Psyllid ID: psy14606

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-----
Protein Sequence
MSHIQDLQTEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPETASPPAEEVKEKEVLCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCSCPPLPGKLEDMASLLRLPRQHR
Secondary Structure (PSIPRED)
cccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccEEEEcccccccccccccccccccccccccccccccccccccccHHHcEEEEEcccccc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHEEEcccccEEEEEccccccccEEEcccccccccccccccHHHHHcccHHHccccccccccccccccccccccccEEEEccccccccHHHccccccHHcccccEEccccccccccccHEEEEEEcccccccc
Coil and Loop (DISEMBL)
MSHIQDLQTEHQDYCEVCQqggeiilcdtcprayhlccldpeldetpegkwscprcvsdgppetasppaeevkeKEVLcakckspgdqfllcetcngsyhphclpdpiegelptsgwkcpkcscpplpgkledmasllrlprqhr
Flexible Loop (DISEMBL)
MSHIQDLQTEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPETASPPAEEVKEKEVLCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCSCPPLPGKLedmasllrlprqhr
Low Complexity Region (SEG)
MSHIQDLQTEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPETASPPAEEVKEKEVLCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCSCPPLPGKLEDMASLLRLPRQHR
Disordered region (IsUnstruct)
***********QDYCEVCQQGGEIILCDTCPRAYHLCCLDPELD******W*************************VLCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCSC*********************
Disordered Region (DISOPRED)
*******QTEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPETASPPAEEVKEKEVLC***KSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCSCPP**GKLEDMASLLRLPRQ**
Disordered Region (DISEMBL)
MSHIQDLQTEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCP**********************VLCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCSCPPLPGKLEDMASLLRLPRQHR
Disordered Region (DISPRO)
********TEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPETASPPAEEVKEKEVLCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCSCPPLPGKLEDMASLLRLPR***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSHIQDLQTEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPETASPPAEEVKEKEVLCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCSCPPLPGKLEDMASLLRLPRQHR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	145	2.2.26 [Sep-21-2011]
Q6PDQ2	1915	Chromodomain-helicase-DNA	yes	N/A	0.910	0.068	0.469	3e-32
O97159	1982	Chromodomain-helicase-DNA	yes	N/A	0.868	0.063	0.537	8e-32
Q14839	1912	Chromodomain-helicase-DNA	yes	N/A	0.910	0.069	0.476	1e-31
Q8TDI0	1954	Chromodomain-helicase-DNA	no	N/A	0.862	0.063	0.536	5e-31
Q12873	2000	Chromodomain-helicase-DNA	no	N/A	0.889	0.064	0.479	9e-30
Q22516	1787	Chromodomain-helicase-DNA	yes	N/A	0.875	0.071	0.423	2e-22
G5EBZ4	1829	Protein let-418 OS=Caenor	no	N/A	0.841	0.066	0.421	6e-22
Q96BD5	680	PHD finger protein 21A OS	no	N/A	0.268	0.057	0.565	2e-12
Q6ZPK0	659	PHD finger protein 21A OS	no	N/A	0.289	0.063	0.543	6e-12
O43918	545	Autoimmune regulator OS=H	no	N/A	0.475	0.126	0.471	2e-10

>sp|Q6PDQ2|CHD4_MOUSE Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus GN=Chd4 PE=1 SV=1

 Score =  136 bits (343), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 70/149 (46%), Positives = 90/149 (60%), Gaps = 17/149 (11%)

Query: 1   MSHIQDLQTEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDG 60
           ++ +   +T+HQDYCEVCQQGGEIILCDTCPRAYH+ CLDP++++ PEGKWSCP C  +G
Sbjct: 352 VTAVDGYETDHQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKEG 411

Query: 61  P---------------PETASPPAEEVKEKEVLCAKCKSPGDQFLLCETCNGSYHPHCLP 105
                            E    P EE       C  CK  G + L C+TC  SYH HCL 
Sbjct: 412 IQWEAKEDNSEGEEILEEVGGDPEEEDDHHMEFCRVCKDGG-ELLCCDTCPSSYHIHCLN 470

Query: 106 DPIEGELPTSGWKCPKCSCPPLPGKLEDM 134
            P+  E+P   W CP+C+CP L GK++ +
Sbjct: 471 PPLP-EIPNGEWLCPRCTCPALKGKVQKI 498

Component of the histone deacetylase NuRD complex which participates in the remodeling of chromatin by deacetylating histones.
Mus musculus (taxid: 10090)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 2

>sp|O97159|CHDM_DROME Chromodomain-helicase-DNA-binding protein Mi-2 homolog OS=Drosophila melanogaster GN=Mi-2 PE=1 SV=2

 Score =  135 bits (340), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 71/132 (53%), Positives = 90/132 (68%), Gaps = 6/132 (4%)

Query: 5   QDLQTEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPET 64
           +D + EHQDYCEVCQQGGEIILCDTCPRAYHL CL+PELDE PEGKWSCP C +    + 
Sbjct: 370 EDGEHEHQDYCEVCQQGGEIILCDTCPRAYHLVCLEPELDEPPEGKWSCPHCEA----DG 425

Query: 65  ASPPAEEVKEKEVLCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCSC 124
            +   E+  E +  C  CK  G + L C++C  +YH  CL  P++  +P   W+CP+CSC
Sbjct: 426 GAAEEEDDDEHQEFCRVCKDGG-ELLCCDSCPSAYHTFCLNPPLDT-IPDGDWRCPRCSC 483

Query: 125 PPLPGKLEDMAS 136
           PPL GK E + +
Sbjct: 484 PPLTGKAEKIIT 495

Vital role in development. Protein binds to a portion of Hunchback (HB) protein that is critical for repression of bithorax complex (BXC) genes. May also function in polycomb group (PcG) repression of Hox genes.

Drosophila melanogaster (taxid: 7227)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|Q14839|CHD4_HUMAN Chromodomain-helicase-DNA-binding protein 4 OS=Homo sapiens GN=CHD4 PE=1 SV=2

 Score =  134 bits (338), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 71/149 (47%), Positives = 93/149 (62%), Gaps = 17/149 (11%)

Query: 1   MSHIQDLQTEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDG 60
           ++ +   +T+HQDYCEVCQQGGEIILCDTCPRAYH+ CLDP++++ PEGKWSCP C  +G
Sbjct: 359 VTAVDGYETDHQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKEG 418

Query: 61  PPETASPPAEEVKE--KEV-------------LCAKCKSPGDQFLLCETCNGSYHPHCLP 105
               A     E +E  +EV              C  CK  G + L C+TC  SYH HCL 
Sbjct: 419 IQWEAKEDNSEGEEILEEVGGDLEEEDDHHMEFCRVCKD-GGELLCCDTCPSSYHIHCLN 477

Query: 106 DPIEGELPTSGWKCPKCSCPPLPGKLEDM 134
            P+  E+P   W CP+C+CP L GK++ +
Sbjct: 478 PPLP-EIPNGEWLCPRCTCPALKGKVQKI 505

Component of the histone deacetylase NuRD complex which participates in the remodeling of chromatin by deacetylating histones.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|Q8TDI0|CHD5_HUMAN Chromodomain-helicase-DNA-binding protein 5 OS=Homo sapiens GN=CHD5 PE=2 SV=1

 Score =  132 bits (333), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 73/136 (53%), Positives = 89/136 (65%), Gaps = 11/136 (8%)

Query: 8   QTEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDG---PPET 64
           +T+HQDYCEVCQQGGEIILCDTCPRAYHL CLDPEL++ PEGKWSCP C  +G    P+ 
Sbjct: 339 ETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELEKAPEGKWSCPHCEKEGIQWEPKD 398

Query: 65  ASPPAEEVKEKEV------LCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWK 118
                EE   +E        C  CK  G + L C+ C  SYH HCL  P+  E+P   W 
Sbjct: 399 DDDEEEEGGCEEEEDDHMEFCRVCKD-GGELLCCDACPSSYHLHCLNPPLP-EIPNGEWL 456

Query: 119 CPKCSCPPLPGKLEDM 134
           CP+C+CPPL GK++ +
Sbjct: 457 CPRCTCPPLKGKVQRI 472

May play a role in the development of the nervous system and the pathogenesis of neural tumors.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|Q12873|CHD3_HUMAN Chromodomain-helicase-DNA-binding protein 3 OS=Homo sapiens GN=CHD3 PE=1 SV=3

 Score =  129 bits (323), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 69/144 (47%), Positives = 85/144 (59%), Gaps = 15/144 (10%)

Query: 4   IQDLQTEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDG--- 60
           +   +T+HQDYCEVCQQGGEIILCDTCPRAYHL CLDPELD  PEGKWSCP C  +G   
Sbjct: 371 VDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELDRAPEGKWSCPHCEKEGVQW 430

Query: 61  ----------PPETASPPAEEVKEKEVLCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEG 110
                              EE  +    C  CK  G + L C+ C  SYH HCL  P+  
Sbjct: 431 EAKEEEEEYEEEGEEEGEKEEEDDHMEYCRVCKD-GGELLCCDACISSYHIHCLNPPLP- 488

Query: 111 ELPTSGWKCPKCSCPPLPGKLEDM 134
           ++P   W CP+C+CP L G+++ +
Sbjct: 489 DIPNGEWLCPRCTCPVLKGRVQKI 512

Component of the histone deacetylase NuRD complex which participates in the remodeling of chromatin by deacetylating histones. Required for anchoring centrosomal pericentrin in both interphase and mitosis, for spindle organization and centrosome integrity.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|Q22516|CHD3_CAEEL Chromodomain-helicase-DNA-binding protein 3 homolog OS=Caenorhabditis elegans GN=chd-3 PE=2 SV=2

 Score =  104 bits (260), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 55/130 (42%), Positives = 75/130 (57%), Gaps = 3/130 (2%)

Query: 7   LQTEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPETAS 66
           ++  HQ+ CEVC Q GE++LCDTC RAYH+ C+D  +++ PEG WSCP C   G P+   
Sbjct: 260 VEENHQENCEVCNQDGELMLCDTCTRAYHVACIDENMEQPPEGDWSCPHCEEHG-PDVLI 318

Query: 67  PPAEEVKEKEVLCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCSCPP 126
              E  K     C  CK   +  LLC+TC  SYH +C+ DP   E+P   W CP+C  P 
Sbjct: 319 VEEEPAKANMDYCRICKETSN-ILLCDTCPSSYHAYCI-DPPLTEIPEGEWSCPRCIIPE 376

Query: 127 LPGKLEDMAS 136
              ++E + S
Sbjct: 377 PAQRIEKILS 386

Chromatin-remodeling protein that function in vulval cell fate determination.

Caenorhabditis elegans (taxid: 6239)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|G5EBZ4|LE418_CAEEL Protein let-418 OS=Caenorhabditis elegans GN=let-418 PE=1 SV=1

 Score =  102 bits (255), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 54/128 (42%), Positives = 75/128 (58%), Gaps = 6/128 (4%)

Query: 8   QTEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPETASP 67
           + E+ DYCE C+Q GE++LCDTCPRAYH  C+D  ++E PEG WSC  C+  GP      
Sbjct: 252 EAENNDYCEECKQDGELLLCDTCPRAYHTVCIDENMEEPPEGDWSCAHCIEHGPEVVKEE 311

Query: 68  PAEEVKEKEVLCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPT-SGWKCPKCSCPP 126
           PA   K+ +  C  CK   +  LLC++C  S+H +C+ DP   E+P    W CP+C    
Sbjct: 312 PA---KQNDEFCKICKET-ENLLLCDSCVCSFHAYCI-DPPLTEVPKEETWSCPRCETVK 366

Query: 127 LPGKLEDM 134
              K+E +
Sbjct: 367 PEHKIEKI 374

Part of a NuRD (Nucleosome Remodeling and Deacetylase) complex which is implicated in the synMuv B pathway that negatively regulates specification of vulval cell fate. This negative regulation is thought to be mediated via interaction with the promoter of lin-39, a key regulator in vulva development, and is dependent on the presence lin-1. Contributes to negative regulation of lag-2 which is expressed in the gut during larval development. Has a broad role in development.

Caenorhabditis elegans (taxid: 6239)

>sp|Q96BD5|PF21A_HUMAN PHD finger protein 21A OS=Homo sapiens GN=PHF21A PE=1 SV=1

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 26/46 (56%), Positives = 35/46 (76%)

Query: 11  HQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRC 56
           H+D+C VC++ G++++CDTC R YHL CLDP L   P+G W CPRC
Sbjct: 487 HEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRC 532

Component of the BHC complex, a corepressor complex that represses transcription of neuron-specific genes in non-neuronal cells. The BHC complex is recruited at RE1/NRSE sites by REST and acts by deacetylating and demethylating specific sites on histones, thereby acting as a chromatin modifier. In the BHC complex, it may act as a scaffold. Inhibits KDM1A-mediated demethylation of 'Lys-4' of histone H3 in vitro, suggesting a role in demethylation regulation.

Homo sapiens (taxid: 9606)

>sp|Q6ZPK0|PF21A_MOUSE PHD finger protein 21A OS=Mus musculus GN=Phf21a PE=1 SV=2

 Score = 69.3 bits (168), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 25/46 (54%), Positives = 35/46 (76%)

Query: 11  HQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRC 56
           H+D+C VC++ G++++CDTC R YHL CL+P L   P+G W CPRC
Sbjct: 467 HEDFCSVCRKSGQLLMCDTCSRVYHLDCLEPPLKTIPKGMWICPRC 512

Component of the BHC complex, a corepressor complex that represses transcription of neuron-specific genes in non-neuronal cells. The BHC complex is recruited at RE1/NRSE sites by REST and acts by deacetylating and demethylating specific sites on histones, thereby acting as a chromatin modifier. In the BHC complex, it may act as a scaffold. Inhibits KDM1A-mediated demethylation of 'Lys-4' of histone H3 in vitro, suggesting a role in demethylation regulation.

Mus musculus (taxid: 10090)

>sp|O43918|AIRE_HUMAN Autoimmune regulator OS=Homo sapiens GN=AIRE PE=1 SV=1

 Score = 65.1 bits (157), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 42/70 (60%), Gaps = 1/70 (1%)

Query: 7   LQTEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPETAS 66
           L  +++D C VC+ GGE+I CD CPRA+HL CL P L E P G W C  C+     E   
Sbjct: 291 LHQKNEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQEV-Q 349

Query: 67  PPAEEVKEKE 76
           P AEE + +E
Sbjct: 350 PRAEEPRPQE 359

Transcriptional regulator that binds to DNA as a dimer or as a tetramer, but not as a monomer. Binds to G-doublets in an A/T-rich environment; the preferred motif is a tandem repeat of 5'-. ATTGGTTA-3' combined with a 5'-TTATTA-3' box. Binds to nucleosomes (By similarity). Binds to chromatin and interacts selectively with histone H3 that is not methylated at 'Lys-4', not phosphorylated at 'Thr-3' and not methylated at 'Arg-2'. Functions as a sensor of histone H3 modifications that are important for the epigenetic regulation of gene expression. Functions as a transcriptional activator and promotes the expression of otherwise tissue-specific self-antigens in the thymus, which is important for self tolerance and the avoidance of autoimmune reactions.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	145
189240851	1966	PREDICTED: similar to chromodomain helic	0.820	0.060	0.574	5e-34
270013510	1969	hypothetical protein TcasGA2_TC012115 [T	0.820	0.060	0.574	6e-34
242023690	1999	Chromodomain helicase-DNA-binding protei	0.8	0.058	0.588	2e-33
357605668	1963	putative Chromodomain helicase-DNA-bindi	0.806	0.059	0.588	8e-33
312372079	2227	hypothetical protein AND_20633 [Anophele	0.806	0.052	0.56	8e-33
157134600	1983	chromodomain helicase DNA binding protei	0.820	0.060	0.551	1e-32
158300661	2037	AGAP012009-PA [Anopheles gambiae str. PE	0.820	0.058	0.543	5e-32
321479460	2083	hypothetical protein DAPPUDRAFT_232072 [	0.841	0.058	0.534	7e-31
405972247	2123	Chromodomain-helicase-DNA-binding protei	0.8	0.054	0.564	9e-31
328716042	2002	PREDICTED: chromodomain-helicase-DNA-bin	0.820	0.059	0.566	9e-31

>gi|189240851|ref|XP_001812556.1| PREDICTED: similar to chromodomain helicase-DNA-binding protein 3 [Tribolium castaneum]

 Score =  148 bits (374), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 73/127 (57%), Positives = 90/127 (70%), Gaps = 8/127 (6%)

Query: 10  EHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPETASPPA 69
           EHQDYCEVCQQGGEIILCDTCPRAYHL CLDPEL++TPEGKWSCP C ++GP E      
Sbjct: 371 EHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELEDTPEGKWSCPHCENEGPAE------ 424

Query: 70  EEVKEKEVLCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCSCPPLPG 129
           ++  E +  C  CK  G + L C++C  +YH HCL  P+  E+P   WKCP+CSC PL G
Sbjct: 425 QDDDEHQEFCRICKDGG-ELLCCDSCPSAYHTHCLNPPL-VEIPDGDWKCPRCSCAPLKG 482

Query: 130 KLEDMAS 136
           K+  + +
Sbjct: 483 KIAKLFT 489

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270013510|gb|EFA09958.1| hypothetical protein TcasGA2_TC012115 [Tribolium castaneum]

 Score =  148 bits (374), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 73/127 (57%), Positives = 90/127 (70%), Gaps = 8/127 (6%)

Query: 10  EHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPETASPPA 69
           EHQDYCEVCQQGGEIILCDTCPRAYHL CLDPEL++TPEGKWSCP C ++GP E      
Sbjct: 374 EHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELEDTPEGKWSCPHCENEGPAE------ 427

Query: 70  EEVKEKEVLCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCSCPPLPG 129
           ++  E +  C  CK  G + L C++C  +YH HCL  P+  E+P   WKCP+CSC PL G
Sbjct: 428 QDDDEHQEFCRICKDGG-ELLCCDSCPSAYHTHCLNPPL-VEIPDGDWKCPRCSCAPLKG 485

Query: 130 KLEDMAS 136
           K+  + +
Sbjct: 486 KIAKLFT 492

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242023690|ref|XP_002432264.1| Chromodomain helicase-DNA-binding protein, putative [Pediculus humanus corporis] gi|212517673|gb|EEB19526.1| Chromodomain helicase-DNA-binding protein, putative [Pediculus humanus corporis]

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 73/124 (58%), Positives = 86/124 (69%), Gaps = 8/124 (6%)

Query: 8   QTEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPETASP 67
           Q EHQDYCEVCQQGGEIILCDTCPRAYHL CLDPEL+ETPEGKWSCP C ++G  E    
Sbjct: 347 QQEHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELEETPEGKWSCPHCEAEGTQE---- 402

Query: 68  PAEEVKEKEVLCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCSCPPL 127
             ++  E    C  CK  G + L C++C  +YH  CL  P+  E+P   WKCP+CS  PL
Sbjct: 403 --QDDDEHNEFCRLCKDGG-ELLCCDSCTSAYHIFCLNPPL-SEIPDGDWKCPRCSAEPL 458

Query: 128 PGKL 131
           PGK+
Sbjct: 459 PGKV 462

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357605668|gb|EHJ64730.1| putative Chromodomain helicase-DNA-binding protein Mi-2-like protein [Danaus plexippus]

 Score =  145 bits (365), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 73/124 (58%), Positives = 88/124 (70%), Gaps = 7/124 (5%)

Query: 8   QTEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPETASP 67
           + EHQDYCEVCQQGGEIILCDTCPRAYHL CLDPEL+ETPEG+WSC  C ++G  E    
Sbjct: 371 EQEHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELEETPEGRWSCTYCQAEGNQEQ--- 427

Query: 68  PAEEVKEKEVLCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCSCPPL 127
             E+  E +  C  CK  G + L C++C  +YH  CL  P+E E+P   WKCP+CSCPPL
Sbjct: 428 --EDDDEHQEFCRICKDGG-ELLCCDSCPSAYHRFCLNPPLE-EVPDGEWKCPRCSCPPL 483

Query: 128 PGKL 131
            GK+
Sbjct: 484 DGKV 487

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312372079|gb|EFR20122.1| hypothetical protein AND_20633 [Anopheles darlingi]

 Score =  145 bits (365), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 70/125 (56%), Positives = 90/125 (72%), Gaps = 8/125 (6%)

Query: 10  EHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPETASPPA 69
           EHQDYCEVCQQGGEIILCDTCP+AYHL CLDPEL++TPEGKWSCP C ++GP +      
Sbjct: 454 EHQDYCEVCQQGGEIILCDTCPKAYHLVCLDPELEDTPEGKWSCPTCEAEGPAD------ 507

Query: 70  EEVKEKEVLCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCSCPPLPG 129
           E+  E +  C  CK  G + L C+ C  +YH  CL  P++ ++P   W+CP+CSCPPLP 
Sbjct: 508 EDDDEHQEFCRICKDGG-ELLCCDNCPSAYHTFCLNPPLD-DIPDGDWRCPRCSCPPLPD 565

Query: 130 KLEDM 134
           K++ +
Sbjct: 566 KVQKI 570

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157134600|ref|XP_001663323.1| chromodomain helicase DNA binding protein [Aedes aegypti] gi|108870421|gb|EAT34646.1| AAEL013136-PA [Aedes aegypti]

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 70/127 (55%), Positives = 92/127 (72%), Gaps = 8/127 (6%)

Query: 5   QDLQTEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPET 64
           +D + EHQDYCEVCQQGGEIILCDTCP+AYHL CLDPEL++TPEGKWSCP C ++GP + 
Sbjct: 371 EDGEFEHQDYCEVCQQGGEIILCDTCPKAYHLVCLDPELEDTPEGKWSCPTCEAEGPAD- 429

Query: 65  ASPPAEEVKEKEVLCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCSC 124
                E+  E +  C  CK  G + L C++C  +YH  CL  P++ ++P   W+CP+CSC
Sbjct: 430 -----EDDDEHQEFCRVCKDGG-EMLCCDSCPSAYHTWCLTPPLD-DIPDGDWRCPRCSC 482

Query: 125 PPLPGKL 131
           PP+P K+
Sbjct: 483 PPIPYKV 489

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158300661|ref|XP_320523.4| AGAP012009-PA [Anopheles gambiae str. PEST] gi|157013268|gb|EAA00692.4| AGAP012009-PA [Anopheles gambiae str. PEST]

 Score =  142 bits (358), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 69/127 (54%), Positives = 90/127 (70%), Gaps = 8/127 (6%)

Query: 10  EHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPETASPPA 69
           EHQDYCEVCQQGGEIILCDTCP+AYHL CLDPEL++TPEGKWSCP C ++GP +      
Sbjct: 411 EHQDYCEVCQQGGEIILCDTCPKAYHLVCLDPELEDTPEGKWSCPTCEAEGPAD------ 464

Query: 70  EEVKEKEVLCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCSCPPLPG 129
           E+  E +  C  CK  G + L C+ C  +YH  CL  P++ ++P   W+CP+CSCPPL  
Sbjct: 465 EDDDEHQEFCRVCKD-GGELLCCDNCPSAYHTFCLNPPLD-DIPDGEWRCPRCSCPPLAD 522

Query: 130 KLEDMAS 136
           K++ + +
Sbjct: 523 KVQKILT 529

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321479460|gb|EFX90416.1| hypothetical protein DAPPUDRAFT_232072 [Daphnia pulex]

 Score =  138 bits (348), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 69/129 (53%), Positives = 83/129 (64%), Gaps = 7/129 (5%)

Query: 8   QTEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDG-----PP 62
           +T+HQDYCEVCQQGGEIILCDTCPRAYHL C DPEL+E PEG+WSCP C  +G       
Sbjct: 411 ETDHQDYCEVCQQGGEIILCDTCPRAYHLVCFDPELEEAPEGRWSCPHCEGEGITAATVT 470

Query: 63  ETASPPAEEVKEKEVLCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKC 122
           E A   A +  E    C  CK  G + L C++C  +YH  CL  P+  E+P   WKCP+C
Sbjct: 471 EKAGRNAADDDEHSEFCRICKDGG-ELLCCDSCTSAYHTFCLNPPL-SEIPDGDWKCPRC 528

Query: 123 SCPPLPGKL 131
           S   LP K+
Sbjct: 529 SAKALPYKV 537

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|405972247|gb|EKC37026.1| Chromodomain-helicase-DNA-binding protein Mi-2-like protein [Crassostrea gigas]

 Score =  138 bits (347), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 70/124 (56%), Positives = 84/124 (67%), Gaps = 8/124 (6%)

Query: 8   QTEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPETASP 67
           +TEHQDYCEVCQQGGEIILCDTCPRAYHL C DPEL+E PEGKWSCP C  +G  E    
Sbjct: 321 ETEHQDYCEVCQQGGEIILCDTCPRAYHLVCFDPELEEPPEGKWSCPHCEGEGIKE---- 376

Query: 68  PAEEVKEKEVLCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCSCPPL 127
             +E  +    C  CK  G + L C+TC  +YH HCL  P++  +P   W CP+CSC PL
Sbjct: 377 --QEEDDHMEFCRVCKDGG-ELLCCDTCPSAYHVHCLNPPMK-MIPDGEWHCPRCSCEPL 432

Query: 128 PGKL 131
            G++
Sbjct: 433 KGRV 436

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|328716042|ref|XP_003245819.1| PREDICTED: chromodomain-helicase-DNA-binding protein Mi-2 homolog [Acyrthosiphon pisum]

 Score =  138 bits (347), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 72/127 (56%), Positives = 87/127 (68%), Gaps = 8/127 (6%)

Query: 8   QTEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPETASP 67
           QT+HQDYCEVCQQGGEIILCDTCPRAYHL CLDPEL++TPEGKWSCP C      E+   
Sbjct: 370 QTDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELEDTPEGKWSCPHC------ESEGG 423

Query: 68  PAEEVKEKEVLCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCSCPPL 127
             +E  E +  C  CK  G + L C++C  +YH  CL  PI  ++P   WKCP+CS  PL
Sbjct: 424 QEQEEDEHQEFCRVCKD-GGELLCCDSCPAAYHTFCLSPPIT-DVPDGDWKCPRCSAKPL 481

Query: 128 PGKLEDM 134
           PGK+  +
Sbjct: 482 PGKVSKI 488

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	145
FB|FBgn0262519	1982	Mi-2 [Drosophila melanogaster	0.841	0.061	0.570	2.2e-38
UNIPROTKB|J9NRN3	1195	CHD5 "Uncharacterized protein"	0.848	0.102	0.552	2.4e-37
UNIPROTKB|F2Z2R5	1225	CHD5 "Chromodomain-helicase-DN	0.848	0.100	0.552	2.5e-37
UNIPROTKB|F1SSZ2	1667	CHD5 "Uncharacterized protein"	0.848	0.073	0.552	4.2e-37
UNIPROTKB|F1RIM3	1723	CHD5 "Uncharacterized protein"	0.848	0.071	0.552	4.4e-37
UNIPROTKB|E2R1M3	1812	CHD5 "Uncharacterized protein"	0.848	0.067	0.552	4.8e-37
RGD|1582725	1940	Chd5 "chromodomain helicase DN	0.848	0.063	0.552	5.2e-37
UNIPROTKB|Q8TDI0	1954	CHD5 "Chromodomain-helicase-DN	0.848	0.062	0.552	5.3e-37
UNIPROTKB|F1NH78	1781	F1NH78 "Uncharacterized protei	0.848	0.069	0.555	5.9e-37
UNIPROTKB|H7C2H0	525	CHD3 "Chromodomain-helicase-DN	0.875	0.241	0.514	8e-37

FB|FBgn0262519 Mi-2 [Drosophila melanogaster (taxid:7227)]

 Score = 426 (155.0 bits), Expect = 2.2e-38, P = 2.2e-38
 Identities = 73/128 (57%), Positives = 89/128 (69%)

Query:     5 QDLQTEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPET 64
             +D + EHQDYCEVCQQGGEIILCDTCPRAYHL CL+PELDE PEGKWSCP C +DG    
Sbjct:   370 EDGEHEHQDYCEVCQQGGEIILCDTCPRAYHLVCLEPELDEPPEGKWSCPHCEADG---- 425

Query:    65 ASPPAEEVKEKEVLCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCSC 124
              +   E+  E +  C  CK  G + L C++C  +YH  CL  P++  +P   W+CP+CSC
Sbjct:   426 GAAEEEDDDEHQEFCRVCKD-GGELLCCDSCPSAYHTFCLNPPLD-TIPDGDWRCPRCSC 483

Query:   125 PPLPGKLE 132
             PPL GK E
Sbjct:   484 PPLTGKAE 491

GO:0016887 "ATPase activity" evidence=IDA;NAS

GO:0005634 "nucleus" evidence=ISS;IDA;NAS

GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS

GO:0004386 "helicase activity" evidence=ISS

GO:0016581 "NuRD complex" evidence=ISS;TAS

GO:0006333 "chromatin assembly or disassembly" evidence=ISS

GO:0003682 "chromatin binding" evidence=ISS;IDA

GO:0003678 "DNA helicase activity" evidence=ISS

GO:0005700 "polytene chromosome" evidence=IDA

GO:0042766 "nucleosome mobilization" evidence=IDA

GO:0003677 "DNA binding" evidence=IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0007517 "muscle organ development" evidence=IMP

GO:0048813 "dendrite morphogenesis" evidence=IMP

GO:0031491 "nucleosome binding" evidence=IDA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0070615 "nucleosome-dependent ATPase activity" evidence=IDA

UNIPROTKB|J9NRN3 CHD5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 413 (150.4 bits), Expect = 2.4e-37, P = 2.4e-37
 Identities = 74/134 (55%), Positives = 90/134 (67%)

Query:     8 QTEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDG---PPET 64
             +T+HQDYCEVCQQGGEIILCDTCPRAYHL CLDPEL++ PEGKWSCP C  +G    P+ 
Sbjct:   313 ETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELEKAPEGKWSCPHCEKEGIQWEPKD 372

Query:    65 ASPPAEE--VKEKE----VLCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWK 118
                  EE   +E+E      C  CK  G + L C+ C  SYH HCL  P+  E+P   W 
Sbjct:   373 DDDEEEEGGCEEEEDDHMEFCRVCKD-GGELLCCDACPSSYHLHCLNPPLP-EIPNGEWL 430

Query:   119 CPKCSCPPLPGKLE 132
             CP+C+CPPL GK++
Sbjct:   431 CPRCTCPPLKGKVQ 444

GO:0005634 "nucleus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|F2Z2R5 CHD5 "Chromodomain-helicase-DNA-binding protein 5" [Homo sapiens (taxid:9606)]

 Score = 413 (150.4 bits), Expect = 2.5e-37, P = 2.5e-37
 Identities = 74/134 (55%), Positives = 90/134 (67%)

Query:     8 QTEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDG---PPET 64
             +T+HQDYCEVCQQGGEIILCDTCPRAYHL CLDPEL++ PEGKWSCP C  +G    P+ 
Sbjct:   339 ETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELEKAPEGKWSCPHCEKEGIQWEPKD 398

Query:    65 ASPPAEE--VKEKE----VLCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWK 118
                  EE   +E+E      C  CK  G + L C+ C  SYH HCL  P+  E+P   W 
Sbjct:   399 DDDEEEEGGCEEEEDDHMEFCRVCKD-GGELLCCDACPSSYHLHCLNPPLP-EIPNGEWL 456

Query:   119 CPKCSCPPLPGKLE 132
             CP+C+CPPL GK++
Sbjct:   457 CPRCTCPPLKGKVQ 470

GO:0003677 "DNA binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1SSZ2 CHD5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 413 (150.4 bits), Expect = 4.2e-37, P = 4.2e-37
 Identities = 74/134 (55%), Positives = 90/134 (67%)

Query:     8 QTEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDG---PPET 64
             +T+HQDYCEVCQQGGEIILCDTCPRAYHL CLDPEL++ PEGKWSCP C  +G    P+ 
Sbjct:   255 ETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELEKAPEGKWSCPHCEKEGIQWEPKD 314

Query:    65 ASPPAEE--VKEKE----VLCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWK 118
                  EE   +E+E      C  CK  G + L C+ C  SYH HCL  P+  E+P   W 
Sbjct:   315 DDDEEEEGGCEEEEDDHMEFCRVCKD-GGELLCCDACPSSYHLHCLNPPLP-EIPNGEWL 372

Query:   119 CPKCSCPPLPGKLE 132
             CP+C+CPPL GK++
Sbjct:   373 CPRCTCPPLKGKVQ 386

GO:0005634 "nucleus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|F1RIM3 CHD5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 413 (150.4 bits), Expect = 4.4e-37, P = 4.4e-37
 Identities = 74/134 (55%), Positives = 90/134 (67%)

Query:     8 QTEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDG---PPET 64
             +T+HQDYCEVCQQGGEIILCDTCPRAYHL CLDPEL++ PEGKWSCP C  +G    P+ 
Sbjct:   271 ETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELEKAPEGKWSCPHCEKEGIQWEPKD 330

Query:    65 ASPPAEE--VKEKE----VLCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWK 118
                  EE   +E+E      C  CK  G + L C+ C  SYH HCL  P+  E+P   W 
Sbjct:   331 DDDEEEEGGCEEEEDDHMEFCRVCKD-GGELLCCDACPSSYHLHCLNPPLP-EIPNGEWL 388

Query:   119 CPKCSCPPLPGKLE 132
             CP+C+CPPL GK++
Sbjct:   389 CPRCTCPPLKGKVQ 402

GO:0005634 "nucleus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|E2R1M3 CHD5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 413 (150.4 bits), Expect = 4.8e-37, P = 4.8e-37
 Identities = 74/134 (55%), Positives = 90/134 (67%)

Query:     8 QTEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDG---PPET 64
             +T+HQDYCEVCQQGGEIILCDTCPRAYHL CLDPEL++ PEGKWSCP C  +G    P+ 
Sbjct:   202 ETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELEKAPEGKWSCPHCEKEGIQWEPKD 261

Query:    65 ASPPAEE--VKEKE----VLCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWK 118
                  EE   +E+E      C  CK  G + L C+ C  SYH HCL  P+  E+P   W 
Sbjct:   262 DDDEEEEGGCEEEEDDHMEFCRVCKD-GGELLCCDACPSSYHLHCLNPPLP-EIPNGEWL 319

Query:   119 CPKCSCPPLPGKLE 132
             CP+C+CPPL GK++
Sbjct:   320 CPRCTCPPLKGKVQ 333

GO:0005634 "nucleus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

RGD|1582725 Chd5 "chromodomain helicase DNA binding protein 5" [Rattus norvegicus (taxid:10116)]

 Score = 413 (150.4 bits), Expect = 5.2e-37, P = 5.2e-37
 Identities = 74/134 (55%), Positives = 90/134 (67%)

Query:     8 QTEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDG---PPET 64
             +T+HQDYCEVCQQGGEIILCDTCPRAYHL CLDPEL++ PEGKWSCP C  +G    P+ 
Sbjct:   337 ETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELEKAPEGKWSCPHCEKEGIQWEPKD 396

Query:    65 ASPPAEE--VKEKE----VLCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWK 118
                  EE   +E+E      C  CK  G + L C+ C  SYH HCL  P+  E+P   W 
Sbjct:   397 DDEEEEEGGCEEEEDDHMEFCRVCKD-GGELLCCDACPSSYHLHCLNPPLP-EIPNGEWL 454

Query:   119 CPKCSCPPLPGKLE 132
             CP+C+CPPL GK++
Sbjct:   455 CPRCTCPPLKGKVQ 468

GO:0003677 "DNA binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q8TDI0 CHD5 "Chromodomain-helicase-DNA-binding protein 5" [Homo sapiens (taxid:9606)]

 Score = 413 (150.4 bits), Expect = 5.3e-37, P = 5.3e-37
 Identities = 74/134 (55%), Positives = 90/134 (67%)

Query:     8 QTEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDG---PPET 64
             +T+HQDYCEVCQQGGEIILCDTCPRAYHL CLDPEL++ PEGKWSCP C  +G    P+ 
Sbjct:   339 ETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELEKAPEGKWSCPHCEKEGIQWEPKD 398

Query:    65 ASPPAEE--VKEKE----VLCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWK 118
                  EE   +E+E      C  CK  G + L C+ C  SYH HCL  P+  E+P   W 
Sbjct:   399 DDDEEEEGGCEEEEDDHMEFCRVCKD-GGELLCCDACPSSYHLHCLNPPLP-EIPNGEWL 456

Query:   119 CPKCSCPPLPGKLE 132
             CP+C+CPPL GK++
Sbjct:   457 CPRCTCPPLKGKVQ 470

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1NH78 F1NH78 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 412 (150.1 bits), Expect = 5.9e-37, P = 5.9e-37
 Identities = 75/135 (55%), Positives = 90/135 (66%)

Query:     8 QTEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDG---PPET 64
             +T+HQDYCEVCQQGGEIILCDTCPRAYHL CLDPEL++ PEGKWSCP C  +G    P+ 
Sbjct:   269 ETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELEKAPEGKWSCPHCEKEGIQWEPKE 328

Query:    65 ASPPAEEVKEKEV-----LCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKC 119
                  EE  E+E       C  CK  G + L C+TC  SYH HCL  P+  E+P   W C
Sbjct:   329 EEDEEEEGGEEEEDDHMEFCRVCKD-GGELLCCDTCPSSYHLHCLNPPLP-EIPNGEWLC 386

Query:   120 PKCS--CPPLPGKLE 132
             P+C+  CPPL GK++
Sbjct:   387 PRCTPQCPPLKGKVQ 401

GO:0003677 "DNA binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|H7C2H0 CHD3 "Chromodomain-helicase-DNA-binding protein 3" [Homo sapiens (taxid:9606)]

 Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
 Identities = 73/142 (51%), Positives = 88/142 (61%)

Query:     4 IQDLQTEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPE 63
             +   +T+HQDYCEVCQQGGEIILCDTCPRAYHL CLDPELD  PEGKWSCP C  +G   
Sbjct:   242 VDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELDRAPEGKWSCPHCEKEGVQW 301

Query:    64 TASPPAEEVKE-------KEV------LCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEG 110
              A    EE +E       KE        C  CK  G + L C+ C  SYH HCL  P+  
Sbjct:   302 EAKEEEEEYEEEGEEEGEKEEEDDHMEYCRVCKD-GGELLCCDACISSYHIHCLNPPLP- 359

Query:   111 ELPTSGWKCPKCSCPPLPGKLE 132
             ++P   W CP+C+CP L G+++
Sbjct:   360 DIPNGEWLCPRCTCPVLKGRVQ 381

GO:0003677 "DNA binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016818 "hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O97159	CHDM_DROME	3, ., 6, ., 4, ., 1, 2	0.5378	0.8689	0.0635	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	145
pfam00628	51	pfam00628, PHD, PHD-finger	4e-07
smart00249	47	smart00249, PHD, PHD zinc finger	5e-06
smart00249	47	smart00249, PHD, PHD zinc finger	4e-05
cd04718	148	cd04718, BAH_plant_2, BAH, or Bromo Adjacent Homol	4e-05
pfam00628	51	pfam00628, PHD, PHD-finger	0.002
COG5034	271	COG5034, TNG2, Chromatin remodeling protein, conta	0.003

>gnl|CDD|201356 pfam00628, PHD, PHD-finger

 Score = 44.0 bits (104), Expect = 4e-07
 Identities = 24/51 (47%), Positives = 30/51 (58%), Gaps = 5/51 (9%)

Query: 14 YCEVCQQ---GGEIILCDTCPRAYHLCCLDPELDET--PEGKWSCPRCVSD 59
          YC VC +    GE++LCD C R +HL CL P L+    PEG+W CP C   
Sbjct: 1  YCAVCGKVDDDGELLLCDGCDRWFHLACLGPPLEPEEIPEGEWYCPECKPK 51

PHD folds into an interleaved type of Zn-finger chelating 2 Zn ions in a similar manner to that of the RING and FYVE domains. Several PHD fingers have been identified as binding modules of methylated histone H3. Length = 51

>gnl|CDD|214584 smart00249, PHD, PHD zinc finger

 Score = 41.0 bits (96), Expect = 5e-06
 Identities = 24/47 (51%), Positives = 30/47 (63%), Gaps = 4/47 (8%)

Query: 14 YCEVCQQ---GGEIILCDTCPRAYHL-CCLDPELDETPEGKWSCPRC 56
          YC VC +   GGE++ CD C R YH  C   P L+E P+GKW CP+C
Sbjct: 1  YCSVCGKPDDGGELLQCDGCDRWYHQTCLGPPLLEEEPDGKWYCPKC 47

The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the RING finger and the FYVE finger. It is not yet known if PHD fingers have a common molecular function. Several reports suggest that it can function as a protein-protein interacton domain and it was recently demonstrated that the PHD finger of p300 can cooperate with the adjacent BROMO domain in nucleosome binding in vitro. Other reports suggesting that the PHD finger is a ubiquitin ligase have been refuted as these domains were RING fingers misidentified as PHD fingers. Length = 47

>gnl|CDD|214584 smart00249, PHD, PHD zinc finger

 Score = 38.7 bits (90), Expect = 4e-05
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 79  CAKCKSP--GDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKC 122
           C+ C  P  G + L C+ C+  YH  CL  P+  E P   W CPKC
Sbjct: 2   CSVCGKPDDGGELLQCDGCDRWYHQTCLGPPLLEEEPDGKWYCPKC 47

The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the RING finger and the FYVE finger. It is not yet known if PHD fingers have a common molecular function. Several reports suggest that it can function as a protein-protein interacton domain and it was recently demonstrated that the PHD finger of p300 can cooperate with the adjacent BROMO domain in nucleosome binding in vitro. Other reports suggesting that the PHD finger is a ubiquitin ligase have been refuted as these domains were RING fingers misidentified as PHD fingers. Length = 47

>gnl|CDD|240069 cd04718, BAH_plant_2, BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function

 Score = 41.0 bits (96), Expect = 4e-05
 Identities = 17/35 (48%), Positives = 21/35 (60%)

Query: 34 YHLCCLDPELDETPEGKWSCPRCVSDGPPETASPP 68
          +HLCCL P L E PEG W CP C  +   ++A P 
Sbjct: 2  FHLCCLRPPLKEVPEGDWICPFCEVEKSGQSAMPQ 36

BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions. Length = 148

>gnl|CDD|201356 pfam00628, PHD, PHD-finger

 Score = 34.0 bits (78), Expect = 0.002
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 3/49 (6%)

Query: 79  CAKCKS--PGDQFLLCETCNGSYHPHCL-PDPIEGELPTSGWKCPKCSC 124
           CA C       + LLC+ C+  +H  CL P     E+P   W CP+C  
Sbjct: 2   CAVCGKVDDDGELLLCDGCDRWFHLACLGPPLEPEEIPEGEWYCPECKP 50

PHD folds into an interleaved type of Zn-finger chelating 2 Zn ions in a similar manner to that of the RING and FYVE domains. Several PHD fingers have been identified as binding modules of methylated histone H3. Length = 51

>gnl|CDD|227367 COG5034, TNG2, Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]

 Score = 36.5 bits (84), Expect = 0.003
 Identities = 22/48 (45%), Positives = 28/48 (58%), Gaps = 8/48 (16%)

Query: 14  YCEVCQQG--GEIILCDT--CPRA-YHLCCLDPELDETPEGKWSCPRC 56
           YC  CQQ   G+++ CD   C R  +HL C+   L E P+GKW CP C
Sbjct: 223 YC-FCQQVSYGQMVACDNANCKREWFHLECVG--LKEPPKGKWYCPEC 267

Length = 271

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	145
KOG1244|consensus	336		99.62
KOG0383|consensus	696		99.48
KOG1512|consensus	381		99.27
KOG4299|consensus	613		99.17
KOG4299|consensus	613		99.16
KOG4443|consensus	694		99.12
KOG1244|consensus	336		99.0
PF15446	175	zf-PHD-like: PHD/FYVE-zinc-finger like domain	98.97
KOG0383|consensus	696		98.91
PF00628	51	PHD: PHD-finger; InterPro: IPR019787 Zinc finger (	98.88
COG5141	669	PHD zinc finger-containing protein [General functi	98.78
smart00249	47	PHD PHD zinc finger. The plant homeodomain (PHD) f	98.78
PF00628	51	PHD: PHD-finger; InterPro: IPR019787 Zinc finger (	98.77
KOG4323|consensus	464		98.77
smart00249	47	PHD PHD zinc finger. The plant homeodomain (PHD) f	98.74
KOG0955|consensus	1051		98.73
KOG0956|consensus	900		98.69
KOG0825|consensus	1134		98.61
KOG1473|consensus	1414		98.5
KOG0825|consensus	1134		98.44
KOG1973|consensus	274		98.42
KOG1512|consensus	381		98.32
COG5034	271	TNG2 Chromatin remodeling protein, contains PhD zi	98.26
KOG4443|consensus	694		98.26
cd04718	148	BAH_plant_2 BAH, or Bromo Adjacent Homology domain	98.2
KOG0954|consensus	893		98.15
KOG1973|consensus	274		98.03
COG5034	271	TNG2 Chromatin remodeling protein, contains PhD zi	98.01
KOG0957|consensus	707		97.83
PF13831	36	PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.	97.8
KOG0957|consensus	707		97.76
KOG1245|consensus	1404		97.31
KOG1245|consensus	1404		97.24
KOG4323|consensus	464		97.01
KOG0955|consensus	1051		96.95
PF13832	110	zf-HC5HC2H_2: PHD-zinc-finger like domain	96.5
KOG0954|consensus	893		96.43
PF13831	36	PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.	95.85
KOG1473|consensus	1414		95.48
KOG0956|consensus	900		95.39
COG5141	669	PHD zinc finger-containing protein [General functi	95.13
PF15446	175	zf-PHD-like: PHD/FYVE-zinc-finger like domain	94.68
PF14446	54	Prok-RING_1: Prokaryotic RING finger family 1	94.61
PF13771	90	zf-HC5HC2H: PHD-like zinc-binding domain	92.77
PF13901	202	DUF4206: Domain of unknown function (DUF4206)	92.65
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	92.62
PF14446	54	Prok-RING_1: Prokaryotic RING finger family 1	92.39
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	91.74
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	91.28
PF13771	90	zf-HC5HC2H: PHD-like zinc-binding domain	90.51
PF13832	110	zf-HC5HC2H_2: PHD-zinc-finger like domain	90.43
KOG4628|consensus	348		86.5
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	83.06
KOG1246|consensus	904		82.82
KOG1081|consensus	463		81.13
PF07227	446	DUF1423: Protein of unknown function (DUF1423); In	80.26
PF13901	202	DUF4206: Domain of unknown function (DUF4206)	80.09

>KOG1244|consensus

Probab=99.62  E-value=5.5e-17  Score=123.84  Aligned_cols=93  Identities=32%  Similarity=0.887  Sum_probs=80.1

Q ss_pred             cccccccccccc----------CceEecCCCCCcccccccCCCCCC---CCCCCeEeCccccCCCCCCCCCCCccccccc
Q psy14606         10 EHQDYCEVCQQG----------GEIILCDTCPRAYHLCCLDPELDE---TPEGKWSCPRCVSDGPPETASPPAEEVKEKE   76 (145)
Q Consensus        10 ~~~~~C~~C~~~----------g~l~~Cd~C~~~~H~~Cl~p~~~~---~p~~~W~C~~C~~~~~~~~~~~~~~~~~~~~   76 (145)
                      ....+|..|..+          .+||.|..|+|+=|.+||+...+.   +....|+|..|+                   
T Consensus       222 ~Pn~YCDFclgdsr~nkkt~~peelvscsdcgrsghpsclqft~nm~~avk~yrwqcieck-------------------  282 (336)
T KOG1244|consen  222 QPNPYCDFCLGDSRENKKTGMPEELVSCSDCGRSGHPSCLQFTANMIAAVKTYRWQCIECK-------------------  282 (336)
T ss_pred             cCCcccceeccccccccccCCchhhcchhhcCCCCCcchhhhhHHHHHHHHhheeeeeecc-------------------
Confidence            445689999754          269999999999999999954332   455799999999                   


Q ss_pred             ccccccCCCC--CCeecCCCCCCCCCCCCCCCCCCCCCCCCceeCCCCC
Q psy14606         77 VLCAKCKSPG--DQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCS  123 (145)
Q Consensus        77 ~~C~vC~~~g--~~ll~C~~C~~~yH~~Cl~~~~~~~~p~~~w~C~~C~  123 (145)
                       +|++|+...  +.||+||.|++.||.+||.|||. +.|+|.|-|..|.
T Consensus       283 -~csicgtsenddqllfcddcdrgyhmyclsppm~-eppegswsc~KOG  329 (336)
T KOG1244|consen  283 -YCSICGTSENDDQLLFCDDCDRGYHMYCLSPPMV-EPPEGSWSCHLCL  329 (336)
T ss_pred             -eeccccCcCCCceeEeecccCCceeeEecCCCcC-CCCCCchhHHHHH
Confidence             899999864  78999999999999999999999 9999999999986

>KOG0383|consensus

Probab=99.48  E-value=1.7e-14  Score=123.35  Aligned_cols=110  Identities=38%  Similarity=0.828  Sum_probs=96.6

Q ss_pred             CCCCcccccccCCCCCCCCCCCeEeCccccCCCCCCCCCCCcccccccccccccCCCCCCeecCCCCCCCCCCCCCCCCC
Q psy14606         29 TCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPETASPPAEEVKEKEVLCAKCKSPGDQFLLCETCNGSYHPHCLPDPI  108 (145)
Q Consensus        29 ~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~~~~~~~~~~~~~~~~~~~C~vC~~~g~~ll~C~~C~~~yH~~Cl~~~~  108 (145)
                      .|+|+||..|+.|.+..-++++|.|+.|.+.+.++.+.... .....+..|.+|+.+| ++|.|+.|+.+||.+|+++++
T Consensus         1 ~~~r~~~~~~~~p~~~~~~~~~~k~~~~e~~~~~~~~~~~~-~~~~~~e~c~ic~~~g-~~l~c~tC~~s~h~~cl~~pl   78 (696)
T KOG0383|consen    1 TCPRAYHRVCLDPKLKEEPEMDPKCPGCESSSAQVEAKDDD-WDDAEQEACRICADGG-ELLWCDTCPASFHASCLGPPL   78 (696)
T ss_pred             CCCcccCcCCCCcccccCCcCCccCcchhhcccccccccCC-cchhhhhhhhhhcCCC-cEEEeccccHHHHHHccCCCC
Confidence            48999999999999998889999999999887776543222 3455677899999999 999999999999999999999


Q ss_pred             CCCCCCCceeCCCCCCCCCCCchhhcccccccC
Q psy14606        109 EGELPTSGWKCPKCSCPPLPGKLEDMASLLRLP  141 (145)
Q Consensus       109 ~~~~p~~~w~C~~C~~~~~~~~~~~~~~~~~~~  141 (145)
                      . ..|+++|+|+.|.++....++.+++.|+|..
T Consensus        79 ~-~~p~~~~~c~Rc~~p~~~~k~~~il~~~~~~  110 (696)
T KOG0383|consen   79 T-PQPNGEFICPRCFCPKNAGKIEKILGWRWKP  110 (696)
T ss_pred             C-cCCccceeeeeeccCCCcccccccceeEecC
Confidence            9 9999899999999999999999999999864

>KOG1512|consensus

Probab=99.27  E-value=1.4e-12  Score=100.62  Aligned_cols=88  Identities=24%  Similarity=0.655  Sum_probs=74.0

Q ss_pred             cccccccccccc---------CceEecCCCCCcccccccCCCCC---CCCCCCeEeCccccCCCCCCCCCCCcccccccc
Q psy14606         10 EHQDYCEVCQQG---------GEIILCDTCPRAYHLCCLDPELD---ETPEGKWSCPRCVSDGPPETASPPAEEVKEKEV   77 (145)
Q Consensus        10 ~~~~~C~~C~~~---------g~l~~Cd~C~~~~H~~Cl~p~~~---~~p~~~W~C~~C~~~~~~~~~~~~~~~~~~~~~   77 (145)
                      ....+|.+|-++         ..+|.|..|..++|.+|+.-+..   .+....|.|..|+                    
T Consensus       256 ~~~~~~~~~~~~~~~~~~~r~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~--------------------  315 (381)
T KOG1512|consen  256 QRRNERKHFWDIQTNIIQSRRNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFWKCSSCE--------------------  315 (381)
T ss_pred             cchhhhhhhhcchhhhhhhhhccceeecccccCCCCcchhcCHHHHhHHhhcchhhcccH--------------------
Confidence            344678899764         24999999999999999984332   2345799999999                    


Q ss_pred             cccccCCCC--CCeecCCCCCCCCCCCCCCCCCCCCCCCCceeCC
Q psy14606         78 LCAKCKSPG--DQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCP  120 (145)
Q Consensus        78 ~C~vC~~~g--~~ll~C~~C~~~yH~~Cl~~~~~~~~p~~~w~C~  120 (145)
                      .|.+|+.+-  +++++||.|+++||..|++  +. .+|.|.|+|.
T Consensus       316 lC~IC~~P~~E~E~~FCD~CDRG~HT~CVG--L~-~lP~G~WICD  357 (381)
T KOG1512|consen  316 LCRICLGPVIESEHLFCDVCDRGPHTLCVG--LQ-DLPRGEWICD  357 (381)
T ss_pred             hhhccCCcccchheeccccccCCCCccccc--cc-cccCccchhh
Confidence            899999975  6899999999999999999  56 8999999998

>KOG4299|consensus

Probab=99.17  E-value=2.1e-11  Score=102.26  Aligned_cols=110  Identities=34%  Similarity=0.848  Sum_probs=78.8

Q ss_pred             ccccccccccCce---EecCCCCCcccccccCCCC--CCCCCCCeEeCccccCCCCCC--C----C--------------
Q psy14606         12 QDYCEVCQQGGEI---ILCDTCPRAYHLCCLDPEL--DETPEGKWSCPRCVSDGPPET--A----S--------------   66 (145)
Q Consensus        12 ~~~C~~C~~~g~l---~~Cd~C~~~~H~~Cl~p~~--~~~p~~~W~C~~C~~~~~~~~--~----~--------------   66 (145)
                      +++|..|.+.|..   ++||+|+++||+.||.||+  +.+|.|.|+|+.|......-.  .    .              
T Consensus       253 ~~fCsaCn~~~~F~~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~k~~in~~~~t~~~~~~~~~i~t~~~~~I  332 (613)
T KOG4299|consen  253 EDFCSACNGSGLFNDIICCDGCPRSFHQTCLEPPLEPENIPPGSWFCPECKIKSVINPKMETLSNRGTVVDIFTQFVSKI  332 (613)
T ss_pred             HHHHHHhCCccccccceeecCCchHHHHhhcCCCCCcccCCCCccccCCCeeeeecccchhhhhhccchHHHHHHHHHhh
Confidence            4599999999876   9999999999999999995  568999999999975421000  0    0              


Q ss_pred             ---------------------------------------------CCC---cc--cccccccccccCCCC---CCeecCC
Q psy14606         67 ---------------------------------------------PPA---EE--VKEKEVLCAKCKSPG---DQFLLCE   93 (145)
Q Consensus        67 ---------------------------------------------~~~---~~--~~~~~~~C~vC~~~g---~~ll~C~   93 (145)
                                                                   +.+   .+  .+....+|+.|....   ..++.|+
T Consensus       333 Ds~np~q~~lPe~i~~~~~~v~~g~~~~~sd~~~~~pl~~~~~~~d~e~~e~g~~ssg~~~~~~~c~~~~~~s~~vl~c~  412 (613)
T KOG4299|consen  333 DSHNPIQKILPENISESFGGVSRGDDGQYSDTQDEKPLDPPALILDGENDENGIDSSGTELLCGRCSKTQTESVVVLDCQ  412 (613)
T ss_pred             hccchhhhhCCHHHHhhccccccCCCCccccccCCcCCChhhhcccccCCccCCCccCcchhhcccCcchhhhhhhhccc
Confidence                                                         000   00  112344788888753   4578999


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCC--ceeCCCCC
Q psy14606         94 TCNGSYHPHCLPDPIEGELPTS--GWKCPKCS  123 (145)
Q Consensus        94 ~C~~~yH~~Cl~~~~~~~~p~~--~w~C~~C~  123 (145)
                      .|+..+|..|+. +.. ..|..  .|.|+...
T Consensus       413 ye~s~~h~dc~~-~~~-~~ps~ss~~k~p~~s  442 (613)
T KOG4299|consen  413 YEQSPEHPDCKD-DSK-ALPSLSSKWKCPRVS  442 (613)
T ss_pred             cccCCCCccccc-hhh-hCCCCcccccCCCCC
Confidence            999999999994 434 44443  68999874

>KOG4299|consensus

Probab=99.16  E-value=1.7e-11  Score=102.90  Aligned_cols=50  Identities=32%  Similarity=1.014  Sum_probs=42.8

Q ss_pred             ccccccCCCC--CCeecCCCCCCCCCCCCCCCCCCC-CCCCCceeCCCCCCCC
Q psy14606         77 VLCAKCKSPG--DQFLLCETCNGSYHPHCLPDPIEG-ELPTSGWKCPKCSCPP  126 (145)
Q Consensus        77 ~~C~vC~~~g--~~ll~C~~C~~~yH~~Cl~~~~~~-~~p~~~w~C~~C~~~~  126 (145)
                      .||+.|+..|  ..+|+||.|++.||+.||.||+.. ++|.+.|+|+.|..+.
T Consensus       254 ~fCsaCn~~~~F~~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~k~  306 (613)
T KOG4299|consen  254 DFCSACNGSGLFNDIICCDGCPRSFHQTCLEPPLEPENIPPGSWFCPECKIKS  306 (613)
T ss_pred             HHHHHhCCccccccceeecCCchHHHHhhcCCCCCcccCCCCccccCCCeeee
Confidence            3899999988  345999999999999999999432 8899999999996653

>KOG4443|consensus

Probab=99.12  E-value=1.3e-11  Score=103.99  Aligned_cols=92  Identities=34%  Similarity=0.944  Sum_probs=78.5

Q ss_pred             cccccccccccc-----CceEecCCCCCcccccccCCCCCCC-CCCCeEeCccccCCCCCCCCCCCcccccccccccccC
Q psy14606         10 EHQDYCEVCQQG-----GEIILCDTCPRAYHLCCLDPELDET-PEGKWSCPRCVSDGPPETASPPAEEVKEKEVLCAKCK   83 (145)
Q Consensus        10 ~~~~~C~~C~~~-----g~l~~Cd~C~~~~H~~Cl~p~~~~~-p~~~W~C~~C~~~~~~~~~~~~~~~~~~~~~~C~vC~   83 (145)
                      ....+|.+|+..     |.|+.|..|..-||.+|+...+... -.+.|.|+.|+                    .|..|+
T Consensus        16 ~~~~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~cr--------------------vCe~c~   75 (694)
T KOG4443|consen   16 IVCLMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCR--------------------VCEACG   75 (694)
T ss_pred             hhhhhhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCce--------------------eeeecc
Confidence            455678888765     4599999999999999998655433 24569999999                    899999


Q ss_pred             CCC--CCeecCCCCCCCCCCCCCCCCCCCCCCCCceeCCCC
Q psy14606         84 SPG--DQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKC  122 (145)
Q Consensus        84 ~~g--~~ll~C~~C~~~yH~~Cl~~~~~~~~p~~~w~C~~C  122 (145)
                      ..|  ..+++|+.|+-+||.+|..|+.+ .++.+.|+|+.|
T Consensus        76 ~~gD~~kf~~Ck~cDvsyh~yc~~P~~~-~v~sg~~~ckk~  115 (694)
T KOG4443|consen   76 TTGDPKKFLLCKRCDVSYHCYCQKPPND-KVPSGPWLCKKC  115 (694)
T ss_pred             ccCCcccccccccccccccccccCCccc-cccCcccccHHH
Confidence            766  57899999999999999999999 999999999999

>KOG1244|consensus

Probab=99.00  E-value=1.2e-10  Score=89.31  Aligned_cols=53  Identities=40%  Similarity=1.074  Sum_probs=47.2

Q ss_pred             cccccccccccccccc---CceEecCCCCCcccccccCCCCCCCCCCCeEeCcccc
Q psy14606          6 DLQTEHQDYCEVCQQG---GEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVS   58 (145)
Q Consensus         6 ~~~~~~~~~C~~C~~~---g~l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~   58 (145)
                      ++..++...|.||+-.   ++||+||.|+|+||++||.|++...|+|.|.|..|..
T Consensus       275 rwqcieck~csicgtsenddqllfcddcdrgyhmyclsppm~eppegswsc~KOG~  330 (336)
T KOG1244|consen  275 RWQCIECKYCSICGTSENDDQLLFCDDCDRGYHMYCLSPPMVEPPEGSWSCHLCLE  330 (336)
T ss_pred             eeeeeecceeccccCcCCCceeEeecccCCceeeEecCCCcCCCCCCchhHHHHHH
Confidence            4667788899999864   5799999999999999999999999999999998863

>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain

Probab=98.97  E-value=1.1e-09  Score=78.78  Aligned_cols=89  Identities=27%  Similarity=0.799  Sum_probs=62.4

Q ss_pred             ccccccc------cCceEecCCCCCcccccccCCCCCC------CCCCCe--EeCccccCCCCCCCCCCCcccccccccc
Q psy14606         14 YCEVCQQ------GGEIILCDTCPRAYHLCCLDPELDE------TPEGKW--SCPRCVSDGPPETASPPAEEVKEKEVLC   79 (145)
Q Consensus        14 ~C~~C~~------~g~l~~Cd~C~~~~H~~Cl~p~~~~------~p~~~W--~C~~C~~~~~~~~~~~~~~~~~~~~~~C   79 (145)
                      .|.+|..      .|.||+|.+|..+||..||++....      +..+.|  +|.+|+-....      ..........|
T Consensus         1 ~C~~C~~~g~~~~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig~~~k------KD~~aP~~~~C   74 (175)
T PF15446_consen    1 TCDTCGYEGDDRNKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIGIAHK------KDPRAPHHGMC   74 (175)
T ss_pred             CcccccCCCCCccCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEechhhcChhhc------ccCCCCCCCcc
Confidence            4778853      3679999999999999999987642      334444  88899743322      11233344456


Q ss_pred             cccCCCC----------------------------------------CCeecCCCCCCCCCCCCCCCCC
Q psy14606         80 AKCKSPG----------------------------------------DQFLLCETCNGSYHPHCLPDPI  108 (145)
Q Consensus        80 ~vC~~~g----------------------------------------~~ll~C~~C~~~yH~~Cl~~~~  108 (145)
                      ..|+..|                                        ..|+.|..|.++||+..|+++-
T Consensus        75 ~~C~~~G~~c~pfr~r~T~kQEe~~ReeNgG~DPit~Vd~~lvnN~~nVLFRC~~C~RawH~~HLP~~~  143 (175)
T PF15446_consen   75 QQCKKPGPSCKPFRPRKTPKQEEKLREENGGVDPITPVDPELVNNPDNVLFRCTSCHRAWHFEHLPPPS  143 (175)
T ss_pred             cccCCCCCCCcccCCCCCcHHHHHHHHHcCCCCCCccCCHHHccChhheEEecCCccceeehhhCCCCc
Confidence            6666543                                        1488999999999999999863

>KOG0383|consensus

Probab=98.91  E-value=7.4e-10  Score=95.28  Aligned_cols=115  Identities=21%  Similarity=0.483  Sum_probs=87.4

Q ss_pred             ccccccccccccccCceEecCCCCCcccccccCCCCCCCCCCCeEeCccccCCCC----------CCC-----C------
Q psy14606          8 QTEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPP----------ETA-----S------   66 (145)
Q Consensus         8 ~~~~~~~C~~C~~~g~l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~~~----------~~~-----~------   66 (145)
                      ...+...|.+|+++|++++|+.|+.+||.+|+++++...|.++|.|++|......          |.+     .      
T Consensus        43 ~~~~~e~c~ic~~~g~~l~c~tC~~s~h~~cl~~pl~~~p~~~~~c~Rc~~p~~~~k~~~il~~~~~~~~~~~~~~~~~~  122 (696)
T KOG0383|consen   43 DDAEQEACRICADGGELLWCDTCPASFHASCLGPPLTPQPNGEFICPRCFCPKNAGKIEKILGWRWKPTPKPREGNQGVI  122 (696)
T ss_pred             chhhhhhhhhhcCCCcEEEeccccHHHHHHccCCCCCcCCccceeeeeeccCCCcccccccceeEecCCCCccccCcCcc
Confidence            3456678999999999999999999999999999999999988999999433210          100     0      


Q ss_pred             ---------------------------------------------CCCcccccccccccccCCCCCCeecCCCCCCCCCC
Q psy14606         67 ---------------------------------------------PPAEEVKEKEVLCAKCKSPGDQFLLCETCNGSYHP  101 (145)
Q Consensus        67 ---------------------------------------------~~~~~~~~~~~~C~vC~~~g~~ll~C~~C~~~yH~  101 (145)
                                                                   ...........-+.++...+ .++.++.+++.||.
T Consensus       123 ~~~~~~~~~~re~~vk~qg~s~~~c~~~~e~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-k~~~~a~~~~r~~~  201 (696)
T KOG0383|consen  123 SPRRSNGIVEREFFVKWQGLSYWHCSWKSELLLQNPLNTLPVELQRKHDTDQKPEAEIGVTRDKG-KLVPYADLEERFLL  201 (696)
T ss_pred             CCcccccchhhhcccccccCCccchhHHHHHHhhhhcccchHhhhhhhhcccCccccccccccCc-cccccccchhhhhh
Confidence                                                         00000112223455677777 78888889999999


Q ss_pred             CCCCCCCCCCCCCCceeCCCCCC
Q psy14606        102 HCLPDPIEGELPTSGWKCPKCSC  124 (145)
Q Consensus       102 ~Cl~~~~~~~~p~~~w~C~~C~~  124 (145)
                      +++.|... .++...|.+..+..
T Consensus       202 ~~iKpe~~-~i~rii~~~~s~~~  223 (696)
T KOG0383|consen  202 YGIKPEWM-PIARIINRRSSQKG  223 (696)
T ss_pred             eecccccc-ccchhhhhhccccc
Confidence            99999888 88888999998853

>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.88  E-value=3.1e-10  Score=66.75  Aligned_cols=45  Identities=49%  Similarity=1.228  Sum_probs=37.7

Q ss_pred             ccccccc---cCceEecCCCCCcccccccCCCCC--CCCCCCeEeCcccc
Q psy14606         14 YCEVCQQ---GGEIILCDTCPRAYHLCCLDPELD--ETPEGKWSCPRCVS   58 (145)
Q Consensus        14 ~C~~C~~---~g~l~~Cd~C~~~~H~~Cl~p~~~--~~p~~~W~C~~C~~   58 (145)
                      +|.+|++   +++||.|+.|++.||..|++++..  ..+.+.|+|+.|+.
T Consensus         1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~   50 (51)
T PF00628_consen    1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP   50 (51)
T ss_dssp             EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred             eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence            5788887   568999999999999999998877  34456999999863

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....

>COG5141 PHD zinc finger-containing protein [General function prediction only]

Probab=98.78  E-value=1.3e-09  Score=89.55  Aligned_cols=99  Identities=27%  Similarity=0.662  Sum_probs=73.1

Q ss_pred             cccccccccccccccC-----ceEecCCCCCcccccccCCCCCCCCCCCeEeCccccCCCCCC----------C------
Q psy14606          7 LQTEHQDYCEVCQQGG-----EIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPET----------A------   65 (145)
Q Consensus         7 ~~~~~~~~C~~C~~~g-----~l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~~~~~----------~------   65 (145)
                      .++.-++.|.+|.+..     -+++||+|+.+.|+.|++  +.-+|+|.|+|..|.....+..          +      
T Consensus       188 ~~d~~d~~C~~c~~t~~eN~naiVfCdgC~i~VHq~CYG--I~f~peG~WlCrkCi~~~~~i~~C~fCps~dGaFkqT~d  265 (669)
T COG5141         188 PSDEFDDICTKCTSTHNENSNAIVFCDGCEICVHQSCYG--IQFLPEGFWLCRKCIYGEYQIRCCSFCPSSDGAFKQTSD  265 (669)
T ss_pred             CchhhhhhhHhccccccCCcceEEEecCcchhhhhhccc--ceecCcchhhhhhhcccccceeEEEeccCCCCceeeccC
Confidence            3445678899998753     399999999999999999  7789999999999976543211          0      


Q ss_pred             C----------------------CCCcc-----cccccccccccCCCCCCeecCC--CCCCCCCCCCCCCC
Q psy14606         66 S----------------------PPAEE-----VKEKEVLCAKCKSPGDQFLLCE--TCNGSYHPHCLPDP  107 (145)
Q Consensus        66 ~----------------------~~~~~-----~~~~~~~C~vC~~~g~~ll~C~--~C~~~yH~~Cl~~~  107 (145)
                      +                      +..++     .+.--..|.+|+..++.-|+|.  .|-++||..|....
T Consensus       266 grW~H~iCA~~~pelsF~~l~~~dpI~~i~sVs~srwkl~C~iCk~~~GtcIqCs~~nC~~aYHVtCArra  336 (669)
T COG5141         266 GRWGHVICAMFNPELSFGHLLSKDPIDNIASVSSSRWKLGCLICKEFGGTCIQCSYFNCTRAYHVTCARRA  336 (669)
T ss_pred             CchHhHhHHHhcchhccccccccchhhhhcccchhhHhheeeEEcccCcceeeecccchhhhhhhhhhhhc
Confidence            0                      01111     1111236999999766899998  79999999998765

>smart00249 PHD PHD zinc finger

Probab=98.78  E-value=9.7e-09  Score=58.49  Aligned_cols=44  Identities=43%  Similarity=1.144  Sum_probs=35.6

Q ss_pred             ccccCCC--CCCeecCCCCCCCCCCCCCCCCCCCCCCCCceeCCCC
Q psy14606         79 CAKCKSP--GDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKC  122 (145)
Q Consensus        79 C~vC~~~--g~~ll~C~~C~~~yH~~Cl~~~~~~~~p~~~w~C~~C  122 (145)
                      |.+|+..  ++.+|.|+.|+++||..|++++.....+...|+|+.|
T Consensus         2 C~~C~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~~C~~C   47 (47)
T smart00249        2 CSVCGKPDDGGELLQCDGCDRWYHQTCLGPPLLEEEPDGKWYCPKC   47 (47)
T ss_pred             cccCCCcCCCCCEEECCCCCchhhhhhCCCcccCCCCCCCEECcCC
Confidence            6778774  3589999999999999999986443456779999986

The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the

>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.77  E-value=5.1e-10  Score=65.86  Aligned_cols=46  Identities=33%  Similarity=1.032  Sum_probs=35.8

Q ss_pred             cccccCCCC--CCeecCCCCCCCCCCCCCCCCCCC-CCCCCceeCCCCC
Q psy14606         78 LCAKCKSPG--DQFLLCETCNGSYHPHCLPDPIEG-ELPTSGWKCPKCS  123 (145)
Q Consensus        78 ~C~vC~~~g--~~ll~C~~C~~~yH~~Cl~~~~~~-~~p~~~w~C~~C~  123 (145)
                      +|.+|+..+  +.||.|+.|.++||..|++++... ..+...|+|+.|+
T Consensus         1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~   49 (51)
T PF00628_consen    1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR   49 (51)
T ss_dssp             EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred             eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence            477787743  589999999999999999998541 2234599999885

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....

>KOG4323|consensus

Probab=98.77  E-value=4e-09  Score=86.77  Aligned_cols=113  Identities=21%  Similarity=0.444  Sum_probs=74.8

Q ss_pred             ccccccccccc-----CceEecCCCCCcccccccCCCCCCCCCCCeEeCccccCCCCCCC----CC-------------C
Q psy14606         11 HQDYCEVCQQG-----GEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPETA----SP-------------P   68 (145)
Q Consensus        11 ~~~~C~~C~~~-----g~l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~~~~~~----~~-------------~   68 (145)
                      .+..|.+|...     .+++.|+.|.++||..|..|....  .+.|.+..|+........    .+             .
T Consensus        82 ~e~~~nv~~s~~~~p~~e~~~~~r~~~~~~q~~~i~~~~~--~~~~~~~~c~~~~~~~~g~a~K~g~~a~~~l~y~~~~l  159 (464)
T KOG4323|consen   82 SELNPNVLTSETVLPENEKVICGRCKSGYHQGCNIPRFPS--LDIGESTECVFPIFSQEGGALKKGRLARPSLPYPEASL  159 (464)
T ss_pred             cccCCcccccccccCchhhhhhhhhccCcccccCccCcCc--CCccccccccccccccccccccccccccccccCccccc
Confidence            33457777653     368899999999999999865432  356667767765321110    00             0


Q ss_pred             C-cccccccccccccCCCC----CCeecCCCCCCCCCCCCCCCCCCC---CCCCCceeCCCCCCC
Q psy14606         69 A-EEVKEKEVLCAKCKSPG----DQFLLCETCNGSYHPHCLPDPIEG---ELPTSGWKCPKCSCP  125 (145)
Q Consensus        69 ~-~~~~~~~~~C~vC~~~g----~~ll~C~~C~~~yH~~Cl~~~~~~---~~p~~~w~C~~C~~~  125 (145)
                      + .........|.||..++    ..||+|+.|..|||..|+.|+.+.   ..+.+.|+|..|..+
T Consensus       160 ~wD~~~~~n~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~  224 (464)
T KOG4323|consen  160 DWDSGHKVNLQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRG  224 (464)
T ss_pred             ccCccccccceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccc
Confidence            0 00011122377777543    689999999999999999997442   457789999999743

>smart00249 PHD PHD zinc finger

Probab=98.74  E-value=9.6e-09  Score=58.51  Aligned_cols=43  Identities=58%  Similarity=1.442  Sum_probs=36.7

Q ss_pred             ccccccc---cCceEecCCCCCcccccccCCCCC-CCCCCCeEeCcc
Q psy14606         14 YCEVCQQ---GGEIILCDTCPRAYHLCCLDPELD-ETPEGKWSCPRC   56 (145)
Q Consensus        14 ~C~~C~~---~g~l~~Cd~C~~~~H~~Cl~p~~~-~~p~~~W~C~~C   56 (145)
                      +|.+|++   ++.+|.|+.|++.||..|++++.. ..+...|+|+.|
T Consensus         1 ~C~~C~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~~C~~C   47 (47)
T smart00249        1 YCSVCGKPDDGGELLQCDGCDRWYHQTCLGPPLLEEEPDGKWYCPKC   47 (47)
T ss_pred             CcccCCCcCCCCCEEECCCCCchhhhhhCCCcccCCCCCCCEECcCC
Confidence            4778876   678999999999999999998776 567789999876

The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the

>KOG0955|consensus

Probab=98.73  E-value=8.8e-09  Score=91.91  Aligned_cols=116  Identities=25%  Similarity=0.590  Sum_probs=82.2

Q ss_pred             cccccccccccccc-----CceEecCCCCCcccccccCCCCCCCCCCCeEeCccccCCCCCC-------CC---------
Q psy14606          8 QTEHQDYCEVCQQG-----GEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPET-------AS---------   66 (145)
Q Consensus         8 ~~~~~~~C~~C~~~-----g~l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~~~~~-------~~---------   66 (145)
                      ....|++|.||.++     ..+|+||.|+.++|+.|++  +..+|+|.|+|..|........       +.         
T Consensus       215 ~~~~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cyg--i~~ipeg~WlCr~Cl~s~~~~v~c~~cp~~~gAFkqt~dg  292 (1051)
T KOG0955|consen  215 LLEEDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYG--IPFIPEGQWLCRRCLQSPQRPVRCLLCPSKGGAFKQTDDG  292 (1051)
T ss_pred             ccCCCccceeecccccCCCceEEEcCCCcchhhhhccC--CCCCCCCcEeehhhccCcCcccceEeccCCCCcceeccCC
Confidence            34678899999986     3599999999999999999  6788999999999976543210       00         


Q ss_pred             --------------C------CCc---c----cccccccccccCCCC-CCeecCC--CCCCCCCCCCCCCC---CCC-CC
Q psy14606         67 --------------P------PAE---E----VKEKEVLCAKCKSPG-DQFLLCE--TCNGSYHPHCLPDP---IEG-EL  112 (145)
Q Consensus        67 --------------~------~~~---~----~~~~~~~C~vC~~~g-~~ll~C~--~C~~~yH~~Cl~~~---~~~-~~  112 (145)
                                    +      ++.   .    .......|++|+..+ ..-++|.  .|-.|||.+|-...   |.. .+
T Consensus       293 rw~Hv~caiwipev~F~nt~~~E~I~~i~~i~~aRwkL~cy~cK~~~~gaciqcs~~~c~~a~hvtca~~agl~m~~~~~  372 (1051)
T KOG0955|consen  293 RWAHVVCAIWIPEVSFANTVFLEPIDSIENIPPARWKLTCYICKQKGLGACIQCSKANCYTAFHVTCARRAGLYMKSNTV  372 (1051)
T ss_pred             ceeeeehhhcccccccccchhhccccchhcCcHhhhhceeeeeccCCCCcceecchhhhhhhhhhhhHhhcCceEeeccc
Confidence                          0      000   0    111245799999876 5789997  79999999997654   110 11


Q ss_pred             C-----------CCceeCCCCCCC
Q psy14606        113 P-----------TSGWKCPKCSCP  125 (145)
Q Consensus       113 p-----------~~~w~C~~C~~~  125 (145)
                      +           +..-+|..++.+
T Consensus       373 ~~~s~~~~s~~v~~~syC~~H~pp  396 (1051)
T KOG0955|consen  373 KELSKNGTSQSVNKISYCDKHTPP  396 (1051)
T ss_pred             ccccccccccccceeeeccCCCCc
Confidence            1           346789999865

>KOG0956|consensus

Probab=98.69  E-value=5.2e-09  Score=88.91  Aligned_cols=93  Identities=25%  Similarity=0.650  Sum_probs=67.4

Q ss_pred             ccccccccc-----CceEecCC--CCCcccccccCCCCCCCCCCCeEeCccccCCCCCC-----------C--C------
Q psy14606         13 DYCEVCQQG-----GEIILCDT--CPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPET-----------A--S------   66 (145)
Q Consensus        13 ~~C~~C~~~-----g~l~~Cd~--C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~~~~~-----------~--~------   66 (145)
                      .-|-||.|.     .-||+||+  |..+.|+.|++  +.++|.|.|||..|++..-...           +  +      
T Consensus         6 GGCCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYG--IvqVPtGpWfCrKCesqeraarvrCeLCP~kdGALKkTDn~GW   83 (900)
T KOG0956|consen    6 GGCCVCSDERGWAENPLVYCDGHNCSVAVHQACYG--IVQVPTGPWFCRKCESQERAARVRCELCPHKDGALKKTDNGGW   83 (900)
T ss_pred             cceeeecCcCCCccCceeeecCCCceeeeehhcce--eEecCCCchhhhhhhhhhhhccceeecccCcccceecccCCCc
Confidence            458999985     25999995  99999999999  8899999999999976421110           0  0      


Q ss_pred             ------------------CCCc------ccccccccccccCCCC-------CCeecCC--CCCCCCCCCCCCCC
Q psy14606         67 ------------------PPAE------EVKEKEVLCAKCKSPG-------DQFLLCE--TCNGSYHPHCLPDP  107 (145)
Q Consensus        67 ------------------~~~~------~~~~~~~~C~vC~~~g-------~~ll~C~--~C~~~yH~~Cl~~~  107 (145)
                                        .||-      ..+.....|++|.+.|       ..-|.|.  .|.++||+.|-+-.
T Consensus        84 AHVVCALYIPEVrFgNV~TMEPIiLq~VP~dRfnKtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~  157 (900)
T KOG0956|consen   84 AHVVCALYIPEVRFGNVHTMEPIILQDVPHDRFNKTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRA  157 (900)
T ss_pred             eEEEEEeeccceeecccccccceeeccCchhhhcceeeeecccCCccccccccceecccccchhhhhhhHhhhh
Confidence                              1111      1223345799999976       2357887  69999999998754

>KOG0825|consensus

Probab=98.61  E-value=1.4e-08  Score=87.44  Aligned_cols=47  Identities=43%  Similarity=0.987  Sum_probs=42.8

Q ss_pred             cccccccCCCC--CCeecCCCCCCC-CCCCCCCCCCCCCCCCCceeCCCCC
Q psy14606         76 EVLCAKCKSPG--DQFLLCETCNGS-YHPHCLPDPIEGELPTSGWKCPKCS  123 (145)
Q Consensus        76 ~~~C~vC~~~g--~~ll~C~~C~~~-yH~~Cl~~~~~~~~p~~~w~C~~C~  123 (145)
                      ...|.+|...+  +.||+|+.|..+ ||.+||+|++. ++|-+.|+|++|.
T Consensus       215 ~~~C~IC~~~DpEdVLLLCDsCN~~~YH~YCLDPdl~-eiP~~eWYC~NC~  264 (1134)
T KOG0825|consen  215 EVKCDICTVHDPEDVLLLCDSCNKVYYHVYCLDPDLS-ESPVNEWYCTNCS  264 (1134)
T ss_pred             cccceeeccCChHHhheeecccccceeeccccCcccc-cccccceecCcch
Confidence            45799999877  679999999987 99999999999 9999999999994

>KOG1473|consensus

Probab=98.50  E-value=1.1e-08  Score=90.75  Aligned_cols=119  Identities=22%  Similarity=0.375  Sum_probs=91.1

Q ss_pred             ccccccccccccccCceEecCCCCCcccccccCCCCCCCCCCCeEeCccccCCCCCCCC-----------------CCC-
Q psy14606          8 QTEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPETAS-----------------PPA-   69 (145)
Q Consensus         8 ~~~~~~~C~~C~~~g~l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~~~~~~~-----------------~~~-   69 (145)
                      +..-++.|.+|.+.|++++|..|++.||..|+.++...+|+..|.|.-|..........                 |.. 
T Consensus       340 ~~~~ddhcrf~~d~~~~lc~Et~prvvhlEcv~hP~~~~~s~~~e~evc~~hkvngvvd~vl~~~K~~~~iR~~~iG~dr  419 (1414)
T KOG1473|consen  340 EIEYDDHCRFCHDLGDLLCCETCPRVVHLECVFHPRFAVPSAFWECEVCNIHKVNGVVDCVLPPSKNVDSIRHTPIGRDR  419 (1414)
T ss_pred             ceeecccccccCcccceeecccCCceEEeeecCCccccCCCccchhhhhhhhccCcccccccChhhcccceeccCCCcCc
Confidence            34567899999999999999999999999999999999999999999998665443221                 111 


Q ss_pred             --cccccccccccccCCCCCCeecCCC-CCCCCCC-CCCCCCC-CCCCCCCceeCCCCCCCCC
Q psy14606         70 --EEVKEKEVLCAKCKSPGDQFLLCET-CNGSYHP-HCLPDPI-EGELPTSGWKCPKCSCPPL  127 (145)
Q Consensus        70 --~~~~~~~~~C~vC~~~g~~ll~C~~-C~~~yH~-~Cl~~~~-~~~~p~~~w~C~~C~~~~~  127 (145)
                        ..-....-.|.+|+..+ .++.|.. |+++||. .||+... ...++.+.|+|+.|.-..+
T Consensus       420 ~gr~ywfi~rrl~Ie~~de-t~l~yysT~pqly~ll~cLd~~~~e~~L~d~i~~~~ee~~rqM  481 (1414)
T KOG1473|consen  420 YGRKYWFISRRLRIEGMDE-TLLWYYSTCPQLYHLLRCLDRTYVEMYLCDGIWERREEIIRQM  481 (1414)
T ss_pred             cccchhceeeeeEEecCCC-cEEEEecCcHHHHHHHHHhchHHHHHhhccchhhhHHHHHHhc
Confidence              11122334688999877 7888885 9999998 9999442 1167889999999954433

>KOG0825|consensus

Probab=98.44  E-value=8.5e-08  Score=82.78  Aligned_cols=48  Identities=38%  Similarity=1.041  Sum_probs=42.7

Q ss_pred             cccccccccC---ceEecCCCCCc-ccccccCCCCCCCCCCCeEeCccccCC
Q psy14606         13 DYCEVCQQGG---EIILCDTCPRA-YHLCCLDPELDETPEGKWSCPRCVSDG   60 (145)
Q Consensus        13 ~~C~~C~~~g---~l~~Cd~C~~~-~H~~Cl~p~~~~~p~~~W~C~~C~~~~   60 (145)
                      -.|.||....   -||+||.|+.+ ||.+||+|++.++|.+.|||..|.-..
T Consensus       216 ~~C~IC~~~DpEdVLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~dL~  267 (1134)
T KOG0825|consen  216 VKCDICTVHDPEDVLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCSLLE  267 (1134)
T ss_pred             ccceeeccCChHHhheeecccccceeeccccCcccccccccceecCcchhhh
Confidence            3599998754   49999999999 999999999999999999999997654

>KOG1973|consensus

Probab=98.42  E-value=1.4e-07  Score=73.87  Aligned_cols=41  Identities=29%  Similarity=0.904  Sum_probs=34.5

Q ss_pred             cccccCCCCCCeecCCC--CC-CCCCCCCCCCCCCCCCCCCceeCCCCC
Q psy14606         78 LCAKCKSPGDQFLLCET--CN-GSYHPHCLPDPIEGELPTSGWKCPKCS  123 (145)
Q Consensus        78 ~C~vC~~~g~~ll~C~~--C~-~~yH~~Cl~~~~~~~~p~~~w~C~~C~  123 (145)
                      +|. +..+| .||.||.  |+ .|||+.|++  |. ..|.+.|+|+.|.
T Consensus       223 ~Cn-qvsyg-~Mi~CDn~~C~~eWFH~~CVG--L~-~~PkgkWyC~~C~  266 (274)
T KOG1973|consen  223 ICN-QVSYG-KMIGCDNPGCPIEWFHFTCVG--LK-TKPKGKWYCPRCK  266 (274)
T ss_pred             Eec-ccccc-cccccCCCCCCcceEEEeccc--cc-cCCCCcccchhhh
Confidence            344 45566 9999996  99 999999999  55 7799999999996

>KOG1512|consensus

Probab=98.32  E-value=1.8e-07  Score=72.66  Aligned_cols=50  Identities=32%  Similarity=0.901  Sum_probs=41.9

Q ss_pred             cccccccccccccc---CceEecCCCCCcccccccCCCCCCCCCCCeEeC-ccccC
Q psy14606          8 QTEHQDYCEVCQQG---GEIILCDTCPRAYHLCCLDPELDETPEGKWSCP-RCVSD   59 (145)
Q Consensus         8 ~~~~~~~C~~C~~~---g~l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~-~C~~~   59 (145)
                      .......|.||++.   .++++||.|+|+||++|++  +..+|.|.|.|. .|...
T Consensus       310 ~C~~C~lC~IC~~P~~E~E~~FCD~CDRG~HT~CVG--L~~lP~G~WICD~~C~~~  363 (381)
T KOG1512|consen  310 KCSSCELCRICLGPVIESEHLFCDVCDRGPHTLCVG--LQDLPRGEWICDMRCREA  363 (381)
T ss_pred             hhcccHhhhccCCcccchheeccccccCCCCccccc--cccccCccchhhhHHHHh
Confidence            34455678899874   6899999999999999999  889999999998 56543

>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]

Probab=98.26  E-value=5e-07  Score=69.01  Aligned_cols=46  Identities=30%  Similarity=0.954  Sum_probs=38.1

Q ss_pred             cccccccccCCCC-CCeecCC--CCCC-CCCCCCCCCCCCCCCCCCceeCCCCC
Q psy14606         74 EKEVLCAKCKSPG-DQFLLCE--TCNG-SYHPHCLPDPIEGELPTSGWKCPKCS  123 (145)
Q Consensus        74 ~~~~~C~vC~~~g-~~ll~C~--~C~~-~yH~~Cl~~~~~~~~p~~~w~C~~C~  123 (145)
                      ....+|+ |.... +.||.||  .|.+ |||+.|++  +. ++|+|.|+|+.|.
T Consensus       219 ~e~lYCf-CqqvSyGqMVaCDn~nCkrEWFH~~CVG--Lk-~pPKG~WYC~eCk  268 (271)
T COG5034         219 GEELYCF-CQQVSYGQMVACDNANCKREWFHLECVG--LK-EPPKGKWYCPECK  268 (271)
T ss_pred             CceeEEE-ecccccccceecCCCCCchhheeccccc--cC-CCCCCcEeCHHhH
Confidence            3456898 88743 4999999  6884 99999999  56 8899999999994

>KOG4443|consensus

Probab=98.26  E-value=2.9e-07  Score=78.12  Aligned_cols=116  Identities=22%  Similarity=0.484  Sum_probs=80.3

Q ss_pred             ccccccccccccC---ceEecCCCCCcccccccCCCCCCCCCCCeEeCccccCCCCCC-CC---------CCCccccccc
Q psy14606         10 EHQDYCEVCQQGG---EIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPET-AS---------PPAEEVKEKE   76 (145)
Q Consensus        10 ~~~~~C~~C~~~g---~l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~~~~~-~~---------~~~~~~~~~~   76 (145)
                      -..-.|..|+.+|   .+++|+.|+.+||.+|+.|+...++.+.|+|+.|..+..... ..         +...-...+.
T Consensus        66 ~~crvCe~c~~~gD~~kf~~Ck~cDvsyh~yc~~P~~~~v~sg~~~ckk~~~c~qc~~~lpg~s~~~~~~~~~~~~c~s~  145 (694)
T KOG4443|consen   66 PSCRVCEACGTTGDPKKFLLCKRCDVSYHCYCQKPPNDKVPSGPWLCKKCTRCRQCDSTLPGLSLDLQEGYLQCAPCASL  145 (694)
T ss_pred             CCceeeeeccccCCcccccccccccccccccccCCccccccCcccccHHHHhhhhccccccccchhhhccCccccccccc
Confidence            3344667777554   699999999999999999999999999999998876643221 11         1222223345


Q ss_pred             ccccccCCCC-----CCeecCCCCCCCCCCCCCCCCCCCC---CCCCceeCCCCCCC
Q psy14606         77 VLCAKCKSPG-----DQFLLCETCNGSYHPHCLPDPIEGE---LPTSGWKCPKCSCP  125 (145)
Q Consensus        77 ~~C~vC~~~g-----~~ll~C~~C~~~yH~~Cl~~~~~~~---~p~~~w~C~~C~~~  125 (145)
                      .+|.+|..--     ..++.|+.|.+|-|-.|........   .-...+.|..|++.
T Consensus       146 ~~cPvc~~~Y~~~e~~~~~~c~~c~rwsh~~c~~~sdd~~~q~~vD~~~~CS~CR~e  202 (694)
T KOG4443|consen  146 SYCPVCLIVYQDSESLPMVCCSICQRWSHGGCDGISDDKYMQAQVDLQYKCSTCRGE  202 (694)
T ss_pred             ccCchHHHhhhhccchhhHHHHHhcccccCCCCccchHHHHHHhhhhhcccceeehh
Confidence            6777777622     2358999999999999987542100   01147999999754

>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function

Probab=98.20  E-value=7.8e-07  Score=63.27  Aligned_cols=29  Identities=52%  Similarity=1.316  Sum_probs=26.5

Q ss_pred             cccccccCCCCCCCCCCCeEeCccccCCC
Q psy14606         33 AYHLCCLDPELDETPEGKWSCPRCVSDGP   61 (145)
Q Consensus        33 ~~H~~Cl~p~~~~~p~~~W~C~~C~~~~~   61 (145)
                      +||++||+|+++.+|+|+|+|+.|.....
T Consensus         1 g~H~~CL~Ppl~~~P~g~W~Cp~C~~~~~   29 (148)
T cd04718           1 GFHLCCLRPPLKEVPEGDWICPFCEVEKS   29 (148)
T ss_pred             CcccccCCCCCCCCCCCCcCCCCCcCCCC
Confidence            69999999999999999999999987643

BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.

>KOG0954|consensus

Probab=98.15  E-value=1.1e-06  Score=75.51  Aligned_cols=77  Identities=29%  Similarity=0.695  Sum_probs=59.0

Q ss_pred             cccccccccccc-----CceEecCCCCCcccccccCCCCCCCCCCCeEeCccccCCCCCCCCCCCcccccccccccccCC
Q psy14606         10 EHQDYCEVCQQG-----GEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPETASPPAEEVKEKEVLCAKCKS   84 (145)
Q Consensus        10 ~~~~~C~~C~~~-----g~l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~~~~~~~~~~~~~~~~~~~C~vC~~   84 (145)
                      .++-+|.+|..+     .+||+||.|+.-.|+.|++  +..+|.+.|+|..|.-....               .|..|-+
T Consensus       269 dedviCDvCrspD~e~~neMVfCd~Cn~cVHqaCyG--Ile~p~gpWlCr~Calg~~p---------------pCvLCPk  331 (893)
T KOG0954|consen  269 DEDVICDVCRSPDSEEANEMVFCDKCNICVHQACYG--ILEVPEGPWLCRTCALGIEP---------------PCVLCPK  331 (893)
T ss_pred             cccceeceecCCCccccceeEEeccchhHHHHhhhc--eeecCCCCeeehhccccCCC---------------Ceeeccc
Confidence            467789999875     3799999999999999999  88999999999999854222               5888887


Q ss_pred             CCCCeecCCC-CCCCCCCCCC
Q psy14606         85 PGDQFLLCET-CNGSYHPHCL  104 (145)
Q Consensus        85 ~g~~ll~C~~-C~~~yH~~Cl  104 (145)
                      .| ..|.=.. =.+|-|..|-
T Consensus       332 kG-GamK~~~sgT~wAHvsCA  351 (893)
T KOG0954|consen  332 KG-GAMKPTKSGTKWAHVSCA  351 (893)
T ss_pred             cC-CcccccCCCCeeeEeeee
Confidence            66 2222222 2268888874

>KOG1973|consensus

Probab=98.03  E-value=2.5e-06  Score=66.77  Aligned_cols=46  Identities=41%  Similarity=1.090  Sum_probs=38.3

Q ss_pred             ccccc-ccccCceEecCC--CC-CcccccccCCCCCCCCCCCeEeCccccCC
Q psy14606         13 DYCEV-CQQGGEIILCDT--CP-RAYHLCCLDPELDETPEGKWSCPRCVSDG   60 (145)
Q Consensus        13 ~~C~~-C~~~g~l~~Cd~--C~-~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~   60 (145)
                      .+|.. +...|+||-||.  |+ .-||+.|++  |...|.|.|||+.|+...
T Consensus       220 ~yC~Cnqvsyg~Mi~CDn~~C~~eWFH~~CVG--L~~~PkgkWyC~~C~~~~  269 (274)
T KOG1973|consen  220 TYCICNQVSYGKMIGCDNPGCPIEWFHFTCVG--LKTKPKGKWYCPRCKAEN  269 (274)
T ss_pred             EEEEecccccccccccCCCCCCcceEEEeccc--cccCCCCcccchhhhhhh
Confidence            34443 556799999997  99 899999999  889999999999998543

>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]

Probab=98.01  E-value=3.7e-06  Score=64.35  Aligned_cols=45  Identities=49%  Similarity=1.202  Sum_probs=37.7

Q ss_pred             ccccccccccc--CceEecCC--CCC-cccccccCCCCCCCCCCCeEeCcccc
Q psy14606         11 HQDYCEVCQQG--GEIILCDT--CPR-AYHLCCLDPELDETPEGKWSCPRCVS   58 (145)
Q Consensus        11 ~~~~C~~C~~~--g~l~~Cd~--C~~-~~H~~Cl~p~~~~~p~~~W~C~~C~~   58 (145)
                      +.-+|+ |.+.  |+||-||+  |.+ -||+.|++  +...|+|.|||+.|+.
T Consensus       220 e~lYCf-CqqvSyGqMVaCDn~nCkrEWFH~~CVG--Lk~pPKG~WYC~eCk~  269 (271)
T COG5034         220 EELYCF-CQQVSYGQMVACDNANCKREWFHLECVG--LKEPPKGKWYCPECKK  269 (271)
T ss_pred             ceeEEE-ecccccccceecCCCCCchhheeccccc--cCCCCCCcEeCHHhHh
Confidence            344554 6664  89999994  988 89999999  8899999999999974

>KOG0957|consensus

Probab=97.83  E-value=8.2e-06  Score=67.82  Aligned_cols=45  Identities=38%  Similarity=1.001  Sum_probs=39.2

Q ss_pred             ccccccCCCC--CCeecCCCCCCCCCCCCCCCCCCCCCCC----CceeCCCC
Q psy14606         77 VLCAKCKSPG--DQFLLCETCNGSYHPHCLPDPIEGELPT----SGWKCPKC  122 (145)
Q Consensus        77 ~~C~vC~~~g--~~ll~C~~C~~~yH~~Cl~~~~~~~~p~----~~w~C~~C  122 (145)
                      ..|.+|++.-  ..+++||+|...||+.||.||++ .+|+    ..|.|..|
T Consensus       545 ysCgiCkks~dQHll~~CDtC~lhYHlGCL~PPLT-R~Pkk~kn~gWqCsEC  595 (707)
T KOG0957|consen  545 YSCGICKKSTDQHLLTQCDTCHLHYHLGCLSPPLT-RLPKKNKNFGWQCSEC  595 (707)
T ss_pred             eeeeeeccchhhHHHhhcchhhceeeccccCCccc-cCcccccCcceeeccc
Confidence            3699999865  34899999999999999999999 7775    47999999

>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A

Probab=97.80  E-value=4.9e-06  Score=45.50  Aligned_cols=34  Identities=38%  Similarity=1.084  Sum_probs=19.6

Q ss_pred             CceEecCCCCCcccccccCCCCCCCCCC-CeEeCccc
Q psy14606         22 GEIILCDTCPRAYHLCCLDPELDETPEG-KWSCPRCV   57 (145)
Q Consensus        22 g~l~~Cd~C~~~~H~~Cl~p~~~~~p~~-~W~C~~C~   57 (145)
                      ..|+.|++|..++|..|++  +..++.+ .|+|..|+
T Consensus         2 n~ll~C~~C~v~VH~~CYG--v~~~~~~~~W~C~~C~   36 (36)
T PF13831_consen    2 NPLLFCDNCNVAVHQSCYG--VSEVPDGDDWLCDRCE   36 (36)
T ss_dssp             CEEEE-SSS--EEEHHHHT---SS--SS-----HHH-
T ss_pred             CceEEeCCCCCcCChhhCC--cccCCCCCcEECCcCC
Confidence            4689999999999999999  5566665 79998874

>KOG0957|consensus

Probab=97.76  E-value=9.9e-06  Score=67.35  Aligned_cols=44  Identities=39%  Similarity=1.010  Sum_probs=38.9

Q ss_pred             ccccccccC---ceEecCCCCCcccccccCCCCCCCCCC----CeEeCccc
Q psy14606         14 YCEVCQQGG---EIILCDTCPRAYHLCCLDPELDETPEG----KWSCPRCV   57 (145)
Q Consensus        14 ~C~~C~~~g---~l~~Cd~C~~~~H~~Cl~p~~~~~p~~----~W~C~~C~   57 (145)
                      .|.||++.-   -|+.||.|...||+.||.||++..|+.    .|+|..|-
T Consensus       546 sCgiCkks~dQHll~~CDtC~lhYHlGCL~PPLTR~Pkk~kn~gWqCsECd  596 (707)
T KOG0957|consen  546 SCGICKKSTDQHLLTQCDTCHLHYHLGCLSPPLTRLPKKNKNFGWQCSECD  596 (707)
T ss_pred             eeeeeccchhhHHHhhcchhhceeeccccCCccccCcccccCcceeecccc
Confidence            599999864   389999999999999999999998863    79999994

>KOG1245|consensus

Probab=97.31  E-value=4.1e-05  Score=71.08  Aligned_cols=51  Identities=37%  Similarity=1.054  Sum_probs=45.5

Q ss_pred             ccccccccccccC---ceEecCCCCCcccccccCCCCCCCCCCCeEeCccccCC
Q psy14606         10 EHQDYCEVCQQGG---EIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDG   60 (145)
Q Consensus        10 ~~~~~C~~C~~~g---~l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~   60 (145)
                      .....|.+|...+   +++.|+.|..+||.+|+.|.+..+|.++|+|+.|++..
T Consensus      1106 ~~~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1106 AVNALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKEH 1159 (1404)
T ss_pred             cchhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchhh
Confidence            4566899998754   58999999999999999999999999999999998764

>KOG1245|consensus

Probab=97.24  E-value=4.8e-05  Score=70.65  Aligned_cols=63  Identities=24%  Similarity=0.738  Sum_probs=49.6

Q ss_pred             ccccccccccCCCC--CCeecCCCCCCCCCCCCCCCCCCCCCCCCceeCCCCCCCCCCCchhhcccccc
Q psy14606         73 KEKEVLCAKCKSPG--DQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCSCPPLPGKLEDMASLLR  139 (145)
Q Consensus        73 ~~~~~~C~vC~~~g--~~ll~C~~C~~~yH~~Cl~~~~~~~~p~~~w~C~~C~~~~~~~~~~~~~~~~~  139 (145)
                      +.....|.+|...+  ..|+.|+.|.++||..|+.|.+. ++|.++|+|+.|+..   ...++++.|+.
T Consensus      1105 s~~~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~-~~~~~dW~C~~c~~e---~~~rr~~~~~~ 1169 (1404)
T KOG1245|consen 1105 SAVNALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALS-SVPPGDWMCPSCRKE---HRARRQKRFRK 1169 (1404)
T ss_pred             ccchhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhc-cCCcCCccCCccchh---hhhhhhhhhhc
Confidence            34455899999866  47999999999999999999999 999999999999622   12444455543

>KOG4323|consensus

Probab=97.01  E-value=0.00037  Score=57.91  Aligned_cols=47  Identities=34%  Similarity=0.890  Sum_probs=39.3

Q ss_pred             ccccccccC-----ceEecCCCCCcccccccCCCCCC----CCCCCeEeCccccCC
Q psy14606         14 YCEVCQQGG-----EIILCDTCPRAYHLCCLDPELDE----TPEGKWSCPRCVSDG   60 (145)
Q Consensus        14 ~C~~C~~~g-----~l~~Cd~C~~~~H~~Cl~p~~~~----~p~~~W~C~~C~~~~   60 (145)
                      .|.+|..++     +||.|+.|..-||+.|..|.+..    .+...|+|..|....
T Consensus       170 qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~  225 (464)
T KOG4323|consen  170 QCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRGP  225 (464)
T ss_pred             eeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccch
Confidence            499998653     79999999999999999998764    356799999997653

>KOG0955|consensus

Probab=96.95  E-value=0.0005  Score=62.19  Aligned_cols=45  Identities=27%  Similarity=0.829  Sum_probs=39.2

Q ss_pred             cccccccCCCC----CCeecCCCCCCCCCCCCCCCCCCCCCCCCceeCCCCC
Q psy14606         76 EVLCAKCKSPG----DQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCS  123 (145)
Q Consensus        76 ~~~C~vC~~~g----~~ll~C~~C~~~yH~~Cl~~~~~~~~p~~~w~C~~C~  123 (145)
                      ..+|.+|.+..    +..|+||.|+.++|.+|.+.+   -+|++.|+|..|.
T Consensus       219 D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cygi~---~ipeg~WlCr~Cl  267 (1051)
T KOG0955|consen  219 DAVCCICLDGECQNSNVIVFCDGCNLAVHQECYGIP---FIPEGQWLCRRCL  267 (1051)
T ss_pred             CccceeecccccCCCceEEEcCCCcchhhhhccCCC---CCCCCcEeehhhc
Confidence            45899999865    468999999999999999943   7799999999996

>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain

Probab=96.50  E-value=0.0025  Score=42.89  Aligned_cols=84  Identities=17%  Similarity=0.407  Sum_probs=47.3

Q ss_pred             ccccccccCceEecCCCCCcccccccCCCCCCCCCCCeEeCccccCCCCCCCCCCCc-ccccccccccccCCCCCCeecC
Q psy14606         14 YCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPETASPPAE-EVKEKEVLCAKCKSPGDQFLLC   92 (145)
Q Consensus        14 ~C~~C~~~g~l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~~~~~~~~~~~-~~~~~~~~C~vC~~~g~~ll~C   92 (145)
                      .|.+|...|.++.-..-++-.|..|+.- ...+   .+.-.      ....+-+.+. ..+.....|.+|+..+...++|
T Consensus         2 ~C~lC~~~~Galk~t~~~~WvHv~Cal~-~~~~---~~~~~------~~~~~v~~~~i~~~~~~~~C~iC~~~~G~~i~C   71 (110)
T PF13832_consen    2 SCVLCPKRGGALKRTSDGQWVHVLCALW-IPEV---IFNNG------ESMEPVDISNIPPSRFKLKCSICGKSGGACIKC   71 (110)
T ss_pred             ccEeCCCCCCcccCccCCcEEEeEccce-eCcc---EEeec------hhcCcccceeecchhcCCcCcCCCCCCceeEEc
Confidence            4778877655544444566777777762 1111   00000      0000000000 1112345799999965489999


Q ss_pred             CC--CCCCCCCCCCCCC
Q psy14606         93 ET--CNGSYHPHCLPDP  107 (145)
Q Consensus        93 ~~--C~~~yH~~Cl~~~  107 (145)
                      ..  |.++||+.|....
T Consensus        72 ~~~~C~~~fH~~CA~~~   88 (110)
T PF13832_consen   72 SHPGCSTAFHPTCARKA   88 (110)
T ss_pred             CCCCCCcCCCHHHHHHC
Confidence            97  9999999997653

>KOG0954|consensus

Probab=96.43  E-value=0.001  Score=57.81  Aligned_cols=46  Identities=35%  Similarity=1.016  Sum_probs=40.6

Q ss_pred             ccccccccCCCC----CCeecCCCCCCCCCCCCCCCCCCCCCCCCceeCCCCC
Q psy14606         75 KEVLCAKCKSPG----DQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCS  123 (145)
Q Consensus        75 ~~~~C~vC~~~g----~~ll~C~~C~~~yH~~Cl~~~~~~~~p~~~w~C~~C~  123 (145)
                      ...+|.||..++    .+|++|+.|.-..|..|.+  +. ++|.+.|+|..|.
T Consensus       270 edviCDvCrspD~e~~neMVfCd~Cn~cVHqaCyG--Il-e~p~gpWlCr~Ca  319 (893)
T KOG0954|consen  270 EDVICDVCRSPDSEEANEMVFCDKCNICVHQACYG--IL-EVPEGPWLCRTCA  319 (893)
T ss_pred             ccceeceecCCCccccceeEEeccchhHHHHhhhc--ee-ecCCCCeeehhcc
Confidence            456899999984    6899999999999999998  45 8999999999993

>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A

Probab=95.85  E-value=0.00024  Score=38.79  Aligned_cols=32  Identities=34%  Similarity=1.021  Sum_probs=18.2

Q ss_pred             CeecCCCCCCCCCCCCCCCCCCCCCCCC-ceeCCCC
Q psy14606         88 QFLLCETCNGSYHPHCLPDPIEGELPTS-GWKCPKC  122 (145)
Q Consensus        88 ~ll~C~~C~~~yH~~Cl~~~~~~~~p~~-~w~C~~C  122 (145)
                      .||.|+.|.-++|..|.+..   .++.+ .|+|..|
T Consensus         3 ~ll~C~~C~v~VH~~CYGv~---~~~~~~~W~C~~C   35 (36)
T PF13831_consen    3 PLLFCDNCNVAVHQSCYGVS---EVPDGDDWLCDRC   35 (36)
T ss_dssp             EEEE-SSS--EEEHHHHT-S---S--SS-----HHH
T ss_pred             ceEEeCCCCCcCChhhCCcc---cCCCCCcEECCcC
Confidence            68999999999999999964   44554 7999766

>KOG1473|consensus

Probab=95.48  E-value=0.0083  Score=54.58  Aligned_cols=57  Identities=30%  Similarity=0.646  Sum_probs=48.0

Q ss_pred             cccccccccccccCCCCCCeecCCCCCCCCCCCCCCCCCCCCCCCCceeCCCCCCCCCC
Q psy14606         70 EEVKEKEVLCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCSCPPLP  128 (145)
Q Consensus        70 ~~~~~~~~~C~vC~~~g~~ll~C~~C~~~yH~~Cl~~~~~~~~p~~~w~C~~C~~~~~~  128 (145)
                      ++.......|.+|.+.| .++.|..|++.||..|+.+|+. ++|...|-|-.|.-...+
T Consensus       338 e~~~~~ddhcrf~~d~~-~~lc~Et~prvvhlEcv~hP~~-~~~s~~~e~evc~~hkvn  394 (1414)
T KOG1473|consen  338 EGEIEYDDHCRFCHDLG-DLLCCETCPRVVHLECVFHPRF-AVPSAFWECEVCNIHKVN  394 (1414)
T ss_pred             ccceeecccccccCccc-ceeecccCCceEEeeecCCccc-cCCCccchhhhhhhhccC
Confidence            34445556899999998 8999999999999999999999 999999999999644433

>KOG0956|consensus

Probab=95.39  E-value=0.0048  Score=53.52  Aligned_cols=45  Identities=31%  Similarity=0.884  Sum_probs=37.5

Q ss_pred             cccccCCC-C---CCeecCC--CCCCCCCCCCCCCCCCCCCCCCceeCCCCCCC
Q psy14606         78 LCAKCKSP-G---DQFLLCE--TCNGSYHPHCLPDPIEGELPTSGWKCPKCSCP  125 (145)
Q Consensus        78 ~C~vC~~~-g---~~ll~C~--~C~~~yH~~Cl~~~~~~~~p~~~w~C~~C~~~  125 (145)
                      -|-||.+. |   ..||.||  .|.-++|..|.+  +. .+|.+.|||..|...
T Consensus         7 GCCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYG--Iv-qVPtGpWfCrKCesq   57 (900)
T KOG0956|consen    7 GCCVCSDERGWAENPLVYCDGHNCSVAVHQACYG--IV-QVPTGPWFCRKCESQ   57 (900)
T ss_pred             ceeeecCcCCCccCceeeecCCCceeeeehhcce--eE-ecCCCchhhhhhhhh
Confidence            57788773 3   4699999  799999999999  45 899999999999543

>COG5141 PHD zinc finger-containing protein [General function prediction only]

Probab=95.13  E-value=0.0071  Score=50.68  Aligned_cols=45  Identities=31%  Similarity=0.793  Sum_probs=37.9

Q ss_pred             cccccccCCCC----CCeecCCCCCCCCCCCCCCCCCCCCCCCCceeCCCCC
Q psy14606         76 EVLCAKCKSPG----DQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCS  123 (145)
Q Consensus        76 ~~~C~vC~~~g----~~ll~C~~C~~~yH~~Cl~~~~~~~~p~~~w~C~~C~  123 (145)
                      ...|.+|.+..    ..+++|+.|+-+.|..|.+.+   -+|+|.|+|..|.
T Consensus       193 d~~C~~c~~t~~eN~naiVfCdgC~i~VHq~CYGI~---f~peG~WlCrkCi  241 (669)
T COG5141         193 DDICTKCTSTHNENSNAIVFCDGCEICVHQSCYGIQ---FLPEGFWLCRKCI  241 (669)
T ss_pred             hhhhHhccccccCCcceEEEecCcchhhhhhcccce---ecCcchhhhhhhc
Confidence            45788888754    358999999999999999965   7799999999994

>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain

Probab=94.68  E-value=0.016  Score=42.15  Aligned_cols=45  Identities=27%  Similarity=0.760  Sum_probs=30.9

Q ss_pred             ccccCCCC-----CCeecCCCCCCCCCCCCCCCCCC-----CCCCCC--ceeCCCCC
Q psy14606         79 CAKCKSPG-----DQFLLCETCNGSYHPHCLPDPIE-----GELPTS--GWKCPKCS  123 (145)
Q Consensus        79 C~vC~~~g-----~~ll~C~~C~~~yH~~Cl~~~~~-----~~~p~~--~w~C~~C~  123 (145)
                      |.+|+..|     ..||.|..|..+||..||++...     +.+..+  ...|..|.
T Consensus         2 C~~C~~~g~~~~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Ci   58 (175)
T PF15446_consen    2 CDTCGYEGDDRNKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCI   58 (175)
T ss_pred             cccccCCCCCccCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEechhhc
Confidence            66775422     37999999999999999998621     133333  34577764

>PF14446 Prok-RING_1: Prokaryotic RING finger family 1

Probab=94.61  E-value=0.019  Score=34.00  Aligned_cols=30  Identities=33%  Similarity=0.888  Sum_probs=25.9

Q ss_pred             ccccccccc----cCceEecCCCCCcccccccCC
Q psy14606         12 QDYCEVCQQ----GGEIILCDTCPRAYHLCCLDP   41 (145)
Q Consensus        12 ~~~C~~C~~----~g~l~~Cd~C~~~~H~~Cl~p   41 (145)
                      ...|.+|++    +++++.|..|...||..|...
T Consensus         5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~   38 (54)
T PF14446_consen    5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK   38 (54)
T ss_pred             CccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence            347999986    578999999999999999964

>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain

Probab=92.77  E-value=0.034  Score=35.84  Aligned_cols=31  Identities=29%  Similarity=0.776  Sum_probs=26.7

Q ss_pred             cccccccCCC-CCCeecCC--CCCCCCCCCCCCCC
Q psy14606         76 EVLCAKCKSP-GDQFLLCE--TCNGSYHPHCLPDP  107 (145)
Q Consensus        76 ~~~C~vC~~~-g~~ll~C~--~C~~~yH~~Cl~~~  107 (145)
                      ...|.+|++. | ..|.|.  .|.+.||+.|....
T Consensus        36 ~~~C~~C~~~~G-a~i~C~~~~C~~~fH~~CA~~~   69 (90)
T PF13771_consen   36 KLKCSICKKKGG-ACIGCSHPGCSRSFHVPCARKA   69 (90)
T ss_pred             CCCCcCCCCCCC-eEEEEeCCCCCcEEChHHHccC
Confidence            3479999998 7 899998  59999999998764

>PF13901 DUF4206: Domain of unknown function (DUF4206)

Probab=92.65  E-value=0.092  Score=39.37  Aligned_cols=36  Identities=33%  Similarity=1.023  Sum_probs=29.5

Q ss_pred             cccccCCCC-------CCeecCCCCCCCCCCCCCCCCCCCCCCCCceeCCCCC
Q psy14606         78 LCAKCKSPG-------DQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCS  123 (145)
Q Consensus        78 ~C~vC~~~g-------~~ll~C~~C~~~yH~~Cl~~~~~~~~p~~~w~C~~C~  123 (145)
                      +|.+|++.+       +..+.|..|...||..|...  .        .||.|.
T Consensus       154 iCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~--~--------~CpkC~  196 (202)
T PF13901_consen  154 ICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK--K--------SCPKCA  196 (202)
T ss_pred             CCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC--C--------CCCCcH
Confidence            688898755       47899999999999999883  2        199885

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=92.62  E-value=0.035  Score=36.02  Aligned_cols=48  Identities=25%  Similarity=0.722  Sum_probs=33.2

Q ss_pred             cccccccccccc-----------Cc---eEecCCCCCcccccccCCCCCCCCCCCeEeCccccC
Q psy14606         10 EHQDYCEVCQQG-----------GE---IILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSD   59 (145)
Q Consensus        10 ~~~~~C~~C~~~-----------g~---l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~   59 (145)
                      .+|+.|.||+..           |+   |++.. |...||..|+...++.- ...-.||-|+..
T Consensus        19 ~~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~-C~H~FH~hCI~kWl~~~-~~~~~CPmCR~~   80 (85)
T PF12861_consen   19 ANDDVCGICRMPFDGCCPDCKFPGDDCPLVWGK-CSHNFHMHCILKWLSTQ-SSKGQCPMCRQP   80 (85)
T ss_pred             CCCCceeeEecccccCCCCccCCCCCCceeecc-CccHHHHHHHHHHHccc-cCCCCCCCcCCe
Confidence            457888888752           22   55444 99999999998766543 234588888753

>PF14446 Prok-RING_1: Prokaryotic RING finger family 1

Probab=92.39  E-value=0.084  Score=31.30  Aligned_cols=30  Identities=30%  Similarity=0.916  Sum_probs=25.2

Q ss_pred             ccccccCCC---CCCeecCCCCCCCCCCCCCCC
Q psy14606         77 VLCAKCKSP---GDQFLLCETCNGSYHPHCLPD  106 (145)
Q Consensus        77 ~~C~vC~~~---g~~ll~C~~C~~~yH~~Cl~~  106 (145)
                      ..|.+|++.   +++++.|..|..-||..|-..
T Consensus         6 ~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~   38 (54)
T PF14446_consen    6 CKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK   38 (54)
T ss_pred             ccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence            469999983   468999999999999999754

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=91.74  E-value=0.015  Score=32.55  Aligned_cols=41  Identities=32%  Similarity=0.759  Sum_probs=25.8

Q ss_pred             ccccccccc---CceEecCCCCCcccccccCCCCCCCCCCCeEeCccc
Q psy14606         13 DYCEVCQQG---GEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCV   57 (145)
Q Consensus        13 ~~C~~C~~~---g~l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~   57 (145)
                      +.|.||.++   ++.+.--.|+..||..|+...+...    ..||.|+
T Consensus         1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~----~~CP~CR   44 (44)
T PF13639_consen    1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRN----NSCPVCR   44 (44)
T ss_dssp             -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHS----SB-TTTH
T ss_pred             CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhC----CcCCccC
Confidence            468888863   3333333499999999998655432    2677663

...

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=91.28  E-value=0.026  Score=35.24  Aligned_cols=47  Identities=30%  Similarity=0.636  Sum_probs=19.1

Q ss_pred             cccccccccc----Cc--eEecC--CCCCcccccccCCCCCCCC-------CCCeEeCcccc
Q psy14606         12 QDYCEVCQQG----GE--IILCD--TCPRAYHLCCLDPELDETP-------EGKWSCPRCVS   58 (145)
Q Consensus        12 ~~~C~~C~~~----g~--l~~Cd--~C~~~~H~~Cl~p~~~~~p-------~~~W~C~~C~~   58 (145)
                      +..|.||.+.    ++  .+.|+  .|...||..||.-.+...+       .-...||.|..
T Consensus         2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~   63 (70)
T PF11793_consen    2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSS   63 (70)
T ss_dssp             --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-S
T ss_pred             CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCC
Confidence            3578899753    32  48898  8999999999985443211       12457888864

>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain

Probab=90.51  E-value=0.13  Score=33.10  Aligned_cols=30  Identities=30%  Similarity=0.850  Sum_probs=26.3

Q ss_pred             cccccccccc-CceEecC--CCCCcccccccCC
Q psy14606         12 QDYCEVCQQG-GEIILCD--TCPRAYHLCCLDP   41 (145)
Q Consensus        12 ~~~C~~C~~~-g~l~~Cd--~C~~~~H~~Cl~p   41 (145)
                      ...|.+|+.. |-.+-|.  +|.+.||..|+.-
T Consensus        36 ~~~C~~C~~~~Ga~i~C~~~~C~~~fH~~CA~~   68 (90)
T PF13771_consen   36 KLKCSICKKKGGACIGCSHPGCSRSFHVPCARK   68 (90)
T ss_pred             CCCCcCCCCCCCeEEEEeCCCCCcEEChHHHcc
Confidence            3579999998 9899998  5999999999973

>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain

Probab=90.43  E-value=0.13  Score=34.50  Aligned_cols=31  Identities=32%  Similarity=0.855  Sum_probs=26.7

Q ss_pred             cccccccccc-cCceEecCC--CCCcccccccCC
Q psy14606         11 HQDYCEVCQQ-GGEIILCDT--CPRAYHLCCLDP   41 (145)
Q Consensus        11 ~~~~C~~C~~-~g~l~~Cd~--C~~~~H~~Cl~p   41 (145)
                      ....|.+|++ .|-++.|..  |..+||..|+..
T Consensus        54 ~~~~C~iC~~~~G~~i~C~~~~C~~~fH~~CA~~   87 (110)
T PF13832_consen   54 FKLKCSICGKSGGACIKCSHPGCSTAFHPTCARK   87 (110)
T ss_pred             cCCcCcCCCCCCceeEEcCCCCCCcCCCHHHHHH
Confidence            3568999998 588999997  999999999973

>KOG4628|consensus

Probab=86.50  E-value=0.41  Score=38.85  Aligned_cols=44  Identities=34%  Similarity=0.859  Sum_probs=33.8

Q ss_pred             ccccccccc---CceEecCCCCCcccccccCCCCCCCCCCCeEeCccccC
Q psy14606         13 DYCEVCQQG---GEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSD   59 (145)
Q Consensus        13 ~~C~~C~~~---g~l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~   59 (145)
                      +.|.||.++   |+.|.==-|...||..|++|.+.+.   .-+||-|+..
T Consensus       230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~---r~~CPvCK~d  276 (348)
T KOG4628|consen  230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT---RTFCPVCKRD  276 (348)
T ss_pred             ceEEEeecccccCCeeeEecCCCchhhccchhhHhhc---CccCCCCCCc
Confidence            589999874   6654446699999999999988765   3468888754

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=83.06  E-value=0.33  Score=30.35  Aligned_cols=43  Identities=28%  Similarity=0.767  Sum_probs=26.7

Q ss_pred             ccccccccccc-----------C-c-eEecCCCCCcccccccCCCCCCCCCCCeEeCccc
Q psy14606         11 HQDYCEVCQQG-----------G-E-IILCDTCPRAYHLCCLDPELDETPEGKWSCPRCV   57 (145)
Q Consensus        11 ~~~~C~~C~~~-----------g-~-l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~   57 (145)
                      .++.|.||...           + + .+.=..|+..||..|+...+...    ..||.|+
T Consensus        18 ~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~----~~CP~CR   73 (73)
T PF12678_consen   18 ADDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQN----NTCPLCR   73 (73)
T ss_dssp             CCSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTS----SB-TTSS
T ss_pred             cCCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcC----CcCCCCC
Confidence            45569999853           1 1 22224699999999998554432    3677764

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>KOG1246|consensus

Probab=82.82  E-value=0.97  Score=41.12  Aligned_cols=48  Identities=42%  Similarity=1.223  Sum_probs=40.8

Q ss_pred             ccccccccccCc--eEecCCCCCcccccccCCCCCCCCCCCeEeCccccC
Q psy14606         12 QDYCEVCQQGGE--IILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSD   59 (145)
Q Consensus        12 ~~~C~~C~~~g~--l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~   59 (145)
                      ...|..|.++.+  ++.|++|...||..|..+++..++++.|.|+.|...
T Consensus       155 ~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (904)
T KOG1246|consen  155 YPQCNTCSKGKEEKLLLCDSCDDSYHTYCLRPPLTRVPDGDWRCPKCIPT  204 (904)
T ss_pred             chhhhccccCCCccceecccccCcccccccCCCCCcCCcCcccCCccccc
Confidence            346888887652  339999999999999999999999999999999765

>KOG1081|consensus

Probab=81.13  E-value=1.2  Score=37.70  Aligned_cols=49  Identities=22%  Similarity=0.465  Sum_probs=36.6

Q ss_pred             ccccccccccccccccCceEecCCCCCcccccccCCCCCCCCCCCeEeCccc
Q psy14606          6 DLQTEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCV   57 (145)
Q Consensus         6 ~~~~~~~~~C~~C~~~g~l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~   57 (145)
                      ..+..+.+.|++|.++|+++.|+.+..++|..|...   ..+...|.+..++
T Consensus        83 ~~~~~~~~~c~vc~~ggs~v~~~s~~~~~~r~c~~~---~~~~c~~~~~d~~  131 (463)
T KOG1081|consen   83 RHPKIEPSECFVCFKGGSLVTCKSRIQAPHRKCKPA---QLEKCSKRCTDCR  131 (463)
T ss_pred             hccCCCcchhccccCCCccceeccccccccccCcCc---cCcccccCCccee
Confidence            344567789999999999999998888888888752   3445556655554

>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []

Probab=80.26  E-value=1.5  Score=36.73  Aligned_cols=55  Identities=18%  Similarity=0.566  Sum_probs=36.5

Q ss_pred             cccccCCCC-----CCeecCCCCCCCCCCCCCCCC--------CCCC--CCCCceeCCCCCCCCCCCchhhccccc
Q psy14606         78 LCAKCKSPG-----DQFLLCETCNGSYHPHCLPDP--------IEGE--LPTSGWKCPKCSCPPLPGKLEDMASLL  138 (145)
Q Consensus        78 ~C~vC~~~g-----~~ll~C~~C~~~yH~~Cl~~~--------~~~~--~p~~~w~C~~C~~~~~~~~~~~~~~~~  138 (145)
                      .|.+|.+.+     -..|.|+.|+-|-|..|--..        ..+.  ..+..|+|..|.      +...++.|+
T Consensus       130 ~C~iC~kfD~~~n~~~Wi~Cd~CgH~cH~dCALr~~~i~~G~s~~g~~g~~d~~f~C~~C~------~~seLlG~v  199 (446)
T PF07227_consen  130 MCCICSKFDDNKNTCSWIGCDVCGHWCHLDCALRHELIGTGPSVKGSIGTLDMQFHCRACG------KTSELLGFV  199 (446)
T ss_pred             CccccCCcccCCCCeeEEeccCCCceehhhhhcccccccCCccCCCCCccCceEEEccCCC------ChhhHHHHH
Confidence            388898754     248999999999999995332        1101  124479999995      444455554

Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.

>PF13901 DUF4206: Domain of unknown function (DUF4206)

Probab=80.09  E-value=1.3  Score=33.22  Aligned_cols=37  Identities=30%  Similarity=0.903  Sum_probs=28.3

Q ss_pred             ccccccccccC--------ceEecCCCCCcccccccCCCCCCCCCCCeEeCccc
Q psy14606         12 QDYCEVCQQGG--------EIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCV   57 (145)
Q Consensus        12 ~~~C~~C~~~g--------~l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~   57 (145)
                      ..+|.+|.+++        ..+.|..|...||..|...         -.||.|.
T Consensus       152 GfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~---------~~CpkC~  196 (202)
T PF13901_consen  152 GFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK---------KSCPKCA  196 (202)
T ss_pred             CCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC---------CCCCCcH
Confidence            45788887642        5789999999999999982         1288875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	145
2l5u_A	61	Structure Of The First Phd Finger (Phd1) From Chd4		9e-20
2puy_A	60	Crystal Structure Of The Bhc80 Phd Finger Length =		5e-12
2yql_A	56	Solution Structure Of The Phd Domain In Phd Finger		6e-12
1mm3_A	61	Solution Structure Of The 2nd Phd Domain From Mi2b		2e-11
1mm3_A	61	Solution Structure Of The 2nd Phd Domain From Mi2b		2e-06
1mm2_A	61	Solution Structure Of The 2nd Phd Domain From Mi2b		3e-11
1mm2_A	61	Solution Structure Of The 2nd Phd Domain From Mi2b		2e-06
1xwh_A	66	Nmr Structure Of The First Phd Finger Of Autoimmune		6e-11
2kft_A	56	Nmr Solution Structure Of The First Phd Finger Doma		2e-10
2ysm_A	111	Solution Structure Of The First And Second Phd Doma		3e-09
3u5m_A	207	Crystal Structure Of Trim33 Phd-Bromo In The Free S		8e-09
3o33_A	184	Crystal Structure Of Trim24 Phd-Bromo In The Free S		9e-09
4gnd_A	107	Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains		8e-08
1f62_A	51	Wstf-Phd Length = 51		1e-07
2e6r_A	92	Solution Structure Of The Phd Domain In Smcy Protei		6e-06
2kwj_A	114	Solution Structures Of The Double Phd Fingers Of Hu		5e-05
2ro1_A	189	Nmr Solution Structures Of Human Kap1 Phd Finger-Br		2e-04
1fp0_A	88	Solution Structure Of The Phd Domain From The Kap-1		4e-04
2e6s_A	77	Solution Structure Of The Phd Domain In Ring Finger		7e-04
3ask_A	226	Structure Of Uhrf1 In Complex With Histone Tail Len		8e-04

>pdb|2L5U|A Chain A, Structure Of The First Phd Finger (Phd1) From Chd4 (Mi2b) Length = 61

Iteration: 1
 Score = 92.4 bits (228), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 40/57 (70%), Positives = 49/57 (85%)
Query: 4  IQDLQTEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDG 60
          +   +T+HQDYCEVCQQGGEIILCDTCPRAYH+ CLDP++++ PEGKWSCP C  +G
Sbjct: 3  LGSYETDHQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKEG 59

>pdb|2PUY|A Chain A, Crystal Structure Of The Bhc80 Phd Finger Length = 60

Iteration: 1
 Score = 66.6 bits (161), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 26/46 (56%), Positives = 35/46 (76%)
Query: 11 HQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRC 56
          H+D+C VC++ G++++CDTC R YHL CLDP L   P+G W CPRC
Sbjct: 4  HEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRC 49

>pdb|2YQL|A Chain A, Solution Structure Of The Phd Domain In Phd Finger Protein 21a Length = 56

Iteration: 1
 Score = 66.2 bits (160), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 26/48 (54%), Positives = 36/48 (75%)
Query: 9  TEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRC 56
          + H+D+C VC++ G++++CDTC R YHL CLDP L   P+G W CPRC
Sbjct: 6  SGHEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRC 53

>pdb|1MM3|A Chain A, Solution Structure Of The 2nd Phd Domain From Mi2b With C- Terminal Loop Replaced By Corresponding Loop From Wstf Length = 61

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 26/48 (54%), Positives = 35/48 (72%)
Query: 10 EHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCV 57
           H ++C VC+ GGE++ CDTCP +YH+ CL P L E P+G+W CPRC 
Sbjct: 7  HHMEFCRVCKDGGELLCCDTCPSSYHIHCLRPALYEVPDGEWQCPRCT 54

>pdb|1MM3|A Chain A, Solution Structure Of The 2nd Phd Domain From Mi2b With C- Terminal Loop Replaced By Corresponding Loop From Wstf Length = 61

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/53 (49%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 78  LCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCSCPPLPGK 130
            C  CK  G + L C+TC  SYH HCL  P   E+P   W+CP+C+CP L GK
Sbjct: 11  FCRVCKD-GGELLCCDTCPSSYHIHCL-RPALYEVPDGEWQCPRCTCPALKGK 61

>pdb|1MM2|A Chain A, Solution Structure Of The 2nd Phd Domain From Mi2b Length = 61

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 26/48 (54%), Positives = 35/48 (72%)
Query: 10 EHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCV 57
           H ++C VC+ GGE++ CDTCP +YH+ CL+P L E P G+W CPRC 
Sbjct: 7  HHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCT 54

>pdb|1MM2|A Chain A, Solution Structure Of The 2nd Phd Domain From Mi2b Length = 61

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/53 (49%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 78  LCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCSCPPLPGK 130
            C  CK  G + L C+TC  SYH HCL  P+  E+P   W CP+C+CP L GK
Sbjct: 11  FCRVCKD-GGELLCCDTCPSSYHIHCLNPPLP-EIPNGEWLCPRCTCPALKGK 61

>pdb|1XWH|A Chain A, Nmr Structure Of The First Phd Finger Of Autoimmune Regulator Protein (Aire1): Insights Into Apeced Length = 66

Iteration: 1
 Score = 63.2 bits (152), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 7  LQTEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPETAS 66
          +  +++D C VC+ GGE+I CD CPRA+HL CL P L E P G W C  C+     E   
Sbjct: 3  MAQKNEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQEV-Q 61
Query: 67 PPAEE 71
          P AEE
Sbjct: 62 PRAEE 66

>pdb|2KFT|A Chain A, Nmr Solution Structure Of The First Phd Finger Domain Of Human Autoimmune Regulator (Aire) In Complex With Histone H3(1-20cys) Peptide Length = 56

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 26/49 (53%), Positives = 34/49 (69%)
Query: 9  TEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCV 57
          ++++D C VC+ GGE+I CD CPRA+HL CL P L E P G W C  C+
Sbjct: 2  SKNEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCL 50

>pdb|2YSM|A Chain A, Solution Structure Of The First And Second Phd Domain From MyeloidLYMPHOID OR MIXED-Lineage Leukemia Protein 3 Homolog Length = 111

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 50/113 (44%), Gaps = 26/113 (23%)
Query: 15  CEVCQQGGEII---LCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPETASPPAEE 71
           C VC   G+++    C TC + YH  CLD  +       W CP C               
Sbjct: 10  CAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPEC--------------- 54
Query: 72  VKEKEVLCAKCKSPGD--QFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKC 122
                 +C  CK  G+  + L+C+TC+  YH  CL  P+   +PT+GWKC  C
Sbjct: 55  -----KVCQNCKQSGEDSKMLVCDTCDKGYHTFCL-QPVMKSVPTNGWKCKNC 101

>pdb|3U5M|A Chain A, Crystal Structure Of Trim33 Phd-Bromo In The Free State Length = 207

Iteration: 1
 Score = 55.8 bits (133), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 40/78 (51%)
Query: 11 HQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPETASPPAE 70
          ++D+C VCQ GG+++ C+ CP+ +HL C  P L   P G W C  C   G PE       
Sbjct: 6  NEDWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGKPEVEYDCDN 65
Query: 71 EVKEKEVLCAKCKSPGDQ 88
              K+   A+  SP DQ
Sbjct: 66 LQHSKKGKTAQGLSPVDQ 83

>pdb|3O33|A Chain A, Crystal Structure Of Trim24 Phd-Bromo In The Free State Length = 184

Iteration: 1
 Score = 55.8 bits (133), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 32/54 (59%)
Query: 11 HQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPET 64
          ++D+C VCQ GGE++ C+ CP+ +HL C  P L   P G+W C  C     PE 
Sbjct: 3  NEDWCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSKPEV 56

>pdb|4GND|A Chain A, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains Length = 107

Iteration: 1
 Score = 52.8 bits (125), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 39/59 (66%), Gaps = 8/59 (13%)
Query: 2  SHIQDLQTE----HQDYCEVCQQGGEIILCDT--CPRAYHLCCLDPELDETPEGKWSCP 54
          S+ + ++TE    H+DYC  C  GGE+++CD   CP+AYHL CL+  L + P GKW CP
Sbjct: 1  SNARKIKTEPKQMHEDYCFQCGDGGELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECP 57

>pdb|1F62|A Chain A, Wstf-Phd Length = 51

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 24/45 (53%), Positives = 32/45 (71%), Gaps = 3/45 (6%)
Query: 15 CEVCQQGGE---IILCDTCPRAYHLCCLDPELDETPEGKWSCPRC 56
          C+VC++ GE   +ILCD C +A+HL CL P L E P+G+W CP C
Sbjct: 3  CKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPAC 47

>pdb|2E6R|A Chain A, Solution Structure Of The Phd Domain In Smcy Protein Length = 92

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 15 CEVCQQGGE---IILCDTCPRAYHLCCLDPELDETPEGKWSCPRCV 57
          C+VC +G E   ++ CD C   YH+ CL P L E P G W CP+C+
Sbjct: 19 CQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCI 64

>pdb|2KWJ|A Chain A, Solution Structures Of The Double Phd Fingers Of Human Transcriptional Protein Dpf3 Bound To A Histone Peptide Containing Acetylation At Lysine 14 Length = 114

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 15  CEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRC 56
           C   +   +++ CD C R YH+ CL+P + E PEG WSC  C
Sbjct: 64  CGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLC 105

>pdb|2RO1|A Chain A, Nmr Solution Structures Of Human Kap1 Phd Finger-Bromodomain Length = 189

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 15 CEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRC 56
          C VCQ+ G++++C+ C   +HL C  P L + P  +WSC  C
Sbjct: 5  CRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLC 46

>pdb|1FP0|A Chain A, Solution Structure Of The Phd Domain From The Kap-1 Corepressor Length = 88

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 14 YCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRC 56
           C VCQ+ G++++C+ C   +HL C  P L + P  +WSC  C
Sbjct: 27 ICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLC 69

>pdb|2E6S|A Chain A, Solution Structure Of The Phd Domain In Ring Finger Protein 107 Length = 77

Iteration: 1
 Score = 39.7 bits (91), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 19/36 (52%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 25 ILCDTCPRAYHLCCLDPELDETPEGK-WSCPRCVSD 59
          +LCD C  AYH+ CL+P LD+ PE + W CP C +D
Sbjct: 42 LLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKTD 77

>pdb|3ASK|A Chain A, Structure Of Uhrf1 In Complex With Histone Tail Length = 226

Iteration: 1
 Score = 39.3 bits (90), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 25  ILCDTCPRAYHLCCLDPELDETP-EGKWSCPRCVSDG 60
           ++CD C  A+H+ CLDP L   P E +W CP C +D 
Sbjct: 190 LMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRNDA 226

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	145
1xwh_A	66	Autoimmune regulator; PHD domain, Zn binding domai	1e-17
1xwh_A	66	Autoimmune regulator; PHD domain, Zn binding domai	1e-05
2l5u_A	61	Chromodomain-helicase-DNA-binding protein 4; CHD4,	2e-17
2l5u_A	61	Chromodomain-helicase-DNA-binding protein 4; CHD4,	2e-05
2puy_A	60	PHD finger protein 21A; PHD finger, histone CODE,	4e-17
2puy_A	60	PHD finger protein 21A; PHD finger, histone CODE,	2e-06
2yql_A	56	PHD finger protein 21A; PHD domain, structural gen	8e-17
2yql_A	56	PHD finger protein 21A; PHD domain, structural gen	8e-06
1mm2_A	61	MI2-beta; PHD, zinc finger, protein scaffold, DNA	4e-16
1mm2_A	61	MI2-beta; PHD, zinc finger, protein scaffold, DNA	3e-08
1fp0_A	88	KAP-1 corepressor; PHD domain, C3HC4 type zinc bin	7e-16
1fp0_A	88	KAP-1 corepressor; PHD domain, C3HC4 type zinc bin	2e-06
2ro1_A	189	Transcription intermediary factor 1-beta; KAP, TIF	2e-14
2ro1_A	189	Transcription intermediary factor 1-beta; KAP, TIF	7e-06
2ysm_A	111	Myeloid/lymphoid or mixed-lineage leukemia protein	6e-14
2ysm_A	111	Myeloid/lymphoid or mixed-lineage leukemia protein	2e-07
3o36_A	184	Transcription intermediary factor 1-alpha; TRIM24,	7e-14
3u5n_A	207	E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b	2e-13
3u5n_A	207	E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b	9e-04
1f62_A	51	Transcription factor WSTF; Zn-finger; NMR {Homo sa	2e-11
1f62_A	51	Transcription factor WSTF; Zn-finger; NMR {Homo sa	9e-05
2e6r_A	92	Jumonji/ARID domain-containing protein 1D; PHD dom	2e-11
2e6r_A	92	Jumonji/ARID domain-containing protein 1D; PHD dom	2e-05
3ask_A	226	E3 ubiquitin-protein ligase UHRF1; histone reader	9e-11
3ask_A	226	E3 ubiquitin-protein ligase UHRF1; histone reader	2e-07
2e6s_A	77	E3 ubiquitin-protein ligase UHRF2; PHD domain, str	3e-10
2e6s_A	77	E3 ubiquitin-protein ligase UHRF2; PHD domain, str	1e-04
2lbm_A	142	Transcriptional regulator ATRX; metal binding prot	3e-10
2lbm_A	142	Transcriptional regulator ATRX; metal binding prot	1e-08
3ql9_A	129	Transcriptional regulator ATRX; zinc finger, trans	1e-09
3ql9_A	129	Transcriptional regulator ATRX; zinc finger, trans	3e-09
3v43_A	112	Histone acetyltransferase KAT6A; MOZ, PHD finger,	5e-09
2kwj_A	114	Zinc finger protein DPF3; acetyl-lysine, transcrip	7e-09
2kwj_A	114	Zinc finger protein DPF3; acetyl-lysine, transcrip	1e-08
3asl_A	70	E3 ubiquitin-protein ligase UHRF1; histone reader	2e-08
2k16_A	75	Transcription initiation factor TFIID subunit 3; p	3e-08
1wev_A	88	Riken cDNA 1110020M19; structural genomics, PHD do	7e-08
2pv0_B	386	DNA (cytosine-5)-methyltransferase 3-like; DNMT3L,	1e-07
3shb_A	77	E3 ubiquitin-protein ligase UHRF1; unmodified hist	1e-07
3shb_A	77	E3 ubiquitin-protein ligase UHRF1; unmodified hist	5e-04
3a1b_A	159	DNA (cytosine-5)-methyltransferase 3A, histone H3;	2e-07
2ri7_A	174	Nucleosome-remodeling factor subunit BPTF; zinc fi	5e-07
2yt5_A	66	Metal-response element-binding transcription facto	8e-07
2yt5_A	66	Metal-response element-binding transcription facto	4e-04
1w7p_D	566	VPS36P, YLR417W; ESCRT-II complex, endosomal prote	7e-06
2ku3_A	71	Bromodomain-containing protein 1; PHD finger, chro	1e-05
2l43_A	88	N-teminal domain from histone H3.3, linker, PHD1 f	5e-05

>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A Length = 66

 Score = 71.3 bits (175), Expect = 1e-17
 Identities = 28/65 (43%), Positives = 36/65 (55%)

Query: 6  DLQTEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPETA 65
           +  +++D C VC+ GGE+I CD CPRA+HL CL P L E P G W C  C+     E  
Sbjct: 2  AMAQKNEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQEVQ 61

Query: 66 SPPAE 70
              E
Sbjct: 62 PRAEE 66

>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A Length = 66

 Score = 40.1 bits (94), Expect = 1e-05
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 79  CAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCSCPPLP 128
           CA C+  G+  + C+ C  ++H  CL  P+  E+P+  W+C  C    + 
Sbjct: 11  CAVCRDGGE-LICCDGCPRAFHLACLSPPLR-EIPSGTWRCSSCLQATVQ 58

>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens} Length = 61

 Score = 70.5 bits (173), Expect = 2e-17
 Identities = 40/53 (75%), Positives = 48/53 (90%)

Query: 8  QTEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDG 60
          +T+HQDYCEVCQQGGEIILCDTCPRAYH+ CLDP++++ PEGKWSCP C  +G
Sbjct: 7  ETDHQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKEG 59

>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens} Length = 61

 Score = 39.3 bits (92), Expect = 2e-05
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 67  PPAEEVKEKEVLCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCSCPP 126
           P      + +  C  C+  G + +LC+TC  +YH  CL   +E + P   W CP C    
Sbjct: 2   PLGSYETDHQDYCEVCQQ-GGEIILCDTCPRAYHMVCLDPDME-KAPEGKWSCPHCEKEG 59

Query: 127 L 127
           +
Sbjct: 60  I 60

>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens} Length = 60

 Score = 69.8 bits (171), Expect = 4e-17
 Identities = 26/59 (44%), Positives = 37/59 (62%)

Query: 8  QTEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPETAS 66
             H+D+C VC++ G++++CDTC R YHL CLDP L   P+G W CPRC      +  +
Sbjct: 1  HMIHEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQMLKKEEA 59

>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens} Length = 60

 Score = 41.6 bits (98), Expect = 2e-06
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 78  LCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCSCPPLP 128
            C+ C+    Q L+C+TC+  YH  CL  P++  +P   W CP+C    L 
Sbjct: 7   FCSVCRK-SGQLLMCDTCSRVYHLDCLDPPLK-TIPKGMWICPRCQDQMLK 55

>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 56

 Score = 68.5 bits (168), Expect = 8e-17
 Identities = 26/51 (50%), Positives = 36/51 (70%)

Query: 6  DLQTEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRC 56
             + H+D+C VC++ G++++CDTC R YHL CLDP L   P+G W CPRC
Sbjct: 3  SGSSGHEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRC 53

>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 56

 Score = 40.0 bits (94), Expect = 8e-06
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 70  EEVKEKEVLCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKC 122
                 E  C+ C+    Q L+C+TC+  YH  CL  P++  +P   W CP+C
Sbjct: 3   SGSSGHEDFCSVCRK-SGQLLMCDTCSRVYHLDCLDPPLK-TIPKGMWICPRC 53

>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A Length = 61

 Score = 67.0 bits (164), Expect = 4e-16
 Identities = 26/53 (49%), Positives = 35/53 (66%)

Query: 10 EHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPP 62
           H ++C VC+ GGE++ CDTCP +YH+ CL+P L E P G+W CPRC      
Sbjct: 7  HHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPALK 59

>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A Length = 61

 Score = 46.6 bits (111), Expect = 3e-08
 Identities = 26/52 (50%), Positives = 32/52 (61%), Gaps = 2/52 (3%)

Query: 79  CAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCSCPPLPGK 130
           C  CK  G+  L C+TC  SYH HCL  P+  E+P   W CP+C+CP L GK
Sbjct: 12  CRVCKDGGE-LLCCDTCPSSYHIHCLNPPLP-EIPNGEWLCPRCTCPALKGK 61

>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2 Length = 88

 Score = 67.3 bits (164), Expect = 7e-16
 Identities = 18/69 (26%), Positives = 30/69 (43%)

Query: 6  DLQTEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPETA 65
              +    C VCQ+ G++++C+ C   +HL C  P L + P  +WSC  C      +  
Sbjct: 19 GTLDDSATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPDLKEE 78

Query: 66 SPPAEEVKE 74
              +  K 
Sbjct: 79 DVDLQACKL 87

>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2 Length = 88

 Score = 42.6 bits (100), Expect = 2e-06
 Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 2/65 (3%)

Query: 66  SPPAEEVKEKEVLCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCSCP 125
                 + +   +C  C+ PGD  ++C  C   +H  C    ++ ++P   W C  C   
Sbjct: 15  IDEFGTLDDSATICRVCQKPGD-LVMCNQCEFCFHLDCHLPALQ-DVPGEEWSCSLCHVL 72

Query: 126 PLPGK 130
           P   +
Sbjct: 73  PDLKE 77

>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens} Length = 189

 Score = 66.0 bits (160), Expect = 2e-14
 Identities = 20/88 (22%), Positives = 32/88 (36%)

Query: 13  DYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPETASPPAEEV 72
             C VCQ+ G++++C+ C   +HL C  P L + P  +WSC  C      +         
Sbjct: 3   TICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPDLKEEDGSLSLD 62

Query: 73  KEKEVLCAKCKSPGDQFLLCETCNGSYH 100
                      SP +Q          + 
Sbjct: 63  GADSTGVVAKLSPANQRKCERVLLALFC 90

>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens} Length = 189

 Score = 42.9 bits (100), Expect = 7e-06
 Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 78  LCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCSCPPLPGKLEDM 134
           +C  C+ PGD  ++C  C   +H  C    ++ ++P   W C  C   P   + +  
Sbjct: 4   ICRVCQKPGD-LVMCNQCEFCFHLDCHLPALQ-DVPGEEWSCSLCHVLPDLKEEDGS 58

>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Length = 111

 Score = 62.7 bits (152), Expect = 6e-14
 Identities = 35/121 (28%), Positives = 47/121 (38%), Gaps = 26/121 (21%)

Query: 8   QTEHQDYCEVCQQGGE---IILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPET 64
                  C VC   G+      C TC + YH  CLD  +       W CP C        
Sbjct: 3   SGSSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECKV------ 56

Query: 65  ASPPAEEVKEKEVLCAKCKSPGD--QFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKC 122
                         C  CK  G+  + L+C+TC+  YH  CL   ++  +PT+GWKC  C
Sbjct: 57  --------------CQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMK-SVPTNGWKCKNC 101

Query: 123 S 123
            
Sbjct: 102 R 102

>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Length = 111

 Score = 46.1 bits (109), Expect = 2e-07
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 8   QTEHQDYCEVCQQGGE---IILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVS 58
           Q      C+ C+Q GE   +++CDTC + YH  CL P +   P   W C  C  
Sbjct: 50  QCPECKVCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRI 103

>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A Length = 184

 Score = 64.2 bits (156), Expect = 7e-14
 Identities = 33/109 (30%), Positives = 50/109 (45%), Gaps = 6/109 (5%)

Query: 11  HQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPE---TASP 67
           ++D+C VCQ GGE++ C+ CP+ +HL C  P L   P G+W C  C     PE       
Sbjct: 3   NEDWCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSKPEVEYDCDA 62

Query: 68  PAEEVKEKEVLCAKCKSPGDQFLLCETCNGSY-HPHCLP--DPIEGELP 113
           P+   ++K+       +P D+          Y H   L   DP+   +P
Sbjct: 63  PSHNSEKKKTEGLVKLTPIDKRKCERLLLFLYCHEMSLAFQDPVPLTVP 111

>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A* Length = 207

 Score = 63.8 bits (154), Expect = 2e-13
 Identities = 30/96 (31%), Positives = 41/96 (42%)

Query: 8   QTEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPETASP 67
              ++D+C VCQ GG+++ C+ CP+ +HL C  P L   P G W C  C   G PE    
Sbjct: 3   DDPNEDWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGKPEVEYD 62

Query: 68  PAEEVKEKEVLCAKCKSPGDQFLLCETCNGSYHPHC 103
                  K+   A+  SP DQ          Y    
Sbjct: 63  CDNLQHSKKGKTAQGLSPVDQRKCERLLLYLYCHEL 98

>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A* Length = 207

 Score = 36.8 bits (84), Expect = 9e-04
 Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 2/57 (3%)

Query: 74  EKEVLCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCSCPPLPGK 130
             E  CA C++ GD  L CE C   +H  C    +    P+  W C  C     P  
Sbjct: 5   PNEDWCAVCQNGGD-LLCCEKCPKVFHLTCHVPTLL-SFPSGDWICTFCRDIGKPEV 59

>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2 Length = 51

 Score = 54.6 bits (132), Expect = 2e-11
 Identities = 24/46 (52%), Positives = 32/46 (69%), Gaps = 3/46 (6%)

Query: 15 CEVCQQGGE---IILCDTCPRAYHLCCLDPELDETPEGKWSCPRCV 57
          C+VC++ GE   +ILCD C +A+HL CL P L E P+G+W CP C 
Sbjct: 3  CKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQ 48

>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2 Length = 51

 Score = 37.3 bits (87), Expect = 9e-05
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 3/47 (6%)

Query: 79  CAKCKSPGD--QFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCS 123
           C  C+  G+  + +LC+ CN ++H  CL   +  E+P   W+CP C 
Sbjct: 3   CKVCRKKGEDDKLILCDECNKAFHLFCLRPALY-EVPDGEWQCPACQ 48

>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 92

 Score = 55.3 bits (133), Expect = 2e-11
 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 4/79 (5%)

Query: 8  QTEHQDYCEVCQQGGE---IILCDTCPRAYHLCCLDPELDETPEGKWSCPRCV-SDGPPE 63
          Q      C+VC +G E   ++ CD C   YH+ CL P L E P G W CP+C+ ++    
Sbjct: 12 QFIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILAECKQP 71

Query: 64 TASPPAEEVKEKEVLCAKC 82
            +   E+  ++  L    
Sbjct: 72 PEAFGFEQATQEYSLSGPS 90

>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 92

 Score = 39.5 bits (92), Expect = 2e-05
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 3/60 (5%)

Query: 76  EVLCAKCKSPGD--QFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCSCPPLPGKLED 133
             +C  C    +  + L C+ C+ +YH  CL  P+  E+P   W+CPKC         E 
Sbjct: 16  SYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLP-EIPRGIWRCPKCILAECKQPPEA 74

>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens} Length = 226

 Score = 56.7 bits (136), Expect = 9e-11
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 4/50 (8%)

Query: 15  CEVCQQG---GEIILCDTCPRAYHLCCLDPELDETP-EGKWSCPRCVSDG 60
           C +C       + ++CD C  A+H+ CLDP L   P E +W CP C +D 
Sbjct: 177 CHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRNDA 226

>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens} Length = 226

 Score = 47.8 bits (113), Expect = 2e-07
 Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 11/86 (12%)

Query: 40  DPELDETPEGKWSCPRCVSDGPPETASPPAEEVKEKEVLCAKCKSPGD--QFLLCETCNG 97
              + + P  + S P C                  +   C  C    D  + L+C+ C+ 
Sbjct: 145 GSPMVDNPMRRKSGPSCKH-------CKDDVNRLCRVCACHLCGGRQDPDKQLMCDECDM 197

Query: 98  SYHPHCLPDPIEGELPTSG-WKCPKC 122
           ++H +CL  P+   +P+   W CP+C
Sbjct: 198 AFHIYCLDPPLS-SVPSEDEWYCPEC 222

>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 77

 Score = 52.1 bits (125), Expect = 3e-10
 Identities = 24/54 (44%), Positives = 29/54 (53%), Gaps = 4/54 (7%)

Query: 10 EHQDYCEVCQQGGE---IILCDTCPRAYHLCCLDPELDETPEG-KWSCPRCVSD 59
           H   C VC    E    +LCD C  AYH+ CL+P LD+ PE   W CP C +D
Sbjct: 24 CHSCSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKTD 77

>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 77

 Score = 37.5 bits (87), Expect = 1e-04
 Identities = 21/79 (26%), Positives = 27/79 (34%), Gaps = 12/79 (15%)

Query: 47  PEGKWSCPRCVSDGPPETASPPAEEVKEKEVLCAKCKSPGD--QFLLCETCNGSYHPHCL 104
                 C  C  D           E K     C  C    +    LLC+ CN +YH +CL
Sbjct: 7   GRNDTECDLCGGD----------PEKKCHSCSCRVCGGKHEPNMQLLCDECNVAYHIYCL 56

Query: 105 PDPIEGELPTSGWKCPKCS 123
             P++       W CP C 
Sbjct: 57  NPPLDKVPEEEYWYCPSCK 75

>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A Length = 142

 Score = 54.0 bits (129), Expect = 3e-10
 Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 7/56 (12%)

Query: 8   QTEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDE-------TPEGKWSCPRC 56
                + C  C +GG +I CD C  A+   C+   L             +W C  C
Sbjct: 59  SDGMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYIC 114

>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A Length = 142

 Score = 49.8 bits (118), Expect = 1e-08
 Identities = 19/127 (14%), Positives = 36/127 (28%), Gaps = 10/127 (7%)

Query: 19  QQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPETASPPAEEVKEKEVL 78
                I+ C  C +  +    D            C  C      +  S    +    +  
Sbjct: 9   DGLHGIVSCTACGQQVNHFQKDSIYRHPSLQVLICKNCFKYYMSDDIS---RDSDGMDEQ 65

Query: 79  CAKCKSPGDQFLLCETCNGSYHPHCLPDPI------EGELPTSGWKCPKCSCPPLPGKLE 132
           C  C   G+  + C+ C+ ++   C+   +            + W C  C   PL   + 
Sbjct: 66  CRWCAEGGN-LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPEPLLDLVT 124

Query: 133 DMASLLR 139
              S+  
Sbjct: 125 ACNSVFE 131

>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A Length = 129

 Score = 52.1 bits (124), Expect = 1e-09
 Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 7/56 (12%)

Query: 8   QTEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDE-------TPEGKWSCPRC 56
                + C  C +GG +I CD C  A+   C+   L             +W C  C
Sbjct: 53  SDGMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYIC 108

>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A Length = 129

 Score = 50.9 bits (121), Expect = 3e-09
 Identities = 20/128 (15%), Positives = 37/128 (28%), Gaps = 10/128 (7%)

Query: 22  GEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPETASPPAEEVKEKEVLCAK 81
             I+ C  C +  +    D            C  C      +  S    +    +  C  
Sbjct: 6   MGIVSCTACGQQVNHFQKDSIYRHPSLQVLICKNCFKYYMSDDIS---RDSDGMDEQCRW 62

Query: 82  CKSPGDQFLLCETCNGSYHPHCLPDPI------EGELPTSGWKCPKCSCPPLPGKLEDMA 135
           C   G+  + C+ C+ ++   C+   +            + W C  C   PL   +    
Sbjct: 63  CAEGGN-LICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPEPLLDLVTACN 121

Query: 136 SLLRLPRQ 143
           S+     Q
Sbjct: 122 SVYENLEQ 129

>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Length = 112

 Score = 50.1 bits (119), Expect = 5e-09
 Identities = 26/125 (20%), Positives = 37/125 (29%), Gaps = 24/125 (19%)

Query: 8   QTEHQDYCEVCQQGG---------EIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVS 58
             E    C  C             E+I C  C  + H  CL    + T   K    +C+ 
Sbjct: 1   HMEPIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIE 60

Query: 59  DGPPETASPPAEEVKEKEVLCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWK 118
                +              C       D  L C++C+  +H  C  DP    +P   W 
Sbjct: 61  CKTCSS--------------CRDQGKNADNMLFCDSCDRGFHMECC-DPPLTRMPKGMWI 105

Query: 119 CPKCS 123
           C  C 
Sbjct: 106 CQICR 110

>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Length = 114

 Score = 49.7 bits (118), Expect = 7e-09
 Identities = 19/53 (35%), Positives = 29/53 (54%)

Query: 5   QDLQTEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCV 57
           Q ++ +    C   +   +++ CD C R YH+ CL+P + E PEG WSC  C 
Sbjct: 54  QCIECKSCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCW 106

>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Length = 114

 Score = 49.3 bits (117), Expect = 1e-08
 Identities = 31/122 (25%), Positives = 45/122 (36%), Gaps = 30/122 (24%)

Query: 14  YCEVCQQGG----------EIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPE 63
           YC+ C  G           E++ C  C R+ H  CL   L+ T   K    +C+      
Sbjct: 3   YCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCI------ 56

Query: 64  TASPPAEEVKEKEVLCAKCKSPGD--QFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPK 121
                      +   C  C +  +  Q L C+ C+  YH +CL  P+  E P   W C  
Sbjct: 57  -----------ECKSCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVA-EPPEGSWSCHL 104

Query: 122 CS 123
           C 
Sbjct: 105 CW 106

>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B Length = 70

 Score = 47.1 bits (112), Expect = 2e-08
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 4/50 (8%)

Query: 15 CEVCQQGGE---IILCDTCPRAYHLCCLDPELDETP-EGKWSCPRCVSDG 60
          C +C    +    ++CD C  A+H+ CLDP L   P E +W CP C +D 
Sbjct: 21 CHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRNDA 70

>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* Length = 75

 Score = 47.2 bits (112), Expect = 3e-08
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 3/54 (5%)

Query: 14 YCEVCQQ---GGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPET 64
           C  C +   G  +I CD C   YH  C+        E +W CP+C +    + 
Sbjct: 20 ICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKKDK 73

>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2 Length = 88

 Score = 46.6 bits (110), Expect = 7e-08
 Identities = 17/72 (23%), Positives = 24/72 (33%), Gaps = 9/72 (12%)

Query: 6  DLQTEHQDYCEVCQQG-----GEIILCDTCPRAYHLCCLDPELDET----PEGKWSCPRC 56
          D   E    C VC+Q       +++ C  C   YH  C  P++ +     P   W C RC
Sbjct: 10 DFAMEMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARC 69

Query: 57 VSDGPPETASPP 68
                      
Sbjct: 70 TRQMKRMAQKNQ 81

>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B* Length = 386

 Score = 48.4 bits (114), Expect = 1e-07
 Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 8/54 (14%)

Query: 11  HQDYCEVCQQGGEIILCD--TCPRAYHLCCLDPELDE------TPEGKWSCPRC 56
           +Q YC +C  G  +++C    C R Y   C+D  +             W C  C
Sbjct: 92  YQSYCSICCSGETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLC 145

>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens} Length = 77

 Score = 45.2 bits (107), Expect = 1e-07
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 4/49 (8%)

Query: 15 CEVCQQG---GEIILCDTCPRAYHLCCLDPELDETP-EGKWSCPRCVSD 59
          C +C       + ++CD C  A+H+ CLDP L   P E +W CP C +D
Sbjct: 29 CHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 77

>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens} Length = 77

 Score = 36.0 bits (83), Expect = 5e-04
 Identities = 19/82 (23%), Positives = 29/82 (35%), Gaps = 12/82 (14%)

Query: 43  LDETPEGKWSCPRCVSDGPPETASPPAEEVKEKEVLCAKCKSPGD--QFLLCETCNGSYH 100
           L        SC  C  D               +   C  C    D  + L+C+ C+ ++H
Sbjct: 3   LGSPEFSGPSCKHCKDD----------VNRLCRVCACHLCGGRQDPDKQLMCDECDMAFH 52

Query: 101 PHCLPDPIEGELPTSGWKCPKC 122
            +CL  P+        W CP+C
Sbjct: 53  IYCLDPPLSSVPSEDEWYCPEC 74

>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A* Length = 159

 Score = 46.7 bits (110), Expect = 2e-07
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 8/54 (14%)

Query: 11  HQDYCEVCQQGGEIILCDT--CPRAYHLCCLDPELDE------TPEGKWSCPRC 56
           +Q YC +C  G E+++C    C R + + C+D  +          E  W+C  C
Sbjct: 78  YQSYCTICCGGREVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMC 131

>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* Length = 174

 Score = 45.6 bits (108), Expect = 5e-07
 Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 6/73 (8%)

Query: 9  TEHQDYCEVCQQGGE----IILCDTCPRAYHLCCLD-PELDETPEGKWSCPRCVSDGPPE 63
          ++ + YC +C+   +     I CD C   YH  C+   + +     ++ CP+C S     
Sbjct: 5  SDTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQSTEDAM 63

Query: 64 TASPPAEEVKEKE 76
          T   P  E   + 
Sbjct: 64 TVLTPLTEKDYEG 76

>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus} Length = 66

 Score = 42.9 bits (101), Expect = 8e-07
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 8/51 (15%)

Query: 15 CEVCQQG-----GEIILCDTCPRAYHLCCLDPELDE---TPEGKWSCPRCV 57
          C +CQ+       E+++CD C + YH  C  P +D      + KW C +CV
Sbjct: 9  CTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCV 59

>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus} Length = 66

 Score = 35.6 bits (82), Expect = 4e-04
 Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 6/53 (11%)

Query: 76  EVLCAKCKS----PGDQFLLCETCNGSYHPHCLPDPIEGEL--PTSGWKCPKC 122
             +C  C+       ++ ++C+ C   YH  C    I+  +      W C +C
Sbjct: 6   SGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQC 58

>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 Length = 566

 Score = 43.5 bits (101), Expect = 7e-06
 Identities = 16/83 (19%), Positives = 20/83 (24%), Gaps = 3/83 (3%)

Query: 40  DPELDETPEGKWSCPRCVSDGPPETASPPAEEVKEKEVLCAKCKSPGDQFLLCETCNGSY 99
                      W CP C+     +               C  C  P D  L   + N S 
Sbjct: 107 AETASADVVSTWVCPICMVSNETQGEFTKDTLPTPI---CINCGVPADYELTKSSINCSN 163

Query: 100 HPHCLPDPIEGELPTSGWKCPKC 122
                 +P       S   CP C
Sbjct: 164 AIDPNANPQNQFGVNSENICPAC 186

>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens} Length = 71

 Score = 40.3 bits (94), Expect = 1e-05
 Identities = 17/61 (27%), Positives = 22/61 (36%), Gaps = 7/61 (11%)

Query: 3  HIQDLQTEHQDYCEVCQQGG-----EIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCV 57
          H      +    C +C  G       I+ CD C  A H  C        PEG+W C  C+
Sbjct: 7  HHMQSLIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGV--PYIPEGQWLCRHCL 64

Query: 58 S 58
           
Sbjct: 65 Q 65

>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens} Length = 88

 Score = 38.9 bits (90), Expect = 5e-05
 Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 7/54 (12%)

Query: 10 EHQDYCEVCQQGG-----EIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVS 58
          +    C +C  G       I+ CD C  A H  C        PEG+W C  C+ 
Sbjct: 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGV--PYIPEGQWLCRHCLQ 74

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	145
2ysm_A	111	Myeloid/lymphoid or mixed-lineage leukemia protein	99.94
2kwj_A	114	Zinc finger protein DPF3; acetyl-lysine, transcrip	99.9
3v43_A	112	Histone acetyltransferase KAT6A; MOZ, PHD finger,	99.89
4gne_A	107	Histone-lysine N-methyltransferase NSD3; zinc fing	99.83
1fp0_A	88	KAP-1 corepressor; PHD domain, C3HC4 type zinc bin	99.68
2l5u_A	61	Chromodomain-helicase-DNA-binding protein 4; CHD4,	99.67
1xwh_A	66	Autoimmune regulator; PHD domain, Zn binding domai	99.65
2lri_C	66	Autoimmune regulator; Zn binding protein domain, a	99.65
1mm2_A	61	MI2-beta; PHD, zinc finger, protein scaffold, DNA	99.65
1mm2_A	61	MI2-beta; PHD, zinc finger, protein scaffold, DNA	99.63
2yql_A	56	PHD finger protein 21A; PHD domain, structural gen	99.61
2puy_A	60	PHD finger protein 21A; PHD finger, histone CODE,	99.59
2lri_C	66	Autoimmune regulator; Zn binding protein domain, a	99.52
3asl_A	70	E3 ubiquitin-protein ligase UHRF1; histone reader	99.52
1f62_A	51	Transcription factor WSTF; Zn-finger; NMR {Homo sa	99.51
1wev_A	88	Riken cDNA 1110020M19; structural genomics, PHD do	99.51
3shb_A	77	E3 ubiquitin-protein ligase UHRF1; unmodified hist	99.5
2yql_A	56	PHD finger protein 21A; PHD domain, structural gen	99.5
1fp0_A	88	KAP-1 corepressor; PHD domain, C3HC4 type zinc bin	99.49
2e6s_A	77	E3 ubiquitin-protein ligase UHRF2; PHD domain, str	99.49
2e6r_A	92	Jumonji/ARID domain-containing protein 1D; PHD dom	99.48
1xwh_A	66	Autoimmune regulator; PHD domain, Zn binding domai	99.48
3u5n_A	207	E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b	99.48
3o36_A	184	Transcription intermediary factor 1-alpha; TRIM24,	99.47
3asl_A	70	E3 ubiquitin-protein ligase UHRF1; histone reader	99.45
2yt5_A	66	Metal-response element-binding transcription facto	99.45
2e6s_A	77	E3 ubiquitin-protein ligase UHRF2; PHD domain, str	99.44
2puy_A	60	PHD finger protein 21A; PHD finger, histone CODE,	99.42
2ku3_A	71	Bromodomain-containing protein 1; PHD finger, chro	99.42
2l5u_A	61	Chromodomain-helicase-DNA-binding protein 4; CHD4,	99.42
1f62_A	51	Transcription factor WSTF; Zn-finger; NMR {Homo sa	99.4
2l43_A	88	N-teminal domain from histone H3.3, linker, PHD1 f	99.39
2ro1_A	189	Transcription intermediary factor 1-beta; KAP, TIF	99.36
2e6r_A	92	Jumonji/ARID domain-containing protein 1D; PHD dom	99.34
3shb_A	77	E3 ubiquitin-protein ligase UHRF1; unmodified hist	99.33
3v43_A	112	Histone acetyltransferase KAT6A; MOZ, PHD finger,	99.31
2yt5_A	66	Metal-response element-binding transcription facto	99.28
2ysm_A	111	Myeloid/lymphoid or mixed-lineage leukemia protein	99.28
2kwj_A	114	Zinc finger protein DPF3; acetyl-lysine, transcrip	99.27
2lbm_A	142	Transcriptional regulator ATRX; metal binding prot	99.26
3o36_A	184	Transcription intermediary factor 1-alpha; TRIM24,	99.26
3ask_A	226	E3 ubiquitin-protein ligase UHRF1; histone reader	99.26
3u5n_A	207	E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b	99.25
2ro1_A	189	Transcription intermediary factor 1-beta; KAP, TIF	99.21
3ask_A	226	E3 ubiquitin-protein ligase UHRF1; histone reader	99.2
1wev_A	88	Riken cDNA 1110020M19; structural genomics, PHD do	99.19
4gne_A	107	Histone-lysine N-methyltransferase NSD3; zinc fing	99.16
2lbm_A	142	Transcriptional regulator ATRX; metal binding prot	99.15
2k16_A	75	Transcription initiation factor TFIID subunit 3; p	99.15
2l43_A	88	N-teminal domain from histone H3.3, linker, PHD1 f	99.12
3ql9_A	129	Transcriptional regulator ATRX; zinc finger, trans	99.09
2k16_A	75	Transcription initiation factor TFIID subunit 3; p	99.08
2ku3_A	71	Bromodomain-containing protein 1; PHD finger, chro	99.06
1wen_A	71	Inhibitor of growth family, member 4; ING1-like pr	99.05
2lv9_A	98	Histone-lysine N-methyltransferase MLL5; zinc fing	99.02
2vnf_A	60	ING 4, P29ING4, inhibitor of growth protein 4; ace	99.0
1wen_A	71	Inhibitor of growth family, member 4; ING1-like pr	98.99
3c6w_A	59	P28ING5, inhibitor of growth protein 5; chromatin,	98.98
2g6q_A	62	Inhibitor of growth protein 2; protein-peptide com	98.93
1weu_A	91	Inhibitor of growth family, member 4; structural g	98.91
1weu_A	91	Inhibitor of growth family, member 4; structural g	98.9
2lv9_A	98	Histone-lysine N-methyltransferase MLL5; zinc fing	98.84
3ql9_A	129	Transcriptional regulator ATRX; zinc finger, trans	98.83
2jmi_A	90	Protein YNG1, ING1 homolog 1; PHD, histone, recogn	98.79
3c6w_A	59	P28ING5, inhibitor of growth protein 5; chromatin,	98.75
2jmi_A	90	Protein YNG1, ING1 homolog 1; PHD, histone, recogn	98.73
2g6q_A	62	Inhibitor of growth protein 2; protein-peptide com	98.71
2vnf_A	60	ING 4, P29ING4, inhibitor of growth protein 4; ace	98.71
4bbq_A	117	Lysine-specific demethylase 2A; oxidoreductase, ub	98.67
1we9_A	64	PHD finger family protein; structural genomics, PH	98.59
1wil_A	89	KIAA1045 protein; ring finger domain, structural g	98.57
1wee_A	72	PHD finger family protein; structural genomics, PH	98.55
3o70_A	68	PHD finger protein 13; PHF13, structural genomics	98.54
1wep_A	79	PHF8; structural genomics, PHD domain, riken struc	98.41
1x4i_A	70	Inhibitor of growth protein 3; structural genomics	98.4
2kgg_A	52	Histone demethylase jarid1A; PHD finger, histone m	98.33
1x4i_A	70	Inhibitor of growth protein 3; structural genomics	98.32
2vpb_A	65	Hpygo1, pygopus homolog 1; gene regulation, WNT si	98.19
1we9_A	64	PHD finger family protein; structural genomics, PH	98.18
3o7a_A	52	PHD finger protein 13 variant; PHF13, zinc finger,	98.17
1wem_A	76	Death associated transcription factor 1; structura	98.15
3o70_A	68	PHD finger protein 13; PHF13, structural genomics	98.11
2xb1_A	105	Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro;	98.11
2rsd_A	68	E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant	98.08
3kqi_A	75	GRC5, PHD finger protein 2; metal-binding, zinc-fi	98.06
1wee_A	72	PHD finger family protein; structural genomics, PH	98.0
1wew_A	78	DNA-binding family protein; structural genomics, P	97.99
2ri7_A	174	Nucleosome-remodeling factor subunit BPTF; zinc fi	97.9
1wew_A	78	DNA-binding family protein; structural genomics, P	97.9
2ri7_A	174	Nucleosome-remodeling factor subunit BPTF; zinc fi	97.85
2rsd_A	68	E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant	97.85
2vpb_A	65	Hpygo1, pygopus homolog 1; gene regulation, WNT si	97.84
2xb1_A	105	Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro;	97.83
1wil_A	89	KIAA1045 protein; ring finger domain, structural g	97.78
1wem_A	76	Death associated transcription factor 1; structura	97.75
2kgg_A	52	Histone demethylase jarid1A; PHD finger, histone m	97.62
1wep_A	79	PHF8; structural genomics, PHD domain, riken struc	97.6
3rsn_A	177	SET1/ASH2 histone methyltransferase complex subun;	97.6
3o7a_A	52	PHD finger protein 13 variant; PHF13, zinc finger,	97.49
3lqh_A	183	Histone-lysine N-methyltransferase MLL; PHD finger	97.31
3pur_A	528	Lysine-specific demethylase 7 homolog; oxidoreduct	97.24
3kqi_A	75	GRC5, PHD finger protein 2; metal-binding, zinc-fi	97.05
3a1b_A	159	DNA (cytosine-5)-methyltransferase 3A, histone H3;	97.04
3kv5_D	488	JMJC domain-containing histone demethylation prote	96.93
3a1b_A	159	DNA (cytosine-5)-methyltransferase 3A, histone H3;	96.92
4bbq_A	117	Lysine-specific demethylase 2A; oxidoreductase, ub	96.61
3kv4_A	447	PHD finger protein 8; epigenetics, histone CODE, c	96.34
3lqh_A	183	Histone-lysine N-methyltransferase MLL; PHD finger	96.12
2ku7_A	140	MLL1 PHD3-CYP33 RRM chimeric protein; transcriptio	96.05
3pur_A	528	Lysine-specific demethylase 7 homolog; oxidoreduct	95.98
2pv0_B	386	DNA (cytosine-5)-methyltransferase 3-like; DNMT3L,	95.6
2pv0_B	386	DNA (cytosine-5)-methyltransferase 3-like; DNMT3L,	95.46
3kv5_D	488	JMJC domain-containing histone demethylation prote	94.48
3kv4_A	447	PHD finger protein 8; epigenetics, histone CODE, c	93.93
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	93.89
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	92.85
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	92.51
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	91.01
3rsn_A	177	SET1/ASH2 histone methyltransferase complex subun;	90.45
2ect_A	78	Ring finger protein 126; metal binding protein, st	90.38
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	89.79
2ku7_A	140	MLL1 PHD3-CYP33 RRM chimeric protein; transcriptio	89.57
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	89.3
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	88.39
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	88.24
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	88.0
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	87.66
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	86.84
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	86.78
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	86.38
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	86.0
2lq6_A	87	Bromodomain-containing protein 1; PHD finger, meta	85.33
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	84.48
2lq6_A	87	Bromodomain-containing protein 1; PHD finger, meta	84.35
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	83.25
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	82.86
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	82.07
1weq_A	85	PHD finger protein 7; structural genomics, PHD dom	81.43
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	81.11

>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}

Probab=99.94  E-value=1.1e-27  Score=162.86  Aligned_cols=96  Identities=36%  Similarity=1.020  Sum_probs=88.0

Q ss_pred             cccccccccccccccCce---EecCCCCCcccccccCCCCCCCCCCCeEeCccccCCCCCCCCCCCcccccccccccccC
Q psy14606          7 LQTEHQDYCEVCQQGGEI---ILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPETASPPAEEVKEKEVLCAKCK   83 (145)
Q Consensus         7 ~~~~~~~~C~~C~~~g~l---~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~~~~~~~~~~~~~~~~~~~C~vC~   83 (145)
                      ....++++|.+|+++|++   |.|+.|+++||+.|+++++..++++.|+|+.|+                    +|.+|+
T Consensus         2 s~~~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~--------------------~C~~C~   61 (111)
T 2ysm_A            2 SSGSSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK--------------------VCQNCK   61 (111)
T ss_dssp             CCCCCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC--------------------CCTTTC
T ss_pred             CCCCCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC--------------------cccccC
Confidence            345789999999998876   999999999999999998888888999999998                    799999


Q ss_pred             CCC--CCeecCCCCCCCCCCCCCCCCCCCCCCCCceeCCCCC
Q psy14606         84 SPG--DQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCS  123 (145)
Q Consensus        84 ~~g--~~ll~C~~C~~~yH~~Cl~~~~~~~~p~~~w~C~~C~  123 (145)
                      ..+  ..||.|+.|+++||.+||+|++. ++|.+.|+|+.|.
T Consensus        62 ~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~-~~P~g~W~C~~C~  102 (111)
T 2ysm_A           62 QSGEDSKMLVCDTCDKGYHTFCLQPVMK-SVPTNGWKCKNCR  102 (111)
T ss_dssp             CCSCCTTEEECSSSCCEEEGGGSSSCCS-SCCSSCCCCHHHH
T ss_pred             ccCCCCCeeECCCCCcHHhHHhcCCccc-cCCCCCcCCcCCc
Confidence            877  36999999999999999999999 9999999999994

>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*

Probab=99.90  E-value=3.2e-25  Score=151.33  Aligned_cols=90  Identities=37%  Similarity=0.949  Sum_probs=79.1

Q ss_pred             ccccccccc----------CceEecCCCCCcccccccCCCCC---CCCCCCeEeCccccCCCCCCCCCCCcccccccccc
Q psy14606         13 DYCEVCQQG----------GEIILCDTCPRAYHLCCLDPELD---ETPEGKWSCPRCVSDGPPETASPPAEEVKEKEVLC   79 (145)
Q Consensus        13 ~~C~~C~~~----------g~l~~Cd~C~~~~H~~Cl~p~~~---~~p~~~W~C~~C~~~~~~~~~~~~~~~~~~~~~~C   79 (145)
                      ++|.+|.++          ++||.|++|+++||.+||++...   .++++.|+|+.|+                    .|
T Consensus         2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~--------------------~C   61 (114)
T 2kwj_A            2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK--------------------SC   61 (114)
T ss_dssp             CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC--------------------CC
T ss_pred             CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccC--------------------cc
Confidence            578888764          38999999999999999997643   4677899999997                    69


Q ss_pred             cccCCCC--CCeecCCCCCCCCCCCCCCCCCCCCCCCCceeCCCCC
Q psy14606         80 AKCKSPG--DQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCS  123 (145)
Q Consensus        80 ~vC~~~g--~~ll~C~~C~~~yH~~Cl~~~~~~~~p~~~w~C~~C~  123 (145)
                      .+|+..+  +.||.|+.|+++||.+||+|++. ++|.++|+|+.|.
T Consensus        62 ~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~-~~P~g~W~C~~C~  106 (114)
T 2kwj_A           62 ILCGTSENDDQLLFCDDCDRGYHMYCLNPPVA-EPPEGSWSCHLCW  106 (114)
T ss_dssp             TTTTCCTTTTTEEECSSSCCEEETTTSSSCCS-SCCSSCCCCHHHH
T ss_pred             CcccccCCCCceEEcCCCCccccccccCCCcc-CCCCCCeECcccc
Confidence            9999853  48999999999999999999999 9999999999985

>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A

Probab=99.89  E-value=1.5e-24  Score=147.56  Aligned_cols=93  Identities=30%  Similarity=0.847  Sum_probs=80.6

Q ss_pred             cccccccccccc---------CceEecCCCCCcccccccCCC--C-CCCCCCCeEeCccccCCCCCCCCCCCcccccccc
Q psy14606         10 EHQDYCEVCQQG---------GEIILCDTCPRAYHLCCLDPE--L-DETPEGKWSCPRCVSDGPPETASPPAEEVKEKEV   77 (145)
Q Consensus        10 ~~~~~C~~C~~~---------g~l~~Cd~C~~~~H~~Cl~p~--~-~~~p~~~W~C~~C~~~~~~~~~~~~~~~~~~~~~   77 (145)
                      .+..+|.+|.++         ++||.|++|+++||.+||+..  + ..++.+.|+|+.|+                    
T Consensus         3 ~p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~--------------------   62 (112)
T 3v43_A            3 EPIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK--------------------   62 (112)
T ss_dssp             CCCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC--------------------
T ss_pred             ccCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC--------------------
Confidence            456789999653         479999999999999999742  2 24567899999998                    


Q ss_pred             cccccCCCC---CCeecCCCCCCCCCCCCCCCCCCCCCCCCceeCCCCC
Q psy14606         78 LCAKCKSPG---DQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCS  123 (145)
Q Consensus        78 ~C~vC~~~g---~~ll~C~~C~~~yH~~Cl~~~~~~~~p~~~w~C~~C~  123 (145)
                      +|.+|+..+   +.||.|+.|+++||.+||.|++. ++|++.|+|+.|.
T Consensus        63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~-~~P~~~W~C~~C~  110 (112)
T 3v43_A           63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLT-RMPKGMWICQICR  110 (112)
T ss_dssp             CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCS-SCCSSCCCCTTTS
T ss_pred             ccccccCcCCCccceEEcCCCCCeeecccCCCCCC-CCCCCCeECCCCC
Confidence            799999764   47999999999999999999999 9999999999996

>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*

Probab=99.83  E-value=3.3e-21  Score=129.55  Aligned_cols=88  Identities=39%  Similarity=0.945  Sum_probs=79.9

Q ss_pred             ccccccccccccccccCceEecC--CCCCcccccccCCCCCCCCCCCeEeCccccCCCCCCCCCCCcccccccccccccC
Q psy14606          6 DLQTEHQDYCEVCQQGGEIILCD--TCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPETASPPAEEVKEKEVLCAKCK   83 (145)
Q Consensus         6 ~~~~~~~~~C~~C~~~g~l~~Cd--~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~~~~~~~~~~~~~~~~~~~C~vC~   83 (145)
                      +.+..++++|.+|+++|+||.||  +|+++||+.|++  +..+|+++|+|+.|.                     |.+|+
T Consensus         9 ~~~~~~~~~C~~C~~~G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~---------------------C~~C~   65 (107)
T 4gne_A            9 EPKQMHEDYCFQCGDGGELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQ---------------------CDECS   65 (107)
T ss_dssp             -CCCSSCSSCTTTCCCSEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGB---------------------CTTTC
T ss_pred             CCcCCCCCCCCcCCCCCcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCC---------------------CCcCC
Confidence            34457889999999999999999  899999999998  889999999999996                     99999


Q ss_pred             CCCCCeecCCCCCCCCCCCCCCCCCCCCCCCCceeC
Q psy14606         84 SPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKC  119 (145)
Q Consensus        84 ~~g~~ll~C~~C~~~yH~~Cl~~~~~~~~p~~~w~C  119 (145)
                      +..  .+.|..|+++||..|+.+.+. ..+...|+|
T Consensus        66 k~~--~~~C~~Cp~sfC~~c~~g~l~-~~~~~~~~c   98 (107)
T 4gne_A           66 SAA--VSFCEFCPHSFCKDHEKGALV-PSALEGRLC   98 (107)
T ss_dssp             SBC--CEECSSSSCEECTTTCTTSCE-ECTTTTCEE
T ss_pred             CCC--CcCcCCCCcchhhhccCCcce-ecCCCCcee
Confidence            876  488999999999999999998 888889986

>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2

Probab=99.68  E-value=2.3e-17  Score=106.84  Aligned_cols=58  Identities=29%  Similarity=0.759  Sum_probs=53.8

Q ss_pred             CCccccccccccccccccccCceEecCCCCCcccccccCCCCCCCCCCCeEeCccccC
Q psy14606          2 SHIQDLQTEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSD   59 (145)
Q Consensus         2 ~~~~~~~~~~~~~C~~C~~~g~l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~   59 (145)
                      +..+.+...++++|.+|+++|+||+||.|+++||++|+.|++..+|+++|+|+.|...
T Consensus        15 ~~~~~~~d~n~~~C~vC~~~g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~   72 (88)
T 1fp0_A           15 IDEFGTLDDSATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL   72 (88)
T ss_dssp             CCCCCSSSSSSSCCSSSCSSSCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred             cccccccCCCCCcCcCcCCCCCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence            5567777899999999999999999999999999999999999999999999999854

>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}

Probab=99.67  E-value=3e-17  Score=99.90  Aligned_cols=57  Identities=70%  Similarity=1.576  Sum_probs=52.0

Q ss_pred             ccccccccccccccccccCceEecCCCCCcccccccCCCCCCCCCCCeEeCccccCC
Q psy14606          4 IQDLQTEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDG   60 (145)
Q Consensus         4 ~~~~~~~~~~~C~~C~~~g~l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~   60 (145)
                      .+..+..++++|.+|+++|+||.||.|+++||+.|++|++..+|+++|+|+.|+..+
T Consensus         3 ~~~~~~~~~~~C~vC~~~g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~g   59 (61)
T 2l5u_A            3 LGSYETDHQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKEG   59 (61)
T ss_dssp             CSCCSSCCCSSCTTTSCCSSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGGS
T ss_pred             CCcccCCCCCCCccCCCCCcEEECCCCChhhhhhccCCCCCCCCCCceECccccccc
Confidence            355677889999999999999999999999999999999999999999999998654

>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A

Probab=99.65  E-value=5.9e-17  Score=100.08  Aligned_cols=55  Identities=47%  Similarity=1.191  Sum_probs=50.2

Q ss_pred             cccccccccccccccCceEecCCCCCcccccccCCCCCCCCCCCeEeCccccCCC
Q psy14606          7 LQTEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGP   61 (145)
Q Consensus         7 ~~~~~~~~C~~C~~~g~l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~~   61 (145)
                      +...++++|.+|+++|+||+||.|+++||+.|++|++..+|.+.|+|+.|.....
T Consensus         3 ~~~~~~~~C~vC~~~g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~~   57 (66)
T 1xwh_A            3 MAQKNEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATV   57 (66)
T ss_dssp             CCCSCCCSBSSSSCCSSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTCC
T ss_pred             cCCCCCCCCccCCCCCCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCccc
Confidence            3457889999999999999999999999999999999999999999999986543

>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}

Probab=99.65  E-value=9.1e-17  Score=99.12  Aligned_cols=56  Identities=25%  Similarity=0.587  Sum_probs=49.9

Q ss_pred             cccccccccccccccccCceEecCCCCCcccccccCCCCCCCCCCCeEeCccccCC
Q psy14606          5 QDLQTEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDG   60 (145)
Q Consensus         5 ~~~~~~~~~~C~~C~~~g~l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~   60 (145)
                      .+....++..|.+|+++|+||+||.|+++||++|++|++..+|++.|+|+.|....
T Consensus         5 ~~~~~~~~~~C~vC~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~   60 (66)
T 2lri_C            5 GQQNLAPGARCGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV   60 (66)
T ss_dssp             TTTCCCTTCCCTTTSCCTTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred             cccCCCCCCCcCCCCCCCeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence            33444677889999999999999999999999999999999999999999998544

>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A

Probab=99.65  E-value=9.6e-17  Score=97.65  Aligned_cols=52  Identities=50%  Similarity=1.357  Sum_probs=48.4

Q ss_pred             cccccccccccccCceEecCCCCCcccccccCCCCCCCCCCCeEeCccccCC
Q psy14606          9 TEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDG   60 (145)
Q Consensus         9 ~~~~~~C~~C~~~g~l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~   60 (145)
                      ..++++|.+|+++|+||+||.|+++||++|++|++..+|+++|+|+.|+...
T Consensus         6 d~~~~~C~vC~~~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~   57 (61)
T 1mm2_A            6 DHHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA   57 (61)
T ss_dssp             CSSCSSCTTTCCCSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred             cCCCCcCCCCCCCCCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence            4678899999999999999999999999999999999999999999998654

>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A

Probab=99.63  E-value=3.1e-16  Score=95.39  Aligned_cols=57  Identities=46%  Similarity=1.161  Sum_probs=50.6

Q ss_pred             cccccccccccCCCCCCeecCCCCCCCCCCCCCCCCCCCCCCCCceeCCCCCCCCCCCc
Q psy14606         72 VKEKEVLCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCSCPPLPGK  130 (145)
Q Consensus        72 ~~~~~~~C~vC~~~g~~ll~C~~C~~~yH~~Cl~~~~~~~~p~~~w~C~~C~~~~~~~~  130 (145)
                      .+.+..+|.+|+.+| .||.|+.|+++||.+||.|++. ++|.+.|+|+.|..+.+++|
T Consensus         5 ~d~~~~~C~vC~~~g-~ll~Cd~C~~~fH~~Cl~ppl~-~~p~g~W~C~~C~~~~~k~~   61 (61)
T 1mm2_A            5 SDHHMEFCRVCKDGG-ELLCCDTCPSSYHIHCLNPPLP-EIPNGEWLCPRCTCPALKGK   61 (61)
T ss_dssp             SCSSCSSCTTTCCCS-SCBCCSSSCCCBCSSSSSSCCS-SCCSSCCCCTTTTTTCCTTC
T ss_pred             ccCCCCcCCCCCCCC-CEEEcCCCCHHHcccccCCCcC-cCCCCccCChhhcCchhcCC
Confidence            345566899999888 9999999999999999999999 99999999999998777654

>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.61  E-value=1.9e-16  Score=94.79  Aligned_cols=51  Identities=51%  Similarity=1.350  Sum_probs=47.5

Q ss_pred             ccccccccccccccCceEecCCCCCcccccccCCCCCCCCCCCeEeCcccc
Q psy14606          8 QTEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVS   58 (145)
Q Consensus         8 ~~~~~~~C~~C~~~g~l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~   58 (145)
                      ...++++|.+|+++|+||.||.|+++||+.|++|++..+|++.|+|+.|+.
T Consensus         5 ~~~~~~~C~vC~~~g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~   55 (56)
T 2yql_A            5 SSGHEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD   55 (56)
T ss_dssp             CCSSCCSCSSSCCSSCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred             cCCCCCCCccCCCCCeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence            356788999999999999999999999999999999999999999999963

>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}

Probab=99.59  E-value=2.9e-16  Score=95.23  Aligned_cols=50  Identities=52%  Similarity=1.359  Sum_probs=47.2

Q ss_pred             ccccccccccccCceEecCCCCCcccccccCCCCCCCCCCCeEeCccccC
Q psy14606         10 EHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSD   59 (145)
Q Consensus        10 ~~~~~C~~C~~~g~l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~   59 (145)
                      .++++|.+|+++|+||.||.|+++||+.|++|++..+|.+.|+|+.|...
T Consensus         3 ~~~~~C~vC~~~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~   52 (60)
T 2puy_A            3 IHEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQ   52 (60)
T ss_dssp             CCCSSCTTTCCCSSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHH
T ss_pred             CCCCCCcCCCCCCcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccCh
Confidence            57889999999999999999999999999999999999999999999754

>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}

Probab=99.52  E-value=3.1e-15  Score=92.24  Aligned_cols=52  Identities=25%  Similarity=0.577  Sum_probs=46.0

Q ss_pred             ccccccccCCCCCCeecCCCCCCCCCCCCCCCCCCCCCCCCceeCCCCCCCCCC
Q psy14606         75 KEVLCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCSCPPLP  128 (145)
Q Consensus        75 ~~~~C~vC~~~g~~ll~C~~C~~~yH~~Cl~~~~~~~~p~~~w~C~~C~~~~~~  128 (145)
                      ....|.+|++++ +||.|+.|+++||.+||+|++. ++|.+.|+|+.|+....+
T Consensus        11 ~~~~C~vC~~~~-~ll~Cd~C~~~~H~~Cl~P~l~-~~P~g~W~C~~C~~~~~p   62 (66)
T 2lri_C           11 PGARCGVCGDGT-DVLRCTHCAAAFHWRCHFPAGT-SRPGTGLRCRSCSGDVTP   62 (66)
T ss_dssp             TTCCCTTTSCCT-TCEECSSSCCEECHHHHCTTTC-CCCSSSCCCTTTTTCCCC
T ss_pred             CCCCcCCCCCCC-eEEECCCCCCceecccCCCccC-cCCCCCEECccccCCCcc
Confidence            345799999888 8999999999999999999999 999999999999755443

>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B

Probab=99.52  E-value=5e-15  Score=92.35  Aligned_cols=55  Identities=31%  Similarity=0.929  Sum_probs=48.9

Q ss_pred             CCCeEeCccccCCCCCCCCCCCcccccccccccccCCCC--CCeecCCCCCCCCCCCCCCCCCCCCCCCC-ceeCCCCCC
Q psy14606         48 EGKWSCPRCVSDGPPETASPPAEEVKEKEVLCAKCKSPG--DQFLLCETCNGSYHPHCLPDPIEGELPTS-GWKCPKCSC  124 (145)
Q Consensus        48 ~~~W~C~~C~~~~~~~~~~~~~~~~~~~~~~C~vC~~~g--~~ll~C~~C~~~yH~~Cl~~~~~~~~p~~-~w~C~~C~~  124 (145)
                      ...|+|+.|.                     |.+|+..+  +.||.|+.|+++||++||+||+. ++|.+ .|+|+.|..
T Consensus        11 ~~~w~C~~C~---------------------C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~-~~P~g~~W~C~~C~~   68 (70)
T 3asl_A           11 DVNRLCRVCA---------------------CHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLS-SVPSEDEWYCPECRN   68 (70)
T ss_dssp             CTTSCCTTTS---------------------BTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCS-SCCSSSCCCCTTTSC
T ss_pred             CCCeECCCCC---------------------CcCCCCcCCCCCEEEcCCCCCceecccCCCCcC-CCCCCCCcCCcCccC
Confidence            3579999995                     99999743  48999999999999999999999 99999 999999973

>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2

Probab=99.51  E-value=5.1e-15  Score=86.80  Aligned_cols=46  Identities=50%  Similarity=1.310  Sum_probs=41.9

Q ss_pred             cccccccccC---ceEecCCCCCcccccccCCCCCCCCCCCeEeCcccc
Q psy14606         13 DYCEVCQQGG---EIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVS   58 (145)
Q Consensus        13 ~~C~~C~~~g---~l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~   58 (145)
                      +.|.+|++++   +||.||+|+++||+.|++|++.++|+++|+|+.|+.
T Consensus         1 a~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~   49 (51)
T 1f62_A            1 ARCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP   49 (51)
T ss_dssp             CCCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred             CCCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence            3689999765   699999999999999999999999999999999974

>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2

Probab=99.51  E-value=2.8e-15  Score=97.52  Aligned_cols=57  Identities=30%  Similarity=0.734  Sum_probs=48.9

Q ss_pred             cccccccccccccccccc-----CceEecCCCCCcccccccCCCCCC----CCCCCeEeCccccCC
Q psy14606          4 IQDLQTEHQDYCEVCQQG-----GEIILCDTCPRAYHLCCLDPELDE----TPEGKWSCPRCVSDG   60 (145)
Q Consensus         4 ~~~~~~~~~~~C~~C~~~-----g~l~~Cd~C~~~~H~~Cl~p~~~~----~p~~~W~C~~C~~~~   60 (145)
                      .+.+...++.+|.+|+++     ++||+||.|+++||++|++|++..    +|.+.|+|+.|+...
T Consensus         8 ~dd~~~e~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~   73 (88)
T 1wev_A            8 ADDFAMEMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQM   73 (88)
T ss_dssp             CCCCHHHHCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHH
T ss_pred             cccccCCCCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchh
Confidence            344555677899999986     689999999999999999999984    899999999997654

>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}

Probab=99.50  E-value=1.1e-14  Score=92.21  Aligned_cols=53  Identities=32%  Similarity=0.964  Sum_probs=48.5

Q ss_pred             CCeEeCccccCCCCCCCCCCCcccccccccccccCCCC--CCeecCCCCCCCCCCCCCCCCCCCCCCCCc-eeCCCCC
Q psy14606         49 GKWSCPRCVSDGPPETASPPAEEVKEKEVLCAKCKSPG--DQFLLCETCNGSYHPHCLPDPIEGELPTSG-WKCPKCS  123 (145)
Q Consensus        49 ~~W~C~~C~~~~~~~~~~~~~~~~~~~~~~C~vC~~~g--~~ll~C~~C~~~yH~~Cl~~~~~~~~p~~~-w~C~~C~  123 (145)
                      .+|+|+.|.                     |.+|+..+  +.||.|+.|+++||++||.|++. ++|.+. |+|+.|.
T Consensus        20 ~~W~C~~C~---------------------C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~-~~P~g~~W~C~~C~   75 (77)
T 3shb_A           20 VNRLCRVCA---------------------CHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLS-SVPSEDEWYCPECR   75 (77)
T ss_dssp             TTSCCTTTS---------------------BTTTCCCSCGGGEEECTTTCCEEETTTSSSCCS-SCCSSSCCCCTTTC
T ss_pred             CCCCCCCCc---------------------CCccCCCCCCcceeEeCCCCCccCcccCCCccc-CCCCCCceECcCcc
Confidence            579999995                     99999865  47999999999999999999999 999998 9999996

>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.50  E-value=4.4e-15  Score=88.76  Aligned_cols=50  Identities=38%  Similarity=1.085  Sum_probs=45.2

Q ss_pred             cccccccccccCCCCCCeecCCCCCCCCCCCCCCCCCCCCCCCCceeCCCCC
Q psy14606         72 VKEKEVLCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCS  123 (145)
Q Consensus        72 ~~~~~~~C~vC~~~g~~ll~C~~C~~~yH~~Cl~~~~~~~~p~~~w~C~~C~  123 (145)
                      .+.+..+|.+|+.+| .||.|+.|+++||..||.|++. .+|++.|+|+.|.
T Consensus         5 ~~~~~~~C~vC~~~g-~ll~Cd~C~~~~H~~Cl~ppl~-~~p~g~W~C~~C~   54 (56)
T 2yql_A            5 SSGHEDFCSVCRKSG-QLLMCDTCSRVYHLDCLDPPLK-TIPKGMWICPRCQ   54 (56)
T ss_dssp             CCSSCCSCSSSCCSS-CCEECSSSSCEECSSSSSSCCC-SCCCSSCCCHHHH
T ss_pred             cCCCCCCCccCCCCC-eEEEcCCCCcceECccCCCCcC-CCCCCceEChhhh
Confidence            445566899999988 9999999999999999999999 9999999999985

>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2

Probab=99.49  E-value=3.9e-14  Score=91.65  Aligned_cols=51  Identities=24%  Similarity=0.901  Sum_probs=46.1

Q ss_pred             cccccccccccCCCCCCeecCCCCCCCCCCCCCCCCCCCCCCCCceeCCCCCC
Q psy14606         72 VKEKEVLCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCSC  124 (145)
Q Consensus        72 ~~~~~~~C~vC~~~g~~ll~C~~C~~~yH~~Cl~~~~~~~~p~~~w~C~~C~~  124 (145)
                      .+.+..+|.+|+.+| .||.|+.|+++||.+||.|++. ++|.++|+|+.|..
T Consensus        21 ~d~n~~~C~vC~~~g-~LL~CD~C~~~fH~~Cl~PpL~-~~P~g~W~C~~C~~   71 (88)
T 1fp0_A           21 LDDSATICRVCQKPG-DLVMCNQCEFCFHLDCHLPALQ-DVPGEEWSCSLCHV   71 (88)
T ss_dssp             SSSSSSCCSSSCSSS-CCEECTTSSCEECTTSSSTTCC-CCCSSSCCCCSCCC
T ss_pred             cCCCCCcCcCcCCCC-CEEECCCCCCceecccCCCCCC-CCcCCCcCCccccC
Confidence            445556899999988 8999999999999999999999 99999999999963

>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.49  E-value=3.7e-14  Score=89.90  Aligned_cols=45  Identities=38%  Similarity=1.000  Sum_probs=40.9

Q ss_pred             cccccCCC--CCCeecCCCCCCCCCCCCCCCCCCCCCCCC-ceeCCCCC
Q psy14606         78 LCAKCKSP--GDQFLLCETCNGSYHPHCLPDPIEGELPTS-GWKCPKCS  123 (145)
Q Consensus        78 ~C~vC~~~--g~~ll~C~~C~~~yH~~Cl~~~~~~~~p~~-~w~C~~C~  123 (145)
                      .|.+|+..  ++.||.|+.|+++||++||+||+. ++|.+ .|+|+.|.
T Consensus        28 ~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~-~~P~g~~W~C~~C~   75 (77)
T 2e6s_A           28 SCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLD-KVPEEEYWYCPSCK   75 (77)
T ss_dssp             SCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCS-SCCCSSCCCCTTTC
T ss_pred             CCcCcCCcCCCCCEEEcCCCCccccccccCCCcc-CCCCCCCcCCcCcc
Confidence            49999974  258999999999999999999999 99999 99999996

>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.48  E-value=1.2e-14  Score=95.30  Aligned_cols=55  Identities=38%  Similarity=1.006  Sum_probs=48.5

Q ss_pred             cccccccccccccccccC---ceEecCCCCCcccccccCCCCCCCCCCCeEeCccccC
Q psy14606          5 QDLQTEHQDYCEVCQQGG---EIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSD   59 (145)
Q Consensus         5 ~~~~~~~~~~C~~C~~~g---~l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~   59 (145)
                      +.+...++++|.+|++++   +||+||.|+++||+.|++|++..+|++.|+|+.|+..
T Consensus         9 s~~~~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~   66 (92)
T 2e6r_A            9 SSAQFIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA   66 (92)
T ss_dssp             CCCCCCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred             chhhccCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence            344557778999999876   5999999999999999999999999999999999754

>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A

Probab=99.48  E-value=7.2e-15  Score=90.65  Aligned_cols=52  Identities=31%  Similarity=0.945  Sum_probs=45.8

Q ss_pred             cccccccccCCCCCCeecCCCCCCCCCCCCCCCCCCCCCCCCceeCCCCCCCCC
Q psy14606         74 EKEVLCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCSCPPL  127 (145)
Q Consensus        74 ~~~~~C~vC~~~g~~ll~C~~C~~~yH~~Cl~~~~~~~~p~~~w~C~~C~~~~~  127 (145)
                      .+..+|.+|+.+| .||.|+.|+++||..||.|++. ++|.+.|+|+.|.....
T Consensus         6 ~~~~~C~vC~~~g-~ll~CD~C~~~fH~~Cl~ppl~-~~P~g~W~C~~C~~~~~   57 (66)
T 1xwh_A            6 KNEDECAVCRDGG-ELICCDGCPRAFHLACLSPPLR-EIPSGTWRCSSCLQATV   57 (66)
T ss_dssp             SCCCSBSSSSCCS-SCEECSSCCCEECTTTSSSCCS-SCCSSCCCCHHHHHTCC
T ss_pred             CCCCCCccCCCCC-CEEEcCCCChhhcccccCCCcC-cCCCCCeECccccCccc
Confidence            3455899999988 9999999999999999999999 99999999999964433

>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*

Probab=99.48  E-value=1.8e-14  Score=107.12  Aligned_cols=54  Identities=39%  Similarity=1.066  Sum_probs=50.0

Q ss_pred             ccccccccccccccCceEecCCCCCcccccccCCCCCCCCCCCeEeCccccCCC
Q psy14606          8 QTEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGP   61 (145)
Q Consensus         8 ~~~~~~~C~~C~~~g~l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~~   61 (145)
                      +..++++|.+|+++|+||+||+|+++||..|+.|++..+|.+.|+|+.|+....
T Consensus         3 ~d~~~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~   56 (207)
T 3u5n_A            3 DDPNEDWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGK   56 (207)
T ss_dssp             CCSSCSSBTTTCCCEEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred             CCCCCCCCCCCCCCCceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCccc
Confidence            346889999999999999999999999999999999999999999999987654

>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A

Probab=99.47  E-value=2.2e-14  Score=104.82  Aligned_cols=52  Identities=40%  Similarity=1.104  Sum_probs=48.6

Q ss_pred             ccccccccccccCceEecCCCCCcccccccCCCCCCCCCCCeEeCccccCCC
Q psy14606         10 EHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGP   61 (145)
Q Consensus        10 ~~~~~C~~C~~~g~l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~~   61 (145)
                      .++++|.+|+++|+|++||+|+++||..|+.|++..+|.+.|+|+.|+....
T Consensus         2 ~~~~~C~~C~~~g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~   53 (184)
T 3o36_A            2 PNEDWCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK   53 (184)
T ss_dssp             CSCSSCTTTCCCSSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred             CCCCccccCCCCCeeeecCCCCcccCccccCCCCCCCCCCCEECccccCccc
Confidence            4789999999999999999999999999999999999999999999986543

>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B

Probab=99.45  E-value=4.1e-14  Score=88.16  Aligned_cols=45  Identities=38%  Similarity=1.094  Sum_probs=41.5

Q ss_pred             ccccccc---cCceEecCCCCCcccccccCCCCCCCCCC-CeEeCcccc
Q psy14606         14 YCEVCQQ---GGEIILCDTCPRAYHLCCLDPELDETPEG-KWSCPRCVS   58 (145)
Q Consensus        14 ~C~~C~~---~g~l~~Cd~C~~~~H~~Cl~p~~~~~p~~-~W~C~~C~~   58 (145)
                      .|.+|++   +|+||+||+|+++||++||+|++..+|++ .|+|+.|+.
T Consensus        20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~   68 (70)
T 3asl_A           20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN   68 (70)
T ss_dssp             SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred             CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence            6788884   67899999999999999999999999999 999999974

>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}

Probab=99.45  E-value=1.3e-14  Score=89.40  Aligned_cols=52  Identities=33%  Similarity=0.933  Sum_probs=45.6

Q ss_pred             ccccccccccccc-----CceEecCCCCCcccccccCCCCCC--C-CCCCeEeCccccCC
Q psy14606          9 TEHQDYCEVCQQG-----GEIILCDTCPRAYHLCCLDPELDE--T-PEGKWSCPRCVSDG   60 (145)
Q Consensus         9 ~~~~~~C~~C~~~-----g~l~~Cd~C~~~~H~~Cl~p~~~~--~-p~~~W~C~~C~~~~   60 (145)
                      ..++++|.+|+++     ++||+||.|+++||++|++|++..  + |.+.|+|+.|....
T Consensus         3 ~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~   62 (66)
T 2yt5_A            3 SGSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT   62 (66)
T ss_dssp             CCCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred             CCCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence            3567899999987     789999999999999999999876  3 88999999997543

>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.44  E-value=5.1e-14  Score=89.27  Aligned_cols=47  Identities=45%  Similarity=1.065  Sum_probs=42.7

Q ss_pred             ccccccccc---cCceEecCCCCCcccccccCCCCCCCCCC-CeEeCcccc
Q psy14606         12 QDYCEVCQQ---GGEIILCDTCPRAYHLCCLDPELDETPEG-KWSCPRCVS   58 (145)
Q Consensus        12 ~~~C~~C~~---~g~l~~Cd~C~~~~H~~Cl~p~~~~~p~~-~W~C~~C~~   58 (145)
                      +..|.+|+.   +++||+||.|+++||++||+|++..+|++ .|+|+.|..
T Consensus        26 ~c~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~   76 (77)
T 2e6s_A           26 SCSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT   76 (77)
T ss_dssp             SSSCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred             CCCCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence            348899994   67899999999999999999999999999 999999973

>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}

Probab=99.42  E-value=2.2e-14  Score=86.84  Aligned_cols=47  Identities=40%  Similarity=1.166  Sum_probs=43.6

Q ss_pred             ccccccccCCCCCCeecCCCCCCCCCCCCCCCCCCCCCCCCceeCCCCC
Q psy14606         75 KEVLCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCS  123 (145)
Q Consensus        75 ~~~~C~vC~~~g~~ll~C~~C~~~yH~~Cl~~~~~~~~p~~~w~C~~C~  123 (145)
                      +..+|.+|+.+| .||.|+.|+++||..|+.|++. ++|.+.|+|+.|.
T Consensus         4 ~~~~C~vC~~~g-~ll~Cd~C~~~fH~~Cl~ppl~-~~p~g~W~C~~C~   50 (60)
T 2puy_A            4 HEDFCSVCRKSG-QLLMCDTCSRVYHLDCLDPPLK-TIPKGMWICPRCQ   50 (60)
T ss_dssp             CCSSCTTTCCCS-SCEECSSSSCEECGGGSSSCCS-SCCCSCCCCHHHH
T ss_pred             CCCCCcCCCCCC-cEEEcCCCCcCEECCcCCCCcC-CCCCCceEChhcc
Confidence            445899999988 9999999999999999999999 9999999999995

>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}

Probab=99.42  E-value=3e-14  Score=88.99  Aligned_cols=51  Identities=31%  Similarity=0.826  Sum_probs=44.5

Q ss_pred             cccccccccccccccC-----ceEecCCCCCcccccccCCCCCCCCCCCeEeCccccC
Q psy14606          7 LQTEHQDYCEVCQQGG-----EIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSD   59 (145)
Q Consensus         7 ~~~~~~~~C~~C~~~g-----~l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~   59 (145)
                      +...++++|.+|++++     +||+||+|+++||++|++|+  .+|+++|+|+.|+..
T Consensus        11 ~~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~--~vP~g~W~C~~C~~~   66 (71)
T 2ku3_A           11 SLIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVP--YIPEGQWLCRHCLQS   66 (71)
T ss_dssp             CCCCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCS--SCCSSCCCCHHHHHH
T ss_pred             cCCCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCC--cCCCCCcCCccCcCc
Confidence            4457788999999875     89999999999999999976  489999999999743

>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}

Probab=99.42  E-value=2.1e-14  Score=87.21  Aligned_cols=50  Identities=34%  Similarity=0.971  Sum_probs=44.9

Q ss_pred             ccccccccccCCCCCCeecCCCCCCCCCCCCCCCCCCCCCCCCceeCCCCCC
Q psy14606         73 KEKEVLCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCSC  124 (145)
Q Consensus        73 ~~~~~~C~vC~~~g~~ll~C~~C~~~yH~~Cl~~~~~~~~p~~~w~C~~C~~  124 (145)
                      ..+..+|.+|+.+| .||.|+.|+++||..||.|++. ++|++.|+|+.|..
T Consensus         8 ~~~~~~C~vC~~~g-~ll~CD~C~~~fH~~Cl~p~l~-~~p~g~W~C~~C~~   57 (61)
T 2l5u_A            8 TDHQDYCEVCQQGG-EIILCDTCPRAYHMVCLDPDME-KAPEGKWSCPHCEK   57 (61)
T ss_dssp             SCCCSSCTTTSCCS-SEEECSSSSCEEEHHHHCTTCC-SCCCSSCCCTTGGG
T ss_pred             CCCCCCCccCCCCC-cEEECCCCChhhhhhccCCCCC-CCCCCceECccccc
Confidence            34455899999987 9999999999999999999998 99999999999963

>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2

Probab=99.40  E-value=4e-14  Score=82.93  Aligned_cols=45  Identities=38%  Similarity=1.136  Sum_probs=41.2

Q ss_pred             cccccCCCC--CCeecCCCCCCCCCCCCCCCCCCCCCCCCceeCCCCC
Q psy14606         78 LCAKCKSPG--DQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCS  123 (145)
Q Consensus        78 ~C~vC~~~g--~~ll~C~~C~~~yH~~Cl~~~~~~~~p~~~w~C~~C~  123 (145)
                      +|.+|+.++  +.||.|+.|+++||..|++|++. ++|+++|+|+.|.
T Consensus         2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~-~~P~g~W~C~~C~   48 (51)
T 1f62_A            2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALY-EVPDGEWQCPACQ   48 (51)
T ss_dssp             CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCC-SCCSSCCSCTTTS
T ss_pred             CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcC-CCCCCcEECcCcc
Confidence            588999765  47999999999999999999999 9999999999996

>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}

Probab=99.39  E-value=6.4e-14  Score=91.02  Aligned_cols=50  Identities=32%  Similarity=0.879  Sum_probs=44.3

Q ss_pred             cccccccccccccC-----ceEecCCCCCcccccccCCCCCCCCCCCeEeCccccCC
Q psy14606          9 TEHQDYCEVCQQGG-----EIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDG   60 (145)
Q Consensus         9 ~~~~~~C~~C~~~g-----~l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~   60 (145)
                      ..++++|.+|++++     +||+||.|+++||+.|++|++  +|.+.|+|+.|....
T Consensus        22 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~--vP~g~W~C~~C~~~~   76 (88)
T 2l43_A           22 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY--IPEGQWLCRHCLQSR   76 (88)
T ss_dssp             CCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSS--CCSSCCCCHHHHHHT
T ss_pred             CCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCc--cCCCceECccccCcc
Confidence            46778999999887     899999999999999999874  899999999997543

>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}

Probab=99.36  E-value=2.2e-13  Score=100.10  Aligned_cols=49  Identities=35%  Similarity=0.934  Sum_probs=46.3

Q ss_pred             ccccccccccCceEecCCCCCcccccccCCCCCCCCCCCeEeCccccCC
Q psy14606         12 QDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDG   60 (145)
Q Consensus        12 ~~~C~~C~~~g~l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~   60 (145)
                      +++|.+|+++|+|++||+|+++||..|+.|++..+|.+.|+|+.|+...
T Consensus         2 ~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~   50 (189)
T 2ro1_A            2 ATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP   50 (189)
T ss_dssp             CCCBTTTCCCSSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred             CCcCccCCCCCceeECCCCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence            5789999999999999999999999999999999999999999998654

>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.34  E-value=2.4e-13  Score=88.97  Aligned_cols=46  Identities=39%  Similarity=1.121  Sum_probs=42.4

Q ss_pred             cccccCCCC--CCeecCCCCCCCCCCCCCCCCCCCCCCCCceeCCCCCC
Q psy14606         78 LCAKCKSPG--DQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCSC  124 (145)
Q Consensus        78 ~C~vC~~~g--~~ll~C~~C~~~yH~~Cl~~~~~~~~p~~~w~C~~C~~  124 (145)
                      +|.+|+..+  +.||.|+.|+++||..||.|++. ++|.+.|+|+.|..
T Consensus        18 ~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~-~~P~g~W~C~~C~~   65 (92)
T 2e6r_A           18 ICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLP-EIPRGIWRCPKCIL   65 (92)
T ss_dssp             CCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCS-SCCSSCCCCHHHHH
T ss_pred             CCccCCCcCCCCCEEEcCCCCchhccccCCCCcc-cCCCCCcCCccCcC
Confidence            799999876  36999999999999999999999 99999999999953

>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}

Probab=99.33  E-value=7e-13  Score=83.94  Aligned_cols=45  Identities=38%  Similarity=1.093  Sum_probs=39.4

Q ss_pred             cccccccc---CceEecCCCCCcccccccCCCCCCCCCCC-eEeCcccc
Q psy14606         14 YCEVCQQG---GEIILCDTCPRAYHLCCLDPELDETPEGK-WSCPRCVS   58 (145)
Q Consensus        14 ~C~~C~~~---g~l~~Cd~C~~~~H~~Cl~p~~~~~p~~~-W~C~~C~~   58 (145)
                      .|.+|++.   ++||+||.|+++||++||+|++..+|+++ |+|+.|+.
T Consensus        28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~   76 (77)
T 3shb_A           28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN   76 (77)
T ss_dssp             SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred             cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence            46666654   57999999999999999999999999998 99999974

>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A

Probab=99.31  E-value=1.4e-12  Score=88.29  Aligned_cols=53  Identities=32%  Similarity=0.895  Sum_probs=45.4

Q ss_pred             cccccccccccccccc----CceEecCCCCCcccccccCCCCCCCCCCCeEeCcccc
Q psy14606          6 DLQTEHQDYCEVCQQG----GEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVS   58 (145)
Q Consensus         6 ~~~~~~~~~C~~C~~~----g~l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~   58 (145)
                      .+....-.+|.+|+++    ++||+||.|+++||++||+|++..+|+++|+|+.|+.
T Consensus        55 ~W~C~~C~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~  111 (112)
T 3v43_A           55 RWQCIECKTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP  111 (112)
T ss_dssp             CCCCTTTCCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred             ccccccCCccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence            3444455589999875    4799999999999999999999999999999999974

>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}

Probab=99.28  E-value=2.4e-13  Score=83.67  Aligned_cols=51  Identities=22%  Similarity=0.754  Sum_probs=42.6

Q ss_pred             cccccccccCCCC----CCeecCCCCCCCCCCCCCCCCCCCC--C-CCCceeCCCCCCC
Q psy14606         74 EKEVLCAKCKSPG----DQFLLCETCNGSYHPHCLPDPIEGE--L-PTSGWKCPKCSCP  125 (145)
Q Consensus        74 ~~~~~C~vC~~~g----~~ll~C~~C~~~yH~~Cl~~~~~~~--~-p~~~w~C~~C~~~  125 (145)
                      .+..+|.+|+.+.    ..||+|+.|+++||..|+.|++. +  + |.+.|+|+.|...
T Consensus         4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~-~~~~~p~~~W~C~~C~~~   61 (66)
T 2yt5_A            4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHID-SSVIDSDEKWLCRQCVFA   61 (66)
T ss_dssp             CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCC-HHHHHSSCCCCCHHHHHT
T ss_pred             CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCccc-ccccCCCCCEECCCCcCc
Confidence            3445799999861    48999999999999999999987 5  3 8899999999643

>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}

Probab=99.28  E-value=2.1e-12  Score=87.12  Aligned_cols=55  Identities=35%  Similarity=0.880  Sum_probs=46.5

Q ss_pred             ccccccccccccccccCc---eEecCCCCCcccccccCCCCCCCCCCCeEeCccccCC
Q psy14606          6 DLQTEHQDYCEVCQQGGE---IILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDG   60 (145)
Q Consensus         6 ~~~~~~~~~C~~C~~~g~---l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~   60 (145)
                      .+....-.+|.+|+++++   ||.||.|+++||+.|++|++..+|+++|+|+.|....
T Consensus        48 ~W~C~~C~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c~  105 (111)
T 2ysm_A           48 GWQCPECKVCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRICI  105 (111)
T ss_dssp             TCCCTTTCCCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCCS
T ss_pred             CccCCcCCcccccCccCCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCcC
Confidence            344444457889998765   9999999999999999999999999999999998543

>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*

Probab=99.27  E-value=1.6e-12  Score=88.18  Aligned_cols=52  Identities=38%  Similarity=0.999  Sum_probs=44.9

Q ss_pred             cccccccccccccc---cCceEecCCCCCcccccccCCCCCCCCCCCeEeCcccc
Q psy14606          7 LQTEHQDYCEVCQQ---GGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVS   58 (145)
Q Consensus         7 ~~~~~~~~C~~C~~---~g~l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~   58 (145)
                      +...+-..|.+|++   +++||+||.|+++||++||+|++..+|+++|+|+.|..
T Consensus        53 W~C~~C~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~  107 (114)
T 2kwj_A           53 WQCIECKSCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWE  107 (114)
T ss_dssp             CCCGGGCCCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHH
T ss_pred             cCccccCccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccc
Confidence            33344457889987   47899999999999999999999999999999999974

>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A

Probab=99.26  E-value=8.2e-13  Score=92.56  Aligned_cols=52  Identities=27%  Similarity=0.742  Sum_probs=46.6

Q ss_pred             ccccccccccccccCceEecCCCCCcccccccCCCCCC-------CCCCCeEeCccccC
Q psy14606          8 QTEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDE-------TPEGKWSCPRCVSD   59 (145)
Q Consensus         8 ~~~~~~~C~~C~~~g~l~~Cd~C~~~~H~~Cl~p~~~~-------~p~~~W~C~~C~~~   59 (145)
                      ++.++++|.+|+++|+|++||.|+++||..|+.|++..       .|.++|+|+.|...
T Consensus        59 ~Dg~~d~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~  117 (142)
T 2lbm_A           59 SDGMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE  117 (142)
T ss_dssp             TTSCBCSCSSSCCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred             CCCCCCeecccCCCCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence            35788999999999999999999999999999998862       58899999999854

>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A

Probab=99.26  E-value=3.5e-12  Score=93.05  Aligned_cols=50  Identities=30%  Similarity=0.790  Sum_probs=45.1

Q ss_pred             ccccccccCCCCCCeecCCCCCCCCCCCCCCCCCCCCCCCCceeCCCCCCCC
Q psy14606         75 KEVLCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCSCPP  126 (145)
Q Consensus        75 ~~~~C~vC~~~g~~ll~C~~C~~~yH~~Cl~~~~~~~~p~~~w~C~~C~~~~  126 (145)
                      +..+|.+|+.+| +||.|+.|+++||..|+.|++. .+|.+.|+|+.|....
T Consensus         3 ~~~~C~~C~~~g-~ll~Cd~C~~~~H~~C~~p~l~-~~p~~~W~C~~C~~~~   52 (184)
T 3o36_A            3 NEDWCAVCQNGG-ELLCCEKCPKVFHLSCHVPTLT-NFPSGEWICTFCRDLS   52 (184)
T ss_dssp             SCSSCTTTCCCS-SCEECSSSSCEECTTTSSSCCS-SCCSSCCCCTTTSCSS
T ss_pred             CCCccccCCCCC-eeeecCCCCcccCccccCCCCC-CCCCCCEECccccCcc
Confidence            445899999988 8999999999999999999999 9999999999997543

>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}

Probab=99.26  E-value=2.2e-12  Score=96.65  Aligned_cols=45  Identities=33%  Similarity=1.016  Sum_probs=38.7

Q ss_pred             cccccCCCC--CCeecCCCCCCCCCCCCCCCCCCCCCCCC-ceeCCCCC
Q psy14606         78 LCAKCKSPG--DQFLLCETCNGSYHPHCLPDPIEGELPTS-GWKCPKCS  123 (145)
Q Consensus        78 ~C~vC~~~g--~~ll~C~~C~~~yH~~Cl~~~~~~~~p~~-~w~C~~C~  123 (145)
                      .|.+|+..+  +.||.|+.|+++||..||.||+. ++|.+ .|+|+.|.
T Consensus       176 ~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~-~vP~G~~W~Cp~C~  223 (226)
T 3ask_A          176 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLS-SVPSEDEWYCPECR  223 (226)
T ss_dssp             SCSSSCCCCC--CCEECSSSCCEECSCC--CCCC-SCCSSSCCCCGGGC
T ss_pred             CCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcc-cCCCCCCCCCcCCc
Confidence            599999843  48999999999999999999999 99999 99999996

>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*

Probab=99.25  E-value=3.5e-12  Score=94.75  Aligned_cols=51  Identities=29%  Similarity=0.748  Sum_probs=46.0

Q ss_pred             ccccccccccCCCCCCeecCCCCCCCCCCCCCCCCCCCCCCCCceeCCCCCCC
Q psy14606         73 KEKEVLCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCSCP  125 (145)
Q Consensus        73 ~~~~~~C~vC~~~g~~ll~C~~C~~~yH~~Cl~~~~~~~~p~~~w~C~~C~~~  125 (145)
                      +.+..+|.+|+.+| .||.|+.|+++||..||.|++. ++|.+.|+|+.|...
T Consensus         4 d~~~~~C~~C~~~g-~ll~Cd~C~~~~H~~Cl~p~l~-~~p~~~W~C~~C~~~   54 (207)
T 3u5n_A            4 DPNEDWCAVCQNGG-DLLCCEKCPKVFHLTCHVPTLL-SFPSGDWICTFCRDI   54 (207)
T ss_dssp             CSSCSSBTTTCCCE-EEEECSSSSCEECTTTSSSCCS-SCCSSCCCCTTTSCS
T ss_pred             CCCCCCCCCCCCCC-ceEEcCCCCCccCCccCCCCCC-CCCCCCEEeCceeCc
Confidence            44556899999988 8999999999999999999999 999999999999643

>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}

Probab=99.21  E-value=1.3e-11  Score=90.51  Aligned_cols=48  Identities=27%  Similarity=0.959  Sum_probs=44.2

Q ss_pred             ccccccCCCCCCeecCCCCCCCCCCCCCCCCCCCCCCCCceeCCCCCCCC
Q psy14606         77 VLCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCSCPP  126 (145)
Q Consensus        77 ~~C~vC~~~g~~ll~C~~C~~~yH~~Cl~~~~~~~~p~~~w~C~~C~~~~  126 (145)
                      .+|.+|+.+| .||.|+.|+++||..|+.|++. .+|.+.|+|+.|....
T Consensus         3 ~~C~~C~~~g-~ll~Cd~C~~~~H~~Cl~p~l~-~~p~g~W~C~~C~~~~   50 (189)
T 2ro1_A            3 TICRVCQKPG-DLVMCNQCEFCFHLDCHLPALQ-DVPGEEWSCSLCHVLP   50 (189)
T ss_dssp             CCBTTTCCCS-SCCCCTTTCCBCCSTTSTTCCS-SCCCTTCCTTTTSCSC
T ss_pred             CcCccCCCCC-ceeECCCCCchhccccCCCCcc-cCCCCCCCCcCccCCC
Confidence            4799999988 8999999999999999999999 9999999999997543

>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}

Probab=99.20  E-value=7.3e-12  Score=93.79  Aligned_cols=47  Identities=36%  Similarity=1.014  Sum_probs=39.0

Q ss_pred             ccccccccc---cCceEecCCCCCcccccccCCCCCCCCCC-CeEeCcccc
Q psy14606         12 QDYCEVCQQ---GGEIILCDTCPRAYHLCCLDPELDETPEG-KWSCPRCVS   58 (145)
Q Consensus        12 ~~~C~~C~~---~g~l~~Cd~C~~~~H~~Cl~p~~~~~p~~-~W~C~~C~~   58 (145)
                      +..|.+|++   +++||+||+|+++||+.||+|++..+|++ .|+|+.|..
T Consensus       174 ~c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~  224 (226)
T 3ask_A          174 VCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN  224 (226)
T ss_dssp             TTSCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred             CCCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence            347999987   57899999999999999999999999999 999999974

>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2

Probab=99.19  E-value=2.4e-12  Score=83.53  Aligned_cols=48  Identities=25%  Similarity=0.796  Sum_probs=42.2

Q ss_pred             ccccccccCCCC----CCeecCCCCCCCCCCCCCCCCCCCC----CCCCceeCCCCC
Q psy14606         75 KEVLCAKCKSPG----DQFLLCETCNGSYHPHCLPDPIEGE----LPTSGWKCPKCS  123 (145)
Q Consensus        75 ~~~~C~vC~~~g----~~ll~C~~C~~~yH~~Cl~~~~~~~----~p~~~w~C~~C~  123 (145)
                      ...+|.+|+.+.    +.||+|+.|+++||.+||.|++. .    +|.+.|+|+.|.
T Consensus        15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~-~~~~~~p~g~W~C~~C~   70 (88)
T 1wev_A           15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVT-DKEVNDPRLVWYCARCT   70 (88)
T ss_dssp             HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCC-HHHHHCTTCCCCCHHHH
T ss_pred             CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCccc-ccccCCCCCCeeCcccc
Confidence            345899999863    47999999999999999999988 5    899999999995

>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*

Probab=99.16  E-value=7.8e-12  Score=83.77  Aligned_cols=54  Identities=30%  Similarity=0.827  Sum_probs=45.2

Q ss_pred             CcccccccccccccCCCCCCeecCC--CCCCCCCCCCCCCCCCCCCCCCceeCCCCCCCC
Q psy14606         69 AEEVKEKEVLCAKCKSPGDQFLLCE--TCNGSYHPHCLPDPIEGELPTSGWKCPKCSCPP  126 (145)
Q Consensus        69 ~~~~~~~~~~C~vC~~~g~~ll~C~--~C~~~yH~~Cl~~~~~~~~p~~~w~C~~C~~~~  126 (145)
                      .+....+..+|.+|+++| +||.|+  .|+++||..||.  +. ++|+++|+|+.|.+..
T Consensus         8 ~~~~~~~~~~C~~C~~~G-~ll~CD~~~Cp~~fH~~Cl~--L~-~~P~g~W~Cp~c~C~~   63 (107)
T 4gne_A            8 TEPKQMHEDYCFQCGDGG-ELVMCDKKDCPKAYHLLCLN--LT-QPPYGKWECPWHQCDE   63 (107)
T ss_dssp             --CCCSSCSSCTTTCCCS-EEEECCSTTCCCEECTGGGT--CS-SCCSSCCCCGGGBCTT
T ss_pred             CCCcCCCCCCCCcCCCCC-cEeEECCCCCCcccccccCc--CC-cCCCCCEECCCCCCCc
Confidence            344556677899999888 999999  899999999998  67 8999999999997653

>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A

Probab=99.15  E-value=8.1e-13  Score=92.61  Aligned_cols=78  Identities=17%  Similarity=0.461  Sum_probs=59.9

Q ss_pred             CCeEeCccccCCCCCCCCCCCcccccccccccccCCCCCCeecCCCCCCCCCCCCCCCCCCC----C--CCCCceeCCCC
Q psy14606         49 GKWSCPRCVSDGPPETASPPAEEVKEKEVLCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEG----E--LPTSGWKCPKC  122 (145)
Q Consensus        49 ~~W~C~~C~~~~~~~~~~~~~~~~~~~~~~C~vC~~~g~~ll~C~~C~~~yH~~Cl~~~~~~----~--~p~~~w~C~~C  122 (145)
                      +.|+|..|.......   .....++.+..+|.+|+.+| +||.|+.|+++||..||.|++..    +  .|.++|.|+.|
T Consensus        39 ~v~~C~~C~~~y~~~---~~~~d~Dg~~d~C~vC~~GG-~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C  114 (142)
T 2lbm_A           39 QVLICKNCFKYYMSD---DISRDSDGMDEQCRWCAEGG-NLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYIC  114 (142)
T ss_dssp             TEEEEHHHHHHHHHS---CCCBCTTSCBCSCSSSCCCS-SEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTT
T ss_pred             cccccHHHHHHHhcC---CceecCCCCCCeecccCCCC-cEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecc
Confidence            579999998533211   22334566778999999999 99999999999999999988641    2  47899999999


Q ss_pred             CCCCCCCc
Q psy14606        123 SCPPLPGK  130 (145)
Q Consensus       123 ~~~~~~~~  130 (145)
                      ..+++.+.
T Consensus       115 ~~~pl~~l  122 (142)
T 2lbm_A          115 HPEPLLDL  122 (142)
T ss_dssp             CCCTTHHH
T ss_pred             cCccHHHH
Confidence            87666543

>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*

Probab=99.15  E-value=1.3e-11  Score=77.62  Aligned_cols=51  Identities=27%  Similarity=0.669  Sum_probs=44.1

Q ss_pred             ccccccccccccc---CceEecCCCCCcccccccCCCCCCCCCCCeEeCccccC
Q psy14606          9 TEHQDYCEVCQQG---GEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSD   59 (145)
Q Consensus         9 ~~~~~~C~~C~~~---g~l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~   59 (145)
                      ..+..+|.+|++.   +.||.||.|++.||..|++++....+.+.|+|+.|...
T Consensus        15 ~~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~   68 (75)
T 2k16_A           15 GNQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANK   68 (75)
T ss_dssp             SCEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHH
T ss_pred             CCCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCc
Confidence            3556689999975   36999999999999999999888888899999999754

>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}

Probab=99.12  E-value=3.9e-12  Score=82.53  Aligned_cols=57  Identities=25%  Similarity=0.682  Sum_probs=45.1

Q ss_pred             cccccccccccCCCC----CCeecCCCCCCCCCCCCCCCCCCCCCCCCceeCCCCCCCCCCCch
Q psy14606         72 VKEKEVLCAKCKSPG----DQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCSCPPLPGKL  131 (145)
Q Consensus        72 ~~~~~~~C~vC~~~g----~~ll~C~~C~~~yH~~Cl~~~~~~~~p~~~w~C~~C~~~~~~~~~  131 (145)
                      ...+..+|.+|+.++    +.||.|+.|+++||..|+.|+   .+|.+.|+|+.|........+
T Consensus        21 ~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~---~vP~g~W~C~~C~~~~~~~~~   81 (88)
T 2l43_A           21 LIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVP---YIPEGQWLCRHCLQSRARPAL   81 (88)
T ss_dssp             CCCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCS---SCCSSCCCCHHHHHHTTSCC-
T ss_pred             cCCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCC---ccCCCceECccccCccchhhh
Confidence            344556899999864    479999999999999999987   468999999999655444443

>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A

Probab=99.09  E-value=6.8e-12  Score=86.52  Aligned_cols=52  Identities=27%  Similarity=0.735  Sum_probs=45.2

Q ss_pred             ccccccccccccccCceEecCCCCCcccccccCCCCC-----CC--CCCCeEeCccccC
Q psy14606          8 QTEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELD-----ET--PEGKWSCPRCVSD   59 (145)
Q Consensus         8 ~~~~~~~C~~C~~~g~l~~Cd~C~~~~H~~Cl~p~~~-----~~--p~~~W~C~~C~~~   59 (145)
                      ++.++++|.+|+++|+|++||.|+++||..|+.|++.     ++  +.+.|+|..|...
T Consensus        53 ~Dg~~~~C~vC~dGG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~  111 (129)
T 3ql9_A           53 SDGMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE  111 (129)
T ss_dssp             TTSCBSSCTTTCCCSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred             CCCCCCcCeecCCCCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence            3578889999999999999999999999999998743     33  7899999999754

>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*

Probab=99.08  E-value=1.4e-11  Score=77.49  Aligned_cols=49  Identities=27%  Similarity=0.735  Sum_probs=41.6

Q ss_pred             cccccccccCCCC--CCeecCCCCCCCCCCCCCCCCCCCCCCCCceeCCCCC
Q psy14606         74 EKEVLCAKCKSPG--DQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCS  123 (145)
Q Consensus        74 ~~~~~C~vC~~~g--~~ll~C~~C~~~yH~~Cl~~~~~~~~p~~~w~C~~C~  123 (145)
                      ....+|.+|+...  +.||.|+.|++|||..|++++.. .++.+.|+|+.|.
T Consensus        16 ~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~-~~~~~~w~C~~C~   66 (75)
T 2k16_A           16 NQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAA-PPEEMQWFCPKCA   66 (75)
T ss_dssp             CEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSC-CCSSSCCCCTTTH
T ss_pred             CCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCcc-CCCCCCEEChhcc
Confidence            3445788898763  46999999999999999999887 7777899999995

>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}

Probab=99.06  E-value=7.9e-12  Score=77.92  Aligned_cols=46  Identities=28%  Similarity=0.849  Sum_probs=39.8

Q ss_pred             ccccccccCCCC----CCeecCCCCCCCCCCCCCCCCCCCCCCCCceeCCCCC
Q psy14606         75 KEVLCAKCKSPG----DQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCS  123 (145)
Q Consensus        75 ~~~~C~vC~~~g----~~ll~C~~C~~~yH~~Cl~~~~~~~~p~~~w~C~~C~  123 (145)
                      ...+|.+|++++    +.||.|+.|+++||.+|++++   .+|+++|+|+.|.
T Consensus        15 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~---~vP~g~W~C~~C~   64 (71)
T 2ku3_A           15 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVP---YIPEGQWLCRHCL   64 (71)
T ss_dssp             SSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCS---SCCSSCCCCHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCC---cCCCCCcCCccCc
Confidence            345799998764    579999999999999999987   5789999999995

>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A

Probab=99.05  E-value=2e-10  Score=71.56  Aligned_cols=48  Identities=44%  Similarity=1.173  Sum_probs=41.1

Q ss_pred             ccccccccccc--cCceEecCC--CC-CcccccccCCCCCCCCCCCeEeCccccCC
Q psy14606         10 EHQDYCEVCQQ--GGEIILCDT--CP-RAYHLCCLDPELDETPEGKWSCPRCVSDG   60 (145)
Q Consensus        10 ~~~~~C~~C~~--~g~l~~Cd~--C~-~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~   60 (145)
                      .+..+| +|++  .|+||.||.  |+ ..||..|++  +...|.+.|+|+.|....
T Consensus        14 ~~~~~C-~C~~~~~g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~   66 (71)
T 1wen_A           14 NEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES   66 (71)
T ss_dssp             TSCCCS-TTCCCSCSSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred             CCCCEE-ECCCCCCCCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence            455678 7998  689999999  88 699999999  778889999999998544

>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}

Probab=99.02  E-value=7.7e-11  Score=77.84  Aligned_cols=58  Identities=17%  Similarity=0.430  Sum_probs=42.3

Q ss_pred             ccccccCCCC--CCeecCCCCCCCCCCCCCCCCCCCCCCCCceeCCCCCCCCCCCchhhcccc
Q psy14606         77 VLCAKCKSPG--DQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCSCPPLPGKLEDMASL  137 (145)
Q Consensus        77 ~~C~vC~~~g--~~ll~C~~C~~~yH~~Cl~~~~~~~~p~~~w~C~~C~~~~~~~~~~~~~~~  137 (145)
                      ..| +|+..+  +.||+|+.|++|||..|+++++. .+|. .|+|+.|.-..+..+....+.+
T Consensus        29 vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~-~~p~-~w~C~~C~~~~~~~~~~~~~q~   88 (98)
T 2lv9_A           29 TRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQ-HIPD-TYLCERCQPRNLDKERAVLLQR   88 (98)
T ss_dssp             CCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTT-SCCS-SBCCTTTSSSCCCHHHHHHHHH
T ss_pred             EEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCcc-CCCC-CEECCCCcCCCCCHHHHHHHHH
Confidence            345 465532  38999999999999999999877 7775 8999999755554444433333

>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*

Probab=99.00  E-value=1.2e-10  Score=70.26  Aligned_cols=47  Identities=45%  Similarity=1.176  Sum_probs=39.1

Q ss_pred             cccccccccccc--cCceEecCC--CC-CcccccccCCCCCCCCCCCeEeCcccc
Q psy14606          9 TEHQDYCEVCQQ--GGEIILCDT--CP-RAYHLCCLDPELDETPEGKWSCPRCVS   58 (145)
Q Consensus         9 ~~~~~~C~~C~~--~g~l~~Cd~--C~-~~~H~~Cl~p~~~~~p~~~W~C~~C~~   58 (145)
                      ..+..+| +|++  .|+||.||.  |+ ..||..|++  +..+|.+.|+|+.|..
T Consensus         7 ~~e~~~C-~C~~~~~g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~   58 (60)
T 2vnf_A            7 PNEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ   58 (60)
T ss_dssp             --CCEET-TTTEECCSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred             CCCCCEE-ECCCcCCCCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence            3445678 8998  689999999  66 799999999  7888999999999974

>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A

Probab=98.99  E-value=5.1e-10  Score=69.68  Aligned_cols=46  Identities=26%  Similarity=0.834  Sum_probs=37.6

Q ss_pred             ccccccccCCCC-CCeecCCC--CC-CCCCCCCCCCCCCCCCCCCceeCCCCCC
Q psy14606         75 KEVLCAKCKSPG-DQFLLCET--CN-GSYHPHCLPDPIEGELPTSGWKCPKCSC  124 (145)
Q Consensus        75 ~~~~C~vC~~~g-~~ll~C~~--C~-~~yH~~Cl~~~~~~~~p~~~w~C~~C~~  124 (145)
                      ...+| +|+... ..||.|+.  |+ .|||..|++  ++ ..|.+.|+|+.|..
T Consensus        15 ~~~~C-~C~~~~~g~MI~CD~~~C~~~wfH~~Cvg--l~-~~p~g~w~Cp~C~~   64 (71)
T 1wen_A           15 EPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG--LT-TKPRGKWFCPRCSQ   64 (71)
T ss_dssp             SCCCS-TTCCCSCSSEECCSCSSCSCCCEETTTTT--CS-SCCSSCCCCTTTSS
T ss_pred             CCCEE-ECCCCCCCCEeEeeCCCCCCccEecccCC--cC-cCCCCCEECCCCCc
Confidence            34578 698832 38999999  87 799999999  55 77889999999973

>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*

Probab=98.98  E-value=1.7e-10  Score=69.35  Aligned_cols=46  Identities=52%  Similarity=1.324  Sum_probs=39.2

Q ss_pred             ccccccccccc--cCceEecCC--CC-CcccccccCCCCCCCCCCCeEeCcccc
Q psy14606         10 EHQDYCEVCQQ--GGEIILCDT--CP-RAYHLCCLDPELDETPEGKWSCPRCVS   58 (145)
Q Consensus        10 ~~~~~C~~C~~--~g~l~~Cd~--C~-~~~H~~Cl~p~~~~~p~~~W~C~~C~~   58 (145)
                      .+..+| +|++  .|+||.||.  |+ ..||..|++  ++..|.++|+|+.|+.
T Consensus         7 ~e~~yC-~C~~~~~g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~   57 (59)
T 3c6w_A            7 NEPTYC-LCHQVSYGEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ   57 (59)
T ss_dssp             -CCEET-TTTEECCSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred             CCCcEE-ECCCCCCCCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence            445578 8998  689999999  87 699999999  7788889999999974

>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}

Probab=98.93  E-value=3.3e-10  Score=68.70  Aligned_cols=46  Identities=46%  Similarity=1.223  Sum_probs=38.9

Q ss_pred             ccccccccccc--cCceEecCC--CC-CcccccccCCCCCCCCCCCeEeCcccc
Q psy14606         10 EHQDYCEVCQQ--GGEIILCDT--CP-RAYHLCCLDPELDETPEGKWSCPRCVS   58 (145)
Q Consensus        10 ~~~~~C~~C~~--~g~l~~Cd~--C~-~~~H~~Cl~p~~~~~p~~~W~C~~C~~   58 (145)
                      .+..+| +|++  .|+||.||.  |+ ..||..|++  +...|.+.|+|+.|+.
T Consensus         9 ~e~~yC-~C~~~~~g~MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~   59 (62)
T 2g6q_A            9 NEPTYC-LCNQVSYGEMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG   59 (62)
T ss_dssp             -CCEET-TTTEECCSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred             CCCcEE-ECCCCCCCCeeeeeCCCCCcccEecccCC--cCcCCCCCEECcCccc
Confidence            445678 8998  689999999  66 899999999  6778889999999974

>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2

Probab=98.91  E-value=2.1e-09  Score=69.90  Aligned_cols=46  Identities=26%  Similarity=0.834  Sum_probs=37.4

Q ss_pred             ccccccccCCCC-CCeecCCC--CC-CCCCCCCCCCCCCCCCCCCceeCCCCCC
Q psy14606         75 KEVLCAKCKSPG-DQFLLCET--CN-GSYHPHCLPDPIEGELPTSGWKCPKCSC  124 (145)
Q Consensus        75 ~~~~C~vC~~~g-~~ll~C~~--C~-~~yH~~Cl~~~~~~~~p~~~w~C~~C~~  124 (145)
                      ...+| +|+... ..||.|+.  |+ .|||..|++  ++ ..|.+.|+|+.|..
T Consensus        35 e~~yC-iC~~~~~g~MI~CD~~dC~~~WfH~~CVg--l~-~~p~g~W~Cp~C~~   84 (91)
T 1weu_A           35 EPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG--LT-TKPRGKWFCPRCSQ   84 (91)
T ss_dssp             CCBCS-TTCCBCCSCCCCCSCSSCSCCCCCSTTTT--CS-SCCCSSCCCTTTCC
T ss_pred             CCcEE-ECCCCCCCCEeEecCCCCCCCCEecccCC--cC-cCCCCCEECcCccC
Confidence            44578 798832 38999999  77 799999999  45 77889999999963

>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2

Probab=98.90  E-value=1.3e-09  Score=70.80  Aligned_cols=48  Identities=44%  Similarity=1.173  Sum_probs=40.6

Q ss_pred             ccccccccccc--cCceEecCC--CC-CcccccccCCCCCCCCCCCeEeCccccCC
Q psy14606         10 EHQDYCEVCQQ--GGEIILCDT--CP-RAYHLCCLDPELDETPEGKWSCPRCVSDG   60 (145)
Q Consensus        10 ~~~~~C~~C~~--~g~l~~Cd~--C~-~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~   60 (145)
                      ....+| +|++  .|+||.||.  |+ ..||..|++  +...|.+.|+|+.|+...
T Consensus        34 ~e~~yC-iC~~~~~g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~   86 (91)
T 1weu_A           34 NEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES   86 (91)
T ss_dssp             CCCBCS-TTCCBCCSCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred             CCCcEE-ECCCCCCCCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence            444578 9998  689999999  77 699999999  778888999999998544

>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}

Probab=98.84  E-value=2e-09  Score=70.96  Aligned_cols=44  Identities=27%  Similarity=0.751  Sum_probs=37.1

Q ss_pred             cccccccCceEecCCCCCcccccccCCCCCCCCCCCeEeCccccC
Q psy14606         15 CEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSD   59 (145)
Q Consensus        15 C~~C~~~g~l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~   59 (145)
                      |..+.++|.||.||.|++.||..|++|++..+|. .|+|+.|...
T Consensus        33 C~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~-~w~C~~C~~~   76 (98)
T 2lv9_A           33 CGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPD-TYLCERCQPR   76 (98)
T ss_dssp             TSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCS-SBCCTTTSSS
T ss_pred             CCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCC-CEECCCCcCC
Confidence            4444456889999999999999999998888875 7999999754

>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A

Probab=98.83  E-value=1.2e-10  Score=80.34  Aligned_cols=98  Identities=17%  Similarity=0.518  Sum_probs=65.7

Q ss_pred             eEecCCCCCcccccccCCCCCCCCC-CCeEeCccccCCCCCCCCCCCcccccccccccccCCCCCCeecCCCCCCCCCCC
Q psy14606         24 IILCDTCPRAYHLCCLDPELDETPE-GKWSCPRCVSDGPPETASPPAEEVKEKEVLCAKCKSPGDQFLLCETCNGSYHPH  102 (145)
Q Consensus        24 l~~Cd~C~~~~H~~Cl~p~~~~~p~-~~W~C~~C~~~~~~~~~~~~~~~~~~~~~~C~vC~~~g~~ll~C~~C~~~yH~~  102 (145)
                      .+.|..|++....+= ..++..-|. ..-+|..|.......   ....+++.+..+|.+|+.+| +|+.|+.|+++||..
T Consensus         8 ~~~Ct~Cg~~~~~~~-~~~~~~HPll~v~~C~~C~~~y~~~---~~~~d~Dg~~~~C~vC~dGG-~LlcCd~Cpr~Fc~~   82 (129)
T 3ql9_A            8 IVSCTACGQQVNHFQ-KDSIYRHPSLQVLICKNCFKYYMSD---DISRDSDGMDEQCRWCAEGG-NLICCDFCHNAFCKK   82 (129)
T ss_dssp             SCBCTTTCCBCCCCB-TTTEEECTTTCCEEEHHHHHHHHHS---CCCBCTTSCBSSCTTTCCCS-EEEECSSSSCEEEHH
T ss_pred             ceEeccCCCCCcccC-CCccccCCCcCceeCHhHHhhhhcc---ccccCCCCCCCcCeecCCCC-eeEecCCCchhhhHH
Confidence            456777777552110 011122232 457888887533221   12334566778999999999 999999999999999


Q ss_pred             CCCCCC-----CCCC--CCCceeCCCCCCCCC
Q psy14606        103 CLPDPI-----EGEL--PTSGWKCPKCSCPPL  127 (145)
Q Consensus       103 Cl~~~~-----~~~~--p~~~w~C~~C~~~~~  127 (145)
                      |+.+++     . ++  +.++|+|..|..+++
T Consensus        83 Cl~~~lg~~~l~-~i~~~~~~W~C~~C~~~pl  113 (129)
T 3ql9_A           83 CILRNLGRRELS-TIMDENNQWYCYICHPEPL  113 (129)
T ss_dssp             HHHHHTCHHHHH-HHTCTTSCCCCTTTCCGGG
T ss_pred             HhCCCcchhHHH-HhccCCCCeEcCCcCCHHH
Confidence            999863     2 33  788999999986555

>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*

Probab=98.79  E-value=1.9e-09  Score=69.91  Aligned_cols=46  Identities=33%  Similarity=0.985  Sum_probs=38.7

Q ss_pred             ccccccccccc--cCceEecCCCC---CcccccccCCCCCCCCCCCeEeCc-ccc
Q psy14606         10 EHQDYCEVCQQ--GGEIILCDTCP---RAYHLCCLDPELDETPEGKWSCPR-CVS   58 (145)
Q Consensus        10 ~~~~~C~~C~~--~g~l~~Cd~C~---~~~H~~Cl~p~~~~~p~~~W~C~~-C~~   58 (145)
                      ....+| +|++  .|+||.||.|+   ..||..|++  +...|.+.|+|+. |..
T Consensus        24 ~~~~yC-iC~~~~~g~MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~~   75 (90)
T 2jmi_A           24 QEEVYC-FCRNVSYGPMVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCKE   75 (90)
T ss_dssp             CCSCCS-TTTCCCSSSEECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred             CCCcEE-EeCCCCCCCEEEecCCCCccccCcCccCC--CCcCCCCCccCChhhcc
Confidence            444578 8996  57899999966   899999999  7778889999999 874

>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*

Probab=98.75  E-value=5.4e-10  Score=67.11  Aligned_cols=43  Identities=28%  Similarity=0.909  Sum_probs=35.8

Q ss_pred             cccccccCC--CCCCeecCCC--CC-CCCCCCCCCCCCCCCCCCCceeCCCCC
Q psy14606         76 EVLCAKCKS--PGDQFLLCET--CN-GSYHPHCLPDPIEGELPTSGWKCPKCS  123 (145)
Q Consensus        76 ~~~C~vC~~--~g~~ll~C~~--C~-~~yH~~Cl~~~~~~~~p~~~w~C~~C~  123 (145)
                      ..+| +|++  .| .||.|+.  |+ .|||..|++  ++ +.|.+.|+|+.|.
T Consensus         9 ~~yC-~C~~~~~g-~mi~CD~~~C~~~wfH~~Cvg--l~-~~p~~~w~Cp~C~   56 (59)
T 3c6w_A            9 PTYC-LCHQVSYG-EMIGCDNPDCPIEWFHFACVD--LT-TKPKGKWFCPRCV   56 (59)
T ss_dssp             CEET-TTTEECCS-EEEECSCTTCSSCEEETGGGT--CS-SCCSSCCCCHHHH
T ss_pred             CcEE-ECCCCCCC-CeeEeeCCCCCCCCEecccCC--cc-cCCCCCEECcCcc
Confidence            4477 6887  44 8999999  77 699999999  55 7788999999995

>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*

Probab=98.73  E-value=3.8e-09  Score=68.52  Aligned_cols=47  Identities=26%  Similarity=0.783  Sum_probs=37.0

Q ss_pred             ccccccccccCCCC-CCeecCCCCC---CCCCCCCCCCCCCCCCCCCceeCCC-CC
Q psy14606         73 KEKEVLCAKCKSPG-DQFLLCETCN---GSYHPHCLPDPIEGELPTSGWKCPK-CS  123 (145)
Q Consensus        73 ~~~~~~C~vC~~~g-~~ll~C~~C~---~~yH~~Cl~~~~~~~~p~~~w~C~~-C~  123 (145)
                      .....+| +|+... +.||.||.|+   .|||..|++  ++ ..|.+.|+|+. |.
T Consensus        23 ~~~~~yC-iC~~~~~g~MI~CD~c~C~~eWfH~~CVg--l~-~~p~~~W~Cp~cC~   74 (90)
T 2jmi_A           23 NQEEVYC-FCRNVSYGPMVACDNPACPFEWFHYGCVG--LK-QAPKGKWYCSKDCK   74 (90)
T ss_dssp             -CCSCCS-TTTCCCSSSEECCCSSSCSCSCEETTTSS--CS-SCTTSCCCSSHHHH
T ss_pred             CCCCcEE-EeCCCCCCCEEEecCCCCccccCcCccCC--CC-cCCCCCccCChhhc
Confidence            3445678 698732 3799999966   899999999  45 67889999999 85

>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}

Probab=98.71  E-value=9.1e-10  Score=66.76  Aligned_cols=43  Identities=30%  Similarity=0.871  Sum_probs=35.8

Q ss_pred             cccccccCC--CCCCeecCCC--CC-CCCCCCCCCCCCCCCCCCCceeCCCCC
Q psy14606         76 EVLCAKCKS--PGDQFLLCET--CN-GSYHPHCLPDPIEGELPTSGWKCPKCS  123 (145)
Q Consensus        76 ~~~C~vC~~--~g~~ll~C~~--C~-~~yH~~Cl~~~~~~~~p~~~w~C~~C~  123 (145)
                      ..+| +|++  .| .||.|+.  |+ .|||..|++.  + +.|.+.|+|+.|.
T Consensus        11 ~~yC-~C~~~~~g-~MI~CD~c~C~~~WfH~~Cvgl--~-~~p~~~w~Cp~C~   58 (62)
T 2g6q_A           11 PTYC-LCNQVSYG-EMIGCDNEQCPIEWFHFSCVSL--T-YKPKGKWYCPKCR   58 (62)
T ss_dssp             CEET-TTTEECCS-EEEECSCTTCSSCEEETGGGTC--S-SCCSSCCCCHHHH
T ss_pred             CcEE-ECCCCCCC-CeeeeeCCCCCcccEecccCCc--C-cCCCCCEECcCcc
Confidence            4578 6888  44 8999999  65 9999999994  5 6788999999995

>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*

Probab=98.71  E-value=9.9e-10  Score=66.16  Aligned_cols=44  Identities=27%  Similarity=0.881  Sum_probs=35.9

Q ss_pred             cccccccCCCC-CCeecCCC--CC-CCCCCCCCCCCCCCCCCCCceeCCCCC
Q psy14606         76 EVLCAKCKSPG-DQFLLCET--CN-GSYHPHCLPDPIEGELPTSGWKCPKCS  123 (145)
Q Consensus        76 ~~~C~vC~~~g-~~ll~C~~--C~-~~yH~~Cl~~~~~~~~p~~~w~C~~C~  123 (145)
                      ..+| +|++.. +.||.|+.  |+ .|||..|++  ++ ++|.+.|+|+.|.
T Consensus        10 ~~~C-~C~~~~~g~mi~CD~cdC~~~wfH~~Cvg--l~-~~p~g~w~C~~C~   57 (60)
T 2vnf_A           10 PTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG--LT-TKPRGKWFCPRCS   57 (60)
T ss_dssp             CEET-TTTEECCSEEEECSCTTCSSCEEETGGGT--CS-SCCSSCCCCHHHH
T ss_pred             CCEE-ECCCcCCCCEEEeCCCCCCCceEehhcCC--CC-cCCCCCEECcCcc
Confidence            4578 688732 38999999  66 899999999  55 7788999999985

>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}

Probab=98.67  E-value=5.5e-09  Score=70.70  Aligned_cols=97  Identities=26%  Similarity=0.510  Sum_probs=59.5

Q ss_pred             ccccccccccCceEecCCCCCcccccccCCCCCCCCCCCeEeCccccCCCCCCCCCCCcccccccccccccCC---CC--
Q psy14606         12 QDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPETASPPAEEVKEKEVLCAKCKS---PG--   86 (145)
Q Consensus        12 ~~~C~~C~~~g~l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~~~~~~~~~~~~~~~~~~~C~vC~~---~g--   86 (145)
                      -.+|.+|++.+    |+.|...||..+++++       .|.|..|+........ ...   ...-.+|..|..   ..  
T Consensus         7 C~~C~~C~~~~----C~~C~~c~~~~~~~~~-------~~~~~~c~~~~~~~~~-~~~---~~~c~~c~~c~~c~~~~~~   71 (117)
T 4bbq_A            7 CRKCKACVQGE----CGVCHYCRDMKKFGGP-------GRMKQSCVLRQCLAPR-LPH---SVTCSLCGEVDQNEETQDF   71 (117)
T ss_dssp             CSCSHHHHSCC----CSCSHHHHHSGGGTSC-------CCSCCCCGGGCCSSCB-CCT---TCBCTTTCCBCCHHHHCCG
T ss_pred             CCcCcCcCCcC----CCCCCCCcCCcccCCC-------Cccccchhheeecccc-ccc---cccccccCccccccccccc
Confidence            34677777653    9999999999999854       3666666543321100 000   001112222322   11  


Q ss_pred             -CCeecCCCCCCCCCCCCCCCCCCCCCC----CCceeCCCCCC
Q psy14606         87 -DQFLLCETCNGSYHPHCLPDPIEGELP----TSGWKCPKCSC  124 (145)
Q Consensus        87 -~~ll~C~~C~~~yH~~Cl~~~~~~~~p----~~~w~C~~C~~  124 (145)
                       ..||.|+.|+.|||..|++++.. .+.    ...|.|+.|..
T Consensus        72 ~~~m~~C~~C~~~~H~~C~~~~~~-~~~~~~~~~~~~C~~C~~  113 (117)
T 4bbq_A           72 EKKLMECCICNEIVHPGCLQMDGE-GLLNEELPNCWECPKCYQ  113 (117)
T ss_dssp             GGSCEEETTTCCEECGGGCCSCCC-CEECSSSSSEEECTTTC-
T ss_pred             CcceEEeeecCCeEECCCCCCCcc-ccccccCCCCeECCCCcC
Confidence             35899999999999999998644 222    23699999973

>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=98.59  E-value=8.8e-09  Score=62.58  Aligned_cols=49  Identities=22%  Similarity=0.610  Sum_probs=37.6

Q ss_pred             ccccccccCCCC---CCeecCCCCCCCCCCCCCCCCCCCCCC-CCceeCCCCCC
Q psy14606         75 KEVLCAKCKSPG---DQFLLCETCNGSYHPHCLPDPIEGELP-TSGWKCPKCSC  124 (145)
Q Consensus        75 ~~~~C~vC~~~g---~~ll~C~~C~~~yH~~Cl~~~~~~~~p-~~~w~C~~C~~  124 (145)
                      ...+|.+|+.+.   ..||+|+.|+.|||..|++.... ... ...|+|+.|..
T Consensus         5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~-~~~~~~~~~C~~C~~   57 (64)
T 1we9_A            5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPA-RAEHIKQYKCPSCSN   57 (64)
T ss_dssp             SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTT-GGGGCSSCCCHHHHT
T ss_pred             CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChh-HhcCCCcEECCCCcC
Confidence            344787888752   46999999999999999997544 332 36899999963

>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3

Probab=98.57  E-value=1.4e-08  Score=64.32  Aligned_cols=58  Identities=24%  Similarity=0.565  Sum_probs=45.9

Q ss_pred             Ccccccccccccccccc--ccCceEecCCCCCcccccccCCC------------CCCCCCCCeEeCccccCC
Q psy14606          3 HIQDLQTEHQDYCEVCQ--QGGEIILCDTCPRAYHLCCLDPE------------LDETPEGKWSCPRCVSDG   60 (145)
Q Consensus         3 ~~~~~~~~~~~~C~~C~--~~g~l~~Cd~C~~~~H~~Cl~p~------------~~~~p~~~W~C~~C~~~~   60 (145)
                      .+.+....+|++|.||.  ..++|+-|..|+|+||..||.+.            +...+...|.|+.|....
T Consensus         6 ~~~~e~~~~D~~C~VC~~~t~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~CenL~   77 (89)
T 1wil_A            6 SGPREPVVNDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDNIN   77 (89)
T ss_dssp             CCSCCCCCCSCCCTTTCCCCSSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCCCC
T ss_pred             cCcccCCCCCcccCccccccccceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccchhh
Confidence            34455668999999999  56789999999999999999874            122345789999997654

>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=98.55  E-value=1.7e-08  Score=62.78  Aligned_cols=51  Identities=25%  Similarity=0.562  Sum_probs=39.2

Q ss_pred             ccccccccccccCCCC---CCeecCCCCCCCCCCCCCCCCCCCCCCCCceeCCCCC
Q psy14606         71 EVKEKEVLCAKCKSPG---DQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCS  123 (145)
Q Consensus        71 ~~~~~~~~C~vC~~~g---~~ll~C~~C~~~yH~~Cl~~~~~~~~p~~~w~C~~C~  123 (145)
                      +.+....+| +|+...   ..||+|+.|..|||..|++.... ......|+|+.|.
T Consensus        11 ~~~~~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~-~~~~~~~~C~~C~   64 (72)
T 1wee_A           11 GVDNWKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNA-DALPSKFLCFRCI   64 (72)
T ss_dssp             SSCSSEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTT-SCCCSCCCCHHHH
T ss_pred             CCCCcceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCcc-ccCCCcEECCCcc
Confidence            344556688 598753   36999999999999999997644 3345799999995

>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}

Probab=98.54  E-value=1.9e-08  Score=61.97  Aligned_cols=48  Identities=25%  Similarity=0.555  Sum_probs=37.5

Q ss_pred             ccccccccccCCCC--CCeecCCCCCCCCCCCCCCCCCCCCCCCCceeCCCCC
Q psy14606         73 KEKEVLCAKCKSPG--DQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCS  123 (145)
Q Consensus        73 ~~~~~~C~vC~~~g--~~ll~C~~C~~~yH~~Cl~~~~~~~~p~~~w~C~~C~  123 (145)
                      +....+| +|+.+.  +.||+|+.|..|||..|++.... .++ +.|+|+.|.
T Consensus        16 ~~~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~-~~~-~~~~C~~C~   65 (68)
T 3o70_A           16 FQGLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKS-NVP-EVFVCQKCR   65 (68)
T ss_dssp             TTTCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTT-SCC-SSCCCHHHH
T ss_pred             CCCceEe-ECCCcCCCCCEEECCCCCccccccccCcCcc-cCC-CcEECCCCC
Confidence            3345578 688754  46999999999999999997654 444 699999985

>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2

Probab=98.41  E-value=3.1e-08  Score=62.71  Aligned_cols=51  Identities=24%  Similarity=0.566  Sum_probs=37.8

Q ss_pred             cccccccccCCCC---CCeecCCCCCCCCCCCCCCCCCCCCC-CCCceeCCCCCCCC
Q psy14606         74 EKEVLCAKCKSPG---DQFLLCETCNGSYHPHCLPDPIEGEL-PTSGWKCPKCSCPP  126 (145)
Q Consensus        74 ~~~~~C~vC~~~g---~~ll~C~~C~~~yH~~Cl~~~~~~~~-p~~~w~C~~C~~~~  126 (145)
                      ....+| +|+.+.   ..||+|+.|..|||..|++.... .. ....|+|+.|....
T Consensus        10 ~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~-~~~~~~~~~C~~C~~~~   64 (79)
T 1wep_A           10 LVPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEE-NAVDIDIYHCPDCEAVF   64 (79)
T ss_dssp             CCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHH-HHTTCSBBCCTTTTTTS
T ss_pred             CCccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccc-cccCCCeEECCCccccc
Confidence            344577 588753   47999999999999999996533 22 24689999997443

>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.40  E-value=2.2e-08  Score=62.03  Aligned_cols=44  Identities=25%  Similarity=0.751  Sum_probs=34.9

Q ss_pred             cccccccCCCC-CCeecCCCCC---CCCCCCCCCCCCCCCCCCCceeCCCCC
Q psy14606         76 EVLCAKCKSPG-DQFLLCETCN---GSYHPHCLPDPIEGELPTSGWKCPKCS  123 (145)
Q Consensus        76 ~~~C~vC~~~g-~~ll~C~~C~---~~yH~~Cl~~~~~~~~p~~~w~C~~C~  123 (145)
                      ..+|. |+... +.||.||.|+   .|||..|++.  + ..|.+.|+|+.|.
T Consensus         6 ~~yC~-C~~~~~g~MI~CD~cdC~~~WfH~~Cvgl--~-~~p~~~w~Cp~C~   53 (70)
T 1x4i_A            6 SGYCI-CNQVSYGEMVGCDNQDCPIEWFHYGCVGL--T-EAPKGKWYCPQCT   53 (70)
T ss_dssp             CCCST-TSCCCCSSEECCSCTTCSCCCEEHHHHTC--S-SCCSSCCCCHHHH
T ss_pred             CeEEE-cCCCCCCCEeEeCCCCCCccCCccccccc--C-cCCCCCEECCCCC
Confidence            34675 77632 3899999975   8999999994  4 6688999999995

>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*

Probab=98.33  E-value=5.3e-08  Score=56.82  Aligned_cols=44  Identities=20%  Similarity=0.640  Sum_probs=32.8

Q ss_pred             ccccCCCC---CCeecCC-CCCCCCCCCCCCCCCCCCCCCCceeCCCCC
Q psy14606         79 CAKCKSPG---DQFLLCE-TCNGSYHPHCLPDPIEGELPTSGWKCPKCS  123 (145)
Q Consensus        79 C~vC~~~g---~~ll~C~-~C~~~yH~~Cl~~~~~~~~p~~~w~C~~C~  123 (145)
                      |-+|+.+.   ..||+|+ .|+.|||..|++.... ...+..|+|+.|+
T Consensus         5 cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~-~~~~~~~~C~~C~   52 (52)
T 2kgg_A            5 AQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPE-MAENEDYICINCA   52 (52)
T ss_dssp             CTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHH-HHHHSCCCCSCC-
T ss_pred             CCCCcCccCCCCcEEEeCCCCCccCcccccCCCcc-ccCCCCEECCCCC
Confidence            55677643   4699999 8999999999996433 2224789999984

>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.32  E-value=1.2e-07  Score=58.63  Aligned_cols=46  Identities=41%  Similarity=1.042  Sum_probs=37.1

Q ss_pred             cccccccccc--cCceEecCCCC---CcccccccCCCCCCCCCCCeEeCccccC
Q psy14606         11 HQDYCEVCQQ--GGEIILCDTCP---RAYHLCCLDPELDETPEGKWSCPRCVSD   59 (145)
Q Consensus        11 ~~~~C~~C~~--~g~l~~Cd~C~---~~~H~~Cl~p~~~~~p~~~W~C~~C~~~   59 (145)
                      ...+|. |++  .|.||.||.|+   ..||..|++  +...|.+.|+|+.|...
T Consensus         5 ~~~yC~-C~~~~~g~MI~CD~cdC~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~~   55 (70)
T 1x4i_A            5 SSGYCI-CNQVSYGEMVGCDNQDCPIEWFHYGCVG--LTEAPKGKWYCPQCTAA   55 (70)
T ss_dssp             CCCCST-TSCCCCSSEECCSCTTCSCCCEEHHHHT--CSSCCSSCCCCHHHHHH
T ss_pred             CCeEEE-cCCCCCCCEeEeCCCCCCccCCcccccc--cCcCCCCCEECCCCCcc
Confidence            344674 775  57999999975   799999999  66778899999999744

>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*

Probab=98.19  E-value=2.4e-08  Score=60.98  Aligned_cols=50  Identities=22%  Similarity=0.612  Sum_probs=36.0

Q ss_pred             cccccccccCCC---CCCeecCC-CCCCCCCCCCCCCCCCC-----CCCCCceeCCCCC
Q psy14606         74 EKEVLCAKCKSP---GDQFLLCE-TCNGSYHPHCLPDPIEG-----ELPTSGWKCPKCS  123 (145)
Q Consensus        74 ~~~~~C~vC~~~---g~~ll~C~-~C~~~yH~~Cl~~~~~~-----~~p~~~w~C~~C~  123 (145)
                      .....|.+|+++   ++.+|+|+ .|.+|||..|++.....     .-|.+.|+|+.|.
T Consensus         6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~   64 (65)
T 2vpb_A            6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM   64 (65)
T ss_dssp             ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred             CCcCcCccCCCccCCCCCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCcc
Confidence            344578888875   25799999 99999999999964210     1366799999884

>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=98.18  E-value=6e-07  Score=54.33  Aligned_cols=51  Identities=22%  Similarity=0.545  Sum_probs=39.7

Q ss_pred             ccccccccccc----cCceEecCCCCCcccccccCCCCCCCC-CCCeEeCccccCC
Q psy14606         10 EHQDYCEVCQQ----GGEIILCDTCPRAYHLCCLDPELDETP-EGKWSCPRCVSDG   60 (145)
Q Consensus        10 ~~~~~C~~C~~----~g~l~~Cd~C~~~~H~~Cl~p~~~~~p-~~~W~C~~C~~~~   60 (145)
                      .++.+|.+|++    ++.||.||.|..-||..|++....... ...|+|+.|+...
T Consensus         4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k~   59 (64)
T 1we9_A            4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKS   59 (64)
T ss_dssp             SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTT
T ss_pred             CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCcC
Confidence            45568999986    356999999999999999995544332 3789999997543

>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}

Probab=98.17  E-value=2.6e-07  Score=53.82  Aligned_cols=43  Identities=26%  Similarity=0.644  Sum_probs=33.3

Q ss_pred             cccccCCCC--CCeecCCCCCCCCCCCCCCCCCCCCCCCCceeCCCCC
Q psy14606         78 LCAKCKSPG--DQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCS  123 (145)
Q Consensus        78 ~C~vC~~~g--~~ll~C~~C~~~yH~~Cl~~~~~~~~p~~~w~C~~C~  123 (145)
                      +|. |+.+.  ..||+|+.|..|||..|++.... .++ +.|+|+.|.
T Consensus         6 ~C~-C~~~~~~~~MI~Cd~C~~W~H~~Cvgi~~~-~~~-~~~~C~~C~   50 (52)
T 3o7a_A            6 TCF-CMKPFAGRPMIECNECHTWIHLSCAKIRKS-NVP-EVFVCQKCR   50 (52)
T ss_dssp             CST-TCCBCTTCCEEECTTTCCEEETTTTTCCGG-GCC-SSCCCHHHH
T ss_pred             EEE-eCCcCCCCCEEEcCCCCccccccccCCCcc-cCC-CcEECcCCC
Confidence            454 66643  48999999999999999997644 343 699999884

>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2

Probab=98.15  E-value=3.5e-08  Score=61.93  Aligned_cols=49  Identities=20%  Similarity=0.678  Sum_probs=37.1

Q ss_pred             ccccccccccCCCC--CCeecCCCCCCCCCCCCCCCCCCCCC-----CCCceeCCCCC
Q psy14606         73 KEKEVLCAKCKSPG--DQFLLCETCNGSYHPHCLPDPIEGEL-----PTSGWKCPKCS  123 (145)
Q Consensus        73 ~~~~~~C~vC~~~g--~~ll~C~~C~~~yH~~Cl~~~~~~~~-----p~~~w~C~~C~  123 (145)
                      +....+| +|+...  +.||+|+.|..|||..|++.... ..     ....|+|+.|.
T Consensus        13 d~~~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~-~~~~l~~~~~~~~C~~C~   68 (76)
T 1wem_A           13 DPNALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEA-RGRLLERNGEDYICPNCT   68 (76)
T ss_dssp             CTTCCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHH-HHHHHHHHTCCCCCHHHH
T ss_pred             CCCCCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchh-hhhhccCCCCeEECcCCc
Confidence            3345678 598864  47999999999999999996422 11     35789999995

>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}

Probab=98.11  E-value=1.4e-06  Score=53.52  Aligned_cols=45  Identities=24%  Similarity=0.645  Sum_probs=35.9

Q ss_pred             cccccccccc---CceEecCCCCCcccccccCCCCCCCCCCCeEeCcccc
Q psy14606         12 QDYCEVCQQG---GEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVS   58 (145)
Q Consensus        12 ~~~C~~C~~~---g~l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~   58 (145)
                      .-+| +|+..   +.||.||.|..-||..|++.....++ +.|+|+.|..
T Consensus        19 ~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~-~~~~C~~C~~   66 (68)
T 3o70_A           19 LVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVP-EVFVCQKCRD   66 (68)
T ss_dssp             CCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCC-SSCCCHHHHT
T ss_pred             ceEe-ECCCcCCCCCEEECCCCCccccccccCcCcccCC-CcEECCCCCC
Confidence            3467 88864   35999999999999999996655454 6899999974

>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}

Probab=98.11  E-value=2e-07  Score=62.05  Aligned_cols=46  Identities=26%  Similarity=0.717  Sum_probs=35.5

Q ss_pred             cccccCCC---CCCeecCC-CCCCCCCCCCCCCCCCC-----CCCCCceeCCCCC
Q psy14606         78 LCAKCKSP---GDQFLLCE-TCNGSYHPHCLPDPIEG-----ELPTSGWKCPKCS  123 (145)
Q Consensus        78 ~C~vC~~~---g~~ll~C~-~C~~~yH~~Cl~~~~~~-----~~p~~~w~C~~C~  123 (145)
                      .|.+|+.+   ++.+|+|+ .|+.|||..|++.....     ..|+..|+|+.|.
T Consensus         5 ~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~   59 (105)
T 2xb1_A            5 PCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCL   59 (105)
T ss_dssp             BCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred             CCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECcccc
Confidence            57888875   24799998 99999999999965210     1356899999995

>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}

Probab=98.08  E-value=1e-06  Score=54.04  Aligned_cols=47  Identities=28%  Similarity=0.557  Sum_probs=32.9

Q ss_pred             cccccccCCCC--CCeecCC--CCCCCCCCCCCCCCCCC---CCCCCceeCCCCC
Q psy14606         76 EVLCAKCKSPG--DQFLLCE--TCNGSYHPHCLPDPIEG---ELPTSGWKCPKCS  123 (145)
Q Consensus        76 ~~~C~vC~~~g--~~ll~C~--~C~~~yH~~Cl~~~~~~---~~p~~~w~C~~C~  123 (145)
                      ..+| +|+...  +.||+|+  .|..|||..|++.....   ......|+|+.|.
T Consensus        10 ~v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr   63 (68)
T 2rsd_A           10 KVRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCR   63 (68)
T ss_dssp             EECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHH
T ss_pred             CEEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCcc
Confidence            3567 487642  4799999  59999999999864220   1112479999984

>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2

Probab=98.06  E-value=5e-08  Score=61.11  Aligned_cols=47  Identities=30%  Similarity=0.810  Sum_probs=35.1

Q ss_pred             ccccccccCCC---CCCeecCCCCCCCCCCCCCCCCCCCCCC-CCceeCCCCC
Q psy14606         75 KEVLCAKCKSP---GDQFLLCETCNGSYHPHCLPDPIEGELP-TSGWKCPKCS  123 (145)
Q Consensus        75 ~~~~C~vC~~~---g~~ll~C~~C~~~yH~~Cl~~~~~~~~p-~~~w~C~~C~  123 (145)
                      ...+|. |+.+   +..||+|+.|..|||..|++.... ..+ ...|+|+.|.
T Consensus         9 ~~~yCi-C~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~-~~~~~~~~~C~~C~   59 (75)
T 3kqi_A            9 VPVYCV-CRLPYDVTRFMIECDACKDWFHGSCVGVEEE-EAPDIDIYHCPNCE   59 (75)
T ss_dssp             CCEETT-TTEECCTTSCEEECTTTCCEEEHHHHTCCTT-TGGGBSSCCCHHHH
T ss_pred             CeeEEE-CCCcCCCCCCEEEcCCCCCCEeccccccccc-ccCCCCEEECCCCc
Confidence            334664 7764   247999999999999999997544 333 2589999995

>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=98.00  E-value=3.2e-06  Score=52.34  Aligned_cols=50  Identities=24%  Similarity=0.564  Sum_probs=37.8

Q ss_pred             cccccccccccc---C-ceEecCCCCCcccccccCCCCCCCCCCCeEeCccccCC
Q psy14606         10 EHQDYCEVCQQG---G-EIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDG   60 (145)
Q Consensus        10 ~~~~~C~~C~~~---g-~l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~   60 (145)
                      ....+| +|+..   | .||.||.|..-||..|++..........|+|+.|....
T Consensus        14 ~~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~   67 (72)
T 1wee_A           14 NWKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELS   67 (72)
T ss_dssp             SSEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHC
T ss_pred             CcceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCC
Confidence            334568 69863   4 59999999999999999965433345789999997543

>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=97.99  E-value=5.4e-07  Score=56.77  Aligned_cols=47  Identities=26%  Similarity=0.564  Sum_probs=36.0

Q ss_pred             ccccccccCCC--CCCeecCC--CCCCCCCCCCCCCCCCCC-----CCCCceeCCCCC
Q psy14606         75 KEVLCAKCKSP--GDQFLLCE--TCNGSYHPHCLPDPIEGE-----LPTSGWKCPKCS  123 (145)
Q Consensus        75 ~~~~C~vC~~~--g~~ll~C~--~C~~~yH~~Cl~~~~~~~-----~p~~~w~C~~C~  123 (145)
                      ...+| +|+..  +..||+|+  .|..|||..|++.+.. .     .....|+|+.|.
T Consensus        15 ~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~-~~~~~~~~~~~~~C~~C~   70 (78)
T 1wew_A           15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDK-PMDGNPPLPESFYCEICR   70 (78)
T ss_dssp             CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCT-TTCSCSCSCSSCCCHHHH
T ss_pred             CCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccc-cccccccCCCCEECCCCC
Confidence            44578 58885  25899999  9999999999996533 2     123689999995

>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*

Probab=97.90  E-value=1.9e-07  Score=67.17  Aligned_cols=48  Identities=25%  Similarity=0.728  Sum_probs=36.0

Q ss_pred             ccccccccCCCC---CCeecCCCCCCCCCCCCCCCCCCCCCCCCceeCCCCC
Q psy14606         75 KEVLCAKCKSPG---DQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCS  123 (145)
Q Consensus        75 ~~~~C~vC~~~g---~~ll~C~~C~~~yH~~Cl~~~~~~~~p~~~w~C~~C~  123 (145)
                      ...+| +|+.++   +.||+|+.|++|||..|++.........+.|+|+.|.
T Consensus         7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~   57 (174)
T 2ri7_A            7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQ   57 (174)
T ss_dssp             CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHH
T ss_pred             CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCc
Confidence            34478 788753   4699999999999999998643301235799999995

>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=97.90  E-value=4.6e-06  Score=52.46  Aligned_cols=50  Identities=22%  Similarity=0.464  Sum_probs=37.6

Q ss_pred             cccccccccccc---CceEecC--CCCCcccccccCCCCCCC-----CCCCeEeCccccCC
Q psy14606         10 EHQDYCEVCQQG---GEIILCD--TCPRAYHLCCLDPELDET-----PEGKWSCPRCVSDG   60 (145)
Q Consensus        10 ~~~~~C~~C~~~---g~l~~Cd--~C~~~~H~~Cl~p~~~~~-----p~~~W~C~~C~~~~   60 (145)
                      ...-+| +|+..   |.||.||  .|..-||..|++......     ....|+|+.|+...
T Consensus        14 ~~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~   73 (78)
T 1wew_A           14 EIKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS   73 (78)
T ss_dssp             CCCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred             CCCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence            444578 79874   7899999  999999999999443321     23689999997543

>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*

Probab=97.85  E-value=1.2e-06  Score=62.88  Aligned_cols=50  Identities=30%  Similarity=0.686  Sum_probs=38.0

Q ss_pred             ccccccccccccc----CceEecCCCCCcccccccCCCCCC-CCCCCeEeCccccC
Q psy14606          9 TEHQDYCEVCQQG----GEIILCDTCPRAYHLCCLDPELDE-TPEGKWSCPRCVSD   59 (145)
Q Consensus         9 ~~~~~~C~~C~~~----g~l~~Cd~C~~~~H~~Cl~p~~~~-~p~~~W~C~~C~~~   59 (145)
                      ..+..+| +|+..    |.+|.||.|++.||..|++..... ...+.|+|+.|+..
T Consensus         5 ~~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~   59 (174)
T 2ri7_A            5 SDTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST   59 (174)
T ss_dssp             --CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred             CCCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence            3556789 99874    459999999999999999853322 23578999999754

>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}

Probab=97.85  E-value=6.8e-06  Score=50.31  Aligned_cols=46  Identities=22%  Similarity=0.499  Sum_probs=33.1

Q ss_pred             ccccccccc---cCceEecCC--CCCcccccccCCCCCCC----CCCCeEeCcccc
Q psy14606         12 QDYCEVCQQ---GGEIILCDT--CPRAYHLCCLDPELDET----PEGKWSCPRCVS   58 (145)
Q Consensus        12 ~~~C~~C~~---~g~l~~Cd~--C~~~~H~~Cl~p~~~~~----p~~~W~C~~C~~   58 (145)
                      .-.| +|+.   .|.||.||+  |..-||..|++......    ....|+|+.|+.
T Consensus        10 ~v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~   64 (68)
T 2rsd_A           10 KVRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL   64 (68)
T ss_dssp             EECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred             CEEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence            3456 6865   478999995  99999999998432221    124799999974

>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*

Probab=97.84  E-value=2.1e-06  Score=52.28  Aligned_cols=49  Identities=22%  Similarity=0.723  Sum_probs=36.4

Q ss_pred             ccccccccccccc----CceEecC-CCCCcccccccCCCCC------CCCCCCeEeCccc
Q psy14606          9 TEHQDYCEVCQQG----GEIILCD-TCPRAYHLCCLDPELD------ETPEGKWSCPRCV   57 (145)
Q Consensus         9 ~~~~~~C~~C~~~----g~l~~Cd-~C~~~~H~~Cl~p~~~------~~p~~~W~C~~C~   57 (145)
                      ......|.+|++.    ..+|.|| .|.+-||..|++....      ..|.+.|+|+.|.
T Consensus         5 ~~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~   64 (65)
T 2vpb_A            5 SDPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM   64 (65)
T ss_dssp             ----CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred             CCCcCcCccCCCccCCCCCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCcc
Confidence            3456689999974    3599999 9999999999994432      1366799999986

>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}

Probab=97.83  E-value=3.3e-06  Score=56.13  Aligned_cols=49  Identities=22%  Similarity=0.664  Sum_probs=38.7

Q ss_pred             cccccccccc----CceEecC-CCCCcccccccCCCCC------CCCCCCeEeCccccCC
Q psy14606         12 QDYCEVCQQG----GEIILCD-TCPRAYHLCCLDPELD------ETPEGKWSCPRCVSDG   60 (145)
Q Consensus        12 ~~~C~~C~~~----g~l~~Cd-~C~~~~H~~Cl~p~~~------~~p~~~W~C~~C~~~~   60 (145)
                      ...|.+|++.    ++++.|| .|..-||..|++....      ..|...|+|+.|....
T Consensus         3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~   62 (105)
T 2xb1_A            3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK   62 (105)
T ss_dssp             CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred             cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence            3579999875    6799998 9999999999994421      1366899999998654

>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3

Probab=97.78  E-value=2.7e-06  Score=53.80  Aligned_cols=48  Identities=23%  Similarity=0.715  Sum_probs=38.0

Q ss_pred             ccccccccCCCC-CCeecCCCCCCCCCCCCCCCC------------CCCCCCCCceeCCCCC
Q psy14606         75 KEVLCAKCKSPG-DQFLLCETCNGSYHPHCLPDP------------IEGELPTSGWKCPKCS  123 (145)
Q Consensus        75 ~~~~C~vC~~~g-~~ll~C~~C~~~yH~~Cl~~~------------~~~~~p~~~w~C~~C~  123 (145)
                      +...|.||..-. +.++.|..|.+.||..||.++            +. ..+...|.|+.|.
T Consensus        14 ~D~~C~VC~~~t~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~-A~T~~GWSC~~Ce   74 (89)
T 1wil_A           14 NDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEM-AHTETGWSCHYCD   74 (89)
T ss_dssp             CSCCCTTTCCCCSSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCC-CSSSSSCCCTTTC
T ss_pred             CCcccCccccccccceeccccccccccHhhcccccccccHHHHHHHHc-cCCCCCccccccc
Confidence            455899999532 489999999999999999874            22 4466799999994

>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2

Probab=97.75  E-value=2.4e-06  Score=53.44  Aligned_cols=49  Identities=27%  Similarity=0.639  Sum_probs=36.6

Q ss_pred             ccccccccccc---CceEecCCCCCcccccccCCCCCCC-----CCCCeEeCccccCC
Q psy14606         11 HQDYCEVCQQG---GEIILCDTCPRAYHLCCLDPELDET-----PEGKWSCPRCVSDG   60 (145)
Q Consensus        11 ~~~~C~~C~~~---g~l~~Cd~C~~~~H~~Cl~p~~~~~-----p~~~W~C~~C~~~~   60 (145)
                      +..+| +|++.   +.||.||.|..-||..|++......     ....|+|+.|....
T Consensus        15 ~~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~   71 (76)
T 1wem_A           15 NALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS   71 (76)
T ss_dssp             TCCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred             CCCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence            34567 79874   5799999999999999999433221     24689999997543

>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*

Probab=97.62  E-value=6.5e-06  Score=47.77  Aligned_cols=43  Identities=21%  Similarity=0.616  Sum_probs=31.4

Q ss_pred             ccccccc----CceEecC-CCCCcccccccCCCCCCCCCCCeEeCccc
Q psy14606         15 CEVCQQG----GEIILCD-TCPRAYHLCCLDPELDETPEGKWSCPRCV   57 (145)
Q Consensus        15 C~~C~~~----g~l~~Cd-~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~   57 (145)
                      |.+|++.    +.+|.|| .|..-||..|++..........|+|+.|+
T Consensus         5 cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~   52 (52)
T 2kgg_A            5 AQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA   52 (52)
T ss_dssp             CTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred             CCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence            5566653    4599999 89999999999944332224789999884

>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2

Probab=97.60  E-value=1.8e-05  Score=49.72  Aligned_cols=47  Identities=28%  Similarity=0.659  Sum_probs=35.7

Q ss_pred             cccccccc----cCceEecCCCCCcccccccCCCCCCC-CCCCeEeCccccCC
Q psy14606         13 DYCEVCQQ----GGEIILCDTCPRAYHLCCLDPELDET-PEGKWSCPRCVSDG   60 (145)
Q Consensus        13 ~~C~~C~~----~g~l~~Cd~C~~~~H~~Cl~p~~~~~-p~~~W~C~~C~~~~   60 (145)
                      .+| +|+.    ++.||.||.|..-||..|++...... ....|+|+.|....
T Consensus        13 ~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~   64 (79)
T 1wep_A           13 VYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF   64 (79)
T ss_dssp             CCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred             cEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence            456 8886    35799999999999999999443322 23689999998643

>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A

Probab=97.60  E-value=2e-05  Score=56.80  Aligned_cols=49  Identities=10%  Similarity=0.199  Sum_probs=33.3

Q ss_pred             ccccccCCCC---CCeecCCCCCCCCCCCCCCCCCCC---CCCCCceeCCCCCCCC
Q psy14606         77 VLCAKCKSPG---DQFLLCETCNGSYHPHCLPDPIEG---ELPTSGWKCPKCSCPP  126 (145)
Q Consensus        77 ~~C~vC~~~g---~~ll~C~~C~~~yH~~Cl~~~~~~---~~p~~~w~C~~C~~~~  126 (145)
                      .+|+ |+.+|   ..+|+|..|.+|||..|+......   -+-.+.+.|..|....
T Consensus         6 ~yCY-CG~~~~~~~~mLqC~~C~qWFH~~Cl~~~~~~~lp~~~fY~F~C~~C~~~g   60 (177)
T 3rsn_A            6 GSVD-EENGRQLGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFHCNVCHHSG   60 (177)
T ss_dssp             ------CTTCCTTSCEEECTTTCCEEEGGGGTCCCTTCCTTCCSEEEECTTTSTTS
T ss_pred             eEEE-cCCCCCCCceeEeeccccceecHHHhcccccCccccceeEEEEccccCCCC
Confidence            4677 88876   469999999999999999854321   1235689999997433

>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}

Probab=97.49  E-value=3.9e-05  Score=44.37  Aligned_cols=40  Identities=28%  Similarity=0.747  Sum_probs=32.1

Q ss_pred             cccc---cCceEecCCCCCcccccccCCCCCCCCCCCeEeCccc
Q psy14606         17 VCQQ---GGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCV   57 (145)
Q Consensus        17 ~C~~---~g~l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~   57 (145)
                      +|++   ++.||.||.|..-||..|++.....++ +.|+|+.|+
T Consensus         8 ~C~~~~~~~~MI~Cd~C~~W~H~~Cvgi~~~~~~-~~~~C~~C~   50 (52)
T 3o7a_A            8 FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVP-EVFVCQKCR   50 (52)
T ss_dssp             TTCCBCTTCCEEECTTTCCEEETTTTTCCGGGCC-SSCCCHHHH
T ss_pred             EeCCcCCCCCEEEcCCCCccccccccCCCcccCC-CcEECcCCC
Confidence            4654   358999999999999999996555444 689999986

>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A

Probab=97.31  E-value=1.9e-05  Score=57.38  Aligned_cols=49  Identities=22%  Similarity=0.591  Sum_probs=34.5

Q ss_pred             cccccCCC---C---CCeecCCCCCCCCCCCCCCCCCCC-----CCCC-CceeCCCCCCCC
Q psy14606         78 LCAKCKSP---G---DQFLLCETCNGSYHPHCLPDPIEG-----ELPT-SGWKCPKCSCPP  126 (145)
Q Consensus        78 ~C~vC~~~---g---~~ll~C~~C~~~yH~~Cl~~~~~~-----~~p~-~~w~C~~C~~~~  126 (145)
                      +|.+|+..   +   ..||.|+.|+.|||..|++.....     ..|+ ..|+|+.|....
T Consensus         4 ~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~   64 (183)
T 3lqh_A            4 FCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH   64 (183)
T ss_dssp             BCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred             cCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence            57778763   2   249999999999999999864200     1122 379999997443

>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*

Probab=97.24  E-value=4e-05  Score=63.58  Aligned_cols=39  Identities=26%  Similarity=0.435  Sum_probs=30.0

Q ss_pred             CCCeecCCCCCCCCCCCCCCCCCCCCCCCCceeCCCCCC
Q psy14606         86 GDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCSC  124 (145)
Q Consensus        86 g~~ll~C~~C~~~yH~~Cl~~~~~~~~p~~~w~C~~C~~  124 (145)
                      +..||.||.|+.|||..|++.........+.|+||.|..
T Consensus        55 ~~~mI~CD~C~~WfH~~CVgi~~~~a~~~~~y~Cp~C~~   93 (528)
T 3pur_A           55 DFQWIGCDSCQTWYHFLCSGLEQFEYYLYEKFFCPKCVP   93 (528)
T ss_dssp             TTSEEECTTTCCEEEGGGTTCCGGGTTTEEECCCTTTHH
T ss_pred             CCCEEECCCCCcCCCCcCCCCChhHhcCCCeEECcCCcC
Confidence            357999999999999999996543112236899999953

>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2

Probab=97.05  E-value=9.1e-05  Score=46.03  Aligned_cols=43  Identities=33%  Similarity=0.800  Sum_probs=33.2

Q ss_pred             ccccc----CceEecCCCCCcccccccCCCCCCCCC-CCeEeCccccC
Q psy14606         17 VCQQG----GEIILCDTCPRAYHLCCLDPELDETPE-GKWSCPRCVSD   59 (145)
Q Consensus        17 ~C~~~----g~l~~Cd~C~~~~H~~Cl~p~~~~~p~-~~W~C~~C~~~   59 (145)
                      +|+..    +.||.||.|..-||..|++......+. ..|+|+.|...
T Consensus        14 iC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~   61 (75)
T 3kqi_A           14 VCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT   61 (75)
T ss_dssp             TTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred             ECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCccc
Confidence            67763    479999999999999999954443332 68999999754

>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*

Probab=97.04  E-value=3.4e-05  Score=54.60  Aligned_cols=85  Identities=15%  Similarity=0.315  Sum_probs=59.0

Q ss_pred             CeEeCccccCCCCCCCCCCCcccccccccccccCCCCCCeecCC--CCCCCCCCCCCCCCCCC----C-CCCCceeCCCC
Q psy14606         50 KWSCPRCVSDGPPETASPPAEEVKEKEVLCAKCKSPGDQFLLCE--TCNGSYHPHCLPDPIEG----E-LPTSGWKCPKC  122 (145)
Q Consensus        50 ~W~C~~C~~~~~~~~~~~~~~~~~~~~~~C~vC~~~g~~ll~C~--~C~~~yH~~Cl~~~~~~----~-~p~~~w~C~~C  122 (145)
                      .-+|..|.......   .....++....+|.+|+.+| .|+.|+  .|.+.|-..|+...+..    + ...+.|.|-.|
T Consensus        56 v~lC~~Ck~~y~e~---~f~~DeDG~~~yC~wC~~Gg-~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C  131 (159)
T 3a1b_A           56 GGMCQNCKNCFLEC---AYQYDDDGYQSYCTICCGGR-EVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMC  131 (159)
T ss_dssp             SEECHHHHHHHHHH---TTCBCTTSSBSSCTTTSCCS-EEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTT
T ss_pred             chhhHHHHHHHhhc---ccccCCCCCcceeeEecCCC-eEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEec
Confidence            35677775332110   12234556677999999998 999999  89999999998754330    1 34579999999


Q ss_pred             CCCCCCCchhhccccc
Q psy14606        123 SCPPLPGKLEDMASLL  138 (145)
Q Consensus       123 ~~~~~~~~~~~~~~~~  138 (145)
                      .-.++.+-|++-..|+
T Consensus       132 ~P~~l~~ll~~R~dw~  147 (159)
T 3a1b_A          132 GHKGTYGLLRRREDWP  147 (159)
T ss_dssp             CSSCEETTEEBCTTHH
T ss_pred             CCccHHHHhhhhhhHH
Confidence            8666666777666664

>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*

Probab=96.93  E-value=1.4e-05  Score=66.13  Aligned_cols=49  Identities=22%  Similarity=0.682  Sum_probs=36.2

Q ss_pred             ccccccccccCCC---CCCeecCCCCCCCCCCCCCCCCCCCCCC-CCceeCCCCC
Q psy14606         73 KEKEVLCAKCKSP---GDQFLLCETCNGSYHPHCLPDPIEGELP-TSGWKCPKCS  123 (145)
Q Consensus        73 ~~~~~~C~vC~~~---g~~ll~C~~C~~~yH~~Cl~~~~~~~~p-~~~w~C~~C~  123 (145)
                      +....+| +|+.+   +..||+|+.|+.|||..|++.... ... .+.|+|+.|.
T Consensus        34 ~~~~~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~-~~~~~~~~~C~~C~   86 (488)
T 3kv5_D           34 PPPPVYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEH-HAVDIDLYHCPNCA   86 (488)
T ss_dssp             CCCCEET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGG-GGGGEEEBCCHHHH
T ss_pred             CCCCeEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcc-cccCCCEEECCCCc
Confidence            3344578 48874   347999999999999999996533 222 2589999995

>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*

Probab=96.92  E-value=0.00023  Score=50.30  Aligned_cols=52  Identities=31%  Similarity=0.832  Sum_probs=41.8

Q ss_pred             cccccccccccccCceEecC--CCCCcccccccCCCCCC------CCCCCeEeCccccCC
Q psy14606          9 TEHQDYCEVCQQGGEIILCD--TCPRAYHLCCLDPELDE------TPEGKWSCPRCVSDG   60 (145)
Q Consensus         9 ~~~~~~C~~C~~~g~l~~Cd--~C~~~~H~~Cl~p~~~~------~p~~~W~C~~C~~~~   60 (145)
                      +..+.+|.+|++||+|+.|+  .|.++|=..|+.-.+..      .....|.|--|....
T Consensus        76 DG~~~yC~wC~~Gg~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P~~  135 (159)
T 3a1b_A           76 DGYQSYCTICCGGREVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGHKG  135 (159)
T ss_dssp             TSSBSSCTTTSCCSEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCSSC
T ss_pred             CCCcceeeEecCCCeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCCcc
Confidence            35677999999999999999  89999999999844432      345789998887543

>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}

Probab=96.61  E-value=0.0011  Score=44.26  Aligned_cols=37  Identities=24%  Similarity=0.715  Sum_probs=28.5

Q ss_pred             ceEecCCCCCcccccccCCCCCCCC----CCCeEeCccccC
Q psy14606         23 EIILCDTCPRAYHLCCLDPELDETP----EGKWSCPRCVSD   59 (145)
Q Consensus        23 ~l~~Cd~C~~~~H~~Cl~p~~~~~p----~~~W~C~~C~~~   59 (145)
                      .|+.|+.|.+.||..|+++....+.    .+.|.|+.|...
T Consensus        74 ~m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~~  114 (117)
T 4bbq_A           74 KLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQE  114 (117)
T ss_dssp             SCEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC--
T ss_pred             ceEEeeecCCeEECCCCCCCccccccccCCCCeECCCCcCC
Confidence            4899999999999999997654332    346999999854

>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}

Probab=96.34  E-value=3e-05  Score=63.39  Aligned_cols=45  Identities=24%  Similarity=0.747  Sum_probs=33.4

Q ss_pred             cccccCCC---CCCeecCCCCCCCCCCCCCCCCCCCCCC-CCceeCCCCCC
Q psy14606         78 LCAKCKSP---GDQFLLCETCNGSYHPHCLPDPIEGELP-TSGWKCPKCSC  124 (145)
Q Consensus        78 ~C~vC~~~---g~~ll~C~~C~~~yH~~Cl~~~~~~~~p-~~~w~C~~C~~  124 (145)
                      +|. |+.+   ++.||+|+.|+.|||..|++.... ... .+.|+|+.|..
T Consensus         7 yCi-C~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~-~~~~~~~y~C~~C~~   55 (447)
T 3kv4_A            7 YCL-CRLPYDVTRFMIECDMCQDWFHGSCVGVEEE-KAADIDLYHCPNCEV   55 (447)
T ss_dssp             ETT-TTEECCTTSCEEECTTTCCEEEHHHHTCCHH-HHTTEEECCCHHHHH
T ss_pred             EEe-CCCcCCCCCCeEEcCCCCcccccccCCcCcc-cccCCCEEECCCCcc
Confidence            554 7763   247999999999999999996433 222 36899999953

>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A

Probab=96.12  E-value=0.0008  Score=48.73  Aligned_cols=48  Identities=23%  Similarity=0.698  Sum_probs=35.6

Q ss_pred             ccccccccc---C----ceEecCCCCCcccccccCCCCC------CCCC-CCeEeCccccCC
Q psy14606         13 DYCEVCQQG---G----EIILCDTCPRAYHLCCLDPELD------ETPE-GKWSCPRCVSDG   60 (145)
Q Consensus        13 ~~C~~C~~~---g----~l~~Cd~C~~~~H~~Cl~p~~~------~~p~-~~W~C~~C~~~~   60 (145)
                      .+|.+|+..   +    .||.||.|.+-||..|++....      ..|+ ..|+|+.|+...
T Consensus         3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~   64 (183)
T 3lqh_A            3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH   64 (183)
T ss_dssp             CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred             CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence            578899863   3    4999999999999999985321      1222 379999998654

>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}

Probab=96.05  E-value=0.00091  Score=45.15  Aligned_cols=38  Identities=21%  Similarity=0.579  Sum_probs=29.3

Q ss_pred             CeecCCCCCCCCCCCCCCCCC------CCCCC-CCceeCCCCCCCC
Q psy14606         88 QFLLCETCNGSYHPHCLPDPI------EGELP-TSGWKCPKCSCPP  126 (145)
Q Consensus        88 ~ll~C~~C~~~yH~~Cl~~~~------~~~~p-~~~w~C~~C~~~~  126 (145)
                      .||.|+.|..|||..|++...      . ++| ...|.|+.|....
T Consensus         1 ~mi~c~~c~~w~H~~c~~~~~~~~~~l~-~lp~~~~~~c~~C~~~~   45 (140)
T 2ku7_A            1 SMMQCGKCDRWVHSKCENLSDEMYEILS-NLPESVAYTCVNCTERH   45 (140)
T ss_dssp             CCCCCSCCSSCHHHHHCCCCHHHHHHHH-SSCTTTTCCSSCCTTTS
T ss_pred             CccccccCCCccCCcccccCHHHHHHHh-hccccceeeCccccccc
Confidence            389999999999999998642      3 444 3479999997543

>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*

Probab=95.98  E-value=0.0026  Score=52.79  Aligned_cols=36  Identities=39%  Similarity=0.728  Sum_probs=29.1

Q ss_pred             eEecCCCCCcccccccCCCCCCCC-CCCeEeCccccC
Q psy14606         24 IILCDTCPRAYHLCCLDPELDETP-EGKWSCPRCVSD   59 (145)
Q Consensus        24 l~~Cd~C~~~~H~~Cl~p~~~~~p-~~~W~C~~C~~~   59 (145)
                      +|.||.|..-||..|++....... .+.|+|+.|...
T Consensus        58 mI~CD~C~~WfH~~CVgi~~~~a~~~~~y~Cp~C~~~   94 (528)
T 3pur_A           58 WIGCDSCQTWYHFLCSGLEQFEYYLYEKFFCPKCVPH   94 (528)
T ss_dssp             EEECTTTCCEEEGGGTTCCGGGTTTEEECCCTTTHHH
T ss_pred             EEECCCCCcCCCCcCCCCChhHhcCCCeEECcCCcCC
Confidence            899999999999999995443333 378999999753

>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*

Probab=95.60  E-value=0.00051  Score=55.04  Aligned_cols=84  Identities=19%  Similarity=0.360  Sum_probs=55.8

Q ss_pred             eEeCccccCCCCCCCCCCCcccccccccccccCCCCCCeecCC--CCCCCCCCCCCCCCCCC----C-CCCCceeCCCCC
Q psy14606         51 WSCPRCVSDGPPETASPPAEEVKEKEVLCAKCKSPGDQFLLCE--TCNGSYHPHCLPDPIEG----E-LPTSGWKCPKCS  123 (145)
Q Consensus        51 W~C~~C~~~~~~~~~~~~~~~~~~~~~~C~vC~~~g~~ll~C~--~C~~~yH~~Cl~~~~~~----~-~p~~~w~C~~C~  123 (145)
                      -+|..|.......   .....++....+|..|+.+| +++.|+  .|.+.|-..|+...+..    + ...+.|.|-.|.
T Consensus        71 ~lC~~Ck~~y~~~---~f~~D~DG~~~yCr~C~~Gg-~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~  146 (386)
T 2pv0_B           71 GICAPCKDKFLDA---LFLYDDDGYQSYCSICCSGE-TLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCL  146 (386)
T ss_dssp             BCCHHHHHHHHTT---TTCBCSSSSBCSCTTTCCCS-SCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTS
T ss_pred             chhhHHHHHHhcc---CcccCCCCCcccceEcCCCC-eEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcC
Confidence            5677775432211   12233556677999999998 999999  99999999999764320    1 123689999998


Q ss_pred             CCCCCCchhhccccc
Q psy14606        124 CPPLPGKLEDMASLL  138 (145)
Q Consensus       124 ~~~~~~~~~~~~~~~  138 (145)
                      -.++.+-+++-..|+
T Consensus       147 p~p~~~ll~~r~~w~  161 (386)
T 2pv0_B          147 PSSRSGLLQRRRKWR  161 (386)
T ss_dssp             SCCEETTEEBCSSHH
T ss_pred             CcchHhhhhhhhhHH
Confidence            666555554434443

>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*

Probab=95.46  E-value=0.0018  Score=51.86  Aligned_cols=52  Identities=27%  Similarity=0.835  Sum_probs=42.4

Q ss_pred             cccccccccccccCceEecC--CCCCcccccccCCCCCC------CCCCCeEeCccccCC
Q psy14606          9 TEHQDYCEVCQQGGEIILCD--TCPRAYHLCCLDPELDE------TPEGKWSCPRCVSDG   60 (145)
Q Consensus         9 ~~~~~~C~~C~~~g~l~~Cd--~C~~~~H~~Cl~p~~~~------~p~~~W~C~~C~~~~   60 (145)
                      +..+.+|.+|+++|+|++|+  .|.++|=..|+.-.+..      .....|.|--|....
T Consensus        90 DG~~~yCr~C~~Gg~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~p  149 (386)
T 2pv0_B           90 DGYQSYCSICCSGETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPSS  149 (386)
T ss_dssp             SSSBCSCTTTCCCSSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSCC
T ss_pred             CCCcccceEcCCCCeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCcc
Confidence            45677999999999999999  99999999999844422      124789999998664

>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*

Probab=94.48  E-value=0.0048  Score=50.97  Aligned_cols=45  Identities=33%  Similarity=0.772  Sum_probs=34.3

Q ss_pred             ccccccc----cCceEecCCCCCcccccccCCCCCCCC-CCCeEeCccccC
Q psy14606         14 YCEVCQQ----GGEIILCDTCPRAYHLCCLDPELDETP-EGKWSCPRCVSD   59 (145)
Q Consensus        14 ~C~~C~~----~g~l~~Cd~C~~~~H~~Cl~p~~~~~p-~~~W~C~~C~~~   59 (145)
                      +| +|+.    ++.||.||.|..-||..|++....... .+.|+|+.|...
T Consensus        39 yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~   88 (488)
T 3kv5_D           39 YC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVL   88 (488)
T ss_dssp             ET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHH
T ss_pred             EE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCC
Confidence            46 8886    356999999999999999994433322 268999999743

>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}

Probab=93.93  E-value=0.0043  Score=50.68  Aligned_cols=43  Identities=26%  Similarity=0.629  Sum_probs=33.0

Q ss_pred             cccc----cCceEecCCCCCcccccccCCCCCCCC-CCCeEeCccccC
Q psy14606         17 VCQQ----GGEIILCDTCPRAYHLCCLDPELDETP-EGKWSCPRCVSD   59 (145)
Q Consensus        17 ~C~~----~g~l~~Cd~C~~~~H~~Cl~p~~~~~p-~~~W~C~~C~~~   59 (145)
                      +|++    +|.||.||.|..-||..|++....... .+.|+|+.|...
T Consensus         9 iC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~   56 (447)
T 3kv4_A            9 LCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVL   56 (447)
T ss_dssp             TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHHH
T ss_pred             eCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCccc
Confidence            6765    367999999999999999994433322 268999999654

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=93.89  E-value=0.00042  Score=46.51  Aligned_cols=111  Identities=20%  Similarity=0.511  Sum_probs=68.9

Q ss_pred             cccccccccccc-------CceEecCCCCCcccccccCCCCCCCCCCCeEeCccccCCCCCCCCCCCccccccccccccc
Q psy14606         10 EHQDYCEVCQQG-------GEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPETASPPAEEVKEKEVLCAKC   82 (145)
Q Consensus        10 ~~~~~C~~C~~~-------g~l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~~~~~~~~~~~~~~~~~~~C~vC   82 (145)
                      .++..|.||.+.       ++.+.-..|+..||..|+...+...    -.||.|+.........  ....+.....|.+|
T Consensus         5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~~~~~~l~--~l~i~~~~~~C~iC   78 (133)
T 4ap4_A            5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA----NTCPTCRKKINHKRYH--PIYIGSGTVSCPIC   78 (133)
T ss_dssp             CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTC----SBCTTTCCBCTTTCEE--ECBCSSSSCBCTTT
T ss_pred             CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhC----CCCCCCCCcCcccccc--ccccCCCCCCCCCC
Confidence            345689999863       3344556899999999998654432    3899998654321110  01122344579999


Q ss_pred             CCCC------CCeecCCCCCCCCCCCCCCCCCCCCCCCCceeCCCCCCCCCCCch
Q psy14606         83 KSPG------DQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCSCPPLPGKL  131 (145)
Q Consensus        83 ~~~g------~~ll~C~~C~~~yH~~Cl~~~~~~~~p~~~w~C~~C~~~~~~~~~  131 (145)
                      ...-      ...+....|+-.||..|+..-+.     ....||.|...-.+..+
T Consensus        79 ~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~-----~~~~CP~Cr~~~~~~~~  128 (133)
T 4ap4_A           79 MDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK-----NANTCPTCRKKINHKRY  128 (133)
T ss_dssp             CCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHH-----HCSBCTTTCCBCCGGGE
T ss_pred             CCccccccccCcceEeCCCCChhhHHHHHHHHH-----cCCCCCCCCCcCChhcc
Confidence            8732      12334557888999999886433     23489999754443333

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=92.85  E-value=0.019  Score=34.06  Aligned_cols=49  Identities=27%  Similarity=0.578  Sum_probs=33.1

Q ss_pred             ccccccccccccccc---CceEecCCCCCcccccccCCCCCCCCCCCeEeCccccC
Q psy14606          7 LQTEHQDYCEVCQQG---GEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSD   59 (145)
Q Consensus         7 ~~~~~~~~C~~C~~~---g~l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~   59 (145)
                      .+...+..|.||.+.   ++.+.--.|+..||..|+...+...    ..||.|+..
T Consensus         9 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~----~~CP~Cr~~   60 (69)
T 2kiz_A            9 TEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITN----KKCPICRVD   60 (69)
T ss_dssp             CSTTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHC----SBCTTTCSB
T ss_pred             CcCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcC----CCCcCcCcc
Confidence            334566789999763   3444445699999999998544332    358888754

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=92.51  E-value=0.057  Score=30.29  Aligned_cols=45  Identities=29%  Similarity=0.619  Sum_probs=30.8

Q ss_pred             cccccccccccc---C-ceEecCCCCCcccccccCCCCCCCCCCCeEeCcccc
Q psy14606         10 EHQDYCEVCQQG---G-EIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVS   58 (145)
Q Consensus        10 ~~~~~C~~C~~~---g-~l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~   58 (145)
                      .++..|.||.+.   + ..+.-..|+..||..|+...+..    ...||.|+.
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~----~~~CP~Cr~   51 (55)
T 1iym_A            3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS----HSTCPLCRL   51 (55)
T ss_dssp             CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT----CCSCSSSCC
T ss_pred             CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc----CCcCcCCCC
Confidence            345689999874   2 24444469999999999865443    346888764

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.01  E-value=0.068  Score=32.81  Aligned_cols=46  Identities=24%  Similarity=0.565  Sum_probs=33.1

Q ss_pred             ccccccccccC-ceEecCCCCCcccccccCCCCCCCCCCCeEeCccccC
Q psy14606         12 QDYCEVCQQGG-EIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSD   59 (145)
Q Consensus        12 ~~~C~~C~~~g-~l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~   59 (145)
                      .+.|.||.+.- .-+.|..|...||..|+...+...  ..-.||.|+..
T Consensus        15 i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~--~~~~CP~Cr~~   61 (74)
T 2ct0_A           15 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSN--AEPRCPHCNDY   61 (74)
T ss_dssp             SCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTC--SSCCCTTTCSC
T ss_pred             CCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhc--CCCCCCCCcCc
Confidence            36799999742 335788999999999998666433  22468888743

>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A

Probab=90.45  E-value=0.28  Score=35.09  Aligned_cols=41  Identities=15%  Similarity=0.432  Sum_probs=28.5

Q ss_pred             ccccCc----eEecCCCCCcccccccCCCCCC-CC---CCCeEeCcccc
Q psy14606         18 CQQGGE----IILCDTCPRAYHLCCLDPELDE-TP---EGKWSCPRCVS   58 (145)
Q Consensus        18 C~~~g~----l~~Cd~C~~~~H~~Cl~p~~~~-~p---~~~W~C~~C~~   58 (145)
                      |++.|+    ++.|..|.+-||..|+...... +|   .-.+.|..|..
T Consensus        10 CG~~~~~~~~mLqC~~C~qWFH~~Cl~~~~~~~lp~~~fY~F~C~~C~~   58 (177)
T 3rsn_A           10 EENGRQLGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFHCNVCHH   58 (177)
T ss_dssp             -CTTCCTTSCEEECTTTCCEEEGGGGTCCCTTCCTTCCSEEEECTTTST
T ss_pred             cCCCCCCCceeEeeccccceecHHHhcccccCccccceeEEEEccccCC
Confidence            666654    8999999999999999844332 23   12567777764

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=90.38  E-value=0.13  Score=30.99  Aligned_cols=48  Identities=29%  Similarity=0.585  Sum_probs=32.0

Q ss_pred             ccccccccccccc---CceEecCCCCCcccccccCCCCCCCCCCCeEeCccccCC
Q psy14606          9 TEHQDYCEVCQQG---GEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDG   60 (145)
Q Consensus         9 ~~~~~~C~~C~~~---g~l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~   60 (145)
                      ...+..|.||.+.   ++.+.=-.|...||..|+...+..    ...||.|+...
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~----~~~CP~Cr~~~   62 (78)
T 2ect_A           12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ----HDSCPVCRKSL   62 (78)
T ss_dssp             SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT----TCSCTTTCCCC
T ss_pred             CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc----CCcCcCcCCcc
Confidence            3556789999764   333322359999999999865432    24688887553

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=89.79  E-value=0.091  Score=32.35  Aligned_cols=46  Identities=24%  Similarity=0.746  Sum_probs=30.9

Q ss_pred             ccccccccccccC--------------c-eEecCCCCCcccccccCCCCCCCCCCCeEeCccccC
Q psy14606         10 EHQDYCEVCQQGG--------------E-IILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSD   59 (145)
Q Consensus        10 ~~~~~C~~C~~~g--------------~-l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~   59 (145)
                      ..++.|.||.+.-              + ++.=..|+..||..|+...+...    -.||.|+..
T Consensus        13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~----~~CP~CR~~   73 (81)
T 2ecl_A           13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN----NRCPLCQQD   73 (81)
T ss_dssp             CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC----CBCTTTCCB
T ss_pred             CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC----CCCCCcCCC
Confidence            4566788887632              2 33333699999999999765543    268888743

>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}

Probab=89.57  E-value=0.12  Score=34.32  Aligned_cols=37  Identities=22%  Similarity=0.556  Sum_probs=28.7

Q ss_pred             eEecCCCCCcccccccCCCC------CCCC-CCCeEeCccccCC
Q psy14606         24 IILCDTCPRAYHLCCLDPEL------DETP-EGKWSCPRCVSDG   60 (145)
Q Consensus        24 l~~Cd~C~~~~H~~Cl~p~~------~~~p-~~~W~C~~C~~~~   60 (145)
                      ||.||.|...||..|.+...      ...| ...|.|+.|....
T Consensus         2 mi~c~~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~~   45 (140)
T 2ku7_A            2 MMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH   45 (140)
T ss_dssp             CCCCSCCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTTS
T ss_pred             ccccccCCCccCCcccccCHHHHHHHhhccccceeeCccccccc
Confidence            78899999999999998432      2345 4579999997654

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=89.30  E-value=0.092  Score=33.01  Aligned_cols=46  Identities=22%  Similarity=0.534  Sum_probs=31.3

Q ss_pred             cccccccccccc---CceEecCCCCCcccccccCCCCCCCCCCCeEeCccccC
Q psy14606         10 EHQDYCEVCQQG---GEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSD   59 (145)
Q Consensus        10 ~~~~~C~~C~~~---g~l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~   59 (145)
                      ..+..|.||.+.   ++.+.--.|+..||..|+...+..    .-.||.|+..
T Consensus        38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~----~~~CP~Cr~~   86 (91)
T 2l0b_A           38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK----SGTCPVCRCM   86 (91)
T ss_dssp             SSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT----TCBCTTTCCB
T ss_pred             CCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc----CCcCcCcCcc
Confidence            455689999863   343333459999999999865543    2368888743

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=88.39  E-value=0.072  Score=29.81  Aligned_cols=44  Identities=23%  Similarity=0.589  Sum_probs=30.6

Q ss_pred             ccccccccccc----CceEecCCCCCcccccccCCCCCCCCCCCeEeCcccc
Q psy14606         11 HQDYCEVCQQG----GEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVS   58 (145)
Q Consensus        11 ~~~~C~~C~~~----g~l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~   58 (145)
                      .+..|.||.+.    ++.+.-..|+..||..|+...+...    ..||.|+.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~   51 (55)
T 2ecm_A            4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG----YRCPLCSG   51 (55)
T ss_dssp             CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT----CCCTTSCC
T ss_pred             CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC----CcCCCCCC
Confidence            45689999874    2345566799999999998544322    56777764

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.24  E-value=0.069  Score=32.13  Aligned_cols=46  Identities=28%  Similarity=0.676  Sum_probs=31.7

Q ss_pred             cccccccccccc---CceEecCCCCCcccccccCCCCCCCCCCCeEeCccccC
Q psy14606         10 EHQDYCEVCQQG---GEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSD   59 (145)
Q Consensus        10 ~~~~~C~~C~~~---g~l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~   59 (145)
                      ..+..|.||.+.   ++.+..-.|...||..|+...+..    ...||.|+..
T Consensus        21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~----~~~CP~Cr~~   69 (75)
T 1x4j_A           21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA----NRTCPICRAD   69 (75)
T ss_dssp             SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH----CSSCTTTCCC
T ss_pred             CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc----CCcCcCcCCc
Confidence            455689999963   444445569999999999865432    2368888743

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=88.00  E-value=0.092  Score=32.56  Aligned_cols=49  Identities=22%  Similarity=0.523  Sum_probs=31.2

Q ss_pred             cccccccccccc----CceEe---cCCCCCcccccccCCCCCCCCCCCeEeCccccCC
Q psy14606         10 EHQDYCEVCQQG----GEIIL---CDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDG   60 (145)
Q Consensus        10 ~~~~~C~~C~~~----g~l~~---Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~   60 (145)
                      ..++.|.||.+.    +.|+.   |.+....||..||...+...  +...|+.|+...
T Consensus        13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~--~~~~CplCr~~~   68 (80)
T 2d8s_A           13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSS--DTRCCELCKYEF   68 (80)
T ss_dssp             TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHH--CCSBCSSSCCBC
T ss_pred             CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhC--CCCCCCCCCCee
Confidence            456789999864    23432   22234999999998655431  335788887543

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=87.66  E-value=0.079  Score=31.68  Aligned_cols=48  Identities=25%  Similarity=0.481  Sum_probs=31.7

Q ss_pred             ccccccccccccc---CceEecCCCCCcccccccCCCCCCCCCCCeEeCccccCC
Q psy14606          9 TEHQDYCEVCQQG---GEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDG   60 (145)
Q Consensus         9 ~~~~~~C~~C~~~---g~l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~   60 (145)
                      ...+..|.||.+.   +..+.--.|...||..|+...+...    ..||.|+...
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~----~~CP~Cr~~~   62 (74)
T 2ep4_A           12 LNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR----KVCPLCNMPV   62 (74)
T ss_dssp             CCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC----SBCTTTCCBC
T ss_pred             CCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC----CcCCCcCccc
Confidence            3556789999875   2222222599999999998544322    2688887543

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=86.84  E-value=0.052  Score=31.86  Aligned_cols=48  Identities=23%  Similarity=0.343  Sum_probs=29.9

Q ss_pred             ccccccccccccC--ce-Ee--cCCCCCcccccccCCCCCCCCCCCeEeCccccC
Q psy14606         10 EHQDYCEVCQQGG--EI-IL--CDTCPRAYHLCCLDPELDETPEGKWSCPRCVSD   59 (145)
Q Consensus        10 ~~~~~C~~C~~~g--~l-~~--Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~   59 (145)
                      ...+.|.||.+++  .| .-  |.+.-+.||..||...+..  ++++.|+.|...
T Consensus         4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~--~~~~~C~~C~~~   56 (60)
T 1vyx_A            4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTI--SRNTACQICGVV   56 (60)
T ss_dssp             CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHH--HTCSBCTTTCCB
T ss_pred             CCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHh--CCCCccCCCCCe
Confidence            4556899998643  23 22  2334459999999865532  234677777643

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=86.78  E-value=0.24  Score=29.29  Aligned_cols=46  Identities=15%  Similarity=0.351  Sum_probs=30.6

Q ss_pred             cccccccccccccC-ceEecCCCCCcccccccCCCCCCCCCCCeEeCccccC
Q psy14606          9 TEHQDYCEVCQQGG-EIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSD   59 (145)
Q Consensus         9 ~~~~~~C~~C~~~g-~l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~   59 (145)
                      ...+..|.||.+.- +-+.- .|+..||..|+...+..    ...||.|+..
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~-~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~   58 (71)
T 2d8t_A           12 SLTVPECAICLQTCVHPVSL-PCKHVFCYLCVKGASWL----GKRCALCRQE   58 (71)
T ss_dssp             SSSCCBCSSSSSBCSSEEEE-TTTEEEEHHHHHHCTTC----SSBCSSSCCB
T ss_pred             CCCCCCCccCCcccCCCEEc-cCCCHHHHHHHHHHHHC----CCcCcCcCch
Confidence            35566899998753 22222 69999999999754432    2578888744

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=86.38  E-value=0.1  Score=33.93  Aligned_cols=51  Identities=24%  Similarity=0.507  Sum_probs=33.4

Q ss_pred             ccccccccccccC------------------ceEecCCCCCcccccccCCCCCCCC-CCCeEeCccccCC
Q psy14606         10 EHQDYCEVCQQGG------------------EIILCDTCPRAYHLCCLDPELDETP-EGKWSCPRCVSDG   60 (145)
Q Consensus        10 ~~~~~C~~C~~~g------------------~l~~Cd~C~~~~H~~Cl~p~~~~~p-~~~W~C~~C~~~~   60 (145)
                      ..++.|.||.+.-                  ..+.-..|...||..|+...+.... .....||.|+...
T Consensus        23 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~   92 (114)
T 1v87_A           23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIY   92 (114)
T ss_dssp             CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBS
T ss_pred             CCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCcc
Confidence            3456899997641                  1222446999999999986653221 3456799887554

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.00  E-value=0.13  Score=31.58  Aligned_cols=45  Identities=29%  Similarity=0.549  Sum_probs=32.3

Q ss_pred             cccccccCCCCCCeecCCCCCCCCCCCCCCCCCCCCCCCCceeCCCCC
Q psy14606         76 EVLCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCS  123 (145)
Q Consensus        76 ~~~C~vC~~~g~~ll~C~~C~~~yH~~Cl~~~~~~~~p~~~w~C~~C~  123 (145)
                      ...|.+|...-..-+.|..|...||..|+..-+. ..  ..-.||.|.
T Consensus        15 i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~-~~--~~~~CP~Cr   59 (74)
T 2ct0_A           15 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQ-SN--AEPRCPHCN   59 (74)
T ss_dssp             SCBCSSSCCBCSSSEECSSSCCEECHHHHHHHST-TC--SSCCCTTTC
T ss_pred             CCcCcchhhHcccCCccCCCCchhhHHHHHHHHH-hc--CCCCCCCCc
Confidence            4579999985433467889999999999985444 22  225799996

>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}

Probab=85.33  E-value=0.16  Score=32.08  Aligned_cols=27  Identities=30%  Similarity=0.822  Sum_probs=22.1

Q ss_pred             cccccCCC--CCCeecCC--CCCCCCCCCCCC
Q psy14606         78 LCAKCKSP--GDQFLLCE--TCNGSYHPHCLP  105 (145)
Q Consensus        78 ~C~vC~~~--g~~ll~C~--~C~~~yH~~Cl~  105 (145)
                      .|.+|+..  | ..|+|.  .|.++||+.|-.
T Consensus        19 ~C~iC~~~~~G-AciqC~~~~C~~~fHv~CA~   49 (87)
T 2lq6_A           19 TCYLCKQKGVG-ASIQCHKANCYTAFHVTCAQ   49 (87)
T ss_dssp             CBTTTTBCCSS-CEEECSCTTTCCEEEHHHHH
T ss_pred             CCcCCCCCCCc-EeEecCCCCCCCcCcHHHHH
Confidence            58899864  5 899998  499999999854

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=84.48  E-value=0.21  Score=33.32  Aligned_cols=46  Identities=22%  Similarity=0.510  Sum_probs=1.5

Q ss_pred             ccccccccccccCc------------------eEecCCCCCcccccccCCCCCCCCCCCeEeCccccC
Q psy14606         10 EHQDYCEVCQQGGE------------------IILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSD   59 (145)
Q Consensus        10 ~~~~~C~~C~~~g~------------------l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~   59 (145)
                      ..++.|.||.+.=+                  .+.=..|...||..|+...+..    .-.||.|+..
T Consensus        46 ~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~----~~~CP~Cr~~  109 (117)
T 4a0k_B           46 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT----RQVCPLDNRE  109 (117)
T ss_dssp             CCC-----------------------------------------------------------------
T ss_pred             CCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc----CCcCCCCCCe
Confidence            34678999986411                  1112269999999999976554    3468888754

>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}

Probab=84.35  E-value=0.37  Score=30.35  Aligned_cols=29  Identities=34%  Similarity=0.857  Sum_probs=24.0

Q ss_pred             cccccccccc--CceEecC--CCCCcccccccC
Q psy14606         12 QDYCEVCQQG--GEIILCD--TCPRAYHLCCLD   40 (145)
Q Consensus        12 ~~~C~~C~~~--g~l~~Cd--~C~~~~H~~Cl~   40 (145)
                      ...|.+|++.  |-.|-|.  .|.++||..|..
T Consensus        17 ~l~C~iC~~~~~GAciqC~~~~C~~~fHv~CA~   49 (87)
T 2lq6_A           17 KLTCYLCKQKGVGASIQCHKANCYTAFHVTCAQ   49 (87)
T ss_dssp             CCCBTTTTBCCSSCEEECSCTTTCCEEEHHHHH
T ss_pred             cCCCcCCCCCCCcEeEecCCCCCCCcCcHHHHH
Confidence            4579999863  7788887  499999999986

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=83.25  E-value=0.58  Score=27.51  Aligned_cols=48  Identities=19%  Similarity=0.510  Sum_probs=31.8

Q ss_pred             ccccccccccccC-ceEecCCCCCcccccccCCCCCCCCCCCeEeCccccC
Q psy14606         10 EHQDYCEVCQQGG-EIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSD   59 (145)
Q Consensus        10 ~~~~~C~~C~~~g-~l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~   59 (145)
                      ..+..|.||.+.- +-+.- .|+..||..|+...+.. ..+...||.|+..
T Consensus        18 ~~~~~C~IC~~~~~~~~~~-~CgH~fC~~Ci~~~~~~-~~~~~~CP~Cr~~   66 (73)
T 2ysl_A           18 QEEVICPICLDILQKPVTI-DCGHNFCLKCITQIGET-SCGFFKCPLCKTS   66 (73)
T ss_dssp             CCCCBCTTTCSBCSSEEEC-TTCCEEEHHHHHHHCSS-SCSCCCCSSSCCC
T ss_pred             ccCCEeccCCcccCCeEEc-CCCChhhHHHHHHHHHc-CCCCCCCCCCCCc
Confidence            4556899999853 22222 79999999999854432 2345678888754

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=82.86  E-value=0.24  Score=32.29  Aligned_cols=45  Identities=22%  Similarity=0.541  Sum_probs=30.7

Q ss_pred             cccccccccccCc------------------eEecCCCCCcccccccCCCCCCCCCCCeEeCccccC
Q psy14606         11 HQDYCEVCQQGGE------------------IILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSD   59 (145)
Q Consensus        11 ~~~~C~~C~~~g~------------------l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~   59 (145)
                      .++.|.||.+.-+                  .+.=-.|...||..|+...+..    .-.||.|+..
T Consensus        36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~----~~~CP~Cr~~   98 (106)
T 3dpl_R           36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT----RQVCPLDNRE   98 (106)
T ss_dssp             CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT----CSBCSSSCSB
T ss_pred             CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc----CCcCcCCCCc
Confidence            5678999876311                  1233469999999999976553    3568888754

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=82.07  E-value=0.22  Score=28.96  Aligned_cols=46  Identities=26%  Similarity=0.709  Sum_probs=31.2

Q ss_pred             ccccccccccccc-------CceEecCCCCCcccccccCCCCCCCCCCCeEeCcccc
Q psy14606          9 TEHQDYCEVCQQG-------GEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVS   58 (145)
Q Consensus         9 ~~~~~~C~~C~~~-------g~l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~   58 (145)
                      ...+..|.||.+.       ++.+.-..|+..||..|+...+..    .-.||.|+.
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~   64 (69)
T 2ea6_A           12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----ANTCPTCRK   64 (69)
T ss_dssp             TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH----CSSCTTTCC
T ss_pred             CCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc----CCCCCCCCC
Confidence            3556689999873       234455679999999999854432    235777764

>1weq_A PHD finger protein 7; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2

Probab=81.43  E-value=1.2  Score=28.05  Aligned_cols=33  Identities=36%  Similarity=0.888  Sum_probs=26.9

Q ss_pred             ceEecCCCCC-cccccccCCCCCCCCCCCeEeCcccc
Q psy14606         23 EIILCDTCPR-AYHLCCLDPELDETPEGKWSCPRCVS   58 (145)
Q Consensus        23 ~l~~Cd~C~~-~~H~~Cl~p~~~~~p~~~W~C~~C~~   58 (145)
                      +||+|..|+. +-|..|..  +. .....|.|..|..
T Consensus        45 ~L~lC~~Cgs~gtH~~Cs~--l~-~~~~~weC~~C~~   78 (85)
T 1weq_A           45 RLILCATCGSHGTHRDCSS--LR-PNSKKWECNECLP   78 (85)
T ss_dssp             BCEECSSSCCCEECSGGGT--CC-TTCSCCCCTTTSC
T ss_pred             EEEeCcccCCchhHHHHhC--Cc-CCCCCEECCcCcc
Confidence            5999999998 89999998  32 2456799999974

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=81.11  E-value=0.35  Score=28.11  Aligned_cols=46  Identities=20%  Similarity=0.405  Sum_probs=30.3

Q ss_pred             ccccccccccccC-ceEecCCCCCcccccccCCCCCCCCCCCeEeCccccC
Q psy14606         10 EHQDYCEVCQQGG-EIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSD   59 (145)
Q Consensus        10 ~~~~~C~~C~~~g-~l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~   59 (145)
                      ..+..|.||.+.- +-+. ..|+..||..|+...+.   .+...||.|+..
T Consensus        13 ~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~---~~~~~CP~Cr~~   59 (66)
T 2ecy_A           13 EDKYKCEKCHLVLCSPKQ-TECGHRFCESCMAALLS---SSSPKCTACQES   59 (66)
T ss_dssp             CCCEECTTTCCEESSCCC-CSSSCCCCHHHHHHHHT---TSSCCCTTTCCC
T ss_pred             CcCCCCCCCChHhcCeeE-CCCCCHHHHHHHHHHHH---hCcCCCCCCCcC
Confidence            4456799998742 2111 47999999999986543   234568888744

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	145
d1mm2a_	61	g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens	7e-13
d1mm2a_	61	g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens	1e-05
d1fp0a1	70	g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-	1e-12
d1fp0a1	70	g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-	6e-04
d1f62a_	51	g.50.1.2 (A:) Williams-Beuren syndrome transcripti	4e-08
d1f62a_	51	g.50.1.2 (A:) Williams-Beuren syndrome transcripti	0.001
d1weea_	72	g.50.1.2 (A:) PHD finger protein At1g33420 {Thale	2e-07
d1weea_	72	g.50.1.2 (A:) PHD finger protein At1g33420 {Thale	0.003
d1weva_	88	g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus mu	2e-07
d1we9a_	64	g.50.1.2 (A:) PHD finger protein At5g26210 {Thale	1e-06
d1we9a_	64	g.50.1.2 (A:) PHD finger protein At5g26210 {Thale	0.002
d1wema_	76	g.50.1.2 (A:) Death associated transcription facto	2e-05

>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Length = 61

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Mi2-beta (CHD4)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.7 bits (139), Expect = 7e-13
 Identities = 26/49 (53%), Positives = 35/49 (71%)

Query: 10 EHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVS 58
           H ++C VC+ GGE++ CDTCP +YH+ CL+P L E P G+W CPRC  
Sbjct: 7  HHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTC 55

>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Length = 61

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Mi2-beta (CHD4)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (90), Expect = 1e-05
 Identities = 26/57 (45%), Positives = 32/57 (56%), Gaps = 2/57 (3%)

Query: 74  EKEVLCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCSCPPLPGK 130
                C  CK  G+  L C+TC  SYH HCL  P+  E+P   W CP+C+CP L GK
Sbjct: 7   HHMEFCRVCKDGGE-LLCCDTCPSSYHIHCLNPPLP-EIPNGEWLCPRCTCPALKGK 61

>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Length = 70

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Nuclear corepressor KAP-1 (TIF-1beta)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.3 bits (138), Expect = 1e-12
 Identities = 18/64 (28%), Positives = 30/64 (46%)

Query: 10 EHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPETASPPA 69
          +    C VCQ+ G++++C+ C   +HL C  P L + P  +WSC  C      +      
Sbjct: 5  DSATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPDLKEEDVDL 64

Query: 70 EEVK 73
          +  K
Sbjct: 65 QACK 68

>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Length = 70

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Nuclear corepressor KAP-1 (TIF-1beta)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.2 bits (78), Expect = 6e-04
 Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 2/63 (3%)

Query: 71  EVKEKEVLCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCSCPPLPGK 130
            + +   +C  C+ PGD  ++C  C   +H  C    ++ ++P   W C  C   P   +
Sbjct: 2   TLDDSATICRVCQKPGD-LVMCNQCEFCFHLDCHLPALQ-DVPGEEWSCSLCHVLPDLKE 59

Query: 131 LED 133
            + 
Sbjct: 60  EDV 62

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Length = 51

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Williams-Beuren syndrome transcription factor, WSTF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (106), Expect = 4e-08
 Identities = 24/45 (53%), Positives = 32/45 (71%), Gaps = 3/45 (6%)

Query: 15 CEVCQQGGE---IILCDTCPRAYHLCCLDPELDETPEGKWSCPRC 56
          C+VC++ GE   +ILCD C +A+HL CL P L E P+G+W CP C
Sbjct: 3  CKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPAC 47

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Length = 51

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Williams-Beuren syndrome transcription factor, WSTF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.4 bits (76), Expect = 0.001
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 3/46 (6%)

Query: 79  CAKCKSPGD--QFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKC 122
           C  C+  G+  + +LC+ CN ++H  CL   +  E+P   W+CP C
Sbjct: 3   CKVCRKKGEDDKLILCDECNKAFHLFCLRPALY-EVPDGEWQCPAC 47

>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 72

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At1g33420
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 43.9 bits (103), Expect = 2e-07
 Identities = 11/45 (24%), Positives = 19/45 (42%)

Query: 21 GGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPETA 65
          G  ++ CD C   +H  C+     +    K+ C RC+    P + 
Sbjct: 28 GERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELSGPSSG 72

>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 72

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At1g33420
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 32.7 bits (74), Expect = 0.003
 Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 1/45 (2%)

Query: 78  LCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKC 122
            C      G++ L C+ C   +H  C+      +   S + C +C
Sbjct: 20  KCGTKDDDGERMLACDGCGVWHHTRCI-GINNADALPSKFLCFRC 63

>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Length = 88

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 22
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.1 bits (103), Expect = 2e-07
 Identities = 17/65 (26%), Positives = 24/65 (36%), Gaps = 9/65 (13%)

Query: 2  SHIQDLQTEHQDYCEVCQQG-----GEIILCDTCPRAYHLCCLDPELDETP----EGKWS 52
          S   D   E    C VC+Q       +++ C  C   YH  C  P++ +         W 
Sbjct: 6  SGADDFAMEMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWY 65

Query: 53 CPRCV 57
          C RC 
Sbjct: 66 CARCT 70

>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At5g26210
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 41.6 bits (97), Expect = 1e-06
 Identities = 12/59 (20%), Positives = 19/59 (32%), Gaps = 5/59 (8%)

Query: 12 QDYCEVCQQ----GGEIILCDTCPRAYHLCCLDPELDETPE-GKWSCPRCVSDGPPETA 65
             C  C +        I CD C   +H  C+           ++ CP C +   P + 
Sbjct: 6  SGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKSGPSSG 64

>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At5g26210
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 33.1 bits (75), Expect = 0.002
 Identities = 10/46 (21%), Positives = 19/46 (41%)

Query: 79  CAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCSC 124
           C +  +  + ++ C+ C   +H  C+            +KCP CS 
Sbjct: 12  CGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57

>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 76

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Death associated transcription factor 1, Datf1 (DIO-1)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.5 bits (89), Expect = 2e-05
 Identities = 13/57 (22%), Positives = 18/57 (31%), Gaps = 5/57 (8%)

Query: 14 YCEVCQQGGEIILCDTCPRAYHLCCL-----DPELDETPEGKWSCPRCVSDGPPETA 65
           C        +I CD C   +H  C+        L E     + CP C     P + 
Sbjct: 20 ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSGPSSG 76

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	145
d1mm2a_	61	Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606	99.56
d1mm2a_	61	Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606	99.53
d1fp0a1	70	Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo	99.52
d1fp0a1	70	Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo	99.42
d1f62a_	51	Williams-Beuren syndrome transcription factor, WST	99.34
d1f62a_	51	Williams-Beuren syndrome transcription factor, WST	99.33
d1weva_	88	PHD finger protein 22 {Mouse (Mus musculus) [TaxId	99.02
d1weva_	88	PHD finger protein 22 {Mouse (Mus musculus) [TaxId	98.83
d1weea_	72	PHD finger protein At1g33420 {Thale cress (Arabido	98.83
d1we9a_	64	PHD finger protein At5g26210 {Thale cress (Arabido	98.77
d1wesa_	71	PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu	98.69
d2pnxa1	51	Inhibitor of growth protein 4, Ing4 {Homo sapiens	98.66
d1wesa_	71	PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu	98.64
d1wepa_	79	PHD finger protein 8 {Mouse (Mus musculus) [TaxId:	98.55
d2pnxa1	51	Inhibitor of growth protein 4, Ing4 {Homo sapiens	98.53
d1weea_	72	PHD finger protein At1g33420 {Thale cress (Arabido	98.52
d1we9a_	64	PHD finger protein At5g26210 {Thale cress (Arabido	98.52
d1wema_	76	Death associated transcription factor 1, Datf1 (DI	98.33
d1wepa_	79	PHD finger protein 8 {Mouse (Mus musculus) [TaxId:	98.04
d1wema_	76	Death associated transcription factor 1, Datf1 (DI	98.0
d1wewa_	78	Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop	97.9
d1wewa_	78	Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop	97.89
d1wila_	89	Hypothetical protein KIAA1045 {Human (Homo sapiens	97.12
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	95.4
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	94.42
d1wila_	89	Hypothetical protein KIAA1045 {Human (Homo sapiens	94.08
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	92.82
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	91.49
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	88.05
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	83.96

>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Mi2-beta (CHD4)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.9e-15  Score=90.38  Aligned_cols=57  Identities=46%  Similarity=1.161  Sum_probs=49.9

Q ss_pred             cccccccccccCCCCCCeecCCCCCCCCCCCCCCCCCCCCCCCCceeCCCCCCCCCCCc
Q psy14606         72 VKEKEVLCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCSCPPLPGK  130 (145)
Q Consensus        72 ~~~~~~~C~vC~~~g~~ll~C~~C~~~yH~~Cl~~~~~~~~p~~~w~C~~C~~~~~~~~  130 (145)
                      .+.+..+|.+|+++| .||.|+.|+++||..|+++++. .+|++.|+|+.|+.+.+++|
T Consensus         5 ~d~~~~~C~~C~~~g-~lv~Cd~C~~~~H~~C~~~~~~-~~~~~~W~C~~C~~~~~kgk   61 (61)
T d1mm2a_           5 SDHHMEFCRVCKDGG-ELLCCDTCPSSYHIHCLNPPLP-EIPNGEWLCPRCTCPALKGK   61 (61)
T ss_dssp             SCSSCSSCTTTCCCS-SCBCCSSSCCCBCSSSSSSCCS-SCCSSCCCCTTTTTTCCTTC
T ss_pred             ccCCcCCCcCCCCCC-eEEEeCCCCccCchhhcCCCcC-cCCCCcEECCCCcCcccCCC
Confidence            344556899999988 8999999999999999999888 88999999999998877664

>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Mi2-beta (CHD4)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2.4e-15  Score=89.92  Aligned_cols=53  Identities=49%  Similarity=1.333  Sum_probs=48.3

Q ss_pred             ccccccccccccccCceEecCCCCCcccccccCCCCCCCCCCCeEeCccccCC
Q psy14606          8 QTEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDG   60 (145)
Q Consensus         8 ~~~~~~~C~~C~~~g~l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~   60 (145)
                      ++.++++|.+|+++|+||.||+|+++||..|+++++..+|++.|+|+.|+...
T Consensus         5 ~d~~~~~C~~C~~~g~lv~Cd~C~~~~H~~C~~~~~~~~~~~~W~C~~C~~~~   57 (61)
T d1mm2a_           5 SDHHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA   57 (61)
T ss_dssp             SCSSCSSCTTTCCCSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred             ccCCcCCCcCCCCCCeEEEeCCCCccCchhhcCCCcCcCCCCcEECCCCcCcc
Confidence            34677899999999999999999999999999999999999999999998544

>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Nuclear corepressor KAP-1 (TIF-1beta)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=4.9e-15  Score=90.93  Aligned_cols=53  Identities=32%  Similarity=0.875  Sum_probs=47.6

Q ss_pred             cccccccccccccCceEecCCCCCcccccccCCCCCCCCCCCeEeCccccCCC
Q psy14606          9 TEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGP   61 (145)
Q Consensus         9 ~~~~~~C~~C~~~g~l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~~   61 (145)
                      +.+..+|.+|+++|+||.||+|+++||..|++|++..+|.+.|+|+.|+....
T Consensus         4 Dd~c~~C~~C~~~~~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~   56 (70)
T d1fp0a1           4 DDSATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPD   56 (70)
T ss_dssp             SSSSSCCSSSCSSSCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCCS
T ss_pred             CCCCCCCCCCCCcCEEEECCCCChhhccccCCCCcCcCCCCCEECcCCcCcCc
Confidence            34567899999999999999999999999999999999999999999975543

>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Nuclear corepressor KAP-1 (TIF-1beta)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=9e-14  Score=85.14  Aligned_cols=48  Identities=25%  Similarity=0.923  Sum_probs=43.3

Q ss_pred             ccccccccCCCCCCeecCCCCCCCCCCCCCCCCCCCCCCCCceeCCCCCC
Q psy14606         75 KEVLCAKCKSPGDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCSC  124 (145)
Q Consensus        75 ~~~~C~vC~~~g~~ll~C~~C~~~yH~~Cl~~~~~~~~p~~~w~C~~C~~  124 (145)
                      ...+|.+|+++| .||.|+.|+++||..|+.|++. .+|.+.|+|+.|.-
T Consensus         6 ~c~~C~~C~~~~-~ll~Cd~C~~~~H~~C~~p~l~-~~p~~~W~C~~C~~   53 (70)
T d1fp0a1           6 SATICRVCQKPG-DLVMCNQCEFCFHLDCHLPALQ-DVPGEEWSCSLCHV   53 (70)
T ss_dssp             SSSCCSSSCSSS-CCEECTTSSCEECTTSSSTTCC-CCCSSSCCCCSCCC
T ss_pred             CCCCCCCCCCcC-EEEECCCCChhhccccCCCCcC-cCCCCCEECcCCcC
Confidence            344799999888 8999999999999999999998 99999999999953

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Williams-Beuren syndrome transcription factor, WSTF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1.6e-13  Score=78.94  Aligned_cols=45  Identities=49%  Similarity=1.302  Sum_probs=40.1

Q ss_pred             ccccccc---cCceEecCCCCCcccccccCCCCCCCCCCCeEeCcccc
Q psy14606         14 YCEVCQQ---GGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVS   58 (145)
Q Consensus        14 ~C~~C~~---~g~l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~   58 (145)
                      .|.+|+.   +++||.||+|++.||+.|++|++..+|+++|+|+.|+.
T Consensus         2 ~C~vC~~~~~~~~~i~Cd~C~~~~H~~C~~p~~~~~p~~~W~C~~C~~   49 (51)
T d1f62a_           2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP   49 (51)
T ss_dssp             CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred             CCcCcCCCCCCCCEEEcCCCCCCCCCCCCCCCCCcCCCCCEECcCCcC
Confidence            4777765   45799999999999999999999999999999999974

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Williams-Beuren syndrome transcription factor, WSTF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=8.8e-14  Score=80.05  Aligned_cols=45  Identities=38%  Similarity=1.136  Sum_probs=40.2

Q ss_pred             cccccCCCC--CCeecCCCCCCCCCCCCCCCCCCCCCCCCceeCCCCC
Q psy14606         78 LCAKCKSPG--DQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCS  123 (145)
Q Consensus        78 ~C~vC~~~g--~~ll~C~~C~~~yH~~Cl~~~~~~~~p~~~w~C~~C~  123 (145)
                      .|.+|+..+  +.||+|+.|+++||..|++|++. .+|++.|+|+.|.
T Consensus         2 ~C~vC~~~~~~~~~i~Cd~C~~~~H~~C~~p~~~-~~p~~~W~C~~C~   48 (51)
T d1f62a_           2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALY-EVPDGEWQCPACQ   48 (51)
T ss_dssp             CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCC-SCCSSCCSCTTTS
T ss_pred             CCcCcCCCCCCCCEEEcCCCCCCCCCCCCCCCCC-cCCCCCEECcCCc
Confidence            477887755  57999999999999999999999 9999999999995

>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 22
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.02  E-value=2.9e-11  Score=76.68  Aligned_cols=51  Identities=31%  Similarity=0.789  Sum_probs=41.8

Q ss_pred             ccccccccccccc-----CceEecCCCCCcccccccCCCCC----CCCCCCeEeCccccC
Q psy14606          9 TEHQDYCEVCQQG-----GEIILCDTCPRAYHLCCLDPELD----ETPEGKWSCPRCVSD   59 (145)
Q Consensus         9 ~~~~~~C~~C~~~-----g~l~~Cd~C~~~~H~~Cl~p~~~----~~p~~~W~C~~C~~~   59 (145)
                      .....+|.+|++.     +.||.|+.|.++||..|++|++.    .++.+.|+|+.|+..
T Consensus        13 ~~~~~~C~iC~~~~~~~~~~~v~Cd~C~~~~H~~C~~p~~~~~~~~~~~~~W~C~~C~~~   72 (88)
T d1weva_          13 MEMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQ   72 (88)
T ss_dssp             HHHCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHH
T ss_pred             CcCcCCccCCCCccCCCCCeEEEcCCCCCccccccCCCcccccccccCCCeEECcccCch
Confidence            3445579999863     46999999999999999999876    467789999999754

>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 22
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.83  E-value=1.8e-10  Score=72.94  Aligned_cols=48  Identities=25%  Similarity=0.794  Sum_probs=38.9

Q ss_pred             cccccccCCCC----CCeecCCCCCCCCCCCCCCCCCCC---CCCCCceeCCCCC
Q psy14606         76 EVLCAKCKSPG----DQFLLCETCNGSYHPHCLPDPIEG---ELPTSGWKCPKCS  123 (145)
Q Consensus        76 ~~~C~vC~~~g----~~ll~C~~C~~~yH~~Cl~~~~~~---~~p~~~w~C~~C~  123 (145)
                      ...|.+|+...    ..||.|+.|.+|||..|++|++..   .++.+.|+|+.|.
T Consensus        16 ~~~C~iC~~~~~~~~~~~v~Cd~C~~~~H~~C~~p~~~~~~~~~~~~~W~C~~C~   70 (88)
T d1weva_          16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCT   70 (88)
T ss_dssp             CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHH
T ss_pred             cCCccCCCCccCCCCCeEEEcCCCCCccccccCCCcccccccccCCCeEECcccC
Confidence            34699998743    368999999999999999998542   3567799999995

>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At1g33420
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.83  E-value=3.9e-10  Score=68.78  Aligned_cols=46  Identities=28%  Similarity=0.666  Sum_probs=37.1

Q ss_pred             cccccccCCC---CCCeecCCCCCCCCCCCCCCCCCCCCCCCCceeCCCCC
Q psy14606         76 EVLCAKCKSP---GDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCS  123 (145)
Q Consensus        76 ~~~C~vC~~~---g~~ll~C~~C~~~yH~~Cl~~~~~~~~p~~~w~C~~C~  123 (145)
                      ...| +|+..   ++.||+|+.|++|||..|++++.. ..+++.|+|+.|.
T Consensus        16 ~~~C-~C~~~~~~~~~mv~Cd~C~~w~H~~C~g~~~~-~~~~~~~~C~~C~   64 (72)
T d1weea_          16 KVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNA-DALPSKFLCFRCI   64 (72)
T ss_dssp             EECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTT-SCCCSCCCCHHHH
T ss_pred             eEEe-eCCCCcCCCCeEEEeCCCCCcCchhhcCCccc-cCCCCcEECcCCc
Confidence            3456 46653   346999999999999999998877 7777899999995

>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At5g26210
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.77  E-value=6.3e-10  Score=66.30  Aligned_cols=48  Identities=23%  Similarity=0.616  Sum_probs=38.0

Q ss_pred             ccccccCCCC---CCeecCCCCCCCCCCCCCCCCCCCCCC-CCceeCCCCCCC
Q psy14606         77 VLCAKCKSPG---DQFLLCETCNGSYHPHCLPDPIEGELP-TSGWKCPKCSCP  125 (145)
Q Consensus        77 ~~C~vC~~~g---~~ll~C~~C~~~yH~~Cl~~~~~~~~p-~~~w~C~~C~~~  125 (145)
                      ..|.+|++..   +.||+|+.|.+|||..|++++.. ..+ ...|+|+.|+-.
T Consensus         7 ~~C~~C~~~~~~~~~~I~Cd~C~~w~H~~C~~~~~~-~~~~~~~w~C~~C~~~   58 (64)
T d1we9a_           7 GQCGACGESYAADEFWICCDLCEMWFHGKCVKITPA-RAEHIKQYKCPSCSNK   58 (64)
T ss_dssp             CCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTT-GGGGCSSCCCHHHHTT
T ss_pred             CcCcCcCCCCCCCCCEEEcCCCCccCCcccCCcChH-HCCCCCeEECcCCcCc
Confidence            4688898743   46899999999999999998766 443 468999999633

>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD Inhibitor of growth protein 2, Ing2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.69  E-value=1.2e-08  Score=61.82  Aligned_cols=48  Identities=46%  Similarity=1.204  Sum_probs=36.9

Q ss_pred             ccccccccccc--cCceEecC--CCC-CcccccccCCCCCCCCCCCeEeCccccCC
Q psy14606         10 EHQDYCEVCQQ--GGEIILCD--TCP-RAYHLCCLDPELDETPEGKWSCPRCVSDG   60 (145)
Q Consensus        10 ~~~~~C~~C~~--~g~l~~Cd--~C~-~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~   60 (145)
                      .+..+| ||++  .+++|.|+  .|. ..||+.|++  +..+|.++|+|+.|+...
T Consensus        14 ~e~~~C-iC~~~~~~~~i~c~~~~C~~~wfH~~Cvg--l~~~p~~~w~C~~C~~~~   66 (71)
T d1wesa_          14 NEPTYC-LCNQVSYGEMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRGDS   66 (71)
T ss_dssp             SSCCCS-TTCCCCCSSEECCSCTTCSCCCEETTTTT--CSSCCSSCCCCTTTSSCC
T ss_pred             CCCCEE-EeCCCCCCCEEEEECCCCCCcCccCccCC--CCcCCCCcEECcCCcccc
Confidence            344567 8986  35677765  676 579999997  888999999999997543

>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Inhibitor of growth protein 4, Ing4
species: Homo sapiens [TaxId: 9606]

Probab=98.66  E-value=4e-09  Score=60.02  Aligned_cols=43  Identities=49%  Similarity=1.253  Sum_probs=35.2

Q ss_pred             cccccccc--cCceEecCC--C-CCcccccccCCCCCCCCCCCeEeCcccc
Q psy14606         13 DYCEVCQQ--GGEIILCDT--C-PRAYHLCCLDPELDETPEGKWSCPRCVS   58 (145)
Q Consensus        13 ~~C~~C~~--~g~l~~Cd~--C-~~~~H~~Cl~p~~~~~p~~~W~C~~C~~   58 (145)
                      .+| +|++  .++||.|+.  | ...||..|++  ++..|.+.|+|+.|+.
T Consensus         3 ~yC-~C~~~~~~~mi~Cd~~~C~~~WfH~~Cvg--l~~~p~~~w~C~~C~~   50 (51)
T d2pnxa1           3 TYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ   50 (51)
T ss_dssp             EET-TTTEECCSEEEECSCTTCSSCEEEGGGGT--CSSCCSSCCCCHHHHC
T ss_pred             cEE-EcCCCCCCCEEEEecCCCCCCCEeCCccC--CCcCCCCcEECcCCCC
Confidence            367 6876  467999996  4 5689999998  7788899999999974

>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD Inhibitor of growth protein 2, Ing2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.64  E-value=1.7e-08  Score=61.23  Aligned_cols=44  Identities=30%  Similarity=0.858  Sum_probs=33.8

Q ss_pred             ccccccCCCC-CCeecC--CCCC-CCCCCCCCCCCCCCCCCCCceeCCCCCC
Q psy14606         77 VLCAKCKSPG-DQFLLC--ETCN-GSYHPHCLPDPIEGELPTSGWKCPKCSC  124 (145)
Q Consensus        77 ~~C~vC~~~g-~~ll~C--~~C~-~~yH~~Cl~~~~~~~~p~~~w~C~~C~~  124 (145)
                      .+| +|+... ..+|.|  +.|. .|||..||+  ++ ++|.++|+|+.|..
T Consensus        17 ~~C-iC~~~~~~~~i~c~~~~C~~~wfH~~Cvg--l~-~~p~~~w~C~~C~~   64 (71)
T d1wesa_          17 TYC-LCNQVSYGEMIGCDNEQCPIEWFHFSCVS--LT-YKPKGKWYCPKCRG   64 (71)
T ss_dssp             CCS-TTCCCCCSSEECCSCTTCSCCCEETTTTT--CS-SCCSSCCCCTTTSS
T ss_pred             CEE-EeCCCCCCCEEEEECCCCCCcCccCccCC--CC-cCCCCcEECcCCcc
Confidence            477 688754 356666  4675 699999997  66 88999999999963

>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.55  E-value=3e-09  Score=65.91  Aligned_cols=47  Identities=26%  Similarity=0.677  Sum_probs=36.4

Q ss_pred             cccccccCCCC---CCeecCCCCCCCCCCCCCCCCCCCCCC-CCceeCCCCCC
Q psy14606         76 EVLCAKCKSPG---DQFLLCETCNGSYHPHCLPDPIEGELP-TSGWKCPKCSC  124 (145)
Q Consensus        76 ~~~C~vC~~~g---~~ll~C~~C~~~yH~~Cl~~~~~~~~p-~~~w~C~~C~~  124 (145)
                      ..+| +|+...   +.||+|+.|+.|||..|++.... ..+ .+.|+|+.|..
T Consensus        12 pv~C-iC~~~~~~~~~mI~Cd~C~~W~H~~C~g~~~~-~~~~~~~~~C~~C~~   62 (79)
T d1wepa_          12 PVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEE-NAVDIDIYHCPDCEA   62 (79)
T ss_dssp             CCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHH-HHTTCSBBCCTTTTT
T ss_pred             CeEe-ECCCccCCCCcEEECCCCCCcEeccccCcchh-cCCCCCEEECccCcC
Confidence            4567 798743   45999999999999999997644 333 35799999974

>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Inhibitor of growth protein 4, Ing4
species: Homo sapiens [TaxId: 9606]

Probab=98.53  E-value=1.7e-09  Score=61.60  Aligned_cols=42  Identities=26%  Similarity=0.808  Sum_probs=33.6

Q ss_pred             cccccCCCC-CCeecCCC---CCCCCCCCCCCCCCCCCCCCCceeCCCCC
Q psy14606         78 LCAKCKSPG-DQFLLCET---CNGSYHPHCLPDPIEGELPTSGWKCPKCS  123 (145)
Q Consensus        78 ~C~vC~~~g-~~ll~C~~---C~~~yH~~Cl~~~~~~~~p~~~w~C~~C~  123 (145)
                      +| +|+.+. ++||.|+.   |..|||..|++  ++ +.|.+.|+|+.|+
T Consensus         4 yC-~C~~~~~~~mi~Cd~~~C~~~WfH~~Cvg--l~-~~p~~~w~C~~C~   49 (51)
T d2pnxa1           4 YC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG--LT-TKPRGKWFCPRCS   49 (51)
T ss_dssp             ET-TTTEECCSEEEECSCTTCSSCEEEGGGGT--CS-SCCSSCCCCHHHH
T ss_pred             EE-EcCCCCCCCEEEEecCCCCCCCEeCCccC--CC-cCCCCcEECcCCC
Confidence            67 587643 46999986   46899999998  45 7788999999985

>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At1g33420
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.52  E-value=2.2e-08  Score=60.67  Aligned_cols=45  Identities=27%  Similarity=0.665  Sum_probs=37.4

Q ss_pred             cccccc---cC-ceEecCCCCCcccccccCCCCCCCCCCCeEeCccccCC
Q psy14606         15 CEVCQQ---GG-EIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDG   60 (145)
Q Consensus        15 C~~C~~---~g-~l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~~   60 (145)
                      | +|+.   .+ .||.|+.|.+.||..|++++....+.+.|+|+.|+...
T Consensus        19 C-~C~~~~~~~~~mv~Cd~C~~w~H~~C~g~~~~~~~~~~~~C~~C~~~~   67 (72)
T d1weea_          19 C-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELS   67 (72)
T ss_dssp             C-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHC
T ss_pred             e-eCCCCcCCCCeEEEeCCCCCcCchhhcCCccccCCCCcEECcCCcCcC
Confidence            5 5664   23 48999999999999999988777888899999998654

>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At5g26210
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.52  E-value=1.7e-08  Score=59.87  Aligned_cols=51  Identities=22%  Similarity=0.547  Sum_probs=40.1

Q ss_pred             cccccccccccc----CceEecCCCCCcccccccCCCCCCCC-CCCeEeCccccCC
Q psy14606         10 EHQDYCEVCQQG----GEIILCDTCPRAYHLCCLDPELDETP-EGKWSCPRCVSDG   60 (145)
Q Consensus        10 ~~~~~C~~C~~~----g~l~~Cd~C~~~~H~~Cl~p~~~~~p-~~~W~C~~C~~~~   60 (145)
                      .....|.+|++.    ..+|.|+.|.+.||..|++++....+ ..+|+|+.|+...
T Consensus         4 ~~~~~C~~C~~~~~~~~~~I~Cd~C~~w~H~~C~~~~~~~~~~~~~w~C~~C~~~~   59 (64)
T d1we9a_           4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKS   59 (64)
T ss_dssp             SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTT
T ss_pred             CCCCcCcCcCCCCCCCCCEEEcCCCCccCCcccCCcChHHCCCCCeEECcCCcCcC
Confidence            345689999863    35799999999999999997766554 3689999998543

>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Death associated transcription factor 1, Datf1 (DIO-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.33  E-value=4.5e-09  Score=64.41  Aligned_cols=49  Identities=22%  Similarity=0.704  Sum_probs=35.4

Q ss_pred             cccccccccCCCC--CCeecCCCCCCCCCCCCCCCCCCC----CCCCCceeCCCCC
Q psy14606         74 EKEVLCAKCKSPG--DQFLLCETCNGSYHPHCLPDPIEG----ELPTSGWKCPKCS  123 (145)
Q Consensus        74 ~~~~~C~vC~~~g--~~ll~C~~C~~~yH~~Cl~~~~~~----~~p~~~w~C~~C~  123 (145)
                      ....+| +|+..+  +.||+|+.|.+|||..|++.+...    ..+...|+|+.|.
T Consensus        14 ~~~~~C-iC~~~~~~~~mi~Cd~C~~w~H~~Cvg~~~~~~~~~~~~~~~w~C~~C~   68 (76)
T d1wema_          14 PNALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCT   68 (76)
T ss_dssp             TTCCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHH
T ss_pred             CCcCEE-ECCCccCCCeEEEECCCCCcCCccccCCCcccccccCCCCCcEECCCCc
Confidence            344568 687754  469999999999999999754210    2334679999994

>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.04  E-value=5.7e-07  Score=55.26  Aligned_cols=46  Identities=28%  Similarity=0.711  Sum_probs=35.7

Q ss_pred             cccccccc----CceEecCCCCCcccccccCCCCCCCCC-CCeEeCccccCC
Q psy14606         14 YCEVCQQG----GEIILCDTCPRAYHLCCLDPELDETPE-GKWSCPRCVSDG   60 (145)
Q Consensus        14 ~C~~C~~~----g~l~~Cd~C~~~~H~~Cl~p~~~~~p~-~~W~C~~C~~~~   60 (145)
                      +| +|++.    +.+|.||.|.+.||..|++.....++. +.|+|+.|+...
T Consensus        14 ~C-iC~~~~~~~~~mI~Cd~C~~W~H~~C~g~~~~~~~~~~~~~C~~C~~~~   64 (79)
T d1wepa_          14 YC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF   64 (79)
T ss_dssp             CS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred             Ee-ECCCccCCCCcEEECCCCCCcEeccccCcchhcCCCCCEEECccCcCCc
Confidence            45 89863    348999999999999999965544443 579999998543

>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Death associated transcription factor 1, Datf1 (DIO-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.00  E-value=1.2e-07  Score=57.84  Aligned_cols=49  Identities=29%  Similarity=0.674  Sum_probs=35.7

Q ss_pred             ccccccccccc---cCceEecCCCCCcccccccCCCCC-----CCCCCCeEeCccccC
Q psy14606         10 EHQDYCEVCQQ---GGEIILCDTCPRAYHLCCLDPELD-----ETPEGKWSCPRCVSD   59 (145)
Q Consensus        10 ~~~~~C~~C~~---~g~l~~Cd~C~~~~H~~Cl~p~~~-----~~p~~~W~C~~C~~~   59 (145)
                      .+..+| +|++   ++.||.|+.|.+.||..|++.+..     ..+...|+|+.|...
T Consensus        14 ~~~~~C-iC~~~~~~~~mi~Cd~C~~w~H~~Cvg~~~~~~~~~~~~~~~w~C~~C~~~   70 (76)
T d1wema_          14 PNALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL   70 (76)
T ss_dssp             TTCCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred             CCcCEE-ECCCccCCCeEEEECCCCCcCCccccCCCcccccccCCCCCcEECCCCcCc
Confidence            344467 7876   456999999999999999974321     233467999999643

>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Sumoylation ligase E3, SIZ1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.90  E-value=4.2e-07  Score=55.74  Aligned_cols=47  Identities=28%  Similarity=0.603  Sum_probs=32.6

Q ss_pred             cccccccCCCC--CCeecCC--CCCCCCCCCCCCCCCC---C-CCCCCceeCCCCC
Q psy14606         76 EVLCAKCKSPG--DQFLLCE--TCNGSYHPHCLPDPIE---G-ELPTSGWKCPKCS  123 (145)
Q Consensus        76 ~~~C~vC~~~g--~~ll~C~--~C~~~yH~~Cl~~~~~---~-~~p~~~w~C~~C~  123 (145)
                      ..+| +|+...  +.||+|+  .|..|||..|++.+..   . ......|+|+.|+
T Consensus        16 ~~~C-~C~~~~~~~~~i~c~c~~C~~W~H~~Cvgi~~~~~~~~~~~~~~~~C~~C~   70 (78)
T d1wewa_          16 KVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICR   70 (78)
T ss_dssp             CCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHH
T ss_pred             ccEe-ECCCccCCCcEEEEeCCCCCcCCCccccCccccccccccCCCCEEECCCCc
Confidence            4578 688753  3677886  8999999999875321   0 1122479999995

>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Sumoylation ligase E3, SIZ1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.89  E-value=2.9e-06  Score=51.82  Aligned_cols=50  Identities=22%  Similarity=0.462  Sum_probs=34.7

Q ss_pred             ccccccccccc---cCceEecC--CCCCcccccccCCCCCC---C--CCCCeEeCccccCC
Q psy14606         10 EHQDYCEVCQQ---GGEIILCD--TCPRAYHLCCLDPELDE---T--PEGKWSCPRCVSDG   60 (145)
Q Consensus        10 ~~~~~C~~C~~---~g~l~~Cd--~C~~~~H~~Cl~p~~~~---~--p~~~W~C~~C~~~~   60 (145)
                      .....| +|+.   .+.+|.|+  .|..-||..|++.....   .  ....|+|+.|....
T Consensus        14 ~~~~~C-~C~~~~~~~~~i~c~c~~C~~W~H~~Cvgi~~~~~~~~~~~~~~~~C~~C~~~~   73 (78)
T d1wewa_          14 EIKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS   73 (78)
T ss_dssp             CCCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred             CCccEe-ECCCccCCCcEEEEeCCCCCcCCCccccCccccccccccCCCCEEECCCCcCcC
Confidence            334467 8987   35788887  79999999999843221   1  12369999997543

>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: variant PHD-like domain
domain: Hypothetical protein KIAA1045
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.12  E-value=0.00012  Score=44.49  Aligned_cols=60  Identities=27%  Similarity=0.570  Sum_probs=43.8

Q ss_pred             CCccccccccccccccccc--cCceEecCCCCCcccccccCCCC--C-----C-----CCCCCeEeCccccCCC
Q psy14606          2 SHIQDLQTEHQDYCEVCQQ--GGEIILCDTCPRAYHLCCLDPEL--D-----E-----TPEGKWSCPRCVSDGP   61 (145)
Q Consensus         2 ~~~~~~~~~~~~~C~~C~~--~g~l~~Cd~C~~~~H~~Cl~p~~--~-----~-----~p~~~W~C~~C~~~~~   61 (145)
                      +.+.+....+|..|.||.-  +.+++-|-.|.|.||..||.-..  .     .     ...-.|.|..|.+.+.
T Consensus         5 ~~~~re~v~~D~mC~vC~v~t~~~l~pCRvCtRv~H~~CL~r~gyl~~e~a~e~~e~A~T~~GWSC~~C~nl~~   78 (89)
T d1wila_           5 SSGPREPVVNDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDNINL   78 (89)
T ss_dssp             CCCSCCCCCCSCCCTTTCCCCSSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCCCCS
T ss_pred             ccCcccCCCcCccccccCcccccceecceeecchhhHHHHHHhcccccHHHHHHHHhhcCCCCcchhhhcchhh
Confidence            4455566789999999964  45788999999999999997321  0     0     1124899999986543

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=95.40  E-value=0.0044  Score=34.50  Aligned_cols=43  Identities=28%  Similarity=0.559  Sum_probs=31.4

Q ss_pred             cccccccccc----CceEecCCCCCcccccccCCCCCCCCCCCeEeCcccc
Q psy14606         12 QDYCEVCQQG----GEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVS   58 (145)
Q Consensus        12 ~~~C~~C~~~----g~l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~   58 (145)
                      +..|.||.+.    ...+....|+..||..|+...+...    -.||.|+.
T Consensus         5 ~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~~----~~CP~CR~   51 (55)
T d1iyma_           5 GVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSH----STCPLCRL   51 (55)
T ss_dssp             SCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTC----CSCSSSCC
T ss_pred             CCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHhC----CcCCCCCC
Confidence            4469999863    3455677899999999999766542    24888874

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=94.42  E-value=0.001  Score=37.81  Aligned_cols=48  Identities=23%  Similarity=0.345  Sum_probs=32.9

Q ss_pred             ccccccccccccC--c-eE--ecCCCCCcccccccCCCCCCCCCCCeEeCccccC
Q psy14606         10 EHQDYCEVCQQGG--E-II--LCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSD   59 (145)
Q Consensus        10 ~~~~~C~~C~~~g--~-l~--~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~   59 (145)
                      ....+|.||.++.  . +.  .|.+|...||..||...+..  +++..||.|+..
T Consensus         4 ed~~~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~W~~~--~~~~~CP~Cr~~   56 (60)
T d1vyxa_           4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTI--SRNTACQICGVV   56 (60)
T ss_dssp             CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHH--HTCSBCTTTCCB
T ss_pred             CCCCCCccCCccCCCceeEecccCCCCCEEcHHHHHHHHhh--CCCCCCcccCCe
Confidence            4556899998743  2 22  45678899999999865432  244678888754

>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: variant PHD-like domain
domain: Hypothetical protein KIAA1045
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.08  E-value=0.004  Score=37.57  Aligned_cols=50  Identities=22%  Similarity=0.713  Sum_probs=35.6

Q ss_pred             cccccccccCCC-CCCeecCCCCCCCCCCCCCCCC----------CC-CCCCCCceeCCCCC
Q psy14606         74 EKEVLCAKCKSP-GDQFLLCETCNGSYHPHCLPDP----------IE-GELPTSGWKCPKCS  123 (145)
Q Consensus        74 ~~~~~C~vC~~~-g~~ll~C~~C~~~yH~~Cl~~~----------~~-~~~p~~~w~C~~C~  123 (145)
                      .+...|.+|.-. ++.++.|.-|.+.||..||...          +. ....+..|-|..|.
T Consensus        13 ~~D~mC~vC~v~t~~~l~pCRvCtRv~H~~CL~r~gyl~~e~a~e~~e~A~T~~GWSC~~C~   74 (89)
T d1wila_          13 VNDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCD   74 (89)
T ss_dssp             CCSCCCTTTCCCCSSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTC
T ss_pred             CcCccccccCcccccceecceeecchhhHHHHHHhcccccHHHHHHHHhhcCCCCcchhhhc
Confidence            345579999763 3578999999999999998542          11 02233589999995

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.82  E-value=0.0069  Score=38.35  Aligned_cols=52  Identities=23%  Similarity=0.503  Sum_probs=34.8

Q ss_pred             ccccccccccccc------------------CceEecCCCCCcccccccCCCCCCCC-CCCeEeCccccCC
Q psy14606          9 TEHQDYCEVCQQG------------------GEIILCDTCPRAYHLCCLDPELDETP-EGKWSCPRCVSDG   60 (145)
Q Consensus         9 ~~~~~~C~~C~~~------------------g~l~~Cd~C~~~~H~~Cl~p~~~~~p-~~~W~C~~C~~~~   60 (145)
                      ...++.|.||.+.                  ...+.-..|+..||..|+...+.... .+...||.|+...
T Consensus        22 ~~~~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~   92 (114)
T d1v87a_          22 VAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIY   92 (114)
T ss_dssp             SCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBS
T ss_pred             ccccccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCcCCCCccccccchh
Confidence            3456789999753                  11233346999999999987664332 3456799998543

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.49  E-value=0.017  Score=34.97  Aligned_cols=32  Identities=22%  Similarity=0.521  Sum_probs=24.6

Q ss_pred             eEecCCCCCcccccccCCCCCCCCCCCeEeCccccC
Q psy14606         24 IILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSD   59 (145)
Q Consensus        24 l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~   59 (145)
                      .+....|+..||..|+...+...    -.||.|+..
T Consensus        51 ~~~~~~C~H~FH~~Ci~~Wl~~~----~~CP~CR~~   82 (88)
T d3dplr1          51 TVAWGVCNHAFHFHCISRWLKTR----QVCPLDNRE   82 (88)
T ss_dssp             CEEEETTSCEEEHHHHHHHHTTC----SBCSSSCSB
T ss_pred             CeEEccccCcccHHHHHHHHHHC----CcCCCCCCc
Confidence            46667899999999999876643    258888754

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=88.05  E-value=0.085  Score=28.89  Aligned_cols=42  Identities=24%  Similarity=0.615  Sum_probs=30.2

Q ss_pred             cccccCCC---CCCeecCCCCCCCCCCCCCCCCCCCCCCCCceeCCCCCC
Q psy14606         78 LCAKCKSP---GDQFLLCETCNGSYHPHCLPDPIEGELPTSGWKCPKCSC  124 (145)
Q Consensus        78 ~C~vC~~~---g~~ll~C~~C~~~yH~~Cl~~~~~~~~p~~~w~C~~C~~  124 (145)
                      .|.+|.+.   ++.++....|+-.||..|+..=+. .    .-.||.|+.
T Consensus         7 ~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~-~----~~~CP~CR~   51 (55)
T d1iyma_           7 ECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLG-S----HSTCPLCRL   51 (55)
T ss_dssp             CCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTT-T----CCSCSSSCC
T ss_pred             CCeEECccccCCCEEEEeCCCCCcccHHHHHHHHH-h----CCcCCCCCC
Confidence            48888763   345666777999999999986544 2    336999974

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=83.96  E-value=0.067  Score=30.48  Aligned_cols=45  Identities=18%  Similarity=0.549  Sum_probs=32.3

Q ss_pred             ccccccccccc-CceEecCCCCCcccccccCCCCCCCCCCCeEeCccccC
Q psy14606         11 HQDYCEVCQQG-GEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSD   59 (145)
Q Consensus        11 ~~~~C~~C~~~-g~l~~Cd~C~~~~H~~Cl~p~~~~~p~~~W~C~~C~~~   59 (145)
                      ..+.|.||.+. .+.+....|+..||..|+...+...    -.||.|+..
T Consensus         4 ~~d~C~IC~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~----~~CP~CR~~   49 (68)
T d1chca_           4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQN----PTCPLCKVP   49 (68)
T ss_dssp             CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHS----CSTTTTCCC
T ss_pred             CCCCCccCCcCccCCcEEeCCCCcCcHHHHHHHHHhC----CcCCCCCcc
Confidence            34579999874 3556678899999999998654432    248888754