTKVVQVANIAPQATRDQMQ----TLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTV   79 (405)
Q Consensus         4 ~~~~~~~~~tLfVgNLp~~vTeedLr----~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~   79 (405)
                      .+....++++|||+|||+++|+++|+    ++|+.||.|.+|++..      +++++|||||+|.+.++|..|++.+|+.
T Consensus         2 ~~~~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~------~~~~~g~afV~f~~~~~a~~A~~~l~g~   75 (282)
T 3pgw_A            2 AVPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR------SLKMRGQAFVIFKEVSSATNALRSMQGF   75 (282)
T ss_pred             CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC------CCCcceEEEEEECCHHHHHHHHHHhcCC
Confidence            34456789999999999999999977    8999999999999832      4678999999999999999999655555


Q ss_pred             cccceeEEeecCCCCCc----------hHHHHH-------------HHHhccC------CCCCCC-CCCCCccccc----
Q psy14559         80 FIDRALVVTPYNSGEIP----------DEQRAL-------------EIAAQQQ------GPNSGE-PKLPAHVTNQ----  125 (405)
Q Consensus        80 ~~~~~~~vv~~~~~~~~----------~e~ka~-------------~l~~~~~------g~~~~~-~~~~~~~~~~----  125 (405)
                      .+++..+.+.+......          ...+..             .......      +..++. ...++.....    
T Consensus        76 ~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (282)
T 3pgw_A           76 PFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMH  155 (282)
T ss_pred             eeCCcEEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccc
Confidence            44444444444332110          000000             0000000      000000 0000000000    


Q ss_pred             -ccCCCCCcccccC--CcccccC-----CCCCCCCCCCC---CCCccccccCcEEEEeCCCCCCCHHHHHHHHhcCCCee
Q psy14559        126 -IEGVPPNQVISTH--DPVLVQH-----GLPQYPPLPIT---YDTKKIEEIRRTLVAINIEESVSPQELVDFFQKVGTVN  194 (405)
Q Consensus       126 -~~~~~~~~~~~~~--dp~~~~~-----~~~~~p~~~~~---~~~~~~~~~~rtvfV~NLp~~~tee~L~~~F~~~G~I~  194 (405)
                       ..+..........  .+.....     ........+..   ..........++|||+|||+++++++|+++|++||.|.
T Consensus       156 ~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~  235 (282)
T 3pgw_A          156 HMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFK  235 (282)
T ss_pred             cCCCCCCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeE
Confidence             0000000000000  0000000     00000000000   00111222368999999999999999999999999999


Q ss_pred             EEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeC-CeeEEEeecc
Q psy14559        195 YIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLK-GKTLQMFHST  241 (405)
Q Consensus       195 ~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~-g~~i~V~~a~  241 (405)
                      +|++..+   .+|||||+|.+.++|.+|+. |||..+. |+.|+|.+++
T Consensus       236 ~v~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak  281 (282)
T 3pgw_A          236 EVRLVPG---RHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK  281 (282)
T ss_pred             EEEEecC---CCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence            9999743   26899999999999999999 9999999 9999999986

>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A

Probab=99.96  E-value=7.4e-29  Score=220.72  Aligned_cols=164  Identities=18%  Similarity=0.297  Sum_probs=133.9

Q ss_pred             cCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCcccccee
Q psy14559          6 VAPVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRAL   85 (405)
Q Consensus         6 ~~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~   85 (405)
                      ..+.+.++|||+|||+++|+++|+++|+.||.+..+.+ .   +..++.++|||||+|.+.++|..|+++++..+.++.+
T Consensus         8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~-~---~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l   83 (175)
T 1fje_B            8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAV-V---DVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEI   83 (175)
T ss_dssp             SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCC-C---EEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEE
T ss_pred             CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEE-E---ECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEE
Confidence            45778999999999999999999999999998877333 1   2235778999999999999999999866655555555


Q ss_pred             EEeecCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCcccccc
Q psy14559         86 VVTPYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEI  165 (405)
Q Consensus        86 ~vv~~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~  165 (405)
                      .+.. .....                                                                ......
T Consensus        84 ~v~~-~~~~~----------------------------------------------------------------~~~~~~   98 (175)
T 1fje_B           84 KLEK-PKGRD----------------------------------------------------------------SKKVRA   98 (175)
T ss_dssp             EEEC-CCCSS----------------------------------------------------------------CSTTGG
T ss_pred             EEec-CCCcc----------------------------------------------------------------cccccc
Confidence            4432 22100                                                                000112


Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST  241 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~  241 (405)
                      .++|||+|||+++++++|+++|++||.|..+   ..++.++|||||+|.+.++|.+|+. |||..+.|++|+|.+++
T Consensus        99 ~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~---~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~  172 (175)
T 1fje_B           99 ARTLLAKNLSFNITEDELKEVFEDALEIRLV---SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG  172 (175)
T ss_dssp             GGEEEEESCCSSCCHHHHHHHCTTCSEEEEE---CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECS
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe---cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecC
Confidence            6799999999999999999999999988777   5578899999999999999999999 99999999999999986

>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A

Probab=99.95  E-value=8.8e-27  Score=217.63  Aligned_cols=199  Identities=21%  Similarity=0.308  Sum_probs=137.7

Q ss_pred             CcccccCCCCCcEEEEcCCCC-CCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHh-ccCC
Q psy14559          1 MAVDTVAPVKTKVVQVANIAP-QATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQH-LTNT   78 (405)
Q Consensus         1 ~~~~~~~~~~~~tLfVgNLp~-~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~-~~n~   78 (405)
                      |+....+.+++++|||+|||+ ++|+++|+++|+.||.|.+|++. .+       .+|||||+|.+.++|+.|+. +++.
T Consensus        24 ~~~p~~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~-~~-------~~g~afV~F~~~~~A~~Ai~~l~g~   95 (229)
T 2adc_A           24 IAIPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKIL-FN-------KKENALVQMADGNQAQLAMSHLNGH   95 (229)
T ss_dssp             CCCGGGGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEEC-CT-------TSCCEEEEESCHHHHHHHHHHHTTC
T ss_pred             cCCCCCCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEE-EC-------CCCEEEEEECCHHHHHHHHHHhCCC
Confidence            344555677889999999999 99999999999999999999993 22       27899999999999999997 5555


Q ss_pred             ccccceeEEeecCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCC
Q psy14559         79 VFIDRALVVTPYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYD  158 (405)
Q Consensus        79 ~~~~~~~~vv~~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~  158 (405)
                      .+.++.+.+...........        ..     +.....  ..........   .....+.              ...
T Consensus        96 ~~~g~~l~v~~a~~~~~~~~--------~~-----~~~~~~--~~~~~~~~~~---~~~~~~~--------------~~~  143 (229)
T 2adc_A           96 KLHGKPIRITLSKHQNVQLP--------RE-----GQEDQG--LTKDYGNSPL---HRFKKPG--------------SKN  143 (229)
T ss_dssp             BCSSSBCEEECCSCCCCCCC--------CS-----SSSTTT--TEEECTTCSS---CCCCSTT--------------SGG
T ss_pred             eECCeEEEEEEecCccccCc--------cc-----cccccc--cccccccCcc---cccCCcc--------------ccc
Confidence            55555554433222110000        00     000000  0000000000   0000000              000


Q ss_pred             CccccccCcEEEEeCCCCCCCHHHHHHHHhcCC-CeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeC-CeeE
Q psy14559        159 TKKIEEIRRTLVAINIEESVSPQELVDFFQKVG-TVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLK-GKTL  235 (405)
Q Consensus       159 ~~~~~~~~rtvfV~NLp~~~tee~L~~~F~~~G-~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~-g~~i  235 (405)
                      ........++|||+|||+++++++|+++|++|| .|.++++..   ..+|||||+|.+.++|.+|+. |||..+. |++|
T Consensus       144 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~---~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l  220 (229)
T 2adc_A          144 FQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ---KDRKMALIQMGSVEEAVQALIDLHNHDLGENHHL  220 (229)
T ss_dssp             GTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECS---SSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred             cccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEE---CCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeE
Confidence            001112268999999999999999999999999 999999953   247899999999999999999 9999999 9999


Q ss_pred             EEeeccC
Q psy14559        236 QMFHSTQ  242 (405)
Q Consensus       236 ~V~~a~~  242 (405)
                      +|.+++.
T Consensus       221 ~v~~a~~  227 (229)
T 2adc_A          221 RVSFSKS  227 (229)
T ss_dssp             EEEECSS
T ss_pred             EEEEecC
Confidence            9999874

>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A

Probab=99.95  E-value=4.5e-27  Score=216.72  Aligned_cols=190  Identities=15%  Similarity=0.229  Sum_probs=131.0

Q ss_pred             CCCcEEEEcCCC-CCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHh-ccCCccccceeE
Q psy14559          9 VKTKVVQVANIA-PQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQH-LTNTVFIDRALV   86 (405)
Q Consensus         9 ~~~~tLfVgNLp-~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~-~~n~~~~~~~~~   86 (405)
                      ++.++|||+||| +.+|+++|+++|+.||.|.+|++ +.+       .+|||||+|.+.++|+.|++ +++..+.++.+.
T Consensus         2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i-~~~-------~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~   73 (205)
T 3tyt_A            2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKF-MKS-------KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMN   73 (205)
T ss_dssp             CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEE-CTT-------STTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred             CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEE-ecC-------CCCEEEEEECCHHHHHHHHHHhCCCEECCceEE
Confidence            467899999999 79999999999999999999999 321       37999999999999999997 555555565555


Q ss_pred             EeecCCCCC-chHHHHHHHHhccCCCCCCCCCCCCccc--ccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCcccc
Q psy14559         87 VTPYNSGEI-PDEQRALEIAAQQQGPNSGEPKLPAHVT--NQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIE  163 (405)
Q Consensus        87 vv~~~~~~~-~~e~ka~~l~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~  163 (405)
                      |........ +...                ...+....  ....+.+   ......+....              .....
T Consensus        74 v~~s~~~~~~p~~~----------------~~~~~~~~~~~~~~~~~---~~r~~~~~~~~--------------~~~~~  120 (205)
T 3tyt_A           74 VCVSKQPAIMPGQS----------------YGLEDGSCSYKDFSESR---NNRFSTPEQAA--------------KNRIQ  120 (205)
T ss_dssp             EEECSCSCCCCCSC----------------CBCTTSCBSEEECTTCT---TCSCSSHHHHT--------------TSCCC
T ss_pred             EEEccCCccCCCcc----------------cccccCCccccccCCCc---cccccCccccc--------------ccccC
Confidence            443222110 0000                00000000  0000000   00000000000              00011


Q ss_pred             ccCcEEEEeCCCCCCCHHHHHHHHhcCCCe--eEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCe----eEE
Q psy14559        164 EIRRTLVAINIEESVSPQELVDFFQKVGTV--NYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGK----TLQ  236 (405)
Q Consensus       164 ~~~rtvfV~NLp~~~tee~L~~~F~~~G~I--~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~----~i~  236 (405)
                      ...++|||+|||+++|+++|+++|++||.|  .++++..+.+.++|||||+|.+.++|.+|+. |||..|.|+    ++.
T Consensus       121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~  200 (205)
T 3tyt_A          121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYT  200 (205)
T ss_dssp             CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEE
T ss_pred             CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceE
Confidence            226799999999999999999999999999  8999877666677999999999999999998 999999987    455


Q ss_pred             Eee
Q psy14559        237 MFH  239 (405)
Q Consensus       237 V~~  239 (405)
                      |++
T Consensus       201 vk~  203 (205)
T 3tyt_A          201 LKL  203 (205)
T ss_dssp             CEE
T ss_pred             EEe
Confidence            554

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E

Probab=99.94  E-value=2.1e-26  Score=220.95  Aligned_cols=167  Identities=13%  Similarity=0.176  Sum_probs=137.5

Q ss_pred             CCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEe
Q psy14559          9 VKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVT   88 (405)
Q Consensus         9 ~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv   88 (405)
                      ...++|||+|||+++|+++|+++|+.||.|.++++..   +..++.++|||||+|.+.++|..|+..+++..+++..+.+
T Consensus        93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~---~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v  169 (284)
T 3smz_A           93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVY---SERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYV  169 (284)
T ss_dssp             CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE---CTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred             CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEe---eCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence            4568999999999999999999999999999999843   2346889999999999999999999554444444444444


Q ss_pred             ecCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccCcE
Q psy14559         89 PYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRT  168 (405)
Q Consensus        89 ~~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~rt  168 (405)
                      .+....             .                             .                     .......++
T Consensus       170 ~~a~~~-------------~-----------------------------~---------------------~~~~~~~~~  186 (284)
T 3smz_A          170 HWTDAG-------------Q-----------------------------L---------------------TPALLHSRC  186 (284)
T ss_dssp             EECCGG-------------G-----------------------------C---------------------CTTTTSCSE
T ss_pred             EECCCC-------------C-----------------------------C---------------------CcccCCccE
Confidence            433210             0                             0                     000011679


Q ss_pred             EEEeCCCCCC-CHHHHHHHHhcCCCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559        169 LVAINIEESV-SPQELVDFFQKVGTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST  241 (405)
Q Consensus       169 vfV~NLp~~~-tee~L~~~F~~~G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~  241 (405)
                      |||+|||+++ ++++|+++|+.||.|.++.++.+ +|.++|||||+|.+.++|.+|+. |||..+.|++|+|.++.
T Consensus       187 l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~  262 (284)
T 3smz_A          187 LCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCA  262 (284)
T ss_dssp             EEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred             EEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEec
Confidence            9999999995 99999999999999999999765 77889999999999999999999 99999999999999986

>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B

Probab=99.94  E-value=1.4e-26  Score=220.56  Aligned_cols=155  Identities=15%  Similarity=0.193  Sum_probs=129.1

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      ....++|||+|||+++|+++|+++|+.||.|.+|++ .        +++|||||+|.+.++|..|+...|+..+++..+.
T Consensus        19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i-~--------~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~   89 (261)
T 3sde_A           19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFI-N--------RDRGFGFIRLESRTLAEIAKAELDGTILKSRPLR   89 (261)
T ss_dssp             SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEE-E--------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred             CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEE-e--------CCCcEEEEEECCHHHHHHHHHHcCCcEECCceeE
Confidence            455689999999999999999999999999999999 2        2489999999999999999975444444433333


Q ss_pred             eecCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccCc
Q psy14559         88 TPYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRR  167 (405)
Q Consensus        88 v~~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~r  167 (405)
                      +.+..                                                                        ..+
T Consensus        90 v~~a~------------------------------------------------------------------------~~~   97 (261)
T 3sde_A           90 IRFAT------------------------------------------------------------------------HGA   97 (261)
T ss_dssp             EEECC------------------------------------------------------------------------CSS
T ss_pred             eeecc------------------------------------------------------------------------cCC
Confidence            32211                                                                        046


Q ss_pred             EEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHH-h-CCceeC---CeeEEEeecc
Q psy14559        168 TLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALK-L-NGTNLK---GKTLQMFHST  241 (405)
Q Consensus       168 tvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~-l-ng~~l~---g~~i~V~~a~  241 (405)
                      +|||+|||+.+|+++|+++|++||.|.+|.++.+ +|.++|||||+|.+.++|.+|+. | +|..+.   |++|.|.++.
T Consensus        98 ~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~  177 (261)
T 3sde_A           98 ALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPME  177 (261)
T ss_dssp             EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECC
T ss_pred             cccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeecc
Confidence            8999999999999999999999999999999765 77889999999999999999998 8 555555   9999999885


Q ss_pred             CC
Q psy14559        242 QS  243 (405)
Q Consensus       242 ~~  243 (405)
                      ..
T Consensus       178 ~~  179 (261)
T 3sde_A          178 QF  179 (261)
T ss_dssp             CE
T ss_pred             cc
Confidence            43

>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1

Probab=99.94  E-value=3.6e-26  Score=207.69  Aligned_cols=188  Identities=22%  Similarity=0.308  Sum_probs=131.8

Q ss_pred             CCcEEEEcCCCC-CCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHh-ccCCccccceeEE
Q psy14559         10 KTKVVQVANIAP-QATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQH-LTNTVFIDRALVV   87 (405)
Q Consensus        10 ~~~tLfVgNLp~-~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~-~~n~~~~~~~~~v   87 (405)
                      ..++|||+|||+ ++|+++|+++|+.||.|.+|++ ..+       .+|||||+|.+.++|+.|+. +++..+.++.+.+
T Consensus         2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i-~~~-------~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v   73 (198)
T 1qm9_A            2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKI-LFN-------KKENALVQMADGNQAQLAMSHLNGHKLHGKPIRI   73 (198)
T ss_dssp             CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEEC-STT-------CSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEE
T ss_pred             CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE-EeC-------CCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEE
Confidence            368999999999 9999999999999999999999 322       27899999999999999997 5555555555544


Q ss_pred             eecCCCC--CchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCcccccc
Q psy14559         88 TPYNSGE--IPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEI  165 (405)
Q Consensus        88 v~~~~~~--~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~  165 (405)
                      .......  .+..         .        ...........+.+.   .....+..              .........
T Consensus        74 ~~a~~~~~~~~~~---------~--------~~~~~~~~~~~~~~~---~r~~~~~~--------------~~~~~~~~~  119 (198)
T 1qm9_A           74 TLSKHQNVQLPRE---------G--------QEDQGLTKDYGNSPL---HRFKKPGS--------------KNFQNIFPP  119 (198)
T ss_dssp             EECCCCSCCCSSS---------S--------SSSSSCEEESSCCCT---TSSSSCCC--------------CCCSCCCCC
T ss_pred             EEecCCCcCCCCc---------C--------CccccccccccCCch---hhccCccc--------------cccccCCCC
Confidence            4322211  0000         0        000000000000000   00000000              000011122


Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCC-CeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeC-CeeEEEeeccC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVG-TVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLK-GKTLQMFHSTQ  242 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G-~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~-g~~i~V~~a~~  242 (405)
                      .++|||+|||+++++++|+++|++|| .|.++++..+   .+|||||+|.+.++|.+|+. |||..+. |++|+|.+++.
T Consensus       120 ~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~  196 (198)
T 1qm9_A          120 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK---DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS  196 (198)
T ss_dssp             CCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST---TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECC
T ss_pred             ccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC---CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeecc
Confidence            68999999999999999999999999 9999999542   47999999999999999999 9999999 99999999874

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A

Probab=99.94  E-value=4.1e-26  Score=219.73  Aligned_cols=171  Identities=16%  Similarity=0.226  Sum_probs=133.2

Q ss_pred             CCCcEEEEcCCCCCCCHHHHHHHhccCC-ceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559          9 VKTKVVQVANIAPQATRDQMQTLFGYLG-KVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus         9 ~~~~tLfVgNLp~~vTeedLr~lFs~~G-~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      ...++|||+|||+.+|+++|+++|+.|| .|.+|++ +.+.   .+.++|||||+|.+.++|..|+..+++..+++..+.
T Consensus       115 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i-~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~  190 (292)
T 2ghp_A          115 LTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRL-PSLR---FNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLV  190 (292)
T ss_dssp             CCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEEC-C----------CCEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEE-EeCC---CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence            3578999999999999999999999999 9999999 4332   267899999999999999999985444444444444


Q ss_pred             eecCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccCc
Q psy14559         88 TPYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRR  167 (405)
Q Consensus        88 v~~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~r  167 (405)
                      +.+.........                                            .               .......+
T Consensus       191 v~~a~~~~~~~~--------------------------------------------~---------------~~~~~~~~  211 (292)
T 2ghp_A          191 TKVSNPLEKSKR--------------------------------------------T---------------DSATLEGR  211 (292)
T ss_dssp             EEECCCC--------------------------------------------------------------------CCTTT
T ss_pred             EEECCCCccccc--------------------------------------------c---------------cccCCCCc
Confidence            444332100000                                            0               00011267


Q ss_pred             EEEEeCCCCC-CCHHHHHHHHhcCCCeeEEEEecc-C--CCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeeccC
Q psy14559        168 TLVAINIEES-VSPQELVDFFQKVGTVNYIRFCTR-E--NDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       168 tvfV~NLp~~-~tee~L~~~F~~~G~I~~i~i~~~-~--~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~~  242 (405)
                      +|||+|||++ +++++|+++|++||.|.+|+++.+ .  +.++|||||+|.+.++|.+|+.|||..|+|++|.|.+++.
T Consensus       212 ~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~~l~g~~~~g~~i~V~~a~~  290 (292)
T 2ghp_A          212 EIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERALQMNRSLLGNREISVSLADK  290 (292)
T ss_dssp             EEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHGGGTTEEETTEEEEEEECCC
T ss_pred             eEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHHHhcCCEECCcEEEEEEecC
Confidence            9999999999 999999999999999999999766 3  7899999999999999999999999999999999999873

>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}

Probab=99.81  E-value=2e-19  Score=157.93  Aligned_cols=78  Identities=23%  Similarity=0.371  Sum_probs=73.8

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~  242 (405)
                      .++|||+|||+++++++|+++|++||.|.+|+++.+  ++.++|||||+|.+.++|..|+. |||..+.|++|+|.+++.
T Consensus        70 ~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~  149 (158)
T 2kn4_A           70 MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARY  149 (158)
T ss_dssp             CCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence            679999999999999999999999999999999765  78899999999999999999998 999999999999999975


Q ss_pred             C
Q psy14559        243 S  243 (405)
Q Consensus       243 ~  243 (405)
                      .
T Consensus       150 ~  150 (158)
T 2kn4_A          150 G  150 (158)
T ss_dssp             S
T ss_pred             C
Confidence            4

>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}

Probab=99.78  E-value=1.1e-18  Score=142.18  Aligned_cols=76  Identities=20%  Similarity=0.366  Sum_probs=72.3

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST  241 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~  241 (405)
                      +++|||+|||+++|+++|+++|++||+|.+|+++.+  +|.++|||||+|.+.++|.+|+. |||..+.|++|+|++|+
T Consensus        19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak   97 (99)
T 4fxv_A           19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR   97 (99)
T ss_dssp             CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence            678999999999999999999999999999999765  67899999999999999999998 99999999999999986

>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A

Probab=99.76  E-value=1.4e-18  Score=145.12  Aligned_cols=78  Identities=10%  Similarity=0.180  Sum_probs=61.2

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      |..+.+|||+|||+++|+++|+++|+.||+|.+|+|. .+.    +.++|||||+|.+.++|+.|+..++...+++..+.
T Consensus         2 P~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~-~d~----~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~   76 (115)
T 4f25_A            2 PLGSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV-CDE----NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVF   76 (115)
T ss_dssp             ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEE-EET----TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred             CCCCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEe-ecC----CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence            4457789999999999999999999999999999994 333    45799999999999999999975554444444444


Q ss_pred             eec
Q psy14559         88 TPY   90 (405)
Q Consensus        88 v~~   90 (405)
                      +.+
T Consensus        77 V~~   79 (115)
T 4f25_A           77 VGR   79 (115)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A

Probab=99.75  E-value=4.7e-18  Score=148.15  Aligned_cols=136  Identities=15%  Similarity=0.100  Sum_probs=101.3

Q ss_pred             CccccEEEEEecchhhHHHHHhcc-CCccccceeEEeecCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCC
Q psy14559         53 PVQSRICYVKFFDEKCVGISQHLT-NTVFIDRALVVTPYNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPP  131 (405)
Q Consensus        53 ~~~~g~aFV~F~~~e~A~~Al~~~-n~~~~~~~~~vv~~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~  131 (405)
                      ...+|+++|+|.+.++|+.|+..+ |...+++ .+.+.+........         .      .                
T Consensus        10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~---------~------~----------------   57 (150)
T 2i2y_A           10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVT---------E------G----------------   57 (150)
T ss_dssp             SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEE---------C------S----------------
T ss_pred             ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccc---------c------c----------------
Confidence            356899999999999999999765 6666766 44444333210000         0      0                


Q ss_pred             CcccccCCcccccCCCCCCCCCCCCCCCccccccCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEE
Q psy14559        132 NQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALV  211 (405)
Q Consensus       132 ~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV  211 (405)
                           ....   .           ...........++|||+|||+++|+++|+++|++||.|.+|+++.+   ++|||||
T Consensus        58 -----~~~~---~-----------~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~---~~g~afV  115 (150)
T 2i2y_A           58 -----SHHH---H-----------HHMHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN---PPGFAFV  115 (150)
T ss_dssp             -----SSSC---C-----------CCSCSSSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS---SCSEEEE
T ss_pred             -----cccc---c-----------ccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC---CCcEEEE
Confidence                 0000   0           0000011122689999999999999999999999999999999654   6899999


Q ss_pred             EECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559        212 EFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       212 ~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~  242 (405)
                      +|.+.++|..|+. |||..+.|++|+|.+++.
T Consensus       116 ~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~  147 (150)
T 2i2y_A          116 EFEDPRDAADAVRELDGRTLCGCRVRVELSNG  147 (150)
T ss_dssp             EESSHHHHHHHHHHHSSSCSSSSCCEEEECCC
T ss_pred             EECCHHHHHHHHHHcCCCEECCeEEEEEEcCC
Confidence            9999999999998 999999999999999863

>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A

Probab=99.74  E-value=8.2e-18  Score=140.39  Aligned_cols=77  Identities=21%  Similarity=0.355  Sum_probs=72.9

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~  242 (405)
                      ..+|||+|||+++|+++|+++|++||.|.+|+|+.+.+.++|||||+|.+.++|++|+. |||..|.|++|+|.++..
T Consensus         5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~   82 (115)
T 4f25_A            5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS   82 (115)
T ss_dssp             CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred             CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence            46899999999999999999999999999999988877789999999999999999998 999999999999999864

>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}

Probab=99.73  E-value=1.2e-17  Score=138.52  Aligned_cols=76  Identities=17%  Similarity=0.195  Sum_probs=72.4

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST  241 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~  241 (405)
                      .++|||+|||+++++++|+++|++||.|.+|.++.+  +++++|||||+|.+.++|.+|+. |||..+.|+.|+|.++.
T Consensus         6 ~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~   84 (110)
T 3s8s_A            6 LKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI   84 (110)
T ss_dssp             CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred             CcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence            689999999999999999999999999999999866  57899999999999999999998 99999999999999975

>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.72  E-value=1.4e-17  Score=137.71  Aligned_cols=80  Identities=20%  Similarity=0.325  Sum_probs=74.6

Q ss_pred             cccCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559        163 EEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST  241 (405)
Q Consensus       163 ~~~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~  241 (405)
                      ....++|||+|||+++++++|+++|++||.|.+|+++.+.+.++|||||+|.+.++|.+|+. |||..++|++|+|.+++
T Consensus        26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~  105 (109)
T 2err_A           26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT  105 (109)
T ss_dssp             TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred             CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence            33478999999999999999999999999999999987766789999999999999999999 99999999999999987


Q ss_pred             C
Q psy14559        242 Q  242 (405)
Q Consensus       242 ~  242 (405)
                      .
T Consensus       106 ~  106 (109)
T 2err_A          106 A  106 (109)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}

Probab=99.72  E-value=6.3e-18  Score=136.73  Aligned_cols=77  Identities=19%  Similarity=0.292  Sum_probs=70.6

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCC--eeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCc----eeCCeeEE
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGT--VNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGT----NLKGKTLQ  236 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~--I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~----~l~g~~i~  236 (405)
                      -.||||+|||+++|+++|+++|++||.  |.+|+++.|  ++.+||||||+|.+.++|.+|++ |||.    .+.||+|.
T Consensus         9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~   88 (95)
T 2lkz_A            9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIG   88 (95)
T ss_dssp             CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEE
T ss_pred             cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEE
Confidence            469999999999999999999999995  678998766  68899999999999999999998 9996    59999999


Q ss_pred             EeeccC
Q psy14559        237 MFHSTQ  242 (405)
Q Consensus       237 V~~a~~  242 (405)
                      |++|++
T Consensus        89 V~~Aks   94 (95)
T 2lkz_A           89 VDFAKS   94 (95)
T ss_dssp             EEECCC
T ss_pred             EEEccC
Confidence            999874

>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}

Probab=99.72  E-value=7.2e-18  Score=134.96  Aligned_cols=76  Identities=16%  Similarity=0.264  Sum_probs=69.9

Q ss_pred             cEEEEeCCCCCCCHHHHHHHHhcCC-CeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-h-CCceeCCeeEEEeecc
Q psy14559        167 RTLVAINIEESVSPQELVDFFQKVG-TVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-L-NGTNLKGKTLQMFHST  241 (405)
Q Consensus       167 rtvfV~NLp~~~tee~L~~~F~~~G-~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-l-ng~~l~g~~i~V~~a~  241 (405)
                      ++|||+|||+++|+++|+++|++|| +|.+|+++.+  ++.++|||||+|.+.++|.+|++ + ++..++|++|+|++++
T Consensus         2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~   81 (91)
T 2lxi_A            2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD   81 (91)
T ss_dssp             CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence            6899999999999999999999999 8999999765  67899999999999999999998 6 4578999999999986


Q ss_pred             C
Q psy14559        242 Q  242 (405)
Q Consensus       242 ~  242 (405)
                      .
T Consensus        82 ~   82 (91)
T 2lxi_A           82 P   82 (91)
T ss_dssp             S
T ss_pred             C
Confidence            3

>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.72  E-value=8.4e-17  Score=131.06  Aligned_cols=79  Identities=20%  Similarity=0.344  Sum_probs=74.5

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCCC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQSI  244 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~~  244 (405)
                      .++|||+|||+++++++|+++|++||.|.+|+++.+.+.++|||||+|.+.++|.+|+. |||..|.|++|+|.+++...
T Consensus        15 ~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~   94 (103)
T 2cq3_A           15 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARV   94 (103)
T ss_dssp             CCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCSSC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcccCC
Confidence            68999999999999999999999999999999988766689999999999999999998 99999999999999997553

>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.72  E-value=7e-17  Score=131.53  Aligned_cols=79  Identities=24%  Similarity=0.429  Sum_probs=74.3

Q ss_pred             cCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCC
Q psy14559        165 IRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQS  243 (405)
Q Consensus       165 ~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~  243 (405)
                      ..++|||+|||+++++++|+++|++||.|.+|+++.+.+.++|||||+|.+.++|.+|+. |||..+.|++|+|.+++..
T Consensus        14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~   93 (103)
T 2cqi_A           14 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTP   93 (103)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCT
T ss_pred             CCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCCC
Confidence            378999999999999999999999999999999988766689999999999999999999 9999999999999999754

>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*

Probab=99.71  E-value=7.7e-17  Score=148.44  Aligned_cols=146  Identities=18%  Similarity=0.212  Sum_probs=106.1

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~  242 (405)
                      .+||||+|||+++|+++|+++|++||+|.+|+|+.+  ++.++|||||+|.+.++|.+|+. +||..+.|+.|++..+..
T Consensus        15 ~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~   94 (213)
T 4f02_A           15 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQR   94 (213)
T ss_dssp             CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred             CcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccccc
Confidence            679999999999999999999999999999999875  67899999999999999999998 999999999999998753


Q ss_pred             CCCCCC---------CCChHHHHHHHHHHHHHHHHhhhhhhhccCcccCcccccccCCCCCceEEEEEEEeeehhhHHHh
Q psy14559        243 SIQKPE---------AKSNEAAQREIEEAMSRVKEAQNMISAAIDPVIGILSKDKKKSHSPVRHLVIVLIVVDVALDLAL  313 (405)
Q Consensus       243 ~~~~p~---------~~~~~~~~~e~~~~~k~~~~~~~~~s~~~ep~~~~~~~dk~~~~s~~~~~~~~~~~~d~~~~~al  313 (405)
                      ......         .........++.+.+..+          .+....++.+|+.  .  .+|++++.|.....+++||
T Consensus        95 ~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~----------G~i~~~~i~~d~~--~--~~g~~fV~f~~~~~a~~Ai  160 (213)
T 4f02_A           95 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF----------GNILSCKVVCDEN--G--SKGYGFVHFETQEAAERAI  160 (213)
T ss_dssp             CTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGG----------SCEEEEEEEEETT--E--EEEEEEEEESSHHHHHHHH
T ss_pred             cccccccccccceECCcccccHHHHHHHHHhhc----------CCeEEEEeeccCC--C--CceEEEEEeCCHHHHHHHH
Confidence            310000         001112233333333222          1112222333422  2  4677777888888889999


Q ss_pred             hhCCCcceeeee
Q psy14559        314 EIGDDLEVVVRD  325 (405)
Q Consensus       314 ~~~~~~~~~~~~  325 (405)
                      +..++..+.++.
T Consensus       161 ~~lng~~~~g~~  172 (213)
T 4f02_A          161 EKMNGMLLNDRK  172 (213)
T ss_dssp             HHHTTCEETTEE
T ss_pred             HHhCCCEECCEE
Confidence            988888877663

>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A

Probab=99.71  E-value=3.4e-17  Score=129.18  Aligned_cols=76  Identities=18%  Similarity=0.270  Sum_probs=71.1

Q ss_pred             cCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeec
Q psy14559        165 IRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHS  240 (405)
Q Consensus       165 ~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a  240 (405)
                      ..++|||+|||+++++++|+++|++||.|.++.++.+  ++.++|||||+|.+.++|.+|+.++|..+.|+.|.|+.|
T Consensus        10 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~A   87 (87)
T 3s7r_A           10 DAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKA   87 (87)
T ss_dssp             CTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEeC
Confidence            3789999999999999999999999999999999765  578899999999999999999999999999999999875

>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*

Probab=99.71  E-value=3e-17  Score=128.67  Aligned_cols=76  Identities=22%  Similarity=0.324  Sum_probs=71.3

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST  241 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~  241 (405)
                      .++|||+|||+++++++|+++|++||.|.++.++.+  ++.++|||||+|.+.++|.+|+. |||..+.|++|+|++++
T Consensus         7 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ak   85 (85)
T 3mdf_A            7 KRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK   85 (85)
T ss_dssp             SSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred             CCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence            789999999999999999999999999999998654  66789999999999999999997 99999999999999874

>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.71  E-value=7.4e-17  Score=130.41  Aligned_cols=78  Identities=17%  Similarity=0.346  Sum_probs=73.7

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeeccCC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQS  243 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~~~  243 (405)
                      .++|||+|||+++++++|+++|++||.|.+|.++.+  ++.++|||||+|.+.++|.+|+.|||..+.|++|+|.+++..
T Consensus        10 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a~~~   89 (99)
T 2dgs_A           10 SNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPR   89 (99)
T ss_dssp             CCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEECCCC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence            689999999999999999999999999999999765  678899999999999999999999999999999999999754

>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.71  E-value=2.2e-17  Score=135.44  Aligned_cols=76  Identities=12%  Similarity=0.206  Sum_probs=71.8

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeecc
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHST  241 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~  241 (405)
                      .++|||+|||+++|+++|+++|++||+|.+|+++.+ .+.++|||||+|.+.++|.+|+.++|..+.|+.|.|..+.
T Consensus        11 ~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~~   87 (103)
T 1s79_A           11 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKD   87 (103)
T ss_dssp             GGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEHH
T ss_pred             CCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEch
Confidence            689999999999999999999999999999999866 5789999999999999999999999999999999999765

>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C

Probab=99.71  E-value=6.7e-18  Score=134.49  Aligned_cols=76  Identities=18%  Similarity=0.266  Sum_probs=68.3

Q ss_pred             cEEEEeCCCCCCCHHHHHHHHhcCC--CeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559        167 RTLVAINIEESVSPQELVDFFQKVG--TVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST  241 (405)
Q Consensus       167 rtvfV~NLp~~~tee~L~~~F~~~G--~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~  241 (405)
                      .+|||+|||+++|+++|+++|++||  .|.+++++.+  +|.++|||||+|.+.++|.+|++ |||..+.|+.|+|.++.
T Consensus         2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~   81 (90)
T 3p5t_L            2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN   81 (90)
T ss_dssp             --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred             eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence            4799999999999999999999999  9999999765  78899999999999999999997 99999999999999987


Q ss_pred             C
Q psy14559        242 Q  242 (405)
Q Consensus       242 ~  242 (405)
                      .
T Consensus        82 ~   82 (90)
T 3p5t_L           82 K   82 (90)
T ss_dssp             -
T ss_pred             C
Confidence            3

>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0

Probab=99.70  E-value=6.5e-17  Score=126.16  Aligned_cols=76  Identities=17%  Similarity=0.280  Sum_probs=71.5

Q ss_pred             cEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559        167 RTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       167 rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~  242 (405)
                      .+|||+|||+++++++|+++|++||.|.++.++.+  ++.++|||||+|.+.++|.+|+. |||..+.|++|+|.+++.
T Consensus         2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~   80 (83)
T 3md1_A            2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK   80 (83)
T ss_dssp             EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred             eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence            58999999999999999999999999999999765  67889999999999999999999 999999999999999873

>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}

Probab=99.70  E-value=8.3e-17  Score=140.45  Aligned_cols=146  Identities=19%  Similarity=0.259  Sum_probs=104.1

Q ss_pred             cEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCCC
Q psy14559        167 RTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQSI  244 (405)
Q Consensus       167 rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~~  244 (405)
                      |+|||+|||+++|+++|+++|++||.|.++.++.+ .+.++|||||+|.+.++|..|+. |||..+.|+.|.|.++....
T Consensus         1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~   80 (166)
T 3md3_A            1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ   80 (166)
T ss_dssp             CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred             CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence            68999999999999999999999999999999766 56789999999999999999996 99999999999999986442


Q ss_pred             CCCCCC---------ChHHHHHHHHHHHHHHHHhhhhhhhccCcccCcccccccCCCCCceEEEEEEEeeehhhHHHhhh
Q psy14559        245 QKPEAK---------SNEAAQREIEEAMSRVKEAQNMISAAIDPVIGILSKDKKKSHSPVRHLVIVLIVVDVALDLALEI  315 (405)
Q Consensus       245 ~~p~~~---------~~~~~~~e~~~~~k~~~~~~~~~s~~~ep~~~~~~~dk~~~~s~~~~~~~~~~~~d~~~~~al~~  315 (405)
                      ......         +......++.+.+..+.          +.....+..++..+.  .+|++++.+.....+++|++.
T Consensus        81 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G----------~i~~~~i~~~~~~~~--~~g~afV~f~~~~~A~~A~~~  148 (166)
T 3md3_A           81 QSSSDDTFNLFVGDLNVNVDDETLRNAFKDFP----------SYLSGHVMWDMQTGS--SRGYGFVSFTSQDDAQNAMDS  148 (166)
T ss_dssp             CCCCTTCEEEEEESCCTTCCHHHHHHHHTTST----------TEEEEEEEECTTTCC--EEEEEEEEESCHHHHHHHHHH
T ss_pred             CCCCCCCceEEECCCCCCCCHHHHHHHHhccC----------CeeEEEEEecCCCCC--cceEEEEEeCCHHHHHHHHHH
Confidence            211111         11222334333332211          111222334444444  455666667777888999998


Q ss_pred             CCCcceeee
Q psy14559        316 GDDLEVVVR  324 (405)
Q Consensus       316 ~~~~~~~~~  324 (405)
                      .++..+.++
T Consensus       149 l~g~~~~g~  157 (166)
T 3md3_A          149 MQGQDLNGR  157 (166)
T ss_dssp             HTTCEETTE
T ss_pred             hCCCccCCc
Confidence            777776555

>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A

Probab=99.70  E-value=5.2e-17  Score=129.33  Aligned_cols=78  Identities=18%  Similarity=0.285  Sum_probs=74.3

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQS  243 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~  243 (405)
                      .++|||+|||+++++++|+++|++||.|.++.+..+++.++|||||+|.+.++|.+|+. |||..+.|++|+|.+++..
T Consensus         8 ~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~   86 (92)
T 2dgv_A            8 ACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRNA   86 (92)
T ss_dssp             CCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSCC
T ss_pred             CcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence            68999999999999999999999999999999988888899999999999999999999 9999999999999998744

>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}

Probab=99.70  E-value=5.7e-17  Score=127.62  Aligned_cols=76  Identities=14%  Similarity=0.282  Sum_probs=72.3

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST  241 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~  241 (405)
                      .++|||+|||+++++++|+++|++||.|.++.++.+  ++.++|||||+|.+.++|.+|+. |||..+.|++|+|.+++
T Consensus         6 ~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~   84 (87)
T 3bs9_A            6 HFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT   84 (87)
T ss_dssp             CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred             ceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence            679999999999999999999999999999999765  67889999999999999999999 99999999999999986

>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.70  E-value=1.1e-16  Score=129.33  Aligned_cols=78  Identities=19%  Similarity=0.351  Sum_probs=73.4

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~  242 (405)
                      .++|||+|||+++++++|+++|++||.|.+|.++.+  ++.++|||||+|.+.++|.+|+. |||..+.|++|+|.+++.
T Consensus         8 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~   87 (99)
T 1whw_A            8 SGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTI   87 (99)
T ss_dssp             CEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence            689999999999999999999999999999999765  67899999999999999999997 999999999999999975


Q ss_pred             C
Q psy14559        243 S  243 (405)
Q Consensus       243 ~  243 (405)
                      .
T Consensus        88 ~   88 (99)
T 1whw_A           88 K   88 (99)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.70  E-value=7.3e-17  Score=131.41  Aligned_cols=78  Identities=18%  Similarity=0.291  Sum_probs=74.3

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQS  243 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~  243 (405)
                      .++|||+|||+++++++|+++|++||.|.+|.+..+++.++|||||+|.+.++|.+|+. |||..+.|++|+|.+++..
T Consensus        15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~   93 (103)
T 2d9p_A           15 VVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK   93 (103)
T ss_dssp             CCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECSSC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeccc
Confidence            78999999999999999999999999999999987778899999999999999999999 9999999999999999754

>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.70  E-value=8.3e-17  Score=128.79  Aligned_cols=77  Identities=17%  Similarity=0.292  Sum_probs=72.4

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~  242 (405)
                      .++|||+|||+++++++|+++|++||.|.+|.++.+  ++.++|||||+|.+.++|.+|+. |||..+.|++|+|.+++.
T Consensus        15 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~   94 (95)
T 2cqc_A           15 NCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGPSS   94 (95)
T ss_dssp             GGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCSC
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEecCC
Confidence            689999999999999999999999999999999765  56789999999999999999999 999999999999999863

>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B

Probab=99.70  E-value=9.1e-17  Score=129.25  Aligned_cols=77  Identities=23%  Similarity=0.362  Sum_probs=72.6

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~  242 (405)
                      .++|||+|||+++++++|+++|++||.|.+++++.+  ++.++|||||+|.+.++|.+|+. |||..++|+.|+|.+++.
T Consensus         2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~   81 (96)
T 2x1f_A            2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN   81 (96)
T ss_dssp             CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred             CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence            579999999999999999999999999999999765  57889999999999999999998 999999999999999873

>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}

Probab=99.70  E-value=6.2e-17  Score=129.67  Aligned_cols=77  Identities=25%  Similarity=0.457  Sum_probs=72.5

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~  242 (405)
                      .++|||+|||+++++++|+++|++||.|.+|.++.+ ++.++|||||+|.+.++|.+|+. |||..+.|++|+|.++++
T Consensus        16 ~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~   94 (95)
T 2ywk_A           16 DRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPSS   94 (95)
T ss_dssp             GGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcCC
Confidence            689999999999999999999999999999999765 57789999999999999999999 999999999999999863

>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.70  E-value=7.9e-17  Score=130.88  Aligned_cols=78  Identities=22%  Similarity=0.309  Sum_probs=73.3

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~  242 (405)
                      .++|||+|||+++++++|+++|++||.|.+|.++.+  ++.++|||||+|.+.++|.+|+. |||..|.|++|+|.+++.
T Consensus        12 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~   91 (102)
T 2cqb_A           12 KRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKP   91 (102)
T ss_dssp             CSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCCC
Confidence            789999999999999999999999999999999765  67899999999999999999998 999999999999999975


Q ss_pred             C
Q psy14559        243 S  243 (405)
Q Consensus       243 ~  243 (405)
                      .
T Consensus        92 ~   92 (102)
T 2cqb_A           92 M   92 (102)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A

Probab=99.70  E-value=9.4e-17  Score=126.91  Aligned_cols=77  Identities=22%  Similarity=0.439  Sum_probs=73.0

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeeccC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~~  242 (405)
                      .++|||+|||+++++++|+++|++||.|.++.++.+  ++.++|||||+|.+.++|.+|+.|||..+.|++|+|.+++.
T Consensus         6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~~   84 (89)
T 3ucg_A            6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRT   84 (89)
T ss_dssp             HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETTT
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEccC
Confidence            689999999999999999999999999999999765  67899999999999999999999999999999999999874

>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.69  E-value=6.7e-17  Score=134.16  Aligned_cols=79  Identities=29%  Similarity=0.466  Sum_probs=73.4

Q ss_pred             cccCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeec
Q psy14559        163 EEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHS  240 (405)
Q Consensus       163 ~~~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a  240 (405)
                      +...++|||+|||+++++++|+++|++||.|.+|.++.+  ++.++|||||+|.+.++|.+|+.|||..|.|+.|+|.++
T Consensus        22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a  101 (114)
T 2cq4_A           22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQAS  101 (114)
T ss_dssp             HHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEH
T ss_pred             cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEec
Confidence            334789999999999999999999999999999999765  478999999999999999999999999999999999998


Q ss_pred             c
Q psy14559        241 T  241 (405)
Q Consensus       241 ~  241 (405)
                      +
T Consensus       102 ~  102 (114)
T 2cq4_A          102 Q  102 (114)
T ss_dssp             H
T ss_pred             C
Confidence            6

>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.69  E-value=1.4e-16  Score=130.48  Aligned_cols=78  Identities=18%  Similarity=0.352  Sum_probs=73.5

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc---CCCCCcEEEEEECCHHHHHHHHH-h-CCceeCCeeEEEeec
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR---ENDTNKYALVEFSDQACVIPALK-L-NGTNLKGKTLQMFHS  240 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~---~~~~rg~afV~F~~~e~A~~Al~-l-ng~~l~g~~i~V~~a  240 (405)
                      .++|||+|||+++++++|+++|++||.|.+|+++.+   ++.++|||||+|.+.++|.+|+. | ||..|.|++|+|.++
T Consensus        15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a   94 (107)
T 2cph_A           15 TSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWA   94 (107)
T ss_dssp             CCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEEC
T ss_pred             CCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEeC
Confidence            689999999999999999999999999999999765   77899999999999999999998 8 999999999999999


Q ss_pred             cCC
Q psy14559        241 TQS  243 (405)
Q Consensus       241 ~~~  243 (405)
                      +..
T Consensus        95 ~~~   97 (107)
T 2cph_A           95 DSE   97 (107)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            754

>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.69  E-value=1.7e-16  Score=127.11  Aligned_cols=78  Identities=24%  Similarity=0.455  Sum_probs=73.6

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~  242 (405)
                      .++|||+|||+++++++|+++|++||.|.++.++.+  ++.++|||||+|.+.++|.+|+. |||..+.|++|+|.+++.
T Consensus         5 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~   84 (95)
T 2dnz_A            5 SSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTE   84 (95)
T ss_dssp             CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESSC
T ss_pred             CcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccc
Confidence            689999999999999999999999999999999765  57899999999999999999999 999999999999999975


Q ss_pred             C
Q psy14559        243 S  243 (405)
Q Consensus       243 ~  243 (405)
                      .
T Consensus        85 ~   85 (95)
T 2dnz_A           85 R   85 (95)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.69  E-value=1.2e-16  Score=127.81  Aligned_cols=76  Identities=18%  Similarity=0.301  Sum_probs=71.5

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST  241 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~  241 (405)
                      .++|||+|||+++++++|+++|++||.|.++.++.+  ++.++|||||+|.+.++|.+|++ |||..+.|++|+|++++
T Consensus        16 ~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ak   94 (94)
T 2e5h_A           16 KSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIAI   94 (94)
T ss_dssp             TTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEecC
Confidence            679999999999999999999999999999999765  57789999999999999999997 99999999999999874

>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.69  E-value=1.2e-16  Score=130.14  Aligned_cols=79  Identities=16%  Similarity=0.312  Sum_probs=73.9

Q ss_pred             cCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559        165 IRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST  241 (405)
Q Consensus       165 ~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~  241 (405)
                      ..++|||+|||+++++++|+++|++||.|.+|.++.+  ++.++|||||+|.+.++|.+|+. |||..|.|+.|+|.+++
T Consensus        14 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~   93 (103)
T 2cq0_A           14 DNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAK   93 (103)
T ss_dssp             SSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEECC
Confidence            3789999999999999999999999999999999765  67889999999999999999999 99999999999999987


Q ss_pred             CC
Q psy14559        242 QS  243 (405)
Q Consensus       242 ~~  243 (405)
                      ..
T Consensus        94 ~~   95 (103)
T 2cq0_A           94 PS   95 (103)
T ss_dssp             CC
T ss_pred             CC
Confidence            44

>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A

Probab=99.69  E-value=1.9e-16  Score=131.49  Aligned_cols=78  Identities=14%  Similarity=0.294  Sum_probs=73.6

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~  242 (405)
                      .++|||+|||+++++++|+++|++||.|.+|+++.+  ++.++|||||+|.+.++|.+|+. |||..|.|+.|+|.+++.
T Consensus        15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~   94 (115)
T 2dgo_A           15 HFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR   94 (115)
T ss_dssp             CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSC
T ss_pred             CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccC
Confidence            789999999999999999999999999999999765  67889999999999999999998 999999999999999975


Q ss_pred             C
Q psy14559        243 S  243 (405)
Q Consensus       243 ~  243 (405)
                      .
T Consensus        95 ~   95 (115)
T 2dgo_A           95 K   95 (115)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.69  E-value=1.1e-16  Score=128.38  Aligned_cols=78  Identities=15%  Similarity=0.301  Sum_probs=73.3

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEE-EEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYI-RFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST  241 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i-~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~  241 (405)
                      .++|||+|||+++++++|+++|++||.|.++ +++.+  ++.++|||||+|.+.++|.+|+. |||..+.|++|+|.++.
T Consensus         5 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~   84 (96)
T 1x5t_A            5 SSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAF   84 (96)
T ss_dssp             CCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEec
Confidence            6899999999999999999999999999999 98765  67889999999999999999999 99999999999999997


Q ss_pred             CC
Q psy14559        242 QS  243 (405)
Q Consensus       242 ~~  243 (405)
                      ..
T Consensus        85 ~~   86 (96)
T 1x5t_A           85 KK   86 (96)
T ss_dssp             CC
T ss_pred             cc
Confidence            54

>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}

Probab=99.69  E-value=2.8e-17  Score=128.22  Aligned_cols=71  Identities=20%  Similarity=0.358  Sum_probs=67.3

Q ss_pred             cEEEEeCCCCCC------CHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCe-eEEE
Q psy14559        167 RTLVAINIEESV------SPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGK-TLQM  237 (405)
Q Consensus       167 rtvfV~NLp~~~------tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~-~i~V  237 (405)
                      ++|||+|||+.+      ++++|+++|++||.|.++.++.+++.++|||||+|.+.++|.+|+. |||..+.|+ +|+|
T Consensus         2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V   80 (81)
T 2krb_A            2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV   80 (81)
T ss_dssp             CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred             CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence            689999999999      7799999999999999999987788999999999999999999999 999999999 8876

>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}

Probab=99.69  E-value=9.7e-17  Score=129.81  Aligned_cols=76  Identities=21%  Similarity=0.447  Sum_probs=71.4

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeE--------EEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCee
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNY--------IRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKT  234 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~--------i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~  234 (405)
                      .++|||+|||+++++++|+++|++||.|.+        ++++.+  ++.++|||||+|.+.++|.+|++ |||..+.|++
T Consensus        13 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~   92 (99)
T 2la6_A           13 NNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNP   92 (99)
T ss_dssp             CSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSB
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence            689999999999999999999999999999        988765  67889999999999999999998 9999999999


Q ss_pred             EEEeecc
Q psy14559        235 LQMFHST  241 (405)
Q Consensus       235 i~V~~a~  241 (405)
                      |+|++++
T Consensus        93 l~V~~A~   99 (99)
T 2la6_A           93 IKVSFAT   99 (99)
T ss_dssp             CEEEECC
T ss_pred             EEEEecC
Confidence            9999874

>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A

Probab=99.69  E-value=1.4e-16  Score=139.05  Aligned_cols=147  Identities=15%  Similarity=0.220  Sum_probs=104.5

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~  242 (405)
                      .++|||+|||+++++++|+++|++||.|.++.++.+  ++.++|||||+|.+.++|.+|+. |||..+.|++|+|.++..
T Consensus         2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~   81 (167)
T 1fxl_A            2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP   81 (167)
T ss_dssp             CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred             cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence            579999999999999999999999999999999765  67889999999999999999998 999999999999999864


Q ss_pred             CCCCCCC-------CChHHHHHHHHHHHHHHHHhhhhhhhccCcccCcccccccCCCCCceEEEEEEEeeehhhHHHhhh
Q psy14559        243 SIQKPEA-------KSNEAAQREIEEAMSRVKEAQNMISAAIDPVIGILSKDKKKSHSPVRHLVIVLIVVDVALDLALEI  315 (405)
Q Consensus       243 ~~~~p~~-------~~~~~~~~e~~~~~k~~~~~~~~~s~~~ep~~~~~~~dk~~~~s~~~~~~~~~~~~d~~~~~al~~  315 (405)
                      ....+..       .+......++.+.+....          ......+..++..++  ..|++++.+.....+++|++.
T Consensus        82 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G----------~i~~~~i~~~~~~g~--~~g~afV~f~~~~~A~~A~~~  149 (167)
T 1fxl_A           82 SSASIRDANLYVSGLPKTMTQKELEQLFSQYG----------RIITSRILVDQVTGV--SRGVGFIRFDKRIEAEEAIKG  149 (167)
T ss_dssp             CCGGGTTCEEEEESCCTTCCHHHHHHHHGGGS----------CEEEEEEEECTTTCC--EEEEEEEEESSHHHHHHHHHH
T ss_pred             CcccCCCCcEEECCCCCcCCHHHHHHHHHhcC----------CEeEEEEEecCCCCC--ccceEEEEeCCHHHHHHHHHH
Confidence            3211110       011222333333332221          111122233433333  456666677777788999997


Q ss_pred             CCCcceeee
Q psy14559        316 GDDLEVVVR  324 (405)
Q Consensus       316 ~~~~~~~~~  324 (405)
                      .++..+.++
T Consensus       150 l~g~~~~g~  158 (167)
T 1fxl_A          150 LNGQKPSGA  158 (167)
T ss_dssp             HTTCCCTTC
T ss_pred             hcCCccCCC
Confidence            776665543

>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A

Probab=99.69  E-value=2e-16  Score=131.46  Aligned_cols=78  Identities=17%  Similarity=0.308  Sum_probs=73.3

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~  242 (405)
                      .++|||+|||+++++++|+++|++||.|.+|+++.+  ++.++|||||+|.+.++|.+|+. |||..|.|++|+|.+++.
T Consensus        25 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~  104 (115)
T 2cpz_A           25 GANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRS  104 (115)
T ss_dssp             TCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred             CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCC
Confidence            679999999999999999999999999999999765  67889999999999999999997 999999999999999975


Q ss_pred             C
Q psy14559        243 S  243 (405)
Q Consensus       243 ~  243 (405)
                      .
T Consensus       105 ~  105 (115)
T 2cpz_A          105 K  105 (115)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.69  E-value=1.8e-16  Score=128.30  Aligned_cols=77  Identities=21%  Similarity=0.344  Sum_probs=72.5

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~  242 (405)
                      .++|||+|||+++++++|+++|++||.|.+|.++.+ ++.++|||||+|.+.++|.+|+. |||..+.|++|+|.+++.
T Consensus        17 ~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~   95 (100)
T 2do4_A           17 KHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNS   95 (100)
T ss_dssp             CSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence            679999999999999999999999999999999765 67889999999999999999997 999999999999999874

>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}

Probab=99.69  E-value=1.1e-16  Score=133.54  Aligned_cols=77  Identities=17%  Similarity=0.254  Sum_probs=71.6

Q ss_pred             cCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559        165 IRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST  241 (405)
Q Consensus       165 ~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~  241 (405)
                      ..++|||+|||+++++++|+++|++||.|.+|+++.+  ++.++|||||+|.+.++|.+|+. |||..++|++|+|++++
T Consensus        39 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ak  118 (118)
T 2khc_A           39 EGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLKK  118 (118)
T ss_dssp             CSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC-
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence            3689999999999999999999999999999999755  67899999999999999999998 99999999999999864

>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}

Probab=99.69  E-value=9.1e-17  Score=130.88  Aligned_cols=75  Identities=21%  Similarity=0.304  Sum_probs=68.7

Q ss_pred             cCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCce--eCCeeEEEeecc
Q psy14559        165 IRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTN--LKGKTLQMFHST  241 (405)
Q Consensus       165 ~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~--l~g~~i~V~~a~  241 (405)
                      ..++|||+|||+++|+++|+++|++||.|.++.++.    .||||||+|.+.++|.+|+. |||..  +.|++|.|++|+
T Consensus        20 ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~----~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~   95 (100)
T 3r27_A           20 ASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP----KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYST   95 (100)
T ss_dssp             CCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET----TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECS
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc----CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecc
Confidence            378999999999999999999999999999999863    58999999999999999998 98875  789999999997


Q ss_pred             CC
Q psy14559        242 QS  243 (405)
Q Consensus       242 ~~  243 (405)
                      ..
T Consensus        96 ~k   97 (100)
T 3r27_A           96 SQ   97 (100)
T ss_dssp             CS
T ss_pred             cc
Confidence            54

>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.69  E-value=1.7e-16  Score=127.87  Aligned_cols=77  Identities=19%  Similarity=0.263  Sum_probs=71.6

Q ss_pred             CcEEEEeCCCCCCCHHHHH----HHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q psy14559        166 RRTLVAINIEESVSPQELV----DFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHS  240 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~----~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a  240 (405)
                      .++|||+|||+++++++|+    ++|++||.|.+|+++.+... +|||||+|.+.++|.+|+. |||..+.|++|+|.++
T Consensus         9 ~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~-rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a   87 (96)
T 2dgx_A            9 GADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY-QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLA   87 (96)
T ss_dssp             CEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST-TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC-CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence            5799999999999999999    99999999999999876444 8999999999999999999 9999999999999999


Q ss_pred             cCC
Q psy14559        241 TQS  243 (405)
Q Consensus       241 ~~~  243 (405)
                      +..
T Consensus        88 ~~~   90 (96)
T 2dgx_A           88 TGA   90 (96)
T ss_dssp             CCS
T ss_pred             CCC
Confidence            744

>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}

Probab=99.69  E-value=1.4e-16  Score=131.58  Aligned_cols=80  Identities=18%  Similarity=0.199  Sum_probs=71.7

Q ss_pred             ccCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeecc
Q psy14559        164 EIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHST  241 (405)
Q Consensus       164 ~~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~  241 (405)
                      ...++|||+|||+++++++|+++|++||.|.+|+++.+  ++.++|||||+|.+.++|.+|+..+|..++|+.|+|.++.
T Consensus        23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a~  102 (109)
T 2rs2_A           23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAF  102 (109)
T ss_dssp             ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEECC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEcc
Confidence            33789999999999999999999999999999999765  5889999999999999999999955799999999999987


Q ss_pred             CC
Q psy14559        242 QS  243 (405)
Q Consensus       242 ~~  243 (405)
                      ..
T Consensus       103 ~~  104 (109)
T 2rs2_A          103 PR  104 (109)
T ss_dssp             CC
T ss_pred             CC
Confidence            44

>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.69  E-value=1e-16  Score=130.60  Aligned_cols=78  Identities=24%  Similarity=0.338  Sum_probs=73.4

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~  242 (405)
                      .++|||+|||+++++++|+++|++||.|.+|.++.+  ++.++|||||+|.+.++|.+|+. |||..+.|+.|+|.+++.
T Consensus        13 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~   92 (103)
T 2dnm_A           13 MITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVARY   92 (103)
T ss_dssp             CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECSS
T ss_pred             CeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECCc
Confidence            689999999999999999999999999999999765  57889999999999999999999 999999999999999975


Q ss_pred             C
Q psy14559        243 S  243 (405)
Q Consensus       243 ~  243 (405)
                      .
T Consensus        93 ~   93 (103)
T 2dnm_A           93 G   93 (103)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.69  E-value=2.1e-16  Score=129.06  Aligned_cols=78  Identities=22%  Similarity=0.300  Sum_probs=73.5

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~  242 (405)
                      .++|||+|||+++++++|+++|++||.|.+|.++.+  ++.++|||||+|.+.++|.+|+. |||..|.|++|+|.+++.
T Consensus        15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~   94 (105)
T 1x5u_A           15 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASA   94 (105)
T ss_dssp             TTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETTT
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCC
Confidence            689999999999999999999999999999999765  67899999999999999999999 999999999999999874


Q ss_pred             C
Q psy14559        243 S  243 (405)
Q Consensus       243 ~  243 (405)
                      .
T Consensus        95 ~   95 (105)
T 1x5u_A           95 H   95 (105)
T ss_dssp             T
T ss_pred             C
Confidence            4

>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A

Probab=99.68  E-value=3.6e-17  Score=125.34  Aligned_cols=73  Identities=11%  Similarity=0.251  Sum_probs=68.7

Q ss_pred             EEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeec
Q psy14559        168 TLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHS  240 (405)
Q Consensus       168 tvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a  240 (405)
                      +|||+|||+++++++|+++|++||.|.++.++.+  ++.++|||||+|.+.++|++|+.+||..++|++|+|++|
T Consensus         1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A   75 (75)
T 2mss_A            1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA   75 (75)
T ss_dssp             CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred             CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence            4899999999999999999999999999999765  678999999999999999999999999999999999874

>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A

Probab=99.68  E-value=2.6e-17  Score=133.94  Aligned_cols=76  Identities=20%  Similarity=0.284  Sum_probs=71.9

Q ss_pred             CcEEEEeCCCC------CCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCC-eeE
Q psy14559        166 RRTLVAINIEE------SVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKG-KTL  235 (405)
Q Consensus       166 ~rtvfV~NLp~------~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g-~~i  235 (405)
                      .++|||+|||+      ++++++|+++|++||.|.+|+++.+  ++.++|||||+|.+.++|.+|+. |||..+.| ++|
T Consensus         6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l   85 (100)
T 3ns6_A            6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL   85 (100)
T ss_dssp             GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred             CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence            68999999999      9999999999999999999999765  58899999999999999999998 99999999 999


Q ss_pred             EEeecc
Q psy14559        236 QMFHST  241 (405)
Q Consensus       236 ~V~~a~  241 (405)
                      +|.++.
T Consensus        86 ~V~~a~   91 (100)
T 3ns6_A           86 FLYTMK   91 (100)
T ss_dssp             EEEESH
T ss_pred             EEEECc
Confidence            999875

>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A

Probab=99.68  E-value=1.3e-16  Score=139.80  Aligned_cols=146  Identities=16%  Similarity=0.231  Sum_probs=104.4

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~  242 (405)
                      .++|||+|||+++++++|+++|++||.|.++.++.+  ++.++|||||+|.+.++|..|+. |+|..+.|++|.|.++..
T Consensus         3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~   82 (168)
T 1b7f_A            3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARP   82 (168)
T ss_dssp             CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred             ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCC
Confidence            689999999999999999999999999999999654  67789999999999999999998 999999999999999864


Q ss_pred             CCCCCCCC-------ChHHHHHHHHHHHHHHHHhhhhhhhccCcccCcccccccCCCCCceEEEEEEEeeehhhHHHhhh
Q psy14559        243 SIQKPEAK-------SNEAAQREIEEAMSRVKEAQNMISAAIDPVIGILSKDKKKSHSPVRHLVIVLIVVDVALDLALEI  315 (405)
Q Consensus       243 ~~~~p~~~-------~~~~~~~e~~~~~k~~~~~~~~~s~~~ep~~~~~~~dk~~~~s~~~~~~~~~~~~d~~~~~al~~  315 (405)
                      ....+...       +......++.+.+..+          .+.....+.+++..+++  +|++++.|.....+++|++.
T Consensus        83 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~----------G~i~~~~i~~~~~~~~~--~g~afV~f~~~~~A~~A~~~  150 (168)
T 1b7f_A           83 GGESIKDTNLYVTNLPRTITDDQLDTIFGKY----------GSIVQKNILRDKLTGRP--RGVAFVRYNKREEAQEAISA  150 (168)
T ss_dssp             CSSTTTTCEEEEESCCTTCCHHHHHHHHTSS----------SCEEEEEEEECTTTCCE--EEEEEEEESSHHHHHHHHHH
T ss_pred             CcccCCCCCEEEeCCCCCCCHHHHHHhhhcC----------CcEEEEEEEEcCCCCCc--ceEEEEEECCHHHHHHHHHH
Confidence            42211111       1122233333333221          11112223344434443  56676677778888999997


Q ss_pred             CCCcceee
Q psy14559        316 GDDLEVVV  323 (405)
Q Consensus       316 ~~~~~~~~  323 (405)
                      .++..+.+
T Consensus       151 l~g~~~~g  158 (168)
T 1b7f_A          151 LNNVIPEG  158 (168)
T ss_dssp             HTTCCCTT
T ss_pred             hcCCEecC
Confidence            66666543

>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=99.68  E-value=1.1e-16  Score=132.12  Aligned_cols=77  Identities=25%  Similarity=0.462  Sum_probs=72.4

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~  242 (405)
                      .++|||+|||+++++++|+++|++||.|.+|.++.+  ++.++|||||+|.+.++|.+|+. |||..+.|++|+|.+++.
T Consensus        26 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~  105 (108)
T 2jrs_A           26 PMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTE  105 (108)
T ss_dssp             CEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSCS
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEccc
Confidence            689999999999999999999999999999999765  57789999999999999999998 999999999999999863

>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.68  E-value=1.3e-16  Score=128.67  Aligned_cols=78  Identities=23%  Similarity=0.363  Sum_probs=72.2

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccC---C--CCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEee
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRE---N--DTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFH  239 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~---~--~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~  239 (405)
                      .++|||+|||+++++++|+++|++||.|.+|.+..+.   +  .++|||||+|.+.++|.+|+. |||..+.|++|+|.+
T Consensus         5 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~   84 (98)
T 2cpf_A            5 SSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRI   84 (98)
T ss_dssp             CCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEEC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence            6799999999999999999999999999999997542   2  788999999999999999999 999999999999999


Q ss_pred             ccCC
Q psy14559        240 STQS  243 (405)
Q Consensus       240 a~~~  243 (405)
                      ++..
T Consensus        85 a~~~   88 (98)
T 2cpf_A           85 SERA   88 (98)
T ss_dssp             SSCS
T ss_pred             ccCC
Confidence            9754

>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.68  E-value=1.2e-16  Score=131.37  Aligned_cols=76  Identities=13%  Similarity=0.207  Sum_probs=69.4

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hC--CceeCCeeEEEeeccC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LN--GTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-ln--g~~l~g~~i~V~~a~~  242 (405)
                      .++|||+|||+++|+++|+++|++||.|.+|+++.+    ||||||+|.+.++|..|+. |+  |..|.|++|+|.+++.
T Consensus        16 ~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~   91 (105)
T 1sjq_A           16 SRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNH   91 (105)
T ss_dssp             CCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSS
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCC
Confidence            689999999999999999999999999999999753    8999999999999999998 76  4799999999999975


Q ss_pred             CCC
Q psy14559        243 SIQ  245 (405)
Q Consensus       243 ~~~  245 (405)
                      ...
T Consensus        92 ~~~   94 (105)
T 1sjq_A           92 KEL   94 (105)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            533

>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A

Probab=99.68  E-value=2.5e-16  Score=128.56  Aligned_cols=78  Identities=18%  Similarity=0.306  Sum_probs=73.1

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHH-hCCceeCC---eeEEEeec
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALK-LNGTNLKG---KTLQMFHS  240 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g---~~i~V~~a  240 (405)
                      .++|||+|||+++++++|+++|++||.|.+|.++.+ ++.++|||||+|.+.++|.+|+. |||..+.|   ++|+|.++
T Consensus        15 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a   94 (105)
T 2dnh_A           15 DRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFA   94 (105)
T ss_dssp             CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEES
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEEC
Confidence            789999999999999999999999999999999765 67789999999999999999998 99999998   99999999


Q ss_pred             cCC
Q psy14559        241 TQS  243 (405)
Q Consensus       241 ~~~  243 (405)
                      +..
T Consensus        95 ~~~   97 (105)
T 2dnh_A           95 DTD   97 (105)
T ss_dssp             CSS
T ss_pred             ccC
Confidence            754

>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.68  E-value=1.6e-16  Score=128.96  Aligned_cols=78  Identities=17%  Similarity=0.313  Sum_probs=73.3

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~  242 (405)
                      .++|||+|||+++++++|+++|++||.|.+|.++.+  ++.++|||||+|.+.++|.+|+. |||..|.|++|+|.+++.
T Consensus        12 ~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~   91 (102)
T 1x5s_A           12 EGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGK   91 (102)
T ss_dssp             CSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEEC
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence            689999999999999999999999999999999765  67789999999999999999997 999999999999999975


Q ss_pred             C
Q psy14559        243 S  243 (405)
Q Consensus       243 ~  243 (405)
                      .
T Consensus        92 ~   92 (102)
T 1x5s_A           92 S   92 (102)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}

Probab=99.68  E-value=7.7e-17  Score=132.20  Aligned_cols=77  Identities=19%  Similarity=0.310  Sum_probs=72.6

Q ss_pred             CcEEEEeCCCCCC------CHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCe-eEEE
Q psy14559        166 RRTLVAINIEESV------SPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGK-TLQM  237 (405)
Q Consensus       166 ~rtvfV~NLp~~~------tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~-~i~V  237 (405)
                      .++|||+|||+.+      ++++|+++|++||.|.+|.++..+|.++|||||+|.+.++|.+|+. |||..|.|+ +|+|
T Consensus        15 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V   94 (105)
T 2nlw_A           15 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV   94 (105)
T ss_dssp             CSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEE
T ss_pred             CCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEE
Confidence            6899999999999      7899999999999999999986688999999999999999999999 999999999 9999


Q ss_pred             eeccC
Q psy14559        238 FHSTQ  242 (405)
Q Consensus       238 ~~a~~  242 (405)
                      .++..
T Consensus        95 ~~a~~   99 (105)
T 2nlw_A           95 NLFTD   99 (105)
T ss_dssp             ECSCC
T ss_pred             EEcch
Confidence            99863

>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}

Probab=99.68  E-value=2e-16  Score=132.22  Aligned_cols=78  Identities=19%  Similarity=0.345  Sum_probs=73.5

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQS  243 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~  243 (405)
                      .++|||+|||+++++++|+++|++||.|.+|.++.+ ++.++|||||+|.+.++|++|+. |||..+.|+.|+|.+++..
T Consensus         7 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~   86 (116)
T 2fy1_A            7 PGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKKP   86 (116)
T ss_dssp             CCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCCS
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCC
Confidence            689999999999999999999999999999999766 67899999999999999999998 9999999999999999743

>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.68  E-value=2.8e-16  Score=129.42  Aligned_cols=78  Identities=19%  Similarity=0.345  Sum_probs=73.2

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hC------CceeCCeeEE
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LN------GTNLKGKTLQ  236 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-ln------g~~l~g~~i~  236 (405)
                      .++|||+|||+++++++|+++|++||.|.+|+++.+  ++.++|||||+|.+.++|.+|+. ||      |..+.|++|+
T Consensus        15 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~   94 (111)
T 1x4h_A           15 GKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLK   94 (111)
T ss_dssp             CCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEE
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEEE
Confidence            689999999999999999999999999999999765  57789999999999999999998 99      9999999999


Q ss_pred             EeeccCC
Q psy14559        237 MFHSTQS  243 (405)
Q Consensus       237 V~~a~~~  243 (405)
                      |.++...
T Consensus        95 v~~a~~~  101 (111)
T 1x4h_A           95 VDLAVTR  101 (111)
T ss_dssp             EECCCCC
T ss_pred             EEECCCC
Confidence            9998754

>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A

Probab=99.68  E-value=6.6e-16  Score=138.89  Aligned_cols=147  Identities=10%  Similarity=0.107  Sum_probs=102.1

Q ss_pred             cCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeeccC
Q psy14559        165 IRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       165 ~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~~  242 (405)
                      ..++|||+|||+++|+++|+++|++||.|.+|.++.+  ++.++|||||+|.+.++|.+|+.++|..+.|+.|.|.++..
T Consensus        12 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~~~   91 (196)
T 1l3k_A           12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVS   91 (196)
T ss_dssp             GGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEECCC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecccC
Confidence            3789999999999999999999999999999999765  57789999999999999999999999999999999999864


Q ss_pred             CCCCCCC-------------CChHHHHHHHHHHHHHHHHhhhhhhhccCcccCcccccccCCCCCceEEEEEEEeeehhh
Q psy14559        243 SIQKPEA-------------KSNEAAQREIEEAMSRVKEAQNMISAAIDPVIGILSKDKKKSHSPVRHLVIVLIVVDVAL  309 (405)
Q Consensus       243 ~~~~p~~-------------~~~~~~~~e~~~~~k~~~~~~~~~s~~~ep~~~~~~~dk~~~~s~~~~~~~~~~~~d~~~  309 (405)
                      .......             .+......++.+.+..+          .+.....+..++..++  .+|++++.|.....+
T Consensus        92 ~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~----------G~i~~v~i~~~~~~g~--~~g~afV~F~~~~~A  159 (196)
T 1l3k_A           92 REDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQY----------GKIEVIEIMTDRGSGK--KRGFAFVTFDDHDSV  159 (196)
T ss_dssp             -----------CCSEEEEECCTTTCCHHHHHHHHTTT----------SCEEEEEEEECTTTCC--EEEEEEEEESSHHHH
T ss_pred             cccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcC----------CCeEEEEEeecCCCCC--ccceEEEEECCHHHH
Confidence            3211100             01112223333332211          1111222334444444  455666667777778


Q ss_pred             HHHhhhCCCcceeee
Q psy14559        310 DLALEIGDDLEVVVR  324 (405)
Q Consensus       310 ~~al~~~~~~~~~~~  324 (405)
                      ++||+. ++..+.++
T Consensus       160 ~~A~~~-~~~~~~G~  173 (196)
T 1l3k_A          160 DKIVIQ-KYHTVNGH  173 (196)
T ss_dssp             HHHHHC-SCCEETTE
T ss_pred             HHHHHh-CCcEECCE
Confidence            899986 45555554

>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A

Probab=99.67  E-value=2.1e-16  Score=129.49  Aligned_cols=76  Identities=24%  Similarity=0.339  Sum_probs=72.0

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST  241 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~  241 (405)
                      .++|||+|||+.+++++|+++|++||.|.+|.++.+ ++.++|||||+|.+.++|.+|+. |||..+.|++|+|++++
T Consensus        29 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~  106 (107)
T 3ulh_A           29 GGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT  106 (107)
T ss_dssp             SEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence            689999999999999999999999999999999765 77789999999999999999999 99999999999999875

>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.67  E-value=4.5e-16  Score=126.77  Aligned_cols=77  Identities=16%  Similarity=0.261  Sum_probs=72.2

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeeccCC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQS  243 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~~~  243 (405)
                      .++|||+|||+++++++|+++|++|| |.+|+++.+  ++.++|||||+|.+.++|.+|+.|||..|.|++|+|.+++..
T Consensus        15 ~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~   93 (103)
T 2dng_A           15 PYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIAEGR   93 (103)
T ss_dssp             CEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEECCCC
T ss_pred             CeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEEecCC
Confidence            68999999999999999999999997 999999766  578899999999999999999999999999999999998754

>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.67  E-value=6.3e-16  Score=128.63  Aligned_cols=78  Identities=15%  Similarity=0.208  Sum_probs=72.3

Q ss_pred             cCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559        165 IRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST  241 (405)
Q Consensus       165 ~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~  241 (405)
                      ..++|||+|||+++++++|+++|++||.|.+|+++.+  ++.++|||||+|.+.++|++|+. +++ .|.|++|+|.++.
T Consensus        16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a~   94 (116)
T 2cqd_A           16 TFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLAY   94 (116)
T ss_dssp             SSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEEST
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEcc
Confidence            3789999999999999999999999999999999765  67899999999999999999999 888 8999999999986


Q ss_pred             CC
Q psy14559        242 QS  243 (405)
Q Consensus       242 ~~  243 (405)
                      ..
T Consensus        95 ~~   96 (116)
T 2cqd_A           95 LG   96 (116)
T ss_dssp             TT
T ss_pred             cC
Confidence            43

>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1

Probab=99.67  E-value=2.2e-16  Score=129.15  Aligned_cols=77  Identities=21%  Similarity=0.341  Sum_probs=72.5

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~  242 (405)
                      .++|||+|||+++++++|+++|++||.|.+|.++.+  ++.++|||||+|.+.++|.+|+. |||..+.|+.|+|.++..
T Consensus        23 ~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~  102 (106)
T 1p27_B           23 GWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFV  102 (106)
T ss_dssp             BEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESEE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeecC
Confidence            689999999999999999999999999999999765  57789999999999999999998 999999999999999863

>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.67  E-value=2.1e-16  Score=127.63  Aligned_cols=77  Identities=22%  Similarity=0.313  Sum_probs=72.5

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCee-EEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCee----EEE
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVN-YIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKT----LQM  237 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~-~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~----i~V  237 (405)
                      .++|||+|||+++++++|+++|++||.|. +++++.+  ++.++|||||+|.+.++|++|+. |||..+.|+.    |+|
T Consensus         9 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v   88 (99)
T 2div_A            9 AASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKL   88 (99)
T ss_dssp             SSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECCE
T ss_pred             ccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEEE
Confidence            68999999999999999999999999999 9999765  67889999999999999999999 9999999999    999


Q ss_pred             eeccC
Q psy14559        238 FHSTQ  242 (405)
Q Consensus       238 ~~a~~  242 (405)
                      .+++.
T Consensus        89 ~~a~~   93 (99)
T 2div_A           89 NYATY   93 (99)
T ss_dssp             EETTC
T ss_pred             eecCC
Confidence            99874

>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.67  E-value=1.9e-16  Score=131.83  Aligned_cols=76  Identities=17%  Similarity=0.229  Sum_probs=71.9

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCe-eEEEEecc-CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeecc
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTV-NYIRFCTR-ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHST  241 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I-~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~  241 (405)
                      .++|||+|||+++|+++|+++|++||.| .+|+|+.+ ++.++|||||+|.+.++|.+|+.+||..|.|+.|.|.++.
T Consensus        15 ~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~a~   92 (114)
T 2cpy_A           15 KVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVT   92 (114)
T ss_dssp             CCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEEEC
T ss_pred             ccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEECC
Confidence            6899999999999999999999999999 88999765 6789999999999999999999999999999999999986

>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}

Probab=99.67  E-value=2.2e-16  Score=124.40  Aligned_cols=76  Identities=18%  Similarity=0.355  Sum_probs=70.6

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccC--CC-CCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRE--ND-TNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST  241 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~--~~-~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~  241 (405)
                      .++|||+|||+++++++|+++|++||.|.++.++.+.  +. ++|||||+|.+.++|.+|+. |||..+.|+.|+|+++.
T Consensus         4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~   83 (88)
T 4a8x_A            4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVL   83 (88)
T ss_dssp             CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECC
Confidence            5799999999999999999999999999999996653  33 89999999999999999999 99999999999999986

>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}

Probab=99.66  E-value=1.6e-16  Score=125.70  Aligned_cols=72  Identities=15%  Similarity=0.126  Sum_probs=67.8

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST  241 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~  241 (405)
                      ...|||+||++.+|+++|+++|++||+|.++.+..    ++|||||+|.+.++|.+|++ |||..+.|++|+|+.+.
T Consensus         7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~   79 (89)
T 2wbr_A            7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS   79 (89)
T ss_dssp             CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred             cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence            45799999999999999999999999999999843    79999999999999999999 99999999999999874

>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A

Probab=99.66  E-value=3.3e-16  Score=128.09  Aligned_cols=78  Identities=12%  Similarity=0.227  Sum_probs=72.9

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCcee---CCeeEEEee
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNL---KGKTLQMFH  239 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l---~g~~i~V~~  239 (405)
                      .++|||+|||+++++++|+++|++||.|.+|+++.+  ++.++|||||+|.+.++|.+|+. |||..+   .|++|+|.+
T Consensus        13 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~   92 (106)
T 2dgp_A           13 AIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKP   92 (106)
T ss_dssp             CEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEE
Confidence            689999999999999999999999999999999765  67899999999999999999998 999988   899999999


Q ss_pred             ccCC
Q psy14559        240 STQS  243 (405)
Q Consensus       240 a~~~  243 (405)
                      +...
T Consensus        93 a~~~   96 (106)
T 2dgp_A           93 ADSE   96 (106)
T ss_dssp             CCCC
T ss_pred             CCcc
Confidence            9754

>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}

Probab=99.66  E-value=6.3e-17  Score=131.47  Aligned_cols=76  Identities=20%  Similarity=0.346  Sum_probs=70.8

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeeccC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR---ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~---~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~~  242 (405)
                      .++|||+|||+++++++|+++|++|| |.+|+++.+   ++.++|||||+|.+.++|.+|+.|||..++|+.|+|.+++.
T Consensus        19 ~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~~a~~   97 (100)
T 2j76_E           19 PYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDVADQ   97 (100)
T ss_dssp             -CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCEECCC
T ss_pred             CcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEEeccC
Confidence            78999999999999999999999999 999999754   57899999999999999999999999999999999999863

>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}

Probab=99.66  E-value=2.2e-16  Score=139.06  Aligned_cols=77  Identities=21%  Similarity=0.324  Sum_probs=71.8

Q ss_pred             cCcEEEEeCCCCCCCHHHHHHHHhcCC--CeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEee
Q psy14559        165 IRRTLVAINIEESVSPQELVDFFQKVG--TVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFH  239 (405)
Q Consensus       165 ~~rtvfV~NLp~~~tee~L~~~F~~~G--~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~  239 (405)
                      ..++|||+|||+++|+++|+++|++||  .|.+|+++.+  +|.++|||||+|.+.++|.+|+. |||..|.|+.|+|.+
T Consensus        54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~  133 (156)
T 3n9u_C           54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP  133 (156)
T ss_dssp             --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence            368999999999999999999999999  9999999866  78899999999999999999999 999999999999999


Q ss_pred             cc
Q psy14559        240 ST  241 (405)
Q Consensus       240 a~  241 (405)
                      +.
T Consensus       134 a~  135 (156)
T 3n9u_C          134 AT  135 (156)
T ss_dssp             CC
T ss_pred             cC
Confidence            86

>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.66  E-value=4.5e-16  Score=128.91  Aligned_cols=78  Identities=17%  Similarity=0.265  Sum_probs=72.9

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQS  243 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~  243 (405)
                      .++|||+|||+++++++|+++|++||.|.+|.++.+ ++.++|||||+|.+.++|.+|+. |||..|.|+.|+|.+++..
T Consensus        15 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~   94 (114)
T 2do0_A           15 GSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERA   94 (114)
T ss_dssp             CSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcccC
Confidence            679999999999999999999999999999999765 67789999999999999999999 9999999999999998643

>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*

Probab=99.66  E-value=3.5e-16  Score=128.86  Aligned_cols=77  Identities=25%  Similarity=0.362  Sum_probs=72.6

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~  242 (405)
                      .++|||+|||+++++++|+++|++||.|.+|.++.+  ++.++|||||+|.+.++|..|+. |||..+.|++|+|.++..
T Consensus        26 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~  105 (110)
T 1oo0_B           26 GWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFV  105 (110)
T ss_dssp             BEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEccc
Confidence            689999999999999999999999999999999765  67889999999999999999998 999999999999999863

>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.66  E-value=9.3e-16  Score=126.19  Aligned_cols=77  Identities=19%  Similarity=0.301  Sum_probs=71.5

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQS  243 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~  243 (405)
                      .++|||+|||+++|+++|+++|++||.|.+|.+.. ++.++|||||+|.+.++|.+|++ |||..|.|+.|+|.+++..
T Consensus        22 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~   99 (109)
T 1x4a_A           22 DCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN-RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSG   99 (109)
T ss_dssp             SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC-SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE-CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcccC
Confidence            68999999999999999999999999999999854 35579999999999999999997 9999999999999999754

>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.66  E-value=2.6e-16  Score=128.58  Aligned_cols=79  Identities=20%  Similarity=0.291  Sum_probs=73.7

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeeccCC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQS  243 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~~~  243 (405)
                      .++|||+|||+++++++|+++|++||.|.+|.++.+  ++.++|||||+|.+.++|.+|+..||..|.|+.|.|.+++..
T Consensus        16 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~a~~~   95 (105)
T 2dh8_A           16 IGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPR   95 (105)
T ss_dssp             SSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCCSCCS
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEccCC
Confidence            789999999999999999999999999999999765  678899999999999999999988999999999999998755


Q ss_pred             C
Q psy14559        244 I  244 (405)
Q Consensus       244 ~  244 (405)
                      .
T Consensus        96 ~   96 (105)
T 2dh8_A           96 G   96 (105)
T ss_dssp             S
T ss_pred             C
Confidence            3

>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.66  E-value=5.9e-16  Score=126.32  Aligned_cols=77  Identities=21%  Similarity=0.354  Sum_probs=72.2

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--C-CCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeeccC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--E-NDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~-~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~~  242 (405)
                      .++|||+|||+++++++|+++|++|| |.+|.++.+  + +.++|||||+|.+.++|.+|+.|||..|.|+.|+|.+++.
T Consensus        15 ~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~   93 (104)
T 1wi8_A           15 PYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDVADQ   93 (104)
T ss_dssp             CEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEECCC
T ss_pred             CCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEEEccC
Confidence            68999999999999999999999999 999999766  3 7889999999999999999999999999999999999975


Q ss_pred             C
Q psy14559        243 S  243 (405)
Q Consensus       243 ~  243 (405)
                      .
T Consensus        94 ~   94 (104)
T 1wi8_A           94 A   94 (104)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}

Probab=99.66  E-value=2e-16  Score=133.11  Aligned_cols=79  Identities=22%  Similarity=0.415  Sum_probs=73.8

Q ss_pred             ccCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeecc
Q psy14559        164 EIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHST  241 (405)
Q Consensus       164 ~~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~  241 (405)
                      ...++|||+|||+++|+++|+++|++||.|.+|.++.+  ++.++|||||+|.+.++|.+|+.|||..|.|+.|+|.+++
T Consensus        34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~  113 (124)
T 2jwn_A           34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKR  113 (124)
T ss_dssp             HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESS
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence            34689999999999999999999999999999999765  6789999999999999999999999999999999999987


Q ss_pred             C
Q psy14559        242 Q  242 (405)
Q Consensus       242 ~  242 (405)
                      .
T Consensus       114 ~  114 (124)
T 2jwn_A          114 T  114 (124)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.66  E-value=9.1e-16  Score=125.37  Aligned_cols=74  Identities=16%  Similarity=0.244  Sum_probs=68.3

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-h--CCceeCCeeEEEeeccC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-L--NGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-l--ng~~l~g~~i~V~~a~~  242 (405)
                      .++|||+|||+++++++|+++|++||.|.+|.++.+    ||||||+|.+.++|..|+. |  ++..+.|++|.|++++.
T Consensus        15 ~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~   90 (101)
T 2cq1_A           15 SRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNH   90 (101)
T ss_dssp             CSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCc
Confidence            689999999999999999999999999999988653    8999999999999999997 5  57889999999999985


Q ss_pred             C
Q psy14559        243 S  243 (405)
Q Consensus       243 ~  243 (405)
                      .
T Consensus        91 ~   91 (101)
T 2cq1_A           91 K   91 (101)
T ss_dssp             S
T ss_pred             c
Confidence            5

>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.66  E-value=5.3e-16  Score=126.93  Aligned_cols=78  Identities=19%  Similarity=0.291  Sum_probs=72.2

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeE-EEEecc-CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeeccCC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNY-IRFCTR-ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQS  243 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~-i~i~~~-~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~~~  243 (405)
                      .++|||+|||+++|+++|+++|++||.|.+ |.++.+ +++++|||||+|.+.++|.+|+..||..++|+.|.|..+...
T Consensus        15 ~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~~~~   94 (104)
T 1wg5_A           15 DGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRA   94 (104)
T ss_dssp             CCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEECTT
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEECCHH
Confidence            679999999999999999999999999987 888655 788999999999999999999999999999999999988644

>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.66  E-value=5.1e-16  Score=128.48  Aligned_cols=78  Identities=21%  Similarity=0.428  Sum_probs=72.6

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCee--------EEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCee
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVN--------YIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKT  234 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~--------~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~  234 (405)
                      .++|||+|||+++++++|+++|++||.|.        .|+++.+  ++.++|||||+|.+.++|.+|+. |||..|.|+.
T Consensus        15 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~   94 (113)
T 2cpe_A           15 NSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSK   94 (113)
T ss_dssp             CCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEE
T ss_pred             CCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCCE
Confidence            78999999999999999999999999999        5888654  67889999999999999999998 9999999999


Q ss_pred             EEEeeccCC
Q psy14559        235 LQMFHSTQS  243 (405)
Q Consensus       235 i~V~~a~~~  243 (405)
                      |+|.+++..
T Consensus        95 l~V~~a~~~  103 (113)
T 2cpe_A           95 LKVSLARKK  103 (113)
T ss_dssp             CEEECSSCC
T ss_pred             EEEEECCCC
Confidence            999998754

>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1

Probab=99.66  E-value=4.8e-16  Score=133.42  Aligned_cols=80  Identities=21%  Similarity=0.424  Sum_probs=74.2

Q ss_pred             ccCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q psy14559        164 EIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHS  240 (405)
Q Consensus       164 ~~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a  240 (405)
                      ...++|||+|||+++++++|+++|+.||.|.+|+++.+  ++.++|||||+|.+.++|.+|+. |||..|.|+.|+|.++
T Consensus        40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a  119 (139)
T 1u6f_A           40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA  119 (139)
T ss_dssp             TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence            34789999999999999999999999999999999765  56789999999999999999999 9999999999999999


Q ss_pred             cCC
Q psy14559        241 TQS  243 (405)
Q Consensus       241 ~~~  243 (405)
                      +..
T Consensus       120 ~~~  122 (139)
T 1u6f_A          120 ASG  122 (139)
T ss_dssp             SCC
T ss_pred             CCC
Confidence            754

>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}

Probab=99.66  E-value=6.2e-16  Score=130.32  Aligned_cols=80  Identities=21%  Similarity=0.319  Sum_probs=74.6

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQS  243 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~  243 (405)
                      .++|||+|||+++++++|+++|++||.|.+|.++.+ ++.++|||||+|.+.++|.+|+. |||..+.|++|+|.++...
T Consensus        35 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~  114 (124)
T 2kt5_A           35 GAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQ  114 (124)
T ss_dssp             CEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEECCT
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCC
Confidence            689999999999999999999999999999999765 67789999999999999999999 9999999999999999765


Q ss_pred             CC
Q psy14559        244 IQ  245 (405)
Q Consensus       244 ~~  245 (405)
                      ..
T Consensus       115 ~~  116 (124)
T 2kt5_A          115 ID  116 (124)
T ss_dssp             TC
T ss_pred             CC
Confidence            43

>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.66  E-value=8.1e-16  Score=128.00  Aligned_cols=79  Identities=14%  Similarity=0.225  Sum_probs=73.7

Q ss_pred             cCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeeccC
Q psy14559        165 IRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       165 ~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~~  242 (405)
                      ..++|||+|||+++++++|+++|++||.|..|.++.+  ++.++|||||+|.+.++|.+|+..+|..|.|+.|+|.++..
T Consensus        26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~~  105 (116)
T 1x4b_A           26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVA  105 (116)
T ss_dssp             HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCSS
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECCC
Confidence            3689999999999999999999999999999999765  57899999999999999999999999999999999999875


Q ss_pred             C
Q psy14559        243 S  243 (405)
Q Consensus       243 ~  243 (405)
                      .
T Consensus       106 ~  106 (116)
T 1x4b_A          106 R  106 (116)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.65  E-value=2.5e-16  Score=130.43  Aligned_cols=78  Identities=15%  Similarity=0.354  Sum_probs=71.9

Q ss_pred             CcEEEEeCCCCCCCHHHHH---HHHhcCCCeeEEEEeccCC-----CCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEE
Q psy14559        166 RRTLVAINIEESVSPQELV---DFFQKVGTVNYIRFCTREN-----DTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQ  236 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~---~~F~~~G~I~~i~i~~~~~-----~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~  236 (405)
                      .++|||+|||+++++++|+   ++|++||.|.+|.++.+.+     .++|||||+|.+.++|++|+. |||..|.|++|+
T Consensus        15 ~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~   94 (111)
T 2cpi_A           15 KNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLK   94 (111)
T ss_dssp             SSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEE
Confidence            6799999999999999999   9999999999999976632     567999999999999999999 999999999999


Q ss_pred             EeeccCC
Q psy14559        237 MFHSTQS  243 (405)
Q Consensus       237 V~~a~~~  243 (405)
                      |.+++..
T Consensus        95 V~~a~~k  101 (111)
T 2cpi_A           95 ASLGTTK  101 (111)
T ss_dssp             EESCCCC
T ss_pred             EEecccc
Confidence            9998754

>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.65  E-value=5.6e-16  Score=123.24  Aligned_cols=76  Identities=21%  Similarity=0.359  Sum_probs=71.9

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeeccC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~~  242 (405)
                      .++|||+|||+++++++|+++|++| .|.+|+++.+ ++.++|||||+|.+.++|.+|+.|||..++|+.|.|.+++.
T Consensus        10 ~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a~~   86 (91)
T 2dgw_A           10 CHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREKS   86 (91)
T ss_dssp             CCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEESS
T ss_pred             ccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEECCc
Confidence            6899999999999999999999999 9999999766 67889999999999999999999999999999999999874

>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.65  E-value=2.7e-16  Score=131.88  Aligned_cols=76  Identities=20%  Similarity=0.237  Sum_probs=71.6

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCC---eeEEEEecc-CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeecc
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGT---VNYIRFCTR-ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHST  241 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~---I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~  241 (405)
                      .++|||+|||+++|+++|+++|+.||.   |.+|+++.+ .++++|||||+|.+.++|++|+.+||..|+|+.|+|.+++
T Consensus        17 ~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a~   96 (118)
T 2db1_A           17 GYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVFKSH   96 (118)
T ss_dssp             CCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEEEEEC
T ss_pred             CcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence            689999999999999999999999999   899999755 6788999999999999999999999999999999999875

>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B

Probab=99.65  E-value=8e-16  Score=127.72  Aligned_cols=76  Identities=25%  Similarity=0.340  Sum_probs=71.2

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~  242 (405)
                      .++|||+|||+++++++|+++|++||.|.+|.++.+ +.++|||||+|.+.++|.+|+. |||..+.|+.|+|.+++.
T Consensus         8 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~   84 (115)
T 3lqv_A            8 NRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT-PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA   84 (115)
T ss_dssp             CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS-TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence            689999999999999999999999999999999764 4569999999999999999999 999999999999999863

>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A

Probab=99.65  E-value=3.7e-16  Score=133.24  Aligned_cols=77  Identities=18%  Similarity=0.289  Sum_probs=72.7

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~  242 (405)
                      .++|||+|||+++++++|+++|++||.|.+|+++.+  ++.++|||||+|.+.++|.+|+. |||..|.|++|+|.+++.
T Consensus        46 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~~  125 (129)
T 2kxn_B           46 NCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSIT  125 (129)
T ss_dssp             SSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCCSS
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecC
Confidence            689999999999999999999999999999999765  57899999999999999999999 999999999999999863

>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.65  E-value=6.2e-16  Score=130.04  Aligned_cols=77  Identities=14%  Similarity=0.219  Sum_probs=70.0

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hC--CceeCCeeEEEeeccC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LN--GTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-ln--g~~l~g~~i~V~~a~~  242 (405)
                      .++|||+|||+++|+++|+++|++||.|.+|+++.+    ||||||+|.+.++|.+|+. |+  +..|.|++|+|.+++.
T Consensus        31 s~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~  106 (119)
T 2ad9_A           31 SRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNH  106 (119)
T ss_dssp             CSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSS
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccC
Confidence            689999999999999999999999999999999764    7999999999999999998 77  4689999999999986


Q ss_pred             CCCC
Q psy14559        243 SIQK  246 (405)
Q Consensus       243 ~~~~  246 (405)
                      ...+
T Consensus       107 k~~~  110 (119)
T 2ad9_A          107 KELK  110 (119)
T ss_dssp             SSCC
T ss_pred             CCCC
Confidence            5433

>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.65  E-value=1.4e-16  Score=129.81  Aligned_cols=76  Identities=26%  Similarity=0.495  Sum_probs=72.0

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST  241 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~  241 (405)
                      .++|||+|||+++++++|+++|++||.|.++.++.+  ++.++|||||+|.+.++|.+|+. |||..+.|+.|+|.++.
T Consensus         8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~   86 (104)
T 1p1t_A            8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA   86 (104)
T ss_dssp             HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred             ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence            689999999999999999999999999999999765  67789999999999999999998 99999999999999986

>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A

Probab=99.65  E-value=1.3e-15  Score=139.95  Aligned_cols=75  Identities=21%  Similarity=0.336  Sum_probs=69.7

Q ss_pred             CcEEEEeCCC-CCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCC
Q psy14559        166 RRTLVAINIE-ESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQS  243 (405)
Q Consensus       166 ~rtvfV~NLp-~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~  243 (405)
                      .++|||+||| +.+++++|+++|++||.|.+|+++.+   .+|||||+|.+.++|..|++ |||..+.|++|+|.+++..
T Consensus         4 ~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~---~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~   80 (205)
T 3tyt_A            4 SPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS---KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQP   80 (205)
T ss_dssp             CSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT---STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCS
T ss_pred             CCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC---CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCC
Confidence            6799999999 89999999999999999999999653   58999999999999999998 9999999999999998643

>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.65  E-value=1.1e-15  Score=121.29  Aligned_cols=72  Identities=21%  Similarity=0.324  Sum_probs=68.5

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQS  243 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~  243 (405)
                      .++|||+|||+++++++|+++|++||.|.++.+.      +|||||+|.+.++|.+|+. |||..+.|++|+|.+++..
T Consensus         8 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~   80 (90)
T 2dnq_A            8 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDII------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNK   80 (90)
T ss_dssp             CEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCC
T ss_pred             CeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCC
Confidence            6899999999999999999999999999999995      7899999999999999998 9999999999999999754

>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.65  E-value=3.7e-16  Score=127.31  Aligned_cols=78  Identities=19%  Similarity=0.244  Sum_probs=73.1

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhc-CCCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHH-hCCce-eCCeeEEEeecc
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQK-VGTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALK-LNGTN-LKGKTLQMFHST  241 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~-~G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~-lng~~-l~g~~i~V~~a~  241 (405)
                      .++|||+|||+++|+++|+++|++ ||.|.+|.++.+ ++.++|||||+|.+.++|.+|+. |||.. +.|++|+|.++.
T Consensus         9 ~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a~   88 (104)
T 2dhg_A            9 EYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAI   88 (104)
T ss_dssp             CCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBCC
T ss_pred             CcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEcc
Confidence            679999999999999999999999 999999999766 77889999999999999999999 99999 999999999986


Q ss_pred             CC
Q psy14559        242 QS  243 (405)
Q Consensus       242 ~~  243 (405)
                      ..
T Consensus        89 ~~   90 (104)
T 2dhg_A           89 PK   90 (104)
T ss_dssp             CC
T ss_pred             CC
Confidence            44

>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.65  E-value=4.9e-16  Score=128.76  Aligned_cols=75  Identities=19%  Similarity=0.213  Sum_probs=70.2

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeecc
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHST  241 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~  241 (405)
                      ..+|||+|||+++|+++|+++|++| .|.+|+|+.+ .|+++|||||+|.+.++|.+|+.+||..|+||.|.|..+.
T Consensus        16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~   91 (109)
T 2dnn_A           16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPAT   91 (109)
T ss_dssp             HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence            5799999999999999999999999 8999999765 6789999999999999999999999999999999998764

>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A

Probab=99.65  E-value=2.3e-16  Score=135.45  Aligned_cols=78  Identities=23%  Similarity=0.371  Sum_probs=73.3

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~  242 (405)
                      .++|||+|||+++|+++|+++|++||.|.+|.++.+  ++.++|||||+|.+.++|.+|+. |||..|.|++|+|.+++.
T Consensus        47 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~  126 (135)
T 2lea_A           47 MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARY  126 (135)
T ss_dssp             CCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence            679999999999999999999999999999999765  67899999999999999999998 999999999999999874


Q ss_pred             C
Q psy14559        243 S  243 (405)
Q Consensus       243 ~  243 (405)
                      .
T Consensus       127 ~  127 (135)
T 2lea_A          127 G  127 (135)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.64  E-value=9e-16  Score=126.06  Aligned_cols=75  Identities=23%  Similarity=0.290  Sum_probs=68.1

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCC--ceeCCeeEEEeeccC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNG--TNLKGKTLQMFHSTQ  242 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng--~~l~g~~i~V~~a~~  242 (405)
                      .++|||+|||+++++++|+++|++||.|.+|.++.    .||||||+|.+.++|.+|+. |++  ..+.|++|.|++++.
T Consensus        15 ~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~----~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~   90 (104)
T 1wex_A           15 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP----FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTS   90 (104)
T ss_dssp             CSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET----TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSS
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC----CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccC
Confidence            68999999999999999999999999999999864    38999999999999999998 765  459999999999976


Q ss_pred             CC
Q psy14559        243 SI  244 (405)
Q Consensus       243 ~~  244 (405)
                      ..
T Consensus        91 ~~   92 (104)
T 1wex_A           91 KR   92 (104)
T ss_dssp             SS
T ss_pred             cc
Confidence            53

>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.64  E-value=9.1e-16  Score=120.23  Aligned_cols=72  Identities=17%  Similarity=0.297  Sum_probs=67.8

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-h-CCceeCCeeEEEeecc
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-L-NGTNLKGKTLQMFHST  241 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-l-ng~~l~g~~i~V~~a~  241 (405)
                      .++|||+|||+++++++|+++|++||.|.++.+..    ++|||||+|.+.++|..|+. | +|..+.|++|+|++++
T Consensus        12 ~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~----~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak   85 (85)
T 2ytc_A           12 ITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ----RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR   85 (85)
T ss_dssp             CCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG----GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred             ccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC----CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence            68999999999999999999999999999999965    47999999999999999999 8 9999999999999874

>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.64  E-value=9.9e-17  Score=125.91  Aligned_cols=76  Identities=16%  Similarity=0.274  Sum_probs=70.8

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST  241 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~  241 (405)
                      .++|||+|||+++++++|+++|++||.|.++.++.+  ++.++|||||+|.+.++|.+|+. |||..+.|+.|++.+++
T Consensus         5 ~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~   83 (85)
T 1x4e_A            5 SSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS   83 (85)
T ss_dssp             CCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred             CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence            689999999999999999999999999999999765  67889999999999999999999 99999999999887654

>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.64  E-value=2.2e-16  Score=129.14  Aligned_cols=77  Identities=12%  Similarity=0.250  Sum_probs=71.0

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeeccCC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQS  243 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~~~  243 (405)
                      .++|||+|||+++|+++|+++|++||. .+|+|+.+ +++++|||||+|.+.++|++|+.+|+..|+|+.|.|..+...
T Consensus        15 ~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~~~~   92 (102)
T 1wez_A           15 GHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNSTA   92 (102)
T ss_dssp             SCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEECCC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECCCC
Confidence            689999999999999999999999995 49998765 778999999999999999999999999999999999988743

>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.64  E-value=3.4e-16  Score=126.17  Aligned_cols=77  Identities=17%  Similarity=0.201  Sum_probs=70.6

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~  242 (405)
                      .++|||+|||+++++++|+++|++||.|..+.++.+  ++.++|||||+|.+.++|++|+. |||..|.|++|+|+++..
T Consensus        15 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~   94 (98)
T 2cqp_A           15 PTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGSG   94 (98)
T ss_dssp             SEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESSC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcCC
Confidence            679999999999999999999999999987766543  67789999999999999999997 999999999999999863

>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A

Probab=99.64  E-value=9.4e-17  Score=122.90  Aligned_cols=73  Identities=11%  Similarity=0.225  Sum_probs=68.2

Q ss_pred             EEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeec
Q psy14559        168 TLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHS  240 (405)
Q Consensus       168 tvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a  240 (405)
                      ||||+|||+++++++|+++|++||.|.++.++.+  ++.++|||||+|.+.++|.+|+.++|..+.|++|.|+.+
T Consensus         1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a   75 (75)
T 1iqt_A            1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA   75 (75)
T ss_dssp             CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred             CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence            5899999999999999999999999999998765  578899999999999999999999999999999999864

>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A

Probab=99.64  E-value=2e-16  Score=126.63  Aligned_cols=76  Identities=17%  Similarity=0.200  Sum_probs=70.3

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST  241 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~  241 (405)
                      .++|||+|||+++++++|+++|++||.|..+.++.+  ++.++|||||+|.+.++|.+|+. |||..+.|++|+|.++.
T Consensus        15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~   93 (95)
T 2ek1_A           15 PTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS   93 (95)
T ss_dssp             CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence            579999999999999999999999999988877543  67789999999999999999998 99999999999999876

>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.64  E-value=1.7e-15  Score=123.24  Aligned_cols=77  Identities=12%  Similarity=0.294  Sum_probs=71.6

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeeccCC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQS  243 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~~~  243 (405)
                      .++|||+|||+++++++|+++|++||.|.+|.++.+  ++.++|||||+|.+.++|.+|+. ++..+.|+.|.|.++...
T Consensus        15 ~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~l~v~~a~~~   93 (103)
T 2cqg_A           15 TSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRWCDCKLPNSK   93 (103)
T ss_dssp             CCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTEEEEEECCCTT
T ss_pred             CCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH-cCCeeCCeEEEEEecCCC
Confidence            679999999999999999999999999999999765  57889999999999999999999 578999999999998754

>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}

Probab=99.64  E-value=8.6e-17  Score=127.62  Aligned_cols=76  Identities=18%  Similarity=0.413  Sum_probs=69.4

Q ss_pred             cEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCC
Q psy14559        167 RTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQS  243 (405)
Q Consensus       167 rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~  243 (405)
                      ++|||+|||+++++++|+++|++||.|.++.++.+  ++.++|||||+|.+.+ |..|+. |||..++|++|+|+++...
T Consensus         2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~   80 (90)
T 2ki2_A            2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK   80 (90)
T ss_dssp             EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred             cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence            58999999999999999999999999999999765  5789999999999999 999998 9999999999999998743

>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A

Probab=99.64  E-value=4.3e-16  Score=129.50  Aligned_cols=74  Identities=22%  Similarity=0.344  Sum_probs=69.1

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCC-CeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVG-TVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST  241 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G-~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~  241 (405)
                      ..+|||+|||+++++++|+++|++|| .|..+.+..  ..++|||||+|.+.++|++|+. |||..|.|+.|+|..++
T Consensus        28 ~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~--~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~  103 (111)
T 2jvr_A           28 RYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT--RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDD  103 (111)
T ss_dssp             CEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS--CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc--CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence            67999999999999999999999999 999998853  3579999999999999999998 99999999999999986

>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.64  E-value=8.9e-16  Score=127.26  Aligned_cols=76  Identities=16%  Similarity=0.245  Sum_probs=70.5

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCCC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQSI  244 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~~  244 (405)
                      .++|||+|||+++++++|+++|++||.|.+|.++    .++|||||+|.+.++|..|+. |||..+.|++|.|++++...
T Consensus        10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~   85 (111)
T 1whx_A           10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLP----EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGV   85 (111)
T ss_dssp             EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECC----SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETTT
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEe----CCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCCc
Confidence            6799999999999999999999999999999885    368999999999999999998 99999999999999997654


Q ss_pred             C
Q psy14559        245 Q  245 (405)
Q Consensus       245 ~  245 (405)
                      .
T Consensus        86 ~   86 (111)
T 1whx_A           86 F   86 (111)
T ss_dssp             T
T ss_pred             c
Confidence            3

>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.64  E-value=1.9e-16  Score=121.74  Aligned_cols=73  Identities=19%  Similarity=0.241  Sum_probs=68.2

Q ss_pred             cEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q psy14559        167 RTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHS  240 (405)
Q Consensus       167 rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a  240 (405)
                      ++|||+|||+++++++|+++|++||.|.++.++.+  ++.++|||||+|.+.++|.+|+. ++ ..++|++|+|+.+
T Consensus         1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a   76 (77)
T 1uaw_A            1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA   76 (77)
T ss_dssp             CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence            47999999999999999999999999999999765  57899999999999999999999 77 9999999999875

>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A

Probab=99.64  E-value=7.3e-16  Score=127.21  Aligned_cols=72  Identities=21%  Similarity=0.376  Sum_probs=68.6

Q ss_pred             cCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559        165 IRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       165 ~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~  242 (405)
                      ..++|||+|||+++++++|+++|++||.|.+|.+.      +|||||+|.+.++|.+|+. |||..++|+.|+|.+++.
T Consensus        30 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~  102 (108)
T 2jvo_A           30 SNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKL  102 (108)
T ss_dssp             SCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSC
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence            37899999999999999999999999999999996      7999999999999999998 999999999999999874

>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}

Probab=99.64  E-value=5.8e-16  Score=131.78  Aligned_cols=76  Identities=18%  Similarity=0.271  Sum_probs=69.8

Q ss_pred             CcEEEEeCCCCCCCHHHHH----HHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q psy14559        166 RRTLVAINIEESVSPQELV----DFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHS  240 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~----~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a  240 (405)
                      .++|||+|||+.+++++|+    ++|++||.|.+|.+.. ++.++|||||+|.+.++|..|+. |||..|.|++|+|.++
T Consensus        29 ~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~-~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a  107 (127)
T 2a3j_A           29 SQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL-SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFS  107 (127)
T ss_dssp             CSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC-CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEEC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc-CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEc
Confidence            6799999999999999876    6999999999998753 57789999999999999999998 9999999999999998


Q ss_pred             cC
Q psy14559        241 TQ  242 (405)
Q Consensus       241 ~~  242 (405)
                      +.
T Consensus       108 ~~  109 (127)
T 2a3j_A          108 ET  109 (127)
T ss_dssp             CC
T ss_pred             cC
Confidence            73

>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A

Probab=99.64  E-value=1.1e-15  Score=139.53  Aligned_cols=151  Identities=12%  Similarity=0.117  Sum_probs=100.9

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~  242 (405)
                      .++|||+|||+++|+++|+++|++||.|.+|+++.+  ++.++|||||+|.+.++|.+|+. |||..+.|+.|.|.++..
T Consensus        28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~  107 (216)
T 2qfj_A           28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN  107 (216)
T ss_dssp             HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSC
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCC
Confidence            679999999999999999999999999999999765  67899999999999999999999 999999999999988753


Q ss_pred             CCCCCCCCChHHHHHHHHHHHH--------------HHHHhhhhhhhccCcccCcccccccCCCCCceEEEEEEEeeehh
Q psy14559        243 SIQKPEAKSNEAAQREIEEAMS--------------RVKEAQNMISAAIDPVIGILSKDKKKSHSPVRHLVIVLIVVDVA  308 (405)
Q Consensus       243 ~~~~p~~~~~~~~~~e~~~~~k--------------~~~~~~~~~s~~~ep~~~~~~~dk~~~~s~~~~~~~~~~~~d~~  308 (405)
                      ...     ..... ........              ...+...+++...+.....+.+++..+++  ++++++.|.....
T Consensus       108 ~~~-----~~~~~-~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~--~g~afV~F~~~~~  179 (216)
T 2qfj_A          108 IGQ-----AQPII-DQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKH--KGYGFIEYEKAQS  179 (216)
T ss_dssp             CGG-----GHHHH-HHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCE--EEEEEEEESSHHH
T ss_pred             ccc-----cchhh-hhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCc--CceEEEEecCHHH
Confidence            210     00000 00000000              00112222221111122233445444444  4566666777777


Q ss_pred             hHHHhhhCCCcceeee
Q psy14559        309 LDLALEIGDDLEVVVR  324 (405)
Q Consensus       309 ~~~al~~~~~~~~~~~  324 (405)
                      +++||+..++..+.++
T Consensus       180 A~~A~~~l~g~~~~g~  195 (216)
T 2qfj_A          180 SQDAVSSMNLFDLGGQ  195 (216)
T ss_dssp             HHHHHHHHTTCBCSSS
T ss_pred             HHHHHHHccCCEeCCc
Confidence            8999998777666554

>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C

Probab=99.64  E-value=2.5e-16  Score=138.10  Aligned_cols=145  Identities=17%  Similarity=0.184  Sum_probs=100.2

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeeccCC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQS  243 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~~~  243 (405)
                      .++|||+|||+++|+++|+++|++||.|.+|+++.+  ++.++|||||+|.+.++|..|+. ++..+.|+.|.|..+...
T Consensus         3 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~i~v~~~~~~   81 (167)
T 2cjk_A            3 SCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK-TQHILDGKVIDPKRAIPR   81 (167)
T ss_dssp             GGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH-SCCEETTEECCCEECCCH
T ss_pred             CcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh-cccccCCeEcccccccch
Confidence            689999999999999999999999999999999765  67899999999999999999998 467999999999887522


Q ss_pred             CCCCC-------CCChHHHHHHHHHHHHHHHHhhhhhhhccCcccCcccccccCCCCCceEEEEEEEeeehhhHHHhhhC
Q psy14559        244 IQKPE-------AKSNEAAQREIEEAMSRVKEAQNMISAAIDPVIGILSKDKKKSHSPVRHLVIVLIVVDVALDLALEIG  316 (405)
Q Consensus       244 ~~~p~-------~~~~~~~~~e~~~~~k~~~~~~~~~s~~~ep~~~~~~~dk~~~~s~~~~~~~~~~~~d~~~~~al~~~  316 (405)
                      .....       ..+......++.+.+..+          .+.....+..++..+++++++|  +.+....++++|++ .
T Consensus        82 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~----------G~i~~~~i~~~~~~g~~~g~af--V~f~~~~~a~~A~~-~  148 (167)
T 2cjk_A           82 DEQDKTGKIFVGGIGPDVRPKEFEEFFSQW----------GTIIDAQLMLDKDTGQSRGFGF--VTYDSADAVDRVCQ-N  148 (167)
T ss_dssp             HHHHHCEEEEEEEECTTCCHHHHHHHHHTT----------SCCSEEECCCSSSSSTTSEEEE--EEESSHHHHHHHHH-C
T ss_pred             hhccCCCeEEECCCCCCCCHHHHHHHHHhC----------ccEEEEEEEEcCCCCccceEEE--EEECCHHHHHHHHh-C
Confidence            10000       001111223333333221          1222233445555666665554  45677777889998 4


Q ss_pred             CCcceeee
Q psy14559        317 DDLEVVVR  324 (405)
Q Consensus       317 ~~~~~~~~  324 (405)
                      +++.+.++
T Consensus       149 ~~~~~~g~  156 (167)
T 2cjk_A          149 KFIDFKDR  156 (167)
T ss_dssp             SEECSSSS
T ss_pred             CCEEeCCe
Confidence            55555544

>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.64  E-value=2.4e-15  Score=119.94  Aligned_cols=72  Identities=26%  Similarity=0.369  Sum_probs=68.0

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQS  243 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~  243 (405)
                      .++|||+|||+++++++|+++|++||.|.+|.+.      ++||||+|.+.++|.+|+. |||..+.|+.|+|++++..
T Consensus        10 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~   82 (92)
T 2dgt_A           10 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIV------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR   82 (92)
T ss_dssp             SEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCC
Confidence            7899999999999999999999999999999984      5599999999999999998 9999999999999999754

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*

Probab=99.63  E-value=5.3e-16  Score=158.18  Aligned_cols=78  Identities=17%  Similarity=0.300  Sum_probs=73.4

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~  242 (405)
                      .++|||+|||+.+|+++|+++|++||.|..|.|+.+  ++.++|||||+|.+.++|.+||. |||..|.|+.|.|.+++.
T Consensus       102 ~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~  181 (437)
T 3pgw_S          102 FKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERG  181 (437)
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeCC
Confidence            579999999999999999999999999999999765  67899999999999999999997 999999999999999975


Q ss_pred             C
Q psy14559        243 S  243 (405)
Q Consensus       243 ~  243 (405)
                      .
T Consensus       182 ~  182 (437)
T 3pgw_S          182 R  182 (437)
T ss_pred             C
Confidence            4

>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*

Probab=99.63  E-value=8e-16  Score=129.79  Aligned_cols=78  Identities=21%  Similarity=0.336  Sum_probs=73.2

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~  242 (405)
                      .++|||+|||+++|+++|+++|++||.|.+|.++.+  ++.++|||||+|.+.++|.+|+. |||..|.|+.|+|+++..
T Consensus        22 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~  101 (126)
T 3ex7_B           22 GWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFV  101 (126)
T ss_dssp             SEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESEE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEecC
Confidence            679999999999999999999999999999999765  67889999999999999999998 999999999999999874


Q ss_pred             C
Q psy14559        243 S  243 (405)
Q Consensus       243 ~  243 (405)
                      .
T Consensus       102 ~  102 (126)
T 3ex7_B          102 R  102 (126)
T ss_dssp             S
T ss_pred             C
Confidence            3

>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A

Probab=99.63  E-value=1.6e-15  Score=122.58  Aligned_cols=71  Identities=23%  Similarity=0.326  Sum_probs=67.7

Q ss_pred             CcEEEEeCCCC-CCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559        166 RRTLVAINIEE-SVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       166 ~rtvfV~NLp~-~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~  242 (405)
                      .++|||+|||+ ++++++|+++|++||.|.++++      ++|||||+|.+.++|.+|+. |||..+.|++|+|++++.
T Consensus        22 ~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~   94 (97)
T 2xnq_A           22 KSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI------KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSS   94 (97)
T ss_dssp             TCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE------CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCC
T ss_pred             CCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE------eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCC
Confidence            78999999998 9999999999999999999998      38999999999999999999 999999999999999863

>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}

Probab=99.63  E-value=1.8e-15  Score=129.51  Aligned_cols=75  Identities=23%  Similarity=0.328  Sum_probs=70.3

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHS  240 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a  240 (405)
                      .++|||+|||+++++++|+++|++||.|.+++++.+  ++.++|||||+|.+.++|.+|+. |||..|.|++|+|.+|
T Consensus        63 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A  140 (140)
T 2ku7_A           63 KRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA  140 (140)
T ss_dssp             CCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred             CcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence            789999999999999999999999999999999765  67899999999999999999997 9999999999999875

>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A

Probab=99.63  E-value=3.6e-16  Score=134.65  Aligned_cols=76  Identities=18%  Similarity=0.221  Sum_probs=71.5

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCC---eeEEEEecc-CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeecc
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGT---VNYIRFCTR-ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHST  241 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~---I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~  241 (405)
                      .++|||+|||+++|+++|+++|++||.   |.+|+++.+ .++++|||||+|.+.++|++|+.+||..|+|+.|.|..+.
T Consensus        44 ~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V~~a~  123 (136)
T 2hgl_A           44 GFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVFKSH  123 (136)
T ss_dssp             TCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEEEECC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEEEECC
Confidence            689999999999999999999999999   899999765 6789999999999999999999999999999999999875

>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.63  E-value=1.7e-15  Score=120.25  Aligned_cols=72  Identities=28%  Similarity=0.416  Sum_probs=68.0

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQS  243 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~  243 (405)
                      .++|||+|||+++|+++|+++|++||.|.++.++      ++||||+|.+.++|.+|+. |||..+.|++|+|.+++..
T Consensus         9 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~   81 (90)
T 2dnp_A            9 TWKIFVGNVSAACTSQELRSLFERRGRVIECDVV------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKG   81 (90)
T ss_dssp             SCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCC
Confidence            6899999999999999999999999999999995      5599999999999999998 9999999999999999754

>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.63  E-value=1.2e-15  Score=125.31  Aligned_cols=78  Identities=17%  Similarity=0.184  Sum_probs=71.4

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCC-eeEEEEe-cc--CCCCCcEEEEEECCHHHHHHHHH-hC--CceeCCeeEEEe
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGT-VNYIRFC-TR--ENDTNKYALVEFSDQACVIPALK-LN--GTNLKGKTLQMF  238 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~-I~~i~i~-~~--~~~~rg~afV~F~~~e~A~~Al~-ln--g~~l~g~~i~V~  238 (405)
                      .++|||+|||+++++++|+++|++||. |.++.++ .+  ++.++|||||+|.+.++|..|+. ||  +..+.|++|+|.
T Consensus         8 ~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~   87 (109)
T 2dis_A            8 NCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVD   87 (109)
T ss_dssp             SEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEE
T ss_pred             CCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEE
Confidence            689999999999999999999999998 9999987 44  45789999999999999999999 85  599999999999


Q ss_pred             eccCC
Q psy14559        239 HSTQS  243 (405)
Q Consensus       239 ~a~~~  243 (405)
                      +++..
T Consensus        88 ~a~~~   92 (109)
T 2dis_A           88 WAEPE   92 (109)
T ss_dssp             ESCSS
T ss_pred             EcCCC
Confidence            98743

>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}

Probab=99.62  E-value=1.1e-15  Score=124.02  Aligned_cols=72  Identities=14%  Similarity=0.221  Sum_probs=68.5

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST  241 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~  241 (405)
                      .++|||+|||+++++++|+++|++||.|.++++.    .++|||||+|.+.++|.+|+. |||..++|+.|+|.+++
T Consensus        27 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~   99 (101)
T 2la4_A           27 VTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY----PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK   99 (101)
T ss_dssp             CCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred             CCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe----cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence            6899999999999999999999999999999985    568999999999999999998 99999999999999886

>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.62  E-value=5e-15  Score=119.65  Aligned_cols=72  Identities=26%  Similarity=0.418  Sum_probs=67.8

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcC--CCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKV--GTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~--G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~  242 (405)
                      .++|||+|||+++++++|+++|++|  |.|.++.+      .+|||||+|.+.++|.+|+. |||..+.|++|+|.+++.
T Consensus        15 ~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~   88 (99)
T 2cpd_A           15 VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKK------IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP   88 (99)
T ss_dssp             CCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEE------CSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCC
T ss_pred             cCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE------eCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCC
Confidence            6899999999999999999999999  99999987      37899999999999999999 999999999999999874


Q ss_pred             C
Q psy14559        243 S  243 (405)
Q Consensus       243 ~  243 (405)
                      .
T Consensus        89 ~   89 (99)
T 2cpd_A           89 V   89 (99)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.62  E-value=6.8e-16  Score=126.34  Aligned_cols=74  Identities=14%  Similarity=0.205  Sum_probs=67.6

Q ss_pred             CcEEEEeCCCC-CCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCC--ceeCCeeEEEeecc
Q psy14559        166 RRTLVAINIEE-SVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNG--TNLKGKTLQMFHST  241 (405)
Q Consensus       166 ~rtvfV~NLp~-~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng--~~l~g~~i~V~~a~  241 (405)
                      .++|||+|||+ ++|+++|+++|++||.|.+|.++.    .+|||||+|.+.++|..|+. |||  ..|.|++|.|++++
T Consensus        15 ~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~----~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~   90 (102)
T 1x4d_A           15 RRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILN----KINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQ   90 (102)
T ss_dssp             CCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECS----SSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEEC
T ss_pred             CCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEc----CCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECC
Confidence            78999999999 999999999999999999999964    36899999999999999998 876  46999999999997


Q ss_pred             CC
Q psy14559        242 QS  243 (405)
Q Consensus       242 ~~  243 (405)
                      ..
T Consensus        91 ~~   92 (102)
T 1x4d_A           91 KY   92 (102)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.62  E-value=2.6e-15  Score=123.56  Aligned_cols=72  Identities=21%  Similarity=0.282  Sum_probs=68.6

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCC-----eeEEEee
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKG-----KTLQMFH  239 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g-----~~i~V~~  239 (405)
                      .++|||+|||+++++++|+++|++||.|.+|.++.+     |||||+|.+.++|++|+. |||..|.|     +.|+|.+
T Consensus        15 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~   89 (108)
T 1x4c_A           15 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKV   89 (108)
T ss_dssp             CCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-----TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-----CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEe
Confidence            689999999999999999999999999999999765     899999999999999999 99999999     9999999


Q ss_pred             ccC
Q psy14559        240 STQ  242 (405)
Q Consensus       240 a~~  242 (405)
                      ++.
T Consensus        90 a~~   92 (108)
T 1x4c_A           90 DGP   92 (108)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            874

>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.62  E-value=2.1e-15  Score=122.19  Aligned_cols=75  Identities=21%  Similarity=0.360  Sum_probs=68.7

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQS  243 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~  243 (405)
                      .++|||+|||+++++++|+++|++||.|   +++.+ ++.++|||||+|.+.++|.+|+. |||..|.|+.|+|.+++..
T Consensus        15 ~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~   91 (101)
T 2fc9_A           15 SKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPR   91 (101)
T ss_dssp             CSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCC
Confidence            7899999999999999999999999987   45444 77889999999999999999999 9999999999999999754

>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}

Probab=99.62  E-value=1.2e-15  Score=124.01  Aligned_cols=80  Identities=18%  Similarity=0.269  Sum_probs=65.3

Q ss_pred             CCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEe
Q psy14559          9 VKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVT   88 (405)
Q Consensus         9 ~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv   88 (405)
                      ....+|||+|||+++|+++|+++|+.||+|.+|++..   +..+++++|||||+|.+.++|+.|+..+|+..+++..+.+
T Consensus        17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~---d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V   93 (99)
T 4fxv_A           17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIR---DKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKV   93 (99)
T ss_dssp             CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEE---CSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeee---cCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence            3457899999999999999999999999999999943   3356889999999999999999999755555555555555


Q ss_pred             ecC
Q psy14559         89 PYN   91 (405)
Q Consensus        89 ~~~   91 (405)
                      .++
T Consensus        94 ~~A   96 (99)
T 4fxv_A           94 SYA   96 (99)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            443

>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.62  E-value=2.6e-15  Score=123.56  Aligned_cols=74  Identities=23%  Similarity=0.399  Sum_probs=69.8

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQS  243 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~  243 (405)
                      .++|||+|||+++++++|+++|++||.|.+|+++.+    +|||||+|.+.++|.+|+. |||..+.|++|+|.+++..
T Consensus        25 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~   99 (109)
T 1x4g_A           25 NCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKES   99 (109)
T ss_dssp             CCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred             CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCC
Confidence            689999999999999999999999999999999754    8999999999999999997 9999999999999999754

>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...

Probab=99.62  E-value=6e-16  Score=124.33  Aligned_cols=76  Identities=20%  Similarity=0.304  Sum_probs=70.8

Q ss_pred             CcEEEEeCCCCCCCHHHHH----HHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q psy14559        166 RRTLVAINIEESVSPQELV----DFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHS  240 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~----~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a  240 (405)
                      .++|||+|||+++++++|+    ++|++||.|.+|.+.. ++.++|||||+|.+.++|..|+. |||..+.|++|+|.++
T Consensus         8 ~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a   86 (97)
T 1nu4_A            8 NHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR-SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYA   86 (97)
T ss_dssp             CSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH-HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc-CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence            6899999999999999999    9999999999998863 45678999999999999999998 9999999999999998


Q ss_pred             cC
Q psy14559        241 TQ  242 (405)
Q Consensus       241 ~~  242 (405)
                      +.
T Consensus        87 ~~   88 (97)
T 1nu4_A           87 KT   88 (97)
T ss_dssp             SS
T ss_pred             cC
Confidence            73

>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}

Probab=99.62  E-value=3.2e-16  Score=128.92  Aligned_cols=76  Identities=17%  Similarity=0.237  Sum_probs=71.2

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCC---eeEEEEecc-CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeecc
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGT---VNYIRFCTR-ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHST  241 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~---I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~  241 (405)
                      .++|||+|||+++|+++|+++|+.||.   |.+|+++.+ .|.++|||||+|.+.++|.+|+.+||..++|+.|+|.++.
T Consensus        11 ~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~   90 (107)
T 2lmi_A           11 VFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEIN   90 (107)
T ss_dssp             CCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCCEECC
T ss_pred             ccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEEEECC
Confidence            789999999999999999999999998   899999755 5789999999999999999999999999999999998875

>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A

Probab=99.62  E-value=1.7e-15  Score=144.56  Aligned_cols=77  Identities=19%  Similarity=0.297  Sum_probs=71.6

Q ss_pred             CcEEEEeCCCCCCCHHHHH----HHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q psy14559        166 RRTLVAINIEESVSPQELV----DFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHS  240 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~----~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a  240 (405)
                      .++|||+|||+++++++|+    ++|++||.|.+|++.. ++.++|||||+|.+.++|.+|+. |||..+.|+.|+|.++
T Consensus         9 ~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a   87 (282)
T 3pgw_A            9 NHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR-SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYA   87 (282)
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC-CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEEe
Confidence            7899999999999999976    8999999999999875 67789999999999999999997 9999999999999998


Q ss_pred             cCC
Q psy14559        241 TQS  243 (405)
Q Consensus       241 ~~~  243 (405)
                      +..
T Consensus        88 ~~~   90 (282)
T 3pgw_A           88 KTD   90 (282)
T ss_pred             ccC
Confidence            643

>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X

Probab=99.62  E-value=2.5e-15  Score=131.61  Aligned_cols=79  Identities=19%  Similarity=0.285  Sum_probs=73.7

Q ss_pred             cCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559        165 IRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST  241 (405)
Q Consensus       165 ~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~  241 (405)
                      ..++|||+|||+++|+++|+++|++||.|.+|.|+.+  ++.++|||||+|.+.++|.+|+. |||..|.|++|+|.+++
T Consensus        38 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~  117 (156)
T 1h2v_Z           38 KSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDA  117 (156)
T ss_dssp             TCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEES
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence            3689999999999999999999999999999999766  57789999999999999999999 99999999999999997


Q ss_pred             CC
Q psy14559        242 QS  243 (405)
Q Consensus       242 ~~  243 (405)
                      ..
T Consensus       118 ~~  119 (156)
T 1h2v_Z          118 GF  119 (156)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}

Probab=99.62  E-value=3.4e-16  Score=133.41  Aligned_cols=78  Identities=14%  Similarity=0.246  Sum_probs=71.9

Q ss_pred             cCcEEEEeCCCCCCCHHHHHHHHhcCCCeeE--EEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCc----eeCCeeE
Q psy14559        165 IRRTLVAINIEESVSPQELVDFFQKVGTVNY--IRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGT----NLKGKTL  235 (405)
Q Consensus       165 ~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~--i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~----~l~g~~i  235 (405)
                      ..++|||+|||+++|+++|+++|++||.|..  |+|+.+  ++.++|||||+|.+. +|.+|+. |||.    .+.|++|
T Consensus        22 ~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l  100 (131)
T 2m2b_A           22 ANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTI  100 (131)
T ss_dssp             CCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEE
Confidence            3789999999999999999999999999976  998766  688999999999999 9999998 9999    9999999


Q ss_pred             EEeeccCC
Q psy14559        236 QMFHSTQS  243 (405)
Q Consensus       236 ~V~~a~~~  243 (405)
                      +|.+++..
T Consensus       101 ~V~~a~~~  108 (131)
T 2m2b_A          101 NVEFAKGS  108 (131)
T ss_dssp             CCEECCCS
T ss_pred             EEEECCCC
Confidence            99998643

>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.61  E-value=2.6e-15  Score=121.30  Aligned_cols=74  Identities=19%  Similarity=0.336  Sum_probs=69.4

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQS  243 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~  243 (405)
                      .++|||+|||+++++++|+++|++||.|.+|.+..    ++|||||+|.+.++|.+|+. |||..+.|++|+|.+++..
T Consensus        15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~----~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~   89 (99)
T 2cpj_A           15 RSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK----DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHS   89 (99)
T ss_dssp             TTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEET----TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEec----CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCC
Confidence            68999999999999999999999999999999964    48999999999999999997 9999999999999999754

>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A

Probab=99.61  E-value=3.4e-15  Score=131.38  Aligned_cols=143  Identities=20%  Similarity=0.269  Sum_probs=101.4

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcC----C-------CeeEEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCceeCCee
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKV----G-------TVNYIRFCTRENDTNKYALVEFSDQACVIPALKLNGTNLKGKT  234 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~----G-------~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~  234 (405)
                      .++|||+|||+++|+++|+++|++|    |       .|.++.+    +.++|||||+|.+.++|.+|+.+||..+.|++
T Consensus         4 ~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~----~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~   79 (172)
T 2g4b_A            4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI----NQDKNFAFLEFRSVDETTQAMAFDGIIFQGQS   79 (172)
T ss_dssp             GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEE----ETTTTEEEEEESSHHHHHHHGGGTTCEETTEE
T ss_pred             ccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEe----cCCCCEEEEEeCCHHHHHHHHHhCCcEecCce
Confidence            6899999999999999999999999    7       7778877    45689999999999999999999999999999


Q ss_pred             EEEeeccCCCCCCCCC-------ChHHHHHHHHHHHHHHHHhhhhhhhccCcccCcccccccCCCCCceEEEEEEEeeeh
Q psy14559        235 LQMFHSTQSIQKPEAK-------SNEAAQREIEEAMSRVKEAQNMISAAIDPVIGILSKDKKKSHSPVRHLVIVLIVVDV  307 (405)
Q Consensus       235 i~V~~a~~~~~~p~~~-------~~~~~~~e~~~~~k~~~~~~~~~s~~~ep~~~~~~~dk~~~~s~~~~~~~~~~~~d~  307 (405)
                      |+|.++......+...       +......++.+.+..+..        +  ....+.+++.++++  +|++++.+....
T Consensus        80 i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~--------v--~~v~i~~~~~~g~~--~g~afV~f~~~~  147 (172)
T 2g4b_A           80 LKIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGP--------L--KAFNLVKDSATGLS--KGYAFCEYVDIN  147 (172)
T ss_dssp             CEEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSC--------E--EEEEEEECTTTCSE--EEEEEEEESSTT
T ss_pred             eeecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCC--------c--eEEEEEecCCCCCc--ceEEEEEeCCHH
Confidence            9999886442211111       112233444444432211        1  11223344434443  456666677777


Q ss_pred             hhHHHhhhCCCcceeee
Q psy14559        308 ALDLALEIGDDLEVVVR  324 (405)
Q Consensus       308 ~~~~al~~~~~~~~~~~  324 (405)
                      .+++|++..++..+.++
T Consensus       148 ~A~~A~~~l~g~~~~g~  164 (172)
T 2g4b_A          148 VTDQAIAGLNGMQLGDK  164 (172)
T ss_dssp             HHHHHHHHHTTCEETTE
T ss_pred             HHHHHHHHcCCCEECCe
Confidence            78999998777776655

>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}

Probab=99.61  E-value=1.8e-15  Score=125.44  Aligned_cols=83  Identities=10%  Similarity=0.125  Sum_probs=68.8

Q ss_pred             CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeE
Q psy14559          7 APVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALV   86 (405)
Q Consensus         7 ~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~   86 (405)
                      ++.+.++|||+|||+++|+++|+++|++||+|.+|+| +.  |..+++++|||||+|.+.++|+.|++.+|...+++..+
T Consensus         2 g~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i-~~--d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i   78 (110)
T 3s8s_A            2 GQIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEI-LL--HPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNII   78 (110)
T ss_dssp             CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEE-EE--CTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred             CCCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEE-EE--CCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence            4567899999999999999999999999999999999 43  33568899999999999999999997655555555555


Q ss_pred             EeecCC
Q psy14559         87 VTPYNS   92 (405)
Q Consensus        87 vv~~~~   92 (405)
                      .+.++.
T Consensus        79 ~V~~a~   84 (110)
T 3s8s_A           79 HAQLDI   84 (110)
T ss_dssp             EEEECS
T ss_pred             EEEECC
Confidence            555544

>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}

Probab=99.61  E-value=1.1e-15  Score=123.83  Aligned_cols=74  Identities=22%  Similarity=0.279  Sum_probs=69.7

Q ss_pred             cEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCC
Q psy14559        167 RTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQS  243 (405)
Q Consensus       167 rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~  243 (405)
                      ++|||+|||+++|+++|+++|++||.|.+|.++.+   ++|||||+|.+.++|.+|+. |||..+.|++|+|.+++..
T Consensus         1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~   75 (101)
T 2hvz_A            1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN---PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM   75 (101)
T ss_dssp             CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS---SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence            47999999999999999999999999999999765   78999999999999999999 9999999999999998743

>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1

Probab=99.61  E-value=9.7e-16  Score=122.99  Aligned_cols=75  Identities=20%  Similarity=0.435  Sum_probs=69.4

Q ss_pred             cCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559        165 IRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       165 ~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~  242 (405)
                      ..++|||+|||+++++++|+++|++||.|..+   ..++.++|||||+|.+.++|.+|+. |||..+.|++|+|.++..
T Consensus        15 ~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~   90 (96)
T 1fjc_A           15 AARTLLAKNLSFNITEDELKEVFEDALEIRLV---SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE   90 (96)
T ss_dssp             GGGEEEEESCCSSCCHHHHHHHHCSEEEECCE---EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSS
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe---CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCC
Confidence            36899999999999999999999999988777   4477889999999999999999999 999999999999999864

>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.60  E-value=9.8e-16  Score=129.27  Aligned_cols=76  Identities=17%  Similarity=0.211  Sum_probs=69.5

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEE-ec-cCCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeecc
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRF-CT-RENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHST  241 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i-~~-~~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~  241 (405)
                      .++|||+|||+++|+++|+++|++||.|.++.+ .. .++.++|||||+|.+.++|.+|+.|||..|+|+.|.|.++.
T Consensus        25 ~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a~  102 (124)
T 1wel_A           25 GFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPIT  102 (124)
T ss_dssp             CCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEEC
T ss_pred             CcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECC
Confidence            689999999999999999999999999988444 33 37788999999999999999999999999999999999976

>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.60  E-value=2.7e-15  Score=120.83  Aligned_cols=73  Identities=15%  Similarity=0.256  Sum_probs=68.3

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeC--CeeEEEeeccC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLK--GKTLQMFHSTQ  242 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~--g~~i~V~~a~~  242 (405)
                      .++|||+|||+++++++|+++|++||.|.+|.+..+    +|||||+|.+.++|++|+. |||..+.  |++|+|.+++.
T Consensus        17 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~   92 (97)
T 1why_A           17 TTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKS   92 (97)
T ss_dssp             CSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCC
Confidence            578999999999999999999999999999998542    7899999999999999999 9999999  99999999874

>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.60  E-value=2.4e-15  Score=124.57  Aligned_cols=76  Identities=17%  Similarity=0.193  Sum_probs=70.8

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHH-hCCcee--------CCeeE
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALK-LNGTNL--------KGKTL  235 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~-lng~~l--------~g~~i  235 (405)
                      .++|||+|||+++++++|+++|++||.|.+|+++.+ ++.++|||||+|.+.++|.+|+. |||..+        .|++|
T Consensus        25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~l  104 (114)
T 1x5o_A           25 PTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPL  104 (114)
T ss_dssp             TTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSCB
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCce
Confidence            689999999999999999999999999999999766 67789999999999999999999 999999        57789


Q ss_pred             EEeecc
Q psy14559        236 QMFHST  241 (405)
Q Consensus       236 ~V~~a~  241 (405)
                      .|.++.
T Consensus       105 ~v~~a~  110 (114)
T 1x5o_A          105 LCKFSG  110 (114)
T ss_dssp             EEEECC
T ss_pred             eEEccC
Confidence            998876

>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.60  E-value=8.1e-16  Score=130.17  Aligned_cols=76  Identities=21%  Similarity=0.275  Sum_probs=70.0

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCe----eEEEEecc-CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeec
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTV----NYIRFCTR-ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHS  240 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I----~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a  240 (405)
                      ..+|||+|||+++|+++|+++|++||.|    .+|.|+.+ +++++|||||+|.+.++|.+|+..|+..|+||.|.|..+
T Consensus        23 ~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V~~a  102 (123)
T 2dha_A           23 QVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRS  102 (123)
T ss_dssp             CCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECCEEE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEEC
Confidence            6799999999999999999999999975    68988765 788999999999999999999999999999999999886


Q ss_pred             c
Q psy14559        241 T  241 (405)
Q Consensus       241 ~  241 (405)
                      .
T Consensus       103 ~  103 (123)
T 2dha_A          103 T  103 (123)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.60  E-value=3e-15  Score=120.58  Aligned_cols=74  Identities=20%  Similarity=0.323  Sum_probs=67.8

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~  242 (405)
                      .++|||+|||+++++++|+++|++||.|. +.++.  +.++|||||+|.+.++|.+|+. |||..+.|++|+|.+++.
T Consensus        19 ~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~   93 (97)
T 2e5j_A           19 AADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW--QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQ   93 (97)
T ss_dssp             CCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE--ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCC
T ss_pred             CCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc--CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence            67999999999999999999999999996 55553  4678999999999999999998 999999999999999873

>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.60  E-value=2.6e-15  Score=124.45  Aligned_cols=76  Identities=22%  Similarity=0.351  Sum_probs=69.6

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCe----eEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTV----NYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHS  240 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I----~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a  240 (405)
                      .++|||+|||+++|+++|+++|++||.|    ..+.+.  ++.++|||||+|.+.++|.+|+. |||..+.|++|+|.++
T Consensus        25 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~--~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a  102 (115)
T 2cpx_A           25 NKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM--TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG  102 (115)
T ss_dssp             CSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE--CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC--CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence            6899999999999999999999999999    455444  78899999999999999999998 9999999999999999


Q ss_pred             cCC
Q psy14559        241 TQS  243 (405)
Q Consensus       241 ~~~  243 (405)
                      +..
T Consensus       103 ~~~  105 (115)
T 2cpx_A          103 KNK  105 (115)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            755

>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A

Probab=99.60  E-value=1.4e-15  Score=123.55  Aligned_cols=76  Identities=21%  Similarity=0.370  Sum_probs=71.4

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeeccC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~~  242 (405)
                      .++|||+|||+++++++|+++|++||.|.+|+++.+ ++.++|||||+|.+.++|.+|+. +|..++|+.|.|.++..
T Consensus         9 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a~~   85 (102)
T 2xs2_A            9 PNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPAIR   85 (102)
T ss_dssp             EEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEEEE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEECCc
Confidence            689999999999999999999999999999999765 67789999999999999999999 99999999999998863

>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A

Probab=99.60  E-value=4.9e-15  Score=120.70  Aligned_cols=72  Identities=19%  Similarity=0.489  Sum_probs=67.9

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQS  243 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~  243 (405)
                      .++|||+|||+++|+++|+++|++||.|.+|.++      ++||||+|.+.++|.+|+. |||..|.|++|+|.+++..
T Consensus        11 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~   83 (103)
T 2dgu_A           11 VKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPP   83 (103)
T ss_dssp             CCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCC
Confidence            6799999999999999999999999999999984      6799999999999999999 9999999999999999744

>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1

Probab=99.59  E-value=4.4e-16  Score=126.31  Aligned_cols=77  Identities=19%  Similarity=0.207  Sum_probs=69.8

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEec--cCCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeeccCC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCT--RENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQS  243 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~--~~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~~~  243 (405)
                      .++|||+|||+++|+++|+++|++||.|.. .++.  .++.++|||||+|.+.++|.+|++|||..+.|+.|+|.+++..
T Consensus        17 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~   95 (101)
T 1fj7_A           17 PFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGR   95 (101)
T ss_dssp             SEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECCSCC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEcCCC
Confidence            679999999999999999999999999887 3433  2678999999999999999999999999999999999998743

>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A

Probab=99.59  E-value=1.7e-15  Score=128.71  Aligned_cols=75  Identities=19%  Similarity=0.259  Sum_probs=69.0

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCee--EEEEecc-CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeecc
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVN--YIRFCTR-ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHST  241 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~--~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~  241 (405)
                      .++|||+|||+++|+++|+++|++| .|.  +|+|+.+ .|+++|||||+|.+.++|++|+.+++..|+||.|.|..+.
T Consensus        42 ~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~a~  119 (126)
T 2hgm_A           42 DGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSS  119 (126)
T ss_dssp             CCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEEEC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEECC
Confidence            6789999999999999999999999 576  8988755 6789999999999999999999988899999999998875

>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}

Probab=99.59  E-value=1.1e-15  Score=122.17  Aligned_cols=79  Identities=16%  Similarity=0.185  Sum_probs=67.1

Q ss_pred             CcEEEEcCCCCCCCHHHHHHHhccCC-ceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhc-cCCccccceeEEe
Q psy14559         11 TKVVQVANIAPQATRDQMQTLFGYLG-KVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHL-TNTVFIDRALVVT   88 (405)
Q Consensus        11 ~~tLfVgNLp~~vTeedLr~lFs~~G-~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~-~n~~~~~~~~~vv   88 (405)
                      +.+|||+|||+++|+++|+++|+.|| +|.+|+| +.  +..++.++|||||+|.+.++|+.|++. .+...+++..+.+
T Consensus         1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i-~~--d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V   77 (91)
T 2lxi_A            1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRL-MR--NKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSM   77 (91)
T ss_dssp             CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCS-SS--CSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEE-Ee--cCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEE
Confidence            47999999999999999999999999 8999998 43  345788999999999999999999975 4666666666666


Q ss_pred             ecCC
Q psy14559         89 PYNS   92 (405)
Q Consensus        89 ~~~~   92 (405)
                      .++.
T Consensus        78 ~~a~   81 (91)
T 2lxi_A           78 HYSD   81 (91)
T ss_dssp             ECCC
T ss_pred             EEcC
Confidence            6654

>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.59  E-value=2.1e-15  Score=120.40  Aligned_cols=73  Identities=25%  Similarity=0.372  Sum_probs=67.0

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCC-eeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCC-ceeCCeeEEEeeccC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGT-VNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNG-TNLKGKTLQMFHSTQ  242 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~-I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng-~~l~g~~i~V~~a~~  242 (405)
                      .++|||+|||+++|+++|+++|++||. |..+.+.     ++|||||+|.+.++|.+|+. ||| ..+.|++|+|.+++.
T Consensus         8 ~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~   82 (93)
T 2cqh_A            8 MNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-----KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVS   82 (93)
T ss_dssp             CCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-----ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCC
T ss_pred             CcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-----CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccC
Confidence            679999999999999999999999999 6666663     48999999999999999998 999 999999999999975


Q ss_pred             C
Q psy14559        243 S  243 (405)
Q Consensus       243 ~  243 (405)
                      .
T Consensus        83 ~   83 (93)
T 2cqh_A           83 K   83 (93)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.59  E-value=1.6e-15  Score=126.15  Aligned_cols=74  Identities=12%  Similarity=0.179  Sum_probs=67.4

Q ss_pred             CcEEEEeCCCCC-CCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hC--CceeCCeeEEEeecc
Q psy14559        166 RRTLVAINIEES-VSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LN--GTNLKGKTLQMFHST  241 (405)
Q Consensus       166 ~rtvfV~NLp~~-~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-ln--g~~l~g~~i~V~~a~  241 (405)
                      .++|||+|||++ +++++|+++|++||.|.+|.++    +++|||||+|.+.++|..|+. ||  +..|.|++|+|++++
T Consensus        25 ~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~----~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~  100 (112)
T 1x4f_A           25 GRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILM----RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSE  100 (112)
T ss_dssp             CCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEE----TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEEC
T ss_pred             CCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEe----cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECc
Confidence            789999999998 9999999999999999999995    358999999999999999998 75  467999999999997


Q ss_pred             CC
Q psy14559        242 QS  243 (405)
Q Consensus       242 ~~  243 (405)
                      ..
T Consensus       101 ~~  102 (112)
T 1x4f_A          101 KY  102 (112)
T ss_dssp             SC
T ss_pred             cc
Confidence            43

>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}

Probab=99.59  E-value=3.2e-15  Score=120.27  Aligned_cols=72  Identities=22%  Similarity=0.312  Sum_probs=68.1

Q ss_pred             CcEEEEeCCCC-CCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCC
Q psy14559        166 RRTLVAINIEE-SVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQS  243 (405)
Q Consensus       166 ~rtvfV~NLp~-~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~  243 (405)
                      .++|||+|||+ ++++++|+++|++||.|.++.+.      +|||||+|.+.++|..|+. |||..+.|++|+|.+++..
T Consensus        10 ~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~   83 (96)
T 2kvi_A           10 KSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSN   83 (96)
T ss_dssp             CEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECC
T ss_pred             CCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcC
Confidence            68999999999 99999999999999999999983      7999999999999999999 9999999999999999743

>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A

Probab=99.59  E-value=3.6e-15  Score=132.07  Aligned_cols=77  Identities=25%  Similarity=0.362  Sum_probs=72.7

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~  242 (405)
                      .++|||+|||+.+++++|+++|++||.|..|.++.+  ++.++|||||+|.+.++|..|+. |||..|.|++|.|.++..
T Consensus        72 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~  151 (165)
T 1rk8_A           72 GWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFV  151 (165)
T ss_dssp             CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecC
Confidence            679999999999999999999999999999999765  67889999999999999999998 999999999999999863

>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.59  E-value=7.4e-15  Score=117.61  Aligned_cols=75  Identities=20%  Similarity=0.317  Sum_probs=66.1

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeeccCC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQS  243 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~~~  243 (405)
                      .++|||+|||+++++++|+++|++||.|.+|.+...++.   ||||+|.+.++|.+|+.|||..|.|+.|.|.++...
T Consensus         8 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~~~   82 (94)
T 2e5g_A            8 LRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGV---FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPREQK   82 (94)
T ss_dssp             CCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCC---EEEEEESSHHHHHHHHTCSCCEETTEECCCBCSCCS
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCc---EEEEEECCHHHHHHHHhcCCeEECCEEEEEEECCcC
Confidence            579999999999999999999999999999822222333   999999999999999999999999999999988644

>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C

Probab=99.59  E-value=2.3e-15  Score=140.73  Aligned_cols=76  Identities=18%  Similarity=0.266  Sum_probs=71.9

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCC--CeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVG--TVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHS  240 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G--~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a  240 (405)
                      .++|||+|||+++|+++|+++|++||  .|.+|+|+.+  +++++|||||+|.+.++|.+||. |||..|.|+.|+|.++
T Consensus        68 ~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a  147 (229)
T 3q2s_C           68 RIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPV  147 (229)
T ss_dssp             -CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEEC
T ss_pred             ccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEEC
Confidence            67999999999999999999999999  9999999876  78899999999999999999999 9999999999999998


Q ss_pred             c
Q psy14559        241 T  241 (405)
Q Consensus       241 ~  241 (405)
                      +
T Consensus       148 ~  148 (229)
T 3q2s_C          148 N  148 (229)
T ss_dssp             C
T ss_pred             C
Confidence            6

>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A

Probab=99.59  E-value=4.9e-15  Score=130.41  Aligned_cols=144  Identities=14%  Similarity=0.186  Sum_probs=100.0

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CC--CCCcEEEEEECCHHHHHHHHH-hCCceeC---CeeEEE
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--EN--DTNKYALVEFSDQACVIPALK-LNGTNLK---GKTLQM  237 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~--~~rg~afV~F~~~e~A~~Al~-lng~~l~---g~~i~V  237 (405)
                      .++|||+|||+++|+++|+++|++||+|.+|+++.+  ++  .++|||||+|.+.++|..|+. |||..+.   ++.+.+
T Consensus         3 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~   82 (175)
T 3nmr_A            3 AIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQM   82 (175)
T ss_dssp             CEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred             ceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEE
Confidence            689999999999999999999999999999999765  33  689999999999999999998 9998776   678888


Q ss_pred             eeccCCCCCCC--------CCChHHHHHHHHHHHHHHHHhhhhhhhccCcccCcccccccCCCCCceEEEEEEEeeehhh
Q psy14559        238 FHSTQSIQKPE--------AKSNEAAQREIEEAMSRVKEAQNMISAAIDPVIGILSKDKKKSHSPVRHLVIVLIVVDVAL  309 (405)
Q Consensus       238 ~~a~~~~~~p~--------~~~~~~~~~e~~~~~k~~~~~~~~~s~~~ep~~~~~~~dk~~~~s~~~~~~~~~~~~d~~~  309 (405)
                      .++......+.        ..+......++.+.+..+..        +  ....+.++. .+  ..+|++++.|.....+
T Consensus        83 ~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~--------i--~~v~~~~~~-~g--~~~g~afV~f~~~~~A  149 (175)
T 3nmr_A           83 KPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQ--------I--EECRILRGP-DG--LSRGCAFVTFTTRAMA  149 (175)
T ss_dssp             EECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSC--------E--EEEEEEECT-TS--CEEEEEEEEESSHHHH
T ss_pred             ccccccccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCC--------E--EEEEEEECC-CC--CEEEEEEEEECCHHHH
Confidence            87754322111        01112233444444332211        1  112223332 23  3456777777888888


Q ss_pred             HHHhhhCCCccee
Q psy14559        310 DLALEIGDDLEVV  322 (405)
Q Consensus       310 ~~al~~~~~~~~~  322 (405)
                      ++||+..++..+.
T Consensus       150 ~~A~~~l~g~~~~  162 (175)
T 3nmr_A          150 QTAIKAMHQAQTM  162 (175)
T ss_dssp             HHHHHHHTTSCCC
T ss_pred             HHHHHHhcCCccc
Confidence            9999877665544

>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A

Probab=99.59  E-value=7.1e-15  Score=115.71  Aligned_cols=79  Identities=11%  Similarity=0.117  Sum_probs=66.5

Q ss_pred             cCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCcccccee
Q psy14559          6 VAPVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRAL   85 (405)
Q Consensus         6 ~~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~   85 (405)
                      ....+.++|||+|||+++|+++|+++|++||+|.+|++.. +  ..+++++|||||+|.+.++|+.|+.+++..+.++.+
T Consensus         6 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~-~--~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i   82 (87)
T 3s7r_A            6 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKM-D--PNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVI   82 (87)
T ss_dssp             -CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEE-C--TTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEE
T ss_pred             CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEee-c--CCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEE
Confidence            3467889999999999999999999999999999999943 2  246889999999999999999999887766555544


Q ss_pred             EE
Q psy14559         86 VV   87 (405)
Q Consensus        86 ~v   87 (405)
                      .+
T Consensus        83 ~v   84 (87)
T 3s7r_A           83 DP   84 (87)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A

Probab=99.58  E-value=9.5e-15  Score=120.39  Aligned_cols=71  Identities=24%  Similarity=0.356  Sum_probs=67.7

Q ss_pred             CcEEEEeCCCCC-CCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559        166 RRTLVAINIEES-VSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       166 ~rtvfV~NLp~~-~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~  242 (405)
                      .++|||+|||++ +++++|+++|++||.|.+|.+      ++|||||+|.+.++|.+|+. |||..+.|++|+|.+++.
T Consensus        27 ~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~   99 (110)
T 1wf1_A           27 NSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGE   99 (110)
T ss_dssp             SSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCC
T ss_pred             CcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence            579999999999 999999999999999999998      58999999999999999997 999999999999999874

>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A

Probab=99.58  E-value=4.4e-16  Score=137.81  Aligned_cols=139  Identities=18%  Similarity=0.185  Sum_probs=102.6

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEec-cCCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeeccCCC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCT-RENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQSI  244 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~-~~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~~~~  244 (405)
                      .++|||+|||+++|+++|+++|++||.+..+.+.. .++.++|||||+|.+.++|.+|++|||..+.|++|+|.++....
T Consensus        13 ~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~~~~~   92 (175)
T 1fje_B           13 PFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGRD   92 (175)
T ss_dssp             SEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECCCCSS
T ss_pred             CcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecCCCcc
Confidence            78999999999999999999999999776633322 36789999999999999999999999999999999999886321


Q ss_pred             CCCCCCChHHHHHHHHHHHHHHHHhhhhhhhccCcccCcccccccCCCCCceEEEEEEEeeehhhHHHhhhCCCcceeee
Q psy14559        245 QKPEAKSNEAAQREIEEAMSRVKEAQNMISAAIDPVIGILSKDKKKSHSPVRHLVIVLIVVDVALDLALEIGDDLEVVVR  324 (405)
Q Consensus       245 ~~p~~~~~~~~~~e~~~~~k~~~~~~~~~s~~~ep~~~~~~~dk~~~~s~~~~~~~~~~~~d~~~~~al~~~~~~~~~~~  324 (405)
                      ..                                            .......+.+..+..+..-+...++       ..
T Consensus        93 ~~--------------------------------------------~~~~~~~l~v~nlp~~~t~~~l~~~-------F~  121 (175)
T 1fje_B           93 SK--------------------------------------------KVRAARTLLAKNLSFNITEDELKEV-------FE  121 (175)
T ss_dssp             CS--------------------------------------------TTGGGGEEEEESCCSSCCHHHHHHH-------CT
T ss_pred             cc--------------------------------------------ccccCCEEEEeCCCCCCCHHHHHHH-------HH
Confidence            00                                            0112234555555544442322222       22


Q ss_pred             eeccccccccccccceEEEEEecCccccccc
Q psy14559        325 DVGHVREEDQDHVVDVLCLVIVRDPHVARDV  355 (405)
Q Consensus       325 ~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (405)
                      .+|.|+........-|.|.|.|.+++.|...
T Consensus       122 ~~g~v~~~~~~~~~~g~afV~f~~~~~A~~A  152 (175)
T 1fje_B          122 DALEIRLVSQDGKSKGIAYIEFKSEADAEKN  152 (175)
T ss_dssp             TCSEEEEECSSSSCCSEEEEECSSHHHHHHH
T ss_pred             hcCeEEEecCCCCCceEEEEEECCHHHHHHH
Confidence            3677776655566789999999999998764

>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A

Probab=99.58  E-value=5.6e-15  Score=132.97  Aligned_cols=153  Identities=17%  Similarity=0.236  Sum_probs=103.8

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcC----C-------CeeEEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCceeCCee
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKV----G-------TVNYIRFCTRENDTNKYALVEFSDQACVIPALKLNGTNLKGKT  234 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~----G-------~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~  234 (405)
                      .++|||+|||+++|+++|+++|++|    |       .|.++.+    +.++|||||+|.+.++|.+|+.|||..+.|++
T Consensus         4 ~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~----~~~~g~afV~F~~~~~A~~Al~l~g~~~~g~~   79 (198)
T 2yh0_A            4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI----NQDKNFAFLEFRSVDETTQAMAFDGIIFQGQS   79 (198)
T ss_dssp             CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE----ETTTTEEEEEESCSHHHHHHGGGTTEEETTEE
T ss_pred             eeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe----cCCCCEEEEEeCCHHHHHHHHHhcCCEEcCce
Confidence            6899999999999999999999999    5       6666666    56789999999999999999999999999999


Q ss_pred             EEEeeccCCCCCCCCCChHHHHHHHHHHHHHHHHhhhhhhhccCcccCcccccccCCCCCceEEEEEEEeeehhhHHHhh
Q psy14559        235 LQMFHSTQSIQKPEAKSNEAAQREIEEAMSRVKEAQNMISAAIDPVIGILSKDKKKSHSPVRHLVIVLIVVDVALDLALE  314 (405)
Q Consensus       235 i~V~~a~~~~~~p~~~~~~~~~~e~~~~~k~~~~~~~~~s~~~ep~~~~~~~dk~~~~s~~~~~~~~~~~~d~~~~~al~  314 (405)
                      |+|.++......+......                .     ...|.     ............+++..+..+..-+.   
T Consensus        80 i~v~~~~~~~~~~~~~~~~----------------~-----~~~~~-----~~~~~~~~~~~~l~v~nl~~~~~~~~---  130 (198)
T 2yh0_A           80 LKIRRPHDYQPLPGMSENP----------------S-----VYVPG-----VVSTVVPDSAHKLFIGGLPNYLNDDQ---  130 (198)
T ss_dssp             EEEECCCCCCCCCCSSSCS----------------S-----CCCTT-----SSCCCSSCCCCEEEEECCCTTCCHHH---
T ss_pred             EEEeCCCCCCCCCCCcCCC----------------c-----CCCCC-----CccCCCCCCCCEEEEeCCCCCCCHHH---
Confidence            9999886542221110000                0     00000     00011223445666666655544222   


Q ss_pred             hCCCcceeeeeecccccccc-----ccccceEEEEEecCccccccc
Q psy14559        315 IGDDLEVVVRDVGHVREEDQ-----DHVVDVLCLVIVRDPHVARDV  355 (405)
Q Consensus       315 ~~~~~~~~~~~~g~v~~~~~-----~~~~~~~~~~~~~~~~~~~~~  355 (405)
                          +.-...++|.|....-     ....-|.|.|.|.+++.|...
T Consensus       131 ----l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A  172 (198)
T 2yh0_A          131 ----VKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQA  172 (198)
T ss_dssp             ----HHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHH
T ss_pred             ----HHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHH
Confidence                2233345666655322     344578999999999999764

>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A

Probab=99.58  E-value=6.8e-15  Score=115.60  Aligned_cols=70  Identities=23%  Similarity=0.441  Sum_probs=65.8

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcC----C-------CeeEEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCceeCCee
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKV----G-------TVNYIRFCTRENDTNKYALVEFSDQACVIPALKLNGTNLKGKT  234 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~----G-------~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~  234 (405)
                      .++|||+|||+++++++|+++|++|    |       .|.++.+.    .++|||||+|.+.++|.+|+.|||..+.|++
T Consensus         6 ~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~----~~kg~afV~f~~~~~a~~A~~l~g~~~~g~~   81 (87)
T 2hzc_A            6 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN----QDKNFAFLEFRSVDETTQAMAFDGIIFQGQS   81 (87)
T ss_dssp             GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEC----SSSSEEEEEESSHHHHHHHGGGTTCEETTEE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEec----CCCcEEEEEcCCHHHHHHHHhcCCCEECCeE
Confidence            6899999999999999999999999    8       99999985    3489999999999999999999999999999


Q ss_pred             EEEee
Q psy14559        235 LQMFH  239 (405)
Q Consensus       235 i~V~~  239 (405)
                      |+|++
T Consensus        82 l~V~r   86 (87)
T 2hzc_A           82 LKIRR   86 (87)
T ss_dssp             CEEEC
T ss_pred             EEEeC
Confidence            99975

>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}

Probab=99.58  E-value=2.2e-15  Score=130.06  Aligned_cols=77  Identities=19%  Similarity=0.275  Sum_probs=69.7

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEE--------EEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEE
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYI--------RFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQ  236 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i--------~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~  236 (405)
                      .++|||+|||+++|+++|+++|++||.|..+        ++ ..++.++|||||+|.+.++|.+|+. |||..|.|++|.
T Consensus        45 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~  123 (143)
T 3egn_A           45 NCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRL-MKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMV  123 (143)
T ss_dssp             CSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEE-EEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEe-ccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence            6799999999999999999999999998764        32 2368899999999999999999999 999999999999


Q ss_pred             EeeccCC
Q psy14559        237 MFHSTQS  243 (405)
Q Consensus       237 V~~a~~~  243 (405)
                      |.+++..
T Consensus       124 V~~a~~~  130 (143)
T 3egn_A          124 VQFARSA  130 (143)
T ss_dssp             EEECCCS
T ss_pred             EEECCCC
Confidence            9999744

>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.58  E-value=2.2e-14  Score=115.54  Aligned_cols=72  Identities=19%  Similarity=0.297  Sum_probs=67.2

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQS  243 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~  243 (405)
                      .++|||+||  ++|+++|+++|++||.|.+|.+    +.++|||||+|.+.++|.+|+. |||..+.|++|+|.+++..
T Consensus        15 ~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i----~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~   87 (97)
T 1x5p_A           15 GNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSM----DPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ   87 (97)
T ss_dssp             CSEEEEECS--SCCHHHHHHHHTTTSCEEEEEE----ETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSC
T ss_pred             CCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEe----cCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCC
Confidence            689999996  8999999999999999999998    3678999999999999999997 9999999999999998754

>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A

Probab=99.57  E-value=8.1e-16  Score=132.92  Aligned_cols=76  Identities=12%  Similarity=0.249  Sum_probs=70.7

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeeccC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~~  242 (405)
                      .++|||+|||+++|+++|+++|++|| |.+|+|+.+ .++++|||||+|.+.++|++|+.+|+..|.|+.|.|..+..
T Consensus        46 ~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~~  122 (139)
T 2hgn_A           46 GHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNST  122 (139)
T ss_dssp             CCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECCC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECCC
Confidence            67999999999999999999999999 779998765 67899999999999999999999999999999999998864

>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A

Probab=99.57  E-value=4.2e-15  Score=117.65  Aligned_cols=73  Identities=15%  Similarity=0.249  Sum_probs=68.6

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQS  243 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~  243 (405)
                      .++|||+|||+++++++|+++|++| .|.++++.    .++|||||+|.+.++|.+|+. |||..+.|++|+|+++...
T Consensus         5 ~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~   78 (88)
T 1wg1_A            5 SSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD   78 (88)
T ss_dssp             CCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence            6789999999999999999999999 99999984    678999999999999999999 9999999999999998654

>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}

Probab=99.57  E-value=3.4e-15  Score=120.58  Aligned_cols=84  Identities=15%  Similarity=0.203  Sum_probs=67.5

Q ss_pred             cCCCCCcEEEEcCCCCCCCHHHHHHHhccCCc--eEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCc----
Q psy14559          6 VAPVKTKVVQVANIAPQATRDQMQTLFGYLGK--VEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTV----   79 (405)
Q Consensus         6 ~~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~--I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~----   79 (405)
                      .....-.||||+|||+++|+++|+++|++||.  |.+|++ +.  |..+++++|||||+|.+.++|+.|++.+|..    
T Consensus         4 ~~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i-~~--d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~   80 (95)
T 2lkz_A            4 HHHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRL-IK--DKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPL   80 (95)
T ss_dssp             CSSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEEC-CC--CSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCE
T ss_pred             ccCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEE-Ee--cCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCc
Confidence            34556689999999999999999999999995  668888 43  4467899999999999999999999755442    


Q ss_pred             cccceeEEeecCC
Q psy14559         80 FIDRALVVTPYNS   92 (405)
Q Consensus        80 ~~~~~~~vv~~~~   92 (405)
                      .++++.+.+.++.
T Consensus        81 ~i~Gr~i~V~~Ak   93 (95)
T 2lkz_A           81 KIDGKTIGVDFAK   93 (95)
T ss_dssp             EETTEEEEEEECC
T ss_pred             eECCEEEEEEEcc
Confidence            4666666666543

>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.57  E-value=6.6e-15  Score=120.56  Aligned_cols=77  Identities=14%  Similarity=0.178  Sum_probs=65.6

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      ....++|||+|||+++|+++|+++|+.||+|.+|++ +.+.  . +.++|||||+|.+.++|+.|+.+++..+.++.+.|
T Consensus         8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i-~~d~--~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V   83 (103)
T 1s79_A            8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQM-RRTL--H-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLI   83 (103)
T ss_dssp             CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEE-ECCC--T-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEE
T ss_pred             cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEE-EECC--C-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEE
Confidence            446799999999999999999999999999999999 5443  3 78999999999999999999996555666666555


Q ss_pred             e
Q psy14559         88 T   88 (405)
Q Consensus        88 v   88 (405)
                      .
T Consensus        84 ~   84 (103)
T 1s79_A           84 L   84 (103)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*

Probab=99.56  E-value=1e-14  Score=114.02  Aligned_cols=80  Identities=11%  Similarity=0.154  Sum_probs=65.3

Q ss_pred             CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeE
Q psy14559          7 APVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALV   86 (405)
Q Consensus         7 ~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~   86 (405)
                      ...+.++|||+|||+++|+++|+++|+.||+|.+|++. .+  ..++.++|||||+|.+.++|+.|+..+|...+++..+
T Consensus         3 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~-~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l   79 (85)
T 3mdf_A            3 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIP-LD--YETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTI   79 (85)
T ss_dssp             CCCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECC-EE--TTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred             CCCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEE-EC--CCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence            35688999999999999999999999999999999983 32  2467889999999999999999996545444444444


Q ss_pred             Eee
Q psy14559         87 VTP   89 (405)
Q Consensus        87 vv~   89 (405)
                      .+.
T Consensus        80 ~v~   82 (85)
T 3mdf_A           80 RVN   82 (85)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.56  E-value=1.6e-14  Score=115.19  Aligned_cols=82  Identities=15%  Similarity=0.203  Sum_probs=67.1

Q ss_pred             cCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCcccccee
Q psy14559          6 VAPVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRAL   85 (405)
Q Consensus         6 ~~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~   85 (405)
                      ..+.+.++|||+|||+++|+++|+++|+.||+|.+|++ +.  +..++.++|||||+|.+.++|+.|+..+|...+++..
T Consensus        11 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i-~~--~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~   87 (94)
T 2e5h_A           11 GLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTI-MK--DKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRV   87 (94)
T ss_dssp             SCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEE-CC--CSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEE
T ss_pred             CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEE-Ee--CCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcE
Confidence            34667899999999999999999999999999999999 33  2345788999999999999999999755555555555


Q ss_pred             EEeec
Q psy14559         86 VVTPY   90 (405)
Q Consensus        86 ~vv~~   90 (405)
                      +.+.+
T Consensus        88 l~v~~   92 (94)
T 2e5h_A           88 IKASI   92 (94)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            54443

>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A

Probab=99.55  E-value=4.5e-15  Score=138.07  Aligned_cols=75  Identities=28%  Similarity=0.437  Sum_probs=70.1

Q ss_pred             CcEEEEeCCCC-CCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCC
Q psy14559        166 RRTLVAINIEE-SVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQS  243 (405)
Q Consensus       166 ~rtvfV~NLp~-~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~  243 (405)
                      .++|||+|||+ ++++++|+++|++||.|.+|+++.+.   +|||||+|.+.++|.+|+. |||..+.|+.|.|.+++..
T Consensus        34 ~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~---~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~  110 (229)
T 2adc_A           34 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK---KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ  110 (229)
T ss_dssp             CSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT---SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCC
T ss_pred             CCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC---CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCc
Confidence            68999999999 99999999999999999999997543   7999999999999999998 9999999999999998754

>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.55  E-value=1.9e-14  Score=116.00  Aligned_cols=84  Identities=12%  Similarity=0.163  Sum_probs=68.0

Q ss_pred             cCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCcccccee
Q psy14559          6 VAPVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRAL   85 (405)
Q Consensus         6 ~~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~   85 (405)
                      .+..+.++|||+|||+++|+++|+++|+.||+|.+|++. .  +..++.++|||||+|.+.++|+.|+..+|...+++..
T Consensus         3 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~-~--~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~   79 (99)
T 1whw_A            3 SGSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYP-I--DSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRM   79 (99)
T ss_dssp             CCCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECC-C--CTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCE
T ss_pred             CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEE-e--cCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence            346788999999999999999999999999999999993 3  3346788999999999999999999655555555555


Q ss_pred             EEeecCC
Q psy14559         86 VVTPYNS   92 (405)
Q Consensus        86 ~vv~~~~   92 (405)
                      +.+.++.
T Consensus        80 l~V~~a~   86 (99)
T 1whw_A           80 LHVLPST   86 (99)
T ss_dssp             EEEEECC
T ss_pred             EEEEEcC
Confidence            5555444

>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.55  E-value=1.7e-14  Score=116.96  Aligned_cols=75  Identities=15%  Similarity=0.288  Sum_probs=67.1

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~  242 (405)
                      .++|||+|||+++++++|+++|+.|+   .+.++.+  ++.++|||||+|.+.++|.+|+. |||..|.|+.|+|.+++.
T Consensus        15 ~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~   91 (102)
T 2fc8_A           15 SKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKP   91 (102)
T ss_dssp             CSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred             CCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence            68999999999999999999999885   4555443  67789999999999999999998 999999999999999974


Q ss_pred             C
Q psy14559        243 S  243 (405)
Q Consensus       243 ~  243 (405)
                      .
T Consensus        92 ~   92 (102)
T 2fc8_A           92 K   92 (102)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}

Probab=99.55  E-value=2e-14  Score=114.40  Aligned_cols=70  Identities=21%  Similarity=0.362  Sum_probs=62.1

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCce--eCCeeEEEeecc
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALKLNGTN--LKGKTLQMFHST  241 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~lng~~--l~g~~i~V~~a~  241 (405)
                      ..+|||+|||+++|+++|+++|++||.|.+|+++.+   ++|||||+|.+.++|.+   ++|..  +.|++|.|..+.
T Consensus        11 ~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~---srGfaFV~F~~~~~A~~---~~~~~~~~~g~~v~v~~a~   82 (89)
T 3d2w_A           11 GSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP---FRAFAFVTFADDKVAQS---LCGEDLIIKGISVHISNAE   82 (89)
T ss_dssp             CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS---CCSEEEEEESCHHHHHH---HTTCEEEETTEEEEEEECC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC---CCCEEEEEECCHHHHHH---HcCCCcccCCEEEEEEEcC
Confidence            679999999999999999999999999999999653   79999999999999884   45544  569999999886

>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B

Probab=99.55  E-value=5.2e-15  Score=122.75  Aligned_cols=78  Identities=18%  Similarity=0.306  Sum_probs=63.0

Q ss_pred             CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeE
Q psy14559          7 APVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALV   86 (405)
Q Consensus         7 ~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~   86 (405)
                      .+...++|||+|||+++|+++|+++|+.||.|.+|++ +.+     +.++|||||+|.+.++|..|+..+|+..+++..+
T Consensus         4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i-~~~-----~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l   77 (115)
T 3lqv_A            4 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRV-GNT-----PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYL   77 (115)
T ss_dssp             CTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEE-ECS-----TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBC
T ss_pred             CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-eeC-----CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence            3567899999999999999999999999999999999 332     4459999999999999999998555444444444


Q ss_pred             Eeec
Q psy14559         87 VTPY   90 (405)
Q Consensus        87 vv~~   90 (405)
                      .+.+
T Consensus        78 ~v~~   81 (115)
T 3lqv_A           78 VVLY   81 (115)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4443

>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.55  E-value=1.2e-14  Score=121.02  Aligned_cols=74  Identities=20%  Similarity=0.301  Sum_probs=67.6

Q ss_pred             CcEEEE--eCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCcee-----CCeeEEE
Q psy14559        166 RRTLVA--INIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNL-----KGKTLQM  237 (405)
Q Consensus       166 ~rtvfV--~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l-----~g~~i~V  237 (405)
                      .++|||  |||++++++++|+++|++||.|.+|.++.    .||||||+|.+.++|++|+. |||..+     .|++|.|
T Consensus        25 t~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~----~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v  100 (114)
T 2cq2_A           25 TQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYL  100 (114)
T ss_dssp             CSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT----TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEE
T ss_pred             CCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEE
Confidence            678999  77999999999999999999999998853    48999999999999999998 999998     7899999


Q ss_pred             eeccCC
Q psy14559        238 FHSTQS  243 (405)
Q Consensus       238 ~~a~~~  243 (405)
                      .+++..
T Consensus       101 ~~a~~~  106 (114)
T 2cq2_A          101 NFVEKV  106 (114)
T ss_dssp             EEESCC
T ss_pred             EecccC
Confidence            998744

>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.55  E-value=1.7e-14  Score=115.25  Aligned_cols=82  Identities=15%  Similarity=0.208  Sum_probs=66.3

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      +.+.++|||+|||+++|+++|+++|+.||+|.+|++. .  +..+++++|||||+|.+.++|+.|+..+|...+++..+.
T Consensus         2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~-~--~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~   78 (95)
T 2dnz_A            2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLM-K--DSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMR   78 (95)
T ss_dssp             CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEE-C--CSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred             CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEe-e--cCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Confidence            4678999999999999999999999999999999994 3  334678899999999999999999985444444444444


Q ss_pred             eecCC
Q psy14559         88 TPYNS   92 (405)
Q Consensus        88 v~~~~   92 (405)
                      +.++.
T Consensus        79 V~~a~   83 (95)
T 2dnz_A           79 VGHVT   83 (95)
T ss_dssp             EEESS
T ss_pred             EEEcc
Confidence            44443

>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}

Probab=99.55  E-value=1.1e-14  Score=130.77  Aligned_cols=78  Identities=21%  Similarity=0.306  Sum_probs=73.4

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQS  243 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~  243 (405)
                      .++|||+|||+++++++|+++|++||.|..|.++.+ ++.++|||||+|.+.++|.+|+. |||..|.|+.|+|.++...
T Consensus        88 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~~  167 (177)
T 2f3j_A           88 GAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQ  167 (177)
T ss_dssp             CEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEESSG
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEecCC
Confidence            679999999999999999999999999999999765 67889999999999999999999 9999999999999998754

>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.55  E-value=3.2e-14  Score=114.74  Aligned_cols=82  Identities=13%  Similarity=0.222  Sum_probs=66.7

Q ss_pred             CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeE
Q psy14559          7 APVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALV   86 (405)
Q Consensus         7 ~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~   86 (405)
                      ...+.++|||+|||+++|+++|+++|+.||+|.+|++ +.  +..+++++|||||+|.+.++|+.|+.+++..+.++.+.
T Consensus         6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~--~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~   82 (99)
T 2dgs_A            6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVM-IY--DAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVE   82 (99)
T ss_dssp             CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEE-CC--CTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCE
T ss_pred             CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-Ee--CCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEE
Confidence            3667899999999999999999999999999999999 33  33467889999999999999999999555544455444


Q ss_pred             EeecCC
Q psy14559         87 VTPYNS   92 (405)
Q Consensus        87 vv~~~~   92 (405)
                       +.+..
T Consensus        83 -V~~a~   87 (99)
T 2dgs_A           83 -VKRAE   87 (99)
T ss_dssp             -EEECC
T ss_pred             -EEECC
Confidence             44433

>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.54  E-value=1.7e-14  Score=116.05  Aligned_cols=85  Identities=7%  Similarity=0.122  Sum_probs=67.1

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      ..+.++|||+|||+++|+++|+++|+.||+|.+|++.....+..++.++|||||+|.+.++|+.|+..+|...+++..+.
T Consensus         2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~   81 (98)
T 2cpf_A            2 SSGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLE   81 (98)
T ss_dssp             CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence            45789999999999999999999999999999999943321111347899999999999999999986555555555555


Q ss_pred             eecCC
Q psy14559         88 TPYNS   92 (405)
Q Consensus        88 v~~~~   92 (405)
                      +.+..
T Consensus        82 V~~a~   86 (98)
T 2cpf_A           82 VRISE   86 (98)
T ss_dssp             EECSS
T ss_pred             EEEcc
Confidence            55544

>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0

Probab=99.54  E-value=2e-14  Score=111.84  Aligned_cols=79  Identities=8%  Similarity=0.033  Sum_probs=64.6

Q ss_pred             CcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEeec
Q psy14559         11 TKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTPY   90 (405)
Q Consensus        11 ~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~~   90 (405)
                      +.+|||+|||+++|+++|+++|+.||+|.++++..   +..++.++|||||+|.+.++|+.|+..+|+..+++..+.+.+
T Consensus         1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~---~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~   77 (83)
T 3md1_A            1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMW---DMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINW   77 (83)
T ss_dssp             CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEE---CTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred             CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEE---cCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEe
Confidence            47899999999999999999999999999999943   224688999999999999999999985555445555555554


Q ss_pred             CC
Q psy14559         91 NS   92 (405)
Q Consensus        91 ~~   92 (405)
                      +.
T Consensus        78 a~   79 (83)
T 3md1_A           78 AA   79 (83)
T ss_dssp             CC
T ss_pred             cC
Confidence            43

>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.54  E-value=2.3e-14  Score=114.48  Aligned_cols=81  Identities=14%  Similarity=0.159  Sum_probs=67.5

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      +.+.++|||+|||+++|+++|+++|+.||+|.+|++..   +..++.++|||||+|.+.++|+.|+..+|...+++..+.
T Consensus        12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~---~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~   88 (95)
T 2cqc_A           12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVY---DQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR   88 (95)
T ss_dssp             CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEE---CSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred             CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEE---cCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence            66789999999999999999999999999999999943   224578899999999999999999986665555555555


Q ss_pred             eecC
Q psy14559         88 TPYN   91 (405)
Q Consensus        88 v~~~   91 (405)
                      +.++
T Consensus        89 v~~a   92 (95)
T 2cqc_A           89 VSGP   92 (95)
T ss_dssp             EECC
T ss_pred             EEec
Confidence            5543

>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}

Probab=99.54  E-value=1.4e-14  Score=113.77  Aligned_cols=80  Identities=16%  Similarity=0.256  Sum_probs=64.0

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      ..+.++|||+|||+++|+++|+++|+.||+|.+|++..   +..++.++|||||+|.+.++|+.|+..+|...+++..+.
T Consensus         3 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~   79 (87)
T 3bs9_A            3 LGSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVK---DMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR   79 (87)
T ss_dssp             ---CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE---CTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred             CCCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEe---cCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence            35678999999999999999999999999999999943   224678999999999999999999985555545555544


Q ss_pred             eec
Q psy14559         88 TPY   90 (405)
Q Consensus        88 v~~   90 (405)
                      +.+
T Consensus        80 v~~   82 (87)
T 3bs9_A           80 TNW   82 (87)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            443

>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}

Probab=99.31  E-value=4.5e-16  Score=129.66  Aligned_cols=77  Identities=21%  Similarity=0.448  Sum_probs=71.7

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeE--------EEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCee
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNY--------IRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKT  234 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~--------i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~  234 (405)
                      .++|||+|||+++++++|+++|++||.|.+        |+++.+  ++.++|||||+|.+.++|.+|+. |||..+.|++
T Consensus         7 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~   86 (116)
T 2lcw_A            7 NNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNP   86 (116)
Confidence            679999999999999999999999999998        878654  57889999999999999999999 9999999999


Q ss_pred             EEEeeccC
Q psy14559        235 LQMFHSTQ  242 (405)
Q Consensus       235 i~V~~a~~  242 (405)
                      |+|.+++.
T Consensus        87 l~V~~a~~   94 (116)
T 2lcw_A           87 IKVSFATR   94 (116)
Confidence            99999863

>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}

Probab=99.54  E-value=2.1e-14  Score=114.83  Aligned_cols=79  Identities=15%  Similarity=0.146  Sum_probs=64.3

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      ....++|||+|||+++|+++|+++|+.||+|.+|++ +.+.   .++++|||||+|.+.++|+.|+..+|...+++..+.
T Consensus        13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i-~~~~---~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~   88 (95)
T 2ywk_A           13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTI-CKDR---EGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPIN   88 (95)
T ss_dssp             TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEE-EECT---TSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECE
T ss_pred             CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEE-EECC---CCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEE
Confidence            567799999999999999999999999999999999 4333   377899999999999999999985444444444444


Q ss_pred             eec
Q psy14559         88 TPY   90 (405)
Q Consensus        88 v~~   90 (405)
                      +.+
T Consensus        89 V~~   91 (95)
T 2ywk_A           89 VSG   91 (95)
T ss_dssp             EEC
T ss_pred             EEE
Confidence            443

>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A

Probab=99.54  E-value=3.1e-14  Score=121.25  Aligned_cols=74  Identities=28%  Similarity=0.355  Sum_probs=67.8

Q ss_pred             cEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcE-EEEEECCHHHHHHHHH-hCCceeCC--eeEEEeeccC
Q psy14559        167 RTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKY-ALVEFSDQACVIPALK-LNGTNLKG--KTLQMFHSTQ  242 (405)
Q Consensus       167 rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~-afV~F~~~e~A~~Al~-lng~~l~g--~~i~V~~a~~  242 (405)
                      -.|||+||++.+|+++|+++|++||.|.+|.+..+   ++|| |||+|.+.++|..|++ |||..|.|  +.|+|++++.
T Consensus        29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~---~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~  105 (130)
T 3zzy_A           29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK---NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL  105 (130)
T ss_dssp             EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE---TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSC
T ss_pred             EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC---CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCC
Confidence            36899999999999999999999999999988653   3688 9999999999999999 99999988  8999999975


Q ss_pred             C
Q psy14559        243 S  243 (405)
Q Consensus       243 ~  243 (405)
                      .
T Consensus       106 ~  106 (130)
T 3zzy_A          106 T  106 (130)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.53  E-value=3.3e-14  Score=113.64  Aligned_cols=68  Identities=18%  Similarity=0.235  Sum_probs=62.2

Q ss_pred             EEEEeCCCCCCCHHH----HHHHHhcC-CCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559        168 TLVAINIEESVSPQE----LVDFFQKV-GTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST  241 (405)
Q Consensus       168 tvfV~NLp~~~tee~----L~~~F~~~-G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~  241 (405)
                      +|||+|||+++++++    |+++|++| |+|.+|     ++   |+|||.|.+.++|.+|++ |||..+.||+|+|++++
T Consensus        11 ~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-----tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~   82 (96)
T 2diu_A           11 LLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-----TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTP   82 (96)
T ss_dssp             EEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-----CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSC
T ss_pred             EEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-----ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecC
Confidence            499999999999988    55899999 599998     23   999999999999999998 99999999999999997


Q ss_pred             CC
Q psy14559        242 QS  243 (405)
Q Consensus       242 ~~  243 (405)
                      ..
T Consensus        83 ~~   84 (96)
T 2diu_A           83 KN   84 (96)
T ss_dssp             CS
T ss_pred             CC
Confidence            55

>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.53  E-value=1.2e-14  Score=119.35  Aligned_cols=78  Identities=14%  Similarity=0.217  Sum_probs=63.8

Q ss_pred             cCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhc-c-CCccccc
Q psy14559          6 VAPVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHL-T-NTVFIDR   83 (405)
Q Consensus         6 ~~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~-~-n~~~~~~   83 (405)
                      .++.+.++|||+|||+++|+++|+++|++||+|.+|++. .        .+|||||+|.+.++|+.|+.. + +...+++
T Consensus        11 ~~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~-~--------~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~G   81 (105)
T 1sjq_A           11 GSGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLML-K--------GKNQAFIEMNTEEAANTMVNYYTSVTPVLRG   81 (105)
T ss_dssp             -CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEE-T--------TTTEEEEEESSHHHHHHHHHHHTTSCCEETT
T ss_pred             CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-c--------CCCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence            357789999999999999999999999999999999993 2        279999999999999999974 3 3345555


Q ss_pred             eeEEeecCC
Q psy14559         84 ALVVTPYNS   92 (405)
Q Consensus        84 ~~~vv~~~~   92 (405)
                      ..+.+.++.
T Consensus        82 r~l~V~~A~   90 (105)
T 1sjq_A           82 QPIYIQFSN   90 (105)
T ss_dssp             EECCBCCCS
T ss_pred             EEEEEEEcC
Confidence            555555544

>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A

Probab=99.53  E-value=3.2e-14  Score=112.18  Aligned_cols=76  Identities=22%  Similarity=0.344  Sum_probs=63.0

Q ss_pred             CCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEe
Q psy14559         10 KTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVT   88 (405)
Q Consensus        10 ~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv   88 (405)
                      ..++|||+|||+++|+++|+++|+.||.|.++++. .  +..+++++|||||+|.+.++|+.|+.+++..+.++.+.+.
T Consensus         5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~-~--~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~   80 (89)
T 3ucg_A            5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTIL-C--DKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVI   80 (89)
T ss_dssp             HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEE-E--SCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEE
T ss_pred             cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-e--cCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEE
Confidence            46899999999999999999999999999999994 3  2246788999999999999999999555555555554444

>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.53  E-value=1.9e-14  Score=115.36  Aligned_cols=75  Identities=24%  Similarity=0.221  Sum_probs=67.4

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEE-EeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIR-FCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~-i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~  242 (405)
                      .++|||+|||+++++++|+++|++||.|.+++ ++.+..  .+.|||+|.+.++|.+|+. |||..+.|++|+|.+++.
T Consensus        15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~--~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~   91 (96)
T 2e44_A           15 IRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSE--TAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD   91 (96)
T ss_dssp             CCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSS--SEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred             CCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCC--CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence            67899999999999999999999999999995 665432  3449999999999999998 999999999999999873

>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.53  E-value=2.3e-14  Score=116.50  Aligned_cols=82  Identities=11%  Similarity=0.193  Sum_probs=67.6

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      ..+.++|||+|||+++|+++|+++|+.||+|.+|++. .+  ..++.++|||||+|.+.++|+.|+..+|...+++..+.
T Consensus        12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~-~~--~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~   88 (103)
T 2cq0_A           12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLA-KD--KTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILN   88 (103)
T ss_dssp             CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEE-EC--SSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEe-ec--CCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence            5678999999999999999999999999999999994 32  24678999999999999999999985555555555555


Q ss_pred             eecCC
Q psy14559         88 TPYNS   92 (405)
Q Consensus        88 v~~~~   92 (405)
                      +.++.
T Consensus        89 v~~a~   93 (103)
T 2cq0_A           89 VEWAK   93 (103)
T ss_dssp             EEESS
T ss_pred             EEECC
Confidence            55544

>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B

Probab=99.53  E-value=2.2e-14  Score=115.21  Aligned_cols=81  Identities=19%  Similarity=0.267  Sum_probs=66.3

Q ss_pred             CCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEee
Q psy14559         10 KTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTP   89 (405)
Q Consensus        10 ~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~   89 (405)
                      ++++|||+|||+++|+++|+++|+.||.|.+|++ ..  +..++.++|||||+|.+.++|+.|+..+|+..+++..+.+.
T Consensus         1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i-~~--~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~   77 (96)
T 2x1f_A            1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKM-MF--DPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCG   77 (96)
T ss_dssp             CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEC-CB--CTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred             CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEE-Ee--CCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence            4689999999999999999999999999999999 33  33467889999999999999999997555555555555555


Q ss_pred             cCCC
Q psy14559         90 YNSG   93 (405)
Q Consensus        90 ~~~~   93 (405)
                      ++..
T Consensus        78 ~a~~   81 (96)
T 2x1f_A           78 YSSN   81 (96)
T ss_dssp             ECSC
T ss_pred             EcCC
Confidence            5443

>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A

Probab=99.53  E-value=1.1e-14  Score=121.27  Aligned_cols=71  Identities=21%  Similarity=0.300  Sum_probs=64.3

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCee-----EEEee
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKT-----LQMFH  239 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~-----i~V~~  239 (405)
                      .++|||+|||+++++++|+++|++||+|.+|.++.+     |||||+|.+.++|++|+. |||..|.|+.     |+|..
T Consensus        16 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~   90 (115)
T 3beg_B           16 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKV   90 (115)
T ss_dssp             -CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-----SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEE
T ss_pred             CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-----CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEecc
Confidence            578999999999999999999999999999999654     899999999999999999 9999999998     55555


Q ss_pred             cc
Q psy14559        240 ST  241 (405)
Q Consensus       240 a~  241 (405)
                      +.
T Consensus        91 ~~   92 (115)
T 3beg_B           91 DG   92 (115)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.53  E-value=2e-14  Score=115.93  Aligned_cols=77  Identities=13%  Similarity=0.216  Sum_probs=64.8

Q ss_pred             cCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceE-EEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccce
Q psy14559          6 VAPVKTKVVQVANIAPQATRDQMQTLFGYLGKVE-DLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRA   84 (405)
Q Consensus         6 ~~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~-~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~   84 (405)
                      .+..+.++|||+|||+++|+++|+++|+.||+|. +|++..   +..++.++|||||+|.+.++|+.|++.+|...+++.
T Consensus         4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~---~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~   80 (99)
T 2div_A            4 GSSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIR---NRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGA   80 (99)
T ss_dssp             CCCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEE---CSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSC
T ss_pred             CCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEee---cCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCC
Confidence            3467889999999999999999999999999999 999943   334678999999999999999999986555544444


Q ss_pred             e
Q psy14559         85 L   85 (405)
Q Consensus        85 ~   85 (405)
                      .
T Consensus        81 ~   81 (99)
T 2div_A           81 T   81 (99)
T ss_dssp             S
T ss_pred             C
Confidence            3

>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1

Probab=99.53  E-value=3.1e-15  Score=135.28  Aligned_cols=75  Identities=28%  Similarity=0.437  Sum_probs=69.8

Q ss_pred             CcEEEEeCCCC-CCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCC
Q psy14559        166 RRTLVAINIEE-SVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQS  243 (405)
Q Consensus       166 ~rtvfV~NLp~-~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~  243 (405)
                      .++|||+|||+ ++++++|+++|++||.|.+|+++.+.   +|||||+|.+.++|.+|+. |||..+.|++|.|.+++..
T Consensus         3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~---~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~   79 (198)
T 1qm9_A            3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK---KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ   79 (198)
T ss_dssp             CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC---SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCC
T ss_pred             CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCC
Confidence            57999999999 99999999999999999999996543   7899999999999999998 9999999999999998744

>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A

Probab=99.53  E-value=2.6e-14  Score=126.27  Aligned_cols=75  Identities=27%  Similarity=0.295  Sum_probs=68.2

Q ss_pred             cEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCC--eeEEEeeccCC
Q psy14559        167 RTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKG--KTLQMFHSTQS  243 (405)
Q Consensus       167 rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g--~~i~V~~a~~~  243 (405)
                      .+|||+||++.+|+++|+++|++||.|.+|.+..+  .++|||||+|.+.++|..|++ |||..|.|  ++|+|++++..
T Consensus        47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k--~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~  124 (164)
T 1sjr_A           47 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK--NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT  124 (164)
T ss_dssp             EEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES--SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSS
T ss_pred             EEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC--CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCC
Confidence            57999999999999999999999999999998643  357899999999999999999 99999965  99999999754

>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.53  E-value=2.2e-14  Score=114.90  Aligned_cols=82  Identities=10%  Similarity=0.182  Sum_probs=67.5

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEE-EEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDL-RLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALV   86 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v-~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~   86 (405)
                      +.+.++|||+|||+++|+++|+++|+.||.|.++ ++ +.  +..++.++|||||+|.+.++|+.|+..+|...+++..+
T Consensus         2 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i-~~--~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l   78 (96)
T 1x5t_A            2 SSGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKI-MR--DPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPI   78 (96)
T ss_dssp             CSCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEE-CC--CTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEEC
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEE-EE--cCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence            4578999999999999999999999999999999 88 33  33468889999999999999999998655555555555


Q ss_pred             EeecCC
Q psy14559         87 VTPYNS   92 (405)
Q Consensus        87 vv~~~~   92 (405)
                      .+.++.
T Consensus        79 ~v~~a~   84 (96)
T 1x5t_A           79 TVSYAF   84 (96)
T ss_dssp             EEEESC
T ss_pred             EEEEec
Confidence            555544

>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.52  E-value=3.2e-14  Score=116.05  Aligned_cols=82  Identities=17%  Similarity=0.221  Sum_probs=69.0

Q ss_pred             CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeE
Q psy14559          7 APVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALV   86 (405)
Q Consensus         7 ~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~   86 (405)
                      ...+.++|||+|||+++|+++|+++|+.||+|.+|++.. +  ..++.++|||||+|.+.++|+.|+.. +...+++..+
T Consensus        12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~-~--~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l   87 (105)
T 2dh8_A           12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMK-D--KTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNI   87 (105)
T ss_dssp             CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEE-C--SSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEE
T ss_pred             CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEee-C--CCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEE
Confidence            366789999999999999999999999999999999943 2  24678999999999999999999988 6666666666


Q ss_pred             EeecCC
Q psy14559         87 VTPYNS   92 (405)
Q Consensus        87 vv~~~~   92 (405)
                      .+.++.
T Consensus        88 ~V~~a~   93 (105)
T 2dh8_A           88 DPKPCT   93 (105)
T ss_dssp             BCCCSC
T ss_pred             EEEEcc
Confidence            655544

>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A

Probab=99.52  E-value=3.5e-14  Score=129.21  Aligned_cols=79  Identities=11%  Similarity=0.185  Sum_probs=72.0

Q ss_pred             cCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeeccCC
Q psy14559        165 IRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQS  243 (405)
Q Consensus       165 ~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~~~  243 (405)
                      ..++|||+|||+++|+++|+++|++||.|.+|+++.+ ++.++|||||+|.+.++|.+|+.+.+..++|++|.|..++..
T Consensus       108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~y  187 (193)
T 2voo_A          108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDDY  187 (193)
T ss_dssp             HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTTC
T ss_pred             ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHHH
Confidence            3689999999999999999999999999999999765 677899999999999999999996567999999999987643

>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.52  E-value=2.7e-14  Score=116.11  Aligned_cols=82  Identities=15%  Similarity=0.248  Sum_probs=66.0

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      ..+.++|||+|||+++|+++|+++|+.||+|.+|++ +.  +..++.++|||||+|.+.++|+.|+..+|...+++..+.
T Consensus        10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i-~~--~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~   86 (103)
T 2dnm_A           10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYI-PR--EPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELR   86 (103)
T ss_dssp             CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEC-CB--CSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCE
T ss_pred             CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-Ee--CCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence            556799999999999999999999999999999999 33  234678899999999999999999985444444444444


Q ss_pred             eecCC
Q psy14559         88 TPYNS   92 (405)
Q Consensus        88 v~~~~   92 (405)
                      +.++.
T Consensus        87 V~~a~   91 (103)
T 2dnm_A           87 VQVAR   91 (103)
T ss_dssp             EEECS
T ss_pred             EEECC
Confidence            44443

>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}

Probab=99.52  E-value=2.3e-14  Score=116.67  Aligned_cols=77  Identities=12%  Similarity=0.184  Sum_probs=63.3

Q ss_pred             CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCC--ccccce
Q psy14559          7 APVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNT--VFIDRA   84 (405)
Q Consensus         7 ~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~--~~~~~~   84 (405)
                      ...++++|||+|||+.+|+++|+++|++||+|.+|++.         +++|||||+|.+.++|..|+..++.  ..+++.
T Consensus        17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~---------~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr   87 (100)
T 3r27_A           17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVM---------PKKRQALVEFEDVLGACNAVNYAADNQIYIAGH   87 (100)
T ss_dssp             CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEE---------TTTTEEEEEESSHHHHHHHHHHHHHSCEEETTE
T ss_pred             cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEE---------cCCCEEEEEECCHHHHHHHHHHhcCCCceeCCc
Confidence            36688999999999999999999999999999999983         1479999999999999999975443  235555


Q ss_pred             eEEeecCC
Q psy14559         85 LVVTPYNS   92 (405)
Q Consensus        85 ~~vv~~~~   92 (405)
                      .+.+.+..
T Consensus        88 ~i~V~~S~   95 (100)
T 3r27_A           88 PAFVNYST   95 (100)
T ss_dssp             EEEEEECS
T ss_pred             EEEEEecc
Confidence            55665544

>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A

Probab=99.52  E-value=9.4e-15  Score=118.65  Aligned_cols=79  Identities=13%  Similarity=0.098  Sum_probs=65.0

Q ss_pred             CCCcEEEEcCCCC------CCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCcccc
Q psy14559          9 VKTKVVQVANIAP------QATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFID   82 (405)
Q Consensus         9 ~~~~tLfVgNLp~------~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~   82 (405)
                      +..++|||+|||+      ++|+++|+++|++||+|.+|+| +.++  .+++++|||||+|.+.++|+.|++.+|+..++
T Consensus         4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i-~~d~--~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~   80 (100)
T 3ns6_A            4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEF-PIDE--ATGKTKGFLFVECGSMNDAKKIIKSFHGKRLD   80 (100)
T ss_dssp             CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEEC-CEET--TTTEECSEEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred             CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEE-EEcC--CCCccceEEEEEECCHHHHHHHHHHhCCcccC
Confidence            4578999999999      9999999999999999999999 4433  46889999999999999999999755554444


Q ss_pred             c-eeEEeec
Q psy14559         83 R-ALVVTPY   90 (405)
Q Consensus        83 ~-~~~vv~~   90 (405)
                      + ..+.+.+
T Consensus        81 g~r~l~V~~   89 (100)
T 3ns6_A           81 LKHRLFLYT   89 (100)
T ss_dssp             SSCBCEEEE
T ss_pred             CCeEEEEEE
Confidence            4 4444443

>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}

Probab=99.52  E-value=3.1e-14  Score=114.93  Aligned_cols=79  Identities=13%  Similarity=0.143  Sum_probs=65.1

Q ss_pred             cCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEE--------EEEeeccCCCCCCccccEEEEEecchhhHHHHHhc-c
Q psy14559          6 VAPVKTKVVQVANIAPQATRDQMQTLFGYLGKVED--------LRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHL-T   76 (405)
Q Consensus         6 ~~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~--------v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~-~   76 (405)
                      ..+...++|||+|||+++|+++|+++|+.||.|.+        +++ +.+  ..+++++|||||+|.+.++|+.|++. +
T Consensus         8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i-~~~--~~~g~~~G~afV~f~~~~~a~~Ai~~l~   84 (99)
T 2la6_A            8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINL-YTD--RETGKLKGEATVSFDDPPSAKAAIDWFD   84 (99)
T ss_dssp             CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEE-EEC--TTTCSEEEEEEEEBSSHHHHHHHHHHHT
T ss_pred             CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEE-Eec--CCCCCeeeEEEEEECCHHHHHHHHHHhC
Confidence            34778899999999999999999999999999999        888 333  24688999999999999999999975 4


Q ss_pred             CCccccceeEE
Q psy14559         77 NTVFIDRALVV   87 (405)
Q Consensus        77 n~~~~~~~~~v   87 (405)
                      +..+.++.+.|
T Consensus        85 g~~~~g~~l~V   95 (99)
T 2la6_A           85 GKEFSGNPIKV   95 (99)
T ss_dssp             TCBSSSSBCEE
T ss_pred             CCEeCCcEEEE
Confidence            44444444433

>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.52  E-value=3.4e-14  Score=115.74  Aligned_cols=82  Identities=13%  Similarity=0.137  Sum_probs=67.3

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      ....++|||+|||+++|+++|+++|+.||+|.+|++. .  +..++.++|||||+|.+.++|+.|+..+|...+++..+.
T Consensus        12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~-~--~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~   88 (105)
T 1x5u_A           12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMP-K--DRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIR   88 (105)
T ss_dssp             CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECC-B--CSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE-e--cCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence            6678999999999999999999999999999999993 3  334678999999999999999999986555555555555


Q ss_pred             eecCC
Q psy14559         88 TPYNS   92 (405)
Q Consensus        88 v~~~~   92 (405)
                      +.++.
T Consensus        89 v~~a~   93 (105)
T 1x5u_A           89 VNKAS   93 (105)
T ss_dssp             EEETT
T ss_pred             EEECC
Confidence            54443

>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}

Probab=99.52  E-value=3.5e-14  Score=117.14  Aligned_cols=80  Identities=14%  Similarity=0.167  Sum_probs=63.1

Q ss_pred             cCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCcccccee
Q psy14559          6 VAPVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRAL   85 (405)
Q Consensus         6 ~~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~   85 (405)
                      .+..+.++|||+|||+++|+++|+++|+.||+|.+|++ ..  +..++.++|||||+|.+.++|+.|+..++..+.++.+
T Consensus        20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i-~~--~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l   96 (109)
T 2rs2_A           20 HMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLV-MR--DPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTI   96 (109)
T ss_dssp             ------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEE-CC--CTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEE
T ss_pred             ccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEE-EE--CCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEE
Confidence            34567899999999999999999999999999999999 33  3346889999999999999999999888754445544


Q ss_pred             EEe
Q psy14559         86 VVT   88 (405)
Q Consensus        86 ~vv   88 (405)
                      .+.
T Consensus        97 ~V~   99 (109)
T 2rs2_A           97 DPK   99 (109)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.52  E-value=4.4e-14  Score=114.16  Aligned_cols=81  Identities=15%  Similarity=0.286  Sum_probs=66.6

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      ..+.++|||+|||+++|+++|+++|+.||+|.+|++.. +.   +++++|||||+|.+.++|+.|+..+|...+++..+.
T Consensus        14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~-~~---~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~   89 (100)
T 2do4_A           14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVT-NR---AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIK   89 (100)
T ss_dssp             CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEE-CT---TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEE-CC---CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence            45679999999999999999999999999999999943 32   578899999999999999999976555555555555


Q ss_pred             eecCC
Q psy14559         88 TPYNS   92 (405)
Q Consensus        88 v~~~~   92 (405)
                      +.++.
T Consensus        90 v~~a~   94 (100)
T 2do4_A           90 VAISN   94 (100)
T ss_dssp             EEECC
T ss_pred             EEECC
Confidence            55443

>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}

Probab=99.52  E-value=2.3e-14  Score=113.33  Aligned_cols=75  Identities=13%  Similarity=0.173  Sum_probs=63.7

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      ...+..|||+||++.+||++|+++|++||+|.++++.         .++|||||+|.+.++|.+|++.+|+..++++.+.
T Consensus         4 ~~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~---------~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~   74 (89)
T 2wbr_A            4 AWGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPY---------LNQGIALCKYTTREEANKAQMALNNCVLANTTIF   74 (89)
T ss_dssp             CCCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEE---------TTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred             CCccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEc---------CCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEE
Confidence            3457889999999999999999999999999999992         2599999999999999999987666666666666


Q ss_pred             eecC
Q psy14559         88 TPYN   91 (405)
Q Consensus        88 v~~~   91 (405)
                      +.++
T Consensus        75 V~~A   78 (89)
T 2wbr_A           75 AESP   78 (89)
T ss_dssp             EECC
T ss_pred             EEEC
Confidence            6554

>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.52  E-value=4.4e-14  Score=116.18  Aligned_cols=82  Identities=9%  Similarity=0.177  Sum_probs=69.1

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccC------Cccc
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTN------TVFI   81 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n------~~~~   81 (405)
                      ..+.++|||+|||+++|+++|+++|+.||+|.+|++ +.  +..++.++|||||+|.+.++|..|+..+|      ...+
T Consensus        12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i-~~--~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~   88 (111)
T 1x4h_A           12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRV-VL--HPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKL   88 (111)
T ss_dssp             CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEC-CB--CSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEES
T ss_pred             CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEE-Ee--cCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEE
Confidence            556899999999999999999999999999999999 33  33467889999999999999999998766      6666


Q ss_pred             cceeEEeecCC
Q psy14559         82 DRALVVTPYNS   92 (405)
Q Consensus        82 ~~~~~vv~~~~   92 (405)
                      ++..+.+.+..
T Consensus        89 ~g~~l~v~~a~   99 (111)
T 1x4h_A           89 DGRQLKVDLAV   99 (111)
T ss_dssp             SSCEEEEECCC
T ss_pred             cCEEEEEEECC
Confidence            66666666554

>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=99.52  E-value=3.9e-14  Score=116.72  Aligned_cols=82  Identities=13%  Similarity=0.190  Sum_probs=66.6

Q ss_pred             CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeE
Q psy14559          7 APVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALV   86 (405)
Q Consensus         7 ~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~   86 (405)
                      +..+.++|||+|||+.+|+++|+++|+.||+|.+|++.. +  ..++.++|||||+|.+.++|+.|+..+|+..+++..+
T Consensus        22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~-~--~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l   98 (108)
T 2jrs_A           22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMM-D--SETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPM   98 (108)
T ss_dssp             SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEE-E--TTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred             CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE-c--CCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence            366789999999999999999999999999999999943 2  2467889999999999999999997555444544444


Q ss_pred             EeecC
Q psy14559         87 VTPYN   91 (405)
Q Consensus        87 vv~~~   91 (405)
                      .+.+.
T Consensus        99 ~V~~a  103 (108)
T 2jrs_A           99 KVGHV  103 (108)
T ss_dssp             EEECS
T ss_pred             EEEEc
Confidence            44443

>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A

Probab=99.52  E-value=4.2e-14  Score=115.21  Aligned_cols=81  Identities=12%  Similarity=0.194  Sum_probs=65.3

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhc-cCCccccc--e
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHL-TNTVFIDR--A   84 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~-~n~~~~~~--~   84 (405)
                      ..+.++|||+|||+++|+++|+++|+.||.|.+|++.. +.   ++.++|||||+|.+.++|+.|+.. ++..+.++  .
T Consensus        12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~-~~---~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~   87 (105)
T 2dnh_A           12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLR-GP---DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASS   87 (105)
T ss_dssp             CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEE-CS---SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSS
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE-CC---CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCc
Confidence            45689999999999999999999999999999999943 32   478899999999999999999975 44455551  3


Q ss_pred             eEEeecCC
Q psy14559         85 LVVTPYNS   92 (405)
Q Consensus        85 ~~vv~~~~   92 (405)
                      .+.+.++.
T Consensus        88 ~l~V~~a~   95 (105)
T 2dnh_A           88 SLVVKFAD   95 (105)
T ss_dssp             CCEEEESC
T ss_pred             cEEEEECc
Confidence            44444443

>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.52  E-value=2.3e-14  Score=113.21  Aligned_cols=74  Identities=16%  Similarity=0.231  Sum_probs=63.9

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeeccCC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQS  243 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~~~  243 (405)
                      .++|||+|||+++++++|+++|++||.|.+|+++.+   ++|||||+|.+.++|++|+.. +..+.|++|.|.++...
T Consensus         5 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~~~   78 (88)
T 1wf0_A            5 SSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP---FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAEPK   78 (88)
T ss_dssp             CCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS---CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCCCC
T ss_pred             CcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC---CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecCCC
Confidence            689999999999999999999999999999999653   789999999999999764332 34568999999998744

>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.52  E-value=8.5e-14  Score=115.64  Aligned_cols=80  Identities=14%  Similarity=0.152  Sum_probs=67.2

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      ....++|||+|||+++|+++|+++|+.||+|.+|+|. .  +..+++++|||||+|.+.++|+.|+..++.. +++..+.
T Consensus        14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~-~--~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~-~~g~~l~   89 (116)
T 2cqd_A           14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVI-T--DRQTGKSRGYGFVTMADRAAAERACKDPNPI-IDGRKAN   89 (116)
T ss_dssp             SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEES-C--CSSSCCCCSEEEEEESSHHHHHHHHTCSSCE-ETTEECE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEE-E--cCCCCccceEEEEEECCHHHHHHHHHhCCCc-CCCEEEE
Confidence            5678999999999999999999999999999999993 3  3346789999999999999999999888874 5444444


Q ss_pred             eecC
Q psy14559         88 TPYN   91 (405)
Q Consensus        88 v~~~   91 (405)
                      +.++
T Consensus        90 V~~a   93 (116)
T 2cqd_A           90 VNLA   93 (116)
T ss_dssp             EEES
T ss_pred             EEEc
Confidence            5444

>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A

Probab=99.51  E-value=5.7e-14  Score=116.43  Aligned_cols=82  Identities=16%  Similarity=0.300  Sum_probs=68.2

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      ..+.++|||+|||+.+|+++|+++|+.||.|.+|++..   +..++.++|||||+|.+.++|+.|+..+|...+++..+.
T Consensus        12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~   88 (115)
T 2dgo_A           12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVK---DMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR   88 (115)
T ss_dssp             STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE---CTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred             CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---cCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence            56789999999999999999999999999999999943   224678899999999999999999976555555555555


Q ss_pred             eecCC
Q psy14559         88 TPYNS   92 (405)
Q Consensus        88 v~~~~   92 (405)
                      +.++.
T Consensus        89 V~~a~   93 (115)
T 2dgo_A           89 TNWAT   93 (115)
T ss_dssp             EEESS
T ss_pred             EEEcc
Confidence            55544

>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.51  E-value=6.3e-14  Score=113.86  Aligned_cols=82  Identities=13%  Similarity=0.227  Sum_probs=66.1

Q ss_pred             cCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCcccccee
Q psy14559          6 VAPVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRAL   85 (405)
Q Consensus         6 ~~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~   85 (405)
                      ....+.++|||+|||+++|+++|+++|+.||+|.+|++. .+.    ..++|||||+|.+.++|+.|+..+|...+++..
T Consensus        10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~-~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~   84 (103)
T 2cq3_A           10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEII-FNE----RGSKGFGFVTFENSADADRAREKLHGTVVEGRK   84 (103)
T ss_dssp             CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEE-CCT----TTTCCEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred             CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE-ecC----CCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence            346678999999999999999999999999999999994 332    237999999999999999999755554455555


Q ss_pred             EEeecCC
Q psy14559         86 VVTPYNS   92 (405)
Q Consensus        86 ~vv~~~~   92 (405)
                      +.+.++.
T Consensus        85 l~v~~a~   91 (103)
T 2cq3_A           85 IEVNNAT   91 (103)
T ss_dssp             CEEEECC
T ss_pred             EEEEEcc
Confidence            5555444

>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C

Probab=99.51  E-value=1e-14  Score=115.85  Aligned_cols=75  Identities=15%  Similarity=0.160  Sum_probs=59.7

Q ss_pred             cEEEEcCCCCCCCHHHHHHHhccCC--ceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccC-CccccceeEEe
Q psy14559         12 KVVQVANIAPQATRDQMQTLFGYLG--KVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTN-TVFIDRALVVT   88 (405)
Q Consensus        12 ~tLfVgNLp~~vTeedLr~lFs~~G--~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n-~~~~~~~~~vv   88 (405)
                      .+|||+|||+++|+++|+++|+.||  .|.++++. .  +..+++++|||||+|.+.++|+.|++.+| ..+.++.+.|.
T Consensus         2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~-~--~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~   78 (90)
T 3p5t_L            2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFF-E--NRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVT   78 (90)
T ss_dssp             --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEE-E--CTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEEC
T ss_pred             eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEE-e--cCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEE
Confidence            5899999999999999999999999  99999994 3  33468899999999999999999996544 45555555444


Q ss_pred             e
Q psy14559         89 P   89 (405)
Q Consensus        89 ~   89 (405)
                      .
T Consensus        79 ~   79 (90)
T 3p5t_L           79 P   79 (90)
T ss_dssp             C
T ss_pred             E
Confidence            3

>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.51  E-value=1.8e-14  Score=112.89  Aligned_cols=75  Identities=9%  Similarity=0.114  Sum_probs=63.1

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCcccccee
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRAL   85 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~   85 (405)
                      +.+.++|||+|||+++|+++|+++|+.||+|.+|++. .+  ..++.++|||||+|.+.++|+.|+..+|...+++..
T Consensus         2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~-~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~   76 (85)
T 1x4e_A            2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAI-LD--KTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQM   76 (85)
T ss_dssp             CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEE-CC--SSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEES
T ss_pred             CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE-ec--CCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEE
Confidence            4578999999999999999999999999999999993 32  246788999999999999999999855554444433

>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.51  E-value=6.3e-14  Score=114.48  Aligned_cols=78  Identities=12%  Similarity=0.194  Sum_probs=64.7

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEE-EEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVED-LRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALV   86 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~-v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~   86 (405)
                      ....++|||+|||+++|+++|+++|+.||.|.+ |+| +.+   .+++++|||||+|.+.++|+.|+..++..+.++.+.
T Consensus        12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i-~~~---~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~   87 (104)
T 1wg5_A           12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTL-PVD---FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIE   87 (104)
T ss_dssp             CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEEC-CBC---SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEE-EEC---CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEE
Confidence            456799999999999999999999999999998 777 433   368899999999999999999998855555555555


Q ss_pred             Eee
Q psy14559         87 VTP   89 (405)
Q Consensus        87 vv~   89 (405)
                      +..
T Consensus        88 v~~   90 (104)
T 1wg5_A           88 IFK   90 (104)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            544

>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.51  E-value=2.5e-14  Score=115.91  Aligned_cols=82  Identities=13%  Similarity=0.216  Sum_probs=68.6

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      ..+.++|||+|||+++|+++|+++|+.||+|.+|++ +.  +..+++++|||||+|.+.++|+.|+..+|...+++..+.
T Consensus         9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i-~~--~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~   85 (102)
T 2cqb_A            9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQI-PL--DYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR   85 (102)
T ss_dssp             CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEEC-CC--CSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEE-Ee--cCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence            567899999999999999999999999999999999 33  334678899999999999999999976666656566666


Q ss_pred             eecCC
Q psy14559         88 TPYNS   92 (405)
Q Consensus        88 v~~~~   92 (405)
                      +.++.
T Consensus        86 V~~a~   90 (102)
T 2cqb_A           86 VNLAK   90 (102)
T ss_dssp             EEECC
T ss_pred             EEeCC
Confidence            65554

>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.51  E-value=5.6e-14  Score=114.15  Aligned_cols=80  Identities=15%  Similarity=0.267  Sum_probs=65.6

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      ....++|||+|||+.+|+++|+++|+.||+|.+|++ ..+.    ..++|||||+|.+.++|+.|+..+|...+++..+.
T Consensus        12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~   86 (103)
T 2cqi_A           12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKM-ITEH----TSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVK   86 (103)
T ss_dssp             SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEE-ECCC----CSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred             CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEE-EecC----CCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEE
Confidence            556799999999999999999999999999999999 4332    33689999999999999999985555555555555


Q ss_pred             eecCC
Q psy14559         88 TPYNS   92 (405)
Q Consensus        88 v~~~~   92 (405)
                      +.++.
T Consensus        87 V~~a~   91 (103)
T 2cqi_A           87 VNWAT   91 (103)
T ss_dssp             EEECC
T ss_pred             EEECC
Confidence            65554

>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}

Probab=99.51  E-value=5.2e-14  Score=117.21  Aligned_cols=79  Identities=11%  Similarity=0.169  Sum_probs=65.0

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      ..+.++|||+|||+++|+++|+++|+.||+|.+|++. .  +..+++++|||||+|.+.++|+.|+..+|...+++..+.
T Consensus        37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~-~--~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~  113 (118)
T 2khc_A           37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVF-I--DKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLK  113 (118)
T ss_dssp             CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEEC-C--CSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECC
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-e--CCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence            4567999999999999999999999999999999993 3  234678899999999999999999986555555554444


Q ss_pred             ee
Q psy14559         88 TP   89 (405)
Q Consensus        88 v~   89 (405)
                      +.
T Consensus       114 V~  115 (118)
T 2khc_A          114 VQ  115 (118)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B

Probab=99.51  E-value=3.7e-14  Score=134.48  Aligned_cols=135  Identities=16%  Similarity=0.206  Sum_probs=95.9

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCCC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQSI  244 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~~  244 (405)
                      .++|||+|||+++|+++|+++|++||.|.+|.+.    .++|||||+|.+.++|..|+. |||..+.|+.|.|.++....
T Consensus        22 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~----~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~   97 (261)
T 3sde_A           22 RCRLFVGNLPTDITEEDFKRLFERYGEPSEVFIN----RDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHGA   97 (261)
T ss_dssp             GGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCSS
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEe----CCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecccCC
Confidence            6899999999999999999999999999999994    458999999999999999998 99999999999999986431


Q ss_pred             -CCCCCCChHHHHHHHHHHHHHHHHhhhhhhhccCcccCcccccccCCCCCceEEEEEEEeeehhhHHHhhhCC
Q psy14559        245 -QKPEAKSNEAAQREIEEAMSRVKEAQNMISAAIDPVIGILSKDKKKSHSPVRHLVIVLIVVDVALDLALEIGD  317 (405)
Q Consensus       245 -~~p~~~~~~~~~~e~~~~~k~~~~~~~~~s~~~ep~~~~~~~dk~~~~s~~~~~~~~~~~~d~~~~~al~~~~  317 (405)
                       .--...+......++.+.+..+.          +.....+..+ ++++  ..|++++.|.....+.+||+..+
T Consensus        98 ~l~v~nl~~~~t~~~l~~~F~~~G----------~i~~v~i~~~-~~g~--~~g~afV~f~~~~~A~~A~~~l~  158 (261)
T 3sde_A           98 ALTVKNLSPVVSNELLEQAFSQFG----------PVEKAVVVVD-DRGR--ATGKGFVEFAAKPPARKALERCG  158 (261)
T ss_dssp             EEEEESCCTTCCHHHHHHHHGGGS----------CEEEEEEEEE-TTSC--EEEEEEEEESSHHHHHHHHHHHH
T ss_pred             cccccCCCCCCCHHHHHHHHHhcC----------CeEEEEeeeC-CCCC--cCcEEEEEeCCHHHHHHHHHHhc
Confidence             00001111122334444432221          1112223344 3344  45666666777777889998753

>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.51  E-value=1.7e-14  Score=110.66  Aligned_cols=73  Identities=15%  Similarity=0.211  Sum_probs=61.7

Q ss_pred             cEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559         12 KVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus        12 ~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      ++|||+|||+++|+++|+++|++||+|.++++ +.  +..+++++|||||+|.+.++|+.|+..++..+.++.+.+
T Consensus         1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i-~~--~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v   73 (77)
T 1uaw_A            1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLV-MR--DPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDP   73 (77)
T ss_dssp             CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEE-EC--CCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEE
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-ec--CCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEE
Confidence            57999999999999999999999999999999 43  234678899999999999999999988884444544443

>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.51  E-value=7.4e-14  Score=118.16  Aligned_cols=72  Identities=28%  Similarity=0.321  Sum_probs=65.6

Q ss_pred             EEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcE-EEEEECCHHHHHHHHH-hCCceeCC--eeEEEeeccCC
Q psy14559        168 TLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKY-ALVEFSDQACVIPALK-LNGTNLKG--KTLQMFHSTQS  243 (405)
Q Consensus       168 tvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~-afV~F~~~e~A~~Al~-lng~~l~g--~~i~V~~a~~~  243 (405)
                      .|||+||++.+|+++|+++|++||.|.+|.+..+    .|| |||+|.+.++|..|+. |||..|.|  ++|+|++++..
T Consensus        27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~  102 (124)
T 2e5i_A           27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPT  102 (124)
T ss_dssp             EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCS
T ss_pred             EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCC
Confidence            5789999999999999999999999999998643    386 9999999999999998 99999987  69999999754

>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A

Probab=99.51  E-value=4.2e-14  Score=117.35  Aligned_cols=82  Identities=9%  Similarity=0.108  Sum_probs=67.6

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      ..+.++|||+|||+++|+++|+++|+.||.|.+|++..   +..+++++|||||+|.+.++|+.|+..+|...+++..+.
T Consensus        22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~   98 (115)
T 2cpz_A           22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFI---DKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLK   98 (115)
T ss_dssp             CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEE---CSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred             CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence            45669999999999999999999999999999999944   224678999999999999999999966555555555555


Q ss_pred             eecCC
Q psy14559         88 TPYNS   92 (405)
Q Consensus        88 v~~~~   92 (405)
                      +.+..
T Consensus        99 V~~a~  103 (115)
T 2cpz_A           99 VQLKR  103 (115)
T ss_dssp             EECCC
T ss_pred             EEEcC
Confidence            55544

>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}

Probab=99.50  E-value=4.6e-14  Score=117.80  Aligned_cols=82  Identities=9%  Similarity=0.138  Sum_probs=67.0

Q ss_pred             CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeE
Q psy14559          7 APVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALV   86 (405)
Q Consensus         7 ~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~   86 (405)
                      +....++|||+|||+++|+++|+++|+.||.|.+|.+ ..+.   +++++|||||+|.+.++|+.|+..+|...+++..+
T Consensus         3 e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i-~~~~---~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l   78 (116)
T 2fy1_A            3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLL-IKDR---TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAI   78 (116)
T ss_dssp             TTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEE-ECST---TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBC
T ss_pred             CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-EECC---CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence            3557799999999999999999999999999999999 4332   57889999999999999999997555555555555


Q ss_pred             EeecCC
Q psy14559         87 VTPYNS   92 (405)
Q Consensus        87 vv~~~~   92 (405)
                      .+.++.
T Consensus        79 ~V~~a~   84 (116)
T 2fy1_A           79 KVEQAK   84 (116)
T ss_dssp             EEEECC
T ss_pred             EEEECC
Confidence            555444

>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1

Probab=99.50  E-value=5.3e-14  Score=114.83  Aligned_cols=79  Identities=14%  Similarity=0.167  Sum_probs=64.2

Q ss_pred             CCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEe
Q psy14559          9 VKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVT   88 (405)
Q Consensus         9 ~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv   88 (405)
                      .+.++|||+|||+++|+++|+++|+.||+|.+|++. .  +..++.++|||||+|.+.++|+.|+..+|+..+++..+.+
T Consensus        21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~-~--~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V   97 (106)
T 1p27_B           21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLN-L--DRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV   97 (106)
T ss_dssp             TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEE-E--CTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEE-e--cCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEE
Confidence            456889999999999999999999999999999994 3  2346889999999999999999999754544444444444


Q ss_pred             ec
Q psy14559         89 PY   90 (405)
Q Consensus        89 ~~   90 (405)
                      .+
T Consensus        98 ~~   99 (106)
T 1p27_B           98 DW   99 (106)
T ss_dssp             EE
T ss_pred             Ee
Confidence            43

>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}

Probab=99.50  E-value=2.8e-14  Score=111.03  Aligned_cols=68  Identities=12%  Similarity=0.199  Sum_probs=58.6

Q ss_pred             CcEEEEcCCCCCC------CHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccc
Q psy14559         11 TKVVQVANIAPQA------TRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDR   83 (405)
Q Consensus        11 ~~tLfVgNLp~~v------TeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~   83 (405)
                      .++|||+|||+.+      |+++|+++|++||+|.+|++ +.    .+++++|||||+|.+.++|+.|+..+|+..+++
T Consensus         1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i-~~----~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g   74 (81)
T 2krb_A            1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFY-PE----EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK   74 (81)
T ss_dssp             CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEEC-CC----BTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSS
T ss_pred             CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEe-cC----CCCcEeEEEEEEECCHHHHHHHHHHhcCcccCC
Confidence            4799999999999      88999999999999999998 32    357889999999999999999998655554444

>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A

Probab=99.50  E-value=4.8e-14  Score=111.98  Aligned_cols=80  Identities=13%  Similarity=0.030  Sum_probs=65.4

Q ss_pred             CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeE
Q psy14559          7 APVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALV   86 (405)
Q Consensus         7 ~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~   86 (405)
                      +..+.++|||+|||+++|+++|+++|+.||+|.+|++.. +    +++++|||||+|.+.++|+.|+..++...+++..+
T Consensus         4 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~-~----~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l   78 (92)
T 2dgv_A            4 GSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKM-E----NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREI   78 (92)
T ss_dssp             SSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEE-S----SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCC
T ss_pred             CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEc-c----CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence            356789999999999999999999999999999999943 2    47789999999999999999997555444444444


Q ss_pred             EeecC
Q psy14559         87 VTPYN   91 (405)
Q Consensus        87 vv~~~   91 (405)
                      .+.+.
T Consensus        79 ~v~~a   83 (92)
T 2dgv_A           79 DVRID   83 (92)
T ss_dssp             CCEEC
T ss_pred             EEEEc
Confidence            44443

>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.50  E-value=4.7e-14  Score=115.13  Aligned_cols=78  Identities=12%  Similarity=0.086  Sum_probs=64.5

Q ss_pred             CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeE
Q psy14559          7 APVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALV   86 (405)
Q Consensus         7 ~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~   86 (405)
                      .+...++|||+|||+++|+++|+++|+.||. .+|+| +.++   +++++|||||+|.+.++|+.|+.+++..+.++.+.
T Consensus        11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i-~~d~---~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~   85 (102)
T 1wez_A           11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHI-EIGP---DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVE   85 (102)
T ss_dssp             CCSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEE-EESS---SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCE
T ss_pred             CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEE-EECC---CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEE
Confidence            3567799999999999999999999999995 49988 4332   58899999999999999999998765555566555


Q ss_pred             Eee
Q psy14559         87 VTP   89 (405)
Q Consensus        87 vv~   89 (405)
                      +..
T Consensus        86 V~~   88 (102)
T 1wez_A           86 LFL   88 (102)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            544

>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.50  E-value=4.6e-14  Score=114.70  Aligned_cols=81  Identities=9%  Similarity=0.089  Sum_probs=66.2

Q ss_pred             CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeE
Q psy14559          7 APVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALV   86 (405)
Q Consensus         7 ~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~   86 (405)
                      ...+.++|||+|||+++|+++|+++|+.||+|.+|++.. +    ++.++|||||+|.+.++|+.|+..+|...+++..+
T Consensus        11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~-~----~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l   85 (103)
T 2d9p_A           11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMM-E----GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL   85 (103)
T ss_dssp             CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEE-C----SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBC
T ss_pred             CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEc-C----CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence            356789999999999999999999999999999999943 2    47789999999999999999998555444444445


Q ss_pred             EeecCC
Q psy14559         87 VTPYNS   92 (405)
Q Consensus        87 vv~~~~   92 (405)
                      .+.++.
T Consensus        86 ~V~~a~   91 (103)
T 2d9p_A           86 YVALAQ   91 (103)
T ss_dssp             EEEECS
T ss_pred             EEEEec
Confidence            554443

>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.50  E-value=4e-14  Score=116.70  Aligned_cols=82  Identities=15%  Similarity=0.223  Sum_probs=66.1

Q ss_pred             ccCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccce
Q psy14559          5 TVAPVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRA   84 (405)
Q Consensus         5 ~~~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~   84 (405)
                      +......++|||+|||+++|+++|+++|+.||+|.+|++ ..+.    +.++|||||+|.+.++|+.|+..+|+..+++.
T Consensus        23 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i-~~~~----~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~   97 (109)
T 2err_A           23 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEI-IFNE----RGSKGFGFVTFENSADADRAREKLHGTVVEGR   97 (109)
T ss_dssp             CSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEE-CCBT----TBCTTEEEEECCCSHHHHHHHHHHTTCEETTE
T ss_pred             ccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEE-EECC----CCCceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence            344667899999999999999999999999999999999 3332    34799999999999999999985555445555


Q ss_pred             eEEeecC
Q psy14559         85 LVVTPYN   91 (405)
Q Consensus        85 ~~vv~~~   91 (405)
                      .+.+.++
T Consensus        98 ~l~V~~a  104 (109)
T 2err_A           98 KIEVNNA  104 (109)
T ss_dssp             ECEEEEC
T ss_pred             EEEEEEC
Confidence            5555443

>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A

Probab=99.50  E-value=2.9e-14  Score=108.98  Aligned_cols=72  Identities=18%  Similarity=0.244  Sum_probs=60.9

Q ss_pred             EEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559         13 VVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus        13 tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      +|||+|||+++|+++|+++|+.||+|.+|++ +.  +..+++++|||||+|.+.++|+.|+.+++..+.++.+.+
T Consensus         1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~--~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v   72 (75)
T 2mss_A            1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAML-MF--DKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVEC   72 (75)
T ss_dssp             CEEEECCCSSCCHHHHHHHHHTTSCCSEECC-CB--CSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEE
T ss_pred             CEEEecCCCCCCHHHHHHHHHhcCCEEEEEE-Ee--cCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEE
Confidence            5899999999999999999999999999998 43  234678899999999999999999996665555555443

>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.50  E-value=5.7e-14  Score=114.70  Aligned_cols=83  Identities=17%  Similarity=0.242  Sum_probs=67.3

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhcc-CCccccceeE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLT-NTVFIDRALV   86 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~-n~~~~~~~~~   86 (405)
                      ....++|||+|||+++|+++|+++|+.||+|.+|++. .+. ..++.++|||||+|.+.++|+.|+..+ |...+++..+
T Consensus        12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~-~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l   89 (107)
T 2cph_A           12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLP-KKM-TGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL   89 (107)
T ss_dssp             SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECC-CCC-SSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred             CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEe-cCC-CCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence            5677999999999999999999999999999999993 320 235788999999999999999999765 5555555555


Q ss_pred             EeecCC
Q psy14559         87 VTPYNS   92 (405)
Q Consensus        87 vv~~~~   92 (405)
                      .+.++.
T Consensus        90 ~v~~a~   95 (107)
T 2cph_A           90 VLEWAD   95 (107)
T ss_dssp             EEEECC
T ss_pred             EEEeCC
Confidence            555544

>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A

Probab=99.50  E-value=6.1e-14  Score=114.64  Aligned_cols=78  Identities=15%  Similarity=0.063  Sum_probs=64.4

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      ..+.++|||+|||+.+|+++|+++|+.||.|.+|++.. +.   +++++|||||+|.+.++|+.|+..+|...+++..+.
T Consensus        26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~-~~---~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~  101 (107)
T 3ulh_A           26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHY-DR---SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMN  101 (107)
T ss_dssp             CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEE-CT---TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE-CC---CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence            55689999999999999999999999999999999943 32   578899999999999999999985454444444444


Q ss_pred             ee
Q psy14559         88 TP   89 (405)
Q Consensus        88 v~   89 (405)
                      +.
T Consensus       102 V~  103 (107)
T 3ulh_A          102 IQ  103 (107)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.50  E-value=3.2e-14  Score=115.32  Aligned_cols=78  Identities=12%  Similarity=0.151  Sum_probs=64.3

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccC-CccccceeE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTN-TVFIDRALV   86 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n-~~~~~~~~~   86 (405)
                      ..+.++|||+|||+++|+++|+++|+.||+|.+|++. .  +..++.++|||||+|.+.++|+.|++.+| ..+.++.+.
T Consensus         9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~-~--~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~   85 (102)
T 1x5s_A            9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVV-K--DRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIR   85 (102)
T ss_dssp             CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEEC-C--CSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCE
T ss_pred             CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEE-e--CCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence            5678999999999999999999999999999999993 3  22467789999999999999999996544 444454444


Q ss_pred             Ee
Q psy14559         87 VT   88 (405)
Q Consensus        87 vv   88 (405)
                      |.
T Consensus        86 v~   87 (102)
T 1x5s_A           86 VD   87 (102)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A

Probab=99.49  E-value=4.3e-14  Score=115.34  Aligned_cols=83  Identities=10%  Similarity=0.135  Sum_probs=66.1

Q ss_pred             CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhc-cCCccc--cc
Q psy14559          7 APVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHL-TNTVFI--DR   83 (405)
Q Consensus         7 ~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~-~n~~~~--~~   83 (405)
                      ...+.++|||+|||+++|+++|+++|+.||+|.+|++ +.  +..+++++|||||+|.+.++|+.|+.. ++..++  ++
T Consensus         9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~--~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g   85 (106)
T 2dgp_A            9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTV-LK--DRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMN   85 (106)
T ss_dssp             CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEEC-CC--CSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCS
T ss_pred             CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE-Ee--cCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCC
Confidence            3667899999999999999999999999999999999 43  334678899999999999999999974 444442  33


Q ss_pred             eeEEeecCC
Q psy14559         84 ALVVTPYNS   92 (405)
Q Consensus        84 ~~~vv~~~~   92 (405)
                      ..+.+.++.
T Consensus        86 ~~l~v~~a~   94 (106)
T 2dgp_A           86 RPIQVKPAD   94 (106)
T ss_dssp             SCCEEEECC
T ss_pred             ceEEEEECC
Confidence            444444443

>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A

Probab=99.49  E-value=5.4e-14  Score=119.73  Aligned_cols=82  Identities=13%  Similarity=0.196  Sum_probs=67.7

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      +.+.++|||+|||+++|+++|+++|+.||+|.+|++ +.  +..+++++|||||+|.+.++|+.|+..+|...+++..+.
T Consensus        43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i-~~--d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~  119 (129)
T 2kxn_B           43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSI-VY--DQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR  119 (129)
T ss_dssp             CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEE-EC--CSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-Ee--cCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence            567899999999999999999999999999999999 33  334678899999999999999999986555555555555


Q ss_pred             eecCC
Q psy14559         88 TPYNS   92 (405)
Q Consensus        88 v~~~~   92 (405)
                      +.+..
T Consensus       120 V~~a~  124 (129)
T 2kxn_B          120 VDFSI  124 (129)
T ss_dssp             ESCCS
T ss_pred             EEEec
Confidence            55443

>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}

Probab=99.49  E-value=4.3e-14  Score=119.29  Aligned_cols=75  Identities=11%  Similarity=0.221  Sum_probs=66.5

Q ss_pred             cEEEEeCC----CCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECC----HHH----HHHHHH---hCCce
Q psy14559        167 RTLVAINI----EESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSD----QAC----VIPALK---LNGTN  229 (405)
Q Consensus       167 rtvfV~NL----p~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~----~e~----A~~Al~---lng~~  229 (405)
                      .+|||+||    |+.+++++|+++|++||+|.++.++.|  +|.++|||||+|.+    +++    |.+|+.   +||..
T Consensus         3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~   82 (136)
T 2j8a_A            3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF   82 (136)
T ss_dssp             CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred             cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence            58999999    999999999999999999999999877  78899999999996    433    778865   79999


Q ss_pred             eCCeeEEEeecc
Q psy14559        230 LKGKTLQMFHST  241 (405)
Q Consensus       230 l~g~~i~V~~a~  241 (405)
                      |.|++|+|..-.
T Consensus        83 I~Gr~irV~ln~   94 (136)
T 2j8a_A           83 IMGFKFEVILNK   94 (136)
T ss_dssp             ETTEEEEEEECC
T ss_pred             ecCcEEEEEECc
Confidence            999999999865

>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}

Probab=99.49  E-value=4.7e-14  Score=110.89  Aligned_cols=79  Identities=18%  Similarity=0.272  Sum_probs=62.6

Q ss_pred             CCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCc-cccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559          9 VKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPV-QSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus         9 ~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~-~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      ...++|||+|||+++|+++|+++|+.||.|.++++.. +.  .++. ++|||||+|.+.++|+.|+..+|+..+++..+.
T Consensus         2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~-~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~   78 (88)
T 4a8x_A            2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPV-ER--MHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEIT   78 (88)
T ss_dssp             CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCE-ET--TEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEe-CC--CCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEE
Confidence            3578999999999999999999999999999999943 22  2233 899999999999999999985554444444444


Q ss_pred             eec
Q psy14559         88 TPY   90 (405)
Q Consensus        88 v~~   90 (405)
                      +.+
T Consensus        79 v~~   81 (88)
T 4a8x_A           79 ATA   81 (88)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=3.8e-14  Score=117.74  Aligned_cols=71  Identities=14%  Similarity=0.281  Sum_probs=59.5

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--C---CCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEee
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--E---NDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFH  239 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~---~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~  239 (405)
                      .++|||+|||+++++++|+++|++||.|. +.++.+  +   |.++|||||+|.+.++|++|+. |+  .+.|+.|.+..
T Consensus         8 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~~   84 (114)
T 2dnl_A            8 SRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCVS   84 (114)
T ss_dssp             CCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEEC
T ss_pred             CCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEecc
Confidence            68999999999999999999999999999 777654  3   6889999999999999999998 72  25555554443

>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A

Probab=99.49  E-value=2.6e-14  Score=114.24  Aligned_cols=79  Identities=13%  Similarity=0.002  Sum_probs=62.2

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      .+..++|||+|||+++|+++|+++|+.||.|.++.+...   ..+++++|||||+|.+.++|+.|+..+|...+++..+.
T Consensus        12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~---~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~   88 (95)
T 2ek1_A           12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKY---NEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVK   88 (95)
T ss_dssp             ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEE---CTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEe---CCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEE
Confidence            556799999999999999999999999999998888443   24678899999999999999999975454444444444


Q ss_pred             ee
Q psy14559         88 TP   89 (405)
Q Consensus        88 v~   89 (405)
                      +.
T Consensus        89 v~   90 (95)
T 2ek1_A           89 LS   90 (95)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}

Probab=99.49  E-value=8.1e-14  Score=114.03  Aligned_cols=80  Identities=10%  Similarity=0.120  Sum_probs=65.9

Q ss_pred             CCCCcEEEEcCCCCCC------CHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccc
Q psy14559          8 PVKTKVVQVANIAPQA------TRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFI   81 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~v------TeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~   81 (405)
                      ....++|||+|||+.+      |+++|+++|+.||.|.+|++ +.    .+++++|||||+|.+.++|+.|+..+|+..+
T Consensus        12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i-~~----~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~   86 (105)
T 2nlw_A           12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFY-PE----EDGKTKGYIFLEYASPAHAVDAVKNADGYKL   86 (105)
T ss_dssp             CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEEC-CC----BTTBSCCEEEEEECSSSHHHHHHHHCSSEEC
T ss_pred             CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEe-eC----CCCCeeeEEEEEECCHHHHHHHHHHhCCccc
Confidence            4457899999999999      89999999999999999998 32    3578899999999999999999986665555


Q ss_pred             cce-eEEeecCC
Q psy14559         82 DRA-LVVTPYNS   92 (405)
Q Consensus        82 ~~~-~~vv~~~~   92 (405)
                      ++. .+.+.++.
T Consensus        87 ~g~~~l~V~~a~   98 (105)
T 2nlw_A           87 DKQHTFRVNLFT   98 (105)
T ss_dssp             STTCEEEEECSC
T ss_pred             CCCceEEEEEcc
Confidence            554 55555544

>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*

Probab=99.49  E-value=6.7e-14  Score=115.06  Aligned_cols=81  Identities=17%  Similarity=0.218  Sum_probs=65.8

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      ..+.++|||+|||+++|+++|+++|+.||+|.+|++ +.  +..++.++|||||+|.+.++|..|+..+|+..+++..+.
T Consensus        23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~--~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~   99 (110)
T 1oo0_B           23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHL-NL--DRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ   99 (110)
T ss_dssp             BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEC-CB--CTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-Ee--cCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence            445689999999999999999999999999999999 33  234678899999999999999999985555445555555


Q ss_pred             eecC
Q psy14559         88 TPYN   91 (405)
Q Consensus        88 v~~~   91 (405)
                      +.++
T Consensus       100 V~~a  103 (110)
T 1oo0_B          100 VDWC  103 (110)
T ss_dssp             EEES
T ss_pred             EEEc
Confidence            5443

>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=9.6e-14  Score=114.77  Aligned_cols=81  Identities=14%  Similarity=0.041  Sum_probs=66.2

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      ....++|||+|||+++|+++|+++|+.||+|.+|++ ..+.   +++++|||||+|.+.++|+.|+..+|...+++..+.
T Consensus        12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i-~~~~---~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~   87 (114)
T 2do0_A           12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADI-LEDK---DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMH   87 (114)
T ss_dssp             CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEE-EECT---TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-EECC---CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEE
Confidence            456799999999999999999999999999999999 4333   378899999999999999999985555445555555


Q ss_pred             eecCC
Q psy14559         88 TPYNS   92 (405)
Q Consensus        88 v~~~~   92 (405)
                      +.+..
T Consensus        88 v~~a~   92 (114)
T 2do0_A           88 VKMDE   92 (114)
T ss_dssp             EEECS
T ss_pred             EEEcc
Confidence            55443

>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.49  E-value=4.5e-14  Score=117.27  Aligned_cols=79  Identities=10%  Similarity=0.024  Sum_probs=65.8

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCce-EEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKV-EDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALV   86 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I-~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~   86 (405)
                      +.+.++|||+|||+++|+++|+++|+.||.| .+|+| +.+  . +++++|||||+|.+.++|+.|+.+ |...+++..+
T Consensus        12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i-~~d--~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i   86 (114)
T 2cpy_A           12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHV-LVD--N-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREA   86 (114)
T ss_dssp             CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEE-CCC--T-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEE
T ss_pred             CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEE-EEC--C-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEE
Confidence            5677999999999999999999999999999 88998 433  2 688999999999999999999988 5555555555


Q ss_pred             EeecC
Q psy14559         87 VTPYN   91 (405)
Q Consensus        87 vv~~~   91 (405)
                      .+.++
T Consensus        87 ~v~~a   91 (114)
T 2cpy_A           87 FVHVV   91 (114)
T ss_dssp             EEEEE
T ss_pred             EEEEC
Confidence            55443

>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.49  E-value=1.4e-13  Score=111.87  Aligned_cols=80  Identities=14%  Similarity=0.211  Sum_probs=64.7

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      ..+.++|||+|||+++|+++|+++|+.|| |.+|++.. +  ..+++++|||||+|.+.++|+.|+.+++..+.+ ..+.
T Consensus        12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~-~--~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g-~~l~   86 (103)
T 2dng_A           12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVR-D--KDTDKFKGFCYVEFDEVDSLKEALTYDGALLGD-RSLR   86 (103)
T ss_dssp             SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEE-C--SSSCSEEEEEEEEESSHHHHHHHGGGTTCEETT-EECE
T ss_pred             CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEee-c--CCCCccceEEEEEECCHHHHHHHHhhCCCeECC-eEEE
Confidence            56679999999999999999999999997 99999943 2  346889999999999999999999555544444 4444


Q ss_pred             eecCC
Q psy14559         88 TPYNS   92 (405)
Q Consensus        88 v~~~~   92 (405)
                      +.+..
T Consensus        87 V~~a~   91 (103)
T 2dng_A           87 VDIAE   91 (103)
T ss_dssp             EEECC
T ss_pred             EEEec
Confidence            55444

>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=6.8e-14  Score=113.76  Aligned_cols=81  Identities=12%  Similarity=0.076  Sum_probs=66.6

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhcc-CCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCcc-cccee
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGY-LGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVF-IDRAL   85 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~-~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~-~~~~~   85 (405)
                      +.+.++|||+|||+++|+++|+++|+. ||.|.+|++ +.+  . ++.++|||||+|.+.++|..|+..++... +++..
T Consensus         6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i-~~~--~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~   81 (104)
T 2dhg_A            6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKV-VLD--Q-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKP   81 (104)
T ss_dssp             SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEE-EEC--T-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSC
T ss_pred             CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEE-EEC--C-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEe
Confidence            567899999999999999999999999 999999999 433  2 57899999999999999999998655544 55555


Q ss_pred             EEeecCC
Q psy14559         86 VVTPYNS   92 (405)
Q Consensus        86 ~vv~~~~   92 (405)
                      +.+.++.
T Consensus        82 l~v~~a~   88 (104)
T 2dhg_A           82 VRLSVAI   88 (104)
T ss_dssp             CCCCBCC
T ss_pred             EEEEEcc
Confidence            5554443

>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}

Probab=99.48  E-value=7e-14  Score=123.02  Aligned_cols=80  Identities=15%  Similarity=0.094  Sum_probs=66.6

Q ss_pred             CCcEEEEcCCCCCCCHHHHHHHhccCC--ceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559         10 KTKVVQVANIAPQATRDQMQTLFGYLG--KVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus        10 ~~~tLfVgNLp~~vTeedLr~lFs~~G--~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      ..++|||+|||+++|+++|+++|+.||  +|.+|++..   |..+++++|||||+|.+.++|+.|+..+|+..+++..+.
T Consensus        54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~---d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~  130 (156)
T 3n9u_C           54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAE---NRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVD  130 (156)
T ss_dssp             --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEE---CTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEe---cCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeE
Confidence            568999999999999999999999999  999999943   335788999999999999999999987666666666655


Q ss_pred             eecCC
Q psy14559         88 TPYNS   92 (405)
Q Consensus        88 v~~~~   92 (405)
                      +.++.
T Consensus       131 V~~a~  135 (156)
T 3n9u_C          131 VRPAT  135 (156)
T ss_dssp             EEECC
T ss_pred             EEEcC
Confidence            55554

>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}

Probab=99.48  E-value=1.9e-14  Score=116.60  Aligned_cols=72  Identities=17%  Similarity=0.228  Sum_probs=58.1

Q ss_pred             cEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEeecC
Q psy14559         12 KVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTPYN   91 (405)
Q Consensus        12 ~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~~~   91 (405)
                      ++|||+|||+++|+++|+++|+.||+|.+|++ +.+       ++|||||+|.+.++|+.|+..++...+++..+.+.+.
T Consensus         1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i-~~~-------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a   72 (101)
T 2hvz_A            1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-ARN-------PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELS   72 (101)
T ss_dssp             CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEE-ESS-------SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEES
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-eeC-------CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEc
Confidence            58999999999999999999999999999999 321       5899999999999999999754443444444444433

>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1

Probab=99.48  E-value=1.3e-13  Score=118.03  Aligned_cols=82  Identities=17%  Similarity=0.168  Sum_probs=67.3

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      ....++|||+|||+++|+++|+++|+.||+|.+|++.. +.  .+++++|||||+|.+.++|..|+..+|...+++..+.
T Consensus        39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~-~~--~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~  115 (139)
T 1u6f_A           39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVC-DR--ETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLK  115 (139)
T ss_dssp             TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEE-ET--TTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE-cC--CCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence            55679999999999999999999999999999999943 22  3578899999999999999999986555555555555


Q ss_pred             eecCC
Q psy14559         88 TPYNS   92 (405)
Q Consensus        88 v~~~~   92 (405)
                      +.++.
T Consensus       116 v~~a~  120 (139)
T 1u6f_A          116 VALAA  120 (139)
T ss_dssp             EEESS
T ss_pred             EEECC
Confidence            55444

>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.48  E-value=3.7e-14  Score=115.24  Aligned_cols=82  Identities=17%  Similarity=0.163  Sum_probs=66.5

Q ss_pred             CCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEe
Q psy14559          9 VKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVT   88 (405)
Q Consensus         9 ~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv   88 (405)
                      ...++|||+|||+++|+++|+++|+.||.|.+|++.. +  ..++.++|||||+|.+.++|+.|+..+|+..+++..+.+
T Consensus         6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~-~--~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v   82 (104)
T 1p1t_A            6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVY-D--RETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV   82 (104)
T ss_dssp             HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEE-E--TTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEE
T ss_pred             CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEe-C--CCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Confidence            4568999999999999999999999999999999943 2  236788999999999999999999755555455555555


Q ss_pred             ecCCC
Q psy14559         89 PYNSG   93 (405)
Q Consensus        89 ~~~~~   93 (405)
                      .++..
T Consensus        83 ~~a~~   87 (104)
T 1p1t_A           83 DNAAS   87 (104)
T ss_dssp             EETTC
T ss_pred             EeCCC
Confidence            55543

>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A

Probab=99.48  E-value=2.6e-14  Score=109.15  Aligned_cols=72  Identities=19%  Similarity=0.372  Sum_probs=61.3

Q ss_pred             EEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559         13 VVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus        13 tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      +|||+|||+++|+++|+++|+.||+|.+|++ +.  +..++.++|||||+|.+.++|+.|+..++..+.++.+.+
T Consensus         1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i-~~--~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v   72 (75)
T 1iqt_A            1 KIFVGGLSPDTPEEKIREYFGGFGEVESIEL-PM--DNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEI   72 (75)
T ss_dssp             CEEESCCCSSCCHHHHHHHHHHHSCCSEECC-CC--SCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCE
T ss_pred             CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-Ee--cCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEE
Confidence            6999999999999999999999999999998 43  234578899999999999999999988666655555443

>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.48  E-value=5.1e-14  Score=113.26  Aligned_cols=81  Identities=11%  Similarity=-0.007  Sum_probs=65.3

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      ....++|||+|||+++|+++|+++|+.||.|.++.+...   ..+++++|||||+|.+.++|+.|+..+|...+++..+.
T Consensus        12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~---~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~   88 (98)
T 2cqp_A           12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKY---NEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVK   88 (98)
T ss_dssp             CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEE---CSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEE---CCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence            556799999999999999999999999999998777433   24678899999999999999999966555555555444


Q ss_pred             eecC
Q psy14559         88 TPYN   91 (405)
Q Consensus        88 v~~~   91 (405)
                      +.+.
T Consensus        89 V~~a   92 (98)
T 2cqp_A           89 LVLG   92 (98)
T ss_dssp             EEES
T ss_pred             EEEc
Confidence            4443

>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.48  E-value=1.6e-13  Score=112.75  Aligned_cols=79  Identities=14%  Similarity=0.142  Sum_probs=65.0

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      ..+.++|||+|||+++|+++|+++|+.||.|.+|++ ..     ++.+++||||+|.+.++|+.|++.+|...+++..+.
T Consensus        19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i-~~-----~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~   92 (109)
T 1x4a_A           19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDL-KN-----RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLR   92 (109)
T ss_dssp             CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE-CC-----SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-EE-----CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence            456799999999999999999999999999999999 32     244799999999999999999965555555555556


Q ss_pred             eecCC
Q psy14559         88 TPYNS   92 (405)
Q Consensus        88 v~~~~   92 (405)
                      +.+..
T Consensus        93 V~~a~   97 (109)
T 1x4a_A           93 VEFPR   97 (109)
T ss_dssp             EECCC
T ss_pred             EEEcc
Confidence            66554

>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.48  E-value=8.6e-14  Score=114.97  Aligned_cols=83  Identities=11%  Similarity=0.095  Sum_probs=67.4

Q ss_pred             CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceE--------EEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCC
Q psy14559          7 APVKTKVVQVANIAPQATRDQMQTLFGYLGKVE--------DLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNT   78 (405)
Q Consensus         7 ~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~--------~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~   78 (405)
                      ...+.++|||+|||+++|+++|+++|+.||.|.        .|++ ..  +..+++++|||||+|.+.++|+.|+..+|.
T Consensus        11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i-~~--~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g   87 (113)
T 2cpe_A           11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHI-YL--DKETGKPKGDATVSYEDPPTAKAAVEWFDG   87 (113)
T ss_dssp             CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEEC-CB--CTTTCSBCSEEEEEBSSHHHHHHHHHHHTT
T ss_pred             cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEE-EE--eCCCCCeeeEEEEEECCHHHHHHHHHHcCC
Confidence            456789999999999999999999999999999        5888 33  334688899999999999999999986555


Q ss_pred             ccccceeEEeecCC
Q psy14559         79 VFIDRALVVTPYNS   92 (405)
Q Consensus        79 ~~~~~~~~vv~~~~   92 (405)
                      ..+++..+.+.++.
T Consensus        88 ~~~~g~~l~V~~a~  101 (113)
T 2cpe_A           88 KDFQGSKLKVSLAR  101 (113)
T ss_dssp             CEETTEECEEECSS
T ss_pred             CccCCCEEEEEECC
Confidence            55555555555544

>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.47  E-value=1.1e-13  Score=114.58  Aligned_cols=75  Identities=21%  Similarity=0.346  Sum_probs=61.8

Q ss_pred             CcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEee
Q psy14559         11 TKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTP   89 (405)
Q Consensus        11 ~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~   89 (405)
                      .++|||+|||+++|+++|+++|+.||.|.+|++ ..  +..++.++|||||+|.+.++|+.|+.+++..+ ++..+.+.
T Consensus        25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~--~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~-~g~~l~V~   99 (114)
T 2cq4_A           25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRI-IS--DRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRL-LGVPIIVQ   99 (114)
T ss_dssp             HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEE-CC--SCCSSSCCCCEEEEESCGGGHHHHHHHTTEEE-TTEEEEEE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEE-Ee--cCCCCccCcEEEEEeCcHHHHHHHHHcCCCEe-CCeEEEEE
Confidence            479999999999999999999999999999999 33  33457889999999999999999994444444 44444444

>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.47  E-value=1.8e-13  Score=111.37  Aligned_cols=80  Identities=15%  Similarity=0.184  Sum_probs=64.0

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCC-CccccEEEEEecchhhHHHHHhccCCccccceeE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSI-PVQSRICYVKFFDEKCVGISQHLTNTVFIDRALV   86 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~-~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~   86 (405)
                      ..+.++|||+|||+++|+++|+++|+.|| |.+|++ +.+  ..+ ++++|||||+|.+.++|+.|+.+++..+.++.+ 
T Consensus        12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i-~~~--~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l-   86 (104)
T 1wi8_A           12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRL-PRE--PSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRI-   86 (104)
T ss_dssp             SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEEC-CBC--SSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEEC-
T ss_pred             CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEE-ecC--CCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEE-
Confidence            45679999999999999999999999999 999999 433  234 788999999999999999999555555545444 


Q ss_pred             EeecCC
Q psy14559         87 VTPYNS   92 (405)
Q Consensus        87 vv~~~~   92 (405)
                      .+.++.
T Consensus        87 ~V~~a~   92 (104)
T 1wi8_A           87 RVDVAD   92 (104)
T ss_dssp             EEEECC
T ss_pred             EEEEcc
Confidence            444433

>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.47  E-value=1.3e-13  Score=107.86  Aligned_cols=74  Identities=8%  Similarity=0.279  Sum_probs=61.9

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhcc-CCccccceeE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLT-NTVFIDRALV   86 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~-n~~~~~~~~~   86 (405)
                      ....++|||+|||+++|+++|+++|++||+|.+|++..         ++|||||+|.+.++|+.|+..+ +...+++..+
T Consensus         9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~---------~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l   79 (85)
T 2ytc_A            9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ---------RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRL   79 (85)
T ss_dssp             CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG---------GGTEEEEEESSHHHHHHHHHTTTTTCEETTEEC
T ss_pred             CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC---------CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEE
Confidence            56789999999999999999999999999999999931         4799999999999999999854 6655555554


Q ss_pred             Eeec
Q psy14559         87 VTPY   90 (405)
Q Consensus        87 vv~~   90 (405)
                      .+.+
T Consensus        80 ~v~~   83 (85)
T 2ytc_A           80 NVKW   83 (85)
T ss_dssp             CEEE
T ss_pred             EEEe
Confidence            4443

>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.47  E-value=9.9e-14  Score=114.66  Aligned_cols=85  Identities=15%  Similarity=0.235  Sum_probs=68.4

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHH---HHhccCCceEEEEEeeccCCC-CCCccccEEEEEecchhhHHHHHhccCCccccc
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQ---TLFGYLGKVEDLRLYPIARDV-SIPVQSRICYVKFFDEKCVGISQHLTNTVFIDR   83 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr---~lFs~~G~I~~v~i~~~~~d~-~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~   83 (405)
                      ....++|||+|||+++|+++|+   ++|++||+|.+|++ +.+... ..++++|||||+|.+.++|+.|+..+|...+++
T Consensus        12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i-~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g   90 (111)
T 2cpi_A           12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVI-NNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG   90 (111)
T ss_dssp             CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEE-ECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred             ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEE-ecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence            4456899999999999999999   99999999999999 433211 123567999999999999999998766666666


Q ss_pred             eeEEeecCCC
Q psy14559         84 ALVVTPYNSG   93 (405)
Q Consensus        84 ~~~vv~~~~~   93 (405)
                      ..+.+.++..
T Consensus        91 r~l~V~~a~~  100 (111)
T 2cpi_A           91 RTLKASLGTT  100 (111)
T ss_dssp             EEEEEESCCC
T ss_pred             EEEEEEeccc
Confidence            6666666553

>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.47  E-value=1.2e-13  Score=112.67  Aligned_cols=77  Identities=12%  Similarity=0.172  Sum_probs=62.1

Q ss_pred             CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhcc--CCccccce
Q psy14559          7 APVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLT--NTVFIDRA   84 (405)
Q Consensus         7 ~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~--n~~~~~~~   84 (405)
                      ...++++|||+|||+.+|+++|+++|++||.|.+|.+ +.        .+|||||+|.+.++|..|+..+  +...+++.
T Consensus        11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i-~~--------~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr   81 (101)
T 2cq1_A           11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILM-LK--------GKNQAFLELATEEAAITMVNYYSAVTPHLRNQ   81 (101)
T ss_dssp             CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEE-ET--------TTTEEEEEESSHHHHHHHHHHHHHSCCEETTE
T ss_pred             cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-EC--------CCCEEEEEECCHHHHHHHHHHhccCCceECCc
Confidence            3467799999999999999999999999999999988 22        2899999999999999998643  34445555


Q ss_pred             eEEeecCC
Q psy14559         85 LVVTPYNS   92 (405)
Q Consensus        85 ~~vv~~~~   92 (405)
                      .+.+.++.
T Consensus        82 ~l~V~~a~   89 (101)
T 2cq1_A           82 PIYIQYSN   89 (101)
T ss_dssp             ECEEEECS
T ss_pred             EEEEEEcC
Confidence            55555544

>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.47  E-value=9.3e-14  Score=113.98  Aligned_cols=76  Identities=13%  Similarity=0.174  Sum_probs=61.1

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccC--Ccccccee
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTN--TVFIDRAL   85 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n--~~~~~~~~   85 (405)
                      ..++++|||+|||+.+|+++|+++|++||+|.+|.+. .        .+|||||+|.+.++|..|+..++  ...+++..
T Consensus        12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~-~--------~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~   82 (104)
T 1wex_A           12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMM-P--------FKRQALVEFENIDSAKECVTFAADVPVYIAGQQ   82 (104)
T ss_dssp             CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEE-T--------TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSB
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-C--------CCCEEEEEECCHHHHHHHHHHhccCCceECCEE
Confidence            5568999999999999999999999999999999982 1        37999999999999999997432  33344444


Q ss_pred             EEeecCC
Q psy14559         86 VVTPYNS   92 (405)
Q Consensus        86 ~vv~~~~   92 (405)
                      +.+.+..
T Consensus        83 l~V~~a~   89 (104)
T 1wex_A           83 AFFNYST   89 (104)
T ss_dssp             CEEEECS
T ss_pred             EEEEEcc
Confidence            4455443

>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.47  E-value=8.4e-14  Score=116.55  Aligned_cols=78  Identities=15%  Similarity=0.119  Sum_probs=63.9

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCc---eEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccce
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGK---VEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRA   84 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~---I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~   84 (405)
                      ....++|||+|||+++|+++|+++|+.||.   |.+|+| +.+.  . ++++|||||+|.+.++|+.|+.+++..+.++.
T Consensus        14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i-~~~~--~-g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~   89 (118)
T 2db1_A           14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHF-IYTR--E-GRQSGEAFVELESEDDVKLALKKDRESMGHRY   89 (118)
T ss_dssp             BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEE-EECS--S-SCEEEEEEEEBSSHHHHHHHGGGTTEEETTEE
T ss_pred             CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEE-EECC--C-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeE
Confidence            456799999999999999999999999999   899999 4433  2 78899999999999999999996554444444


Q ss_pred             eEEee
Q psy14559         85 LVVTP   89 (405)
Q Consensus        85 ~~vv~   89 (405)
                      +.|..
T Consensus        90 i~V~~   94 (118)
T 2db1_A           90 IEVFK   94 (118)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            44433

>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.47  E-value=1e-13  Score=113.63  Aligned_cols=83  Identities=8%  Similarity=0.144  Sum_probs=67.4

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCc-eEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccC--Cccccce
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGK-VEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTN--TVFIDRA   84 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~-I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n--~~~~~~~   84 (405)
                      ..+.++|||+|||+++|+++|+++|+.||. |.+|.+...+  ..++.++|||||+|.+.++|..|+..++  ...+++.
T Consensus         5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~--~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~   82 (109)
T 2dis_A            5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASA--ADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH   82 (109)
T ss_dssp             CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSS--CTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTB
T ss_pred             ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccC--CCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCC
Confidence            456899999999999999999999999999 9999984233  3457889999999999999999998653  3555555


Q ss_pred             eEEeecCC
Q psy14559         85 LVVTPYNS   92 (405)
Q Consensus        85 ~~vv~~~~   92 (405)
                      .+.+.++.
T Consensus        83 ~l~V~~a~   90 (109)
T 2dis_A           83 QIAVDWAE   90 (109)
T ss_dssp             CCEEEESC
T ss_pred             eEEEEEcC
Confidence            55555544

>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.47  E-value=1.7e-13  Score=108.59  Aligned_cols=75  Identities=13%  Similarity=0.166  Sum_probs=62.6

Q ss_pred             CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeE
Q psy14559          7 APVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALV   86 (405)
Q Consensus         7 ~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~   86 (405)
                      ++.+.++|||+|||+++|+++|+++|+.||+|.+|++.           ++||||+|.+.++|+.|+..+|...+++..+
T Consensus         4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-----------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l   72 (90)
T 2dnq_A            4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-----------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNI   72 (90)
T ss_dssp             CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-----------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBC
T ss_pred             CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-----------CCEEEEEECCHHHHHHHHHHhcCCccCCcEE
Confidence            46788999999999999999999999999999999992           6899999999999999997555554544555


Q ss_pred             EeecCC
Q psy14559         87 VTPYNS   92 (405)
Q Consensus        87 vv~~~~   92 (405)
                      .+.+..
T Consensus        73 ~v~~a~   78 (90)
T 2dnq_A           73 NVEASK   78 (90)
T ss_dssp             EEECSS
T ss_pred             EEEECC
Confidence            555444

>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A

Probab=99.46  E-value=3.2e-13  Score=110.96  Aligned_cols=76  Identities=18%  Similarity=0.215  Sum_probs=68.0

Q ss_pred             CcEEEEeCCCC-----CCCHHHHHHHHhcCCCeeEEEEeccC---CCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEE
Q psy14559        166 RRTLVAINIEE-----SVSPQELVDFFQKVGTVNYIRFCTRE---NDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQ  236 (405)
Q Consensus       166 ~rtvfV~NLp~-----~~tee~L~~~F~~~G~I~~i~i~~~~---~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~  236 (405)
                      .++|++.|+..     +-++++|++.|++||.|.+|.++.+.   +.++|||||+|.+.++|.+|+. |||..+.||.|.
T Consensus         8 s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~   87 (105)
T 2pe8_A            8 TKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVK   87 (105)
T ss_dssp             CSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred             CCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEEE
Confidence            78999999963     23789999999999999999998652   5789999999999999999998 999999999999


Q ss_pred             Eeecc
Q psy14559        237 MFHST  241 (405)
Q Consensus       237 V~~a~  241 (405)
                      |.++.
T Consensus        88 v~~a~   92 (105)
T 2pe8_A           88 ACFYN   92 (105)
T ss_dssp             EEECC
T ss_pred             EEEcC
Confidence            99985

>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.46  E-value=3.3e-13  Score=109.58  Aligned_cols=80  Identities=14%  Similarity=0.121  Sum_probs=65.6

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      ..+.++|||+|||+++|+++|+++|+.||+|.+|++. .+  ..+++++|||||+|.+.++|+.|+..  ...+++..+.
T Consensus        12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~-~~--~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~l~   86 (103)
T 2cqg_A           12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVK-KD--LKTGHSKGFGFVRFTEYETQVKVMSQ--RHMIDGRWCD   86 (103)
T ss_dssp             CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEE-EC--SSSCSEEEEEEEEESSHHHHHHHHHS--CEEETTEEEE
T ss_pred             cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEE-ec--CCCCCccceEEEEECCHHHHHHHHHc--CCeeCCeEEE
Confidence            4567899999999999999999999999999999994 32  24688999999999999999999983  3345555555


Q ss_pred             eecCC
Q psy14559         88 TPYNS   92 (405)
Q Consensus        88 v~~~~   92 (405)
                      +.+..
T Consensus        87 v~~a~   91 (103)
T 2cqg_A           87 CKLPN   91 (103)
T ss_dssp             EECCC
T ss_pred             EEecC
Confidence            55544

>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A

Probab=99.46  E-value=8.4e-14  Score=115.61  Aligned_cols=79  Identities=9%  Similarity=0.051  Sum_probs=64.2

Q ss_pred             CCCCCcEEEEcCCCCCCCHHHHHHHhccCC-ceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCcccccee
Q psy14559          7 APVKTKVVQVANIAPQATRDQMQTLFGYLG-KVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRAL   85 (405)
Q Consensus         7 ~~~~~~tLfVgNLp~~vTeedLr~lFs~~G-~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~   85 (405)
                      .+...++|||+|||+++|+++|+++|+.|| +|..+.+. .      ..++|||||+|.+.++|+.|+..+|+..+++..
T Consensus        24 ~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~-~------~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~   96 (111)
T 2jvr_A           24 LPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVN-T------RDFDGTGALEFPSEEILVEALERLNNIEFRGSV   96 (111)
T ss_dssp             -CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECS-S------CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEE
T ss_pred             CCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEE-c------CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence            466778999999999999999999999999 99999882 1      236899999999999999999766655555555


Q ss_pred             EEeecCC
Q psy14559         86 VVTPYNS   92 (405)
Q Consensus        86 ~vv~~~~   92 (405)
                      +.+.+..
T Consensus        97 i~V~~a~  103 (111)
T 2jvr_A           97 ITVERDD  103 (111)
T ss_dssp             EEEEESC
T ss_pred             EEEEECC
Confidence            5555443

>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.46  E-value=1.7e-13  Score=110.13  Aligned_cols=77  Identities=8%  Similarity=0.140  Sum_probs=62.3

Q ss_pred             CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCcccc--ce
Q psy14559          7 APVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFID--RA   84 (405)
Q Consensus         7 ~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~--~~   84 (405)
                      ...+.++|||+|||+++|+++|+++|+.||+|.+|++ ..        .++||||+|.+.++|+.|+..+|...++  +.
T Consensus        13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~-~~--------~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~   83 (97)
T 1why_A           13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDH-VK--------GDSFAYIQYESLDAAQAACAKMRGFPLGGPDR   83 (97)
T ss_dssp             CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEE-CS--------SSCCEEEEESSHHHHHHHHHHHTTCBCSSSSC
T ss_pred             CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE-eC--------CCCEEEEEECCHHHHHHHHHHHCCCEeCCCCc
Confidence            3567799999999999999999999999999999998 21        2789999999999999999855544444  44


Q ss_pred             eEEeecCC
Q psy14559         85 LVVTPYNS   92 (405)
Q Consensus        85 ~~vv~~~~   92 (405)
                      .+.+.++.
T Consensus        84 ~l~V~~a~   91 (97)
T 1why_A           84 RLRVDFAK   91 (97)
T ss_dssp             BCEEEECC
T ss_pred             EEEEEECC
Confidence            45555443

>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.46  E-value=1.5e-13  Score=110.54  Aligned_cols=79  Identities=18%  Similarity=0.125  Sum_probs=64.5

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHH----HHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccc
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQ----TLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDR   83 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr----~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~   83 (405)
                      ..+.++|||+|||+++|+++|+    ++|+.||+|.+|++ +.++  . +  ++||||+|.+.++|+.|+..+|...+++
T Consensus         6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i-~~~~--~-~--rg~afV~f~~~~~A~~Ai~~l~g~~~~g   79 (96)
T 2dgx_A            6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVEL-SPHT--D-Y--QLKAVVQMENLQDAIGAVNSLHRYKIGS   79 (96)
T ss_dssp             CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEE-CSCC--S-T--TCCEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred             CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEE-EeCC--C-C--CeEEEEEECCHHHHHHHHHHhCCCEECC
Confidence            5567899999999999999999    99999999999999 4332  2 1  8899999999999999998666555555


Q ss_pred             eeEEeecCC
Q psy14559         84 ALVVTPYNS   92 (405)
Q Consensus        84 ~~~vv~~~~   92 (405)
                      ..+.+.++.
T Consensus        80 r~l~V~~a~   88 (96)
T 2dgx_A           80 KKILVSLAT   88 (96)
T ss_dssp             EEEEEEECC
T ss_pred             eEEEEEEcC
Confidence            555555544

>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.46  E-value=1.7e-13  Score=113.81  Aligned_cols=78  Identities=14%  Similarity=0.162  Sum_probs=65.7

Q ss_pred             CcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEeec
Q psy14559         11 TKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTPY   90 (405)
Q Consensus        11 ~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~~   90 (405)
                      .++|||+|||+++|+++|+++|+.||.|.+|+|. .  +..++.++|||||+|.+.++|+.|+.. +...+++..+.+.+
T Consensus        27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~-~--~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~  102 (116)
T 1x4b_A           27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVM-R--DPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKR  102 (116)
T ss_dssp             HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEE-C--CTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEEC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-E--CCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEE
Confidence            4899999999999999999999999999999993 3  334678899999999999999999988 55555555555555


Q ss_pred             CC
Q psy14559         91 NS   92 (405)
Q Consensus        91 ~~   92 (405)
                      +.
T Consensus       103 a~  104 (116)
T 1x4b_A          103 AV  104 (116)
T ss_dssp             CS
T ss_pred             CC
Confidence            44

>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}

Probab=99.46  E-value=1.9e-13  Score=116.83  Aligned_cols=79  Identities=14%  Similarity=0.225  Sum_probs=66.3

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      ..+.++|||+|||+++|+++|+++|+.||+|.++++ +.  +..+++++|||||+|.+.++|+.|+..+|...+++..+.
T Consensus        60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i-~~--~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~  136 (140)
T 2ku7_A           60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQI-PL--DYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR  136 (140)
T ss_dssp             CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEEC-CC--CTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEE
T ss_pred             CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEE-ee--cCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence            556899999999999999999999999999999999 33  334678899999999999999999976666555555555


Q ss_pred             ee
Q psy14559         88 TP   89 (405)
Q Consensus        88 v~   89 (405)
                      +.
T Consensus       137 v~  138 (140)
T 2ku7_A          137 VN  138 (140)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*

Probab=99.46  E-value=1.3e-13  Score=116.17  Aligned_cols=82  Identities=13%  Similarity=0.146  Sum_probs=66.3

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      ..+.++|||+|||+++|+++|+++|+.||.|.+|.| +.  +..++.++|||||+|.+.++|+.|+..+|...+++..+.
T Consensus        19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~--~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~   95 (126)
T 3ex7_B           19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHL-NL--DRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS   95 (126)
T ss_dssp             CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEC-CB--CTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-Ee--cCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence            456789999999999999999999999999999999 33  334688899999999999999999975555445555555


Q ss_pred             eecCC
Q psy14559         88 TPYNS   92 (405)
Q Consensus        88 v~~~~   92 (405)
                      +.++.
T Consensus        96 v~~a~  100 (126)
T 3ex7_B           96 VDWCF  100 (126)
T ss_dssp             EEESE
T ss_pred             EEEec
Confidence            55443

>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.46  E-value=9e-14  Score=116.80  Aligned_cols=77  Identities=14%  Similarity=0.232  Sum_probs=61.8

Q ss_pred             CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccC--Cccccce
Q psy14559          7 APVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTN--TVFIDRA   84 (405)
Q Consensus         7 ~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n--~~~~~~~   84 (405)
                      ...+.++|||+|||+++|+++|+++|++||+|.+|++. .        .+|||||+|.+.++|..|+..++  ...+++.
T Consensus        27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~-~--------~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr   97 (119)
T 2ad9_A           27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLML-K--------GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQ   97 (119)
T ss_dssp             CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEE-G--------GGTEEEEECSCHHHHHHHHHHHHHHCCCBTTB
T ss_pred             cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEe-C--------CCCEEEEEECCHHHHHHHHHHhccCCceECCe
Confidence            35678999999999999999999999999999999993 2        27999999999999999997554  2344444


Q ss_pred             eEEeecCC
Q psy14559         85 LVVTPYNS   92 (405)
Q Consensus        85 ~~vv~~~~   92 (405)
                      .+.+.++.
T Consensus        98 ~l~V~~a~  105 (119)
T 2ad9_A           98 PIYIQFSN  105 (119)
T ss_dssp             CCEEEECS
T ss_pred             EEEEEEcc
Confidence            44444443

>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}

Probab=99.45  E-value=1.7e-13  Score=115.20  Aligned_cols=81  Identities=14%  Similarity=0.057  Sum_probs=66.3

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      ..+.++|||+|||+.+|+++|+++|+.||+|.+|++ ..+.   +++++|||||+|.+.++|+.|+..+|...+++..+.
T Consensus        32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i-~~~~---~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~  107 (124)
T 2kt5_A           32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAV-DYDR---SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMD  107 (124)
T ss_dssp             CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEE-ECCS---SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE-EECC---CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence            556789999999999999999999999999999999 4332   578899999999999999999985555555555555


Q ss_pred             eecCC
Q psy14559         88 TPYNS   92 (405)
Q Consensus        88 v~~~~   92 (405)
                      +.++.
T Consensus       108 V~~a~  112 (124)
T 2kt5_A          108 IQLVA  112 (124)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            54433

>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.45  E-value=2.6e-13  Score=107.65  Aligned_cols=79  Identities=13%  Similarity=0.157  Sum_probs=65.4

Q ss_pred             CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeE
Q psy14559          7 APVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALV   86 (405)
Q Consensus         7 ~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~   86 (405)
                      .+...++|||+|||+++|+++|+++|+.| .|.+|++.. +   .+++++|||||+|.+.++|+.|+. +|...+++..+
T Consensus         6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~-~---~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i   79 (91)
T 2dgw_A            6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVR-N---AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYI   79 (91)
T ss_dssp             CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEE-C---TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEE
T ss_pred             CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEE-C---CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEE
Confidence            35678999999999999999999999999 999999943 2   357889999999999999999999 66555555555


Q ss_pred             EeecC
Q psy14559         87 VTPYN   91 (405)
Q Consensus        87 vv~~~   91 (405)
                      .+.++
T Consensus        80 ~v~~a   84 (91)
T 2dgw_A           80 EVFRE   84 (91)
T ss_dssp             EEEEE
T ss_pred             EEEEC
Confidence            55443

>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}

Probab=99.45  E-value=1.2e-13  Score=111.79  Aligned_cols=76  Identities=18%  Similarity=0.312  Sum_probs=63.5

Q ss_pred             CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeE
Q psy14559          7 APVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALV   86 (405)
Q Consensus         7 ~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~   86 (405)
                      ++...++|||+|||+++|+++|+++|+.||.|.++++.         +++|||||+|.+.++|..|+..+|...+++..+
T Consensus        23 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~---------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l   93 (101)
T 2la4_A           23 APPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY---------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNL   93 (101)
T ss_dssp             SCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE---------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred             CCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe---------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence            35567999999999999999999999999999999992         358999999999999999997656555555555


Q ss_pred             EeecC
Q psy14559         87 VTPYN   91 (405)
Q Consensus        87 vv~~~   91 (405)
                      .+.++
T Consensus        94 ~V~~a   98 (101)
T 2la4_A           94 RTGWG   98 (101)
T ss_dssp             CCCBC
T ss_pred             EEEec
Confidence            55543

>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A

Probab=99.45  E-value=1.1e-13  Score=119.00  Aligned_cols=77  Identities=14%  Similarity=0.099  Sum_probs=63.6

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCc---eEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccce
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGK---VEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRA   84 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~---I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~   84 (405)
                      ....++|||+|||+++|+++|+++|+.||.   |.+|+| +.++  . ++++|||||+|.+.++|+.|+.+++..+.++.
T Consensus        41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i-~~d~--~-g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~  116 (136)
T 2hgl_A           41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHF-IYTR--E-GRQSGEAFVELGSEDDVKMALKKDRESMGHRY  116 (136)
T ss_dssp             CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEE-EECS--S-SCEEEEEEEECSSHHHHHHHHTTTEEESSSSE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEE-EECC--C-CCCCeEEEEEECCHHHHHHHHhcCCCEECCEE
Confidence            456789999999999999999999999999   899999 4443  3 78999999999999999999994444444554


Q ss_pred             eEEe
Q psy14559         85 LVVT   88 (405)
Q Consensus        85 ~~vv   88 (405)
                      +.|.
T Consensus       117 i~V~  120 (136)
T 2hgl_A          117 IEVF  120 (136)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4443

>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}

Probab=99.45  E-value=5.6e-14  Score=119.63  Aligned_cols=81  Identities=10%  Similarity=0.180  Sum_probs=66.3

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEE--EEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCc----cc
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVED--LRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTV----FI   81 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~--v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~----~~   81 (405)
                      ....++|||+|||+++|+++|+++|+.||.|.+  |+| +.  |..+++++|||||+|.+. +|..|+..+|..    .+
T Consensus        20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i-~~--d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~   95 (131)
T 2m2b_A           20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRV-IK--DKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTI   95 (131)
T ss_dssp             SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEEC-CB--CSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCG
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEE-EE--cCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccC
Confidence            456789999999999999999999999999977  888 43  345789999999999999 999999766665    55


Q ss_pred             cceeEEeecCC
Q psy14559         82 DRALVVTPYNS   92 (405)
Q Consensus        82 ~~~~~vv~~~~   92 (405)
                      ++..+.+.++.
T Consensus        96 ~gr~l~V~~a~  106 (131)
T 2m2b_A           96 DGKTINVEFAK  106 (131)
T ss_dssp             GGCCCCCEECC
T ss_pred             CCEEEEEEECC
Confidence            55555555544

>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.45  E-value=6.6e-14  Score=117.97  Aligned_cols=79  Identities=16%  Similarity=0.115  Sum_probs=63.4

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      ....++|||+|||+++|+++|+++|+.||.|.++.++...   .+++++|||||+|.+.++|+.|+.+++..+.++.+.|
T Consensus        22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~---~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V   98 (124)
T 1wel_A           22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYG---PNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQV   98 (124)
T ss_dssp             CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEEC---TTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEE
T ss_pred             CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEEC---CCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEE
Confidence            3456899999999999999999999999999885553432   3688999999999999999999995555555555544


Q ss_pred             ee
Q psy14559         88 TP   89 (405)
Q Consensus        88 v~   89 (405)
                      ..
T Consensus        99 ~~  100 (124)
T 1wel_A           99 HP  100 (124)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A

Probab=99.45  E-value=2.3e-13  Score=109.88  Aligned_cols=73  Identities=7%  Similarity=0.185  Sum_probs=61.4

Q ss_pred             CCCCcEEEEcCCCC-CCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeE
Q psy14559          8 PVKTKVVQVANIAP-QATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALV   86 (405)
Q Consensus         8 ~~~~~tLfVgNLp~-~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~   86 (405)
                      .++.++|||+|||+ ++|+++|+++|+.||.|.+|++           .+|||||+|.+.++|..|+..+|+..+++..+
T Consensus        19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i-----------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l   87 (97)
T 2xnq_A           19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI-----------KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKL   87 (97)
T ss_dssp             CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE-----------CSSEEEEEESSHHHHHHHHHHHTTSEETTEEC
T ss_pred             CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE-----------eCCEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence            56789999999998 9999999999999999999999           27899999999999999998555555544444


Q ss_pred             EeecC
Q psy14559         87 VTPYN   91 (405)
Q Consensus        87 vv~~~   91 (405)
                      .+.+.
T Consensus        88 ~V~~a   92 (97)
T 2xnq_A           88 ILEVS   92 (97)
T ss_dssp             EEEEC
T ss_pred             EEEec
Confidence            44443

>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.45  E-value=6.6e-14  Score=114.47  Aligned_cols=76  Identities=9%  Similarity=0.114  Sum_probs=60.7

Q ss_pred             CCCCcEEEEcCCCC-CCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccC--Cccccce
Q psy14559          8 PVKTKVVQVANIAP-QATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTN--TVFIDRA   84 (405)
Q Consensus         8 ~~~~~tLfVgNLp~-~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n--~~~~~~~   84 (405)
                      ..+.++|||+|||+ .+|+++|+++|++||+|.+|++. .        .++||||+|.+.++|..|+..+|  ...+++.
T Consensus        12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~-~--------~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr   82 (102)
T 1x4d_A           12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLIL-N--------KINEAFIEMATTEDAQAAVDYYTTTPALVFGK   82 (102)
T ss_dssp             CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEEC-S--------SSSCEEEEESSHHHHHHHHHHHHHSCCEETTE
T ss_pred             CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEE-c--------CCCEEEEEECCHHHHHHHHHHHcCCCceECCc
Confidence            55789999999999 99999999999999999999992 1        36899999999999999997543  2334444


Q ss_pred             eEEeecCC
Q psy14559         85 LVVTPYNS   92 (405)
Q Consensus        85 ~~vv~~~~   92 (405)
                      .+.+.++.
T Consensus        83 ~l~V~~a~   90 (102)
T 1x4d_A           83 PVRVHLSQ   90 (102)
T ss_dssp             ECEEEEEC
T ss_pred             EEEEEECC
Confidence            44444443

>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A

Probab=99.45  E-value=1.8e-13  Score=116.09  Aligned_cols=77  Identities=13%  Similarity=0.204  Sum_probs=63.5

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceE--EEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCcccccee
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVE--DLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRAL   85 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~--~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~   85 (405)
                      +...++|||+|||+++|+++|+++|+.| .|.  +|+| +.++  . ++++|||||+|.+.++|+.|+..++..+.++.+
T Consensus        39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i-~~d~--~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I  113 (126)
T 2hgm_A           39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITL-PVDP--E-GKITGEAFVQFASQELAEKALGKHKERIGHRYI  113 (126)
T ss_dssp             SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEEC-CCCS--S-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCC
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEE-EECC--C-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEE
Confidence            4457899999999999999999999999 666  8888 4443  3 889999999999999999999987755556655


Q ss_pred             EEee
Q psy14559         86 VVTP   89 (405)
Q Consensus        86 ~vv~   89 (405)
                      .|..
T Consensus       114 ~V~~  117 (126)
T 2hgm_A          114 EVFK  117 (126)
T ss_dssp             CCEE
T ss_pred             EEEE
Confidence            4433

>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.45  E-value=1.8e-13  Score=113.26  Aligned_cols=74  Identities=19%  Similarity=0.236  Sum_probs=62.1

Q ss_pred             CcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEee
Q psy14559         11 TKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTP   89 (405)
Q Consensus        11 ~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~   89 (405)
                      .++|||+|||+++|+++|+++|+.| .|.+|+| +.++   .++++|||||+|.+.++|+.|+.+++..+.++.+.|..
T Consensus        16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i-~~d~---~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~   89 (109)
T 2dnn_A           16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHL-LKDH---VGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSP   89 (109)
T ss_dssp             HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEE-CCCT---TCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEE-EECC---CCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEE
Confidence            4799999999999999999999999 8999999 4433   37899999999999999999997666555555555533

>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.44  E-value=1.9e-13  Score=110.32  Aligned_cols=76  Identities=13%  Similarity=0.246  Sum_probs=61.6

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      ..+.++|||+|||+.+|+++|+++|+.||+|.+|++ +        +++|||||+|.+.++|+.|+..++...+++..+.
T Consensus        12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~-~--------~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~   82 (99)
T 2cpj_A           12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFI-H--------KDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLR   82 (99)
T ss_dssp             CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEE-E--------TTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEE-e--------cCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEE
Confidence            556789999999999999999999999999999999 2        2389999999999999999965554444444444


Q ss_pred             eecCC
Q psy14559         88 TPYNS   92 (405)
Q Consensus        88 v~~~~   92 (405)
                      +.+..
T Consensus        83 v~~a~   87 (99)
T 2cpj_A           83 VRFAC   87 (99)
T ss_dssp             EEESS
T ss_pred             EEEcC
Confidence            44433

>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A

Probab=99.44  E-value=1.7e-13  Score=111.06  Aligned_cols=75  Identities=17%  Similarity=0.331  Sum_probs=62.5

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      ....++|||+|||+++|+++|+++|+.||.|.+|++ +.+.   +++++|||||+|.+.++|+.|+. ++..+.++.+.+
T Consensus         6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i-~~~~---~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v   80 (102)
T 2xs2_A            6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKI-ITDR---TGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKL   80 (102)
T ss_dssp             EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEE-EECT---TSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEE-EECC---CCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEE
Confidence            445799999999999999999999999999999999 4432   58899999999999999999998 444444444443

>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.44  E-value=9.8e-14  Score=117.31  Aligned_cols=75  Identities=13%  Similarity=0.136  Sum_probs=61.7

Q ss_pred             CCCcEEEEcCCCCCCCHHHHHHHhccCCce----EEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccce
Q psy14559          9 VKTKVVQVANIAPQATRDQMQTLFGYLGKV----EDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRA   84 (405)
Q Consensus         9 ~~~~tLfVgNLp~~vTeedLr~lFs~~G~I----~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~   84 (405)
                      ...++|||+|||+++|+++|+++|+.||+|    .+|+| +.+.   +++++|||||+|.+.++|+.|+..++..+.++.
T Consensus        21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i-~~d~---~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~   96 (123)
T 2dha_A           21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILF-VTYP---DGRPTGDAFVLFACEEYAQNALRKHKDLLGKRY   96 (123)
T ss_dssp             CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEE-EECT---TSCEEEEEEECCSSHHHHHHHHTTTTEESSSCE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEE-EECC---CCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeE
Confidence            456899999999999999999999999986    68988 4332   588999999999999999999988554444444


Q ss_pred             eEE
Q psy14559         85 LVV   87 (405)
Q Consensus        85 ~~v   87 (405)
                      +.+
T Consensus        97 i~V   99 (123)
T 2dha_A           97 IEL   99 (123)
T ss_dssp             ECC
T ss_pred             EEE
Confidence            333

>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}

Probab=99.44  E-value=1.1e-13  Score=112.12  Aligned_cols=76  Identities=16%  Similarity=0.211  Sum_probs=59.5

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALV   86 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~   86 (405)
                      ....++|||+|||+++|+++|+++|+.|| |.+|++ ..+.+ .+++++|||||+|.+.++|..|+.+++..+.++.+.
T Consensus        16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i-~~~~~-~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~   91 (100)
T 2j76_E           16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRL-PREPS-NPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIR   91 (100)
T ss_dssp             ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEEC-SCCTT-TTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCC
T ss_pred             CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEE-EecCC-cCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEE
Confidence            45679999999999999999999999999 999999 33211 357889999999999999999995555554444443

>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}

Probab=99.44  E-value=6.2e-14  Score=110.99  Aligned_cols=77  Identities=19%  Similarity=0.229  Sum_probs=62.8

Q ss_pred             cEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEeecC
Q psy14559         12 KVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTPYN   91 (405)
Q Consensus        12 ~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~~~   91 (405)
                      ++|||+|||+++|+++|+++|+.||+|.+|++ +.  +..++.++|||||+|.+.+ |..|+..+|+..+++..+.+.++
T Consensus         2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i-~~--~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a   77 (90)
T 2ki2_A            2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKL-IY--DRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEA   77 (90)
T ss_dssp             EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEE-CC--CSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC
T ss_pred             cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEE-EE--cCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEc
Confidence            68999999999999999999999999999999 33  3346788999999999999 99999766655555555544444


Q ss_pred             C
Q psy14559         92 S   92 (405)
Q Consensus        92 ~   92 (405)
                      .
T Consensus        78 ~   78 (90)
T 2ki2_A           78 N   78 (90)
T ss_dssp             -
T ss_pred             C
Confidence            3

>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X

Probab=99.43  E-value=3e-13  Score=118.31  Aligned_cols=83  Identities=17%  Similarity=0.301  Sum_probs=68.4

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      ..+.++|||+|||+++|+++|+++|+.||+|.+|+|.. +  ..++.+++||||+|.+.++|+.|+..+|...+++..+.
T Consensus        36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~-~--~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~  112 (156)
T 1h2v_Z           36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGL-D--KMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIR  112 (156)
T ss_dssp             TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE-C--TTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEe-c--CCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence            34679999999999999999999999999999999943 2  24678899999999999999999986555555556666


Q ss_pred             eecCCC
Q psy14559         88 TPYNSG   93 (405)
Q Consensus        88 v~~~~~   93 (405)
                      +.++..
T Consensus       113 V~~a~~  118 (156)
T 1h2v_Z          113 TDWDAG  118 (156)
T ss_dssp             EEEESC
T ss_pred             EEECCC
Confidence            655543

>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}

Probab=99.43  E-value=2.8e-13  Score=113.73  Aligned_cols=78  Identities=17%  Similarity=0.257  Sum_probs=63.6

Q ss_pred             CcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEeec
Q psy14559         11 TKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTPY   90 (405)
Q Consensus        11 ~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~~   90 (405)
                      .++|||+|||+++|+++|+++|+.||+|.+|++.. +  ..++.++|||||+|.+.++|+.|+.+++..+.++ .+.+.+
T Consensus        36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~-~--~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~-~l~V~~  111 (124)
T 2jwn_A           36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILC-D--KFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGR-TIKVLP  111 (124)
T ss_dssp             HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEE-E--CTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTE-ECEEEE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEe-c--CCCCCcccEEEEEECCHHHHHHHHhcCCCeECCe-EEEEEE
Confidence            58999999999999999999999999999999943 2  2467889999999999999999996555555444 444444


Q ss_pred             CC
Q psy14559         91 NS   92 (405)
Q Consensus        91 ~~   92 (405)
                      ..
T Consensus       112 a~  113 (124)
T 2jwn_A          112 KR  113 (124)
T ss_dssp             SS
T ss_pred             CC
Confidence            33

>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}

Probab=99.43  E-value=1e-13  Score=113.86  Aligned_cols=76  Identities=9%  Similarity=0.060  Sum_probs=63.1

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCc---eEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccce
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGK---VEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRA   84 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~---I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~   84 (405)
                      ....++|||+|||+++|+++|+++|+.||.   |.+|+| +.+.  . ++++|||||+|.+.++|+.|+.+++..+.++.
T Consensus         8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i-~~~~--~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~   83 (107)
T 2lmi_A            8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHF-LLNR--D-GKRRGDALIEMESEQDVQKALEKHRMYMGQRY   83 (107)
T ss_dssp             CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEEC-CCCT--T-STTCSEEEEEBSSHHHHHHHHTTTTCCSSSSC
T ss_pred             CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEE-EECC--C-CCEeeEEEEEECCHHHHHHHHHhCcceeCCeE
Confidence            567899999999999999999999999998   899999 4433  3 78999999999999999999995554444444


Q ss_pred             eEE
Q psy14559         85 LVV   87 (405)
Q Consensus        85 ~~v   87 (405)
                      +.+
T Consensus        84 i~V   86 (107)
T 2lmi_A           84 VEV   86 (107)
T ss_dssp             CCC
T ss_pred             EEE
Confidence            433

>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}

Probab=99.43  E-value=2.8e-13  Score=115.13  Aligned_cols=80  Identities=16%  Similarity=0.254  Sum_probs=63.5

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHH----HHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccc
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQ----TLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDR   83 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr----~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~   83 (405)
                      ..+.++|||+|||+.+|+++|+    ++|++||+|.+|.+ +.     +++++|||||+|.+.++|..|+..+|+..+.+
T Consensus        26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i-~~-----~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~g   99 (127)
T 2a3j_A           26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVV-DL-----SDDNSGKAYIVFATQESAQAFVEAFQGYPFQG   99 (127)
T ss_dssp             CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEE-CC-----CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTT
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEe-cc-----CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCC
Confidence            4567899999999999999876    69999999999988 21     36789999999999999999996555544444


Q ss_pred             eeEEeecCCC
Q psy14559         84 ALVVTPYNSG   93 (405)
Q Consensus        84 ~~~vv~~~~~   93 (405)
                      ..+.+.++..
T Consensus       100 r~l~V~~a~~  109 (127)
T 2a3j_A          100 NPLVITFSET  109 (127)
T ss_dssp             SCCEEEECCC
T ss_pred             CEEEEEEccC
Confidence            4555555543

>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}

Probab=99.43  E-value=3.5e-13  Score=117.87  Aligned_cols=82  Identities=16%  Similarity=0.267  Sum_probs=66.9

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      ....++|||+|||+++|+++|+++|+.||+|.+|++ +.  +..++.++|||||+|.+.++|+.|+..+|+..+++..+.
T Consensus        67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i-~~--~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~  143 (158)
T 2kn4_A           67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYI-PR--DRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELR  143 (158)
T ss_dssp             CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEC-CC--CSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-ee--cCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence            455799999999999999999999999999999999 43  334688999999999999999999976555555555555


Q ss_pred             eecCC
Q psy14559         88 TPYNS   92 (405)
Q Consensus        88 v~~~~   92 (405)
                      +.++.
T Consensus       144 v~~a~  148 (158)
T 2kn4_A          144 VQMAR  148 (158)
T ss_dssp             EEEEC
T ss_pred             EEECC
Confidence            55443

>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.43  E-value=4.3e-13  Score=106.72  Aligned_cols=75  Identities=12%  Similarity=0.150  Sum_probs=62.6

Q ss_pred             CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeE
Q psy14559          7 APVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALV   86 (405)
Q Consensus         7 ~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~   86 (405)
                      .....++|||+|||+++|+++|+++|+.||.|.+|++.           ++||||+|.+.++|..|+..+|...+++..+
T Consensus         6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~-----------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l   74 (92)
T 2dgt_A            6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-----------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRM   74 (92)
T ss_dssp             CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC-----------SSEEEEEESCHHHHHHHHHHHTTEEETTEEE
T ss_pred             CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE-----------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEE
Confidence            36678999999999999999999999999999999991           4599999999999999997655555555555


Q ss_pred             EeecCC
Q psy14559         87 VTPYNS   92 (405)
Q Consensus        87 vv~~~~   92 (405)
                      .+.+..
T Consensus        75 ~V~~a~   80 (92)
T 2dgt_A           75 HVQLST   80 (92)
T ss_dssp             EEEESS
T ss_pred             EEEEcc
Confidence            555544

>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.43  E-value=5e-13  Score=109.80  Aligned_cols=75  Identities=12%  Similarity=0.117  Sum_probs=62.0

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccc----
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDR----   83 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~----   83 (405)
                      ....++|||+|||+++|+++|+++|+.||+|.+|+| +.  +       |||||+|.+.++|+.|++.+|...+++    
T Consensus        12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i-~~--~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~   81 (108)
T 1x4c_A           12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADV-YR--D-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGE   81 (108)
T ss_dssp             CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEE-ET--T-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSC
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEE-ec--C-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCc
Confidence            445789999999999999999999999999999999 22  1       899999999999999998666655555    


Q ss_pred             -eeEEeecCC
Q psy14559         84 -ALVVTPYNS   92 (405)
Q Consensus        84 -~~~vv~~~~   92 (405)
                       ..+.+.++.
T Consensus        82 ~~~i~V~~a~   91 (108)
T 1x4c_A           82 TAYIRVKVDG   91 (108)
T ss_dssp             EEEEEEEESS
T ss_pred             ceEEEEEeCC
Confidence             555555444

>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.43  E-value=3.8e-13  Score=111.24  Aligned_cols=70  Identities=10%  Similarity=0.140  Sum_probs=60.3

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccc
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFI   81 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~   81 (405)
                      ..+.++|||+|||+++|+++|+++|+.||+|.+|++ +.+.   ++.++|||||+|.+.++|+.|+..+|...+
T Consensus        22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i-~~~~---~g~~~g~afV~f~~~~~a~~A~~~l~g~~~   91 (114)
T 1x5o_A           22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRI-LRDS---SGTSRGVGFARMESTEKCEAVIGHFNGKFI   91 (114)
T ss_dssp             CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEE-EECS---SSCEEEEEEEEESCHHHHHHHHHHHBTCCC
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-EECC---CCCcceEEEEEECCHHHHHHHHHHhCCCEE
Confidence            456799999999999999999999999999999999 4332   578899999999999999999975444444

>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}

Probab=99.42  E-value=4.1e-13  Score=106.69  Aligned_cols=62  Identities=21%  Similarity=0.252  Sum_probs=49.3

Q ss_pred             ccccCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHH
Q psy14559          3 VDTVAPVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGIS   72 (405)
Q Consensus         3 ~~~~~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~A   72 (405)
                      +.........+|||+|||+++|+++|+++|++||+|.+|++ +.       .++|||||+|.+.++|+.+
T Consensus         3 ~~~~~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i-~~-------~srGfaFV~F~~~~~A~~~   64 (89)
T 3d2w_A            3 GSHHHHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFI-PK-------PFRAFAFVTFADDKVAQSL   64 (89)
T ss_dssp             --------CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEC-CS-------SCCSEEEEEESCHHHHHHH
T ss_pred             ccCCCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEE-ee-------CCCCEEEEEECCHHHHHHH
Confidence            34455778899999999999999999999999999999999 32       2699999999999998843

>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.42  E-value=2.8e-13  Score=107.30  Aligned_cols=75  Identities=15%  Similarity=0.172  Sum_probs=62.2

Q ss_pred             CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeE
Q psy14559          7 APVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALV   86 (405)
Q Consensus         7 ~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~   86 (405)
                      .+.+.++|||+|||+++|+++|+++|+.||.|.+|++.           ++||||+|.+.++|+.|+..+|...+++..+
T Consensus         5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~-----------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l   73 (90)
T 2dnp_A            5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV-----------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRI   73 (90)
T ss_dssp             SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC-----------SSCEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred             CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE-----------CCEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence            36678999999999999999999999999999999991           4599999999999999998555555555555


Q ss_pred             EeecCC
Q psy14559         87 VTPYNS   92 (405)
Q Consensus        87 vv~~~~   92 (405)
                      .+.++.
T Consensus        74 ~v~~a~   79 (90)
T 2dnp_A           74 NVELST   79 (90)
T ss_dssp             EEEESC
T ss_pred             EEEECC
Confidence            555444

>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A

Probab=99.42  E-value=3.2e-13  Score=109.84  Aligned_cols=74  Identities=18%  Similarity=0.243  Sum_probs=62.6

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      ..+.++|||+|||+++|+++|+++|+.||+|.+|++ +          ++||||+|.+.++|+.|++.+|...+++..+.
T Consensus         8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~-~----------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~   76 (103)
T 2dgu_A            8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKK-L----------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIE   76 (103)
T ss_dssp             CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEE-C----------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-E----------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEE
Confidence            567799999999999999999999999999999998 1          56999999999999999986555555555666


Q ss_pred             eecCC
Q psy14559         88 TPYNS   92 (405)
Q Consensus        88 v~~~~   92 (405)
                      +.++.
T Consensus        77 v~~a~   81 (103)
T 2dgu_A           77 IVFAK   81 (103)
T ss_dssp             EEECC
T ss_pred             EEEcC
Confidence            65554

>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.42  E-value=7.4e-13  Score=106.78  Aligned_cols=75  Identities=15%  Similarity=0.229  Sum_probs=63.4

Q ss_pred             CCCCCcEEEEcCCCCCCCHHHHHHHhccC--CceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccce
Q psy14559          7 APVKTKVVQVANIAPQATRDQMQTLFGYL--GKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRA   84 (405)
Q Consensus         7 ~~~~~~tLfVgNLp~~vTeedLr~lFs~~--G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~   84 (405)
                      ...+.++|||+|||+++|+++|+++|+.|  |.|.+|++           .++||||+|.+.++|+.|+..+|...+++.
T Consensus        11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~-----------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~   79 (99)
T 2cpd_A           11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKK-----------IRDYAFVHFSNREDAVEAMKALNGKVLDGS   79 (99)
T ss_dssp             CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEE-----------CSSEEEEEESSHHHHHHHHHHHSSEEETTE
T ss_pred             ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE-----------eCCeEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence            35678999999999999999999999999  99999987           267999999999999999986665555566


Q ss_pred             eEEeecCC
Q psy14559         85 LVVTPYNS   92 (405)
Q Consensus        85 ~~vv~~~~   92 (405)
                      .+.+.++.
T Consensus        80 ~l~v~~a~   87 (99)
T 2cpd_A           80 PIEVTLAK   87 (99)
T ss_dssp             EEEEECCC
T ss_pred             EEEEEECC
Confidence            66666554

>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.41  E-value=2e-13  Score=112.97  Aligned_cols=75  Identities=12%  Similarity=0.142  Sum_probs=61.0

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      ....++|||+|||+.+|+++|+++|++||.|.+|.+ +        .+++||||+|.+.++|+.|++.+|...+++..+.
T Consensus         7 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i-~--------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~   77 (111)
T 1whx_A            7 GRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLL-P--------EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLY   77 (111)
T ss_dssp             SEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEC-C--------SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-e--------CCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEE
Confidence            345689999999999999999999999999999988 2        2578999999999999999975555444444445


Q ss_pred             eecC
Q psy14559         88 TPYN   91 (405)
Q Consensus        88 v~~~   91 (405)
                      +.++
T Consensus        78 V~~a   81 (111)
T 1whx_A           78 LEWA   81 (111)
T ss_dssp             EEEE
T ss_pred             EEEC
Confidence            5443

>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.41  E-value=5e-13  Score=108.10  Aligned_cols=78  Identities=13%  Similarity=0.157  Sum_probs=63.2

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      ..+.++|||+|||+++|+++|+++|+.||.|   ++ +.+   .+++++|||||+|.+.++|+.|+..+|...+++..+.
T Consensus        12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~-~~~---~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~   84 (101)
T 2fc9_A           12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KV-PQN---QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIR   84 (101)
T ss_dssp             SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---EC-CBC---SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EE-EEC---CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEE
Confidence            5678999999999999999999999999987   34 222   3578899999999999999999986665555555555


Q ss_pred             eecCC
Q psy14559         88 TPYNS   92 (405)
Q Consensus        88 v~~~~   92 (405)
                      +.+..
T Consensus        85 v~~a~   89 (101)
T 2fc9_A           85 LELQG   89 (101)
T ss_dssp             EEECS
T ss_pred             EEEcC
Confidence            55544

>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}

Probab=99.41  E-value=1.8e-13  Score=109.92  Aligned_cols=72  Identities=8%  Similarity=0.257  Sum_probs=59.6

Q ss_pred             CCCCCcEEEEcCCCC-CCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhc-cCCccccce
Q psy14559          7 APVKTKVVQVANIAP-QATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHL-TNTVFIDRA   84 (405)
Q Consensus         7 ~~~~~~tLfVgNLp~-~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~-~n~~~~~~~   84 (405)
                      ...+.++|||+|||+ ++|+++|+++|+.||+|.+|++           ++|||||+|.+.++|+.|+.. ++..+.++.
T Consensus         6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i-----------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~   74 (96)
T 2kvi_A            6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI-----------KNAFGFIQFDNPQSVRDAIECESQEMNFGKK   74 (96)
T ss_dssp             ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEE-----------ETTEEEEEESCHHHHHHHHHHHTCSSCBTTT
T ss_pred             cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE-----------eCCEEEEEECCHHHHHHHHHHcCCCeeCCcE
Confidence            366889999999998 9999999999999999999999           278999999999999999975 555555655


Q ss_pred             eEEee
Q psy14559         85 LVVTP   89 (405)
Q Consensus        85 ~~vv~   89 (405)
                      +.|..
T Consensus        75 l~V~~   79 (96)
T 2kvi_A           75 LILEV   79 (96)
T ss_dssp             BCEEE
T ss_pred             EEEEE
Confidence            55443

>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.41  E-value=4e-13  Score=110.36  Aligned_cols=77  Identities=18%  Similarity=0.281  Sum_probs=64.4

Q ss_pred             CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeE
Q psy14559          7 APVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALV   86 (405)
Q Consensus         7 ~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~   86 (405)
                      .....++|||+|||+++|+++|+++|+.||.|.+|++. .        .+|||||+|.+.++|..|+..++...+++..+
T Consensus        21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~-~--------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l   91 (109)
T 1x4g_A           21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF-P--------EKGYSFVRFSTHESAAHAIVSVNGTTIEGHVV   91 (109)
T ss_dssp             SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEE-T--------TTTEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred             CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEe-C--------CCCEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence            35678999999999999999999999999999999992 2        27999999999999999997655555656666


Q ss_pred             EeecCC
Q psy14559         87 VTPYNS   92 (405)
Q Consensus        87 vv~~~~   92 (405)
                      .+.++.
T Consensus        92 ~v~~a~   97 (109)
T 1x4g_A           92 KCYWGK   97 (109)
T ss_dssp             EEECCC
T ss_pred             EEEecC
Confidence            666554

>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A

Probab=99.41  E-value=5.5e-13  Score=117.92  Aligned_cols=82  Identities=17%  Similarity=0.181  Sum_probs=66.2

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      ..+.++|||+|||+.+|+++|+++|+.||+|.+|.|..   +..++.++|||||+|.+.++|+.|+..+|+..+++..+.
T Consensus        69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~---~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~  145 (165)
T 1rk8_A           69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNL---DRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ  145 (165)
T ss_dssp             CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE---CTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEe---cCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence            34567899999999999999999999999999999943   234688999999999999999999976555555555555


Q ss_pred             eecCC
Q psy14559         88 TPYNS   92 (405)
Q Consensus        88 v~~~~   92 (405)
                      +.++.
T Consensus       146 V~~a~  150 (165)
T 1rk8_A          146 VDWCF  150 (165)
T ss_dssp             EEESE
T ss_pred             EEEec
Confidence            55543

>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C

Probab=99.41  E-value=4.2e-13  Score=125.31  Aligned_cols=80  Identities=11%  Similarity=0.067  Sum_probs=64.8

Q ss_pred             CCcEEEEcCCCCCCCHHHHHHHhccCC--ceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559         10 KTKVVQVANIAPQATRDQMQTLFGYLG--KVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus        10 ~~~tLfVgNLp~~vTeedLr~lFs~~G--~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      ..++|||+|||+++|+++|+++|+.||  +|.+|+|. .  +..+++++|||||+|.+.++|+.|+..+|...+++..+.
T Consensus        67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~-~--d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~  143 (229)
T 3q2s_C           67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFF-E--NRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPV  143 (229)
T ss_dssp             --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEE-E--CTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCE
T ss_pred             CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEE-e--cCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeE
Confidence            567899999999999999999999999  99999994 3  335788999999999999999999986665555544555


Q ss_pred             eecCC
Q psy14559         88 TPYNS   92 (405)
Q Consensus        88 v~~~~   92 (405)
                      |.++.
T Consensus       144 V~~a~  148 (229)
T 3q2s_C          144 VTPVN  148 (229)
T ss_dssp             EEECC
T ss_pred             EEECC
Confidence            54443

>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.41  E-value=3.5e-13  Score=111.83  Aligned_cols=68  Identities=16%  Similarity=0.250  Sum_probs=56.6

Q ss_pred             CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCC-CCCccccEEEEEecchhhHHHHHhcc
Q psy14559          7 APVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDV-SIPVQSRICYVKFFDEKCVGISQHLT   76 (405)
Q Consensus         7 ~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~-~~~~~~g~aFV~F~~~e~A~~Al~~~   76 (405)
                      +....++|||+|||+++|+++|+++|++||+|. +.+ +.+... .+++++|||||+|.+.++|+.|+..+
T Consensus         4 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~-~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~   72 (114)
T 2dnl_A            4 GSSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDW-PHKAESKSYFPPKGYAFLLFQEESSVQALIDAC   72 (114)
T ss_dssp             SSSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EEC-TTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS
T ss_pred             CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEE-eecCCCCCCCCcccEEEEEECCHHHHHHHHHhh
Confidence            356789999999999999999999999999999 766 332211 12688999999999999999999755

>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A

Probab=99.41  E-value=4.7e-13  Score=104.96  Aligned_cols=71  Identities=15%  Similarity=0.245  Sum_probs=59.4

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccC----C-------ceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhcc
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYL----G-------KVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLT   76 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~----G-------~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~   76 (405)
                      ..+.++|||+|||+++|+++|+++|+.|    |       +|.++++ .        +++|||||+|.+.++|+.|+.++
T Consensus         3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~-~--------~~kg~afV~f~~~~~a~~A~~l~   73 (87)
T 2hzc_A            3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-N--------QDKNFAFLEFRSVDETTQAMAFD   73 (87)
T ss_dssp             SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEE-C--------SSSSEEEEEESSHHHHHHHGGGT
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEe-c--------CCCcEEEEEcCCHHHHHHHHhcC
Confidence            4568999999999999999999999999    8       9999998 2        23899999999999999999555


Q ss_pred             CCccccceeEE
Q psy14559         77 NTVFIDRALVV   87 (405)
Q Consensus        77 n~~~~~~~~~v   87 (405)
                      +..+.++.+.+
T Consensus        74 g~~~~g~~l~V   84 (87)
T 2hzc_A           74 GIIFQGQSLKI   84 (87)
T ss_dssp             TCEETTEECEE
T ss_pred             CCEECCeEEEE
Confidence            55555555443

>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...

Probab=99.41  E-value=2.8e-13  Score=108.55  Aligned_cols=81  Identities=10%  Similarity=0.153  Sum_probs=65.2

Q ss_pred             CCCCCcEEEEcCCCCCCCHHHHH----HHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCcccc
Q psy14559          7 APVKTKVVQVANIAPQATRDQMQ----TLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFID   82 (405)
Q Consensus         7 ~~~~~~tLfVgNLp~~vTeedLr----~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~   82 (405)
                      +..+.++|||+|||+++|+++|+    ++|+.||.|.+|++. .     ++.++|||||+|.+.++|..|+..+|+..++
T Consensus         4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~-~-----~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~   77 (97)
T 1nu4_A            4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVS-R-----SLKMRGQAFVIFKEVSSATNALRSMQGFPFY   77 (97)
T ss_dssp             --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECC-H-----HHHHTTCEEEEESSHHHHHHHHHHHTTCEET
T ss_pred             CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEE-c-----CCCcCcEEEEEeCCHHHHHHHHHHhCCCEEC
Confidence            35678999999999999999999    999999999999983 1     3567999999999999999999765555555


Q ss_pred             ceeEEeecCCC
Q psy14559         83 RALVVTPYNSG   93 (405)
Q Consensus        83 ~~~~vv~~~~~   93 (405)
                      +..+.+.++..
T Consensus        78 g~~l~v~~a~~   88 (97)
T 1nu4_A           78 DKPMRIQYAKT   88 (97)
T ss_dssp             TEECEEEECSS
T ss_pred             CcEEEEEEccC
Confidence            55555555543

>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.40  E-value=1.6e-13  Score=114.01  Aligned_cols=75  Identities=9%  Similarity=0.128  Sum_probs=59.9

Q ss_pred             CCCCcEEEEcCCCCC-CCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhcc--CCccccce
Q psy14559          8 PVKTKVVQVANIAPQ-ATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLT--NTVFIDRA   84 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~-vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~--n~~~~~~~   84 (405)
                      ..+.++|||+|||++ +|+++|+++|++||+|.+|++.         +++|||||+|.+.++|+.|+..+  +...++++
T Consensus        22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~---------~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr   92 (112)
T 1x4f_A           22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILM---------RMKSQAFIEMETREDAMAMVDHCLKKALWFQGR   92 (112)
T ss_dssp             SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEE---------TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSS
T ss_pred             CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEe---------cCCCEEEEEECCHHHHHHHHHHhccCCceECCE
Confidence            456899999999998 9999999999999999999992         24899999999999999999743  23334444


Q ss_pred             eEEeecC
Q psy14559         85 LVVTPYN   91 (405)
Q Consensus        85 ~~vv~~~   91 (405)
                      .+.+.++
T Consensus        93 ~l~V~~a   99 (112)
T 1x4f_A           93 CVKVDLS   99 (112)
T ss_dssp             CCEEEEE
T ss_pred             EEEEEEC
Confidence            4444433

>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A

Probab=99.40  E-value=5.4e-13  Score=109.89  Aligned_cols=75  Identities=9%  Similarity=0.251  Sum_probs=63.0

Q ss_pred             CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeE
Q psy14559          7 APVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALV   86 (405)
Q Consensus         7 ~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~   86 (405)
                      +....++|||+|||+++|+++|+++|+.||.|.+|++.           +|||||+|.+.++|+.|+..+|+..+++..+
T Consensus        27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-----------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l   95 (108)
T 2jvo_A           27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-----------NGFAFVEFEEAESAAKAIEEVHGKSFANQPL   95 (108)
T ss_dssp             -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-----------TTEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred             CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-----------CCEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence            35678999999999999999999999999999999992           7899999999999999997655555555555


Q ss_pred             EeecCC
Q psy14559         87 VTPYNS   92 (405)
Q Consensus        87 vv~~~~   92 (405)
                      .+.+..
T Consensus        96 ~V~~a~  101 (108)
T 2jvo_A           96 EVVYSK  101 (108)
T ss_dssp             EEESCS
T ss_pred             EEEEec
Confidence            555544

>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A

Probab=99.40  E-value=2.3e-13  Score=116.70  Aligned_cols=82  Identities=16%  Similarity=0.267  Sum_probs=66.6

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      ..+.++|||+|||+++|+++|+++|+.||+|.+|++ +.  +..+++++|||||+|.+.++|+.|+..+|...+++..+.
T Consensus        44 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i-~~--~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~  120 (135)
T 2lea_A           44 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYI-PR--DRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELR  120 (135)
T ss_dssp             GGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEEC-CC--CSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-Ee--cCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence            345689999999999999999999999999999999 33  334678999999999999999999976555555555555


Q ss_pred             eecCC
Q psy14559         88 TPYNS   92 (405)
Q Consensus        88 v~~~~   92 (405)
                      +.+..
T Consensus       121 V~~a~  125 (135)
T 2lea_A          121 VQMAR  125 (135)
T ss_dssp             EEECC
T ss_pred             EEECC
Confidence            55544

>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.40  E-value=3e-13  Score=108.82  Aligned_cols=77  Identities=16%  Similarity=0.148  Sum_probs=61.0

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      ....++|||+|||+++|+++|+++|+.||.|. +++..       +.++|||||+|.+.++|+.|+..+|...+++..+.
T Consensus        16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~-------~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~   87 (97)
T 2e5j_A           16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW-------QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLR   87 (97)
T ss_dssp             SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE-------ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred             CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc-------CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence            34479999999999999999999999999997 66622       35699999999999999999976555555545455


Q ss_pred             eecCC
Q psy14559         88 TPYNS   92 (405)
Q Consensus        88 v~~~~   92 (405)
                      +.++.
T Consensus        88 V~~a~   92 (97)
T 2e5j_A           88 VALAR   92 (97)
T ss_dssp             EEECC
T ss_pred             EEEcC
Confidence            54443

>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1

Probab=99.39  E-value=5.8e-13  Score=106.61  Aligned_cols=77  Identities=16%  Similarity=0.137  Sum_probs=63.4

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      ..+.++|||+|||+++|+++|+++|+.||.|..+ -       .++.++|||||+|.+.++|..|+..++...+++..+.
T Consensus        13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-~-------~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~   84 (96)
T 1fjc_A           13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-S-------QDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVS   84 (96)
T ss_dssp             TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-E-------ETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-C-------CCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence            4567999999999999999999999999998776 1       1467899999999999999999986666655555555


Q ss_pred             eecCC
Q psy14559         88 TPYNS   92 (405)
Q Consensus        88 v~~~~   92 (405)
                      +.+..
T Consensus        85 v~~a~   89 (96)
T 1fjc_A           85 LYYTG   89 (96)
T ss_dssp             EEECS
T ss_pred             EEEcC
Confidence            55543

>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1

Probab=99.39  E-value=1.2e-13  Score=111.89  Aligned_cols=81  Identities=11%  Similarity=0.096  Sum_probs=63.4

Q ss_pred             CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeE
Q psy14559          7 APVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALV   86 (405)
Q Consensus         7 ~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~   86 (405)
                      .....++|||+|||+++|+++|+++|+.||.|.+ .+ ..  +..+++++|||||+|.+.++|+.|+. +|...+++..+
T Consensus        13 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~-~~--~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l   87 (101)
T 1fj7_A           13 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LA-VV--DVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEI   87 (101)
T ss_dssp             TCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CC-CC--EEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCC
T ss_pred             cCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EE-Ee--cCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEE
Confidence            3557899999999999999999999999999988 33 22  22357789999999999999999999 55444444444


Q ss_pred             EeecCC
Q psy14559         87 VTPYNS   92 (405)
Q Consensus        87 vv~~~~   92 (405)
                      .+.++.
T Consensus        88 ~V~~a~   93 (101)
T 1fj7_A           88 KLEKPK   93 (101)
T ss_dssp             EEECCS
T ss_pred             EEEEcC
Confidence            454443

>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A

Probab=99.39  E-value=2e-13  Score=117.82  Aligned_cols=77  Identities=12%  Similarity=0.089  Sum_probs=62.0

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      +...++|||+|||+++|+++|+++|+.|| |.+|+| +.++   .++++|||||+|.+.++|+.|+.+++..+.++.+.|
T Consensus        43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i-~~d~---~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V  117 (139)
T 2hgn_A           43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHI-EIGP---DGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIEL  117 (139)
T ss_dssp             --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEEC-CCSS---SSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCC
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEE-EECC---CCCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEE
Confidence            34568999999999999999999999999 779988 4433   378999999999999999999976555555555444


Q ss_pred             ee
Q psy14559         88 TP   89 (405)
Q Consensus        88 v~   89 (405)
                      ..
T Consensus       118 ~~  119 (139)
T 2hgn_A          118 FL  119 (139)
T ss_dssp             EE
T ss_pred             EE
Confidence            33

>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.39  E-value=1.7e-12  Score=103.68  Aligned_cols=74  Identities=14%  Similarity=0.072  Sum_probs=58.6

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      ....++|||+|||+++|+++|+++|+.||+|.+|.+     +..+++   ||||+|.+.++|+.|+. +|...+++..+.
T Consensus         5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~-----~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~   75 (94)
T 2e5g_A            5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVM-----DKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLR   75 (94)
T ss_dssp             CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEE-----CSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECC
T ss_pred             cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEE-----cCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEE
Confidence            456789999999999999999999999999999833     222232   99999999999999999 555555555444


Q ss_pred             eec
Q psy14559         88 TPY   90 (405)
Q Consensus        88 v~~   90 (405)
                      +.+
T Consensus        76 V~~   78 (94)
T 2e5g_A           76 VRP   78 (94)
T ss_dssp             CBC
T ss_pred             EEE
Confidence            443

>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.38  E-value=3.3e-13  Score=107.47  Aligned_cols=77  Identities=17%  Similarity=0.245  Sum_probs=62.5

Q ss_pred             cCCCCCcEEEEcCCCCCCCHHHHHHHhccCCc-eEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCC-ccccc
Q psy14559          6 VAPVKTKVVQVANIAPQATRDQMQTLFGYLGK-VEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNT-VFIDR   83 (405)
Q Consensus         6 ~~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~-I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~-~~~~~   83 (405)
                      .+....++|||+|||+++|+++|+++|+.||. |..+.+ .         ++|||||+|.+.++|+.|++.+|. ..+++
T Consensus         3 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~-~---------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g   72 (93)
T 2cqh_A            3 SGSSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL-L---------KSGYAFVDYPDQNWAIRAIETLSGKVELHG   72 (93)
T ss_dssp             CCCCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE-E---------ETTEEEECCSCHHHHHHHHHHHTTTCEETT
T ss_pred             CCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE-c---------CCCEEEEEECCHHHHHHHHHHccCCeeECC
Confidence            34667899999999999999999999999999 676666 1         489999999999999999975555 55555


Q ss_pred             eeEEeecCC
Q psy14559         84 ALVVTPYNS   92 (405)
Q Consensus        84 ~~~vv~~~~   92 (405)
                      ..+.+.++.
T Consensus        73 ~~l~v~~a~   81 (93)
T 2cqh_A           73 KIMEVDYSV   81 (93)
T ss_dssp             EECEEEECC
T ss_pred             EEEEEEEcc
Confidence            555555544

>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A

Probab=99.38  E-value=6.5e-13  Score=124.58  Aligned_cols=73  Identities=21%  Similarity=0.341  Sum_probs=68.2

Q ss_pred             CcEEEEeCCCCCC---------CHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCcee-----
Q psy14559        166 RRTLVAINIEESV---------SPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNL-----  230 (405)
Q Consensus       166 ~rtvfV~NLp~~~---------tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l-----  230 (405)
                      .+|||||||+..+         ++++|+++|++||+|.+|+++.    ++|||||+|.+.++|+.|+. |+|..|     
T Consensus       134 ~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~----~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~  209 (240)
T 3u1l_A          134 NKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE----SKNCGFVKFKYQANAEFAKEAMSNQTLLLPSD  209 (240)
T ss_dssp             CCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG----GGTEEEEEESSHHHHHHHHHHHTTCCCCCTTS
T ss_pred             CceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC----CCCEEEEEeCCHHHHHHHHHHhCCCEEecccc
Confidence            7899999999998         7999999999999999999964    58999999999999999998 999999     


Q ss_pred             -------CCeeEEEeeccC
Q psy14559        231 -------KGKTLQMFHSTQ  242 (405)
Q Consensus       231 -------~g~~i~V~~a~~  242 (405)
                             .|+.|.|.+++.
T Consensus       210 ~e~~~~~~gr~L~V~wA~~  228 (240)
T 3u1l_A          210 KEWDDRREGTGLLVKWANE  228 (240)
T ss_dssp             TTGGGGGGSCCCEEEECC-
T ss_pred             ccccccCCCCEEEEEEccC
Confidence                   899999999974

>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A

Probab=99.37  E-value=6.4e-13  Score=104.96  Aligned_cols=75  Identities=7%  Similarity=0.118  Sum_probs=62.9

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      +...++|||+|||+++|+++|+++|++| +|.++++ .        +++|||||+|.+.++|+.|+..+|...+++..+.
T Consensus         2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i-~--------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~   71 (88)
T 1wg1_A            2 SSGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYV-D--------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLI   71 (88)
T ss_dssp             CCCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEE-E--------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEE-e--------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEE
Confidence            4567999999999999999999999999 9999998 2        4689999999999999999986666555555555


Q ss_pred             eecCC
Q psy14559         88 TPYNS   92 (405)
Q Consensus        88 v~~~~   92 (405)
                      +.+..
T Consensus        72 V~~a~   76 (88)
T 1wg1_A           72 VQLQP   76 (88)
T ss_dssp             EEECC
T ss_pred             EEEcC
Confidence            55443

>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.37  E-value=7.1e-13  Score=109.68  Aligned_cols=78  Identities=17%  Similarity=0.282  Sum_probs=62.5

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCce----EEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccc
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKV----EDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDR   83 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I----~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~   83 (405)
                      ..+.++|||+|||+++|+++|+++|+.||.|    ..+++.       +++++|||||+|.+.++|+.|+..+|...+++
T Consensus        22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~-------~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g   94 (115)
T 2cpx_A           22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM-------TGRMRGQAFITFPNKEIAWQALHLVNGYKLYG   94 (115)
T ss_dssp             CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE-------CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSS
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC-------CCccceEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence            4567999999999999999999999999999    455551       46789999999999999999997655554555


Q ss_pred             eeEEeecCC
Q psy14559         84 ALVVTPYNS   92 (405)
Q Consensus        84 ~~~vv~~~~   92 (405)
                      ..+.+.++.
T Consensus        95 ~~l~v~~a~  103 (115)
T 2cpx_A           95 KILVIEFGK  103 (115)
T ss_dssp             CBCEEEECC
T ss_pred             cEEEEEEcc
Confidence            555555544

>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.36  E-value=2.8e-12  Score=103.04  Aligned_cols=74  Identities=14%  Similarity=0.167  Sum_probs=62.6

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      ..+.++|||+||  ++|+++|+++|+.||+|.+|++ .        .++|||||+|.+.++|+.|+..+|...+++..+.
T Consensus        12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i-~--------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~   80 (97)
T 1x5p_A           12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSM-D--------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLK   80 (97)
T ss_dssp             CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEE-E--------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEE
T ss_pred             CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEe-c--------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence            557799999996  9999999999999999999999 2        3589999999999999999976666666666666


Q ss_pred             eecCC
Q psy14559         88 TPYNS   92 (405)
Q Consensus        88 v~~~~   92 (405)
                      +.++.
T Consensus        81 v~~a~   85 (97)
T 1x5p_A           81 VNIAR   85 (97)
T ss_dssp             EECCS
T ss_pred             EEECC
Confidence            66654

>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.36  E-value=1e-12  Score=103.62  Aligned_cols=75  Identities=19%  Similarity=0.224  Sum_probs=58.6

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      ..++++|||+|||+++|+++|+++|+.||+|.+|++ +.       .++|||||+|.+.++|+.|...  ...+++..+.
T Consensus         2 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i-~~-------~~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~   71 (88)
T 1wf0_A            2 SSGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFI-PK-------PFRAFAFVTFADDQIAQSLCGE--DLIIKGISVH   71 (88)
T ss_dssp             CSCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEEC-CS-------SCCSCCEEECSCHHHHHHTTTC--EEEETTEEEE
T ss_pred             CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEE-ec-------CCCCEEEEEECCHHHHHHHhcC--CceeCCEEEE
Confidence            456799999999999999999999999999999999 22       2589999999999999865432  2333444444


Q ss_pred             eecCC
Q psy14559         88 TPYNS   92 (405)
Q Consensus        88 v~~~~   92 (405)
                      +.+..
T Consensus        72 v~~a~   76 (88)
T 1wf0_A           72 ISNAE   76 (88)
T ss_dssp             EECCC
T ss_pred             EEecC
Confidence            54433

>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}

Probab=99.36  E-value=1e-12  Score=117.89  Aligned_cols=81  Identities=12%  Similarity=0.027  Sum_probs=66.2

Q ss_pred             CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeE
Q psy14559          7 APVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALV   86 (405)
Q Consensus         7 ~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~   86 (405)
                      +..+.++|||+|||+.+|+++|+++|+.||+|.+|.| ..+  . ++.++|||||+|.+.++|+.|+..+|...+++..+
T Consensus        84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i-~~d--~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l  159 (177)
T 2f3j_A           84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAV-DYD--R-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPM  159 (177)
T ss_dssp             SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEE-CCC--T-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBC
T ss_pred             CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-EEC--C-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEE
Confidence            3556799999999999999999999999999999999 433  2 57889999999999999999998555555555555


Q ss_pred             EeecC
Q psy14559         87 VTPYN   91 (405)
Q Consensus        87 vv~~~   91 (405)
                      .+.++
T Consensus       160 ~V~~a  164 (177)
T 2f3j_A          160 DIQLV  164 (177)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            55443

>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A

Probab=99.36  E-value=1.1e-12  Score=107.83  Aligned_cols=73  Identities=12%  Similarity=0.214  Sum_probs=60.2

Q ss_pred             CCCcEEEEcCCCCC-CCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559          9 VKTKVVQVANIAPQ-ATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus         9 ~~~~tLfVgNLp~~-vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      ...++|||+|||++ +|+++|+++|+.||+|.+|++           ++|||||+|.+.++|+.|+..++...+++..+.
T Consensus        25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-----------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~   93 (110)
T 1wf1_A           25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-----------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLD   93 (110)
T ss_dssp             TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-----------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECC
T ss_pred             CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-----------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence            34589999999999 999999999999999999988           379999999999999999965555545455555


Q ss_pred             eecCC
Q psy14559         88 TPYNS   92 (405)
Q Consensus        88 v~~~~   92 (405)
                      +.+..
T Consensus        94 V~~a~   98 (110)
T 1wf1_A           94 INMAG   98 (110)
T ss_dssp             EEESC
T ss_pred             EEECC
Confidence            55443

>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.36  E-value=4.2e-12  Score=105.04  Aligned_cols=75  Identities=16%  Similarity=0.216  Sum_probs=65.6

Q ss_pred             CcEEEEeCCCCCCC-----------HHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCe
Q psy14559        166 RRTLVAINIEESVS-----------PQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGK  233 (405)
Q Consensus       166 ~rtvfV~NLp~~~t-----------ee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~  233 (405)
                      .++|+|.||....+           +++|+++|++||.|.+|.+..  ..++|||||+|.+.++|.+|+. |||..|.|+
T Consensus        15 s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~--~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr   92 (112)
T 2dit_A           15 ERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFD--RHPDGVASVSFRDPEEADYCIQTLDGRWFGGR   92 (112)
T ss_dssp             CCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEET--TCTTCEEEEECSCHHHHHHHHHHSTTCEETTE
T ss_pred             ceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEec--CCCCEEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence            78999999954432           589999999999999997643  2479999999999999999998 999999999


Q ss_pred             eEEEeeccC
Q psy14559        234 TLQMFHSTQ  242 (405)
Q Consensus       234 ~i~V~~a~~  242 (405)
                      +|+|.++..
T Consensus        93 ~l~v~~a~~  101 (112)
T 2dit_A           93 QITAQAWDG  101 (112)
T ss_dssp             ECEEEECCS
T ss_pred             EEEEEEeCC
Confidence            999999864

>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.35  E-value=8.4e-13  Score=109.92  Aligned_cols=63  Identities=14%  Similarity=0.204  Sum_probs=54.9

Q ss_pred             CCCCcEEEE--cCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCc
Q psy14559          8 PVKTKVVQV--ANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTV   79 (405)
Q Consensus         8 ~~~~~tLfV--gNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~   79 (405)
                      ..++++|||  +||++++|+++|+++|++||+|.+|.+ +.        .+|||||+|.+.++|+.|+..+|+.
T Consensus        22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i-~~--------~rgfaFV~f~~~~~A~~Ai~~lnG~   86 (114)
T 2cq2_A           22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLM-PP--------NKPYSFARYRTTEESKRAYVTLNGK   86 (114)
T ss_dssp             SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEEC-CT--------TCSCEEEEESSHHHHHHHHHHTTTC
T ss_pred             CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEE-eC--------CCCEEEEEECCHHHHHHHHHHhCCC
Confidence            456889999  779999999999999999999999988 21        3799999999999999999755544

>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A

Probab=99.35  E-value=1.4e-12  Score=113.33  Aligned_cols=76  Identities=14%  Similarity=0.199  Sum_probs=61.5

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      ....++|||+|||+++|+++|+++|+.||+|.+|++ +.+       ++|||||+|.+.++|..|+..+|...+++..+.
T Consensus        70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i-~~~-------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~  141 (150)
T 2i2y_A           70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWV-ARN-------PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVR  141 (150)
T ss_dssp             STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEE-CSS-------SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEE-eeC-------CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence            556799999999999999999999999999999999 321       589999999999999999975444444444444


Q ss_pred             eecC
Q psy14559         88 TPYN   91 (405)
Q Consensus        88 v~~~   91 (405)
                      +.+.
T Consensus       142 v~~a  145 (150)
T 2i2y_A          142 VELS  145 (150)
T ss_dssp             EEEC
T ss_pred             EEEc
Confidence            4443

>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A

Probab=99.35  E-value=2.4e-12  Score=116.99  Aligned_cols=75  Identities=12%  Similarity=0.131  Sum_probs=65.0

Q ss_pred             CcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEee
Q psy14559         11 TKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTP   89 (405)
Q Consensus        11 ~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~   89 (405)
                      .++|||+|||+++|+++|+++|+.||+|.+|++ +.+.   ++.++|||||+|.+.++|+.|+..++..+.++.+.|..
T Consensus       109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i-~~~~---~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~  183 (193)
T 2voo_A          109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQM-RRTL---HKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILF  183 (193)
T ss_dssp             HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEE-EECT---TCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEE
T ss_pred             cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEE-EECC---CCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEE
Confidence            489999999999999999999999999999999 4433   37789999999999999999999888766666665544

>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A

Probab=99.33  E-value=2.7e-12  Score=113.33  Aligned_cols=78  Identities=12%  Similarity=0.125  Sum_probs=61.8

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccc-c-cee
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFI-D-RAL   85 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~-~-~~~   85 (405)
                      +....+|||+||++.+|+++|+++|++||+|.+|+++.+       .+++||||+|.+.++|+.|+..+|+..+ + +..
T Consensus        43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k-------~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~  115 (164)
T 1sjr_A           43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-------NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCT  115 (164)
T ss_dssp             CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES-------SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSC
T ss_pred             CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-------CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcE
Confidence            445677999999999999999999999999999999421       2478999999999999999975555444 3 244


Q ss_pred             EEeecCC
Q psy14559         86 VVTPYNS   92 (405)
Q Consensus        86 ~vv~~~~   92 (405)
                      +.+.+..
T Consensus       116 L~V~~Ak  122 (164)
T 1sjr_A          116 LRIDFSK  122 (164)
T ss_dssp             EEEEECS
T ss_pred             EEEEEec
Confidence            5555544

>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3

Probab=99.33  E-value=5.2e-13  Score=109.41  Aligned_cols=70  Identities=21%  Similarity=0.314  Sum_probs=62.6

Q ss_pred             EeCCCCCCCHHHHHHHH------------hcCCCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEE
Q psy14559        171 AINIEESVSPQELVDFF------------QKVGTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQ  236 (405)
Q Consensus       171 V~NLp~~~tee~L~~~F------------~~~G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~  236 (405)
                      +.|||+.+++++|++.|            ++||.|.+|.++.+ .+.++|||||+|.+.++|.+|+. |||..+.||+|+
T Consensus        20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~   99 (104)
T 1jmt_A           20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH   99 (104)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred             cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence            66888888888887777            99999999999766 56789999999999999999998 999999999999


Q ss_pred             Eeec
Q psy14559        237 MFHS  240 (405)
Q Consensus       237 V~~a  240 (405)
                      |.++
T Consensus       100 v~~s  103 (104)
T 1jmt_A          100 AELS  103 (104)
T ss_dssp             EEEC
T ss_pred             EEEc
Confidence            9875

>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}

Probab=99.01  E-value=1.2e-13  Score=114.76  Aligned_cols=82  Identities=11%  Similarity=0.123  Sum_probs=66.6

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEE--------EEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCc
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVED--------LRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTV   79 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~--------v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~   79 (405)
                      ..+.++|||+|||+++|+++|+++|+.||.|.+        |++ +.  +..+++++|||||+|.+.++|+.|+..+|..
T Consensus         4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i-~~--~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~   80 (116)
T 2lcw_A            4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINL-YT--DRETGKLKGEATVSFDDPPSAKAAIDWFDGK   80 (116)
Confidence            457899999999999999999999999999999        777 33  2245788999999999999999999865555


Q ss_pred             cccceeEEeecCC
Q psy14559         80 FIDRALVVTPYNS   92 (405)
Q Consensus        80 ~~~~~~~vv~~~~   92 (405)
                      .+++..+.+.++.
T Consensus        81 ~~~g~~l~V~~a~   93 (116)
T 2lcw_A           81 EFSGNPIKVSFAT   93 (116)
Confidence            5555555555443

>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.33  E-value=2.5e-12  Score=102.91  Aligned_cols=78  Identities=14%  Similarity=0.224  Sum_probs=60.2

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEE-EeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLR-LYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALV   86 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~-i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~   86 (405)
                      ....++|||+|||+++|+++|+++|+.||.|.+|+ + +.++      ..+.|||+|.+.++|+.|+..+|...+++..+
T Consensus        12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i-~~~~------~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l   84 (96)
T 2e44_A           12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQV-NTDS------ETAVVNVTYSSKDQARQALDKLNGFQLENFTL   84 (96)
T ss_dssp             CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEE-CCSS------SSEEEEEEESSHHHHHHHHHHHTTCBCSSCBC
T ss_pred             CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEe-ecCC------CCCEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence            34579999999999999999999999999999995 6 4332      23349999999999999997555544444444


Q ss_pred             EeecCC
Q psy14559         87 VTPYNS   92 (405)
Q Consensus        87 vv~~~~   92 (405)
                      .+.++.
T Consensus        85 ~V~~a~   90 (96)
T 2e44_A           85 KVAYIP   90 (96)
T ss_dssp             EEEECC
T ss_pred             EEEEcC
Confidence            554443

>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}

Probab=99.32  E-value=3.1e-13  Score=116.47  Aligned_cols=80  Identities=14%  Similarity=0.143  Sum_probs=64.1

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEE--------EEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCc
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDL--------RLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTV   79 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v--------~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~   79 (405)
                      ..++++|||+|||+++|+++|+++|+.||.|.++        ++ .     .+++++|||||+|.+.++|..|+..+|+.
T Consensus        42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~-~-----~~g~~~g~afV~f~~~~~A~~Ai~~lng~  115 (143)
T 3egn_A           42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRL-M-----KEGRMKGQAFIGLPNEKAAAKALKEANGY  115 (143)
T ss_dssp             CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEE-E-----EETTTEEEEEEECSSHHHHHHHHHHHTTB
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEe-c-----cCCCcccEEEEEeCCHHHHHHHHHHhCCC
Confidence            4567899999999999999999999999998774        33 1     24678999999999999999999865555


Q ss_pred             cccceeEEeecCCC
Q psy14559         80 FIDRALVVTPYNSG   93 (405)
Q Consensus        80 ~~~~~~~vv~~~~~   93 (405)
                      .+++..+.+.++..
T Consensus       116 ~~~g~~l~V~~a~~  129 (143)
T 3egn_A          116 VLFGKPMVVQFARS  129 (143)
T ss_dssp             EETTEECEEEECCC
T ss_pred             EeCCcEEEEEECCC
Confidence            55555555555543

>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=4.7e-12  Score=102.42  Aligned_cols=79  Identities=15%  Similarity=0.161  Sum_probs=62.0

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      ..+.++|||+|||+++|+++|+++|+.|+   +|+++.   +..++.++|||||+|.+.++|+.|+..+|...+++..+.
T Consensus        12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~---~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~   85 (102)
T 2fc8_A           12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVT---DRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVT   85 (102)
T ss_dssp             SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEE---CSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred             CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEe---cCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence            56779999999999999999999999885   455522   224578899999999999999999986555555555555


Q ss_pred             eecCC
Q psy14559         88 TPYNS   92 (405)
Q Consensus        88 v~~~~   92 (405)
                      +.++.
T Consensus        86 V~~a~   90 (102)
T 2fc8_A           86 LDWAK   90 (102)
T ss_dssp             EEECC
T ss_pred             EEEec
Confidence            55544

>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A

Probab=99.31  E-value=5.8e-12  Score=103.33  Aligned_cols=76  Identities=18%  Similarity=0.188  Sum_probs=66.1

Q ss_pred             CcEEEEeCC--CCCCC--------HHHHHHHHhcCCCeeEEEEeccC----CCCCcEEEEEECCHHHHHHHHH-hCCcee
Q psy14559        166 RRTLVAINI--EESVS--------PQELVDFFQKVGTVNYIRFCTRE----NDTNKYALVEFSDQACVIPALK-LNGTNL  230 (405)
Q Consensus       166 ~rtvfV~NL--p~~~t--------ee~L~~~F~~~G~I~~i~i~~~~----~~~rg~afV~F~~~e~A~~Al~-lng~~l  230 (405)
                      .+.|.+.|+  |.+..        +++|++.|++||.|.+|.|+.+.    +.++|||||+|.+.++|.+|+. |||..+
T Consensus         5 s~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f   84 (105)
T 3v4m_A            5 TEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKF   84 (105)
T ss_dssp             CSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred             CeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEe
Confidence            678999998  43443        36899999999999999997652    3579999999999999999998 999999


Q ss_pred             CCeeEEEeecc
Q psy14559        231 KGKTLQMFHST  241 (405)
Q Consensus       231 ~g~~i~V~~a~  241 (405)
                      .||+|+|.++.
T Consensus        85 ~GR~i~v~~~~   95 (105)
T 3v4m_A           85 ANRVVVTKYCD   95 (105)
T ss_dssp             TTEECEEEEEC
T ss_pred             CCCEEEEEEeC
Confidence            99999999875

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*

Probab=99.30  E-value=4.4e-12  Score=129.24  Aligned_cols=82  Identities=13%  Similarity=0.184  Sum_probs=70.1

Q ss_pred             CCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEe
Q psy14559          9 VKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVT   88 (405)
Q Consensus         9 ~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv   88 (405)
                      .+.++|||+|||+.+|+++|+++|+.||.|.+|.|+ .  +..+++++|||||+|.+.++|..|+..+|+..+++..+.|
T Consensus       100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~-~--d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V  176 (437)
T 3pgw_S          100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMV-Y--SKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLV  176 (437)
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEee-c--cCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEE
Confidence            346899999999999999999999999999999993 3  3346889999999999999999999877777777777777


Q ss_pred             ecCCC
Q psy14559         89 PYNSG   93 (405)
Q Consensus        89 ~~~~~   93 (405)
                      .++.+
T Consensus       177 ~~a~~  181 (437)
T 3pgw_S          177 DVERG  181 (437)
T ss_pred             EEeCC
Confidence            76654

>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A

Probab=99.28  E-value=2.7e-12  Score=106.76  Aligned_cols=66  Identities=12%  Similarity=0.130  Sum_probs=54.4

Q ss_pred             CCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCC-ccccce
Q psy14559          9 VKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNT-VFIDRA   84 (405)
Q Consensus         9 ~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~-~~~~~~   84 (405)
                      ...++|||+|||+++|+++|+++|+.||+|.+|.| ..        . |||||+|.+.++|+.|++.+|. .+.++.
T Consensus        14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i-~~--------~-g~afV~f~~~~~a~~Ai~~l~g~~~~gr~   80 (115)
T 3beg_B           14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADV-YR--------D-GTGVVEFVRKEDMTYAVRKLDNTKFRSHE   80 (115)
T ss_dssp             ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEE-CT--------T-SEEEEEESSHHHHHHHHHHHTTCBCCCTT
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-ec--------C-CEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence            35689999999999999999999999999999999 21        1 8999999999999999985554 444444

>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A

Probab=99.27  E-value=1.1e-11  Score=105.55  Aligned_cols=77  Identities=10%  Similarity=0.173  Sum_probs=59.8

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccE-EEEEecchhhHHHHHhccCC-ccccc-e
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRI-CYVKFFDEKCVGISQHLTNT-VFIDR-A   84 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~-aFV~F~~~e~A~~Al~~~n~-~~~~~-~   84 (405)
                      +.....|||+||++.+|+++|+++|++||+|.+|++..+        .+|+ |||+|.+.++|+.|++.+|+ .+.++ .
T Consensus        25 ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~--------~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~   96 (130)
T 3zzy_A           25 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK--------NNQFQALLQYADPVSAQHAKLSLDGQNIYNACC   96 (130)
T ss_dssp             CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE--------TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEE
T ss_pred             CCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC--------CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCc
Confidence            345567889999999999999999999999999988431        2677 99999999999999975554 44442 4


Q ss_pred             eEEeecCC
Q psy14559         85 LVVTPYNS   92 (405)
Q Consensus        85 ~~vv~~~~   92 (405)
                      .+.+.+..
T Consensus        97 ~LrI~~ak  104 (130)
T 3zzy_A           97 TLRIDFSK  104 (130)
T ss_dssp             EEEEEECS
T ss_pred             EEEEEecC
Confidence            44455443

>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.27  E-value=1.2e-11  Score=104.46  Aligned_cols=76  Identities=20%  Similarity=0.244  Sum_probs=58.3

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccE-EEEEecchhhHHHHHhccCC-ccccc-e
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRI-CYVKFFDEKCVGISQHLTNT-VFIDR-A   84 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~-aFV~F~~~e~A~~Al~~~n~-~~~~~-~   84 (405)
                      +.....|||+||++.+|+++|+++|++||+|.+|+++.  +       .|| |||+|.+.++|..|+..+|+ .+.++ .
T Consensus        22 ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~--~-------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~   92 (124)
T 2e5i_A           22 GNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK--R-------NGIQAMVEFESVLCAQKAKAALNGADIYAGCC   92 (124)
T ss_dssp             CCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE--S-------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBS
T ss_pred             CCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe--C-------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCe
Confidence            33445578999999999999999999999999999932  1       375 99999999999999975554 45443 3


Q ss_pred             eEEeecCC
Q psy14559         85 LVVTPYNS   92 (405)
Q Consensus        85 ~~vv~~~~   92 (405)
                      .+.+.++.
T Consensus        93 ~l~V~~Ak  100 (124)
T 2e5i_A           93 TLKIEYAR  100 (124)
T ss_dssp             EEEEECCS
T ss_pred             EEEEEEec
Confidence            44444443

>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}

Probab=99.25  E-value=1.1e-11  Score=104.53  Aligned_cols=76  Identities=9%  Similarity=0.080  Sum_probs=60.1

Q ss_pred             cEEEEcCC----CCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecc----hhh----HHHHHh--ccC
Q psy14559         12 KVVQVANI----APQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFD----EKC----VGISQH--LTN   77 (405)
Q Consensus        12 ~tLfVgNL----p~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~----~e~----A~~Al~--~~n   77 (405)
                      ..|||+||    |+.+|+++|+++|+.||+|.+|.++.   |..|+.++|||||+|.+    +++    |..|+.  .+|
T Consensus         3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~---Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~ln   79 (136)
T 2j8a_A            3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFN---DPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESS   79 (136)
T ss_dssp             CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEE---CTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTT
T ss_pred             cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEe---cCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhc
Confidence            68999999    99999999999999999999999944   44689999999999996    433    677766  556


Q ss_pred             CccccceeEEeec
Q psy14559         78 TVFIDRALVVTPY   90 (405)
Q Consensus        78 ~~~~~~~~~vv~~   90 (405)
                      +..++++.+.+..
T Consensus        80 g~~I~Gr~irV~l   92 (136)
T 2j8a_A           80 GCFIMGFKFEVIL   92 (136)
T ss_dssp             CEEETTEEEEEEE
T ss_pred             CCeecCcEEEEEE
Confidence            6666555554443

>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A

Probab=99.24  E-value=2.2e-11  Score=99.86  Aligned_cols=84  Identities=13%  Similarity=0.054  Sum_probs=65.8

Q ss_pred             CCCCCcEEEEcCCCC-----CCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccc
Q psy14559          7 APVKTKVVQVANIAP-----QATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFI   81 (405)
Q Consensus         7 ~~~~~~tLfVgNLp~-----~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~   81 (405)
                      .+.++++|+|+||..     .-++++|+++|++||+|.+|+| +.+++ .++.++|+|||+|.+.++|..|++.+|+..+
T Consensus         4 ~~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i-~~~~~-~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~   81 (105)
T 2pe8_A            4 GKCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVI-FEIPG-APDDEAVRIFLEFERVESAIKAVVDLNGRYF   81 (105)
T ss_dssp             GGSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEE-EECSS-CCTTTSEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred             CCCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEE-ecCCC-CCCCCcEEEEEEECCHHHHHHHHHHHCCCEE
Confidence            356789999999973     3489999999999999999999 44321 1256899999999999999999987666666


Q ss_pred             cceeEEeecCC
Q psy14559         82 DRALVVTPYNS   92 (405)
Q Consensus        82 ~~~~~vv~~~~   92 (405)
                      +++.+.+.++.
T Consensus        82 ~Gr~i~v~~a~   92 (105)
T 2pe8_A           82 GGRVVKACFYN   92 (105)
T ss_dssp             TTEECEEEECC
T ss_pred             CCcEEEEEEcC
Confidence            66666666554

>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A

Probab=99.23  E-value=3e-11  Score=101.26  Aligned_cols=76  Identities=21%  Similarity=0.240  Sum_probs=65.9

Q ss_pred             CcEEEEeCCCC--CC---CHHHHHHHHhcCCCeeEEEEeccC------CCCCcEEEEEECCHHHHHHHHH-hCCceeCCe
Q psy14559        166 RRTLVAINIEE--SV---SPQELVDFFQKVGTVNYIRFCTRE------NDTNKYALVEFSDQACVIPALK-LNGTNLKGK  233 (405)
Q Consensus       166 ~rtvfV~NLp~--~~---tee~L~~~F~~~G~I~~i~i~~~~------~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~  233 (405)
                      .++|++.|+-.  ++   -+++|++.|++||+|.+|.|+.+.      +.++||+||+|.+.++|.+|+. |||..|.||
T Consensus        20 s~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR   99 (118)
T 3ue2_A           20 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR   99 (118)
T ss_dssp             CCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence            68999999832  22   368999999999999999997652      3467999999999999999998 999999999


Q ss_pred             eEEEeecc
Q psy14559        234 TLQMFHST  241 (405)
Q Consensus       234 ~i~V~~a~  241 (405)
                      .|.|.++.
T Consensus       100 ~i~v~~~~  107 (118)
T 3ue2_A          100 KVVAEVYD  107 (118)
T ss_dssp             ECEEEEEC
T ss_pred             EEEEEEcC
Confidence            99999875

>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A

Probab=99.22  E-value=1.1e-11  Score=116.12  Aligned_cols=77  Identities=14%  Similarity=0.258  Sum_probs=63.3

Q ss_pred             CCCCcEEEEcCCCCCC---------CHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCC
Q psy14559          8 PVKTKVVQVANIAPQA---------TRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNT   78 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~v---------TeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~   78 (405)
                      ....++|||+||+..+         |+++|+++|++||+|++|+++.         ++|||||+|.+.++|+.|+..++.
T Consensus       131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~---------~kG~AFV~F~~~~~Ae~A~~am~g  201 (240)
T 3u1l_A          131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE---------SKNCGFVKFKYQANAEFAKEAMSN  201 (240)
T ss_dssp             CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG---------GGTEEEEEESSHHHHHHHHHHHTT
T ss_pred             ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC---------CCCEEEEEeCCHHHHHHHHHHhCC
Confidence            5578999999999998         8999999999999999999932         489999999999999999965544


Q ss_pred             ccc------------cceeEEeecCCC
Q psy14559         79 VFI------------DRALVVTPYNSG   93 (405)
Q Consensus        79 ~~~------------~~~~~vv~~~~~   93 (405)
                      ..+            ++..+.|.|+..
T Consensus       202 ~~l~~~~~~e~~~~~~gr~L~V~wA~~  228 (240)
T 3u1l_A          202 QTLLLPSDKEWDDRREGTGLLVKWANE  228 (240)
T ss_dssp             CCCCCTTSTTGGGGGGSCCCEEEECC-
T ss_pred             CEEeccccccccccCCCCEEEEEEccC
Confidence            433            555666666653

>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.22  E-value=2.2e-11  Score=97.32  Aligned_cols=69  Identities=14%  Similarity=0.236  Sum_probs=56.2

Q ss_pred             CCCCcE-EEEcCCCCCCCHHH----HHHHhccC-CceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHh-ccCCcc
Q psy14559          8 PVKTKV-VQVANIAPQATRDQ----MQTLFGYL-GKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQH-LTNTVF   80 (405)
Q Consensus         8 ~~~~~t-LfVgNLp~~vTeed----Lr~lFs~~-G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~-~~n~~~   80 (405)
                      .+++.| |||+|||+++++++    |+++|+.| |+|.+|          +   .|+|||.|.+.++|+.|++ +++..+
T Consensus         5 ~~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V----------t---gG~AfV~F~~~esA~~A~~~l~G~~l   71 (96)
T 2diu_A            5 SSGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI----------T---GCSAILRFINQDSAERAQKRMENEDV   71 (96)
T ss_dssp             CCCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC----------C---TTCEEEEESSHHHHHHHHHHHTTCCS
T ss_pred             CCCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE----------e---cCEEEEEECCHHHHHHHHHHhcCCcc
Confidence            345666 99999999999998    55899999 599987          1   2999999999999999996 556667


Q ss_pred             ccceeEEee
Q psy14559         81 IDRALVVTP   89 (405)
Q Consensus        81 ~~~~~~vv~   89 (405)
                      +++.+.+--
T Consensus        72 ~gr~i~v~~   80 (96)
T 2diu_A           72 FGNRIIVSF   80 (96)
T ss_dssp             SSSCCEEES
T ss_pred             CCceEEEEe
Confidence            777666544

>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*

Probab=99.20  E-value=4.1e-11  Score=118.04  Aligned_cols=73  Identities=23%  Similarity=0.369  Sum_probs=63.3

Q ss_pred             cCcEEEEeC--CCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeC---Ce--eEE
Q psy14559        165 IRRTLVAIN--IEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLK---GK--TLQ  236 (405)
Q Consensus       165 ~~rtvfV~N--Lp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~---g~--~i~  236 (405)
                      ..++|||||  |++.+|+++|+++|++||+|.+|.+..    +||||||+|.+.++|++|++ |||..+.   |+  .|.
T Consensus        17 ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly   92 (345)
T 3tht_A           17 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY   92 (345)
T ss_dssp             CCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred             CCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEE
Confidence            378999999  588999999999999999999987742    58999999999999999999 9999883   45  577


Q ss_pred             Eeecc
Q psy14559        237 MFHST  241 (405)
Q Consensus       237 V~~a~  241 (405)
                      +.+..
T Consensus        93 ~~~~~   97 (345)
T 3tht_A           93 LNFVE   97 (345)
T ss_dssp             EEECS
T ss_pred             EEEee
Confidence            77764

>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.19  E-value=2.3e-10  Score=92.99  Aligned_cols=63  Identities=22%  Similarity=0.237  Sum_probs=56.4

Q ss_pred             CCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCC
Q psy14559        176 ESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQS  243 (405)
Q Consensus       176 ~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~  243 (405)
                      .++++++|+++|++||.|.+|.++   +.++|||||+|.+.++|..|+. +++  +.|++|+|.+++..
T Consensus        27 ~~~te~~L~~~F~~~G~V~~v~i~---~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~   90 (100)
T 2d9o_A           27 GGYSKDVLLRLLQKYGEVLNLVLS---SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQ   90 (100)
T ss_dssp             CSCCHHHHHHHHHTTSCEEEEEEE---SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCC
T ss_pred             CCCCHHHHHHHHHhcCCEEEEEEc---cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCC
Confidence            568999999999999999999996   4789999999999999999998 554  67999999998744

>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A

Probab=99.14  E-value=2e-10  Score=95.54  Aligned_cols=74  Identities=18%  Similarity=0.195  Sum_probs=63.0

Q ss_pred             CcEEEEeCCCCCCC----------HHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCee
Q psy14559        166 RRTLVAINIEESVS----------PQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKT  234 (405)
Q Consensus       166 ~rtvfV~NLp~~~t----------ee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~  234 (405)
                      .+.|.+.|+=..-.          +++|++.|++||.|.+|.+..++  ++|||||+|.+.++|.+|+. |||..|+||.
T Consensus         7 s~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~--~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~   84 (114)
T 3s6e_A            7 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS--AQGNVYVKCPSIAAAIAAVNALHGRWFAGKM   84 (114)
T ss_dssp             CSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC--TTCCEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred             CcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC--CcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence            56788888733221          35899999999999999986553  58999999999999999998 9999999999


Q ss_pred             EEEeecc
Q psy14559        235 LQMFHST  241 (405)
Q Consensus       235 i~V~~a~  241 (405)
                      |.|.++.
T Consensus        85 i~v~~~~   91 (114)
T 3s6e_A           85 ITAAYVP   91 (114)
T ss_dssp             CEEEEEC
T ss_pred             EEEEEEc
Confidence            9999975

>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A

Probab=99.10  E-value=1.2e-10  Score=95.39  Aligned_cols=83  Identities=16%  Similarity=0.119  Sum_probs=64.1

Q ss_pred             CCCcEEEEcCC--CCCC--------CHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCC
Q psy14559          9 VKTKVVQVANI--APQA--------TRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNT   78 (405)
Q Consensus         9 ~~~~tLfVgNL--p~~v--------TeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~   78 (405)
                      .++++|.+.|+  |...        .+++|++.|++||+|.+|+| +.+.+..++.++|+|||+|.+.++|..|++.+|+
T Consensus         3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i-~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG   81 (105)
T 3v4m_A            3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEI-PRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG   81 (105)
T ss_dssp             SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEEC-CCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred             CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEE-eccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence            47899999998  3333        34799999999999999999 5544222346799999999999999999987777


Q ss_pred             ccccceeEEeecCC
Q psy14559         79 VFIDRALVVTPYNS   92 (405)
Q Consensus        79 ~~~~~~~~vv~~~~   92 (405)
                      ..++++.+.+.+++
T Consensus        82 ~~f~GR~i~v~~~~   95 (105)
T 3v4m_A           82 RKFANRVVVTKYCD   95 (105)
T ss_dssp             CEETTEECEEEEEC
T ss_pred             CEeCCCEEEEEEeC
Confidence            66666666665543

>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.09  E-value=2e-10  Score=94.80  Aligned_cols=78  Identities=14%  Similarity=0.158  Sum_probs=62.0

Q ss_pred             CCCCcEEEEcCCCCCCC-----------HHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhcc
Q psy14559          8 PVKTKVVQVANIAPQAT-----------RDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLT   76 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vT-----------eedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~   76 (405)
                      +.++++|+|+||.....           +++|+++|++||+|.+|.| +. +     .++|||||+|.+.++|+.|+..+
T Consensus        12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~-~-----~~~G~afV~f~~~~~A~~Ai~~l   84 (112)
T 2dit_A           12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FD-R-----HPDGVASVSFRDPEEADYCIQTL   84 (112)
T ss_dssp             CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ET-T-----CTTCEEEEECSCHHHHHHHHHHS
T ss_pred             CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ec-C-----CCCEEEEEEECCHHHHHHHHHHc
Confidence            66789999999954432           6899999999999999976 32 1     26999999999999999999766


Q ss_pred             CCccccceeEEeecCC
Q psy14559         77 NTVFIDRALVVTPYNS   92 (405)
Q Consensus        77 n~~~~~~~~~vv~~~~   92 (405)
                      |+..+++..+.+.++.
T Consensus        85 ng~~~~gr~l~v~~a~  100 (112)
T 2dit_A           85 DGRWFGGRQITAQAWD  100 (112)
T ss_dssp             TTCEETTEECEEEECC
T ss_pred             CCCEECCcEEEEEEeC
Confidence            6666666666666554

>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*

Probab=99.03  E-value=2.4e-10  Score=112.53  Aligned_cols=63  Identities=17%  Similarity=0.236  Sum_probs=55.0

Q ss_pred             CCCCcEEEEcC--CCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCc
Q psy14559          8 PVKTKVVQVAN--IAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTV   79 (405)
Q Consensus         8 ~~~~~tLfVgN--Lp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~   79 (405)
                      ..++++|||+|  |+..+||++|+++|++||+|.+|.+ +        .++|||||+|.+.++|+.|+..+|+.
T Consensus        15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~-~--------~~kgfaFV~f~~~~~A~~Ai~~lnG~   79 (345)
T 3tht_A           15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLM-P--------PNKPYSFARYRTTEESKRAYVTLNGK   79 (345)
T ss_dssp             SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEEC-C--------TTCSEEEEEESSHHHHHHHHHHTTTC
T ss_pred             CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEE-e--------CCCCEEEEEECCHHHHHHHHHHhCCC
Confidence            56789999999  5789999999999999999999887 2        14899999999999999999765543

>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A

Probab=98.97  E-value=9.4e-10  Score=92.05  Aligned_cols=83  Identities=12%  Similarity=0.079  Sum_probs=64.6

Q ss_pred             CCCcEEEEcCCCC-----CCCHHHHHHHhccCCceEEEEEeeccCCC--CCCccccEEEEEecchhhHHHHHhccCCccc
Q psy14559          9 VKTKVVQVANIAP-----QATRDQMQTLFGYLGKVEDLRLYPIARDV--SIPVQSRICYVKFFDEKCVGISQHLTNTVFI   81 (405)
Q Consensus         9 ~~~~tLfVgNLp~-----~vTeedLr~lFs~~G~I~~v~i~~~~~d~--~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~   81 (405)
                      .++++|+++|+-.     .-.+++|++.|++||+|.+|+| +.+...  .++.++|+|||+|.+.++|..|++.+|+..+
T Consensus        18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I-~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f   96 (118)
T 3ue2_A           18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVII-YQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF   96 (118)
T ss_dssp             HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEE-EEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEE-eecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEE
Confidence            4789999999842     2347999999999999999999 443321  1356789999999999999999987777777


Q ss_pred             cceeEEeecCC
Q psy14559         82 DRALVVTPYNS   92 (405)
Q Consensus        82 ~~~~~vv~~~~   92 (405)
                      +++.+.+.++.
T Consensus        97 ~GR~i~v~~~~  107 (118)
T 3ue2_A           97 AGRKVVAEVYD  107 (118)
T ss_dssp             TTEECEEEEEC
T ss_pred             CCcEEEEEEcC
Confidence            66666665544

>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3

Probab=98.94  E-value=3.1e-10  Score=92.74  Aligned_cols=70  Identities=16%  Similarity=0.121  Sum_probs=53.8

Q ss_pred             EcCCCCCCCHHHHHHHh------------ccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccc
Q psy14559         16 VANIAPQATRDQMQTLF------------GYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDR   83 (405)
Q Consensus        16 VgNLp~~vTeedLr~lF------------s~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~   83 (405)
                      +.|||..+|+++|++.|            ++||+|.+|++ +.+.   .++++|||||+|.+.++|..|+..+|+..+++
T Consensus        20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i-~~~~---~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~G   95 (104)
T 1jmt_A           20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNV-CDNL---GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNG   95 (104)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEE-CCSS---SSSSEEEEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred             cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEE-EeCC---CCCccEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence            56677778888887766            99999999999 4332   36789999999999999999997666555555


Q ss_pred             eeEEee
Q psy14559         84 ALVVTP   89 (405)
Q Consensus        84 ~~~vv~   89 (405)
                      +.+.+.
T Consensus        96 r~i~v~  101 (104)
T 1jmt_A           96 QPIHAE  101 (104)
T ss_dssp             EECCEE
T ss_pred             EEEEEE
Confidence            554443

>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.93  E-value=3.7e-09  Score=83.66  Aligned_cols=71  Identities=24%  Similarity=0.342  Sum_probs=60.7

Q ss_pred             CcEEEEeCCCC----CCCH----HHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEE
Q psy14559        166 RRTLVAINIEE----SVSP----QELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQM  237 (405)
Q Consensus       166 ~rtvfV~NLp~----~~te----e~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V  237 (405)
                      ..||+|.-.+.    +.-.    .+|.+.|++||.|..+++..+      .+||+|.+.++|.+|+.|||..+.||.|+|
T Consensus         7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d------~~fVtF~d~~sAlaAi~mnG~~v~Gr~LkV   80 (91)
T 2dnr_A            7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED------KMWVTFLEGSSALNVLSLNGKELLNRTITI   80 (91)
T ss_dssp             SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS------SEEEEESSHHHHHHGGGGTTCEETTEEEEE
T ss_pred             CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC------CEEEEECChHHHHHHHhcCCeEeCCeEEEE
Confidence            56888887762    3333    679999999999999999654      389999999999999999999999999999


Q ss_pred             eeccC
Q psy14559        238 FHSTQ  242 (405)
Q Consensus       238 ~~a~~  242 (405)
                      +.++.
T Consensus        81 ~lkt~   85 (91)
T 2dnr_A           81 ALKSP   85 (91)
T ss_dssp             EECCC
T ss_pred             EeCCC
Confidence            99863

>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.89  E-value=6.8e-09  Score=84.23  Aligned_cols=75  Identities=16%  Similarity=0.164  Sum_probs=57.8

Q ss_pred             CCCCcEEEEcCCC-------CCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCcc
Q psy14559          8 PVKTKVVQVANIA-------PQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVF   80 (405)
Q Consensus         8 ~~~~~tLfVgNLp-------~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~   80 (405)
                      .....+|.|.-..       ..+|+++|+++|++||+|.+|.+.        ++++|||||+|.+.++|+.|++..+. +
T Consensus         7 ~~~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~--------~~~rGfaFVeF~~~~~A~~Ai~~~~~-~   77 (100)
T 2d9o_A            7 GQGTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS--------SKKPGTAVVEFATVKAAELAVQNEVG-L   77 (100)
T ss_dssp             CCSSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE--------SSSSSEEEEEESCHHHHHHHHHTCCB-C
T ss_pred             CCccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc--------cCCCCEEEEEECCHHHHHHHHHhcCC-C
Confidence            3346778887765       468999999999999999999992        34699999999999999999976443 3


Q ss_pred             ccceeEEeecCC
Q psy14559         81 IDRALVVTPYNS   92 (405)
Q Consensus        81 ~~~~~~vv~~~~   92 (405)
                      .++.+ .+.+..
T Consensus        78 ~g~~l-~V~~a~   88 (100)
T 2d9o_A           78 VDNPL-KISWLE   88 (100)
T ss_dssp             SSSBC-EEECSS
T ss_pred             CCCeE-EEEEcc
Confidence            44444 444443

>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.79  E-value=1.9e-08  Score=84.18  Aligned_cols=72  Identities=17%  Similarity=0.201  Sum_probs=62.8

Q ss_pred             CcEEEEeCCCCC-CCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECC-HHHHHHHHH-hC--CceeCCeeEEEeec
Q psy14559        166 RRTLVAINIEES-VSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSD-QACVIPALK-LN--GTNLKGKTLQMFHS  240 (405)
Q Consensus       166 ~rtvfV~NLp~~-~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~-~e~A~~Al~-ln--g~~l~g~~i~V~~a  240 (405)
                      +..|||+||+++ ++.++|+++|++||+|.+|.+..+.    ..|||.|.+ .++|..|+. +|  |..|.|..++++..
T Consensus        18 G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~----~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL   93 (121)
T 1owx_A           18 GCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA----KEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVL   93 (121)
T ss_dssp             CCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC----SEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEEC
T ss_pred             CeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC----CEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEEC
Confidence            678999999999 9999999999999999999996542    269999999 889999988 74  68999998888764


Q ss_pred             c
Q psy14559        241 T  241 (405)
Q Consensus       241 ~  241 (405)
                      .
T Consensus        94 ~   94 (121)
T 1owx_A           94 E   94 (121)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A

Probab=98.78  E-value=1.3e-08  Score=84.62  Aligned_cols=80  Identities=15%  Similarity=0.172  Sum_probs=62.4

Q ss_pred             cCCCCCcEEEEcCCCCCC----------CHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhc
Q psy14559          6 VAPVKTKVVQVANIAPQA----------TRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHL   75 (405)
Q Consensus         6 ~~~~~~~tLfVgNLp~~v----------TeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~   75 (405)
                      ..+-++++|.+.|+=..-          .+++|++.|++||.|.+|.+ +.+      ..+|+|||+|.+.++|..|++.
T Consensus         2 ~~p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i-~~~------~~~G~~fV~f~~~e~A~~Ai~~   74 (114)
T 3s6e_A            2 VQPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYV-DKN------SAQGNVYVKCPSIAAAIAAVNA   74 (114)
T ss_dssp             CCCCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEE-CTT------CTTCCEEEECSSHHHHHHHHHH
T ss_pred             CCCCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEE-ecC------CCcEEEEEEECCHHHHHHHHHH
Confidence            346678999999975322          24588999999999999999 332      2489999999999999999987


Q ss_pred             cCCccccceeEEeecCC
Q psy14559         76 TNTVFIDRALVVTPYNS   92 (405)
Q Consensus        76 ~n~~~~~~~~~vv~~~~   92 (405)
                      +|+..++++.+.+.++.
T Consensus        75 lnG~~f~GR~i~v~~~~   91 (114)
T 3s6e_A           75 LHGRWFAGKMITAAYVP   91 (114)
T ss_dssp             HTTCEETTEECEEEEEC
T ss_pred             hCCCEECCEEEEEEEEc
Confidence            77777766666666544

>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.71  E-value=2.2e-08  Score=79.63  Aligned_cols=70  Identities=21%  Similarity=0.392  Sum_probs=60.4

Q ss_pred             CcEEEEeCCCCC------CCH---HHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEE
Q psy14559        166 RRTLVAINIEES------VSP---QELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQ  236 (405)
Q Consensus       166 ~rtvfV~NLp~~------~te---e~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~  236 (405)
                      ..||+|.-++++      ..+   .+|.+.|++||+|..+++..+.      +||+|.+.++|.+|+.|||..+.||.|+
T Consensus        15 D~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~------~fVtF~d~~sAl~AI~ldG~~v~Gr~L~   88 (95)
T 1ufw_A           15 DATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ------MLVTFADSHSALSVLDVDGMKVKGRAVK   88 (95)
T ss_dssp             TCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE------EEEECSCSHHHHHHHHGGGSEETTEEEE
T ss_pred             CCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc------EEEEEcChHHHHHHHhcCCeeeCCeEEE
Confidence            569999988753      222   5699999999999999997654      9999999999999999999999999999


Q ss_pred             Eeecc
Q psy14559        237 MFHST  241 (405)
Q Consensus       237 V~~a~  241 (405)
                      |+...
T Consensus        89 V~~k~   93 (95)
T 1ufw_A           89 ISGPS   93 (95)
T ss_dssp             EECCC
T ss_pred             EeccC
Confidence            98753

>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.62  E-value=8e-08  Score=80.45  Aligned_cols=77  Identities=10%  Similarity=0.078  Sum_probs=59.3

Q ss_pred             CCCCcEEEEcCCCCC-CCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecc-hhhHHHHHhcc--CCccccc
Q psy14559          8 PVKTKVVQVANIAPQ-ATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFD-EKCVGISQHLT--NTVFIDR   83 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~-vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~-~e~A~~Al~~~--n~~~~~~   83 (405)
                      -...+.|||+||++. +|+++|+++|+.||+|..|.+ ..+        ...|||.|.+ ..+|..|+...  +...+.+
T Consensus        15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~-~~g--------~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g   85 (121)
T 1owx_A           15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDF-VRG--------AKEGIILFKEKAKEALGKAKDANNGNLQLRN   85 (121)
T ss_dssp             CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEEC-CTT--------CSEEEEEESSCHHHHHHHHHHTTTSCBCTTS
T ss_pred             ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEE-ecC--------CCEEEEEECCChHHHHHHHHHhhcCCcEEeC
Confidence            456799999999999 999999999999999999999 221        2259999999 78888887543  3555555


Q ss_pred             eeEEeecCCC
Q psy14559         84 ALVVTPYNSG   93 (405)
Q Consensus        84 ~~~vv~~~~~   93 (405)
                      ....+....|
T Consensus        86 ~~~~~evL~G   95 (121)
T 1owx_A           86 KEVTWEVLEG   95 (121)
T ss_dssp             SSEEEEECCH
T ss_pred             cEEEEEECCC
Confidence            5555554444

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=98.58  E-value=8e-08  Score=88.38  Aligned_cols=64  Identities=22%  Similarity=0.211  Sum_probs=57.4

Q ss_pred             CCHHHHHHHHhcCCCeeEEEEecc------CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559        178 VSPQELVDFFQKVGTVNYIRFCTR------ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST  241 (405)
Q Consensus       178 ~tee~L~~~F~~~G~I~~i~i~~~------~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~  241 (405)
                      -.+++|++.|++||.|.++.++.+      ++.++|++||+|.+.++|.+|+. |||..+.||.|.+.++.
T Consensus       141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~  211 (222)
T 3dxb_A          141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD  211 (222)
T ss_dssp             THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred             HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence            356899999999999999999743      34789999999999999999999 99999999999999975

>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.22  E-value=3.9e-06  Score=66.28  Aligned_cols=71  Identities=15%  Similarity=0.200  Sum_probs=54.3

Q ss_pred             CCCCcEEEEcCCCC----CCCH----HHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCc
Q psy14559          8 PVKTKVVQVANIAP----QATR----DQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTV   79 (405)
Q Consensus         8 ~~~~~tLfVgNLp~----~vTe----edLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~   79 (405)
                      .++..||+|.-.+.    +.-.    .+|.+.|++||+|..+++ ..          +.+||+|.+.++|.+|+.+++..
T Consensus         4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~-~~----------d~~fVtF~d~~sAlaAi~mnG~~   72 (91)
T 2dnr_A            4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRF-VE----------DKMWVTFLEGSSALNVLSLNGKE   72 (91)
T ss_dssp             CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEE-CS----------SSEEEEESSHHHHHHGGGGTTCE
T ss_pred             CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEE-ec----------CCEEEEECChHHHHHHHhcCCeE
Confidence            45678888888772    3444    668899999999999999 22          22999999999999999966666


Q ss_pred             cccceeEEee
Q psy14559         80 FIDRALVVTP   89 (405)
Q Consensus        80 ~~~~~~~vv~   89 (405)
                      +.++.+.+-.
T Consensus        73 v~Gr~LkV~l   82 (91)
T 2dnr_A           73 LLNRTITIAL   82 (91)
T ss_dssp             ETTEEEEEEE
T ss_pred             eCCeEEEEEe
Confidence            6666666544

>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}

Probab=98.13  E-value=1e-05  Score=65.72  Aligned_cols=71  Identities=21%  Similarity=0.361  Sum_probs=63.6

Q ss_pred             cCcEEEEeCCCCCCCHHHHHHHHhcC-----CCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEe
Q psy14559        165 IRRTLVAINIEESVSPQELVDFFQKV-----GTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMF  238 (405)
Q Consensus       165 ~~rtvfV~NLp~~~tee~L~~~F~~~-----G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~  238 (405)
                      ..++|=+-|||..+++..++.+.+.+     |.|..+.+..|-    +-|+|+|.+...|-+|.. |+|..|.|++|++.
T Consensus        20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH----~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~g   95 (117)
T 2l9w_A           20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF----NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSG   95 (117)
T ss_dssp             TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT----TEEEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred             CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC----CceEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence            37899999999999999999999999     999999997653    359999999999988864 99999999999986


Q ss_pred             e
Q psy14559        239 H  239 (405)
Q Consensus       239 ~  239 (405)
                      -
T Consensus        96 T   96 (117)
T 2l9w_A           96 T   96 (117)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=98.05  E-value=7.3e-06  Score=75.11  Aligned_cols=83  Identities=13%  Similarity=0.121  Sum_probs=60.8

Q ss_pred             CCcEEEEcCCC-----CCCCHHHHHHHhccCCceEEEEEeecc-CCCCCCccccEEEEEecchhhHHHHHhccCCccccc
Q psy14559         10 KTKVVQVANIA-----PQATRDQMQTLFGYLGKVEDLRLYPIA-RDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDR   83 (405)
Q Consensus        10 ~~~tLfVgNLp-----~~vTeedLr~lFs~~G~I~~v~i~~~~-~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~   83 (405)
                      ....+.+.|+-     ..-.+++|++.|++||+|.++.+.... .+..++.++|++||+|.+.++|.+|+..+|+.++++
T Consensus       123 ~s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~g  202 (222)
T 3dxb_A          123 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG  202 (222)
T ss_dssp             BCSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred             ccccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECC
Confidence            34555555543     234678999999999999999993221 122345789999999999999999998777777766


Q ss_pred             eeEEeecCC
Q psy14559         84 ALVVTPYNS   92 (405)
Q Consensus        84 ~~~vv~~~~   92 (405)
                      +.+.+.+++
T Consensus       203 r~i~~~~~~  211 (222)
T 3dxb_A          203 RKVVAEVYD  211 (222)
T ss_dssp             SBCEEEECC
T ss_pred             eEEEEEEcC
Confidence            666665544

>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.04  E-value=6.6e-06  Score=65.35  Aligned_cols=71  Identities=15%  Similarity=0.161  Sum_probs=55.4

Q ss_pred             CCCCcEEEEcCCCCC-----CCH----HHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCC
Q psy14559          8 PVKTKVVQVANIAPQ-----ATR----DQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNT   78 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~-----vTe----edLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~   78 (405)
                      .++..||+|.-+++.     .-+    .+|.+.|+.||+|..+++ ..++          +||+|.+.++|.+|+++++.
T Consensus        12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~-v~d~----------~fVtF~d~~sAl~AI~ldG~   80 (95)
T 1ufw_A           12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRI-NQGQ----------MLVTFADSHSALSVLDVDGM   80 (95)
T ss_dssp             CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEE-ETTE----------EEEECSCSHHHHHHHHGGGS
T ss_pred             CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEE-ecCc----------EEEEEcChHHHHHHHhcCCe
Confidence            457889999998743     223    568889999999999999 3221          99999999999999996666


Q ss_pred             ccccceeEEee
Q psy14559         79 VFIDRALVVTP   89 (405)
Q Consensus        79 ~~~~~~~~vv~   89 (405)
                      .+.++.+.+..
T Consensus        81 ~v~Gr~L~V~~   91 (95)
T 1ufw_A           81 KVKGRAVKISG   91 (95)
T ss_dssp             EETTEEEEEEC
T ss_pred             eeCCeEEEEec
Confidence            66666666544

>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.49  E-value=0.00092  Score=53.70  Aligned_cols=70  Identities=16%  Similarity=0.146  Sum_probs=61.4

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhc----C-CCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeec
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQK----V-GTVNYIRFCTRENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHS  240 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~----~-G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a  240 (405)
                      +++|.|.|||+++.++.|.-+|+.    . |+|.++....      +-|+|+|.+.+.|++.|+...+.|.|.+|.|.+.
T Consensus         8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~------~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~P~   81 (104)
T 2dhx_A            8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG------CGGVLTFREPADAERVLAQADHELHGAQLSLRPA   81 (104)
T ss_dssp             CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET------TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEEEC
T ss_pred             ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC------CcEEEEEcChHHHHHHhcCCcceecCeEEEEEcC
Confidence            789999999999999999999996    2 5899887632      5799999999999999987779999999999875


Q ss_pred             c
Q psy14559        241 T  241 (405)
Q Consensus       241 ~  241 (405)
                      .
T Consensus        82 ~   82 (104)
T 2dhx_A           82 P   82 (104)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.43  E-value=0.001  Score=53.44  Aligned_cols=75  Identities=12%  Similarity=0.090  Sum_probs=59.8

Q ss_pred             CCCCCcEEEEcCCCCCCCHHHHHHHhccC-----CceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccc
Q psy14559          7 APVKTKVVQVANIAPQATRDQMQTLFGYL-----GKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFI   81 (405)
Q Consensus         7 ~~~~~~tLfVgNLp~~vTeedLr~lFs~~-----G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~   81 (405)
                      +....++|.|.|||+.+.++.|.-+|+.-     |+|.++...+           +-|+|.|.+.+.|+..|+...-.+.
T Consensus         4 ~~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-----------~~AvItF~d~~va~rVL~k~~H~L~   72 (104)
T 2dhx_A            4 GSSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-----------CGGVLTFREPADAERVLAQADHELH   72 (104)
T ss_dssp             SCCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-----------TEEEEEESSHHHHHHHHTCSCCBSS
T ss_pred             CccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-----------CcEEEEEcChHHHHHHhcCCcceec
Confidence            45567899999999999999999999872     7899998832           4599999999999999877555566


Q ss_pred             cceeEEeecCC
Q psy14559         82 DRALVVTPYNS   92 (405)
Q Consensus        82 ~~~~~vv~~~~   92 (405)
                      +-.+.+.++..
T Consensus        73 ~~~LsV~P~~~   83 (104)
T 2dhx_A           73 GAQLSLRPAPP   83 (104)
T ss_dssp             SSBCEEEECCC
T ss_pred             CeEEEEEcCCC
Confidence            66666666443

>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1

Probab=97.20  E-value=0.0021  Score=53.12  Aligned_cols=71  Identities=8%  Similarity=0.120  Sum_probs=60.1

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCceeCC-eeEEEeecc
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALKLNGTNLKG-KTLQMFHST  241 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~lng~~l~g-~~i~V~~a~  241 (405)
                      .+.|.|-++|+.. -..+...|++||.|.+....    ....+-.|.|.+..+|++||..||..+.| -.|-|.+..
T Consensus        24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~----~~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~~   95 (119)
T 1wwh_A           24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS----NTGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPCI   95 (119)
T ss_dssp             GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC----SSSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEECC
T ss_pred             CCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC----CCCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEECC
Confidence            6789999999986 56778999999999988762    23569999999999999999999999985 677887753

>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1

Probab=97.13  E-value=0.0011  Score=53.39  Aligned_cols=73  Identities=18%  Similarity=0.302  Sum_probs=60.3

Q ss_pred             CcEEEEeCCCCCC-CH----HHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEee
Q psy14559        166 RRTLVAINIEESV-SP----QELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFH  239 (405)
Q Consensus       166 ~rtvfV~NLp~~~-te----e~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~  239 (405)
                      ..+|+|.||+.++ +.    +.++++|..|+++.......    +-+=.-|.|.++++|.+|.. |+|..+.|+.|+|-+
T Consensus         5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lk----SFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YF   80 (104)
T 1wey_A            5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFK----SFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYF   80 (104)
T ss_dssp             CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEET----TTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEEC
T ss_pred             CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecC----cceEEEEEeCChHHHHHHHHHhccceecCceeEEEe
Confidence            5689999999866 32    57799999999888876532    23347899999999999987 999999999999999


Q ss_pred             ccC
Q psy14559        240 STQ  242 (405)
Q Consensus       240 a~~  242 (405)
                      ++.
T Consensus        81 gq~   83 (104)
T 1wey_A           81 AQT   83 (104)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            873

>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}

Probab=97.02  E-value=0.0013  Score=53.32  Aligned_cols=71  Identities=8%  Similarity=0.072  Sum_probs=59.6

Q ss_pred             CCcEEEEcCCCCCCCHHHHHHHhccC-----CceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHH-hccCCccccc
Q psy14559         10 KTKVVQVANIAPQATRDQMQTLFGYL-----GKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQ-HLTNTVFIDR   83 (405)
Q Consensus        10 ~~~tLfVgNLp~~vTeedLr~lFs~~-----G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al-~~~n~~~~~~   83 (405)
                      ..++|-+=|||.++++..|+.|.+.+     |.|..+.+.|..         +-|+|+|.+...|-+|. .+++..|-++
T Consensus        20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH---------~GAivef~d~~~AgKasLaL~G~ef~gr   90 (117)
T 2l9w_A           20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF---------NGAIIIFRDSKFAAKMLMILNGSQFQGK   90 (117)
T ss_dssp             TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT---------TEEEEECSCHHHHHHHHHHHSSEEETTE
T ss_pred             CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC---------CceEEEEccchhhHHHHhhcCCeeecCe
Confidence            37999999999999999999999999     999999995532         34999999999987775 7777777777


Q ss_pred             eeEEee
Q psy14559         84 ALVVTP   89 (405)
Q Consensus        84 ~~~vv~   89 (405)
                      .+.|..
T Consensus        91 ~Lr~gT   96 (117)
T 2l9w_A           91 VIRSGT   96 (117)
T ss_dssp             EEEEEC
T ss_pred             EEEecC
Confidence            777654

>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}

Probab=96.80  E-value=0.0013  Score=55.19  Aligned_cols=75  Identities=20%  Similarity=0.323  Sum_probs=57.3

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEE-EEec-------------c-CC-CCCcEEEEEECCHHHHHHHHHhCCce
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYI-RFCT-------------R-EN-DTNKYALVEFSDQACVIPALKLNGTN  229 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i-~i~~-------------~-~~-~~rg~afV~F~~~e~A~~Al~lng~~  229 (405)
                      ..-|.|-++|++.+.. +.+.|++||.|.+- ...+             . +. ....+-.|+|.+..+|.+||..||..
T Consensus         7 e~~VtVFGFp~~~~~~-VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~i   85 (132)
T 3p3d_A            7 ELAILVFGYPETMANQ-VIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAV   85 (132)
T ss_dssp             -CEEEEECCCGGGHHH-HHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCE
T ss_pred             ceEEEEEecCHHHHHH-HHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeE
Confidence            4568888998877755 55889999998762 1111             0 11 13568899999999999999999999


Q ss_pred             eCCeeEEEeecc
Q psy14559        230 LKGKTLQMFHST  241 (405)
Q Consensus       230 l~g~~i~V~~a~  241 (405)
                      |.|..|-|.+..
T Consensus        86 i~G~mIGV~Py~   97 (132)
T 3p3d_A           86 FNGVLLGVIPYT   97 (132)
T ss_dssp             ETTEECEEEECC
T ss_pred             eCcEEEEEEECC
Confidence            999998998764

>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4

Probab=96.50  E-value=0.0093  Score=46.96  Aligned_cols=70  Identities=17%  Similarity=0.351  Sum_probs=51.4

Q ss_pred             cEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCC-CccccEEEEEecchhhHHHHH-hccCCccccc
Q psy14559         12 KVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSI-PVQSRICYVKFFDEKCVGISQ-HLTNTVFIDR   83 (405)
Q Consensus        12 ~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~-~~~~g~aFV~F~~~e~A~~Al-~~~n~~~~~~   83 (405)
                      ..|.|++||++.||+++.+..+...++.-....+-+.  +. ...-.-|||.|.+.+++..-. ..++..|.|.
T Consensus         2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~--s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~   73 (91)
T 1uw4_A            2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDT--SLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDN   73 (91)
T ss_dssp             CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCC--SSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECT
T ss_pred             cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCcc--CCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcC
Confidence            4789999999999999999999999877666644322  21 123346999999998876554 4566667664

>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*

Probab=96.45  E-value=0.0044  Score=49.24  Aligned_cols=57  Identities=18%  Similarity=0.364  Sum_probs=46.4

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhcc
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLT   76 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~   76 (405)
                      +...+++++ +.|+.....||.++|+.||.| .|+++   .|.       .|||.|.+++.|..|+.+.
T Consensus        13 p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~Wi---dDT-------sAlvvf~~~~~a~~al~~i   69 (100)
T 1whv_A           13 PKRDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWI---DDT-------SAFVSLSQPEQVQIAVNTS   69 (100)
T ss_dssp             CCCCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEE---ETT-------EEEEECSCHHHHHHHHHHH
T ss_pred             CCCCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEE---cCC-------eEEEEecCHHHHHHHHHhc
Confidence            556788888 999999999999999999964 45552   122       4999999999999998753

>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4

Probab=96.33  E-value=0.017  Score=45.43  Aligned_cols=67  Identities=15%  Similarity=0.275  Sum_probs=53.6

Q ss_pred             cEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEe-cc-C-C-CCCcEEEEEECCHHHHHHHHH-hCCceeCCe
Q psy14559        167 RTLVAINIEESVSPQELVDFFQKVGTVNYIRFC-TR-E-N-DTNKYALVEFSDQACVIPALK-LNGTNLKGK  233 (405)
Q Consensus       167 rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~-~~-~-~-~~rg~afV~F~~~e~A~~Al~-lng~~l~g~  233 (405)
                      .+|.|.+||+++|++++.+.++..+.+...... .+ . + ..-.-|||.|.+.+++..-.+ ++|+.|.+.
T Consensus         2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~   73 (91)
T 1uw4_A            2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDN   73 (91)
T ss_dssp             CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECT
T ss_pred             cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcC
Confidence            378999999999999999999999888777664 22 1 1 223569999999999888877 999887643

>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}

Probab=96.25  E-value=0.0053  Score=48.91  Aligned_cols=54  Identities=17%  Similarity=0.295  Sum_probs=43.9

Q ss_pred             CcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhcc
Q psy14559         11 TKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLT   76 (405)
Q Consensus        11 ~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~   76 (405)
                      .+++++ ++|+...-.||.++|+.||. ..|+++   .|.       .|||.|.+++.|..|+.+.
T Consensus         6 ~HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~Wi---dDT-------sAlvvf~~~~~a~~al~~i   59 (101)
T 3ctr_A            6 DHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWI---DDT-------SAFVSLSQPEQVKIAVNTS   59 (101)
T ss_dssp             EEEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEE---ETT-------EEEEEEEEECHHHHHHHHH
T ss_pred             CeEEEE-eCChhhhhHHHHHHHhccCC-EEEEEE---cCC-------eEEEEecCHHHHHHHHHhc
Confidence            467788 99999999999999999994 455562   222       4999999999999998753

>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1

Probab=96.14  E-value=0.019  Score=47.41  Aligned_cols=75  Identities=9%  Similarity=0.136  Sum_probs=59.1

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeE-
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALV-   86 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~-   86 (405)
                      ....+-|.|=+.|+.. -..+...|++||+|.+... +        ...++-.|.|.+..+|++||..++..+-+..++ 
T Consensus        21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~-~--------~~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIG   90 (119)
T 1wwh_A           21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM-S--------NTGNWMHIRYQSKLQARKALSKDGRIFGESIMIG   90 (119)
T ss_dssp             CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE-C--------SSSSEEEEEESSHHHHHHHHTTTTCEETTTEECE
T ss_pred             CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc-C--------CCCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEE
Confidence            4456889999999885 5678889999999999876 2        236799999999999999999988777655554 


Q ss_pred             EeecCC
Q psy14559         87 VTPYNS   92 (405)
Q Consensus        87 vv~~~~   92 (405)
                      |+++.+
T Consensus        91 V~p~~d   96 (119)
T 1wwh_A           91 VKPCID   96 (119)
T ss_dssp             EEECCC
T ss_pred             EEECCC
Confidence            455544

>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}

Probab=95.76  E-value=0.0054  Score=62.30  Aligned_cols=66  Identities=21%  Similarity=0.321  Sum_probs=47.7

Q ss_pred             cccCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCceeCC
Q psy14559        163 EEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALKLNGTNLKG  232 (405)
Q Consensus       163 ~~~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~lng~~l~g  232 (405)
                      ++..|+|||. .|..+++.+|.++|++||+|.++.+-.+.|   -||.|+|.+.+++..++...+....+
T Consensus        50 ~qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g---~~~~vef~~~~~~~~~~~~~~~p~~~  115 (464)
T 3pq1_A           50 EQAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG---LYAVVEFCQKESIGSLQNGTHTPXXX  115 (464)
T ss_dssp             HHHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS---EEEEEECC---CCHHHHSSCCCCCCB
T ss_pred             HHhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC---eEEEEEeCCHHHHHHHHhccCCCccc
Confidence            3447899997 799999999999999999999998854433   69999999999999887654444333

>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*

Probab=95.61  E-value=0.032  Score=44.27  Aligned_cols=51  Identities=20%  Similarity=0.297  Sum_probs=43.4

Q ss_pred             cEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH
Q psy14559        167 RTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK  224 (405)
Q Consensus       167 rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~  224 (405)
                      .-+++ ++|.+....||.++|+.||.| .|+.++|+     .|||.|.+++.|..|+.
T Consensus        17 HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-----sAlvvf~~~~~a~~al~   67 (100)
T 1whv_A           17 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-----SAFVSLSQPEQVQIAVN   67 (100)
T ss_dssp             SEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-----EEEEECSCHHHHHHHHH
T ss_pred             eEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-----eEEEEecCHHHHHHHHH
Confidence            44555 999999999999999999943 66666664     59999999999999988

>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}

Probab=95.31  E-value=0.023  Score=45.17  Aligned_cols=53  Identities=17%  Similarity=0.241  Sum_probs=44.3

Q ss_pred             EEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hC
Q psy14559        168 TLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LN  226 (405)
Q Consensus       168 tvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-ln  226 (405)
                      -||+-++|.+....||.++|+.|| -..|+.+.|+     .|||.|.+++.|..|+. ++
T Consensus         7 HV~~l~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-----sAlvvf~~~~~a~~al~~i~   60 (101)
T 3ctr_A            7 HVLHVTFPKEWKTSDLYQLFSAFG-NIQISWIDDT-----SAFVSLSQPEQVKIAVNTSK   60 (101)
T ss_dssp             EEEEEECCTTCCHHHHHHHTTTSE-EEEEEEEETT-----EEEEEEEEECHHHHHHHHHT
T ss_pred             eEEEEeCChhhhhHHHHHHHhccC-CEEEEEEcCC-----eEEEEecCHHHHHHHHHhcc
Confidence            455559999999999999999999 3466666664     59999999999999998 53

>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}

Probab=95.23  E-value=0.011  Score=60.09  Aligned_cols=57  Identities=14%  Similarity=0.285  Sum_probs=43.2

Q ss_pred             CcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhcc
Q psy14559         11 TKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLT   76 (405)
Q Consensus        11 ~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~   76 (405)
                      .|+|+|. .|+.+++.+|.++|++||+|.++..+. +       ..-||.|+|.+.+++..++...
T Consensus        53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~-~-------~g~~~~vef~~~~~~~~~~~~~  109 (464)
T 3pq1_A           53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYE-S-------FGLYAVVEFCQKESIGSLQNGT  109 (464)
T ss_dssp             HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEEC-S-------SSEEEEEECC---CCHHHHSSC
T ss_pred             cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEc-c-------CCeEEEEEeCCHHHHHHHHhcc
Confidence            4899998 799999999999999999999999942 1       2479999999999999887554

>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1

Probab=94.91  E-value=0.06  Score=43.24  Aligned_cols=68  Identities=12%  Similarity=0.231  Sum_probs=52.2

Q ss_pred             CcEEEEcCCCCCC-C----HHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHH-hccCCccccce
Q psy14559         11 TKVVQVANIAPQA-T----RDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQ-HLTNTVFIDRA   84 (405)
Q Consensus        11 ~~tLfVgNLp~~v-T----eedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al-~~~n~~~~~~~   84 (405)
                      ..+|+|.||+..+ +    .+.++++|..|+++.....+++         -+-..|.|.+.++|..|- ++.+..+.+..
T Consensus         5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS---------FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~   75 (104)
T 1wey_A            5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS---------FKRVRINFSNPLSAADARLRLHKTEFLGKE   75 (104)
T ss_dssp             CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT---------TTEEEEECSSTTHHHHHHHTSTTSEETTEE
T ss_pred             CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc---------ceEEEEEeCChHHHHHHHHHhccceecCce
Confidence            4689999999865 3    3567899999999999888543         223689999999999995 56667777765


Q ss_pred             eEE
Q psy14559         85 LVV   87 (405)
Q Consensus        85 ~~v   87 (405)
                      +.+
T Consensus        76 ~r~   78 (104)
T 1wey_A           76 MKL   78 (104)
T ss_dssp             CEE
T ss_pred             eEE
Confidence            544

>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}

Probab=94.23  E-value=0.049  Score=43.23  Aligned_cols=72  Identities=15%  Similarity=0.334  Sum_probs=46.8

Q ss_pred             CCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCC-ccccEEEEEecchhhHHHHH-hccCCccccc
Q psy14559         10 KTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIP-VQSRICYVKFFDEKCVGISQ-HLTNTVFIDR   83 (405)
Q Consensus        10 ~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~-~~~g~aFV~F~~~e~A~~Al-~~~n~~~~~~   83 (405)
                      .+-.|.|+.|||++||+++.+.++..=++.-....+  .+.+.+ ..-.-|||.|.+.+++..-. ...+..|.|.
T Consensus         8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~--G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~   81 (97)
T 2l08_A            8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFA--ADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDS   81 (97)
T ss_dssp             CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCC--CCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECT
T ss_pred             cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeC--CccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeC
Confidence            356799999999999999888777765543222211  122221 12245999999999876654 4555666664

>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}

Probab=93.22  E-value=0.072  Score=42.27  Aligned_cols=68  Identities=10%  Similarity=0.220  Sum_probs=47.7

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEe-cc-C-C-CCCcEEEEEECCHHHHHHHHH-hCCceeCCe
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFC-TR-E-N-DTNKYALVEFSDQACVIPALK-LNGTNLKGK  233 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~-~~-~-~-~~rg~afV~F~~~e~A~~Al~-lng~~l~g~  233 (405)
                      .-+|.|..||+++||+++.+.++.+-++...... .+ + + ..-.-|||.|.+.+++..-.+ .+|..|-+.
T Consensus         9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~   81 (97)
T 2l08_A            9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDS   81 (97)
T ss_dssp             CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECT
T ss_pred             ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeC
Confidence            3479999999999999987777665444333222 12 1 1 112459999999999988887 999877543

>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}

Probab=88.89  E-value=0.61  Score=38.96  Aligned_cols=77  Identities=14%  Similarity=0.172  Sum_probs=50.8

Q ss_pred             EEEEcCCCCCCCHHHHHHHhccCCceEE-EEEeeccC---------CCCCC--ccccEEEEEecchhhHHHHHhccCCcc
Q psy14559         13 VVQVANIAPQATRDQMQTLFGYLGKVED-LRLYPIAR---------DVSIP--VQSRICYVKFFDEKCVGISQHLTNTVF   80 (405)
Q Consensus        13 tLfVgNLp~~vTeedLr~lFs~~G~I~~-v~i~~~~~---------d~~~~--~~~g~aFV~F~~~e~A~~Al~~~n~~~   80 (405)
                      -|.|=+.|+..+ ..+-+.|++||.|.+ +.. +...         ....+  ...++-.|.|.+..+|..||..++..+
T Consensus         9 ~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~-~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~ii   86 (132)
T 3p3d_A            9 AILVFGYPETMA-NQVIAYFQEFGTILEDFEV-LRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAVF   86 (132)
T ss_dssp             EEEEECCCGGGH-HHHHHHHGGGSCBCSCCGG-GCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCEE
T ss_pred             EEEEEecCHHHH-HHHHHHHHhhceEeeeccc-cccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeEe
Confidence            445556666554 456788999999877 211 1000         00001  146788999999999999999999988


Q ss_pred             ccceeEEeecC
Q psy14559         81 IDRALVVTPYN   91 (405)
Q Consensus        81 ~~~~~~vv~~~   91 (405)
                      -+.-+-|+++.
T Consensus        87 ~G~mIGV~Py~   97 (132)
T 3p3d_A           87 NGVLLGVIPYT   97 (132)
T ss_dssp             TTEECEEEECC
T ss_pred             CcEEEEEEECC
Confidence            77644566653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	405
d2f9da1	114	d.58.7.1 (A:12-125) Pre-mRNA branch site protein p	2e-07
d1uawa_	77	d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [Tax	2e-06
d1b7fa2	85	d.58.7.1 (A:205-289) Sex-lethal protein {Drosophil	2e-06
d2cpja1	86	d.58.7.1 (A:65-150) Non-POU domain-containing octa	4e-06
d2cq4a1	101	d.58.7.1 (A:132-232) RNA binding protein 23 {Human	4e-06
d2cpha1	94	d.58.7.1 (A:454-547) Probable RNA-binding protein	4e-06
d1x4ba1	103	d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucle	5e-06
d1l3ka1	84	d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RN	1e-05
d1h2vz_	93	d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding pro	1e-05
d1x0fa1	75	d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0	1e-05
d2cq3a1	93	d.58.7.1 (A:110-202) RNA-binding protein 9 {Human	2e-05
d2msta_	75	d.58.7.1 (A:) Neural RNA-binding protein Musashi-1	2e-05
d1cvja2	89	d.58.7.1 (A:91-179) Poly(A)-binding protein {Human	3e-05
d1hd0a_	75	d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprot	3e-05
d1wf2a_	98	d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprot	4e-05
d1x4ga1	96	d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo s	5e-05
d1x4aa1	95	d.58.7.1 (A:9-103) Splicing factor, arginine/serin	7e-05
d1fjca_	96	d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocrice	1e-04
d1weza_	102	d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprot	1e-04
d1x5ua1	93	d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Hu	1e-04
d1zh5a2	85	d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo	4e-04
d1weya_	104	d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus)	6e-04
U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]} Length = 104" target="_blank" href="http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?sid=d1jmta_">d1jmta_	104	d.58.7.3 (A:) 8e-04
d2ghpa3	86	d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splici	9e-04
d2cqca1	83	d.58.7.1 (A:109-191) Arginine/serine-rich splicing	0.001
d1u1qa_	183	d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1	0.001
d2adca1	109	d.58.7.1 (A:335-443) Polypyrimidine tract-binding	0.002
d1ufwa_	95	d.58.7.1 (A:) Synaptojanin 2 {Human (Homo sapiens)	0.002
d1u2fa_	90	d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit	0.003
d1p1ta_	104	d.58.7.1 (A:) Cleavage stimulation factor, 64 kda	0.004

>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]} Length = 114

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Pre-mRNA branch site protein p14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (111), Expect = 2e-07
 Identities = 22/110 (20%), Positives = 42/110 (38%), Gaps = 7/110 (6%)

Query: 164 EIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPAL 223
           E+ R L   N+   ++ +E+ D F K G +          +T   A V + D      A 
Sbjct: 5   EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQ-IRVGNTPETRGTAYVVYEDIFDAKNAC 63

Query: 224 K-LNGTNLKGKTLQMFHSTQSIQKPEAKSNEAAQREIEEAMSRVKEAQNM 272
             L+G N+  + L + +             +   ++ EE +  +KE   +
Sbjct: 64  DHLSGFNVCNRYLVVLYY-----NANRAFQKMDTKKKEEQLKLLKEKYGI 108

>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 77

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.4 bits (102), Expect = 2e-06
 Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 2/65 (3%)

Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCTRE--NDTNKYALVEFSDQACVIPALKLNGTNL 230
            +    + + L ++F + G V             +  +  V F DQA V   L  +   L
Sbjct: 7   GLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHEL 66

Query: 231 KGKTL 235
             KT+
Sbjct: 67  DSKTI 71

>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]} Length = 85

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

 Score = 43.4 bits (102), Expect = 2e-06
 Identities = 14/76 (18%), Positives = 31/76 (40%), Gaps = 4/76 (5%)

Query: 163 EEIRRTLVAI-NIEESVSPQELVDFFQKVGTVNYIRFCTRENDT--NKYALVEFSDQACV 219
           E I+ T + + N+  +++  +L   F K G++        +        A V ++ +   
Sbjct: 2   ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEA 61

Query: 220 IPALK-LNGTNLKGKT 234
             A+  LN    +G +
Sbjct: 62  QEAISALNNVIPEGGS 77

>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing octamer-binding protein, NonO {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Non-POU domain-containing octamer-binding protein, NonO
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.6 bits (100), Expect = 4e-06
 Identities = 14/79 (17%), Positives = 29/79 (36%), Gaps = 5/79 (6%)

Query: 166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK- 224
           R  L   N+   ++ +E+   F+K G    +           +  +    +     A   
Sbjct: 8   RSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD----KGFGFIRLETRTLAEIAKVE 63

Query: 225 LNGTNLKGKTLQMFHSTQS 243
           L+   L+GK L++  +  S
Sbjct: 64  LDNMPLRGKQLRVRFACHS 82

>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA binding protein 23
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (101), Expect = 4e-06
 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 2/81 (2%)

Query: 163 EEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDT--NKYALVEFSDQACVI 220
           E   RT+  + +   + P++L DFF  VG V  +R  +  N       A VEF +   V 
Sbjct: 15  ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVP 74

Query: 221 PALKLNGTNLKGKTLQMFHST 241
            A+ L G  L G  + +  S 
Sbjct: 75  LAIGLTGQRLLGVPIIVQASQ 95

>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.6 bits (100), Expect = 4e-06
 Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 5/75 (6%)

Query: 167 RTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNK---YALVEFSDQACVIPAL 223
             ++  NI    + +E+ + F   G +  +R   +   T     +  V+F  +     A 
Sbjct: 9   SKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAF 68

Query: 224 K--LNGTNLKGKTLQ 236
               + T+L G+ L 
Sbjct: 69  NALCHSTHLYGRRLV 83

>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins A2/B1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (100), Expect = 5e-06
 Identities = 13/78 (16%), Positives = 30/78 (38%), Gaps = 2/78 (2%)

Query: 160 KKIEEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNK--YALVEFSDQA 217
           K+ +E  R L    +    + + L +++++ G +                +  V FS  A
Sbjct: 14  KREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMA 73

Query: 218 CVIPALKLNGTNLKGKTL 235
            V  A+     ++ G+ +
Sbjct: 74  EVDAAMAARPHSIDGRVV 91

>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (96), Expect = 1e-05
 Identities = 11/79 (13%), Positives = 31/79 (39%), Gaps = 3/79 (3%)

Query: 160 KKIEEIRRTLVAINIEESVSPQELVDFFQKVG--TVNYIRFCTRENDTNKYALVEFSDQA 217
           K+ E++R+  +   +    + + L   F++ G  T   +        +  +  V ++   
Sbjct: 1   KEPEQLRKLFIG-GLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 59

Query: 218 CVIPALKLNGTNLKGKTLQ 236
            V  A+      + G+ ++
Sbjct: 60  EVDAAMNARPHKVDGRVVE 78

>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CBP20, 20KDa nuclear cap-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (97), Expect = 1e-05
 Identities = 16/80 (20%), Positives = 36/80 (45%), Gaps = 3/80 (3%)

Query: 160 KKIEEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTREND--TNKYALVEFSDQA 217
           +K+ +   TL   N+    + +++ + F K G +  I     +       +  VE+  +A
Sbjct: 1   EKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRA 60

Query: 218 CVIPALK-LNGTNLKGKTLQ 236
               A++ +NGT L  + ++
Sbjct: 61  DAENAMRYINGTRLDDRIIR 80

>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo sapiens) [TaxId: 9606]} Length = 75

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein D0 (AUF1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (95), Expect = 1e-05
 Identities = 7/66 (10%), Positives = 21/66 (31%), Gaps = 2/66 (3%)

Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCTREN--DTNKYALVEFSDQACVIPALKLNGTNL 230
            +      +++ ++F   G V  I             +  + F ++  V   ++    N+
Sbjct: 6   GLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNV 65

Query: 231 KGKTLQ 236
                +
Sbjct: 66  GLSKCE 71

>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (95), Expect = 2e-05
 Identities = 16/87 (18%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 167 RTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-L 225
           + L   NI       +L   F + G +  +     E  +  +  V F + A    A + L
Sbjct: 12  KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKL 71

Query: 226 NGTNLKGKTLQMFHSTQSIQKPEAKSN 252
           +GT ++G+ +++ ++          +N
Sbjct: 72  HGTVVEGRKIEVNNA-----TARVMTN 93

>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 75

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Neural RNA-binding protein Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.1 bits (93), Expect = 2e-05
 Identities = 7/66 (10%), Positives = 26/66 (39%), Gaps = 2/66 (3%)

Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCTRENDT--NKYALVEFSDQACVIPALKLNGTNL 230
            +  + + +++  +F++ G V+       +       +  V F  +  V    +++   +
Sbjct: 6   GLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEI 65

Query: 231 KGKTLQ 236
             K ++
Sbjct: 66  NNKMVE 71

>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (94), Expect = 3e-05
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 1/65 (1%)

Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLK 231
           N+++S+  + L D F   G +   +    EN +  Y  V F  Q     A++ +NG  L 
Sbjct: 15  NLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLN 74

Query: 232 GKTLQ 236
            + + 
Sbjct: 75  DRKVF 79

>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0 {Human (Homo sapiens) [TaxId: 9606]} Length = 75

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein d0
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (92), Expect = 3e-05
 Identities = 12/66 (18%), Positives = 21/66 (31%), Gaps = 2/66 (3%)

Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCTRENDT--NKYALVEFSDQACVIPALKLNGTNL 230
            +    + ++L D+F K G V                +  V F +   V   +      L
Sbjct: 6   GLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKL 65

Query: 231 KGKTLQ 236
            GK + 
Sbjct: 66  NGKVID 71

>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins C1/C2 {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins C1/C2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (94), Expect = 4e-05
 Identities = 10/61 (16%), Positives = 22/61 (36%), Gaps = 7/61 (11%)

Query: 176 ESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKT 234
             V   ++   F K G +              +A V++ ++     A+   +G  + G+ 
Sbjct: 26  LVVKKSDVEAIFSKYGKIVGCSVHKG------FAFVQYVNERNARAAVAGEDGRMIAGQV 79

Query: 235 L 235
           L
Sbjct: 80  L 80

>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (93), Expect = 5e-05
 Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 5/71 (7%)

Query: 167 RTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-L 225
            T+    I   ++ Q +   F   G +  IR          Y+ V FS       A+  +
Sbjct: 19  CTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE----KGYSFVRFSTHESAAHAIVSV 74

Query: 226 NGTNLKGKTLQ 236
           NGT ++G  ++
Sbjct: 75  NGTTIEGHVVK 85

>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (91), Expect = 7e-05
 Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 2/65 (3%)

Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLK 231
           N+   +  +++ D F K G +  I           +A VEF D      A+   +G +  
Sbjct: 21  NLPPDIRTKDIEDVFYKYGAIRDI-DLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYD 79

Query: 232 GKTLQ 236
           G  L+
Sbjct: 80  GYRLR 84

>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]} Length = 96

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

 Score = 38.9 bits (90), Expect = 1e-04
 Identities = 19/85 (22%), Positives = 43/85 (50%), Gaps = 5/85 (5%)

Query: 158 DTKKIEEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQA 217
            +KK+    RTL+A N+  +++  EL + F+       IR  +++  +   A +EF  +A
Sbjct: 9   TSKKVRA-ARTLLAKNLSFNITEDELKEVFED---ALEIRLVSQDGKSKGIAYIEFKSEA 64

Query: 218 CVIPALK-LNGTNLKGKTLQMFHST 241
                L+   G  + G+++ ++++ 
Sbjct: 65  DAEKNLEEKQGAEIDGRSVSLYYTG 89

>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (90), Expect = 1e-04
 Identities = 9/69 (13%), Positives = 29/69 (42%)

Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALKLNGTNLKG 232
            +    +  ++ +FF  +  +        +      A VEF+     + A+  +  N++ 
Sbjct: 22  GLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQH 81

Query: 233 KTLQMFHST 241
           + +++F ++
Sbjct: 82  RYVELFLNS 90

>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (89), Expect = 1e-04
 Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 3/73 (4%)

Query: 167 RTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKY--ALVEFSDQACVIPALK 224
            T+    ++E VS   L + F + G V                   VEF  +     A+K
Sbjct: 10  ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK 69

Query: 225 -LNGTNLKGKTLQ 236
            ++   L GK ++
Sbjct: 70  IMDMIKLYGKPIR 82

>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Lupus LA protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (85), Expect = 4e-04
 Identities = 11/76 (14%), Positives = 22/76 (28%), Gaps = 1/76 (1%)

Query: 161 KIEEIRRTLVAINIEESVSPQELVDFFQKVGTV-NYIRFCTRENDTNKYALVEFSDQACV 219
           K +   R++         +  ++ ++ +  G V N     T          V F      
Sbjct: 1   KNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESA 60

Query: 220 IPALKLNGTNLKGKTL 235
              ++  G   K   L
Sbjct: 61  KKFVETPGQKYKETDL 76

>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 104

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Calcipressin-1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.1 bits (85), Expect = 6e-04
 Identities = 11/79 (13%), Positives = 26/79 (32%), Gaps = 10/79 (12%)

Query: 168 TLVAINIEESV-----SPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPA 222
            L+A    + V     +  +    F+        ++            + FS+      A
Sbjct: 7   GLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK----RVRINFSNPLSAADA 62

Query: 223 LK-LNGTNLKGKTLQMFHS 240
              L+ T   GK ++++ +
Sbjct: 63  RLRLHKTEFLGKEMKLYFA 81

>d1jmta_ d.58.7.3 (A:) U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Splicing factor U2AF subunits
domain: U2AF35 (35 KDa subunit)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (84), Expect = 8e-04
 Identities = 11/66 (16%), Positives = 21/66 (31%), Gaps = 2/66 (3%)

Query: 173 NIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNK-YALVEFSDQACVIPALK-LNGTNL 230
              +    +   +  +K G V  +  C    D       V+F  +     A+  LN    
Sbjct: 34  EHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWF 93

Query: 231 KGKTLQ 236
            G+ + 
Sbjct: 94  NGQPIH 99

>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.9 bits (82), Expect = 9e-04
 Identities = 13/75 (17%), Positives = 32/75 (42%), Gaps = 4/75 (5%)

Query: 166 RRTLVAINI-EESVSPQELVDFFQKVGTVNYIRFCTRENDTNK---YALVEFSDQACVIP 221
            R ++  N+  E +    L + F+  G++  I     + + +     A + F ++     
Sbjct: 4   GREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAER 63

Query: 222 ALKLNGTNLKGKTLQ 236
           AL++N + L  + + 
Sbjct: 64  ALQMNRSLLGNREIS 78

>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor 10 {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Arginine/serine-rich splicing factor 10
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (82), Expect = 0.001
 Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 3/72 (4%)

Query: 167 RTLVAINIEESVSPQELVDFFQKVGTV--NYIRFCTRENDTNKYALVEFSDQACVIPALK 224
             L    +    + ++L + F K G +    I +  +   +  +A V F +      A +
Sbjct: 10  CCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKE 69

Query: 225 -LNGTNLKGKTL 235
             NG  L G+ +
Sbjct: 70  RANGMELDGRRI 81

>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 0.001
 Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 5/87 (5%)

Query: 167 RTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNK--YALVEFSDQACVIPALK 224
           + +    I+E      L D+F++ G +  I   T      K  +A V F D   V   + 
Sbjct: 98  KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 157

Query: 225 LNGTNLKGKTLQMFHSTQSIQKPEAKS 251
                + G   ++    +++ K E  S
Sbjct: 158 QKYHTVNGHNCEV---RKALSKQEMAS 181

>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (82), Expect = 0.002
 Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 6/90 (6%)

Query: 167 RTLVAINI-EESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK- 224
             L+  N+  E V+PQ L   F   G V  ++      +  + ALV+ +D      A+  
Sbjct: 3   SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKIL---FNKKENALVQMADGNQAQLAMSH 59

Query: 225 LNGTNLKGKTLQ-MFHSTQSIQKPEAKSNE 253
           LNG  L GK ++      Q++Q P     +
Sbjct: 60  LNGHKLHGKPIRITLSKHQNVQLPREGQED 89

>d1ufwa_ d.58.7.1 (A:) Synaptojanin 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Synaptojanin 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (81), Expect = 0.002
 Identities = 15/78 (19%), Positives = 31/78 (39%), Gaps = 16/78 (20%)

Query: 170 VAINIEESVSPQ----------ELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACV 219
           V +N++     +          EL+      GT+  +R            LV F+D    
Sbjct: 18  VVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRIN---QGQ---MLVTFADSHSA 71

Query: 220 IPALKLNGTNLKGKTLQM 237
           +  L ++G  +KG+ +++
Sbjct: 72  LSVLDVDGMKVKGRAVKI 89

>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.7 bits (79), Expect = 0.003
 Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 7/76 (9%)

Query: 167 RTLVAINIEESVSPQELVDFFQKVGTVNYIRF----CTRENDTNK---YALVEFSDQACV 219
           R L   NI   ++ + ++DFF     +  +             N+   +A +EF      
Sbjct: 2   RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDET 61

Query: 220 IPALKLNGTNLKGKTL 235
             A+  +G   +G++L
Sbjct: 62  TQAMAFDGIIFQGQSL 77

>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cleavage stimulation factor, 64 kda subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.3 bits (78), Expect = 0.004
 Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 3/94 (3%)

Query: 161 KIEEIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKY--ALVEFSDQAC 218
            ++   R++   NI    + ++L D F +VG V   R                E+ DQ  
Sbjct: 3   AVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQET 62

Query: 219 VIPALK-LNGTNLKGKTLQMFHSTQSIQKPEAKS 251
            + A++ LNG    G+ L++ ++     K E KS
Sbjct: 63  ALSAMRNLNGREFSGRALRVDNAASEKNKEELKS 96

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	405
d1u1qa_	183	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	99.96
d1l3ka1	84	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	99.79
d2cq4a1	101	RNA binding protein 23 {Human (Homo sapiens) [TaxI	99.78
d1b7fa1	82	Sex-lethal protein {Drosophila melanogaster [TaxId	99.77
d1fxla1	82	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	99.77
d2cqba1	89	Peptidyl-prolyl cis-trans isomerase E, N-terminal	99.77
d1cvja1	80	Poly(A)-binding protein {Human (Homo sapiens) [Tax	99.77
d1l3ka2	79	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	99.77
d1no8a_	78	Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 1	99.76
d2cqia1	90	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	99.76
d1hd0a_	75	Heterogeneous nuclear ribonucleoprotein d0 {Human	99.76
d1h2vz_	93	CBP20, 20KDa nuclear cap-binding protein {Human (H	99.76
d1uawa_	77	Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}	99.76
d2cq3a1	93	RNA-binding protein 9 {Human (Homo sapiens) [TaxId	99.76
d1u6fa1	139	RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId	99.76
d1x5ua1	93	Splicing factor 3B subunit 4 {Human (Homo sapiens)	99.76
d1cvja2	89	Poly(A)-binding protein {Human (Homo sapiens) [Tax	99.75
d1x4ba1	103	Heterogeneous nuclear ribonucleoproteins A2/B1 {Hu	99.75
d1rk8a_	88	RNA-binding protein 8 {Fruit fly (Drosophila melan	99.75
d1whwa_	99	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	99.75
d2cqca1	83	Arginine/serine-rich splicing factor 10 {Human (Ho	99.75
d2cq0a1	90	Eukaryotic translation initiation factor 3 subunit	99.75
d2ghpa2	75	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	99.75
d2cpha1	94	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	99.74
d2u2fa_	85	Splicing factor U2AF 65 KDa subunit {Human (Homo s	99.74
d1zh5a2	85	Lupus LA protein {Human (Homo sapiens) [TaxId: 960	99.74
d2ghpa1	81	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	99.74
d1x0fa1	75	Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo s	99.74
d2ghpa3	86	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	99.74
d1x5sa1	90	Cold-inducible RNA-binding protein {Human (Homo sa	99.74
d1fxla2	85	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	99.73
d2cqda1	103	RNA-binding region containing protein 1 {Human (Ho	99.73
d1b7fa2	85	Sex-lethal protein {Drosophila melanogaster [TaxId	99.73
d2msta_	75	Neural RNA-binding protein Musashi-1 {Mouse (Mus m	99.73
d2cqga1	90	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	99.72
d2f9da1	114	Pre-mRNA branch site protein p14 {Human (Homo sapi	99.72
d1p1ta_	104	Cleavage stimulation factor, 64 kda subunit {Human	99.72
d2cpza1	102	CUG triplet repeat RNA-binding protein 1 {Human (H	99.72
d1fjeb1	91	Nucleolin {Golden hamster (Mesocricetus auratus) [	99.72
d2cpfa1	85	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	99.71
d1x5ta1	83	Splicing factor 3B subunit 4 {Human (Homo sapiens)	99.71
d1whxa_	111	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	99.69
d1wi8a_	104	Eukaryotic translation initiation factor 4B {Human	99.69
d1x5oa1	101	RNA-binding motif, single-stranded-interacting pro	99.69
d1x4ha1	98	RNA-binding protein 28 {Mouse (Mus musculus) [TaxI	99.69
d1x4aa1	95	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	99.68
d1x4ga1	96	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	99.67
d1wf0a_	88	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	99.67
d1fjca_	96	Nucleolin {Golden hamster (Mesocricetus auratus) [	99.67
d2cpea1	101	RNA-binding protein EWS {Human (Homo sapiens) [Tax	99.67
d2cpda1	86	APOBEC1 stimulating protein {Human (Homo sapiens)	99.66
d2cpja1	86	Non-POU domain-containing octamer-binding protein,	99.66
d2b0ga1	83	Splicesomal U1A protein {Drosophila melanogaster [	99.66
d2cpia1	89	E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musc	99.66
d2adca2	88	Polypyrimidine tract-binding protein {Human (Homo	99.66
d2cqha1	80	IGF-II mRNA-binding protein 2 isoform A {Human (Ho	99.65
d1wf2a_	98	Heterogeneous nuclear ribonucleoproteins C1/C2 {Hu	99.65
d2cpxa1	102	RNA-binding protein 41, RBM41 {Human (Homo sapiens	99.65
d1l3ka1	84	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	99.65
d2cpya1	103	RNA-binding protein 12 {Human (Homo sapiens) [TaxI	99.64
d3begb1	87	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	99.64
d1x4ea1	72	RNA-binding motif, single-stranded-interacting pro	99.64
d2bz2a1	79	Negative elongation factor E, NELF-E {Human (Homo	99.64
d2adca1	109	Polypyrimidine tract-binding protein {Human (Homo	99.64
d2cqda1	103	RNA-binding region containing protein 1 {Human (Ho	99.64
d1h2vz_	93	CBP20, 20KDa nuclear cap-binding protein {Human (H	99.64
d1wg5a_	104	Heterogeneous nuclear ribonucleoprotein H' {Human	99.64
d2cqca1	83	Arginine/serine-rich splicing factor 10 {Human (Ho	99.64
d1wi6a1	75	Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (M	99.64
d1wg1a_	88	Probable RNA-binding protein KIAA1579 {Human (Homo	99.63
d1cvja1	80	Poly(A)-binding protein {Human (Homo sapiens) [Tax	99.63
d1weza_	102	Heterogeneous nuclear ribonucleoprotein H' {Human	99.63
d1nu4a_	91	Splicesomal U1A protein {Human (Homo sapiens) [Tax	99.63
d1uawa_	77	Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}	99.63
d1b7fa1	82	Sex-lethal protein {Drosophila melanogaster [TaxId	99.62
d1hd0a_	75	Heterogeneous nuclear ribonucleoprotein d0 {Human	99.62
d1x5ua1	93	Splicing factor 3B subunit 4 {Human (Homo sapiens)	99.62
d2cqpa1	86	RNA-binding protein 12 {Mouse (Mus musculus) [TaxI	99.62
d1wg4a_	98	Splicing factor, arginine/serine-rich 9 (SFRS9) {M	99.62
d2cqga1	90	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	99.62
d2disa1	96	Hypothetical protein FLJ20273 {Human (Homo sapiens	99.62
d2cqba1	89	Peptidyl-prolyl cis-trans isomerase E, N-terminal	99.62
d2cq4a1	101	RNA binding protein 23 {Human (Homo sapiens) [TaxI	99.62
d1whwa_	99	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	99.61
d1l3ka2	79	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	99.61
d2u2fa_	85	Splicing factor U2AF 65 KDa subunit {Human (Homo s	99.61
d1zh5a2	85	Lupus LA protein {Human (Homo sapiens) [TaxId: 960	99.61
d1rk8a_	88	RNA-binding protein 8 {Fruit fly (Drosophila melan	99.61
d1x0fa1	75	Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo s	99.61
d2cpfa1	85	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	99.6
d2cq1a1	88	Polypyrimidine tract-binding protein 2, PTBP2 {Hum	99.6
d2cpha1	94	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	99.6
d2ghpa1	81	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	99.6
d2cq0a1	90	Eukaryotic translation initiation factor 3 subunit	99.6
d1fxla1	82	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	99.6
d1u2fa_	90	Splicing factor U2AF 65 KDa subunit {Human (Homo s	99.59
d1wela1	112	RNA-binding protein 12 {Human (Homo sapiens) [TaxI	99.59
d2cqia1	90	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	99.59
d2ghpa2	75	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	99.59
d1x4ba1	103	Heterogeneous nuclear ribonucleoproteins A2/B1 {Hu	99.59
d1whya_	97	Putative RNA-binding protein 15B, Rbm15b {Mouse (M	99.58
d2cq3a1	93	RNA-binding protein 9 {Human (Homo sapiens) [TaxId	99.58
d1fxla2	85	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	99.58
d1no8a_	78	Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 1	99.58
d1p1ta_	104	Cleavage stimulation factor, 64 kda subunit {Human	99.58
d2f9da1	114	Pre-mRNA branch site protein p14 {Human (Homo sapi	99.58
d2ghpa3	86	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	99.58
d1cvja2	89	Poly(A)-binding protein {Human (Homo sapiens) [Tax	99.57
d2adba1	108	Polypyrimidine tract-binding protein {Human (Homo	99.57
d2cpza1	102	CUG triplet repeat RNA-binding protein 1 {Human (H	99.57
d1b7fa2	85	Sex-lethal protein {Drosophila melanogaster [TaxId	99.57
d1u1qa_	183	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	99.57
d1wexa_	104	Heterogeneous nuclear ribonucleoprotein L-like {Mo	99.57
d1x4fa1	99	Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}	99.56
d1u6fa1	139	RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId	99.56
d1x5sa1	90	Cold-inducible RNA-binding protein {Human (Homo sa	99.55
d1x5ta1	83	Splicing factor 3B subunit 4 {Human (Homo sapiens)	99.55
d2msta_	75	Neural RNA-binding protein Musashi-1 {Mouse (Mus m	99.54
d1whxa_	111	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	99.54
d1x4da1	89	Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}	99.54
d1x4aa1	95	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	99.54
d2b0ga1	83	Splicesomal U1A protein {Drosophila melanogaster [	99.54
d1x4ha1	98	RNA-binding protein 28 {Mouse (Mus musculus) [TaxI	99.53
d1fjeb1	91	Nucleolin {Golden hamster (Mesocricetus auratus) [	99.53
d1x5oa1	101	RNA-binding motif, single-stranded-interacting pro	99.52
d1x4ga1	96	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	99.52
d1wi8a_	104	Eukaryotic translation initiation factor 4B {Human	99.51
d1wg5a_	104	Heterogeneous nuclear ribonucleoprotein H' {Human	99.51
d1wf0a_	88	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	99.51
d2cpda1	86	APOBEC1 stimulating protein {Human (Homo sapiens)	99.5
d1x4ea1	72	RNA-binding motif, single-stranded-interacting pro	99.5
d2bz2a1	79	Negative elongation factor E, NELF-E {Human (Homo	99.5
d2cpea1	101	RNA-binding protein EWS {Human (Homo sapiens) [Tax	99.49
d2adca2	88	Polypyrimidine tract-binding protein {Human (Homo	99.49
d2cpja1	86	Non-POU domain-containing octamer-binding protein,	99.49
d1fjca_	96	Nucleolin {Golden hamster (Mesocricetus auratus) [	99.49
d2disa1	96	Hypothetical protein FLJ20273 {Human (Homo sapiens	99.48
d2cpia1	89	E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musc	99.47
d2adca1	109	Polypyrimidine tract-binding protein {Human (Homo	99.47
d1weza_	102	Heterogeneous nuclear ribonucleoprotein H' {Human	99.47
d2cpxa1	102	RNA-binding protein 41, RBM41 {Human (Homo sapiens	99.46
d2cqpa1	86	RNA-binding protein 12 {Mouse (Mus musculus) [TaxI	99.46
d2cpya1	103	RNA-binding protein 12 {Human (Homo sapiens) [TaxI	99.46
d1wg1a_	88	Probable RNA-binding protein KIAA1579 {Human (Homo	99.45
d1nu4a_	91	Splicesomal U1A protein {Human (Homo sapiens) [Tax	99.45
d1weya_	104	Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090	99.45
d2cq1a1	88	Polypyrimidine tract-binding protein 2, PTBP2 {Hum	99.45
d1wf2a_	98	Heterogeneous nuclear ribonucleoproteins C1/C2 {Hu	99.45
d1whya_	97	Putative RNA-binding protein 15B, Rbm15b {Mouse (M	99.43
d2cqha1	80	IGF-II mRNA-binding protein 2 isoform A {Human (Ho	99.43
d1wwha1	81	Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090	99.43
d2adba1	108	Polypyrimidine tract-binding protein {Human (Homo	99.43
U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}" target="_blank" href="http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?sid=d1jmta_">d1jmta_	104	U2	99.42
d1wexa_	104	Heterogeneous nuclear ribonucleoprotein L-like {Mo	99.42
d1wela1	112	RNA-binding protein 12 {Human (Homo sapiens) [TaxI	99.42
d1wi6a1	75	Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (M	99.41
d1u2fa_	90	Splicing factor U2AF 65 KDa subunit {Human (Homo s	99.41
d3begb1	87	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	99.4
d1wg4a_	98	Splicing factor, arginine/serine-rich 9 (SFRS9) {M	99.37
d1owxa_	113	Lupus LA protein {Human (Homo sapiens) [TaxId: 960	99.37
d2cq2a1	101	Alkylation repair AlkB homolog 8, ALKBH8 {Human (H	99.36
d1x4fa1	99	Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}	99.32
d1x4da1	89	Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}	99.32
d1weya_	104	Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090	99.27
d2cq2a1	101	Alkylation repair AlkB homolog 8, ALKBH8 {Human (H	99.26
d1wwha1	81	Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090	99.25
d2dita1	99	HIV Tat-specific factor 1 {Human (Homo sapiens) [T	99.24
d1owxa_	113	Lupus LA protein {Human (Homo sapiens) [TaxId: 960	99.2
d1o0pa_	104	Splicing factor U2AF 65 KDa subunit {Human (Homo s	99.1
U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}" target="_blank" href="http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?sid=d1jmta_">d1jmta_	104	U2	99.08
d2dita1	99	HIV Tat-specific factor 1 {Human (Homo sapiens) [T	99.02
d1o0pa_	104	Splicing factor U2AF 65 KDa subunit {Human (Homo s	98.98
d1ufwa_	95	Synaptojanin 2 {Human (Homo sapiens) [TaxId: 9606]	97.15
d1uw4a_	91	RNA processing protein UPF3x, RRM domain {Human (H	96.51
d2dgxa1	73	Limkain-b1, LKAP {Human (Homo sapiens) [TaxId: 960	96.48
d1uw4a_	91	RNA processing protein UPF3x, RRM domain {Human (H	96.19
d1ufwa_	95	Synaptojanin 2 {Human (Homo sapiens) [TaxId: 9606]	93.96
d2dgxa1	73	Limkain-b1, LKAP {Human (Homo sapiens) [TaxId: 960	90.45
d1whva_	100	Poly(A)-specific ribonuclease PARN {Mouse (Mus mus	90.11
d1whva_	100	Poly(A)-specific ribonuclease PARN {Mouse (Mus mus	88.28

>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.4e-29  Score=224.33  Aligned_cols=168  Identities=14%  Similarity=0.204  Sum_probs=138.3

Q ss_pred             CCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEee
Q psy14559         10 KTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTP   89 (405)
Q Consensus        10 ~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~   89 (405)
                      ..++|||+|||+.+|+++|+++|++||+|.++.+. .  +..++.++|||||+|.+.++|..|+...+..+..+.+.+..
T Consensus         5 ~~r~lfV~nLp~~~te~~L~~~F~~~G~v~~~~~~-~--~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~   81 (183)
T d1u1qa_           5 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVM-R--DPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKR   81 (183)
T ss_dssp             HHHEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEE-E--CTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEE
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHcCCEEEEEee-e--cccCCCccCceecccCCHHHHHHHHHhcCCcccccchhhhh
Confidence            45899999999999999999999999999999993 3  33578899999999999999999998877666555554443


Q ss_pred             cCCCCCchHHHHHHHHhccCCCCCCCCCCCCcccccccCCCCCcccccCCcccccCCCCCCCCCCCCCCCccccccCcEE
Q psy14559         90 YNSGEIPDEQRALEIAAQQQGPNSGEPKLPAHVTNQIEGVPPNQVISTHDPVLVQHGLPQYPPLPITYDTKKIEEIRRTL  169 (405)
Q Consensus        90 ~~~~~~~~e~ka~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~~~~~~~~~~rtv  169 (405)
                      ......                                                ..             ........++|
T Consensus        82 ~~~~~~------------------------------------------------~~-------------~~~~~~~~~~i  100 (183)
T d1u1qa_          82 AVSRED------------------------------------------------SQ-------------RPGAHLTVKKI  100 (183)
T ss_dssp             CCCTTG------------------------------------------------GG-------------STTTTCCCSEE
T ss_pred             hhhccc------------------------------------------------cc-------------cccccccccee
Confidence            221100                                                00             00001126799


Q ss_pred             EEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeecc
Q psy14559        170 VAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHST  241 (405)
Q Consensus       170 fV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~  241 (405)
                      ||+|||+.+|+++|+++|+.||.|..+.++.+  ++.++|||||+|.+.++|.+|+.+++..+.|++|+|.+|.
T Consensus       101 ~V~~lp~~~te~~L~~~f~~~G~v~~~~i~~~~~~~~~~g~~fV~f~~~e~A~~Al~~~~~~~~G~~i~V~~A~  174 (183)
T d1u1qa_         101 FVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL  174 (183)
T ss_dssp             EEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHTSSCEEETTEEEEEEECC
T ss_pred             EEccCCCcCCHHHHhhhhccCCceeeeeeecccccCccceeEEEEECCHHHHHHHHHhCCCeECCEEEEEEecC
Confidence            99999999999999999999999999999765  5788999999999999999999999999999999999875

>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=3e-19  Score=139.33  Aligned_cols=76  Identities=13%  Similarity=0.207  Sum_probs=72.0

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeecc
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHST  241 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~  241 (405)
                      .++|||+|||+++|+++|+++|++||.|.+++++.+  +|.++|||||+|.+.++|++|+.++|+.|.|+.|+|..|.
T Consensus         6 ~~~lfV~nlp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~a~~ai~~~~~~i~Gr~i~V~~A~   83 (84)
T d1l3ka1           6 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAV   83 (84)
T ss_dssp             GGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEECC
T ss_pred             CcEEEEECCCCCCCHHHHHHHHHhhccccceeecccccCCCcccEEEEEEcCHHHHHHHHHhCCCEECCEEEEEEeee
Confidence            579999999999999999999999999999999765  6889999999999999999999999999999999999875

>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA binding protein 23
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=2.6e-19  Score=144.60  Aligned_cols=77  Identities=29%  Similarity=0.461  Sum_probs=72.7

Q ss_pred             cCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeecc
Q psy14559        165 IRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHST  241 (405)
Q Consensus       165 ~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~  241 (405)
                      ..+||||+|||+++++++|+++|++||+|.+|+++.+  +|+++|||||+|.+.++|.+|+.|||..|.|++|.|++++
T Consensus        17 ~~~tifV~nL~~~~te~~l~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~a~~A~~l~g~~~~G~~l~V~~a~   95 (101)
T d2cq4a1          17 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQ   95 (101)
T ss_dssp             HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEHH
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHcCCCeEEEEEeeecCCCccccceEEEEECCHHHHHHHHHHCCCEECCEEEEEEECC
Confidence            3689999999999999999999999999999999865  6889999999999999999999999999999999999875

>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.77  E-value=5e-19  Score=137.07  Aligned_cols=76  Identities=24%  Similarity=0.430  Sum_probs=71.6

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST  241 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~  241 (405)
                      .++|||+|||+++|+++|+++|++||.|.+++++.+  ++.++|||||+|.+.++|++|++ |||..+.|++|+|++|+
T Consensus         2 ~t~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~ai~~lng~~~~g~~l~v~~a~   80 (82)
T d1b7fa1           2 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR   80 (82)
T ss_dssp             CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeeeeecccCCccccceEEECCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence            468999999999999999999999999999998754  67899999999999999999998 99999999999999986

>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1e-18  Score=135.22  Aligned_cols=76  Identities=18%  Similarity=0.387  Sum_probs=71.6

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST  241 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~  241 (405)
                      +.+|||+|||+++++++|+++|++||.|.+|+++.+  .+.++|||||+|.+.++|+.|++ |||..++|++|+|.+++
T Consensus         2 ~t~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~Ak   80 (82)
T d1fxla1           2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR   80 (82)
T ss_dssp             CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHhCCcccccceeeccCCCceeeEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence            568999999999999999999999999999999765  66889999999999999999998 99999999999999986

>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Peptidyl-prolyl cis-trans isomerase E, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=4.9e-19  Score=139.46  Aligned_cols=76  Identities=22%  Similarity=0.324  Sum_probs=72.4

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST  241 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~  241 (405)
                      .+||||+|||+++|+++|+++|++||+|.+|.++.+  ++.++|||||+|.+.++|+.|+. |||..++|++|+|.+++
T Consensus         5 ~~tlfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~~~~~kg~afV~f~~~~~A~~ai~~l~~~~i~g~~l~v~~a~   83 (89)
T d2cqba1           5 KRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK   83 (89)
T ss_dssp             CSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred             CcEEEEeCCCCcCCHHHHHHHHhhCCeEEecccccccccccccceeEEEECCHHHHHHHHHHcCCCEECCEEEEEEEeC
Confidence            689999999999999999999999999999999765  67899999999999999999998 99999999999999986

>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=7.6e-19  Score=135.58  Aligned_cols=74  Identities=27%  Similarity=0.395  Sum_probs=70.5

Q ss_pred             EEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559        168 TLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST  241 (405)
Q Consensus       168 tvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~  241 (405)
                      +|||+|||+++|+++|+++|++||+|.+++++.+  ++.++|||||+|.+.++|..|++ |||..+.|++|+|++++
T Consensus         2 slfV~nL~~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~aFV~f~~~~~a~~ai~~l~g~~~~gr~i~v~~a~   78 (80)
T d1cvja1           2 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ   78 (80)
T ss_dssp             EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHTTSTTCEETTEECEEEECC
T ss_pred             EEEEeCCCCcCCHHHHHHHHHHhCCEeEEEEEecccccCCCCceEEEECCHHHHHHHHHHcCCCEECCEEEEEEEeC
Confidence            6999999999999999999999999999999865  67889999999999999999998 99999999999999986

>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=9.1e-19  Score=134.58  Aligned_cols=75  Identities=19%  Similarity=0.347  Sum_probs=70.2

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeec
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHS  240 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a  240 (405)
                      -++|||+|||+++|+++|+++|++||.|..+.++.+  ++.++|||||+|.+.+++.+|+.+||+.|+|++|+|+.|
T Consensus         2 ~r~lfV~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~~~~al~~~~~~l~Gr~i~V~~A   78 (79)
T d1l3ka2           2 VKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA   78 (79)
T ss_dssp             CSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEEEC
T ss_pred             CCEEEECCCCCcCCHHHHHHHHHHhccccccccccCCCCcccccEEEEEEcCHHHHHHHHHhCCCEECCEEEEEEEC
Confidence            478999999999999999999999999999999765  667899999999999999999999999999999999875

>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear factor Aly
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.76  E-value=1.3e-18  Score=133.64  Aligned_cols=74  Identities=24%  Similarity=0.357  Sum_probs=70.3

Q ss_pred             EEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559        168 TLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST  241 (405)
Q Consensus       168 tvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~  241 (405)
                      +|||+|||+++++++|+++|++||.|.++++..+ +++++|||||+|.+.++|..|++ |||..++|++|+|+.+.
T Consensus         2 rl~V~nLp~~~~~~~l~~~F~~~G~v~~~~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~l~V~~a~   77 (78)
T d1no8a_           2 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT   77 (78)
T ss_dssp             EEEEESCCTTCCHHHHHHHHHHHSCEEEEEESCSSCCCSCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred             EEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeeccccceeEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence            5999999999999999999999999999999765 78899999999999999999998 99999999999999875

>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=2.3e-18  Score=135.83  Aligned_cols=76  Identities=25%  Similarity=0.452  Sum_probs=72.4

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST  241 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~  241 (405)
                      .+||||+|||+++|+++|+++|++||+|.+|+++.+....+|||||+|.+.++|..|+. |||..+.|++|+|.+++
T Consensus         8 ~~tl~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a~   84 (90)
T d2cqia1           8 PRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT   84 (90)
T ss_dssp             CCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHhcCCceeeeeecccCccceeeEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcC
Confidence            67999999999999999999999999999999988766679999999999999999998 99999999999999987

>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein d0
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=7.1e-19  Score=134.13  Aligned_cols=73  Identities=16%  Similarity=0.279  Sum_probs=68.5

Q ss_pred             EEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeec
Q psy14559        168 TLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHS  240 (405)
Q Consensus       168 tvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a  240 (405)
                      +|||+|||+++|+++|+++|++||+|.++.++.+  +++++|||||+|.+.++|++|+++++..|+|+.|.|..|
T Consensus         1 klfV~nl~~~~te~~l~~~F~~~G~i~~~~i~~d~~t~~~kg~afV~f~~~~~a~~Al~~~~~~l~Gr~i~V~rA   75 (75)
T d1hd0a_           1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA   75 (75)
T ss_dssp             CEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCBTTTTBCCSEEEEEESSHHHHHHHHHTCCCCBTTBCCEECCC
T ss_pred             CEEEeCCCCcCCHHHHHHHHHhhccccccccccCCCCCCcCceEEEEECCHHHHHHHHhcCCCEECCCEEEeeEC
Confidence            4899999999999999999999999999999765  678999999999999999999999999999999999764

>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CBP20, 20KDa nuclear cap-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.8e-18  Score=137.38  Aligned_cols=76  Identities=20%  Similarity=0.322  Sum_probs=72.2

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST  241 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~  241 (405)
                      .+||||+|||+++|+++|+++|++||+|.+|.++.+  ++.++|||||+|.+.++|..|++ |||..+.|++|+|+++.
T Consensus         7 s~tlfV~nlp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~gr~i~V~~a~   85 (93)
T d1h2vz_           7 SCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDA   85 (93)
T ss_dssp             CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEES
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHCCcceeccccccccccccceEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence            689999999999999999999999999999999765  67789999999999999999998 99999999999999986

>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.76  E-value=3.1e-19  Score=136.97  Aligned_cols=74  Identities=19%  Similarity=0.238  Sum_probs=69.9

Q ss_pred             cEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeec
Q psy14559        167 RTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHS  240 (405)
Q Consensus       167 rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a  240 (405)
                      ++|||+|||+++|+++|+++|++||.|.+++++.+  +++++|||||+|.+.++|.+|+.+|++.++|++|+|+.|
T Consensus         1 cklfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~kG~aFV~f~~~~~a~~al~~~~~~i~Gr~i~V~~A   76 (77)
T d1uawa_           1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA   76 (77)
T ss_dssp             CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred             CEEEEeCCCCcCCHHHHHHHHHHhCCcceeeeecccCCCCccceEEEEECCHHHHHHHHHcCCCEECCeEEEEEEC
Confidence            47999999999999999999999999999999776  588999999999999999999999999999999999875

>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=3.5e-18  Score=135.61  Aligned_cols=77  Identities=21%  Similarity=0.340  Sum_probs=73.3

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~  242 (405)
                      .++|||+|||+++++++|+++|++||+|.+|+++.+.+.++|||||+|.+.++|.+|+. |||..++|++|+|++++.
T Consensus        11 ~~~l~v~nLp~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~kg~afV~f~~~~~a~~Ai~~l~~~~~~g~~l~V~~A~~   88 (93)
T d2cq3a1          11 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA   88 (93)
T ss_dssp             CCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCS
T ss_pred             CCEEEEECCCCCCCHHHHHHHHhhcceeeeccccccccCCcceeEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCc
Confidence            67899999999999999999999999999999988877789999999999999999998 999999999999999874

>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein UBP1
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.76  E-value=5e-18  Score=144.51  Aligned_cols=84  Identities=23%  Similarity=0.447  Sum_probs=75.8

Q ss_pred             ccCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q psy14559        164 EIRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHS  240 (405)
Q Consensus       164 ~~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a  240 (405)
                      ...++|||+|||+++|+++|+++|++||.|.+|+++.+  ++.++|||||+|.+.++|..|++ |||..|.|++|+|.++
T Consensus        40 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~t~~~rg~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a  119 (139)
T d1u6fa1          40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA  119 (139)
T ss_dssp             TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhhccccccccccccccccccceeeEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence            34679999999999999999999999999999999765  67899999999999999999998 9999999999999999


Q ss_pred             cCCCCCC
Q psy14559        241 TQSIQKP  247 (405)
Q Consensus       241 ~~~~~~p  247 (405)
                      +....+|
T Consensus       120 ~~~~~~p  126 (139)
T d1u6fa1         120 ASGHQRP  126 (139)
T ss_dssp             SCCCCCC
T ss_pred             CCCCCCC
Confidence            7554333

>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.5e-18  Score=137.92  Aligned_cols=77  Identities=22%  Similarity=0.305  Sum_probs=72.7

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~  242 (405)
                      .++|||+|||+++|+++|+++|++||.|.+++++.+  ++.++|||||+|.+.++|++|++ |||..++|++|+|++|+.
T Consensus         9 ~~tlfV~nLp~~~t~~~l~~~F~~~G~v~~v~~~~d~~tg~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~A~~   88 (93)
T d1x5ua1           9 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASA   88 (93)
T ss_dssp             TTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETTT
T ss_pred             CCEEEEeCCCCcCCHHHHHHHHHHhCCccccceeecccccccccceEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCC
Confidence            579999999999999999999999999999999765  67899999999999999999998 999999999999999873

>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.8e-18  Score=136.18  Aligned_cols=77  Identities=21%  Similarity=0.348  Sum_probs=72.8

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~  242 (405)
                      ..+|||+|||+++|+++|+++|++||.|.+++++.+.+.++|||||+|.+.++|.+|++ |||..++|++|+|.+++.
T Consensus         8 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~V~~a~~   85 (89)
T d1cvja2           8 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS   85 (89)
T ss_dssp             TTEEEEESCCSSCCHHHHHHHHHTTSCEEEEEECCBTTBCCSCEEEEESCHHHHHHHTTSSSEEEETTEEEEEEECCC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEeecCCCcceeEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence            46899999999999999999999999999999988877789999999999999999998 999999999999999873

>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins A2/B1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2.3e-18  Score=139.46  Aligned_cols=77  Identities=14%  Similarity=0.239  Sum_probs=72.4

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeeccC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~~  242 (405)
                      .++|||+|||+++|+++|+++|++||.|.++.|+.+  ++.++|||||+|.+.++|.+|+.++|+.|+|+.|.|.++..
T Consensus        20 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~~~kg~aFV~f~~~~~a~~al~~~~~~l~G~~i~V~~a~~   98 (103)
T d1x4ba1          20 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVA   98 (103)
T ss_dssp             HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCSS
T ss_pred             CCEEEEeCCCCcCCHHHHHHHHHhhCcccceeecccccCCCccCeEEEEECCHHHHHHHHHhCCCeECCEEEEEEECcc
Confidence            579999999999999999999999999999999765  66899999999999999999999999999999999998863

>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 8
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.75  E-value=2.1e-18  Score=135.57  Aligned_cols=76  Identities=25%  Similarity=0.374  Sum_probs=72.2

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST  241 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~  241 (405)
                      .++|||+|||+++|+++|+++|++||+|.+|+++.+  +|.++|||||+|.+.++|+.|+. |||..+.|++|+|+++.
T Consensus         7 ~~~l~V~nL~~~~t~~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~f~~~~~A~~A~~~lng~~l~g~~l~V~~a~   85 (88)
T d1rk8a_           7 GWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCF   85 (88)
T ss_dssp             CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHcCCcccccccccccccccccceeEEECCHHHHHHHHHHcCCCEECCEEEEEEEec
Confidence            679999999999999999999999999999999765  67899999999999999999998 99999999999999986

>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.75  E-value=4.8e-18  Score=136.30  Aligned_cols=78  Identities=19%  Similarity=0.351  Sum_probs=73.1

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~  242 (405)
                      .++|||+|||+++++++|+++|++||.|.+++++.+  ++.++|||||+|.+.++|..|++ |||..|+|++|+|.+++.
T Consensus         8 ~~~lfV~nL~~~~t~~~l~~~F~~~g~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~A~~~l~g~~~~gr~i~V~~a~~   87 (99)
T d1whwa_           8 SGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTI   87 (99)
T ss_dssp             CEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCC
T ss_pred             CCEEEEECCCCcCCHHHHHHHHHhcCCceeeeecccccccccCcceEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence            568999999999999999999999999999999765  67899999999999999999998 999999999999999875


Q ss_pred             C
Q psy14559        243 S  243 (405)
Q Consensus       243 ~  243 (405)
                      .
T Consensus        88 ~   88 (99)
T d1whwa_          88 K   88 (99)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor 10 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Arginine/serine-rich splicing factor 10
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2.3e-18  Score=133.63  Aligned_cols=72  Identities=18%  Similarity=0.322  Sum_probs=68.1

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEE
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQM  237 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V  237 (405)
                      .++|||+|||+++|+++|+++|++||.|.+|+++.+  ++.++|||||+|.+.++|..|+. |||..|.|++|+|
T Consensus         9 ~~~l~V~nL~~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gr~i~V   83 (83)
T d2cqca1           9 NCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV   83 (83)
T ss_dssp             GGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHhCCCccccccccccccccccceEEEECCHHHHHHHHHHcCCCEECCEEeEC
Confidence            678999999999999999999999999999999765  57889999999999999999998 9999999999987

>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 3 subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2.2e-18  Score=135.99  Aligned_cols=76  Identities=16%  Similarity=0.332  Sum_probs=72.2

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST  241 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~  241 (405)
                      .++|||+|||.++++++|+++|++||.|.++.++.+  ++.++|||||+|.+.++|.+|++ |||..++|++|+|++++
T Consensus         8 ~~~i~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~t~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~ak   86 (90)
T d2cq0a1           8 NATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAK   86 (90)
T ss_dssp             SEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHhcccccccccccccccccccceeEEECCHHHHHHHHHHhCCCEECCEEEEEEeee
Confidence            679999999999999999999999999999999765  67899999999999999999998 99999999999999987

>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.75  E-value=2.9e-18  Score=130.73  Aligned_cols=74  Identities=14%  Similarity=0.272  Sum_probs=69.6

Q ss_pred             cEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeec
Q psy14559        167 RTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHS  240 (405)
Q Consensus       167 rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a  240 (405)
                      .||||+|||+++++++|+++|++||.|.+++++.+.+..++||||+|.+.++|.+|+.+||..|+|++|.|+.+
T Consensus         1 Ttv~V~nlp~~~t~~~l~~~F~~~G~I~~v~~~~~~~~~~~~afV~F~~~~~a~~Al~~~~~~i~g~~i~V~~~   74 (75)
T d2ghpa2           1 TTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKTHKVVGQNEIIVSHL   74 (75)
T ss_dssp             CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHTTTTCEETTEECEEEEC
T ss_pred             CEEEEECCCCCCCHHHHHHHHhcCCceEEEEEEeeccccceEEEEEEcchHHhHHHHHhcCcEECCEEEEEEEC
Confidence            38999999999999999999999999999999877666789999999999999999999999999999999875

>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.74  E-value=2.7e-18  Score=136.61  Aligned_cols=78  Identities=18%  Similarity=0.352  Sum_probs=72.4

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc---CCCCCcEEEEEECCHHHHHHHHH-h-CCceeCCeeEEEeec
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR---ENDTNKYALVEFSDQACVIPALK-L-NGTNLKGKTLQMFHS  240 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~---~~~~rg~afV~F~~~e~A~~Al~-l-ng~~l~g~~i~V~~a  240 (405)
                      .++|||+|||+++++++|+++|++||.|.+++++.+   +|.++|||||+|.+.++|.+|+. | ||..+.|++|.|++|
T Consensus         8 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~g~~rg~afV~f~~~~~A~~Ai~~l~~~~~~~Gr~l~V~~A   87 (94)
T d2cpha1           8 TSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWA   87 (94)
T ss_dssp             CCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEEC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEEeccccCCCcccEEEEEECCHHHHHHHHHHccCCcEECCEEEEEEEc
Confidence            678999999999999999999999999999999754   67899999999999999999998 7 999999999999999


Q ss_pred             cCC
Q psy14559        241 TQS  243 (405)
Q Consensus       241 ~~~  243 (405)
                      +..
T Consensus        88 ~~~   90 (94)
T d2cpha1          88 DSE   90 (94)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            743

>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=2e-18  Score=134.80  Aligned_cols=75  Identities=17%  Similarity=0.299  Sum_probs=71.3

Q ss_pred             EEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559        168 TLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       168 tvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~  242 (405)
                      +|||+|||+++|+++|+++|++||+|.+++++.+  +|.++|||||+|.+.++|..|+. |||..++|++|.|++++.
T Consensus         3 rlfV~nlp~~~te~~l~~~F~~~G~v~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~a~~~l~~~~l~g~~l~V~~A~~   80 (85)
T d2u2fa_           3 KLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASV   80 (85)
T ss_dssp             CEEEETCCSSCCSHHHHHHHTSSSCEEEEEEECCCSSSCCCCEEEEEESSSHHHHHHHHTSSSCCCSSSCCEEEECCC
T ss_pred             EEEEECCCCCCCHHHHHHHHHhcCccceEEeeccccccccceeEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence            6999999999999999999999999999999865  68899999999999999999999 999999999999999873

>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Lupus LA protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=3.3e-18  Score=133.55  Aligned_cols=76  Identities=12%  Similarity=0.206  Sum_probs=71.8

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeecc
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHST  241 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~  241 (405)
                      .++|||+|||+++|+++|+++|+.||+|.+|++..+ ++.++|||||+|.+.++|.+|++++|..+.|++|.|..+.
T Consensus         6 ~rtvfV~nlp~~~te~~l~~~F~~~G~v~~v~l~~~~~~~~kG~afV~f~~~e~a~~al~~~~~~~~g~~l~v~~~~   82 (85)
T d1zh5a2           6 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKD   82 (85)
T ss_dssp             TTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHTCCCCEETTEECEEEEGG
T ss_pred             cCEEEEECCCCCCCHHHHHHHHHHhcccccceeeeeccCCcceEEEEEEcCHHHHHHHHHHCCCEECCEEEEEEEcC
Confidence            689999999999999999999999999999999765 6788999999999999999999999999999999998865

>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.74  E-value=2.9e-18  Score=132.43  Aligned_cols=75  Identities=21%  Similarity=0.267  Sum_probs=66.3

Q ss_pred             cEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559        167 RTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST  241 (405)
Q Consensus       167 rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~  241 (405)
                      +||||+|||+++|+++|+++|++||.|..+.+..+  .|.++|||||+|.+.++|.+|++ |||..+.|++|.|++++
T Consensus         2 ~tl~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~i~V~~a~   79 (81)
T d2ghpa1           2 CTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSN   79 (81)
T ss_dssp             CEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred             cEEEEECCCCcCCHHHHHHHHHHhCcEEeeeeecccccccccceeEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence            69999999999999999999999999988877533  67899999999999999999998 99999999999999986

>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein D0 (AUF1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.3e-18  Score=132.67  Aligned_cols=73  Identities=11%  Similarity=0.225  Sum_probs=68.4

Q ss_pred             EEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeec
Q psy14559        168 TLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHS  240 (405)
Q Consensus       168 tvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a  240 (405)
                      +|||||||+++|+++|+++|++||.|.+++++.+  +++++|||||+|.+.++|++|+++++..++|+.|.|+.|
T Consensus         1 klfVgnLp~~~te~~l~~~F~~~G~I~~v~i~~d~~t~~~rG~~FV~f~~~~~a~~al~~~~~~i~g~~i~vk~A   75 (75)
T d1x0fa1           1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA   75 (75)
T ss_dssp             EEEEESCCSSCCHHHHHHHHHHHSCEEEEECCCCTTTCCTTCCEEEEESSSHHHHHHTTCSSCCBTTBCCEEECC
T ss_pred             CEEEcCCCCCCCHHHHHHHHHHhCCcccccccccccccccccEEEEEECCHHHHHHHHhhCCCEECCEEeEEEEC
Confidence            5999999999999999999999999999999765  688999999999999999999998889999999998764

>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.74  E-value=2.8e-18  Score=134.23  Aligned_cols=76  Identities=17%  Similarity=0.257  Sum_probs=68.5

Q ss_pred             CcEEEEeCCCCCCC-HHHHHHHHhcCCCeeEEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeecc
Q psy14559        166 RRTLVAINIEESVS-PQELVDFFQKVGTVNYIRFCTR---ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHST  241 (405)
Q Consensus       166 ~rtvfV~NLp~~~t-ee~L~~~F~~~G~I~~i~i~~~---~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~  241 (405)
                      +++|||+|||++++ +++|+++|++||.|.+|+++.+   ++.++|||||+|.+.++|.+|++|||..|+|++|+|++++
T Consensus         4 ~~~l~V~nLp~~~t~ed~l~~~F~~~G~i~~v~i~~~~~~~~~~kg~afV~f~~~~~a~~Al~~n~~~~~gr~l~V~~a~   83 (86)
T d2ghpa3           4 GREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERALQMNRSLLGNREISVSLAD   83 (86)
T ss_dssp             TTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHGGGTTEEETTEEEEEEECC
T ss_pred             CCEEEEECCCCCcccHHHHHHHHHhhhhccceeeecccCCccccceeeeEEECCHHHHHHHHhcCCCEECCEEEEEEEcC
Confidence            78999999999976 5669999999999999998543   6789999999999999999999999999999999999986

>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cold-inducible RNA-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=3.3e-18  Score=134.78  Aligned_cols=77  Identities=16%  Similarity=0.308  Sum_probs=71.8

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~  242 (405)
                      .++|||+|||+++++++|+++|++||.|..+.++.+  ++.++|||||+|.+.++|+.|++ |||..|+|++|+|+++..
T Consensus         5 ~~kifV~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~Ai~~l~~~~~~g~~l~V~~a~~   84 (90)
T d1x5sa1           5 EGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGK   84 (90)
T ss_dssp             CSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEEC
T ss_pred             CCEEEEECCCCcCCHHHHHHhhhccccccceeeccccccccccceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCC
Confidence            678999999999999999999999999999988643  67899999999999999999998 999999999999999863

>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=5.1e-18  Score=132.42  Aligned_cols=75  Identities=17%  Similarity=0.309  Sum_probs=69.1

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCe--eEEEeec
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGK--TLQMFHS  240 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~--~i~V~~a  240 (405)
                      .++|||+|||+++|+++|+++|++||+|.+++++.+  ++.++|||||+|.+.++|..|++ |||..+.|+  +|.|.+|
T Consensus         6 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kg~afV~f~~~~~a~~Ai~~lng~~~~G~~~~i~V~~A   85 (85)
T d1fxla2           6 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA   85 (85)
T ss_dssp             TCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHhCCccccccccccccccCCCeeEEEEcCHHHHHHHHHHhCCCEeCCCCEEEEEEeC
Confidence            578999999999999999999999999999999765  67899999999999999999998 999999984  5888875

>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding region containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.5e-17  Score=134.44  Aligned_cols=76  Identities=16%  Similarity=0.214  Sum_probs=70.2

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~  242 (405)
                      .++|||+|||+++++++|+++|++||.|.+++++.+  ++.++|||||+|.+.++|.+|++ +|+ .|.|++|.|+.+..
T Consensus        10 ~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~kg~afV~f~~~~~A~~Ai~~~~~-~l~Gr~l~V~~a~~   88 (103)
T d2cqda1          10 FTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLAYL   88 (103)
T ss_dssp             SSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEESTT
T ss_pred             CcEEEEeCCCCcCcHHHHHHHHhhcccccceeccccccccccCCeEEEEECCHHHHHHHHHHCCC-cCCCEEEEEEEcCC
Confidence            578999999999999999999999999999999765  67899999999999999999999 665 79999999998864

>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.73  E-value=6.8e-18  Score=131.61  Aligned_cols=75  Identities=17%  Similarity=0.270  Sum_probs=69.8

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCC--eeEEEeec
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKG--KTLQMFHS  240 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g--~~i~V~~a  240 (405)
                      .++|||+|||+++++++|+++|++||+|.+++++.+  ++.++|||||+|.+.++|..|++ |||..+.|  ++|+|++|
T Consensus         6 ~t~lfV~nlp~~~te~~l~~~F~~~G~i~~~~~~~d~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~V~~A   85 (85)
T d1b7fa2           6 DTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA   85 (85)
T ss_dssp             TCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhhCCEeeeeeecccccccCceeEEEEECCHHHHHHHHHHHCCCEeCCCCeEEEEEEC
Confidence            568999999999999999999999999999999765  67899999999999999999998 99999977  88999875

>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Neural RNA-binding protein Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.73  E-value=3.2e-18  Score=130.03  Aligned_cols=73  Identities=11%  Similarity=0.251  Sum_probs=68.2

Q ss_pred             EEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeec
Q psy14559        168 TLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHS  240 (405)
Q Consensus       168 tvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a  240 (405)
                      +|||+|||+++|+++|+++|++||.|..+.++.+  ++.++|||||+|.+.++|.+|+++||+.|+|++|+|+.|
T Consensus         1 rlfV~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~afV~F~~~~~a~~al~~~~~~l~gr~i~V~~A   75 (75)
T d2msta_           1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA   75 (75)
T ss_dssp             CEEEECCCSSCCHHHHHHHHHTTSCCSEECCBCCTTCTTSCCEEEEECSCHHHHHHHHHCSSCCBTTBCCEEEEC
T ss_pred             CEEEeCCCCCCCHHHHHHHHHHhCCcceeeeeeeccccccCceeEEEECCHHHHHHHHhcCCCEECCeEEEEEEC
Confidence            4899999999999999999999999999988654  678999999999999999999999999999999999875

>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.2e-17  Score=131.79  Aligned_cols=76  Identities=12%  Similarity=0.297  Sum_probs=69.9

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeeccC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~~  242 (405)
                      .++|||+|||+++|+++|+++|++||.|.+|+++.|  +|.++|||||+|.+.++|.+|++ ++..|+|+.|.|+++..
T Consensus         8 ~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~srG~aFV~f~~~~~a~~al~-~~~~l~Gr~i~v~~a~~   85 (90)
T d2cqga1           8 TSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRWCDCKLPNS   85 (90)
T ss_dssp             CCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTEEEEEECCCT
T ss_pred             CCeEEEECCCCCCCHHHHHHHHHhhcccceeeeccCCCCcccCCEEEEEECCHHHHHHHHh-cCCccCCEEeEEEeCCC
Confidence            578999999999999999999999999999999875  68899999999999999999998 34589999999998864

>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Pre-mRNA branch site protein p14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.3e-17  Score=137.02  Aligned_cols=75  Identities=25%  Similarity=0.318  Sum_probs=70.6

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST  241 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~  241 (405)
                      .++|||+|||+++|+++|+++|++||.|.+|++.. ++.++|||||+|.+.++|..|+. |||..|.|++|.|.++.
T Consensus         7 ~r~l~V~nLp~~~te~~l~~~F~~~G~v~~i~~~~-~~~~kG~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~   82 (114)
T d2f9da1           7 NRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGN-TPETRGTAYVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYN   82 (114)
T ss_dssp             CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEC-STTTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred             CCEEEEECCCCCCCHHHHHHHHhhcCCeEeecccc-cCCcCCeEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence            68999999999999999999999999999999865 45679999999999999999998 99999999999999985

>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cleavage stimulation factor, 64 kda subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=3.4e-18  Score=138.42  Aligned_cols=76  Identities=26%  Similarity=0.495  Sum_probs=71.6

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST  241 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~  241 (405)
                      .+||||+|||+++++++|+++|++||+|.+|+++.+  +|.++|||||+|.+.++|..|++ |||..|.|++|+|.++.
T Consensus         8 ~rtl~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~i~V~~a~   86 (104)
T d1p1ta_           8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA   86 (104)
T ss_dssp             HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred             CCEEEEECCCCcCCHHHHHHhhhccccccccccccccceeccCCceEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence            578999999999999999999999999999999754  67899999999999999999998 99999999999999976

>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CUG triplet repeat RNA-binding protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=9.2e-18  Score=135.49  Aligned_cols=77  Identities=17%  Similarity=0.311  Sum_probs=71.9

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~  242 (405)
                      .++|||+|||+++++++|+++|++||.|.++.++.+  ++.++|||||+|.+.++|..|++ |||..|+|++|+|++++.
T Consensus        18 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~g~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~~i~V~~a~~   97 (102)
T d2cpza1          18 GANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRS   97 (102)
T ss_dssp             TCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhhccccccceeeecccCCCccceEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEeCC
Confidence            568999999999999999999999999999998754  67889999999999999999998 999999999999999863

>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

Probab=99.72  E-value=1.4e-18  Score=137.52  Aligned_cols=77  Identities=18%  Similarity=0.208  Sum_probs=72.0

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeeccC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~~  242 (405)
                      .++|||+|||+++|+++|+++|++||.|.++.++.+ +|+++|||||+|.+.++|.+|++|||..++|++|+|.+++.
T Consensus        13 ~~~ifV~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~g~~kg~afv~F~~~e~a~~Al~~~g~~~~g~~i~V~~ak~   90 (91)
T d1fjeb1          13 PFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKG   90 (91)
T ss_dssp             SEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECCCC
T ss_pred             CcEEEEeCccCcchHHHHHHHHhcCCcEEEeeeeecCCCCccEEeEEeeCCHHHHHHHHhcCCcEECCEEEEEEecCC
Confidence            679999999999999999999999999999888544 78899999999999999999999999999999999999874

>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.71  E-value=1.7e-17  Score=129.20  Aligned_cols=73  Identities=25%  Similarity=0.379  Sum_probs=67.4

Q ss_pred             EEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CC---CCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559        169 LVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--EN---DTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST  241 (405)
Q Consensus       169 vfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~---~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~  241 (405)
                      |||+|||+++|+++|+++|++||.|.+++++.+  ++   .++|||||+|.+.++|..|++ |||..++|++|.|++++
T Consensus         1 LfV~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~~~kG~afV~f~~~~~A~~A~~~~~~~~~~g~~i~V~~a~   79 (85)
T d2cpfa1           1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISE   79 (85)
T ss_dssp             EEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECSS
T ss_pred             CEEcCCCCCCCHHHHHHHHHHhCCccccceecccccccccccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence            799999999999999999999999999999754  22   368999999999999999998 99999999999999985

>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.1e-17  Score=129.64  Aligned_cols=74  Identities=16%  Similarity=0.323  Sum_probs=67.9

Q ss_pred             EEEeCCCCCCCHHHHHHHHhcCCCeeEE-EEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559        169 LVAINIEESVSPQELVDFFQKVGTVNYI-RFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       169 vfV~NLp~~~tee~L~~~F~~~G~I~~i-~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~  242 (405)
                      |||+|||+++|+++|+++|++||.|.++ +++.+  +++++|||||+|.+.++|..|++ |||..+.|++|+|+++..
T Consensus         1 lfV~nLp~~~te~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~g~~~~gr~l~v~~a~~   78 (83)
T d1x5ta1           1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFK   78 (83)
T ss_dssp             EEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESCC
T ss_pred             CEEcCCCCcCcHHHHHHHHHHhCceeeeEEEEeeccccccCceEEEEECCHHHHHHHHHhCCCcEECCEEEEEEEecC
Confidence            7999999999999999999999999765 66654  67899999999999999999998 999999999999999863

>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=4.4e-17  Score=132.93  Aligned_cols=74  Identities=16%  Similarity=0.259  Sum_probs=69.2

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQS  243 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~  243 (405)
                      .++|||+|||+++++++|+++|++||+|..|.|    ..++|||||+|.+.++|.+|++ |||..|.|++|.|+++...
T Consensus        10 ~~~l~V~nLp~~~t~~~L~~~F~~fG~I~~v~l----~~~kg~afV~f~~~~~A~~A~~~lng~~~~gr~l~v~~a~~~   84 (111)
T d1whxa_          10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLL----PEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG   84 (111)
T ss_dssp             EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEC----CSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred             CCEEEEECCCCCCCHHHHHhhhhccCCccEEEe----eccCceEEEEEcCHHHHHHHHHHHcCCccCCCeEEEEECCCC
Confidence            579999999999999999999999999999988    3468999999999999999998 9999999999999998654

>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 4B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=7.4e-17  Score=130.30  Aligned_cols=77  Identities=21%  Similarity=0.348  Sum_probs=69.4

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeeccC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR---ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~---~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~~  242 (405)
                      .++|||+|||+++|+++|+++|++|| |.++.++.+   ++.++|||||+|.+.++|++|+.|||..|.|+.|+|.++..
T Consensus        15 ~~~v~V~nLp~~~te~~l~~~f~~~g-~~~~~~~~~~~~~g~~~g~afV~f~~~e~a~~~~~~~~~~~~gr~l~V~~a~~   93 (104)
T d1wi8a_          15 PYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDVADQ   93 (104)
T ss_dssp             CEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEECCC
T ss_pred             CCEEEEeCCCCcCCHHHHHHHHHHhc-cccceeeeeeccCCCcceeeeEEECCHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence            57999999999999999999999999 777777543   56789999999999999998888999999999999999875


Q ss_pred             C
Q psy14559        243 S  243 (405)
Q Consensus       243 ~  243 (405)
                      .
T Consensus        94 ~   94 (104)
T d1wi8a_          94 A   94 (104)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif, single-stranded-interacting protein 1, RBMS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 1, RBMS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1.3e-17  Score=134.26  Aligned_cols=77  Identities=16%  Similarity=0.146  Sum_probs=70.6

Q ss_pred             cCcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559        165 IRRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST  241 (405)
Q Consensus       165 ~~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~  241 (405)
                      ..++|||+|||+++++++|+++|++||.|.++.+..+ ++.++|||||+|.+.++|.+|+. |||..|.|+++.|.+++
T Consensus        17 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~A~~Ai~~lng~~i~gr~~~v~~~~   95 (101)
T d1x5oa1          17 DPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE   95 (101)
T ss_dssp             CTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHhhcccccceeeecccccccccceeEEeCCHHHHHHHHHHhCCCEECCcCCccCCCC
Confidence            3679999999999999999999999999999988655 67789999999999999999998 99999999999887654

>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 28
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=4.9e-17  Score=129.67  Aligned_cols=77  Identities=19%  Similarity=0.351  Sum_probs=70.2

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hC------CceeCCeeEE
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LN------GTNLKGKTLQ  236 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-ln------g~~l~g~~i~  236 (405)
                      .++|||+|||+++|+++|+++|++||.|.++.+..+  ++.++|||||+|.+.++|..|++ ||      |..+.|++|+
T Consensus         8 ~~tlfV~nLp~~~te~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~gr~l~   87 (98)
T d1x4ha1           8 GKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLK   87 (98)
T ss_dssp             CCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEE
T ss_pred             CCEEEEcCCCCcCCHHHHHHHHhccccceeeeeccccccccccceEEEEEcCHHHHHHHHHHcccccccCCcEECCEEEE
Confidence            679999999999999999999999999999998654  56789999999999999999998 76      6789999999


Q ss_pred             EeeccC
Q psy14559        237 MFHSTQ  242 (405)
Q Consensus       237 V~~a~~  242 (405)
                      |++++.
T Consensus        88 v~~a~~   93 (98)
T d1x4ha1          88 VDLAVT   93 (98)
T ss_dssp             EECCCC
T ss_pred             EEECCC
Confidence            999863

>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.1e-16  Score=127.40  Aligned_cols=76  Identities=21%  Similarity=0.322  Sum_probs=70.2

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~  242 (405)
                      .++|||+|||+++|+++|+++|++||.|..+.+..+ +.+++||||+|.+.++|..|++ |||..|.|++|+|++++.
T Consensus        14 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~-~~~~g~afV~f~~~e~a~~Ai~~l~g~~~~g~~l~V~~a~~   90 (95)
T d1x4aa1          14 DCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR-RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS   90 (95)
T ss_dssp             SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS-SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred             CCEEEEECCCCCCCHHHHHHHHhcCCceEEEEeccc-ccccceEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeccC
Confidence            678999999999999999999999999999987543 4578999999999999999998 999999999999999874

>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=8.9e-17  Score=128.19  Aligned_cols=73  Identities=22%  Similarity=0.395  Sum_probs=68.6

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~  242 (405)
                      .++|||+|||.++++++|+++|++||.|.+|+++.+    +|||||+|.+.++|..|+. |||..|+|++|+|.+++.
T Consensus        18 ~~~l~v~nL~~~~te~~L~~~F~~fG~i~~v~i~~~----kg~afV~f~~~~~A~~Ai~~l~~~~i~g~~l~v~~ak~   91 (96)
T d1x4ga1          18 NCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKE   91 (96)
T ss_dssp             CCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred             CCEEEEcCCCCCCCHHHHHHHHHHhCCceEEEEEec----ceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence            568999999999999999999999999999999753    8999999999999999998 999999999999999863

>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=4.9e-17  Score=127.55  Aligned_cols=74  Identities=16%  Similarity=0.252  Sum_probs=67.9

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeeccCC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQS  243 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~~~  243 (405)
                      .++|||+|||+++|+++|+++|++||.|.+|+++   ..++|||||+|.+.++|++|+. +++.|.|++|+|.++...
T Consensus         5 s~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~---~~~~gfafV~f~~~~~a~~a~~-~~~~i~g~~l~v~~a~~k   78 (88)
T d1wf0a_           5 SSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIP---KPFRAFAFVTFADDQIAQSLCG-EDLIIKGISVHISNAEPK   78 (88)
T ss_dssp             CCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECC---SSCCSCCEEECSCHHHHHHTTT-CEEEETTEEEEEECCCCC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEe---eccCceEEEEECCHHHHHHHHh-CCCEECCEEeEEEeCCCC
Confidence            6799999999999999999999999999999873   4578999999999999999986 889999999999998644

>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

Probab=99.67  E-value=6.3e-17  Score=128.95  Aligned_cols=75  Identities=20%  Similarity=0.414  Sum_probs=69.4

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQS  243 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~  243 (405)
                      .++|||+|||+++|+++|+++|++||.|..++.   ++.++|||||+|.+.++|..|+. |||..|.|++|+|.++...
T Consensus        16 ~~~l~V~nL~~~~te~~l~~~F~~~g~v~~~~~---~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~gr~i~V~~a~~k   91 (96)
T d1fjca_          16 ARTLLAKNLSFNITEDELKEVFEDALEIRLVSQ---DGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK   91 (96)
T ss_dssp             GGEEEEESCCSSCCHHHHHHHHCSEEEECCEEE---TTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSS
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcccceeeee---cCccccEEEEEeCCHHHHHHHHHHcCCCEECCEEEEEEEeCCC
Confidence            689999999999999999999999999877754   67889999999999999999998 9999999999999998743

>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein EWS
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=9.6e-17  Score=128.73  Aligned_cols=77  Identities=21%  Similarity=0.433  Sum_probs=68.7

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeE--------EEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCee
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNY--------IRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKT  234 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~--------i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~  234 (405)
                      .++|||+|||+++|+++|+++|++||.|..        +.+..+  ++.++|||||+|.+.++|..|++ |||..|+|++
T Consensus         8 ~~~i~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~d~~~~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~   87 (101)
T d2cpea1           8 NSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSK   87 (101)
T ss_dssp             CCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEE
T ss_pred             CCEEEEECCCCcCCHHHHHHHHHHCceEEEeeecccceeEEeeccccccccceeeEEecCHHHHHHHHHHhCCCEECCEE
Confidence            679999999999999999999999999853        333333  57789999999999999999998 9999999999


Q ss_pred             EEEeeccC
Q psy14559        235 LQMFHSTQ  242 (405)
Q Consensus       235 i~V~~a~~  242 (405)
                      |+|++++.
T Consensus        88 i~V~~a~~   95 (101)
T d2cpea1          88 LKVSLARK   95 (101)
T ss_dssp             CEEECSSC
T ss_pred             EEEEEcCC
Confidence            99999874

>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: APOBEC1 stimulating protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.5e-16  Score=124.11  Aligned_cols=72  Identities=25%  Similarity=0.356  Sum_probs=67.6

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST  241 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~  241 (405)
                      .++|||+|||+++++++|+++|++||.|..+.+    +.++|||||+|.+.++|..|+. |||..|+|+.|+|++++
T Consensus         8 ~k~l~V~nLp~~~te~~l~~~F~~~g~i~~~~~----~~~rg~afV~f~~~~~A~~Ai~~l~~~~i~g~~i~V~~ak   80 (86)
T d2cpda1           8 VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV----KKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAK   80 (86)
T ss_dssp             CCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEE----EECSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCC
T ss_pred             CCEEEEcCCCCCCCHHHHHHhhcccceeeeEEE----ccccEEEEEEeCCHHHHHHHHHHcCCCEECCEEEEEEecc
Confidence            479999999999999999999999999988877    4578999999999999999998 99999999999999986

>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing octamer-binding protein, NonO {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Non-POU domain-containing octamer-binding protein, NonO
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=8.4e-17  Score=125.72  Aligned_cols=73  Identities=18%  Similarity=0.330  Sum_probs=68.4

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~  242 (405)
                      .++|||+|||+++++++|+++|++||+|.+|++..    .+|||||+|.+.++|..|+. |||..+.|++|+|++|..
T Consensus         8 ~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~i~~~~----~k~~afV~f~~~~~A~~A~~~l~g~~i~g~~l~V~~A~~   81 (86)
T d2cpja1           8 RSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK----DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACH   81 (86)
T ss_dssp             TTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEET----TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSC
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHhCCceEeeeec----ccceEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence            56899999999999999999999999999999953    47899999999999999998 999999999999999874

>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.66  E-value=2.1e-16  Score=122.43  Aligned_cols=73  Identities=18%  Similarity=0.290  Sum_probs=67.2

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeC-CeeEEEeecc
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLK-GKTLQMFHST  241 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~-g~~i~V~~a~  241 (405)
                      .++|||+|||+++|+++|+++|++||.|.++++..+   .+|||||+|.+.++|..|+. |+|..+. |++|+|.+|+
T Consensus         8 ~~tl~V~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~i~v~~ak   82 (83)
T d2b0ga1           8 NQILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPN---RHDIAFVEFTTELQSNAAKEALQGFKITPTHAMKITFAK   82 (83)
T ss_dssp             CSEEEEESCCTTCCHHHHHHHHTTSTTEEEEEECTT---TCSCEEEEESSHHHHHHHHHHHTTCBSSTTCBCEEEECC
T ss_pred             CCEEEEECCCCCCCHHHHHhhhccCccEEEeeeecc---cceeEEEecCCHHHHHHHHHHhCCcEeCCCcEEEEEEec
Confidence            579999999999999999999999999999999543   47899999999999999998 9999885 6899999986

>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: E3 ubiquitin protein ligase CNOT4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=5.6e-17  Score=127.55  Aligned_cols=73  Identities=15%  Similarity=0.339  Sum_probs=65.7

Q ss_pred             CcEEEEeCCCCCCCHHHH---HHHHhcCCCeeEEEEecc--CC---CCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEE
Q psy14559        166 RRTLVAINIEESVSPQEL---VDFFQKVGTVNYIRFCTR--EN---DTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQ  236 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L---~~~F~~~G~I~~i~i~~~--~~---~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~  236 (405)
                      +++|||+|||+++++++|   .++|++||+|.+|.++.+  ++   ..+|||||+|.+.++|.+|++ |||..+.|++|+
T Consensus         8 ~n~vyV~nLp~~~t~~~l~~~~e~F~~~G~I~~v~i~~~~~~~~~~~~~g~aFV~f~~~~~A~~Ai~~lng~~~~gr~lk   87 (89)
T d2cpia1           8 KNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLK   87 (89)
T ss_dssp             SSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred             cCEEEEECCCCccCHHHHHHHHHHhcccCCceEEEEeeccCcCCCCCcceEEEEecccchhHHHHHHHhCCCEECCEEEE
Confidence            578999999999999999   778999999999999765  22   345999999999999999998 999999999999


Q ss_pred             Ee
Q psy14559        237 MF  238 (405)
Q Consensus       237 V~  238 (405)
                      ++
T Consensus        88 vS   89 (89)
T d2cpia1          88 AS   89 (89)
T ss_dssp             EE
T ss_pred             EC
Confidence            74

>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=2.2e-16  Score=123.64  Aligned_cols=75  Identities=27%  Similarity=0.257  Sum_probs=67.7

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCcee-CCeeEEEeeccC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNL-KGKTLQMFHSTQ  242 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l-~g~~i~V~~a~~  242 (405)
                      .++|||+|||+++++++|+++|++||.|..+.+..  ++++|||||+|.+.++|.+|+. |+|..+ .|++|+|++++.
T Consensus        10 s~tL~V~NLp~~~te~~l~~~F~~~G~v~~~~~~~--~~~~~~afV~f~~~~~A~~A~~~l~~~~i~~g~~l~v~~sk~   86 (88)
T d2adca2          10 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFF--QKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS   86 (88)
T ss_dssp             CSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEEC--SSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred             CCEEEEECCCCCCCHHHHHHHhhccCCEEEEEEee--ecccceeEEEECCHHHHHHHHHhccCCEecCCCEEEEEeCCC
Confidence            57999999999999999999999999998876643  4568899999999999999998 999988 589999999875

>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: IGF-II mRNA-binding protein 2 isoform A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=4.7e-17  Score=125.38  Aligned_cols=71  Identities=25%  Similarity=0.344  Sum_probs=64.9

Q ss_pred             EEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCc-eeCCeeEEEeeccC
Q psy14559        168 TLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGT-NLKGKTLQMFHSTQ  242 (405)
Q Consensus       168 tvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~-~l~g~~i~V~~a~~  242 (405)
                      +|||+|||+++|+++|+++|++||.|.++.+.    .++|||||+|.+.++|..|++ |||. .+.|++|+|+++..
T Consensus         3 ~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~----~~rg~aFV~f~~~~~A~~Ai~~lng~~~~~G~~i~V~~a~~   75 (80)
T d2cqha1           3 KLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL----LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVS   75 (80)
T ss_dssp             CEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE----EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCC
T ss_pred             EEEEECCCCCCCHHHHHHHHHHhCcEEEeEEe----cccceEEEEECCHHHHHHHHHHhCCCeEECCEEEEEEEcCC
Confidence            69999999999999999999999999877663    357999999999999999998 9996 69999999999873

>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins C1/C2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins C1/C2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=2.4e-16  Score=126.16  Aligned_cols=72  Identities=15%  Similarity=0.279  Sum_probs=66.4

Q ss_pred             CcEEEEeCCC-CCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCC
Q psy14559        166 RRTLVAINIE-ESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQS  243 (405)
Q Consensus       166 ~rtvfV~NLp-~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~  243 (405)
                      .++|||+||| ..+++++|+++|++||.|.+|++      ++|||||+|.+.++|.+|+. |||+.|.|++|+|++++..
T Consensus        15 ~~~lfV~nL~~~~~~~~~L~~~F~~~G~i~~~~i------~rg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~   88 (98)
T d1wf2a_          15 NSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSV------HKGFAFVQYVNERNARAAVAGEDGRMIAGQVLDINLAAEP   88 (98)
T ss_dssp             CCCEEEEEECTTTCCHHHHHHSSTTSSCEEEEEE------ETEEEEEEESSHHHHHHHHHTTTTCEETTEECEEEETTSC
T ss_pred             CcEEEEeCCCcccCCHHHHHHHHhhcCCEEEEEE------eCCeEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence            5679999997 57889999999999999999998      47999999999999999998 9999999999999998743

>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 41, RBM41
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=4.1e-17  Score=131.25  Aligned_cols=77  Identities=22%  Similarity=0.314  Sum_probs=71.9

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~  242 (405)
                      .++|||+|||.++++++|+++|++||.|..+.+..+  +|.++|||||+|.+.++|..|+. |||..|.|++|+|++++.
T Consensus        18 s~tl~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~~fV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ak~   97 (102)
T d2cpxa1          18 NKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGKN   97 (102)
T ss_dssp             CSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECCC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHhhccceeeEEeecccccccccccceEEeccHHHHHHHHHHhCCCEECCEEEEEEeCCC
Confidence            679999999999999999999999999998877543  78899999999999999999998 999999999999999974

>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=2.8e-16  Score=122.16  Aligned_cols=79  Identities=11%  Similarity=0.156  Sum_probs=67.9

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      +...++|||+|||+++|+++|+++|+.||+|.+++| +.  |..+++++|||||+|.+.++|+.|+++++..+.++.+.|
T Consensus         3 pe~~~~lfV~nlp~~~te~~l~~~F~~~G~i~~v~i-~~--d~~tg~~kG~afV~f~~~~~a~~ai~~~~~~i~Gr~i~V   79 (84)
T d1l3ka1           3 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVV-MR--DPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEP   79 (84)
T ss_dssp             CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE-EE--CTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEE
T ss_pred             CCCCcEEEEECCCCCCCHHHHHHHHHhhccccceee-cc--cccCCCcccEEEEEEcCHHHHHHHHHhCCCEECCEEEEE
Confidence            445689999999999999999999999999999999 43  335688999999999999999999998777776666655


Q ss_pred             ee
Q psy14559         88 TP   89 (405)
Q Consensus        88 v~   89 (405)
                      ..
T Consensus        80 ~~   81 (84)
T d1l3ka1          80 KR   81 (84)
T ss_dssp             EE
T ss_pred             Ee
Confidence            43

>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.9e-16  Score=127.67  Aligned_cols=76  Identities=16%  Similarity=0.223  Sum_probs=69.1

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeE-EEEec-cCCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeecc
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNY-IRFCT-RENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHST  241 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~-i~i~~-~~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~  241 (405)
                      ..+|||+|||+++|+++|+++|+.||.|.. +.+.. .+|.++|||||+|.+.++|++|+.+||..|+|+.|.|..+.
T Consensus         8 ~~~v~v~nLp~~~t~~~l~~~F~~~g~i~~~~~~~~~~~g~~~G~afV~F~s~~~a~~Al~~n~~~i~gr~i~V~~~~   85 (103)
T d2cpya1           8 KVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVT   85 (103)
T ss_dssp             CCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEEEC
T ss_pred             ceEEEEeCCCCCCCHHHHhhhhcccceEEEEEEEEeCCCCCcCccEEEEECCHHHHHHHHhcCCCeECCcEEEEEECC
Confidence            678999999999999999999999999876 45544 47889999999999999999999999999999999998864

>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=4.7e-17  Score=127.41  Aligned_cols=69  Identities=22%  Similarity=0.270  Sum_probs=64.5

Q ss_pred             EEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559        168 TLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST  241 (405)
Q Consensus       168 tvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~  241 (405)
                      +|||+|||+++++++|+++|++||+|.++++..     .|||||+|.+.++|++|+. |||..|.|+.|+|.+++
T Consensus         2 rvfV~nlp~~~~~~~l~~~F~~~G~v~~~~i~~-----~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~i~v~~~~   71 (87)
T d3begb1           2 RVVVSGLPPSGSWQDLKDHMREAGDVCYADVYR-----DGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR   71 (87)
T ss_dssp             CEEEEECCSSCCTTHHHHHHGGGSCEEEEEECT-----TSEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred             eEEEECCCCcCCHHHHHHHHhhhcccccccccc-----cceeeEEeCCHHHHHHHHHHhCCCEECCcEeEEeEEe
Confidence            699999999999999999999999999999853     4899999999999999997 99999999999988765

>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif, single-stranded-interacting protein 2, RBMS2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 2, RBMS2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=4.6e-17  Score=122.67  Aligned_cols=68  Identities=18%  Similarity=0.329  Sum_probs=63.6

Q ss_pred             EEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEE
Q psy14559        169 LVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQ  236 (405)
Q Consensus       169 vfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~  236 (405)
                      |||+|||+++|+++|+++|++||.|..+++..+  ++.++|||||+|.+.++|.+|+. |||..+.|+.|+
T Consensus         1 lyV~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~Gr~~k   71 (72)
T d1x4ea1           1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAK   71 (72)
T ss_dssp             EEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCC
T ss_pred             CEEeCCCCcCCHHHHHHHHhhhccccccccccccccccccceeEEEECCHHHHHHHHHHhCCCEECCEECc
Confidence            799999999999999999999999999998654  67899999999999999999998 999999999764

>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Negative elongation factor E, NELF-E
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.9e-16  Score=121.58  Aligned_cols=70  Identities=20%  Similarity=0.283  Sum_probs=65.7

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST  241 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~  241 (405)
                      .+||||+|++  +|+++|+++|++||.|.++.+.    +.+|||||+|.+.++|..|+. |||..+.|++|+|++++
T Consensus         5 ~~ti~V~~~~--~te~~L~~~F~~~G~I~~v~~~----~~~~~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~   75 (79)
T d2bz2a1           5 GNTLYVYGED--MTPTLLRGAFSPFGNIIDLSMD----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR   75 (79)
T ss_dssp             CCEEEEECSS--CCHHHHHHHHSTTCCCSCEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred             CCEEEEECCC--CCHHHHHHHHhccCccceeeec----cCCCEEEEEEcccHHHHHHHHHhCCCEECCEEEEEEEec
Confidence            6899999996  8999999999999999999984    457899999999999999998 99999999999999986

>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=3.1e-16  Score=127.47  Aligned_cols=75  Identities=28%  Similarity=0.433  Sum_probs=68.6

Q ss_pred             CcEEEEeCCCC-CCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCC
Q psy14559        166 RRTLVAINIEE-SVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQS  243 (405)
Q Consensus       166 ~rtvfV~NLp~-~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~  243 (405)
                      .++|||+|||+ .+|+++|+++|++||+|.+|.+..+   .+|||||+|.+.++|.+|++ |||..|.|+.|+|.+++..
T Consensus         2 ~~~l~V~nL~p~~~te~~L~~~F~~fG~I~~v~i~~~---~kg~afV~f~~~~~A~~ai~~lng~~l~g~~l~v~~s~~~   78 (109)
T d2adca1           2 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFN---KKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ   78 (109)
T ss_dssp             CSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCT---TSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCC
T ss_pred             CCEEEEeCCCcccCCHHHHHHHHhhccccceEEEEec---ccceEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCC
Confidence            46899999965 5999999999999999999999654   47899999999999999998 9999999999999998754

>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding region containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=5.5e-16  Score=125.07  Aligned_cols=80  Identities=14%  Similarity=0.138  Sum_probs=67.6

Q ss_pred             cCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCcccccee
Q psy14559          6 VAPVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRAL   85 (405)
Q Consensus         6 ~~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~   85 (405)
                      +.....++|||+|||+++|+++|+++|+.||+|.+|++ +.  +..+++++|||||+|.+.++|+.|++.+|..+.++.+
T Consensus         5 ~~d~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i-~~--d~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~Gr~l   81 (103)
T d2cqda1           5 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVV-IT--DRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKA   81 (103)
T ss_dssp             CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEE-SC--CSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEEC
T ss_pred             CCCCCCcEEEEeCCCCcCcHHHHHHHHhhcccccceec-cc--cccccccCCeEEEEECCHHHHHHHHHHCCCcCCCEEE
Confidence            33556688999999999999999999999999999999 43  3356889999999999999999999988886555555


Q ss_pred             EEe
Q psy14559         86 VVT   88 (405)
Q Consensus        86 ~vv   88 (405)
                      .|-
T Consensus        82 ~V~   84 (103)
T d2cqda1          82 NVN   84 (103)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CBP20, 20KDa nuclear cap-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2.5e-16  Score=124.79  Aligned_cols=82  Identities=18%  Similarity=0.365  Sum_probs=68.2

Q ss_pred             CCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEe
Q psy14559          9 VKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVT   88 (405)
Q Consensus         9 ~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv   88 (405)
                      ..++||||+|||+++|+++|+++|+.||+|.+|++ +.  +..++.++|||||+|.+.++|..|+..+|+..+++..+.+
T Consensus         5 ~~s~tlfV~nlp~~~te~~l~~~F~~~G~i~~v~i-~~--~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~gr~i~V   81 (93)
T d1h2vz_           5 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIM-GL--DKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRT   81 (93)
T ss_dssp             TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE-EE--CTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHCCcceecc-cc--ccccccccceEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence            46789999999999999999999999999999999 43  3356889999999999999999999755555555666666


Q ss_pred             ecCCC
Q psy14559         89 PYNSG   93 (405)
Q Consensus        89 ~~~~~   93 (405)
                      .|+.+
T Consensus        82 ~~a~~   86 (93)
T d1h2vz_          82 DWDAG   86 (93)
T ss_dssp             EEESC
T ss_pred             EEcCC
Confidence            66543

>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=6.6e-16  Score=124.76  Aligned_cols=78  Identities=19%  Similarity=0.231  Sum_probs=70.2

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEe-c-cCCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeeccCC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFC-T-RENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQS  243 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~-~-~~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~~~  243 (405)
                      ..+|||+|||+++|+++|+++|+.||.|....++ . .++.++|||||+|.+.++|++|+.+|+..|+||.|.|.+++..
T Consensus        15 ~~~v~v~nLP~~~te~dI~~~F~~~g~v~~~v~~~~~~~~~~kG~afV~F~~~e~a~~a~~~~~~~i~gR~i~V~~~~~~   94 (104)
T d1wg5a_          15 DGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRA   94 (104)
T ss_dssp             CCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEECTT
T ss_pred             CcEEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCcceEEEEEeCCHHHHHHHHhhCCCEEcceEEEEEECCHH
Confidence            5689999999999999999999999998875553 3 3678999999999999999999999999999999999998755

>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor 10 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Arginine/serine-rich splicing factor 10
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=3.2e-16  Score=121.34  Aligned_cols=77  Identities=13%  Similarity=0.167  Sum_probs=64.1

Q ss_pred             CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhc-cCCcccccee
Q psy14559          7 APVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHL-TNTVFIDRAL   85 (405)
Q Consensus         7 ~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~-~n~~~~~~~~   85 (405)
                      .+.+.++|||+|||+++|+++|+++|++||.|.+|++..   +..+++++|||||+|.+.++|+.|+.. ++..+.++.+
T Consensus         5 ~p~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gr~i   81 (83)
T d2cqca1           5 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVY---DQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI   81 (83)
T ss_dssp             SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEE---CSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred             CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCCccccccc---cccccccccceEEEECCHHHHHHHHHHcCCCEECCEEe
Confidence            366789999999999999999999999999999999943   334688999999999999999999965 4444545444


Q ss_pred             E
Q psy14559         86 V   86 (405)
Q Consensus        86 ~   86 (405)
                      .
T Consensus        82 ~   82 (83)
T d2cqca1          82 R   82 (83)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Ribonucleoprotein PTB-binding 1, Raver-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=4.1e-16  Score=118.56  Aligned_cols=69  Identities=14%  Similarity=0.245  Sum_probs=63.4

Q ss_pred             EEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccC
Q psy14559        169 LVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       169 vfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~  242 (405)
                      |||+|||+++++++|+++|++|| +..+.+    ++++|||||+|.+.++|.+|+. |||..+.|++|+|++++.
T Consensus         1 i~V~nLp~~~t~~~l~~~F~~~g-~~~~~~----~~~~g~afv~f~~~~~A~~Ai~~ln~~~~~g~~l~V~~a~~   70 (75)
T d1wi6a1           1 ILIRGLPGDVTNQEVHDLLSDYE-LKYCFV----DKYKGTAFVTLLNGEQAEAAINTFHQSRLRERELSVQLQPT   70 (75)
T ss_dssp             EEEECCCTTCCHHHHHHHTTTSC-EEEEEE----ETTTTEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCS
T ss_pred             CEEeCCCCcCCHHHHHHHHhccc-ccceee----cccceeEEEEECCHHHHHHHHHHhCCccCCCCEEEEEEeCC
Confidence            79999999999999999999999 555555    5678999999999999999998 999999999999999864

>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein KIAA1579
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=2.1e-16  Score=123.90  Aligned_cols=73  Identities=15%  Similarity=0.274  Sum_probs=65.0

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQS  243 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~  243 (405)
                      .++|||+|||+++++++|+++|++|| +..+.+    +..+|||||+|.+.++|++|+. |||..|.|++|+|++++..
T Consensus         5 s~~i~V~nLp~~~t~~~l~~lF~~~G-~~~~~~----~~~kg~afV~f~~~~~A~~Ai~~ln~~~~~G~~l~V~~a~~~   78 (88)
T d1wg1a_           5 SSGILVKNLPQDSNCQEVHDLLKDYD-LKYCYV----DRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD   78 (88)
T ss_dssp             CCCEEEESCCSSCCHHHHHHHTCSSC-CCCEEE----EGGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred             CCEEEEeCCCCccChHHHHHHHHhcC-ceeeee----eccCCceEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence            56899999999999999999999999 333444    4568999999999999999998 9999999999999998754

>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=4e-16  Score=119.98  Aligned_cols=77  Identities=16%  Similarity=0.147  Sum_probs=63.7

Q ss_pred             cEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEeecC
Q psy14559         12 KVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTPYN   91 (405)
Q Consensus        12 ~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~~~   91 (405)
                      .+|||+|||+.+|+++|+++|+.||+|.+|+| +.+  ..+++++|||||+|.+.++|..|++.+|+..+++..+.+.++
T Consensus         1 aslfV~nL~~~~te~~l~~~F~~~G~i~~v~i-~~d--~~tg~~~g~aFV~f~~~~~a~~ai~~l~g~~~~gr~i~v~~a   77 (80)
T d1cvja1           1 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRV-CRD--MITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS   77 (80)
T ss_dssp             CEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE-EEC--TTTCCEEEEEEEEESSHHHHHHHHTTSTTCEETTEECEEEEC
T ss_pred             CEEEEeCCCCcCCHHHHHHHHHHhCCEeEEEE-Eec--ccccCCCCceEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence            37999999999999999999999999999999 443  356889999999999999999999765555555555555544

>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=3.3e-16  Score=126.16  Aligned_cols=77  Identities=12%  Similarity=0.250  Sum_probs=69.5

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeeccCC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQS  243 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~~~  243 (405)
                      ..+|||+|||+++|+++|+++|+.||. ..+.++.+ ++..+|||||+|.+.++|++|+++|++.|+||.|+|.+++..
T Consensus        15 ~~~v~v~nLp~~~te~dl~~~F~~~~~-~~v~~~~~~~g~~~G~afVeF~~~~~a~~Al~~~~~~i~gR~I~V~~s~~~   92 (102)
T d1weza_          15 GHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNSTA   92 (102)
T ss_dssp             SCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEECCC
T ss_pred             CCEEEEeCCCCcCCHHHHHHHHhccCc-ceeeeEEecCCcceEEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEcCCC
Confidence            679999999999999999999999985 46666544 778899999999999999999999999999999999998754

>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.8e-16  Score=124.96  Aligned_cols=76  Identities=20%  Similarity=0.307  Sum_probs=68.5

Q ss_pred             CcEEEEeCCCCCCCHHHHHH----HHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q psy14559        166 RRTLVAINIEESVSPQELVD----FFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHS  240 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~----~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a  240 (405)
                      .+||||+|||+++++++|++    +|++||+|.+|++.. ++.++|||||+|.+.++|.+|+. +||..+.|++|+|.++
T Consensus         3 ~~tl~V~nLp~~~t~~dl~~~l~~~f~~~G~i~~i~~~~-~~~~~g~afV~F~~~~~A~~A~~~~~~~~~~g~~l~v~~a   81 (91)
T d1nu4a_           3 NHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR-SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYA   81 (91)
T ss_dssp             CSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH-HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHhcccccccceEEee-eccCCCceEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence            67999999999999998864    689999999998754 35578999999999999999998 9999999999999998


Q ss_pred             cC
Q psy14559        241 TQ  242 (405)
Q Consensus       241 ~~  242 (405)
                      +.
T Consensus        82 k~   83 (91)
T d1nu4a_          82 KT   83 (91)
T ss_dssp             SS
T ss_pred             CC
Confidence            73

>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=1.8e-16  Score=121.25  Aligned_cols=73  Identities=15%  Similarity=0.211  Sum_probs=62.9

Q ss_pred             cEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559         12 KVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus        12 ~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      |+|||+|||+++|+++|+++|++||+|.++++ +.  |..+++++|||||+|.+.++|+.|+.+++..+-++.+.|
T Consensus         1 cklfV~nLp~~~te~~l~~~F~~~G~i~~v~i-~~--d~~tg~~kG~aFV~f~~~~~a~~al~~~~~~i~Gr~i~V   73 (77)
T d1uawa_           1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLV-MR--DPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDP   73 (77)
T ss_dssp             CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEE-EC--CCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEE
T ss_pred             CEEEEeCCCCcCCHHHHHHHHHHhCCcceeee-ec--ccCCCCccceEEEEECCHHHHHHHHHcCCCEECCeEEEE
Confidence            68999999999999999999999999999999 44  345688999999999999999999987656555555444

>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.62  E-value=3.9e-16  Score=120.45  Aligned_cols=77  Identities=16%  Similarity=0.231  Sum_probs=63.2

Q ss_pred             CcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEeec
Q psy14559         11 TKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTPY   90 (405)
Q Consensus        11 ~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~~   90 (405)
                      .++|||+|||+++|+++|+++|++||+|.++++..   +..+++++|||||+|.+.++|+.|++.+|+..+++..+.+.+
T Consensus         2 ~t~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~---~~~~g~~~g~afV~f~~~~~A~~ai~~lng~~~~g~~l~v~~   78 (82)
T d1b7fa1           2 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMR---DYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSY   78 (82)
T ss_dssp             CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCE---ETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeeee---ecccCCccccceEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence            46899999999999999999999999999999943   234688999999999999999999975554445544444444

>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein d0
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=4.2e-16  Score=118.45  Aligned_cols=72  Identities=14%  Similarity=0.210  Sum_probs=62.4

Q ss_pred             EEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559         13 VVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus        13 tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      .|||+|||+++|+++|+++|++||+|.++++ +.  +..+++++|||||+|.+.++|+.|+++++..+.++.+.|
T Consensus         1 klfV~nl~~~~te~~l~~~F~~~G~i~~~~i-~~--d~~t~~~kg~afV~f~~~~~a~~Al~~~~~~l~Gr~i~V   72 (75)
T d1hd0a_           1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTL-KL--DPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDP   72 (75)
T ss_dssp             CEEEECCCTTCCHHHHHHHHHTTSCEEEEEC-CC--BTTTTBCCSEEEEEESSHHHHHHHHHTCCCCBTTBCCEE
T ss_pred             CEEEeCCCCcCCHHHHHHHHHhhcccccccc-cc--CCCCCCcCceEEEEECCHHHHHHHHhcCCCEECCCEEEe
Confidence            4899999999999999999999999999999 43  335788999999999999999999998777666655544

>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=5.7e-16  Score=122.67  Aligned_cols=82  Identities=15%  Similarity=0.180  Sum_probs=66.5

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      ....++|||+|||+++|+++|+++|++||+|.+|++ +.  +..++.++|||||+|.+.++|+.|++.+|...+++..+.
T Consensus         6 ~~~~~tlfV~nLp~~~t~~~l~~~F~~~G~v~~v~~-~~--d~~tg~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~   82 (93)
T d1x5ua1           6 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHM-PK--DRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIR   82 (93)
T ss_dssp             CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEEC-CB--CSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCE
T ss_pred             CCCCCEEEEeCCCCcCCHHHHHHHHHHhCCccccce-ee--cccccccccceEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence            456789999999999999999999999999999998 43  335788999999999999999999975555444444444


Q ss_pred             eecCC
Q psy14559         88 TPYNS   92 (405)
Q Consensus        88 v~~~~   92 (405)
                      +.++.
T Consensus        83 V~~A~   87 (93)
T d1x5ua1          83 VNKAS   87 (93)
T ss_dssp             EEETT
T ss_pred             EEEcC
Confidence            44443

>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=4.1e-16  Score=121.43  Aligned_cols=75  Identities=17%  Similarity=0.232  Sum_probs=67.2

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeE-EEEec-cCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNY-IRFCT-RENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHS  240 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~-i~i~~-~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a  240 (405)
                      ..+|||+|||+++++++|+++|+.||.|.. +.+.. +++.++|||||+|.+.++|.+|++ |||..++||+|+|+.+
T Consensus         9 ~~~l~v~nLp~~~~~~di~~~F~~~~~~~~~~~~~~~~~g~~~G~afV~f~~~e~a~~Ai~~l~~~~l~gr~i~v~l~   86 (86)
T d2cqpa1           9 PTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG   86 (86)
T ss_dssp             SEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred             CCEEEEECCCCCCCHHHHHHHHhhcccceeEEEEEeCCCCCcceEEEEEEcCcHHHHHHHHHcCCCEECCEEEEEEEC
Confidence            457999999999999999999999999876 44543 478899999999999999999998 9999999999999864

>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9 (SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 9 (SFRS9)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=6.8e-16  Score=123.48  Aligned_cols=73  Identities=19%  Similarity=0.205  Sum_probs=67.8

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeeccCC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHSTQS  243 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~~~  243 (405)
                      .++|||+|||+++++++|+++|++||+|.++.+.     .+|||||+|.+.++|++|++ |||..|.|+.|+|.+.+..
T Consensus        15 ~~~i~V~Nlp~~~~~~~L~~~F~~~G~v~~~~i~-----~~g~afV~f~~~~~a~~Ai~~lng~~~~g~~i~v~~~~~~   88 (98)
T d1wg4a_          15 DFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQ-----KDGMGMVEYLRKEDMEYALRKLDDTKFRSHEGETSYIRVY   88 (98)
T ss_dssp             SCEEEEECCCSSCCHHHHHHHHTTSSCEEEEEEE-----TTTEEEEEESSHHHHHHHHHHHSSEEEECTTSCEEEEEEE
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHhhccccccccc-----ccceEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEEecC
Confidence            6789999999999999999999999999999984     35899999999999999998 9999999999999988643

>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=9e-16  Score=120.83  Aligned_cols=80  Identities=14%  Similarity=0.140  Sum_probs=65.9

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      ....++|||+|||+++|+++|+++|+.||+|.+|+| +.+  ..+++++|||||+|.+.++|+.|+..++  .+++..+.
T Consensus         5 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i-~~d--~~tg~srG~aFV~f~~~~~a~~al~~~~--~l~Gr~i~   79 (90)
T d2cqga1           5 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQV-KKD--LKTGHSKGFGFVRFTEYETQVKVMSQRH--MIDGRWCD   79 (90)
T ss_dssp             CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEE-EEC--SSSCSEEEEEEEEESSHHHHHHHHHSCE--EETTEEEE
T ss_pred             CcCCCeEEEECCCCCCCHHHHHHHHHhhcccceeee-ccC--CCCcccCCEEEEEECCHHHHHHHHhcCC--ccCCEEeE
Confidence            346788999999999999999999999999999999 443  3578999999999999999999997543  45555555


Q ss_pred             eecCC
Q psy14559         88 TPYNS   92 (405)
Q Consensus        88 v~~~~   92 (405)
                      +.++.
T Consensus        80 v~~a~   84 (90)
T d2cqga1          80 CKLPN   84 (90)
T ss_dssp             EECCC
T ss_pred             EEeCC
Confidence            55443

>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hypothetical protein FLJ20273
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=7.8e-16  Score=122.45  Aligned_cols=76  Identities=17%  Similarity=0.181  Sum_probs=68.0

Q ss_pred             cEEEEeCCCCCCCHHHHHHHHhcCCC-eeEEEEecc---CCCCCcEEEEEECCHHHHHHHHH-hCC--ceeCCeeEEEee
Q psy14559        167 RTLVAINIEESVSPQELVDFFQKVGT-VNYIRFCTR---ENDTNKYALVEFSDQACVIPALK-LNG--TNLKGKTLQMFH  239 (405)
Q Consensus       167 rtvfV~NLp~~~tee~L~~~F~~~G~-I~~i~i~~~---~~~~rg~afV~F~~~e~A~~Al~-lng--~~l~g~~i~V~~  239 (405)
                      ++|||+|||.++|+++|+++|++||+ |.++.++.+   +++++|||||+|.+.++|..|++ |++  ..+.|++|+|.+
T Consensus         2 ~rLyV~nLp~~~te~~l~~~f~~~g~~i~~v~~~~~~~~~~~~rg~aFV~F~~~~~A~~Ai~~l~~~~~~~~g~~i~V~~   81 (96)
T d2disa1           2 CRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDW   81 (96)
T ss_dssp             EEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEE
T ss_pred             CEEEEcCCCCcCCHHHHHHHHHHhCCcceEEEEeeeccccccCCCeEEEEEcCHHHHHHHHHHHcCCCeEECCEEEEEEE
Confidence            57999999999999999999999996 899998754   46799999999999999999998 764  566899999999


Q ss_pred             ccC
Q psy14559        240 STQ  242 (405)
Q Consensus       240 a~~  242 (405)
                      ++.
T Consensus        82 A~p   84 (96)
T d2disa1          82 AEP   84 (96)
T ss_dssp             SCS
T ss_pred             cCC
Confidence            963

>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Peptidyl-prolyl cis-trans isomerase E, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=2.9e-16  Score=123.27  Aligned_cols=80  Identities=14%  Similarity=0.220  Sum_probs=67.2

Q ss_pred             CCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEee
Q psy14559         10 KTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTP   89 (405)
Q Consensus        10 ~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~   89 (405)
                      ..+||||+|||+++|+++|+++|+.||+|.+|++ +.  +..+++++|||||+|.+.++|+.|+...|...+++..+.+.
T Consensus         4 ~~~tlfV~nLp~~~te~~l~~~F~~~G~i~~v~i-~~--d~~~~~~kg~afV~f~~~~~A~~ai~~l~~~~i~g~~l~v~   80 (89)
T d2cqba1           4 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQI-PL--DYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN   80 (89)
T ss_dssp             CCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEEC-CC--CSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred             CCcEEEEeCCCCcCCHHHHHHHHhhCCeEEeccc-cc--ccccccccceeEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence            5689999999999999999999999999999999 43  33568899999999999999999997655555556666665


Q ss_pred             cCC
Q psy14559         90 YNS   92 (405)
Q Consensus        90 ~~~   92 (405)
                      ++.
T Consensus        81 ~a~   83 (89)
T d2cqba1          81 LAK   83 (89)
T ss_dssp             ECC
T ss_pred             EeC
Confidence            544

>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA binding protein 23
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=6e-16  Score=124.49  Aligned_cols=76  Identities=22%  Similarity=0.403  Sum_probs=65.5

Q ss_pred             CCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEe
Q psy14559         10 KTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVT   88 (405)
Q Consensus        10 ~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv   88 (405)
                      ..+||||+|||+++|+++|+++|+.||+|.+|+|+ .  +..+++++|||||+|.+.++|..|+.+++..+.++.+.+.
T Consensus        17 ~~~tifV~nL~~~~te~~l~~~F~~~G~V~~v~i~-~--d~~tg~~kG~afV~F~~~e~a~~A~~l~g~~~~G~~l~V~   92 (101)
T d2cq4a1          17 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRII-S--DRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQ   92 (101)
T ss_dssp             HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEC-C--SCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEE
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHcCCCeEEEEEee-e--cCCCccccceEEEEECCHHHHHHHHHHCCCEECCEEEEEE
Confidence            35899999999999999999999999999999994 3  3357889999999999999999999877766666665554

>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=9.9e-16  Score=122.54  Aligned_cols=83  Identities=13%  Similarity=0.202  Sum_probs=66.9

Q ss_pred             cCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCcccccee
Q psy14559          6 VAPVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRAL   85 (405)
Q Consensus         6 ~~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~   85 (405)
                      .+....++|||+|||+++|+++|+++|+.||+|.+|++ +.  +..+++++|||||+|.+.++|+.|++.+|...+++..
T Consensus         3 ~~~~~~~~lfV~nL~~~~t~~~l~~~F~~~g~v~~v~i-~~--d~~tg~~~g~afV~f~~~~~a~~A~~~l~g~~~~gr~   79 (99)
T d1whwa_           3 SGSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHY-PI--DSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRM   79 (99)
T ss_dssp             CCCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEEC-CC--CTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCE
T ss_pred             CCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCceeeee-cc--cccccccCcceEEEECCHHHHHHHHHHcCCCEECCEE
Confidence            34566788999999999999999999999999999999 43  3357889999999999999999999755544444444


Q ss_pred             EEeecC
Q psy14559         86 VVTPYN   91 (405)
Q Consensus        86 ~vv~~~   91 (405)
                      +.+.++
T Consensus        80 i~V~~a   85 (99)
T d1whwa_          80 LHVLPS   85 (99)
T ss_dssp             EEEEEC
T ss_pred             EEEEEC
Confidence            444443

>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.3e-15  Score=116.58  Aligned_cols=75  Identities=17%  Similarity=0.215  Sum_probs=64.8

Q ss_pred             CcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEe
Q psy14559         11 TKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVT   88 (405)
Q Consensus        11 ~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv   88 (405)
                      .++|||+|||+++|+++|+++|++||.|..+++..   +..++.++|||||+|.+.+++..|+++++..+.++.+.|-
T Consensus         2 ~r~lfV~nLp~~~te~~l~~~F~~~G~i~~~~~~~---~~~~~~~~g~afV~f~~~e~~~~al~~~~~~l~Gr~i~V~   76 (79)
T d1l3ka2           2 VKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMT---DRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVR   76 (79)
T ss_dssp             CSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEE---CTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEE
T ss_pred             CCEEEECCCCCcCCHHHHHHHHHHhcccccccccc---CCCCcccccEEEEEEcCHHHHHHHHHhCCCEECCEEEEEE
Confidence            58999999999999999999999999999999943   2346789999999999999999999987776666665553

>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=6.6e-16  Score=120.23  Aligned_cols=78  Identities=12%  Similarity=0.185  Sum_probs=64.7

Q ss_pred             cEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEeecC
Q psy14559         12 KVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTPYN   91 (405)
Q Consensus        12 ~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~~~   91 (405)
                      .+|||+|||+++|+++|+++|+.||+|.+|++. .  |..+++++|||||+|.+.++|..|+..+|+..+++..+.+.++
T Consensus         2 ~rlfV~nlp~~~te~~l~~~F~~~G~v~~v~i~-~--d~~tg~~rg~aFV~f~~~~~A~~a~~~l~~~~l~g~~l~V~~A   78 (85)
T d2u2fa_           2 HKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLV-K--DSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA   78 (85)
T ss_dssp             CCEEEETCCSSCCSHHHHHHHTSSSCEEEEEEE-C--CCSSSCCCCEEEEEESSSHHHHHHHHTSSSCCCSSSCCEEEEC
T ss_pred             CEEEEECCCCCCCHHHHHHHHHhcCccceEEee-c--cccccccceeEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence            579999999999999999999999999999994 3  3457899999999999999999999865555554555555544


Q ss_pred             C
Q psy14559         92 S   92 (405)
Q Consensus        92 ~   92 (405)
                      .
T Consensus        79 ~   79 (85)
T d2u2fa_          79 S   79 (85)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Lupus LA protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=9.9e-16  Score=119.23  Aligned_cols=75  Identities=13%  Similarity=0.162  Sum_probs=65.7

Q ss_pred             CCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEe
Q psy14559         10 KTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVT   88 (405)
Q Consensus        10 ~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv   88 (405)
                      ..++|||+|||+++|+++|+++|+.||+|.+|++ +.+.   +++++|||||+|.+.++|+.|+++++..+.++.+.+.
T Consensus         5 ~~rtvfV~nlp~~~te~~l~~~F~~~G~v~~v~l-~~~~---~~~~kG~afV~f~~~e~a~~al~~~~~~~~g~~l~v~   79 (85)
T d1zh5a2           5 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQM-RRTL---HKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLIL   79 (85)
T ss_dssp             HTTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEE-EECT---TCCEEEEEEEEESCHHHHHHHHTCCCCEETTEECEEE
T ss_pred             CcCEEEEECCCCCCCHHHHHHHHHHhccccccee-eeec---cCCcceEEEEEEcCHHHHHHHHHHCCCEECCEEEEEE
Confidence            4689999999999999999999999999999999 4432   5788999999999999999999987777777766654

>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 8
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.61  E-value=1e-15  Score=119.82  Aligned_cols=81  Identities=17%  Similarity=0.195  Sum_probs=65.5

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      ..+.++|||+|||+++|+++|+++|+.||+|.+|++..   +..+++++|||||+|.+.++|+.|+..+|+..+++..+.
T Consensus         4 s~~~~~l~V~nL~~~~t~~~l~~~F~~~G~i~~v~i~~---d~~tg~~~g~afV~f~~~~~A~~A~~~lng~~l~g~~l~   80 (88)
T d1rk8a_           4 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNL---DRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ   80 (88)
T ss_dssp             CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE---CTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCcccccccc---cccccccccceeEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence            34568999999999999999999999999999999943   334688999999999999999999975444445555555


Q ss_pred             eecC
Q psy14559         88 TPYN   91 (405)
Q Consensus        88 v~~~   91 (405)
                      +.|+
T Consensus        81 V~~a   84 (88)
T d1rk8a_          81 VDWC   84 (88)
T ss_dssp             EEES
T ss_pred             EEEe
Confidence            5554

>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein D0 (AUF1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=4.6e-16  Score=118.34  Aligned_cols=70  Identities=19%  Similarity=0.353  Sum_probs=60.6

Q ss_pred             EEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCcccccee
Q psy14559         13 VVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRAL   85 (405)
Q Consensus        13 tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~   85 (405)
                      .|||+|||+++|+++|+++|++||+|.+|+| +.+  ..+++++|||||+|.+.++|+.|+..++..+.++.+
T Consensus         1 klfVgnLp~~~te~~l~~~F~~~G~I~~v~i-~~d--~~t~~~rG~~FV~f~~~~~a~~al~~~~~~i~g~~i   70 (75)
T d1x0fa1           1 KIFVGGLSPDTPEEKIREYFGGFGEVESIEL-PMD--NKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKC   70 (75)
T ss_dssp             EEEEESCCSSCCHHHHHHHHHHHSCEEEEEC-CCC--TTTCCTTCCEEEEESSSHHHHHHTTCSSCCBTTBCC
T ss_pred             CEEEcCCCCCCCHHHHHHHHHHhCCcccccc-ccc--ccccccccEEEEEECCHHHHHHHHhhCCCEECCEEe
Confidence            5899999999999999999999999999999 443  357899999999999999999999876665555443

>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.60  E-value=9.6e-16  Score=119.04  Aligned_cols=79  Identities=8%  Similarity=0.145  Sum_probs=63.2

Q ss_pred             EEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEeecCC
Q psy14559         14 VQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTPYNS   92 (405)
Q Consensus        14 LfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~~~~   92 (405)
                      |||+|||+++|+++|+++|++||+|.+|++.........+.++|||||+|.+.++|..|+..+|...+++..+.+.++.
T Consensus         1 LfV~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~~~kG~afV~f~~~~~A~~A~~~~~~~~~~g~~i~V~~a~   79 (85)
T d2cpfa1           1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISE   79 (85)
T ss_dssp             EEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECSS
T ss_pred             CEEcCCCCCCCHHHHHHHHHHhCCccccceecccccccccccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence            7999999999999999999999999999994432212234579999999999999999997655555566666666544

>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein 2, PTBP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=2.3e-15  Score=117.70  Aligned_cols=74  Identities=16%  Similarity=0.239  Sum_probs=67.6

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH---hCCceeCCeeEEEeeccC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK---LNGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~---lng~~l~g~~i~V~~a~~  242 (405)
                      .++|||+|||+++++++|+++|++||.|.++++..    .++||||+|.+.++|.+|+.   +++..+.|++|+|.+++.
T Consensus         8 s~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~----~~~~afV~f~~~e~A~~a~~~~~~~~~~~~g~~l~v~~sk~   83 (88)
T d2cq1a1           8 SRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLK----GKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNH   83 (88)
T ss_dssp             CSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEET----TTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHhcccccccccccc----cceEEEEEeCCHHHHHHHHHHHccCCCccCCCEEEEEECCC
Confidence            78999999999999999999999999999999853    46899999999999999986   467899999999999974


Q ss_pred             C
Q psy14559        243 S  243 (405)
Q Consensus       243 ~  243 (405)
                      .
T Consensus        84 ~   84 (88)
T d2cq1a1          84 K   84 (88)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.60  E-value=9.4e-16  Score=121.63  Aligned_cols=84  Identities=18%  Similarity=0.283  Sum_probs=68.6

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhcc-CCccccceeE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLT-NTVFIDRALV   86 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~-n~~~~~~~~~   86 (405)
                      ...+++|||+|||+++|+++|+++|+.||.|.+|+| +.+. ..+++++|||||+|.+.++|..|+..+ |...+++..+
T Consensus         5 ~~~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i-~~~~-~~~g~~rg~afV~f~~~~~A~~Ai~~l~~~~~~~Gr~l   82 (94)
T d2cpha1           5 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRL-PKKM-TGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL   82 (94)
T ss_dssp             SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEC-CCCC-SSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCceEEEE-Eecc-ccCCCcccEEEEEECCHHHHHHHHHHccCCcEECCEEE
Confidence            346788999999999999999999999999999999 4432 235889999999999999999999643 6555555666


Q ss_pred             EeecCCC
Q psy14559         87 VTPYNSG   93 (405)
Q Consensus        87 vv~~~~~   93 (405)
                      .+.++..
T Consensus        83 ~V~~A~~   89 (94)
T d2cpha1          83 VLEWADS   89 (94)
T ss_dssp             EEEECCC
T ss_pred             EEEEcCC
Confidence            6666654

>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.60  E-value=4.7e-16  Score=119.74  Aligned_cols=78  Identities=15%  Similarity=0.164  Sum_probs=59.8

Q ss_pred             CcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEeec
Q psy14559         11 TKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTPY   90 (405)
Q Consensus        11 ~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~~   90 (405)
                      .+||||+|||+++|+++|+++|+.||.|..+.++...   ..++++|||||+|.+.++|+.|++.+|+..+++..+.+.+
T Consensus         1 d~tl~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~---~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~i~V~~   77 (81)
T d2ghpa1           1 ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSL---RFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKV   77 (81)
T ss_dssp             SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC----------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred             CcEEEEECCCCcCCHHHHHHHHHHhCcEEeeeeeccc---ccccccceeEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence            4799999999999999999999999999988774432   3578999999999999999999975555555555555544


Q ss_pred             C
Q psy14559         91 N   91 (405)
Q Consensus        91 ~   91 (405)
                      +
T Consensus        78 a   78 (81)
T d2ghpa1          78 S   78 (81)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 3 subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.5e-15  Score=119.45  Aligned_cols=82  Identities=11%  Similarity=0.203  Sum_probs=67.8

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      ..+.++|||+|||+++|+++|+++|+.||+|.+|++ +.+  ..++.++|||||+|.+.++|..|++.+|+..+++..+.
T Consensus         5 ~~~~~~i~V~nLp~~~t~~~l~~~f~~~G~v~~v~i-~~d--~~t~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~   81 (90)
T d2cq0a1           5 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYL-AKD--KTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILN   81 (90)
T ss_dssp             CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEE-EEC--SSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred             CCCCCEEEEECCCCCCCHHHHHHHHHHhcccccccc-ccc--ccccccccceeEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence            446789999999999999999999999999999999 443  34688999999999999999999976565555555555


Q ss_pred             eecCC
Q psy14559         88 TPYNS   92 (405)
Q Consensus        88 v~~~~   92 (405)
                      +.++.
T Consensus        82 v~~ak   86 (90)
T d2cq0a1          82 VEWAK   86 (90)
T ss_dssp             EEESS
T ss_pred             EEeee
Confidence            55543

>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.3e-15  Score=117.31  Aligned_cols=77  Identities=18%  Similarity=0.309  Sum_probs=63.1

Q ss_pred             cEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEeecC
Q psy14559         12 KVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTPYN   91 (405)
Q Consensus        12 ~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~~~   91 (405)
                      .+|||+|||+++|+++|+++|++||+|.+|++..   +...+.++|||||+|.+.++|+.|++.+|+..+++..+.+.++
T Consensus         3 t~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~---~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~A   79 (82)
T d1fxla1           3 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVR---DKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA   79 (82)
T ss_dssp             SEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEE---CTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHhCCccccccee---eccCCCceeeEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence            4699999999999999999999999999999943   3346789999999999999999999754544555555555543

>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=2.2e-17  Score=130.05  Aligned_cols=77  Identities=19%  Similarity=0.352  Sum_probs=68.4

Q ss_pred             cEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEec-------cCCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEee
Q psy14559        167 RTLVAINIEESVSPQELVDFFQKVGTVNYIRFCT-------RENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFH  239 (405)
Q Consensus       167 rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~-------~~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~  239 (405)
                      |+|||+|||+++|+++|+++|++||.|..+.+..       +++.++|||||+|.+.++|+.|+.|||..+.|+.|+|+.
T Consensus         2 RrlyVgNLp~~~te~~l~~~F~~~g~~~~~~~~~~~~~~~~~~~~~kg~afV~f~~~e~a~~a~~l~g~~~~Gr~l~V~r   81 (90)
T d1u2fa_           2 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRR   81 (90)
T ss_dssp             CEEEECSCCTTCCTTHHHHHHHHHHTTTTSCCSSSCSEEECCEETTTTEEEEEESSCTTTTTGGGGSSCCSSSSCCCCBC
T ss_pred             CEEEEcCCCCccchHHHHHHHHhhCcEEEEEEeccceeeecccCCCceEEEEEeCCHHHHHHHHhhCCcEECCEEEEECC
Confidence            6899999999999999999999999887776531       246789999999999999999999999999999999987


Q ss_pred             ccCC
Q psy14559        240 STQS  243 (405)
Q Consensus       240 a~~~  243 (405)
                      ++..
T Consensus        82 ~k~~   85 (90)
T d1u2fa_          82 PHDY   85 (90)
T ss_dssp             TTCC
T ss_pred             CCCC
Confidence            6643

>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1e-15  Score=125.34  Aligned_cols=76  Identities=17%  Similarity=0.210  Sum_probs=68.6

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEE--eccCCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeecc
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRF--CTRENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHST  241 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i--~~~~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~  241 (405)
                      ..+|||+|||+++|+++|++||+.||.+..+.+  ..++|.++|||||+|.+.++|.+|+.|||..|+||.|.|..+.
T Consensus        18 ~~~i~v~nLp~~~t~~di~~~F~~~g~~~~~~~~~~~~~g~~~G~afVeF~~~e~a~~al~~~~~~i~gR~i~V~~~~   95 (112)
T d1wela1          18 GFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPIT   95 (112)
T ss_dssp             CCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEEC
T ss_pred             CeEEEEecCCCcCcHHHHhhHHhhccccccceeeecCcccceeeEEEEEECCHHHHHHHHHcCCCcCCCEEEEEEEcC
Confidence            679999999999999999999999999876433  3447889999999999999999999999999999999998764

>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.7e-15  Score=119.09  Aligned_cols=80  Identities=15%  Similarity=0.267  Sum_probs=64.7

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      ..+.+||||+|||+++|+++|+++|+.||+|.+|++ +.+.    ...+|||||+|.+.++|..|+..+++..+++..+.
T Consensus         5 ~~~~~tl~V~nLp~~~te~~l~~~F~~~G~i~~v~i-~~d~----~~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~i~   79 (90)
T d2cqia1           5 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKM-ITEH----TSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVK   79 (90)
T ss_dssp             SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEE-ECCC----CSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred             CCCCCEEEEECCCCCCCHHHHHHHHHhcCCceeeee-eccc----CccceeeEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence            456789999999999999999999999999999999 4333    23489999999999999999976555555555555


Q ss_pred             eecCC
Q psy14559         88 TPYNS   92 (405)
Q Consensus        88 v~~~~   92 (405)
                      +.++.
T Consensus        80 v~~a~   84 (90)
T d2cqia1          80 VNWAT   84 (90)
T ss_dssp             EEECC
T ss_pred             EEEcC
Confidence            55544

>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.59  E-value=1.4e-15  Score=115.61  Aligned_cols=72  Identities=14%  Similarity=0.160  Sum_probs=60.7

Q ss_pred             cEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEe
Q psy14559         12 KVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVT   88 (405)
Q Consensus        12 ~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv   88 (405)
                      .||||+|||+++|+++|+++|+.||+|.+|++.. ++    +..++||||+|.+.++|+.|+.+++..+.++.+.|.
T Consensus         1 Ttv~V~nlp~~~t~~~l~~~F~~~G~I~~v~~~~-~~----~~~~~~afV~F~~~~~a~~Al~~~~~~i~g~~i~V~   72 (75)
T d2ghpa2           1 TTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVAD-SL----KKNFRFARIEFARYDGALAAITKTHKVVGQNEIIVS   72 (75)
T ss_dssp             CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEE-CT----TSSSEEEEEEESSHHHHHHHHTTTTCEETTEECEEE
T ss_pred             CEEEEECCCCCCCHHHHHHHHhcCCceEEEEEEe-ec----cccceEEEEEEcchHHhHHHHHhcCcEECCEEEEEE
Confidence            3899999999999999999999999999999943 33    234679999999999999999987776666655554

>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins A2/B1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.4e-15  Score=122.77  Aligned_cols=76  Identities=12%  Similarity=0.126  Sum_probs=64.1

Q ss_pred             CcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEeec
Q psy14559         11 TKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTPY   90 (405)
Q Consensus        11 ~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~~   90 (405)
                      .++|||+|||+++|+++|+++|++||+|.++.| +.  |..++.++|||||+|.+.++|+.|+++++..+.+ ..+.+..
T Consensus        20 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~~~i-~~--d~~~~~~kg~aFV~f~~~~~a~~al~~~~~~l~G-~~i~V~~   95 (103)
T d1x4ba1          20 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVV-MR--DPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDG-RVVEPKR   95 (103)
T ss_dssp             HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEE-EC--CTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETT-EEEEEEC
T ss_pred             CCEEEEeCCCCcCCHHHHHHHHHhhCcccceee-cc--cccCCCccCeEEEEECCHHHHHHHHHhCCCeECC-EEEEEEE
Confidence            489999999999999999999999999999999 54  3356789999999999999999999886665544 4444443

>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Putative RNA-binding protein 15B, Rbm15b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.58  E-value=2.4e-15  Score=119.84  Aligned_cols=73  Identities=16%  Similarity=0.287  Sum_probs=67.0

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCC--eeEEEeeccC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKG--KTLQMFHSTQ  242 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g--~~i~V~~a~~  242 (405)
                      .++|||+|||+++++++|+++|++||.|..+++.    +.++||||+|.+.++|..|++ |||..|.|  ++|+|++++.
T Consensus        17 s~tl~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~----~~~~~afV~f~~~~~A~~A~~~l~~~~i~g~~~~l~v~~ak~   92 (97)
T d1whya_          17 TTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHV----KGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKS   92 (97)
T ss_dssp             CSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEEC----SSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCC
T ss_pred             CCEEEEcCCCCCCCHHHHHHHHHhhcccceEeee----ccccEEEeccCCHHHHHHHHHHhCCCEeCCCceEEEEEeCCC
Confidence            5789999999999999999999999999999984    347899999999999999998 99999987  4899999873

>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=3.2e-15  Score=118.24  Aligned_cols=84  Identities=13%  Similarity=0.228  Sum_probs=67.5

Q ss_pred             cccCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccc
Q psy14559          4 DTVAPVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDR   83 (405)
Q Consensus         4 ~~~~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~   83 (405)
                      ++......++|||+|||+++|+++|+++|+.||+|.+|++ ..+.    +.++|||||+|.+.++|..|+..+|...+++
T Consensus         4 ~~~~~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~v~~v~~-~~~~----~~~kg~afV~f~~~~~a~~Ai~~l~~~~~~g   78 (93)
T d2cq3a1           4 NSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEI-IFNE----RGSKGFGFVTFENSADADRAREKLHGTVVEG   78 (93)
T ss_dssp             CSCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEE-ECCT----TTTCCEEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred             CCCCCCCCCEEEEECCCCCCCHHHHHHHHhhcceeeeccc-cccc----cCCcceeEEEECCHHHHHHHHHHcCCCEECC
Confidence            3445667789999999999999999999999999999999 4333    3468999999999999999997655555555


Q ss_pred             eeEEeecCC
Q psy14559         84 ALVVTPYNS   92 (405)
Q Consensus        84 ~~~vv~~~~   92 (405)
                      ..+.+.++.
T Consensus        79 ~~l~V~~A~   87 (93)
T d2cq3a1          79 RKIEVNNAT   87 (93)
T ss_dssp             EECEEEECC
T ss_pred             EEEEEEecC
Confidence            555555544

>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.5e-15  Score=118.10  Aligned_cols=70  Identities=13%  Similarity=0.188  Sum_probs=60.0

Q ss_pred             CCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhc-cCCcccc
Q psy14559         10 KTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHL-TNTVFID   82 (405)
Q Consensus        10 ~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~-~n~~~~~   82 (405)
                      ..++|||+|||+++|+++|+++|++||+|.+++++.   +..++.++|||||+|.+.++|..|++. ++..+.+
T Consensus         5 k~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~---d~~~g~~kg~afV~f~~~~~a~~Ai~~lng~~~~G   75 (85)
T d1fxla2           5 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILV---DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSG   75 (85)
T ss_dssp             TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE---CTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTT
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccc---ccccccCCCeeEEEEcCHHHHHHHHHHhCCCEeCC
Confidence            567899999999999999999999999999999944   234688999999999999999999964 4554443

>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear factor Aly
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.58  E-value=1.2e-15  Score=116.64  Aligned_cols=71  Identities=14%  Similarity=0.129  Sum_probs=59.6

Q ss_pred             EEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhc-cCCccccceeEE
Q psy14559         13 VVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHL-TNTVFIDRALVV   87 (405)
Q Consensus        13 tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~-~n~~~~~~~~~v   87 (405)
                      .|||+|||+++|+++|+++|++||+|.++++ +.++   +++++|||||+|.+.++|+.|++. ++..+.++.+.+
T Consensus         2 rl~V~nLp~~~~~~~l~~~F~~~G~v~~~~i-~~~~---~g~~~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~l~V   73 (78)
T d1no8a_           2 KLLVSNLDFGVSDADIQELFAEFGTLKKAAV-HYDR---SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNI   73 (78)
T ss_dssp             EEEEESCCTTCCHHHHHHHHHHHSCEEEEEE-SCSS---CCCSCCEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred             EEEEECCCCCCCHHHHHHHHHHhCCCeEEEE-EEee---ccccceeEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence            5999999999999999999999999999999 3332   578899999999999999999975 455555554443

>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cleavage stimulation factor, 64 kda subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=7.7e-16  Score=124.24  Aligned_cols=80  Identities=23%  Similarity=0.275  Sum_probs=64.9

Q ss_pred             CCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhcc-CCccccceeEE
Q psy14559          9 VKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLT-NTVFIDRALVV   87 (405)
Q Consensus         9 ~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~-n~~~~~~~~~v   87 (405)
                      ...++|||+|||+++|+++|+++|+.||+|.+|++. .++  .+++++|||||+|.+.++|+.|+..+ +..+.++.+. 
T Consensus         6 ~~~rtl~V~nLp~~~te~~l~~~f~~~G~i~~v~i~-~~~--~tg~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~i~-   81 (104)
T d1p1ta_           6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLV-YDR--ETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALR-   81 (104)
T ss_dssp             HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEE-EET--TTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBE-
T ss_pred             CCCCEEEEECCCCcCCHHHHHHhhhccccccccccc-ccc--ceeccCCceEEEECCHHHHHHHHHHcCCCEECCEEEE-
Confidence            346899999999999999999999999999999994 332  46889999999999999999999754 4555555544 


Q ss_pred             eecCC
Q psy14559         88 TPYNS   92 (405)
Q Consensus        88 v~~~~   92 (405)
                      +.++.
T Consensus        82 V~~a~   86 (104)
T d1p1ta_          82 VDNAA   86 (104)
T ss_dssp             EEETT
T ss_pred             EEECC
Confidence            45444

>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Pre-mRNA branch site protein p14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=2.4e-15  Score=123.16  Aligned_cols=78  Identities=18%  Similarity=0.274  Sum_probs=63.3

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      +..+++|||+|||.++|+++|+++|+.||+|.+|++ +.     ++.++|||||+|.+.++|..|++.+|+..+++..+.
T Consensus         4 p~~~r~l~V~nLp~~~te~~l~~~F~~~G~v~~i~~-~~-----~~~~kG~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~   77 (114)
T d2f9da1           4 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRV-GN-----TPETRGTAYVVYEDIFDAKNACDHLSGFNVCNRYLV   77 (114)
T ss_dssp             TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEE-EC-----STTTTTEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred             cCCCCEEEEECCCCCCCHHHHHHHHhhcCCeEeecc-cc-----cCCcCCeEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence            456789999999999999999999999999999999 32     245689999999999999999965554444444445


Q ss_pred             eecC
Q psy14559         88 TPYN   91 (405)
Q Consensus        88 v~~~   91 (405)
                      +.++
T Consensus        78 V~~a   81 (114)
T d2f9da1          78 VLYY   81 (114)
T ss_dssp             EEEC
T ss_pred             EEEc
Confidence            5444

>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.58  E-value=9.5e-16  Score=119.55  Aligned_cols=79  Identities=8%  Similarity=0.221  Sum_probs=61.0

Q ss_pred             CCcEEEEcCCCCCCC-HHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEe
Q psy14559         10 KTKVVQVANIAPQAT-RDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVT   88 (405)
Q Consensus        10 ~~~tLfVgNLp~~vT-eedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv   88 (405)
                      +.++|||+|||+++| +++|+++|++||+|.+|+|...  +..+++++|||||+|.+.++|+.|+++++..+.++. +.+
T Consensus         3 e~~~l~V~nLp~~~t~ed~l~~~F~~~G~i~~v~i~~~--~~~~~~~kg~afV~f~~~~~a~~Al~~n~~~~~gr~-l~V   79 (86)
T d2ghpa3           3 EGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAG--QKEHSFNNCCAFMVFENKDSAERALQMNRSLLGNRE-ISV   79 (86)
T ss_dssp             TTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSC--CC---CCCEEEEEEESSHHHHHHHGGGTTEEETTEE-EEE
T ss_pred             CCCEEEEECCCCCcccHHHHHHHHHhhhhccceeeecc--cCCccccceeeeEEECCHHHHHHHHhcCCCEECCEE-EEE
Confidence            578999999999986 5669999999999999998432  224678899999999999999999986555555544 444


Q ss_pred             ecC
Q psy14559         89 PYN   91 (405)
Q Consensus        89 ~~~   91 (405)
                      .++
T Consensus        80 ~~a   82 (86)
T d2ghpa3          80 SLA   82 (86)
T ss_dssp             EEC
T ss_pred             EEc
Confidence            443

>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=2.8e-15  Score=117.52  Aligned_cols=78  Identities=9%  Similarity=0.118  Sum_probs=64.1

Q ss_pred             CCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEee
Q psy14559         10 KTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTP   89 (405)
Q Consensus        10 ~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~   89 (405)
                      ...+|||+|||+++|+++|+++|+.||.|.++++ ..+.    +.++|||||+|.+.++|+.|++.+|+..+++..+.+.
T Consensus         7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i-~~~~----~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~V~   81 (89)
T d1cvja2           7 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV-VCDE----NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG   81 (89)
T ss_dssp             TTTEEEEESCCSSCCHHHHHHHHHTTSCEEEEEE-CCBT----TBCCSCEEEEESCHHHHHHHTTSSSEEEETTEEEEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceEEEE-Eeec----CCCcceeEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence            4568999999999999999999999999999999 3333    3468999999999999999997666666666555555


Q ss_pred             cCC
Q psy14559         90 YNS   92 (405)
Q Consensus        90 ~~~   92 (405)
                      ++.
T Consensus        82 ~a~   84 (89)
T d1cvja2          82 RFK   84 (89)
T ss_dssp             ECC
T ss_pred             ECC
Confidence            443

>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=2e-15  Score=122.67  Aligned_cols=76  Identities=26%  Similarity=0.279  Sum_probs=68.3

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCcee--CCeeEEEeeccC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNL--KGKTLQMFHSTQ  242 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l--~g~~i~V~~a~~  242 (405)
                      ..+|||+|||+++|+++|+++|++||.|.+|.+..+  +++|||||+|.+.++|..|+. |||..|  .|++|+|.+++.
T Consensus         7 ~~~v~V~NL~~~vte~~L~~~F~~~G~i~~~~i~~~--~~~g~aFV~f~~~e~A~~Ai~~ln~~~l~~~~~~l~v~~s~~   84 (108)
T d2adba1           7 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK--NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL   84 (108)
T ss_dssp             EEEEESCSCCSTTHHHHHHHHHTTTSCEEEEEEEEE--TTEEEEEEEESCHHHHHHHHHHHHSCCSSTTCCCCEEEECSS
T ss_pred             eEEEEEeCcCCCCCHHHHHHHHccCCcEEEEEEEee--CCCCeEEEEECCHHHHHHHHHHHCCCEeccCCcEEEEEecCC
Confidence            458999999999999999999999999999998754  358999999999999999998 999988  578999998864


Q ss_pred             C
Q psy14559        243 S  243 (405)
Q Consensus       243 ~  243 (405)
                      .
T Consensus        85 ~   85 (108)
T d2adba1          85 T   85 (108)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CUG triplet repeat RNA-binding protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=3.2e-15  Score=120.26  Aligned_cols=82  Identities=9%  Similarity=0.108  Sum_probs=66.6

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      .++.++|||+|||+++|+++|+++|+.||.|.++++..   +..++.++|||||+|.+.++|+.|+..+|+..+++..+.
T Consensus        15 ~p~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~---~~~~g~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~~i~   91 (102)
T d2cpza1          15 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFI---DKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLK   91 (102)
T ss_dssp             CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEE---CSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhhccccccceee---ecccCCCccceEEEeCCHHHHHHHHHHhCCCEECCEEEE
Confidence            34567899999999999999999999999999999843   335688999999999999999999965555545555555


Q ss_pred             eecCC
Q psy14559         88 TPYNS   92 (405)
Q Consensus        88 v~~~~   92 (405)
                      +.++.
T Consensus        92 V~~a~   96 (102)
T d2cpza1          92 VQLKR   96 (102)
T ss_dssp             EECCC
T ss_pred             EEEeC
Confidence            55544

>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.57  E-value=3.5e-15  Score=115.93  Aligned_cols=70  Identities=17%  Similarity=0.244  Sum_probs=59.6

Q ss_pred             CCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhc-cCCcccc
Q psy14559         10 KTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHL-TNTVFID   82 (405)
Q Consensus        10 ~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~-~n~~~~~   82 (405)
                      ...+|||+|||+++|+++|+++|++||+|.++++.. +  ..+++++|||||+|.+.++|..|++. ++..+.+
T Consensus         5 ~~t~lfV~nlp~~~te~~l~~~F~~~G~i~~~~~~~-d--~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g   75 (85)
T d1b7fa2           5 KDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILR-D--KLTGRPRGVAFVRYNKREEAQEAISALNNVIPEG   75 (85)
T ss_dssp             TTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEE-C--TTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTT
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhhCCEeeeeeec-c--cccccCceeEEEEECCHHHHHHHHHHHCCCEeCC
Confidence            456799999999999999999999999999999943 2  24688999999999999999999965 4444443

>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=2.3e-15  Score=132.70  Aligned_cols=148  Identities=11%  Similarity=0.133  Sum_probs=105.5

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeeccCC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR--ENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHSTQS  243 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~--~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a~~~  243 (405)
                      -|+|||+|||+++|+++|+++|++||.|.++.++.+  ++.++|||||+|.+.++|.+|+.+++..+.++.+.+......
T Consensus         6 ~r~lfV~nLp~~~te~~L~~~F~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~   85 (183)
T d1u1qa_           6 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSR   85 (183)
T ss_dssp             HHEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEECCCT
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHcCCEEEEEeeecccCCCccCceecccCCHHHHHHHHHhcCCcccccchhhhhhhhc
Confidence            479999999999999999999999999999999765  678899999999999999999998899999999888765411


Q ss_pred             CCCCCCCChHHHHHHHHHHHHHHHHhhhhhhhccCcccCcccccccCCCCCceEEEEEEEeeehhhHHHhhhCCCcceee
Q psy14559        244 IQKPEAKSNEAAQREIEEAMSRVKEAQNMISAAIDPVIGILSKDKKKSHSPVRHLVIVLIVVDVALDLALEIGDDLEVVV  323 (405)
Q Consensus       244 ~~~p~~~~~~~~~~e~~~~~k~~~~~~~~~s~~~ep~~~~~~~dk~~~~s~~~~~~~~~~~~d~~~~~al~~~~~~~~~~  323 (405)
                      ....                                        ........+.++++.+..+..-+...+       ..
T Consensus        86 ~~~~----------------------------------------~~~~~~~~~~i~V~~lp~~~te~~L~~-------~f  118 (183)
T d1u1qa_          86 EDSQ----------------------------------------RPGAHLTVKKIFVGGIKEDTEEHHLRD-------YF  118 (183)
T ss_dssp             TGGG----------------------------------------STTTTCCCSEEEEECCCTTCCHHHHHH-------HH
T ss_pred             cccc----------------------------------------ccccccccceeEEccCCCcCCHHHHhh-------hh
Confidence            1000                                        001112223456555554444222222       23


Q ss_pred             eeecccccc--c---cccccceEEEEEecCcccccccCCCCC
Q psy14559        324 RDVGHVREE--D---QDHVVDVLCLVIVRDPHVARDVHAPDH  360 (405)
Q Consensus       324 ~~~g~v~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (405)
                      ..+|.|...  .   .....-|.|.|.|.|+++|..+..-+|
T Consensus       119 ~~~G~v~~~~i~~~~~~~~~~g~~fV~f~~~e~A~~Al~~~~  160 (183)
T d1u1qa_         119 EQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKY  160 (183)
T ss_dssp             GGGSCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHTSSC
T ss_pred             ccCCceeeeeeecccccCccceeEEEEECCHHHHHHHHHhCC
Confidence            344555542  2   223456899999999999998765554

>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein L-like {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein L-like
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.57  E-value=1e-14  Score=117.60  Aligned_cols=74  Identities=23%  Similarity=0.285  Sum_probs=67.7

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-h--CCceeCCeeEEEeeccC
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-L--NGTNLKGKTLQMFHSTQ  242 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-l--ng~~l~g~~i~V~~a~~  242 (405)
                      .++|||+|||+++|+++|+++|++||.|..+.+.    +.+++|||+|.+.++|..|+. |  ++..++|++|+|.+++.
T Consensus        15 s~~l~v~nlp~~~te~~l~~~F~~fG~I~~~~~~----~~k~~AfV~f~~~e~A~~ai~~~~~~~~~~~g~~l~v~~s~~   90 (104)
T d1wexa_          15 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMM----PFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTS   90 (104)
T ss_dssp             CSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEE----TTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSS
T ss_pred             CCEEEEeCCCCCCCHHHHHHhhhhcccceEEEEE----ecceeEEEEeCCHHHHHHHHHHHcCCCcEEeeEEEEEEEcCC
Confidence            6799999999999999999999999999999985    357899999999999999997 5  66788999999999975


Q ss_pred             C
Q psy14559        243 S  243 (405)
Q Consensus       243 ~  243 (405)
                      .
T Consensus        91 ~   91 (104)
T d1wexa_          91 K   91 (104)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d1x4fa1 d.58.7.1 (A:8-106) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Matrin 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=3.3e-15  Score=119.59  Aligned_cols=74  Identities=12%  Similarity=0.215  Sum_probs=67.2

Q ss_pred             cCcEEEEeCCCCC-CCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH---hCCceeCCeeEEEeec
Q psy14559        165 IRRTLVAINIEES-VSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK---LNGTNLKGKTLQMFHS  240 (405)
Q Consensus       165 ~~rtvfV~NLp~~-~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~---lng~~l~g~~i~V~~a  240 (405)
                      ..++|||+|||.+ +|+++|.++|++||.|.++.+.    .++|||||+|.+.++|..|++   +++..++|++|+|.+|
T Consensus        17 ~~~~l~v~nLp~~~~te~~l~~~F~~fG~V~~v~~~----~~k~~afV~f~~~~~A~~Ai~~~~~~~~~~~gr~l~V~~s   92 (99)
T d1x4fa1          17 LGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILM----RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLS   92 (99)
T ss_dssp             CCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEE----TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEE
T ss_pred             CCCEEEEeCCcCCccCHHHHHhhhccccceeEEEEe----ecCCcEEEEecchHHHHHHHHHHhcCCceECCEEEEEEEc
Confidence            4789999999985 8999999999999999999985    347899999999999999985   7889999999999998


Q ss_pred             cC
Q psy14559        241 TQ  242 (405)
Q Consensus       241 ~~  242 (405)
                      +.
T Consensus        93 ~~   94 (99)
T d1x4fa1          93 EK   94 (99)
T ss_dssp             CS
T ss_pred             CC
Confidence            63

>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein UBP1
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.56  E-value=4.6e-15  Score=125.83  Aligned_cols=81  Identities=17%  Similarity=0.158  Sum_probs=65.6

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      +...++|||+|||+++|+++|+++|+.||+|.+|++..   +..+++++|||||+|.+.++|..|+..+|...+++..+.
T Consensus        39 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~---d~~t~~~rg~afV~f~~~~~A~~Ai~~lng~~~~gr~l~  115 (139)
T d1u6fa1          39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVC---DRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLK  115 (139)
T ss_dssp             TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEE---ETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhhcccccccccc---ccccccccceeeEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence            33457899999999999999999999999999999944   234688999999999999999999975555444444444


Q ss_pred             eecC
Q psy14559         88 TPYN   91 (405)
Q Consensus        88 v~~~   91 (405)
                      +.++
T Consensus       116 V~~a  119 (139)
T d1u6fa1         116 VALA  119 (139)
T ss_dssp             EEES
T ss_pred             EEEc
Confidence            4444

>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cold-inducible RNA-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=2.1e-15  Score=118.34  Aligned_cols=77  Identities=9%  Similarity=0.129  Sum_probs=63.5

Q ss_pred             CCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHh-ccCCccccceeEE
Q psy14559          9 VKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQH-LTNTVFIDRALVV   87 (405)
Q Consensus         9 ~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~-~~n~~~~~~~~~v   87 (405)
                      .+.++|||+|||+++|+++|+++|+.||+|.++.+...   ..++.++|||||+|.+.++|+.|+. +++..+.++.+.|
T Consensus         3 ~~~~kifV~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~---~~~~~~~g~afV~f~~~~~a~~Ai~~l~~~~~~g~~l~V   79 (90)
T d1x5sa1           3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKD---RETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRV   79 (90)
T ss_dssp             CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCC---SSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEE
T ss_pred             CCCCEEEEECCCCcCCHHHHHHhhhccccccceeeccc---cccccccceEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence            35678999999999999999999999999999988432   2467889999999999999999995 5555555555554


Q ss_pred             e
Q psy14559         88 T   88 (405)
Q Consensus        88 v   88 (405)
                      -
T Consensus        80 ~   80 (90)
T d1x5sa1          80 D   80 (90)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=3.3e-15  Score=115.44  Aligned_cols=76  Identities=11%  Similarity=0.211  Sum_probs=61.9

Q ss_pred             EEEcCCCCCCCHHHHHHHhccCCceEEE-EEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEeecCC
Q psy14559         14 VQVANIAPQATRDQMQTLFGYLGKVEDL-RLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTPYNS   92 (405)
Q Consensus        14 LfVgNLp~~vTeedLr~lFs~~G~I~~v-~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~~~~   92 (405)
                      |||+|||+++|+++|+++|++||.|.++ ++ +.  +..+++++|||||+|.+.++|+.|+..+++..+++..+.+.++.
T Consensus         1 lfV~nLp~~~te~~l~~~F~~~G~i~~~~~i-~~--~~~~g~~~g~afV~f~~~~~a~~Ai~~~~g~~~~gr~l~v~~a~   77 (83)
T d1x5ta1           1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKI-MR--DPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAF   77 (83)
T ss_dssp             EEEECCCTTCCHHHHHHHHHTTSCBSSCCEE-CC--CTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESC
T ss_pred             CEEcCCCCcCcHHHHHHHHHHhCceeeeEEE-Ee--eccccccCceEEEEECCHHHHHHHHHhCCCcEECCEEEEEEEec
Confidence            7999999999999999999999999775 55 43  33568899999999999999999997666555555555555543

>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Neural RNA-binding protein Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.54  E-value=3.7e-15  Score=112.68  Aligned_cols=72  Identities=18%  Similarity=0.232  Sum_probs=61.9

Q ss_pred             EEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559         13 VVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus        13 tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      .|||+|||+++|+++|+++|+.||.|.++.+..   +..++.+++||||+|.+.++|+.|+++++..+.++.+.|
T Consensus         1 rlfV~nLp~~~te~~l~~~F~~~G~i~~~~~~~---~~~~~~~~~~afV~F~~~~~a~~al~~~~~~l~gr~i~V   72 (75)
T d2msta_           1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMF---DKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVEC   72 (75)
T ss_dssp             CEEEECCCSSCCHHHHHHHHHTTSCCSEECCBC---CTTCTTSCCEEEEECSCHHHHHHHHHCSSCCBTTBCCEE
T ss_pred             CEEEeCCCCCCCHHHHHHHHHHhCCcceeeeee---eccccccCceeEEEECCHHHHHHHHhcCCCEECCeEEEE
Confidence            489999999999999999999999999998833   234678999999999999999999997766666666554

>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.54  E-value=2.1e-15  Score=122.74  Aligned_cols=75  Identities=15%  Similarity=0.200  Sum_probs=61.2

Q ss_pred             CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccC-Ccccccee
Q psy14559          7 APVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTN-TVFIDRAL   85 (405)
Q Consensus         7 ~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n-~~~~~~~~   85 (405)
                      +.+..++|||+|||+.+|+++|+++|+.||+|.+|.| +        .++|||||+|.+.++|..|++.+| ..+.++.+
T Consensus         6 ~~r~~~~l~V~nLp~~~t~~~L~~~F~~fG~I~~v~l-~--------~~kg~afV~f~~~~~A~~A~~~lng~~~~gr~l   76 (111)
T d1whxa_           6 SGRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLL-P--------EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPL   76 (111)
T ss_dssp             TSEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEC-C--------SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBC
T ss_pred             CCCCCCEEEEECCCCCCCHHHHHhhhhccCCccEEEe-e--------ccCceEEEEEcCHHHHHHHHHHHcCCccCCCeE
Confidence            3556789999999999999999999999999999988 2        347999999999999999997544 55555544


Q ss_pred             EEeecC
Q psy14559         86 VVTPYN   91 (405)
Q Consensus        86 ~vv~~~   91 (405)
                       .+.++
T Consensus        77 -~v~~a   81 (111)
T d1whxa_          77 -YLEWA   81 (111)
T ss_dssp             -EEEEE
T ss_pred             -EEEEC
Confidence             44443

>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Matrin 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.54  E-value=8.6e-15  Score=114.83  Aligned_cols=74  Identities=14%  Similarity=0.210  Sum_probs=66.7

Q ss_pred             cCcEEEEeCCCCC-CCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-h--CCceeCCeeEEEeec
Q psy14559        165 IRRTLVAINIEES-VSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-L--NGTNLKGKTLQMFHS  240 (405)
Q Consensus       165 ~~rtvfV~NLp~~-~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-l--ng~~l~g~~i~V~~a  240 (405)
                      ..++|||+|||.. +|++||.++|++||.|.++.+..    .+++|||+|.+.++|..|+. +  ++..+.|++|+|.+|
T Consensus         7 ~sr~v~v~nl~~~~~t~~eL~~lF~~fG~I~~i~i~~----~k~~afV~f~~~~~A~~A~~~l~~~~~~~~gr~l~V~~s   82 (89)
T d1x4da1           7 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILN----KINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLS   82 (89)
T ss_dssp             CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECS----SSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEE
T ss_pred             CCcEEEEECCCCCcCCHHHHHHHHHhhCCeEEEEeec----cceEEEEEEcchhhHHHHHHHHhhCCCccCCceEEEEEC
Confidence            3789999999996 78999999999999999999943    46799999999999999997 4  788999999999999


Q ss_pred             cC
Q psy14559        241 TQ  242 (405)
Q Consensus       241 ~~  242 (405)
                      +.
T Consensus        83 ~~   84 (89)
T d1x4da1          83 QK   84 (89)
T ss_dssp             CC
T ss_pred             CC
Confidence            74

>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.2e-14  Score=115.24  Aligned_cols=83  Identities=14%  Similarity=0.132  Sum_probs=65.8

Q ss_pred             cccCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccc
Q psy14559          4 DTVAPVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDR   83 (405)
Q Consensus         4 ~~~~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~   83 (405)
                      .+-+..+.++|||+|||+++|+++|+++|+.||.|..+.+ ..     ...+++||||+|.+.++|+.|++.+|...+++
T Consensus         7 ~~p~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~-~~-----~~~~~g~afV~f~~~e~a~~Ai~~l~g~~~~g   80 (95)
T d1x4aa1           7 RGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDL-KN-----RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDG   80 (95)
T ss_dssp             SCCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE-CC-----SSSSSCCEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred             CCCCCCCCCEEEEECCCCCCCHHHHHHHHhcCCceEEEEe-cc-----cccccceEEEEECCHHHHHHHHHHhCCCEECC
Confidence            3344567789999999999999999999999999999988 22     23468999999999999999997555544555


Q ss_pred             eeEEeecCC
Q psy14559         84 ALVVTPYNS   92 (405)
Q Consensus        84 ~~~vv~~~~   92 (405)
                      ..+.+.++.
T Consensus        81 ~~l~V~~a~   89 (95)
T d1x4aa1          81 YRLRVEFPR   89 (95)
T ss_dssp             EECEEECCC
T ss_pred             EEEEEEecc
Confidence            555555543

>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.54  E-value=1.1e-14  Score=112.60  Aligned_cols=76  Identities=13%  Similarity=0.254  Sum_probs=62.3

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhc-cCCccccceeE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHL-TNTVFIDRALV   86 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~-~n~~~~~~~~~   86 (405)
                      .++++||||+|||+++|+++|+++|+.||+|.+|++.+        ..+|||||+|.+.++|..|++. ++..+.++..+
T Consensus         5 ~pP~~tl~V~nLp~~~t~~~l~~~f~~~G~i~~v~~~~--------~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~i   76 (83)
T d2b0ga1           5 QPPNQILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVP--------NRHDIAFVEFTTELQSNAAKEALQGFKITPTHAM   76 (83)
T ss_dssp             CSCCSEEEEESCCTTCCHHHHHHHHTTSTTEEEEEECT--------TTCSCEEEEESSHHHHHHHHHHHTTCBSSTTCBC
T ss_pred             CCCCCEEEEECCCCCCCHHHHHhhhccCccEEEeeeec--------ccceeEEEecCCHHHHHHHHHHhCCcEeCCCcEE
Confidence            56789999999999999999999999999999999932        2378999999999999999975 45555554444


Q ss_pred             EeecC
Q psy14559         87 VTPYN   91 (405)
Q Consensus        87 vv~~~   91 (405)
                      .+.|+
T Consensus        77 ~v~~a   81 (83)
T d2b0ga1          77 KITFA   81 (83)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            55543

>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 28
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.53  E-value=1.2e-14  Score=115.39  Aligned_cols=82  Identities=9%  Similarity=0.159  Sum_probs=65.3

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccC------Cccc
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTN------TVFI   81 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n------~~~~   81 (405)
                      ..+.++|||+|||+++|+++|+++|+.||+|.++.+..   +..++.++|||||+|.+.++|..|++.+|      +..+
T Consensus         5 ~~~~~tlfV~nLp~~~te~~l~~~f~~~G~v~~~~~~~---~~~~~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~   81 (98)
T d1x4ha1           5 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVL---HPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKL   81 (98)
T ss_dssp             CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCB---CSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEES
T ss_pred             CCCCCEEEEcCCCCcCCHHHHHHHHhccccceeeeecc---ccccccccceEEEEEcCHHHHHHHHHHcccccccCCcEE
Confidence            44678999999999999999999999999999999833   23467789999999999999999987543      3444


Q ss_pred             cceeEEeecCC
Q psy14559         82 DRALVVTPYNS   92 (405)
Q Consensus        82 ~~~~~vv~~~~   92 (405)
                      ++..+.+.++.
T Consensus        82 ~gr~l~v~~a~   92 (98)
T d1x4ha1          82 DGRQLKVDLAV   92 (98)
T ss_dssp             SSCEEEEECCC
T ss_pred             CCEEEEEEECC
Confidence            44455555443

>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

Probab=99.53  E-value=1.4e-15  Score=119.96  Aligned_cols=83  Identities=12%  Similarity=0.096  Sum_probs=67.0

Q ss_pred             cccCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccc
Q psy14559          4 DTVAPVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDR   83 (405)
Q Consensus         4 ~~~~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~   83 (405)
                      .+..+...++|||+|||+++|+++|+++|+.||.|.+++++ .+   .+++++|||||+|.+.++|+.|+++++. .+++
T Consensus         6 e~~~~~~~~~ifV~nL~~~~te~~l~~~F~~~G~i~~~~v~-~~---~~g~~kg~afv~F~~~e~a~~Al~~~g~-~~~g   80 (91)
T d1fjeb1           6 EGSESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVV-DV---RTGTNRKFGYVDFESAEDLEKALELTGL-KVFG   80 (91)
T ss_dssp             SSSSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCC-EE---EEETTTTEEEEEESSHHHHHHHHHGGGE-EETT
T ss_pred             CCCCCCCCcEEEEeCccCcchHHHHHHHHhcCCcEEEeeee-ec---CCCCccEEeEEeeCCHHHHHHHHhcCCc-EECC
Confidence            34456677899999999999999999999999999999883 22   2588999999999999999999986544 4555


Q ss_pred             eeEEeecC
Q psy14559         84 ALVVTPYN   91 (405)
Q Consensus        84 ~~~vv~~~   91 (405)
                      ..+.+.++
T Consensus        81 ~~i~V~~a   88 (91)
T d1fjeb1          81 NEIKLEKP   88 (91)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEEec
Confidence            55555443

>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif, single-stranded-interacting protein 1, RBMS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 1, RBMS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=8.6e-15  Score=117.45  Aligned_cols=74  Identities=7%  Similarity=0.095  Sum_probs=61.7

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHh-ccCCcccccee
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQH-LTNTVFIDRAL   85 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~-~~n~~~~~~~~   85 (405)
                      ....++|||+|||+++|+++|+++|+.||+|.++++...    .++.++|||||+|.+.++|..|+. +++..+.++.+
T Consensus        15 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~~~~~----~~~~~~g~afV~f~~~~~A~~Ai~~lng~~i~gr~~   89 (101)
T d1x5oa1          15 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRD----SSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPG   89 (101)
T ss_dssp             CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEEC----SSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTT
T ss_pred             cCCCCEEEEeCCCCCCCHHHHHHHHhhcccccceeeecc----cccccccceeEEeCCHHHHHHHHHHhCCCEECCcCC
Confidence            455689999999999999999999999999999998443    247789999999999999999996 45555545443

>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=9.5e-15  Score=116.21  Aligned_cols=77  Identities=19%  Similarity=0.325  Sum_probs=63.3

Q ss_pred             CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeE
Q psy14559          7 APVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALV   86 (405)
Q Consensus         7 ~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~   86 (405)
                      +.+..++|||+|||+.+|+++|+++|++||+|.+|++.+         .+|||||+|.+.++|..|+..+|...+++..+
T Consensus        14 ~~~~~~~l~v~nL~~~~te~~L~~~F~~fG~i~~v~i~~---------~kg~afV~f~~~~~A~~Ai~~l~~~~i~g~~l   84 (96)
T d1x4ga1          14 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFP---------EKGYSFVRFSTHESAAHAIVSVNGTTIEGHVV   84 (96)
T ss_dssp             SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEET---------TTTEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred             CCCCCCEEEEcCCCCCCCHHHHHHHHHHhCCceEEEEEe---------cceEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence            345678999999999999999999999999999999932         38999999999999999996555554555555


Q ss_pred             EeecCC
Q psy14559         87 VTPYNS   92 (405)
Q Consensus        87 vv~~~~   92 (405)
                      .+.|+.
T Consensus        85 ~v~~ak   90 (96)
T d1x4ga1          85 KCYWGK   90 (96)
T ss_dssp             EEECCC
T ss_pred             EEEEcC
Confidence            556654

>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 4B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=2.1e-14  Score=115.58  Aligned_cols=77  Identities=14%  Similarity=0.160  Sum_probs=63.5

Q ss_pred             CCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEee
Q psy14559         10 KTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTP   89 (405)
Q Consensus        10 ~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~   89 (405)
                      +.++|||+|||+++|+++|+++|+.|| |.++++....  ..+++++|||||+|.+.++|++|+++++..+.++.+.+..
T Consensus        14 p~~~v~V~nLp~~~te~~l~~~f~~~g-~~~~~~~~~~--~~~g~~~g~afV~f~~~e~a~~~~~~~~~~~~gr~l~V~~   90 (104)
T d1wi8a_          14 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREP--SNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDV   90 (104)
T ss_dssp             SCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCS--SCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEE
T ss_pred             CCCEEEEeCCCCcCCHHHHHHHHHHhc-cccceeeeee--ccCCCcceeeeEEECCHHHHHHHHHcCCCEECCEEEEEEE
Confidence            468999999999999999999999999 7788774432  2457789999999999999998898877776666655543

>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=3.8e-14  Score=114.17  Aligned_cols=81  Identities=10%  Similarity=0.125  Sum_probs=67.6

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      .....+|||+|||+++|+++|+++|+.||.|..+.++..+   .+++++|||||+|.++++|++|+++++..+.++.+.|
T Consensus        12 ~~~~~~v~v~nLP~~~te~dI~~~F~~~g~v~~~v~~~~~---~~~~~kG~afV~F~~~e~a~~a~~~~~~~i~gR~i~V   88 (104)
T d1wg5a_          12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD---FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEI   88 (104)
T ss_dssp             CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC---SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEE
T ss_pred             CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEEeC---CCCCcceEEEEEeCCHHHHHHHHhhCCCEEcceEEEE
Confidence            4556789999999999999999999999999886664433   3578999999999999999999998777777777766


Q ss_pred             eecC
Q psy14559         88 TPYN   91 (405)
Q Consensus        88 v~~~   91 (405)
                      ....
T Consensus        89 ~~~~   92 (104)
T d1wg5a_          89 FKSS   92 (104)
T ss_dssp             EEEC
T ss_pred             EECC
Confidence            6543

>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.1e-14  Score=113.91  Aligned_cols=75  Identities=19%  Similarity=0.248  Sum_probs=61.5

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      ...+++|||+|||+++|+++|+++|++||+|.+|++ +       ..+++||||+|.+.++|+.|+.  +...+++..+.
T Consensus         2 s~~s~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~-~-------~~~~gfafV~f~~~~~a~~a~~--~~~~i~g~~l~   71 (88)
T d1wf0a_           2 SSGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFI-P-------KPFRAFAFVTFADDQIAQSLCG--EDLIIKGISVH   71 (88)
T ss_dssp             CSCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEEC-C-------SSCCSCCEEECSCHHHHHHTTT--CEEEETTEEEE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCceEEEE-e-------eccCceEEEEECCHHHHHHHHh--CCCEECCEEeE
Confidence            456899999999999999999999999999999987 2       3358999999999999999985  44445555555


Q ss_pred             eecCC
Q psy14559         88 TPYNS   92 (405)
Q Consensus        88 v~~~~   92 (405)
                      +.++.
T Consensus        72 v~~a~   76 (88)
T d1wf0a_          72 ISNAE   76 (88)
T ss_dssp             EECCC
T ss_pred             EEeCC
Confidence            55443

>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: APOBEC1 stimulating protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=2.3e-14  Score=111.40  Aligned_cols=75  Identities=12%  Similarity=0.141  Sum_probs=63.7

Q ss_pred             CCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEe
Q psy14559          9 VKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVT   88 (405)
Q Consensus         9 ~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv   88 (405)
                      ...++|||+|||+++|+++|+++|+.||.|..+.+         ++++|||||+|.+.++|..|+..+|+..+++..+.+
T Consensus         6 ~~~k~l~V~nLp~~~te~~l~~~F~~~g~i~~~~~---------~~~rg~afV~f~~~~~A~~Ai~~l~~~~i~g~~i~V   76 (86)
T d2cpda1           6 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV---------KKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV   76 (86)
T ss_dssp             SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEE---------EECSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEE
T ss_pred             cCCCEEEEcCCCCCCCHHHHHHhhcccceeeeEEE---------ccccEEEEEEeCCHHHHHHHHHHcCCCEECCEEEEE
Confidence            45689999999999999999999999999988877         235899999999999999999866666666666666


Q ss_pred             ecCC
Q psy14559         89 PYNS   92 (405)
Q Consensus        89 ~~~~   92 (405)
                      .++.
T Consensus        77 ~~ak   80 (86)
T d2cpda1          77 TLAK   80 (86)
T ss_dssp             ECCC
T ss_pred             Eecc
Confidence            6654

>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif, single-stranded-interacting protein 2, RBMS2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 2, RBMS2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=7.7e-15  Score=110.19  Aligned_cols=67  Identities=12%  Similarity=0.130  Sum_probs=57.4

Q ss_pred             EEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccc
Q psy14559         14 VQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDR   83 (405)
Q Consensus        14 LfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~   83 (405)
                      |||+|||+++|+++|+++|+.||.|.++++..   +..++.++|||||+|.+.++|+.|+..+|+..+++
T Consensus         1 lyV~nLp~~~te~~l~~~F~~~G~v~~~~~~~---~~~~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~G   67 (72)
T d1x4ea1           1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAIL---DKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQA   67 (72)
T ss_dssp             EEEESCCTTCCHHHHHTTSTTTSCEEEEEEEC---CSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCE
T ss_pred             CEEeCCCCcCCHHHHHHHHhhhcccccccccc---ccccccccceeEEEECCHHHHHHHHHHhCCCEECC
Confidence            79999999999999999999999999999843   33468899999999999999999997555444443

>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Negative elongation factor E, NELF-E
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.4e-14  Score=110.88  Aligned_cols=75  Identities=15%  Similarity=0.170  Sum_probs=61.1

Q ss_pred             CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeE
Q psy14559          7 APVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALV   86 (405)
Q Consensus         7 ~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~   86 (405)
                      +|...+||||+||+  +|+++|+++|++||+|.+|++ .        +.++||||+|.+.++|..|+..+|+..+++..+
T Consensus         1 ap~~~~ti~V~~~~--~te~~L~~~F~~~G~I~~v~~-~--------~~~~~afV~f~~~~~A~~Ai~~lng~~~~g~~l   69 (79)
T d2bz2a1           1 APRKGNTLYVYGED--MTPTLLRGAFSPFGNIIDLSM-D--------PPRNCAFVTYEKMESADQAVAELNGTQVESVQL   69 (79)
T ss_dssp             CCCCCCEEEEECSS--CCHHHHHHHHSTTCCCSCEEE-E--------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBC
T ss_pred             CCCCCCEEEEECCC--CCHHHHHHHHhccCccceeee-c--------cCCCEEEEEEcccHHHHHHHHHhCCCEECCEEE
Confidence            46788999999995  999999999999999999999 2        247899999999999999996655555555555


Q ss_pred             EeecCC
Q psy14559         87 VTPYNS   92 (405)
Q Consensus        87 vv~~~~   92 (405)
                      .+.++.
T Consensus        70 ~V~~a~   75 (79)
T d2bz2a1          70 KVNIAR   75 (79)
T ss_dssp             EEEECC
T ss_pred             EEEEec
Confidence            555543

>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein EWS
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2.9e-14  Score=113.91  Aligned_cols=87  Identities=11%  Similarity=0.033  Sum_probs=65.6

Q ss_pred             cCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEee-----ccCCCCCCccccEEEEEecchhhHHHHHhccCCcc
Q psy14559          6 VAPVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYP-----IARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVF   80 (405)
Q Consensus         6 ~~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~-----~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~   80 (405)
                      ......++|||+|||+++|+++|+++|+.||+|..+.+..     ...+..+++++|||||+|.+.++|..|+..+|+..
T Consensus         3 ~~~~~~~~i~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~d~~~~~~~g~afV~f~~~~~a~~Ai~~l~g~~   82 (101)
T d2cpea1           3 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD   82 (101)
T ss_dssp             CCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred             CCCCCCCEEEEECCCCcCCHHHHHHHHHHCceEEEeeecccceeEEeeccccccccceeeEEecCHHHHHHHHHHhCCCE
Confidence            4456788999999999999999999999999986432211     11233468889999999999999999997655555


Q ss_pred             ccceeEEeecCC
Q psy14559         81 IDRALVVTPYNS   92 (405)
Q Consensus        81 ~~~~~~vv~~~~   92 (405)
                      +++..+.+.++.
T Consensus        83 ~~gr~i~V~~a~   94 (101)
T d2cpea1          83 FQGSKLKVSLAR   94 (101)
T ss_dssp             ETTEECEEECSS
T ss_pred             ECCEEEEEEEcC
Confidence            555555555443

>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2.9e-14  Score=111.29  Aligned_cols=76  Identities=12%  Similarity=0.152  Sum_probs=61.2

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHh-ccCCccccceeE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQH-LTNTVFIDRALV   86 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~-~~n~~~~~~~~~   86 (405)
                      .++++||||+|||+++|+++|+++|+.||.|.++.+..       ++++|||||+|.+.++|..|+. +++..+.++..+
T Consensus         7 ~pPs~tL~V~NLp~~~te~~l~~~F~~~G~v~~~~~~~-------~~~~~~afV~f~~~~~A~~A~~~l~~~~i~~g~~l   79 (88)
T d2adca2           7 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFF-------QKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHL   79 (88)
T ss_dssp             CCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEEC-------SSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred             CCCCCEEEEECCCCCCCHHHHHHHhhccCCEEEEEEee-------ecccceeEEEECCHHHHHHHHHhccCCEecCCCEE
Confidence            35689999999999999999999999999999887732       3458899999999999999996 455555454444


Q ss_pred             Eeec
Q psy14559         87 VTPY   90 (405)
Q Consensus        87 vv~~   90 (405)
                      .+.+
T Consensus        80 ~v~~   83 (88)
T d2adca2          80 RVSF   83 (88)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            4444

>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing octamer-binding protein, NonO {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Non-POU domain-containing octamer-binding protein, NonO
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.49  E-value=2.1e-14  Score=111.78  Aligned_cols=74  Identities=14%  Similarity=0.264  Sum_probs=60.5

Q ss_pred             CCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEee
Q psy14559         10 KTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTP   89 (405)
Q Consensus        10 ~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~   89 (405)
                      ..++|||+|||+++|+++|+++|+.||+|.+|++.         ++++||||+|.+.++|+.|++.+|+..+++..+.+.
T Consensus         7 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~i~~~---------~~k~~afV~f~~~~~A~~A~~~l~g~~i~g~~l~V~   77 (86)
T d2cpja1           7 QRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIH---------KDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVR   77 (86)
T ss_dssp             CTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEE---------TTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEE
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHhCCceEeeee---------cccceEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence            45789999999999999999999999999999992         237899999999999999997655544445555555


Q ss_pred             cCC
Q psy14559         90 YNS   92 (405)
Q Consensus        90 ~~~   92 (405)
                      ++.
T Consensus        78 ~A~   80 (86)
T d2cpja1          78 FAC   80 (86)
T ss_dssp             ESS
T ss_pred             ECC
Confidence            443

>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

Probab=99.49  E-value=2.1e-14  Score=114.01  Aligned_cols=77  Identities=16%  Similarity=0.138  Sum_probs=64.6

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      ..+.++|||+|||+++|+++|+++|+.||.|..++.        ++++++||||+|.+.++|+.|+..+|+..+++..+.
T Consensus        13 ~~~~~~l~V~nL~~~~te~~l~~~F~~~g~v~~~~~--------~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~gr~i~   84 (96)
T d1fjca_          13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQ--------DGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVS   84 (96)
T ss_dssp             TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCEEE--------TTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcccceeeee--------cCccccEEEEEeCCHHHHHHHHHHcCCCEECCEEEE
Confidence            556799999999999999999999999999887755        366899999999999999999976666666666666


Q ss_pred             eecCC
Q psy14559         88 TPYNS   92 (405)
Q Consensus        88 v~~~~   92 (405)
                      +.+..
T Consensus        85 V~~a~   89 (96)
T d1fjca_          85 LYYTG   89 (96)
T ss_dssp             EEECS
T ss_pred             EEEeC
Confidence            65554

>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hypothetical protein FLJ20273
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=3.2e-14  Score=112.94  Aligned_cols=80  Identities=9%  Similarity=0.156  Sum_probs=63.5

Q ss_pred             CcEEEEcCCCCCCCHHHHHHHhccCCc-eEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccC--CccccceeEE
Q psy14559         11 TKVVQVANIAPQATRDQMQTLFGYLGK-VEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTN--TVFIDRALVV   87 (405)
Q Consensus        11 ~~tLfVgNLp~~vTeedLr~lFs~~G~-I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n--~~~~~~~~~v   87 (405)
                      +|.|||+|||.++|+++|+++|+.||+ |.+++++...  ..+++++|||||+|.+.++|..|++.++  ...+++..+.
T Consensus         1 n~rLyV~nLp~~~te~~l~~~f~~~g~~i~~v~~~~~~--~~~~~~rg~aFV~F~~~~~A~~Ai~~l~~~~~~~~g~~i~   78 (96)
T d2disa1           1 NCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASA--ADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA   78 (96)
T ss_dssp             SEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSS--CTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred             CCEEEEcCCCCcCCHHHHHHHHHHhCCcceEEEEeeec--cccccCCCeEEEEEcCHHHHHHHHHHHcCCCeEECCEEEE
Confidence            479999999999999999999999996 9999984321  1357889999999999999999997542  3444455555


Q ss_pred             eecCC
Q psy14559         88 TPYNS   92 (405)
Q Consensus        88 v~~~~   92 (405)
                      +.|+.
T Consensus        79 V~~A~   83 (96)
T d2disa1          79 VDWAE   83 (96)
T ss_dssp             EEESC
T ss_pred             EEEcC
Confidence            66654

>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: E3 ubiquitin protein ligase CNOT4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.47  E-value=2.2e-14  Score=112.41  Aligned_cols=77  Identities=17%  Similarity=0.244  Sum_probs=59.6

Q ss_pred             CCcEEEEcCCCCCCCHHHH---HHHhccCCceEEEEEeeccCCC-CCCccccEEEEEecchhhHHHHHhccC-Cccccce
Q psy14559         10 KTKVVQVANIAPQATRDQM---QTLFGYLGKVEDLRLYPIARDV-SIPVQSRICYVKFFDEKCVGISQHLTN-TVFIDRA   84 (405)
Q Consensus        10 ~~~tLfVgNLp~~vTeedL---r~lFs~~G~I~~v~i~~~~~d~-~~~~~~g~aFV~F~~~e~A~~Al~~~n-~~~~~~~   84 (405)
                      ..++|||+|||+++|+++|   +++|++||+|.+|.+ +.++.. ..+..+|||||+|.+.++|..|++.+| ..+.++.
T Consensus         7 q~n~vyV~nLp~~~t~~~l~~~~e~F~~~G~I~~v~i-~~~~~~~~~~~~~g~aFV~f~~~~~A~~Ai~~lng~~~~gr~   85 (89)
T d2cpia1           7 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVI-NNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT   85 (89)
T ss_dssp             CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEE-ECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred             ecCEEEEECCCCccCHHHHHHHHHHhcccCCceEEEE-eeccCcCCCCCcceEEEEecccchhHHHHHHHhCCCEECCEE
Confidence            3568999999999999999   678999999999999 433321 223456899999999999999997554 5555555


Q ss_pred             eEE
Q psy14559         85 LVV   87 (405)
Q Consensus        85 ~~v   87 (405)
                      +.+
T Consensus        86 lkv   88 (89)
T d2cpia1          86 LKA   88 (89)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=3.1e-14  Score=115.31  Aligned_cols=73  Identities=18%  Similarity=0.281  Sum_probs=58.8

Q ss_pred             CcEEEEcCCCC-CCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEee
Q psy14559         11 TKVVQVANIAP-QATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTP   89 (405)
Q Consensus        11 ~~tLfVgNLp~-~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~   89 (405)
                      +++|||+|||+ .+|+++|+++|+.||+|.+|++.. +       .+|||||+|.+.++|..|++.+|+..+++..+.+.
T Consensus         2 ~~~l~V~nL~p~~~te~~L~~~F~~fG~I~~v~i~~-~-------~kg~afV~f~~~~~A~~ai~~lng~~l~g~~l~v~   73 (109)
T d2adca1           2 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILF-N-------KKENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT   73 (109)
T ss_dssp             CSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECC-T-------TSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred             CCEEEEeCCCcccCCHHHHHHHHhhccccceEEEEe-c-------ccceEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence            68999999966 599999999999999999999932 2       37899999999999999997655544444444554


Q ss_pred             cC
Q psy14559         90 YN   91 (405)
Q Consensus        90 ~~   91 (405)
                      +.
T Consensus        74 ~s   75 (109)
T d2adca1          74 LS   75 (109)
T ss_dssp             CC
T ss_pred             EC
Confidence            44

>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=5.9e-14  Score=112.65  Aligned_cols=77  Identities=10%  Similarity=0.050  Sum_probs=63.9

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      +...++|||+|||+++|+++|+++|+.||. .++.+.. +.   ++..+|||||+|.+.++|+.|+.+++..+.++.+.|
T Consensus        12 ~~~~~~v~v~nLp~~~te~dl~~~F~~~~~-~~v~~~~-~~---~g~~~G~afVeF~~~~~a~~Al~~~~~~i~gR~I~V   86 (102)
T d1weza_          12 STTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEI-GP---DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVEL   86 (102)
T ss_dssp             CSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEE-SS---SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEE
T ss_pred             CCCCCEEEEeCCCCcCCHHHHHHHHhccCc-ceeeeEE-ec---CCcceEEEEEEECCHHHHHHHHHcCCCEECCEEEEE
Confidence            556689999999999999999999999985 4676633 22   477899999999999999999998777777776666


Q ss_pred             ee
Q psy14559         88 TP   89 (405)
Q Consensus        88 v~   89 (405)
                      ..
T Consensus        87 ~~   88 (102)
T d1weza_          87 FL   88 (102)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 41, RBM41
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1e-14  Score=116.92  Aligned_cols=81  Identities=15%  Similarity=0.210  Sum_probs=67.0

Q ss_pred             CCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEe
Q psy14559          9 VKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVT   88 (405)
Q Consensus         9 ~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv   88 (405)
                      .++++|||+|||.++|+++|+++|+.||.|.++.+....   .+++++|||||+|.+.++|..|++.+|+..+++..+.+
T Consensus        16 ~ps~tl~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~---~~g~~~g~~fV~f~~~~~A~~Ai~~l~g~~~~g~~l~V   92 (102)
T d2cpxa1          16 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRM---MTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVI   92 (102)
T ss_dssp             SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEE---ECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHhhccceeeEEeeccc---ccccccccceEEeccHHHHHHHHHHhCCCEECCEEEEE
Confidence            457899999999999999999999999999998884322   35788999999999999999999766655555666666


Q ss_pred             ecCC
Q psy14559         89 PYNS   92 (405)
Q Consensus        89 ~~~~   92 (405)
                      .++.
T Consensus        93 ~~ak   96 (102)
T d2cpxa1          93 EFGK   96 (102)
T ss_dssp             EECC
T ss_pred             EeCC
Confidence            6554

>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.46  E-value=3.5e-14  Score=110.28  Aligned_cols=77  Identities=10%  Similarity=0.056  Sum_probs=61.8

Q ss_pred             CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEE-EEeeccCCCCCCccccEEEEEecchhhHHHHHhc-cCCccccce
Q psy14559          7 APVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDL-RLYPIARDVSIPVQSRICYVKFFDEKCVGISQHL-TNTVFIDRA   84 (405)
Q Consensus         7 ~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v-~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~-~n~~~~~~~   84 (405)
                      +.+...+|||+|||+++|+++|+++|+.||.|.+. .+ ..+   .+++++|+|||+|.+.++|+.|+.. ++..+.++.
T Consensus         5 g~p~~~~l~v~nLp~~~~~~di~~~F~~~~~~~~~~~~-~~~---~~g~~~G~afV~f~~~e~a~~Ai~~l~~~~l~gr~   80 (86)
T d2cqpa1           5 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCL-KYN---EKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRK   80 (86)
T ss_dssp             CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEE-EEC---SSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEE
T ss_pred             CCCCCCEEEEECCCCCCCHHHHHHHHhhcccceeEEEE-EeC---CCCCcceEEEEEEcCcHHHHHHHHHcCCCEECCEE
Confidence            35567789999999999999999999999999774 44 332   2578999999999999999999965 555555555


Q ss_pred             eEE
Q psy14559         85 LVV   87 (405)
Q Consensus        85 ~~v   87 (405)
                      +.+
T Consensus        81 i~v   83 (86)
T d2cqpa1          81 VKL   83 (86)
T ss_dssp             CEE
T ss_pred             EEE
Confidence            444

>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=3e-14  Score=114.50  Aligned_cols=77  Identities=14%  Similarity=0.065  Sum_probs=62.8

Q ss_pred             CCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEee
Q psy14559         10 KTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTP   89 (405)
Q Consensus        10 ~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~   89 (405)
                      ...+|||+|||+++|+++|+++|+.||.|..+.+++.+.   +++++|+|||+|.+.++|+.|+.+++..+.++.+.|.+
T Consensus         7 ~~~~v~v~nLp~~~t~~~l~~~F~~~g~i~~~~~~~~~~---~g~~~G~afV~F~s~~~a~~Al~~n~~~i~gr~i~V~~   83 (103)
T d2cpya1           7 AKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN---NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHV   83 (103)
T ss_dssp             CCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT---TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEE
T ss_pred             CceEEEEeCCCCCCCHHHHhhhhcccceEEEEEEEEeCC---CCCcCccEEEEECCHHHHHHHHhcCCCeECCcEEEEEE
Confidence            446799999999999999999999999998754434432   68899999999999999999998766656666555544

>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein KIAA1579
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=4.5e-14  Score=110.37  Aligned_cols=74  Identities=7%  Similarity=0.116  Sum_probs=58.5

Q ss_pred             CCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEe
Q psy14559          9 VKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVT   88 (405)
Q Consensus         9 ~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv   88 (405)
                      ..+++|||+|||+++|+++|+++|++|| +..+.+         +..++||||+|.+.++|+.|++.+|...+++..+.+
T Consensus         3 s~s~~i~V~nLp~~~t~~~l~~lF~~~G-~~~~~~---------~~~kg~afV~f~~~~~A~~Ai~~ln~~~~~G~~l~V   72 (88)
T d1wg1a_           3 SGSSGILVKNLPQDSNCQEVHDLLKDYD-LKYCYV---------DRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIV   72 (88)
T ss_dssp             CCCCCEEEESCCSSCCHHHHHHHTCSSC-CCCEEE---------EGGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEE
T ss_pred             CCCCEEEEeCCCCccChHHHHHHHHhcC-ceeeee---------eccCCceEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence            4568999999999999999999999999 334444         346899999999999999999765555555555555


Q ss_pred             ecCC
Q psy14559         89 PYNS   92 (405)
Q Consensus        89 ~~~~   92 (405)
                      .+..
T Consensus        73 ~~a~   76 (88)
T d1wg1a_          73 QLQP   76 (88)
T ss_dssp             EECC
T ss_pred             EEcC
Confidence            5543

>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=3.4e-14  Score=111.65  Aligned_cols=77  Identities=10%  Similarity=0.178  Sum_probs=62.5

Q ss_pred             CCcEEEEcCCCCCCCHHHHHH----HhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCcccccee
Q psy14559         10 KTKVVQVANIAPQATRDQMQT----LFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRAL   85 (405)
Q Consensus        10 ~~~tLfVgNLp~~vTeedLr~----lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~   85 (405)
                      +++||||+|||+.+|+++|++    +|++||+|.+|++..      +++++|||||+|.+.++|..|++.+++..+++..
T Consensus         2 P~~tl~V~nLp~~~t~~dl~~~l~~~f~~~G~i~~i~~~~------~~~~~g~afV~F~~~~~A~~A~~~~~~~~~~g~~   75 (91)
T d1nu4a_           2 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR------SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP   75 (91)
T ss_dssp             CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH------HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhcccccccceEEee------eccCCCceEEEECCHHHHHHHHHHhCCCEECCEE
Confidence            579999999999999999864    689999999998822      3567999999999999999999765555555555


Q ss_pred             EEeecCC
Q psy14559         86 VVTPYNS   92 (405)
Q Consensus        86 ~vv~~~~   92 (405)
                      +.+.++.
T Consensus        76 l~v~~ak   82 (91)
T d1nu4a_          76 MRIQYAK   82 (91)
T ss_dssp             CEEEECS
T ss_pred             EEEEEeC
Confidence            5555554

>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Calcipressin-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.45  E-value=5e-14  Score=113.67  Aligned_cols=74  Identities=18%  Similarity=0.290  Sum_probs=66.4

Q ss_pred             CcEEEEeCCCCCC-CH----HHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEee
Q psy14559        166 RRTLVAINIEESV-SP----QELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFH  239 (405)
Q Consensus       166 ~rtvfV~NLp~~~-te----e~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~  239 (405)
                      .++|||+||+.++ ++    ++|+++|++||.|.++++.    ++++||||+|.+.++|.+|+. |||..|.|++|+|.+
T Consensus         5 ~~~L~v~nl~~~v~~~d~~k~~l~~lF~~~G~i~~~~~~----k~~~~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~   80 (104)
T d1weya_           5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYF----KSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYF   80 (104)
T ss_dssp             CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEE----TTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEEC
T ss_pred             CceEEEEeCCchhcCcHHHHHHHHHHhcccccceEEEEe----cCCCEEEEEECCHHHHHHHHHHhcccccCCCEeEEee
Confidence            5789999999986 33    5799999999999999985    468899999999999999999 999999999999999


Q ss_pred             ccCC
Q psy14559        240 STQS  243 (405)
Q Consensus       240 a~~~  243 (405)
                      ++..
T Consensus        81 a~~~   84 (104)
T d1weya_          81 AQTL   84 (104)
T ss_dssp             CCCS
T ss_pred             cccC
Confidence            9644

>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein 2, PTBP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1e-13  Score=108.17  Aligned_cols=76  Identities=12%  Similarity=0.182  Sum_probs=61.1

Q ss_pred             CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhcc--CCccccce
Q psy14559          7 APVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLT--NTVFIDRA   84 (405)
Q Consensus         7 ~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~--n~~~~~~~   84 (405)
                      ...++++|||+|||+++|+++|+++|+.||.|.++++.         .++++|||+|.+.++|+.|++..  +...+++.
T Consensus         4 ~~~Ps~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~---------~~~~~afV~f~~~e~A~~a~~~~~~~~~~~~g~   74 (88)
T d2cq1a1           4 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILML---------KGKNQAFLELATEEAAITMVNYYSAVTPHLRNQ   74 (88)
T ss_dssp             CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEE---------TTTTEEEEEESSHHHHHHHHHHHHHSCCEETTE
T ss_pred             CCCCCCEEEEeCCCCCCCHHHHHHHHhccccccccccc---------ccceEEEEEeCCHHHHHHHHHHHccCCCccCCC
Confidence            35689999999999999999999999999999999982         23689999999999999998642  34444444


Q ss_pred             eEEeecC
Q psy14559         85 LVVTPYN   91 (405)
Q Consensus        85 ~~vv~~~   91 (405)
                      .+.+.+.
T Consensus        75 ~l~v~~s   81 (88)
T d2cq1a1          75 PIYIQYS   81 (88)
T ss_dssp             ECEEEEC
T ss_pred             EEEEEEC
Confidence            4444443

>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins C1/C2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins C1/C2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=6.6e-14  Score=111.66  Aligned_cols=73  Identities=11%  Similarity=0.231  Sum_probs=59.9

Q ss_pred             CCCcEEEEcCCC-CCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559          9 VKTKVVQVANIA-PQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus         9 ~~~~tLfVgNLp-~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      ...++|||+||| ..+++++|+++|++||+|.+|++           ++|||||+|.+.++|+.|++.+|...+++..+.
T Consensus        13 ~~~~~lfV~nL~~~~~~~~~L~~~F~~~G~i~~~~i-----------~rg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~   81 (98)
T d1wf2a_          13 SMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSV-----------HKGFAFVQYVNERNARAAVAGEDGRMIAGQVLD   81 (98)
T ss_dssp             SCCCCEEEEEECTTTCCHHHHHHSSTTSSCEEEEEE-----------ETEEEEEEESSHHHHHHHHHTTTTCEETTEECE
T ss_pred             CCCcEEEEeCCCcccCCHHHHHHHHhhcCCEEEEEE-----------eCCeEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence            345789999997 47889999999999999999998           378999999999999999986665555555555


Q ss_pred             eecCC
Q psy14559         88 TPYNS   92 (405)
Q Consensus        88 v~~~~   92 (405)
                      +.++.
T Consensus        82 V~~a~   86 (98)
T d1wf2a_          82 INLAA   86 (98)
T ss_dssp             EEETT
T ss_pred             EEECC
Confidence            55543

>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Putative RNA-binding protein 15B, Rbm15b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.43  E-value=1.8e-13  Score=108.80  Aligned_cols=76  Identities=8%  Similarity=0.145  Sum_probs=61.0

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccc--ee
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDR--AL   85 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~--~~   85 (405)
                      ..++++|||+|||+++|+++|+++|++||+|.++++.         +.++||||+|.+.++|+.|++.+|...+++  ..
T Consensus        14 ~~Ps~tl~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~---------~~~~~afV~f~~~~~A~~A~~~l~~~~i~g~~~~   84 (97)
T d1whya_          14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHV---------KGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRR   84 (97)
T ss_dssp             CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEEC---------SSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCB
T ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhhcccceEeee---------ccccEEEeccCCHHHHHHHHHHhCCCEeCCCceE
Confidence            4568999999999999999999999999999999992         237899999999999999996554444432  23


Q ss_pred             EEeecCC
Q psy14559         86 VVTPYNS   92 (405)
Q Consensus        86 ~vv~~~~   92 (405)
                      +.+.++.
T Consensus        85 l~v~~ak   91 (97)
T d1whya_          85 LRVDFAK   91 (97)
T ss_dssp             CEEEECC
T ss_pred             EEEEeCC
Confidence            4455443

>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: IGF-II mRNA-binding protein 2 isoform A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=2.6e-14  Score=109.72  Aligned_cols=72  Identities=17%  Similarity=0.261  Sum_probs=58.5

Q ss_pred             cEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccC-CccccceeEEeec
Q psy14559         12 KVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTN-TVFIDRALVVTPY   90 (405)
Q Consensus        12 ~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n-~~~~~~~~~vv~~   90 (405)
                      .+|||+|||+++|+++|+++|++||.|.++++.         .++|||||+|.+.++|+.|++.+| ...+++..+.+.+
T Consensus         2 n~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~---------~~rg~aFV~f~~~~~A~~Ai~~lng~~~~~G~~i~V~~   72 (80)
T d2cqha1           2 NKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL---------LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDY   72 (80)
T ss_dssp             CCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE---------EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHhCcEEEeEEe---------cccceEEEEECCHHHHHHHHHHhCCCeEECCEEEEEEE
Confidence            369999999999999999999999999887762         358999999999999999997555 4445555555555


Q ss_pred             CC
Q psy14559         91 NS   92 (405)
Q Consensus        91 ~~   92 (405)
                      +.
T Consensus        73 a~   74 (80)
T d2cqha1          73 SV   74 (80)
T ss_dssp             CC
T ss_pred             cC
Confidence            44

>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleoporin 35
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.43  E-value=1.9e-13  Score=105.15  Aligned_cols=71  Identities=10%  Similarity=0.127  Sum_probs=62.8

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCceeCCe-eEEEeecc
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALKLNGTNLKGK-TLQMFHST  241 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~-~i~V~~a~  241 (405)
                      .+.|+|+++|++++++.| .+|++||+|.++++    +.+++||||+|.+.++|++||++||..|+|+ .|.|.+..
T Consensus         4 ~~wV~V~G~p~~~~~~il-~~F~~~G~I~~~~~----~~~~~~~fV~f~~~~~A~~Al~~nG~~~~g~~~vgV~~~~   75 (81)
T d1wwha1           4 DTWVTVFGFPQASASYIL-LQFAQYGNILKHVM----SNTGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPCI   75 (81)
T ss_dssp             GGEEEEECCCGGGHHHHH-HHHHTTSCEEEEEE----CSSSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEECC
T ss_pred             ccEEEEECCChHHHHHHH-HHHHhhhhhheEEe----cCCCCEEEEEEcccHHHHHHHhcCCCeECCcEEEEEEeCC
Confidence            567999999999997655 57999999999988    4568999999999999999999999999998 46788765

>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=8.8e-14  Score=112.77  Aligned_cols=68  Identities=12%  Similarity=0.123  Sum_probs=58.0

Q ss_pred             CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhc-cCCccc
Q psy14559          7 APVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHL-TNTVFI   81 (405)
Q Consensus         7 ~~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~-~n~~~~   81 (405)
                      ++.+..+|||+|||+.+|+++|+++|++||.|.+|.+...       +++|+|||+|.+.++|+.|+.. ++..+.
T Consensus         3 ~~s~~~~v~V~NL~~~vte~~L~~~F~~~G~i~~~~i~~~-------~~~g~aFV~f~~~e~A~~Ai~~ln~~~l~   71 (108)
T d2adba1           3 GQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-------NNQFQALLQYADPVSAQHAKLSLDGQNIY   71 (108)
T ss_dssp             CCCCEEEEESCSCCSTTHHHHHHHHHTTTSCEEEEEEEEE-------TTEEEEEEEESCHHHHHHHHHHHHSCCSS
T ss_pred             CCCCeEEEEEeCcCCCCCHHHHHHHHccCCcEEEEEEEee-------CCCCeEEEEECCHHHHHHHHHHHCCCEec
Confidence            4567889999999999999999999999999999999432       2489999999999999999864 444443

>d1jmta_ d.58.7.3 (A:) U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Splicing factor U2AF subunits
domain: U2AF35 (35 KDa subunit)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.1e-14  Score=117.69  Aligned_cols=74  Identities=15%  Similarity=0.187  Sum_probs=69.0

Q ss_pred             cEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEecc-CCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q psy14559        167 RTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTR-ENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHS  240 (405)
Q Consensus       167 rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~-~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a  240 (405)
                      ..++|.+++.++++++|+++|++||+|.+|+|+++ +++++|||||+|.+.++|.+|+. |||+.+.||+|+|+++
T Consensus        28 ~~~~v~~~~~~~~ed~l~e~f~k~G~I~~v~I~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lng~~~~gr~i~v~~s  103 (104)
T d1jmta_          28 SDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELS  103 (104)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEEC
T ss_pred             chHHhhhhhhhhhHHHHHHHhccCCCEEEEEeecCCCCCEeeEEEEEEechhHHHHHHHHHCCCEECCEEEEEEEC
Confidence            35888999999999999999999999999999765 77899999999999999999998 9999999999999875

>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein L-like {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein L-like
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.42  E-value=1.7e-13  Score=110.30  Aligned_cols=76  Identities=13%  Similarity=0.169  Sum_probs=62.4

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhcc--CCcccccee
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLT--NTVFIDRAL   85 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~--n~~~~~~~~   85 (405)
                      ..++++|||+|||+.+||++|+++|+.||.|.++++.         +.+++|||+|.+.++|+.|+...  +...+++..
T Consensus        12 ~~ps~~l~v~nlp~~~te~~l~~~F~~fG~I~~~~~~---------~~k~~AfV~f~~~e~A~~ai~~~~~~~~~~~g~~   82 (104)
T d1wexa_          12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMM---------PFKRQALVEFENIDSAKECVTFAADVPVYIAGQQ   82 (104)
T ss_dssp             CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEE---------TTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSB
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHhhhhcccceEEEEE---------ecceeEEEEeCCHHHHHHHHHHHcCCCcEEeeEE
Confidence            5578999999999999999999999999999999993         24789999999999999999643  455555555


Q ss_pred             EEeecCC
Q psy14559         86 VVTPYNS   92 (405)
Q Consensus        86 ~vv~~~~   92 (405)
                      +.+.+..
T Consensus        83 l~v~~s~   89 (104)
T d1wexa_          83 AFFNYST   89 (104)
T ss_dssp             CEEEECS
T ss_pred             EEEEEcC
Confidence            5555443

>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=8.3e-14  Score=113.72  Aligned_cols=80  Identities=16%  Similarity=0.111  Sum_probs=66.4

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEE
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVV   87 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~v   87 (405)
                      ....++|||+|||+++|+++|+++|+.||.+..+.+...+   .++.++|+|||+|.+.++|+.|+.+++..+.++.+.|
T Consensus        15 ~~~~~~i~v~nLp~~~t~~di~~~F~~~g~~~~~~~~~~~---~~g~~~G~afVeF~~~e~a~~al~~~~~~i~gR~i~V   91 (112)
T d1wela1          15 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYG---PNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQV   91 (112)
T ss_dssp             CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEEC---TTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEE
T ss_pred             CCCCeEEEEecCCCcCcHHHHhhHHhhccccccceeeecC---cccceeeEEEEEECCHHHHHHHHHcCCCcCCCEEEEE
Confidence            4456799999999999999999999999999775443332   2588999999999999999999998777777777777


Q ss_pred             eec
Q psy14559         88 TPY   90 (405)
Q Consensus        88 v~~   90 (405)
                      .+.
T Consensus        92 ~~~   94 (112)
T d1wela1          92 HPI   94 (112)
T ss_dssp             EEE
T ss_pred             EEc
Confidence            654

>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Ribonucleoprotein PTB-binding 1, Raver-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.41  E-value=2.3e-13  Score=103.04  Aligned_cols=68  Identities=4%  Similarity=0.081  Sum_probs=54.5

Q ss_pred             EEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEeecC
Q psy14559         14 VQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTPYN   91 (405)
Q Consensus        14 LfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~~~   91 (405)
                      |||+|||+++|+++|+++|++|| +..+++         ++++|||||+|.+.++|+.|+..+|+..+++..+.+.+.
T Consensus         1 i~V~nLp~~~t~~~l~~~F~~~g-~~~~~~---------~~~~g~afv~f~~~~~A~~Ai~~ln~~~~~g~~l~V~~a   68 (75)
T d1wi6a1           1 ILIRGLPGDVTNQEVHDLLSDYE-LKYCFV---------DKYKGTAFVTLLNGEQAEAAINTFHQSRLRERELSVQLQ   68 (75)
T ss_dssp             EEEECCCTTCCHHHHHHHTTTSC-EEEEEE---------ETTTTEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred             CEEeCCCCcCCHHHHHHHHhccc-ccceee---------cccceeEEEEECCHHHHHHHHHHhCCccCCCCEEEEEEe
Confidence            79999999999999999999999 566555         346899999999999999999655555444445555543

>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=6.7e-15  Score=115.46  Aligned_cols=78  Identities=17%  Similarity=0.228  Sum_probs=63.6

Q ss_pred             CcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeecc--CCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEe
Q psy14559         11 TKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIA--RDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVT   88 (405)
Q Consensus        11 ~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~--~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv   88 (405)
                      .|+|||+|||+++|+++|+++|+.||.|.++.+....  .+..+++++|||||+|.+.++|+.|+.+++..+.++.+.|.
T Consensus         1 aRrlyVgNLp~~~te~~l~~~F~~~g~~~~~~~~~~~~~~~~~~~~~kg~afV~f~~~e~a~~a~~l~g~~~~Gr~l~V~   80 (90)
T d1u2fa_           1 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIR   80 (90)
T ss_dssp             CCEEEECSCCTTCCTTHHHHHHHHHHTTTTSCCSSSCSEEECCEETTTTEEEEEESSCTTTTTGGGGSSCCSSSSCCCCB
T ss_pred             CCEEEEcCCCCccchHHHHHHHHhhCcEEEEEEeccceeeecccCCCceEEEEEeCCHHHHHHHHhhCCcEECCEEEEEC
Confidence            4789999999999999999999999998887663211  11235678999999999999999999877777777776653

>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=8.2e-14  Score=108.54  Aligned_cols=65  Identities=17%  Similarity=0.180  Sum_probs=55.2

Q ss_pred             EEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHh-ccCCccccceeEE
Q psy14559         13 VVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQH-LTNTVFIDRALVV   87 (405)
Q Consensus        13 tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~-~~n~~~~~~~~~v   87 (405)
                      +|||+|||+++|+++|+++|+.||+|.++++ .         ..|||||+|.+.++|+.|+. +++..+.++.+.+
T Consensus         2 rvfV~nlp~~~~~~~l~~~F~~~G~v~~~~i-~---------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~i~v   67 (87)
T d3begb1           2 RVVVSGLPPSGSWQDLKDHMREAGDVCYADV-Y---------RDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGET   67 (87)
T ss_dssp             CEEEEECCSSCCTTHHHHHHGGGSCEEEEEE-C---------TTSEEEEEESSHHHHHHHHHHHTTCBCCCTTSCC
T ss_pred             eEEEECCCCcCCHHHHHHHHhhhcccccccc-c---------ccceeeEEeCCHHHHHHHHHHhCCCEECCcEeEE
Confidence            6999999999999999999999999999998 2         14899999999999999995 5555555555443

>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9 (SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 9 (SFRS9)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.37  E-value=3.3e-13  Score=107.49  Aligned_cols=69  Identities=13%  Similarity=0.181  Sum_probs=58.7

Q ss_pred             CCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHh-ccCCccccceeEEe
Q psy14559         10 KTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQH-LTNTVFIDRALVVT   88 (405)
Q Consensus        10 ~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~-~~n~~~~~~~~~vv   88 (405)
                      ..++|||+|||+++|+++|+++|+.||+|+++++.          .+|||||+|.+.++|+.|++ +++..+.++.+.+.
T Consensus        14 ~~~~i~V~Nlp~~~~~~~L~~~F~~~G~v~~~~i~----------~~g~afV~f~~~~~a~~Ai~~lng~~~~g~~i~v~   83 (98)
T d1wg4a_          14 SDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQ----------KDGMGMVEYLRKEDMEYALRKLDDTKFRSHEGETS   83 (98)
T ss_dssp             CSCEEEEECCCSSCCHHHHHHHHTTSSCEEEEEEE----------TTTEEEEEESSHHHHHHHHHHHSSEEEECTTSCEE
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHhhccccccccc----------ccceEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence            45689999999999999999999999999999982          26899999999999999996 55566666665553

>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Lupus LA protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.2e-12  Score=106.82  Aligned_cols=72  Identities=15%  Similarity=0.261  Sum_probs=62.7

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCH-HHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQ-ACVIPALK-LNGTNLKGKTLQMFHST  241 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~-e~A~~Al~-lng~~l~g~~i~V~~a~  241 (405)
                      ...+||||||+++|+++|+++|++||+|.+|.++    ..+|||||.|.+. ++|..|+. +||..+.++.+.|....
T Consensus        11 ~~~~fvgnL~~~~tee~Lk~~F~~fG~V~~v~i~----~~kg~gfV~F~~~~~~A~~a~~~~~~~~l~~~~~~v~~~~   84 (113)
T d1owxa_          11 CLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFV----RGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEV   84 (113)
T ss_dssp             CEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECC----TTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEE
T ss_pred             CeEEEECCCCCCCCHHHHHHHHHhcCChheEEEe----cCCceEEEEecCcHHHHHHHHHHhcCCceecCceEEEEee
Confidence            3467999999999999999999999999999995    3489999999985 67888887 99999988877777654

>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8, ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Alkylation repair AlkB homolog 8, ALKBH8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=7.7e-13  Score=105.95  Aligned_cols=62  Identities=23%  Similarity=0.377  Sum_probs=56.1

Q ss_pred             CcEEEEeC--CCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeC
Q psy14559        166 RRTLVAIN--IEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLK  231 (405)
Q Consensus       166 ~rtvfV~N--Lp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~  231 (405)
                      .+++||+|  ||+++|+++|+++|++||.|..|++..    .++||||+|.+.++|..|+. |||..+.
T Consensus        18 t~~l~V~ng~L~~~vte~~L~~~F~~~G~i~~i~~~~----~k~~aFV~f~~~e~A~~A~~~lng~~i~   82 (101)
T d2cq2a1          18 TQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP----NKPYSFARYRTTEESKRAYVTLNGKEVV   82 (101)
T ss_dssp             CSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT----TCSCEEEEESSHHHHHHHHHHTTTCEEE
T ss_pred             CceEEEECCCCCCCCCHHHHHHHHHhhCcccEEeecc----CccEEEEEECCHHHHHHHHHHhCCCCCC
Confidence            67899955  999999999999999999999998843    47899999999999999998 9998773

>d1x4fa1 d.58.7.1 (A:8-106) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Matrin 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.32  E-value=8.7e-13  Score=105.19  Aligned_cols=72  Identities=13%  Similarity=0.145  Sum_probs=58.2

Q ss_pred             CCCCcEEEEcCCCCC-CCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHh---ccCCccccc
Q psy14559          8 PVKTKVVQVANIAPQ-ATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQH---LTNTVFIDR   83 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~-vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~---~~n~~~~~~   83 (405)
                      ....++|||+|||.. +|+++|+++|+.||+|.++++.         .++|+|||+|.+.++|..|++   +++..+.++
T Consensus        15 ~~~~~~l~v~nLp~~~~te~~l~~~F~~fG~V~~v~~~---------~~k~~afV~f~~~~~A~~Ai~~~~~~~~~~~gr   85 (99)
T d1x4fa1          15 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILM---------RMKSQAFIEMETREDAMAMVDHCLKKALWFQGR   85 (99)
T ss_dssp             SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEE---------TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSS
T ss_pred             CCCCCEEEEeCCcCCccCHHHHHhhhccccceeEEEEe---------ecCCcEEEEecchHHHHHHHHHHhcCCceECCE
Confidence            446689999999974 8999999999999999999992         247899999999999999985   344445555


Q ss_pred             eeEEe
Q psy14559         84 ALVVT   88 (405)
Q Consensus        84 ~~~vv   88 (405)
                      .+.|.
T Consensus        86 ~l~V~   90 (99)
T d1x4fa1          86 CVKVD   90 (99)
T ss_dssp             CCEEE
T ss_pred             EEEEE
Confidence            55543

>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Matrin 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.32  E-value=1.1e-12  Score=102.65  Aligned_cols=75  Identities=9%  Similarity=0.111  Sum_probs=60.3

Q ss_pred             CCCCcEEEEcCCCCC-CCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhcc--CCccccce
Q psy14559          8 PVKTKVVQVANIAPQ-ATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLT--NTVFIDRA   84 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~-vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~--n~~~~~~~   84 (405)
                      ..++++|||+|||.. +|++||+++|+.||+|.+|.+.+         .+++|||+|.+.++|..|++..  +...+++.
T Consensus         5 ~~~sr~v~v~nl~~~~~t~~eL~~lF~~fG~I~~i~i~~---------~k~~afV~f~~~~~A~~A~~~l~~~~~~~~gr   75 (89)
T d1x4da1           5 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILN---------KINEAFIEMATTEDAQAAVDYYTTTPALVFGK   75 (89)
T ss_dssp             CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECS---------SSSCEEEEESSHHHHHHHHHHHHHSCCEETTE
T ss_pred             CCCCcEEEEECCCCCcCCHHHHHHHHHhhCCeEEEEeec---------cceEEEEEEcchhhHHHHHHHHhhCCCccCCc
Confidence            567899999999986 89999999999999999999922         3678999999999999998632  45555555


Q ss_pred             eEEeecC
Q psy14559         85 LVVTPYN   91 (405)
Q Consensus        85 ~~vv~~~   91 (405)
                      .+.+.++
T Consensus        76 ~l~V~~s   82 (89)
T d1x4da1          76 PVRVHLS   82 (89)
T ss_dssp             ECEEEEE
T ss_pred             eEEEEEC
Confidence            5555543

>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Calcipressin-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.27  E-value=2e-12  Score=103.99  Aligned_cols=76  Identities=5%  Similarity=0.027  Sum_probs=62.9

Q ss_pred             CCCCcEEEEcCCCCCC-CH----HHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCcccc
Q psy14559          8 PVKTKVVQVANIAPQA-TR----DQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFID   82 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~v-Te----edLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~   82 (405)
                      ...+.+|||+||++.+ ++    ++|+++|+.||+|.+++++         +++++|||+|.+.++|..|+..+|+..++
T Consensus         2 ~~~~~~L~v~nl~~~v~~~d~~k~~l~~lF~~~G~i~~~~~~---------k~~~~afV~f~~~~~A~~Ai~~lng~~~~   72 (104)
T d1weya_           2 SSGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYF---------KSFKRVRINFSNPLSAADARLRLHKTEFL   72 (104)
T ss_dssp             CSCCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEE---------TTTTEEEEECSSTTHHHHHHHTSTTSEET
T ss_pred             CCCCceEEEEeCCchhcCcHHHHHHHHHHhcccccceEEEEe---------cCCCEEEEEECCHHHHHHHHHHhcccccC
Confidence            4567899999999986 33    5699999999999999993         24789999999999999999877777776


Q ss_pred             ceeEEeecCC
Q psy14559         83 RALVVTPYNS   92 (405)
Q Consensus        83 ~~~~vv~~~~   92 (405)
                      +..+.+.++.
T Consensus        73 g~~l~v~~a~   82 (104)
T d1weya_          73 GKEMKLYFAQ   82 (104)
T ss_dssp             TEECEEECCC
T ss_pred             CCEeEEeecc
Confidence            6666666654

>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8, ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Alkylation repair AlkB homolog 8, ALKBH8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=2.5e-12  Score=102.87  Aligned_cols=67  Identities=16%  Similarity=0.212  Sum_probs=55.6

Q ss_pred             CCCCcEEEEcC--CCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccC-Cccccc
Q psy14559          8 PVKTKVVQVAN--IAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTN-TVFIDR   83 (405)
Q Consensus         8 ~~~~~tLfVgN--Lp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n-~~~~~~   83 (405)
                      ..++++|||+|  ||+++|+++|+++|++||.|.+|++.         ..++||||+|.+.++|..|++.+| ..+.++
T Consensus        15 ~~pt~~l~V~ng~L~~~vte~~L~~~F~~~G~i~~i~~~---------~~k~~aFV~f~~~e~A~~A~~~lng~~i~~~   84 (101)
T d2cq2a1          15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMP---------PNKPYSFARYRTTEESKRAYVTLNGKEVVDD   84 (101)
T ss_dssp             SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECC---------TTCSCEEEEESSHHHHHHHHHHTTTCEEECT
T ss_pred             CCCCceEEEECCCCCCCCCHHHHHHHHHhhCcccEEeec---------cCccEEEEEECCHHHHHHHHHHhCCCCCCCC
Confidence            45678888855  99999999999999999999999882         237899999999999999996555 444443

>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleoporin 35
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.25  E-value=6.6e-12  Score=96.31  Aligned_cols=73  Identities=10%  Similarity=0.134  Sum_probs=58.8

Q ss_pred             CCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeE-Ee
Q psy14559         10 KTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALV-VT   88 (405)
Q Consensus        10 ~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~-vv   88 (405)
                      +.+.|+|+|+|+++|++.| .+|++||+|.++++         +++++||||+|.+.++|+.|+++++..+.++.++ |.
T Consensus         3 ~~~wV~V~G~p~~~~~~il-~~F~~~G~I~~~~~---------~~~~~~~fV~f~~~~~A~~Al~~nG~~~~g~~~vgV~   72 (81)
T d1wwha1           3 DDTWVTVFGFPQASASYIL-LQFAQYGNILKHVM---------SNTGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVK   72 (81)
T ss_dssp             GGGEEEEECCCGGGHHHHH-HHHHTTSCEEEEEE---------CSSSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEE
T ss_pred             cccEEEEECCChHHHHHHH-HHHHhhhhhheEEe---------cCCCCEEEEEEcccHHHHHHHhcCCCeECCcEEEEEE
Confidence            3577999999999997655 57999999999988         2358999999999999999998766666666554 55


Q ss_pred             ecCC
Q psy14559         89 PYNS   92 (405)
Q Consensus        89 ~~~~   92 (405)
                      ++.+
T Consensus        73 ~~~~   76 (81)
T d1wwha1          73 PCID   76 (81)
T ss_dssp             ECCC
T ss_pred             eCCC
Confidence            5543

>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: HIV Tat-specific factor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=9.4e-12  Score=99.09  Aligned_cols=74  Identities=18%  Similarity=0.240  Sum_probs=64.8

Q ss_pred             CcEEEEeCC--CCCCC---------HHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCe
Q psy14559        166 RRTLVAINI--EESVS---------PQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK-LNGTNLKGK  233 (405)
Q Consensus       166 ~rtvfV~NL--p~~~t---------ee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~  233 (405)
                      .++|+|.|+  |.++.         +++|++.|++||.|..+.+..+  .++|||||+|.+.++|.+|+. |||..|.||
T Consensus         8 ~r~v~l~nmf~~~~~~~~~~~~~~i~edv~~~~~~~G~V~~v~~~~~--~~~G~~fV~f~~~e~A~~A~~~lng~~~~gr   85 (99)
T d2dita1           8 ERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDR--HPDGVASVSFRDPEEADYCIQTLDGRWFGGR   85 (99)
T ss_dssp             CCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETT--CTTCEEEEECSCHHHHHHHHHHSTTCEETTE
T ss_pred             ccEEEEccCCCHHHhhcchHHHHHHHHHHHHHhcCcccEEEEeccCC--CCccEEEEEECCHHHHHHHHHHhCCcEECCE
Confidence            689999999  55432         3689999999999999988653  567999999999999999998 999999999


Q ss_pred             eEEEeecc
Q psy14559        234 TLQMFHST  241 (405)
Q Consensus       234 ~i~V~~a~  241 (405)
                      +|+|+++.
T Consensus        86 ~i~v~~~~   93 (99)
T d2dita1          86 QITAQAWD   93 (99)
T ss_dssp             ECEEEECC
T ss_pred             EEEEEEeC
Confidence            99999875

>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Lupus LA protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=1.2e-11  Score=100.78  Aligned_cols=68  Identities=13%  Similarity=0.127  Sum_probs=54.3

Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecch-hhHHHHHhc-cCCccccce
Q psy14559          8 PVKTKVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDE-KCVGISQHL-TNTVFIDRA   84 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~-e~A~~Al~~-~n~~~~~~~   84 (405)
                      +....++||||||+.+|+++|+++|++||+|.+|.+ +        +.++||||.|.+. ++|..|+.. ++..+..+.
T Consensus         8 ~~g~~~~fvgnL~~~~tee~Lk~~F~~fG~V~~v~i-~--------~~kg~gfV~F~~~~~~A~~a~~~~~~~~l~~~~   77 (113)
T d1owxa_           8 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDF-V--------RGAKEGIILFKEKAKEALGKAKDANNGNLQLRN   77 (113)
T ss_dssp             CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEEC-C--------TTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTS
T ss_pred             CCCCeEEEECCCCCCCCHHHHHHHHHhcCChheEEE-e--------cCCceEEEEecCcHHHHHHHHHHhcCCceecCc
Confidence            445677899999999999999999999999999999 2        2489999999996 568777754 444444333

>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=4.2e-11  Score=96.01  Aligned_cols=76  Identities=18%  Similarity=0.188  Sum_probs=64.9

Q ss_pred             CcEEEEeCC--CCCCC--------HHHHHHHHhcCCCeeEEEEeccC----CCCCcEEEEEECCHHHHHHHHH-hCCcee
Q psy14559        166 RRTLVAINI--EESVS--------PQELVDFFQKVGTVNYIRFCTRE----NDTNKYALVEFSDQACVIPALK-LNGTNL  230 (405)
Q Consensus       166 ~rtvfV~NL--p~~~t--------ee~L~~~F~~~G~I~~i~i~~~~----~~~rg~afV~F~~~e~A~~Al~-lng~~l  230 (405)
                      .+.|.+.|+  |.++.        .++|++.|++||.|.+|.|+++.    ....|++||+|.+.++|.+|+. |||..+
T Consensus         4 s~vl~l~N~~~~~~l~~~~~~~~i~edi~~e~~k~G~v~~v~I~~~~~~~~~~~~g~vfV~f~~~e~A~~A~~~l~Gr~f   83 (104)
T d1o0pa_           4 TEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKF   83 (104)
T ss_dssp             CSEEEEESSCCTTTTTSHHHHHHHHHHHHHHHTTTSCEEEEECCCCTTSSSCTTCCEEEEEESCHHHHHHHHHHHSSCCS
T ss_pred             CcEEEEeCCCCHHHcCCchhHHHHHHHHHHHhcccCceEEEEEeecCCCCccCCceEEEEEECCHHHHHHHHHHHCCCEE
Confidence            678999999  55443        35799999999999999997542    2356899999999999999998 999999


Q ss_pred             CCeeEEEeecc
Q psy14559        231 KGKTLQMFHST  241 (405)
Q Consensus       231 ~g~~i~V~~a~  241 (405)
                      +||+|.+.++.
T Consensus        84 ~gR~v~v~f~~   94 (104)
T d1o0pa_          84 ANRVVVTKYCD   94 (104)
T ss_dssp             SSSCCEEEEEC
T ss_pred             CCeEEEEEEcC
Confidence            99999999975

>d1jmta_ d.58.7.3 (A:) U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Splicing factor U2AF subunits
domain: U2AF35 (35 KDa subunit)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=6.6e-12  Score=100.92  Aligned_cols=73  Identities=14%  Similarity=0.054  Sum_probs=59.9

Q ss_pred             cEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEe
Q psy14559         12 KVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVT   88 (405)
Q Consensus        12 ~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv   88 (405)
                      ..++|+|++..++|++|+++|++||+|.+|+| +.+   .+++++|+|||+|.+.++|..|+..+|+..++++.+.+
T Consensus        28 ~~~~v~~~~~~~~ed~l~e~f~k~G~I~~v~I-~~~---~~~~~~G~~fV~f~~~~~A~~Ai~~lng~~~~gr~i~v  100 (104)
T d1jmta_          28 SDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNV-CDN---LGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHA  100 (104)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEE-CCS---SSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCE
T ss_pred             chHHhhhhhhhhhHHHHHHHhccCCCEEEEEe-ecC---CCCCEeeEEEEEEechhHHHHHHHHHCCCEECCEEEEE
Confidence            34788889999999999999999999999999 443   35889999999999999999999765555555544443

>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: HIV Tat-specific factor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=2.4e-10  Score=90.67  Aligned_cols=79  Identities=14%  Similarity=0.161  Sum_probs=65.1

Q ss_pred             CCCCcEEEEcCC--CCCC---------CHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhcc
Q psy14559          8 PVKTKVVQVANI--APQA---------TRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLT   76 (405)
Q Consensus         8 ~~~~~tLfVgNL--p~~v---------TeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~   76 (405)
                      ...+++|+|+||  |..+         .+++|++.|++||+|.+|++ +.      +..+|+|||+|.+.++|..|+..+
T Consensus         5 ~~~~r~v~l~nmf~~~~~~~~~~~~~~i~edv~~~~~~~G~V~~v~~-~~------~~~~G~~fV~f~~~e~A~~A~~~l   77 (99)
T d2dita1           5 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FD------RHPDGVASVSFRDPEEADYCIQTL   77 (99)
T ss_dssp             CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ET------TCTTCEEEEECSCHHHHHHHHHHS
T ss_pred             CCCccEEEEccCCCHHHhhcchHHHHHHHHHHHHHhcCcccEEEEec-cC------CCCccEEEEEECCHHHHHHHHHHh
Confidence            567899999999  5432         24789999999999999988 32      335899999999999999999888


Q ss_pred             CCccccceeEEeecCCC
Q psy14559         77 NTVFIDRALVVTPYNSG   93 (405)
Q Consensus        77 n~~~~~~~~~vv~~~~~   93 (405)
                      |+..++++.+.+.++.+
T Consensus        78 ng~~~~gr~i~v~~~~g   94 (99)
T d2dita1          78 DGRWFGGRQITAQAWDG   94 (99)
T ss_dssp             TTCEETTEECEEEECCS
T ss_pred             CCcEECCEEEEEEEeCC
Confidence            88888778777777665

>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=1.7e-10  Score=92.33  Aligned_cols=83  Identities=16%  Similarity=0.119  Sum_probs=63.7

Q ss_pred             CCCcEEEEcCC--CCCC--------CHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCC
Q psy14559          9 VKTKVVQVANI--APQA--------TRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNT   78 (405)
Q Consensus         9 ~~~~tLfVgNL--p~~v--------TeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~   78 (405)
                      .++++|.++||  +...        ..+||++.|++||.|++|+| +.+.+.......|++||+|.+.++|..|++.+++
T Consensus         2 ~Ps~vl~l~N~~~~~~l~~~~~~~~i~edi~~e~~k~G~v~~v~I-~~~~~~~~~~~~g~vfV~f~~~e~A~~A~~~l~G   80 (104)
T d1o0pa_           2 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEI-PRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG   80 (104)
T ss_dssp             CCCSEEEEESSCCTTTTTSHHHHHHHHHHHHHHHTTTSCEEEEEC-CCCTTSSSCTTCCEEEEEESCHHHHHHHHHHHSS
T ss_pred             CCCcEEEEeCCCCHHHcCCchhHHHHHHHHHHHhcccCceEEEEE-eecCCCCccCCceEEEEEECCHHHHHHHHHHHCC
Confidence            46899999999  3332        45679999999999999998 5544333455679999999999999999987777


Q ss_pred             ccccceeEEeecCC
Q psy14559         79 VFIDRALVVTPYNS   92 (405)
Q Consensus        79 ~~~~~~~~vv~~~~   92 (405)
                      ..++++.+.+.+++
T Consensus        81 r~f~gR~v~v~f~~   94 (104)
T d1o0pa_          81 RKFANRVVVTKYCD   94 (104)
T ss_dssp             CCSSSSCCEEEEEC
T ss_pred             CEECCeEEEEEEcC
Confidence            66666666555443

>d1ufwa_ d.58.7.1 (A:) Synaptojanin 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Synaptojanin 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=0.00031  Score=52.97  Aligned_cols=54  Identities=24%  Similarity=0.474  Sum_probs=48.6

Q ss_pred             HHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCceeCCeeEEEeec
Q psy14559        181 QELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALKLNGTNLKGKTLQMFHS  240 (405)
Q Consensus       181 e~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~lng~~l~g~~i~V~~a  240 (405)
                      .+|.+.|+.||+|.-+|++.+      -..|+|.+-.+|.+|+.++|.++.|+.|+|...
T Consensus        39 ~~Llq~l~~~GeViLvRFv~d------~mwVTF~dG~SAL~al~l~g~~v~G~~l~It~~   92 (95)
T d1ufwa_          39 TELMQTLGSYGTIVLVRINQG------QMLVTFADSHSALSVLDVDGMKVKGRAVKISGP   92 (95)
T ss_dssp             HHHHHHHHHHSCCSEEEEETT------EEEEECSCSHHHHHHHHGGGSEETTEEEEEECC
T ss_pred             HHHHHHHhhCCeEEEEEEeCC------eEEEEECCcHHHHHHhccCCeEEcceEEEEecC
Confidence            478899999999999999754      588999999999999999999999999999753

>d1uw4a_ d.58.7.4 (A:) RNA processing protein UPF3x, RRM domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Smg-4/UPF3
domain: RNA processing protein UPF3x, RRM domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.51  E-value=0.0043  Score=46.93  Aligned_cols=70  Identities=16%  Similarity=0.300  Sum_probs=52.7

Q ss_pred             cEEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCC-ccccEEEEEecchhhHHHHH-hccCCccccc
Q psy14559         12 KVVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIP-VQSRICYVKFFDEKCVGISQ-HLTNTVFIDR   83 (405)
Q Consensus        12 ~tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~-~~~g~aFV~F~~~e~A~~Al-~~~n~~~~~~   83 (405)
                      ..|.|++|||+.||+++.+.++..|++.-....+-+.  +.+ ..-.-|||.|.+.+++..-. ...+..|.|.
T Consensus         2 tKvVvRrLPP~Lte~~F~~~l~~~~~~d~~~f~~Gk~--s~~~~~~SRAYi~F~~~~~v~~F~~~f~g~~F~D~   73 (91)
T d1uw4a_           2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDT--SLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDN   73 (91)
T ss_dssp             CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCC--SSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECT
T ss_pred             ceEEEecCCCCCCHHHHHHHhCCcCceEEEEEeCCCc--CCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEcC
Confidence            3689999999999999999999999988877755432  222 22346999999999966544 4566667663

>d2dgxa1 d.58.7.1 (A:563-635) Limkain-b1, LKAP {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Limkain-b1, LKAP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.48  E-value=0.0068  Score=43.28  Aligned_cols=59  Identities=20%  Similarity=0.277  Sum_probs=49.7

Q ss_pred             HHHHHHHhcCCCeeEEEEec-cCCCCCcEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecc
Q psy14559        181 QELVDFFQKVGTVNYIRFCT-RENDTNKYALVEFSDQACVIPALK-LNGTNLKGKTLQMFHST  241 (405)
Q Consensus       181 e~L~~~F~~~G~I~~i~i~~-~~~~~rg~afV~F~~~e~A~~Al~-lng~~l~g~~i~V~~a~  241 (405)
                      +-|.+.|+++|+|.++.+.. .++.  -.|-|...+..+|..|+. |+...+++++|.|.++.
T Consensus        11 q~L~~~f~~h~~V~sv~l~~~~dg~--~~A~V~v~~~q~A~~~v~~LhR~KiG~KRI~Vs~~~   71 (73)
T d2dgxa1          11 QLLQEAFARHGKVKSVELSPHTDYQ--LKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLAT   71 (73)
T ss_dssp             HHHHHHHHHHSCEEEEEECSCCSTT--CCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred             HHHHHHHHhheeEEEEEEEeccCCc--EEEEEEcCCHHHHHHHHHHHHHHhcCCeEEEEEEec
Confidence            34667899999999999832 2333  369999999999999998 99999999999999875

>d1uw4a_ d.58.7.4 (A:) RNA processing protein UPF3x, RRM domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Smg-4/UPF3
domain: RNA processing protein UPF3x, RRM domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.19  E-value=0.011  Score=44.63  Aligned_cols=66  Identities=15%  Similarity=0.280  Sum_probs=53.8

Q ss_pred             cEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEec-c-C-C-CCCcEEEEEECCHHHHHHHHH-hCCceeCC
Q psy14559        167 RTLVAINIEESVSPQELVDFFQKVGTVNYIRFCT-R-E-N-DTNKYALVEFSDQACVIPALK-LNGTNLKG  232 (405)
Q Consensus       167 rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~-~-~-~-~~rg~afV~F~~~e~A~~Al~-lng~~l~g  232 (405)
                      .+|.|.+||+++|++++.+.++..|++....... + + + ..-.-|||.|.+.+++..-.+ .+|+.+-+
T Consensus         2 tKvVvRrLPP~Lte~~F~~~l~~~~~~d~~~f~~Gk~s~~~~~~SRAYi~F~~~~~v~~F~~~f~g~~F~D   72 (91)
T d1uw4a_           2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD   72 (91)
T ss_dssp             CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred             ceEEEecCCCCCCHHHHHHHhCCcCceEEEEEeCCCcCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEc
Confidence            3789999999999999999999999998877642 2 1 1 123569999999999988877 99988754

>d1ufwa_ d.58.7.1 (A:) Synaptojanin 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Synaptojanin 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.96  E-value=0.048  Score=40.69  Aligned_cols=71  Identities=15%  Similarity=0.156  Sum_probs=55.2

Q ss_pred             CCCCcEEEEcCCCCCCCH---------HHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCC
Q psy14559          8 PVKTKVVQVANIAPQATR---------DQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNT   78 (405)
Q Consensus         8 ~~~~~tLfVgNLp~~vTe---------edLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~   78 (405)
                      .++..||.|.=..++..+         .+|.+.|+.||+|.=+++.           .+-.+|.|.+-++|-+|++++..
T Consensus        12 GPpDgTIvV~i~~~s~e~~~~FDe~l~~~Llq~l~~~GeViLvRFv-----------~d~mwVTF~dG~SAL~al~l~g~   80 (95)
T d1ufwa_          12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRIN-----------QGQMLVTFADSHSALSVLDVDGM   80 (95)
T ss_dssp             CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEE-----------TTEEEEECSCSHHHHHHHHGGGS
T ss_pred             CCCCcEEEEEeccCCccccccCCHHHHHHHHHHHhhCCeEEEEEEe-----------CCeEEEEECCcHHHHHHhccCCe
Confidence            456778888655544433         3577889999999999992           33489999999999999999999


Q ss_pred             ccccceeEEee
Q psy14559         79 VFIDRALVVTP   89 (405)
Q Consensus        79 ~~~~~~~~vv~   89 (405)
                      ...++.+.+.-
T Consensus        81 ~v~G~~l~It~   91 (95)
T d1ufwa_          81 KVKGRAVKISG   91 (95)
T ss_dssp             EETTEEEEEEC
T ss_pred             EEcceEEEEec
Confidence            88888776643

>d2dgxa1 d.58.7.1 (A:563-635) Limkain-b1, LKAP {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Limkain-b1, LKAP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.45  E-value=0.31  Score=34.40  Aligned_cols=58  Identities=16%  Similarity=0.100  Sum_probs=41.9

Q ss_pred             HHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhccCCccccceeEEeec
Q psy14559         27 QMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHLTNTVFIDRALVVTPY   90 (405)
Q Consensus        27 dLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~~n~~~~~~~~~vv~~   90 (405)
                      -|.+.|+++|+|.++.+.|-.+      ..-.|-|...+.++|..|+.-....-++...+.+..
T Consensus        12 ~L~~~f~~h~~V~sv~l~~~~d------g~~~A~V~v~~~q~A~~~v~~LhR~KiG~KRI~Vs~   69 (73)
T d2dgxa1          12 LLQEAFARHGKVKSVELSPHTD------YQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSL   69 (73)
T ss_dssp             HHHHHHHHHSCEEEEEECSCCS------TTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred             HHHHHHHhheeEEEEEEEeccC------CcEEEEEEcCCHHHHHHHHHHHHHHhcCCeEEEEEE
Confidence            3456899999999999955432      345799999999999999865555555555444443

>d1whva_ d.58.7.1 (A:) Poly(A)-specific ribonuclease PARN {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-specific ribonuclease PARN
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.11  E-value=0.19  Score=37.88  Aligned_cols=52  Identities=15%  Similarity=0.222  Sum_probs=43.1

Q ss_pred             EEEEcCCCCCCCHHHHHHHhccCCceEEEEEeeccCCCCCCccccEEEEEecchhhHHHHHhc
Q psy14559         13 VVQVANIAPQATRDQMQTLFGYLGKVEDLRLYPIARDVSIPVQSRICYVKFFDEKCVGISQHL   75 (405)
Q Consensus        13 tLfVgNLp~~vTeedLr~lFs~~G~I~~v~i~~~~~d~~~~~~~g~aFV~F~~~e~A~~Al~~   75 (405)
                      -||.-..|...+..||.++|+.||.|.=-.|    .+.       -|||...+.++|+.+++.
T Consensus        17 HVf~~tFP~~Wk~~dI~~lFSpfG~V~VswI----ddT-------Sa~V~L~~~e~~~~v~~~   68 (100)
T d1whva_          17 HVLHVTFPKEWKTSDLYQLFSAFGNIQISWI----DDT-------SAFVSLSQPEQVQIAVNT   68 (100)
T ss_dssp             SEEEEECCTTCCHHHHHHHHTTTCSCCCEEE----ETT-------EEEEECSCHHHHHHHHHH
T ss_pred             eeEEEeCCcccchhHHHHHhcCCCceEEEEe----cCc-------eEEEEecCHHHHHHHHHH
Confidence            3888899999999999999999999765555    222       399999999999888753

>d1whva_ d.58.7.1 (A:) Poly(A)-specific ribonuclease PARN {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-specific ribonuclease PARN
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.28  E-value=0.54  Score=35.28  Aligned_cols=53  Identities=19%  Similarity=0.347  Sum_probs=44.6

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeccCCCCCcEEEEEECCHHHHHHHHH
Q psy14559        166 RRTLVAINIEESVSPQELVDFFQKVGTVNYIRFCTRENDTNKYALVEFSDQACVIPALK  224 (405)
Q Consensus       166 ~rtvfV~NLp~~~tee~L~~~F~~~G~I~~i~i~~~~~~~rg~afV~F~~~e~A~~Al~  224 (405)
                      +.-||.-.+|..-...||.++|+.||.|. |..+.++     .|||.-.+.+.|..++.
T Consensus        15 RdHVf~~tFP~~Wk~~dI~~lFSpfG~V~-VswIddT-----Sa~V~L~~~e~~~~v~~   67 (100)
T d1whva_          15 RDHVLHVTFPKEWKTSDLYQLFSAFGNIQ-ISWIDDT-----SAFVSLSQPEQVQIAVN   67 (100)
T ss_dssp             CCSEEEEECCTTCCHHHHHHHHTTTCSCC-CEEEETT-----EEEEECSCHHHHHHHHH
T ss_pred             cceeEEEeCCcccchhHHHHHhcCCCceE-EEEecCc-----eEEEEecCHHHHHHHHH
Confidence            44699999999999999999999999874 3344443     69999999999999987