Psyllid ID: psy14594

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-----
Protein Sequence
MVEWSLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQPLYFVAESFEDAKDKMMFGVRYNPYTQSVDVIDSKVQLSELVQNINGEMQILLTSLKKI
Secondary Structure (PSIPRED)
ccccEEEEEEEEEEEEEEEcccEEEEcccccccccHHHHHcccccccccccHHHHccccccccccccEEEEEccHHHHHHHHHHcccccccccEEEccccHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccEHHHHHccccccEEEEccEEEEccHHHHccHHHHHHHcccccEEEEccHHHHHcccccccccccEEEEEccHHHHHHHHEEEEEEccccEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MVEWSLCYWFTVEFGLCRQEGQLKAFGAGLlssfgelqyclsdkpqrkpfepsvtalqtypiteyqplyfvaesfedakdkmmfgvrynpytqsvdviDSKVQLSELVQNINGEMQILLTSLKKI
Flexible Loop (DISEMBL)
MVEWSLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQPLYFVAESFEDAKDKMMFGVRYNPYTQSVDVIDSKVQLSELVQNINGEMQILLTSLKKI
Low Complexity Region (SEG)
MVEWSLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQPLYFVAESFEDAKDKMMFGVRYNPYTQSVDVIDSKVQLSELVQNINGEMQILLTSLKKI
Disordered region (IsUnstruct)
**EWSLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSD*******EPSVTALQTYPITEYQPLYFVAESFEDAKDKMMFGVRYNPYTQSVDVIDSKVQLSELVQNINGEMQILL******
Disordered Region (DISOPRED)
*VEWSLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQPLYFVAESFEDAKDKMMFGVRYNPYTQSVDVIDSKVQLSELVQNINGEMQILLTSLKKI
Disordered Region (DISEMBL)
MVEWSLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQPLYFVAESFEDAKDKMMFGVRYNPYTQSVDVIDSKVQLSELVQNINGEMQILLTSLKKI
Disordered Region (DISPRO)
MVEWSLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQPLYFVAESFEDAKDKMMFGVRYNPYTQSVDVIDSKVQLSELVQNINGEMQILLTSLKKI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVEWSLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQPLYFVAESFEDAKDKMMFGVRYNPYTQSVDVIDSKVQLSELVQNINGEMQILLTSLKKI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	125	2.2.26 [Sep-21-2011]
P17276	452	Protein henna OS=Drosophi	yes	N/A	0.968	0.267	0.615	1e-42
P00439	452	Phenylalanine-4-hydroxyla	yes	N/A	0.944	0.261	0.574	2e-36
P04176	453	Phenylalanine-4-hydroxyla	yes	N/A	0.944	0.260	0.582	6e-36
P16331	453	Phenylalanine-4-hydroxyla	yes	N/A	0.944	0.260	0.582	8e-36
Q2KIH7	451	Phenylalanine-4-hydroxyla	yes	N/A	0.944	0.261	0.566	1e-35
P18459	579	Tyrosine 3-monooxygenase	no	N/A	0.968	0.208	0.523	4e-33
P90925	457	Probable phenylalanine-4-	yes	N/A	0.944	0.258	0.511	8e-33
P17289	491	Tyrosine 3-monooxygenase	no	N/A	0.968	0.246	0.476	2e-30
Q54XS1	441	Phenylalanine-4-hydroxyla	yes	N/A	0.968	0.274	0.453	3e-30
P04177	498	Tyrosine 3-monooxygenase	no	N/A	0.968	0.242	0.469	3e-30

>sp|P17276|PH4H_DROME Protein henna OS=Drosophila melanogaster GN=Hn PE=2 SV=3

 Score =  171 bits (433), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 80/130 (61%), Positives = 102/130 (78%), Gaps = 9/130 (6%)

Query: 5   SLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITE 64
           S  +WFTVE+G+CRQEG+LKA+GAGLLSS+GEL+YCL+DKPQ K FEP VT +  YPIT+
Sbjct: 321 STIFWFTVEYGVCRQEGELKAYGAGLLSSYGELEYCLTDKPQLKDFEPEVTGVTKYPITQ 380

Query: 65  YQPLYFVAESFEDAKDKMM---------FGVRYNPYTQSVDVIDSKVQLSELVQNINGEM 115
           +QPLY+VA+SFE AK+K +         FGVRYN YTQSV+V+DSK Q+S L+ NIN E 
Sbjct: 381 FQPLYYVADSFETAKEKTIKFANSIPRPFGVRYNAYTQSVEVLDSKPQISNLMDNINSEF 440

Query: 116 QILLTSLKKI 125
           QIL  ++ K+
Sbjct: 441 QILQNAVAKL 450

Drosophila melanogaster (taxid: 7227)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 6EC: .EC: 4

>sp|P00439|PH4H_HUMAN Phenylalanine-4-hydroxylase OS=Homo sapiens GN=PAH PE=1 SV=1

 Score =  150 bits (379), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 73/127 (57%), Positives = 94/127 (74%), Gaps = 9/127 (7%)

Query: 8   YWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQP 67
           YWFTVEFGLC+Q   +KA+GAGLLSSFGELQYCLS+KP+  P E   TA+Q Y +TE+QP
Sbjct: 325 YWFTVEFGLCKQGDSIKAYGAGLLSSFGELQYCLSEKPKLLPLELEKTAIQNYTVTEFQP 384

Query: 68  LYFVAESFEDAKDKMM---------FGVRYNPYTQSVDVIDSKVQLSELVQNINGEMQIL 118
           LY+VAESF DAK+K+          F VRY+PYTQ ++V+D+  QL  L  +IN E+ IL
Sbjct: 385 LYYVAESFNDAKEKVRNFAATIPRPFSVRYDPYTQRIEVLDNTQQLKILADSINSEIGIL 444

Query: 119 LTSLKKI 125
            ++L+KI
Sbjct: 445 CSALQKI 451

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 6

EC: .

EC: 1

>sp|P04176|PH4H_RAT Phenylalanine-4-hydroxylase OS=Rattus norvegicus GN=Pah PE=1 SV=3

 Score =  149 bits (375), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 74/127 (58%), Positives = 92/127 (72%), Gaps = 9/127 (7%)

Query: 8   YWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQP 67
           YWFTVEFGLC++   +KA+GAGLLSSFGELQYCLSDKP+  P E   TA Q Y +TE+QP
Sbjct: 325 YWFTVEFGLCKEGDSIKAYGAGLLSSFGELQYCLSDKPKLLPLELEKTACQEYSVTEFQP 384

Query: 68  LYFVAESFEDAKDKMM---------FGVRYNPYTQSVDVIDSKVQLSELVQNINGEMQIL 118
           LY+VAESF DAK+K+          F VRY+PYTQ V+V+D+  QL  L  +IN E+ IL
Sbjct: 385 LYYVAESFSDAKEKVRTFAATIPRPFSVRYDPYTQRVEVLDNTQQLKILADSINSEVGIL 444

Query: 119 LTSLKKI 125
             +L+KI
Sbjct: 445 CNALQKI 451

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 6

EC: .

EC: 1

>sp|P16331|PH4H_MOUSE Phenylalanine-4-hydroxylase OS=Mus musculus GN=Pah PE=1 SV=4

 Score =  148 bits (374), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 74/127 (58%), Positives = 92/127 (72%), Gaps = 9/127 (7%)

Query: 8   YWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQP 67
           YWFTVEFGLC++   +KA+GAGLLSSFGELQYCLSDKP+  P E   TA Q Y +TE+QP
Sbjct: 325 YWFTVEFGLCKEGDSIKAYGAGLLSSFGELQYCLSDKPKLLPLELEKTACQEYTVTEFQP 384

Query: 68  LYFVAESFEDAKDKMM---------FGVRYNPYTQSVDVIDSKVQLSELVQNINGEMQIL 118
           LY+VAESF DAK+K+          F VRY+PYTQ V+V+D+  QL  L  +IN E+ IL
Sbjct: 385 LYYVAESFNDAKEKVRTFAATIPRPFSVRYDPYTQRVEVLDNTQQLKILADSINSEVGIL 444

Query: 119 LTSLKKI 125
             +L+KI
Sbjct: 445 CHALQKI 451

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 6

EC: .

EC: 1

>sp|Q2KIH7|PH4H_BOVIN Phenylalanine-4-hydroxylase OS=Bos taurus GN=PAH PE=2 SV=1

 Score =  147 bits (372), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 72/127 (56%), Positives = 94/127 (74%), Gaps = 9/127 (7%)

Query: 8   YWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQP 67
           YWFTVEFGLC+Q   +KA+GAGLLSSFGELQYCLSDKP+  P E   TA+Q Y ITE+QP
Sbjct: 324 YWFTVEFGLCKQGDSIKAYGAGLLSSFGELQYCLSDKPKLLPLELEKTAVQEYTITEFQP 383

Query: 68  LYFVAESFEDAKDKMM---------FGVRYNPYTQSVDVIDSKVQLSELVQNINGEMQIL 118
           LY+VAESF DAK+K+          F V Y+PYTQ ++V+D+  QL  L  +I+ E++IL
Sbjct: 384 LYYVAESFNDAKEKVRNFAATIPRPFSVHYDPYTQRIEVLDNTQQLKILADSISSEVEIL 443

Query: 119 LTSLKKI 125
            ++L+K+
Sbjct: 444 CSALQKL 450

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 6

EC: .

EC: 1

>sp|P18459|TY3H_DROME Tyrosine 3-monooxygenase OS=Drosophila melanogaster GN=ple PE=2 SV=2

 Score =  139 bits (351), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 68/130 (52%), Positives = 92/130 (70%), Gaps = 9/130 (6%)

Query: 5   SLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITE 64
           S  YWFTVEFGLC++ GQ+KA+GAGLLSS+GEL + +SDK + + FEP+ TA+Q Y   E
Sbjct: 446 STVYWFTVEFGLCKEHGQIKAYGAGLLSSYGELLHAISDKCEHRAFEPASTAVQPYQDQE 505

Query: 65  YQPLYFVAESFEDAKDKMM---------FGVRYNPYTQSVDVIDSKVQLSELVQNINGEM 115
           YQP+Y+VAESFEDAKDK           F VR+NP+T+ V+V+DS  +L  LV  +N E+
Sbjct: 506 YQPIYYVAESFEDAKDKFRRWVSTMSRPFEVRFNPHTERVEVLDSVDKLETLVHQMNTEI 565

Query: 116 QILLTSLKKI 125
             L  ++ K+
Sbjct: 566 LHLTNAISKL 575

Plays an important role in the physiology of adrenergic neurons.

Drosophila melanogaster (taxid: 7227)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 6

EC: .

EC: 2

>sp|P90925|PH4H_CAEEL Probable phenylalanine-4-hydroxylase 1 OS=Caenorhabditis elegans GN=pah-1 PE=1 SV=2

 Score =  138 bits (348), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 65/127 (51%), Positives = 88/127 (69%), Gaps = 9/127 (7%)

Query: 8   YWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQP 67
           YWFT+EFG+C+Q+G+ KA+GAGLLSSFGELQY LSDKP+   F+P+V  +  YPITEYQP
Sbjct: 325 YWFTIEFGICQQDGEKKAYGAGLLSSFGELQYALSDKPEVVDFDPAVCCVTKYPITEYQP 384

Query: 68  LYFVAESFEDAKDKMM---------FGVRYNPYTQSVDVIDSKVQLSELVQNINGEMQIL 118
            YF+AESF  AK+K+          F +RYN YTQ V+++D    L  L ++I  ++  L
Sbjct: 385 KYFLAESFASAKNKLKSWAATINRPFQIRYNAYTQRVEILDKVAALQRLARDIRSDISTL 444

Query: 119 LTSLKKI 125
             +L K+
Sbjct: 445 EEALGKV 451

Caenorhabditis elegans (taxid: 6239)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 6

EC: .

EC: 1

>sp|P17289|TY3H_BOVIN Tyrosine 3-monooxygenase OS=Bos taurus GN=TH PE=1 SV=5

 Score =  130 bits (328), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 62/130 (47%), Positives = 87/130 (66%), Gaps = 9/130 (6%)

Query: 5   SLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITE 64
           S  YWFTVEFGLC+Q G++KA+GAGLLSS+GEL + LS++P+ + F+P   A+Q Y    
Sbjct: 361 STLYWFTVEFGLCKQNGEVKAYGAGLLSSYGELLHSLSEEPEIRAFDPDAAAVQPYQDQT 420

Query: 65  YQPLYFVAESFEDAKDKMM---------FGVRYNPYTQSVDVIDSKVQLSELVQNINGEM 115
           YQP+YFV+ESF DAKDK+          F V+++PYT ++DV+DS   +   +  +  EM
Sbjct: 421 YQPVYFVSESFSDAKDKLRSYASRIQRPFSVKFDPYTLAIDVLDSPHAIRHALDGVQDEM 480

Query: 116 QILLTSLKKI 125
           Q L  +L  I
Sbjct: 481 QALAHALNAI 490

Plays an important role in the physiology of adrenergic neurons.

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 6

EC: .

EC: 2

>sp|Q54XS1|PH4H_DICDI Phenylalanine-4-hydroxylase OS=Dictyostelium discoideum GN=pah PE=1 SV=1

 Score =  130 bits (326), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 59/130 (45%), Positives = 90/130 (69%), Gaps = 9/130 (6%)

Query: 5   SLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITE 64
           S CYWFTVEFGLC++   ++A+GAG+LSS GE+++ L+DK ++ PF P       YPIT 
Sbjct: 310 STCYWFTVEFGLCKEGDTIRAYGAGILSSTGEMEHFLTDKAKKLPFNPFDACNTEYPITT 369

Query: 65  YQPLYFVAESFEDAKDKMM---------FGVRYNPYTQSVDVIDSKVQLSELVQNINGEM 115
           +QPLY+VAESF+ AK++M          F +RYNPYTQS++++D+K +L  +  +I  + 
Sbjct: 370 FQPLYYVAESFQKAKEQMRQFADSFKKPFSIRYNPYTQSIEILDNKDKLLNICNDIRNQS 429

Query: 116 QILLTSLKKI 125
           +IL  ++ K+
Sbjct: 430 EILADAISKL 439

Hydroxylates L-tryptophan to 5-hydroxy-L-tryptophan but does not hydroxylate L-tyrosine to L-DOPA. It uses D-threo-tetrahydrodictyopterin (DH4), also known as dictyoperin, as a cofactor.

Dictyostelium discoideum (taxid: 44689)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 6

EC: .

EC: 4

>sp|P04177|TY3H_RAT Tyrosine 3-monooxygenase OS=Rattus norvegicus GN=Th PE=1 SV=3

 Score =  130 bits (326), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 61/130 (46%), Positives = 87/130 (66%), Gaps = 9/130 (6%)

Query: 5   SLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITE 64
           S  YWFTVEFGLC+Q G+LKA+GAGLLSS+GEL + LS++P+ + F+P   A+Q Y    
Sbjct: 368 STVYWFTVEFGLCKQNGELKAYGAGLLSSYGELLHSLSEEPEVRAFDPDTAAVQPYQDQT 427

Query: 65  YQPLYFVAESFEDAKDKMM---------FGVRYNPYTQSVDVIDSKVQLSELVQNINGEM 115
           YQP+YFV+ESF DAKDK+          F V+++PYT ++DV+DS   +   ++ +  E+
Sbjct: 428 YQPVYFVSESFNDAKDKLRNYASRIQRPFSVKFDPYTLAIDVLDSPHTIQRSLEGVQDEL 487

Query: 116 QILLTSLKKI 125
             L  +L  I
Sbjct: 488 HTLAHALSAI 497

Plays an important role in the physiology of adrenergic neurons.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 6

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	125
242017617	433	tyrosine/tryptophan monooxygenase, putat	0.968	0.279	0.7	1e-47
325302235	455	phenylalanine-tryptophan hydroxylase [Gr	0.952	0.261	0.679	7e-47
307168571	439	Protein henna [Camponotus floridanus]	0.952	0.271	0.656	6e-46
340719082	494	PREDICTED: protein henna-like [Bombus te	0.968	0.244	0.646	1e-45
350423313	464	PREDICTED: protein henna-like [Bombus im	0.968	0.260	0.646	1e-45
389885660	447	phenylalanine hydroxylase [Polyrhachis v	0.952	0.266	0.640	2e-45
383859706	464	PREDICTED: protein henna-like [Megachile	0.968	0.260	0.646	1e-44
84095074	457	phenylalanine hydroxylase [Papilio xuthu	0.952	0.260	0.632	3e-44
307193315	464	Protein henna [Harpegnathos saltator]	0.952	0.256	0.632	5e-44
193591716	452	PREDICTED: protein henna-like [Acyrthosi	0.952	0.263	0.664	5e-44

>gi|242017617|ref|XP_002429284.1| tyrosine/tryptophan monooxygenase, putative [Pediculus humanus corporis] gi|212514180|gb|EEB16546.1| tyrosine/tryptophan monooxygenase, putative [Pediculus humanus corporis]

 Score =  193 bits (490), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 91/130 (70%), Positives = 110/130 (84%), Gaps = 9/130 (6%)

Query: 5   SLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITE 64
           + CYWFTVEFGLC Q+G LKA+GAGLLSSFGELQYCLSDKPQ KPFEP++TA Q+YPITE
Sbjct: 304 ATCYWFTVEFGLCSQDGHLKAYGAGLLSSFGELQYCLSDKPQLKPFEPTITAEQSYPITE 363

Query: 65  YQPLYFVAESFEDAKDKMM---------FGVRYNPYTQSVDVIDSKVQLSELVQNINGEM 115
           YQPLYFVAESFE+AK+K++         FGVRYNPYT++VD++DSK QL ELV+ I+ EM
Sbjct: 364 YQPLYFVAESFENAKEKIIKYAQTIPRPFGVRYNPYTETVDILDSKPQLQELVRKISLEM 423

Query: 116 QILLTSLKKI 125
           QIL  +L+K+
Sbjct: 424 QILTDALRKL 433

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|325302235|dbj|BAJ83477.1| phenylalanine-tryptophan hydroxylase [Gryllus bimaculatus]

 Score =  191 bits (484), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 87/128 (67%), Positives = 107/128 (83%), Gaps = 9/128 (7%)

Query: 7   CYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQ 66
           C+WFT E+GLC+Q+GQLKA+GAGLLSSFGELQYCLSDKP+ +PFEP+ TALQ YPITEYQ
Sbjct: 328 CFWFTAEYGLCKQDGQLKAYGAGLLSSFGELQYCLSDKPELRPFEPAKTALQKYPITEYQ 387

Query: 67  PLYFVAESFEDAKDKMM---------FGVRYNPYTQSVDVIDSKVQLSELVQNINGEMQI 117
           P+YFVAESFE+AK+KM+         FGVRYN YTQS++++DSK Q+  LV  I+ EMQI
Sbjct: 388 PVYFVAESFENAKEKMIKYAHTIPRPFGVRYNAYTQSIEILDSKPQIENLVDGIHHEMQI 447

Query: 118 LLTSLKKI 125
           LL +LKK+
Sbjct: 448 LLNALKKL 455

Source: Gryllus bimaculatus

Species: Gryllus bimaculatus

Genus: Gryllus

Family: Gryllidae

Order: Orthoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307168571|gb|EFN61629.1| Protein henna [Camponotus floridanus]

 Score =  187 bits (475), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 84/128 (65%), Positives = 107/128 (83%), Gaps = 9/128 (7%)

Query: 7   CYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQ 66
           C+WFTVE+GLCRQ G+LKAFGAGLLSSFGEL+YCLSDKP+ +PF+P  TALQ YPITEYQ
Sbjct: 310 CFWFTVEYGLCRQNGELKAFGAGLLSSFGELEYCLSDKPELRPFDPPKTALQKYPITEYQ 369

Query: 67  PLYFVAESFEDAKDKMM---------FGVRYNPYTQSVDVIDSKVQLSELVQNINGEMQI 117
           P+Y+VAE+FEDAK+KM          FGVRY+ YTQS+++IDSK Q+ +LV N+N E+QI
Sbjct: 370 PVYYVAENFEDAKEKMTKFAETIPKKFGVRYDAYTQSINIIDSKQQVEDLVNNVNQEIQI 429

Query: 118 LLTSLKKI 125
           L+ +L+K+
Sbjct: 430 LMDALRKL 437

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340719082|ref|XP_003397986.1| PREDICTED: protein henna-like [Bombus terrestris]

 Score =  187 bits (474), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 84/130 (64%), Positives = 109/130 (83%), Gaps = 9/130 (6%)

Query: 5   SLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITE 64
           + C+WFTVE+GLC+Q G+LKA+GAGLLSSFGEL+YCLSDKP+ +PFEP+ TALQ YPITE
Sbjct: 363 ATCFWFTVEYGLCQQNGELKAYGAGLLSSFGELEYCLSDKPELRPFEPAKTALQKYPITE 422

Query: 65  YQPLYFVAESFEDAKDKMM---------FGVRYNPYTQSVDVIDSKVQLSELVQNINGEM 115
           YQP+Y+VAE+FEDAK KM+         FGVRY+PYTQS+ +IDSK Q+ +LV N+N E+
Sbjct: 423 YQPVYYVAENFEDAKQKMIKFTESIPRKFGVRYDPYTQSISIIDSKHQIEDLVHNVNQEV 482

Query: 116 QILLTSLKKI 125
           QIL+ +L+K+
Sbjct: 483 QILMDALRKL 492

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350423313|ref|XP_003493441.1| PREDICTED: protein henna-like [Bombus impatiens]

 Score =  186 bits (472), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 84/130 (64%), Positives = 109/130 (83%), Gaps = 9/130 (6%)

Query: 5   SLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITE 64
           + C+WFTVE+GLC+Q G+LKA+GAGLLSSFGEL+YCLSDKP+ +PFEP+ TALQ YPITE
Sbjct: 333 ATCFWFTVEYGLCQQNGELKAYGAGLLSSFGELEYCLSDKPELRPFEPAKTALQKYPITE 392

Query: 65  YQPLYFVAESFEDAKDKMM---------FGVRYNPYTQSVDVIDSKVQLSELVQNINGEM 115
           YQP+Y+VAE+FEDAK KM+         FGVRY+PYTQS+ +IDSK Q+ +LV N+N E+
Sbjct: 393 YQPVYYVAENFEDAKQKMIKFTESIPRKFGVRYDPYTQSISIIDSKHQIEDLVHNVNQEV 452

Query: 116 QILLTSLKKI 125
           QIL+ +L+K+
Sbjct: 453 QILMDALRKL 462

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389885660|gb|AFL02790.1| phenylalanine hydroxylase [Polyrhachis vicina]

 Score =  186 bits (471), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 82/128 (64%), Positives = 108/128 (84%), Gaps = 9/128 (7%)

Query: 7   CYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQ 66
           C+WFTVE+GLCRQ G+LKA+GAGLLSS+GEL+YCLSDKP+ +PF+P+ TALQ YPITEYQ
Sbjct: 318 CFWFTVEYGLCRQNGELKAYGAGLLSSYGELEYCLSDKPELRPFDPAKTALQKYPITEYQ 377

Query: 67  PLYFVAESFEDAKDKMM---------FGVRYNPYTQSVDVIDSKVQLSELVQNINGEMQI 117
           P+Y+VAE+FEDAK+KM          FGVRY+ YTQS+++IDSK Q+ +LV N+N E+QI
Sbjct: 378 PVYYVAENFEDAKEKMTKFAQTIPKKFGVRYDAYTQSINIIDSKQQVEDLVNNVNQEIQI 437

Query: 118 LLTSLKKI 125
           L+ +L+K+
Sbjct: 438 LMDALRKL 445

Source: Polyrhachis vicina

Species: Polyrhachis vicina

Genus: Polyrhachis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383859706|ref|XP_003705333.1| PREDICTED: protein henna-like [Megachile rotundata]

 Score =  183 bits (464), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 84/130 (64%), Positives = 106/130 (81%), Gaps = 9/130 (6%)

Query: 5   SLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITE 64
           + C+WFTVE+G+CRQ G+LKA+GAGLLSSFGEL+Y LS KP+ +PFEP+ TALQ YPITE
Sbjct: 333 ATCFWFTVEYGICRQNGELKAYGAGLLSSFGELEYSLSGKPELRPFEPTKTALQKYPITE 392

Query: 65  YQPLYFVAESFEDAKDKMM---------FGVRYNPYTQSVDVIDSKVQLSELVQNINGEM 115
           YQP+YFVAE FEDAK KM+         FGVRY+PYTQS+ +IDSK Q+ EL+ N+N E+
Sbjct: 393 YQPVYFVAEDFEDAKQKMIKFAESIPRKFGVRYDPYTQSISIIDSKYQIEELIYNVNQEV 452

Query: 116 QILLTSLKKI 125
           QIL+ +LKK+
Sbjct: 453 QILMDALKKL 462

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|84095074|dbj|BAE66652.1| phenylalanine hydroxylase [Papilio xuthus]

 Score =  182 bits (461), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 81/128 (63%), Positives = 103/128 (80%), Gaps = 9/128 (7%)

Query: 7   CYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQ 66
           C+WFTVEFGLCRQEG +KAFGAGLLSSFGELQYCLSD+P+ + FEP +T  Q YPITEYQ
Sbjct: 330 CFWFTVEFGLCRQEGNIKAFGAGLLSSFGELQYCLSDEPELREFEPELTGEQKYPITEYQ 389

Query: 67  PLYFVAESFEDAKDKMM---------FGVRYNPYTQSVDVIDSKVQLSELVQNINGEMQI 117
           P+Y+VAESFE AKDKM+         FGVRYNPYTQS+D++DS  Q+ +L++ ++ EM +
Sbjct: 390 PIYYVAESFESAKDKMIKFAQTIPRDFGVRYNPYTQSIDILDSPKQMKDLLKEVHQEMGL 449

Query: 118 LLTSLKKI 125
           LL ++ K+
Sbjct: 450 LLNTMDKL 457

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307193315|gb|EFN76177.1| Protein henna [Harpegnathos saltator]

 Score =  181 bits (459), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 81/128 (63%), Positives = 106/128 (82%), Gaps = 9/128 (7%)

Query: 7   CYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQ 66
           C+WFTVE+GLC Q G+LKA+GAGLLSS+GEL+YCLSDKP+ +PF+P  TA+Q YPITEYQ
Sbjct: 335 CFWFTVEYGLCLQNGELKAYGAGLLSSYGELEYCLSDKPELRPFDPPKTAMQKYPITEYQ 394

Query: 67  PLYFVAESFEDAKDKMM---------FGVRYNPYTQSVDVIDSKVQLSELVQNINGEMQI 117
           P+YFVAE+FEDAK++M+         FGVRY+PYTQS+++IDSK Q+  L  N+N E+QI
Sbjct: 395 PVYFVAENFEDAKERMIKFAQTIPRKFGVRYDPYTQSINIIDSKQQVETLANNLNQEVQI 454

Query: 118 LLTSLKKI 125
           L+ SL+K+
Sbjct: 455 LVDSLRKL 462

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193591716|ref|XP_001945589.1| PREDICTED: protein henna-like [Acyrthosiphon pisum]

 Score =  181 bits (459), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 85/128 (66%), Positives = 100/128 (78%), Gaps = 9/128 (7%)

Query: 7   CYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQ 66
           CYWFTVEFGLCRQ G+LKA+GAGLLSS GELQY LS KP+ KPF+P VT  Q YPITEYQ
Sbjct: 324 CYWFTVEFGLCRQNGELKAYGAGLLSSIGELQYSLSGKPELKPFDPEVTGNQEYPITEYQ 383

Query: 67  PLYFVAESFEDAKDKMM---------FGVRYNPYTQSVDVIDSKVQLSELVQNINGEMQI 117
           P YFVAESF+D KDK++         FG+RYNPYTQ+V V+DSK+QL EL  NI+ E+QI
Sbjct: 384 PTYFVAESFDDVKDKLIKFARTIPKQFGIRYNPYTQNVQVLDSKLQLQELANNISNELQI 443

Query: 118 LLTSLKKI 125
           L  +L K+
Sbjct: 444 LRYTLNKM 451

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	125
FB|FBgn0001208	452	Hn "Henna" [Drosophila melanog	0.968	0.267	0.615	1.4e-39
ZFIN|ZDB-GENE-031006-2	449	pah "phenylalanine hydroxylase	0.944	0.262	0.582	1.3e-36
UNIPROTKB|E2R366	451	PAH "Uncharacterized protein"	0.944	0.261	0.582	8.3e-35
UNIPROTKB|F6XY00	581	PAH "Uncharacterized protein"	0.944	0.203	0.582	1.7e-34
UNIPROTKB|J3KND8	447	PAH "Phenylalanine-4-hydroxyla	0.944	0.263	0.574	1.7e-34
UNIPROTKB|P00439	452	PAH "Phenylalanine-4-hydroxyla	0.944	0.261	0.574	1.7e-34
RGD|3248	453	Pah "phenylalanine hydroxylase	0.944	0.260	0.582	3.6e-34
UNIPROTKB|Q6PKI8	446	PAH "Phenylalanine hydroxylase	0.944	0.264	0.574	4.6e-34
UNIPROTKB|Q2KIH7	451	PAH "Phenylalanine-4-hydroxyla	0.944	0.261	0.566	5.8e-34
MGI|MGI:97473	453	Pah "phenylalanine hydroxylase	0.944	0.260	0.582	5.8e-34

FB|FBgn0001208 Hn "Henna" [Drosophila melanogaster (taxid:7227)]

 Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
 Identities = 80/130 (61%), Positives = 102/130 (78%)

Query:     5 SLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITE 64
             S  +WFTVE+G+CRQEG+LKA+GAGLLSS+GEL+YCL+DKPQ K FEP VT +  YPIT+
Sbjct:   321 STIFWFTVEYGVCRQEGELKAYGAGLLSSYGELEYCLTDKPQLKDFEPEVTGVTKYPITQ 380

Query:    65 YQPLYFVAESFEDAKDKMM---------FGVRYNPYTQSVDVIDSKVQLSELVQNINGEM 115
             +QPLY+VA+SFE AK+K +         FGVRYN YTQSV+V+DSK Q+S L+ NIN E 
Sbjct:   381 FQPLYYVADSFETAKEKTIKFANSIPRPFGVRYNAYTQSVEVLDSKPQISNLMDNINSEF 440

Query:   116 QILLTSLKKI 125
             QIL  ++ K+
Sbjct:   441 QILQNAVAKL 450

GO:0004505 "phenylalanine 4-monooxygenase activity" evidence=ISS;NAS;IDA;IMP

GO:0006559 "L-phenylalanine catabolic process" evidence=NAS;IMP

GO:0006726 "eye pigment biosynthetic process" evidence=IDA

GO:0004510 "tryptophan 5-monooxygenase activity" evidence=NAS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005506 "iron ion binding" evidence=IEA

GO:0006911 "phagocytosis, engulfment" evidence=IMP

GO:0005811 "lipid particle" evidence=IDA

GO:0007616 "long-term memory" evidence=IGI

ZFIN|ZDB-GENE-031006-2 pah "phenylalanine hydroxylase" [Danio rerio (taxid:7955)]

 Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
 Identities = 74/127 (58%), Positives = 97/127 (76%)

Query:     8 YWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQP 67
             YWFTVEFGLC+Q  ++KA+GAGLLSSFGELQYCL+++P+ +PFEP  T  Q YPITE+QP
Sbjct:   323 YWFTVEFGLCKQGNEVKAYGAGLLSSFGELQYCLTNEPKLQPFEPEKTCQQKYPITEFQP 382

Query:    68 LYFVAESFEDAKDKMM---------FGVRYNPYTQSVDVIDSKVQLSELVQNINGEMQIL 118
             +YFVAESFEDAK+K+          F VRYN YTQ ++++D+  QL  L  +INGE+ IL
Sbjct:   383 VYFVAESFEDAKEKVRRFATTIPRPFSVRYNAYTQRIEMLDNAQQLKNLADSINGEISIL 442

Query:   119 LTSLKKI 125
               +L+K+
Sbjct:   443 CNALRKM 449

GO:0016714 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced pteridine as one donor, and incorporation of one atom of oxygen" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004505 "phenylalanine 4-monooxygenase activity" evidence=IEA

GO:0006559 "L-phenylalanine catabolic process" evidence=IEA

GO:0009072 "aromatic amino acid family metabolic process" evidence=IEA

GO:0004497 "monooxygenase activity" evidence=IEA

GO:0005506 "iron ion binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA

GO:0042221 "response to chemical stimulus" evidence=IDA

UNIPROTKB|E2R366 PAH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
 Identities = 74/127 (58%), Positives = 94/127 (74%)

Query:     8 YWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQP 67
             YWFTVEFGLC+Q   +KA+GAGLLSSFGELQYCLSDKP+  P E   TA+Q Y +TE+QP
Sbjct:   324 YWFTVEFGLCKQGDSIKAYGAGLLSSFGELQYCLSDKPKLLPLELEKTAIQEYTVTEFQP 383

Query:    68 LYFVAESFEDAKDKMM---------FGVRYNPYTQSVDVIDSKVQLSELVQNINGEMQIL 118
             LY+VAESF DAK+K+          F VRY+PYTQ ++V+D+  QL  L  +IN E+ IL
Sbjct:   384 LYYVAESFNDAKEKVRNFAATIPRPFSVRYDPYTQRIEVLDNTQQLKILADSINSEVGIL 443

Query:   119 LTSLKKI 125
              ++L+KI
Sbjct:   444 CSALQKI 450

GO:0004505 "phenylalanine 4-monooxygenase activity" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA

GO:0006559 "L-phenylalanine catabolic process" evidence=IEA

GO:0005506 "iron ion binding" evidence=IEA

UNIPROTKB|F6XY00 PAH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 377 (137.8 bits), Expect = 1.7e-34, P = 1.7e-34
 Identities = 74/127 (58%), Positives = 94/127 (74%)

Query:     8 YWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQP 67
             YWFTVEFGLC+Q   +KA+GAGLLSSFGELQYCLSDKP+  P E   TA+Q Y +TE+QP
Sbjct:   454 YWFTVEFGLCKQGDSIKAYGAGLLSSFGELQYCLSDKPKLLPLELEKTAIQEYTVTEFQP 513

Query:    68 LYFVAESFEDAKDKMM---------FGVRYNPYTQSVDVIDSKVQLSELVQNINGEMQIL 118
             LY+VAESF DAK+K+          F VRY+PYTQ ++V+D+  QL  L  +IN E+ IL
Sbjct:   514 LYYVAESFNDAKEKVRNFAATIPRPFSVRYDPYTQRIEVLDNTQQLKILADSINSEVGIL 573

Query:   119 LTSLKKI 125
              ++L+KI
Sbjct:   574 CSALQKI 580

GO:0016597 "amino acid binding" evidence=IEA

GO:0006559 "L-phenylalanine catabolic process" evidence=IEA

GO:0005506 "iron ion binding" evidence=IEA

GO:0004505 "phenylalanine 4-monooxygenase activity" evidence=IEA

UNIPROTKB|J3KND8 PAH "Phenylalanine-4-hydroxylase" [Homo sapiens (taxid:9606)]

 Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
 Identities = 73/127 (57%), Positives = 94/127 (74%)

Query:     8 YWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQP 67
             YWFTVEFGLC+Q   +KA+GAGLLSSFGELQYCLS+KP+  P E   TA+Q Y +TE+QP
Sbjct:   320 YWFTVEFGLCKQGDSIKAYGAGLLSSFGELQYCLSEKPKLLPLELEKTAIQNYTVTEFQP 379

Query:    68 LYFVAESFEDAKDKMM---------FGVRYNPYTQSVDVIDSKVQLSELVQNINGEMQIL 118
             LY+VAESF DAK+K+          F VRY+PYTQ ++V+D+  QL  L  +IN E+ IL
Sbjct:   380 LYYVAESFNDAKEKVRNFAATIPRPFSVRYDPYTQRIEVLDNTQQLKILADSINSEIGIL 439

Query:   119 LTSLKKI 125
              ++L+KI
Sbjct:   440 CSALQKI 446

GO:0004505 "phenylalanine 4-monooxygenase activity" evidence=IEA

GO:0005506 "iron ion binding" evidence=IEA

GO:0006559 "L-phenylalanine catabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA

UNIPROTKB|P00439 PAH "Phenylalanine-4-hydroxylase" [Homo sapiens (taxid:9606)]

 Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
 Identities = 73/127 (57%), Positives = 94/127 (74%)

Query:     8 YWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQP 67
             YWFTVEFGLC+Q   +KA+GAGLLSSFGELQYCLS+KP+  P E   TA+Q Y +TE+QP
Sbjct:   325 YWFTVEFGLCKQGDSIKAYGAGLLSSFGELQYCLSEKPKLLPLELEKTAIQNYTVTEFQP 384

Query:    68 LYFVAESFEDAKDKMM---------FGVRYNPYTQSVDVIDSKVQLSELVQNINGEMQIL 118
             LY+VAESF DAK+K+          F VRY+PYTQ ++V+D+  QL  L  +IN E+ IL
Sbjct:   385 LYYVAESFNDAKEKVRNFAATIPRPFSVRYDPYTQRIEVLDNTQQLKILADSINSEIGIL 444

Query:   119 LTSLKKI 125
              ++L+KI
Sbjct:   445 CSALQKI 451

GO:0005506 "iron ion binding" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA

GO:0006559 "L-phenylalanine catabolic process" evidence=IEA;TAS

GO:0008652 "cellular amino acid biosynthetic process" evidence=TAS

GO:0004505 "phenylalanine 4-monooxygenase activity" evidence=EXP

GO:0005829 "cytosol" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0042136 "neurotransmitter biosynthetic process" evidence=NAS

GO:0042423 "catecholamine biosynthetic process" evidence=NAS

RGD|3248 Pah "phenylalanine hydroxylase" [Rattus norvegicus (taxid:10116)]

 Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
 Identities = 74/127 (58%), Positives = 92/127 (72%)

Query:     8 YWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQP 67
             YWFTVEFGLC++   +KA+GAGLLSSFGELQYCLSDKP+  P E   TA Q Y +TE+QP
Sbjct:   325 YWFTVEFGLCKEGDSIKAYGAGLLSSFGELQYCLSDKPKLLPLELEKTACQEYSVTEFQP 384

Query:    68 LYFVAESFEDAKDKMM---------FGVRYNPYTQSVDVIDSKVQLSELVQNINGEMQIL 118
             LY+VAESF DAK+K+          F VRY+PYTQ V+V+D+  QL  L  +IN E+ IL
Sbjct:   385 LYYVAESFSDAKEKVRTFAATIPRPFSVRYDPYTQRVEVLDNTQQLKILADSINSEVGIL 444

Query:   119 LTSLKKI 125
               +L+KI
Sbjct:   445 CNALQKI 451

GO:0004505 "phenylalanine 4-monooxygenase activity" evidence=IEA;ISO;IDA

GO:0005506 "iron ion binding" evidence=IEA;IDA

GO:0006558 "L-phenylalanine metabolic process" evidence=IDA

GO:0006559 "L-phenylalanine catabolic process" evidence=IEA

GO:0006571 "tyrosine biosynthetic process" evidence=IDA

GO:0016597 "amino acid binding" evidence=IEA;IDA

GO:0018126 "protein hydroxylation" evidence=IDA

GO:0042558 "pteridine-containing compound metabolic process" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0046146 "tetrahydrobiopterin metabolic process" evidence=IDA

GO:0048037 "cofactor binding" evidence=IDA

GO:0055114 "oxidation-reduction process" evidence=ISO

UNIPROTKB|Q6PKI8 PAH "Phenylalanine hydroxylase" [Gallus gallus (taxid:9031)]

 Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
 Identities = 73/127 (57%), Positives = 90/127 (70%)

Query:     8 YWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQP 67
             YWFTVEFGLC++   LKA+GAGLLSSFGELQYCLS KP+ +P     T++Q Y +TE+QP
Sbjct:   319 YWFTVEFGLCKEGDSLKAYGAGLLSSFGELQYCLSGKPEIRPLVLENTSVQKYSVTEFQP 378

Query:    68 LYFVAESFEDAKDKMM---------FGVRYNPYTQSVDVIDSKVQLSELVQNINGEMQIL 118
              YFVAESF DAK+K+          F VRYNPYTQ ++V+D+  QL  L   IN EM IL
Sbjct:   379 TYFVAESFNDAKEKLRKFAQTIPRPFSVRYNPYTQRIEVLDNAKQLKNLADTINSEMGIL 438

Query:   119 LTSLKKI 125
               +L+KI
Sbjct:   439 CNALQKI 445

GO:0005506 "iron ion binding" evidence=IEA

GO:0006559 "L-phenylalanine catabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA

GO:0004505 "phenylalanine 4-monooxygenase activity" evidence=IEA

UNIPROTKB|Q2KIH7 PAH "Phenylalanine-4-hydroxylase" [Bos taurus (taxid:9913)]

 Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
 Identities = 72/127 (56%), Positives = 94/127 (74%)

Query:     8 YWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQP 67
             YWFTVEFGLC+Q   +KA+GAGLLSSFGELQYCLSDKP+  P E   TA+Q Y ITE+QP
Sbjct:   324 YWFTVEFGLCKQGDSIKAYGAGLLSSFGELQYCLSDKPKLLPLELEKTAVQEYTITEFQP 383

Query:    68 LYFVAESFEDAKDKMM---------FGVRYNPYTQSVDVIDSKVQLSELVQNINGEMQIL 118
             LY+VAESF DAK+K+          F V Y+PYTQ ++V+D+  QL  L  +I+ E++IL
Sbjct:   384 LYYVAESFNDAKEKVRNFAATIPRPFSVHYDPYTQRIEVLDNTQQLKILADSISSEVEIL 443

Query:   119 LTSLKKI 125
              ++L+K+
Sbjct:   444 CSALQKL 450

GO:0006559 "L-phenylalanine catabolic process" evidence=IEA

GO:0004505 "phenylalanine 4-monooxygenase activity" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA

GO:0005506 "iron ion binding" evidence=IEA

MGI|MGI:97473 Pah "phenylalanine hydroxylase" [Mus musculus (taxid:10090)]

 Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
 Identities = 74/127 (58%), Positives = 92/127 (72%)

Query:     8 YWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQP 67
             YWFTVEFGLC++   +KA+GAGLLSSFGELQYCLSDKP+  P E   TA Q Y +TE+QP
Sbjct:   325 YWFTVEFGLCKEGDSIKAYGAGLLSSFGELQYCLSDKPKLLPLELEKTACQEYTVTEFQP 384

Query:    68 LYFVAESFEDAKDKMM---------FGVRYNPYTQSVDVIDSKVQLSELVQNINGEMQIL 118
             LY+VAESF DAK+K+          F VRY+PYTQ V+V+D+  QL  L  +IN E+ IL
Sbjct:   385 LYYVAESFNDAKEKVRTFAATIPRPFSVRYDPYTQRVEVLDNTQQLKILADSINSEVGIL 444

Query:   119 LTSLKKI 125
               +L+KI
Sbjct:   445 CHALQKI 451

GO:0003824 "catalytic activity" evidence=IEA

GO:0004497 "monooxygenase activity" evidence=IEA

GO:0004505 "phenylalanine 4-monooxygenase activity" evidence=ISO;IMP

GO:0005506 "iron ion binding" evidence=ISO

GO:0006558 "L-phenylalanine metabolic process" evidence=ISO

GO:0006559 "L-phenylalanine catabolic process" evidence=IEA

GO:0006571 "tyrosine biosynthetic process" evidence=ISO

GO:0008152 "metabolic process" evidence=IEA

GO:0009072 "aromatic amino acid family metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016597 "amino acid binding" evidence=ISO

GO:0016714 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced pteridine as one donor, and incorporation of one atom of oxygen" evidence=IEA

GO:0018126 "protein hydroxylation" evidence=ISO

GO:0042558 "pteridine-containing compound metabolic process" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0046146 "tetrahydrobiopterin metabolic process" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0048037 "cofactor binding" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=ISO;IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q2KIH7	PH4H_BOVIN	1, ., 1, 4, ., 1, 6, ., 1	0.5669	0.944	0.2616	yes	N/A
P16331	PH4H_MOUSE	1, ., 1, 4, ., 1, 6, ., 1	0.5826	0.944	0.2604	yes	N/A
P04176	PH4H_RAT	1, ., 1, 4, ., 1, 6, ., 1	0.5826	0.944	0.2604	yes	N/A
P00439	PH4H_HUMAN	1, ., 1, 4, ., 1, 6, ., 1	0.5748	0.944	0.2610	yes	N/A
P90925	PH4H_CAEEL	1, ., 1, 4, ., 1, 6, ., 1	0.5118	0.944	0.2582	yes	N/A
P17276	PH4H_DROME	1, ., 1, 4, ., 1, 6, ., 4	0.6153	0.968	0.2676	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.14.16	LOW CONFIDENCE prediction!
4th Layer	1.14.16.1	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	125
TIGR01268	436	TIGR01268, Phe4hydrox_tetr, phenylalanine-4-hydrox	3e-65
cd03347	306	cd03347, eu_PheOH, Eukaryotic phenylalanine-4-hydr	3e-54
pfam00351	306	pfam00351, Biopterin_H, Biopterin-dependent aromat	3e-53
cd00361	221	cd00361, arom_aa_hydroxylase, Biopterin-dependent	1e-45
TIGR01269	457	TIGR01269, Tyr_3_monoox, tyrosine 3-monooxygenase,	2e-44
cd03345	298	cd03345, eu_TyrOH, Eukaryotic tyrosine hydroxylase	4e-43
TIGR01270	464	TIGR01270, Trp_5_monoox, tryptophan 5-monooxygenas	1e-39
cd03346	287	cd03346, eu_TrpOH, Eukaryotic tryptophan hydroxyla	4e-32
PRK11913	275	PRK11913, phhA, phenylalanine 4-monooxygenase; Rev	2e-29
cd03348	228	cd03348, pro_PheOH, Prokaryotic phenylalanine-4-hy	3e-26
COG3186	291	COG3186, COG3186, Phenylalanine-4-hydroxylase [Ami	3e-20
TIGR01267	248	TIGR01267, Phe4hydrox_mono, phenylalanine-4-hydrox	1e-19
PRK14056	578	PRK14056, PRK14056, phenylalanine 4-monooxygenase;	2e-17
PRK14055	362	PRK14055, PRK14055, aromatic amino acid hydroxylas	6e-04

>gnl|CDD|130335 TIGR01268, Phe4hydrox_tetr, phenylalanine-4-hydroxylase, tetrameric form

 Score =  203 bits (518), Expect = 3e-65
 Identities = 75/127 (59%), Positives = 94/127 (74%), Gaps = 9/127 (7%)

Query: 8   YWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQP 67
           YWFT+EFGLC+Q+G+ KA+GAGLLSSFGELQYCLSDKP+   F+P VT +  YPITE+QP
Sbjct: 309 YWFTIEFGLCKQDGEKKAYGAGLLSSFGELQYCLSDKPEVVDFDPEVTCVTKYPITEFQP 368

Query: 68  LYFVAESFEDAKDKMM---------FGVRYNPYTQSVDVIDSKVQLSELVQNINGEMQIL 118
           LYF+AESFEDAK+K+          F VRYN YTQ V+++D K QL  L  +I  E+ IL
Sbjct: 369 LYFLAESFEDAKEKLKSFAATIPRPFSVRYNAYTQRVEILDKKAQLQRLADDIRSEISIL 428

Query: 119 LTSLKKI 125
             +L K+
Sbjct: 429 QEALGKL 435

This model describes the larger, tetrameric form of phenylalanine-4-hydroxylase, as found in metazoans. The enzyme irreversibly converts phenylalanine to tryosine and is known to be the rate-limiting step in phenylalanine catabolism in some systems. It is closely related to metazoan tyrosine 3-monooxygenase and tryptophan 5-monoxygenase, and more distantly to monomeric phenylalanine-4-hydroxylases of some Gram-negative bacteria. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PMID:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered. Length = 436

>gnl|CDD|239463 cd03347, eu_PheOH, Eukaryotic phenylalanine-4-hydroxylase (eu_PheOH); a member of the biopterin-dependent aromatic amino acid hydroxylase family of non-heme, iron(II)-dependent enzymes that also includes prokaryotic phenylalanine-4-hydroxylase (pro_PheOH), eukaryotic tyrosine hydroxylase (TyrOH) and eukaryotic tryptophan hydroxylase (TrpOH)

 Score =  171 bits (436), Expect = 3e-54
 Identities = 68/103 (66%), Positives = 81/103 (78%), Gaps = 9/103 (8%)

Query: 5   SLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITE 64
           +  YWFTVEFGLC+Q G +KA+GAGLLSSFGELQYCLSDKP+  PFEP  TA+  YPITE
Sbjct: 204 ATVYWFTVEFGLCKQGGSIKAYGAGLLSSFGELQYCLSDKPELLPFEPEKTAVTKYPITE 263

Query: 65  YQPLYFVAESFEDAKDKMM---------FGVRYNPYTQSVDVI 98
           +QPLY+VAESFEDAK+K+          F VRYNPYTQ ++V+
Sbjct: 264 FQPLYYVAESFEDAKEKLRNFAATIPRPFSVRYNPYTQRIEVL 306

PheOH catalyzes the first and rate-limiting step in the metabolism of the amino acid L-phenylalanine (L-Phe), the hydroxylation of L-Phe to L-tyrosine (L-Tyr). It uses (6R)-L-erythro-5,6,7,8-tetrahydrobiopterin (BH4) as the physiological electron donor. The catalytic activity of the tetrameric enzyme is tightly regulated by the binding of L-Phe and BH4 as well as by phosphorylation. Mutations in the human enzyme are linked to a severe variant of phenylketonuria. Length = 306

>gnl|CDD|201173 pfam00351, Biopterin_H, Biopterin-dependent aromatic amino acid hydroxylase

 Score =  168 bits (428), Expect = 3e-53
 Identities = 63/103 (61%), Positives = 79/103 (76%), Gaps = 9/103 (8%)

Query: 5   SLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITE 64
           S  YWFTVEFGLC+Q GQ+KA+GAGLLSS+GEL + LSDKP+ + FEP  TA+Q Y  TE
Sbjct: 204 STIYWFTVEFGLCKQNGQIKAYGAGLLSSYGELLHALSDKPELRAFEPEATAVQPYQDTE 263

Query: 65  YQPLYFVAESFEDAKDKMM---------FGVRYNPYTQSVDVI 98
           +QP+Y+VAESFEDAK+K+          F VRYNPYTQ ++V+
Sbjct: 264 FQPVYYVAESFEDAKEKLRNFASTIPRPFSVRYNPYTQRIEVL 306

This family includes phenylalanine-4-hydroxylase, the phenylketonuria disease protein. Length = 306

>gnl|CDD|238215 cd00361, arom_aa_hydroxylase, Biopterin-dependent aromatic amino acid hydroxylase; a family of non-heme, iron(II)-dependent enzymes that includes prokaryotic and eukaryotic phenylalanine-4-hydroxylase (PheOH), eukaryotic tyrosine hydroxylase (TyrOH) and eukaryotic tryptophan hydroxylase (TrpOH)

 Score =  146 bits (372), Expect = 1e-45
 Identities = 48/75 (64%), Positives = 59/75 (78%)

Query: 7   CYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQ 66
            YWFTVEFGL +++G+LKA+GAGLLSS+GELQ+ LSDKP+R PF+P   A   Y IT +Q
Sbjct: 147 LYWFTVEFGLIKEDGELKAYGAGLLSSYGELQHALSDKPKRIPFDPERVARTPYDITSFQ 206

Query: 67  PLYFVAESFEDAKDK 81
           P YFV ESFE  K+K
Sbjct: 207 PTYFVIESFEQLKEK 221

PheOH converts L-phenylalanine to L-tyrosine, an important step in phenylalanine catabolism and neurotransmitter biosynthesis, and is linked to a severe variant of phenylketonuria in humans. TyrOH and TrpOH are involved in the biosynthesis of catecholamine and serotonin, respectively. The eukaryotic enzymes are all homotetramers. Length = 221

>gnl|CDD|130336 TIGR01269, Tyr_3_monoox, tyrosine 3-monooxygenase, tetrameric

 Score =  150 bits (379), Expect = 2e-44
 Identities = 59/130 (45%), Positives = 87/130 (66%), Gaps = 9/130 (6%)

Query: 5   SLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITE 64
           S  YWFTVEFGLC++ G+ KA+GAGLLSS+GEL++  SD  +++PF P+  A+Q Y    
Sbjct: 327 STLYWFTVEFGLCKENGETKAYGAGLLSSYGELEHAFSDLSEKRPFNPNDAAVQPYQDQG 386

Query: 65  YQPLYFVAESFEDAKDKMM---------FGVRYNPYTQSVDVIDSKVQLSELVQNINGEM 115
           YQ +YFV ESFEDAK K+          F VR++P T++V+V+D   +  EL++++  E+
Sbjct: 387 YQKIYFVTESFEDAKRKLRNYINTSGRPFIVRFDPITETVEVLDRFSKRKELLKHVKEEI 446

Query: 116 QILLTSLKKI 125
             L T+L  +
Sbjct: 447 GQLTTALNHL 456

This model describes tyrosine 3-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tryptophan 5-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria. Length = 457

>gnl|CDD|239461 cd03345, eu_TyrOH, Eukaryotic tyrosine hydroxylase (TyrOH); a member of the biopterin-dependent aromatic amino acid hydroxylase family of non-heme, iron(II)-dependent enzymes that also includes prokaryotic and eukaryotic phenylalanine-4-hydroxylase (PheOH) and eukaryotic tryptophan hydroxylase (TrpOH)

 Score =  142 bits (360), Expect = 4e-43
 Identities = 56/96 (58%), Positives = 72/96 (75%), Gaps = 9/96 (9%)

Query: 5   SLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITE 64
           S  YWFTVEFGLC++ G+LKA+GAGLLSS+GEL + LSD+P+ +PF+P+ TA+Q Y    
Sbjct: 203 STLYWFTVEFGLCKENGELKAYGAGLLSSYGELLHALSDEPEHRPFDPAATAVQPYQDQT 262

Query: 65  YQPLYFVAESFEDAKDKMM---------FGVRYNPY 91
           YQP+YFV+ESF DAKDK+          F VRY+PY
Sbjct: 263 YQPIYFVSESFSDAKDKLRNYASTMKRPFSVRYDPY 298

TyrOH catalyzes the conversion of tyrosine to L-dihydroxyphenylalanine (L-DOPA), the rate-limiting step in the biosynthesis of the catecholamines dopamine, noradrenaline, and adrenaline. Length = 298

>gnl|CDD|130337 TIGR01270, Trp_5_monoox, tryptophan 5-monooxygenase, tetrameric

 Score =  137 bits (346), Expect = 1e-39
 Identities = 56/129 (43%), Positives = 79/129 (61%), Gaps = 10/129 (7%)

Query: 7   CYWFTVEFGLCRQ-EGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEY 65
            Y+FT+EFGLC+Q + Q K +GAGLLSS  ELQ+ LS   + KPF+P     Q   IT +
Sbjct: 335 LYFFTIEFGLCKQDDEQFKVYGAGLLSSVAELQHALSGSAKIKPFDPDRVCEQECLITTF 394

Query: 66  QPLYFVAESFEDAKDKMM---------FGVRYNPYTQSVDVIDSKVQLSELVQNINGEMQ 116
           Q  YF   SFE+AK+KM          FGVRYNPYT+SV+V+ +   ++  V  +  ++ 
Sbjct: 395 QNAYFYTRSFEEAKEKMREFTNTIKRPFGVRYNPYTESVEVLKNSKSITLAVNELRSDLN 454

Query: 117 ILLTSLKKI 125
           ++  +L KI
Sbjct: 455 LVAGALHKI 463

This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria [Energy metabolism, Amino acids and amines]. Length = 464

>gnl|CDD|239462 cd03346, eu_TrpOH, Eukaryotic tryptophan hydroxylase (TrpOH); a member of the biopterin-dependent aromatic amino acid hydroxylase family of non-heme, iron(II)-dependent enzymes that also includes prokaryotic and eukaryotic phenylalanine-4-hydroxylase (PheOH) and eukaryotic tyrosine hydroxylase (TyrOH)

 Score =  114 bits (286), Expect = 4e-32
 Identities = 48/76 (63%), Positives = 61/76 (80%)

Query: 7   CYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQ 66
           CY+FTVEFGLC+Q+GQLK +GAGLLSS GEL++ LS + + KPF+P VT  Q   IT +Q
Sbjct: 206 CYFFTVEFGLCKQDGQLKVYGAGLLSSIGELKHALSGEAKVKPFDPKVTCKQECLITTFQ 265

Query: 67  PLYFVAESFEDAKDKM 82
             YFV+ESFE+AK+KM
Sbjct: 266 EAYFVSESFEEAKEKM 281

TrpOH oxidizes L-tryptophan to 5-hydroxy-L-tryptophan, the rate-limiting step in the biosynthesis of serotonin (5-hydroxytryptamine), a widely distributed hormone and neurotransmitter. Length = 287

>gnl|CDD|237020 PRK11913, phhA, phenylalanine 4-monooxygenase; Reviewed

 Score =  106 bits (268), Expect = 2e-29
 Identities = 39/73 (53%), Positives = 48/73 (65%), Gaps = 3/73 (4%)

Query: 7   CYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCL-SDKPQRKPFEPSVTALQT-YPITE 64
            YWFTVEFGL R  G L+ +GAG+LSS GE  Y L SD P R+PF+     ++T Y I  
Sbjct: 169 LYWFTVEFGLIRTPGGLRIYGAGILSSPGETLYALESDSPNRRPFDL-ERVMRTPYRIDI 227

Query: 65  YQPLYFVAESFED 77
           +QP YFV +SFE 
Sbjct: 228 FQPTYFVIDSFEQ 240

Length = 275

>gnl|CDD|239464 cd03348, pro_PheOH, Prokaryotic phenylalanine-4-hydroxylase (pro_PheOH); a member of the biopterin-dependent aromatic amino acid hydroxylase family of non-heme, iron(II)-dependent enzymes that also includes the eukaryotic proteins, phenylalanine-4-hydroxylase (eu_PheOH), tyrosine hydroxylase (TyrOH) and tryptophan hydroxylase (TrpOH)

 Score = 97.3 bits (243), Expect = 3e-26
 Identities = 34/71 (47%), Positives = 43/71 (60%), Gaps = 1/71 (1%)

Query: 8   YWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDK-PQRKPFEPSVTALQTYPITEYQ 66
           YW+TVEFGL ++ G L+ +GAG+LSS GE  Y L    P R PF+        Y I  +Q
Sbjct: 154 YWYTVEFGLIQEPGGLRIYGAGILSSPGETLYALESPDPNRIPFDLERVMRTPYRIDSFQ 213

Query: 67  PLYFVAESFED 77
           P YFV +SFE 
Sbjct: 214 PTYFVIDSFEQ 224

PheOH catalyzes the hydroxylation of L-Phe to L-tyrosine (L-Tyr). It uses (6R)-L-erythro-5,6,7,8-tetrahydrobiopterin (BH4) as the physiological electron donor. Length = 228

>gnl|CDD|225727 COG3186, COG3186, Phenylalanine-4-hydroxylase [Amino acid transport and metabolism]

 Score = 82.9 bits (205), Expect = 3e-20
 Identities = 37/72 (51%), Positives = 45/72 (62%), Gaps = 3/72 (4%)

Query: 7   CYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCL-SDKPQRKPFEPSVTALQT-YPITE 64
            YW+TVEFGL    G LK +GAG+LSS  EL Y L SD P R PF+     ++T Y I  
Sbjct: 184 LYWYTVEFGLVETPGGLKIYGAGILSSPTELVYALESDSPNRIPFDLE-QVMRTPYRIDT 242

Query: 65  YQPLYFVAESFE 76
           +QP YFV  SF+
Sbjct: 243 FQPTYFVIPSFD 254

Length = 291

>gnl|CDD|130334 TIGR01267, Phe4hydrox_mono, phenylalanine-4-hydroxylase, monomeric form

 Score = 80.7 bits (199), Expect = 1e-19
 Identities = 33/75 (44%), Positives = 46/75 (61%), Gaps = 3/75 (4%)

Query: 8   YWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCL-SDKPQRKPFEPSVTALQT-YPITEY 65
           YW+T+EFGL   +   + +GAG+LSS  E  Y L SD+P    F+  + A++T Y I  +
Sbjct: 154 YWYTIEFGLVETDQGKRIYGAGILSSPKETVYSLESDEPLHVAFDL-LEAMRTPYRIDIF 212

Query: 66  QPLYFVAESFEDAKD 80
           QPLYFV  SF+   D
Sbjct: 213 QPLYFVLPSFKRLFD 227

This model describes the smaller, monomeric form of phenylalanine-4-hydroxylase, as found in a small number of Gram-negative bacteria. The enzyme irreversibly converts phenylalanine to tryosine and is known to be the rate-limiting step in phenylalanine catabolism in some systems. This family is of biopterin and metal-dependent hydroxylases is related to a family of longer, multimeric aromatic amino acid hydroxylases that have additional N-terminal regulatory sequences. These include tyrosine 3-monooxygenase, phenylalanine-4-hydroxylase, and tryptophan 5-monoxygenase [Energy metabolism, Amino acids and amines]. Length = 248

>gnl|CDD|237598 PRK14056, PRK14056, phenylalanine 4-monooxygenase; Provisional

 Score = 76.6 bits (189), Expect = 2e-17
 Identities = 33/72 (45%), Positives = 43/72 (59%), Gaps = 6/72 (8%)

Query: 8   YWFTVEFGLCRQEGQL---KAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITE 64
           +W+TVE+GL    G L   K +GAGLLSS GE ++CL+D  ++ PF        TY IT+
Sbjct: 207 FWWTVEYGLI---GTLDNPKIYGAGLLSSVGESKHCLTDAVEKVPFSIEACTSTTYDITK 263

Query: 65  YQPLYFVAESFE 76
            QP  FV   FE
Sbjct: 264 MQPQLFVCPDFE 275

Length = 578

>gnl|CDD|172547 PRK14055, PRK14055, aromatic amino acid hydroxylase; Provisional

 Score = 37.7 bits (87), Expect = 6e-04
 Identities = 20/45 (44%), Positives = 25/45 (55%)

Query: 7   CYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFE 51
           C+WFTVE GL       KA+GA L+SS  EL +   D  +  P E
Sbjct: 255 CFWFTVESGLIENHEGRKAYGAVLISSPQELGHAFIDNVRVLPLE 299

Length = 362

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	125
KOG3820|consensus	461		100.0
PF00351	332	Biopterin_H: Biopterin-dependent aromatic amino ac	100.0
TIGR01269	457	Tyr_3_monoox tyrosine 3-monooxygenase, tetrameric.	100.0
TIGR01268	436	Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetra	100.0
TIGR01270	464	Trp_5_monoox tryptophan 5-monooxygenase, tetrameri	100.0
cd03347	306	eu_PheOH Eukaryotic phenylalanine-4-hydroxylase (e	100.0
cd03345	298	eu_TyrOH Eukaryotic tyrosine hydroxylase (TyrOH);	100.0
cd03346	287	eu_TrpOH Eukaryotic tryptophan hydroxylase (TrpOH)	100.0
cd00361	221	arom_aa_hydroxylase Biopterin-dependent aromatic a	100.0
cd03348	228	pro_PheOH Prokaryotic phenylalanine-4-hydroxylase	100.0
TIGR01267	248	Phe4hydrox_mono phenylalanine-4-hydroxylase, monom	100.0
PRK11913	275	phhA phenylalanine 4-monooxygenase; Reviewed	100.0
PRK14055	362	aromatic amino acid hydroxylase; Provisional	100.0
PRK14056	578	phenylalanine 4-monooxygenase; Provisional	100.0
COG3186	291	Phenylalanine-4-hydroxylase [Amino acid transport	99.97

>KOG3820|consensus

Probab=100.00  E-value=2.3e-55  Score=375.54  Aligned_cols=125  Identities=63%  Similarity=1.067  Sum_probs=123.6

Q ss_pred             CccceeeeeEEEEEEEeeeCCceEEeecceecCHhhhhhhhCCCCccccCChhhhccccCCCCcccceeEEecChHHHhh
Q psy14594          1 MVEWSLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQPLYFVAESFEDAKD   80 (125)
Q Consensus         1 ~~~LarlyWfTVEFGL~~e~~~lkayGAGlLSS~gEl~~als~~~~~~pfdp~~~~~~~y~i~~~Qp~YFv~eSfe~l~~   80 (125)
                      |++|++|||||||||||+++|++||||||||||+|||+||+|++|++++|||+.++.|+|.||+|||.|||+|||+||++
T Consensus       324 IEKLaTlywFtVEFGLCkq~g~~KayGAGLLSS~gEL~hals~~pei~~FdP~vt~vq~y~it~yQp~YfvaeSFedAk~  403 (461)
T KOG3820|consen  324 IEKLATLYWFTVEFGLCKQDGELKAYGAGLLSSYGELQHALSDKPEIKDFDPEVTAVQKYLITTYQPLYFVAESFEDAKE  403 (461)
T ss_pred             HHHhheeeEEEEEEeeeccCCeeeeechhhhhhHHHHHHHhcCCccccCCCccceeeeeccccccccceeehhhHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccc---------eeeeecCccceEEeeCChhHHHHHHHHHHHHHHHHHHHhhcC
Q psy14594         81 KMM---------FGVRYNPYTQSVDVIDSKVQLSELVQNINGEMQILLTSLKKI  125 (125)
Q Consensus        81 ~lr---------F~~~Yd~~t~si~~~~~~~~~~~~~~~~~~~l~~l~~al~k~  125 (125)
                      |||         |+|||||||+||||||+.++|++++++|++||+.|++||+||
T Consensus       404 KlR~fa~ti~RPF~VrynpyT~svEvLds~~~l~~~~~~l~~dl~~l~~Al~ki  457 (461)
T KOG3820|consen  404 KLRKFASTIKRPFSVRYNPYTQSVEVLDSSAKLERLVSSLRSDLSILTHALSKI  457 (461)
T ss_pred             HHHHHHHhCCCCceeeeccccceehhhcCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999         999999999999999999999999999999999999999986

>PF00351 Biopterin_H: Biopterin-dependent aromatic amino acid hydroxylase; InterPro: IPR019774 Phenylalanine, tyrosine and tryptophan hydroxylases constitute a family of tetrahydrobiopterin-dependent aromatic amino acid hydroxylases, all of which are rate-limiting catalysts for important metabolic pathways []

Probab=100.00  E-value=6.2e-55  Score=365.20  Aligned_cols=124  Identities=57%  Similarity=1.022  Sum_probs=111.0

Q ss_pred             CccceeeeeEEEEEEEeeeCCceEEeecceecCHhhhhhhhCCCCccccCChhhhccccCCCCcccceeEEecChHHHhh
Q psy14594          1 MVEWSLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQPLYFVAESFEDAKD   80 (125)
Q Consensus         1 ~~~LarlyWfTVEFGL~~e~~~lkayGAGlLSS~gEl~~als~~~~~~pfdp~~~~~~~y~i~~~Qp~YFv~eSfe~l~~   80 (125)
                      +++|+||||||||||||+|+|++||||||||||+||++||+|++|+++||||+++++|+|+|++|||+|||++||+||++
T Consensus       200 i~~LarlyWfTVEFGL~~e~g~lkaYGAGlLSS~gEl~~als~~~~~~pfdp~~~~~~~y~i~~~Qp~YFv~eSfe~~~~  279 (332)
T PF00351_consen  200 IEKLARLYWFTVEFGLCRENGELKAYGAGLLSSYGELEHALSDKPEIRPFDPERVARTPYDITTYQPVYFVIESFEDAKE  279 (332)
T ss_dssp             HHHHHHHHHTTTTT-EEEETTEEEE--HHHHT-HHHHHHHTSSSSEEEE--HHHHCTS---SSSS-SEEEEESSHHHHHH
T ss_pred             HHHHHhheeeeeEEEEEecCCceEEecccccccccccccccCCCCeeeccCHHHHhCCCCCCCcccceEEEECCHHHHHH
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccc---------eeeeecCccceEEeeCChhHHHHHHHHHHHHHHHHHHHhhc
Q psy14594         81 KMM---------FGVRYNPYTQSVDVIDSKVQLSELVQNINGEMQILLTSLKK  124 (125)
Q Consensus        81 ~lr---------F~~~Yd~~t~si~~~~~~~~~~~~~~~~~~~l~~l~~al~k  124 (125)
                      +||         |+++|||+|+||+|+|+++++++++++||+||++|++||+|
T Consensus       280 klr~fa~~i~rpf~~~ydp~t~svevl~~~~~~~~~~~~~~~~l~~l~~al~k  332 (332)
T PF00351_consen  280 KLREFAATIKRPFSVRYDPYTQSVEVLDSPQKIKNLVNDLKEELSILSNALSK  332 (332)
T ss_dssp             HHHHHHHTS--SSEEEEETTTTEEEEE-SHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhCCCCCccccCCCcceEEecCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999         99999999999999999999999999999999999999987

The proteins are structurally and functionally related, each containing iron, and catalysing ring hydroxylation of aromatic amino acids, using tetra-hydrobiopterin (BH4) as a substrate. All are regulated by phosphorylation at serines in their N-termini. It has been suggested that the proteins each contain a conserved C-terminal catalytic (C) domain and an unrelated N-terminal regulatory (R) domain. It is possible that the R domains arose from genes that were recruited from different sources to combine with the common gene for the catalytic core. Thus, by combining with the same C domain, the proteins acquired the unique regulatory properties of the separate R domains. A variety of enzymes belong to this family that includes, phenylalanine-4-hydroxylase from Chromobacterium violaceum where it is copper-dependent; it is iron-dependent in Pseudomonas aeruginosa, phenylalanine-4-hydroxylase catalyzes the conversion of phenylalanine to tyrosine. In humans, deficiencies are the cause of phenylketonuria, the most common inborn error of amino acid metabolism [], tryptophan 5-hydroxylase catalyzes the rate-limiting step in serotonin biosynthesis: the conversion of tryptophan to 3-hydroxy-anthranilate and tyrosine 3-hydroxylase catalyzes the rate limiting step in catecholamine biosynthesis: the conversion of tyrosine to 3,4-dihydroxy-L-phenylalanine.; GO: 0016714 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced pteridine as one donor, and incorporation of one atom of oxygen, 0055114 oxidation-reduction process; PDB: 1PHZ_A 2PHM_A 2V28_A 2V27_A 1PAH_A 1DMW_A 1TG2_A 1KW0_A 1MMT_A 1TDW_A ....

>TIGR01269 Tyr_3_monoox tyrosine 3-monooxygenase, tetrameric

Probab=100.00  E-value=8.9e-54  Score=369.09  Aligned_cols=125  Identities=47%  Similarity=0.858  Sum_probs=122.9

Q ss_pred             CccceeeeeEEEEEEEeeeCCceEEeecceecCHhhhhhhhCCCCccccCChhhhccccCCCCcccceeEEecChHHHhh
Q psy14594          1 MVEWSLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQPLYFVAESFEDAKD   80 (125)
Q Consensus         1 ~~~LarlyWfTVEFGL~~e~~~lkayGAGlLSS~gEl~~als~~~~~~pfdp~~~~~~~y~i~~~Qp~YFv~eSfe~l~~   80 (125)
                      +++|+||||||||||||+++|++||||||||||+||+.||+|++|+++||||+.+++|+|+|++|||+|||++||++|++
T Consensus       323 i~~LarlYWfTVEFGLi~e~g~lKaYGAGLLSS~GEl~~als~~p~~~pfdp~~~~~t~Y~I~~~Qp~YFV~eSfe~l~~  402 (457)
T TIGR01269       323 IEKLSTLYWFTVEFGLCKENGETKAYGAGLLSSYGELEHAFSDLSEKRPFNPNDAAVQPYQDQGYQKIYFVTESFEDAKR  402 (457)
T ss_pred             HHHHhHhHhhhhhcccccCCCceeEeeceeecCHHHHHHHcCCCCccCCCCHHHHhcCCCCCCCcCCceEEeCCHHHHHH
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccc---------eeeeecCccceEEeeCChhHHHHHHHHHHHHHHHHHHHhhcC
Q psy14594         81 KMM---------FGVRYNPYTQSVDVIDSKVQLSELVQNINGEMQILLTSLKKI  125 (125)
Q Consensus        81 ~lr---------F~~~Yd~~t~si~~~~~~~~~~~~~~~~~~~l~~l~~al~k~  125 (125)
                      +||         |.++|||||+||+|+|+++++++++++||+||+.|++||+||
T Consensus       403 ~l~~f~~~~~rPf~v~y~pyt~svevl~~~~~~~~~~~~~~~e~~~l~~al~k~  456 (457)
T TIGR01269       403 KLRNYINTSGRPFIVRFDPITETVEVLDRFSKRKELLKHVKEEIGQLTTALNHL  456 (457)
T ss_pred             HHHHHHHhCCCCcceeecCccceEEEeCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999         999999999999999999999999999999999999999986

This model describes tyrosine 3-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tryptophan 5-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.

>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form

Probab=100.00  E-value=2.8e-53  Score=365.37  Aligned_cols=125  Identities=60%  Similarity=1.086  Sum_probs=122.7

Q ss_pred             CccceeeeeEEEEEEEeeeCCceEEeecceecCHhhhhhhhCCCCccccCChhhhccccCCCCcccceeEEecChHHHhh
Q psy14594          1 MVEWSLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQPLYFVAESFEDAKD   80 (125)
Q Consensus         1 ~~~LarlyWfTVEFGL~~e~~~lkayGAGlLSS~gEl~~als~~~~~~pfdp~~~~~~~y~i~~~Qp~YFv~eSfe~l~~   80 (125)
                      +++|+||||||||||||+++|++||||||||||+||++||||++|+++||||+++++|+|+|++|||+|||++||++|++
T Consensus       302 i~~LarlyWfTVEFGL~~~~~~~k~YGAGlLSS~gE~~~~ls~~~~~~~fd~~~~~~~~y~i~~~Q~~YFv~~sf~~l~~  381 (436)
T TIGR01268       302 IEKLATLYWFTIEFGLCKQDGEKKAYGAGLLSSFGELQYCLSDKPEVVDFDPEVTCVTKYPITEFQPLYFLAESFEDAKE  381 (436)
T ss_pred             HHHHhhhheeeeccceecCCCceeEeccchhcCHHHHHHhcCCCCccCCCCHHHHhcCCCCCCCcCCceEEeCCHHHHHH
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccc---------eeeeecCccceEEeeCChhHHHHHHHHHHHHHHHHHHHhhcC
Q psy14594         81 KMM---------FGVRYNPYTQSVDVIDSKVQLSELVQNINGEMQILLTSLKKI  125 (125)
Q Consensus        81 ~lr---------F~~~Yd~~t~si~~~~~~~~~~~~~~~~~~~l~~l~~al~k~  125 (125)
                      +|+         |.++|||||+||+|+|++++++++++.+|+|++.|++||+||
T Consensus       382 ~~~~~~~~~~~pf~~~y~~~t~~v~~~~~~~~~~~~~~~~~~~~~~~~~al~~~  435 (436)
T TIGR01268       382 KLKSFAATIPRPFSVRYNAYTQRVEILDKKAQLQRLADDIRSEISILQEALGKL  435 (436)
T ss_pred             HHHHHHHhCCCCccceecCccceEEecCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            997         999999999999999999999999999999999999999986

The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.

>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric

Probab=100.00  E-value=5.9e-53  Score=365.34  Aligned_cols=125  Identities=45%  Similarity=0.794  Sum_probs=122.6

Q ss_pred             CccceeeeeEEEEEEEeee-CCceEEeecceecCHhhhhhhhCCCCccccCChhhhccccCCCCcccceeEEecChHHHh
Q psy14594          1 MVEWSLCYWFTVEFGLCRQ-EGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQPLYFVAESFEDAK   79 (125)
Q Consensus         1 ~~~LarlyWfTVEFGL~~e-~~~lkayGAGlLSS~gEl~~als~~~~~~pfdp~~~~~~~y~i~~~Qp~YFv~eSfe~l~   79 (125)
                      +++|+||||||||||||++ +|++||||||||||+||+.|||+++|+++||||+.+++|+|+|++|||+|||++||++|+
T Consensus       329 i~~LarlyWfTVEFGLi~e~~g~lkaYGAGlLSS~gEl~~~ls~~~~~~pfd~~~~~~~~Y~i~~~Qp~YFv~~Sfe~l~  408 (464)
T TIGR01270       329 IKKLATLYFFTIEFGLCKQDDEQFKVYGAGLLSSVAELQHALSGSAKIKPFDPDRVCEQECLITTFQNAYFYTRSFEEAK  408 (464)
T ss_pred             HHHHhHhhhhhhhccceecCCCCeEEeeceeeCCHHHHHHHccCCCccCCCCHHHHhcCCCCCCCcccceEEeCCHHHHH
Confidence            4679999999999999999 999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccc---------eeeeecCccceEEeeCChhHHHHHHHHHHHHHHHHHHHhhcC
Q psy14594         80 DKMM---------FGVRYNPYTQSVDVIDSKVQLSELVQNINGEMQILLTSLKKI  125 (125)
Q Consensus        80 ~~lr---------F~~~Yd~~t~si~~~~~~~~~~~~~~~~~~~l~~l~~al~k~  125 (125)
                      ++|+         |.++|||||+||+|+|+++++++++++||+||+.|++||+||
T Consensus       409 ~~l~~f~~~~~rpf~~~y~p~t~~v~vl~~~~~~~~~~~~~~~~~~~l~~al~~~  463 (464)
T TIGR01270       409 EKMREFTNTIKRPFGVRYNPYTESVEVLKNSKSITLAVNELRSDLNLVAGALHKI  463 (464)
T ss_pred             HHHHHHHHhcCCCccceEcCccceEEeeCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9997         999999999999999999999999999999999999999986

This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.

>cd03347 eu_PheOH Eukaryotic phenylalanine-4-hydroxylase (eu_PheOH); a member of the biopterin-dependent aromatic amino acid hydroxylase family of non-heme, iron(II)-dependent enzymes that also includes prokaryotic phenylalanine-4-hydroxylase (pro_PheOH), eukaryotic tyrosine hydroxylase (TyrOH) and eukaryotic tryptophan hydroxylase (TrpOH)

Probab=100.00  E-value=2.2e-47  Score=316.94  Aligned_cols=98  Identities=69%  Similarity=1.262  Sum_probs=95.8

Q ss_pred             CccceeeeeEEEEEEEeeeCCceEEeecceecCHhhhhhhhCCCCccccCChhhhccccCCCCcccceeEEecChHHHhh
Q psy14594          1 MVEWSLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQPLYFVAESFEDAKD   80 (125)
Q Consensus         1 ~~~LarlyWfTVEFGL~~e~~~lkayGAGlLSS~gEl~~als~~~~~~pfdp~~~~~~~y~i~~~Qp~YFv~eSfe~l~~   80 (125)
                      +++|+||||||||||||+++|++||||||||||+||++||||++|+++||||+++++|+|+|++|||+|||++||+||++
T Consensus       200 i~~LarlYWfTVEFGLi~e~g~lkaYGAGlLSS~GE~~~als~~p~~~pfd~~~~~~t~Y~I~~~Qp~YFv~~Sfe~l~~  279 (306)
T cd03347         200 IEKLATVYWFTVEFGLCKQGGSIKAYGAGLLSSFGELQYCLSDKPELLPFEPEKTAVTKYPITEFQPLYYVAESFEDAKE  279 (306)
T ss_pred             HHHHhhheeeeeccccccCCCceeEeecchhcCHHHHHHHcCCCCccCCCCHHHHhCCCCCCCCcCCceEEeCCHHHHHH
Confidence            36799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccc---------eeeeecCccceEEee
Q psy14594         81 KMM---------FGVRYNPYTQSVDVI   98 (125)
Q Consensus        81 ~lr---------F~~~Yd~~t~si~~~   98 (125)
                      +||         |.++|||||+||+|+
T Consensus       280 ~l~~f~~~~~rpf~~~y~~~t~~v~~~  306 (306)
T cd03347         280 KLRNFAATIPRPFSVRYNPYTQRIEVL  306 (306)
T ss_pred             HHHHHHHhCCCCccceecCccceEeeC
Confidence            999         999999999999986

PheOH catalyzes the first and rate-limiting step in the metabolism of the amino acid L-phenylalanine (L-Phe), the hydroxylation of L-Phe to L-tyrosine (L-Tyr). It uses (6R)-L-erythro-5,6,7,8-tetrahydrobiopterin (BH4) as the physiological electron donor. The catalytic activity of the tetrameric enzyme is tightly regulated by the binding of L-Phe and BH4 as well as by phosphorylation. Mutations in the human enzyme are linked to a severe variant of phenylketonuria.

>cd03345 eu_TyrOH Eukaryotic tyrosine hydroxylase (TyrOH); a member of the biopterin-dependent aromatic amino acid hydroxylase family of non-heme, iron(II)-dependent enzymes that also includes prokaryotic and eukaryotic phenylalanine-4-hydroxylase (PheOH) and eukaryotic tryptophan hydroxylase (TrpOH)

Probab=100.00  E-value=5.9e-44  Score=295.66  Aligned_cols=91  Identities=62%  Similarity=1.163  Sum_probs=89.0

Q ss_pred             CccceeeeeEEEEEEEeeeCCceEEeecceecCHhhhhhhhCCCCccccCChhhhccccCCCCcccceeEEecChHHHhh
Q psy14594          1 MVEWSLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQPLYFVAESFEDAKD   80 (125)
Q Consensus         1 ~~~LarlyWfTVEFGL~~e~~~lkayGAGlLSS~gEl~~als~~~~~~pfdp~~~~~~~y~i~~~Qp~YFv~eSfe~l~~   80 (125)
                      +++|+||||||||||||+++|++||||||||||+||++||+|++|+++||||+.+++|+|+|++|||+|||++||++|++
T Consensus       199 i~~LarlYWfTVEFGLi~e~g~lkaYGAGlLSS~gEl~~als~~p~~~pfd~~~~~~t~Y~i~~~Qp~YFv~~Sfe~l~~  278 (298)
T cd03345         199 IEKLSTLYWFTVEFGLCKENGELKAYGAGLLSSYGELLHALSDEPEHRPFDPAATAVQPYQDQTYQPIYFVSESFSDAKD  278 (298)
T ss_pred             HHHHhHhhhhhhhcccccCCCceeEeechhhcCHHHHHHHCCCCCccCCCCHHHHhcCCCCCCCcCCceEEeCCHHHHHH
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccc---------eeeeecCc
Q psy14594         81 KMM---------FGVRYNPY   91 (125)
Q Consensus        81 ~lr---------F~~~Yd~~   91 (125)
                      +||         |.++||||
T Consensus       279 ~l~~f~~~~~rpf~~~y~~~  298 (298)
T cd03345         279 KLRNYASTMKRPFSVRYDPY  298 (298)
T ss_pred             HHHHHHHhcCCCCcccCCCC
Confidence            999         99999997

TyrOH catalyzes the conversion of tyrosine to L-dihydroxyphenylalanine (L-DOPA), the rate-limiting step in the biosynthesis of the catecholamines dopamine, noradrenaline, and adrenaline.

>cd03346 eu_TrpOH Eukaryotic tryptophan hydroxylase (TrpOH); a member of the biopterin-dependent aromatic amino acid hydroxylase family of non-heme, iron(II)-dependent enzymes that also includes prokaryotic and eukaryotic phenylalanine-4-hydroxylase (PheOH) and eukaryotic tyrosine hydroxylase (TyrOH)

Probab=100.00  E-value=1.5e-40  Score=274.38  Aligned_cols=85  Identities=58%  Similarity=0.998  Sum_probs=82.1

Q ss_pred             CccceeeeeEEEEEEEeeeCCceEEeecceecCHhhhhhhhCCCCccccCChhhhccccCCCCcccceeEEecChHHHhh
Q psy14594          1 MVEWSLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQPLYFVAESFEDAKD   80 (125)
Q Consensus         1 ~~~LarlyWfTVEFGL~~e~~~lkayGAGlLSS~gEl~~als~~~~~~pfdp~~~~~~~y~i~~~Qp~YFv~eSfe~l~~   80 (125)
                      +++|+||||||||||||+++|++||||||||||+||++||++++|+++||||+.+++|+|+|++|||+|||++||++|++
T Consensus       200 i~~LarlYWfTVEFGLi~e~~~lkaYGAGiLSS~gE~~~als~~~~~~pfd~~~~~~t~Y~i~~~Qp~YFv~~Sfe~l~~  279 (287)
T cd03346         200 IQKLATCYFFTVEFGLCKQDGQLKVYGAGLLSSIGELKHALSGEAKVKPFDPKVTCKQECLITTFQEAYFVSESFEEAKE  279 (287)
T ss_pred             HHHHhHhhhhhcccccccCCCceeEeccchhcCHHHHHHHccCCCccCCCCHHHHhCCCCCCCCcCCceEEeCCHHHHHH
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccc-ee
Q psy14594         81 KMM-FG   85 (125)
Q Consensus        81 ~lr-F~   85 (125)
                      +|| |.
T Consensus       280 ~l~~f~  285 (287)
T cd03346         280 KMREFA  285 (287)
T ss_pred             HHHHHh
Confidence            998 53

TrpOH oxidizes L-tryptophan to 5-hydroxy-L-tryptophan, the rate-limiting step in the biosynthesis of serotonin (5-hydroxytryptamine), a widely distributed hormone and neurotransmitter.

>cd00361 arom_aa_hydroxylase Biopterin-dependent aromatic amino acid hydroxylase; a family of non-heme, iron(II)-dependent enzymes that includes prokaryotic and eukaryotic phenylalanine-4-hydroxylase (PheOH), eukaryotic tyrosine hydroxylase (TyrOH) and eukaryotic tryptophan hydroxylase (TrpOH)

Probab=100.00  E-value=5.5e-40  Score=262.82  Aligned_cols=80  Identities=60%  Similarity=1.037  Sum_probs=77.8

Q ss_pred             ccceeeeeEEEEEEEeeeCCceEEeecceecCHhhhhhhhCCCCccccCChhhhccccCCCCcccceeEEecChHHHhhc
Q psy14594          2 VEWSLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQPLYFVAESFEDAKDK   81 (125)
Q Consensus         2 ~~LarlyWfTVEFGL~~e~~~lkayGAGlLSS~gEl~~als~~~~~~pfdp~~~~~~~y~i~~~Qp~YFv~eSfe~l~~~   81 (125)
                      .+|+||||||||||||+++|++||||||||||+||++||++++|+++||||+++++|+|+|++|||+|||++||++|+++
T Consensus       142 ~~LarlyWfTVEFGLi~e~~~lk~YGAGiLSS~gE~~~~l~~~~~~~~fd~~~v~~t~Y~i~~~Qp~yFvi~sf~~l~~~  221 (221)
T cd00361         142 EKLARLYWFTVEFGLIKEDGELKAYGAGLLSSYGELQHALSDKPKRIPFDPERVARTPYDITSFQPTYFVIESFEQLKEK  221 (221)
T ss_pred             HHHHHhhhhhcccccccCCCceeEeechhhcCHHHHHHHccCCCccCCCCHHHHhCCCCCCCCcCCceEEeCCHHHHhhC
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999874

PheOH converts L-phenylalanine to L-tyrosine, an important step in phenylalanine catabolism and neurotransmitter biosynthesis, and is linked to a severe variant of phenylketonuria in humans. TyrOH and TrpOH are involved in the biosynthesis of catecholamine and serotonin, respectively. The eukaryotic enzymes are all homotetramers.

>cd03348 pro_PheOH Prokaryotic phenylalanine-4-hydroxylase (pro_PheOH); a member of the biopterin-dependent aromatic amino acid hydroxylase family of non-heme, iron(II)-dependent enzymes that also includes the eukaryotic proteins, phenylalanine-4-hydroxylase (eu_PheOH), tyrosine hydroxylase (TyrOH) and tryptophan hydroxylase (TrpOH)

Probab=100.00  E-value=1.9e-39  Score=260.81  Aligned_cols=79  Identities=44%  Similarity=0.809  Sum_probs=76.9

Q ss_pred             ccceeeeeEEEEEEEeeeCCceEEeecceecCHhhhhhhhCC-CCccccCChhhhccccCCCCcccceeEEecChHHHhh
Q psy14594          2 VEWSLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSD-KPQRKPFEPSVTALQTYPITEYQPLYFVAESFEDAKD   80 (125)
Q Consensus         2 ~~LarlyWfTVEFGL~~e~~~lkayGAGlLSS~gEl~~als~-~~~~~pfdp~~~~~~~y~i~~~Qp~YFv~eSfe~l~~   80 (125)
                      ++|+||||||||||||+++|++||||||||||+||+.||+++ +|+++||||+++++|+|+|++|||+|||++||++|.+
T Consensus       148 ~~LarlyWfTVEFGLi~e~~~lk~YGAGiLSS~gE~~~al~~~~~~~~~fd~~~v~~t~Y~i~~~Qp~YFv~~sf~~L~~  227 (228)
T cd03348         148 ALLARLYWYTVEFGLIQEPGGLRIYGAGILSSPGETLYALESPDPNRIPFDLERVMRTPYRIDSFQPTYFVIDSFEQLYD  227 (228)
T ss_pred             HHHhHhhhhhccccccccCCceeEeccchhcCHHHHHHHcCCCCCcccCCCHHHHhCCCCCCCCcCCceEEeCCHHHHhh
Confidence            579999999999999999999999999999999999999988 8999999999999999999999999999999999976

PheOH catalyzes the hydroxylation of L-Phe to L-tyrosine (L-Tyr). It uses (6R)-L-erythro-5,6,7,8-tetrahydrobiopterin (BH4) as the physiological electron donor.

>TIGR01267 Phe4hydrox_mono phenylalanine-4-hydroxylase, monomeric form

Probab=100.00  E-value=4.7e-39  Score=261.08  Aligned_cols=82  Identities=38%  Similarity=0.627  Sum_probs=78.8

Q ss_pred             ccceeeeeEEEEEEEeeeCCceEEeecceecCHhhhhhhh-CCCCccccCChhhhccccCCCCcccceeEEecChHHHhh
Q psy14594          2 VEWSLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCL-SDKPQRKPFEPSVTALQTYPITEYQPLYFVAESFEDAKD   80 (125)
Q Consensus         2 ~~LarlyWfTVEFGL~~e~~~lkayGAGlLSS~gEl~~al-s~~~~~~pfdp~~~~~~~y~i~~~Qp~YFv~eSfe~l~~   80 (125)
                      ++|+||||||||||||+++|++||||||||||+||++||+ |++|+++||||+++++|+|+|++|||+|||++||++|.+
T Consensus       148 ~~LarlyWfTVEFGLi~e~~~lr~YGAGiLSS~gE~~~al~s~~p~~~pfd~~~v~~t~Y~i~~~Qp~YFvi~sf~~L~~  227 (248)
T TIGR01267       148 EMLARLYWYTIEFGLVETDQGKRIYGAGILSSPKETVYSLESDEPLHVAFDLLEAMRTPYRIDIFQPLYFVLPSFKRLFD  227 (248)
T ss_pred             HHHhhhheeeeeccccccCCceeEecchhhcCHHHHHHHhcCCCCcccCCCHHHHhCCCCCCCCcCCceEEeCCHHHHHH
Confidence            5799999999999999999999999999999999999999 789999999999999999999999999999999999988


Q ss_pred             ccc
Q psy14594         81 KMM   83 (125)
Q Consensus        81 ~lr   83 (125)
                      .+.
T Consensus       228 ~~~  230 (248)
T TIGR01267       228 AAQ  230 (248)
T ss_pred             HHH
Confidence            653

This family is of biopterin and metal-dependent hydroxylases is related to a family of longer, multimeric aromatic amino acid hydroxylases that have additional N-terminal regulatory sequences. These include tyrosine 3-monooxygenase, phenylalanine-4-hydroxylase, and tryptophan 5-monoxygenase.

>PRK11913 phhA phenylalanine 4-monooxygenase; Reviewed

Probab=100.00  E-value=1.3e-38  Score=261.58  Aligned_cols=81  Identities=48%  Similarity=0.806  Sum_probs=79.0

Q ss_pred             cceeeeeEEEEEEEeeeCCceEEeecceecCHhhhhhhh-CCCCccccCChhhhccccCCCCcccceeEEecChHHHhhc
Q psy14594          3 EWSLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCL-SDKPQRKPFEPSVTALQTYPITEYQPLYFVAESFEDAKDK   81 (125)
Q Consensus         3 ~LarlyWfTVEFGL~~e~~~lkayGAGlLSS~gEl~~al-s~~~~~~pfdp~~~~~~~y~i~~~Qp~YFv~eSfe~l~~~   81 (125)
                      +|+||||||||||||+++|++||||||||||+||+.||+ +++|+++||||+.+++|+|+|++|||+|||++||++|.+.
T Consensus       165 ~LarlyWfTVEFGLi~e~~~lk~YGAGiLSS~gE~~~al~s~~p~~~pfd~~~v~~t~Y~i~~~Qp~YFvi~sf~~L~~~  244 (275)
T PRK11913        165 FLARLYWFTVEFGLIRTPGGLRIYGAGILSSPGETLYALESDSPNRRPFDLERVMRTPYRIDIFQPTYFVIDSFEQLFDI  244 (275)
T ss_pred             HHhhheeeeecccccccCCceeEeechhhcCHHHHHHHhcCCCCeeecCCHHHHhCCCCCCCCcCCceEEeCCHHHHHHH
Confidence            799999999999999999999999999999999999999 8899999999999999999999999999999999999987


Q ss_pred             cc
Q psy14594         82 MM   83 (125)
Q Consensus        82 lr   83 (125)
                      +.
T Consensus       245 ~~  246 (275)
T PRK11913        245 AE  246 (275)
T ss_pred             HH
Confidence            65

>PRK14055 aromatic amino acid hydroxylase; Provisional

Probab=100.00  E-value=2.7e-37  Score=260.15  Aligned_cols=80  Identities=29%  Similarity=0.409  Sum_probs=77.3

Q ss_pred             cceeeeeEEEEEEEeeeCCceEEeecceecCHhhhhhhhCCCCccccCChhhhccccCCCCcccceeEEecChHHHhhcc
Q psy14594          3 EWSLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQPLYFVAESFEDAKDKM   82 (125)
Q Consensus         3 ~LarlyWfTVEFGL~~e~~~lkayGAGlLSS~gEl~~als~~~~~~pfdp~~~~~~~y~i~~~Qp~YFv~eSfe~l~~~l   82 (125)
                      .|+||||||||||||+++|++||||||||||+||+.||++++++++||||+++++|+|+||+|||+|||++||++|.+.+
T Consensus       251 ~LaRLYWFTVEFGLI~e~g~lKiYGAGILSS~GEl~~aL~~~~~r~pFD~~~v~rTpY~Id~~Qp~YFVieSfe~L~e~~  330 (362)
T PRK14055        251 AIVRCFWFTVESGLIENHEGRKAYGAVLISSPQELGHAFIDNVRVLPLELDQIIRLPFNTSTPQETLFSIRHFDELVELT  330 (362)
T ss_pred             HhhheeeeeeeeeeeccCCceeEecceeccChHHHHHHhcCCCCcCCCCHHHHhcCCCCCCCCCCceEEeCCHHHHHHHH
Confidence            58999999999999999999999999999999999999999988999999999999999999999999999999998754

>PRK14056 phenylalanine 4-monooxygenase; Provisional

Probab=100.00  E-value=1.4e-35  Score=261.47  Aligned_cols=82  Identities=39%  Similarity=0.669  Sum_probs=80.3

Q ss_pred             ccceeeeeEEEEEEEeeeCCceEEeecceecCHhhhhhhhCCCCccccCChhhhccccCCCCcccceeEEecChHHHhhc
Q psy14594          2 VEWSLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQPLYFVAESFEDAKDK   81 (125)
Q Consensus         2 ~~LarlyWfTVEFGL~~e~~~lkayGAGlLSS~gEl~~als~~~~~~pfdp~~~~~~~y~i~~~Qp~YFv~eSfe~l~~~   81 (125)
                      ++|+||||||||||||+++|++||||||||||+||++||+++.|+++||||+.+++|+|+||+|||+|||++||++|.+.
T Consensus       201 ~~LaRLyWfTVEFGLI~e~~~lKiYGAGLLSS~GE~~~~lsd~~~k~pfd~~~v~~t~Y~It~~Qp~yFV~~sfe~L~~~  280 (578)
T PRK14056        201 EQISRLFWWTVEYGLIGTLDNPKIYGAGLLSSVGESKHCLTDAVEKVPFSIEACTSTTYDITKMQPQLFVCPDFEELSEV  280 (578)
T ss_pred             HHHhheeeeeeeeeeeccCCceeEecceeecCHHHHHHhccCCCccCCCCHHHHhCCCCCCCCcCCceEEeCCHHHHHHH
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cc
Q psy14594         82 MM   83 (125)
Q Consensus        82 lr   83 (125)
                      ++
T Consensus       281 l~  282 (578)
T PRK14056        281 LE  282 (578)
T ss_pred             HH
Confidence            88

>COG3186 Phenylalanine-4-hydroxylase [Amino acid transport and metabolism]

Probab=99.97  E-value=5.2e-33  Score=227.77  Aligned_cols=81  Identities=44%  Similarity=0.758  Sum_probs=77.7

Q ss_pred             cceeeeeEEEEEEEeeeCCceEEeecceecCHhhhhhhh-CCCCccccCChhhhccccCCCCcccceeEEecChHHHhhc
Q psy14594          3 EWSLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCL-SDKPQRKPFEPSVTALQTYPITEYQPLYFVAESFEDAKDK   81 (125)
Q Consensus         3 ~LarlyWfTVEFGL~~e~~~lkayGAGlLSS~gEl~~al-s~~~~~~pfdp~~~~~~~y~i~~~Qp~YFv~eSfe~l~~~   81 (125)
                      .|+|||||||||||+++++++|||||||+||++|+.||+ +++|++.|||++++|+++|+|+++||+|||++||++|.+.
T Consensus       180 ~laRlyW~TvEfGLv~~~~g~kiYGagi~SSp~E~~~A~~~~~p~~~pfdl~~vmRtpyrid~~Q~~yFvi~~f~~L~el  259 (291)
T COG3186         180 MLARLYWYTVEFGLVETPGGLKIYGAGILSSPTELVYALESDSPNRIPFDLEQVMRTPYRIDTFQPTYFVIPSFDQLFEL  259 (291)
T ss_pred             HHHHHHHhhhhhceeeccccceeecceeecCchhhhhhhcCCCcccCCcCHHHHhhcccccCcccceeEeccCHHHHHHH
Confidence            689999999999999999999999999999999999995 8999999999999999999999999999999999999886


Q ss_pred             cc
Q psy14594         82 MM   83 (125)
Q Consensus        82 lr   83 (125)
                      ..
T Consensus       260 tq  261 (291)
T COG3186         260 TQ  261 (291)
T ss_pred             HH
Confidence            43

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	125
2pah_A	335	Tetrameric Human Phenylalanine Hydroxylase Length =		5e-37
1phz_A	429	Structure Of Phosphorylated Phenylalanine Hydroxyla		7e-32
1toh_A	343	Tyrosine Hydroxylase Catalytic And Tetramerization		1e-31
2toh_A	343	Tyrosine Hydroxylase Catalytic And Tetramerization		1e-31
4anp_A	324	Crystal Structure Of Human Phenylalanine Hydroxylas		1e-31
1j8t_A	325	Catalytic Domain Of Human Phenylalanine Hydroxylase		2e-31
2xsn_A	343	Crystal Structure Of Human Tyrosine Hydroxylase Cat		7e-31
1pah_A	308	Human Phenylalanine Hydroxylase Dimer, Residues 117		1e-30
1tdw_A	308	Crystal Structure Of Double Truncated Human Phenyla		2e-30
1dmw_A	307	Crystal Structure Of Double Truncated Human Phenyla		2e-30
3e2t_A	314	The Catalytic Domain Of Chicken Tryptophan Hydroxyl		2e-27
1mlw_A	301	Crystal Structure Of Human Tryptophan Hydroxylase W		5e-24
3hf6_A	290	Crystal Structure Of Human Tryptophan Hydroxylase T		8e-23
1ltu_A	297	Crystal Structure Of Chromobacterium Violaceum, Apo		8e-09
3tk2_A	302	Crystallographic Structure Of Phenylalanine Hydroxy		8e-09
3tcy_A	302	Crystallographic Structure Of Phenylalanine Hydroxy		8e-09
2v27_A	275	Structure Of The Cold Active Phenylalanine Hydroxyl		4e-08
2v28_A	267	Apo Structure Of The Cold Active Phenylalanine Hydr		4e-08

>pdb|2PAH|A Chain A, Tetrameric Human Phenylalanine Hydroxylase Length = 335

Iteration: 1
 Score =  149 bits (375), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 73/127 (57%), Positives = 94/127 (74%), Gaps = 9/127 (7%)
Query: 8   YWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQP 67
           YWFTVEFGLC+Q   +KA+GAGLLSSFGELQYCLS+KP+  P E   TA+Q Y +TE+QP
Sbjct: 208 YWFTVEFGLCKQGDSIKAYGAGLLSSFGELQYCLSEKPKLLPLELEKTAIQNYTVTEFQP 267
Query: 68  LYFVAESFEDAKDKMM---------FGVRYNPYTQSVDVIDSKVQLSELVQNINGEMQIL 118
           LY+VAESF DAK+K+          F VRY+PYTQ ++V+D+  QL  L  +IN E+ IL
Sbjct: 268 LYYVAESFNDAKEKVRNFAATIPRPFSVRYDPYTQRIEVLDNTQQLKILADSINSEIGIL 327
Query: 119 LTSLKKI 125
            ++L+KI
Sbjct: 328 CSALQKI 334

>pdb|1PHZ|A Chain A, Structure Of Phosphorylated Phenylalanine Hydroxylase Length = 429

Iteration: 1
 Score =  132 bits (331), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 64/105 (60%), Positives = 78/105 (74%), Gaps = 9/105 (8%)
Query: 8   YWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQP 67
           YWFTVEFGLC++   +KA+GAGLLSSFGELQYCLSDKP+  P E   TA Q Y +TE+QP
Sbjct: 325 YWFTVEFGLCKEGDSIKAYGAGLLSSFGELQYCLSDKPKLLPLELEKTACQEYSVTEFQP 384
Query: 68  LYFVAESFEDAKDKMM---------FGVRYNPYTQSVDVIDSKVQ 103
           LY+VAESF DAK+K+          F VRY+PYTQ V+V+D+  Q
Sbjct: 385 LYYVAESFSDAKEKVRTFAATIPRPFSVRYDPYTQRVEVLDNTQQ 429

>pdb|1TOH|A Chain A, Tyrosine Hydroxylase Catalytic And Tetramerization Domains From Rat Length = 343

Iteration: 1
 Score =  130 bits (328), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 61/130 (46%), Positives = 87/130 (66%), Gaps = 9/130 (6%)
Query: 5   SLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITE 64
           S  YWFTVEFGLC+Q G+LKA+GAGLLSS+GEL + LS++P+ + F+P   A+Q Y    
Sbjct: 213 STVYWFTVEFGLCKQNGELKAYGAGLLSSYGELLHSLSEEPEVRAFDPDTAAVQPYQDQT 272
Query: 65  YQPLYFVAESFEDAKDKMM---------FGVRYNPYTQSVDVIDSKVQLSELVQNINGEM 115
           YQP+YFV+ESF DAKDK+          F V+++PYT ++DV+DS   +   ++ +  E+
Sbjct: 273 YQPVYFVSESFNDAKDKLRNYASRIQRPFSVKFDPYTLAIDVLDSPHTIQRSLEGVQDEL 332
Query: 116 QILLTSLKKI 125
             L  +L  I
Sbjct: 333 HTLAHALSAI 342

>pdb|2TOH|A Chain A, Tyrosine Hydroxylase Catalytic And Tetramerization Domains From Rat Length = 343

Iteration: 1
 Score =  130 bits (328), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 61/130 (46%), Positives = 87/130 (66%), Gaps = 9/130 (6%)
Query: 5   SLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITE 64
           S  YWFTVEFGLC+Q G+LKA+GAGLLSS+GEL + LS++P+ + F+P   A+Q Y    
Sbjct: 213 STVYWFTVEFGLCKQNGELKAYGAGLLSSYGELLHSLSEEPEVRAFDPDTAAVQPYQDQT 272
Query: 65  YQPLYFVAESFEDAKDKMM---------FGVRYNPYTQSVDVIDSKVQLSELVQNINGEM 115
           YQP+YFV+ESF DAKDK+          F V+++PYT ++DV+DS   +   ++ +  E+
Sbjct: 273 YQPVYFVSESFNDAKDKLRNYASRIQRPFSVKFDPYTLAIDVLDSPHTIQRSLEGVQDEL 332
Query: 116 QILLTSLKKI 125
             L  +L  I
Sbjct: 333 HTLAHALSAI 342

>pdb|4ANP|A Chain A, Crystal Structure Of Human Phenylalanine Hydroxylase In Complex With A Pharmacological Chaperone Length = 324

Iteration: 1
 Score =  130 bits (328), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 62/102 (60%), Positives = 78/102 (76%), Gaps = 9/102 (8%)
Query: 8   YWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQP 67
           YWFTVEFGLC+Q   +KA+GAGLLSSFGELQYCLS+KP+  P E   TA+Q Y +TE+QP
Sbjct: 222 YWFTVEFGLCKQGDSIKAYGAGLLSSFGELQYCLSEKPKLLPLELEKTAIQNYTVTEFQP 281
Query: 68  LYFVAESFEDAKDKMM---------FGVRYNPYTQSVDVIDS 100
           LY+VAESF DAK+K+          F VRY+PYTQ ++V+D+
Sbjct: 282 LYYVAESFNDAKEKVRNFAATIPRPFSVRYDPYTQRIEVLDN 323

>pdb|1J8T|A Chain A, Catalytic Domain Of Human Phenylalanine Hydroxylase Fe(Ii) Length = 325

Iteration: 1
 Score =  130 bits (328), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 62/102 (60%), Positives = 78/102 (76%), Gaps = 9/102 (8%)
Query: 8   YWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQP 67
           YWFTVEFGLC+Q   +KA+GAGLLSSFGELQYCLS+KP+  P E   TA+Q Y +TE+QP
Sbjct: 223 YWFTVEFGLCKQGDSIKAYGAGLLSSFGELQYCLSEKPKLLPLELEKTAIQNYTVTEFQP 282
Query: 68  LYFVAESFEDAKDKMM---------FGVRYNPYTQSVDVIDS 100
           LY+VAESF DAK+K+          F VRY+PYTQ ++V+D+
Sbjct: 283 LYYVAESFNDAKEKVRNFAATIPRPFSVRYDPYTQRIEVLDN 324

>pdb|2XSN|A Chain A, Crystal Structure Of Human Tyrosine Hydroxylase Catalytic Domain Length = 343

Iteration: 1
 Score =  128 bits (322), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 60/130 (46%), Positives = 87/130 (66%), Gaps = 9/130 (6%)
Query: 5   SLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITE 64
           S  YWFTVEFGLC+Q G++KA+GAGLLSS+GEL +CLS++P+ + F+P   A+Q Y    
Sbjct: 206 STLYWFTVEFGLCKQNGEVKAYGAGLLSSYGELLHCLSEEPEIRAFDPEAAAVQPYQDQT 265
Query: 65  YQPLYFVAESFEDAKDKMM---------FGVRYNPYTQSVDVIDSKVQLSELVQNINGEM 115
           YQ +YFV+ESF DAKDK+          F V+++PYT ++DV+DS   +   ++ +  E+
Sbjct: 266 YQSVYFVSESFSDAKDKLRSYASRIQRPFSVKFDPYTLAIDVLDSPQAVRRSLEGVQDEL 325
Query: 116 QILLTSLKKI 125
             L  +L  I
Sbjct: 326 DTLAHALSAI 335

>pdb|1PAH|A Chain A, Human Phenylalanine Hydroxylase Dimer, Residues 117-424 Length = 308

Iteration: 1
 Score =  127 bits (319), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 61/100 (61%), Positives = 76/100 (76%), Gaps = 9/100 (9%)
Query: 8   YWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQP 67
           YWFTVEFGLC+Q   +KA+GAGLLSSFGELQYCLS+KP+  P E   TA+Q Y +TE+QP
Sbjct: 209 YWFTVEFGLCKQGDSIKAYGAGLLSSFGELQYCLSEKPKLLPLELEKTAIQNYTVTEFQP 268
Query: 68  LYFVAESFEDAKDKMM---------FGVRYNPYTQSVDVI 98
           LY+VAESF DAK+K+          F VRY+PYTQ ++V+
Sbjct: 269 LYYVAESFNDAKEKVRNFAATIPRPFSVRYDPYTQRIEVL 308

>pdb|1TDW|A Chain A, Crystal Structure Of Double Truncated Human Phenylalanine Hydroxylase Bh4-Responsive Pku Mutant A313t. Length = 308

Iteration: 1
 Score =  127 bits (319), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 61/100 (61%), Positives = 76/100 (76%), Gaps = 9/100 (9%)
Query: 8   YWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQP 67
           YWFTVEFGLC+Q   +KA+GAGLLSSFGELQYCLS+KP+  P E   TA+Q Y +TE+QP
Sbjct: 209 YWFTVEFGLCKQGDSIKAYGAGLLSSFGELQYCLSEKPKLLPLELEKTAIQNYTVTEFQP 268
Query: 68  LYFVAESFEDAKDKMM---------FGVRYNPYTQSVDVI 98
           LY+VAESF DAK+K+          F VRY+PYTQ ++V+
Sbjct: 269 LYYVAESFNDAKEKVRNFAATIPRPFSVRYDPYTQRIEVL 308

>pdb|1DMW|A Chain A, Crystal Structure Of Double Truncated Human Phenylalanine Hydroxylase With Bound 7,8-Dihydro-L-Biopterin Length = 307

Iteration: 1
 Score =  127 bits (319), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 61/100 (61%), Positives = 76/100 (76%), Gaps = 9/100 (9%)
Query: 8   YWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQP 67
           YWFTVEFGLC+Q   +KA+GAGLLSSFGELQYCLS+KP+  P E   TA+Q Y +TE+QP
Sbjct: 208 YWFTVEFGLCKQGDSIKAYGAGLLSSFGELQYCLSEKPKLLPLELEKTAIQNYTVTEFQP 267
Query: 68  LYFVAESFEDAKDKMM---------FGVRYNPYTQSVDVI 98
           LY+VAESF DAK+K+          F VRY+PYTQ ++V+
Sbjct: 268 LYYVAESFNDAKEKVRNFAATIPRPFSVRYDPYTQRIEVL 307

>pdb|3E2T|A Chain A, The Catalytic Domain Of Chicken Tryptophan Hydroxylase 1 With Bound Tryptophan Length = 314

Iteration: 1
 Score =  117 bits (293), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 58/103 (56%), Positives = 75/103 (72%), Gaps = 9/103 (8%)
Query: 5   SLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITE 64
           + CY+FTVEFGLC+QEGQL+ +GAGLLSS  EL++ LS   + KPF+P VT  Q   IT 
Sbjct: 210 ATCYFFTVEFGLCKQEGQLRVYGAGLLSSISELKHSLSGSAKVKPFDPKVTCKQECLITT 269
Query: 65  YQPLYFVAESFEDAKDKMM---------FGVRYNPYTQSVDVI 98
           +Q +YFV+ESFE+AK+KM          FGV+YNPYTQSV ++
Sbjct: 270 FQEVYFVSESFEEAKEKMREFAKTIKRPFGVKYNPYTQSVQIL 312

>pdb|1MLW|A Chain A, Crystal Structure Of Human Tryptophan Hydroxylase With Bound 7,8-Dihydro-L-Biopterin Cofactor And Fe(Iii) Length = 301

Iteration: 1
 Score =  105 bits (263), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 52/94 (55%), Positives = 67/94 (71%), Gaps = 9/94 (9%)
Query: 5   SLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITE 64
           + CY+FTVEFGLC+Q+GQL+ FGAGLLSS  EL++ LS   + KPF+P +T  Q   IT 
Sbjct: 208 ATCYFFTVEFGLCKQDGQLRVFGAGLLSSISELKHALSGHAKVKPFDPKITCKQECLITT 267
Query: 65  YQPLYFVAESFEDAKDKMM---------FGVRYN 89
           +Q +YFV+ESFEDAK+KM          FGV+YN
Sbjct: 268 FQDVYFVSESFEDAKEKMREFTKTIKRPFGVKYN 301

>pdb|3HF6|A Chain A, Crystal Structure Of Human Tryptophan Hydroxylase Type 1 With Bound Lp-521834 And Fe Length = 290

Iteration: 1
 Score =  101 bits (252), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 47/78 (60%), Positives = 61/78 (78%)
Query: 5   SLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITE 64
           + CY+FTVEFGLC+Q+GQL+ FGAGLLSS  EL++ LS   + KPF+P +T  Q   IT 
Sbjct: 206 ATCYFFTVEFGLCKQDGQLRVFGAGLLSSISELKHALSGHAKVKPFDPKITCKQECLITT 265
Query: 65  YQPLYFVAESFEDAKDKM 82
           +Q +YFV+ESFEDAK+KM
Sbjct: 266 FQDVYFVSESFEDAKEKM 283

>pdb|1LTU|A Chain A, Crystal Structure Of Chromobacterium Violaceum, Apo (No Iron Bound) Structure Length = 297

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 8   YWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCL-SDKPQRKPFEPSVTALQTYPITEYQ 66
           YW+TVEFGL      ++ +GAG+LSS  E  YCL S  P R  F+        Y I  +Q
Sbjct: 179 YWYTVEFGLINTPAGMRIYGAGILSSKSESIYCLDSASPNRVGFDLMRIMNTRYRIDTFQ 238
Query: 67  PLYFVAESFE 76
             YFV +SF+
Sbjct: 239 KTYFVIDSFK 248

>pdb|3TK2|A Chain A, Crystallographic Structure Of Phenylalanine Hydroxylase From Chromobacterium Violaceum Cocrystallized With Phenylalanine In A Site Distal To The Active Site Length = 302

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 8   YWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCL-SDKPQRKPFEPSVTALQTYPITEYQ 66
           YW+TVEFGL      ++ +GAG+LSS  E  YCL S  P R  F+        Y I  +Q
Sbjct: 184 YWYTVEFGLINTPAGMRIYGAGILSSKSESIYCLDSASPNRVGFDLMRIMNTRYRIDTFQ 243
Query: 67  PLYFVAESFE 76
             YFV +SF+
Sbjct: 244 KTYFVIDSFK 253

>pdb|3TCY|A Chain A, Crystallographic Structure Of Phenylalanine Hydroxylase From Chromobacterium Violaceum (Cpah) Bound To Phenylalanine In A Site Distal To The Active Site Length = 302

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 8   YWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCL-SDKPQRKPFEPSVTALQTYPITEYQ 66
           YW+TVEFGL      ++ +GAG+LSS  E  YCL S  P R  F+        Y I  +Q
Sbjct: 184 YWYTVEFGLINTPAGMRIYGAGILSSKSESIYCLDSASPNRVGFDLMRIMNTRYRIDTFQ 243
Query: 67  PLYFVAESFE 76
             YFV +SF+
Sbjct: 244 KTYFVIDSFK 253

>pdb|2V27|A Chain A, Structure Of The Cold Active Phenylalanine Hydroxylase From Colwellia Psychrerythraea 34h Length = 275

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 8   YWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKP-QRKPFEPSVTALQTYPITEYQ 66
           YWFT+EFGL      L+ +G G+LSS GE  Y +++    RKPF+        Y I   Q
Sbjct: 162 YWFTIEFGLLDTPKGLRIYGGGVLSSPGETDYAMNNTDVDRKPFDILDVLRTPYRIDIMQ 221
Query: 67  PLYFVAESFEDAKDKMMFGV 86
           P+Y++     D  +   F V
Sbjct: 222 PIYYMLTKVSDLDEIRKFEV 241

>pdb|2V28|A Chain A, Apo Structure Of The Cold Active Phenylalanine Hydroxylase From Colwellia Psychrerythraea 34h Length = 267

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 8   YWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKP-QRKPFEPSVTALQTYPITEYQ 66
           YWFT+EFGL      L+ +G G+LSS GE  Y +++    RKPF+        Y I   Q
Sbjct: 162 YWFTIEFGLLDTPKGLRIYGGGVLSSPGETDYAMNNTDVDRKPFDILDVLRTPYRIDIMQ 221
Query: 67  PLYFVAESFEDAKDKMMFGV 86
           P+Y++     D  +   F V
Sbjct: 222 PIYYMLTKVSDLDEIRKFEV 241

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	125
1toh_A	343	Tyroh, tyrosine hydroxylase; neurotransmitter bios	6e-51
1phz_A	429	Protein (phenylalanine hydroxylase); aromatic amin	8e-44
1j8u_A	325	Phenylalanine-4-hydroxylase; ferrous iron, 2-His-1	4e-43
1mlw_A	301	Tryptophan 5-monooxygenase; aromatic amino acid hy	1e-35
1ltz_A	297	Phenylalanine-4-hydroxylase; oxidoreductase, dihyd	3e-34
2v27_A	275	Phenylalanine hydroxylase; cold adaptation, tetrah	2e-32
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05

>1toh_A Tyroh, tyrosine hydroxylase; neurotransmitter biosynthesis, non-heme iron, P substrate; 2.30A {Rattus norvegicus} SCOP: d.178.1.1 PDB: 2toh_A* 2xsn_A Length = 343

 Score =  163 bits (414), Expect = 6e-51
 Identities = 61/134 (45%), Positives = 89/134 (66%), Gaps = 9/134 (6%)

Query: 1   MVEWSLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTY 60
           + + S  YWFTVEFGLC+Q G+LKA+GAGLLSS+GEL + LS++P+ + F+P   A+Q Y
Sbjct: 209 IEKLSTVYWFTVEFGLCKQNGELKAYGAGLLSSYGELLHSLSEEPEVRAFDPDTAAVQPY 268

Query: 61  PITEYQPLYFVAESFEDAKDKM---------MFGVRYNPYTQSVDVIDSKVQLSELVQNI 111
               YQP+YFV+ESF DAKDK+          F V+++PYT ++DV+DS   +   ++ +
Sbjct: 269 QDQTYQPVYFVSESFNDAKDKLRNYASRIQRPFSVKFDPYTLAIDVLDSPHTIQRSLEGV 328

Query: 112 NGEMQILLTSLKKI 125
             E+  L  +L  I
Sbjct: 329 QDELHTLAHALSAI 342

>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A Length = 429

 Score =  147 bits (371), Expect = 8e-44
 Identities = 64/112 (57%), Positives = 81/112 (72%), Gaps = 9/112 (8%)

Query: 1   MVEWSLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTY 60
           + + +  YWFTVEFGLC++   +KA+GAGLLSSFGELQYCLSDKP+  P E   TA Q Y
Sbjct: 318 IEKLATIYWFTVEFGLCKEGDSIKAYGAGLLSSFGELQYCLSDKPKLLPLELEKTACQEY 377

Query: 61  PITEYQPLYFVAESFEDAKDKMM---------FGVRYNPYTQSVDVIDSKVQ 103
            +TE+QPLY+VAESF DAK+K+          F VRY+PYTQ V+V+D+  Q
Sbjct: 378 SVTEFQPLYYVAESFSDAKEKVRTFAATIPRPFSVRYDPYTQRVEVLDNTQQ 429

>1j8u_A Phenylalanine-4-hydroxylase; ferrous iron, 2-His-1-carboxylate facial triad, tetrahydrobiopterin, oxidoreductase; HET: H4B; 1.50A {Homo sapiens} SCOP: d.178.1.1 PDB: 1j8t_A* 1kw0_A* 1lrm_A* 1mmk_A* 1mmt_A* 4anp_A* 2pah_A 1pah_A 3pah_A* 4pah_A* 5pah_A* 6pah_A* 1tdw_A 1tg2_A* 1dmw_A* Length = 325

 Score =  142 bits (360), Expect = 4e-43
 Identities = 62/109 (56%), Positives = 81/109 (74%), Gaps = 9/109 (8%)

Query: 1   MVEWSLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTY 60
           + + +  YWFTVEFGLC+Q   +KA+GAGLLSSFGELQYCLS+KP+  P E   TA+Q Y
Sbjct: 216 IEKLATIYWFTVEFGLCKQGDSIKAYGAGLLSSFGELQYCLSEKPKLLPLELEKTAIQNY 275

Query: 61  PITEYQPLYFVAESFEDAKDKM---------MFGVRYNPYTQSVDVIDS 100
            +TE+QPLY+VAESF DAK+K+          F VRY+PYTQ ++V+D+
Sbjct: 276 TVTEFQPLYYVAESFNDAKEKVRNFAATIPRPFSVRYDPYTQRIEVLDN 324

>1mlw_A Tryptophan 5-monooxygenase; aromatic amino acid hydroxylase catalytic domain fold, oxidoreductase; HET: HBI; 1.71A {Homo sapiens} SCOP: d.178.1.1 PDB: 3hf6_A* 3hf8_A* 3hfb_A* 3e2t_A* Length = 301

 Score =  122 bits (308), Expect = 1e-35
 Identities = 52/98 (53%), Positives = 69/98 (70%), Gaps = 9/98 (9%)

Query: 1   MVEWSLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTY 60
           + + + CY+FTVEFGLC+Q+GQL+ FGAGLLSS  EL++ LS   + KPF+P +T  Q  
Sbjct: 204 VQKLATCYFFTVEFGLCKQDGQLRVFGAGLLSSISELKHALSGHAKVKPFDPKITCKQEC 263

Query: 61  PITEYQPLYFVAESFEDAKDKMM---------FGVRYN 89
            IT +Q +YFV+ESFEDAK+KM          FGV+YN
Sbjct: 264 LITTFQDVYFVSESFEDAKEKMREFTKTIKRPFGVKYN 301

>1ltz_A Phenylalanine-4-hydroxylase; oxidoreductase, dihydrobiopterin, bacterial enzyme; HET: HBI; 1.40A {Chromobacterium violaceum} SCOP: d.178.1.1 PDB: 1ltv_A 1ltu_A* Length = 297

 Score =  119 bits (299), Expect = 3e-34
 Identities = 32/108 (29%), Positives = 47/108 (43%), Gaps = 8/108 (7%)

Query: 1   MVEWSLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCL-SDKPQRKPFEPSVTALQT 59
           +   +  YW+TVEFGL      ++ +GAG+LSS  E  YCL S  P R  F+        
Sbjct: 172 LPMLARLYWYTVEFGLINTPAGMRIYGAGILSSKSESIYCLDSASPNRVGFDLMRIMNTR 231

Query: 60  YPITEYQPLYFVAESFEDAKDK-------MMFGVRYNPYTQSVDVIDS 100
           Y I  +Q  YFV +SF+   D        +   +       + D+   
Sbjct: 232 YRIDTFQKTYFVIDSFKQLFDATAPDFAPLYLQLADAQPWGAGDIAPD 279

>2v27_A Phenylalanine hydroxylase; cold adaptation, tetrahydrobiopterin, stability, flexibility, alkaptonuria, oxidoreductase; 1.50A {Colwellia psychrerythraea 34H} PDB: 2v28_A Length = 275

 Score =  114 bits (286), Expect = 2e-32
 Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 1/80 (1%)

Query: 7   CYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDK-PQRKPFEPSVTALQTYPITEY 65
            YWFT+EFGL      L+ +G G+LSS GE  Y +++    RKPF+        Y I   
Sbjct: 161 LYWFTIEFGLLDTPKGLRIYGGGVLSSPGETDYAMNNTDVDRKPFDILDVLRTPYRIDIM 220

Query: 66  QPLYFVAESFEDAKDKMMFG 85
           QP+Y++     D  +   F 
Sbjct: 221 QPIYYMLTKVSDLDEIRKFE 240

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 4e-05
 Identities = 16/114 (14%), Positives = 30/114 (26%), Gaps = 26/114 (22%)

Query: 8   YWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQP 67
           +W       C     +      LL          SD                        
Sbjct: 185 FWLN--LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR---------------- 226

Query: 68  LYFVAESFEDAKDKMMFGVRYNPYTQSVDVIDSKVQLSELVQNINGEMQILLTS 121
                      + ++   ++  PY   + V+ + VQ ++     N   +ILLT+
Sbjct: 227 -------IHSIQAELRRLLKSKPYENCLLVLLN-VQNAKAWNAFNLSCKILLTT 272

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	125
1toh_A	343	Tyroh, tyrosine hydroxylase; neurotransmitter bios	100.0
1j8u_A	325	Phenylalanine-4-hydroxylase; ferrous iron, 2-His-1	100.0
1phz_A	429	Protein (phenylalanine hydroxylase); aromatic amin	100.0
1mlw_A	301	Tryptophan 5-monooxygenase; aromatic amino acid hy	100.0
2v27_A	275	Phenylalanine hydroxylase; cold adaptation, tetrah	100.0
3tk2_A	302	Phenylalanine-4-hydroxylase; protein-substate comp	100.0

>1toh_A Tyroh, tyrosine hydroxylase; neurotransmitter biosynthesis, non-heme iron, P substrate; 2.30A {Rattus norvegicus} SCOP: d.178.1.1 PDB: 2toh_A* 2xsn_A

Probab=100.00  E-value=2.1e-54  Score=361.93  Aligned_cols=125  Identities=49%  Similarity=0.928  Sum_probs=122.7

Q ss_pred             CccceeeeeEEEEEEEeeeCCceEEeecceecCHhhhhhhhCCCCccccCChhhhccccCCCCcccceeEEecChHHHhh
Q psy14594          1 MVEWSLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQPLYFVAESFEDAKD   80 (125)
Q Consensus         1 ~~~LarlyWfTVEFGL~~e~~~lkayGAGlLSS~gEl~~als~~~~~~pfdp~~~~~~~y~i~~~Qp~YFv~eSfe~l~~   80 (125)
                      +++|+||||||||||||+++|++||||||||||+||++||++++|+++||||+.+++|+|+|++|||+|||++||++|++
T Consensus       209 i~~LarlYWfTVEFGLi~e~g~lKaYGAGlLSS~GEl~~als~~p~~~pfd~~~~~~t~Y~I~~~Qp~YFV~eSfe~l~e  288 (343)
T 1toh_A          209 IEKLSTVYWFTVEFGLCKQNGELKAYGAGLLSSYGELLHSLSEEPEVRAFDPDTAAVQPYQDQTYQPVYFVSESFNDAKD  288 (343)
T ss_dssp             HHHHHHHHHTTTTTCEEEETTEEEECCHHHHTCHHHHHHHTSSSSEEEECCHHHHHTCCCCSSSCCSEEEEESCHHHHHH
T ss_pred             HHHHhhheeeeeecceeccCCceEEecccccCchHHHHHHcCCCCcccCCCHHHHcCCCCCCCCCccceEEeCCHHHHHH
Confidence            36799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccc---------eeeeecCccceEEeeCChhHHHHHHHHHHHHHHHHHHHhhcC
Q psy14594         81 KMM---------FGVRYNPYTQSVDVIDSKVQLSELVQNINGEMQILLTSLKKI  125 (125)
Q Consensus        81 ~lr---------F~~~Yd~~t~si~~~~~~~~~~~~~~~~~~~l~~l~~al~k~  125 (125)
                      +|+         |.++|||||+||+|+|++++++++++++++|++.|++||+||
T Consensus       289 ~l~~fa~~~~rpf~~~y~p~t~~i~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~  342 (343)
T 1toh_A          289 KLRNYASRIQRPFSVKFDPYTLAIDVLDSPHTIQRSLEGVQDELHTLAHALSAI  342 (343)
T ss_dssp             HHHHHHHTSCCSCEEEEETTTTEEEEECSHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhCCCCceeeeCCCcceEEecCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            998         999999999999999999999999999999999999999987

>1j8u_A Phenylalanine-4-hydroxylase; ferrous iron, 2-His-1-carboxylate facial triad, tetrahydrobiopterin, oxidoreductase; HET: H4B; 1.50A {Homo sapiens} SCOP: d.178.1.1 PDB: 1j8t_A* 1kw0_A* 1lrm_A* 1mmk_A* 1mmt_A* 4anp_A* 2pah_A 1pah_A 3pah_A* 4pah_A* 5pah_A* 6pah_A* 1tdw_A 1tg2_A* 1dmw_A*

Probab=100.00  E-value=4e-48  Score=322.22  Aligned_cols=101  Identities=61%  Similarity=1.130  Sum_probs=96.2

Q ss_pred             CccceeeeeEEEEEEEeeeCCceEEeecceecCHhhhhhhhCCCCccccCChhhhccccCCCCcccceeEEecChHHHhh
Q psy14594          1 MVEWSLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQPLYFVAESFEDAKD   80 (125)
Q Consensus         1 ~~~LarlyWfTVEFGL~~e~~~lkayGAGlLSS~gEl~~als~~~~~~pfdp~~~~~~~y~i~~~Qp~YFv~eSfe~l~~   80 (125)
                      +++|+||||||||||||+++|++||||||||||+||++||++++|+++||||+.+++|+|+|++|||+|||++||++|++
T Consensus       216 i~~LarlYWfTVEFGLi~e~g~lkaYGAGlLSS~GEl~~als~~p~~~pfd~~~~~~t~Y~I~~~Qp~YFV~~Sfe~l~~  295 (325)
T 1j8u_A          216 IEKLATIYWFTVEFGLCKQGDSIKAYGAGLLSSFGELQYCLSEKPKLLPLELEKTAIQNYTVTEFQPLYYVAESFNDAKE  295 (325)
T ss_dssp             HHHHHHHHHHTTTTCEEEETTEEEECCHHHHTCHHHHHHHTSSSSEEEECCHHHHTTCCCCSSSCCSEEEEESCHHHHHH
T ss_pred             HHHHhhheeeeeeeeeeccCCceEEecceeecChhHHHHhcCCCCeeccCCHHHHcCCCCCCCCcccceEEeCCHHHHHH
Confidence            36799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccc---------eeeeecCccceEEeeCCh
Q psy14594         81 KMM---------FGVRYNPYTQSVDVIDSK  101 (125)
Q Consensus        81 ~lr---------F~~~Yd~~t~si~~~~~~  101 (125)
                      +|+         |.++|||||+||+|+|++
T Consensus       296 ~l~~fa~~~~rpf~~~y~~~t~~v~~~~~~  325 (325)
T 1j8u_A          296 KVRNFAATIPRPFSVRYDPYTQRIEVLDNT  325 (325)
T ss_dssp             HHHHHHTTSCCSSCEEEETTTTEEEEC---
T ss_pred             HHHHHHHhCCCCceeeeCCCCceEEecCCC
Confidence            998         999999999999999874

>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A

Probab=100.00  E-value=3.9e-47  Score=325.63  Aligned_cols=103  Identities=62%  Similarity=1.099  Sum_probs=98.9

Q ss_pred             CccceeeeeEEEEEEEeeeCCceEEeecceecCHhhhhhhhCCCCccccCChhhhccccCCCCcccceeEEecChHHHhh
Q psy14594          1 MVEWSLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQPLYFVAESFEDAKD   80 (125)
Q Consensus         1 ~~~LarlyWfTVEFGL~~e~~~lkayGAGlLSS~gEl~~als~~~~~~pfdp~~~~~~~y~i~~~Qp~YFv~eSfe~l~~   80 (125)
                      +++|+||||||||||||+++|++||||||||||+||++|||+++|+++||||+++++|+|+|++|||+|||++||++|++
T Consensus       318 i~~LarlyWfTVEFGLi~~~~~lk~YGAGlLSS~gE~~~~ls~~p~~~pfd~~~~~~~~y~i~~~Qp~yFv~~sf~~l~~  397 (429)
T 1phz_A          318 IEKLATIYWFTVEFGLCKEGDSIKAYGAGLLSSFGELQYCLSDKPKLLPLELEKTACQEYSVTEFQPLYYVAESFSDAKE  397 (429)
T ss_dssp             HHHHHHHHHTTTTTCEEEETTEEEECCHHHHTCHHHHHHHTSSSSEEEECCHHHHTTCCCCSSSSCSEEEEESCHHHHHH
T ss_pred             HHHHhhhheeeeeeceeccCCceeeeccccccChhHHHHhcCCCCeeccCCHHHHcCCCCCCCCcccceEEeCCHHHHHH
Confidence            36799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccc---------eeeeecCccceEEeeCChhH
Q psy14594         81 KMM---------FGVRYNPYTQSVDVIDSKVQ  103 (125)
Q Consensus        81 ~lr---------F~~~Yd~~t~si~~~~~~~~  103 (125)
                      +|+         |.++|||||+||+|+|++++
T Consensus       398 ~~~~f~~~~~~pf~~~y~~~t~~~~~~~~~~~  429 (429)
T 1phz_A          398 KVRTFAATIPRPFSVRYDPYTQRVEVLDNTQQ  429 (429)
T ss_dssp             HHHHHHTTSCCSSEEEEETTTTEEEEECCC--
T ss_pred             HHHHHHHhCCCCcceeeCCCccEEEecCCCCC
Confidence            998         99999999999999999764

>1mlw_A Tryptophan 5-monooxygenase; aromatic amino acid hydroxylase catalytic domain fold, oxidoreductase; HET: HBI; 1.71A {Homo sapiens} SCOP: d.178.1.1 PDB: 3hf6_A* 3hf8_A* 3hfb_A* 3e2t_A*

Probab=100.00  E-value=1.1e-42  Score=287.35  Aligned_cols=89  Identities=58%  Similarity=1.035  Sum_probs=81.2

Q ss_pred             CccceeeeeEEEEEEEeeeCCceEEeecceecCHhhhhhhhCCCCccccCChhhhccccCCCCcccceeEEecChHHHhh
Q psy14594          1 MVEWSLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQPLYFVAESFEDAKD   80 (125)
Q Consensus         1 ~~~LarlyWfTVEFGL~~e~~~lkayGAGlLSS~gEl~~als~~~~~~pfdp~~~~~~~y~i~~~Qp~YFv~eSfe~l~~   80 (125)
                      +++|+||||||||||||+++|++||||||||||+||++||+|++|+++||||+.+++|+|+|++|||+|||++||++|++
T Consensus       204 i~~LarlYWfTVEFGLi~e~~~lkaYGAGlLSS~gEl~~als~~p~~~pfd~~~~~~t~Y~I~~~Qp~YFV~~Sfe~l~~  283 (301)
T 1mlw_A          204 VQKLATCYFFTVEFGLCKQDGQLRVFGAGLLSSISELKHALSGHAKVKPFDPKITCKQECLITTFQDVYFVSESFEDAKE  283 (301)
T ss_dssp             HHHHHHHHHTTTTTCEEEETTEEEECCHHHHTCHHHHHHHTSTTSEEEECCHHHHTTSCCCSSSCCSEEEECSCHHHHHH
T ss_pred             HHHHhhhheeeeecceeccCCceEEeccccccChHHHHHHcCCCCeecCCCHHHHcCCCCCCCCCccceEEECCHHHHHH
Confidence            36799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccc---------eeeeec
Q psy14594         81 KMM---------FGVRYN   89 (125)
Q Consensus        81 ~lr---------F~~~Yd   89 (125)
                      +|+         |+++||
T Consensus       284 ~~~~fa~~~~rpf~~~y~  301 (301)
T 1mlw_A          284 KMREFTKTIKRPFGVKYN  301 (301)
T ss_dssp             HHHHHHTTC---------
T ss_pred             HHHHHHHhCCCCcceeCC
Confidence            998         999997

>2v27_A Phenylalanine hydroxylase; cold adaptation, tetrahydrobiopterin, stability, flexibility, alkaptonuria, oxidoreductase; 1.50A {Colwellia psychrerythraea 34H} PDB: 2v28_A

Probab=100.00  E-value=3e-40  Score=270.09  Aligned_cols=83  Identities=34%  Similarity=0.598  Sum_probs=80.0

Q ss_pred             CccceeeeeEEEEEEEeeeCCceEEeecceecCHhhhhhhh-CCCCccccCChhhhccccCCCCcccceeEEecChHHHh
Q psy14594          1 MVEWSLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCL-SDKPQRKPFEPSVTALQTYPITEYQPLYFVAESFEDAK   79 (125)
Q Consensus         1 ~~~LarlyWfTVEFGL~~e~~~lkayGAGlLSS~gEl~~al-s~~~~~~pfdp~~~~~~~y~i~~~Qp~YFv~eSfe~l~   79 (125)
                      +++|+||||||||||||+++|++||||||||||+||++||+ +++|+++||||+++++|+|+|++|||+|||++||++|+
T Consensus       155 ~~~LarlYWfTVEFGLi~e~~~lkaYGAGiLSS~gEl~~al~s~~p~~~pfd~~~~~~t~Y~I~~~Qp~YFv~~sfe~l~  234 (275)
T 2v27_A          155 RVFLARLYWFTIEFGLLDTPKGLRIYGGGVLSSPGETDYAMNNTDVDRKPFDILDVLRTPYRIDIMQPIYYMLTKVSDLD  234 (275)
T ss_dssp             HHHHHHHHHHTTTTCEEEETTEEEECCHHHHTCHHHHHHHHHCSSCEEEECCHHHHHTCCCCTTSCCSEEEEESSGGGGH
T ss_pred             HHHHhhhhheeeeeeeecCCCceEEeccchhcCHHHHHHHhcCCCCeeccCCHHHHhCCCCCCCCCCCCeEEeCCHHHHH
Confidence            35799999999999999999999999999999999999999 78999999999999999999999999999999999999


Q ss_pred             hccc
Q psy14594         80 DKMM   83 (125)
Q Consensus        80 ~~lr   83 (125)
                      ++++
T Consensus       235 ~~~~  238 (275)
T 2v27_A          235 EIRK  238 (275)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            9876

>3tk2_A Phenylalanine-4-hydroxylase; protein-substate complex, mixed alpha, beta, tetrahydrobiopterin, iron (II), molecular OX hydroxylation; HET: PHE; 1.35A {Chromobacterium violaceum} PDB: 3tk4_A 3tcy_A* 1ltz_A* 1ltv_A 1ltu_A*

Probab=100.00  E-value=1.7e-38  Score=262.49  Aligned_cols=89  Identities=37%  Similarity=0.629  Sum_probs=83.7

Q ss_pred             ccceeeeeEEEEEEEeeeCCceEEeecceecCHhhhhhhh-CCCCccccCChhhhccccCCCCcccceeEEecChHHHhh
Q psy14594          2 VEWSLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCL-SDKPQRKPFEPSVTALQTYPITEYQPLYFVAESFEDAKD   80 (125)
Q Consensus         2 ~~LarlyWfTVEFGL~~e~~~lkayGAGlLSS~gEl~~al-s~~~~~~pfdp~~~~~~~y~i~~~Qp~YFv~eSfe~l~~   80 (125)
                      ++|+||||||||||||+++|++||||||||||+||+.||| +++|+++||||+++++|+|+|++|||+|||++||++|++
T Consensus       178 ~~LarlyWfTVEFGLi~~~~~~kiYGAGlLSS~gE~~~~l~s~~p~~~pfd~~~~~~~~y~i~~~Qp~yFv~~sfe~L~d  257 (302)
T 3tk2_A          178 PMLARLYWYTVEFGLINTPAGMRIYGAGILSSKSESIYCLDSASPNRVGFDLMRIMNTRYRIDTFQKTYFVIDSFKQLFD  257 (302)
T ss_dssp             HHHHHHHHHTTTTCEECCTTCCEECCHHHHTCSSHHHHHHHCSSSEEEECCHHHHHTBCCCSSSCCSEEEEESCHHHHHH
T ss_pred             HHhhheeEEEEEEEEEecCCceEEEeeeccCCHHHHHHHhcCCCCcccCCCHHHHhcCCCCcCCCCCCeEEeCCHHHHHH
Confidence            5799999999999999999999999999999999999999 688999999999999999999999999999999999999


Q ss_pred             ccc--eeeeecC
Q psy14594         81 KMM--FGVRYNP   90 (125)
Q Consensus        81 ~lr--F~~~Yd~   90 (125)
                      +++  |...|..
T Consensus       258 ~~~~df~~l~~~  269 (302)
T 3tk2_A          258 ATAPDFAPLYLQ  269 (302)
T ss_dssp             HTCSCCHHHHHH
T ss_pred             HHHHhHHHHHHH
Confidence            887  6555544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	125
d1toha_	336	d.178.1.1 (A:) Tyrosine hydroxylase {Rat (Rattus n	6e-59
d1j8ua_	307	d.178.1.1 (A:) Phenylalanine hydroxylase, PAH {Hum	8e-49
d1mlwa_	290	d.178.1.1 (A:) Tryptophan hydroxylase {Human (Homo	5e-39
d1ltza_	277	d.178.1.1 (A:) Phenylalanine hydroxylase, PAH {Chr	3e-36

>d1toha_ d.178.1.1 (A:) Tyrosine hydroxylase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 336

class: Alpha and beta proteins (a+b)
fold: Aromatic aminoacid monoxygenases, catalytic and oligomerization domains
superfamily: Aromatic aminoacid monoxygenases, catalytic and oligomerization domains
family: Aromatic aminoacid monoxygenases, catalytic and oligomerization domains
domain: Tyrosine hydroxylase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  182 bits (464), Expect = 6e-59
 Identities = 61/134 (45%), Positives = 89/134 (66%), Gaps = 9/134 (6%)

Query: 1   MVEWSLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTY 60
           + + S  YWFTVEFGLC+Q G+LKA+GAGLLSS+GEL + LS++P+ + F+P   A+Q Y
Sbjct: 202 IEKLSTVYWFTVEFGLCKQNGELKAYGAGLLSSYGELLHSLSEEPEVRAFDPDTAAVQPY 261

Query: 61  PITEYQPLYFVAESFEDAKDKMM---------FGVRYNPYTQSVDVIDSKVQLSELVQNI 111
               YQP+YFV+ESF DAKDK+          F V+++PYT ++DV+DS   +   ++ +
Sbjct: 262 QDQTYQPVYFVSESFNDAKDKLRNYASRIQRPFSVKFDPYTLAIDVLDSPHTIQRSLEGV 321

Query: 112 NGEMQILLTSLKKI 125
             E+  L  +L  I
Sbjct: 322 QDELHTLAHALSAI 335

>d1j8ua_ d.178.1.1 (A:) Phenylalanine hydroxylase, PAH {Human (Homo sapiens) [TaxId: 9606]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Aromatic aminoacid monoxygenases, catalytic and oligomerization domains
superfamily: Aromatic aminoacid monoxygenases, catalytic and oligomerization domains
family: Aromatic aminoacid monoxygenases, catalytic and oligomerization domains
domain: Phenylalanine hydroxylase, PAH
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  156 bits (395), Expect = 8e-49
 Identities = 61/107 (57%), Positives = 79/107 (73%), Gaps = 9/107 (8%)

Query: 1   MVEWSLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTY 60
           + + +  YWFTVEFGLC+Q   +KA+GAGLLSSFGELQYCLS+KP+  P E   TA+Q Y
Sbjct: 201 IEKLATIYWFTVEFGLCKQGDSIKAYGAGLLSSFGELQYCLSEKPKLLPLELEKTAIQNY 260

Query: 61  PITEYQPLYFVAESFEDAKDKM---------MFGVRYNPYTQSVDVI 98
            +TE+QPLY+VAESF DAK+K+          F VRY+PYTQ ++V+
Sbjct: 261 TVTEFQPLYYVAESFNDAKEKVRNFAATIPRPFSVRYDPYTQRIEVL 307

>d1mlwa_ d.178.1.1 (A:) Tryptophan hydroxylase {Human (Homo sapiens) [TaxId: 9606]} Length = 290

class: Alpha and beta proteins (a+b)
fold: Aromatic aminoacid monoxygenases, catalytic and oligomerization domains
superfamily: Aromatic aminoacid monoxygenases, catalytic and oligomerization domains
family: Aromatic aminoacid monoxygenases, catalytic and oligomerization domains
domain: Tryptophan hydroxylase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  130 bits (328), Expect = 5e-39
 Identities = 47/82 (57%), Positives = 63/82 (76%)

Query: 1   MVEWSLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTY 60
           + + + CY+FTVEFGLC+Q+GQL+ FGAGLLSS  EL++ LS   + KPF+P +T  Q  
Sbjct: 202 VQKLATCYFFTVEFGLCKQDGQLRVFGAGLLSSISELKHALSGHAKVKPFDPKITCKQEC 261

Query: 61  PITEYQPLYFVAESFEDAKDKM 82
            IT +Q +YFV+ESFEDAK+KM
Sbjct: 262 LITTFQDVYFVSESFEDAKEKM 283

>d1ltza_ d.178.1.1 (A:) Phenylalanine hydroxylase, PAH {Chromobacterium violaceum [TaxId: 536]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Aromatic aminoacid monoxygenases, catalytic and oligomerization domains
superfamily: Aromatic aminoacid monoxygenases, catalytic and oligomerization domains
family: Aromatic aminoacid monoxygenases, catalytic and oligomerization domains
domain: Phenylalanine hydroxylase, PAH
species: Chromobacterium violaceum [TaxId: 536]

 Score =  122 bits (308), Expect = 3e-36
 Identities = 32/108 (29%), Positives = 47/108 (43%), Gaps = 8/108 (7%)

Query: 1   MVEWSLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCL-SDKPQRKPFEPSVTALQT 59
           +   +  YW+TVEFGL      ++ +GAG+LSS  E  YCL S  P R  F+        
Sbjct: 166 LPMLARLYWYTVEFGLINTPAGMRIYGAGILSSKSESIYCLDSASPNRVGFDLMRIMNTR 225

Query: 60  YPITEYQPLYFVAESFEDAKD-------KMMFGVRYNPYTQSVDVIDS 100
           Y I  +Q  YFV +SF+   D        +   +       + D+   
Sbjct: 226 YRIDTFQKTYFVIDSFKQLFDATAPDFAPLYLQLADAQPWGAGDIAPD 273

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	125
d1toha_	336	Tyrosine hydroxylase {Rat (Rattus norvegicus) [Tax	100.0
d1j8ua_	307	Phenylalanine hydroxylase, PAH {Human (Homo sapien	100.0
d1mlwa_	290	Tryptophan hydroxylase {Human (Homo sapiens) [TaxI	100.0
d1ltza_	277	Phenylalanine hydroxylase, PAH {Chromobacterium vi	100.0

>d1toha_ d.178.1.1 (A:) Tyrosine hydroxylase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Aromatic aminoacid monoxygenases, catalytic and oligomerization domains
superfamily: Aromatic aminoacid monoxygenases, catalytic and oligomerization domains
family: Aromatic aminoacid monoxygenases, catalytic and oligomerization domains
domain: Tyrosine hydroxylase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=3.3e-54  Score=358.12  Aligned_cols=125  Identities=49%  Similarity=0.928  Sum_probs=122.9

Q ss_pred             CccceeeeeEEEEEEEeeeCCceEEeecceecCHhhhhhhhCCCCccccCChhhhccccCCCCcccceeEEecChHHHhh
Q psy14594          1 MVEWSLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQPLYFVAESFEDAKD   80 (125)
Q Consensus         1 ~~~LarlyWfTVEFGL~~e~~~lkayGAGlLSS~gEl~~als~~~~~~pfdp~~~~~~~y~i~~~Qp~YFv~eSfe~l~~   80 (125)
                      +++|+||||||||||||+++|++||||||||||+||++||+|++|+++||||+.+++|+|+|++|||+|||++|||||++
T Consensus       202 i~~LarlYWfTVEFGLi~e~g~lKaYGAGLLSS~gEl~~als~~~~~~pfd~~~v~~t~y~i~~~Qp~YFV~~Sfe~l~e  281 (336)
T d1toha_         202 IEKLSTVYWFTVEFGLCKQNGELKAYGAGLLSSYGELLHSLSEEPEVRAFDPDTAAVQPYQDQTYQPVYFVSESFNDAKD  281 (336)
T ss_dssp             HHHHHHHHHTTTTTCEEEETTEEEECCHHHHTCHHHHHHHTSSSSEEEECCHHHHHTCCCCSSSCCSEEEEESCHHHHHH
T ss_pred             HHHHhhhheeeEeeeeeccCCCceEecccccCCHHHHHHHccCCCcccCCCHHHHhcCCCCCCccccceEEECCHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccc---------eeeeecCccceEEeeCChhHHHHHHHHHHHHHHHHHHHhhcC
Q psy14594         81 KMM---------FGVRYNPYTQSVDVIDSKVQLSELVQNINGEMQILLTSLKKI  125 (125)
Q Consensus        81 ~lr---------F~~~Yd~~t~si~~~~~~~~~~~~~~~~~~~l~~l~~al~k~  125 (125)
                      +||         |.++|||+|+||+|+|+.++++++++++++||..|++||+||
T Consensus       282 ~l~~fa~~~~rpf~~~y~p~t~~vevl~~~~~~~~~~~~~~~~~~~~~~a~~~~  335 (336)
T d1toha_         282 KLRNYASRIQRPFSVKFDPYTLAIDVLDSPHTIQRSLEGVQDELHTLAHALSAI  335 (336)
T ss_dssp             HHHHHHHTSCCSCEEEEETTTTEEEEECSHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcCCCcccccCCccceEEeeCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999         999999999999999999999999999999999999999997

>d1j8ua_ d.178.1.1 (A:) Phenylalanine hydroxylase, PAH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Aromatic aminoacid monoxygenases, catalytic and oligomerization domains
superfamily: Aromatic aminoacid monoxygenases, catalytic and oligomerization domains
family: Aromatic aminoacid monoxygenases, catalytic and oligomerization domains
domain: Phenylalanine hydroxylase, PAH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.8e-48  Score=317.49  Aligned_cols=98  Identities=62%  Similarity=1.145  Sum_probs=95.9

Q ss_pred             CccceeeeeEEEEEEEeeeCCceEEeecceecCHhhhhhhhCCCCccccCChhhhccccCCCCcccceeEEecChHHHhh
Q psy14594          1 MVEWSLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQPLYFVAESFEDAKD   80 (125)
Q Consensus         1 ~~~LarlyWfTVEFGL~~e~~~lkayGAGlLSS~gEl~~als~~~~~~pfdp~~~~~~~y~i~~~Qp~YFv~eSfe~l~~   80 (125)
                      +++|+||||||||||||+++|++||||||||||+||++||+|++|+++||||+.+++|+|+|++|||+|||++|||||++
T Consensus       201 i~~LarlYWfTVEFGL~~e~g~~KaYGAGlLSS~gEl~~als~~~~~~pfd~~~~~~t~y~it~~Qp~YFv~~Sfe~l~~  280 (307)
T d1j8ua_         201 IEKLATIYWFTVEFGLCKQGDSIKAYGAGLLSSFGELQYCLSEKPKLLPLELEKTAIQNYTVTEFQPLYYVAESFNDAKE  280 (307)
T ss_dssp             HHHHHHHHHHTTTTCEEEETTEEEECCHHHHTCHHHHHHHTSSSSEEEECCHHHHTTCCCCSSSCCSEEEEESCHHHHHH
T ss_pred             HHHHhhhheeeEEeeeeccCCCceEecccccCCHHHHHHHcCCCCccCCCCHHHHhcCCCCCCCcCCCeEEeCCHHHHHH
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccc---------eeeeecCccceEEee
Q psy14594         81 KMM---------FGVRYNPYTQSVDVI   98 (125)
Q Consensus        81 ~lr---------F~~~Yd~~t~si~~~   98 (125)
                      +|+         |.++|||||||||||
T Consensus       281 ~l~~f~~~~~rpf~~~y~p~t~~v~~~  307 (307)
T d1j8ua_         281 KVRNFAATIPRPFSVRYDPYTQRIEVL  307 (307)
T ss_dssp             HHHHHHTTSCCSSCEEEETTTTEEEEC
T ss_pred             HHHHHHHhcCCCCccccCCccceEeeC
Confidence            999         999999999999996

>d1mlwa_ d.178.1.1 (A:) Tryptophan hydroxylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Aromatic aminoacid monoxygenases, catalytic and oligomerization domains
superfamily: Aromatic aminoacid monoxygenases, catalytic and oligomerization domains
family: Aromatic aminoacid monoxygenases, catalytic and oligomerization domains
domain: Tryptophan hydroxylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-40  Score=270.54  Aligned_cols=83  Identities=57%  Similarity=0.985  Sum_probs=81.2

Q ss_pred             CccceeeeeEEEEEEEeeeCCceEEeecceecCHhhhhhhhCCCCccccCChhhhccccCCCCcccceeEEecChHHHhh
Q psy14594          1 MVEWSLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQPLYFVAESFEDAKD   80 (125)
Q Consensus         1 ~~~LarlyWfTVEFGL~~e~~~lkayGAGlLSS~gEl~~als~~~~~~pfdp~~~~~~~y~i~~~Qp~YFv~eSfe~l~~   80 (125)
                      +++|+||||||||||||+++|++||||||||||+||++||+|++|+++||||+.+++|+|+|++|||+|||++||+||++
T Consensus       202 i~~LarlyWfTVEFGLi~e~g~lK~YGAGlLSS~gEl~~als~~~~~~pfd~~~~~~~~y~i~~~Qp~YFv~~Sfe~l~~  281 (290)
T d1mlwa_         202 VQKLATCYFFTVEFGLCKQDGQLRVFGAGLLSSISELKHALSGHAKVKPFDPKITCKQECLITTFQDVYFVSESFEDAKE  281 (290)
T ss_dssp             HHHHHHHHHTTTTTCEEEETTEEEECCHHHHTCHHHHHHHTSTTSEEEECCHHHHTTSCCCSSSCCSEEEECSCHHHHHH
T ss_pred             HHHhhhhheeeEeeeEEecCCccEEEeceeccCHHHHHHHhcCCCCCCCCCHHHHhcCCCCCCCCCCceEEeCCHHHHHH
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccc
Q psy14594         81 KMM   83 (125)
Q Consensus        81 ~lr   83 (125)
                      +|+
T Consensus       282 ~l~  284 (290)
T d1mlwa_         282 KMR  284 (290)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            987

>d1ltza_ d.178.1.1 (A:) Phenylalanine hydroxylase, PAH {Chromobacterium violaceum [TaxId: 536]}

class: Alpha and beta proteins (a+b)
fold: Aromatic aminoacid monoxygenases, catalytic and oligomerization domains
superfamily: Aromatic aminoacid monoxygenases, catalytic and oligomerization domains
family: Aromatic aminoacid monoxygenases, catalytic and oligomerization domains
domain: Phenylalanine hydroxylase, PAH
species: Chromobacterium violaceum [TaxId: 536]

Probab=100.00  E-value=8.6e-38  Score=253.81  Aligned_cols=82  Identities=38%  Similarity=0.649  Sum_probs=77.5

Q ss_pred             ccceeeeeEEEEEEEeeeCCceEEeecceecCHhhhhhhh-CCCCccccCChhhhccccCCCCcccceeEEecChHHHhh
Q psy14594          2 VEWSLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCL-SDKPQRKPFEPSVTALQTYPITEYQPLYFVAESFEDAKD   80 (125)
Q Consensus         2 ~~LarlyWfTVEFGL~~e~~~lkayGAGlLSS~gEl~~al-s~~~~~~pfdp~~~~~~~y~i~~~Qp~YFv~eSfe~l~~   80 (125)
                      ++|+||||||||||||+++|++||||||||||+||+.||+ ++.|+++||||+.+++++|+|++|||+|||++||+||.+
T Consensus       167 ~~L~rlyWfTvEFGLi~~~~~~kiYGAGiLSS~gE~~~~l~~~~~~~~pfd~~~v~~t~y~i~~~Q~~yFv~~sfe~L~~  246 (277)
T d1ltza_         167 PMLARLYWYTVEFGLINTPAGMRIYGAGILSSKSESIYCLDSASPNRVGFDLMRIMNTRYRIDTFQKTYFVIDSFKQLFD  246 (277)
T ss_dssp             HHHHHHHHHTTTTCEEEETTEEEECCHHHHTCHHHHHHTTSCSSSEEEECCHHHHHTBCCCSSSCCSEEEEESCHHHHHH
T ss_pred             HHHhhheeeeeeeeeEccCCCcEEecccccCCHHHHHHHhcCCCCcccCCCHHHHhcCCCCcCCcCccceeeCCHHHHHH
Confidence            5799999999999999999999999999999999999999 567999999999999999999999999999999999999


Q ss_pred             ccc
Q psy14594         81 KMM   83 (125)
Q Consensus        81 ~lr   83 (125)
                      .+.
T Consensus       247 ~~~  249 (277)
T d1ltza_         247 ATA  249 (277)
T ss_dssp             C--
T ss_pred             HHH
Confidence            876